Query 002267
Match_columns 945
No_of_seqs 528 out of 4025
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 19:24:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002267.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002267hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kg2_A Glutamate receptor 2; I 100.0 4.3E-98 1E-102 929.2 62.2 770 49-883 1-814 (823)
2 3o21_A Glutamate receptor 3; p 100.0 6.6E-51 2.3E-55 457.9 42.3 372 48-445 3-381 (389)
3 4f11_A Gamma-aminobutyric acid 100.0 5E-50 1.7E-54 459.2 35.4 388 46-473 10-423 (433)
4 3om0_A Glutamate receptor, ion 100.0 1.6E-49 5.4E-54 448.8 36.9 372 49-445 3-382 (393)
5 4gpa_A Glutamate receptor 4; P 100.0 5.6E-48 1.9E-52 436.2 43.9 377 47-448 2-382 (389)
6 3h6g_A Glutamate receptor, ion 100.0 1.2E-48 4.2E-53 442.0 37.6 372 48-446 2-385 (395)
7 3hsy_A Glutamate receptor 2; l 100.0 1.1E-48 3.6E-53 438.6 36.6 364 50-443 2-373 (376)
8 3saj_A Glutamate receptor 1; r 100.0 6.3E-48 2.2E-52 433.8 39.6 369 46-447 6-380 (384)
9 1jdp_A NPR-C, atrial natriuret 100.0 1.5E-47 5.2E-52 439.6 41.7 365 47-440 6-397 (441)
10 1dp4_A Atrial natriuretic pept 100.0 1.3E-47 4.6E-52 439.6 37.6 362 49-439 1-398 (435)
11 2e4u_A Metabotropic glutamate 100.0 6.6E-47 2.3E-51 445.4 41.6 392 46-480 10-486 (555)
12 3sm9_A Mglur3, metabotropic gl 100.0 1E-46 3.5E-51 433.9 39.0 369 46-436 9-462 (479)
13 3ks9_A Mglur1, metabotropic gl 100.0 1.6E-46 5.5E-51 434.3 37.6 393 46-477 13-496 (496)
14 3qek_A NMDA glutamate receptor 100.0 1.1E-46 3.7E-51 424.2 33.4 340 47-437 2-369 (384)
15 3mq4_A Mglur7, metabotropic gl 100.0 1.2E-46 4.1E-51 434.8 27.1 371 46-436 12-467 (481)
16 3i45_A Twin-arginine transloca 100.0 3.3E-40 1.1E-44 371.9 31.4 359 48-450 3-372 (387)
17 3qel_B Glutamate [NMDA] recept 100.0 3.4E-40 1.2E-44 365.5 26.8 339 48-442 2-355 (364)
18 4f06_A Extracellular ligand-bi 100.0 3.6E-39 1.2E-43 360.7 31.6 336 48-425 3-346 (371)
19 3h5l_A Putative branched-chain 100.0 1E-39 3.5E-44 372.0 26.3 344 47-429 11-388 (419)
20 3td9_A Branched chain amino ac 100.0 2.6E-38 8.9E-43 353.7 31.6 342 46-438 12-363 (366)
21 3ipc_A ABC transporter, substr 100.0 2E-38 7E-43 353.1 29.6 344 49-438 1-352 (356)
22 4gnr_A ABC transporter substra 100.0 4.2E-38 1.4E-42 350.0 31.5 338 46-434 3-350 (353)
23 1usg_A Leucine-specific bindin 100.0 1.1E-37 3.6E-42 345.9 30.7 339 49-432 1-345 (346)
24 3hut_A Putative branched-chain 100.0 1.6E-37 5.5E-42 346.2 31.6 344 48-437 2-353 (358)
25 3i09_A Periplasmic branched-ch 100.0 2.4E-37 8E-42 347.0 32.4 334 48-428 2-342 (375)
26 3lkb_A Probable branched-chain 100.0 7.7E-38 2.6E-42 353.3 27.6 352 48-442 5-379 (392)
27 3n0w_A ABC branched chain amin 100.0 3.1E-37 1.1E-41 346.5 31.1 335 47-428 3-346 (379)
28 3eaf_A ABC transporter, substr 100.0 7.2E-37 2.5E-41 345.0 31.5 347 48-438 2-372 (391)
29 3n0x_A Possible substrate bind 100.0 1.9E-37 6.5E-42 347.4 24.4 331 49-427 3-347 (374)
30 4evq_A Putative ABC transporte 100.0 2.1E-36 7.2E-41 339.5 32.3 344 47-437 13-363 (375)
31 3lop_A Substrate binding perip 100.0 1.2E-36 4E-41 339.9 29.5 337 48-430 3-354 (364)
32 4eyg_A Twin-arginine transloca 100.0 2.6E-36 8.7E-41 337.8 29.5 344 47-437 3-359 (368)
33 3sg0_A Extracellular ligand-bi 100.0 2.3E-35 8E-40 332.3 22.6 342 48-432 25-385 (386)
34 1pea_A Amidase operon; gene re 100.0 2.2E-33 7.4E-38 315.8 33.8 347 47-435 4-357 (385)
35 3snr_A Extracellular ligand-bi 100.0 8.9E-34 3E-38 316.4 26.4 341 47-432 4-361 (362)
36 2h4a_A YRAM (HI1655); perplasm 100.0 2.2E-28 7.4E-33 264.5 19.6 307 52-432 2-317 (325)
37 3ckm_A YRAM (HI1655), LPOA; pe 100.0 1.5E-27 5.1E-32 261.2 21.3 313 50-434 2-321 (327)
38 1yae_A Glutamate receptor, ion 99.9 1.6E-26 5.3E-31 251.6 14.7 273 482-850 10-305 (312)
39 3g3k_A Glutamate receptor, ion 99.9 2E-24 6.8E-29 228.3 15.5 233 483-834 2-258 (259)
40 2a5s_A N-methyl-D-aspartate re 99.9 4.2E-25 1.4E-29 236.6 10.2 248 480-834 24-283 (284)
41 1pb7_A N-methyl-D-aspartate re 99.9 2.8E-24 9.5E-29 231.0 13.5 233 485-834 41-291 (292)
42 2rc8_A Glutamate [NMDA] recept 99.9 9.7E-24 3.3E-28 227.2 14.5 216 509-834 67-293 (294)
43 4h5g_A Amino acid ABC superfam 99.9 4.6E-23 1.6E-27 215.4 15.8 220 485-829 12-237 (243)
44 4gvo_A LMO2349 protein; struct 99.9 1.8E-23 6E-28 218.6 12.3 225 483-830 7-236 (243)
45 1mqi_A Glutamate receptor 2; G 99.9 2.4E-22 8.1E-27 212.9 18.0 232 484-834 3-262 (263)
46 2v3u_A Glutamate receptor delt 99.9 3.7E-22 1.3E-26 211.6 16.6 236 483-834 1-264 (265)
47 3kzg_A Arginine 3RD transport 99.9 4.1E-22 1.4E-26 207.4 16.5 220 485-831 3-232 (237)
48 4f3p_A Glutamine-binding perip 99.9 1.1E-21 3.7E-26 205.9 18.2 223 482-831 21-244 (249)
49 3i6v_A Periplasmic His/Glu/Gln 99.9 1E-21 3.5E-26 203.6 15.5 220 484-837 4-225 (232)
50 3hv1_A Polar amino acid ABC up 99.9 1.5E-21 5.2E-26 207.3 17.0 227 484-835 20-254 (268)
51 3k4u_A Binding component of AB 99.9 1.4E-21 4.7E-26 204.5 15.6 225 484-831 4-230 (245)
52 3del_B Arginine binding protei 99.9 3.5E-21 1.2E-25 201.0 18.3 223 483-835 9-238 (242)
53 3tql_A Arginine-binding protei 99.9 9.4E-21 3.2E-25 195.3 17.6 219 485-828 2-227 (227)
54 3kbr_A Cyclohexadienyl dehydra 99.9 2.1E-21 7.1E-26 202.3 12.8 221 484-829 14-237 (239)
55 1ii5_A SLR1257 protein; membra 99.9 1.4E-20 4.9E-25 194.9 19.0 220 484-830 3-227 (233)
56 3h7m_A Sensor protein; histidi 99.8 1.8E-20 6.1E-25 194.3 17.6 220 483-829 9-230 (234)
57 4dz1_A DALS D-alanine transpor 99.8 3.6E-20 1.2E-24 195.5 19.8 224 483-830 27-254 (259)
58 1lst_A Lysine, arginine, ornit 99.8 1.8E-20 6E-25 195.2 16.4 224 484-831 3-234 (239)
59 4eq9_A ABC transporter substra 99.8 1.3E-20 4.5E-25 197.0 14.9 226 484-834 7-240 (246)
60 3mpk_A Virulence sensor protei 99.8 2.4E-20 8.2E-25 197.8 17.0 221 483-830 30-253 (267)
61 1wdn_A GLNBP, glutamine bindin 99.8 4E-20 1.4E-24 190.4 17.1 218 485-829 3-222 (226)
62 2y7i_A STM4351; arginine-bindi 99.8 1.1E-19 3.6E-24 187.8 16.7 217 484-829 5-228 (229)
63 2iee_A ORF2, probable ABC tran 99.8 2.9E-20 9.8E-25 197.7 11.1 223 483-832 19-250 (271)
64 2pyy_A Ionotropic glutamate re 99.8 1.9E-19 6.6E-24 185.6 15.1 219 485-829 3-222 (228)
65 2pvu_A ARTJ; basic amino acid 99.8 5.5E-19 1.9E-23 187.9 18.0 221 483-830 40-263 (272)
66 3qax_A Probable ABC transporte 99.8 6E-19 2.1E-23 187.0 17.1 219 483-830 29-254 (268)
67 2q88_A EHUB, putative ABC tran 99.8 3.3E-19 1.1E-23 187.8 14.3 222 484-828 12-239 (257)
68 1xt8_A Putative amino-acid tra 99.8 7.3E-19 2.5E-23 189.1 14.8 218 484-829 43-265 (292)
69 2vha_A Periplasmic binding tra 99.8 1.5E-18 5.2E-23 186.0 16.9 225 484-831 16-250 (287)
70 4i62_A Amino acid ABC transpor 99.8 1.3E-18 4.3E-23 184.6 15.8 220 484-829 38-264 (269)
71 2yjp_A Putative ABC transporte 99.8 9.6E-19 3.3E-23 187.9 14.8 217 485-829 55-276 (291)
72 2yln_A Putative ABC transporte 99.8 9E-19 3.1E-23 187.3 14.3 218 484-830 56-278 (283)
73 2v25_A Major cell-binding fact 99.7 1.1E-16 3.8E-21 168.4 13.6 215 484-828 37-258 (259)
74 3n5l_A Binding protein compone 98.8 2.7E-08 9.3E-13 106.6 11.8 214 485-827 4-241 (310)
75 3p7i_A PHND, subunit of alkylp 98.7 7.2E-08 2.5E-12 103.6 13.2 216 483-827 12-250 (321)
76 2ozz_A Hypothetical protein YH 98.5 5E-07 1.7E-11 90.0 12.4 181 508-829 28-224 (231)
77 2h3h_A Sugar ABC transporter, 98.4 1.2E-05 4.1E-10 86.4 20.8 208 51-276 2-216 (313)
78 3ksm_A ABC-type sugar transpor 98.4 9.4E-06 3.2E-10 85.3 19.0 209 51-276 1-221 (276)
79 3brs_A Periplasmic binding pro 98.3 2.2E-05 7.5E-10 83.1 19.7 210 50-276 5-224 (289)
80 3brq_A HTH-type transcriptiona 98.3 8.5E-06 2.9E-10 86.7 16.3 211 48-276 17-236 (296)
81 3d02_A Putative LACI-type tran 98.3 5.2E-05 1.8E-09 80.8 21.7 210 49-275 3-222 (303)
82 2rjo_A Twin-arginine transloca 98.3 4.4E-05 1.5E-09 82.7 21.2 211 49-273 4-228 (332)
83 2qu7_A Putative transcriptiona 98.3 5.6E-06 1.9E-10 87.8 13.5 209 48-276 6-223 (288)
84 1dbq_A Purine repressor; trans 98.3 3.1E-05 1.1E-09 81.9 19.1 211 49-276 6-223 (289)
85 3rot_A ABC sugar transporter, 98.2 2.3E-05 8E-10 83.4 17.5 205 50-268 3-215 (297)
86 2qh8_A Uncharacterized protein 98.2 3.4E-05 1.2E-09 82.3 18.3 188 48-249 6-202 (302)
87 2fn9_A Ribose ABC transporter, 98.2 5.8E-05 2E-09 79.9 19.5 197 51-265 3-215 (290)
88 1tjy_A Sugar transport protein 98.2 9.1E-05 3.1E-09 79.5 20.8 206 52-276 5-222 (316)
89 3l49_A ABC sugar (ribose) tran 98.2 7.1E-05 2.4E-09 79.2 19.5 208 49-276 4-224 (291)
90 2x7x_A Sensor protein; transfe 98.1 8.6E-05 3E-09 80.1 19.5 211 49-277 5-223 (325)
91 3o1i_D Periplasmic protein TOR 98.1 3.4E-05 1.2E-09 82.3 16.0 205 49-266 4-218 (304)
92 3lft_A Uncharacterized protein 98.1 0.00018 6E-09 76.4 20.8 200 50-265 2-210 (295)
93 3c3k_A Alanine racemase; struc 98.1 9.5E-05 3.2E-09 78.0 18.3 202 49-273 7-216 (285)
94 3lkv_A Uncharacterized conserv 98.1 6.5E-05 2.2E-09 80.0 17.0 190 47-250 5-203 (302)
95 2vk2_A YTFQ, ABC transporter p 98.1 0.00016 5.6E-09 77.1 20.3 212 50-276 2-227 (306)
96 2h0a_A TTHA0807, transcription 98.1 1.6E-05 5.6E-10 83.5 12.1 202 52-273 1-212 (276)
97 2fvy_A D-galactose-binding per 98.1 0.00013 4.3E-09 78.0 19.3 204 51-264 3-226 (309)
98 2iks_A DNA-binding transcripti 98.1 0.00014 4.7E-09 77.1 18.9 210 48-276 18-233 (293)
99 2fep_A Catabolite control prot 98.1 0.0001 3.5E-09 78.0 17.7 211 48-276 14-231 (289)
100 3h75_A Periplasmic sugar-bindi 98.0 0.00026 8.8E-09 77.2 21.3 214 50-276 3-241 (350)
101 3gbv_A Putative LACI-family tr 98.0 9.7E-05 3.3E-09 78.7 17.4 211 48-276 6-232 (304)
102 3clk_A Transcription regulator 98.0 3.6E-05 1.2E-09 81.5 13.8 209 49-275 7-220 (290)
103 3g1w_A Sugar ABC transporter; 98.0 0.00029 1E-08 75.0 20.9 211 50-276 4-221 (305)
104 3d8u_A PURR transcriptional re 98.0 0.00011 3.7E-09 77.1 17.0 205 50-273 3-213 (275)
105 2ioy_A Periplasmic sugar-bindi 98.0 0.00063 2.2E-08 71.5 22.6 205 52-276 3-216 (283)
106 3l6u_A ABC-type sugar transpor 98.0 0.00027 9.3E-09 74.7 19.7 209 48-276 6-228 (293)
107 2rgy_A Transcriptional regulat 98.0 6E-05 2E-09 79.8 14.5 210 49-276 7-225 (290)
108 2o20_A Catabolite control prot 98.0 0.00011 3.8E-09 79.5 16.7 211 48-276 61-275 (332)
109 2hsg_A Glucose-resistance amyl 98.0 6E-05 2E-09 81.6 14.6 211 48-276 58-275 (332)
110 3k4h_A Putative transcriptiona 98.0 0.00011 3.6E-09 77.9 15.9 212 48-276 6-228 (292)
111 3bbl_A Regulatory protein of L 98.0 6.8E-05 2.3E-09 79.3 14.3 209 50-276 4-224 (287)
112 3ctp_A Periplasmic binding pro 97.9 7.1E-05 2.4E-09 80.9 14.1 202 48-273 58-263 (330)
113 3dbi_A Sugar-binding transcrip 97.9 0.00016 5.3E-09 78.5 16.7 212 48-276 59-278 (338)
114 1jx6_A LUXP protein; protein-l 97.9 0.00023 7.8E-09 77.3 17.7 208 47-265 40-258 (342)
115 8abp_A L-arabinose-binding pro 97.9 0.00041 1.4E-08 73.8 19.4 215 50-277 2-233 (306)
116 1qpz_A PURA, protein (purine n 97.9 0.00036 1.2E-08 75.7 18.8 211 49-276 57-274 (340)
117 3o74_A Fructose transport syst 97.9 0.00035 1.2E-08 72.9 18.0 207 51-276 3-215 (272)
118 2x26_A Periplasmic aliphatic s 97.9 5.9E-05 2E-09 80.6 11.9 121 701-829 96-232 (308)
119 3gyb_A Transcriptional regulat 97.8 8.7E-05 3E-09 78.1 11.5 205 49-276 4-212 (280)
120 3gv0_A Transcriptional regulat 97.8 0.00058 2E-08 72.0 17.4 209 48-275 6-223 (288)
121 3egc_A Putative ribose operon 97.8 0.00019 6.5E-09 75.9 13.6 209 48-276 6-222 (291)
122 3m9w_A D-xylose-binding peripl 97.7 0.0011 3.7E-08 70.9 19.4 200 50-266 2-213 (313)
123 3hcw_A Maltose operon transcri 97.7 0.0011 3.9E-08 70.0 19.2 209 49-276 6-228 (295)
124 3ksx_A Nitrate transport prote 97.7 0.00045 1.6E-08 74.3 15.9 93 700-799 121-218 (324)
125 3k9c_A Transcriptional regulat 97.7 0.001 3.5E-08 70.1 18.2 208 48-276 10-221 (289)
126 3g85_A Transcriptional regulat 97.7 0.00028 9.6E-09 74.5 12.9 204 48-271 9-218 (289)
127 3kjx_A Transcriptional regulat 97.6 0.00075 2.5E-08 73.3 16.2 209 48-274 66-280 (344)
128 3kke_A LACI family transcripti 97.6 0.00084 2.9E-08 71.4 16.0 209 48-276 13-233 (303)
129 2dri_A D-ribose-binding protei 97.6 0.0041 1.4E-07 64.7 20.9 205 52-276 3-215 (271)
130 3jy6_A Transcriptional regulat 97.6 0.0021 7.1E-08 67.2 18.6 205 48-274 5-214 (276)
131 1byk_A Protein (trehalose oper 97.6 0.0028 9.6E-08 65.2 19.0 199 51-276 3-205 (255)
132 3tb6_A Arabinose metabolism tr 97.6 0.00081 2.8E-08 71.2 15.1 207 51-274 16-234 (298)
133 3qk7_A Transcriptional regulat 97.6 0.00082 2.8E-08 71.1 15.0 208 49-276 5-223 (294)
134 2f5x_A BUGD; periplasmic bindi 97.6 0.00065 2.2E-08 71.9 13.8 123 700-827 121-275 (312)
135 3bil_A Probable LACI-family tr 97.5 0.0015 5.2E-08 70.9 17.0 208 49-276 65-277 (348)
136 3e3m_A Transcriptional regulat 97.5 0.0034 1.2E-07 68.3 19.5 207 49-273 69-282 (355)
137 3cs3_A Sugar-binding transcrip 97.5 0.003 1E-07 66.0 18.3 199 48-274 6-210 (277)
138 3uif_A Sulfonate ABC transport 97.5 0.00052 1.8E-08 74.6 12.8 105 701-813 110-227 (348)
139 3un6_A Hypothetical protein sa 97.5 0.00019 6.4E-09 78.0 8.8 123 700-829 143-283 (341)
140 3uug_A Multiple sugar-binding 97.5 0.0016 5.6E-08 70.0 16.0 205 50-269 3-232 (330)
141 2qpq_A Protein BUG27; alpha/be 97.5 0.001 3.5E-08 70.2 13.8 123 700-827 112-266 (301)
142 1gud_A ALBP, D-allose-binding 97.5 0.011 3.7E-07 62.1 21.7 213 52-276 3-227 (288)
143 3h5o_A Transcriptional regulat 97.4 0.0041 1.4E-07 67.2 18.6 206 48-273 60-271 (339)
144 2dvz_A BUGE, putative exported 97.4 0.00083 2.8E-08 71.2 12.4 123 700-827 125-279 (314)
145 3e61_A Putative transcriptiona 97.3 0.0015 5E-08 68.4 13.1 200 49-274 7-210 (277)
146 2fqx_A Membrane lipoprotein TM 97.3 0.0085 2.9E-07 64.0 19.2 206 49-274 3-220 (318)
147 3huu_A Transcription regulator 97.3 0.0042 1.4E-07 65.9 16.5 206 48-276 20-238 (305)
148 4fe7_A Xylose operon regulator 97.3 0.0052 1.8E-07 68.4 17.7 211 46-276 21-239 (412)
149 3qsl_A Putative exported prote 97.3 0.0016 5.4E-08 70.6 13.2 136 522-776 59-204 (346)
150 3hs3_A Ribose operon repressor 97.3 0.0039 1.3E-07 65.1 15.3 197 48-273 8-210 (277)
151 3s99_A Basic membrane lipoprot 97.2 0.011 3.9E-07 63.6 19.0 200 47-265 23-230 (356)
152 1jye_A Lactose operon represso 97.2 0.011 3.7E-07 64.1 18.6 204 48-273 59-270 (349)
153 3jvd_A Transcriptional regulat 97.2 0.0087 3E-07 64.4 17.4 201 48-276 62-267 (333)
154 2hqb_A Transcriptional activat 97.1 0.035 1.2E-06 58.4 21.3 194 49-264 4-204 (296)
155 3ix1_A N-formyl-4-amino-5-amin 97.0 0.0011 3.6E-08 70.5 8.3 78 508-593 15-96 (302)
156 3miz_A Putative transcriptiona 97.0 0.0011 3.7E-08 70.4 7.7 203 48-271 11-227 (301)
157 2k1e_A Water soluble analogue 96.5 0.0021 7.3E-08 55.4 4.6 78 616-697 18-97 (103)
158 4ddd_A Immunogenic protein; ss 96.4 0.0051 1.7E-07 65.9 8.1 60 701-766 137-202 (327)
159 3ixl_A Amdase, arylmalonate de 96.2 0.062 2.1E-06 54.2 14.2 126 106-259 57-199 (240)
160 3h5t_A Transcriptional regulat 96.2 0.03 1E-06 61.0 12.7 211 48-274 66-302 (366)
161 2ih3_C Voltage-gated potassium 96.0 0.0066 2.3E-07 54.1 5.0 76 618-697 41-118 (122)
162 3jv9_A OXYR, transcriptional r 95.9 0.074 2.5E-06 52.4 13.2 83 485-593 4-86 (219)
163 3qi7_A Putative transcriptiona 95.8 0.2 6.8E-06 53.3 16.2 217 47-267 9-251 (371)
164 3eff_K Voltage-gated potassium 95.6 0.02 6.9E-07 52.4 6.8 73 619-695 21-95 (139)
165 2a9h_A Voltage-gated potassium 95.6 0.017 5.9E-07 53.7 6.2 76 618-697 64-141 (155)
166 2x7q_A Ca3427, possible thiami 95.5 0.034 1.2E-06 59.3 9.4 90 701-800 111-210 (321)
167 4ab5_A Transcriptional regulat 95.4 0.092 3.1E-06 51.9 11.5 83 485-593 8-90 (222)
168 2g29_A Nitrate transport prote 95.2 0.068 2.3E-06 59.3 10.5 104 706-816 151-272 (417)
169 1us5_A Putative GLUR0 ligand b 95.0 0.086 3E-06 55.8 10.6 60 701-766 122-187 (314)
170 3ho7_A OXYR; beta-alpha-barrel 94.9 0.067 2.3E-06 53.4 8.9 83 485-593 11-93 (232)
171 4h33_A LMO2059 protein; bilaye 94.7 0.051 1.7E-06 49.4 6.5 57 641-697 42-100 (137)
172 2xed_A Putative maleate isomer 93.8 0.77 2.6E-05 47.2 14.0 124 107-258 82-226 (273)
173 3oxn_A Putative transcriptiona 93.4 0.94 3.2E-05 45.2 13.9 84 484-593 18-101 (241)
174 3pjs_K KCSA, voltage-gated pot 93.4 0.012 4.1E-07 55.7 -0.6 73 621-697 50-124 (166)
175 1zbm_A Hypothetical protein AF 93.0 0.17 5.7E-06 52.5 7.6 102 706-818 99-211 (280)
176 2hxr_A HTH-type transcriptiona 92.9 1.7 6E-05 43.0 15.0 83 485-593 30-112 (238)
177 3ldc_A Calcium-gated potassium 92.7 0.18 6.2E-06 41.0 5.7 52 642-693 28-81 (82)
178 3fzv_A Probable transcriptiona 92.5 1.5 5.2E-05 45.5 14.3 83 485-593 95-178 (306)
179 1i6a_A OXYR, hydrogen peroxide 92.4 0.15 5.2E-06 50.3 6.1 83 485-593 5-87 (219)
180 2ql3_A Probable transcriptiona 91.9 2.1 7.1E-05 41.3 13.8 83 485-593 5-87 (209)
181 3ouf_A Potassium channel prote 91.9 0.15 5.2E-06 43.0 4.4 59 641-699 31-91 (97)
182 1p7b_A Integral membrane chann 91.6 0.27 9.2E-06 51.8 7.0 62 637-698 91-154 (333)
183 2fyi_A HTH-type transcriptiona 91.0 3.9 0.00013 40.1 14.9 84 485-593 14-97 (228)
184 2esn_A Probable transcriptiona 90.9 3 0.0001 43.4 14.6 83 485-593 101-186 (310)
185 2q67_A Potassium channel prote 90.8 0.33 1.1E-05 42.4 5.6 55 642-696 49-105 (114)
186 1atg_A MODA, periplasmic molyb 90.8 0.81 2.8E-05 45.2 9.5 72 513-593 13-90 (231)
187 2i49_A Bicarbonate transporter 90.6 0.54 1.8E-05 52.0 8.5 67 705-776 153-229 (429)
188 4gx0_A TRKA domain protein; me 90.5 0.44 1.5E-05 55.0 8.1 120 642-768 51-180 (565)
189 1ixc_A CBNR, LYSR-type regulat 90.2 4.8 0.00017 41.2 15.4 83 485-593 91-173 (294)
190 1xl4_A Inward rectifier potass 90.2 0.38 1.3E-05 50.0 6.5 62 636-697 76-139 (301)
191 3vou_A ION transport 2 domain 89.9 0.49 1.7E-05 43.5 6.3 54 642-695 52-107 (148)
192 2zzv_A ABC transporter, solute 89.9 1.3 4.5E-05 47.6 10.8 59 700-770 164-222 (361)
193 2y7p_A LYSR-type regulatory pr 89.9 2.2 7.5E-05 41.8 11.7 84 484-593 7-90 (218)
194 1lnq_A MTHK channels, potassiu 89.6 0.31 1E-05 52.2 5.4 121 642-771 45-168 (336)
195 1al3_A Cys regulon transcripti 89.5 4.4 0.00015 42.5 14.5 84 485-593 93-176 (324)
196 1orq_C Potassium channel; volt 89.4 0.44 1.5E-05 47.5 6.0 73 619-695 146-220 (223)
197 2dgd_A 223AA long hypothetical 89.4 2.1 7.3E-05 42.3 11.1 86 171-259 96-190 (223)
198 3fxq_A LYSR type regulator of 88.4 3.5 0.00012 42.7 12.7 85 485-593 92-176 (305)
199 4esw_A Pyrimidine biosynthesis 87.3 1.5 5.2E-05 46.7 9.0 66 700-772 101-169 (342)
200 2pfy_A Putative exported prote 87.1 3.2 0.00011 43.3 11.2 57 700-768 129-185 (301)
201 3r26_A Molybdate-binding perip 86.9 3.4 0.00012 41.2 10.9 70 515-593 22-97 (237)
202 2pfz_A Putative exported prote 86.6 3.1 0.00011 43.3 10.7 58 700-769 128-185 (301)
203 3beh_A MLL3241 protein; transm 85.1 0.55 1.9E-05 50.6 4.1 75 617-695 140-216 (355)
204 2hzl_A Trap-T family sorbitol/ 85.1 2.3 7.9E-05 45.8 9.0 87 700-800 163-252 (365)
205 3gzg_A Molybdate-binding perip 85.0 3.8 0.00013 41.4 10.1 70 515-593 38-113 (253)
206 3s99_A Basic membrane lipoprot 84.8 6.7 0.00023 41.8 12.4 90 51-149 150-239 (356)
207 3bfj_A 1,3-propanediol oxidore 84.8 4.1 0.00014 44.2 10.9 88 173-260 23-114 (387)
208 1sw5_A Osmoprotection protein 84.7 2.7 9.4E-05 43.1 9.0 106 701-815 124-238 (275)
209 2qks_A KIR3.1-prokaryotic KIR 84.5 1.3 4.5E-05 46.3 6.4 57 642-698 78-136 (321)
210 1uth_A LYSR-type regulatory pr 84.0 7.6 0.00026 40.4 12.4 69 513-593 119-187 (315)
211 2fqx_A Membrane lipoprotein TM 83.7 13 0.00043 38.9 14.0 125 52-183 131-263 (318)
212 2eq5_A 228AA long hypothetical 83.6 5.6 0.00019 39.3 10.5 113 108-252 68-186 (228)
213 2r9r_B Paddle chimera voltage 83.2 0.93 3.2E-05 51.3 5.0 73 619-695 356-430 (514)
214 1xs5_A 29 kDa protein, membran 83.2 17 0.00059 36.1 13.9 36 518-561 21-56 (241)
215 3ox4_A Alcohol dehydrogenase 2 81.7 1.7 5.8E-05 47.1 6.2 90 172-261 20-111 (383)
216 3hhf_B Transcriptional regulat 80.0 2.2 7.5E-05 41.2 5.9 67 512-593 20-86 (213)
217 2h9b_A HTH-type transcriptiona 80.0 40 0.0014 34.6 16.3 70 512-593 103-172 (312)
218 1twy_A ABC transporter, peripl 80.0 27 0.00093 35.2 14.8 72 513-593 41-113 (290)
219 2h98_A HTH-type transcriptiona 79.7 49 0.0017 34.0 16.9 70 512-593 103-172 (313)
220 2l82_A Designed protein OR32; 79.0 20 0.00069 29.5 10.0 97 160-265 4-104 (162)
221 2q5c_A NTRC family transcripti 78.7 47 0.0016 31.7 17.6 160 50-267 4-163 (196)
222 1jfl_A Aspartate racemase; alp 78.7 8.4 0.00029 38.1 9.8 80 106-214 65-144 (228)
223 2hqb_A Transcriptional activat 78.4 20 0.00069 36.9 13.1 120 52-185 128-248 (296)
224 1rrm_A Lactaldehyde reductase; 76.8 3.4 0.00012 44.8 6.7 88 174-261 22-111 (386)
225 1vlj_A NADH-dependent butanol 76.3 6.2 0.00021 43.1 8.6 88 173-260 33-123 (407)
226 2zsk_A PH1733, 226AA long hypo 75.7 9.6 0.00033 37.6 9.2 77 110-215 68-144 (226)
227 3ukm_A Potassium channel subfa 75.5 2.6 8.9E-05 42.9 4.9 68 641-708 200-276 (280)
228 1o2d_A Alcohol dehydrogenase, 72.1 9.4 0.00032 41.0 8.6 87 173-260 31-120 (371)
229 3onm_A Transcriptional regulat 71.6 58 0.002 31.5 14.2 81 485-593 27-107 (238)
230 2dwu_A Glutamate racemase; iso 71.1 23 0.0008 36.0 11.0 118 105-250 59-190 (276)
231 3uhj_A Probable glycerol dehyd 71.0 4.5 0.00015 43.7 5.8 81 174-258 44-126 (387)
232 3kos_A HTH-type transcriptiona 70.8 24 0.00083 33.7 10.9 104 702-813 95-202 (219)
233 2gzm_A Glutamate racemase; enz 70.3 13 0.00045 37.7 8.8 39 106-144 56-94 (267)
234 3m9w_A D-xylose-binding peripl 70.0 12 0.00042 38.7 8.9 79 184-265 3-84 (313)
235 3k6v_A Solute-binding protein 69.9 51 0.0017 34.8 13.6 69 516-593 59-133 (354)
236 2oho_A Glutamate racemase; iso 69.4 17 0.00058 37.0 9.4 116 107-250 66-194 (273)
237 3g1w_A Sugar ABC transporter; 67.8 9.3 0.00032 39.4 7.3 81 184-266 5-88 (305)
238 3jy6_A Transcriptional regulat 67.4 14 0.00047 37.4 8.5 79 182-265 6-86 (276)
239 3l49_A ABC sugar (ribose) tran 67.1 13 0.00043 38.0 8.2 81 183-266 5-88 (291)
240 3ist_A Glutamate racemase; str 66.1 26 0.00087 35.5 9.8 39 106-144 58-96 (269)
241 1r9l_A Glycine betaine-binding 66.0 13 0.00045 38.7 8.0 40 515-562 24-63 (309)
242 4ef1_A Pheromone COB1/lipoprot 65.8 53 0.0018 32.5 11.8 120 700-827 91-237 (246)
243 3ce9_A Glycerol dehydrogenase; 65.8 15 0.0005 39.2 8.4 109 158-277 12-122 (354)
244 3dbi_A Sugar-binding transcrip 65.4 16 0.00053 38.5 8.6 88 175-265 53-144 (338)
245 1nh8_A ATP phosphoribosyltrans 65.0 14 0.00048 37.8 7.5 101 702-815 121-224 (304)
246 3cij_A UPF0100 protein AF_0094 64.6 87 0.003 31.8 14.1 71 514-593 19-95 (295)
247 3l6g_A Betaine ABC transporter 64.3 23 0.00078 35.6 9.1 43 513-564 16-58 (256)
248 3tb6_A Arabinose metabolism tr 64.2 18 0.00062 36.9 8.8 79 184-265 16-100 (298)
249 3hn0_A Nitrate transport prote 63.6 8.3 0.00028 39.6 5.8 60 712-776 96-160 (283)
250 1mkz_A Molybdenum cofactor bio 63.4 22 0.00075 33.2 8.2 63 184-248 11-77 (172)
251 3l6u_A ABC-type sugar transpor 63.0 15 0.0005 37.6 7.7 81 182-265 7-90 (293)
252 8abp_A L-arabinose-binding pro 62.7 19 0.00065 37.0 8.6 78 184-265 3-83 (306)
253 3o74_A Fructose transport syst 62.5 9 0.00031 38.7 5.9 79 184-265 3-83 (272)
254 3h75_A Periplasmic sugar-bindi 62.4 15 0.00052 38.8 7.9 80 183-265 3-87 (350)
255 2czl_A Hypothetical protein TT 62.2 9.2 0.00032 38.8 5.9 59 705-771 91-150 (272)
256 4dik_A Flavoprotein; TM0755, e 61.9 31 0.0011 37.4 10.3 92 183-279 265-364 (410)
257 1b73_A Glutamate racemase; iso 61.8 33 0.0011 34.4 9.8 119 105-251 52-181 (254)
258 3uug_A Multiple sugar-binding 61.6 17 0.00059 37.8 8.1 79 184-265 4-85 (330)
259 2rin_A Putative glycine betain 61.1 15 0.00052 37.9 7.3 64 701-769 104-181 (298)
260 2jfq_A Glutamate racemase; cel 60.8 37 0.0013 34.7 10.1 39 106-144 75-113 (286)
261 2pju_A Propionate catabolism o 60.7 46 0.0016 32.5 10.2 136 90-267 39-175 (225)
262 3isp_A HTH-type transcriptiona 60.6 28 0.00096 35.5 9.5 55 528-593 119-173 (303)
263 4edp_A ABC transporter, substr 60.6 67 0.0023 33.4 12.7 82 741-827 216-299 (351)
264 1jq5_A Glycerol dehydrogenase; 60.1 13 0.00045 39.8 6.8 82 174-258 23-106 (370)
265 3kke_A LACI family transcripti 59.8 15 0.00053 37.8 7.2 87 175-265 7-95 (303)
266 3cfx_A UPF0100 protein MA_0280 59.7 48 0.0016 33.9 11.0 71 514-593 19-95 (296)
267 3h5o_A Transcriptional regulat 59.7 23 0.00078 37.2 8.7 84 178-265 57-142 (339)
268 2l69_A Rossmann 2X3 fold prote 59.6 57 0.002 26.0 8.4 64 164-236 57-120 (134)
269 1zuw_A Glutamate racemase 1; ( 58.9 40 0.0014 34.2 9.9 120 104-250 54-187 (272)
270 3cfz_A UPF0100 protein MJ1186; 57.6 58 0.002 33.2 11.1 71 514-593 19-95 (292)
271 2jfn_A Glutamate racemase; cel 57.6 31 0.0011 35.3 8.8 38 107-144 75-113 (285)
272 3tmg_A Glycine betaine, L-prol 57.5 44 0.0015 34.0 10.0 41 514-563 31-71 (280)
273 3gbv_A Putative LACI-family tr 57.4 23 0.00078 36.3 8.0 86 181-266 6-96 (304)
274 2vvt_A Glutamate racemase; iso 56.8 34 0.0012 35.0 9.0 118 105-250 76-207 (290)
275 3d02_A Putative LACI-type tran 56.3 22 0.00076 36.4 7.7 80 184-265 5-87 (303)
276 2fvy_A D-galactose-binding per 56.3 28 0.00097 35.6 8.6 79 184-265 3-85 (309)
277 3brq_A HTH-type transcriptiona 56.3 31 0.001 35.0 8.8 84 178-265 14-102 (296)
278 1tjy_A Sugar transport protein 56.2 14 0.00048 38.4 6.2 80 184-265 4-86 (316)
279 2fn9_A Ribose ABC transporter, 55.9 25 0.00086 35.7 8.0 79 184-265 3-84 (290)
280 1h3d_A ATP-phosphoribosyltrans 55.5 38 0.0013 34.6 8.8 101 701-815 115-218 (299)
281 3ojc_A Putative aspartate/glut 54.1 14 0.00046 36.6 5.2 80 107-215 68-148 (231)
282 3e3m_A Transcriptional regulat 54.1 28 0.00097 36.7 8.3 84 178-265 65-150 (355)
283 2iks_A DNA-binding transcripti 53.8 14 0.00047 37.9 5.5 85 178-265 15-101 (293)
284 3um7_A Potassium channel subfa 53.5 15 0.0005 38.0 5.4 54 642-695 224-285 (309)
285 2de3_A Dibenzothiophene desulf 53.3 39 0.0013 36.0 9.1 121 699-829 108-299 (365)
286 3hl0_A Maleylacetate reductase 52.7 19 0.00064 38.3 6.3 83 173-259 24-108 (353)
287 3fd3_A Chromosome replication 52.5 68 0.0023 29.9 10.1 68 512-592 15-82 (208)
288 3lr1_A Tungstate ABC transport 52.3 6.8 0.00023 38.9 2.6 75 511-594 18-95 (236)
289 3rot_A ABC sugar transporter, 52.2 19 0.00064 36.9 6.3 82 184-266 4-88 (297)
290 2xxp_A CPS2A; replication, pep 52.1 16 0.00056 39.3 5.8 68 699-775 25-98 (398)
291 2hxw_A Major antigenic peptide 51.8 35 0.0012 33.3 8.0 40 515-564 16-55 (237)
292 3huu_A Transcription regulator 51.6 16 0.00056 37.6 5.7 87 175-265 14-107 (305)
293 2fep_A Catabolite control prot 51.6 31 0.0011 35.1 7.8 79 183-265 16-96 (289)
294 2ioy_A Periplasmic sugar-bindi 51.5 28 0.00097 35.2 7.5 79 184-265 2-83 (283)
295 3uhf_A Glutamate racemase; str 51.1 32 0.0011 34.9 7.4 59 85-144 47-115 (274)
296 2dri_A D-ribose-binding protei 50.9 34 0.0012 34.3 7.9 79 184-265 2-83 (271)
297 3k9c_A Transcriptional regulat 50.9 33 0.0011 34.8 7.9 81 178-265 7-89 (289)
298 3s81_A Putative aspartate race 50.9 24 0.00083 35.7 6.6 39 105-144 89-127 (268)
299 3kjx_A Transcriptional regulat 50.7 44 0.0015 35.0 9.1 78 184-265 69-148 (344)
300 2l69_A Rossmann 2X3 fold prote 49.9 24 0.00081 28.2 4.7 100 157-264 25-125 (134)
301 3ksm_A ABC-type sugar transpor 49.7 23 0.00079 35.5 6.4 80 185-265 2-85 (276)
302 3k4h_A Putative transcriptiona 49.4 24 0.00082 35.9 6.5 80 182-265 7-93 (292)
303 2pjk_A 178AA long hypothetical 49.4 47 0.0016 31.1 7.9 66 181-248 13-89 (178)
304 1ta9_A Glycerol dehydrogenase; 49.0 28 0.00096 38.3 7.2 96 173-276 81-178 (450)
305 3um7_A Potassium channel subfa 49.0 11 0.00039 38.8 3.8 54 641-694 114-169 (309)
306 3jzd_A Iron-containing alcohol 48.7 28 0.00095 37.0 6.9 95 173-276 26-122 (358)
307 3qvl_A Putative hydantoin race 48.3 1.1E+02 0.0038 30.2 11.0 160 51-250 2-184 (245)
308 1y5e_A Molybdenum cofactor bio 48.2 52 0.0018 30.4 8.0 66 181-248 11-80 (169)
309 3rfq_A Pterin-4-alpha-carbinol 47.9 37 0.0013 32.0 6.9 65 182-248 29-97 (185)
310 3egc_A Putative ribose operon 47.9 18 0.00061 36.9 5.3 80 182-265 7-88 (291)
311 2o20_A Catabolite control prot 47.6 36 0.0012 35.5 7.7 84 178-265 58-143 (332)
312 2yxb_A Coenzyme B12-dependent 47.1 90 0.0031 28.5 9.3 85 184-275 19-107 (161)
313 3szp_A Transcriptional regulat 46.4 8.3 0.00028 39.2 2.3 80 485-593 91-170 (291)
314 3e61_A Putative transcriptiona 46.1 33 0.0011 34.5 6.9 77 183-265 8-87 (277)
315 3muq_A Uncharacterized conserv 45.1 9.6 0.00033 37.8 2.4 75 511-594 18-95 (237)
316 2is8_A Molybdopterin biosynthe 45.0 48 0.0016 30.5 7.1 62 185-248 3-70 (164)
317 2h3h_A Sugar ABC transporter, 44.7 39 0.0013 34.8 7.3 79 185-265 3-83 (313)
318 1p99_A Hypothetical protein PG 44.7 1.3E+02 0.0045 30.7 11.1 188 515-827 53-272 (295)
319 4gd5_A Phosphate ABC transport 44.3 28 0.00096 35.4 6.0 48 36-94 24-71 (279)
320 3d8u_A PURR transcriptional re 44.2 32 0.0011 34.4 6.5 78 184-265 4-83 (275)
321 1jx6_A LUXP protein; protein-l 43.4 40 0.0014 35.2 7.3 82 184-265 44-129 (342)
322 2rjo_A Twin-arginine transloca 43.2 34 0.0012 35.6 6.6 79 184-265 6-89 (332)
323 2x7x_A Sensor protein; transfe 42.7 61 0.0021 33.5 8.5 80 183-265 6-88 (325)
324 2hsg_A Glucose-resistance amyl 42.6 45 0.0015 34.6 7.5 79 183-265 60-140 (332)
325 3p6l_A Sugar phosphate isomera 42.5 73 0.0025 31.6 8.8 93 172-265 25-129 (262)
326 2rgy_A Transcriptional regulat 42.3 31 0.0011 35.1 6.0 80 182-265 7-91 (290)
327 1ccw_A Protein (glutamate muta 41.9 78 0.0027 28.0 7.8 85 185-276 5-93 (137)
328 3gv0_A Transcriptional regulat 41.2 38 0.0013 34.3 6.5 81 181-265 6-90 (288)
329 3c3k_A Alanine racemase; struc 41.1 68 0.0023 32.3 8.4 79 182-265 7-87 (285)
330 3rvy_A ION transport protein; 41.0 17 0.0006 37.1 3.8 58 640-697 178-243 (285)
331 3bil_A Probable LACI-family tr 41.0 42 0.0014 35.3 6.9 79 183-265 66-146 (348)
332 2vk2_A YTFQ, ABC transporter p 40.9 38 0.0013 34.7 6.5 79 184-265 3-84 (306)
333 4euo_A ABC transporter, substr 40.8 2.6E+02 0.0089 28.4 13.1 83 738-825 176-258 (320)
334 3dnf_A ISPH, LYTB, 4-hydroxy-3 40.7 45 0.0015 33.9 6.5 52 92-143 186-239 (297)
335 3mwb_A Prephenate dehydratase; 40.6 60 0.0021 33.5 7.6 85 712-802 6-101 (313)
336 1oj7_A Hypothetical oxidoreduc 40.4 30 0.001 37.5 5.7 83 174-260 43-128 (408)
337 2qsx_A Putative transcriptiona 40.1 1.7E+02 0.0058 27.6 10.9 80 485-593 19-98 (218)
338 3lmz_A Putative sugar isomeras 39.5 67 0.0023 31.9 7.9 94 171-265 32-127 (257)
339 1jye_A Lactose operon represso 39.5 67 0.0023 33.6 8.3 66 181-248 59-126 (349)
340 3gyb_A Transcriptional regulat 39.4 54 0.0019 32.8 7.3 115 52-178 120-242 (280)
341 2klu_A T-cell surface glycopro 39.2 82 0.0028 23.6 5.8 12 860-871 13-24 (70)
342 2vd3_A ATP phosphoribosyltrans 39.1 26 0.00088 35.6 4.4 102 701-815 105-208 (289)
343 3sya_A G protein-activated inw 39.0 34 0.0012 35.8 5.5 60 640-699 89-152 (340)
344 3pzy_A MOG; ssgcid, seattle st 38.9 47 0.0016 30.6 6.0 62 184-248 8-74 (164)
345 2nr1_A NR1 M2, M2; receptor, s 38.4 8.3 0.00028 23.1 0.4 19 640-658 6-24 (27)
346 1gud_A ALBP, D-allose-binding 38.3 51 0.0018 33.3 6.9 81 184-265 2-85 (288)
347 3iwt_A 178AA long hypothetical 38.2 58 0.002 30.4 6.7 62 185-248 17-89 (178)
348 3hs3_A Ribose operon repressor 37.8 49 0.0017 33.2 6.6 68 178-248 5-75 (277)
349 1y80_A Predicted cobalamin bin 37.8 1.1E+02 0.0038 29.3 8.9 86 184-275 89-178 (210)
350 3out_A Glutamate racemase; str 37.4 83 0.0028 31.7 8.0 39 106-144 60-99 (268)
351 3mz1_A Putative transcriptiona 37.3 43 0.0015 33.7 6.2 80 485-593 88-167 (300)
352 3fni_A Putative diflavin flavo 37.3 1.6E+02 0.0055 26.6 9.5 84 184-275 5-95 (159)
353 3cg1_A UPF0100 protein PF0080; 37.2 1.7E+02 0.0058 29.5 10.8 70 515-593 20-100 (296)
354 3miz_A Putative transcriptiona 36.6 78 0.0027 32.1 8.1 73 175-250 5-80 (301)
355 2jfz_A Glutamate racemase; cel 36.5 61 0.0021 32.4 6.9 38 107-144 54-91 (255)
356 3clk_A Transcription regulator 36.2 34 0.0012 34.7 5.2 79 183-265 8-89 (290)
357 2qmw_A PDT, prephenate dehydra 35.7 79 0.0027 31.7 7.4 83 713-802 4-97 (267)
358 3hcw_A Maltose operon transcri 35.4 39 0.0013 34.4 5.5 79 183-265 7-92 (295)
359 2fp4_A Succinyl-COA ligase [GD 35.1 3.8E+02 0.013 27.3 13.7 145 99-262 79-234 (305)
360 1dbq_A Purine repressor; trans 34.9 82 0.0028 31.6 7.9 64 183-249 7-72 (289)
361 2g2c_A Putative molybdenum cof 34.7 50 0.0017 30.5 5.4 62 185-248 7-77 (167)
362 3l4e_A Uncharacterized peptida 34.3 79 0.0027 30.3 7.0 96 172-276 16-120 (206)
363 2l2t_A Receptor tyrosine-prote 34.1 54 0.0019 22.6 3.9 8 874-881 32-39 (44)
364 2vpn_A Periplasmic substrate b 33.3 69 0.0024 33.1 7.0 102 700-813 130-233 (316)
365 4exl_A PBP 1, phosphate-bindin 33.2 49 0.0017 33.3 5.6 71 513-593 17-91 (265)
366 3dmy_A Protein FDRA; predicted 33.0 5.2E+02 0.018 28.3 15.3 78 183-264 112-198 (480)
367 3qk7_A Transcriptional regulat 32.9 52 0.0018 33.4 5.9 79 182-265 5-89 (294)
368 3spc_A Inward-rectifier K+ cha 32.8 68 0.0023 33.6 6.6 60 640-699 92-155 (343)
369 1nrz_A PTS system, sorbose-spe 32.7 1.3E+02 0.0044 27.6 7.7 80 170-257 14-93 (164)
370 3ukm_A Potassium channel subfa 32.5 32 0.0011 34.8 4.0 55 641-695 92-148 (280)
371 2b4l_A Glycine betaine-binding 32.5 63 0.0021 32.6 6.2 58 483-563 163-220 (268)
372 3brs_A Periplasmic binding pro 32.2 3.5E+02 0.012 26.7 12.2 119 50-178 131-257 (289)
373 3i42_A Response regulator rece 31.5 1.4E+02 0.0049 25.0 7.9 70 198-276 14-85 (127)
374 3bbl_A Regulatory protein of L 31.5 47 0.0016 33.6 5.3 78 184-265 5-88 (287)
375 3kbq_A Protein TA0487; structu 31.4 81 0.0028 29.3 6.2 61 185-248 5-70 (172)
376 3tsm_A IGPS, indole-3-glycerol 31.1 2.5E+02 0.0085 28.2 10.3 88 171-266 81-171 (272)
377 3ezx_A MMCP 1, monomethylamine 31.0 1.5E+02 0.0052 28.5 8.5 87 184-276 93-185 (215)
378 3hhg_A Transcriptional regulat 30.7 31 0.0011 35.1 3.8 67 512-593 106-172 (306)
379 1i4n_A Indole-3-glycerol phosp 30.5 1.6E+02 0.0056 29.1 8.7 87 171-266 63-152 (251)
380 3jvd_A Transcriptional regulat 30.5 3.9E+02 0.013 27.3 12.5 115 51-178 175-297 (333)
381 3o1i_D Periplasmic protein TOR 30.4 40 0.0014 34.3 4.5 80 184-265 6-88 (304)
382 3rf7_A Iron-containing alcohol 30.3 80 0.0028 33.6 6.9 83 174-260 41-131 (375)
383 2hpg_A ABC transporter, peripl 30.2 64 0.0022 33.6 6.0 60 700-770 148-207 (327)
384 4ep1_A Otcase, ornithine carba 30.0 4.9E+02 0.017 27.0 12.6 132 51-218 71-210 (340)
385 1vsq_C Mannose-specific phosph 29.9 1.2E+02 0.004 27.9 7.0 81 170-258 17-97 (165)
386 1qpz_A PURA, protein (purine n 29.5 1.6E+02 0.0055 30.4 9.3 68 179-249 54-123 (340)
387 4a8t_A Putrescine carbamoyltra 29.4 5E+02 0.017 26.9 14.2 131 51-217 64-205 (339)
388 2qmx_A Prephenate dehydratase; 29.2 1.3E+02 0.0045 30.4 7.9 79 712-802 6-95 (283)
389 3lte_A Response regulator; str 29.1 1.3E+02 0.0046 25.4 7.3 58 198-264 17-76 (132)
390 1jlj_A Gephyrin; globular alph 28.7 1.2E+02 0.004 28.7 7.0 68 179-248 10-86 (189)
391 1byk_A Protein (trehalose oper 28.4 83 0.0028 30.9 6.4 63 184-249 3-67 (255)
392 4es6_A Uroporphyrinogen-III sy 28.2 32 0.0011 34.4 3.2 84 170-262 115-206 (254)
393 3okf_A 3-dehydroquinate syntha 28.0 98 0.0033 33.1 7.0 95 177-276 56-158 (390)
394 3iv7_A Alcohol dehydrogenase I 27.9 39 0.0013 35.9 3.9 82 172-259 26-109 (364)
395 4a8p_A Putrescine carbamoyltra 27.7 5.4E+02 0.019 26.8 14.5 132 51-218 42-184 (355)
396 3gt7_A Sensor protein; structu 27.5 1.6E+02 0.0055 25.9 7.7 58 198-264 18-77 (154)
397 3gl9_A Response regulator; bet 27.2 1.4E+02 0.0048 25.0 6.9 58 198-264 13-72 (122)
398 4a29_A Engineered retro-aldol 26.9 2.1E+02 0.0073 28.3 8.5 85 174-267 69-156 (258)
399 3r7f_A Aspartate carbamoyltran 26.6 3.3E+02 0.011 27.8 10.3 134 51-217 37-179 (304)
400 3cvg_A Putative metal binding 26.4 26 0.00089 36.0 2.1 74 512-594 33-116 (294)
401 3kn3_A Putative periplasmic pr 26.4 27 0.00092 34.7 2.1 74 511-593 18-94 (242)
402 3umf_A Adenylate kinase; rossm 26.4 27 0.00093 34.0 2.1 31 115-145 30-60 (217)
403 1sg6_A Pentafunctional AROM po 25.7 1.6E+02 0.0055 31.4 8.4 94 178-276 31-140 (393)
404 3sr0_A Adenylate kinase; phosp 25.7 33 0.0011 33.1 2.6 30 116-145 2-31 (206)
405 3eye_A PTS system N-acetylgala 25.6 1.5E+02 0.005 27.4 6.7 81 170-259 19-100 (168)
406 2qip_A Protein of unknown func 25.5 3.7E+02 0.013 24.3 9.8 92 173-265 37-134 (165)
407 3tpf_A Otcase, ornithine carba 25.5 5.5E+02 0.019 26.1 14.0 131 52-218 38-177 (307)
408 3t6k_A Response regulator rece 25.1 2.1E+02 0.0073 24.4 7.9 58 198-264 15-74 (136)
409 3cs3_A Sugar-binding transcrip 25.0 2.7E+02 0.0093 27.4 9.8 114 52-178 120-243 (277)
410 1uuy_A CNX1, molybdopterin bio 24.3 77 0.0027 29.2 4.8 63 184-248 6-79 (167)
411 3gd5_A Otcase, ornithine carba 23.9 6E+02 0.021 26.1 13.7 132 51-218 49-188 (323)
412 2xwv_A Sialic acid-binding per 23.8 1.4E+02 0.0047 30.8 7.2 60 700-770 133-192 (312)
413 3lfj_A Manxb, phosphotransfera 23.4 1.3E+02 0.0043 28.4 5.9 82 170-259 35-116 (187)
414 4ecf_A ABC-type phosphate tran 23.0 70 0.0024 32.1 4.6 72 513-594 17-92 (264)
415 1ble_A Fructose permease; phos 22.9 1.2E+02 0.0042 27.7 5.7 80 170-257 15-94 (163)
416 3to5_A CHEY homolog; alpha(5)b 22.7 2.6E+02 0.0089 24.4 7.8 66 188-264 16-83 (134)
417 2h0a_A TTHA0807, transcription 22.7 35 0.0012 34.3 2.2 75 186-264 2-78 (276)
418 1xrs_B D-lysine 5,6-aminomutas 22.6 4.1E+02 0.014 26.4 9.9 99 172-276 107-223 (262)
419 1xah_A Sadhqs, 3-dehydroquinat 22.3 88 0.003 33.0 5.4 110 158-277 11-126 (354)
420 1kq3_A Glycerol dehydrogenase; 22.3 31 0.001 37.0 1.7 93 174-276 33-127 (376)
421 3grc_A Sensor protein, kinase; 22.3 1.4E+02 0.0047 25.7 6.0 57 198-263 17-75 (140)
422 2qu7_A Putative transcriptiona 22.2 1.2E+02 0.0039 30.5 6.2 64 183-249 8-72 (288)
423 4evq_A Putative ABC transporte 22.2 1.9E+02 0.0067 30.0 8.3 81 182-265 15-107 (375)
424 2pbq_A Molybdenum cofactor bio 22.1 1.7E+02 0.0059 27.1 6.8 61 185-248 7-76 (178)
425 2csu_A 457AA long hypothetical 21.9 2E+02 0.0067 31.5 8.2 145 99-264 72-227 (457)
426 3ctp_A Periplasmic binding pro 21.7 1.2E+02 0.0043 31.1 6.5 65 181-249 58-124 (330)
427 3qja_A IGPS, indole-3-glycerol 21.6 2.4E+02 0.0083 28.2 8.2 88 171-266 74-164 (272)
428 1y81_A Conserved hypothetical 21.6 85 0.0029 27.8 4.3 34 240-276 69-102 (138)
429 3lft_A Uncharacterized protein 21.2 1.8E+02 0.006 29.3 7.4 65 184-249 3-71 (295)
430 1di6_A MOGA, molybdenum cofact 21.2 1.7E+02 0.0057 27.8 6.5 63 184-248 4-74 (195)
431 3omb_A Extracellular solute-bi 21.0 75 0.0026 35.7 4.8 29 205-241 172-200 (535)
432 2i2x_B MTAC, methyltransferase 21.0 4.3E+02 0.015 26.0 10.0 83 184-275 124-211 (258)
433 3kht_A Response regulator; PSI 20.9 3.9E+02 0.013 22.7 11.2 71 198-275 16-88 (144)
434 5nul_A Flavodoxin; electron tr 20.6 2.8E+02 0.0097 23.9 7.8 82 186-279 1-91 (138)
435 3p3v_A PTS system, N-acetylgal 20.5 1.5E+02 0.0053 27.1 5.8 80 170-259 18-97 (163)
436 2qh8_A Uncharacterized protein 20.4 1.6E+02 0.0055 29.8 6.9 64 183-249 8-78 (302)
437 3szu_A ISPH, 4-hydroxy-3-methy 20.4 90 0.0031 32.2 4.6 50 94-143 204-255 (328)
438 4amu_A Ornithine carbamoyltran 20.2 6E+02 0.021 26.6 11.0 132 51-217 72-211 (365)
439 1pii_A N-(5'phosphoribosyl)ant 20.2 2.1E+02 0.007 31.2 7.7 88 171-267 70-160 (452)
No 1
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=100.00 E-value=4.3e-98 Score=929.21 Aligned_cols=770 Identities=22% Similarity=0.341 Sum_probs=635.0
Q ss_pred ceEEEEEEeccCCccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCC-ChHHHHHHHHHHHhcCcEEEEccCChhH
Q 002267 49 SSVRIGALFTYDSVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNC-SGFVGTMEALQLMENEVVAAIGPQSSGI 127 (945)
Q Consensus 49 ~~i~IG~l~~l~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~-~~~~a~~~a~~li~~~v~aiiGp~~s~~ 127 (945)
++|+||+++|++.. ....|+++|+|+||+++ ++|+++++|+++ ++..+.++++++++++|.|||||.+|..
T Consensus 1 ~~ikIG~l~~~tg~---~~~~a~~lAveeiN~~~-----~~l~~~~~D~~~~~~~~a~~~~~~l~~~~V~aiiG~~~S~~ 72 (823)
T 3kg2_A 1 NSIQIGGLFPRGAD---QEYSAFRVGMVQFSTSE-----FRLTPHIDNLEVANSFAVTNAFCSQFSRGVYAIFGFYDKKS 72 (823)
T ss_dssp CEEEEEEEEETTCH---HHHHHHHHHHHHTCCSS-----CEEEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCTTT
T ss_pred CcceEEEEeCCCCh---HHHHHHHHHHHHHhcCC-----eEEEEEEEEcCCCChHHHHHHHHHHHhcCcEEEEcCCChhH
Confidence 37999999999865 78999999999999986 799999999999 9999999999999999999999999999
Q ss_pred HHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEeCCcccchHHHHHHHH
Q 002267 128 AHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDDYGRNGISVLGDAL 207 (945)
Q Consensus 128 ~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l 207 (945)
+.+++++++.++||+|++ +.+.. ..+||+||+.|+ ++.++++++++|||++|++|| |++||...++.+.+++
T Consensus 73 ~~a~~~i~~~~~iP~is~--~~~~~--~~~~~~~r~~p~---~~~a~~~l~~~~gw~~v~ii~-d~~~g~~~~~~~~~~~ 144 (823)
T 3kg2_A 73 VNTITSFCGTLHVSFITP--SFPTD--GTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSA 144 (823)
T ss_dssp HHHHHHHHHHTTCEEEEC--SCCCS--SCCSSEEECSCC---CHHHHHHHHHHTTCSEEEEEE-CGGGCTHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCceeec--ccCCC--CCCceEEEeCCC---HHHHHHHHHHHCCCCEEEEEE-eCChhHHHHHHHHHHh
Confidence 999999999999999997 33333 357999999998 889999999999999999999 8889999999999999
Q ss_pred hhcCcEEEEeecCCCC--CChHHHHHHHHhhccCCceEEEEEcChhhHHHHHHHHHhCCCCCCCeEEEEeCCCccccCCC
Q 002267 208 SKKRAKISYKAPFSPG--ASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIATDWLPSVLDST 285 (945)
Q Consensus 208 ~~~g~~v~~~~~~~~~--~~~~d~~~~l~~l~~~~~~vivl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~~~ 285 (945)
++.|+||++.+.++.. .+..|+..++++|+++++|+||+++..+++..++++|+++||++++|+||.+++.....+.
T Consensus 145 ~~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~~- 223 (823)
T 3kg2_A 145 AEKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDL- 223 (823)
T ss_dssp HHTTCEEEEEECSSCCSSSTTTTTTTHHHHTTTTTCCEEEEECCHHHHHHHHHHHHHHTTTBTTCEEEECSSBSSSSCC-
T ss_pred hccCCceEEEEeecCCCCccchhHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCcCCCCeEEEEecccccccch-
Confidence 9999999999887743 2378899999999999999999999999999999999999999999999999854333222
Q ss_pred CCCChhHHhhhcceeEEEeecCCCchhhHHHHHHHhhhcCC---CCCCCCchhHHHHHHHHHHHHHHHHHHHhcCCcccc
Q 002267 286 EPVDIDTMNLLQGVVALRHHTPDTDLKKNFISRWKNLKYKE---NSPSGFNSYALYAYDSVWLVAHALDALLNEGGKFTF 362 (945)
Q Consensus 286 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~f~~~~~~~~~~~---~~~~~~~~~~~~~YDav~~la~Al~~~~~~~~~~~~ 362 (945)
++..+...|++++.++.++++.+++|.++|++++... .....++.+++++||||+++|+|+++++.++.+...
T Consensus 224 ----~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~la~Al~~~~~~~~~~~~ 299 (823)
T 3kg2_A 224 ----LKIQFGGAEVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISR 299 (823)
T ss_dssp ----SSSSSSBCEEEEEESSCTTSHHHHHHHHHHTTSCTTTSTTCCSSCCCHHHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred ----HHhhcCCCCceEeeeecCCchHHHHHHHHHHhhcccccCCCCccccchhhHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 1223445678999999999999999999999987422 122346788999999999999999999876554422
Q ss_pred cCCCCCCCCCCCccccCCc--cccCchHHHHHHHHhcccccceeeEEEccCCCCCCCcEEEEEeeccceEEEEEecCCCC
Q 002267 363 SNDPKLHDTNGSMLNLSSL--RVFDGGQQFLQTLLRMNFTGLSGEIRFDADKNLVNPAYDVLNIGGTGSRRIGYWSNYSG 440 (945)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~f~G~sG~v~fd~~g~~~~~~y~i~~~~~~~~~~Vg~w~~~~g 440 (945)
+ +.+..|... ..|.+|++|.++|++++|+|++|+++||++|++....|+|++++++++++||+|++..|
T Consensus 300 ~---------~~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~I~~~~~~g~~~vg~w~~~~g 370 (823)
T 3kg2_A 300 R---------GNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDK 370 (823)
T ss_dssp S---------SCCCCTTCSSCCCCTHHHHHHHHHTTCCCEETTEECCBCSSSCBCSCEEEEEEECSSCEEEEEEEETTTE
T ss_pred C---------CCCCCccCCCCCcccchHHHHHHHHhcccCCcccCeEECCCCcccccEEEEEEEcCCCCeeEEEEcCCCC
Confidence 1 112233333 45678999999999999999999999999999999999999999999999999999887
Q ss_pred cccccccccccCCCCCCCCCcceeeEeCCCcccCCcceeccCCCCceEEEecCccccccceec---cCCCCceeeeeHHH
Q 002267 441 LSVVAPEILYTKPPNSSSNRHLYSVIWPGEITATPRGWVFPNNGMPLRIAVPNRVSYNEFVAK---DKSPPGVKGYCIDV 517 (945)
Q Consensus 441 l~~~~~~~~~~~~~~~~~~~~l~~i~W~g~~~~~P~~~~~~~~g~~l~v~~~~~~~~~~~~~~---~~~~~~~~G~~~dl 517 (945)
+....+ . ....+|++|+|++...+||..+... .++++++.|||+||
T Consensus 371 ~~~~~~-----------------------------~--~~~~~~~~l~v~~~~~~P~~~~~~~~~~~~~~~~~~G~~~dl 419 (823)
T 3kg2_A 371 MVLTED-----------------------------D--TSGLEQKTVVVTTILESPYVMMKANHAALAGNERYEGYCVDL 419 (823)
T ss_dssp EEECCC-----------------------------C--CSSCCCCCEEEEECCCTTTSEECTTGGGCCGGGGEESHHHHH
T ss_pred ceeccC-----------------------------c--ccccCCCEEEEEEecCCCcEEEecCccccCCCCceEEEHHHH
Confidence 653211 0 0123578999999665544332111 02467899999999
Q ss_pred HHHHHHhCCCCccEEEEE---cCCC-CCCCCHHHHHHHHHcCcccEEEecEEEecCcceeEEecccccccceEEEEEccC
Q 002267 518 FEAAVNLLPYPVPHNYIM---YGNG-KRNPIYNDIVQQVALNKFDAAVGDITIVTNRTKLVDFTQPYMESGLVVVAPVQK 593 (945)
Q Consensus 518 l~~l~~~l~~~~~~~~~~---~~~~-~~~~~~~~~i~~l~~g~~D~~~~~~~~t~~r~~~~dfs~p~~~~~~~~vv~~~~ 593 (945)
++++++++||+++++.++ +|.. ..|++|++++++|.+|++|++++++++|.+|.+.+|||.||+.+++++++|++.
T Consensus 420 ~~~~a~~l~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~l~~~~~D~~~~~~~~t~~R~~~~dfs~py~~~~~~~~v~~~~ 499 (823)
T 3kg2_A 420 AAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELVYGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQ 499 (823)
T ss_dssp HHHHHHHHTCCEEEEECSSCCCCCBCTTTCCBCHHHHHHHTTSCSEECSCCBCCHHHHTTEEECSCSEEECEEEEEECCC
T ss_pred HHHHHHHcCCcEEEEEccCCcccccCCCCCchhhHHHhhccccCcEEecceecchhheeeEEeccchhhCCEEEEEECCC
Confidence 999999999985555544 3321 246889999999999999999999999999999999999999999999999987
Q ss_pred -CCCCceeeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCC--------------ccchhhHHHHHHHHhhccc
Q 002267 594 -LKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEFRGPP--------------SQQLVTIFWFSFSTMFFSH 658 (945)
Q Consensus 594 -~~~~~~~fl~PF~~~~W~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--------------~~~~~~~~~~~~~~l~~~~ 658 (945)
..++++.|++||++.+|++++++++++++++|+++|+.+.+|+.+. ..++.+++|++++++++++
T Consensus 500 ~~~~~~~~fl~Pf~~~vW~~i~~~~~~~~~~l~~~~~~~p~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g 579 (823)
T 3kg2_A 500 KSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTEEFEDGRETQSSESTNEFGIFNSLWFSLGAFMQQG 579 (823)
T ss_dssp CCCCCGGGTTTTSCHHHHHHHHHHHHHHHTTGGGTC-----------------------CHHHHHHHHHHHTTTTSCC--
T ss_pred cccccchHhhcCCchhHHHHHHHHHHHHHHHHHHHHhcChhhccCcccccccccccccccccccHHHHHHHHHHHHHhcC
Confidence 4578999999999999999999999999999999998755543221 2347799999999999887
Q ss_pred cC-cccccchhhHHHHHHHHHHhhhhhhhhhhheeeeeccccCCCCChHHhhcCC-CCeEEeeCchHHHHHHHhhcccc-
Q 002267 659 RE-NTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISST-EPIGVQDGSFAWNYLVDELKIAE- 735 (945)
Q Consensus 659 ~~-~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~~~~dL~~~~-~~v~~~~~s~~~~~l~~~~~~~~- 735 (945)
.. .|++.++|+++++|+|++||++++|||+|+|+||++++.++|++++||.+++ ..+++..++....++.+.. ...
T Consensus 580 ~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~I~s~~dL~~~~~i~~~~~~~~~~~~~~~~~~-~~~~ 658 (823)
T 3kg2_A 580 ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTVERMVSPIESAEDLSKQTEIAYGTLDSGSTKEFFRRSK-IAVF 658 (823)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSHHHHHCCSSEEECBSSSHHHHHHHHCC-CHHH
T ss_pred CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCHHHHhhCCCeeEEEEeCCcHHHHHHhcc-chHH
Confidence 54 7999999999999999999999999999999999999999999999999865 3567676777777775421 111
Q ss_pred c----------cceecCCHHHHHHHHhcCCCCCceeEEecchhhHHHHhccCCccEEEeCccccccceEEEecCCCcchH
Q 002267 736 S----------RLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVGQEFTKSGWGFAFQRDSPLAI 805 (945)
Q Consensus 736 ~----------~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~spl~~ 805 (945)
. ..+.+.+.+++++.+.+. ++.+|++.+.+.++|+.++..|+++.+++.+...++++++||||||++
T Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~~~~y~~~~~~c~l~~v~~~~~~~~~~~~~~k~spl~~ 735 (823)
T 3kg2_A 659 DKMWTYMRSAEPSVFVRTTAEGVARVRKS---KGKYAYLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPKGSSLGT 735 (823)
T ss_dssp HHHHHHHHHCSSCCCBSSHHHHHHHHHTT---TTSEEEEEEHHHHHHHHTSTTCCEEEESCCSSCEEECCEEETTCSSHH
T ss_pred HHHHHHHHhcCCccccCCHHHHHHHHhcc---CCceEEEechHHHHHHHhcCCCceEEccccccccceeEeecCCChHHH
Confidence 0 112346899999999721 567899999999999888756999999999999999999999999999
Q ss_pred HHHHHHHhccccccHHHHHHHhcC-CCCCCCCCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 002267 806 DLSTAILQLSENGDLQKIHNKWLT-YNECSMDLSPADGGGSRLSLKSFWGLFLICGIACFLALIFFFCRVCGQFRRFGS 883 (945)
Q Consensus 806 ~i~~~i~~l~e~G~~~~i~~~w~~-~~~c~~~~~~~~~~~~~L~l~~~~g~f~i~~~g~~lal~vf~~e~~~~~~~~~~ 883 (945)
.||++|++|.|+|++++|+++|+. ...|............+|+++++.|+|+++++|+++|+++|++|++|+++++++
T Consensus 736 ~~~~~il~l~e~G~~~~~~~~w~~~~~~c~~~~~~~~~~~~~L~l~~l~g~f~il~~g~~la~~vf~~E~~~~~~~~~~ 814 (823)
T 3kg2_A 736 PVNLAVLKLSEQGLLDKLKNKWWYDKGECGAKDSGSKEKTSALSLSNVAGVFYILVGGLGLAMLVALIEFCYKSRAEAK 814 (823)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHTTSCSCSSTTTSTTTCCCSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHhCCcHHHHHHhhCcCCCCCCCCCccccccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHcchhhh
Confidence 999999999999999999999997 678987654433366799999999999999999999999999999998877654
No 2
>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A
Probab=100.00 E-value=6.6e-51 Score=457.93 Aligned_cols=372 Identities=17% Similarity=0.282 Sum_probs=318.7
Q ss_pred CceEEEEEEeccCCccccchHHHHHHHHHHHhcCCCC-CCCcEEEEEEecCCC-ChHHHHHHHHHHHhcCcEEEEccCCh
Q 002267 48 PSSVRIGALFTYDSVIGRAAGPAIAAAVDDVNSDPSI-LPGTTLNFVIRDTNC-SGFVGTMEALQLMENEVVAAIGPQSS 125 (945)
Q Consensus 48 ~~~i~IG~l~~l~~~~g~~~~~a~~~Ave~iN~~~~i-l~g~~l~l~~~D~~~-~~~~a~~~a~~li~~~v~aiiGp~~s 125 (945)
+++|+||+++|++.. ..+.|+++|+|+||+++++ |+|++|+++++|++| |+..+++.+++|++++|.+||||.+|
T Consensus 3 ~~~i~IG~i~~~sg~---~~~~a~~lAv~eiN~~g~ill~g~~l~~~~~D~~~~d~~~a~~~a~~li~~~V~aiiG~~~S 79 (389)
T 3o21_A 3 PNTISIGGLFMRNTV---QEHSAFRFAVQLYNTNQNTTEKPFHLNYHVDHLDSSNSFSVTNAFCSQFSRGVYAIFGFYDQ 79 (389)
T ss_dssp CSEEEEEEEECTTCH---HHHHHHHHHHHHHHSCCCTTTCSSEEEEEEEECCTTCHHHHHHHHHHHHTTTCSCEEECCCT
T ss_pred CceeEEEEEeCCCCH---HHHHHHHHHHHHHhcCccccCCCcEEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEeCCCh
Confidence 579999999999865 7899999999999999999 699999999999998 99999999999999999999999999
Q ss_pred hHHHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEeCCcccchHHHHHH
Q 002267 126 GIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDDYGRNGISVLGD 205 (945)
Q Consensus 126 ~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~ 205 (945)
..+.+++++++.++||+|+++. |.++ ..+|.||+.|+ |+.+++++++++||++|++|| |++||...++.+.+
T Consensus 80 ~~~~a~~~i~~~~~iP~Is~s~--~~~~--~~~~~~~~~p~---~~~a~~~~~~~~gw~~vaii~-d~~~g~~~~~~~~~ 151 (389)
T 3o21_A 80 MSMNTLTSFCGALHTSFVTPSF--PTDA--DVQFVIQMRPA---LKGAILSLLSYYKWEKFVYLY-DTERGFSVLQAIME 151 (389)
T ss_dssp TTHHHHHHHHHHHTCCEEECSC--CCSS--CCSSEEECSCC---SHHHHHHHHHHHTCCEEEEEE-CSTTCSHHHHHHHH
T ss_pred hHHHHHHHHhccCCCceeecCC--CCcc--CCceEEEEccC---HHHHHHHHHHhCCCCEEEEEE-cCcHHHHHHHHHHH
Confidence 9999999999999999998754 4443 34667777776 899999999999999999999 88999999999999
Q ss_pred HHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcChhhHHHHHHHHHhCCCCCCCeEEEEeCCCccccCCC
Q 002267 206 ALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIATDWLPSVLDST 285 (945)
Q Consensus 206 ~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~~~ 285 (945)
++++.|+||+..+.++. .+..|++.+|++|+++++|+||+++....+..++++++++||+.++|+||.++.+....+.
T Consensus 152 ~~~~~g~~v~~~~~~~~-~~~~d~~~~l~~ik~~~~~vii~~~~~~~~~~i~~qa~~~g~~~~~~~~i~~~~~~~~~~~- 229 (389)
T 3o21_A 152 AAVQNNWQVTARSVGNI-KDVQEFRRIIEEMDRRQEKRYLIDCEVERINTILEQVVILGKHSRGYHYMLANLGFTDILL- 229 (389)
T ss_dssp HHHHTTCEEEEEECTTC-CCTHHHHHHHHHHHTTTCCEEEEESCHHHHHHHHHHHHHHCSCSTTCEEEECCTTGGGCCC-
T ss_pred HhhcCCCeEEEEEecCC-CCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCcccCCeEEEEccCCcccccH-
Confidence 99999999999887753 2456899999999999999999999999999999999999999999999998854433332
Q ss_pred CCCChhHHhhhcceeEEEeecCCCchhhHHHHHHHhhhcCCC---CCCCCchhHHHHHHHHHHHHHHHHHHHhcCCcccc
Q 002267 286 EPVDIDTMNLLQGVVALRHHTPDTDLKKNFISRWKNLKYKEN---SPSGFNSYALYAYDSVWLVAHALDALLNEGGKFTF 362 (945)
Q Consensus 286 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~f~~~~~~~~~~~~---~~~~~~~~~~~~YDav~~la~Al~~~~~~~~~~~~ 362 (945)
.+......|++++..+.++++.+++|+++|++++.... ....++.+++++||||+++|+|++++..++..+++
T Consensus 230 ----~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~a~~~YDAv~~~a~Al~~~~~~~~~~~~ 305 (389)
T 3o21_A 230 ----ERVMHGGANITGFQIVNNENPMVQQFIQRWVRLDEREFPEAKNAPLKYTSALTHDAILVIAEAFRYLRRQRVDVSR 305 (389)
T ss_dssp ----HHHHHTTCEEEEEESCCTTCHHHHHHHHHHTTSCTTTSTTSSSSCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCC-
T ss_pred ----HHHhcCCcceEEEEEecCCChhHHHHHHHHHhccccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhCccccc
Confidence 23445667899999899999999999999999873211 11245789999999999999999999876544321
Q ss_pred cCCCCCCCCCCCcccc--CCccccCchHHHHHHHHhcccccceeeEEEccCCCCCCCcEEEEEeeccceEEEEEecCCCC
Q 002267 363 SNDPKLHDTNGSMLNL--SSLRVFDGGQQFLQTLLRMNFTGLSGEIRFDADKNLVNPAYDVLNIGGTGSRRIGYWSNYSG 440 (945)
Q Consensus 363 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~f~G~sG~v~fd~~g~~~~~~y~i~~~~~~~~~~Vg~w~~~~g 440 (945)
. +.+..| ....+|.+|.+|+++|++++|+|++|+++||++|++....|+|+++.++++++||+|++.+|
T Consensus 306 ~---------~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~Fd~~G~~~~~~~~i~~~~~~g~~~VG~w~~~~g 376 (389)
T 3o21_A 306 R---------GSAGDCLANPAVPWSQGIDIERALKMVQVQGMTGNIQFDTYGRRTNYTIDVYEMKVSGSRKAGYWNEYER 376 (389)
T ss_dssp -------------CCSCSSSCCCTTTTHHHHHHHHTCCEEETTEEECBCTTSBBCSCCEEEEEEETTEEEEEEEEETTTE
T ss_pred C---------CCCCcCCCCCCCCCCCcHHHHHHHHhCcccccceeeeeCCCCCcccceEEEEEEcCCCceeeeEEcCCCC
Confidence 1 111223 33466888999999999999999999999999999988899999999999999999999999
Q ss_pred ccccc
Q 002267 441 LSVVA 445 (945)
Q Consensus 441 l~~~~ 445 (945)
|++..
T Consensus 377 ~~~~~ 381 (389)
T 3o21_A 377 FVPFS 381 (389)
T ss_dssp EECC-
T ss_pred ccccC
Confidence 87553
No 3
>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*
Probab=100.00 E-value=5e-50 Score=459.25 Aligned_cols=388 Identities=19% Similarity=0.325 Sum_probs=327.8
Q ss_pred CCCceEEEEEEeccCC-----ccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc--CcEE
Q 002267 46 SRPSSVRIGALFTYDS-----VIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMEN--EVVA 118 (945)
Q Consensus 46 ~~~~~i~IG~l~~l~~-----~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~--~v~a 118 (945)
...++|+||+++|++. ..|+....|+++|+|+||++ |+++|++|+++++|++|++..|+..+++|+++ +|.+
T Consensus 10 ~~~~~i~IG~~~plsG~~a~~~~g~~~~~~~~lAv~~iN~~-g~l~g~~l~l~~~D~~~~~~~a~~~a~~li~~~~~v~a 88 (433)
T 4f11_A 10 PSSPPLSIMGLMPLTKEVAKGSIGRGVLPAVELAIEQIRNE-SLLRPYFLDLRLYDTECDNAKGLKAFYDAIKYGPNHLM 88 (433)
T ss_dssp -CCCEEEEEEEECCCTTSTTHHHHHHHHHHHHHHHHHHHHT-TTTTTCEEEEEEEECTTCHHHHHHHHHHHHHHSCCCSE
T ss_pred CCCCceEEEEEEEecCCCCCCccchhHHHHHHHHHHHHhcc-CCCCCCEEEEEEecCCCCHHHHHHHHHHHHhcCCceEE
Confidence 3567999999999994 56888999999999999999 77789999999999999999999999999985 8999
Q ss_pred EEccCChhHHHHHHHhhcccCccEEecccCCCCCCC-CCCCceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEeCCccc
Q 002267 119 AIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTS-LQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDDYGR 197 (945)
Q Consensus 119 iiGp~~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~-~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~ 197 (945)
||||.+|..+.+++++++.+++|+|+++++++.+++ .+|||+||+.|++..++.+++++++++||++|++||+|++||.
T Consensus 89 viG~~~S~~~~a~~~~~~~~~ip~is~~~~~~~l~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~g~~~v~ii~~~~~~g~ 168 (433)
T 4f11_A 89 VFGGVCPSVTSIIAESLQGWNLVQLSFAATTPVLADKKKYPYFFRTVPSDNAVNPAILKLLKHYQWKRVGTLTQDVQRFS 168 (433)
T ss_dssp EEECCSHHHHHHHHHTHHHHTCEEEESSCCCGGGGCTTTCTTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHHH
T ss_pred EECCCcchHHHHHHHHHHhcCceEEEcccCCccccccccCCceEEecCchHHHHHHHHHHHHHcCCcEEEEEEecchhhH
Confidence 999999999999999999999999999999999998 4799999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcChhhHHHHHHHHHhCCCCCCCeEEEEeCC
Q 002267 198 NGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIATDW 277 (945)
Q Consensus 198 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~ 277 (945)
...+.+++.+++.|++|+..+.++ .|+..++++|+++++|+|++++.+.++..++++++++|++.++|+||.+++
T Consensus 169 ~~~~~~~~~~~~~g~~v~~~~~~~-----~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~ 243 (433)
T 4f11_A 169 EVRNDLTGVLYGEDIEISDTESFS-----NDPCTSVKKLKGNDVRIILGQFDQNMAAKVFCCAYEENMYGSKYQWIIPGW 243 (433)
T ss_dssp HHHHHHHHHSSSSSCEEEEEEEES-----SCCHHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHTTCCSTTCEEEEESC
T ss_pred HHHHHHHHHHHHcCceEEEEeccC-----cCHHHHHHHHhhCCCeEEEEeCcHHHHHHHHHHHHHcCCCCCCeEEEEcCc
Confidence 999999999999999999988876 267889999999999999999999999999999999999998899999998
Q ss_pred CccccC--------CCCCCChhHHhhhcceeEEEeecCCC--------chhhHHHHHHHhh-hcCCCCCCCCchhHHHHH
Q 002267 278 LPSVLD--------STEPVDIDTMNLLQGVVALRHHTPDT--------DLKKNFISRWKNL-KYKENSPSGFNSYALYAY 340 (945)
Q Consensus 278 ~~~~~~--------~~~~~~~~~~~~~~G~~~~~~~~~~~--------~~~~~f~~~~~~~-~~~~~~~~~~~~~~~~~Y 340 (945)
....+. ......+...+.++|++++.++.+.. +..++|.++|+++ + +..++.++.++|
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~f~~~y~~~~~-----~~~~~~~a~~~Y 318 (433)
T 4f11_A 244 YEPSWWEQVHTEANSSRCLRKNLLAAMEGYIGVDFEPLSSKQIKTISGKTPQQYEREYNNKRS-----GVGPSKFHGYAY 318 (433)
T ss_dssp SCTTTTTCC------CCSCHHHHHHHHTTCEEEEECSSCCCCCCCTTSCCHHHHHHHHHHHHT-----TSCCCTTHHHHH
T ss_pred chHhHhcccccCCCCCCCCHHHHHHHHhCEEEEEEeecCCCCCcccCCCCHHHHHHHHHHhcC-----CCCcccchhhHH
Confidence 443322 11112244567899999999876533 3478999999987 4 667889999999
Q ss_pred HHHHHHHHHHHHHHhcCCcccccCCCCCCCCCCCccccCCccccCchHHHHHHHHhcccccceeeEEEccCCCCCCCcEE
Q 002267 341 DSVWLVAHALDALLNEGGKFTFSNDPKLHDTNGSMLNLSSLRVFDGGQQFLQTLLRMNFTGLSGEIRFDADKNLVNPAYD 420 (945)
Q Consensus 341 Dav~~la~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~sG~v~fd~~g~~~~~~y~ 420 (945)
|||+++|+|++++..+..... ....+.......+.++++|.++|++++|+|++|+|+| ++|++. ..|+
T Consensus 319 DAv~~la~Al~~a~~~~~~~~----------~~~~l~~~~~~~~~~~~~l~~~l~~~~f~G~tG~v~f-~~Gd~~-~~~~ 386 (433)
T 4f11_A 319 DGIWVIAKTLQRAMETLHASS----------RHQRIQDFNYTDHTLGRIILNAMNETNFFGVTGQVVF-RNGERM-GTIK 386 (433)
T ss_dssp HHHHHHHHHHHHHHHHHHHSS----------SCCCGGGCSSCCHHHHHHHHHHHHTCEEEETTEEEEE-ETTEEE-CEEE
T ss_pred HHHHHHHHHHHHHHHHHhccC----------CCCcccccccccHHHHHHHHHHHHhcEEEccceEEEE-ecCcee-eeEE
Confidence 999999999999865421100 0000111111234468999999999999999999999 899975 8999
Q ss_pred EEEeeccceEEEEEecCCCC-cccccccccccCCCCCCCCCcceeeEeCCCccc
Q 002267 421 VLNIGGTGSRRIGYWSNYSG-LSVVAPEILYTKPPNSSSNRHLYSVIWPGEITA 473 (945)
Q Consensus 421 i~~~~~~~~~~Vg~w~~~~g-l~~~~~~~~~~~~~~~~~~~~l~~i~W~g~~~~ 473 (945)
|++++++++++||+|++... |. .+...|.|||+.++
T Consensus 387 I~~~~~g~~~~VG~~~~~~~~l~-----------------~~~~~i~W~~~~~P 423 (433)
T 4f11_A 387 FTQFQDSREVKVGEYNAVADTLE-----------------IINDTIRFQGSEPP 423 (433)
T ss_dssp EEEEETTEEEEEEEEETTTTEEE-----------------ECTTTCCCSSSSCC
T ss_pred EEEEECCceEEEEEEECCCCeEE-----------------EeCCceECCCCCCC
Confidence 99999999999999986431 11 11246899998853
No 4
>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A
Probab=100.00 E-value=1.6e-49 Score=448.78 Aligned_cols=372 Identities=20% Similarity=0.280 Sum_probs=311.2
Q ss_pred ceEEEEEEeccCCccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChH-HHHHHHHHHHhcCcEEEEccCChhH
Q 002267 49 SSVRIGALFTYDSVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGF-VGTMEALQLMENEVVAAIGPQSSGI 127 (945)
Q Consensus 49 ~~i~IG~l~~l~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~-~a~~~a~~li~~~v~aiiGp~~s~~ 127 (945)
++|+||+++|+++..|+..+.|+++|+|+||+++++|+|++|+++++|+++++. .+...++++++++|.+||||.+|..
T Consensus 3 ~~ikIG~~~~~s~~~G~~~~~a~~lAv~eiN~~ggil~g~~l~~~~~D~~~~~~~~~~~~~~~l~~~~V~aiiG~~~S~~ 82 (393)
T 3om0_A 3 SSLRMAAILDDQTVCGRGERLALALAREQINGIIEVPAKARVEVDIFELQRDSQYETTDTMCQILPKGVVSVLGPSSSPA 82 (393)
T ss_dssp CEEEEEEEECCCCSSCCCHHHHHHHHHHHHHHSCCSSCCCEEEEEEEECCSSCHHHHHHHHHHHGGGCCSCEECCSSCHH
T ss_pred cceeEEEEecCCCcccHHHHHHHHHHHHHHhcCcccccCcEEEEEEEecCCCchhHHHHHHHHHHhcCcEEEECCCCchh
Confidence 479999999999999999999999999999999999999999999999999764 5667888998889999999999955
Q ss_pred -HHHHHHhhcccCccEEecccCCCCCCC-CCCCce--EEecCChhHHHHHHHHHHHHcCCeEEEEEEEeCCcccchHHHH
Q 002267 128 -AHVISHVVNELNVPLLSFGATDPTLTS-LQYPYF--LRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDDYGRNGISVL 203 (945)
Q Consensus 128 -~~~va~~~~~~~iP~Is~~a~~~~ls~-~~~p~~--~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l 203 (945)
+.+++++++.+++|+|++++++ ++ .++|+| ||+.|++..|+.+++++++++||++|++||+|++||+...+.+
T Consensus 83 ~~~a~~~i~~~~~ip~is~~a~~---~~~~~~~~~~~fr~~p~~~~~~~~~~~~~~~~g~~~vaii~~~~~~g~~l~~~~ 159 (393)
T 3om0_A 83 SASTVSHICGEKEIPHIKVGPEE---TPRLQYLRFASVSLYPSNEDVSLAVSRILKSFNYPSASLICAKAECLLRLEELV 159 (393)
T ss_dssp HHHHHHHHHHHHTCCEEECSCCC---CC----CCSCCEESSCCHHHHHHHHHHHHHHTTSCCEEEEESSTTHHHHTHHHH
T ss_pred HHHHHHHHHhccCCCeEeccCCc---CccccccccceEEecCCHHHHHHHHHHHHHhCCCcEEEEEEeCchHHHHHHHHH
Confidence 5799999999999999998765 23 568998 9999999999999999999999999999999999998876655
Q ss_pred HHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcChhhHHHHHHHHHhCCCCCCCeEEEEeCCCccccC
Q 002267 204 GDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIATDWLPSVLD 283 (945)
Q Consensus 204 ~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~ 283 (945)
+.+.+.|++|.... ++ +..|++.++++|+++++|+|++++.+.++..++++++++||+.++|+|+.+++.....+
T Consensus 160 -~~~~~~g~~v~~~~-~~---~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a~~~g~~~~~~~~i~~~~~~~~~~ 234 (393)
T 3om0_A 160 -RGFLISKETLSVRM-LD---DSRDPTPLLKEIRDDKVSTIIIDANASISHLVLRKASELGMTSAFYKYILTTMDFPILH 234 (393)
T ss_dssp -HHHHHSSSCEEEEE-CC----CCCSHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHTTTTSTTCEEEECCTTGGGCC
T ss_pred -HhhhccCCeEEEEe-cC---CCCCHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCcccCCeEEEEecccccccc
Confidence 55778899997764 33 45789999999999999999999999999999999999999999999999987654433
Q ss_pred CCCCCChhHHhhhcceeEEEeecCCCchhhHHHHHHHhhhcCCC---CCCCCchhHHHHHHHHHHHHHHHHHHHhcCCcc
Q 002267 284 STEPVDIDTMNLLQGVVALRHHTPDTDLKKNFISRWKNLKYKEN---SPSGFNSYALYAYDSVWLVAHALDALLNEGGKF 360 (945)
Q Consensus 284 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~f~~~~~~~~~~~~---~~~~~~~~~~~~YDav~~la~Al~~~~~~~~~~ 360 (945)
.. .......|++++..+.++++.+++|.++|+++|.... ....++.+++++||||+++++|++++.+.. ..
T Consensus 235 l~-----~~~~~~~~~~g~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~p~~~a~~~YDAv~~la~Al~~~~~~~-~~ 308 (393)
T 3om0_A 235 LD-----GIVEDSSNILGFSMFNTSHPFYPEFVRSLNMSWRENCEASTYPGPALSAALMFDAVHVVVSAVRELNRSQ-EI 308 (393)
T ss_dssp CT-----TTCCSSCSEEEEECCCTTSTTHHHHHHHHHHHHTTTSCGGGCCSCCHHHHHHHHHHHHHHHHHHHHTTTS-CC
T ss_pred hh-----hhhccCCcEEEEEEecCCccHHHHHHHHHHHHhhhhccCCCCCCCchHHHHHHhHHHHHHHHHHHHhhcc-cC
Confidence 21 1223467899999888889999999999998884110 013577899999999999999999985421 11
Q ss_pred cccCCCCCCCCCCCccccCCccccCchHHHHHHHHhcccccceeeEEEccCCCCCCCcEEEEEeeccceEEEEEecCCCC
Q 002267 361 TFSNDPKLHDTNGSMLNLSSLRVFDGGQQFLQTLLRMNFTGLSGEIRFDADKNLVNPAYDVLNIGGTGSRRIGYWSNYSG 440 (945)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~sG~v~fd~~g~~~~~~y~i~~~~~~~~~~Vg~w~~~~g 440 (945)
.+....|....+|.++.+|.++|++++|+|++|+++||++|++....|+|++++++++++||+|++..|
T Consensus 309 -----------~~~~~~c~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~~VG~w~~~~g 377 (393)
T 3om0_A 309 -----------GVKPLACTSANIWPHGTSLMNYLRMVEYDGLTGRVEFNSKGQRTNYTLRILEKSRQGHREIGVWYSNRT 377 (393)
T ss_dssp -----------CCCCCCTTCCCCCTTHHHHHHHHTTCCEEETTEEECBCTTSCBCSCEEEEEEEETTEEEEEEEEECC--
T ss_pred -----------cCCCcCCCCCCcccCchHHHHHHHhCCCCCccceEEeCCCCcccceeEEEEEeccCCceEeeeEcCCCC
Confidence 222345677778888999999999999999999999999999988999999999999999999999999
Q ss_pred ccccc
Q 002267 441 LSVVA 445 (945)
Q Consensus 441 l~~~~ 445 (945)
|++..
T Consensus 378 l~~~~ 382 (393)
T 3om0_A 378 LAMNA 382 (393)
T ss_dssp -----
T ss_pred ccccc
Confidence 87653
No 5
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=100.00 E-value=5.6e-48 Score=436.17 Aligned_cols=377 Identities=19% Similarity=0.255 Sum_probs=319.8
Q ss_pred CCceEEEEEEeccCCccccchHHHHHHHHHHHhcCCCCC-CCcEEEEEEecCC-CChHHHHHHHHHHHhcCcEEEEccCC
Q 002267 47 RPSSVRIGALFTYDSVIGRAAGPAIAAAVDDVNSDPSIL-PGTTLNFVIRDTN-CSGFVGTMEALQLMENEVVAAIGPQS 124 (945)
Q Consensus 47 ~~~~i~IG~l~~l~~~~g~~~~~a~~~Ave~iN~~~~il-~g~~l~l~~~D~~-~~~~~a~~~a~~li~~~v~aiiGp~~ 124 (945)
-|++|+||++||.+. .....|+++|+|+||+++++| ++.+|.+...|++ +++..+.+.++++++++|.|||||.+
T Consensus 2 ~P~~I~IG~lf~~~~---~~~~~a~~~Av~~iN~~~~ilg~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiiG~~~ 78 (389)
T 4gpa_A 2 FPSSVQIGGLFIRNT---DQEYTAFRLAIFLHNTSPNASEAPFNLVPHVDNIETANSFAVTNAFCSQYSRGVFAIFGLYD 78 (389)
T ss_dssp CCSEEEEEEEECTTC---HHHHHHHHHHHHHHHTCSCTTTCSSEEEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred CCCeEEEEEEEcCCC---hHHHHHHHHHHHHHHhCCCCCCCCEEEEEEEecCCCchHHHHHHHHHHHHhcCCEEEEeCCc
Confidence 367999999999874 567899999999999999998 4556666665544 57889999999999999999999999
Q ss_pred hhHHHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEeCCcccchHHHHH
Q 002267 125 SGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDDYGRNGISVLG 204 (945)
Q Consensus 125 s~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~ 204 (945)
|..+.+++++++.++||+++++++.+.. .+|++++|+. +.+++++++++|||++|++||+++.++ ...+.+.
T Consensus 79 S~~~~~v~~i~~~~~ip~is~~~~~~~~--~~~~~~~~~~-----~~~a~~~l~~~~~w~~vaii~~~d~~~-~~~~~~~ 150 (389)
T 4gpa_A 79 KRSVHTLTSFCSALHISLITPSFPTEGE--SQFVLQLRPS-----LRGALLSLLDHYEWNCFVFLYDTDRGY-SILQAIM 150 (389)
T ss_dssp TTTHHHHHHHHHHTTCEEEECSCCCSSC--CSSEEECSCC-----CHHHHHHHHHHTTCCEEEEEECSTTCS-HHHHHHH
T ss_pred cHHHHHHHHHHHHhCCCceecccccccc--ccCCccccCC-----HHHHHHHHHHHcCCcEEEEEEecchhh-HHHHHHH
Confidence 9999999999999999999987665433 3466665543 346899999999999999999777665 4567788
Q ss_pred HHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcChhhHHHHHHHHHhCCCCCCCeEEEEeCCCccccCC
Q 002267 205 DALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIATDWLPSVLDS 284 (945)
Q Consensus 205 ~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~~ 284 (945)
+.+.+.|++|+....++ .+..++..++++++..++++||+.+....+..++++|+++||+.++|+|+.++++......
T Consensus 151 ~~~~~~g~~v~~~~~~~--~~~~d~~~~l~~i~~~~~~vIv~~~~~~~~~~il~~a~~~g~~~~~~~~i~~~~~~~~~~~ 228 (389)
T 4gpa_A 151 EKAGQNGWHVSAICVEN--FNDVSYRQLLEELDRRQEKKFVIDCEIERLQNILEQIVSVGKHVKGYHYIIANLGFKDISL 228 (389)
T ss_dssp HHHHTTTCEEEEEECTT--CCHHHHHHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHTCSBTTCEEEECSSBGGGSCC
T ss_pred HHHHhcCceEEEEeecC--CcchhHHHHHHHhhccCCcEEEEEechhHHHHHHHHHHHhCCCCCceEEEEeCccccchhh
Confidence 89999999999988776 6789999999999999999999999999999999999999999999999999877655433
Q ss_pred CCCCChhHHhhhcceeEEEeecCCCchhhHHHHHHHhhhcC--CCCCCCCchhHHHHHHHHHHHHHHHHHHHhcCCcccc
Q 002267 285 TEPVDIDTMNLLQGVVALRHHTPDTDLKKNFISRWKNLKYK--ENSPSGFNSYALYAYDSVWLVAHALDALLNEGGKFTF 362 (945)
Q Consensus 285 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~f~~~~~~~~~~--~~~~~~~~~~~~~~YDav~~la~Al~~~~~~~~~~~~ 362 (945)
.+......|+.++....++++.+++|.++|++.+.. ...+..++.+++++||||+++|+|++++.++..+...
T Consensus 229 -----~~~~~~~~~i~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~a~~YDAV~~~A~Al~~~~~~~~~~~~ 303 (389)
T 4gpa_A 229 -----ERFIHGGANVTGFQLVDFNTPMVTKLMDRWKKLDQREYPGSETPPKYTSALTYDGVLVMAETFRSLRRQKIDISR 303 (389)
T ss_dssp -----HHHHHHBCEEEEEECSCTTSHHHHHHHHHHTTSCTTTSTTTTSCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred -----hhhhhcccceEEEEeecCCChHHHHHHHHHHHHhhhhcccCCCChhHHHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 456677888999999999999999999999987642 1234567889999999999999999999887665321
Q ss_pred cCCCCCCCCCCCccccCCccccCchHHHHHHHHhcccccceeeEEEccCCCCCCCcEEEEEeeccceEEEEEecCCCCcc
Q 002267 363 SNDPKLHDTNGSMLNLSSLRVFDGGQQFLQTLLRMNFTGLSGEIRFDADKNLVNPAYDVLNIGGTGSRRIGYWSNYSGLS 442 (945)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~sG~v~fd~~g~~~~~~y~i~~~~~~~~~~Vg~w~~~~gl~ 442 (945)
. .....+.+....+|.+|..|+++|++++|+|++|+|+||++|+|.+..|+|+|++++++++||+|++.+||.
T Consensus 304 ~-------~~~~~~~~~~~~~~~~G~~l~~~l~~v~f~G~tG~v~Fd~~G~r~~~~~~I~~l~~~~~~~VG~W~~~~gl~ 376 (389)
T 4gpa_A 304 R-------GNAGDCLANPAAPWGQGIDMERTLKQVRIQGLTGNVQFDHYGRRVNYTMDVFELKSTGPRKVGYWNDMDKLV 376 (389)
T ss_dssp T-------TCCCCTTCSSCCCCTTHHHHHHHHHTCEEEETTEEEEBCTTSCBCSCEEEEEEEETTEEEEEEEEETTTEEE
T ss_pred c-------CCccccccCCCcccchHHHHHHHHHhCceecCceeEEECCCCCCCCCEEEEEEEECCEEEEEEEEECCCCeE
Confidence 1 123345667778899999999999999999999999999999998889999999999999999999999998
Q ss_pred cccccc
Q 002267 443 VVAPEI 448 (945)
Q Consensus 443 ~~~~~~ 448 (945)
+..++.
T Consensus 377 ~~~~~t 382 (389)
T 4gpa_A 377 LIQDRT 382 (389)
T ss_dssp ECCC--
T ss_pred ECCCCc
Confidence 876643
No 6
>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*
Probab=100.00 E-value=1.2e-48 Score=441.97 Aligned_cols=372 Identities=22% Similarity=0.335 Sum_probs=321.7
Q ss_pred CceEEEEEEeccC-CccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCC-CChHHHHHHHHHHHhcCcEEEEccCCh
Q 002267 48 PSSVRIGALFTYD-SVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTN-CSGFVGTMEALQLMENEVVAAIGPQSS 125 (945)
Q Consensus 48 ~~~i~IG~l~~l~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~-~~~~~a~~~a~~li~~~v~aiiGp~~s 125 (945)
+++|+||+++|++ +..|.....|+++|+|+||+++|+|+|++|++++.|+. .|+..+...++++++++|.+||||.+|
T Consensus 2 ~~~i~IG~l~~~sg~~~g~~~~~a~~lAv~eiN~~ggil~~~~l~~~~~~~~~~d~~~~~~~a~~l~~~~V~aiiG~~~S 81 (395)
T 3h6g_A 2 THVLRFGGIFEYVESGPMGAEELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHS 81 (395)
T ss_dssp CEEEEEEEEEEESSSCSCCHHHHHHHHHHHHHHHCSSSSSSEEEEEEEEEEETTCHHHHHHHHHHHHHHCCSCEECCSSH
T ss_pred CcceEEEEEecCCCcccchHHHHHHHHHHHHHhcCccccCCceEEEEEeecCCcChHHHHHHHHHhhhcCcEEEECCCCh
Confidence 5789999999997 46788999999999999999999998899999999887 589999999999999999999999999
Q ss_pred hHHHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEeCCcccchHHHHHH
Q 002267 126 GIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDDYGRNGISVLGD 205 (945)
Q Consensus 126 ~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~ 205 (945)
..+.+++++++.+++|+|+++++++.+++. .+|+||+.|++..++.+++++++++||++|++|| |++||....+.+.+
T Consensus 82 ~~~~a~~~~~~~~~ip~is~~~~~~~l~~~-~~~~~r~~~~~~~~~~~~~~~~~~~g~~~v~ii~-d~~~g~~~~~~~~~ 159 (395)
T 3h6g_A 82 SSANAVQSICNALGVPHIQTRWKHQVSDNK-DSFYVSLYPDFSSLSRAILDLVQFFKWKTVTVVY-DDSTGLIRLQELIK 159 (395)
T ss_dssp HHHHHHHHHHHHTTCCEEECSCCCCCTTCC-CCSEEEEEECHHHHHHHHHHHHHHTTCSEEEEEE-SSTHHHHHTHHHHT
T ss_pred hHHHHHHHHHhcCCCCeEeeccCccccccc-CceEEEecCCHHHHHHHHHHHHHHCCCeEEEEEE-EChhHHHHHHHHHH
Confidence 999999999999999999999999999864 6889999999999999999999999999999998 77899999999999
Q ss_pred HHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcChhhHHHHHHHHHhCCCCCCCeEEEEeCCCccccCCC
Q 002267 206 ALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIATDWLPSVLDST 285 (945)
Q Consensus 206 ~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~~~ 285 (945)
.+++.|++|+... ++ .+..|+..++++|+++++|+|++++...++..++++++++||+.+.|+|+.+++.....+..
T Consensus 160 ~~~~~g~~v~~~~-~~--~~~~d~~~~l~~i~~~~~~vi~~~~~~~~~~~~~~qa~~~gl~~~~~~~i~~~~~~~~~~~~ 236 (395)
T 3h6g_A 160 APSRYNLRLKIRQ-LP--ADTKDAKPLLKEMKRGKEFHVIFDCSHEMAAGILKQALAMGMMTEYYHYIFTTLDLFALDVE 236 (395)
T ss_dssp GGGTSSCEEEEEE-CC--SSGGGGHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCSTTCEEEECCTTGGGBCCT
T ss_pred hhhcCCceEEEEE-eC--CCchhHHHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHccccCCceEEEEecCceeEechH
Confidence 9999999999876 76 46789999999999999999999999999999999999999999999999886433222221
Q ss_pred CCCChhHHhhhcc--eeEEEeecCCCchhhHHHHHHHhhhcCCCC-------CCCCchhHHHHHHHHHHHHHHHHHHHhc
Q 002267 286 EPVDIDTMNLLQG--VVALRHHTPDTDLKKNFISRWKNLKYKENS-------PSGFNSYALYAYDSVWLVAHALDALLNE 356 (945)
Q Consensus 286 ~~~~~~~~~~~~G--~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~-------~~~~~~~~~~~YDav~~la~Al~~~~~~ 356 (945)
. . ...| +.++..+.++++..++|.++|++++....+ ...++.+++++|||++++++|++++.+.
T Consensus 237 ~-----~--~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~p~~~~~~~~~~~~~~aa~~YDav~~~a~Al~~a~~~ 309 (395)
T 3h6g_A 237 P-----Y--RYSGVNMTGFRILNTENTQVSSIIEKWSMERLQAPPKPDSGLLDGFMTTDAALMYDAVHVVSVAVQQFPQM 309 (395)
T ss_dssp T-----T--TTSCCEEEEEECSCTTSHHHHHHHHHHHHC------CCSSCBCTTCCCHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred H-----h--ccCccceEEEEEecCCcHHHHHHHHHHHhcccccCcccCCCcCCCccchhHHHHHhHHHHHHHHHHhhhcC
Confidence 1 1 1233 577778888899999999999986521100 1125679999999999999999985321
Q ss_pred CCcccccCCCCCCCCCCCccccCCccccCchHHHHHHHHhcccccceeeEEEcc-CCCCCCCcEEEEEeeccceEEEEEe
Q 002267 357 GGKFTFSNDPKLHDTNGSMLNLSSLRVFDGGQQFLQTLLRMNFTGLSGEIRFDA-DKNLVNPAYDVLNIGGTGSRRIGYW 435 (945)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~sG~v~fd~-~g~~~~~~y~i~~~~~~~~~~Vg~w 435 (945)
....++|.....|.++..|.++|++++|+|++|+++||+ +|++....|+|++++++++++||+|
T Consensus 310 ---------------~~~~~~c~~~~~~~~~~~l~~al~~~~~~G~tG~i~fd~~~G~~~~~~~~i~~~~~~~~~~vG~w 374 (395)
T 3h6g_A 310 ---------------TVSSLQCNRHKPWRFGTRFMSLIKEAHWEGLTGRITFNKTNGLRTDFDLDVISLKEEGLEKIGTW 374 (395)
T ss_dssp ---------------CCCCCCTTSCCCCTTHHHHHHHHHHCEEEETTEEEECCTTTSEECCCCEEEEEEETTEEEEEEEE
T ss_pred ---------------CCcCCCCCCCCcCcccHHHHHHHhcCCCcCcceeeEecCCCCeecCCeEEEEEeccCCceEEEEE
Confidence 122345677778889999999999999999999999998 9999888999999999999999999
Q ss_pred cCCCCcccccc
Q 002267 436 SNYSGLSVVAP 446 (945)
Q Consensus 436 ~~~~gl~~~~~ 446 (945)
++..|+++..+
T Consensus 375 ~~~~g~~~~~~ 385 (395)
T 3h6g_A 375 DPASGLNMTES 385 (395)
T ss_dssp ETTTEECCCC-
T ss_pred cCCCCccccCC
Confidence 99999876543
No 7
>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A
Probab=100.00 E-value=1.1e-48 Score=438.59 Aligned_cols=364 Identities=20% Similarity=0.307 Sum_probs=294.0
Q ss_pred eEEEEEEeccCCccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCC-ChHHHHHHHHHHHhcCcEEEEccCChhHH
Q 002267 50 SVRIGALFTYDSVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNC-SGFVGTMEALQLMENEVVAAIGPQSSGIA 128 (945)
Q Consensus 50 ~i~IG~l~~l~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~-~~~~a~~~a~~li~~~v~aiiGp~~s~~~ 128 (945)
+|+||+++|++. ...+.|+++|+|+||++ |++|+++++|+++ |+..+.+++++|++++|.+||||.+|..+
T Consensus 2 ~i~IG~i~~~sg---~~~~~~~~lAv~~iN~~-----g~~l~~~~~d~~~~d~~~a~~~~~~li~~~V~aiiG~~~S~~~ 73 (376)
T 3hsy_A 2 SIQIGGLFPRGA---DQEYSAFRVGMVQFSTS-----EFRLTPHIDNLEVANSFAVTNAFCSQFSRGVYAIFGFYDKKSV 73 (376)
T ss_dssp EEEEEEEEETTC---HHHHHHHHHHHHHTCCS-----SCEEEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCTTTH
T ss_pred ceeEEEEeCCCC---HHHHHHHHHHHHHHhcC-----CeEEEEEEeecCCCChHHHHHHHHHHHhcCcEEEECCCchhHH
Confidence 699999999985 36799999999999998 6899999999765 99999999999999999999999999999
Q ss_pred HHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEeCCcccchHHHHHHHHh
Q 002267 129 HVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALS 208 (945)
Q Consensus 129 ~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~ 208 (945)
.+++++++.++||+|+++++ . ...++|+||+.|+ |+.+++++++++||++|++|| |++||....+.+.++++
T Consensus 74 ~av~~~~~~~~ip~is~~~~--~--~~~~~~~~~~~p~---~~~a~~~~~~~~gw~~vaii~-d~~~g~~~~~~~~~~~~ 145 (376)
T 3hsy_A 74 NTITSFCGTLHVSFITPSFP--T--DGTHPFVIQMRPD---LKGALLSLIEYYQWDKFAYLY-DSDRGLSTLQAVLDSAA 145 (376)
T ss_dssp HHHHHHHHHHTCEEEECSCC--C--CSCCTTEEECSCC---CHHHHHHHHHHTTCCEEEEEE-CSTTCSHHHHHHHHHHH
T ss_pred HHHHHHhccCcCceeecCCC--C--cccCCceEEeCcc---HHHHHHHHHHhcCCCEEEEEE-eCchhHHHHHHHHHHhh
Confidence 99999999999999998763 2 2356899999876 899999999999999999999 89999999999999999
Q ss_pred hcCcEEEEeecCCCC--CChHHHHHHHHhhccCCceEEEEEcChhhHHHHHHHHHhCCCCCCCeEEEEeCCCccccCCCC
Q 002267 209 KKRAKISYKAPFSPG--ASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIATDWLPSVLDSTE 286 (945)
Q Consensus 209 ~~g~~v~~~~~~~~~--~~~~d~~~~l~~l~~~~~~vivl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~~~~ 286 (945)
+.|++|+....++.. .+..|+..+|++|+++++|+||+++....+..++++++++||+.++|+||.+++.....+.
T Consensus 146 ~~g~~v~~~~~~~~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~qa~~~g~~~~~~~~i~~~~~~~~~~~-- 223 (376)
T 3hsy_A 146 EKKWQVTAINVGNINNDKKDETYRSLFQDLELKKERRVILDCERDKVNDIVDQVITIGKHVKGYHYIIANLGFTDGDL-- 223 (376)
T ss_dssp HHTCEEEEEECTTCC--------------------CEEEEESCHHHHHHHHHHHHHHTSSGGGCEEEECSSBTTSTTG--
T ss_pred hcCCeEEEEEeccccccccchhHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHHcccCCCCcEEEEcCCCccccch--
Confidence 999999988766532 2468999999999999999999999999999999999999999999999999753222221
Q ss_pred CCChhHHhhhcceeEEEeecCCCchhhHHHHHHHhhhcCCC---CCCCCchhHHHHHHHHHHHHHHHHHHHhcCCccccc
Q 002267 287 PVDIDTMNLLQGVVALRHHTPDTDLKKNFISRWKNLKYKEN---SPSGFNSYALYAYDSVWLVAHALDALLNEGGKFTFS 363 (945)
Q Consensus 287 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~f~~~~~~~~~~~~---~~~~~~~~~~~~YDav~~la~Al~~~~~~~~~~~~~ 363 (945)
.+......+++++..+.|+++.+++|+++|+++|.... +...++.+++++||||+++|+|++++.+++..+..
T Consensus 224 ---~~~~~~~~~~~~~~~~~~~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~aa~~YDav~~la~Ai~~~~~~~~~~~~- 299 (376)
T 3hsy_A 224 ---LKIQFGGANVSGFQIVDYDDSLVSKFIERWSTLEEKEYPGAHTATIKYTSALTYDAVQVMTEAFRNLRKQRIEISR- 299 (376)
T ss_dssp ---GGSCCTTCEEEEEESCCTTSHHHHHHHHHHTTSCTTTSTTCSCSSCCHHHHHHHHHHHHHHHHHHHHHHTTCCCSC-
T ss_pred ---HHhhcCCcCceEEEEecCCchHHHHHHHHHHhccccccCCCCCcccchhHHHHHHHHHHHHHHHHHHHhcCCcccc-
Confidence 11122334588888888889999999999999874211 11257899999999999999999999876544321
Q ss_pred CCCCCCCCCCCcccc--CCccccCchHHHHHHHHhcccccceeeEEEccCCCCCCCcEEEEEeeccceEEEEEecCCCCc
Q 002267 364 NDPKLHDTNGSMLNL--SSLRVFDGGQQFLQTLLRMNFTGLSGEIRFDADKNLVNPAYDVLNIGGTGSRRIGYWSNYSGL 441 (945)
Q Consensus 364 ~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~f~G~sG~v~fd~~g~~~~~~y~i~~~~~~~~~~Vg~w~~~~gl 441 (945)
.+....| ....+|.+|.+|+++|++++|+|++|+|+||++|++....|+|+++.++++++||+|++.+||
T Consensus 300 --------~~~~~~~~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~~VG~w~~~~g~ 371 (376)
T 3hsy_A 300 --------RGNAGDCLANPAVPWGQGVEIERALKQVQVEGLSGNIKFDQNGKRINYTINIMELKTNGPRKIGYWSEVDKM 371 (376)
T ss_dssp --------CCCCCCTTCSSCCCCHHHHHHHHHHHHCCEEETTEEECBCTTSBBCSCEEEEEEEETTEEEEEEEEETTTEE
T ss_pred --------CCCCCccCCCCCCCcCCcHHHHHHHHhcCcCCCccceeECCCCCCccceEEEEEecCCCceEEEEEcCCCCc
Confidence 1112234 445667889999999999999999999999999999899999999999999999999999987
Q ss_pred cc
Q 002267 442 SV 443 (945)
Q Consensus 442 ~~ 443 (945)
+.
T Consensus 372 ~~ 373 (376)
T 3hsy_A 372 VV 373 (376)
T ss_dssp EE
T ss_pred ee
Confidence 64
No 8
>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}
Probab=100.00 E-value=6.3e-48 Score=433.84 Aligned_cols=369 Identities=18% Similarity=0.262 Sum_probs=315.9
Q ss_pred CCCceEEEEEEeccCCccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCC-ChHHHHHHHHHHHhcCcEEEEccCC
Q 002267 46 SRPSSVRIGALFTYDSVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNC-SGFVGTMEALQLMENEVVAAIGPQS 124 (945)
Q Consensus 46 ~~~~~i~IG~l~~l~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~-~~~~a~~~a~~li~~~v~aiiGp~~ 124 (945)
..+++|+||+++|++.. ....|+++|+|+||+++ +|+++++|+++ ++..+.+++++|++++|.+||||.+
T Consensus 6 ~~~~~ikIG~~~~~sg~---~~~~a~~lAv~~iN~~g------~l~~~~~D~~~~d~~~a~~~~~~l~~~~V~aiiG~~~ 76 (384)
T 3saj_A 6 AMPNNIQIGGLFPNQQS---QEHAAFRFALSQLTEPP------KLLPQIDIVNISDSFEMTYRFCSQFSKGVYAIFGFYE 76 (384)
T ss_dssp CCCSEEEEEEEESCSSS---HHHHHHHHHHTTCCSSS------EEEEEEEECCTTCHHHHHHHHHHHHHTTCSCEEECCC
T ss_pred CCCcceeEEEEecCCCH---HHHHHHHHHHHHHhcCC------ccceeeEecccCchhhHHHHHHHHHhcCeEEEECCCC
Confidence 35689999999999865 78999999999999874 99999999987 9999999999999999999999999
Q ss_pred hhHHHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEeCCcccchHHHHH
Q 002267 125 SGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDDYGRNGISVLG 204 (945)
Q Consensus 125 s~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~ 204 (945)
|..+.+++++++.++||+|+++ ++.++ ..+|+||+.|+ ++.+++++++++||++|++|| |++||....+.+.
T Consensus 77 S~~~~a~~~~~~~~~iP~is~~--~~~~~--~~~~~~~~~p~---~~~a~~~~~~~~g~~~v~ii~-d~~~g~~~~~~~~ 148 (384)
T 3saj_A 77 RRTVNMLTSFCGALHVCFITPS--FPVDT--SNQFVLQLRPE---LQEALISIIDHYKWQTFVYIY-DADRGLSVLQRVL 148 (384)
T ss_dssp HHHHHHHHHHHHHHTCCEEECS--CCCSS--CCTTEEECSCC---CHHHHHHHHHHTTCCEEEEEE-CSTTCSHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCeEecc--ccCcC--ccCceEEeccc---HHHHHHHHHHHCCCcEEEEEE-eCchhHHHHHHHH
Confidence 9999999999999999999984 45443 45778888877 899999999999999999999 7799999999999
Q ss_pred HHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcChhhHHHHHHHHHhCCCCCCCeEEEEeCCCccccCC
Q 002267 205 DALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIATDWLPSVLDS 284 (945)
Q Consensus 205 ~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~~ 284 (945)
+++++.|++|+..+.++ .+..|+..++.+|+++++|+|++++.+.++..++++++++||+.++|+|+.+++.....+.
T Consensus 149 ~~~~~~g~~v~~~~~~~--~~~~d~~~~l~~ik~~~~~vii~~~~~~~~~~~~~qa~~~g~~~~~~~~i~~~~~~~~~~~ 226 (384)
T 3saj_A 149 DTAAEKNWQVTAVNILT--TTEEGYRMLFQDLEKKKERLVVVDCESERLNAILGQIVKLEKNGIGYHYILANLGFMDIDL 226 (384)
T ss_dssp HHHHHHTCEEEEEEGGG--CCHHHHHHTTTTCCSCSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEEESSSCGGGSCH
T ss_pred HHhhhcCceEEEEEecc--CCchhHHHHHHHHhccCCcEEEEEcCHHHHHHHHHHHHHcCCCCCCcEEEEECCCcccccH
Confidence 99999999999988655 5788999999999999999999999999999999999999999999999999854322221
Q ss_pred CCCCChhHHhhhcceeEEEeecCCCchhhHHHHHHHhhhcCC---CCCCCCchhHHHHHHHHHHHHHHHHHHHhcCCccc
Q 002267 285 TEPVDIDTMNLLQGVVALRHHTPDTDLKKNFISRWKNLKYKE---NSPSGFNSYALYAYDSVWLVAHALDALLNEGGKFT 361 (945)
Q Consensus 285 ~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~f~~~~~~~~~~~---~~~~~~~~~~~~~YDav~~la~Al~~~~~~~~~~~ 361 (945)
........|++++.++.++++..++|.++|++++... .....++.+++++||||+++++|++++.+.++++.
T Consensus 227 -----~~~~~~~~~v~~~~~~~~~~~~~~~F~~~~~~~~~~~~p~~~~~~~~~~aa~~YDav~~~a~Al~~~~~~~~~~~ 301 (384)
T 3saj_A 227 -----NKFKESGANVTGFQLVNYTDTIPARIMQQWRTSDSRDHTRVDWKRPKYTSALTYDGVKVMAEAFQSLRRQRIDIS 301 (384)
T ss_dssp -----HHHHHTTCCEEEEECCCTTSHHHHHHHHHHHHHHHHC------CCCCHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred -----HHhhCCCcceEEEEeecCCChHHHHHHHHHHhcCccccCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhcccee
Confidence 2344556779999999999999999999999987421 11224578899999999999999999987655442
Q ss_pred ccCCCCCCCCCCCccccCCc--cccCchHHHHHHHHhcccccceeeEEEccCCCCCCCcEEEEEeeccceEEEEEecCCC
Q 002267 362 FSNDPKLHDTNGSMLNLSSL--RVFDGGQQFLQTLLRMNFTGLSGEIRFDADKNLVNPAYDVLNIGGTGSRRIGYWSNYS 439 (945)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~f~G~sG~v~fd~~g~~~~~~y~i~~~~~~~~~~Vg~w~~~~ 439 (945)
++ +....|... .+|.++..|+++|++++|+|++|+++||+||++....|+|++++++++++||+|++..
T Consensus 302 ~~---------~~~~~c~~~~~~~~~~g~~l~~~l~~~~f~G~tG~i~fd~~G~~~~~~~~i~~~~~~g~~~VG~W~~~~ 372 (384)
T 3saj_A 302 RR---------GNAGDCLANPAVPWGQGIDIQRALQQVRFEGLTGNVQFNEKGRRTNYTLHVIEMKHDGIRKIGYWNEDD 372 (384)
T ss_dssp CC---------CSCCCSCCBSCCCCTTHHHHHHHHHSCCEEETTEEECBCTTSBBCSCCEEEEEEETTEEEEEEEEETTT
T ss_pred cC---------CCCCCCCCCCCCCcCCcHHHHHHHHhCcCcccceeeEeCCCCCcccceEEEEEeccCCcceeEEEcCCC
Confidence 21 112234433 4577899999999999999999999999999999999999999999999999999999
Q ss_pred Cccccccc
Q 002267 440 GLSVVAPE 447 (945)
Q Consensus 440 gl~~~~~~ 447 (945)
||++.+++
T Consensus 373 gl~~~~~~ 380 (384)
T 3saj_A 373 KFVPAALE 380 (384)
T ss_dssp EEEECCC-
T ss_pred CccccCcc
Confidence 98877654
No 9
>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*
Probab=100.00 E-value=1.5e-47 Score=439.57 Aligned_cols=365 Identities=18% Similarity=0.273 Sum_probs=302.9
Q ss_pred CCceEEEEEEeccCC---ccccchHHHHHHHHHHHhcCCC----CCCCcEEEEEEecCCCChHHHHHHHHHHH----hcC
Q 002267 47 RPSSVRIGALFTYDS---VIGRAAGPAIAAAVDDVNSDPS----ILPGTTLNFVIRDTNCSGFVGTMEALQLM----ENE 115 (945)
Q Consensus 47 ~~~~i~IG~l~~l~~---~~g~~~~~a~~~Ave~iN~~~~----il~g~~l~l~~~D~~~~~~~a~~~a~~li----~~~ 115 (945)
.+++|+||+++|++. ..|.....|+++|+|+||++++ +|+|++|+++++|++|++. |+..+.+++ +++
T Consensus 6 ~~~~i~IG~~~p~sg~~~~~g~~~~~a~~~Av~eiN~~~~~~~~ll~g~~l~~~~~D~~~~~~-a~~~~~~~~~~~~~~~ 84 (441)
T 1jdp_A 6 PPQKIEVLVLLPQDDSYLFSLTRVRPAIEYALRSVEGNGTGRRLLPPGTRFQVAYEDSDCGNR-ALFSLVDRVAAARGAK 84 (441)
T ss_dssp CCCEEEEEEEECSSTTSTTCHHHHHHHHHHHHHHHCC-----CCSCTTCEEEEEEEECTTSTH-HHHHHHHHHHHTTTCC
T ss_pred CCCceEEEEEcCCCCCcccchhhhHHHHHHHHHHHHhCCCcccccCCCcEEEEEEecCCCchh-HHHHHHHHHHhhccCC
Confidence 456899999999983 3456778999999999999998 8899999999999999998 776666554 238
Q ss_pred cEEEEccCChhHHHHHHHhhcccCccEEecccCCCCCCCC--CCCceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEeC
Q 002267 116 VVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSL--QYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDD 193 (945)
Q Consensus 116 v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~~--~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~ 193 (945)
|.+||||.+|..+.+++++++.+++|+|+++++++.++++ +||||||+.|++..++.++++++++|||++|++||+|+
T Consensus 85 v~aiiG~~~S~~~~~v~~~~~~~~ip~is~~~~~~~ls~~~~~~~~~fr~~p~~~~~~~a~~~~~~~~~w~~v~ii~~d~ 164 (441)
T 1jdp_A 85 PDLILGPVCEYAAAPVARLASHWDLPMLSAGALAAGFQHKDSEYSHLTRVAPAYAKMGEMMLALFRHHHWSRAALVYSDD 164 (441)
T ss_dssp CSEEECCCSHHHHHHHHHHHHHHTCCEEESCCCSGGGGCTTTTTTTEEECSCCHHHHHHHHHHHHHHHTCCEEEEEEECC
T ss_pred ceEEECCCchhhHHHHHHHHhhcCCcEEcCCCCchhhccccccCCceEEecCcHHHHHHHHHHHHHhcCCcEEEEEEEcC
Confidence 9999999999999999999999999999999999999984 79999999999999999999999999999999999999
Q ss_pred Ccccc---hHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcChhhHHHHHHHHHhCCCCCCCe
Q 002267 194 DYGRN---GISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSY 270 (945)
Q Consensus 194 ~~g~~---~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~~~~~~~~~~a~~~g~~~~~~ 270 (945)
+||+. ..+.+++++++.|+||++...++ .+..++..++++|+ +++|||++++...++..++++++++|+..+.|
T Consensus 165 ~~g~~~~~~~~~~~~~~~~~g~~v~~~~~~~--~~~~d~~~~l~~i~-~~~~vii~~~~~~~~~~~~~~~~~~gl~~~~~ 241 (441)
T 1jdp_A 165 KLERNCYFTLEGVHEVFQEEGLHTSIYSFDE--TKDLDLEDIVRNIQ-ASERVVIMCASSDTIRSIMLVAHRHGMTSGDY 241 (441)
T ss_dssp SSSCHHHHHHHHHHHHHHHHTCEEEEEEECT--TSCCCHHHHHHHHH-HHCSEEEEESCHHHHHHHHHHHHHTTCTTTTC
T ss_pred CcccchHHHHHHHHHHHHhcCcEEEEEEecC--CcccCHHHHHHHhh-cCCcEEEEecCHHHHHHHHHHHHHcCCCCCCE
Confidence 99999 99999999999999999887776 34557899999999 99999999999999999999999999998889
Q ss_pred EEEEeCCCcc------ccCCCCCCChhHHhhhcceeEEEeecCCCchhhHHHHHHHhhhcCC--CCCCCCchhHHHHHHH
Q 002267 271 VWIATDWLPS------VLDSTEPVDIDTMNLLQGVVALRHHTPDTDLKKNFISRWKNLKYKE--NSPSGFNSYALYAYDS 342 (945)
Q Consensus 271 ~wi~~~~~~~------~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~f~~~~~~~~~~~--~~~~~~~~~~~~~YDa 342 (945)
+||.+++... .++..............++.++..+.++.+.+++|.++|++++... +....++.+++++|||
T Consensus 242 v~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~g~~~~~~~~p~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~YdA 321 (441)
T 1jdp_A 242 AFFNIELFNSSSYGDGSWKRGDKHDFEAKQAYSSLQTVTLLRTVKPEFEKFSMEVKSSVEKQGLNMEDYVNMFVEGFHDA 321 (441)
T ss_dssp EEEEECSSCCCSTTTCTTCCSSTTHHHHHHHGGGEEEEEECCCCCHHHHHHHHHHHHHHHTTTCCCCSSCCHHHHHHHHH
T ss_pred EEEEEeccccccccCCCCccCCcccHHHHHHHHhheEEeecCCCCchHHHHHHHHHHHHhhCCCCccchhhhHHHHHHHH
Confidence 9999984322 1111111111112345667777777788899999999998873110 1112356789999999
Q ss_pred HHHHHHHHHHHHhcCCcccccCCCCCCCCCCCccccCCccccCchHHHHHHHHhcccccceeeEEEccCCCCCCCcEEEE
Q 002267 343 VWLVAHALDALLNEGGKFTFSNDPKLHDTNGSMLNLSSLRVFDGGQQFLQTLLRMNFTGLSGEIRFDADKNLVNPAYDVL 422 (945)
Q Consensus 343 v~~la~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~sG~v~fd~~g~~~~~~y~i~ 422 (945)
|+++|+|++++..++.. +.++++|.++|++++|+|++|+++||++|++. ..|+|+
T Consensus 322 v~~~A~Al~~~~~~~~~------------------------~~~~~~l~~~l~~~~f~g~~G~v~fd~~Gd~~-~~~~I~ 376 (441)
T 1jdp_A 322 ILLYVLALHEVLRAGYS------------------------KKDGGKIIQQTWNRTFEGIAGQVSIDANGDRY-GDFSVI 376 (441)
T ss_dssp HHHHHHHHHHHHHTTCC------------------------TTCHHHHHHHHSSEEEEETTEEEEECTTSBBC-CEEEEE
T ss_pred HHHHHHHHHHHHHhCCC------------------------CCCHHHHHHHHhCCeeECCccceEECCCCCcc-ccEEEE
Confidence 99999999998654211 12588999999999999999999999999965 889999
Q ss_pred Eee---ccceEEEEEecCCCC
Q 002267 423 NIG---GTGSRRIGYWSNYSG 440 (945)
Q Consensus 423 ~~~---~~~~~~Vg~w~~~~g 440 (945)
+++ ++.+++||.|++..+
T Consensus 377 ~~~~~~~g~~~~VG~~~~~~~ 397 (441)
T 1jdp_A 377 AMTDVEAGTQEVIGDYFGKEG 397 (441)
T ss_dssp EEEETTTTEEEEEEEEETTTT
T ss_pred ecccCCCCceEEEEEEcCCCC
Confidence 996 346899999998764
No 10
>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*
Probab=100.00 E-value=1.3e-47 Score=439.61 Aligned_cols=362 Identities=19% Similarity=0.242 Sum_probs=307.5
Q ss_pred ceEEEEEEeccC---CccccchHH-HHHHHHHHHhcCCCCCCCcEEEEEEecC-----CCChHHHHHHHHHHHh-cCcEE
Q 002267 49 SSVRIGALFTYD---SVIGRAAGP-AIAAAVDDVNSDPSILPGTTLNFVIRDT-----NCSGFVGTMEALQLME-NEVVA 118 (945)
Q Consensus 49 ~~i~IG~l~~l~---~~~g~~~~~-a~~~Ave~iN~~~~il~g~~l~l~~~D~-----~~~~~~a~~~a~~li~-~~v~a 118 (945)
++|+||+++|++ +..|..... |+++|+|+||+++++|+|++|+++++|+ +|++..++..+.+++. ++|.+
T Consensus 1 g~i~IG~l~p~sg~~~~~g~~~~~~a~~~Av~~iN~~ggil~g~~l~~~~~D~~~~p~~c~~~~a~~~a~~~l~~~~v~a 80 (435)
T 1dp4_A 1 SDLTVAVVLPLTNTSYPWSWARVGPAVELALARVKARPDLLPGWTVRMVLGSSENAAGVCSDTAAPLAAVDLKWEHSPAV 80 (435)
T ss_dssp CEEEEEEEECSSCCCSTTCHHHHHHHHHHHHHHHHTCTTSSTTCEEEEEEEECBCTTSSBCTTHHHHHHHHHHHHHCCSE
T ss_pred CceEEEEEccCcCCCCceeHHHHHHHHHHHHHHHHhCCCCCCCceEEEEEecCcCcccccchhhHHHHHHHHHHhcCceE
Confidence 479999999998 356667777 9999999999999999999999999999 5666788888888875 49999
Q ss_pred EEccCChhHHHHHHHhhcccCccEEecccCCCCCCCC-CCCceEEecCChhHHHHHHHHHHHHcCCeEEEEE------EE
Q 002267 119 AIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSL-QYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAI------FV 191 (945)
Q Consensus 119 iiGp~~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~~-~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii------~~ 191 (945)
||||.+|..+.+++++++.+++|+|+++++++.++++ +||||||+.|++..++.++++++++|||++|++| ++
T Consensus 81 viG~~~S~~~~av~~~~~~~~ip~is~~~~~~~ls~~~~~~~~fr~~p~~~~~~~a~~~~l~~~~w~~v~ii~~~d~~~~ 160 (435)
T 1dp4_A 81 FLGPGCVYSAAPVGRFTAHWRVPLLTAGAPALGIGVKDEYALTTRTGPSHVKLGDFVTALHRRLGWEHQALVLYADRLGD 160 (435)
T ss_dssp EECCCSHHHHHHHHHHHHHHTCCEEESCCCCGGGGCTTTSTTEEECSCCHHHHHHHHHHHHHHHTCCSEEEEEEECCSSS
T ss_pred EECCCChHHHHHHHHHHHhcCCcEEcccccccccCcccccCeEEEecCcHHHHHHHHHHHHHHCCCcEEEEEEEccCCCC
Confidence 9999999999999999999999999999999999984 5999999999999999999999999999999999 67
Q ss_pred eCCcccchHHHHHHHHhh-cCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcChhhHHHHHHHHHhCCCCCCCe
Q 002267 192 DDDYGRNGISVLGDALSK-KRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSY 270 (945)
Q Consensus 192 d~~~g~~~~~~l~~~l~~-~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~~~~~~~~~~a~~~g~~~~~~ 270 (945)
|++|| ..++.+.+++.+ .|+||+....++ .+..|+..++++|++ ++||||+++.+.++..++++++++|+..++|
T Consensus 161 ~~~~g-~~~~~~~~~~~~~~g~~v~~~~~~~--~~~~d~~~~l~~i~~-~~~viv~~~~~~~~~~~~~~a~~~g~~~~~~ 236 (435)
T 1dp4_A 161 DRPCF-FIVEGLYMRVRERLNITVNHQEFVE--GDPDHYPKLLRAVRR-KGRVIYICSSPDAFRNLMLLALNAGLTGEDY 236 (435)
T ss_dssp CCHHH-HHHHHHHHHHHHHHCCEEEEEEECT--TCGGGHHHHHHHHHH-HCSEEEEESCHHHHHHHHHHHHHTTCCTTTC
T ss_pred cchHH-HHHHHHHHHHHhhcCeEEEEEEEec--CchhhHHHHHHHHHh-hCceEEEecChHHHHHHHHHHHHcCCCCCCE
Confidence 77788 566778888888 999999887765 467889999999998 9999999999999999999999999988789
Q ss_pred EEEEeCCCccccC---------CC---CCCChhHHhhhcceeEEEeecCCCchhhHHHHHHHhhhcC----CCCCCCCch
Q 002267 271 VWIATDWLPSVLD---------ST---EPVDIDTMNLLQGVVALRHHTPDTDLKKNFISRWKNLKYK----ENSPSGFNS 334 (945)
Q Consensus 271 ~wi~~~~~~~~~~---------~~---~~~~~~~~~~~~G~~~~~~~~~~~~~~~~f~~~~~~~~~~----~~~~~~~~~ 334 (945)
+||.++++..... .. ....+...+.++|++++.++.|+++..++|.++|++++.. ......++.
T Consensus 237 ~~i~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 316 (435)
T 1dp4_A 237 VFFHLDVFGQSLKSAQGLVPQKPWERGDGQDRSARQAFQAAKIITYKEPDNPEYLEFLKQLKLLADKKFNFTVEDGLKNI 316 (435)
T ss_dssp EEEEECTTCTTSCSSCTTSCBCTTCCSSSCHHHHHHHGGGEEEEEECCCCSHHHHHHHHHHHHHHHHHHCCCCCCSGGGH
T ss_pred EEEEEecccccccccccccccCCcccCCcchHHHHHHhheeEEEecCCCCChhHHHHHHHHHHHhcCCCCcccccchhhH
Confidence 9999987654321 00 0001344567899999888888888999999999877621 011123677
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCCCCCCCccccCCccccCchHHHHHHHHhcccccceeeEEEccCCCC
Q 002267 335 YALYAYDSVWLVAHALDALLNEGGKFTFSNDPKLHDTNGSMLNLSSLRVFDGGQQFLQTLLRMNFTGLSGEIRFDADKNL 414 (945)
Q Consensus 335 ~~~~~YDav~~la~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~sG~v~fd~~g~~ 414 (945)
++.++||||+++|+||+++..+++. +.++++|.++|++++|+|++|+++||++|++
T Consensus 317 ~~~~~ydav~~~a~Al~~~~~~~~~------------------------~~~~~~l~~~l~~~~f~g~~G~v~fd~~g~~ 372 (435)
T 1dp4_A 317 IPASFHDGLLLYVQAVTETLAQGGT------------------------VTDGENITQRMWNRSFQGVTGYLKIDRNGDR 372 (435)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCC------------------------TTCHHHHHHTTTTEEEEETTEEEEECTTSBB
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCC------------------------CCCHHHHHHHHhCceeeccceeEEECCCCCc
Confidence 8999999999999999998764321 1158899999999999999999999999997
Q ss_pred CCCcEEEEEe--eccceEEEEEecCCC
Q 002267 415 VNPAYDVLNI--GGTGSRRIGYWSNYS 439 (945)
Q Consensus 415 ~~~~y~i~~~--~~~~~~~Vg~w~~~~ 439 (945)
. ..|+|+++ .++.++.||.|++..
T Consensus 373 ~-~~~~i~~~~~~~g~~~~vg~~~~~~ 398 (435)
T 1dp4_A 373 D-TDFSLWDMDPETGAFRVVLNYNGTS 398 (435)
T ss_dssp C-CCEEEEEECTTTCCEEEEEEECTTT
T ss_pred c-ceeEEEEecCCCCcEEEEEEecCCC
Confidence 6 79999999 456799999998765
No 11
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=100.00 E-value=6.6e-47 Score=445.44 Aligned_cols=392 Identities=21% Similarity=0.378 Sum_probs=320.9
Q ss_pred CCCceEEEEEEeccCC-------------ccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHH
Q 002267 46 SRPSSVRIGALFTYDS-------------VIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLM 112 (945)
Q Consensus 46 ~~~~~i~IG~l~~l~~-------------~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li 112 (945)
..+++|+||+++|++. ..|.....|+++|+|+||+++++|||++|+++++|+++++..|++.+.+++
T Consensus 10 ~~~g~i~IG~l~pl~g~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~llpg~~L~~~i~D~~~~~~~a~~~a~~~l 89 (555)
T 2e4u_A 10 KIEGDLVLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEINKDNYLLPGVKLGVHILDTCSRDTYALEQSLEFV 89 (555)
T ss_dssp EECCSEEEEEEECCEEECCTTCSEEEECTTTTHHHHHHHHHHHHHHHHCTTSSTTCCEEEEEEECTTCHHHHHHHHHHHH
T ss_pred ecCCCEEEEEEEEeeECCCCCCccccccchhhhHHHHHHHHHHHHHhCCCCCCCCCeEEEEEEECCCChHHHHHHHHHHH
Confidence 3567999999999973 346678899999999999999999999999999999999999999998887
Q ss_pred h-------------------------cCcEEEEccCChhHHHHHHHhhcccCccEEecccCCCCCCC-CCCCceEEecCC
Q 002267 113 E-------------------------NEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTS-LQYPYFLRTTQS 166 (945)
Q Consensus 113 ~-------------------------~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~-~~~p~~~r~~p~ 166 (945)
+ ++|.+||||.+|..+.+++++++.+++|+|+++++++.|++ .+||||||+.|+
T Consensus 90 ~~~~~~~~~~ny~C~~~~~~~~~~~~~~v~aviG~~~S~~s~~va~~~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~p~ 169 (555)
T 2e4u_A 90 RASLTKVDEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPP 169 (555)
T ss_dssp HTTC--------------------CCCCEEEEEECSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTCTTEEESSCC
T ss_pred hCcCcccCCCCcccCCCccccccccCCceEEEECCCCcHHHHHHHHHHhCcCCceEeCCcCCCccCCcccCCCceeeCCC
Confidence 3 47999999999999999999999999999999999999998 479999999999
Q ss_pred hhHHHHHHHHHHHHcCCeEEEEEEEeCCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhc-cCCceEEE
Q 002267 167 DYYQMHAVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGAN-LMESRVFV 245 (945)
Q Consensus 167 d~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~-~~~~~viv 245 (945)
|..++.++++++++|||++|++|++|++||+...+.+++++++.|+||++.+.++...+..++..++.+|+ ++++||||
T Consensus 170 d~~~~~a~~~ll~~fgw~~V~ii~~d~~~g~~~~~~~~~~~~~~gi~v~~~~~~~~~~~~~~~~~~l~~i~~~s~a~vIi 249 (555)
T 2e4u_A 170 DFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNICIATAEKVGRSNIRKSYDSVIRELLQKPNARVVV 249 (555)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEEESSTTHHHHHHHHHHHHHTTTCEEEEEEEECTTCCHHHHHHHHHHHHTCTTCCEEE
T ss_pred hHHHHHHHHHHHHHcCCeEEEEEEeeChHHHHHHHHHHHHHHHCCccEEEEEEeCCCCChHHHHHHHHHHhccCCCCEEE
Confidence 99999999999999999999999999999999999999999999999999888875446889999999996 47999999
Q ss_pred EEcChhhHHHHHHHHHhCCCCCCCeEEEEeCCCccccCCCCCCChhHHhhhcceeEEEeecCCCchhh------------
Q 002267 246 VHVNPDTGLTIFSVAKSLGMTAGSYVWIATDWLPSVLDSTEPVDIDTMNLLQGVVALRHHTPDTDLKK------------ 313 (945)
Q Consensus 246 l~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~------------ 313 (945)
+++...++..++++++++|+ +++||+++.|........ ...+.++|++++.++..+.+.++
T Consensus 250 ~~~~~~~~~~~~~~~~~~g~---~~~~i~s~~~~~~~~~~~----~~~~~~~G~l~~~~~~~~ipgf~~f~~~~~p~~~p 322 (555)
T 2e4u_A 250 LFMRSDDSRELIAAANRVNA---SFTWVASDGWGAQESIVK----GSEHVAYGAITLELASHPVRQFDRYFQSLNPYNNH 322 (555)
T ss_dssp EECCHHHHHHHHHHHHHTTC---CCEEEECTTTTTCGGGTT----TCHHHHTTCEEEEECCCCCHHHHHHHHTCCTTTCT
T ss_pred EEcCHHHHHHHHHHHHHhcC---CeEEEEeccccccchhhc----cchhhcceEEEEEeccCCCCcHHHHHhhCCcccCC
Confidence 99999999999999999997 689999987765322211 12356899999988755544443
Q ss_pred ---HHHHHHHhhhcCCCC-------------C-----CCCchhHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCCCCC
Q 002267 314 ---NFISRWKNLKYKENS-------------P-----SGFNSYALYAYDSVWLVAHALDALLNEGGKFTFSNDPKLHDTN 372 (945)
Q Consensus 314 ---~f~~~~~~~~~~~~~-------------~-----~~~~~~~~~~YDav~~la~Al~~~~~~~~~~~~~~~~~~~~~~ 372 (945)
.|.+.|++.|..... . ..+..+++.+||||+++|+||+++..+....
T Consensus 323 ~~~~~~~~w~~~f~c~~~~~~~~~~~C~~~e~l~~~~~~~~~~~~~~YdAVya~A~AL~~~~~~~~~~------------ 390 (555)
T 2e4u_A 323 RNPWFRDFWEQKFQCSLQNKRNHRQVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCPQ------------ 390 (555)
T ss_dssp TCTTHHHHHHHHTTCCCC------CCCCTTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHCTT------------
T ss_pred CCHHHHHHHHHHcCCCCCCCCccCCCCCCccccccccccccccchhhHHHHHHHHHHHHHHHhhhcCC------------
Confidence 355567776631100 0 1145678999999999999999986531110
Q ss_pred CCccccCCccccCchHHHHH-HHHhcccc------cceee-EEEccCCCCCCCcEEEEEee--cc--ceEEEEEecCCCC
Q 002267 373 GSMLNLSSLRVFDGGQQFLQ-TLLRMNFT------GLSGE-IRFDADKNLVNPAYDVLNIG--GT--GSRRIGYWSNYSG 440 (945)
Q Consensus 373 ~~~~~~~~~~~~~~~~~l~~-~l~~~~f~------G~sG~-v~fd~~g~~~~~~y~i~~~~--~~--~~~~Vg~w~~~~g 440 (945)
....|...... ++++|++ +|++++|+ |++|+ +.||++|++. ..|+|+|++ ++ .+++||.|++ .
T Consensus 391 -~~~~~~~~~~~-~~~~l~~~~L~~v~f~~~~~~~g~~G~~v~fd~~Gd~~-~~y~I~~~~~~~g~~~~~~VG~~~~--~ 465 (555)
T 2e4u_A 391 -TTKLCDAMKIL-DGKKLYKEYLLKIQFTAPFNPNKGADSIVKFDTFGDGM-GRYNVFNLQQTGGKYSYLKVGHWAE--T 465 (555)
T ss_dssp -CSSCCGGGTSC-CHHHHHHHHTTCEEECCSSSCCSSSCCEEECCTTSCCC-CCEEEEEEECTTSSCEEEEEEEESS--S
T ss_pred -CCccccccCCC-CcccccHHhHhceeecccccccCCCCCeEEEcCCCCcc-ceEEEEEEEecCCcEEEEEEEEecc--e
Confidence 00112222222 5889999 99999999 99997 9999999964 889999996 23 4889999984 2
Q ss_pred cccccccccccCCCCCCCCCcceeeEeCCCcccCCcceec
Q 002267 441 LSVVAPEILYTKPPNSSSNRHLYSVIWPGEITATPRGWVF 480 (945)
Q Consensus 441 l~~~~~~~~~~~~~~~~~~~~l~~i~W~g~~~~~P~~~~~ 480 (945)
|. .+...|.|++ .++|+++|-
T Consensus 466 l~-----------------i~~~~I~W~~--~~~P~S~CS 486 (555)
T 2e4u_A 466 LS-----------------LDVDSIHWSR--NSVPTSQCS 486 (555)
T ss_dssp EE-----------------CCGGGCCCTT--SSCCCCCSS
T ss_pred EE-----------------EeccccccCC--CCCcceeeC
Confidence 32 1235689987 688999983
No 12
>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}
Probab=100.00 E-value=1e-46 Score=433.93 Aligned_cols=369 Identities=20% Similarity=0.383 Sum_probs=306.5
Q ss_pred CCCceEEEEEEeccC------------C-ccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHH
Q 002267 46 SRPSSVRIGALFTYD------------S-VIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLM 112 (945)
Q Consensus 46 ~~~~~i~IG~l~~l~------------~-~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li 112 (945)
..+++|.||++||++ . ..|.....|+++|+||||+++++|||++|+++++|+++++..|++.+.+|+
T Consensus 9 ~~~GDi~iGglf~l~~~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~lLpg~~L~~~i~D~~~~~~~a~~~~~~ll 88 (479)
T 3sm9_A 9 KIEGDLVLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEINKDDYLLPGVKLGVHILDTCSRDTYALEQSLEFV 88 (479)
T ss_dssp EECCSEEEEEEECCEEECC-CCSEEEECTTTTHHHHHHHHHHHHHHHHCSSSSTTCCEEEEEEECTTCHHHHHHHHHHHH
T ss_pred ccCCCEEEEEEEEeEECCCCCCCCcccchhhhHHHHHHHHHHHHHHhCCCccCCCCeEeEEEEecCCChHHHHHHHHHHH
Confidence 367899999999996 1 156778999999999999999999999999999999999999999999998
Q ss_pred hc-------------------------CcEEEEccCChhHHHHHHHhhcccCccEEecccCCCCCCCC-CCCceEEecCC
Q 002267 113 EN-------------------------EVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSL-QYPYFLRTTQS 166 (945)
Q Consensus 113 ~~-------------------------~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~~-~~p~~~r~~p~ 166 (945)
++ +|.|||||.+|..+.+++++++.+++|+|++++++|.|+++ +||||||+.|+
T Consensus 89 ~~~~~~~~~pny~C~~~~~~~~~~~~~~v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~ps 168 (479)
T 3sm9_A 89 RASLTKVDEAEYMCPDGSYAIQENIPLLIAGVIGGSYSSVSIQVANLLRLFQIPQISYASTSAKLSDKSRYDYFARTVPP 168 (479)
T ss_dssp HTCC-----------------------CEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTTTTEEESSCC
T ss_pred hCCCccCCCCCCccCCCCccccccCCCceEEEECCCCcHHHHHHHHHHhcCCccEECCCcCCccccCcccCCCeEEeCCc
Confidence 74 59999999999999999999999999999999999999994 69999999999
Q ss_pred hhHHHHHHHHHHHHcCCeEEEEEEEeCCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHH-HhhccCCceEEE
Q 002267 167 DYYQMHAVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLL-VGANLMESRVFV 245 (945)
Q Consensus 167 d~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l-~~l~~~~~~viv 245 (945)
|..++.++++++++|||+||++|++|++||+...+.+++++++.|+||++.+.++...+..++..++ +.|+++++||||
T Consensus 169 d~~~~~a~~~ll~~fgw~~V~ii~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~~~~~d~~~~l~~~i~~s~a~vIi 248 (479)
T 3sm9_A 169 DFYQAKAMAEILRFFNWTYVSTVASEGDYGETGIEAFEQEARLRNISIATAEKVGRSNIRKSYDSVIRELLQKPNARVVV 248 (479)
T ss_dssp THHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHTTTCEEEEEEEECC--CHHHHHHHHHHHHTCTTCCEEE
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEEecchhhHHHHHHHHHHHHHCCceEEEEEEcCCCCChHHHHHHHHHHHhcCCCeEEE
Confidence 9999999999999999999999999999999999999999999999999999888555678999999 678889999999
Q ss_pred EEcChhhHHHHHHHHHhCCCCCCCeEEEEeCCCccccCCCCCCChhHHhhhcceeEEEeecCCCchhhHHHHH-------
Q 002267 246 VHVNPDTGLTIFSVAKSLGMTAGSYVWIATDWLPSVLDSTEPVDIDTMNLLQGVVALRHHTPDTDLKKNFISR------- 318 (945)
Q Consensus 246 l~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~f~~~------- 318 (945)
+++...++..++++++++|+. ++||+++.|........ .....+.|++++.++..+.+++++|+..
T Consensus 249 ~~~~~~~~~~l~~~~~~~g~~---~~wI~s~~w~~~~~~~~----~~~~~~~G~l~~~~~~~~ipgf~~fl~~~~p~~~p 321 (479)
T 3sm9_A 249 LFMRSDDSRELIAAASRANAS---FTWVASDGWGAQESIIK----GSEHVAYGAITLELASQPVRQFDRYFQSLNPYNNH 321 (479)
T ss_dssp EECCHHHHHHHHHHHHHTTCC---CEEEECTTTTTCHHHHT----TCTTTTTTCEEEEECCCCCHHHHHHHHTCCTTTCT
T ss_pred EEcChHHHHHHHHHHHHhCCE---EEEEEechhhcCccccc----cccccCceEEEEEeccCCCcchhhHhhccCcCcCC
Confidence 999999999999999999986 79999998865311100 1124578999999999998888888654
Q ss_pred --------HHhhhcC---C----------CCCC-----CCchhHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCCCCC
Q 002267 319 --------WKNLKYK---E----------NSPS-----GFNSYALYAYDSVWLVAHALDALLNEGGKFTFSNDPKLHDTN 372 (945)
Q Consensus 319 --------~~~~~~~---~----------~~~~-----~~~~~~~~~YDav~~la~Al~~~~~~~~~~~~~~~~~~~~~~ 372 (945)
|+..|.. + +... ........+||||+++|+|||+++.+....
T Consensus 322 ~d~~~~~~w~~~f~C~~~~~~~~~~~C~~~~~l~~~~~~~~~~~~~vy~AVyavA~ALh~m~~~~~~~------------ 389 (479)
T 3sm9_A 322 RNPWFRDFWEQKFQCSLQNKRNHRRVCDKHLAIDSSNYEQESKIMFVVNAVYAMAHALHKMQRTLCPN------------ 389 (479)
T ss_dssp TCTTHHHHHHHHHTCBCCC---CSCBCCTTCCCCTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHSTT------------
T ss_pred CCHHHHHHHHHHcCCCCCCCcccccCCCCccccccCccccccchhhHHHHHHHHHHHHHHHHHhhcCC------------
Confidence 5544431 0 0000 112334689999999999999997631110
Q ss_pred CCccccCCccccCchHHHH-HHHHhcccccc------ee-eEEEccCCCCCCCcEEEEEeec----cceEEEEEec
Q 002267 373 GSMLNLSSLRVFDGGQQFL-QTLLRMNFTGL------SG-EIRFDADKNLVNPAYDVLNIGG----TGSRRIGYWS 436 (945)
Q Consensus 373 ~~~~~~~~~~~~~~~~~l~-~~l~~~~f~G~------sG-~v~fd~~g~~~~~~y~i~~~~~----~~~~~Vg~w~ 436 (945)
....|.....+ ++++|+ ++|++++|++. +| ++.||++|++ ...|+|+|++. ..+++||.|+
T Consensus 390 -~~~~c~~~~~~-~~~qL~~~~Lk~v~F~~~~~~~~~~g~~v~fd~~G~~-~~~YdI~n~~~~~~~~~~~~VG~~~ 462 (479)
T 3sm9_A 390 -TTKLCDAMKIL-DGKKLYKDYLLKINFTAPFNPNKDADSIVKFDTFGDG-MGRYNVFNFQNVGGKYSYLKVGHWA 462 (479)
T ss_dssp -CSSCCHHHHSC-CHHHHHHHTGGGCCEECTTC-----CCEECCCTTCBC-CCCEEEEEEEESSSCEEEEEEEEES
T ss_pred -CCcCCCCCCCc-ChHHHHHHHhcceeeccccCccccCCCeEEECCCCCc-ccceEEEEEEECCCcEEEEEEEEEe
Confidence 01123333333 488999 99999999998 55 6999999996 58999999973 2368999997
No 13
>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*
Probab=100.00 E-value=1.6e-46 Score=434.33 Aligned_cols=393 Identities=23% Similarity=0.389 Sum_probs=311.9
Q ss_pred CCCceEEEEEEeccCCc-----------------cccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHH
Q 002267 46 SRPSSVRIGALFTYDSV-----------------IGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEA 108 (945)
Q Consensus 46 ~~~~~i~IG~l~~l~~~-----------------~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a 108 (945)
..+++|.||++||++.. .|.....|+.+|+||||+++++|||++|+++++|+|+++..|++.+
T Consensus 13 ~~~GDi~iGglf~vh~~~~~~~~~~~~c~~~~~~~g~~~~~a~~~AieeIN~~~~lLpn~tLg~~i~D~~~~~~~a~~~a 92 (496)
T 3ks9_A 13 RMDGDVIIGALFSVHHQPPAEKVPERKCGEIREQYGIQRVEAMFHTLDKINADPVLLPNITLGSEIRDSCWHSSVALEQS 92 (496)
T ss_dssp EECCSEEEEEEECSBCCCCGGGTTTTCCCCBCTTTTHHHHHHHHHHHHHHHTCSSSSTTCCEEEEEEECTTCHHHHHHHH
T ss_pred ecCCCEEEEEEEEeEEcCccCCCCCCCCccccchhhHHHHHHHHHHHHHHhCCCCCCCCceEeEEEEEcCCCcHHHHHHH
Confidence 57899999999998731 2456789999999999999999999999999999999999999999
Q ss_pred HHHH-----------------------------hcCcEEEEccCChhHHHHHHHhhcccCccEEecccCCCCCCC-CCCC
Q 002267 109 LQLM-----------------------------ENEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTS-LQYP 158 (945)
Q Consensus 109 ~~li-----------------------------~~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~-~~~p 158 (945)
.+++ +++|.|||||.+|..+.+++++++.+++|+|+++++++.+++ .+||
T Consensus 93 ~~ll~~~~~s~~~~~~~n~~C~~~~~~~~~~~~~~~v~aviG~~~S~~s~ava~i~~~~~iP~Is~~a~~~~lsd~~~~p 172 (496)
T 3ks9_A 93 IEFIRDSLISIRDEKDGINRCLPDGQSLPPGRTKKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYK 172 (496)
T ss_dssp HHHHSTTC--------------------------CCEEEEECCSSHHHHHHHHHHHGGGTCCEEESSCCCGGGGCTTTCT
T ss_pred HHHHHhhhccccccCCCCccccCcccccccccCCCceEEEECCCccHHHHHHHHHHhhcceeEECCCcCCccccCccCCC
Confidence 9997 348999999999999999999999999999999999999999 4699
Q ss_pred ceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEeCCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhcc
Q 002267 159 YFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANL 238 (945)
Q Consensus 159 ~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~ 238 (945)
||||+.|+|..++.++++++++|||+||++|++|++||+...+.+++++++.|+||++.+.++...+..|+..++++|++
T Consensus 173 ~~frt~psd~~~~~ai~~ll~~fgw~~V~li~~dd~~G~~~~~~~~~~~~~~Gi~v~~~~~i~~~~~~~d~~~~l~~i~~ 252 (496)
T 3ks9_A 173 YFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYGESGMDAFKELAAQEGLSIAHSDKIYSNAGEKSFDRLLRKLRE 252 (496)
T ss_dssp TEEESSCCTHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCHHHHHHHHHHHHT
T ss_pred ceEEecCChHHHHHHHHHHHHHcCCcEEEEEEeccHHHHHHHHHHHHHHHHcCceEEEEEEECCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999998888755678899999999998
Q ss_pred C--CceEEEEEcChhhHHHHHHHHHhCCCCCCCeEEEEeCCCccccCCCCCCChhHHhhhcceeEEEeecCCCchhhHHH
Q 002267 239 M--ESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIATDWLPSVLDSTEPVDIDTMNLLQGVVALRHHTPDTDLKKNFI 316 (945)
Q Consensus 239 ~--~~~vivl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~f~ 316 (945)
+ +++||++++...++..++++++++|+.+ .++||++++|....... ......+.|++++.++.++.+.+++|.
T Consensus 253 ~~~~a~vii~~~~~~~~~~l~~~~~~~g~~~-k~~~i~s~~w~~~~~~~----~~~~~~~~G~l~~~~~~~~ipgf~~fl 327 (496)
T 3ks9_A 253 RLPKARVVVCFCEGMTVRGLLSAMRRLGVVG-EFSLIGSDGWADRDEVI----EGYEVEANGGITIKLQSPEVRSFDDYF 327 (496)
T ss_dssp TTTTTCEEEEECCHHHHHHHHHHHHHHTCCS-CCEEEECTTTTTCHHHH----TTCHHHHTTCEEEEECCCCCHHHHHHH
T ss_pred ccCceEEEEEecChHHHHHHHHHHHHhCCCC-cEEEEEechhccccccc----cccccccCceEEEeccCCcCcchHhHh
Confidence 5 8899999999999999999999999875 36899998775432111 112356899999999999999998887
Q ss_pred HH---------------HHhhhcC---C--------------CCCC----CCchhHHHHHHHHHHHHHHHHHHHhcCCcc
Q 002267 317 SR---------------WKNLKYK---E--------------NSPS----GFNSYALYAYDSVWLVAHALDALLNEGGKF 360 (945)
Q Consensus 317 ~~---------------~~~~~~~---~--------------~~~~----~~~~~~~~~YDav~~la~Al~~~~~~~~~~ 360 (945)
+. |...|.. . +... .........|+||+++|+|||+++.+....
T Consensus 328 ~~~~p~~~p~d~~l~~~W~~~f~C~~~~~~~~~~~~~~~C~~~~~l~~~~~~~~~~~~vy~AVyavAhALh~m~~~~~~~ 407 (496)
T 3ks9_A 328 LKLRLDTNTRNPWFPEFWQHRFQCRLPGHLLENPNFKRICTGNESLEENYVQDSKMGFVINAIYAMAHGLQNMHHALCPG 407 (496)
T ss_dssp TTCCTTTCCSCTTHHHHHHHHTTCBCCC-----CCCSSBCCSCCCTTTTCCCCTTHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred ccCCcCCCCCCHHHHHHHHHHcCCCCCCCccccccccCCCCCcccccccccccchHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 54 5444431 0 0000 001122469999999999999997642210
Q ss_pred cccCCCCCCCCCCCccccCCccccCchHHHHHHHHhcccccceee-EEEccCCCCCCCcEEEEEeec--c---ceEEEEE
Q 002267 361 TFSNDPKLHDTNGSMLNLSSLRVFDGGQQFLQTLLRMNFTGLSGE-IRFDADKNLVNPAYDVLNIGG--T---GSRRIGY 434 (945)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~sG~-v~fd~~g~~~~~~y~i~~~~~--~---~~~~Vg~ 434 (945)
....|....++ ++++|++.|++++|.+.+|+ +.||++|+. ...|+|+|++. + .+++||.
T Consensus 408 -------------~~~~c~~~~~~-~~~qL~~~Lk~v~f~~~~g~~v~fd~~gd~-~~~YdI~n~~~~~~~~~~~~~VG~ 472 (496)
T 3ks9_A 408 -------------HVGLCDAMKPI-DGSKLLDFLIKSSFIGVSGEEVWFDEKGDA-PGRYDIMNLQYTEANRYDYVHVGT 472 (496)
T ss_dssp -------------CSSCCGGGSSC-CHHHHHHHHHTCEEECTTSCEEECCTTSCC-CCEEEEEEEEECC--CEEEEEEEE
T ss_pred -------------CCCCCcCCCCC-CHHHHHHHHHhcCCcCCCCCEEEECCCCCc-cceEEEEEEEECCCCCEEEEEEEE
Confidence 11124444445 48899999999999999995 999999995 58999999973 2 3689999
Q ss_pred ecCCCCcccccccccccCCCCCCCCCcceeeEeCCCcccCCcc
Q 002267 435 WSNYSGLSVVAPEILYTKPPNSSSNRHLYSVIWPGEITATPRG 477 (945)
Q Consensus 435 w~~~~gl~~~~~~~~~~~~~~~~~~~~l~~i~W~g~~~~~P~~ 477 (945)
|+.. .|.+ +...| |.++..++|+|
T Consensus 473 ~~~~-~l~i-----------------~~~~i-w~~~~~~vP~~ 496 (496)
T 3ks9_A 473 WHEG-VLNI-----------------DDYKI-QMNKSGLVPRG 496 (496)
T ss_dssp EETT-EEEE-----------------CTTTC------------
T ss_pred EeCC-eEEE-----------------ehhhc-ccCCCCCCCCC
Confidence 9732 2221 12345 88888888875
No 14
>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*
Probab=100.00 E-value=1.1e-46 Score=424.15 Aligned_cols=340 Identities=20% Similarity=0.300 Sum_probs=283.1
Q ss_pred CCceEEEEEEeccCCccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHH-HHhcCcEEEEc----
Q 002267 47 RPSSVRIGALFTYDSVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQ-LMENEVVAAIG---- 121 (945)
Q Consensus 47 ~~~~i~IG~l~~l~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~-li~~~v~aiiG---- 121 (945)
.+++|+||+++|++ ....|+++|+++||++++. .|++|+++..|+++||.++...+++ |++++|.+|||
T Consensus 2 ~~~~i~IG~i~~~s-----~~~~~~~lAv~~iN~~~~~-~~~~l~~~~~d~~~d~~~a~~~~~~~Li~~~V~aiiG~~~~ 75 (384)
T 3qek_A 2 DPKIVNIGAVLSTK-----KHEQIFREAVNQANKRHFT-RKIQLQATSVTHRPNAIQMALSVCEDLISSQVYAILVSHPP 75 (384)
T ss_dssp CCEEEEEEEEESSH-----HHHHHHHHHHHHHHHHSCC-SSEEEEEEEEECCSSHHHHHHHHHHHTGGGTEEEEEECC--
T ss_pred CceEEEEeEEeeCc-----hHHHHHHHHHHHHhccccC-CceEEEEEEecccCCHHHHHHHHHHHHHHcCceEEEEecCC
Confidence 46789999999998 6799999999999999875 4799999999999999999977555 89889999999
Q ss_pred -cCChhHHHHHHHhhcccCccEEecccCCCCCCC-CCCCceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEeCCcccch
Q 002267 122 -PQSSGIAHVISHVVNELNVPLLSFGATDPTLTS-LQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDDYGRNG 199 (945)
Q Consensus 122 -p~~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~-~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~ 199 (945)
|.+|..+.+++++++.+++|+|+++++++.+++ .+||||||+.|++..++.+++++++++||++|++||+|++||++.
T Consensus 76 ~~~~s~~~~a~~~~~~~~~iP~is~~~~~~~ls~~~~~~~~fr~~~~~~~~~~a~~~~~~~~gw~~v~ii~~d~~~G~~~ 155 (384)
T 3qek_A 76 APTDHLTPTPISYTAGFYRIPVIGLTTRMSIYSDKSIHLSFLRTVPPYSHQALVWFEMMRLFNWNHVILIVSDDHEGRAA 155 (384)
T ss_dssp ------CCHHHHHHHHTTTCCEEESSCCCGGGGCSSSCTTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHHHHH
T ss_pred CCccchhHHHHHHHHhcCCCCEEecccCchhccCcccCCceEEecCChHHHHHHHHHHHHHcCCeEEEEEEEcCcccHHH
Confidence 678888999999999999999999999999998 578999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCcEEE-----------Ee-------ecCCC-CCChHHHHHHHHhhccCCceEEEEEcChhhHHHHHHHH
Q 002267 200 ISVLGDALSKKRAKIS-----------YK-------APFSP-GASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVA 260 (945)
Q Consensus 200 ~~~l~~~l~~~g~~v~-----------~~-------~~~~~-~~~~~d~~~~l~~l~~~~~~vivl~~~~~~~~~~~~~a 260 (945)
.+.+++++++.|++++ +. +.++. ..+..|+..++++|+++++|+||+++.+.++..++++|
T Consensus 156 ~~~~~~~~~~~g~~v~~~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~d~~~~l~~i~~~~~~vii~~~~~~~~~~~~~~a 235 (384)
T 3qek_A 156 QKKLETLLEGKESKSKKRNYENLDQLSYDNKRGPKADKVLQFEPGTKNLTALLLEAKELEARVIILSASEDDATAVYKSA 235 (384)
T ss_dssp HHHHHHHHC--------------CCSCCCCCCCCEEEEEEEECTTCSCCHHHHHHHHTSSCCEEEEECCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCccccccccccceeeeccccCcccceecccCCchhhHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHH
Confidence 9999999999998542 21 11110 13567899999999999999999999999999999999
Q ss_pred HhCCCCCCCeEEEEeCCCccccCCCCCCChhHHhhhcceeEEEeecCCCchhhHHHHHHHhhhcCCCCCCCCchhHHHHH
Q 002267 261 KSLGMTAGSYVWIATDWLPSVLDSTEPVDIDTMNLLQGVVALRHHTPDTDLKKNFISRWKNLKYKENSPSGFNSYALYAY 340 (945)
Q Consensus 261 ~~~g~~~~~~~wi~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~Y 340 (945)
+++||++++|+||.++++... ....+.++|+++++.+.++. .++++|
T Consensus 236 ~~~g~~~~~~~~i~~~~~~~~--------~~~~~~~~g~lg~~~~~~~~-------------------------~~~~~Y 282 (384)
T 3qek_A 236 AMLDMTGAGYVWLVGEREISG--------SALRYAPDGIIGLQLINGKN-------------------------ESAHIS 282 (384)
T ss_dssp HHTTCSSTTCEEECCSGGGSG--------GGGSSCCTTCEEEEETTTTC-------------------------HHHHHH
T ss_pred HHcCCccCCeEEEEecccccc--------ccccccCCccEEEEEcCCCc-------------------------hhHHHH
Confidence 999999989999999976432 12235678999999876532 267899
Q ss_pred HHHHHHHHHHHHHHhcCCcccccCCCCCCCCCCCcccc-CCccccCchHHHHHHHHhccc-ccceeeEEEccCCCCCCCc
Q 002267 341 DSVWLVAHALDALLNEGGKFTFSNDPKLHDTNGSMLNL-SSLRVFDGGQQFLQTLLRMNF-TGLSGEIRFDADKNLVNPA 418 (945)
Q Consensus 341 Dav~~la~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~f-~G~sG~v~fd~~g~~~~~~ 418 (945)
|||+++|+|+++++.+.... +....| ....+|..+..|.+.+++++| +|++|+++||++|++....
T Consensus 283 dAV~~~a~Al~~~~~~~~~~------------~~~~~c~~~~~~~~~~~~l~~~~~~~~f~~G~~G~v~fd~~G~~~~~~ 350 (384)
T 3qek_A 283 DAVAVVAQAIHELFEMENIT------------DPPRGCVGNTNIWKTGPLFKRVLMSSKYPDGVTGRIEFNEDGDRKFAQ 350 (384)
T ss_dssp HHHHHHHHHHHHHHTSSSCC------------CCCSCCTTCCCCCTTHHHHHHHHHTCCEEEETTEEECBCTTSCBCSCC
T ss_pred HHHHHHHHHHHHHHhccCCC------------CCCCccccCCCccccHHHHHHHHhcCCccCCCCcceEECCCCCCCccc
Confidence 99999999999997653211 111122 345678889999999999998 9999999999999987899
Q ss_pred EEEEEeeccceEEEEEecC
Q 002267 419 YDVLNIGGTGSRRIGYWSN 437 (945)
Q Consensus 419 y~i~~~~~~~~~~Vg~w~~ 437 (945)
|+|+|++++++++||+|+.
T Consensus 351 ~~I~~~~~~~~~~VG~w~~ 369 (384)
T 3qek_A 351 YSIMNLQNRKLVQVGIFNG 369 (384)
T ss_dssp EEEEEEETTEEEEEEEECS
T ss_pred EEEEEEcCCceEEEEEEeC
Confidence 9999999999999999984
No 15
>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*
Probab=100.00 E-value=1.2e-46 Score=434.80 Aligned_cols=371 Identities=21% Similarity=0.394 Sum_probs=281.7
Q ss_pred CCCceEEEEEEeccCC-------------ccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHH
Q 002267 46 SRPSSVRIGALFTYDS-------------VIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLM 112 (945)
Q Consensus 46 ~~~~~i~IG~l~~l~~-------------~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li 112 (945)
..+++|+||+++|++. ..|.....|+++|+||||+++++|||++|+++++|+++++..|++.+.+++
T Consensus 12 ~~~gdi~IG~lf~l~~~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~lLpn~~L~~~i~D~~~~~~~a~~~a~~ll 91 (481)
T 3mq4_A 12 RIEGDVTLGGLFPVHAKGPSGVPCGDIKRENGIHRLEAMLYALDQINSDPNLLPNVTLGARILDTCSRDTYALEQSLTFV 91 (481)
T ss_dssp EECCSEEEEEEECSBCCC-----CCSBCTTTTHHHHHHHHHHHHHHTTCSSSSSSCCEEEEEEECTTCHHHHHHHHGGGG
T ss_pred ccCCCEEEEEEEEceeCCCCCCCCccccchhhHHHHHHHHHHHHHHhCCCCcCCCceEEEEEEeCCCChHHHHHHHHHHH
Confidence 4578999999999983 257788999999999999999999999999999999999999999999998
Q ss_pred h-----------------------cCcEEEEccCChhHHHHHHHhhcccCccEEecccCCCCCCC-CCCCceEEecCChh
Q 002267 113 E-----------------------NEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTS-LQYPYFLRTTQSDY 168 (945)
Q Consensus 113 ~-----------------------~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~-~~~p~~~r~~p~d~ 168 (945)
+ ++|.|||||.+|..+.+++++++.+++|+|+++++++.|++ .+||||||+.|+|.
T Consensus 92 ~~~~~~~~pny~C~~~~~~~~~~~~~v~aiiG~~~S~~s~ava~~~~~~~iP~Is~~a~~~~lsd~~~~p~~fr~~psd~ 171 (481)
T 3mq4_A 92 QALIQKDTSDVRCTNGEPPVFVKPEKVVGVIGASGSSVSIMVANILRLFQIPQISYASTAPELSDDRRYDFFSRVVPPDS 171 (481)
T ss_dssp GGGSCCCC--------------CCCCEEEEECCSSHHHHHHHHHHHTTTTCCEEESSCCCGGGGCTTTTTTEEESSCCTH
T ss_pred hCCcccCCCCcccCCCCCcccccCCCcEEEEcCCCcHHHHHHHHHHHhCCCCEEccccCCccccCcccCCceEEecCchH
Confidence 6 46999999999999999999999999999999999999999 57999999999999
Q ss_pred HHHHHHHHHHHHcCCeEEEEEEEeCCcccchHHHHHHHHhh-cCcEEEEeecCCCCCChH--HHHHHHHhhc-cCCceEE
Q 002267 169 YQMHAVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSK-KRAKISYKAPFSPGASRS--AINSLLVGAN-LMESRVF 244 (945)
Q Consensus 169 ~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~-~g~~v~~~~~~~~~~~~~--d~~~~l~~l~-~~~~~vi 244 (945)
.++.++++++++|||+||++|++|++||+...+.+++++++ .|+||++.+.++...... ++..++.+|+ ++++|||
T Consensus 172 ~~~~a~~~ll~~fgw~~V~li~~d~~~G~~~~~~~~~~~~~~~Gi~va~~~~i~~~~~~~~~d~~~~l~~i~~~s~a~vI 251 (481)
T 3mq4_A 172 FQAQAMVDIVKALGWNYVSTLASEGSYGEKGVESFTQISKEAGGLSIAQSVRIPQERKDRTIDFDRIIKQLLDTPNSRAV 251 (481)
T ss_dssp HHHHHHHHHHHHHTCCEEEEC---CHHHHHHHHHHHHCC---CCCEECCCCCCCCC------CCSHHHHCCCCC----CE
T ss_pred HHHHHHHHHHHHCCCeEEEEEEEcchhHHHHHHHHHHHHHHhCCEEEEEEEEcCCCCccchHHHHHHHHHHHhcCCCEEE
Confidence 99999999999999999999999999999999999998885 799999988887443334 7888999998 5899999
Q ss_pred EEEcChhhHHHHHHHHHhCCCCCCCeEEEEeCCCccccCCCCCCChhHHhhhcceeEEEeecCCCchhhHHHHH------
Q 002267 245 VVHVNPDTGLTIFSVAKSLGMTAGSYVWIATDWLPSVLDSTEPVDIDTMNLLQGVVALRHHTPDTDLKKNFISR------ 318 (945)
Q Consensus 245 vl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~f~~~------ 318 (945)
|+++...++..++++++++|+.+ .++||+++.|....... ......+.|.+++.++..+.+++++|+..
T Consensus 252 i~~~~~~~~~~l~~~~~~~g~~~-~~~wI~s~~w~~~~~~~----~~~~~~~~G~l~~~~~~~~ipgf~~fl~~~~p~~~ 326 (481)
T 3mq4_A 252 VIFANDEDIKQILAAAKRADQVG-HFLWVGSDSWGSKINPL----HQHEDIAEGAITIQPKRATVEGFDAYFTSRTLENN 326 (481)
T ss_dssp EECCCSSHHHHHC-----------CCCEEEC---------------------CCCEEEEECCCCCHHHHHHHHTCCTTTC
T ss_pred EEEEChHHHHHHHHHHHHccCCc-ceEEEEECccccccccc----cccchhhccEEEEecCcCccccHHHHhhcCCcCcC
Confidence 99999999999999999999865 48999999876533221 12246689999999999999998888654
Q ss_pred ---------HHhhhcCC-----------------CCCC------CCchhHHHHHHHHHHHHHHHHHHHhcCCcccccCCC
Q 002267 319 ---------WKNLKYKE-----------------NSPS------GFNSYALYAYDSVWLVAHALDALLNEGGKFTFSNDP 366 (945)
Q Consensus 319 ---------~~~~~~~~-----------------~~~~------~~~~~~~~~YDav~~la~Al~~~~~~~~~~~~~~~~ 366 (945)
|+..|... ++.. ........+||||+++|+|||+++.+....
T Consensus 327 p~d~~~~~~w~~~f~C~~~~~~~~~~~~~~~Ct~~e~l~~~~~~~~~~~~~~vy~AVyavA~ALh~m~~~~~~~------ 400 (481)
T 3mq4_A 327 RRNVWFAEYWEENFNCKLTISGSKKEDTDRKCTGQERIGKDSNYEQEGKVQFVIDAVYAMAHALHHMNKDLCAD------ 400 (481)
T ss_dssp TTCTTHHHHHHHHHTCCC------------CCCSCCCTTTSSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHCC-------
T ss_pred CCCHHHHHHHHHhcCCCCCCccccccccCCCCCCccccCcCCcccccchhhhHHHHHHHHHHHHHHHHHhhCCC------
Confidence 44444210 0000 111445679999999999999997642210
Q ss_pred CCCCCCCCccccCCccccCchHHHHHHHHhccccccee-eEEEccCCCCCCCcEEEEEeec--c---ceEEEEEec
Q 002267 367 KLHDTNGSMLNLSSLRVFDGGQQFLQTLLRMNFTGLSG-EIRFDADKNLVNPAYDVLNIGG--T---GSRRIGYWS 436 (945)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~sG-~v~fd~~g~~~~~~y~i~~~~~--~---~~~~Vg~w~ 436 (945)
....|.....+ ++++|+++|++++|.+.+| +|.||++|++ ...|+|+||+. + .+++||.|+
T Consensus 401 -------~~~~c~~~~~~-~~~qL~~~Lk~v~F~~~~G~~v~fd~~Gd~-~~~YdI~n~~~~~~~~~~~~~VG~~~ 467 (481)
T 3mq4_A 401 -------YRGVCPEMEQA-GGKKLLKYIRNVNFNGSAGTPVMFNKNGDA-PGRYDIFQYQTTNTSNPGYRLIGQWT 467 (481)
T ss_dssp ----------CCHHHHTS-CHHHHHHHHHTCEEECTTSSEEECCTTSCC-CCEEEEEEEC-----CCCEEEEEEEE
T ss_pred -------CCCCCCCCCCc-CHHHHHHHHhcceeecCCCCEEEECCCCCC-ceeEEEEEEEECCCCcEEEEEEEEEc
Confidence 01123333344 4889999999999999999 6999999995 58999999972 2 468999997
No 16
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=100.00 E-value=3.3e-40 Score=371.92 Aligned_cols=359 Identities=16% Similarity=0.155 Sum_probs=305.5
Q ss_pred CceEEEEEEeccCC--ccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEccCC
Q 002267 48 PSSVRIGALFTYDS--VIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMEN-EVVAAIGPQS 124 (945)
Q Consensus 48 ~~~i~IG~l~~l~~--~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~-~v~aiiGp~~ 124 (945)
.++|+||+++|++. ..|.....|+++|+++||++||+++|++++++++|+++++..+.+.+.+|+++ +|.+||||.+
T Consensus 3 ~~~i~IG~~~p~sg~~~~g~~~~~g~~~a~~~iN~~ggi~Gg~~i~l~~~D~~~~~~~~~~~~~~li~~~~v~aiiG~~~ 82 (387)
T 3i45_A 3 LEAIRIGEINSYSQIPAFTLPYRNGWQLAVEQINAAGGLLGGRPLEVISRDDGGDPGKAVTAAQELLTRHGVHALAGTFL 82 (387)
T ss_dssp CCCEEEEEEECTTTCHHHHHHHHHHHHHHHHHHHHTTCBTTTBCEEEEEEECTTCHHHHHHHHHHHHHHHCCSEEEECCS
T ss_pred CCCEEEEEeecCCCchhhhHHHHHHHHHHHHHHHhcCCCCCCcceEEEEecCCCCHHHHHHHHHHHHHhcCCEEEECCcc
Confidence 46899999999985 35778899999999999999999855999999999999999999999999986 9999999999
Q ss_pred hhHHHHHHHhhcccCccEEecccCCCCCCC-CCCCceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEeCCcccchHHHH
Q 002267 125 SGIAHVISHVVNELNVPLLSFGATDPTLTS-LQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDDYGRNGISVL 203 (945)
Q Consensus 125 s~~~~~va~~~~~~~iP~Is~~a~~~~ls~-~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l 203 (945)
|..+.+++++++..+||+|++.++++.++. ..+||+||+.|++..++.++++++.++||++|++|+.|++||+...+.+
T Consensus 83 s~~~~a~~~~~~~~~ip~i~~~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g~~~~~~~ 162 (387)
T 3i45_A 83 SHVGLAVSDFARQRKVLFMASEPLTDALTWEKGNRYTYRLRPSTYMQAAMLAAEAAKLPITRWATIAPNYEYGQSAVARF 162 (387)
T ss_dssp HHHHHHHHHHHHHHTCCEEECSCCCGGGTTTTCCTTEEECSCCHHHHHHHHHHHHTTSSCCEEEEECCSSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCceEEecCCCchhhhhccCCCCEEEeCCChHHHHHHHHHHHHHcCCCeEEEEeCCchHhHHHHHHH
Confidence 999999999999999999999998888875 5689999999999999999999999999999999999999999999999
Q ss_pred HHHHhhc--CcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcChhhHHHHHHHHHhCCCCCCCeEEEEeCCCc--
Q 002267 204 GDALSKK--RAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIATDWLP-- 279 (945)
Q Consensus 204 ~~~l~~~--g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~-- 279 (945)
++++++. |++++....++ .+..|+...++++++.++|+|++++...++..++++++++|+... +++.+....
T Consensus 163 ~~~l~~~~~g~~vv~~~~~~--~~~~d~~~~~~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~--~~i~~~~~~~~ 238 (387)
T 3i45_A 163 KELLLAARPEVTFVAEQWPA--LYKLDAGPTVQALQQAEPEGLFNVLFGADLPKFVREGRVRGLFAG--RQVVSMLTGEP 238 (387)
T ss_dssp HHHHHHHCTTCEEEEEECCC--TTCCCHHHHHHHHHHTCCSEEEECCCTTHHHHHHHHHHHHTSSTT--CEEEEEEEESH
T ss_pred HHHHHHhCCCcEEEeeecCC--CCCcCHHHHHHHHHhCCCCEEEEcCccHHHHHHHHHHHHcCCCCC--CeEEeecCCCh
Confidence 9999998 89999888777 456789999999999999999999999999999999999998543 344332211
Q ss_pred cccCCCCCCChhHHhhhcceeEEEe-ec-CCCchhhHHHHHHHhhhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhcC
Q 002267 280 SVLDSTEPVDIDTMNLLQGVVALRH-HT-PDTDLKKNFISRWKNLKYKENSPSGFNSYALYAYDSVWLVAHALDALLNEG 357 (945)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~G~~~~~~-~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~~~~~~ 357 (945)
..+.. ......+|++.... +. ++++..++|.++|++++ +..|+.++..+|||++++++|++++..
T Consensus 239 ~~~~~------~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~-----~~~p~~~~~~~Yda~~~~a~Al~~ag~-- 305 (387)
T 3i45_A 239 EYLNP------LKDEAPEGWIVTGYPWYDIDTAPHRAFVEAYRARW-----KEDPFVGSLVGYNTLTAMAVAFEKAGG-- 305 (387)
T ss_dssp HHHGG------GGGGCCSSCEEEECCGGGCCCHHHHHHHHHHHHHH-----SSCCCHHHHHHHHHHHHHHHHHHHHTS--
T ss_pred HHHHH------hhhhccCceEEecccccCCCCHHHHHHHHHHHHHH-----CCCCCcHHHHHHHHHHHHHHHHHHhCC--
Confidence 11111 01134678776532 32 57789999999999998 557789999999999999999999621
Q ss_pred CcccccCCCCCCCCCCCccccCCccccCchHHHHHHHHhcccccceeeEEEccCCCCCCCcEEEEEee-ccceEEEEEec
Q 002267 358 GKFTFSNDPKLHDTNGSMLNLSSLRVFDGGQQFLQTLLRMNFTGLSGEIRFDADKNLVNPAYDVLNIG-GTGSRRIGYWS 436 (945)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~sG~v~fd~~g~~~~~~y~i~~~~-~~~~~~Vg~w~ 436 (945)
.+++.|.++|++++|+|++|+++|+++++.......|.+++ .++..+++.|.
T Consensus 306 ---------------------------~~~~~v~~al~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~~g~~~i~~w~ 358 (387)
T 3i45_A 306 ---------------------------TESETLVETLKDMAFSTPMGPLSFRASDHQSTMGAWVGRTALRDGKGVMVDWR 358 (387)
T ss_dssp ---------------------------CCHHHHHHHTTTCEEEETTEEEEBCTTTCBBCCCEEEEEEEEETTEEEEEEEE
T ss_pred ---------------------------CCHHHHHHHHhcCCCcCCCCCeEEcCCCCccccceeEEEEEeeCCceeEEeeE
Confidence 15899999999999999999999997544456677777775 56779999999
Q ss_pred CCCCcccccccccc
Q 002267 437 NYSGLSVVAPEILY 450 (945)
Q Consensus 437 ~~~gl~~~~~~~~~ 450 (945)
...|..+.+++..+
T Consensus 359 ~~~~~~~~p~~~~~ 372 (387)
T 3i45_A 359 YVDGGSVLPPPEVV 372 (387)
T ss_dssp EECGGGGSCCHHHH
T ss_pred EeCchhcCCCHHHH
Confidence 98888777765443
No 17
>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*
Probab=100.00 E-value=3.4e-40 Score=365.52 Aligned_cols=339 Identities=14% Similarity=0.220 Sum_probs=260.7
Q ss_pred CceEEEEEEeccCCccccchHHHHHHHHHHHhcCCCCCCCcEEEEEE-ecCCCChHHHHHHHHHHHhc-CcEEEEc-cCC
Q 002267 48 PSSVRIGALFTYDSVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVI-RDTNCSGFVGTMEALQLMEN-EVVAAIG-PQS 124 (945)
Q Consensus 48 ~~~i~IG~l~~l~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~-~D~~~~~~~a~~~a~~li~~-~v~aiiG-p~~ 124 (945)
+..+.||++|.-++. ..+++-|++..|.-.. ..++..++ ..+.+||..+...+|+++.+ +|.|||| |.+
T Consensus 2 ~~~~~v~~~~~~~~~-----~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~dp~~~~~~~C~~l~~~~V~aiIgg~~s 73 (364)
T 3qel_B 2 PPSIGIAVILVGTSD-----EVAIKDAHEKDDFHHL---SVVPRVELVAMNETDPKSIITRICDLMSDRKIQGVVFADDT 73 (364)
T ss_dssp CCEEEEEEEEESSCC-----HHHHTC---------C---CSEEEEEEEEECCCSHHHHHHHHHHHHHHSCEEEEEEEESS
T ss_pred CCceEEEEEEcccch-----hhhhccccCccccccC---CccceEEEEEecCCCHHHHHHHHHHHHHhCCeEEEEecCCC
Confidence 357999999976642 7888889999885432 25677654 44778999999999999976 7989885 444
Q ss_pred hhHHHH--HHHhhcccCccEEecccCCC-CCCC-CCCCceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEeCCcccchH
Q 002267 125 SGIAHV--ISHVVNELNVPLLSFGATDP-TLTS-LQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDDYGRNGI 200 (945)
Q Consensus 125 s~~~~~--va~~~~~~~iP~Is~~a~~~-~ls~-~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~ 200 (945)
+..+.+ ++.+++.++||+|++++++| .+++ .+||+|||+.|+|..|+.++++++++|||++|++||+|+ .+.
T Consensus 74 ~~~a~a~~v~~i~~~~~iP~IS~~at~~~~lsd~~~~p~f~Rt~psd~~q~~ai~~ll~~fgW~~V~iI~~d~----~g~ 149 (364)
T 3qel_B 74 DQEAIAQILDFISAQTLTPILGIHGGSSMIMADKDESSMFFQFGPSIEQQASVMLNIMEEYDWYIFSIVTTYF----PGY 149 (364)
T ss_dssp CCTHHHHHHHHHHHHHTCCEEEEEGGGGSCCSSCCTTCCEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESC----TTH
T ss_pred CchHHHHHHHHHHhccCCCEEEeecCCCCcCCCcccCceEEEcCCChHHHHHHHHHHHHHCCCeEEEEEEeCC----ccH
Confidence 444545 89999999999999999998 8998 569999999999999999999999999999999999884 344
Q ss_pred HHHHHHHhhc--C--cEEEEeecCCCCCChHHHHHHH-HhhccCCceEEEEEcChhhHHHHHHHHHhCCCCCCCeEEEEe
Q 002267 201 SVLGDALSKK--R--AKISYKAPFSPGASRSAINSLL-VGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIAT 275 (945)
Q Consensus 201 ~~l~~~l~~~--g--~~v~~~~~~~~~~~~~d~~~~l-~~l~~~~~~vivl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~ 275 (945)
+.+.+.+++. | +|+.+...++...+..++...+ ++|++++++|||++++.+.+..++++|.++||++++|+||++
T Consensus 150 ~~~~~~l~~~~~~~~ici~~~~~i~~~~~~~~~~~~l~~~i~~~~a~ViIv~~~~~~~~~ll~~a~~~g~~~~~y~wI~t 229 (364)
T 3qel_B 150 QDFVNKIRSTIENSFVGWELEEVLLLDMSLDDGDSKIQNQLKKLQSPIILLYCTKEEATYIFEVANSVGLTGYGYTWIVP 229 (364)
T ss_dssp HHHHHHHHHHHHTCSSCCEEEEEEEECTTSCSSSCHHHHHHTTCCCSEEEEESCHHHHHHHHHHHHTTTCSSTTCEEEEC
T ss_pred HHHHHHHHHHhhccccceEEEEEEccCCCcccHHHHHHHHHHccCCcEEEEEcCHHHHHHHHHHHHHcCCCCCCeEEEEe
Confidence 5566666554 4 4777666554334556777788 689999999999999999999999999999999999999999
Q ss_pred CCCccccCCCCCCChhHHhhhcceeEEEeecCCCchhhHHHHHHHhhhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHHh
Q 002267 276 DWLPSVLDSTEPVDIDTMNLLQGVVALRHHTPDTDLKKNFISRWKNLKYKENSPSGFNSYALYAYDSVWLVAHALDALLN 355 (945)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~~~~ 355 (945)
+++....+.. + .+...|+++++++. |++ .+..++||||+++|+|++++..
T Consensus 230 ~~~~~~~~~~---~---~~~~~g~~~~~~~~------------W~~------------~~~~~~yDaV~~~A~A~~~~~~ 279 (364)
T 3qel_B 230 SLVAGDTDTV---P---SEFPTGLISVSYDE------------WDY------------GLPARVRDGIAIITTAASDMLS 279 (364)
T ss_dssp HHHHCSTTCC---C---TTSCTTCEECCBCT------------TTS------------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred cccccCcccc---c---ccCCCceEEEeecc------------chh------------hHHHHHHHHHHHHHHHHHHHHh
Confidence 8754333321 1 14567888877643 332 2457899999999999999876
Q ss_pred cCCcccccCCCCCCCCCCCccccCCc--cccCchHHHHHHHHhcccccceeeEEEccCCCCCCCcEEEEEee-ccceEEE
Q 002267 356 EGGKFTFSNDPKLHDTNGSMLNLSSL--RVFDGGQQFLQTLLRMNFTGLSGEIRFDADKNLVNPAYDVLNIG-GTGSRRI 432 (945)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~f~G~sG~v~fd~~g~~~~~~y~i~~~~-~~~~~~V 432 (945)
+.+.++ .....|... .+|.+|..|+++|++++|+|+ ++.||++|++.++.|+|+|++ ++++++|
T Consensus 280 ~~~~i~-----------~~~~~C~~~~~~~~~~G~~l~~~l~~v~f~Gl--~i~F~~~G~~~~~~~~Iinl~~~~~~~~V 346 (364)
T 3qel_B 280 EHSFIP-----------EPKSSCYNTHEKRIYQSNMLNRYLINVTFEGR--DLSFSEDGYQMHPKLVIILLNKERKWERV 346 (364)
T ss_dssp TTSCCC-----------CCCSCSTTTTTGGGGCCSTTHHHHTCCEETTE--ECCBCTTSSBSSCCEEEEEECTTSCEEEE
T ss_pred ccCCCC-----------CCCCCCCCCCCCccCCHHHHHHHHhhceEeCc--eEEECCCCCcccceEEEEEEcCCCCcEEE
Confidence 543332 122345444 367789999999999999998 899999999999999999998 6789999
Q ss_pred EEecCCCCcc
Q 002267 433 GYWSNYSGLS 442 (945)
Q Consensus 433 g~w~~~~gl~ 442 (945)
|+|++ .+|.
T Consensus 347 G~W~~-~~L~ 355 (364)
T 3qel_B 347 GKWKD-KSLQ 355 (364)
T ss_dssp EEECS-SCEE
T ss_pred EEECC-CeEE
Confidence 99984 3443
No 18
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=100.00 E-value=3.6e-39 Score=360.67 Aligned_cols=336 Identities=16% Similarity=0.226 Sum_probs=288.5
Q ss_pred CceEEEEEEeccC---CccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCC-ChHHHHHHHHHHHhc-CcEEEEcc
Q 002267 48 PSSVRIGALFTYD---SVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNC-SGFVGTMEALQLMEN-EVVAAIGP 122 (945)
Q Consensus 48 ~~~i~IG~l~~l~---~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~-~~~~a~~~a~~li~~-~v~aiiGp 122 (945)
.++|+||+++|+| +..|...+.|+++|++++| +++ .|++|+++++|+++ +|..+.+.+.+|+++ +|.+||||
T Consensus 3 Ad~IkIG~~~plSG~~a~~G~~~~~g~~la~~~~n--ggi-~G~~ielv~~D~~~~~p~~a~~~a~~Li~~d~V~aiiG~ 79 (371)
T 4f06_A 3 ADTIKVGVIGTMSGPYALFGKNYKMGIDAWVAEHG--NKV-AGHTVEFVYRDEVSPNPAQSKALAQELIVKEKVQYLAGL 79 (371)
T ss_dssp -CEEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHC--SEE-TTEEEEEEEEECCSSCHHHHHHHHHHHHHTSCCSEEEEC
T ss_pred CCcEEEEEEeCCcCchHHhHHHHHHHHHHHHHHhC--CCC-CCEEEEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEEec
Confidence 4689999999998 4568899999999999998 667 49999999999986 899999999999986 99999999
Q ss_pred CChhHHHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEeCCcccchHHH
Q 002267 123 QSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDDYGRNGISV 202 (945)
Q Consensus 123 ~~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~ 202 (945)
.+|..+.++++++++.++|+|+++++++.++.. .||+||+.+++..++.++++++++.+|++|++|+.|++||+...+.
T Consensus 80 ~~S~~~~a~~~~~~~~~vp~i~~~a~~~~~~~~-~~~~fr~~~~~~~~~~~~~~~~~~~g~k~vaii~~~~~~g~~~~~~ 158 (371)
T 4f06_A 80 YFTPNAMAVAPLLQEAKVPMVVMNAATSSITEK-SPYIVRTSFTMFQNTVPAAKVAKQKGATKVAIAVSDYGPGIDAETA 158 (371)
T ss_dssp CSHHHHHHHGGGHHHHTCCEEESSCCCGGGGGG-CTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHH
T ss_pred ccccchHHHHHHHHhhcCCccccccccchhccc-CCcceecccchhhhhhhhhhhhhhcCceEEEEEcCCcccchhHHHH
Confidence 999999999999999999999999999988764 4999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcC-hhhHHHHHHHHHhCCCCCCCeEEEEeCCCccc
Q 002267 203 LGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN-PDTGLTIFSVAKSLGMTAGSYVWIATDWLPSV 281 (945)
Q Consensus 203 l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~-~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~ 281 (945)
+++.+++.|++|+..+.++ .+.+|++.++.+|+++++|+|++... +.++..+++++++.|+...++.++.+......
T Consensus 159 ~~~~~~~~g~~vv~~~~~~--~~~~d~~~~l~~i~~~~pd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 236 (371)
T 4f06_A 159 FKKTFEAEGGKVVEAVRMP--LSTTDFGPIMQRIKNSGADMIFTFLPAGPPTLGFVKAYIDNGLKAGGVKLMSTGDVVTE 236 (371)
T ss_dssp HHHHHHHTTCEEEEEEEEC--TTCCCCHHHHHHHHHHTCSEEEEECCTTHHHHHHHHHHHHTTTTTTTCEEEEEGGGGCG
T ss_pred HHHHHHhcCCceEEEEecC--cccccHHHHHHHHHhcCCCEEEEEeccCchhhHHHHHHHHhhhhccCcEEEEecccCCH
Confidence 9999999999999999998 67789999999999999999988764 57788899999999998777777766533222
Q ss_pred cCCCCCCChhHHhhhcceeEEEeecC--CCchhhHHHHHHHhhhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhcCCc
Q 002267 282 LDSTEPVDIDTMNLLQGVVALRHHTP--DTDLKKNFISRWKNLKYKENSPSGFNSYALYAYDSVWLVAHALDALLNEGGK 359 (945)
Q Consensus 282 ~~~~~~~~~~~~~~~~G~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~~~~~~~~ 359 (945)
... ....+...|++...++.+ +++..++|+++|++++. ....++.++..+||+++++++|+++. .++
T Consensus 237 ~~~-----~~~~~~~~g~~~~~~~~~~~~~p~~~~f~~~~~~~~~---~~~~~~~~a~~~Yda~~~l~~Ai~~~---ag~ 305 (371)
T 4f06_A 237 PDL-----PNIGEAGLGILSTYHYAVSHDSPENKAFLALLQKGGA---KLDEVTMTSVAAYDGARLIYKMIEAT---SGK 305 (371)
T ss_dssp GGH-----HHHCGGGTTCEEEESCCTTCCSHHHHHHHHHHHHTTC---CGGGCCHHHHHHHHHHHHHHHHHHHT---TTS
T ss_pred HHH-----HhcccccCceEEeeccccCCCChhHHHHHHHHHHhcC---CCCCccchHHHHHHHHHHHHHHHHHh---cCC
Confidence 111 223356778888877655 46788999999999871 12357889999999999999999873 111
Q ss_pred ccccCCCCCCCCCCCccccCCccccCchHHHHHHHHhcccccceeeEEEccCCCCCCCcEEEEEee
Q 002267 360 FTFSNDPKLHDTNGSMLNLSSLRVFDGGQQFLQTLLRMNFTGLSGEIRFDADKNLVNPAYDVLNIG 425 (945)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~sG~v~fd~~g~~~~~~y~i~~~~ 425 (945)
.+++.++++|++++|+|++|+++||++++.....+.|.+++
T Consensus 306 -------------------------~d~~~v~~al~~~~~~~~~G~i~fd~~~~~~~~~~~i~~v~ 346 (371)
T 4f06_A 306 -------------------------SDPDKAIAAVKGMKWVSPRGEVSIDPETRHITQNVYLREVE 346 (371)
T ss_dssp -------------------------CCHHHHHHHHTTCEEEETTEEEEECTTTCBEEEEEEEEEEE
T ss_pred -------------------------CCHHHHHHHHhCCCeeCCcEEEEEcCCCCcccCCEEEEEEE
Confidence 15899999999999999999999998776566677888886
No 19
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=100.00 E-value=1e-39 Score=371.96 Aligned_cols=344 Identities=15% Similarity=0.060 Sum_probs=284.1
Q ss_pred CCceEEEEEEeccCC---ccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCC-CChHHHHHHHHHHHh-cCcEEEEc
Q 002267 47 RPSSVRIGALFTYDS---VIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTN-CSGFVGTMEALQLME-NEVVAAIG 121 (945)
Q Consensus 47 ~~~~i~IG~l~~l~~---~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~-~~~~~a~~~a~~li~-~~v~aiiG 121 (945)
..++|+||+++|++. ..|.....|+++|+++||++||++ |++|+++++|++ |++..+.+.+.+|++ ++|.+|||
T Consensus 11 ~~~~i~IG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~ggi~-G~~i~l~~~D~~~~~~~~a~~~a~~li~~~~v~aiiG 89 (419)
T 3h5l_A 11 SSDPVVIGCPAPLTGIVAADGIEFQRGIQMAADEINAVGGIL-GRPIELVFADTQSKGVDVVIQSAQRLIDRDNASALIA 89 (419)
T ss_dssp --CCEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHTTTSBT-TBCEEEEEEECTTCCHHHHHHHHHHHHHTTCCSEEEC
T ss_pred cCCCEEEEEeecCCCcccccCHHHHHHHHHHHHHHHhcCCcC-ceEEEEEEccCCCCCHHHHHHHHHHHhhhcCCeEEEc
Confidence 456899999999984 458899999999999999999997 899999999998 699999999999998 59999999
Q ss_pred cCChhHHHHHHHhhcccCccEEecccCCCCCC-----C-CCCCceEEecCChhHHHHHHHHHHHHc--------CCeEEE
Q 002267 122 PQSSGIAHVISHVVNELNVPLLSFGATDPTLT-----S-LQYPYFLRTTQSDYYQMHAVADLVEYY--------GWREVI 187 (945)
Q Consensus 122 p~~s~~~~~va~~~~~~~iP~Is~~a~~~~ls-----~-~~~p~~~r~~p~d~~~~~ai~~~l~~~--------~w~~v~ 187 (945)
|.+|..+.+++++++.++||+|+++ +++.++ + ..|+|+||+.|++..++.+++++++++ +|++|+
T Consensus 90 ~~~s~~~~a~~~~~~~~~ip~i~~~-~~~~~~~~~~~~~~~~~~~f~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~va 168 (419)
T 3h5l_A 90 GYNLENGTALHDVAADAGVIAMHAN-TVAVHDEMVKSDPDRYWGTFQYDPPETLYGGGFLKFLKDIEDNGEFSRPNNKIA 168 (419)
T ss_dssp SCCSSCSCHHHHHHHHHTCEEEECC-CCHHHHHHHHHCTTTCTTEEESSCCTHHHHHHHHHHHHHHHHTTSCCCSSSEEE
T ss_pred cccchhHHHhHHHHHHcCCeEEEcC-cchhhhhhhhcCcccCceEEEeCCchHHHHHHHHHHHHHHHhhccccCCCCEEE
Confidence 9999999999999999999999964 333322 2 468999999999999999999999886 899999
Q ss_pred EEEEeCCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcC-hhhHHHHHHHHHhCCCC
Q 002267 188 AIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN-PDTGLTIFSVAKSLGMT 266 (945)
Q Consensus 188 ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~-~~~~~~~~~~a~~~g~~ 266 (945)
+||+|++||+...+.+++.+++.|++|+..+.++ .+..|++.++++|++.++|+|++.+. +.++..++++++++|+
T Consensus 169 il~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~--~~~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~~g~- 245 (419)
T 3h5l_A 169 IITGPGIYSVNIANAIRDGAGEYGYDVSLFETVA--IPVSDWGPTLAKLRADPPAVIVVTHFYPQDQALFMNQFMTDPT- 245 (419)
T ss_dssp EEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECC--SSCSCCHHHHHHHHHSCCSEEEECCCCHHHHHHHHHHHTTSCC-
T ss_pred EEEcCcchhHHHHHHHHHHHHHcCCeEEEEecCC--CCCccHHHHHHHHHhcCCCEEEEccccCchHHHHHHHHHHcCC-
Confidence 9999999999999999999999999999988887 56689999999999999999999865 5789999999999998
Q ss_pred CCCeEEEEeCCCccccCCCCCCChhHHhhhcceeEEEee-cCCCchhhHHHHHHHhhhcCCCCCCCCc-hhHHHHHHHHH
Q 002267 267 AGSYVWIATDWLPSVLDSTEPVDIDTMNLLQGVVALRHH-TPDTDLKKNFISRWKNLKYKENSPSGFN-SYALYAYDSVW 344 (945)
Q Consensus 267 ~~~~~wi~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~~~~~-~~~~~~YDav~ 344 (945)
...|+.++++... +. .+...+..+|++....+ .++++..++|.++|+++| +..+. .++..+|||++
T Consensus 246 --~~~~~~~~~~~~~-~~----~~~~g~~~~G~~~~~~~~~~~~~~~~~f~~~~~~~~-----g~~p~~~~a~~~Yda~~ 313 (419)
T 3h5l_A 246 --NSLVYLQYGASLA-AF----RDIAGDNSVGVTYATVLGTLQDEMGDAFAKAYKERY-----GDLSSTASGCQTYSALY 313 (419)
T ss_dssp --SCEEEECSGGGSH-HH----HHHHGGGGTTCEEEESSCCCSSHHHHHHHHHHHHHH-----CTTSCHHHHHHHHHHHH
T ss_pred --CceEEecCCCCcH-HH----HHhhhhhcCceEEeecCCCCCCHHHHHHHHHHHHHh-----CCCCCcchhHHHHHHHH
Confidence 3467776655321 00 01223567888766544 346678999999999998 44444 69999999999
Q ss_pred HHHHHHHHHHhcCCcccccCCCCCCCCCCCccccCCccccCchHHHHHHHHhcccccceeeEEEccCCCCC---------
Q 002267 345 LVAHALDALLNEGGKFTFSNDPKLHDTNGSMLNLSSLRVFDGGQQFLQTLLRMNFTGLSGEIRFDADKNLV--------- 415 (945)
Q Consensus 345 ~la~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~sG~v~fd~~g~~~--------- 415 (945)
++++|++++.+... .| .+.+++.|.++|++++|+|++|.++||++|+..
T Consensus 314 ~~~~a~~~a~~~~~-------------~g---------~~~~~~~l~~al~~~~~~g~~G~i~f~~~g~~~~~~~~~~~~ 371 (419)
T 3h5l_A 314 AYSIAAALAGGPGA-------------PY---------DDVQNKAVADRLRSLIFRGPVGTMRFHADTQSAWSYPTETND 371 (419)
T ss_dssp HHHHHHHHTTSCCC-------------TT---------CHHHHHHHHHHHHHCEEEETTEEEEBCTTTCBBCEETTTCSC
T ss_pred HHHHHHHHhcCCcc-------------CC---------CccCHHHHHHHHHhCCcccCceEEEECCCCCccccccCccCC
Confidence 99999998532110 01 112588999999999999999999999999842
Q ss_pred ---CCcEEEEEeeccce
Q 002267 416 ---NPAYDVLNIGGTGS 429 (945)
Q Consensus 416 ---~~~y~i~~~~~~~~ 429 (945)
...+.|++++++++
T Consensus 372 ~~~~~~~~i~q~q~g~~ 388 (419)
T 3h5l_A 372 PSLGMPHIFSQIFDKAE 388 (419)
T ss_dssp TTSSEECEEEECCCTTS
T ss_pred ccccCCceEEEeeCCce
Confidence 12355777777766
No 20
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=100.00 E-value=2.6e-38 Score=353.66 Aligned_cols=342 Identities=17% Similarity=0.202 Sum_probs=297.0
Q ss_pred CCCceEEEEEEeccC---CccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEc
Q 002267 46 SRPSSVRIGALFTYD---SVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMEN-EVVAAIG 121 (945)
Q Consensus 46 ~~~~~i~IG~l~~l~---~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~-~v~aiiG 121 (945)
..+.+++||+++|+| +..|.....|+++|++++|+ + .|++++++++|+++++..+.+.+.+|+++ +|.+|||
T Consensus 12 ~~~~~~~iG~~~plsG~~a~~g~~~~~g~~~a~~~in~---i-~G~~i~l~~~D~~~~~~~~~~~~~~l~~~~~v~~iiG 87 (366)
T 3td9_A 12 HMRKVVKIAVILPMTGGISAFGRMVWEGIQIAHEEKPT---V-LGEEVELVLLDTRSEKTEAANAAARAIDKEKVLAIIG 87 (366)
T ss_dssp ----CEEEEEEECCSSTTHHHHHHHHHHHHHHHHHCCE---E-TTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred hhcceEEEEEEECCcCcchhcCHHHHHHHHHHHHHhhh---c-CCeEEEEEEecCCCCHHHHHHHHHHHhccCCeEEEEc
Confidence 346789999999999 45688999999999999998 5 48999999999999999999999999998 5999999
Q ss_pred cCChhHHHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHH-HHcCCeEEEEEEE-eCCcccch
Q 002267 122 PQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLV-EYYGWREVIAIFV-DDDYGRNG 199 (945)
Q Consensus 122 p~~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l-~~~~w~~v~ii~~-d~~~g~~~ 199 (945)
|.+|..+.+++++++.++||+|++.++++.+++ .+||+||+.|++..++.++++++ +++||++|++||. +++||...
T Consensus 88 ~~~s~~~~~~~~~~~~~~iP~i~~~~~~~~~~~-~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~~~~~ 166 (366)
T 3td9_A 88 EVASAHSLAIAPIAEENKVPMVTPASTNPLVTQ-GRKFVSRVCFIDPFQGAAMAVFAYKNLGAKRVVVFTDVEQDYSVGL 166 (366)
T ss_dssp CSSHHHHHHHHHHHHHTTCCEEESSCCCGGGTT-TCSSEEESSCCHHHHHHHHHHHHHHTSCCCEEEEEEETTCHHHHHH
T ss_pred cCCchhHHHHHHHHHhCCCeEEecCCCCccccC-CCCCEEEEeCCcHHHHHHHHHHHHHhcCCcEEEEEEeCCCcHHHHH
Confidence 999999999999999999999999888888765 57999999999999999999988 6689999999987 68899999
Q ss_pred HHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcChhhHHHHHHHHHhCCCCCCCeEEEEeCCCc
Q 002267 200 ISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIATDWLP 279 (945)
Q Consensus 200 ~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~ 279 (945)
.+.+++++++.|++++... ++ .+..|+...++++++.++|+|++.+...++..+++++++.|+.. .|+.++++.
T Consensus 167 ~~~~~~~~~~~G~~v~~~~-~~--~~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~~~ 240 (366)
T 3td9_A 167 SNFFINKFTELGGQVKRVF-FR--SGDQDFSAQLSVAMSFNPDAIYITGYYPEIALISRQARQLGFTG---YILAGDGAD 240 (366)
T ss_dssp HHHHHHHHHHTTCEEEEEE-EC--TTCCCCHHHHHHHHHTCCSEEEECSCHHHHHHHHHHHHHTTCCS---EEEECGGGC
T ss_pred HHHHHHHHHHCCCEEEEEE-eC--CCCccHHHHHHHHHhcCCCEEEEccchhHHHHHHHHHHHcCCCc---eEEeeCCcC
Confidence 9999999999999999887 76 45678889999999999999999999999999999999999864 477766543
Q ss_pred cccCCCCCCChhHHhhhcceeEEEeecCC---CchhhHHHHHHHhhhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhc
Q 002267 280 SVLDSTEPVDIDTMNLLQGVVALRHHTPD---TDLKKNFISRWKNLKYKENSPSGFNSYALYAYDSVWLVAHALDALLNE 356 (945)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~---~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~~~~~ 356 (945)
... . .....+..+|++....+.|. .+..++|.++|+++| +..|+.++..+|||++++++|++++..
T Consensus 241 ~~~-~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~-----g~~p~~~~~~~yda~~~~~~al~~ag~- 309 (366)
T 3td9_A 241 APE-L----IEIGGEAVEGLLFTTHYHPKAASNPVAKKFVEVYKEKY-----GKEPAALNALGYDAYMVLLDAIERAGS- 309 (366)
T ss_dssp STH-H----HHHHGGGGTTCEEEESCCGGGCCSHHHHHHHHHHHHHH-----SSCCCHHHHHHHHHHHHHHHHHHHHTS-
T ss_pred CHH-H----HHHHhHHhCCeEEEEeeCCCCCCCHHHHHHHHHHHHHH-----CCCCchhHHHHHHHHHHHHHHHHHhCC-
Confidence 210 0 02233567899888877665 678899999999998 556889999999999999999999621
Q ss_pred CCcccccCCCCCCCCCCCccccCCccccCchHHHHHHHHhcc-cccceeeEEEccCCCCCCCcEEEEEeeccceEEEEEe
Q 002267 357 GGKFTFSNDPKLHDTNGSMLNLSSLRVFDGGQQFLQTLLRMN-FTGLSGEIRFDADKNLVNPAYDVLNIGGTGSRRIGYW 435 (945)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-f~G~sG~v~fd~~g~~~~~~y~i~~~~~~~~~~Vg~w 435 (945)
.+++.|.++|++++ |+|++|+++||++|++. ..+.|+++++++++.|+.|
T Consensus 310 ----------------------------~~~~~~~~~l~~~~~~~g~~G~i~f~~~g~~~-~~~~i~~~~~g~~~~v~~~ 360 (366)
T 3td9_A 310 ----------------------------FDREKIAEEIRKTRNFNGASGIINIDENGDAI-KSVVVNIVKNGSVDFEAVI 360 (366)
T ss_dssp ----------------------------CCHHHHHHHHTTCCSEEETTEEECBCTTSCBC-CCEEEEEEETTEEEEEEEE
T ss_pred ----------------------------CCHHHHHHHHHhCCCCcccceeeEECCCCCcc-CceEEEEEECCEEEEEEec
Confidence 15899999999998 99999999999999876 4599999999999999999
Q ss_pred cCC
Q 002267 436 SNY 438 (945)
Q Consensus 436 ~~~ 438 (945)
++.
T Consensus 361 ~~~ 363 (366)
T 3td9_A 361 NPD 363 (366)
T ss_dssp CGG
T ss_pred Chh
Confidence 874
No 21
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=100.00 E-value=2e-38 Score=353.12 Aligned_cols=344 Identities=18% Similarity=0.150 Sum_probs=297.7
Q ss_pred ceEEEEEEeccCC---ccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCCh
Q 002267 49 SSVRIGALFTYDS---VIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAIGPQSS 125 (945)
Q Consensus 49 ~~i~IG~l~~l~~---~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s 125 (945)
++|+||+++|++. ..|.....|+++|++++|++||+ +|+++++++.|+++++..+.+.+.+|++++|.+||||.+|
T Consensus 1 ~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~iN~~ggi-~G~~~~l~~~d~~~~~~~~~~~~~~l~~~~v~~iig~~~s 79 (356)
T 3ipc_A 1 MDVVIAVGAPLTGPNAAFGAQIQKGAEQAAKDINAAGGI-NGEQIKIVLGDDVSDPKQGISVANKFVADGVKFVVGHANS 79 (356)
T ss_dssp CCEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHTTCB-TTBCEEEEEEECTTCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred CeEEEEEeeCCCCcchhhCHHHHHHHHHHHHHHHhcCCC-CCeEEEEEEecCCCCHHHHHHHHHHHHHCCCcEEEcCCCc
Confidence 4799999999984 46788999999999999999998 5999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHH-HHcCCeEEEEEEEeCCcccchHHHHH
Q 002267 126 GIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLV-EYYGWREVIAIFVDDDYGRNGISVLG 204 (945)
Q Consensus 126 ~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l-~~~~w~~v~ii~~d~~~g~~~~~~l~ 204 (945)
..+.+++++++..++|+|++.++++.+++..+|++||+.|++..++.++++++ +++||++|++|+.+++||+...+.++
T Consensus 80 ~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~~~~~~~~~ 159 (356)
T 3ipc_A 80 GVSIPASEVYAENGILEITPAATNPVFTERGLWNTFRTCGRDDQQGGIAGKYLADHFKDAKVAIIHDKTPYGQGLADETK 159 (356)
T ss_dssp HHHHHHHHHHHTTTCEEEESSCCCGGGGSSCCTTEEESSCCHHHHHHHHHHHHHHHCTTCCEEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCeEEecCCCCcHhhcCCCCcEEEecCChHHHHHHHHHHHHHhcCCCEEEEEeCCChHHHHHHHHHH
Confidence 99999999999999999999999998888778999999999999999999965 66799999999999999999999999
Q ss_pred HHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcChhhHHHHHHHHHhCCCCCCCeEEEEeCCCccccCC
Q 002267 205 DALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIATDWLPSVLDS 284 (945)
Q Consensus 205 ~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~~ 284 (945)
+++++.|++++....++ .+..++...++++++.++|+|++++....+..++++++++|+.. .|+.++++.... .
T Consensus 160 ~~l~~~g~~v~~~~~~~--~~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~~~~~~-~ 233 (356)
T 3ipc_A 160 KAANAAGVTEVMYEGVN--VGDKDFSALISKMKEAGVSIIYWGGLHTEAGLIIRQAADQGLKA---KLVSGDGIVSNE-L 233 (356)
T ss_dssp HHHHHTTCCCSEEEECC--TTCCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHTCCC---EEEECGGGCSHH-H
T ss_pred HHHHHcCCEEEEEEeeC--CCCCCHHHHHHHHHhcCCCEEEEccCchHHHHHHHHHHHCCCCC---cEEEeccccCHH-H
Confidence 99999999988777776 45678889999999999999999999999999999999999875 477766543210 0
Q ss_pred CCCCChhHHhhhcceeEEEeecC-CCchhhHHHHHHHhhhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhcCCccccc
Q 002267 285 TEPVDIDTMNLLQGVVALRHHTP-DTDLKKNFISRWKNLKYKENSPSGFNSYALYAYDSVWLVAHALDALLNEGGKFTFS 363 (945)
Q Consensus 285 ~~~~~~~~~~~~~G~~~~~~~~~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~~~~~~~~~~~~ 363 (945)
........+|++...++.+ ..+..++|.++|+++ +..|+.++..+|||++++++|++++..
T Consensus 234 ----~~~~g~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~------~~~p~~~~~~~yda~~~~~~al~~ag~-------- 295 (356)
T 3ipc_A 234 ----ASIAGDAVEGTLNTFGPDPTLRPENKELVEKFKAA------GFNPEAYTLYSYAAMQAIAGAAKAAGS-------- 295 (356)
T ss_dssp ----HHHHGGGGTTCEEEESCCGGGCGGGHHHHHHHHHT------TCCCCTTHHHHHHHHHHHHHHHHHHTC--------
T ss_pred ----HHHhhHHhCCEEEEecCCCCCChhHHHHHHHHHHc------CCCcchhHHHHHHHHHHHHHHHHHhCC--------
Confidence 0122356788888776654 467889999999986 234677999999999999999999621
Q ss_pred CCCCCCCCCCCccccCCccccCchHHHHHHHHhcccccceeeEEEccCCCCCCCcEEEEEeec---cceEEEEEecCC
Q 002267 364 NDPKLHDTNGSMLNLSSLRVFDGGQQFLQTLLRMNFTGLSGEIRFDADKNLVNPAYDVLNIGG---TGSRRIGYWSNY 438 (945)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~sG~v~fd~~g~~~~~~y~i~~~~~---~~~~~Vg~w~~~ 438 (945)
.+++.|.++|++.+|+|++|+++||++|++....+.|+++++ +.|+.+..|.+.
T Consensus 296 ---------------------~~~~~~~~~l~~~~~~g~~G~~~f~~~g~~~~~~~~i~~~~~~~~G~~~~~~~~~~~ 352 (356)
T 3ipc_A 296 ---------------------VEPEKVAEALKKGSFPTALGEISFDEKGDPKLPGYVMYEWKKGPDGKFTYIQQGSHH 352 (356)
T ss_dssp ---------------------CCHHHHHHHHTTCCBCCTTSSBCBCTTSCBCCCCCEEEEEEECTTSSEEEEEC----
T ss_pred ---------------------CCHHHHHHHHHhCCCCCcceeeEECCCCCccCCCeEEEEEEECCCCcEEEEeccccc
Confidence 158999999999999999999999999998878999999995 889999988753
No 22
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=100.00 E-value=4.2e-38 Score=349.99 Aligned_cols=338 Identities=20% Similarity=0.267 Sum_probs=279.9
Q ss_pred CCCceEEEEEEeccC---CccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEc
Q 002267 46 SRPSSVRIGALFTYD---SVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMEN-EVVAAIG 121 (945)
Q Consensus 46 ~~~~~i~IG~l~~l~---~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~-~v~aiiG 121 (945)
.++++|+||+++|+| +..|....+|+++|+|+||++||++ |++|+++++|++++|..+.+.+.+|+++ +|.+|+|
T Consensus 3 ~~~~tIkIG~~~plsG~~a~~G~~~~~g~~lAv~~iN~~GGi~-Gr~ielv~~D~~~~p~~a~~~a~~li~~~~v~~i~g 81 (353)
T 4gnr_A 3 VEEKTIKIGFNFEESGSLAAYGTAEQKGAQLAVDEINAAGGID-GKQIEVVDKDNKSETAEAASVTTNLVTQSKVSAVVG 81 (353)
T ss_dssp ---CEEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHTTCBT-TBEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEC
T ss_pred CCCCeEEEEEEeCCcCchhHhHHHHHHHHHHHHHHHHhcCCCC-CeEEEEEEecCCCCHHHHHHHHHHHHhhCCceEEec
Confidence 356799999999998 4568899999999999999999996 9999999999999999999999999987 7899999
Q ss_pred cCChhHHHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHc-CCeEEEEEEEe-CCcccch
Q 002267 122 PQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYY-GWREVIAIFVD-DDYGRNG 199 (945)
Q Consensus 122 p~~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~-~w~~v~ii~~d-~~~g~~~ 199 (945)
|.+|..+.+++++++++++|+|+++++++.++. .++|+||+.|++..++.+++.++... +++++++++.+ ++||++.
T Consensus 82 ~~~s~~~~a~~~~~~~~~vp~i~~~~~~~~l~~-~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~ 160 (353)
T 4gnr_A 82 PATSGATAAAVANATKAGVPLISPSATQDGLTK-GQDYLFIGTFQDSFQGKIISNYVSEKLNAKKVVLYTDNASDYAKGI 160 (353)
T ss_dssp CCSHHHHHHHHHHHHHTTCCEEESSCCCTTTTT-TCTTEEECSCCHHHHHHHHHHHHHHTSCCSEEEEEEETTCHHHHHH
T ss_pred cccCcccceehhhhhccCcceEeeccccccccc-CCccccccCCCcHHHHHHHHHHHHHhcCCcEEEEEEcCchHHHHHH
Confidence 999999999999999999999999999998875 45899999999999999999988665 44555555554 4588877
Q ss_pred HHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcChhhHHHHHHHHHhCCCCCCCeEEEEeCCCc
Q 002267 200 ISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIATDWLP 279 (945)
Q Consensus 200 ~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~ 279 (945)
.+.+.+ +.|++|+..+.++ .+..|++.++.++++.++|+|++.+.+.++..++++++++|+..+ |+..+++.
T Consensus 161 ~~~~~~---~~g~~vv~~~~~~--~~~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~ 232 (353)
T 4gnr_A 161 AKSFRE---SYKGEIVADETFV--AGDTDFQAALTKMKGKDFDAIVVPGYYNEAGKIVNQARGMGIDKP---IVGGDGFN 232 (353)
T ss_dssp HHHHHH---HCCSEEEEEEEEC--TTCCCCHHHHHHHHTSCCSEEECCSCHHHHHHHHHHHHHTTCCSC---EEECGGGC
T ss_pred HHHHHH---HcCCEEEEEEeeC--CCCCCHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHHHHcCCCCc---EEEecccc
Confidence 776654 4578999988888 567899999999999999999999999999999999999998763 56555433
Q ss_pred cccCCCCCCChhHHhhhcceeEEEeecC---CCchhhHHHHHHHhhhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhc
Q 002267 280 SVLDSTEPVDIDTMNLLQGVVALRHHTP---DTDLKKNFISRWKNLKYKENSPSGFNSYALYAYDSVWLVAHALDALLNE 356 (945)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~---~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~~~~~ 356 (945)
..... .....+..+|++....+.+ .++..++|.++|+++| +..|+.++.++|||++++++|++++
T Consensus 233 ~~~~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~-----g~~p~~~a~~~Yda~~~la~Ai~~a--- 300 (353)
T 4gnr_A 233 GEEFV----QQATAEKASNIYFISGFSTTVEVSAKAKAFLDAYRAKY-----NEEPSTFAALAYDSVHLVANAAKGA--- 300 (353)
T ss_dssp SHHHH----HHHCTTTCCSEEEEESCCSSSSCCHHHHHHHHHHHHHH-----SSCCCHHHHHHHHHHHHHHHHHTTC---
T ss_pred cchhh----hhhhhhhhcCccccccccCCCCCCHHHHHHHHHHHHHh-----CCCCChhHHHHHHHHHHHHHHHhcC---
Confidence 21000 0011245677777765544 3567899999999999 6678999999999999999999752
Q ss_pred CCcccccCCCCCCCCCCCccccCCccccCchHHHHHHHHhc-ccccceeeEEEccCCCCCCCcEEEEEeeccceEEEEE
Q 002267 357 GGKFTFSNDPKLHDTNGSMLNLSSLRVFDGGQQFLQTLLRM-NFTGLSGEIRFDADKNLVNPAYDVLNIGGTGSRRIGY 434 (945)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~f~G~sG~v~fd~~g~~~~~~y~i~~~~~~~~~~Vg~ 434 (945)
+ ++..+.++|+++ +|+|++|+++||+||++. ..+.|+++++++++.+..
T Consensus 301 -~---------------------------~~~~v~~aL~~~~~~~g~~G~i~f~~~g~~~-~~~~i~~v~~Gk~~~~~~ 350 (353)
T 4gnr_A 301 -K---------------------------NSGEIKDNLAXTKDFEGVTGQTSFDADHNTV-KTAYMMTMNNGKVEAAEV 350 (353)
T ss_dssp -S---------------------------SHHHHHHHHHTCCCEEETTEEECCCTTSCCC-CCEEEEEEETTEEEEEEE
T ss_pred -C---------------------------CHHHHHHHHHhcCCCccCceeEEECCCcCCc-CCeEEEEEECCEEEEEEE
Confidence 0 378899999988 599999999999999865 567789999888876644
No 23
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=100.00 E-value=1.1e-37 Score=345.93 Aligned_cols=339 Identities=16% Similarity=0.189 Sum_probs=290.8
Q ss_pred ceEEEEEEeccCCc---cccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCCh
Q 002267 49 SSVRIGALFTYDSV---IGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAIGPQSS 125 (945)
Q Consensus 49 ~~i~IG~l~~l~~~---~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s 125 (945)
++|+||+++|++.. .|.....|+++|+++||++||+ +|++|++++.|+++++..+.+.+.+|++++|.+||||.+|
T Consensus 1 ~~i~IG~~~p~~g~~~~~~~~~~~g~~~a~~~iN~~ggi-~G~~l~l~~~d~~~~~~~~~~~~~~l~~~~v~~iig~~~s 79 (346)
T 1usg_A 1 DDIKVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKGGI-KGDKLVGVEYDDACDPKQAVAVANKIVNDGIKYVIGHLCS 79 (346)
T ss_dssp CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTB-TTBCEEEEEEECTTCHHHHHHHHHHHHHTTCCEEECCSSH
T ss_pred CcEEEEEEeCCCCcchhcCHHHHHHHHHHHHHHHHhCCC-CCeEEEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEcCCCc
Confidence 36999999999743 5778899999999999999998 5999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHH-HHcCCeEEEEEEEeCCcccchHHHHH
Q 002267 126 GIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLV-EYYGWREVIAIFVDDDYGRNGISVLG 204 (945)
Q Consensus 126 ~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l-~~~~w~~v~ii~~d~~~g~~~~~~l~ 204 (945)
..+.+++++++..++|+|++.++++.+++..+|++||+.|++..++.++++++ +++||++|++|+.++.||....+.++
T Consensus 80 ~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~i~~i~~~~~~~~~~~~~~~ 159 (346)
T 1usg_A 80 SSTQPASDIYEDEGILMISPGATNPELTQRGYQHIMRTAGLDSSQGPTAAKYILETVKPQRIAIIHDKQQYGEGLARSVQ 159 (346)
T ss_dssp HHHHHHHHHHHHHTCEEEECCCCCGGGGSSCCSSEEECSCCGGGHHHHHHHHHHHTTCCSSEEEEECSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCeEEeeCCCChHHhcCCCCcEEeccCChHHHHHHHHHHHHHhcCCCeEEEEECCCchHHHHHHHHH
Confidence 99999999999999999999888887876568999999999999999999987 56799999999999999999999999
Q ss_pred HHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcChhhHHHHHHHHHhCCCCCCCeEEEEeCCCccccCC
Q 002267 205 DALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIATDWLPSVLDS 284 (945)
Q Consensus 205 ~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~~ 284 (945)
+++++.|+++.....++ .+..++...++++++.++|+|++.+....+..++++++++|+..+ |+.++.+... ..
T Consensus 160 ~~l~~~g~~v~~~~~~~--~~~~d~~~~~~~l~~~~~d~i~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~~~~~-~~ 233 (346)
T 1usg_A 160 DGLKAANANVVFFDGIT--AGEKDFSALIARLKKENIDFVYYGGYYPEMGQMLRQARSVGLKTQ---FMGPEGVGNA-SL 233 (346)
T ss_dssp HHHHHTTCCEEEEEECC--TTCCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCE---EEECGGGCCT-TH
T ss_pred HHHHHcCCEEEEEeccC--CCCcCHHHHHHHHHhcCCCEEEEcCcchHHHHHHHHHHHcCCCCe---EEecCCCCcH-HH
Confidence 99999999998776666 345677788999998899999999988889999999999998763 8877654321 00
Q ss_pred CCCCChhHHhhhcceeEEEeec-CCCchhhHHHHHHHhhhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhcCCccccc
Q 002267 285 TEPVDIDTMNLLQGVVALRHHT-PDTDLKKNFISRWKNLKYKENSPSGFNSYALYAYDSVWLVAHALDALLNEGGKFTFS 363 (945)
Q Consensus 285 ~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~~~~~~~~~~~~ 363 (945)
........+|++.+.++. ++.+..++|.++|++++ +..++.++..+|||++++++|++++..
T Consensus 234 ----~~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~-----~~~~~~~~~~~yda~~~~~~al~~~g~-------- 296 (346)
T 1usg_A 234 ----SNIAGDAAEGMLVTMPKRYDQDPANQGIVDALKADK-----KDPSGPYVWITYAAVQSLATALERTGS-------- 296 (346)
T ss_dssp ----HHHHGGGGTTCEEEECCCGGGSGGGHHHHHHHHHTT-----CCCCCHHHHHHHHHHHHHHHHHHHHCC--------
T ss_pred ----HHHhhHhhCCeEEecCCCCCCCHHHHHHHHHHHHHh-----CCCCchhHHHHHHHHHHHHHHHHHhCC--------
Confidence 012234678988877653 35678899999999987 456788999999999999999999621
Q ss_pred CCCCCCCCCCCccccCCccccCchHHHHHHHHhcccccceeeEEEccCCCCCCCcEEEEEee-ccceEEE
Q 002267 364 NDPKLHDTNGSMLNLSSLRVFDGGQQFLQTLLRMNFTGLSGEIRFDADKNLVNPAYDVLNIG-GTGSRRI 432 (945)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~sG~v~fd~~g~~~~~~y~i~~~~-~~~~~~V 432 (945)
. +++.|.++|++.+|+|++|+++||++|++....|.|++++ ++.++.|
T Consensus 297 --------------------~-~~~~l~~~l~~~~~~g~~G~i~f~~~g~~~~~~~~i~~~~~~G~~~~~ 345 (346)
T 1usg_A 297 --------------------D-EPLALVKDLKANGANTVIGPLNWDEKGDLKGFDFGVFQWHADGSSTKA 345 (346)
T ss_dssp --------------------C-CHHHHHHHHHHHCEEETTEEECBCTTSSBSSCCCEEEEECTTSCEEEC
T ss_pred --------------------C-CHHHHHHHHHhCCCccceeeeEECCCCCccCCceEEEEEecCCEEEec
Confidence 0 4889999999999999999999999999877889999998 7776654
No 24
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=100.00 E-value=1.6e-37 Score=346.16 Aligned_cols=344 Identities=15% Similarity=0.171 Sum_probs=296.3
Q ss_pred CceEEEEEEeccCC---ccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHH-hcCcEEEEccC
Q 002267 48 PSSVRIGALFTYDS---VIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLM-ENEVVAAIGPQ 123 (945)
Q Consensus 48 ~~~i~IG~l~~l~~---~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li-~~~v~aiiGp~ 123 (945)
.++|+||+++|++. ..|.....|+++|++++|++||++ |+++++++.|+++++..+.+.+.+|+ +++|.+||||.
T Consensus 2 ~~~i~IG~i~p~sg~~~~~~~~~~~g~~~a~~~~n~~ggi~-G~~~~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~ 80 (358)
T 3hut_A 2 SLALLLGYELPLTGANAAYGRVFQEAARLQLDRFNAAGGVG-GRPVDILYADSRDDADQARTIARAFVDDPRVVGVLGDF 80 (358)
T ss_dssp -CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBT-TBCEEEEEEECTTCHHHHHHHHHHHHHCTTEEEEEECS
T ss_pred CccEEEEEEeccCCchhhcCHHHHHHHHHHHHHHHhhCCCC-CeEEEEEEecCCCCHHHHHHHHHHHhccCCcEEEEcCC
Confidence 35899999999973 467889999999999999999997 99999999999999999999999999 66999999999
Q ss_pred ChhHHHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEeCCcccchHHHH
Q 002267 124 SSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDDYGRNGISVL 203 (945)
Q Consensus 124 ~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l 203 (945)
+|..+.+++++++..++|+|++.++++.+++.. |++||+.|++..++.++++++...||++|++|+.++.+|+...+.+
T Consensus 81 ~s~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~~ 159 (358)
T 3hut_A 81 SSTVSMAAGSIYGKEGMPQLSPTAAHPDYIKIS-PWQFRAITTPAFEGPNNAAWMIGDGFTSVAVIGVTTDWGLSSAQAF 159 (358)
T ss_dssp SHHHHHHHHHHHHHHTCCEEESSCCCGGGTTSC-TTEEESSCCGGGHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHCCCcEEecCCCCcccccCC-CeEEEecCChHHHHHHHHHHHHHcCCCEEEEEecCcHHHHHHHHHH
Confidence 999999999999999999999988888887655 9999999999999999999988889999999999999999999999
Q ss_pred HHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcChhhHHHHHHHHHhCCCCCCCeEEEEeCCCccccC
Q 002267 204 GDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIATDWLPSVLD 283 (945)
Q Consensus 204 ~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~ 283 (945)
++++++.|+++.....++ .+..++...++++++.++++|++.+....+..++++++++|+.. .|+.++++....
T Consensus 160 ~~~l~~~g~~v~~~~~~~--~~~~~~~~~~~~l~~~~~d~i~~~~~~~~a~~~~~~~~~~g~~~---p~~~~~~~~~~~- 233 (358)
T 3hut_A 160 RKAFELRGGAVVVNEEVP--PGNRRFDDVIDEIEDEAPQAIYLAMAYEDAAPFLRALRARGSAL---PVYGSSALYSPK- 233 (358)
T ss_dssp HHHHHHTTCEEEEEEEEC--TTCCCCHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHHHTTCCC---CEEECGGGCSHH-
T ss_pred HHHHHHcCCEEEEEEecC--CCCccHHHHHHHHHhcCCCEEEEccCchHHHHHHHHHHHcCCCC---cEEecCcccCHH-
Confidence 999999999998877776 45677888999999889999999999999999999999999865 377776543210
Q ss_pred CCCCCChhHHhhhcceeEEEeecC--CCchhhHHHHHHHhhhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhcCCccc
Q 002267 284 STEPVDIDTMNLLQGVVALRHHTP--DTDLKKNFISRWKNLKYKENSPSGFNSYALYAYDSVWLVAHALDALLNEGGKFT 361 (945)
Q Consensus 284 ~~~~~~~~~~~~~~G~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~~~~~~~~~~ 361 (945)
. .....+..+|++...++.+ +.+..++|.++|++++ +..++.++..+|||++++++|++++...
T Consensus 234 ~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~-----~~~p~~~~~~~yda~~~~~~al~~ag~~----- 299 (358)
T 3hut_A 234 F----IDLGGPAVEGVRLATAFVLGASDPVVVEFVSAYETLY-----GAIPTLFAAHGYDAVGIMLAAVGRAGPE----- 299 (358)
T ss_dssp H----HHHHGGGGTTCEEEESCCTTCCSHHHHHHHHHHHHHH-----SSCCCHHHHHHHHHHHHHHHHHHHHCTT-----
T ss_pred H----HHHhHHhhCCeEEEeccCCCCCCHHHHHHHHHHHHHH-----CCCCCHHHHHHHHHHHHHHHHHHHhCCC-----
Confidence 0 0122356889988887766 4678999999999998 5578899999999999999999996211
Q ss_pred ccCCCCCCCCCCCccccCCccccCchHH-HHHHHHhc-ccccceeeEEEccCCCCCCCcEEEEEeeccceEEEEEecC
Q 002267 362 FSNDPKLHDTNGSMLNLSSLRVFDGGQQ-FLQTLLRM-NFTGLSGEIRFDADKNLVNPAYDVLNIGGTGSRRIGYWSN 437 (945)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~l~~~-~f~G~sG~v~fd~~g~~~~~~y~i~~~~~~~~~~Vg~w~~ 437 (945)
+++. +.++|+++ +|+|++|+++||++|++....+.|+++++++++.+..+.+
T Consensus 300 ------------------------~~~~~~~~~l~~~~~~~g~~G~~~f~~~g~~~~~~~~i~~~~~G~~~~~~~~~~ 353 (358)
T 3hut_A 300 ------------------------VTRESLRDALAATDRYAGVTGITRFDPETRETTKILTRLVVREGDFRVIDREGH 353 (358)
T ss_dssp ------------------------CCHHHHHHHHHTCCSEEETTEEEEECTTTCCEEECCEEEEEETTEEEEC-----
T ss_pred ------------------------ChHHHHHHHHHhcCCCcCCceeeEECCCCCcCCCceEEEEEECCEEEEeccccc
Confidence 3677 99999999 8999999999999999756789999999888888765544
No 25
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=100.00 E-value=2.4e-37 Score=347.05 Aligned_cols=334 Identities=17% Similarity=0.178 Sum_probs=290.5
Q ss_pred CceEEEEEEeccCC---cc-ccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHh-cCcEEEEcc
Q 002267 48 PSSVRIGALFTYDS---VI-GRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLME-NEVVAAIGP 122 (945)
Q Consensus 48 ~~~i~IG~l~~l~~---~~-g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~-~~v~aiiGp 122 (945)
.++|+||+++|++. .. |.....|+++|++++ ++|++ |++++++++|+++++..+.+.+.+|++ ++|.+||||
T Consensus 2 ~~~i~IG~~~p~sg~~a~~~g~~~~~g~~~A~~~~--~ggi~-G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~~iiG~ 78 (375)
T 3i09_A 2 ADSVKIGFITDMSGLYADIDGQGGLEAIKMAVADF--GGKVN-GKPIEVVYADHQNKADIAASKAREWMDRGGLDLLVGG 78 (375)
T ss_dssp CSSEEEEEEECSSSTTTTTSHHHHHHHHHHHHHHH--TSEET-TEEEEEEEEECTTCHHHHHHHHHHHHHHSCEEEEEEC
T ss_pred CCCeEEEEEeCCCcccccccCHHHHHHHHHHHHHh--CCCCC-CeEEEEEEecCCCCHHHHHHHHHHHHhhCCCEEEECC
Confidence 36899999999983 34 778999999999999 46774 899999999999999999999999998 699999999
Q ss_pred CChhHHHHHHHhhcccCccEEecccCCCCCCC-CCCCceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEeCCcccchHH
Q 002267 123 QSSGIAHVISHVVNELNVPLLSFGATDPTLTS-LQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDDYGRNGIS 201 (945)
Q Consensus 123 ~~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~-~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~ 201 (945)
.+|..+.+++++++.+++|+|+++++++.+++ ..+||+||+.+++..++.++++++.++||++|++|+.|++||+...+
T Consensus 79 ~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g~~~~~ 158 (375)
T 3i09_A 79 TNSATALSMNQVAAEKKKVYINIGAGADTLTNEQCTPYTVHYAYDTMALAKGTGSAVVKQGGKTWFFLTADYAFGKALEK 158 (375)
T ss_dssp SCHHHHHHHHHHHHHHTCEEEECSCCCGGGGTTTCCTTEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCceEEEeCCCchhhhcccCCCcEEEeeCChHHHHHHHHHHHHHcCCceEEEEecccHHHHHHHH
Confidence 99999999999999999999999999888887 46899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcChhhHHHHHHHHHhCCCCCCCeEEEEeCCCccc
Q 002267 202 VLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIATDWLPSV 281 (945)
Q Consensus 202 ~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~ 281 (945)
.+++.+++.|++|+....++ .+..|+...+.++++.++|+|++.+...++..++++++++|+..+. .++..+++...
T Consensus 159 ~~~~~~~~~G~~v~~~~~~~--~~~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~-~i~g~~~~~~~ 235 (375)
T 3i09_A 159 NTADVVKANGGKVLGEVRHP--LSASDFSSFLLQAQSSKAQILGLANAGGDTVNAIKAAKEFGITKTM-KLAALLMFIND 235 (375)
T ss_dssp HHHHHHHHTTCEEEEEEEEC--TTCSCCHHHHHHHHHTCCSEEEEECCHHHHHHHHHHHHHTTGGGTC-EEEESSCCHHH
T ss_pred HHHHHHHHcCCEEeeeeeCC--CCCccHHHHHHHHHhCCCCEEEEecCchhHHHHHHHHHHcCCCcCc-eEEecccchhh
Confidence 99999999999999888777 4567899999999999999999999999999999999999998766 44544433221
Q ss_pred cCCCCCCChhHHhhhcceeEEEeecCC-CchhhHHHHHHHhhhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhcCCcc
Q 002267 282 LDSTEPVDIDTMNLLQGVVALRHHTPD-TDLKKNFISRWKNLKYKENSPSGFNSYALYAYDSVWLVAHALDALLNEGGKF 360 (945)
Q Consensus 282 ~~~~~~~~~~~~~~~~G~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~~~~~~~~~ 360 (945)
+. ....+..+|++...++.++ ++..++|.++|+++| +..|+.++..+|||++++++|++++..
T Consensus 236 ~~------~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~-----g~~p~~~a~~~Yda~~~~~~Al~~ag~----- 299 (375)
T 3i09_A 236 VH------ALGLETTQGLVLTDSWYWNRDQASRQWAQRYFAKM-----KKMPSSLQAADYSSVTTYLKAVQAAGS----- 299 (375)
T ss_dssp HH------HHCHHHHTTCEEEESCCTTSSHHHHHHHHHHHHHH-----SSCCCHHHHHHHHHHHHHHHHHHHHTS-----
T ss_pred Hh------hhChhhhCCeeeeeeecCCCCHHHHHHHHHHHHHH-----CCCCcHHHHHHHHHHHHHHHHHHHhCC-----
Confidence 11 1112467898888776654 578899999999998 667889999999999999999999621
Q ss_pred cccCCCCCCCCCCCccccCCccccCchHHHHHHHHhcccccceeeEEEccCCCCCCCcEEEEEeeccc
Q 002267 361 TFSNDPKLHDTNGSMLNLSSLRVFDGGQQFLQTLLRMNFTGLSGEIRFDADKNLVNPAYDVLNIGGTG 428 (945)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~sG~v~fd~~g~~~~~~y~i~~~~~~~ 428 (945)
.+++.|.++|++++|+|++|.++||+||++. ..+.|+++++++
T Consensus 300 ------------------------~~~~~l~~aL~~~~~~~~~G~~~f~~~g~~~-~~~~i~~v~~~~ 342 (375)
T 3i09_A 300 ------------------------TDSDKVMAQLKKMKIDDFYAKGYIRTDGSMI-HDMYLMEVKKPS 342 (375)
T ss_dssp ------------------------CCHHHHHHHHTTSCEESSSCEEEECTTSBEE-CCEEEEEECCGG
T ss_pred ------------------------CCHHHHHHHHhCCCccCCCCceEECCCCCee-eeeEEEEEeccc
Confidence 1589999999999999999999999999875 567899987643
No 26
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=100.00 E-value=7.7e-38 Score=353.27 Aligned_cols=352 Identities=13% Similarity=0.063 Sum_probs=299.9
Q ss_pred CceEEEEEEeccC---CccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEccC
Q 002267 48 PSSVRIGALFTYD---SVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMEN-EVVAAIGPQ 123 (945)
Q Consensus 48 ~~~i~IG~l~~l~---~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~-~v~aiiGp~ 123 (945)
.++|+||+++|++ +..|.....|+++|++++|++||++ |++++++++|+++++..+.+.+.+|+++ +|.+||| .
T Consensus 5 ~~~i~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~-G~~i~l~~~D~~~~~~~~~~~~~~li~~~~V~~iig-~ 82 (392)
T 3lkb_A 5 QQQVTLFWSGAITGPTSDAGAPYGAAVEDYCKWANERKLVP-GVVFNCVVRDDQYNNANTQRFFEEAVDRFKIPVFLS-Y 82 (392)
T ss_dssp CEEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHTSST-TEEEEEEEEECTTCHHHHHHHHHHHHHTTCCSCEEE-C
T ss_pred CCceEEEEEecccCchhhcChhHHHHHHHHHHHHHhcCCcC-CeEeEEEEecCCCCHHHHHHHHHHHHhhcCcEEEEe-C
Confidence 5789999999998 3467889999999999999999996 8999999999999999999999999997 9999999 6
Q ss_pred ChhHHHHHHHhhcccCccEEecccCCCCCCC-CCCCceEEecCChhHHHHHHHHHHHH-cCCeEEEEEEEeCCcccchHH
Q 002267 124 SSGIAHVISHVVNELNVPLLSFGATDPTLTS-LQYPYFLRTTQSDYYQMHAVADLVEY-YGWREVIAIFVDDDYGRNGIS 201 (945)
Q Consensus 124 ~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~-~~~p~~~r~~p~d~~~~~ai~~~l~~-~~w~~v~ii~~d~~~g~~~~~ 201 (945)
+|..+.+++++++..+||+|+++++++ +.+ ..+|++||+.|++..++.++++++.. +||++|++|+.+++||+...+
T Consensus 83 ~s~~~~~~~~~~~~~~iP~i~~~~~~~-~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~g~~~~~ 161 (392)
T 3lkb_A 83 ATGANLQLKPLIQELRIPTIPASMHIE-LIDPPNNDYIFLPTTSYSEQVVALLEYIAREKKGAKVALVVHPSPFGRAPVE 161 (392)
T ss_dssp CHHHHHHHHHHHHHHTCCEEESCCCGG-GGSSSSCTTBCEEECCHHHHHHHHHHHHHHHCTTCEEEEEECSSHHHHTTHH
T ss_pred CcHHHHHHHHHHHhCCceEEecccChh-hccCCCCCceEecCCChHHHHHHHHHHHHHhCCCCEEEEEEeCCchhhhHHH
Confidence 899999999999999999999866544 444 56899999999999999999998866 699999999999999999999
Q ss_pred HHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcChhhHHHHHHHHHhCCCCCCCeEEEEeCCCccc
Q 002267 202 VLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIATDWLPSV 281 (945)
Q Consensus 202 ~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~ 281 (945)
.+++++++.|++++....++ .+..|+...+.++++.++|+|++++....+..++++++++|+.. .|+.++++...
T Consensus 162 ~~~~~l~~~G~~v~~~~~~~--~~~~d~~~~~~~l~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~~~~~ 236 (392)
T 3lkb_A 162 DARKAARELGLQIVDVQEVG--SGNLDNTALLKRFEQAGVEYVVHQNVAGPVANILKDAKRLGLKM---RHLGAHYTGGP 236 (392)
T ss_dssp HHHHHHHHHTCEEEEEEECC--TTCCCCHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCC---EEEECGGGCSH
T ss_pred HHHHHHHHcCCeEEEEEeeC--CCCcCHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCc---eEEEecCcccH
Confidence 99999999999999888777 45678899999999999999999999999999999999999865 47766544321
Q ss_pred cCCCCCCChhHHhhhcceeEEEeecCC--CchhhHHHHHHHhhhcCCCCCCCCchh----HHHHHHHHHHHHHHHHHHHh
Q 002267 282 LDSTEPVDIDTMNLLQGVVALRHHTPD--TDLKKNFISRWKNLKYKENSPSGFNSY----ALYAYDSVWLVAHALDALLN 355 (945)
Q Consensus 282 ~~~~~~~~~~~~~~~~G~~~~~~~~~~--~~~~~~f~~~~~~~~~~~~~~~~~~~~----~~~~YDav~~la~Al~~~~~ 355 (945)
+. ........+|++...++.+. .+..++|.++|+++| +..++.+ +..+|||++++++|++++..
T Consensus 237 -~~----~~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~-----~~~p~~~~~~~~~~~yda~~~~~~al~~ag~ 306 (392)
T 3lkb_A 237 -DL----IALAGDAAEGFLWATSFYMAHEDTPGIRLQKEIGRKY-----GRPENFIESVNYTNGMLAAAIAVEAIRRAQE 306 (392)
T ss_dssp -HH----HHHHGGGGTTCEEEESBCCTTSCCHHHHHHHHHHHHT-----TCCHHHHTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HH----HHhhhhhhcCeEEEEeecCCCCCchhHHHHHHHHHHh-----CCCcccccchhHHHHHHHHHHHHHHHHHhhc
Confidence 00 01223568899888876443 456789999999998 4455444 78999999999999999865
Q ss_pred cCCcccccCCCCCCCCCCCccccCCccccCchHHHHHHHHhcc----cc-------cceeeEEEccCCCCCCCcEEEEEe
Q 002267 356 EGGKFTFSNDPKLHDTNGSMLNLSSLRVFDGGQQFLQTLLRMN----FT-------GLSGEIRFDADKNLVNPAYDVLNI 424 (945)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----f~-------G~sG~v~fd~~g~~~~~~y~i~~~ 424 (945)
.++. .+++.|.++|++++ |+ |++|+++|+++|++....+.|+++
T Consensus 307 ~~~~-------------------------~~~~~v~~aL~~~~~~~~~~~~~~~~~G~~G~i~f~~~~~~~~~~~~i~~~ 361 (392)
T 3lkb_A 307 RFKR-------------------------ITNETVYQAIVGMNGPNAFKPGFAVSTKQGVEIDFTKSEHTGAEGLRILEA 361 (392)
T ss_dssp HHSS-------------------------CCHHHHHHHHHTCCGGGCBCCSSBCCCSSSCSBCCCSSCCEEECCBEEEEE
T ss_pred cCCC-------------------------CCHHHHHHHHHhcCCCcCcccccccccccceeeEeCCCCcCCcccEEEEEE
Confidence 3211 15899999999997 98 999999999988876678999999
Q ss_pred eccceEEEEEecCCCCcc
Q 002267 425 GGTGSRRIGYWSNYSGLS 442 (945)
Q Consensus 425 ~~~~~~~Vg~w~~~~gl~ 442 (945)
++++++.|+.|....++.
T Consensus 362 ~~g~~~~v~~w~~~~~~~ 379 (392)
T 3lkb_A 362 KGGRFVPVTEPFTSALFR 379 (392)
T ss_dssp ETTEEEECSCCBCCHHHH
T ss_pred eCCEEEEeccccchhHHH
Confidence 999999999998766554
No 27
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=100.00 E-value=3.1e-37 Score=346.47 Aligned_cols=335 Identities=16% Similarity=0.154 Sum_probs=288.1
Q ss_pred CCceEEEEEEeccCC---cc-ccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHh-cCcEEEEc
Q 002267 47 RPSSVRIGALFTYDS---VI-GRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLME-NEVVAAIG 121 (945)
Q Consensus 47 ~~~~i~IG~l~~l~~---~~-g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~-~~v~aiiG 121 (945)
..++|+||+++|++. .. |.....|+++|++++ ++|++ |++++++++|+++++..+.+.+.+|++ ++|.+|||
T Consensus 3 ~~~~i~IG~~~p~sg~~a~~~g~~~~~g~~~a~~~i--~ggi~-G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~~iiG 79 (379)
T 3n0w_A 3 STGQVTLGVLTDMSSVYADSAGKGSVAAVQLAIEDV--GGKAL-GQPVKLVSADYQMKTDVALSIAREWFDRDGVDAIFD 79 (379)
T ss_dssp ---CCEEEEEECSSSTTTTTSHHHHHHHHHHHHHHT--TTEET-TEECEEEEEECTTCHHHHHHHHHHHHHHSCCCEEEE
T ss_pred CCCcEEEEEEeCCccccccccCHHHHHHHHHHHHHh--cCCCC-CeEEEEEEeCCCCCHHHHHHHHHHHHHhCCceEEEc
Confidence 356899999999983 34 788999999999999 46774 899999999999999999999999998 69999999
Q ss_pred cCChhHHHHHHHhhcccCccEEecccCCCCCCC-CCCCceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEeCCcccchH
Q 002267 122 PQSSGIAHVISHVVNELNVPLLSFGATDPTLTS-LQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDDYGRNGI 200 (945)
Q Consensus 122 p~~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~-~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~ 200 (945)
|.+|..+.+++++++.+++|+|++.++++.+++ ..+||+||+.+++..++.++++++.++||++|++|+.|++||+...
T Consensus 80 ~~~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~l~~~g~~~vaii~~~~~~g~~~~ 159 (379)
T 3n0w_A 80 VVNSGTALAINNLVKDKKKLAFITAAAADQIGGTECNGYGIGFLYNFTSIVKTVVQAQLAKGYKTWFLMLPDAAYGDLMN 159 (379)
T ss_dssp CCCHHHHHHHHHHHHHHTCEEEECSCCCTTTTTTTCCSSEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCceEEEcCCCchhhhcccCCCcEEEEeCChHHHHHHHHHHHHHcCCcEEEEEecccchhHHHH
Confidence 999999999999999999999999999998887 4689999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcChhhHHHHHHHHHhCCCCCCCeEEEEeCC-Cc
Q 002267 201 SVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIATDW-LP 279 (945)
Q Consensus 201 ~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~-~~ 279 (945)
+.+++.+++.|++|+....++ .+..|+...+.++++.++|+|++.+.+.++..++++++++|+..+.+ ++.+.+ +.
T Consensus 160 ~~~~~~~~~~G~~v~~~~~~~--~~~~d~~~~l~~i~~~~~d~v~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~ 236 (379)
T 3n0w_A 160 AAIRRELTAGGGQIVGSVRFP--FETQDFSSYLLQAKASGAQLIVSTSGGAANINIMKQAREFGLPSKTQ-KVGGMIDIL 236 (379)
T ss_dssp HHHHHHHHHHTCEEEEEEEEC--TTCCCCHHHHHHHHHHTCSEEEECCCHHHHHHHHHHHHHTTCSCSSC-EEECCBCCH
T ss_pred HHHHHHHHHcCCEEEEEEeCC--CCCCCHHHHHHHHHHCCCCEEEEecccchHHHHHHHHHHcCCCCCCc-EEEecccch
Confidence 999999999999999888877 45678999999999999999999999999999999999999987654 344333 22
Q ss_pred cccCCCCCCChhHHhhhcceeEEEeecCC-CchhhHHHHHHHhhhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhcCC
Q 002267 280 SVLDSTEPVDIDTMNLLQGVVALRHHTPD-TDLKKNFISRWKNLKYKENSPSGFNSYALYAYDSVWLVAHALDALLNEGG 358 (945)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~~~~~~~ 358 (945)
..+. ....+..+|++...++.++ ++..++|.++|+++| +..|+.++..+|||++++++|++++..
T Consensus 237 ~~~~------~~~~~~~~g~~~~~~~~~~~~~~~~~f~~~~~~~~-----g~~p~~~~~~~Yda~~~~~~Al~~ag~--- 302 (379)
T 3n0w_A 237 TDVK------SAGLRVMQGQEYATSFYWNMDDRTRAFAKRFYAKM-----GKMPTNNQAGGYSAALQYLKAVNAIGS--- 302 (379)
T ss_dssp HHHH------HHCHHHHTTCEEEESCCTTSSHHHHHHHHHHHHHH-----SSCCCHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHH------hhCHHhhCCeEEEeeecCCCCHHHHHHHHHHHHHH-----CCCCChHHHHHHHHHHHHHHHHHHhCC---
Confidence 1111 1112567899888776654 578899999999998 567899999999999999999999621
Q ss_pred cccccCCCCCCCCCCCccccCCccccCchHHHHHHHHhcccccceee-EEEccCCCCCCCcEEEEEeeccc
Q 002267 359 KFTFSNDPKLHDTNGSMLNLSSLRVFDGGQQFLQTLLRMNFTGLSGE-IRFDADKNLVNPAYDVLNIGGTG 428 (945)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~sG~-v~fd~~g~~~~~~y~i~~~~~~~ 428 (945)
.+++.|.++|++++|+|+.|. ++|++||++. ..+.|+++++++
T Consensus 303 --------------------------~~~~~v~~aL~~~~~~~~~G~~~~f~~~g~~~-~~~~i~~~~~~~ 346 (379)
T 3n0w_A 303 --------------------------KDPQKVFAYLKTIKFDDAVTRHGTLRPGGRLV-RDMYLVRAKKPE 346 (379)
T ss_dssp --------------------------CCHHHHHHHHTTCCBCSSSCCSBEECTTSBEE-CCEEEEEECCGG
T ss_pred --------------------------CCHHHHHHHHhcCCccccCCCceeECCCCCcc-cceEEEEEEchh
Confidence 158999999999999999985 9999999864 678899998644
No 28
>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}
Probab=100.00 E-value=7.2e-37 Score=344.97 Aligned_cols=347 Identities=13% Similarity=0.158 Sum_probs=291.6
Q ss_pred CceEEEEEEeccCC---ccccchHHHHHHHHHHHhcCCCCC-CCc--EEEEEEecCCCChHHHHHHHHHHH-hcCcEEEE
Q 002267 48 PSSVRIGALFTYDS---VIGRAAGPAIAAAVDDVNSDPSIL-PGT--TLNFVIRDTNCSGFVGTMEALQLM-ENEVVAAI 120 (945)
Q Consensus 48 ~~~i~IG~l~~l~~---~~g~~~~~a~~~Ave~iN~~~~il-~g~--~l~l~~~D~~~~~~~a~~~a~~li-~~~v~aii 120 (945)
.++|+||+++|++. ..|.....|+++|+++||++||++ +|+ +|+++++|+++++..+.+.+.+|+ +++|.+||
T Consensus 2 ~~~i~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~~~G~~~~l~l~~~D~~~~~~~a~~~~~~li~~~~V~~ii 81 (391)
T 3eaf_A 2 SLTINVGLLVDETGPTSDVGKGYSLGAELAFKYFNEKGIYTKDGVRVNINYIKRDYAYNPTTAEEYYREFRDRYGVIAII 81 (391)
T ss_dssp CEEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHCEECTTCCEEEEEEEEEECTTCHHHHHHHHHHHHHTTCCSEEE
T ss_pred CccEEEEEEEcCCCchhhhhHHHHHHHHHHHHHHHHcCCCccCCeEEEEEEEEeCCCCCHHHHHHHHHHHHhhcCcEEEE
Confidence 36899999999984 467889999999999999999985 699 999999999999999999999999 56999999
Q ss_pred ccCChhHHHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHH-cCCeEEEEEEE-eCCcccc
Q 002267 121 GPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEY-YGWREVIAIFV-DDDYGRN 198 (945)
Q Consensus 121 Gp~~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~-~~w~~v~ii~~-d~~~g~~ 198 (945)
| .+|..+.+++++++..+||+|+++++++ ++ .+|++||+.|++..++.++++++.+ +||++|++|+. |++||+.
T Consensus 82 G-~~s~~~~a~~~~~~~~~iP~i~~~~~~~-~~--~~~~~f~~~~~~~~~~~~~~~~l~~~~g~~~iaii~~~~~~~g~~ 157 (391)
T 3eaf_A 82 G-WGTADTEKLSDQVDTDKITYISASYSAK-LL--VKPFNFYPAPDYSTQACSGLAFLASEFGQGKLALAYDSKVAYSRS 157 (391)
T ss_dssp E-CCHHHHHHHHHHHHHHTCEEEESCCCGG-GT--TSTTEECSSCCHHHHHHHHHHHHHHHHCSEEEEEEECTTCHHHHT
T ss_pred E-cCcHHHHHHHHHHhhcCCeEEecccchh-hc--CCCcEEEeCCCHHHHHHHHHHHHHHhcCCCEEEEEEecCChhHHH
Confidence 9 6899999999999999999999776654 43 6799999999999999999998866 79999999999 9999999
Q ss_pred hHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHh--hccCCceEEEEEcChhhHHHHHHHHHhCCCCCCCeEEEEeC
Q 002267 199 GISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVG--ANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIATD 276 (945)
Q Consensus 199 ~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~--l~~~~~~vivl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~ 276 (945)
..+.+++++++.|++|+....++ .+..|+...+.+ |++.++|+|++.+....+..++++++++|+.. .|+.++
T Consensus 158 ~~~~~~~~l~~~G~~v~~~~~~~--~~~~d~~~~~~~~~l~~~~~dav~~~~~~~~~~~~~~~~~~~g~~~---~~~~~~ 232 (391)
T 3eaf_A 158 PIGAIKKAAPSLGLQVVGDYDLP--LRATEADAERIAREMLAADPDYVWCGNTISSCSLLGRAMAKVGLDA---FLLTNV 232 (391)
T ss_dssp THHHHHHHTGGGTEEEEEEEECC--TTCCHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHHHHHTCCC---EEEECG
T ss_pred HHHHHHHHHHHcCCceeeeeccC--CCCcCHHHHHHHHHHHHcCCCEEEEecCcHHHHHHHHHHHHCCCCc---eEEEec
Confidence 99999999999999999888887 567789999999 99999999999999999999999999999865 356554
Q ss_pred CCccccCCCCCCChhHHhhhcc-eeEEEeec-----CCCchhhHHHHHHHhhhcCCCCCCCC--chhHHHHHHHHHHHHH
Q 002267 277 WLPSVLDSTEPVDIDTMNLLQG-VVALRHHT-----PDTDLKKNFISRWKNLKYKENSPSGF--NSYALYAYDSVWLVAH 348 (945)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~G-~~~~~~~~-----~~~~~~~~f~~~~~~~~~~~~~~~~~--~~~~~~~YDav~~la~ 348 (945)
+.... +. ........+| ++...++. ++.+. .+|.++|+++| +...| +.++..+|||++++++
T Consensus 233 ~~~~~-~~----~~~~g~~~~g~~~~~~~~~~~~~~~~~~~-~~f~~~~~~~~----~~~~p~~~~~~~~~yda~~~l~~ 302 (391)
T 3eaf_A 233 WGFDE-RS----PQLIGEGGYGKVFGISPFIYPMFGQDVEG-IQTIFEAARMN----GVSEDQINLRVVQGFVNVWLLIK 302 (391)
T ss_dssp GGCST-TH----HHHHCGGGTTSEEEEESBCCGGGCTTCHH-HHHHHHHHHHT----TCCGGGCCHHHHHHHHHHHHHHH
T ss_pred cCCCH-HH----HHhhhhhccCcEEEEEEecCcccCCCCch-hHHHHHHHHHh----CCCCcccccHHHHHHHHHHHHHH
Confidence 43211 00 0122356889 87777665 23444 68999999998 21344 4899999999999999
Q ss_pred HHHHHHhcC-CcccccCCCCCCCCCCCccccCCccccCchHHHHHHHHhcccc--ccee-eEEEccCCCCCCCcEEEEEe
Q 002267 349 ALDALLNEG-GKFTFSNDPKLHDTNGSMLNLSSLRVFDGGQQFLQTLLRMNFT--GLSG-EIRFDADKNLVNPAYDVLNI 424 (945)
Q Consensus 349 Al~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~--G~sG-~v~fd~~g~~~~~~y~i~~~ 424 (945)
|++++...+ .+ .+++.|.++|++.+|+ |++| +++||+++++....+.|+++
T Consensus 303 Al~~a~~~g~~~-------------------------~~~~~v~~aL~~~~~~~~G~~G~~i~f~~~~~~~~~~~~i~~~ 357 (391)
T 3eaf_A 303 AIESVTSQDLQE-------------------------RGGEALKEALEANTFDLGGITADTIDYEPGFHLAYRKVFIIKL 357 (391)
T ss_dssp HHTTSCHHHHHH-------------------------HTHHHHHHHHHHCCBCSTTCBSSCBCCBTTBCCCCCCEEEEEE
T ss_pred HHHHHHhcCCCC-------------------------CCHHHHHHHHHhCCCCCCCccccceeeCCCCCCcceEEEEEEE
Confidence 999851110 01 1588999999998898 9999 99999876666788999999
Q ss_pred -eccceEEEEEecCC
Q 002267 425 -GGTGSRRIGYWSNY 438 (945)
Q Consensus 425 -~~~~~~~Vg~w~~~ 438 (945)
+++.++.|+.|...
T Consensus 358 ~~~G~~~~v~~~~~~ 372 (391)
T 3eaf_A 358 GENGELQLMGKFEAP 372 (391)
T ss_dssp CTTSSEEEEEEECCC
T ss_pred ecCCEEEEeeeecCc
Confidence 78899999999754
No 29
>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B
Probab=100.00 E-value=1.9e-37 Score=347.38 Aligned_cols=331 Identities=11% Similarity=0.140 Sum_probs=274.0
Q ss_pred ceEEEEEEeccC---CccccchHHHHHHHHHHHhc-CCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEccC
Q 002267 49 SSVRIGALFTYD---SVIGRAAGPAIAAAVDDVNS-DPSILPGTTLNFVIRDTNCSGFVGTMEALQLMEN-EVVAAIGPQ 123 (945)
Q Consensus 49 ~~i~IG~l~~l~---~~~g~~~~~a~~~Ave~iN~-~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~-~v~aiiGp~ 123 (945)
++|+||+++|++ +..|.....|+++|++++|+ .+|+ .|++|+++++|++++|..+...+.+|+++ +|.+||||.
T Consensus 3 ~~i~IG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~~ggi-~G~~i~l~~~D~~~~~~~a~~~~~~li~~~~v~aiiG~~ 81 (374)
T 3n0x_A 3 DDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTL-DGRKIVVITKDDQSKPDLSKAALAEAYQDDGADIAIGTS 81 (374)
T ss_dssp -CEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHTTTCCEE-TTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEECS
T ss_pred CCEEEEEecCCCCchhhhCHHHHHHHHHHHHHHhccCCCc-CCEEEEEEEecCCCCHHHHHHHHHHHHHhCCceEEEcCC
Confidence 589999999999 44688999999999999998 6777 49999999999999999999999999985 999999999
Q ss_pred ChhHHHHHHHhhcccCccEEecccCCCCCCCC-CCCceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEeCCcccchHHH
Q 002267 124 SSGIAHVISHVVNELNVPLLSFGATDPTLTSL-QYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDDYGRNGISV 202 (945)
Q Consensus 124 ~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~~-~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~ 202 (945)
+|..+.+++++++.+++|+|++.++++.+++. .+||+||+.|++..++.+++.++++++| +|++|+.|++||+...+.
T Consensus 82 ~s~~~~a~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~fr~~~~~~~~~~~~~~~~~~~~~-~v~ii~~~~~~g~~~~~~ 160 (374)
T 3n0x_A 82 SSAAALADLPVAEENKKILIVEPAVADQITGEKWNRYIFRTGRNSSQDAISNAVAIGKQGV-TIATLAQDYAFGRDGVAA 160 (374)
T ss_dssp SHHHHHHHHHHHHHHTCCEEECSCCCGGGGTTTCCTTEEECSCCHHHHHHHHHHHHCCTTE-EEEEEEESSHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCccEEEcCCCchhhhcCCCCCeEEEccCCchhHHHHHHHHHhccCC-EEEEEeCCchHHHHHHHH
Confidence 99999999999999999999988888888874 5899999999999999999988888898 799999999999999999
Q ss_pred HHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCC-----ceEEEEEcChhhHHHHHHHHHhCCCCCCCeEEEEeCC
Q 002267 203 LGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLME-----SRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIATDW 277 (945)
Q Consensus 203 l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~-----~~vivl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~ 277 (945)
+++.+++.|++|+....++ .+..|++.++++|++.+ +|+|++...+... .+.++.++++...++.++..+.
T Consensus 161 ~~~~~~~~G~~vv~~~~~~--~~~~d~~~~l~~i~~~~~~~~~~d~v~~~~~g~~~--~~~~~~~~~~~~~g~~~~~~~~ 236 (374)
T 3n0x_A 161 FKEALAKTGATLATEEYVP--TTTTDFTAVGQRLFDALKDKPGKKIIWVIWAGGGD--PLTKLQDMDPKRYGIELSTGGN 236 (374)
T ss_dssp HHHHHTTTTCEEEEEEEEC--TTCCCCHHHHHHHHHHHTTCSSEEEEEECCCSSSC--HHHHHHHTCGGGGTEEEEECCC
T ss_pred HHHHHHHcCCEEeeeecCC--CCCccHHHHHHHHHhcCCCCCCCCEEEEEecCCcH--HHHHHHHcchhhcCCeeeeccc
Confidence 9999999999999988887 56788999999999988 9999987433221 2455666666555555554332
Q ss_pred CccccCCCCCCChhHHhhhcceeEEEee---cCCCchhhHHHHHHHhhhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 002267 278 LPSVLDSTEPVDIDTMNLLQGVVALRHH---TPDTDLKKNFISRWKNLKYKENSPSGFNSYALYAYDSVWLVAHALDALL 354 (945)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~---~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~~~ 354 (945)
..... .......|+.++..+ .++++..++|.++|+++| +..|+.++..+|||++++++|++++.
T Consensus 237 ~~~~~--------~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~y~~~~-----g~~p~~~a~~~Yda~~~l~~Al~~ag 303 (374)
T 3n0x_A 237 ILPAL--------AAYKRLPGMEGATYYYYDIPKNPINEWLVTEHQKRF-----NAPPDFFTAGGFSAAMAVVTAVQKAK 303 (374)
T ss_dssp CTTGG--------GGGGGSTTCEEEESCCTTSCCSHHHHHHHHHHHHHH-----SSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchhh--------hhhhhhcCccccceeccCCCCCHHHHHHHHHHHHHH-----CCCCChhHHHHHHHHHHHHHHHHHhC
Confidence 11100 111345666666543 345678899999999998 56789999999999999999999962
Q ss_pred hcCCcccccCCCCCCCCCCCccccCCccccCchHHHHHHHHhcccccceeeEEEccCCCCCCCcEEEEEeecc
Q 002267 355 NEGGKFTFSNDPKLHDTNGSMLNLSSLRVFDGGQQFLQTLLRMNFTGLSGEIRFDADKNLVNPAYDVLNIGGT 427 (945)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~sG~v~fd~~g~~~~~~y~i~~~~~~ 427 (945)
. .+++.|.++|++++|+|++|+++||++++.....+.|++++.+
T Consensus 304 ~-----------------------------~~~~~v~~aL~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~ 347 (374)
T 3n0x_A 304 S-----------------------------TDTEKLIAAMEGMEFDTPKGKMVFRKEDHQALQSMYHFKVKVD 347 (374)
T ss_dssp S-----------------------------CCHHHHHHHHTTCEEEETTEEEEECTTTCBEECCEEEEEEECC
T ss_pred C-----------------------------CCHHHHHHHHhcCCccCCCCCEEECcccCccccceEEEEEEeC
Confidence 1 1589999999999999999999999644345578899998753
No 30
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=100.00 E-value=2.1e-36 Score=339.46 Aligned_cols=344 Identities=14% Similarity=0.213 Sum_probs=297.5
Q ss_pred CCceEEEEEEeccCC---ccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEcc
Q 002267 47 RPSSVRIGALFTYDS---VIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMEN-EVVAAIGP 122 (945)
Q Consensus 47 ~~~~i~IG~l~~l~~---~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~-~v~aiiGp 122 (945)
..++|+||+++|++. ..|.....|+++|++++| +++ +|+++++++.|+++++..+.+.+.+|+++ +|.+||||
T Consensus 13 ~~~~i~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~n--g~~-~g~~~~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~ 89 (375)
T 4evq_A 13 QAGALKVGLLLPYSGTYAPLGEAITRGLELYVQSQG--GKL-GGRSISFVKVDDESAPPKATELTTKLIQSEKADVLIGT 89 (375)
T ss_dssp --CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHTT--TEE-TTEEEEEEEEECTTCHHHHHHHHHCCCCCSCCSEEEEC
T ss_pred hCCCeEEEEEeCCCCcchhcCHHHHHHHHHHHHHhC--CCc-CCEEEEEEEecCCCCHHHHHHHHHHHHhcCCceEEEcC
Confidence 346899999999983 467889999999999998 555 69999999999999999999999999986 99999999
Q ss_pred CChhHHHHHHHhhcccCccEEecccCCCCCCCC-CCCceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEeCCcccchHH
Q 002267 123 QSSGIAHVISHVVNELNVPLLSFGATDPTLTSL-QYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDDYGRNGIS 201 (945)
Q Consensus 123 ~~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~~-~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~ 201 (945)
.+|..+.+++++++..++|+|++.++++.+++. .+|++||+.+++..++.++++++.++||++|++|+.++.+|+...+
T Consensus 90 ~~s~~~~~~~~~~~~~~iP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~ 169 (375)
T 4evq_A 90 VHSGVAMAMVKIAREDGIPTIVPNAGADIITRAMCAPNVFRTSFANGQIGRATGDAMIKAGLKKAVTVTWKYAAGEEMVS 169 (375)
T ss_dssp SSHHHHHHHHHHHHHHCCCEEESSCCCGGGGTTTCCTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHH
T ss_pred CccHHHHHHHHHHHHcCceEEecCCCChhhcccCCCCCEEEeeCChHhHHHHHHHHHHHcCCcEEEEEecCchHHHHHHH
Confidence 999999999999999999999999998888874 4899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcChhhHHHHHHHHHhCCCCCCCeEEEEeCCCccc
Q 002267 202 VLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIATDWLPSV 281 (945)
Q Consensus 202 ~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~ 281 (945)
.+++++++.|++++....++ .+..++...++++++.++|+|++.+....+..++++++++|+.. .|+.+++...
T Consensus 170 ~~~~~l~~~G~~v~~~~~~~--~~~~d~~~~~~~l~~~~~dai~~~~~~~~a~~~~~~~~~~g~~v---p~~~~~~~~~- 243 (375)
T 4evq_A 170 GFKKSFTAGKGEVVKDITIA--FPDVEFQSALAEIASLKPDCVYAFFSGGGALKFIKDYAAANLGI---PLWGPGFLTD- 243 (375)
T ss_dssp HHHHHHHHTTCEEEEEEEEC--TTCCCCHHHHHHHHHHCCSEEEEECCTHHHHHHHHHHHHTTCCC---CEEEEGGGTT-
T ss_pred HHHHHHHHcCCeEEEEEecC--CCCccHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCc---eEEecCcCCH-
Confidence 99999999999998877776 45667888999999889999999999999999999999999874 3555543111
Q ss_pred cCCCCCCChhHHhhhcceeEEEeecCC--CchhhHHHHHHHhhhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhcCCc
Q 002267 282 LDSTEPVDIDTMNLLQGVVALRHHTPD--TDLKKNFISRWKNLKYKENSPSGFNSYALYAYDSVWLVAHALDALLNEGGK 359 (945)
Q Consensus 282 ~~~~~~~~~~~~~~~~G~~~~~~~~~~--~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~~~~~~~~ 359 (945)
+. .+......+|++...++.++ .+..++|.++|+++| +..++.++..+|||++++++|++++...
T Consensus 244 -~~----~~~~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~-----~~~p~~~~~~~yda~~~~~~al~~~g~~--- 310 (375)
T 4evq_A 244 -GV----EAAAGPAGDGIKTVLHYVSDLDNAENQAFVKSFEAAY-----KIPPDVFAVQGWDAGQLLDAGVKAVGGD--- 310 (375)
T ss_dssp -TT----HHHHGGGGTTCEEEESCCTTCCSHHHHHHHHHHHHHH-----SSCCCHHHHHHHHHHHHHHHHHHHTTTC---
T ss_pred -HH----HHhhhhhcCCeEEeeccCCCCCCHHHHHHHHHHHHHH-----CCCCcHHHHHHHHHHHHHHHHHHHhCCC---
Confidence 11 12333568899888777654 578999999999998 5678899999999999999999984210
Q ss_pred ccccCCCCCCCCCCCccccCCccccCchHHHHHHHHhcccccceeeEEEccCCCCCCCcEEEEEeeccceEEEEEecC
Q 002267 360 FTFSNDPKLHDTNGSMLNLSSLRVFDGGQQFLQTLLRMNFTGLSGEIRFDADKNLVNPAYDVLNIGGTGSRRIGYWSN 437 (945)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~sG~v~fd~~g~~~~~~y~i~~~~~~~~~~Vg~w~~ 437 (945)
+.+++.|.++|++++|+|++|+++||++|++. ..+.|+++++++++.|+.+-.
T Consensus 311 ------------------------~~~~~~l~~~l~~~~~~g~~G~i~f~~~g~~~-~~~~i~~~~~g~~~~v~~~~~ 363 (375)
T 4evq_A 311 ------------------------VAKRKELNAAMAAASFASPRGPFKLSAAHNPV-QNFYLRELKGGKSVNLGLAAP 363 (375)
T ss_dssp ------------------------TTCHHHHHHHHHTCEEEETTEEEEBCTTSCBC-CCEEEEEEETTEEEEEEEEEC
T ss_pred ------------------------CCCHHHHHHHHhcCCcccCCcceeECCCCCcc-ccEEEEEEECCCcEEeeehhh
Confidence 11589999999999999999999999999864 679999999999999998854
No 31
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=100.00 E-value=1.2e-36 Score=339.88 Aligned_cols=337 Identities=12% Similarity=0.127 Sum_probs=289.3
Q ss_pred CceEEEEEEeccC---CccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEccC
Q 002267 48 PSSVRIGALFTYD---SVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMEN-EVVAAIGPQ 123 (945)
Q Consensus 48 ~~~i~IG~l~~l~---~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~-~v~aiiGp~ 123 (945)
.++|+||+++|++ +..|.....|+++|++++|++||++ |+++++++.|+++++..+.+.+.+|+++ +|.+||||.
T Consensus 3 ~~~i~IG~~~p~sG~~~~~g~~~~~g~~~a~~~~N~~ggi~-G~~i~l~~~D~~~~~~~~~~~~~~l~~~~~v~~iig~~ 81 (364)
T 3lop_A 3 LADISVIQSLPLSGSQAVTGRALNAGARLYFDWLNLNGGIN-GETIRLVARDDEQKIEQTVRNVRDMARVDNPVALLTVV 81 (364)
T ss_dssp --CEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBT-TBCEEEEEEECTTCHHHHHHHHHHHHHHSCEEEEECCC
T ss_pred CCeEEEEEEecCCCcchhccHHHHHHHHHHHHHHHhcCCcC-CeEEEEEEeCCCCCHHHHHHHHHHHHhhcCcEEEEecC
Confidence 4689999999997 4567789999999999999999995 8999999999999999999999999996 999999999
Q ss_pred ChhHHHHHHH--hhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEeCCcccchHH
Q 002267 124 SSGIAHVISH--VVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDDYGRNGIS 201 (945)
Q Consensus 124 ~s~~~~~va~--~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~ 201 (945)
+|..+.++++ +++..+||+|++.++++.+++ +|++||+.|++..++.++++++.++||++|++|+.+++||+...+
T Consensus 82 ~s~~~~~~~~~~~~~~~~iP~v~~~~~~~~~~~--~~~~f~~~~~~~~~~~~~~~~l~~~g~~~iaii~~~~~~g~~~~~ 159 (364)
T 3lop_A 82 GTANVEALMREGVLAEARLPLVGPATGASSMTT--DPLVFPIKASYQQEIDKMITALVTIGVTRIGVLYQEDALGKEAIT 159 (364)
T ss_dssp CHHHHHHHHHTTHHHHHTCCEESCSCCCGGGGS--CTTEECCSCCHHHHHHHHHHHHHHTTCCCEEEEEETTHHHHHHHH
T ss_pred CCHHHHhhCchhhHHhcCCcEEEcccCcHhhcc--CCcEEEeCCChHHHHHHHHHHHHHcCCceEEEEEeCchhhHHHHH
Confidence 9999999999 999999999999888887776 799999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcChhhHHHHHHHHHhCCCCCCCeEEEEeCCCccc
Q 002267 202 VLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIATDWLPSV 281 (945)
Q Consensus 202 ~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~ 281 (945)
.+++++++.|++++....++ .+..|+...++++++.++|+|++++....+..++++++++|+..+ |+..+++...
T Consensus 160 ~~~~~~~~~G~~v~~~~~~~--~~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~---~i~~~~~~~~ 234 (364)
T 3lop_A 160 GVERTLKAHALAITAMASYP--RNTANVGPAVDKLLAADVQAIFLGATAEPAAQFVRQYRARGGEAQ---LLGLSSIDPG 234 (364)
T ss_dssp HHHHHHHTTTCCCSEEEEEC--TTSCCCHHHHHHHHHSCCSEEEEESCHHHHHHHHHHHHHTTCCCE---EEECTTSCHH
T ss_pred HHHHHHHHcCCcEEEEEEec--CCCccHHHHHHHHHhCCCCEEEEecCcHHHHHHHHHHHHcCCCCe---EEEeccCChH
Confidence 99999999999988777776 456788999999999999999999999999999999999998764 7776654321
Q ss_pred cCCCCCCChhHH-hhhcceeEEEee----cCCCchhhHHHHHHHhhhcCCCCCC--CCchhHHHHHHHHHHHHHHHHHHH
Q 002267 282 LDSTEPVDIDTM-NLLQGVVALRHH----TPDTDLKKNFISRWKNLKYKENSPS--GFNSYALYAYDSVWLVAHALDALL 354 (945)
Q Consensus 282 ~~~~~~~~~~~~-~~~~G~~~~~~~----~~~~~~~~~f~~~~~~~~~~~~~~~--~~~~~~~~~YDav~~la~Al~~~~ 354 (945)
... .... +..+|++....+ .++.+..++|.++|++++ +. .|+.++..+|||++++++|++++.
T Consensus 235 ~~~-----~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~-----~~~~~p~~~a~~~yda~~~~~~al~~ag 304 (364)
T 3lop_A 235 ILQ-----KVAGLDAVRGYSLALVMPNPGKSVNPVIREFNRARAAVG-----AKDVDLSFRAVEGFVAAKVLAEAIRRAG 304 (364)
T ss_dssp HHH-----HHHCHHHHTTCEEEECSCCTTCTTSHHHHHHHHHHHHHT-----CTTCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHH-----HHhChhhcCCeEEEEEeCCCCCCCCHHHHHHHHHHHHhc-----CCCCCCChHHHHHHHHHHHHHHHHHHhC
Confidence 100 1222 567888776532 256788999999999988 33 788999999999999999999962
Q ss_pred hcCCcccccCCCCCCCCCCCccccCCccccCchHHHHHHHHhc-cccc-ceeeEEEccCCCCCCCcEEEEEeeccceE
Q 002267 355 NEGGKFTFSNDPKLHDTNGSMLNLSSLRVFDGGQQFLQTLLRM-NFTG-LSGEIRFDADKNLVNPAYDVLNIGGTGSR 430 (945)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~f~G-~sG~v~fd~~g~~~~~~y~i~~~~~~~~~ 430 (945)
++ .+++.|.++|+++ +|+| ++|+++|+++++.......|.+++++++.
T Consensus 305 ---~~-------------------------~~~~~v~~aL~~~~~~~~~~~g~i~f~~~~~~~~~~~~i~~~~~~~~~ 354 (364)
T 3lop_A 305 ---PK-------------------------PTREQVRHALTELRDYDVGGGFTVDFTDRSRPGSHYIELGVVGPNGLV 354 (364)
T ss_dssp ---SS-------------------------CCHHHHHHHHHTCEEEESSTTCEEECSSTTSCSCCCCEEEEECTTSCE
T ss_pred ---CC-------------------------CCHHHHHHHHHhcCCccCCCCeeeecCCCCcCCcceEEEEEEcCCCcc
Confidence 11 1589999999999 6999 99999999887766667788888766543
No 32
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=100.00 E-value=2.6e-36 Score=337.83 Aligned_cols=344 Identities=15% Similarity=0.214 Sum_probs=293.6
Q ss_pred CCceEEEEEEeccCC---ccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHh-cCcEEEEcc
Q 002267 47 RPSSVRIGALFTYDS---VIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLME-NEVVAAIGP 122 (945)
Q Consensus 47 ~~~~i~IG~l~~l~~---~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~-~~v~aiiGp 122 (945)
..++|+||+++|++. ..|.....|+++|++++|. ++ +|++|+++++|+++++..+.+.+.+|++ ++|.+||||
T Consensus 3 a~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~~~~--~i-~G~~i~l~~~D~~~~~~~~~~~~~~li~~~~v~~iiG~ 79 (368)
T 4eyg_A 3 AEDTFKVGLIVPMTGGQASTGKQIDNAIKLYIKKHGD--TV-AGKKIEVILKDDAAIPDNTKRLAQELIVNDKVNVIAGF 79 (368)
T ss_dssp -CCEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHCS--EE-TTEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEEC
T ss_pred CCCcEEEEEEeCCcCcchhccHHHHHHHHHHHHHcCC--CC-CCeEEEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEECC
Confidence 356899999999983 4578899999999999973 34 5899999999999999999999999998 699999999
Q ss_pred CChhHHHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEeCCcccchHHH
Q 002267 123 QSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDDYGRNGISV 202 (945)
Q Consensus 123 ~~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~ 202 (945)
.+|..+.+++++++..++|+|+++++++.+++. +||+||+.|++..++.++++++.++||++|++|+.|+.+|....+.
T Consensus 80 ~~s~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~g~~~~~~ 158 (368)
T 4eyg_A 80 GITPAALAAAPLATQAKVPEIVMAAGTSIITER-SPYIVRTSFTLAQSSIIIGDWAAKNGIKKVATLTSDYAPGNDALAF 158 (368)
T ss_dssp SSHHHHHHHHHHHHHHTCCEEESSCCCGGGGGG-CTTEEESSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHH
T ss_pred CccHHHHHHHHHHHhCCceEEeccCCChhhccC-CCCEEEecCChHHHHHHHHHHHHHcCCCEEEEEecCchHhHHHHHH
Confidence 999999999999999999999998888878765 7999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcChhhHHHHHHHHHhCCCCCCCeEEEEeCCCccc-
Q 002267 203 LGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIATDWLPSV- 281 (945)
Q Consensus 203 l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~- 281 (945)
+++++++.|++++....++ .+..|+...++++++.++|+|++.+....+..++++++++|+..+++.|+.++++...
T Consensus 159 ~~~~l~~~g~~v~~~~~~~--~~~~d~~~~~~~l~~~~~d~v~~~~~~~~a~~~~~~~~~~g~~~~~v~~~~~~~~~~~~ 236 (368)
T 4eyg_A 159 FKERFTAGGGEIVEEIKVP--LANPDFAPFLQRMKDAKPDAMFVFVPAGQGGNFMKQFAERGLDKSGIKVIGPGDVMDDD 236 (368)
T ss_dssp HHHHHHHTTCEEEEEEEEC--SSSCCCHHHHHHHHHHCCSEEEEECCTTCHHHHHHHHHHTTGGGTTCEEEEETTTTCHH
T ss_pred HHHHHHHcCCEEEEEEeCC--CCCCcHHHHHHHHHhcCCCEEEEeccchHHHHHHHHHHHcCCCcCCceEEecCcccCHH
Confidence 9999999999999887777 4567889999999999999999988888999999999999998766788888753321
Q ss_pred -cCCCCCCChhHHhhhcceeEEEeecC--CCchhhHHHHHHHhhhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhcCC
Q 002267 282 -LDSTEPVDIDTMNLLQGVVALRHHTP--DTDLKKNFISRWKNLKYKENSPSGFNSYALYAYDSVWLVAHALDALLNEGG 358 (945)
Q Consensus 282 -~~~~~~~~~~~~~~~~G~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~~~~~~~ 358 (945)
+.. .....+|++...++.+ +++..++|.++| ++| .+..++.++..+|||++++++|++++. +
T Consensus 237 ~~~~-------~g~~~~g~~~~~~~~~~~~~~~~~~f~~~~-~~~----~~~~p~~~~~~~yda~~~~~~al~~~g---~ 301 (368)
T 4eyg_A 237 LLNS-------MGDAALGVVTAHMYSAAHPSAMNKEFVAAY-KKE----FGQRPGFMAVGGYDGIHLVFEALKKTG---G 301 (368)
T ss_dssp HHTT-------CCGGGTTCEEEESCCTTCCSHHHHHHHHHH-HHH----HSSCCCHHHHHHHHHHHHHHHHHHHTT---T
T ss_pred HHHh-------hhhhhCCeEEeeecCCCCCCHHHHHHHHHH-HHh----CCCCCChHHHHHHHHHHHHHHHHHHhC---C
Confidence 111 1245788888877764 457899999999 776 244678999999999999999999942 1
Q ss_pred cccccCCCCCCCCCCCccccCCccccCchHHHHHHHHhcccccceeeEEEc-cCCCCCCCcEEEEEee--ccceE--EEE
Q 002267 359 KFTFSNDPKLHDTNGSMLNLSSLRVFDGGQQFLQTLLRMNFTGLSGEIRFD-ADKNLVNPAYDVLNIG--GTGSR--RIG 433 (945)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~sG~v~fd-~~g~~~~~~y~i~~~~--~~~~~--~Vg 433 (945)
+ . +++.|.++|++++|+|++|+++|| ++|+. ...+.|.+++ ++.++ .++
T Consensus 302 ~------------------------~-~~~~l~~al~~~~~~g~~G~i~f~~~~~~~-~~~~~i~~~~~~~G~~~~v~~~ 355 (368)
T 4eyg_A 302 K------------------------A-DGDSLIAAMKGMKWESPRGPISIDPETRDI-VQNIYIRKVEKVDGELYNIEFA 355 (368)
T ss_dssp C------------------------C-SHHHHHHHHTTCEEEETTEEEEECTTTCCE-EEEEEEEEEEEETTEEEEEEEE
T ss_pred C------------------------C-CHHHHHHHHHcCCcccCCCCeEECcccCCc-ccceEEEEEEecCCeEEEEEee
Confidence 1 1 489999999999999999999999 67764 5678898888 66664 455
Q ss_pred EecC
Q 002267 434 YWSN 437 (945)
Q Consensus 434 ~w~~ 437 (945)
.|.+
T Consensus 356 ~~~~ 359 (368)
T 4eyg_A 356 KFDA 359 (368)
T ss_dssp EEEE
T ss_pred cccc
Confidence 5553
No 33
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=100.00 E-value=2.3e-35 Score=332.34 Aligned_cols=342 Identities=14% Similarity=0.198 Sum_probs=284.8
Q ss_pred CceEEEEEEeccCC---ccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEccC
Q 002267 48 PSSVRIGALFTYDS---VIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMEN-EVVAAIGPQ 123 (945)
Q Consensus 48 ~~~i~IG~l~~l~~---~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~-~v~aiiGp~ 123 (945)
.++|+||+++|++. ..|.....|+++|++++| |+++++++.|+++++..+.+.+.+|+++ +|.+||||.
T Consensus 25 ~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~i~-------G~~i~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~ 97 (386)
T 3sg0_A 25 QAEIKIGITMSASGPGAALGQPQSKTVAALPKEIG-------GEKVTYFALDDESDPTKAAQNARKLLSEEKVDVLIGSS 97 (386)
T ss_dssp CCCEEEEEEECCSSTTHHHHHHHHHHGGGSCSEET-------TEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEECCS
T ss_pred CCceEEEEEeccCCchhhhcHHHHHHHHHHHHHcC-------CEEEEEEEecCCCCHHHHHHHHHHHHhhcCceEEECCC
Confidence 46899999999984 457788999999999983 7999999999999999999999999998 899999999
Q ss_pred ChhHHHHHHHhhcccCccEEecccCCCCCC--CCCCCceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEeCCcccchHH
Q 002267 124 SSGIAHVISHVVNELNVPLLSFGATDPTLT--SLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDDYGRNGIS 201 (945)
Q Consensus 124 ~s~~~~~va~~~~~~~iP~Is~~a~~~~ls--~~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~ 201 (945)
+|..+.++.+++++.++|+|++.++++.++ ...+|++||+.+++..++.++++++.++||++|++|+.+++||+...+
T Consensus 98 ~s~~~~~~~~~~~~~~ip~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~ 177 (386)
T 3sg0_A 98 LTPVSLPLIDIAAEAKTPLMTMAAAAILVAPMDERRKWVYKVVPNDDIMAEAIGKYIAKTGAKKVGYIGFSDAYGEGYYK 177 (386)
T ss_dssp SHHHHHHHHHHHHHTTCCEEECCCCGGGTCSCCTTGGGEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHH
T ss_pred CchhHHHHHHHHHhcCCeEEEecCCCccccccCCCCCcEEecCCCcHHHHHHHHHHHHhcCCCEEEEEecCchHHHHHHH
Confidence 999999999999999999999988888777 356899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcChhhHHHHHHHHHhCCCCCCCeEEEEeCCCccc
Q 002267 202 VLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIATDWLPSV 281 (945)
Q Consensus 202 ~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~ 281 (945)
.+++++++.|++++....++ .+..++...++++++.++|+|++.+....+..++++++++|+.. .++..+++...
T Consensus 178 ~~~~~l~~~g~~v~~~~~~~--~~~~d~~~~~~~~~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~~~~~ 252 (386)
T 3sg0_A 178 VLAAAAPKLGFELTTHEVYA--RSDASVTGQVLKIIATKPDAVFIASAGTPAVLPQKALRERGFKG---AIYQTHGVATE 252 (386)
T ss_dssp HHHHHHHHHTCEECCCEEEC--TTCSCCHHHHHHHHHTCCSEEEEECCSGGGHHHHHHHHHTTCCS---EEECCGGGCSH
T ss_pred HHHHHHHHcCCEEEEEEeeC--CCCCcHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCC---cEEeccccCCH
Confidence 99999999999998766666 45678889999999999999999999899999999999999875 35655544321
Q ss_pred cCCCCCCChhHHhhhcceeEEEee------cCC-C---chhhHHHHHHHhhhcCCCCCCCCchhHHHHHHHHHHHHHHHH
Q 002267 282 LDSTEPVDIDTMNLLQGVVALRHH------TPD-T---DLKKNFISRWKNLKYKENSPSGFNSYALYAYDSVWLVAHALD 351 (945)
Q Consensus 282 ~~~~~~~~~~~~~~~~G~~~~~~~------~~~-~---~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~ 351 (945)
+. .....+..+|++....+ .|. . +..++|.++|+++| +...++.++..+||+++++++|++
T Consensus 253 -~~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~----~~~~p~~~~~~~yda~~~~~~al~ 323 (386)
T 3sg0_A 253 -EF----IKLGGKDVEGAIFAGEAFSGAEDMPADSPFRKVKARFVDAYKAAN----GGAAPTIFGVHLWDSMTLVENAIP 323 (386)
T ss_dssp -HH----HHHHGGGGTTCEEEECHHHHGGGSCTTCHHHHHHHHHHHHHHHHT----TTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred -HH----HHhhhhhcCCeEEecccccccccCCCCCcchHHHHHHHHHHHHHh----CCCCCChhHHHHHHHHHHHHHHHH
Confidence 00 01223567888876542 222 2 45799999999998 233678999999999999999999
Q ss_pred HHHhcCCcccccCCCCCCCCCCCccccCCccccCchHHHHHHHHhc-ccccceeeEEEccCCCC--CCCcEEEEEeeccc
Q 002267 352 ALLNEGGKFTFSNDPKLHDTNGSMLNLSSLRVFDGGQQFLQTLLRM-NFTGLSGEIRFDADKNL--VNPAYDVLNIGGTG 428 (945)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~f~G~sG~v~fd~~g~~--~~~~y~i~~~~~~~ 428 (945)
++.+.... |. +.+++.|.++|+++ +|+|++|+++|+++++. ....+.|+++++++
T Consensus 324 ~a~~~~~~-------------g~---------~~~~~~~~~al~~~~~~~g~~G~~~f~~~~~~g~~~~~~~i~~~~~G~ 381 (386)
T 3sg0_A 324 AALKAAKP-------------GT---------PEFRAAIRDQIEKSKDLALNNGLSNMTPDNHNGYDERSAFLIEIRDGA 381 (386)
T ss_dssp HHHHHCCT-------------TS---------HHHHHHHHHHHTTCCSEEETTEEECCCSSCSSCCCGGGCEEEEEETTE
T ss_pred HhhhccCC-------------CC---------cchHHHHHHHHHhccCccccceeEEECCCcCCCCCCCceEEEEEECCE
Confidence 98654310 00 12478999999999 89999999999987543 23568999999888
Q ss_pred eEEE
Q 002267 429 SRRI 432 (945)
Q Consensus 429 ~~~V 432 (945)
++.+
T Consensus 382 ~~~~ 385 (386)
T 3sg0_A 382 FRLK 385 (386)
T ss_dssp EEEC
T ss_pred EEec
Confidence 7654
No 34
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=100.00 E-value=2.2e-33 Score=315.81 Aligned_cols=347 Identities=13% Similarity=0.051 Sum_probs=283.0
Q ss_pred CCceEEEEEEeccCC---ccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHh-cCcEEEEcc
Q 002267 47 RPSSVRIGALFTYDS---VIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLME-NEVVAAIGP 122 (945)
Q Consensus 47 ~~~~i~IG~l~~l~~---~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~-~~v~aiiGp 122 (945)
.+++++||+++|++. .+|.....|+++|++++|++||++ |+++++++.|+++++..+.+.+.+|++ ++|.+|||+
T Consensus 4 ~~~~~~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~N~~ggi~-G~~l~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~ 82 (385)
T 1pea_A 4 HQERPLIGLLFSETGVTADIERSQRYGALLAVEQLNREGGVG-GRPIETLSQDPGGDPDRYRLCAEDFIRNRGVRFLVGC 82 (385)
T ss_dssp ----CEEEEECCSSSTTHHHHHHHHHHHHHHHHHHHTTTTBT-TBCCEEEEECCTTCHHHHHHHHHHHHHTTCCCEEEEC
T ss_pred CCCCeEEEEEECCCCcchhcCHHHHHHHHHHHHHhccccCCC-CeEEEEEEeCCCCCHHHHHHHHHHHHhhCCcEEEECC
Confidence 346899999999974 367788999999999999999996 899999999999999999999999997 699999999
Q ss_pred CChhHHHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEeCCcccchHHH
Q 002267 123 QSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDDYGRNGISV 202 (945)
Q Consensus 123 ~~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~ 202 (945)
.+|..+.++.++++..++|+|++.+... ...+|++||+.+++..++.++++++.+.+|++|++|+.++.+++...+.
T Consensus 83 ~~s~~~~~~~~~~~~~~iP~v~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~ 159 (385)
T 1pea_A 83 YMSHTRKAVMPVVERADALLCYPTPYEG---FEYSPNIVYGGPAPNQNSAPLAAYLIRHYGERVVFIGSDYIYPRESNHV 159 (385)
T ss_dssp CSHHHHHHHHHHHHHTTCEEEECSCCCC---CCCCTTEEECSCCGGGTHHHHHHHHHTTTCSEEEEEEESSHHHHHHHHH
T ss_pred CchHHHHHHHHHHHhcCceEEECCcccC---ccCCCCEEEecCChHHhHHHHHHHHHHccCcEEEEEeCCChHHHHHHHH
Confidence 9998888999999999999999765421 1246899999999999999999999888999999999988899999999
Q ss_pred HHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcChhhHHHHHHHHHhCCCCCCCeEEEEeCCCcccc
Q 002267 203 LGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIATDWLPSVL 282 (945)
Q Consensus 203 l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~ 282 (945)
+++++++.|+++.....++...+..++...+++|++.++|+|++......+..++++++++|+..+.+.++..++....+
T Consensus 160 ~~~~l~~~G~~v~~~~~~~~~~~~~d~~~~~~~l~~~~pdaI~~~~~~~~a~~~~~~~~~~G~~~~~~~~~~~~~~~~~~ 239 (385)
T 1pea_A 160 MRHLYRQHGGTVLEEIYIPLYPSDDDLQRAVERIYQARADVVFSTVVGTGTAELYRAIARRYGDGRRPPIASLTTSEAEV 239 (385)
T ss_dssp HHHHHHHTTCEEEEEEEECSSCCHHHHHHHHHHHHHHTCSEEEEECCTHHHHHHHHHHHHHHCSSCCCCEEESSCCHHHH
T ss_pred HHHHHHHcCCEEEEEEeecCCCCcchHHHHHHHHHHCCCCEEEEecccccHHHHHHHHHHcCCCcCCceEEecccchHHH
Confidence 99999999999887655552236788999999998889999999888888999999999999875545555544322111
Q ss_pred CCCCCCChhHHhhhcceeEEEeecC--CCchhhHHHHHHHhhhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhcCCcc
Q 002267 283 DSTEPVDIDTMNLLQGVVALRHHTP--DTDLKKNFISRWKNLKYKENSPSGFNSYALYAYDSVWLVAHALDALLNEGGKF 360 (945)
Q Consensus 283 ~~~~~~~~~~~~~~~G~~~~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~~~~~~~~~ 360 (945)
.. ...+..+|+++..++.+ +++..++|.++|+++|. ....++.++..+|||++++++|++++...
T Consensus 240 ~~------~~~~~~~g~~~~~~~~~~~~~~~~~~f~~~~~~~~g---~~~~~~~~~~~~yda~~~~~~Al~~ag~~---- 306 (385)
T 1pea_A 240 AK------MESDVAEGQVVVAPYFSSIDTPASRAFVQACHGFFP---ENATITAWAEAAYWQTLLLGRAAQAAGNW---- 306 (385)
T ss_dssp TT------SCHHHHTTCEEEESCCTTCSSHHHHHHHHHHHTTSC---TTCCCCHHHHHHHHHHHHHHHHHHHHTSC----
T ss_pred Hh------cCchhhCCeEEecccccccCCHHHHHHHHHHHHHhC---CCCCCChHHHHHHHHHHHHHHHHHHhCCC----
Confidence 11 01146789888876654 46778999999999872 11247789999999999999999996210
Q ss_pred cccCCCCCCCCCCCccccCCccccCchHHHHHHHHhcccccceeeEEEccCCCCCCCcEEEEEe-eccceEEEEEe
Q 002267 361 TFSNDPKLHDTNGSMLNLSSLRVFDGGQQFLQTLLRMNFTGLSGEIRFDADKNLVNPAYDVLNI-GGTGSRRIGYW 435 (945)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~sG~v~fd~~g~~~~~~y~i~~~-~~~~~~~Vg~w 435 (945)
+++.|.++|++++|+|++|.++||++++.....+.|.++ +++.++.|...
T Consensus 307 -------------------------~~~~l~~al~~~~~~g~~G~i~f~~~~~~~~~~~~i~~~~~~g~~~~v~~~ 357 (385)
T 1pea_A 307 -------------------------RVEDVQRHLYDIDIDAPQGPVRVERQNNHSRLSSRIAEIDARGVFQVRWQS 357 (385)
T ss_dssp -------------------------CHHHHHHHHTTCCEEETTEEEEECTTTSCEEBCCEEEEECTTSCEEEEEEC
T ss_pred -------------------------CHHHHHHHHhhCcccCCCCCeEEcCCCCccccceEEEEEcCCCcEEEeecC
Confidence 488999999999999999999999855444567888888 67777777554
No 35
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=100.00 E-value=8.9e-34 Score=316.40 Aligned_cols=341 Identities=13% Similarity=0.138 Sum_probs=282.5
Q ss_pred CCceEEEEEEeccCC---ccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc-CcEEEEcc
Q 002267 47 RPSSVRIGALFTYDS---VIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMEN-EVVAAIGP 122 (945)
Q Consensus 47 ~~~~i~IG~l~~l~~---~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~-~v~aiiGp 122 (945)
..++|+||+++|++. ..|.....|+++|++++| |+++++++.|+++++..+.+.+.+|+++ +|.+||||
T Consensus 4 a~~~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~i~-------g~~i~l~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~ 76 (362)
T 3snr_A 4 ETNEITVGISVTTTGPAAALGIPERNALEFVVKEIS-------GHPIKIIVLDDGGDPTAATTNARRFVTESKADVIMGS 76 (362)
T ss_dssp CCCCEEEEEEECCSSTTHHHHHHHHHGGGGSCSEET-------TEEEEEEEEECTTCHHHHHHHHHHHHHTSCCSEEEEC
T ss_pred CCCCeEEEEEecccCchhhcCHHHHHHHHHHHHHhC-------CeEEEEEEecCCCCHHHHHHHHHHHHhccCceEEEcC
Confidence 356899999999984 457788999999999983 7899999999999999999999999998 89999999
Q ss_pred CChhHHHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEeCCcccchHHH
Q 002267 123 QSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDDYGRNGISV 202 (945)
Q Consensus 123 ~~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~ 202 (945)
.+|..+.++.++++..++|+|++.++ + +....+|++||+.+++..++.++++++.++||++|++|+.++.||+...+.
T Consensus 77 ~~s~~~~~~~~~~~~~~ip~v~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~ia~i~~~~~~~~~~~~~ 154 (362)
T 3snr_A 77 SVTPPSVAISNVANEAQIPHIALAPL-P-ITPERAKWSVVMPQPIPIMGKVLYEHMKKNNVKTVGYIGYSDSYGDLWFND 154 (362)
T ss_dssp SSHHHHHHHHHHHHHHTCCEEESSCC-C-CCTTTTTTEEECSCCHHHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCccEEEecCC-c-cccCCCCcEEecCCChHHHHHHHHHHHHhcCCCEEEEEecCchHHHHHHHH
Confidence 99999999999999999999998776 4 334568999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcChhhHHHHHHHHHhCCCCCCCeEEEEeCCCcccc
Q 002267 203 LGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIATDWLPSVL 282 (945)
Q Consensus 203 l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~ 282 (945)
+++++++.|++++....++ .+..++...+.++++.++++|++++....+..++++++++|+..+ ++...++....
T Consensus 155 ~~~~l~~~g~~v~~~~~~~--~~~~~~~~~~~~l~~~~~dav~~~~~~~~a~~~~~~~~~~g~~~p---~i~~~g~~~~~ 229 (362)
T 3snr_A 155 LKKQGEAMGLKIVGEERFA--RPDTSVAGQALKLVAANPDAILVGASGTAAALPQTTLRERGYNGL---IYQTHGAASMD 229 (362)
T ss_dssp HHHHHHHTTCEEEEEEEEC--TTCSCCHHHHHHHHHHCCSEEEEECCHHHHHHHHHHHHHTTCCSE---EEECGGGCSHH
T ss_pred HHHHHHHcCCEEEEEeecC--CCCCCHHHHHHHHHhcCCCEEEEecCcchHHHHHHHHHHcCCCcc---EEeccCcCcHH
Confidence 9999999999998777776 456778889999998999999999989999999999999998763 46555443210
Q ss_pred CCCCCCChhHHhhhcceeEEEee----------cCCCchhhHHHHHHHhhhcCCCCCCCCchhHHHHHHHHHHHHHHHHH
Q 002267 283 DSTEPVDIDTMNLLQGVVALRHH----------TPDTDLKKNFISRWKNLKYKENSPSGFNSYALYAYDSVWLVAHALDA 352 (945)
Q Consensus 283 ~~~~~~~~~~~~~~~G~~~~~~~----------~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~ 352 (945)
. ........+|++....+ .|..+..++|.++|+++| +...++.++..+|||++++++|+++
T Consensus 230 -~----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~----~~~~p~~~~~~~yda~~~~~~al~~ 300 (362)
T 3snr_A 230 -F----IRIAGKSAEGVLMASGPVMDPEGQDDTALTKKPGMALVKVYEEKY----GPSSRSQFAGHSYDAFKVLERVVPV 300 (362)
T ss_dssp -H----HHHHGGGGTTCEEEECGGGCSTTSCTTCTTHHHHHHHHHHHHHHH----CTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred -H----HHHhHHHhCCCEEecccccccccCCCcCcccHHHHHHHHHHHHHh----CCCCCCchhHhHHHHHHHHHHHHHH
Confidence 0 01223567888877642 122356899999999998 2226789999999999999999999
Q ss_pred HHhcCCcccccCCCCCCCCCCCccccCCccccCchHHHHHHHHhc-ccccceeeEEEccCCCC--CCCcEEEEEeeccce
Q 002267 353 LLNEGGKFTFSNDPKLHDTNGSMLNLSSLRVFDGGQQFLQTLLRM-NFTGLSGEIRFDADKNL--VNPAYDVLNIGGTGS 429 (945)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~f~G~sG~v~fd~~g~~--~~~~y~i~~~~~~~~ 429 (945)
+.+.... | .+.+++.|.++|+++ +|+|++|+++|+++++. ....+.|++++++++
T Consensus 301 a~~~~~~-------------g---------~~~~~~~~~~al~~~~~~~g~~G~~~f~~~~~~g~~~~~~~i~~~~~G~~ 358 (362)
T 3snr_A 301 ALKKAKP-------------G---------TQEFREALREAFLTEKDIAASQGVYNFTETDRYGLDDRSRILLTVKNGKY 358 (362)
T ss_dssp HHHHCCT-------------T---------SHHHHHHHHHHHHHCCCEECSSCEECCCSSCSSCCCGGGCEEEEEETTEE
T ss_pred hhccccC-------------C---------CcchHHHHHHHHHhcCCcccceeeEEeCCCCCCCCCCCCeEEEEEECCEE
Confidence 8654210 0 022478999999999 89999999999987543 345689999998877
Q ss_pred EEE
Q 002267 430 RRI 432 (945)
Q Consensus 430 ~~V 432 (945)
+.|
T Consensus 359 ~~v 361 (362)
T 3snr_A 359 VIV 361 (362)
T ss_dssp EEC
T ss_pred EEc
Confidence 654
No 36
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=99.96 E-value=2.2e-28 Score=264.50 Aligned_cols=307 Identities=11% Similarity=0.098 Sum_probs=243.6
Q ss_pred EEEEEeccC---CccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChhHH
Q 002267 52 RIGALFTYD---SVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAIGPQSSGIA 128 (945)
Q Consensus 52 ~IG~l~~l~---~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~~ 128 (945)
+||+++|+| +..|...++|+++|. .|++++++++|+++++ +...+.++++++|.+||||.+|..+
T Consensus 2 kIG~llplSG~~a~~G~~~~~G~~lA~----------~G~~i~l~~~D~~~~~--a~~~~~~l~~~~v~~IiGp~~s~~~ 69 (325)
T 2h4a_A 2 QIGLLLPLSGDGQILGTTIQSGFNDAK----------GNSTIPVQVFDTSMNS--VQDIIAQAKQAGIKTLVGPLLKQNL 69 (325)
T ss_dssp CEEEEECCSSTTHHHHHHHHHHHHHHH----------TTCCSCEEEEETTTSC--HHHHHHHHHHTTCCEEECCCSHHHH
T ss_pred cEEEEECCCCccHHHHHHHHHHHHHhc----------cCCCceEEEEECCCCh--HHHHHHHHHHCCCCEEEeeCCHHHH
Confidence 699999999 567899999999986 2789999999999997 5677888888899999999999999
Q ss_pred HHHHHhh-cccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEeCCcccchHHHHHHHH
Q 002267 129 HVISHVV-NELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDDYGRNGISVLGDAL 207 (945)
Q Consensus 129 ~~va~~~-~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l 207 (945)
.++++.+ +..+||+|++++++. .....+.|+||+.| ..++.++++++...|.|++++|+.+++||++..+.|++++
T Consensus 70 ~a~~~~~~~~~~vp~i~~~~~~~-~~~~~~~~~f~~~~--~~~~~~~a~~a~~~g~k~vail~~~~~yG~~~~~~F~~~~ 146 (325)
T 2h4a_A 70 DVILADPAQIQGMDVLALNATPN-SRAIPQLCYYGLSP--EDEAESAANKMWNDGVRNPLVAMPQNDLGQRVGNAFNVRW 146 (325)
T ss_dssp HHHHHCGGGGTTCEEEESCCCSS-CCCCTTEEECCCCH--HHHHHHHHHHHHHTTCCSCEEEEESSHHHHHHHHHHHHHH
T ss_pred HHHHhhhhccCCCcEEECCCCcc-ccCCCCeEEEECCH--HHHHHHHHHHHHHcCCCeEEEEEcCCcHHHHHHHHHHHHH
Confidence 9999999 789999999876543 32233456677554 4578999999988899999999999999999999999999
Q ss_pred hhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcChhhHHHHHHHHHhCCCCCCCeEEEEeCCCc--cccCCC
Q 002267 208 SKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIATDWLP--SVLDST 285 (945)
Q Consensus 208 ~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~--~~~~~~ 285 (945)
++.|++|+..+.++ .+ +|+...|+++ ..++|+|++.+++.++..+.++++..|.. -..+.++++. +. ..
T Consensus 147 ~~~Gg~vv~~~~y~--~~-~d~~~~l~~i-~~~pDaV~~~~~~~~~~~i~~~~~~~g~~---~pl~~~~~~~~~s~-~~- 217 (325)
T 2h4a_A 147 QQLAGTDANIRYYN--LP-ADVTYFVQEN-NSNTTALYAVASPTELAEXKGYLTNIVPN---LAIYASSRASASAT-NT- 217 (325)
T ss_dssp HHHHSSCCEEEEES--ST-THHHHHHHHS-TTCCCEEEECCCHHHHHHHHHHHTTTCTT---CEEEECGGGCCHHH-HT-
T ss_pred HHcCCCcceeEecC--CH-HHHHHHHHhc-CCCCCEEEEeCCHHHHhhhhhhHhhcCCC---CCEEEeccccccCC-CC-
Confidence 99999999888887 34 6999999999 48999999999999998888888876543 3567776665 22 11
Q ss_pred CCCChhHHhhhcceeEEE-eec--CCCchhhHHHHHHHhhhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhcCCcccc
Q 002267 286 EPVDIDTMNLLQGVVALR-HHT--PDTDLKKNFISRWKNLKYKENSPSGFNSYALYAYDSVWLVAHALDALLNEGGKFTF 362 (945)
Q Consensus 286 ~~~~~~~~~~~~G~~~~~-~~~--~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~~~~~~~~~~~ 362 (945)
.+.....++|++... ++. ++.+..++|.++|+..+ .+....+++|||+.+++++ .++.
T Consensus 218 ---~~~~~~~~~Gv~f~~~p~~~~~~~~~~~~f~~~~~~~~-------~~~rl~AlgyDA~~l~~~l-~~l~-------- 278 (325)
T 2h4a_A 218 ---NTDFIAQMNGVQFSDIPFFKDTNSPQYQKLAKSTGGEY-------QLMRLYAMGADAWLLINQF-NELR-------- 278 (325)
T ss_dssp ---CHHHHHHTTTCEEEECGGGSCCCSHHHHHHHHHTTTCH-------HHHHHHHHHHHHHHHHHTH-HHHH--------
T ss_pred ---CchhhhhcCCcEEEccccccCCCcHHHHHHHhccCCCc-------chHHHHHHHHHHHHHHHHH-HHHh--------
Confidence 134456789988765 444 34567788888776543 2566778999999986654 2211
Q ss_pred cCCCCCCCCCCCccccCCccccCchHHHHHHHHhcccccceeeEEEccCCCCCCCcEEEEEeeccceEEE
Q 002267 363 SNDPKLHDTNGSMLNLSSLRVFDGGQQFLQTLLRMNFTGLSGEIRFDADKNLVNPAYDVLNIGGTGSRRI 432 (945)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~sG~v~fd~~g~~~~~~y~i~~~~~~~~~~V 432 (945)
.+.+..|+|++|.++||++|+. .....+.++++++++.|
T Consensus 279 ------------------------------~~~~~~~~G~tG~l~~~~~g~~-~R~l~~~~~~~G~~~~~ 317 (325)
T 2h4a_A 279 ------------------------------QVPGYRLSGLTGILSADTNCNV-ERDMTWYQYQDGAIVPV 317 (325)
T ss_dssp ------------------------------HSTTCCEEETTEEEEECTTCBE-EEECEEEEEETTEEEEC
T ss_pred ------------------------------hCCCCeeccCceeEEECCCCeE-EEeechhhccCCeEEEe
Confidence 1233579999999999999974 57788889988877665
No 37
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1
Probab=99.95 E-value=1.5e-27 Score=261.24 Aligned_cols=313 Identities=12% Similarity=0.094 Sum_probs=240.4
Q ss_pred eEEEEEEeccC---CccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChh
Q 002267 50 SVRIGALFTYD---SVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAIGPQSSG 126 (945)
Q Consensus 50 ~i~IG~l~~l~---~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~ 126 (945)
.+|||+++|+| +..|+..++|+++|++ |++++++++|++++|..++ +..+.+++|.+||||.+|+
T Consensus 2 V~kIG~l~PlSG~~a~~G~~~~~g~~lA~~----------g~~i~l~~~D~~~~~~~aa--~~~~~~~~v~~iiGp~~s~ 69 (327)
T 3ckm_A 2 VSQIGLLLPLSGDGQILGTTIQSGFNDAKG----------NSTIPVQVFDTSMNSVQDI--IAQAKQAGIKTLVGPLLKQ 69 (327)
T ss_dssp -CCEEEEECCSSTTHHHHHHHHHHHHHHHT----------TCCSCEEEEETTTSCHHHH--HHHHHHTTCCEEECCCSHH
T ss_pred EEEEEEEECCCCchHHHHHHHHHHHHHhCC----------CCCceEEEEeCCCCHHHHH--HHHHHHcCCeEEEEccccc
Confidence 37899999998 4568899999999963 5779999999999997653 3445566999999999999
Q ss_pred HHHHHHHhh-cccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEeCCcccchHHHHHH
Q 002267 127 IAHVISHVV-NELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDDYGRNGISVLGD 205 (945)
Q Consensus 127 ~~~~va~~~-~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~ 205 (945)
.+.+++... +...+|+++.++++. .. ..|++||+.+++..++.++++++...|+|++++++.|++||++..+.+++
T Consensus 70 ~~~a~~~~~~~~~~v~~~~~~~~~~-~~--~~~~~f~~~~~~~~~~~~~a~~~~~~g~k~~~ii~~~~~yg~~~~~~f~~ 146 (327)
T 3ckm_A 70 NLDVILADPAQIQGMDVLALNATPN-SR--AIPQLCYYGLSPEDEAESAANKMWNDGVRNPLVAMPQNDLGQRVGNAFNV 146 (327)
T ss_dssp HHHHHHHCGGGGTTCEEEESCCCTT-CC--CCTTEEECCCCHHHHHHHHHHHHHHTTCCSCEEEEESSHHHHHHHHHHHH
T ss_pred cchhhHHHHHhccCceEeccCcCcc-cc--cCCCeEEEecChHHHHHHHHHHHHhcCCeeEEEEecCChHHHHHHHHHHH
Confidence 888877655 455666666444333 22 35899999999999999999999889999999999999999999999999
Q ss_pred HHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcChhhHHHHHHHHHhCCCCCCCeEEEEeCCCccccCCC
Q 002267 206 ALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIATDWLPSVLDST 285 (945)
Q Consensus 206 ~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~~~~~~~~~ 285 (945)
.+++.|++|+..+.++ .++. ...+.+++..++|+|++...+.++..+.+++++.|+.. .++.++++.......
T Consensus 147 ~~~~~Gg~vv~~~~~~--~~~~--~~~~~~~~~~~~dai~~~~~~~~~~~i~~q~~~~g~~~---~~~~~~~~~~~~~~~ 219 (327)
T 3ckm_A 147 RWQQLAGTDANIRYYN--LPAD--VTYFVQENNSNTTALYAVASPTELAEMKGYLTNIVPNL---AIYASSRASASATNT 219 (327)
T ss_dssp HHHHHHSSCCEEEEES--STTH--HHHHHHHSCTTCCEEEECCCHHHHHHHHHHHTTTCTTC---EEEECGGGCCHHHHT
T ss_pred HHHHCCCeEEEEEECC--CCch--hhHHHHHhccCCcEEEEEcCHHHHHHHHHHHHhhhccC---CEEeeeccccccchh
Confidence 9999999999988886 3333 35567788899999999999999999999999988654 566666543321110
Q ss_pred CCCChhHHhhhcceeEEEe-e--cCCCchhhHHHHHHHhhhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhcCCcccc
Q 002267 286 EPVDIDTMNLLQGVVALRH-H--TPDTDLKKNFISRWKNLKYKENSPSGFNSYALYAYDSVWLVAHALDALLNEGGKFTF 362 (945)
Q Consensus 286 ~~~~~~~~~~~~G~~~~~~-~--~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~YDav~~la~Al~~~~~~~~~~~~ 362 (945)
.........|++.... + .++.+..++|.++|++.+ + +..+.+++|||+.+++++.+..
T Consensus 220 ---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~-----~--~~~~~AlgyDA~~l~~~l~~~~--------- 280 (327)
T 3ckm_A 220 ---NTDFIAQMNGVQFSDIPFFKDTNSPQYQKLAKSTGGEY-----Q--LMRLYAMGADAWLLINQFNELR--------- 280 (327)
T ss_dssp ---CHHHHHHTTTCEEEECGGGGCCCSHHHHHHHHHTTTCH-----H--HHHHHHHHHHHHHHHHTHHHHH---------
T ss_pred ---cchhhhhcCCeEEEcccccCCCCCHHHHHHHHHHHhhc-----C--CCchHHHHHHHHHHHHHHHHhc---------
Confidence 0222345677766543 3 345678888998888776 2 3346778999998876554431
Q ss_pred cCCCCCCCCCCCccccCCccccCchHHHHHHHHhcccccceeeEEEccCCCCCCCcEEEEEeeccceEEEEE
Q 002267 363 SNDPKLHDTNGSMLNLSSLRVFDGGQQFLQTLLRMNFTGLSGEIRFDADKNLVNPAYDVLNIGGTGSRRIGY 434 (945)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~f~G~sG~v~fd~~g~~~~~~y~i~~~~~~~~~~Vg~ 434 (945)
.+....|+|++|.++||+||+ ....+.+.++++++++.|..
T Consensus 281 ------------------------------~~~~~~f~G~tG~i~fd~~G~-~~r~l~~~~~~~G~~vpv~d 321 (327)
T 3ckm_A 281 ------------------------------QVPGYRLSGLTGILSADTNCN-VERDMTWYQYQDGAIVPVVD 321 (327)
T ss_dssp ------------------------------HSTTCCEEETTEEEEECTTCB-EEEECEEEEEETTEEEECC-
T ss_pred ------------------------------CCCCCCceeceEEEEECCCCC-CccccEEEEEECCEEEEccc
Confidence 122346999999999999997 45678889999988888753
No 38
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1
Probab=99.94 E-value=1.6e-26 Score=251.63 Aligned_cols=273 Identities=24% Similarity=0.399 Sum_probs=193.2
Q ss_pred CCCCceEEEecCccccccceeccC------CCCceeeeeHHHHHHHHHhCCCCccEEEEE---cCCCCC-CCCHHHHHHH
Q 002267 482 NNGMPLRIAVPNRVSYNEFVAKDK------SPPGVKGYCIDVFEAAVNLLPYPVPHNYIM---YGNGKR-NPIYNDIVQQ 551 (945)
Q Consensus 482 ~~g~~l~v~~~~~~~~~~~~~~~~------~~~~~~G~~~dll~~l~~~l~~~~~~~~~~---~~~~~~-~~~~~~~i~~ 551 (945)
.++++||||+... +||.+.+. +++++.||++||++++++++|++++++.++ ||.... +.+|++++.+
T Consensus 10 ~~~~~l~V~~~~~---~P~~~~~~~~~~~~~~g~~~G~~vdl~~~ia~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 86 (312)
T 1yae_A 10 LSNRSLIVTTILE---EPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRE 86 (312)
T ss_dssp TCSCEEEEEECCB---TTTBEECCCSSCCCGGGGEESHHHHHHHHHHHHHCCEEEEEECSSCCCCCBCTTTCCBCSHHHH
T ss_pred hcCceEEEEEecc---CCeeEEeccccccCCCceEEEEEHHHHHHHHHHcCCeEEEEecCCCccceeccCCCcchHHHHH
Confidence 3467899999543 66766541 257899999999999999999885555433 233222 5789999999
Q ss_pred HHcCcccEEEecEEEecCcceeEEecccccccceEEEEEccC-CCCCceeeeccCchhhHHHHHHHHHHHHhhhheeecc
Q 002267 552 VALNKFDAAVGDITIVTNRTKLVDFTQPYMESGLVVVAPVQK-LKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHR 630 (945)
Q Consensus 552 l~~g~~D~~~~~~~~t~~r~~~~dfs~p~~~~~~~~vv~~~~-~~~~~~~fl~PF~~~~W~~~~~~~~~~~~~~~~l~~~ 630 (945)
|.+|++|++++++++|++|.+.++||.||+..+.+++++++. ...++|.|+.||+.
T Consensus 87 l~~g~~D~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~~~~~~~~~~~~pf~~----------------------- 143 (312)
T 1yae_A 87 LIDHKADLAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNGGSL----------------------- 143 (312)
T ss_dssp HHTTSCSEECSSCBCCHHHHHHEEEEEEEEEECEEEEEEC----------------------------------------
T ss_pred HhCCCcCEEeecceechhhcceEEecceeeecceEEEEeCCccccccceeeeccccc-----------------------
Confidence 999999999999999999999999999999999999999876 56789999999981
Q ss_pred cCCCCCCCCccchhhHHHHHHHHhhccccCcccccchhhHHHHHHHHHHhhhhhhhhhhheeeeeccccCCCCChHHhhc
Q 002267 631 FNNEFRGPPSQQLVTIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLIS 710 (945)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~~~~dL~~ 710 (945)
.|+ |++++...|++++||..
T Consensus 144 ------------------------------~p~------------------------------tv~~~~~~i~~~~dL~g 163 (312)
T 1yae_A 144 ------------------------------VPR------------------------------GSERMESPIDSADDLAK 163 (312)
T ss_dssp -----------------------------------------------------------------------CCSHHHHHT
T ss_pred ------------------------------CCc------------------------------ccccccCCCCCHHHHhh
Confidence 011 45666678999999983
Q ss_pred C-CCCeEEeeCchHHHHHHHhhccc-----------cccceecCCHHHHHHHHhcCCCCCceeEEecchhhHHHHhccCC
Q 002267 711 S-TEPIGVQDGSFAWNYLVDELKIA-----------ESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTN 778 (945)
Q Consensus 711 ~-~~~v~~~~~s~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~ 778 (945)
. +.+||+..++....++.+. +.. ..+++.+.+.++++++|.+ |+ |+++.+...+.+++++ +
T Consensus 164 ~~~~~vg~v~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----G~-Da~i~~~~~~~~~~~~-~ 236 (312)
T 1yae_A 164 QTKIEYGAVEDGATMTFFKKS-KISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLT----SD-YAFLMESTTIEFVTQR-N 236 (312)
T ss_dssp CSSSEEECBTTSHHHHHHHHC-CBHHHHHHHHHHHHTHHHHCBSSHHHHHHHHHH----SS-EEEEEEHHHHHHHHTT-C
T ss_pred ccCceEEEEeCChHHHHHHhc-cCchHHHHHHHHHhcCCCcccCCHHHHHHHHHc----CC-cEEEeccHHHHHHHhc-C
Confidence 3 2268876665556666431 111 1245678999999999999 89 9999999999999888 6
Q ss_pred ccEEEeCccccccceEEEecCCCcchHHHHHHHHhccccccHHHHHHHhcCCCCCCCCCCCCCCCCCccccc
Q 002267 779 CEFRTVGQEFTKSGWGFAFQRDSPLAIDLSTAILQLSENGDLQKIHNKWLTYNECSMDLSPADGGGSRLSLK 850 (945)
Q Consensus 779 ~~~~~~~~~~~~~~~~~~~~k~spl~~~i~~~i~~l~e~G~~~~i~~~w~~~~~c~~~~~~~~~~~~~L~l~ 850 (945)
|++.++++.+...+++++++|++||++.||++|.+|.++|.+++|.+||+....|...... ++..++++
T Consensus 237 ~~l~~~~~~~~~~~~~~a~~k~~~l~~~in~~l~~l~~~G~~~~i~~kw~~~~~c~~~~~~---~~~~~~~~ 305 (312)
T 1yae_A 237 CNLTQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNGCPEEESK---EASALGVQ 305 (312)
T ss_dssp TTEEEESSCSSCEEEEEEEETTCSSHHHHHHHHHHHHHHTHHHHHHHHHHCCSCC-----------------
T ss_pred CCEEEecccccccceEEEEeCCCCcHHHHHHHHHHHHHcCCHHHHHhhhcCCCCCCCCCCc---cchhhhhh
Confidence 9999998888888999999999999999999999999999999999999998899876544 34445443
No 39
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ...
Probab=99.91 E-value=2e-24 Score=228.30 Aligned_cols=233 Identities=24% Similarity=0.418 Sum_probs=192.5
Q ss_pred CCCceEEEecCccccccceeccCC------CCceeeeeHHHHHHHHHhCCCCccEEEEEc---CCCCC-CCCHHHHHHHH
Q 002267 483 NGMPLRIAVPNRVSYNEFVAKDKS------PPGVKGYCIDVFEAAVNLLPYPVPHNYIMY---GNGKR-NPIYNDIVQQV 552 (945)
Q Consensus 483 ~g~~l~v~~~~~~~~~~~~~~~~~------~~~~~G~~~dll~~l~~~l~~~~~~~~~~~---~~~~~-~~~~~~~i~~l 552 (945)
.+++|||++... +||.+.+.. ++.+.||++||++++++++|++++++.++. +.... +++|.+++.+|
T Consensus 2 ~~~~l~v~~~~~---~P~~~~~~~~~~~~~~g~~~G~~vdl~~~ia~~lg~~~~~~~~p~~~~g~~~~~~~~~~~~~~~l 78 (259)
T 3g3k_A 2 SNRSLIVTTILE---EPYVLFKKSDKPLYGNDRFEGYCIDLLRELSTHLGFTYEIRLVEDGKYGAQDDVNGQWNGMVREL 78 (259)
T ss_dssp -CCCEEEEECCB---TTTBEECCCSSCCCGGGGEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCBCTTTCCBCHHHHHH
T ss_pred CCcEEEEEEecC---CCeEEEeecccccCCCceeeeEHHHHHHHHHHHcCCeEEEEECCCCCcCcccCCCCcchHHHHHH
Confidence 357899999544 566665542 489999999999999999998866665542 21111 46899999999
Q ss_pred HcCcccEEEecEEEecCcceeEEecccccccceEEEEEccCCCCCceeeeccCchhhHHHHHHHHHHHHhhhheeecccC
Q 002267 553 ALNKFDAAVGDITIVTNRTKLVDFTQPYMESGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFN 632 (945)
Q Consensus 553 ~~g~~D~~~~~~~~t~~r~~~~dfs~p~~~~~~~~vv~~~~~~~~~~~fl~PF~~~~W~~~~~~~~~~~~~~~~l~~~~~ 632 (945)
.+|++|++++++++|++|.+.++||.||+..+.++++++..
T Consensus 79 ~~g~~D~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~--------------------------------------- 119 (259)
T 3g3k_A 79 IDHKADLAVAPLAITYVREEVIDFSKPFMTLGISILYRKGT--------------------------------------- 119 (259)
T ss_dssp HTTSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEESSS---------------------------------------
T ss_pred hcCcccEEEeeeEecccccceEeeeeeeeeCCEEEEEeCCc---------------------------------------
Confidence 99999999999999999999999999999999999998765
Q ss_pred CCCCCCCccchhhHHHHHHHHhhccccCcccccchhhHHHHHHHHHHhhhhhhhhhhheeeeeccccCCCCChHHhhcCC
Q 002267 633 NEFRGPPSQQLVTIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISST 712 (945)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~~~~dL~~~~ 712 (945)
+|++++||. +
T Consensus 120 --------------------------------------------------------------------~i~~~~dL~--g 129 (259)
T 3g3k_A 120 --------------------------------------------------------------------PIDSADDLA--K 129 (259)
T ss_dssp --------------------------------------------------------------------SCCSHHHHH--T
T ss_pred --------------------------------------------------------------------cccCHHHhc--c
Confidence 588999998 4
Q ss_pred CC---eEEeeCchHHHHHHHhhccc-----------cccceecCCHHHHHHHHhcCCCCCceeEEecchhhHHHHhccCC
Q 002267 713 EP---IGVQDGSFAWNYLVDELKIA-----------ESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTN 778 (945)
Q Consensus 713 ~~---v~~~~~s~~~~~l~~~~~~~-----------~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~ 778 (945)
.+ +|+..++....++.+. +.. ...++.+.+.++++++|.+ |+ |+++.+...+.+++++ .
T Consensus 130 ~~~~~ig~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----g~-da~i~~~~~~~~~~~~-~ 202 (259)
T 3g3k_A 130 QTKIEYGAVEDGATMTFFKRS-KISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLT----SD-YAFLMESTTIEFVTQR-N 202 (259)
T ss_dssp CSSSEEEEETTSHHHHHHHHC-CSHHHHHHHHHHHHTHHHHEESSHHHHHHHHHH----SS-EEEEEEHHHHHHHHHH-C
T ss_pred CCCceEEEecCcHHHHHHhhc-cchhHHHHHHHHHhcCCCcccCCHHHHHHHHHh----CC-eEEEechHHHHHHhcC-C
Confidence 44 8888777777766532 111 1234667899999999999 78 9999999999999888 8
Q ss_pred ccEEEeCccccccceEEEecCCCcchHHHHHHHHhccccccHHHHHHHhcCCCCCC
Q 002267 779 CEFRTVGQEFTKSGWGFAFQRDSPLAIDLSTAILQLSENGDLQKIHNKWLTYNECS 834 (945)
Q Consensus 779 ~~~~~~~~~~~~~~~~~~~~k~spl~~~i~~~i~~l~e~G~~~~i~~~w~~~~~c~ 834 (945)
|++.+++..+...+++++++|++||++.||++|.+|.++|.+++|.+|||....|+
T Consensus 203 ~~l~~~~~~~~~~~~~~a~~k~~~l~~~in~~l~~l~~~G~~~~i~~kw~~~~~c~ 258 (259)
T 3g3k_A 203 CNLTQIGGLIDSKGYGVGTPMGSPYRDKITLAILKLQEQGKLHMMKEKWWRGNGCP 258 (259)
T ss_dssp TTEEEESSCSSCEEECCEEETTCTHHHHHHHHHHHHHHTC-CHHHHHHHHCC--CC
T ss_pred ceEEEecccceeeeEEEEECCCCccHHHHHHHHHHHHhcChHHHHHHhhcCCCCCC
Confidence 99999998888889999999999999999999999999999999999999987886
No 40
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A*
Probab=99.91 E-value=4.2e-25 Score=236.64 Aligned_cols=248 Identities=21% Similarity=0.407 Sum_probs=190.5
Q ss_pred ccCCCCceEEEecCccccccceeccC---CCCceeeeeHHHHHHHHHhCCCCccEEEEEcCCCC----CCCCHHHHHHHH
Q 002267 480 FPNNGMPLRIAVPNRVSYNEFVAKDK---SPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGK----RNPIYNDIVQQV 552 (945)
Q Consensus 480 ~~~~g~~l~v~~~~~~~~~~~~~~~~---~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~----~~~~~~~~i~~l 552 (945)
.|.+|++|||||+..++|++|....+ +.+++.|+++|+++++++++|++ |+++.+.++. .+++|++++.+|
T Consensus 24 ~~~~~~~lrvgv~~~~~~~~~~~~~~~~~~~~~~~G~~~dl~~~i~~~lg~~--~~~~~~~~~~~g~~~~~~~~~~~~~l 101 (284)
T 2a5s_A 24 DPLTETCVRNTVPCRKFVKINNSTNEGMNVKKCCKGFCIDILKKLSRTVKFT--YDLYLVTNGKHGKKVNNVWNGMIGEV 101 (284)
T ss_dssp CCC-CCCCTTCEEEEEEEESSSSSSCEEEEEEEEESHHHHHHHHHHHHHTCC--EEEEECCSSSSCCEETTEECHHHHHH
T ss_pred CCCCCccccccccccccccccccccCCCCCcceeeEEhHHHHHHHHHHCCCC--EEEEEccCCccCcccCCCHHHHHHHH
Confidence 35689999999998888888854331 12478999999999999999987 5555544322 357899999999
Q ss_pred HcCcccEEEecEEEecCcceeEEecccccccceEEEEEccCCCCCceeeeccCchhhHHHHHHHHHHHHhhhheeecccC
Q 002267 553 ALNKFDAAVGDITIVTNRTKLVDFTQPYMESGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFN 632 (945)
Q Consensus 553 ~~g~~D~~~~~~~~t~~r~~~~dfs~p~~~~~~~~vv~~~~~~~~~~~fl~PF~~~~W~~~~~~~~~~~~~~~~l~~~~~ 632 (945)
.+|++|+++++++++++|.+.++||.||+.++.+++++++....++.
T Consensus 102 ~~g~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~~~~~~~--------------------------------- 148 (284)
T 2a5s_A 102 VYQRAVMAVGSLTINEERSEVVDFSVPFVETGISVMVSRGTQVTGLS--------------------------------- 148 (284)
T ss_dssp HTTSCSEECSSCBCCHHHHTTEEECCCCEEECEEEEEETTCCCCSTT---------------------------------
T ss_pred hcCCcCEEEEEEEEeccccceEEeccCchhcCEEEEEECCccccccc---------------------------------
Confidence 99999999999999999999999999999999999999765211100
Q ss_pred CCCCCCCccchhhHHHHHHHHhhccccCcccccchhhHHHHHHHHHHhhhhhhhhhhheeeeeccccCCCCChHHhhcCC
Q 002267 633 NEFRGPPSQQLVTIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISST 712 (945)
Q Consensus 633 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~~~~dL~~~~ 712 (945)
....++++||. .+
T Consensus 149 ------------------------------------------------------------------dl~~~~~~~l~-~~ 161 (284)
T 2a5s_A 149 ------------------------------------------------------------------DKKFQRPHDYS-PP 161 (284)
T ss_dssp ------------------------------------------------------------------SHHHHSGGGSS-SC
T ss_pred ------------------------------------------------------------------ccccCChhHcC-CC
Confidence 00011233332 26
Q ss_pred CCeEEeeCchHHHHHHHhhccccccceec--CCHHHHHHHHhcCCCCCceeEEecchhhHHHHhccC-CccEEEeC--cc
Q 002267 713 EPIGVQDGSFAWNYLVDELKIAESRLVKL--KNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKT-NCEFRTVG--QE 787 (945)
Q Consensus 713 ~~v~~~~~s~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~-~~~~~~~~--~~ 787 (945)
.+||+..++.....+.+.......+++.+ .+.++++++|.+ |++|+++.+...+.+++++. .|++.+++ ..
T Consensus 162 ~~vg~v~~~s~~~~l~~~~~~~~~~i~~~~~~~~~~~l~~l~~----G~vDa~i~d~~~~~~~~~~~~~~~l~~~~~~~~ 237 (284)
T 2a5s_A 162 FRFGTVPNGSTERNIRNNYPYMHQYMTRFNQRGVEDALVSLKT----GKLDAFIYDAAVLNYKAGRDEGCKLVTIGSGYI 237 (284)
T ss_dssp CCEECCTTSHHHHHHHTTCHHHHHHHGGGCCSSHHHHHHHHHT----TSCSEEEEEHHHHHHHHHTCTTSCEEEEECCCG
T ss_pred ceEEEEeCCchHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHc----CCeeEEEEchHHHHHHHhcCCCCCEEEeCCccc
Confidence 78997654444555543221111235555 799999999999 99999999999999988773 47888874 56
Q ss_pred ccccceEEEecCCCcchHHHHHHHHhccccccHHHHHHHhcCCCCCC
Q 002267 788 FTKSGWGFAFQRDSPLAIDLSTAILQLSENGDLQKIHNKWLTYNECS 834 (945)
Q Consensus 788 ~~~~~~~~~~~k~spl~~~i~~~i~~l~e~G~~~~i~~~w~~~~~c~ 834 (945)
+...+++++++|+++|++.||++|.++.++|.+++|.+||+.. .|+
T Consensus 238 ~~~~~~~~a~~k~~~l~~~ln~~l~~l~~~g~~~~i~~kw~~~-~c~ 283 (284)
T 2a5s_A 238 FATTGYGIALQKGSPWKRQIDLALLQFVGDGEMEELETLWLTG-ICH 283 (284)
T ss_dssp GGCEEECCEEETTCTTHHHHHHHHHHHHHHTHHHHHHHHHTCC-CCC
T ss_pred cccCceEEEecCCCHHHHHHHHHHHHHHhCChHHHHHHHhhhc-cCC
Confidence 7778899999999999999999999999999999999999984 675
No 41
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=99.91 E-value=2.8e-24 Score=231.03 Aligned_cols=233 Identities=20% Similarity=0.375 Sum_probs=187.4
Q ss_pred CceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCccEEEEEcCCCC----------CCCCHHHHHHHHHc
Q 002267 485 MPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGK----------RNPIYNDIVQQVAL 554 (945)
Q Consensus 485 ~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~----------~~~~~~~~i~~l~~ 554 (945)
+.|+|++ ...|+||...+. ++++.||++||++++++++|++ |+++...+++ .+++|++++++|.+
T Consensus 41 ~~l~vg~--~~~~~P~~~~~~-~g~~~G~~vDll~~ia~~lg~~--~~~~~~~d~~~g~~~~~~~~~~~~w~~~~~~l~~ 115 (292)
T 1pb7_A 41 KVICTGP--NDTSPGSPRHTV-PQCCYGFCIDLLIKLARTMNFT--YEVHLVADGKFGTQERVNNSNKKEWNGMMGELLS 115 (292)
T ss_dssp CEEEEEE--C--------CEE-EEEEESHHHHHHHHHHHHHTCC--EEEEECTTCCCCCEEECTTSSCEEECHHHHHHHH
T ss_pred ceeeccc--CCCCCCcccccc-ccCcceeHHHHHHHHHHHcCce--EEEEEecCCcccccccccccccCcHHHHHHHHHc
Confidence 5788888 455777766554 6789999999999999999988 5555543221 12489999999999
Q ss_pred CcccEEEecEEEecCcceeEEecccccccceEEEEEccCCCCCceeeeccCchhhHHHHHHHHHHHHhhhheeecccCCC
Q 002267 555 NKFDAAVGDITIVTNRTKLVDFTQPYMESGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNE 634 (945)
Q Consensus 555 g~~D~~~~~~~~t~~r~~~~dfs~p~~~~~~~~vv~~~~~~~~~~~fl~PF~~~~W~~~~~~~~~~~~~~~~l~~~~~~~ 634 (945)
|++|++++++++|++|.+.++||.||+..+.+++++++.
T Consensus 116 g~~D~~~~~~~~t~~R~~~~~fs~Py~~~~~~i~~~~~~----------------------------------------- 154 (292)
T 1pb7_A 116 GQADMIVAPLTINNERAQYIEFSKPFKYQGLTILVKKGT----------------------------------------- 154 (292)
T ss_dssp TSCSEECSSCBCCHHHHTTEEECSCSEEEEEEEEEETTC-----------------------------------------
T ss_pred CCcCEEEeeeEecHHHhcceEechhhHhcCeEEEEECCc-----------------------------------------
Confidence 999999999999999999999999999999999998764
Q ss_pred CCCCCccchhhHHHHHHHHhhccccCcccccchhhHHHHHHHHHHhhhhhhhhhhheeeeeccccCCCCChHHhhcCCC-
Q 002267 635 FRGPPSQQLVTIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISSTE- 713 (945)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~~~~dL~~~~~- 713 (945)
.+++++||...+.
T Consensus 155 ------------------------------------------------------------------~i~~~~dl~~~g~~ 168 (292)
T 1pb7_A 155 ------------------------------------------------------------------RITGINDPRLRNPS 168 (292)
T ss_dssp ------------------------------------------------------------------CCCSTTCHHHHSCB
T ss_pred ------------------------------------------------------------------CCCCCcCccccCcc
Confidence 3556666653232
Q ss_pred --C-eEEeeCchHHHHHHHhhcc----ccccceecCCHHHHHHHHhcCCCCCceeEEecchhhHHHHhccCCccEEEeCc
Q 002267 714 --P-IGVQDGSFAWNYLVDELKI----AESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVGQ 786 (945)
Q Consensus 714 --~-v~~~~~s~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 786 (945)
. +|+..++....++.+.... +..+++.+.+.++++++|.+ |++|+++.+...+.|++++ +|++.+++.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----G~vDa~i~d~~~~~~~~~~-~~~l~~~~~ 243 (292)
T 1pb7_A 169 DKFIYATVKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRD----NKLHAFIWDSAVLEFEASQ-KCDLVTTGE 243 (292)
T ss_dssp TTBCEECBTTSHHHHHHHTCGGGHHHHHHHTTTCBSSHHHHHHHHHT----TSCSEEEEEHHHHHHHHHH-CTTEEECSS
T ss_pred cceEEEEEcCchHHHHhhhcccHHHHHHHHHhhcCCCHHHHHHHHHc----CCceEEEEcHHHHHHHHhc-CCCEEEcCc
Confidence 3 5777888777776542211 12356678999999999999 8999999999999999888 799999998
Q ss_pred cccccceEEEecCCCcchHHHHHHHHhccccccHHHHHHHhcCCCCCC
Q 002267 787 EFTKSGWGFAFQRDSPLAIDLSTAILQLSENGDLQKIHNKWLTYNECS 834 (945)
Q Consensus 787 ~~~~~~~~~~~~k~spl~~~i~~~i~~l~e~G~~~~i~~~w~~~~~c~ 834 (945)
.+...+++++++|++||++.||++|.+|.++|.+++|.+||+....|.
T Consensus 244 ~~~~~~~~ia~~k~~~l~~~in~al~~l~~~G~~~~l~~kw~~~~~c~ 291 (292)
T 1pb7_A 244 LFFRSGFGIGMRKDSPWKQNVSLSILKSHENGFMEDLDKTWVRYQECD 291 (292)
T ss_dssp CSEEEEECCEEETTCSSHHHHHHHHHHHHHSSHHHHHHHHHTSSSCCC
T ss_pred cccCCceEEEEeCCCHHHHHHHHHHHHHHhCCCHHHHHHhhCCCCCCC
Confidence 888889999999999999999999999999999999999999988886
No 42
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=99.90 E-value=9.7e-24 Score=227.22 Aligned_cols=216 Identities=23% Similarity=0.433 Sum_probs=179.2
Q ss_pred ceeeeeHHHHHHHHHhCCCCccEEEEEcCCCC----CCCCHHHHHHHHHcCcccEEEecEEEecCcceeEEecccccccc
Q 002267 509 GVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGK----RNPIYNDIVQQVALNKFDAAVGDITIVTNRTKLVDFTQPYMESG 584 (945)
Q Consensus 509 ~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~----~~~~~~~~i~~l~~g~~D~~~~~~~~t~~r~~~~dfs~p~~~~~ 584 (945)
++.||++||++++++++|++ ++++.+.+++ .+++|++++++|.+|++|++++++++|++|.+.++||.||+..+
T Consensus 67 ~~~G~~vdll~~ia~~lg~~--~~~~~~~~~~~g~~~~~~w~~~~~~l~~g~~D~~~~~~~~t~eR~~~~~fs~P~~~~~ 144 (294)
T 2rc8_A 67 CCYGYCIDLLEQLAEDMNFD--FDLYIVGDGKYGAWKNGHWTGLVGDLLSGTANMAVTSFSINTARSQVIDFTSPFFSTS 144 (294)
T ss_dssp EEESHHHHHHHHHHHHHTEE--EEEEECTTCCCCCEETTEECHHHHHHHHTSCSEECSSCBCCHHHHTTSEECSCSEEEE
T ss_pred CceEEhHHHHHHHHHHcCCc--EEEEECCCCcccccCCCCHHHHHHHHHCCCcCEEEeccccCHhHhceEEEccchHhcc
Confidence 47899999999999999987 5555443321 35789999999999999999999999999999999999999999
Q ss_pred eEEEEEccCCCCCceeeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCCccchhhHHHHHHHHhhccccCcccc
Q 002267 585 LVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEFRGPPSQQLVTIFWFSFSTMFFSHRENTVS 664 (945)
Q Consensus 585 ~~~vv~~~~~~~~~~~fl~PF~~~~W~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~s 664 (945)
.+++++++.
T Consensus 145 ~~i~~~~~~----------------------------------------------------------------------- 153 (294)
T 2rc8_A 145 LGILVRTRG----------------------------------------------------------------------- 153 (294)
T ss_dssp EEEEEETTS-----------------------------------------------------------------------
T ss_pred eEEEEECCC-----------------------------------------------------------------------
Confidence 999998765
Q ss_pred cchhhHHHHHHHHHHhhhhhhhhhhheeeeeccccCCCCChHHhh----cCCCCeEEeeCchHHHHHHHhhcccc--ccc
Q 002267 665 SLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLI----SSTEPIGVQDGSFAWNYLVDELKIAE--SRL 738 (945)
Q Consensus 665 ~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~~~~dL~----~~~~~v~~~~~s~~~~~l~~~~~~~~--~~~ 738 (945)
..|++++||. ..+.++|+..|+....++.+...... .+.
T Consensus 154 -----------------------------------~~i~~~~dL~~~~~~~g~~vg~~~gs~~~~~l~~~~~~~~~~i~~ 198 (294)
T 2rc8_A 154 -----------------------------------TELSGIHDPKLHHPSQGFRFGTVRESSAEDYVRQSFPEMHEYMRR 198 (294)
T ss_dssp -----------------------------------CCCCSTTCHHHHSCCTTCCEECBTTSHHHHHHHHHCHHHHHHHGG
T ss_pred -----------------------------------CCcCChhhhhhcCcccCeEEEEEcCChHHHHHHHHHHHHHHHHHH
Confidence 3567778886 24788999999998888865421111 123
Q ss_pred eecCCHHHHHHHHhcCCCCCceeEEecchhhHHHHhccC-CccEEEeCccccccceEEEecCCCcchHHHHHHHHhcccc
Q 002267 739 VKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKT-NCEFRTVGQEFTKSGWGFAFQRDSPLAIDLSTAILQLSEN 817 (945)
Q Consensus 739 ~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~k~spl~~~i~~~i~~l~e~ 817 (945)
+.+.+.++++++|.++ +|++|+++.+...+.+++++. .|++.++++.+...+++++++|+++|++.||++|.+|.++
T Consensus 199 ~~~~~~~~~~~~l~~~--~GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ia~~k~~~l~~~in~al~~l~~~ 276 (294)
T 2rc8_A 199 YNVPATPDGVQYLKND--PEKLDAFIMDKALLDYEVSIDADCKLLTVGKPFAIEGYGIGLPPNSPLTSNISELISQYKSH 276 (294)
T ss_dssp GCBSSHHHHHHHHHSS--SCCCSEEEEEHHHHHHHHHTCSSSCEEECSCCEEEEEECCEECTTCTHHHHHHHHHHHHHHT
T ss_pred hcCCCHHHHHHHHHhc--cCceeEEEecHHHHHHHHhhCCCCCEEEcCCcccccceEEEecCCCHHHHHHHHHHHHHHhC
Confidence 3578999999999873 368999999999999988763 5789999988888899999999999999999999999999
Q ss_pred ccHHHHHHHhcCCCCCC
Q 002267 818 GDLQKIHNKWLTYNECS 834 (945)
Q Consensus 818 G~~~~i~~~w~~~~~c~ 834 (945)
|.+++|.+||+....|+
T Consensus 277 G~~~~l~~kw~~~~~c~ 293 (294)
T 2rc8_A 277 GFMDVLHDKWYKVVPCG 293 (294)
T ss_dssp THHHHHHHHHCCC----
T ss_pred CCHHHHHHhhcCCCCCC
Confidence 99999999999988886
No 43
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=99.89 E-value=4.6e-23 Score=215.42 Aligned_cols=220 Identities=21% Similarity=0.301 Sum_probs=188.4
Q ss_pred CceEEEecCccccccceecc--CCCCceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHHHHHHHHHcCcccEEEe
Q 002267 485 MPLRIAVPNRVSYNEFVAKD--KSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVG 562 (945)
Q Consensus 485 ~~l~v~~~~~~~~~~~~~~~--~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~ 562 (945)
+.|+||+ .+.|+||.+.+ ++++.+.||++||++++++++|++ +++++ ..|++++.+|.+|++|++++
T Consensus 12 g~L~Vg~--~~~~pP~~~~~~~d~~g~~~G~~vdl~~~ia~~lg~~--~~~~~-------~~~~~~~~~l~~g~~d~~~~ 80 (243)
T 4h5g_A 12 GKLVVAT--SPDYAPFEFQSLVDGKNQVVGADIDMAQAIADELGVK--LEILS-------MSFDNVLTSLQTGKADLAVA 80 (243)
T ss_dssp TEEEEEE--CCCBTTTBEEEEETTEEEEESHHHHHHHHHHHHHTSE--EEEEE-------CCGGGHHHHHHTTSCSEECS
T ss_pred CEEEEEE--CCCCCCcEeeeccCCCCcEEEeHHHHHHHHHHHhCCc--eEEec-------ccHHHHHHHHHcCCCCcccc
Confidence 5799999 56789998753 346889999999999999999977 55554 45999999999999999999
Q ss_pred cEEEecCcceeEEecccccccceEEEEEccCCCCCceeeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCCccc
Q 002267 563 DITIVTNRTKLVDFTQPYMESGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEFRGPPSQQ 642 (945)
Q Consensus 563 ~~~~t~~r~~~~dfs~p~~~~~~~~vv~~~~~~~~~~~fl~PF~~~~W~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 642 (945)
++++|++|.+.++||.||+..+.++++++...
T Consensus 81 ~~~~t~eR~~~~~fs~py~~~~~~~~v~~~~~------------------------------------------------ 112 (243)
T 4h5g_A 81 GISATDERKEVFDFSIPYYENKISFLVHKADV------------------------------------------------ 112 (243)
T ss_dssp SCBCCHHHHTTEEECSCSBCCCEEEEEEGGGT------------------------------------------------
T ss_pred cccCChhHccEEEccCccccCccccccccccc------------------------------------------------
Confidence 99999999999999999999999999987651
Q ss_pred hhhHHHHHHHHhhccccCcccccchhhHHHHHHHHHHhhhhhhhhhhheeeeeccccCCCCChHHhhcCCCCeEEeeCch
Q 002267 643 LVTIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISSTEPIGVQDGSF 722 (945)
Q Consensus 643 ~~~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~~~~dL~~~~~~v~~~~~s~ 722 (945)
..+++++||. |++||+..|+.
T Consensus 113 ---------------------------------------------------------~~~~~~~dl~--g~~i~v~~g~~ 133 (243)
T 4h5g_A 113 ---------------------------------------------------------EKYKDLTSLE--SANIAAQKGTV 133 (243)
T ss_dssp ---------------------------------------------------------TTCCSHHHHH--TSEEEEETTSH
T ss_pred ---------------------------------------------------------ccccccccCC--CCEEEecCCcH
Confidence 3678999997 89999999999
Q ss_pred HHHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceeEEecchhhHHHHhccCCccEEE--eC-ccccccceEEEecC
Q 002267 723 AWNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTNCEFRT--VG-QEFTKSGWGFAFQR 799 (945)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~k 799 (945)
...++.+.. +..+++.+++.++++++|.+ |++|+++.+.....+++.+ +..+.. +. ......+++++++|
T Consensus 134 ~~~~l~~~~--~~~~i~~~~~~~~~~~~l~~----GrvD~~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~k 206 (243)
T 4h5g_A 134 PESMVKEQL--PKAQLTSLTNMGEAVNELQA----GKIDAVHMDEPVALSYAAK-NAGLAVATVSLKMKDGDANAVALRK 206 (243)
T ss_dssp HHHHHHHHC--TTSEEEEESCHHHHHHHHHH----TSCSEEEEEHHHHHHHHHH-CTTEEECSCCCCCCSSCCBCCEEES
T ss_pred HHHHHHHhc--ccceeEEeCCHHHHHHHHHc----CCccEEEecHHHHHHHHHH-CCCCceeeccCCcccCceEEEEEeC
Confidence 888886543 55678899999999999999 9999999999888887776 443332 22 34445678999999
Q ss_pred CCc-chHHHHHHHHhccccccHHHHHHHhcC
Q 002267 800 DSP-LAIDLSTAILQLSENGDLQKIHNKWLT 829 (945)
Q Consensus 800 ~sp-l~~~i~~~i~~l~e~G~~~~i~~~w~~ 829 (945)
++| |++.||++|.+|.++|.+++|.+||+.
T Consensus 207 ~~~~L~~~~n~aL~~l~~dG~~~~i~~Kw~~ 237 (243)
T 4h5g_A 207 NSDDLKEVVDKVIQKLKDEGTYQSYLEKAAS 237 (243)
T ss_dssp SCHHHHHHHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 998 999999999999999999999999987
No 44
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=99.89 E-value=1.8e-23 Score=218.62 Aligned_cols=225 Identities=13% Similarity=0.174 Sum_probs=186.5
Q ss_pred CCCceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhC-CCCccEEEEEcCCCCCCCCHHHHHHHHHcCcccEEE
Q 002267 483 NGMPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLL-PYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAV 561 (945)
Q Consensus 483 ~g~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~l~~~l-~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~ 561 (945)
+.++|+||+ .+.|+||.+.+. ++.+.||++||+++++++| |++ +++++ ..|++++..|.+|++|+++
T Consensus 7 ~~~tl~vg~--~~~~pP~~~~d~-~G~~~G~~vdl~~~ia~~l~g~~--~~~~~-------~~~~~~~~~l~~g~~D~~~ 74 (243)
T 4gvo_A 7 KVQTITVGT--GTQFPNVCFLDE-NGKLTGYDVELVKEIDKRLPGYK--FKFKT-------MDFSNLLVSLGAGKVDIVA 74 (243)
T ss_dssp -CEEEEEEE--CSEETTTEEECT-TSCEESHHHHHHHHHHHTCTTEE--EEEEE-------CCGGGHHHHHHTTSCSEEC
T ss_pred cCCeEEEEE--CCCCCCeEEECC-CCcEEEhHHHHHHHHHHhccCCe--EEEEE-------CCHHHHHHHHHCCCCCEec
Confidence 457899999 567999998875 7899999999999999998 877 55554 4599999999999999999
Q ss_pred ecEEEecCcceeEEecccccccceEEEEEccCCCCCceeeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCCcc
Q 002267 562 GDITIVTNRTKLVDFTQPYMESGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEFRGPPSQ 641 (945)
Q Consensus 562 ~~~~~t~~r~~~~dfs~p~~~~~~~~vv~~~~~~~~~~~fl~PF~~~~W~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 641 (945)
+++++|++|.+.++||.||+.....+++.++.
T Consensus 75 ~~~~~t~eR~~~~~fs~p~~~~~~~~~~~~~~------------------------------------------------ 106 (243)
T 4gvo_A 75 HQMEKSKEREKKFLFNDVAYNNFPLQLTVLDS------------------------------------------------ 106 (243)
T ss_dssp SCCBCCHHHHHHSEECSSCCEECCEEEEEETT------------------------------------------------
T ss_pred ccCCCCHHHhhhhhhhhhhcccccceEEEecc------------------------------------------------
Confidence 99999999999999999987766555444333
Q ss_pred chhhHHHHHHHHhhccccCcccccchhhHHHHHHHHHHhhhhhhhhhhheeeeeccccCCCCChHHhhcCCCCeEEeeCc
Q 002267 642 QLVTIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISSTEPIGVQDGS 721 (945)
Q Consensus 642 ~~~~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~~~~dL~~~~~~v~~~~~s 721 (945)
...+++++||. |++||+..|+
T Consensus 107 ---------------------------------------------------------~~~~~~~~dL~--g~~v~v~~gs 127 (243)
T 4gvo_A 107 ---------------------------------------------------------NNSINSTKDLA--GKRVITSATS 127 (243)
T ss_dssp ---------------------------------------------------------CCSCSSGGGGT--TCEEEECTTC
T ss_pred ---------------------------------------------------------ccccCchHHhc--CCeEEEecCc
Confidence 14788999996 8999999998
Q ss_pred hHHHHHHHhh---ccccccceecCCHHHHHHHHhcCCCCCceeEEecchhhHHHHhccCCccEEEeCccccccceEEEec
Q 002267 722 FAWNYLVDEL---KIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVGQEFTKSGWGFAFQ 798 (945)
Q Consensus 722 ~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (945)
....++.... .........+.+.++++++|.. |++|+++.+...+.+..++...++.++++.+...+++++++
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~----GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (243)
T 4gvo_A 128 NGALVLKKINEEQGNNFEIAYEGQGSNDTANQLKT----GRADATISTPFAVDFQNKTSAIKEKVVGDVLSNAKVYFMLG 203 (243)
T ss_dssp HHHHHHHHHHHHTTSCSEEEECCSGGGSHHHHHHH----TSCSBEEECHHHHHHHHHTCSSCEEEEEEEEECCEECCEEC
T ss_pred hHHHHHHHHHHhccccceeccccCChHHHHHHHHc----CCccEEEccHHHHHHHHhhCCCceEEeccCCCCCcEEEEEe
Confidence 7776664321 1221233456788899999999 99999999999998888875557888888888889999999
Q ss_pred CCCc-chHHHHHHHHhccccccHHHHHHHhcCC
Q 002267 799 RDSP-LAIDLSTAILQLSENGDLQKIHNKWLTY 830 (945)
Q Consensus 799 k~sp-l~~~i~~~i~~l~e~G~~~~i~~~w~~~ 830 (945)
|++| |++.||++|.+|.++|.+++|.+|||+.
T Consensus 204 k~~~~l~~~in~~l~~l~~~G~~~~i~~kw~g~ 236 (243)
T 4gvo_A 204 KDETKLSKKVDEALQSIIDDGTLKKLSEKWLGA 236 (243)
T ss_dssp TTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHCG
T ss_pred CCCHHHHHHHHHHHHHHHhCcHHHHHHHHHCCC
Confidence 9988 9999999999999999999999999973
No 45
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ...
Probab=99.88 E-value=2.4e-22 Score=212.87 Aligned_cols=232 Identities=24% Similarity=0.433 Sum_probs=187.5
Q ss_pred CCceEEEecCccccccceeccCC------CCceeeeeHHHHHHHHHhCCCCccEEEEE---cCCCCCCC-CHHHHHHHHH
Q 002267 484 GMPLRIAVPNRVSYNEFVAKDKS------PPGVKGYCIDVFEAAVNLLPYPVPHNYIM---YGNGKRNP-IYNDIVQQVA 553 (945)
Q Consensus 484 g~~l~v~~~~~~~~~~~~~~~~~------~~~~~G~~~dll~~l~~~l~~~~~~~~~~---~~~~~~~~-~~~~~i~~l~ 553 (945)
+++|+|++. .|+||.+.+.+ ++.+.||++||++++++++|++++++..+ +|....++ +|++++.+|.
T Consensus 3 ~~~l~v~~~---~~pP~~~~~~~~~~~~~~g~~~G~~~dl~~~ia~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~ 79 (263)
T 1mqi_A 3 NKTVVVTTI---LESPYVMMKKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGELV 79 (263)
T ss_dssp CCCEEEEEC---CBTTTBEECTTGGGCCGGGGEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCBCTTTCCBCHHHHHHH
T ss_pred CeEEEEEEe---cCCCcEEEecCcccccCCCceeeeHHHHHHHHHHHcCceEEEEEccccccCccCCCCCCcHHHHHHHH
Confidence 478999994 46788876642 37899999999999999999885554442 23333333 7999999999
Q ss_pred cCcccEEEecEEEecCcceeEEecccccccceEEEEEccCCCCCceeeeccCchhhHHHHHHHHHHHHhhhheeecccCC
Q 002267 554 LNKFDAAVGDITIVTNRTKLVDFTQPYMESGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNN 633 (945)
Q Consensus 554 ~g~~D~~~~~~~~t~~r~~~~dfs~p~~~~~~~~vv~~~~~~~~~~~fl~PF~~~~W~~~~~~~~~~~~~~~~l~~~~~~ 633 (945)
+|++|++++++++|++|.+.++||.||+..+.++++++..
T Consensus 80 ~g~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~---------------------------------------- 119 (263)
T 1mqi_A 80 YGKADIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGT---------------------------------------- 119 (263)
T ss_dssp TTSCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEETTC----------------------------------------
T ss_pred cCCcCEEEEeeEecHHHHhhcccccceecccEEEEEcCcc----------------------------------------
Confidence 9999999988999999999999999999999999998764
Q ss_pred CCCCCCccchhhHHHHHHHHhhccccCcccccchhhHHHHHHHHHHhhhhhhhhhhheeeeeccccCCCCChHHhhcCCC
Q 002267 634 EFRGPPSQQLVTIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISSTE 713 (945)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~~~~dL~~~~~ 713 (945)
++++++||. |+
T Consensus 120 -------------------------------------------------------------------~i~~~~dL~--g~ 130 (263)
T 1mqi_A 120 -------------------------------------------------------------------PIESAEDLS--KQ 130 (263)
T ss_dssp -------------------------------------------------------------------SCCSHHHHH--TC
T ss_pred -------------------------------------------------------------------ccCCHHHHh--cc
Confidence 578999998 66
Q ss_pred C---eEEe-eCchHHHHHHHhhcc-----------ccccceecCCHHHHHHHH--hcCCCCCceeEEecchhhHHHHhcc
Q 002267 714 P---IGVQ-DGSFAWNYLVDELKI-----------AESRLVKLKNMEEYSIAL--ARGPKGGGVAAIVDELPYIELFMSK 776 (945)
Q Consensus 714 ~---v~~~-~~s~~~~~l~~~~~~-----------~~~~~~~~~~~~~~~~~l--~~~~~~g~~~a~~~~~~~~~~~~~~ 776 (945)
+ +|.. .|+.. .++.+. ++ ....++.+.+.++++++| .+ |+ ++++.+...+.+++++
T Consensus 131 ~~~~ig~v~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----g~-da~~~~~~~~~~~~~~ 203 (263)
T 1mqi_A 131 TEIAYGTLDSGSTK-EFFRRS-KIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSK----GK-YAYLLESTMNEYIEQR 203 (263)
T ss_dssp SSSEEECBSSSHHH-HHHHHC-CSHHHHHHHHHHHHCSSCCCBSSHHHHHHHHHHTT----TS-EEEEEEHHHHHHHTTS
T ss_pred cCeeEEEEeccHHH-HHHHhc-cchhHHHHHHHHhhCCCceecCCHHHHHHHHhhcC----Cc-EEEEechHHHHHHHhc
Confidence 5 5644 55544 444321 11 112467788999999999 77 77 8999999999988887
Q ss_pred CCccEEEeCccccccceEEEecCCCcchHHHHHHHHhccccccHHHHHHHhcC-CCCCC
Q 002267 777 TNCEFRTVGQEFTKSGWGFAFQRDSPLAIDLSTAILQLSENGDLQKIHNKWLT-YNECS 834 (945)
Q Consensus 777 ~~~~~~~~~~~~~~~~~~~~~~k~spl~~~i~~~i~~l~e~G~~~~i~~~w~~-~~~c~ 834 (945)
..|++.+++..+...+++++++|+++|.+.||++|.+|.++|.+++|.+||+. ...|+
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~in~~l~~l~~~g~~~~i~~k~~~~~~~C~ 262 (263)
T 1mqi_A 204 KPCDTMKVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDKGECG 262 (263)
T ss_dssp TTCCEEEESCCSCCEEECCEEETTCTTHHHHHHHHHHHHHTTHHHHHHHHHHTTTCSCC
T ss_pred CCCceEEcCCcccccceEEEEeCCCccHHHHHHHHHHHHhcccHHHHHHHHcCCCCCCC
Confidence 45688888877878889999999999999999999999999999999999998 67786
No 46
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A
Probab=99.88 E-value=3.7e-22 Score=211.59 Aligned_cols=236 Identities=24% Similarity=0.428 Sum_probs=181.6
Q ss_pred CCCceEEEecCccccccceeccCC----CCceeeeeHHHHHHHHHhCCCCccEEEEE---cCCCCCCCCHHHHHHHHHcC
Q 002267 483 NGMPLRIAVPNRVSYNEFVAKDKS----PPGVKGYCIDVFEAAVNLLPYPVPHNYIM---YGNGKRNPIYNDIVQQVALN 555 (945)
Q Consensus 483 ~g~~l~v~~~~~~~~~~~~~~~~~----~~~~~G~~~dll~~l~~~l~~~~~~~~~~---~~~~~~~~~~~~~i~~l~~g 555 (945)
+|++|||++... +||.+.+.+ .+.+.|+++||++++++++|++++++..+ +|....+.+|++++.+|.+|
T Consensus 1 ~~~~l~v~~~~~---pP~~~~~~~~~g~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~g 77 (265)
T 2v3u_A 1 GGVVLRVVTVLE---EPFVMVSENVLGKPKKYQGFSIDVLDALSNYLGFNYEIYVAPDHKYGSPQEDGTWNGLVGELVFK 77 (265)
T ss_dssp CCCEEEEEECCB---TTTBEEECCSTTCCCEEESHHHHHHHHHHHHHTCEEEEEECTTCCCCCBCTTSCBCHHHHHHHTT
T ss_pred CCeEEEEEEecc---CCeEEEecCCCCCcceEeEEEHHHHHHHHHHcCCcEEEEEccCCcccccCCCCCcchHHHHHHcC
Confidence 478999999544 677766531 17899999999999999999884444332 22222357899999999999
Q ss_pred cccEEEecEEEecCcceeEEecccccccceEEEEEccCCCCCceeeeccCchhhHHHHHHHHHHHHhhhheeecccCCCC
Q 002267 556 KFDAAVGDITIVTNRTKLVDFTQPYMESGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEF 635 (945)
Q Consensus 556 ~~D~~~~~~~~t~~r~~~~dfs~p~~~~~~~~vv~~~~~~~~~~~fl~PF~~~~W~~~~~~~~~~~~~~~~l~~~~~~~~ 635 (945)
++|++++++++|++|.+.++||.||+..+.++++++..
T Consensus 78 ~~D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~------------------------------------------ 115 (265)
T 2v3u_A 78 RADIGISALTITPDRENVVDFTTRYMDYSVGVLLRRGT------------------------------------------ 115 (265)
T ss_dssp SCSEECSSCBCCHHHHTTEEECSCSEEECEEEEEETTC------------------------------------------
T ss_pred CcCeEEeeeEeehhhhccccccceeeeccEEEEEECCC------------------------------------------
Confidence 99999988999999999999999999999999998754
Q ss_pred CCCCccchhhHHHHHHHHhhccccCcccccchhhHHHHHHHHHHhhhhhhhhhhheeeeeccccCCCCChHHhhcC-CCC
Q 002267 636 RGPPSQQLVTIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISS-TEP 714 (945)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~~~~dL~~~-~~~ 714 (945)
+|++++||.+. +..
T Consensus 116 -----------------------------------------------------------------~i~~~~dL~~~v~v~ 130 (265)
T 2v3u_A 116 -----------------------------------------------------------------SIQSLQDLSKQTDIP 130 (265)
T ss_dssp -----------------------------------------------------------------CCCSHHHHHTCSSSC
T ss_pred -----------------------------------------------------------------CccchhhhhhhhcEE
Confidence 57889999721 123
Q ss_pred eEEeeCchHHHHHHHhhcccc------------------ccceecCCHHHHHHHHhcCCCCCceeEEecchhhHHHHhcc
Q 002267 715 IGVQDGSFAWNYLVDELKIAE------------------SRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSK 776 (945)
Q Consensus 715 v~~~~~s~~~~~l~~~~~~~~------------------~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~ 776 (945)
.|...++....++.+. +... .+++.+.+.++++++|.+ |++ +++.+...+.+++.+
T Consensus 131 ~g~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~----G~~-a~~~~~~~~~~~~~~ 204 (265)
T 2v3u_A 131 YGTVLDSAVYQHVRMK-GLNPFERDSMYSQMWRMINRSNGSENNVLESQAGIQKVKY----GNY-AFVWDAAVLEYVAIN 204 (265)
T ss_dssp EECBTTSHHHHHHHHH-HTCTTCSCTHHHHHHHHHCC-----CCBSSHHHHHHHHHH----SSC-EEEEEHHHHHHHHHH
T ss_pred EEEeccHHHHHHHHhc-CCCcccccHHHHHHHHHHHhhcCcccccCCHHHHHHHHHc----CCE-EEEEcchHHHHHHhc
Confidence 3444455555666432 1111 123567899999999999 888 888888888887765
Q ss_pred -CCccEEEeCccccccceEEEecCCCcchHHHHHHHHhccccccHHHHHHHhcC-CCCCC
Q 002267 777 -TNCEFRTVGQEFTKSGWGFAFQRDSPLAIDLSTAILQLSENGDLQKIHNKWLT-YNECS 834 (945)
Q Consensus 777 -~~~~~~~~~~~~~~~~~~~~~~k~spl~~~i~~~i~~l~e~G~~~~i~~~w~~-~~~c~ 834 (945)
..|++.+++..+...+++++++|++||.+.||++|.+|.++|.+++|.+||+. ...|.
T Consensus 205 ~~~~~l~~~~~~~~~~~~~~~~~k~~~l~~~in~~l~~l~~~g~~~~i~~kw~~~~~~c~ 264 (265)
T 2v3u_A 205 DPDCSFYTVGNTVADRGYGIALQHGSPYRDVFSQRILELQQSGDMDILKHKWWPKNGQCD 264 (265)
T ss_dssp CTTCCEEEEC---CCEEECCEEETTCTTHHHHHHHHHHHHHHTHHHHHHHHHCCCCCC--
T ss_pred CCCccEEEeccccCCcceEEEEeCCCccHHHHHHHHHHHhhCChHHHHHhhcCCCcCcCC
Confidence 24689999888888889999999999999999999999999999999999998 56674
No 47
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=99.88 E-value=4.1e-22 Score=207.36 Aligned_cols=220 Identities=17% Similarity=0.321 Sum_probs=191.1
Q ss_pred CceEEEecCccccccceec-cCCCCceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHHHHHHHHHcCcccEEEec
Q 002267 485 MPLRIAVPNRVSYNEFVAK-DKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGD 563 (945)
Q Consensus 485 ~~l~v~~~~~~~~~~~~~~-~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~ 563 (945)
++|+||+. +.|+||.+. +. ++.+.|+++|+++++++++|++++++.. +|.+++.++.+|++|+++++
T Consensus 3 ~~l~v~~~--~~~~P~~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~~~ 70 (237)
T 3kzg_A 3 LNLTIGTS--KFNPPFEVWSGN-NSSLYGFDIDLMQEICRRLHATCTFEAY---------IFDDLFPALKNREVDLVIAS 70 (237)
T ss_dssp CEEEEEEE--SEETTTEECCCT-TSCCBSHHHHHHHHHHHHTTCEEEEEEE---------CGGGHHHHHHTTSSSEECSS
T ss_pred ceEEEEEC--CCCCCeEEEeCC-CCCEeeehHHHHHHHHHHhCCceEEEEc---------CHHHHHHHHhCCCCCEEEEc
Confidence 57999994 458999988 53 7889999999999999999988555544 49999999999999999999
Q ss_pred EEEecCcceeEEecccccccceEEEEEccCCCCCceeeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCCccch
Q 002267 564 ITIVTNRTKLVDFTQPYMESGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEFRGPPSQQL 643 (945)
Q Consensus 564 ~~~t~~r~~~~dfs~p~~~~~~~~vv~~~~~~~~~~~fl~PF~~~~W~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 643 (945)
++.+.+|.+.++||.||+....++++++..
T Consensus 71 ~~~~~~r~~~~~fs~p~~~~~~~~~~~~~~-------------------------------------------------- 100 (237)
T 3kzg_A 71 MIITDERKKHFIFSLPYMESNSQYITTVDS-------------------------------------------------- 100 (237)
T ss_dssp CBCCTTGGGTCEECCCSBCCEEEEEEETTC--------------------------------------------------
T ss_pred cccChhHhccceeeeeeeecceEEEEECCC--------------------------------------------------
Confidence 999999999999999999999999998766
Q ss_pred hhHHHHHHHHhhccccCcccccchhhHHHHHHHHHHhhhhhhhhhhheeeeeccccCCCCChHHhhcCCCCeEEeeCchH
Q 002267 644 VTIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISSTEPIGVQDGSFA 723 (945)
Q Consensus 644 ~~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~~~~dL~~~~~~v~~~~~s~~ 723 (945)
++++++||. |++||+..|+..
T Consensus 101 ---------------------------------------------------------~~~~~~dL~--g~~i~~~~g~~~ 121 (237)
T 3kzg_A 101 ---------------------------------------------------------KISTFDDLH--GKKIGVRKGTPY 121 (237)
T ss_dssp ---------------------------------------------------------SCCSGGGGT--TCEEEEETTSTH
T ss_pred ---------------------------------------------------------CCCCHHHhC--CCEEEEecCCHH
Confidence 488999997 899999999987
Q ss_pred HHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceeEEecchhhHHHHhccCC------c-cEEEeCccc-cccceEE
Q 002267 724 WNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTN------C-EFRTVGQEF-TKSGWGF 795 (945)
Q Consensus 724 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~------~-~~~~~~~~~-~~~~~~~ 795 (945)
..++.+.. +..+++.+.+.++++++|.+ |++|+++.+...+.+++++.. . ++.+++..+ ...++++
T Consensus 122 ~~~~~~~~--~~~~~~~~~~~~~~~~~l~~----G~vDa~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 195 (237)
T 3kzg_A 122 ARQVLSEN--RNNQVIFYELIQDMLLGLSN----NQVDASLMDYEAAKYWMASEPYAYKLIGKKYKLIGKKISIGEGYSI 195 (237)
T ss_dssp HHHHHHTC--SSCEEEEESSHHHHHHHHHT----TSSSEEEEEHHHHHHHHTTSSTTHHHHCCSEEEEEEEEECTTCBCC
T ss_pred HHHHHHhC--CCCcEEEeCCHHHHHHHHHc----CCCCEEEeCcHHHHHHHHhCCccccccCCceEEecCccccCccEEE
Confidence 77775433 34678889999999999999 999999999999999988733 2 788888777 7888999
Q ss_pred EecCCCc-chHHHHHHHHhccccccHHHHHHHhcCCC
Q 002267 796 AFQRDSP-LAIDLSTAILQLSENGDLQKIHNKWLTYN 831 (945)
Q Consensus 796 ~~~k~sp-l~~~i~~~i~~l~e~G~~~~i~~~w~~~~ 831 (945)
+++|+++ +.+.||++|.++.++|.+++|.+||+...
T Consensus 196 ~~~k~~~~l~~~l~~~l~~l~~~G~~~~i~~k~~~~~ 232 (237)
T 3kzg_A 196 MANPDQFVLIKKINKILLEMEADGTYLRLYSEYFEGH 232 (237)
T ss_dssp EECGGGHHHHHHHHHHHHHHHHSSHHHHHHHHHC---
T ss_pred EEcCCCHHHHHHHHHHHHHHHHCCcHHHHHHHHhCcc
Confidence 9999977 99999999999999999999999999843
No 48
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=99.87 E-value=1.1e-21 Score=205.90 Aligned_cols=223 Identities=20% Similarity=0.419 Sum_probs=194.2
Q ss_pred CCCCceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHHHHHHHHHcCcccEEE
Q 002267 482 NNGMPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAV 561 (945)
Q Consensus 482 ~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~ 561 (945)
...++|+|++. +.|+||.+.+ ++.+.|+++||++.+++++|++++++.. .|.+++.++.+|++|+++
T Consensus 21 ~~~~~l~v~~~--~~~~P~~~~~--~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~ 87 (249)
T 4f3p_A 21 SMAKELVVGTD--TSFMPFEFKQ--GDKYVGFDLDLWAEIAKGAGWTYKIQPM---------DFAGLIPALQTQNIDVAL 87 (249)
T ss_dssp ---CCEEEEEE--SCBTTTBEEE--TTEEESHHHHHHHHHHHHHTCCEEEEEE---------CGGGHHHHHHTTSCSEEE
T ss_pred ccCceEEEEeC--CCCCCeEEec--CCeEEEEhHHHHHHHHHHcCCceEEEec---------CHHHHHHHHHCCCCCEEE
Confidence 35678999994 5688888773 6889999999999999999988555554 489999999999999999
Q ss_pred ecEEEecCcceeEEecccccccceEEEEEccCCCCCceeeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCCcc
Q 002267 562 GDITIVTNRTKLVDFTQPYMESGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEFRGPPSQ 641 (945)
Q Consensus 562 ~~~~~t~~r~~~~dfs~p~~~~~~~~vv~~~~~~~~~~~fl~PF~~~~W~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 641 (945)
+++..+.+|.+.++||.||.....++++++..
T Consensus 88 ~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~------------------------------------------------ 119 (249)
T 4f3p_A 88 SGMTIKEERRKAIDFSDPYYDSGLAAMVQANN------------------------------------------------ 119 (249)
T ss_dssp EEEECCHHHHTTEEECSCCEEEEEEEEEETTC------------------------------------------------
T ss_pred eccccCHHHHcCcceecceeeccEEEEEECCC------------------------------------------------
Confidence 88999999999999999999999999998765
Q ss_pred chhhHHHHHHHHhhccccCcccccchhhHHHHHHHHHHhhhhhhhhhhheeeeeccccCCCCChHHhhcCCCCeEEeeCc
Q 002267 642 QLVTIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISSTEPIGVQDGS 721 (945)
Q Consensus 642 ~~~~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~~~~dL~~~~~~v~~~~~s 721 (945)
+.+++++||. |++||+..|+
T Consensus 120 ----------------------------------------------------------~~i~~~~dL~--g~~i~v~~g~ 139 (249)
T 4f3p_A 120 ----------------------------------------------------------TTIKSIDDLN--GKVIAAKTGT 139 (249)
T ss_dssp ----------------------------------------------------------CSCCSSGGGT--TSEEEEETTS
T ss_pred ----------------------------------------------------------CCcCChHHhC--CCEEEEeCCC
Confidence 4688999996 8899999999
Q ss_pred hHHHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceeEEecchhhHHHHhccCC-ccEEEeCccccccceEEEecCC
Q 002267 722 FAWNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTN-CEFRTVGQEFTKSGWGFAFQRD 800 (945)
Q Consensus 722 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~k~ 800 (945)
....++.+.. +..+++.+++.++++++|.+ |++|+++.+...+.+++++.. .++.++...+...+++++++|+
T Consensus 140 ~~~~~l~~~~--~~~~~~~~~~~~~~~~~L~~----GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~ 213 (249)
T 4f3p_A 140 ATIDWIKAHL--KPKEIRQFPNIDQAYLALEA----GRVDAAMHDTPNVLFFVNNEGKGRVKVAGAPVSGDKYGIGFPKG 213 (249)
T ss_dssp HHHHHHHHHC--CCSEEEEESSHHHHHHHHHT----TSSSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEEEEEEETT
T ss_pred hHHHHHHhcC--CCceEEEcCCHHHHHHHHHc----CCeeEEEeCcHHHHHHHHhCCCCceEEecCCCCCccEEEEEcCC
Confidence 9888886543 44678889999999999999 999999999999999888733 2588888888888999999999
Q ss_pred CcchHHHHHHHHhccccccHHHHHHHhcCCC
Q 002267 801 SPLAIDLSTAILQLSENGDLQKIHNKWLTYN 831 (945)
Q Consensus 801 spl~~~i~~~i~~l~e~G~~~~i~~~w~~~~ 831 (945)
+|+.+.||++|.++.++|.+++|.+||+...
T Consensus 214 ~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~~ 244 (249)
T 4f3p_A 214 SPLVAKVNAELARMKADGRYAKIYKKWFGSE 244 (249)
T ss_dssp CTHHHHHHHHHHHHHHHTHHHHHHHHHHSSC
T ss_pred chHHHHHHHHHHHHHhCCcHHHHHHHHcCCC
Confidence 9999999999999999999999999999844
No 49
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=99.87 E-value=1e-21 Score=203.65 Aligned_cols=220 Identities=17% Similarity=0.314 Sum_probs=187.5
Q ss_pred CCceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHHHHHHHHHcCcccEEEec
Q 002267 484 GMPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGD 563 (945)
Q Consensus 484 g~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~ 563 (945)
.++|||++ .+.|+||.+.+. ++.+.|+++||++++++++|++ ++++. .+|.+++.++.+|++|+++++
T Consensus 4 a~~l~v~~--~~~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~--~~~~~-------~~~~~~~~~l~~g~~D~~~~~ 71 (232)
T 3i6v_A 4 ADTVRMGT--EGAYPPYNFIND-AGEVDGFERELGDELCKRAGLT--CEWVK-------NDWDSIIPNLVSGNYDTIIAG 71 (232)
T ss_dssp --CEEEEE--CSEETTTEEECT-TSCEESHHHHHHHHHHHHHTCC--EEEEE-------CCGGGHHHHHHTTSCSEECSS
T ss_pred CCEEEEEE--CCCCCCeeEECC-CCCEeeehHHHHHHHHHHcCCc--eEEEE-------CCHHHHHHHHHCCCCCEEEeC
Confidence 46899999 456899998764 6889999999999999999988 55554 459999999999999999999
Q ss_pred EEEecCcceeEEecccccccceEEEEEccCCCCCceeeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCCccch
Q 002267 564 ITIVTNRTKLVDFTQPYMESGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEFRGPPSQQL 643 (945)
Q Consensus 564 ~~~t~~r~~~~dfs~p~~~~~~~~vv~~~~~~~~~~~fl~PF~~~~W~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 643 (945)
++.|++|.+.++||.||+..+.++++++..
T Consensus 72 ~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~-------------------------------------------------- 101 (232)
T 3i6v_A 72 MSITDERDEVIDFTQNYIPPTASSYVATSD-------------------------------------------------- 101 (232)
T ss_dssp CBCCHHHHTTSEEEEEEECCCEEEEEESST--------------------------------------------------
T ss_pred CcCCHHHHhhcCcccccccCCeEEEEECCC--------------------------------------------------
Confidence 999999999999999999999999987643
Q ss_pred hhHHHHHHHHhhccccCcccccchhhHHHHHHHHHHhhhhhhhhhhheeeeeccccCCCCChHHhhcCCCCeEEeeCchH
Q 002267 644 VTIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISSTEPIGVQDGSFA 723 (945)
Q Consensus 644 ~~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~~~~dL~~~~~~v~~~~~s~~ 723 (945)
++||. | +||+..|+..
T Consensus 102 -------------------------------------------------------------~~dL~--g-~igv~~g~~~ 117 (232)
T 3i6v_A 102 -------------------------------------------------------------GADLS--G-IVAAQTATIQ 117 (232)
T ss_dssp -------------------------------------------------------------TCCTT--S-EEEEETTSHH
T ss_pred -------------------------------------------------------------hHHhC--C-CEEEecCchH
Confidence 34564 7 9999999999
Q ss_pred HHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceeEEecchhhHHHHhccCCccEEEeCc-cccccceEEEecCCCc
Q 002267 724 WNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVGQ-EFTKSGWGFAFQRDSP 802 (945)
Q Consensus 724 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~k~sp 802 (945)
..++.+. ..+++.+.+.++++++|.+ |++|+++.+...+.+++++...++.++.. .+...+++++++|++|
T Consensus 118 ~~~l~~~----~~~~~~~~~~~~~~~~L~~----GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 189 (232)
T 3i6v_A 118 AGYIAES----GATLVEFATPEETIAAVRN----GEADAVFADRDYLVPIVAESGGELMFVGDDVPLGGGVGMGLRESDG 189 (232)
T ss_dssp HHHHHHS----SSEEEEESSHHHHHHHHHT----TSSSEEEEEHHHHHHHHHHTTTSSEEEEEEEECSSCEEEEECTTCH
T ss_pred HHHHHhc----CCeEEEeCCHHHHHHHHHc----CCcCEEEEChHHHHHHHHhCCCCeEEecCCCCCCCcEEEEEeCCCH
Confidence 8888754 4678889999999999999 99999999999999998873367777765 4566789999999988
Q ss_pred -chHHHHHHHHhccccccHHHHHHHhcCCCCCCCCC
Q 002267 803 -LAIDLSTAILQLSENGDLQKIHNKWLTYNECSMDL 837 (945)
Q Consensus 803 -l~~~i~~~i~~l~e~G~~~~i~~~w~~~~~c~~~~ 837 (945)
+.+.||++|.++.++|.+++|.+||+....|....
T Consensus 190 ~l~~~ln~~l~~l~~~G~~~~i~~k~~~~~~~~~~~ 225 (232)
T 3i6v_A 190 ELRGKFDAAITSMKEDGTLNTMIKKWFGEDAAVYEE 225 (232)
T ss_dssp HHHHHHHHHHHHHHHTSHHHHHHHHHHCTTSCCC--
T ss_pred HHHHHHHHHHHHHHHCChHHHHHHHHcCCCCCcccc
Confidence 99999999999999999999999999966555443
No 50
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=99.87 E-value=1.5e-21 Score=207.28 Aligned_cols=227 Identities=18% Similarity=0.329 Sum_probs=196.1
Q ss_pred CCceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHHHHHHHHHcCcccEEEec
Q 002267 484 GMPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGD 563 (945)
Q Consensus 484 g~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~ 563 (945)
.++||||+. +.|+||.+.+. ++.+.|+++|+++.+++++|++ +++++ ..|.+++.++.+|++|+++++
T Consensus 20 ~~~l~v~~~--~~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~--~~~~~-------~~~~~~~~~l~~g~~D~~~~~ 87 (268)
T 3hv1_A 20 EKKIKIGFD--ATFVPMGYEEK-DGSYIGFDIDLANAVFKLYGID--VEWQA-------IDWDMKETELKNGTIDLIWNG 87 (268)
T ss_dssp HTEEEEEEC--TEETTTEEECT-TSCEECHHHHHHHHHHHTTTCE--EEEEE-------CCGGGHHHHHHHTSCSEECSS
T ss_pred CCcEEEEEC--CCCCCceEECC-CCCEEEehHHHHHHHHHHhCCc--EEEEE-------CCHHHHHHHHHCCCCCEEEec
Confidence 468999994 56889998764 7889999999999999999977 55554 349999999999999999988
Q ss_pred EEEecCcceeEEecccccccceEEEEEccCCCCCceeeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCCccch
Q 002267 564 ITIVTNRTKLVDFTQPYMESGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEFRGPPSQQL 643 (945)
Q Consensus 564 ~~~t~~r~~~~dfs~p~~~~~~~~vv~~~~~~~~~~~fl~PF~~~~W~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 643 (945)
+..+.+|.+.++||.||+....++++++..
T Consensus 88 ~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~-------------------------------------------------- 117 (268)
T 3hv1_A 88 YSVTDERKQSADFTEPYMVNEQVLVTKKSS-------------------------------------------------- 117 (268)
T ss_dssp CBCCHHHHTTCEECCCCEEECEEEEEEGGG--------------------------------------------------
T ss_pred CccCHHHHhcCcCcHHHeeCceEEEEECCC--------------------------------------------------
Confidence 999999999999999999999999998764
Q ss_pred hhHHHHHHHHhhccccCcccccchhhHHHHHHHHHHhhhhhhhhhhheeeeeccccCCCCChHHhhcCCCCeEEeeCchH
Q 002267 644 VTIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISSTEPIGVQDGSFA 723 (945)
Q Consensus 644 ~~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~~~~dL~~~~~~v~~~~~s~~ 723 (945)
.|++++||. |++||+..|+..
T Consensus 118 ---------------------------------------------------------~i~~~~dL~--g~~i~v~~g~~~ 138 (268)
T 3hv1_A 118 ---------------------------------------------------------GIDSVAGMA--GKTLGAQAGSSG 138 (268)
T ss_dssp ---------------------------------------------------------CCCSSGGGT--TCCEEEETTCHH
T ss_pred ---------------------------------------------------------CCCCHHHhC--CCEEEEEeCCch
Confidence 678899996 899999999998
Q ss_pred HHHHHHhhc-----cccccceecCCHHHHHHHHhcCCCCCceeEEecchhhHHHHhccCC--ccEEEeCccccccceEEE
Q 002267 724 WNYLVDELK-----IAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTN--CEFRTVGQEFTKSGWGFA 796 (945)
Q Consensus 724 ~~~l~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 796 (945)
..++..... .+..+++.+.+.++++++|.+ |++|+++.+...+.+++++.. +++.++...+...+++++
T Consensus 139 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~----GrvDa~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 214 (268)
T 3hv1_A 139 YDAFNASPKILKDVVANQKVVQYSTFTQALIDLNS----GRIDGLLIDRVYANYYLEKSGVLDQYNVMPAGYEGESFAVG 214 (268)
T ss_dssp HHHHHHCTTTTTTTSGGGCEEEESSHHHHHHHHHH----TSCSEEEEEHHHHHHHHHHTTCGGGEEEEECSSCCEEECCE
T ss_pred HHHHHHhhHHHhhhcccceEEEeCCHHHHHHHHHc----CCCCEEEeCHHHHHHHHHhCCCCCceEECCCCCCCCcEEEE
Confidence 888764321 233577888999999999999 999999999999999887743 568888877888889999
Q ss_pred ecCCCc-chHHHHHHHHhccccccHHHHHHHhcCCCCCCC
Q 002267 797 FQRDSP-LAIDLSTAILQLSENGDLQKIHNKWLTYNECSM 835 (945)
Q Consensus 797 ~~k~sp-l~~~i~~~i~~l~e~G~~~~i~~~w~~~~~c~~ 835 (945)
++|+++ +.+.||++|.++.++|.+++|.+||+....++.
T Consensus 215 ~~k~~~~l~~~ln~~l~~l~~~g~~~~i~~k~~~~~~~~~ 254 (268)
T 3hv1_A 215 ARKVDKTLIKKINQGFETLYKNGEFQKISNKWFGEDVATD 254 (268)
T ss_dssp ECTTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHSSCCCCT
T ss_pred EcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHhcCCCCCCC
Confidence 999998 999999999999999999999999999544443
No 51
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=99.86 E-value=1.4e-21 Score=204.55 Aligned_cols=225 Identities=17% Similarity=0.286 Sum_probs=196.6
Q ss_pred CCceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHHHHHHHHHcCcccEEEec
Q 002267 484 GMPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGD 563 (945)
Q Consensus 484 g~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~ 563 (945)
.++||||+. +.|+||.+.+. ++.+.|+++|+++++++++|++ +++++ .+|.+++.++.+|++|+++++
T Consensus 4 ~~~l~v~~~--~~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~--~~~~~-------~~~~~~~~~l~~g~~D~~~~~ 71 (245)
T 3k4u_A 4 RGELRVGLE--PGYLPFEMKDK-KGNVIGFDVDLAREMAKAMGVK--LKLVP-------TSWDGLIPGLVTEKFDIIISG 71 (245)
T ss_dssp CSEEEEEEC--TTSTTTCEEET-TTEEESHHHHHHHHHHHHHTCE--EEEEE-------CCGGGHHHHHHTTSCSEECSS
T ss_pred CCeEEEEEC--CCcCCeeEECC-CCCCccchHHHHHHHHHHhCCe--EEEEE-------ccHHHHHHHHhCCCcCEEEec
Confidence 468999994 57889988764 7889999999999999999977 55554 359999999999999999888
Q ss_pred EEEecCcceeEEecccccccceEEEEEccCCCCCceeeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCCccch
Q 002267 564 ITIVTNRTKLVDFTQPYMESGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEFRGPPSQQL 643 (945)
Q Consensus 564 ~~~t~~r~~~~dfs~p~~~~~~~~vv~~~~~~~~~~~fl~PF~~~~W~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 643 (945)
+..+.+|.+.+.||.||+....++++++...
T Consensus 72 ~~~t~~r~~~~~~s~p~~~~~~~~~~~~~~~------------------------------------------------- 102 (245)
T 3k4u_A 72 MTISQERNLRVNFVEPYIVVGQSLLVKKGLE------------------------------------------------- 102 (245)
T ss_dssp CBCCHHHHTTSEECSCSEEECEEEEEETTTT-------------------------------------------------
T ss_pred CcCCHHHHhhcCcchhhheeceEEEEECCcc-------------------------------------------------
Confidence 9999999999999999999999999987741
Q ss_pred hhHHHHHHHHhhccccCcccccchhhHHHHHHHHHHhhhhhhhhhhheeeeeccccCCCCChHHhhcCCCCeEEeeCchH
Q 002267 644 VTIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISSTEPIGVQDGSFA 723 (945)
Q Consensus 644 ~~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~~~~dL~~~~~~v~~~~~s~~ 723 (945)
..+++++||.+.|++||+..|+..
T Consensus 103 --------------------------------------------------------~~i~~~~dL~~~g~~i~v~~g~~~ 126 (245)
T 3k4u_A 103 --------------------------------------------------------KGVKSYKDLDKPELTLVTKFGVSA 126 (245)
T ss_dssp --------------------------------------------------------TTCCSGGGGCCSSCEEEEETTSHH
T ss_pred --------------------------------------------------------cccCCHHHhccCCcEEEEeCCcHH
Confidence 368899999877889999999999
Q ss_pred HHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceeEEecchhhHHHHhccCC-ccEEEeCccccccceEEEecCCCc
Q 002267 724 WNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTN-CEFRTVGQEFTKSGWGFAFQRDSP 802 (945)
Q Consensus 724 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~k~sp 802 (945)
..++.+.. +..+++.+++.++++++|.+ |++|+++.+...+.+++.+.. ..+..+...+...+++++++|++|
T Consensus 127 ~~~l~~~~--~~~~~~~~~~~~~~~~~L~~----GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 200 (245)
T 3k4u_A 127 EYAAKRLF--KNAKLKTYDTEAEAVQEVLN----GKADMFIFDLPFNVAFMAQKGQGYLVHLDTSLTYEPLGWAIKKGDP 200 (245)
T ss_dssp HHHHHHHC--SSSEEEEESSHHHHHHHHHS----SSSEEEEEEHHHHHHHHHHTTTTTEEEECCCCSCEEECCEECTTCH
T ss_pred HHHHHhhC--CcCCEEEeCCHHHHHHHHHc----CCCcEEEEcHHHHHHHHhcCCccceeecCCCcccccEEEEEcCCCH
Confidence 88886533 44678889999999999999 999999999999988877633 368888888888899999999999
Q ss_pred -chHHHHHHHHhccccccHHHHHHHhcCCC
Q 002267 803 -LAIDLSTAILQLSENGDLQKIHNKWLTYN 831 (945)
Q Consensus 803 -l~~~i~~~i~~l~e~G~~~~i~~~w~~~~ 831 (945)
+.+.||++|.++.++|.+++|.+||+...
T Consensus 201 ~l~~~ln~~l~~l~~~g~~~~i~~k~~~~~ 230 (245)
T 3k4u_A 201 DFLNWLNHFLAQIKHDGSYDELYERWFVDT 230 (245)
T ss_dssp HHHHHHHHHHHHHHHHSHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHhcCcc
Confidence 99999999999999999999999999843
No 52
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=99.86 E-value=3.5e-21 Score=200.98 Aligned_cols=223 Identities=19% Similarity=0.291 Sum_probs=194.2
Q ss_pred CCCceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHHHHHHHHHcCcccEEEe
Q 002267 483 NGMPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVG 562 (945)
Q Consensus 483 ~g~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~ 562 (945)
..++|+||+ .+.|+||.+.+. ++.+.|+++|+++++++++|++ +++++ .+|.+++.+|.+|++|++++
T Consensus 9 ~~~~l~v~~--~~~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~--~~~~~-------~~~~~~~~~l~~g~~D~~~~ 76 (242)
T 3del_B 9 NSEKFIVGT--NATYPPFEFVDK-RGEVVGFDIDLAREISNKLGKT--LDVRE-------FSFDALILNLKQHRIDAVIT 76 (242)
T ss_dssp --CEEEEEE--CSCBTTTBEECT-TSCEESHHHHHHHHHHHHHTCE--EEEEE-------CCGGGHHHHHHTTSSSEECS
T ss_pred cCCcEEEEe--CCCCCCeeEECC-CCCEEEeeHHHHHHHHHHcCCc--eEEEE-------cCHHHHHHHHhCCCcCEEEe
Confidence 346899999 556889988765 7899999999999999999977 55554 35999999999999999998
Q ss_pred cEEEecCcceeEEeccccc--ccceEEEEEccCCCCCceeeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCCc
Q 002267 563 DITIVTNRTKLVDFTQPYM--ESGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEFRGPPS 640 (945)
Q Consensus 563 ~~~~t~~r~~~~dfs~p~~--~~~~~~vv~~~~~~~~~~~fl~PF~~~~W~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 640 (945)
++..+.+|.+.++| .||+ ..+.++++++..
T Consensus 77 ~~~~~~~r~~~~~~-~p~~~~~~~~~~~~~~~~----------------------------------------------- 108 (242)
T 3del_B 77 GMSITPSRLKEILM-IPYYGEEIKHLVLVFKGE----------------------------------------------- 108 (242)
T ss_dssp SBBCCHHHHTTEEE-EEEEEEEESEEEEEEESC-----------------------------------------------
T ss_pred cCcCCHHHHhcccc-eeeeecCCceEEEEeCCC-----------------------------------------------
Confidence 89999999999999 9999 888999988763
Q ss_pred cchhhHHHHHHHHhhccccCcccccchhhHHHHHHHHHHhhhhhhhhhhheeeeeccccCCCCChHHhhcCCCCeEEeeC
Q 002267 641 QQLVTIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISSTEPIGVQDG 720 (945)
Q Consensus 641 ~~~~~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~~~~dL~~~~~~v~~~~~ 720 (945)
.+++++||. |++||+..|
T Consensus 109 ------------------------------------------------------------~i~~~~dL~--g~~i~v~~g 126 (242)
T 3del_B 109 ------------------------------------------------------------NKHPLPLTQ--YRSVAVQTG 126 (242)
T ss_dssp ------------------------------------------------------------CSCCCCGGG--SSCEEEETT
T ss_pred ------------------------------------------------------------CCCCHHHhC--CCEEEEEcC
Confidence 678889997 889999999
Q ss_pred chHHHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceeEEecchhhHHHHhccCCccEEEeCccccccc----eEEE
Q 002267 721 SFAWNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVGQEFTKSG----WGFA 796 (945)
Q Consensus 721 s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 796 (945)
+....++.. .+..+++.+.+.++++++|.+ |++|+++.+...+.+++++ +..+.++...+...+ ++++
T Consensus 127 ~~~~~~l~~---~~~~~~~~~~~~~~~~~~L~~----g~vDa~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 198 (242)
T 3del_B 127 TYQEAYLQS---LSEVHIRSFDSTLEVLMEVMH----GKSPVAVLEPSIAQVVLKD-FPALSTATIDLPEDQWVLGYGIG 198 (242)
T ss_dssp SHHHHHHHH---STTCCEEEESSHHHHHHHHHT----TSSSEEEECHHHHHHHGGG-CTTEEEEEEECCGGGCEEEEEEE
T ss_pred cHHHHHHHh---CCCceEEEECCHHHHHHHHHc----CCCCEEEecHHHHHHHHHh-CCCeEEecCccCcccccceEEEE
Confidence 999888865 455678889999999999999 9999999999999999888 666888776666677 9999
Q ss_pred ecCCCc-chHHHHHHHHhccccccHHHHHHHhcCCCCCCC
Q 002267 797 FQRDSP-LAIDLSTAILQLSENGDLQKIHNKWLTYNECSM 835 (945)
Q Consensus 797 ~~k~sp-l~~~i~~~i~~l~e~G~~~~i~~~w~~~~~c~~ 835 (945)
++|+++ +.+.||++|.++.++|.+++|.+||+....|+.
T Consensus 199 ~~k~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~~~~~~ 238 (242)
T 3del_B 199 VASDRPALALKIEAAVQEIRKEGVLAELEQKWGLNNLEHH 238 (242)
T ss_dssp EETTCHHHHHHHHHHHHHHHHTTHHHHHHHHTTGGGCSST
T ss_pred EeCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHCCCCCccc
Confidence 999988 999999999999999999999999999655543
No 53
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=99.85 E-value=9.4e-21 Score=195.35 Aligned_cols=219 Identities=24% Similarity=0.409 Sum_probs=184.7
Q ss_pred CceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHHHHHHHHHcCcccEEEecE
Q 002267 485 MPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDI 564 (945)
Q Consensus 485 ~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~~ 564 (945)
++||||+. +.|+||.+.+. ++.+.|+++|+++++++++|++ +++++ .+|.+++.++.+|++|++++++
T Consensus 2 ~~l~v~~~--~~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~--~~~~~-------~~~~~~~~~l~~g~~D~~~~~~ 69 (227)
T 3tql_A 2 DTIKFATE--ATYPPYVYMGP-SGQVEGFGADIVKAVCKQMQAV--CTISN-------QPWDSLIPSLKLGKFDALFGGM 69 (227)
T ss_dssp CEEEEEEC--SCBTTTBEEC---CCEESHHHHHHHHHHHHTTCE--EEEEE-------CCHHHHHHHHHHTSCSEECSSC
T ss_pred ceEEEEEc--CCCCCeeEECC-CCCcccchHHHHHHHHHHhCCe--EEEEe-------CCHHHHHHHHhCCCCCEEEecC
Confidence 57999994 45889988764 6889999999999999999987 45554 4599999999999999998889
Q ss_pred EEecCcceeEEecccccccceEEEEEccCCCCCceeeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCCccchh
Q 002267 565 TIVTNRTKLVDFTQPYMESGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEFRGPPSQQLV 644 (945)
Q Consensus 565 ~~t~~r~~~~dfs~p~~~~~~~~vv~~~~~~~~~~~fl~PF~~~~W~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 644 (945)
..+.+|.+.+.||.||+....++++++..
T Consensus 70 ~~~~~r~~~~~~s~p~~~~~~~l~~~~~~--------------------------------------------------- 98 (227)
T 3tql_A 70 NITTARQKEVDFTDPYYTNSVSFIADKNT--------------------------------------------------- 98 (227)
T ss_dssp BCCTTGGGTEEECSCSBCCEEEEEEETTS---------------------------------------------------
T ss_pred cCCHhHHhheecccceeccceEEEEeCCC---------------------------------------------------
Confidence 99999999999999999999999998876
Q ss_pred hHHHHHHHHhhccccCcccccchhhHHHHHHHHHHhhhhhhhhhhheeeeeccccCCCCChHHhhcCCCCeEEeeCchHH
Q 002267 645 TIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISSTEPIGVQDGSFAW 724 (945)
Q Consensus 645 ~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~~~~dL~~~~~~v~~~~~s~~~ 724 (945)
+.+++++||. |++||+..|+...
T Consensus 99 -------------------------------------------------------~~~~~~~dL~--g~~v~~~~g~~~~ 121 (227)
T 3tql_A 99 -------------------------------------------------------PLTLSKQGLK--GKIIGVQGGTTFD 121 (227)
T ss_dssp -------------------------------------------------------CCCCSTTTTT--TCEEEEETTSHHH
T ss_pred -------------------------------------------------------CCCCCHHHhC--CCEEEEEecccHH
Confidence 2337889996 8999999999988
Q ss_pred HHHHHhhccccccceecCCHHHHHHHHhcCCCCCceeEEecchhhHHHHhccCCc-cEEEeCcccc-----ccceEEEec
Q 002267 725 NYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTNC-EFRTVGQEFT-----KSGWGFAFQ 798 (945)
Q Consensus 725 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~~~ 798 (945)
.++.+..... .+++.+.+.++++++|.+ |++|+++.+...+.+++++... ++.+++..+. ..+++++++
T Consensus 122 ~~l~~~~~~~-~~~~~~~~~~~~~~~l~~----grvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (227)
T 3tql_A 122 SYLQDSFGNS-ITIQRYPSEEDALMDLTS----GRVDAVVGDTPLIKQWLKQNGRREYVLIGKPVNDPNYFGKGVGIAVK 196 (227)
T ss_dssp HHHHHHHGGG-SEEEEESSHHHHHHHHTT----TSSSEEESCHHHHHHHHHHTTCCSEEEEEEECCCGGGCCSCBCCEEE
T ss_pred HHHHHhcccc-ceEEEcCCHHHHHHHHHc----CCcCEEEeChHHHHHHHHhCCCCCEEEecCcccCccccccceEEEEc
Confidence 8886544211 577889999999999999 9999999999999998887332 3776654433 335689999
Q ss_pred CCCc-chHHHHHHHHhccccccHHHHHHHhc
Q 002267 799 RDSP-LAIDLSTAILQLSENGDLQKIHNKWL 828 (945)
Q Consensus 799 k~sp-l~~~i~~~i~~l~e~G~~~~i~~~w~ 828 (945)
|++| +.+.||++|.++.++|.+++|.+|||
T Consensus 197 ~~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~ 227 (227)
T 3tql_A 197 KGNQALLLKLNKALAAIKANGVYAAIVQKYF 227 (227)
T ss_dssp TTCHHHHHHHHHHHHHHHHTSHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHhCChHHHHHHhhC
Confidence 9998 99999999999999999999999997
No 54
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=99.85 E-value=2.1e-21 Score=202.26 Aligned_cols=221 Identities=16% Similarity=0.243 Sum_probs=190.8
Q ss_pred CCceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHHHHHHHHHcCcccEEEec
Q 002267 484 GMPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGD 563 (945)
Q Consensus 484 g~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~ 563 (945)
.++|+||+ .+.|+||.+.+. ++.+.|+++|+++++++++|++ +++++ .+|.+++.+|.+|++|+++++
T Consensus 14 ~~~l~v~~--~~~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~--~~~~~-------~~~~~~~~~l~~g~~D~~~~~ 81 (239)
T 3kbr_A 14 SGVLRVAT--TGDYKPFSYRTE-EGGYAGFDVDMAQRLAESLGAK--LVVVP-------TSWPNLMRDFADDRFDIAMSG 81 (239)
T ss_dssp HTEEEEEE--CSEETTTEEECT-TSCEESHHHHHHHHHHHHTTCE--EEEEE-------CCTTTHHHHHHTTCCSEECSS
T ss_pred CCeEEEEE--CCCCCCeeEECC-CCCEEeehHHHHHHHHHHHCCc--eEEEE-------eCHHHHHHHHHCCCcCEEEeC
Confidence 46899999 456889998775 7889999999999999999987 55554 359999999999999999888
Q ss_pred EEEecCcceeEEecccccccceEEEEEccCCCCCceeeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCCccch
Q 002267 564 ITIVTNRTKLVDFTQPYMESGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEFRGPPSQQL 643 (945)
Q Consensus 564 ~~~t~~r~~~~dfs~p~~~~~~~~vv~~~~~~~~~~~fl~PF~~~~W~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 643 (945)
+..+++|.+.++||.||+..+.++++++..
T Consensus 82 ~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~-------------------------------------------------- 111 (239)
T 3kbr_A 82 ISINLERQRQAYFSIPYLRDGKTPITLCSE-------------------------------------------------- 111 (239)
T ss_dssp CBCCHHHHTTCEECSCSEEECEEEEEEGGG--------------------------------------------------
T ss_pred CcCCHHHcCccccchHHhccCcEEEEECCc--------------------------------------------------
Confidence 999999999999999999999999998765
Q ss_pred hhHHHHHHHHhhccccCcccccchhhHHHHHHHHHHhhhhhhhhhhheeeeeccccCCCCChHHhhcCCCCeEEeeCchH
Q 002267 644 VTIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISSTEPIGVQDGSFA 723 (945)
Q Consensus 644 ~~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~~~~dL~~~~~~v~~~~~s~~ 723 (945)
...+++++||...|++||+..|+..
T Consensus 112 -------------------------------------------------------~~~i~~~~dL~~~g~~v~~~~g~~~ 136 (239)
T 3kbr_A 112 -------------------------------------------------------EARFQTLEQIDQPGVTAIVNPGGTN 136 (239)
T ss_dssp -------------------------------------------------------GGGGSSHHHHSSTTCEEEECTTSHH
T ss_pred -------------------------------------------------------ccccCCHHHhcCCCcEEEEcCCCcH
Confidence 1368899999876889999999998
Q ss_pred HHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceeEEecchhhHHHHhccCCccEEEeC--ccccccceEEEecCCC
Q 002267 724 WNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVG--QEFTKSGWGFAFQRDS 801 (945)
Q Consensus 724 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~k~s 801 (945)
..++.+.. +..+++.+++.++++++|.+ |++|+++.+...+.+++++ +.++.++. .++...+++++++| .
T Consensus 137 ~~~l~~~~--~~~~~~~~~~~~~~~~~l~~----grvDa~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~k-~ 208 (239)
T 3kbr_A 137 EKFARANL--KKARILVHPDNVTIFQQIVD----GKADLMMTDAIEARLQSRL-HPELCAVHPQQPFDFAEKAYLLPR-D 208 (239)
T ss_dssp HHHHHHHC--SSSEEEECCCTTTHHHHHHT----TSCSEEEEEHHHHHHHHHH-CTTEEECCCC-CCCCEEECCEECS-C
T ss_pred HHHHHHhC--CCCceEEeCCHHHHHHHHHc----CCcCEEEEchHHHHHHHHh-CCCcEEecCCCCccccceEEEEcC-C
Confidence 88886533 45678889999999999999 9999999999999999887 55666654 34667789999999 5
Q ss_pred c-chHHHHHHHHhccccccHHHHHHHhcC
Q 002267 802 P-LAIDLSTAILQLSENGDLQKIHNKWLT 829 (945)
Q Consensus 802 p-l~~~i~~~i~~l~e~G~~~~i~~~w~~ 829 (945)
+ +.+.||++|.++.++|.+++|.+||+.
T Consensus 209 ~~l~~~ln~~l~~l~~~g~~~~i~~k~~~ 237 (239)
T 3kbr_A 209 EAFKRYVDQWLHIAEQSGLLRQRMEHWLE 237 (239)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHCCcHHHHHHHHhc
Confidence 5 999999999999999999999999986
No 55
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=99.85 E-value=1.4e-20 Score=194.89 Aligned_cols=220 Identities=19% Similarity=0.338 Sum_probs=187.7
Q ss_pred CCceEEEecCccccccceec--cCCCCceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHHHHHHHHHcCcccEEE
Q 002267 484 GMPLRIAVPNRVSYNEFVAK--DKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAV 561 (945)
Q Consensus 484 g~~l~v~~~~~~~~~~~~~~--~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~ 561 (945)
.++|+||+. +|+||.+. +. ++.+.|+++|+++.+++++|++ ++++.. ++|.+++.++.+|++|+++
T Consensus 3 ~~~l~v~~~---~~~P~~~~~~~~-~g~~~G~~~dl~~~i~~~~g~~--~~~~~~------~~~~~~~~~l~~g~~D~~~ 70 (233)
T 1ii5_A 3 AMALKVGVV---GNPPFVFYGEGK-NAAFTGISLDVWRAVAESQKWN--SEYVRQ------NSISAGITAVAEGELDILI 70 (233)
T ss_dssp SCCEEEEEC---CCTTTCEEC------CEESHHHHHHHHHHHHHTCC--EEEEEC------SCHHHHHHHHHTTSCSEEE
T ss_pred CceEEEEec---CCCCeEEEecCC-CCCEEEEeHHHHHHHHHHcCCc--EEEEEe------CCHHHHHHHHHCCCcCEEE
Confidence 367999994 37888887 43 6889999999999999999987 555542 3799999999999999999
Q ss_pred ecEEEecCcc--eeEEecccccccceEEEEEccCCCCCceeeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCC
Q 002267 562 GDITIVTNRT--KLVDFTQPYMESGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEFRGPP 639 (945)
Q Consensus 562 ~~~~~t~~r~--~~~dfs~p~~~~~~~~vv~~~~~~~~~~~fl~PF~~~~W~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 639 (945)
+.+..+.+|. +.++||.||+....++++++...
T Consensus 71 ~~~~~~~~r~~~~~~~~s~p~~~~~~~~~~~~~~~--------------------------------------------- 105 (233)
T 1ii5_A 71 GPISVTPERAAIEGITFTQPYFSSGIGLLIPGTAT--------------------------------------------- 105 (233)
T ss_dssp EEEECCHHHHTSTTEEECCCCEEEEEEEEEEGGGT---------------------------------------------
T ss_pred eeeecCccccccceeEEccceeecCeEEEEECCCC---------------------------------------------
Confidence 8888999998 99999999999999999987761
Q ss_pred ccchhhHHHHHHHHhhccccCcccccchhhHHHHHHHHHHhhhhhhhhhhheeeeeccccCCCCChHHhhcCCCCeEEee
Q 002267 640 SQQLVTIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISSTEPIGVQD 719 (945)
Q Consensus 640 ~~~~~~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~~~~dL~~~~~~v~~~~ 719 (945)
..+++++||. |++||+..
T Consensus 106 ------------------------------------------------------------~~i~~~~dL~--g~~v~~~~ 123 (233)
T 1ii5_A 106 ------------------------------------------------------------PLFRSVGDLK--NKEVAVVR 123 (233)
T ss_dssp ------------------------------------------------------------TTCSSGGGGT--TCEEEEET
T ss_pred ------------------------------------------------------------CCCCCHHHhC--CCeEEEEC
Confidence 2688999997 88999999
Q ss_pred CchHHHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceeEEecchhhHHHHhccCCc-cEEEeCccccccceEEEec
Q 002267 720 GSFAWNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTNC-EFRTVGQEFTKSGWGFAFQ 798 (945)
Q Consensus 720 ~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 798 (945)
|+....++.+. ..+++.+.+.++++++|.+ |++|+++.+...+.+++++... ++.+++..+...+++++++
T Consensus 124 g~~~~~~l~~~----~~~~~~~~~~~~~~~~l~~----g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (233)
T 1ii5_A 124 DTTAVDWANFY----QADVRETNNLTAAITLLQK----KQVEAVMFDRPALIYYTRQNPNLNLEVTEIRVSLEPYGFVLK 195 (233)
T ss_dssp TSHHHHHHHHT----TCEEEEESSHHHHHHHHHT----TSCSEEEEEHHHHHHHHHHCGGGCEEECSCCSEEEEEEEEEE
T ss_pred CccHHHHHHHc----CCCeEEcCCHHHHHHHHHc----CCccEEEeCHHHHHHHHHhCCCCcEEEeCccccccceEEEEc
Confidence 99888888653 3467788999999999999 9999999999999988877332 6888887777788999999
Q ss_pred CCCcchHHHHHHHHhccccccHHHHHHHhcCC
Q 002267 799 RDSPLAIDLSTAILQLSENGDLQKIHNKWLTY 830 (945)
Q Consensus 799 k~spl~~~i~~~i~~l~e~G~~~~i~~~w~~~ 830 (945)
|++++.+.+|++|.++.++|.+++|.+||+..
T Consensus 196 k~~~l~~~~~~~l~~l~~~g~~~~i~~k~~~~ 227 (233)
T 1ii5_A 196 ENSPLQKTINVEMLNLLYSRVIAEFTERWLGP 227 (233)
T ss_dssp TTCTTHHHHHHHHHHHHHTTHHHHHHHHHHC-
T ss_pred CCchHHHHHHHHHHHHHhCCcHHHHHHHHcCC
Confidence 99999999999999999999999999999973
No 56
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=99.84 E-value=1.8e-20 Score=194.31 Aligned_cols=220 Identities=16% Similarity=0.271 Sum_probs=191.8
Q ss_pred CCCceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHHHHHHHHHcCcccEEEe
Q 002267 483 NGMPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVG 562 (945)
Q Consensus 483 ~g~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~ 562 (945)
+.++|+||+ .+.|+||.+.+. ++.+.|+++|+++++++++|++++++. .+|.+++.++.+|++|++ .
T Consensus 9 ~~~~l~v~~--~~~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~---------~~~~~~~~~l~~g~~D~~-~ 75 (234)
T 3h7m_A 9 RHRTIVVGG--DRDYPPYEFIDQ-NGKPAGYNVELTRAIAEVMGMTVEFRL---------GAWSEMFSALKSGRVDVL-Q 75 (234)
T ss_dssp SSSCEEEEE--ETEETTTEEECT-TSCEESHHHHHHHHHHHHHTCCEEEEE---------ECGGGHHHHHHTTSSSEE-E
T ss_pred CCCEEEEEe--cCCCCCeEEECC-CCCEeeeEHHHHHHHHHHcCCceEEEe---------CCHHHHHHHHhCCCeeEE-E
Confidence 457899999 456889988764 688999999999999999998866654 359999999999999995 6
Q ss_pred cEEEecCcceeEEecccccccceEEEEEccCCCCCceeeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCCccc
Q 002267 563 DITIVTNRTKLVDFTQPYMESGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEFRGPPSQQ 642 (945)
Q Consensus 563 ~~~~t~~r~~~~dfs~p~~~~~~~~vv~~~~~~~~~~~fl~PF~~~~W~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 642 (945)
++..+.+|.+.+.||.||.....++++++..
T Consensus 76 ~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~------------------------------------------------- 106 (234)
T 3h7m_A 76 GISWSEKRARQIDFTPPHTIVYHAIFARRDS------------------------------------------------- 106 (234)
T ss_dssp EEECCHHHHTTEEEEEEEEEEEEEEEEESSS-------------------------------------------------
T ss_pred eccCCHhHHhhcCCCccccccceEEEEECCC-------------------------------------------------
Confidence 6888999999999999999999999998876
Q ss_pred hhhHHHHHHHHhhccccCcccccchhhHHHHHHHHHHhhhhhhhhhhheeeeeccccCCCCChHHhhcCCCCeEEeeCch
Q 002267 643 LVTIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISSTEPIGVQDGSF 722 (945)
Q Consensus 643 ~~~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~~~~dL~~~~~~v~~~~~s~ 722 (945)
+.+++++||. |++||+..|+.
T Consensus 107 ---------------------------------------------------------~~~~~~~dL~--g~~i~~~~g~~ 127 (234)
T 3h7m_A 107 ---------------------------------------------------------PPAAGLEDLR--GRKVALHRDGI 127 (234)
T ss_dssp ---------------------------------------------------------CCCSSGGGGT--TSCEEEETTSH
T ss_pred ---------------------------------------------------------CCCCCHHHhC--CCEEEEEeCch
Confidence 3588999996 88999999999
Q ss_pred HHHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceeEEecchhhHHHHhccCC-ccEEEeCccccccceEEEecCCC
Q 002267 723 AWNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTN-CEFRTVGQEFTKSGWGFAFQRDS 801 (945)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~k~s 801 (945)
...++.+.. +..+++.+.+.++++++|.+ |++|+++.+...+.+++++.. .++.++...+...+++++++|++
T Consensus 128 ~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~----g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (234)
T 3h7m_A 128 MHEYLAERG--YGKDLVLTPTPADALRLLAA----GGCDYAVVAMVPGMYIIRENRLTNLVPVARSIAAQRYGYAVRQGD 201 (234)
T ss_dssp HHHHHHTTT--CGGGEEEESSHHHHHHHHHT----TSSSEEEEEHHHHHHHHHHTTCTTEEEEEEEEEEEEEEEEEETTC
T ss_pred HHHHHHhcC--CCceEEEeCCHHHHHHHHHc----CCceEEEeccHHHHHHHHhcCCCceEEeccccCCCceEEEEeCCC
Confidence 888886432 34578889999999999999 999999999999998887733 36888877777888999999998
Q ss_pred c-chHHHHHHHHhccccccHHHHHHHhcC
Q 002267 802 P-LAIDLSTAILQLSENGDLQKIHNKWLT 829 (945)
Q Consensus 802 p-l~~~i~~~i~~l~e~G~~~~i~~~w~~ 829 (945)
+ +.+.||++|.++.++|.+++|.+||+.
T Consensus 202 ~~l~~~l~~~l~~l~~~g~~~~i~~k~~~ 230 (234)
T 3h7m_A 202 AELLARFSEGLAILRKTGQYEAIRAKWLG 230 (234)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHhcc
Confidence 8 999999999999999999999999997
No 57
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=99.84 E-value=3.6e-20 Score=195.51 Aligned_cols=224 Identities=19% Similarity=0.271 Sum_probs=191.9
Q ss_pred CCCceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHHHHHHHHHcCcccEEEe
Q 002267 483 NGMPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVG 562 (945)
Q Consensus 483 ~g~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~ 562 (945)
..++|+|++ .+.|+||.+.+. ++.+.|+++|+++++++++|++ +++++ .+|.+++.++.+|++|++++
T Consensus 27 ~~~~l~v~~--~~~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~--~~~~~-------~~~~~~~~~l~~g~~D~~~~ 94 (259)
T 4dz1_A 27 EGRTLNVAV--SPASPPMLFKSA-DGKLQGIDLELFSSYCQSRHCK--LNITE-------YAWDGMLGAVASGQADVAFS 94 (259)
T ss_dssp TTCEEEEEE--CCCBTTTBEECT-TCCEESHHHHHHHHHHHHHTCE--EEEEE-------CCHHHHHHHHHHTSSSEEEE
T ss_pred cCCeEEEEE--CCCCCCeEEECC-CCCEEEeHHHHHHHHHHHhCCe--EEEEE-------cCHHHHHHHHhCCCCCEEEE
Confidence 457899999 456889988774 6889999999999999999977 55554 46999999999999999998
Q ss_pred cEEEecCcceeEEecccccccceEEEEEccCCCCCceeeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCCccc
Q 002267 563 DITIVTNRTKLVDFTQPYMESGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEFRGPPSQQ 642 (945)
Q Consensus 563 ~~~~t~~r~~~~dfs~p~~~~~~~~vv~~~~~~~~~~~fl~PF~~~~W~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 642 (945)
+++.+++|.+.++||.||+..+..++++++..
T Consensus 95 ~~~~t~~r~~~~~fs~p~~~~~~~~~~~~~~~------------------------------------------------ 126 (259)
T 4dz1_A 95 GISITDKRKKVIDFSEPYYINSFYLVSMANHK------------------------------------------------ 126 (259)
T ss_dssp EEECCHHHHTTEEECCCSEEEEEEEEEETTSC------------------------------------------------
T ss_pred CCcCCHHHhhccccccchhhCceEEEEEcCCC------------------------------------------------
Confidence 89999999999999999999999999987651
Q ss_pred hhhHHHHHHHHhhccccCcccccchhhHHHHHHHHHHhhhhhhhhhhheeeeeccccCCCCChHHhhcCCCCeEEeeCch
Q 002267 643 LVTIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISSTEPIGVQDGSF 722 (945)
Q Consensus 643 ~~~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~~~~dL~~~~~~v~~~~~s~ 722 (945)
..|++++||. |++||+..|+.
T Consensus 127 ---------------------------------------------------------~~i~~~~dL~--g~~v~v~~g~~ 147 (259)
T 4dz1_A 127 ---------------------------------------------------------ITLNNLNELN--KYSIGYPRGMA 147 (259)
T ss_dssp ---------------------------------------------------------CCCCSGGGGG--GSCEEEETTST
T ss_pred ---------------------------------------------------------CCCCCHHHhC--CCEEEEeCCcH
Confidence 3689999997 88999999999
Q ss_pred HHHHHHHhhcc---cc-ccceecCCHHHHHHHHhcCCCCCceeEEecchhhHHHHhccCCccEEEeCccccccceEEEec
Q 002267 723 AWNYLVDELKI---AE-SRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVGQEFTKSGWGFAFQ 798 (945)
Q Consensus 723 ~~~~l~~~~~~---~~-~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (945)
...++.+.... +. .+++.+.+.++++++|.+ |++|+++.+.+.+.+++++...++..........+++++++
T Consensus 148 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~----G~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (259)
T 4dz1_A 148 YSDLIKNDLEPKGYYSLSKVKLYPTYNETMADLKN----GNLDLAFIEEPVYFTFKNKKKMPIESRYVFKNVDQLGIAFK 223 (259)
T ss_dssp HHHHHHHHTGGGTSCCGGGCEEESSHHHHHHHHHH----TSCSEEEEEHHHHHHHHHTSCCCEEEEEEEEEEEEEEEEEE
T ss_pred HHHHHHHhcccccccccceeEecCCHHHHHHHHHc----CCCCEEEecHHHHHHHhccCCCceEeecccCCCceEEEEEe
Confidence 88888654321 11 577888999999999999 99999999999888887764557776666666788999999
Q ss_pred CCCcchHHHHHHHHhccccccHHHHHHHhcCC
Q 002267 799 RDSPLAIDLSTAILQLSENGDLQKIHNKWLTY 830 (945)
Q Consensus 799 k~spl~~~i~~~i~~l~e~G~~~~i~~~w~~~ 830 (945)
|++++.+.||++|.+ ..++.++++.++|...
T Consensus 224 k~~~l~~~ln~~l~~-~g~~~l~~~~~~~~~~ 254 (259)
T 4dz1_A 224 KGSPVRDDFNLWLKE-QGPQKISGIVDSWMKH 254 (259)
T ss_dssp TTCHHHHHHHHHHHH-HCHHHHHHHHHHHTCC
T ss_pred CChHHHHHHHHHHHh-CCCeehHHHHHHHHhh
Confidence 999999999999999 8888999999999874
No 58
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=99.84 E-value=1.8e-20 Score=195.17 Aligned_cols=224 Identities=19% Similarity=0.340 Sum_probs=186.8
Q ss_pred CCceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHHHHHHHHHcCcccEEEec
Q 002267 484 GMPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGD 563 (945)
Q Consensus 484 g~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~ 563 (945)
.++|+||+ .+.|+||.+.+. ++.+.|+++|+++++++++|++ +++.. .+|.+++.+|.+|++|+++++
T Consensus 3 ~~~l~v~~--~~~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~--~~~~~-------~~~~~~~~~l~~g~~D~~~~~ 70 (239)
T 1lst_A 3 PQTVRIGT--DTTYAPFSSKDA-KGEFIGFDIDLGNEMCKRMQVK--CTWVA-------SDFDALIPSLKAKKIDAIISS 70 (239)
T ss_dssp CSEEEEEE--CSCBTTTBEECT-TCCEESHHHHHHHHHHHHHTCE--EEEEE-------CCGGGHHHHHHTTSCSEECSS
T ss_pred cceEEEEE--CCCcCCeeEECC-CCCEeeEHHHHHHHHHHHHCCe--EEEEe-------CCHHHHHHHHhCCCCCEEEEC
Confidence 36799999 456889988764 6789999999999999999977 55554 469999999999999999988
Q ss_pred EEEecCcceeEEecccccccceEEEEEccCCCCCceeeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCCccch
Q 002267 564 ITIVTNRTKLVDFTQPYMESGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEFRGPPSQQL 643 (945)
Q Consensus 564 ~~~t~~r~~~~dfs~p~~~~~~~~vv~~~~~~~~~~~fl~PF~~~~W~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 643 (945)
++.+.+|.+.++||.||+....++++++..
T Consensus 71 ~~~t~~r~~~~~~s~p~~~~~~~l~~~~~~-------------------------------------------------- 100 (239)
T 1lst_A 71 LSITDKRQQEIAFSDKLYAADSRLIAAKGS-------------------------------------------------- 100 (239)
T ss_dssp CBCCHHHHHHCEECSCSBCCCEEEEEETTC--------------------------------------------------
T ss_pred cCcCHHHhhceeecccceeCceEEEEeCCC--------------------------------------------------
Confidence 899999999999999999999999998775
Q ss_pred hhHHHHHHHHhhccccCcccccchhhHHHHHHHHHHhhhhhhhhhhheeeeeccccCCCCChHHhhcCCCCeEEeeCchH
Q 002267 644 VTIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISSTEPIGVQDGSFA 723 (945)
Q Consensus 644 ~~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~~~~dL~~~~~~v~~~~~s~~ 723 (945)
+...+++||. |++||+..|+..
T Consensus 101 --------------------------------------------------------~~~~~~~dL~--g~~v~~~~g~~~ 122 (239)
T 1lst_A 101 --------------------------------------------------------PIQPTLESLK--GKHVGVLQGSTQ 122 (239)
T ss_dssp --------------------------------------------------------CCCSSHHHHT--TCEEEEETTSHH
T ss_pred --------------------------------------------------------CCCCCHHHhC--CCEEEEEcCccH
Confidence 1125899996 889999999988
Q ss_pred HHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceeEEecchhhHHH-HhccCC-ccEEEeCccccc-----cceEEE
Q 002267 724 WNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIEL-FMSKTN-CEFRTVGQEFTK-----SGWGFA 796 (945)
Q Consensus 724 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~-----~~~~~~ 796 (945)
..++.+....+..+++.+.+.++++++|.+ |++|+++.+...+.+ ++.+.. .++.+++..+.. .+++++
T Consensus 123 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~----G~vDa~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 198 (239)
T 1lst_A 123 EAYANDNWRTKGVDVVAYANQDLIYSDLTA----GRLDAALQDEVAASEGFLKQPAGKEYAFAGPSVKDKKYFGDGTGVG 198 (239)
T ss_dssp HHHHHHHTGGGTCEEEEESSHHHHHHHHHT----TSCSEEEEEHHHHHHHTTTSGGGTTEEECSSCBCCHHHHCSSBCCE
T ss_pred HHHHHHhcccCCCeEEEcCCHHHHHHHHHc----CCCCEEEeCcHHHHHHHHhccCCCceEEeccccccccccCcceEEE
Confidence 888866542234567788999999999999 999999999888764 455422 357777655433 368999
Q ss_pred ecCCCc-chHHHHHHHHhccccccHHHHHHHhcCCC
Q 002267 797 FQRDSP-LAIDLSTAILQLSENGDLQKIHNKWLTYN 831 (945)
Q Consensus 797 ~~k~sp-l~~~i~~~i~~l~e~G~~~~i~~~w~~~~ 831 (945)
++|+++ +.+.+|++|.++.++|.+++|.+||+...
T Consensus 199 ~~k~~~~l~~~~~~~l~~l~~~G~~~~i~~k~~~~~ 234 (239)
T 1lst_A 199 LRKDDTELKAAFDKALTELRQDGTYDKMAKKYFDFN 234 (239)
T ss_dssp ECTTCHHHHHHHHHHHHHHHHTTHHHHHHHTTCSSC
T ss_pred EeCCCHHHHHHHHHHHHHHHHCccHHHHHHHHcCCC
Confidence 999998 99999999999999999999999999843
No 59
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=99.84 E-value=1.3e-20 Score=196.99 Aligned_cols=226 Identities=14% Similarity=0.179 Sum_probs=188.6
Q ss_pred CCceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCC-CCccEEEEEcCCCCCCCCHHHHHHHHHcCcccEEEe
Q 002267 484 GMPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLP-YPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVG 562 (945)
Q Consensus 484 g~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~ 562 (945)
.++|+|++. ..|+||.+. .++.+.|+++|+++++++++| ++ +++.+ .+|.+++.++.+|++|++++
T Consensus 7 ~~~l~v~~~--~~~~P~~~~--~~g~~~G~~~dl~~~i~~~~g~~~--~~~~~-------~~~~~~~~~l~~g~~D~~~~ 73 (246)
T 4eq9_A 7 KKEIIVATN--GSPRPFIYE--ENGELTGYEIEVVRAIFKDSDKYD--VKFEK-------TEWSGVFAGLDADRYNMAVN 73 (246)
T ss_dssp CEEEEEEEC--CCSTTTSEE--ETTEEESHHHHHHHHHHTTCSSEE--EEEEE-------CCHHHHHHHHHTTSCSEECS
T ss_pred CCEEEEEeC--CCcCCeEEc--CCCCCcccHHHHHHHHHHHcCCce--EEEEe-------CCHHHHHHHHhCCCcCEEec
Confidence 367999994 468888884 378999999999999999999 88 44554 35999999999999999998
Q ss_pred cEEEecCcceeEEecccccccceEEEEEccCCCCCceeeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCCccc
Q 002267 563 DITIVTNRTKLVDFTQPYMESGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEFRGPPSQQ 642 (945)
Q Consensus 563 ~~~~t~~r~~~~dfs~p~~~~~~~~vv~~~~~~~~~~~fl~PF~~~~W~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 642 (945)
+++.+.+|.+.+.||.||+....++++++..
T Consensus 74 ~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~------------------------------------------------- 104 (246)
T 4eq9_A 74 NLSYTKERAEKYLYAAPIAQNPNVLVVKKDD------------------------------------------------- 104 (246)
T ss_dssp SCCCCHHHHHHEEECCCCEECCEEEEEETTC-------------------------------------------------
T ss_pred ccccChhhhhceeeccceecCceEEEEECCC-------------------------------------------------
Confidence 8999999999999999999999999998744
Q ss_pred hhhHHHHHHHHhhccccCcccccchhhHHHHHHHHHHhhhhhhhhhhheeeeeccccCCCCChHHhhcCCCCeEEeeCch
Q 002267 643 LVTIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISSTEPIGVQDGSF 722 (945)
Q Consensus 643 ~~~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~~~~dL~~~~~~v~~~~~s~ 722 (945)
.++++++||. |++||+..|+.
T Consensus 105 ---------------------------------------------------------~~i~~~~dL~--g~~i~~~~g~~ 125 (246)
T 4eq9_A 105 ---------------------------------------------------------SSIKSLDDIG--GKSTEVVQATT 125 (246)
T ss_dssp ---------------------------------------------------------CSCSSGGGCT--TCEEEECTTCH
T ss_pred ---------------------------------------------------------CCCCCHHHhC--CCEEEEecCcc
Confidence 3688999997 89999999998
Q ss_pred HHHHHHH---hhccccccce-ecCCHHHHHHHHhcCCCCCceeEEecchhhHHHHhccCC-ccEEEeCccccccc-eEEE
Q 002267 723 AWNYLVD---ELKIAESRLV-KLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTN-CEFRTVGQEFTKSG-WGFA 796 (945)
Q Consensus 723 ~~~~l~~---~~~~~~~~~~-~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~ 796 (945)
...++.. .......++. ...+.++++++|.+ |++|+++.+...+.+++++.. .++.++.......+ ++++
T Consensus 126 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~----g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (246)
T 4eq9_A 126 SAKQLEAYNAEHTDNPTILNYTKADFQQIMVRLSD----GQFDYKIFDKIGVETVIKNQGLDNLKVIELPSDQQPYVYPL 201 (246)
T ss_dssp HHHHHHHHHHHCTTSCCEEEECCCCHHHHHHHHHT----TSSSEEEEEHHHHHHHHHHHTCTTEEEEECCCSSCCEECCE
T ss_pred HHHHHHHHHhhCCCcceEEEecCCCHHHHHHHHHc----CCceEEEecHHHHHHHHHhCCCCCceEecCcCCCCCcEEEE
Confidence 8888765 2221112333 23589999999999 999999999999999887733 25888876666555 8899
Q ss_pred ecCCCc-chHHHHHHHHhccccccHHHHHHHhcCCCCCC
Q 002267 797 FQRDSP-LAIDLSTAILQLSENGDLQKIHNKWLTYNECS 834 (945)
Q Consensus 797 ~~k~sp-l~~~i~~~i~~l~e~G~~~~i~~~w~~~~~c~ 834 (945)
++|++| +.+.||++|.++.++|.+++|.+||+....++
T Consensus 202 ~~k~~~~l~~~ln~~l~~l~~~g~~~~i~~k~~~~~~~p 240 (246)
T 4eq9_A 202 LAQGQDELKSFVDKRIKELYKDGTLEKLSKQFFGDTYLP 240 (246)
T ss_dssp EETTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHSSCCCC
T ss_pred EcCCCHHHHHHHHHHHHHHHhCCcHHHHHHHhcCCCCCC
Confidence 999998 99999999999999999999999999854433
No 60
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=99.84 E-value=2.4e-20 Score=197.81 Aligned_cols=221 Identities=16% Similarity=0.217 Sum_probs=188.7
Q ss_pred CCCceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHHHHHHHHHcCcccEEEe
Q 002267 483 NGMPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVG 562 (945)
Q Consensus 483 ~g~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~ 562 (945)
+.++||||+ .+.|+||.+.+. ++.+.|+++|+++++++++|++++++.. .+|.+++.++.+|++|++.
T Consensus 30 ~~~~l~v~~--~~~~~P~~~~~~-~g~~~G~~~dl~~~i~~~lg~~~~~~~~--------~~~~~~~~~l~~G~~D~~~- 97 (267)
T 3mpk_A 30 DHPVVKVAV--LNLFAPFTLFRT-DEQFGGISAAVLQLLQLRTGLDFEIIGV--------DTVEELIAKLRSGEADMAG- 97 (267)
T ss_dssp HCSEEEEEE--ETEETTTEECCT-TCCCBSHHHHHHHHHHHHHCCEEEEEEE--------SSHHHHHHHHHHTSCSEEE-
T ss_pred hCCcEEEEe--CCCCCCeEEECC-CCcEeeeHHHHHHHHHHHHCCeEEEEec--------CCHHHHHHHHHCCCccEEe-
Confidence 346899999 455899998764 6889999999999999999987444433 5799999999999999976
Q ss_pred cEEEecCcceeEEecccccccceEEEEEccCCCCCceeeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCCccc
Q 002267 563 DITIVTNRTKLVDFTQPYMESGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEFRGPPSQQ 642 (945)
Q Consensus 563 ~~~~t~~r~~~~dfs~p~~~~~~~~vv~~~~~~~~~~~fl~PF~~~~W~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 642 (945)
+++.+.+|.+.+.||.||.....++++++..
T Consensus 98 ~~~~t~~r~~~~~fs~p~~~~~~~l~~~~~~------------------------------------------------- 128 (267)
T 3mpk_A 98 ALFVNSARESFLSFSRPYVRNGMVIVTRQDP------------------------------------------------- 128 (267)
T ss_dssp EEECCGGGTTTEEECSCSEEECEEEEEESST-------------------------------------------------
T ss_pred cccCChhhhcceEechhhccCceEEEEECCC-------------------------------------------------
Confidence 7999999999999999999999999998875
Q ss_pred hhhHHHHHHHHhhccccCcccccchhhHHHHHHHHHHhhhhhhhhhhheeeeeccccCCCCChHHhhcCCCCeEEeeCch
Q 002267 643 LVTIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISSTEPIGVQDGSF 722 (945)
Q Consensus 643 ~~~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~~~~dL~~~~~~v~~~~~s~ 722 (945)
+.+++++||. |++||+..|+.
T Consensus 129 ---------------------------------------------------------~~i~~~~dL~--g~~i~v~~g~~ 149 (267)
T 3mpk_A 129 ---------------------------------------------------------DAPVDADHLD--GRTVALVRNSA 149 (267)
T ss_dssp ---------------------------------------------------------TSCSSGGGCT--TCEEEEETTCT
T ss_pred ---------------------------------------------------------CCCCCHHHHC--CCEEEEeCCch
Confidence 4678999997 89999999999
Q ss_pred HHHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceeEEecchhhHHHHhccCC-ccEEEeCccc-cccceEEEecCC
Q 002267 723 AWNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTN-CEFRTVGQEF-TKSGWGFAFQRD 800 (945)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~k~ 800 (945)
...++.+.. +..+++.+++.++++++|.+ |++|+++.+...+.+++++.. .++.++.... ...+++++++|+
T Consensus 150 ~~~~l~~~~--~~~~~~~~~~~~~~l~~L~~----GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~ 223 (267)
T 3mpk_A 150 AIPLLQRRY--PQAKVVTADNPSEAMLMVAN----GQADAVVQTQISASYYVNRYFAGKLRIASALDLPPAEIALATTRG 223 (267)
T ss_dssp HHHHHHHHC--TTSEEEEESSHHHHHHHHHH----TSCSEEEEEHHHHHHHHHHHCTTTEEEEEECSSCCEEEEEEEETT
T ss_pred hHHHHHHhC--CCcEEEEeCCHHHHHHHHHc----CCCCEEEecHHHHHHHHHhcCCCceEEEeccCCCceeEEEEEcCC
Confidence 988886533 45678889999999999999 999999999999998887622 2577776533 467889999999
Q ss_pred Cc-chHHHHHHHHhccccccHHHHHHHhcCC
Q 002267 801 SP-LAIDLSTAILQLSENGDLQKIHNKWLTY 830 (945)
Q Consensus 801 sp-l~~~i~~~i~~l~e~G~~~~i~~~w~~~ 830 (945)
+| +.+.||++|.++.++| +++|.+||+..
T Consensus 224 ~~~l~~~ln~~l~~l~~~~-~~~i~~kw~~~ 253 (267)
T 3mpk_A 224 QTELMSILNKALYSISNDE-LASIISRWRGS 253 (267)
T ss_dssp CHHHHHHHHHHHHTSCHHH-HHHHHHTTC--
T ss_pred CHHHHHHHHHHHHhCCHHH-HHHHHHhhccC
Confidence 98 9999999999999997 99999999984
No 61
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=99.83 E-value=4e-20 Score=190.43 Aligned_cols=218 Identities=23% Similarity=0.421 Sum_probs=188.2
Q ss_pred CceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHHHHHHHHHcCcccEEEecE
Q 002267 485 MPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDI 564 (945)
Q Consensus 485 ~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~~ 564 (945)
++|+||+. +.|+||.+.+ ++.+.|+++|+++.+++++|++++++.. .|.+++.++.+|++|++++++
T Consensus 3 ~~l~v~~~--~~~~P~~~~~--~g~~~G~~~dl~~~~~~~~g~~~~~~~~---------~~~~~~~~l~~g~~D~~~~~~ 69 (226)
T 1wdn_A 3 KKLVVATD--TAFVPFEFKQ--GDLYVGFDVDLWAAIAKELKLDYELKPM---------DFSGIIPALQTKNVDLALAGI 69 (226)
T ss_dssp -CEEEEEE--SSBTTTBEEE--TTEEESHHHHHHHHHHHHHTCCEEEEEE---------CGGGHHHHHHTTSSSEEEEEE
T ss_pred ceEEEEEC--CCCCCeeEec--CCcEEEeeHHHHHHHHHHhCCEEEEEEC---------CHHHHHHHHhCCCCCEEEEcC
Confidence 57999994 5688888876 3789999999999999999988555543 499999999999999999888
Q ss_pred EEecCcceeEEecccccccceEEEEEccCCCCCceeeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCCccchh
Q 002267 565 TIVTNRTKLVDFTQPYMESGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEFRGPPSQQLV 644 (945)
Q Consensus 565 ~~t~~r~~~~dfs~p~~~~~~~~vv~~~~~~~~~~~fl~PF~~~~W~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 644 (945)
..+.+|.+.+.|+.||.....++++++..
T Consensus 70 ~~~~~r~~~~~~~~p~~~~~~~~~~~~~~--------------------------------------------------- 98 (226)
T 1wdn_A 70 TITDERKKAIDFSDGYYKSGLLVMVKANN--------------------------------------------------- 98 (226)
T ss_dssp ECCHHHHTTSEECSCCEEEEEEEEEETTC---------------------------------------------------
T ss_pred cCCHHHhCccccccchhcCceEEEEeCCC---------------------------------------------------
Confidence 88999999999999999999999998765
Q ss_pred hHHHHHHHHhhccccCcccccchhhHHHHHHHHHHhhhhhhhhhhheeeeeccccCCCCChHHhhcCCCCeEEeeCchHH
Q 002267 645 TIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISSTEPIGVQDGSFAW 724 (945)
Q Consensus 645 ~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~~~~dL~~~~~~v~~~~~s~~~ 724 (945)
+.+++++||. |++|++..|+...
T Consensus 99 -------------------------------------------------------~~i~~~~dL~--g~~i~~~~g~~~~ 121 (226)
T 1wdn_A 99 -------------------------------------------------------NDVKSVKDLD--GKVVAVKSGTGSV 121 (226)
T ss_dssp -------------------------------------------------------CSCSSSTTTT--TCEEEEETTSHHH
T ss_pred -------------------------------------------------------CCCCCHHHhC--CCEEEEEcCCcHH
Confidence 3578899996 8899999999988
Q ss_pred HHHHHhhccccccceecCCHHHHHHHHhcCCCCCceeEEecchhhHHHHhccCC-ccEEEeCccccccceEEEecCCCc-
Q 002267 725 NYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTN-CEFRTVGQEFTKSGWGFAFQRDSP- 802 (945)
Q Consensus 725 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~k~sp- 802 (945)
.++.+.. +..+++.+.+.++.+++|.+ |++|+++.+.....+++++.. .++.+++..+...+++++++|++|
T Consensus 122 ~~l~~~~--~~~~~~~~~~~~~~~~~l~~----g~vDa~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~~ 195 (226)
T 1wdn_A 122 DYAKANI--KTKDLRQFPNIDNAYMELGT----NRADAVLHDTPNILYFIKTAGNGQFKAVGDSLEAQQYGIAFPKGSDE 195 (226)
T ss_dssp HHHHHHC--CCSEEEEESSHHHHHHHHHT----TSCSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEEEEEECTTCHH
T ss_pred HHHHHhC--CCceEEEeCCHHHHHHHHHc----CCcCEEEeCcHHHHHHHHhCCCCceEEecCCcccCceEEEEeCCCHH
Confidence 8886542 34567788999999999999 999999999999988887733 368877766667789999999986
Q ss_pred chHHHHHHHHhccccccHHHHHHHhcC
Q 002267 803 LAIDLSTAILQLSENGDLQKIHNKWLT 829 (945)
Q Consensus 803 l~~~i~~~i~~l~e~G~~~~i~~~w~~ 829 (945)
+.+.+|++|.++.++|.+++|.+||+.
T Consensus 196 l~~~~~~~l~~l~~~g~~~~i~~k~~~ 222 (226)
T 1wdn_A 196 LRDKVNGALKTLRENGTYNEIYKKWFG 222 (226)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhCChHHHHHHHHcC
Confidence 999999999999999999999999997
No 62
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=99.82 E-value=1.1e-19 Score=187.82 Aligned_cols=217 Identities=19% Similarity=0.381 Sum_probs=185.9
Q ss_pred CCceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHHHHHHHHHcCcccEEEec
Q 002267 484 GMPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGD 563 (945)
Q Consensus 484 g~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~ 563 (945)
.++|+|++ .+.|+||.+.+. ++.+.|+++|+++++++++|++ +++.. .+|.+++.++.+|++|+++++
T Consensus 5 a~~l~v~~--~~~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~--~~~~~-------~~~~~~~~~l~~g~~D~~~~~ 72 (229)
T 2y7i_A 5 ARTLHFGT--SATYAPYEFVDA-DNKIVGFDIDVANAVCKEMQAE--CSFTN-------QSFDSLIPSLRFKKFDAVIAG 72 (229)
T ss_dssp CCEEEEEE--CCCBTTTBEECT-TSCEESHHHHHHHHHHHHTTCE--EEEEE-------CCGGGHHHHHHTTSCSEECSS
T ss_pred CCcEEEEe--CCCcCCceEECC-CCCCcceeHHHHHHHHHHhCCe--EEEEE-------cCHHHHHHHHhCCCceEEEec
Confidence 46899999 456889988764 6789999999999999999987 45544 359999999999999999977
Q ss_pred EEEecCcceeEEeccccccc-ceEEEEEccCCCCCceeeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCCccc
Q 002267 564 ITIVTNRTKLVDFTQPYMES-GLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEFRGPPSQQ 642 (945)
Q Consensus 564 ~~~t~~r~~~~dfs~p~~~~-~~~~vv~~~~~~~~~~~fl~PF~~~~W~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 642 (945)
+..+.+|.+.+.|+.||+.. ..++++++..
T Consensus 73 ~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~~------------------------------------------------- 103 (229)
T 2y7i_A 73 MDMTPKREQQVSFSQPYYEGLSAVVVTRKGA------------------------------------------------- 103 (229)
T ss_dssp CBCCHHHHTTSEECSCSBCCCCEEEEEETTS-------------------------------------------------
T ss_pred CccCHHHhcceeeccccccCCcEEEEEeCCC-------------------------------------------------
Confidence 88899999999999999999 9998887542
Q ss_pred hhhHHHHHHHHhhccccCcccccchhhHHHHHHHHHHhhhhhhhhhhheeeeeccccCCCCChHHhhcCCCCeEEeeCch
Q 002267 643 LVTIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISSTEPIGVQDGSF 722 (945)
Q Consensus 643 ~~~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~~~~dL~~~~~~v~~~~~s~ 722 (945)
+++++||. |++||+..|+.
T Consensus 104 -----------------------------------------------------------~~~~~dL~--g~~v~~~~g~~ 122 (229)
T 2y7i_A 104 -----------------------------------------------------------YHTFADLK--GKKVGLENGTT 122 (229)
T ss_dssp -----------------------------------------------------------CCSTGGGT--TCEEEEETTSH
T ss_pred -----------------------------------------------------------CCCHHHHC--CCEEEEecCCc
Confidence 57788996 88999999999
Q ss_pred HHHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceeEEecchhhHHHHhccCCccEEEeCcccc-----ccceEEEe
Q 002267 723 AWNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVGQEFT-----KSGWGFAF 797 (945)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 797 (945)
...++.+.. +..+++.+.+.++++++|.+ |++|+++.+...+.+++++ +.++.++...+. ..++++++
T Consensus 123 ~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~----grvDa~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (229)
T 2y7i_A 123 HQRYLQDKQ--QAITPVAYDSYLNAFTDLKN----NRLEGVFGDVAAIGKWLKN-NPDYAIMDERASDPDYYGKGLGIAV 195 (229)
T ss_dssp HHHHHHHHC--TTSEEEEESCHHHHHHHHHT----TSCSEEEEEHHHHHHHHTT-CTTEEECSCCBCCTTTSCCCBCCEE
T ss_pred HHHHHHHhC--CCCeEEecCCHHHHHHHHHc----CCcCEEEechHHHHHHHHh-CCCeEEeccccccccccccceEEEE
Confidence 888886532 34567788999999999999 9999999999999998887 447888775542 24789999
Q ss_pred cCCCc-chHHHHHHHHhccccccHHHHHHHhcC
Q 002267 798 QRDSP-LAIDLSTAILQLSENGDLQKIHNKWLT 829 (945)
Q Consensus 798 ~k~sp-l~~~i~~~i~~l~e~G~~~~i~~~w~~ 829 (945)
+|++| +.+.||++|.++.++|.+++|.+||+.
T Consensus 196 ~~~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~ 228 (229)
T 2y7i_A 196 RKDNDALLQEINAALDKVKASPEYAQMQEKWFT 228 (229)
T ss_dssp CTTCHHHHHHHHHHHHHHHTSHHHHHHHHHHHC
T ss_pred eCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcC
Confidence 99988 999999999999999999999999985
No 63
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=99.81 E-value=2.9e-20 Score=197.68 Aligned_cols=223 Identities=15% Similarity=0.207 Sum_probs=184.1
Q ss_pred CCCceEEEecCccccccceeccCCC--CceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHHHHHHHHHcCcccEE
Q 002267 483 NGMPLRIAVPNRVSYNEFVAKDKSP--PGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAA 560 (945)
Q Consensus 483 ~g~~l~v~~~~~~~~~~~~~~~~~~--~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~ 560 (945)
..++|+|++. +.|+||.+.+.++ +.+.|+++|+++++++++|++ ++++. ..|.+++.++.+|++|++
T Consensus 19 ~~~~l~v~~~--~~~pP~~~~~~~~~~g~~~G~~~dl~~~i~~~~g~~--v~~~~-------~~~~~~~~~l~~G~~D~~ 87 (271)
T 2iee_A 19 DKGKIVVATS--GTLYPTSYHDTDSGSDKLTGYEVEVVREAAKRLGLK--VEFKE-------MGIDGMLTAVNSGQVDAA 87 (271)
T ss_dssp HHTEEEEEEC--SCBTTTBEEETTTTCCEEECHHHHHHHHHHHHTTCE--EEEEE-------CCSTTHHHHHHHTSSSEE
T ss_pred cCCeEEEEEC--CCCCCeeEeCCCCCCCCceeeHHHHHHHHHHHcCCe--EEEEE-------CCHHHHHHHHHCCCcCEE
Confidence 3468999994 5688998875422 889999999999999999987 44444 358999999999999999
Q ss_pred EecEEEecCcceeEEecccccccceEEEEEccCCCCCceeeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCCc
Q 002267 561 VGDITIVTNRTKLVDFTQPYMESGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEFRGPPS 640 (945)
Q Consensus 561 ~~~~~~t~~r~~~~dfs~p~~~~~~~~vv~~~~~~~~~~~fl~PF~~~~W~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 640 (945)
+++++.+.+|.+.++||.||+....++++++...
T Consensus 88 ~~~~~~t~~r~~~~~fs~p~~~~~~~l~~~~~~~---------------------------------------------- 121 (271)
T 2iee_A 88 ANDIDVTKDREEKFAFSTPYKYSYGTAIVRKDDL---------------------------------------------- 121 (271)
T ss_dssp CSSCBCCHHHHTTEEECCCSEEEEEEEEECTTTG----------------------------------------------
T ss_pred EeCCcCChhhccceEEeecceeCCeEEEEECCCC----------------------------------------------
Confidence 9888899999999999999999999999987650
Q ss_pred cchhhHHHHHHHHhhccccCcccccchhhHHHHHHHHHHhhhhhhhhhhheeeeeccccCCCCChHHhhcCCCCeEEeeC
Q 002267 641 QQLVTIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISSTEPIGVQDG 720 (945)
Q Consensus 641 ~~~~~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~~~~dL~~~~~~v~~~~~ 720 (945)
..|++++||. |++||+..|
T Consensus 122 -----------------------------------------------------------~~i~~~~dL~--g~~i~v~~g 140 (271)
T 2iee_A 122 -----------------------------------------------------------SGIKTLKDLK--GKKAAGAAT 140 (271)
T ss_dssp -----------------------------------------------------------GGCSSGGGGT--TCEEESCTT
T ss_pred -----------------------------------------------------------CCCCCHHHhC--CCEEEEeCC
Confidence 1588999996 899999999
Q ss_pred chHHHHHHHhhccccccceecCCHHHH--HHHHhcCCCCCceeEEecchhhHHHHhc-cC-CccEEEe-CccccccceEE
Q 002267 721 SFAWNYLVDELKIAESRLVKLKNMEEY--SIALARGPKGGGVAAIVDELPYIELFMS-KT-NCEFRTV-GQEFTKSGWGF 795 (945)
Q Consensus 721 s~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~g~~~a~~~~~~~~~~~~~-~~-~~~~~~~-~~~~~~~~~~~ 795 (945)
+....++.+ .+. +++.+.+.++. +++|.+ |++| ++.+.....+++. +. ..++.++ ...+...++++
T Consensus 141 ~~~~~~l~~-~~~---~~~~~~~~~~~~l~~~L~~----GrvD-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (271)
T 2iee_A 141 TVYMEVARK-YGA---KEVIYDNATNEQYLKDVAN----GRTD-VILNDYYLQTLALAAFPDLNITIHPDIKYMPNKQAL 211 (271)
T ss_dssp SHHHHHHHH-TTC---EEEECSSCCHHHHHHHHHH----TSSC-EEEEEHHHHHHHHHHCTTSSCEECSSCCEEEEEECC
T ss_pred ccHHHHHHH-cCC---ceEEeCChhhHHHHHHHHc----CCcc-EEeccHHHHHHHHHhCCCCceEEecCCCcccceEEE
Confidence 988888853 332 67788888888 999999 9999 6666555555554 31 2367777 66677788999
Q ss_pred EecCCCc-chHHHHHHHHhccccccHHHHHHHhcC-CCC
Q 002267 796 AFQRDSP-LAIDLSTAILQLSENGDLQKIHNKWLT-YNE 832 (945)
Q Consensus 796 ~~~k~sp-l~~~i~~~i~~l~e~G~~~~i~~~w~~-~~~ 832 (945)
+++|++| +.+.||++|.++.++|.+++|.+||+. ...
T Consensus 212 ~~~k~~~~l~~~ln~al~~l~~~G~~~~i~~k~~~~~~~ 250 (271)
T 2iee_A 212 VMKKSNAALQKKMNEALKEMSKDGSLTKLSKQFFNKADV 250 (271)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTTCCT
T ss_pred EEcCCCHHHHHHHHHHHHHHHHCCCHHHHHHHhCCcccc
Confidence 9999988 999999999999999999999999998 443
No 64
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=99.81 E-value=1.9e-19 Score=185.55 Aligned_cols=219 Identities=23% Similarity=0.387 Sum_probs=182.1
Q ss_pred CceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHHHHHHHHHcCcccEEEecE
Q 002267 485 MPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDI 564 (945)
Q Consensus 485 ~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~~ 564 (945)
++|+||+. +++||.+. . ++.+.|+++|+++.+++++|++++++.. ++|.+++.++.+|++|++++++
T Consensus 3 ~~l~v~~~---~~~P~~~~-~-~g~~~G~~~dl~~~~~~~~g~~~~~~~~--------~~~~~~~~~l~~g~~D~~~~~~ 69 (228)
T 2pyy_A 3 QPLLVATR---VIPPFVLS-N-KGELSGFSIDLWRSIATQIGIESKLIEY--------SSVPELISAIKDNKVNLGIAAI 69 (228)
T ss_dssp -CEEEEEC---CBTTTBBC-C----CBSHHHHHHHHHHHHHTCCEEEEEC--------SSHHHHHHHHHTTSCSEECSSC
T ss_pred ceEEEEec---CCCCeEEe-c-CCceEEEeHHHHHHHHHHhCCcEEEEEc--------CCHHHHHHHHHCCCcCEEEecc
Confidence 57999994 47788776 3 6789999999999999999987544443 3699999999999999999888
Q ss_pred EEecCcceeEEecccccccceEEEEEccCCCCCceeeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCCccchh
Q 002267 565 TIVTNRTKLVDFTQPYMESGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEFRGPPSQQLV 644 (945)
Q Consensus 565 ~~t~~r~~~~dfs~p~~~~~~~~vv~~~~~~~~~~~fl~PF~~~~W~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 644 (945)
..+.+|.+.+.|+.||.....++++++..+.
T Consensus 70 ~~~~~r~~~~~~~~p~~~~~~~~~~~~~~~~------------------------------------------------- 100 (228)
T 2pyy_A 70 SITAEREQNFDFSLPIFASGLQIMVRNLESG------------------------------------------------- 100 (228)
T ss_dssp BCCHHHHHHSEECSCSEEEEEEEEEEC-----------------------------------------------------
T ss_pred ccCHHHHccceecccchhcceEEEEECCccc-------------------------------------------------
Confidence 8899999999999999999999999877521
Q ss_pred hHHHHHHHHhhccccCcccccchhhHHHHHHHHHHhhhhhhhhhhheeeeeccccCCCCChHHhhcCCCCeEEeeCchHH
Q 002267 645 TIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISSTEPIGVQDGSFAW 724 (945)
Q Consensus 645 ~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~~~~dL~~~~~~v~~~~~s~~~ 724 (945)
...+++++||. |++||+..|+...
T Consensus 101 ------------------------------------------------------~~~~~~~~dL~--g~~i~~~~g~~~~ 124 (228)
T 2pyy_A 101 ------------------------------------------------------TGDIRSIDDLP--GKVVATTAGSTAA 124 (228)
T ss_dssp -------------------------------------------------------CCCCSGGGCT--TCEEEEETTSHHH
T ss_pred ------------------------------------------------------cCCcCCHHHcC--CCeEEEEcCcHHH
Confidence 03688999996 8899999999888
Q ss_pred HHHHHhhccccccceecCCHHHHHHHHhcCCCCCceeEEecchhhHHHHhccCC-ccEEEeCccccccceEEEecCCCcc
Q 002267 725 NYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTN-CEFRTVGQEFTKSGWGFAFQRDSPL 803 (945)
Q Consensus 725 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~k~spl 803 (945)
.++.+ .+ .+++.+.+.++++++|.+ |++|+++.+...+.+++.+.. +++.+++..+...+++++++|++++
T Consensus 125 ~~l~~-~~---~~~~~~~~~~~~~~~l~~----g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 196 (228)
T 2pyy_A 125 TYLRE-HH---ISVLEVPKIEEAYKALQT----KKADAVVFDAPVLLFYAANEGKGKVEIVGSILREESYGIILPNNSPY 196 (228)
T ss_dssp HHHHH-TT---CEEEEESSHHHHHHHHHT----TSSSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEECCEECTTCTT
T ss_pred HHHHH-cC---CceEecCCHHHHHHHHHc----CCCCEEEecHHHHHHHHHhCCCCcEEEecccccceeEEEEEeCChHH
Confidence 88864 22 356778899999999999 999999999999888877633 3677777666677889999999999
Q ss_pred hHHHHHHHHhccccccHHHHHHHhcC
Q 002267 804 AIDLSTAILQLSENGDLQKIHNKWLT 829 (945)
Q Consensus 804 ~~~i~~~i~~l~e~G~~~~i~~~w~~ 829 (945)
.+.+|++|.++.++|.+++|.+||+.
T Consensus 197 ~~~~~~~l~~l~~~g~~~~i~~k~~~ 222 (228)
T 2pyy_A 197 RKPINQALLNLKENGTYQSLYDKWFD 222 (228)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHcC
Confidence 99999999999999999999999997
No 65
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=99.80 E-value=5.5e-19 Score=187.90 Aligned_cols=221 Identities=16% Similarity=0.299 Sum_probs=188.9
Q ss_pred CCCceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHHHHHHHHHcCcccEEEe
Q 002267 483 NGMPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVG 562 (945)
Q Consensus 483 ~g~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~ 562 (945)
..++|+|++. +.|+||.+.+ ++.+.|+++|+++.+++++|+++ +++. ..|.+++.++.+|++|++++
T Consensus 40 ~~~~l~v~~~--~~~~P~~~~~--~g~~~G~~~dl~~~i~~~~g~~v--~~~~-------~~~~~~~~~l~~G~~D~~~~ 106 (272)
T 2pvu_A 40 TKKKVVVGTD--AAFAPFEYMQ--KGKIVGFDVDLLDAVMKAAGLDY--ELKN-------IGWDPLFASLQSKEVDMGIS 106 (272)
T ss_dssp CCCCEEEEEC--CCBTTTBEEE--TTEEESHHHHHHHHHHHHHTCCE--EEEE-------CCHHHHHHHHHHTSSSEECS
T ss_pred cCCeEEEEEC--CCCCCeEEec--CCeEEEEHHHHHHHHHHHhCCce--EEEE-------CCHHHHHHHHhCCCCCEEEe
Confidence 3468999994 5688888774 57899999999999999999874 4444 34999999999999999998
Q ss_pred cEEEecCcceeEEecccccccceEEEEEccCCCCCceeeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCCccc
Q 002267 563 DITIVTNRTKLVDFTQPYMESGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEFRGPPSQQ 642 (945)
Q Consensus 563 ~~~~t~~r~~~~dfs~p~~~~~~~~vv~~~~~~~~~~~fl~PF~~~~W~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 642 (945)
++..+.+|.+.+.|+.||.....++++++..
T Consensus 107 ~~~~~~~r~~~~~~s~p~~~~~~~l~~~~~~------------------------------------------------- 137 (272)
T 2pvu_A 107 GITITDERKQSYDFSDPYFEATQVILVKQGS------------------------------------------------- 137 (272)
T ss_dssp SCBCCHHHHTTEEECSCCEEECEEEEEETTC-------------------------------------------------
T ss_pred CCcCCHHHHhcCccchhhhccceEEEEECCC-------------------------------------------------
Confidence 8888899999999999999999999998765
Q ss_pred hhhHHHHHHHHhhccccCcccccchhhHHHHHHHHHHhhhhhhhhhhheeeeeccccCCCCChHHhhcCCCCeEEeeCch
Q 002267 643 LVTIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISSTEPIGVQDGSF 722 (945)
Q Consensus 643 ~~~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~~~~dL~~~~~~v~~~~~s~ 722 (945)
++++++||. |++|++..|+.
T Consensus 138 ----------------------------------------------------------~i~~~~dL~--g~~i~~~~g~~ 157 (272)
T 2pvu_A 138 ----------------------------------------------------------PVKNALDLK--GKTIGVQNATT 157 (272)
T ss_dssp ----------------------------------------------------------CCCSGGGGT--TSCEEEETTSH
T ss_pred ----------------------------------------------------------CCCCHHHhC--CCeEEEEcCch
Confidence 478999996 88999999999
Q ss_pred HHHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceeEEecchhhHHHHhccCCc-cEEEeCccc--cccceEEEecC
Q 002267 723 AWNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTNC-EFRTVGQEF--TKSGWGFAFQR 799 (945)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~k 799 (945)
...++.+..+ ...+++.+.+.++.+++|.+ |++|+++.+...+.+++++... ++.++.... ...+++++++|
T Consensus 158 ~~~~l~~~~~-~~~~i~~~~~~~~~~~~l~~----G~vDa~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~k 232 (272)
T 2pvu_A 158 GQEAAEKLFG-KGPHIKKFETTVVAIMELLN----GGVDAVITDNAVANEYVKNNPNKKLQVIEDPKNFASEYYGMIFPK 232 (272)
T ss_dssp HHHHHHHHHC-SSTTEEEESSHHHHHHHHHT----TSCSEEEEEHHHHHHHHHHCGGGCEEEECCTTTSCCEEECCEEET
T ss_pred HHHHHHHhcC-CCCeEEEcCCHHHHHHHHHc----CCccEEEeCHHHHHHHHHhCCCCceEEeccccccCCceEEEEEeC
Confidence 8888876544 34667788999999999999 9999999999999888877332 488887653 56678999999
Q ss_pred CCcchHHHHHHHHhccccccHHHHHHHhcCC
Q 002267 800 DSPLAIDLSTAILQLSENGDLQKIHNKWLTY 830 (945)
Q Consensus 800 ~spl~~~i~~~i~~l~e~G~~~~i~~~w~~~ 830 (945)
+..+.+.+|++|.++.++|.+++|.+||+..
T Consensus 233 ~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~ 263 (272)
T 2pvu_A 233 NSELKAKVDEALKNVINSGKYTEIYKKWFGK 263 (272)
T ss_dssp TCTTHHHHHHHHHHHHHTTHHHHHHHHHHSS
T ss_pred CHHHHHHHHHHHHHHHhCChHHHHHHHHcCC
Confidence 9449999999999999999999999999973
No 66
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=99.80 E-value=6e-19 Score=186.96 Aligned_cols=219 Identities=17% Similarity=0.242 Sum_probs=190.3
Q ss_pred CCCceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHHHHHHHHHcCcccEEEe
Q 002267 483 NGMPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVG 562 (945)
Q Consensus 483 ~g~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~ 562 (945)
..++|+|++ .+.++||.+.+. ++.+.|+++|+++.+++++|++ +++.. .+|.+++.++.+|++|++++
T Consensus 29 ~~~~l~v~~--~~~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~--~~~~~-------~~~~~~~~~l~~g~~D~~~~ 96 (268)
T 3qax_A 29 RNRIWIVGT--NATYPPFEYVDA-QGEVVGFDIDLAKAISEKLGKQ--LEVRE-------FAFDALILNLKKHRIDAILA 96 (268)
T ss_dssp --CEEEEEE--CSCBTTTBEECT-TSCEESHHHHHHHHHHHHHTCE--EEEEE-------CCGGGHHHHHHHTSSSEECS
T ss_pred cCCeEEEEE--CCCCCCceEECC-CCCEEEEEHHHHHHHHHHhCCe--EEEEe-------cCHHHHHHHHhCCCccEEee
Confidence 346899999 456788888764 7889999999999999999977 55554 35999999999999999998
Q ss_pred cEEEecCcceeEEeccccc--ccceEEEEEccCCCCCceeeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCCc
Q 002267 563 DITIVTNRTKLVDFTQPYM--ESGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEFRGPPS 640 (945)
Q Consensus 563 ~~~~t~~r~~~~dfs~p~~--~~~~~~vv~~~~~~~~~~~fl~PF~~~~W~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 640 (945)
++..+.+|.+.++| .||+ ..+..+++++..
T Consensus 97 ~~~~~~~r~~~~~~-~p~~~~~~~~~~~~~~~~----------------------------------------------- 128 (268)
T 3qax_A 97 GMSITPSRQKEIAL-LPYYGDEVQELMVVSKRS----------------------------------------------- 128 (268)
T ss_dssp CCBCCHHHHTTSEE-EEEECCCBCEEEEEEETT-----------------------------------------------
T ss_pred cCccCHhHhcceee-ecceecccceEEEEECCC-----------------------------------------------
Confidence 89999999999999 9999 899999998875
Q ss_pred cchhhHHHHHHHHhhccccCcccccchhhHHHHHHHHHHhhhhhhhhhhheeeeeccccCCCCChHHhhcCCCCeEEeeC
Q 002267 641 QQLVTIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISSTEPIGVQDG 720 (945)
Q Consensus 641 ~~~~~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~~~~dL~~~~~~v~~~~~ 720 (945)
..+++++||. |++||+..|
T Consensus 129 -----------------------------------------------------------~~i~~~~dL~--g~~i~~~~g 147 (268)
T 3qax_A 129 -----------------------------------------------------------LETPVLPLTQ--YSSVAVQTG 147 (268)
T ss_dssp -----------------------------------------------------------SCSCCCCGGG--SSCEEEETT
T ss_pred -----------------------------------------------------------CCCCCHHHhC--CCEEEEecC
Confidence 3688999997 889999999
Q ss_pred chHHHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceeEEecchhhHHHHhccCCccEEEeCccccccc----eEEE
Q 002267 721 SFAWNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVGQEFTKSG----WGFA 796 (945)
Q Consensus 721 s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 796 (945)
+....++.. .+..+++.+.+.++++++|.+ |++|+++.+...+.+++++ +.++.+++..+...+ ++++
T Consensus 148 ~~~~~~l~~---~~~~~~~~~~~~~~~~~~l~~----G~vDa~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 219 (268)
T 3qax_A 148 TYQEHYLLS---QPGICVRSFDSTLEVIMEVRY----GKSPVAVLEPSVGRVVLKD-FPNLVATRLELPPECWVLGCGLG 219 (268)
T ss_dssp SHHHHHHHT---STTCCEEEESCHHHHHHHHHT----TSSSEEEECHHHHHHHGGG-CTTEEEEEEECCGGGCBCCEEEE
T ss_pred cHHHHHHHh---CCCceEEecCCHHHHHHHHHc----CCCCEEEecHHHHHHHHHh-CCCcEEecCccCcccccccEEEE
Confidence 998888865 344677888999999999999 9999999999999999888 666777776666666 9999
Q ss_pred ecCCCc-chHHHHHHHHhccccccHHHHHHHhcCC
Q 002267 797 FQRDSP-LAIDLSTAILQLSENGDLQKIHNKWLTY 830 (945)
Q Consensus 797 ~~k~sp-l~~~i~~~i~~l~e~G~~~~i~~~w~~~ 830 (945)
++|++| +.+.+|++|.++.++|.+++|.++|+..
T Consensus 220 ~~k~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~ 254 (268)
T 3qax_A 220 VAKDRPEEIQTIQQAITDLKSEGVIQSLTKKWQLS 254 (268)
T ss_dssp ECTTCHHHHHHHHHHHHHHHHTTHHHHHHHHTTCS
T ss_pred EeCCCHHHHHHHHHHHHHHHHCCcHHHHHHHHcCC
Confidence 999988 9999999999999999999999999973
No 67
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=99.79 E-value=3.3e-19 Score=187.81 Aligned_cols=222 Identities=17% Similarity=0.190 Sum_probs=185.3
Q ss_pred CCceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCC-ccEEEEEcCCCCCCCCHHHHHHHHHcCcccEEEe
Q 002267 484 GMPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYP-VPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVG 562 (945)
Q Consensus 484 g~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~ 562 (945)
.++|+|++. .|+||.+.+. ++.+.|+++|+++++++++|++ +++.. ..|.+++.++.+|++|++++
T Consensus 12 ~~~l~v~~~---~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~g~~~~~~~~---------~~~~~~~~~l~~g~~D~~~~ 78 (257)
T 2q88_A 12 QGFARIAIA---NEPPFTAVGA-DGKVSGAAPDVAREIFKRLGVADVVASI---------SEYGAMIPGLQAGRHDAITA 78 (257)
T ss_dssp HTEEEEEEC---CCTTTCEECT-TCCEESHHHHHHHHHHHHTTCCEEEEEE---------CCGGGHHHHHHTTSCSEECS
T ss_pred CCeEEEEcC---CCCCeeEECC-CCCcccccHHHHHHHHHHcCCCeeeEEe---------CCHHHHHHHHHCCCcCEEEe
Confidence 367999993 5788888764 6889999999999999999987 55544 34999999999999999987
Q ss_pred cEEEecCcceeEEecccccccceEEEEEccCCCCCceeeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCCccc
Q 002267 563 DITIVTNRTKLVDFTQPYMESGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEFRGPPSQQ 642 (945)
Q Consensus 563 ~~~~t~~r~~~~dfs~p~~~~~~~~vv~~~~~~~~~~~fl~PF~~~~W~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 642 (945)
++..+.+|.+.++||.||+....++++++...
T Consensus 79 ~~~~t~~r~~~~~~s~p~~~~~~~~~~~~~~~------------------------------------------------ 110 (257)
T 2q88_A 79 GLFMKPERCAAVAYSQPILCDAEAFALKKGNP------------------------------------------------ 110 (257)
T ss_dssp CCBCCHHHHTTSEECSCCCEECEEEEEETTCT------------------------------------------------
T ss_pred cccCCHHHHhccccccchhcCceEEEEECCCc------------------------------------------------
Confidence 88899999999999999999999999987651
Q ss_pred hhhHHHHHHHHhhccccCcccccchhhHHHHHHHHHHhhhhhhhhhhheeeeeccccCCCCChHHhhcC-CCCeEEeeCc
Q 002267 643 LVTIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISS-TEPIGVQDGS 721 (945)
Q Consensus 643 ~~~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~~~~dL~~~-~~~v~~~~~s 721 (945)
..+++++||..+ |++||+..|+
T Consensus 111 ---------------------------------------------------------~~i~~~~dL~~~~g~~i~~~~g~ 133 (257)
T 2q88_A 111 ---------------------------------------------------------LGLKSYKDIADNPDAKIGAPGGG 133 (257)
T ss_dssp ---------------------------------------------------------TCCCBHHHHHHCTTCCEEECTTS
T ss_pred ---------------------------------------------------------cCCCCHHHHhccCCceEEEECCc
Confidence 258899999855 7899999999
Q ss_pred hHHHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceeEEecchhhHHHHhccCCc-cEEEeCcccc--ccceEEEec
Q 002267 722 FAWNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTNC-EFRTVGQEFT--KSGWGFAFQ 798 (945)
Q Consensus 722 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~ 798 (945)
....++.+ .+.+..+++.+.+.++++++|.+ |++|+++.+...+.+++++... .+..+.+... ..+++++++
T Consensus 134 ~~~~~l~~-~~~~~~~~~~~~~~~~~~~~l~~----grvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (257)
T 2q88_A 134 TEEKLALE-AGVPRDRVIVVPDGQSGLKMLQD----GRIDVYSLPVLSINDLVSKANDPNVEVLAPVEGAPVYCDGAAFR 208 (257)
T ss_dssp HHHHHHHH-TTCCGGGEEECSSHHHHHHHHHH----TSCSEEEEEHHHHHHHHHHHCCTTEEEECSCBTCCCEEBCCEEC
T ss_pred ccHHHHHh-cCCCCceEEEcCCHHHHHHHHHc----CCCcEEEcCHHHHHHHHHhCCCcceeeecccCCccccceEEEEc
Confidence 98888854 44555678889999999999999 9999999999999888776222 4555543211 245778999
Q ss_pred CCCc-chHHHHHHHHhccccccHHHHHHHhc
Q 002267 799 RDSP-LAIDLSTAILQLSENGDLQKIHNKWL 828 (945)
Q Consensus 799 k~sp-l~~~i~~~i~~l~e~G~~~~i~~~w~ 828 (945)
|+++ +.+.||++|.++.++|.+++|.+||.
T Consensus 209 k~~~~l~~~l~~~l~~~~~~g~~~~i~~k~~ 239 (257)
T 2q88_A 209 KGDEALRDAFDVELAKLKESGEFAKIIEPYG 239 (257)
T ss_dssp GGGHHHHHHHHHHHHHHHHHTHHHHHHGGGT
T ss_pred CCCHHHHHHHHHHHHHHHhCCcHHHHHHHhC
Confidence 9877 99999999999999999999999993
No 68
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=99.78 E-value=7.3e-19 Score=189.08 Aligned_cols=218 Identities=20% Similarity=0.248 Sum_probs=188.2
Q ss_pred CCceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhC---CCCccEEEEEcCCCCCCCCHHHHHHHHHcCcccEE
Q 002267 484 GMPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLL---PYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAA 560 (945)
Q Consensus 484 g~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~l~~~l---~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~ 560 (945)
.++|+|++. +.|+||.+.+. ++...|+++|+++.+++++ |+++ ++.+ ..|.+++.++.+|++|++
T Consensus 43 ~~~l~v~~~--~~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~~~~g~~~--~~~~-------~~~~~~~~~l~~G~~D~~ 110 (292)
T 1xt8_A 43 NGVVRIGVF--GDKPPFGYVDE-KGNNQGYDIALAKRIAKELFGDENKV--QFVL-------VEAANRVEFLKSNKVDII 110 (292)
T ss_dssp HSSEEEEEC--SEETTTEEECT-TSCEESHHHHHHHHHHHHHHSCTTCE--EEEE-------CCGGGHHHHHHTTSCSEE
T ss_pred CCeEEEEEC--CCCCCeeEECC-CCCEeeEhHHHHHHHHHHhccCCceE--EEEE-------cCHHHHHHHHhCCCeeEE
Confidence 357999994 55889988764 6889999999999999999 9874 4444 348999999999999999
Q ss_pred EecEEEecCcceeEEecccccccceEEEEEccCCCCCceeeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCCc
Q 002267 561 VGDITIVTNRTKLVDFTQPYMESGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEFRGPPS 640 (945)
Q Consensus 561 ~~~~~~t~~r~~~~dfs~p~~~~~~~~vv~~~~~~~~~~~fl~PF~~~~W~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 640 (945)
++++..+.+|.+.++|+.||.....++++++..
T Consensus 111 ~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~----------------------------------------------- 143 (292)
T 1xt8_A 111 LANFTQTPQRAEQVDFCSPYMKVALGVAVPKDS----------------------------------------------- 143 (292)
T ss_dssp CSSCBCCHHHHTTEEECCCCEEEEEEEEEETTC-----------------------------------------------
T ss_pred eecCCCCcchhcceeeeccceecceEEEEECCC-----------------------------------------------
Confidence 888888899999999999999999999998754
Q ss_pred cchhhHHHHHHHHhhccccCcccccchhhHHHHHHHHHHhhhhhhhhhhheeeeeccccCCCCChHHhhcCCCCeEEeeC
Q 002267 641 QQLVTIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISSTEPIGVQDG 720 (945)
Q Consensus 641 ~~~~~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~~~~dL~~~~~~v~~~~~ 720 (945)
++++++||. |++||+..|
T Consensus 144 ------------------------------------------------------------~i~~~~dL~--g~~i~~~~g 161 (292)
T 1xt8_A 144 ------------------------------------------------------------NITSVEDLK--DKTLLLNKG 161 (292)
T ss_dssp ------------------------------------------------------------CCCSSGGGT--TSEEEEETT
T ss_pred ------------------------------------------------------------CCCCHHHhC--CCEEEEeCC
Confidence 578899997 889999999
Q ss_pred chHHHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceeEEecchhhHHHHhccCCccEEEeCccccccce-EEEecC
Q 002267 721 SFAWNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVGQEFTKSGW-GFAFQR 799 (945)
Q Consensus 721 s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~k 799 (945)
+....++.+.. +..+++.+.+.++.+++|.+ |++|+++.+...+.+++.+ ..++.++...+...++ +++++|
T Consensus 162 ~~~~~~l~~~~--~~~~~~~~~~~~~~~~~L~~----G~vDa~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~k 234 (292)
T 1xt8_A 162 TTADAYFTQNY--PNIKTLKYDQNTETFAALMD----KRGDALSHDNTLLFAWVKD-HPDFKMGIKELGNKDVIAPAVKK 234 (292)
T ss_dssp SHHHHHHHHHC--TTSEEEEESSHHHHHHHHHT----TSSSEEEEEHHHHHHHHHH-CTTEEEEEEEEEEEEEECCEEET
T ss_pred CcHHHHHHHhC--CCceEEEcCCHHHHHHHHHc----CCccEEEecHHHHHHHHHh-CCCeEEcccccccCceeEEEEeC
Confidence 98888886533 34567788999999999999 9999999999999998877 4567777766666777 999999
Q ss_pred CCc-chHHHHHHHHhccccccHHHHHHHhcC
Q 002267 800 DSP-LAIDLSTAILQLSENGDLQKIHNKWLT 829 (945)
Q Consensus 800 ~sp-l~~~i~~~i~~l~e~G~~~~i~~~w~~ 829 (945)
++| +.+.+|++|.++.++|.+++|.++|+.
T Consensus 235 ~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~ 265 (292)
T 1xt8_A 235 GDKELKEFIDNLIIKLGQEQFFHKAYDETLK 265 (292)
T ss_dssp TCHHHHHHHHHHHHHHHTTTHHHHHHHHHTG
T ss_pred CCHHHHHHHHHHHHHHHhCcHHHHHHHHhcC
Confidence 988 999999999999999999999999998
No 69
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=99.78 E-value=1.5e-18 Score=186.04 Aligned_cols=225 Identities=19% Similarity=0.237 Sum_probs=189.4
Q ss_pred CCceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHh----CCC-CccEEEEEcCCCCCCCCHHHHHHHHHcCccc
Q 002267 484 GMPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNL----LPY-PVPHNYIMYGNGKRNPIYNDIVQQVALNKFD 558 (945)
Q Consensus 484 g~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~l~~~----l~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D 558 (945)
.++|+||+ ...|+||.+.+. ++.+.|+++|+++++++. +|. .+++++++ ..|.+++.++.+|++|
T Consensus 16 ~~~l~v~~--~~~~~P~~~~~~-~g~~~G~~~dl~~~ia~~l~~~~G~~~~~v~~~~-------~~~~~~~~~l~~g~~D 85 (287)
T 2vha_A 16 NGVIVVGH--RESSVPFSYYDN-QQKVVGYSQDYSNAIVEAVKKKLNKPDLQVKLIP-------ITSQNRIPLLQNGTFD 85 (287)
T ss_dssp HTEEEEEE--CSEETTTEEECS-SSCEESHHHHHHHHHHHHHHHHTTCTTCEEEEEE-------CCTTTHHHHHHTTSCS
T ss_pred CCeEEEEE--cCCCCCceEECC-CCCcccccHHHHHHHHHHHHHhcCCCCceEEEEE-------CCHHHHHHHHHCCCee
Confidence 36799999 345889988764 678999999999999976 562 13466665 4588999999999999
Q ss_pred EEEecEEEecCcceeEEecccccccceEEEEEccCCCCCceeeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCCCC
Q 002267 559 AAVGDITIVTNRTKLVDFTQPYMESGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEFRGP 638 (945)
Q Consensus 559 ~~~~~~~~t~~r~~~~dfs~p~~~~~~~~vv~~~~~~~~~~~fl~PF~~~~W~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 638 (945)
+++++++.+.+|.+.++||.||+..+.++++++..
T Consensus 86 ~~~~~~~~t~~r~~~~~~s~p~~~~~~~l~~~~~~--------------------------------------------- 120 (287)
T 2vha_A 86 FECGSTTNNVERQKQAAFSDTIFVVGTRLLTKKGG--------------------------------------------- 120 (287)
T ss_dssp EECSSCBCCHHHHTTCEEEEEEEEEEEEEEEETTS---------------------------------------------
T ss_pred EEeccccCCcchhhcccccceeeecceEEEEECCC---------------------------------------------
Confidence 99988888999999999999999999999998765
Q ss_pred CccchhhHHHHHHHHhhccccCcccccchhhHHHHHHHHHHhhhhhhhhhhheeeeeccccCCCCChHHhhcCCCCeEEe
Q 002267 639 PSQQLVTIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISSTEPIGVQ 718 (945)
Q Consensus 639 ~~~~~~~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~~~~dL~~~~~~v~~~ 718 (945)
+|++++||. |++||+.
T Consensus 121 --------------------------------------------------------------~i~sl~dL~--g~~v~~~ 136 (287)
T 2vha_A 121 --------------------------------------------------------------DIKDFADLK--GKAVVVT 136 (287)
T ss_dssp --------------------------------------------------------------SCCSGGGGT--TCEEEEE
T ss_pred --------------------------------------------------------------CCCCHHHcC--CCEEEEe
Confidence 578999997 8899999
Q ss_pred eCchHHHHHHHhhc--cccccceecCCHHHHHHHHhcCCCCCceeEEecchhhHHHHhccCC--ccEEEeCccccccceE
Q 002267 719 DGSFAWNYLVDELK--IAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTN--CEFRTVGQEFTKSGWG 794 (945)
Q Consensus 719 ~~s~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 794 (945)
.|+....++..... ....+++.+.+.++++++|.+ |++|+++.+...+.+++++.. .++.+++..+...+++
T Consensus 137 ~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~----G~vDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (287)
T 2vha_A 137 SGTTSEVLLNKLNEEQKMNMRIISAKDHGDSFRTLES----GRAVAFMMDDALLAGERAKAKKPDNWDIVGKPQSQEAYG 212 (287)
T ss_dssp TTSHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHT----TSCSEEEEEHHHHHHHHTTSSSGGGEEEESCCSCEEEEE
T ss_pred CCCcHHHHHHHHhhccCCCceEEEcCCHHHHHHHHHc----CCeeEEEeChHHHHHHHHhCCCCCceEecCCccccCceE
Confidence 99988877764321 123567788999999999999 999999999999888887632 3688888777778899
Q ss_pred EEecCCCc-chHHHHHHHHhccccccHHHHHHHhcCCC
Q 002267 795 FAFQRDSP-LAIDLSTAILQLSENGDLQKIHNKWLTYN 831 (945)
Q Consensus 795 ~~~~k~sp-l~~~i~~~i~~l~e~G~~~~i~~~w~~~~ 831 (945)
++++|+++ +.+.||++|.++.++|.+++|.+||+...
T Consensus 213 ~~~~k~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~~ 250 (287)
T 2vha_A 213 CMLRKDDPQFKKLMDDTIAQVQTSGEAEKWFDKWFKNP 250 (287)
T ss_dssp EEECTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHSC
T ss_pred EEEeCCCHHHHHHHHHHHHHHHhCchHHHHHHHHcCCC
Confidence 99999988 99999999999999999999999999843
No 70
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=99.78 E-value=1.3e-18 Score=184.62 Aligned_cols=220 Identities=22% Similarity=0.326 Sum_probs=188.3
Q ss_pred CCceEEEecCcccccccee---ccCCCCceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHHHHHHHHHcCcccEE
Q 002267 484 GMPLRIAVPNRVSYNEFVA---KDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAA 560 (945)
Q Consensus 484 g~~l~v~~~~~~~~~~~~~---~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~ 560 (945)
.++|+|++. +.|+||.+ .+. ++.+.|+++|+++.+++++|++ +++++ .+|.+++.++.+|++|++
T Consensus 38 ~~~l~v~~~--~~~~P~~~~~~~~~-~g~~~G~~~dl~~~~~~~~g~~--~~~~~-------~~~~~~~~~l~~g~~D~~ 105 (269)
T 4i62_A 38 KGKLVVALN--PDFAPFEYQKVVDG-KNQIVGSDIELAKAIATELGVE--LELSP-------MSFDNVLASVQSGKADLA 105 (269)
T ss_dssp HTEEEEEEC--SCBTTTBEEEEETT-EEEEESHHHHHHHHHHHHHTCE--EEEEE-------CCHHHHHHHHHTTSCSEE
T ss_pred CCeEEEEec--CCCCCceeecccCC-CCcEeeecHHHHHHHHHHHCCc--eEEEE-------cCHHHHHHHHhCCCccEE
Confidence 357999994 56788887 543 6789999999999999999977 55554 459999999999999999
Q ss_pred EecEEEecCcceeEEecccccccceEEEEEccCCCCCceeeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCCc
Q 002267 561 VGDITIVTNRTKLVDFTQPYMESGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEFRGPPS 640 (945)
Q Consensus 561 ~~~~~~t~~r~~~~dfs~p~~~~~~~~vv~~~~~~~~~~~fl~PF~~~~W~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 640 (945)
++++..+.+|.+.+.|+.||+....++++++..
T Consensus 106 ~~~~~~~~~r~~~~~~s~p~~~~~~~~~~~~~~----------------------------------------------- 138 (269)
T 4i62_A 106 ISGVSKTDERSKVFDFSTPYYTAKNKLIVKKSD----------------------------------------------- 138 (269)
T ss_dssp CSSCBCCHHHHTTEEECSCCEECCEEEEEEGGG-----------------------------------------------
T ss_pred ecCCcCCHhHhhceecccchhhcceEEEEECCc-----------------------------------------------
Confidence 988999999999999999999999999998774
Q ss_pred cchhhHHHHHHHHhhccccCcccccchhhHHHHHHHHHHhhhhhhhhhhheeeeeccccCCCCChHHhhcCCCCeEEeeC
Q 002267 641 QQLVTIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISSTEPIGVQDG 720 (945)
Q Consensus 641 ~~~~~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~~~~dL~~~~~~v~~~~~ 720 (945)
...|++++||. |++||+..|
T Consensus 139 ----------------------------------------------------------~~~i~~~~dL~--g~~i~~~~g 158 (269)
T 4i62_A 139 ----------------------------------------------------------LATYQSVNDLA--QKKVGAQKG 158 (269)
T ss_dssp ----------------------------------------------------------TTTCSSGGGGC---CEEEEETT
T ss_pred ----------------------------------------------------------cccccCHHHhC--CCeEEEecC
Confidence 13689999996 899999999
Q ss_pred chHHHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceeEEecchhhHHHHhccCCccEEEeCcccc---ccceEEEe
Q 002267 721 SFAWNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVGQEFT---KSGWGFAF 797 (945)
Q Consensus 721 s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 797 (945)
+....++.+.. +..+++.+.+.++++++|.+ |++|+++.+.+.+.+++.+ +..+.+....+. ..++++++
T Consensus 159 ~~~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~----g~vDa~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 231 (269)
T 4i62_A 159 SIQETMAKDLL--QNSSLVSLPKNGNLITDLKS----GQVDAVIFEEPVAKGFVEN-NPDLAIADLNFEKEQDDSYAVAM 231 (269)
T ss_dssp SHHHHHHHHHC--TTSEEEEESCHHHHHHHHHT----TSSSEEEEEHHHHHHHHHH-CTTEEECSCCCCC-CCCEECCEE
T ss_pred chHHHHHHHhC--CCCcEEecCCHHHHHHHHHc----CCCCEEEeChHHHHHHHHh-CCCCeEEeeccCCCcccceEEEE
Confidence 99888886533 34677889999999999999 9999999999999988887 566666654433 56789999
Q ss_pred cCCCc-chHHHHHHHHhccccccHHHHHHHhcC
Q 002267 798 QRDSP-LAIDLSTAILQLSENGDLQKIHNKWLT 829 (945)
Q Consensus 798 ~k~sp-l~~~i~~~i~~l~e~G~~~~i~~~w~~ 829 (945)
+|++| +.+.+|++|.++.++|.+++|.++|+.
T Consensus 232 ~~~~~~l~~~l~~~l~~l~~~g~~~~i~~k~~~ 264 (269)
T 4i62_A 232 KKDSKELKEAVDKTIQKLKESGELDKLIEDAFK 264 (269)
T ss_dssp ESSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred eCCCHHHHHHHHHHHHHHHhCChHHHHHHHHhC
Confidence 99998 999999999999999999999999997
No 71
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=99.78 E-value=9.6e-19 Score=187.94 Aligned_cols=217 Identities=22% Similarity=0.281 Sum_probs=188.8
Q ss_pred CceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhC---CCCccEEEEEcCCCCCCCCHHHHHHHHHcCcccEEE
Q 002267 485 MPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLL---PYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAV 561 (945)
Q Consensus 485 ~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~l~~~l---~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~ 561 (945)
++||||+. +.|+||.+.+. ++.+.|+++|+++.+++++ |++ +++++ ..|.+++..|.+|++|+++
T Consensus 55 ~~l~vg~~--~~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~~~~g~~--v~~~~-------~~~~~~~~~l~~G~~D~~~ 122 (291)
T 2yjp_A 55 GVIRIGVF--GDKPPFGYVDA-NGKNQGFDVEIAKDLAKDLLGSPDK--VEFVL-------TEAANRVEYVRSGKVDLIL 122 (291)
T ss_dssp TCEEEEEC--SEETTTEEECT-TSCEESHHHHHHHHHHHHHHSCGGG--EEEEE-------CCGGGHHHHHHTTSCSEEC
T ss_pred CeEEEEEc--CCCCCceEECC-CCCEeehHHHHHHHHHHHhccCCce--EEEEE-------ccHHHHHHHHhCCCeeEEE
Confidence 57999994 55889988764 6889999999999999999 977 55554 3489999999999999999
Q ss_pred ecEEEecCcceeEEecccccccceEEEEEccCCCCCceeeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCCcc
Q 002267 562 GDITIVTNRTKLVDFTQPYMESGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEFRGPPSQ 641 (945)
Q Consensus 562 ~~~~~t~~r~~~~dfs~p~~~~~~~~vv~~~~~~~~~~~fl~PF~~~~W~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 641 (945)
+.+..+.+|.+.++|+.||.....++++++..
T Consensus 123 ~~~~~~~~r~~~~~~~~p~~~~~~~l~~~~~~------------------------------------------------ 154 (291)
T 2yjp_A 123 ANFTQTPERAEAVDFADPYMKVALGVVSPKNK------------------------------------------------ 154 (291)
T ss_dssp SSCBCCHHHHTTEEECCCCEEECEEEEEETTS------------------------------------------------
T ss_pred eCCCCChHHHccceeccCeeecceEEEEeCCC------------------------------------------------
Confidence 88888999999999999999999999998765
Q ss_pred chhhHHHHHHHHhhccccCcccccchhhHHHHHHHHHHhhhhhhhhhhheeeeeccccCCCCChHHhhcCCCCeEEeeCc
Q 002267 642 QLVTIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISSTEPIGVQDGS 721 (945)
Q Consensus 642 ~~~~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~~~~dL~~~~~~v~~~~~s 721 (945)
.|++++||. |++||+..|+
T Consensus 155 -----------------------------------------------------------~i~sl~dL~--gk~v~~~~g~ 173 (291)
T 2yjp_A 155 -----------------------------------------------------------PITDMAQLK--DQTLLVNKGT 173 (291)
T ss_dssp -----------------------------------------------------------CCCSGGGGT--TSEEEEETTS
T ss_pred -----------------------------------------------------------CCCCHHHhC--CCEEEEecCC
Confidence 688999996 8999999999
Q ss_pred hHHHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceeEEecchhhHHHHhccCCccEEEeCccccccce-EEEecCC
Q 002267 722 FAWNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVGQEFTKSGW-GFAFQRD 800 (945)
Q Consensus 722 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~k~ 800 (945)
....++.... +..+++.+.+.++++++|.+ |++|+++.+.+.+.+++.+ ..++.++...+...++ +++++|+
T Consensus 174 ~~~~~l~~~~--~~~~~~~~~~~~~~~~~l~~----G~vDa~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~k~ 246 (291)
T 2yjp_A 174 TADAFFTKSH--PEVKLLKFDQNTETFDALKD----GRGVALAHDNALLWAWAKE-NPNFEVAIGNLGPAEFIAPAVQKG 246 (291)
T ss_dssp HHHHHHHHHC--TTSEEEEESSHHHHHHHHHT----TSSSEEEEEHHHHHHHHHH-CTTEEEEECCSSSCEEECCEEETT
T ss_pred cHHHHHHHhC--CCceEEEeCCHHHHHHHHHc----CCccEEEecHHHHHHHHHh-CCCeEEcCCcccCCcceEEEEeCC
Confidence 8888886543 34567788999999999999 9999999999999988877 5568887777777777 9999999
Q ss_pred Cc-chHHHHHHHHhccccccHHHHHHHhcC
Q 002267 801 SP-LAIDLSTAILQLSENGDLQKIHNKWLT 829 (945)
Q Consensus 801 sp-l~~~i~~~i~~l~e~G~~~~i~~~w~~ 829 (945)
+| +.+.||++|.++.++|.+++|.++|+.
T Consensus 247 ~~~l~~~l~~al~~l~~~g~~~~i~~k~~~ 276 (291)
T 2yjp_A 247 NADLLNWVNGEIAAMKKDGRLKAAYEKTLL 276 (291)
T ss_dssp CHHHHHHHHHHHHHHHHHSHHHHHHHHHTH
T ss_pred CHHHHHHHHHHHHHHHhCChHHHHHHHhcc
Confidence 88 999999999999999999999999987
No 72
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=99.78 E-value=9e-19 Score=187.28 Aligned_cols=218 Identities=18% Similarity=0.250 Sum_probs=187.8
Q ss_pred CCceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHHHHHHHHHcCcccEEEec
Q 002267 484 GMPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGD 563 (945)
Q Consensus 484 g~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~ 563 (945)
.++|+|++ .+.|+||.+.+. ++.+.|+.+|+++.+++++|++ ++++. ..|.+++.+|.+|++|++++.
T Consensus 56 ~~~l~v~~--~~~~~P~~~~~~-~g~~~G~~~dl~~~i~~~~G~~--v~~~~-------~~~~~~~~~l~~G~~D~~~~~ 123 (283)
T 2yln_A 56 KGTVTVGT--EGTYAPFTYHDK-DGKLTGYDVEVTRAVAEKLGVK--VEFKE-------TQWDSMMAGLKAGRFDVVANQ 123 (283)
T ss_dssp TCEEEEEE--CSEETTTEEECT-TSCEESHHHHHHHHHHHHHTCE--EEEEE-------CCGGGHHHHHHHTSCSEECSS
T ss_pred CCeEEEEE--CCCCCCeeEECC-CCCEeeehHHHHHHHHHHcCCc--eEEEE-------CCHHHHHHHHHCCCcCEEEec
Confidence 36799999 445889988764 6789999999999999999977 55554 239999999999999999988
Q ss_pred EEE-ecCcceeEEecccccccceEEEEEccCCCCCceeeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCCccc
Q 002267 564 ITI-VTNRTKLVDFTQPYMESGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEFRGPPSQQ 642 (945)
Q Consensus 564 ~~~-t~~r~~~~dfs~p~~~~~~~~vv~~~~~~~~~~~fl~PF~~~~W~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 642 (945)
+.. +.+|.+.++|+.||+.....+++++..
T Consensus 124 ~~~~t~~r~~~~~~~~p~~~~~~~l~~~~~~------------------------------------------------- 154 (283)
T 2yln_A 124 VGLTSPERQATFDKSEPYSWSGAVLVAHNDS------------------------------------------------- 154 (283)
T ss_dssp CCCCSHHHHHHEEECSCSEEECEEEEEETTC-------------------------------------------------
T ss_pred CccCChhhhcceEeccCeeeecEEEEEECCC-------------------------------------------------
Confidence 887 899999999999999999999998765
Q ss_pred hhhHHHHHHHHhhccccCcccccchhhHHHHHHHHHHhhhhhhhhhhheeeeeccccCCCCChHHhhcCCCCeEEeeCch
Q 002267 643 LVTIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISSTEPIGVQDGSF 722 (945)
Q Consensus 643 ~~~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~~~~dL~~~~~~v~~~~~s~ 722 (945)
+|++++||. |++|++..|+.
T Consensus 155 ----------------------------------------------------------~i~s~~dL~--G~~v~v~~g~~ 174 (283)
T 2yln_A 155 ----------------------------------------------------------NIKSIADIK--GVKTAQSLTSN 174 (283)
T ss_dssp ----------------------------------------------------------SCCSGGGCT--TSEEEECTTSH
T ss_pred ----------------------------------------------------------CCCCHHHhC--CCEEEEecCch
Confidence 488999995 89999999998
Q ss_pred HHHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceeEEecchhhHHHHhccCCc-cEEEeC-cccc-ccceEEEecC
Q 002267 723 AWNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTNC-EFRTVG-QEFT-KSGWGFAFQR 799 (945)
Q Consensus 723 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~-~~~~~~-~~~~-~~~~~~~~~k 799 (945)
...++.+. + .+++.+.+..+++++|.+ |++|+++.+.+.+.+++.+... ++.++. ..+. ..+++++++|
T Consensus 175 ~~~~l~~~-~---~~~~~~~~~~~~~~~l~~----g~vDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~k 246 (283)
T 2yln_A 175 YGEKAKAA-G---AQLVPVDGLAQSLTLIEQ----KRADATLNDELAVLDYLKKNPNAGVKIVWSAPADEKVGSGLIVNK 246 (283)
T ss_dssp HHHHHHHT-T---CEEEECSSHHHHHHHHHT----TSCCEEEEEHHHHHHHHHHSTTSSEEEEEECCGGGCEEECCEEES
T ss_pred HHHHHHHc-C---CeEEEeCCHHHHHHHHHc----CCCCEEEecHHHHHHHHHhCCCCcEEEccCcccCCcccEEEEEeC
Confidence 88888642 2 457788899999999999 9999999999999888776333 488887 6666 6788999999
Q ss_pred CCc-chHHHHHHHHhccccccHHHHHHHhcCC
Q 002267 800 DSP-LAIDLSTAILQLSENGDLQKIHNKWLTY 830 (945)
Q Consensus 800 ~sp-l~~~i~~~i~~l~e~G~~~~i~~~w~~~ 830 (945)
++| +.+.||++|.++.++|.+++|.+||+..
T Consensus 247 ~~~~l~~~i~~al~~l~~~g~~~~i~~k~~~~ 278 (283)
T 2yln_A 247 GNDEAVAKFSTAINELKADGTLKKLGEQFFGK 278 (283)
T ss_dssp SCHHHHHHHHHHHHHHHHTTHHHHHHHHHHSS
T ss_pred CCHHHHHHHHHHHHHHHHCCcHHHHHHHHcCC
Confidence 987 9999999999999999999999999973
No 73
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=99.69 E-value=1.1e-16 Score=168.41 Aligned_cols=215 Identities=15% Similarity=0.265 Sum_probs=179.0
Q ss_pred CCceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhC---CCCccEEEEEcCCCCCCCCHHHHHHHHHcCcccEE
Q 002267 484 GMPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLL---PYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAA 560 (945)
Q Consensus 484 g~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~l~~~l---~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~ 560 (945)
.++||||+. +.++||.+.+..++.+.|+++|+++.+++++ |++ +++.. ..|.+++..+.+|++|++
T Consensus 37 ~~~l~vg~~--~~~~p~~~~~~~~g~~~G~~~~l~~~~~~~~~~pg~~--v~~~~-------~~~~~~~~~l~~g~~D~~ 105 (259)
T 2v25_A 37 KGQLIVGVK--NDVPHYALLDQATGEIKGFEVDVAKLLAKSILGDDKK--IKLVA-------VNAKTRGPLLDNGSVDAV 105 (259)
T ss_dssp HTCEEEEEC--SEETTTEEEETTTTEEESHHHHHHHHHHHHHHSCTTS--EEEEE-------CCTTTHHHHHHTTSCSEE
T ss_pred CCeEEEEEC--CCCCCeEEEECCCCeEEEeeHHHHHHHHHHhcCCCcc--eEEEE-------cCHHHHHHHHhCCCCCEE
Confidence 357999994 5578888776336789999999999999999 877 55554 348899999999999999
Q ss_pred EecEEEecCcceeEEecccccccceEEEEEccCCCCCceeeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCCc
Q 002267 561 VGDITIVTNRTKLVDFTQPYMESGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEFRGPPS 640 (945)
Q Consensus 561 ~~~~~~t~~r~~~~dfs~p~~~~~~~~vv~~~~~~~~~~~fl~PF~~~~W~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 640 (945)
++++..+.+|.+.++|+.||.....++++++..
T Consensus 106 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~----------------------------------------------- 138 (259)
T 2v25_A 106 IATFTITPERKRIYNFSEPYYQDAIGLLVLKEK----------------------------------------------- 138 (259)
T ss_dssp CSSCBCCHHHHTTEEECSCSEEEEEEEEEEGGG-----------------------------------------------
T ss_pred EecCccCHHHHhcCcccccceeCceEEEEeCCC-----------------------------------------------
Confidence 887888889999999999999999999998764
Q ss_pred cchhhHHHHHHHHhhccccCcccccchhhHHHHHHHHHHhhhhhhhhhhheeeeeccccCCCCChHHhhcCCCCeEEeeC
Q 002267 641 QQLVTIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISSTEPIGVQDG 720 (945)
Q Consensus 641 ~~~~~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~~~~dL~~~~~~v~~~~~ 720 (945)
++++++||. +++|++..|
T Consensus 139 ------------------------------------------------------------~i~~~~dL~--g~~i~~~~g 156 (259)
T 2v25_A 139 ------------------------------------------------------------KYKSLADMK--GANIGVAQA 156 (259)
T ss_dssp ------------------------------------------------------------CCCSGGGCT--TCEEEEETT
T ss_pred ------------------------------------------------------------CCCCHHHhC--CCEEEEecC
Confidence 577899997 888999999
Q ss_pred chHHHHHHHhh---ccccccceecCCHHHHHHHHhcCCCCCceeEEecchhhHHHHhccCCccEEEeCccccccceEEEe
Q 002267 721 SFAWNYLVDEL---KIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVGQEFTKSGWGFAF 797 (945)
Q Consensus 721 s~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (945)
+....++.... ++. .+++.+.+.++.+++|.. |++|+++.+.+...+++++ +.+ +++..+...++++++
T Consensus 157 ~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~l~~----g~vDa~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~ 228 (259)
T 2v25_A 157 ATTKKAIGEAAKKIGID-VKFSEFPDYPSIKAALDA----KRVDAFSVDKSILLGYVDD-KSE--ILPDSFEPQSYGIVT 228 (259)
T ss_dssp CSHHHHHHHHHHHTTCC-CEEEEESSHHHHHHHHHT----TSSSEEEEEHHHHTTTCCT-TEE--ECSCCCSEEEECCEE
T ss_pred CchHHHHHHHHHhcCCc-eeEEEeCCHHHHHHHHHc----CCCcEEEecHHHHHHHHHh-CCC--ccccccccceeEEEE
Confidence 87777665432 221 256778999999999999 9999999999988887776 444 556666667889999
Q ss_pred cCCCc-chHHHHHHHHhccccccHHHHHHHhc
Q 002267 798 QRDSP-LAIDLSTAILQLSENGDLQKIHNKWL 828 (945)
Q Consensus 798 ~k~sp-l~~~i~~~i~~l~e~G~~~~i~~~w~ 828 (945)
+|++| +.+.+|++|.++.++ ++++.+||.
T Consensus 229 ~k~~~~l~~~~~~~l~~~~~~--~~~i~~k~~ 258 (259)
T 2v25_A 229 KKDDPAFAKYVDDFVKEHKNE--IDALAKKWG 258 (259)
T ss_dssp ETTCHHHHHHHHHHHHHTHHH--HHHHHHHTT
T ss_pred cCCCHHHHHHHHHHHHHHHHH--HHHHHHHhC
Confidence 99986 999999999999999 899999984
No 74
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=98.76 E-value=2.7e-08 Score=106.62 Aligned_cols=214 Identities=13% Similarity=0.121 Sum_probs=143.0
Q ss_pred CceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHHHHHHHHHcCcccEEEec-
Q 002267 485 MPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGD- 563 (945)
Q Consensus 485 ~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~- 563 (945)
++|+||+ .+.+.|+...+ ...++.+.+++++|.+ ++++.. .+|++++..|..|++|+++.+
T Consensus 4 ~~l~iG~--~p~~~p~~~~~--------~~~~l~~~l~k~lG~~--ve~~~~------~~~~~~i~al~~G~vDi~~~~~ 65 (310)
T 3n5l_A 4 PVINFGI--ISTESSQNLKS--------IWEPFLKDMSQQTGYQ--VKAFFA------PDYAGIIQGMRFDKVDIAWYGN 65 (310)
T ss_dssp CEEEEEE--CCSSCHHHHHH--------HHHHHHHHHHHHHSSE--EEEECC------SSHHHHHHHHHTTSCSEEECCH
T ss_pred cEEEEEE--ecCCCHHHHHH--------HHHHHHHHHHHHhCCC--EEEEeC------CCHHHHHHHHHcCCCCEEEECc
Confidence 6799999 45566665433 1248999999999977 555432 579999999999999999643
Q ss_pred EEEec--CcceeEEecccccc-----cceEEEEEccCCCCCceeeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCC
Q 002267 564 ITIVT--NRTKLVDFTQPYME-----SGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEFR 636 (945)
Q Consensus 564 ~~~t~--~r~~~~dfs~p~~~-----~~~~~vv~~~~~~~~~~~fl~PF~~~~W~~~~~~~~~~~~~~~~l~~~~~~~~~ 636 (945)
..... +|.....|..++.. ...+++|++.
T Consensus 66 ~~~~~~~~~~~~~~~a~~~~~~g~~~~~~~lvv~~d-------------------------------------------- 101 (310)
T 3n5l_A 66 KAAMEAVDRAHGEIFAQTVAASGAPGYWSLLIANKD-------------------------------------------- 101 (310)
T ss_dssp HHHHHHHHHSCEEEEEEEEETTCCSEEEEEEEEETT--------------------------------------------
T ss_pred HHHHHHHHhcCCeEEEEEeccCCCcceEEEEEEECC--------------------------------------------
Confidence 33332 23333444433210 1134555543
Q ss_pred CCCccchhhHHHHHHHHhhccccCcccccchhhHHHHHHHHHHhhhhhhhhhhheeeeeccccCCCCChHHhhc--CCCC
Q 002267 637 GPPSQQLVTIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLIS--STEP 714 (945)
Q Consensus 637 ~~~~~~~~~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~~~~dL~~--~~~~ 714 (945)
.+|++++||++ .|++
T Consensus 102 ---------------------------------------------------------------s~i~sl~DL~~~~kgk~ 118 (310)
T 3n5l_A 102 ---------------------------------------------------------------SKIDSLEDMLANAKSLT 118 (310)
T ss_dssp ---------------------------------------------------------------CSCCSHHHHHHTGGGCE
T ss_pred ---------------------------------------------------------------CCCCCHHHHhhhcCCCE
Confidence 37999999932 2677
Q ss_pred eEEe-eCchH----HHH-HHHhhcccc---ccceecCCHHHHHHHHhcCCCCCceeEEecchhhHHHHhccCC---ccEE
Q 002267 715 IGVQ-DGSFA----WNY-LVDELKIAE---SRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTN---CEFR 782 (945)
Q Consensus 715 v~~~-~~s~~----~~~-l~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~---~~~~ 782 (945)
|++. .|+.. ..+ +....++.. .+.+...+..+.+.+|.. |++|+.+.+.+....+.++.. .+++
T Consensus 119 ia~~~~gs~~~~l~~~~~l~~~~Gi~~~~~~~~v~~g~~~~~~~al~~----G~vDa~~~~~~~~~~~~~~~~~~~~~lr 194 (310)
T 3n5l_A 119 FGNGDPNSTSGYLVPGYYVFAKNNVDPVKAFKRTLNSSHEVNALAVAN----KQVDVATFNTEGMERLELTQPEKARQLK 194 (310)
T ss_dssp EEECCTTCTTTTHHHHHHTTTTTTCCHHHHSSEEEECCHHHHHHHHHT----TSSSEEEEEHHHHHHHHHHCHHHHTTEE
T ss_pred EEecCCCccHhHHHHHHHHHHHcCCChHHhccccccCCHHHHHHHHHc----CCccEEEecchhHHHHHHhCccchhCEE
Confidence 8863 34422 221 212334332 123344677789999999 999999999888888776621 2566
Q ss_pred EeCccccccceEEEecCCCc--chHHHHHHHHhccccccHHHHHHHh
Q 002267 783 TVGQEFTKSGWGFAFQRDSP--LAIDLSTAILQLSENGDLQKIHNKW 827 (945)
Q Consensus 783 ~~~~~~~~~~~~~~~~k~sp--l~~~i~~~i~~l~e~G~~~~i~~~w 827 (945)
++........++++++++.| +++.++++|.++.++|..+++.++|
T Consensus 195 vl~~s~~~p~~~i~~~~~~~~~l~~~l~~al~~~~~d~~~~~~l~~~ 241 (310)
T 3n5l_A 195 VIWKSPLIPGDPLVWRNNLSDEQKNKLRDFFFKYGANAEQKKVLADL 241 (310)
T ss_dssp EEEEEEEEECCEEEEETTSCHHHHHHHHHHHHHCCCSHHHHHHHHHT
T ss_pred EEEECCCCCCCcEEEECCCCHHHHHHHHHHHHhcCCChhHHHHHHhc
Confidence 66544334467899999954 9999999999999999988877776
No 75
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=98.71 E-value=7.2e-08 Score=103.59 Aligned_cols=216 Identities=14% Similarity=0.150 Sum_probs=141.6
Q ss_pred CCCceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHHHHHHHHHcCcccEEEe
Q 002267 483 NGMPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVG 562 (945)
Q Consensus 483 ~g~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~ 562 (945)
+.++|+||+. |.+.|..... ..-++++.|++++|.+ +++... .+|++++..|..|++|+++.
T Consensus 12 ~~~~l~~Gv~--p~~~~~~~~~--------~~~~l~~~L~k~lG~~--ve~~~~------~~~~~~i~aL~~G~vDia~~ 73 (321)
T 3p7i_A 12 QEKALNFGII--STESQQNLKP--------QWTPFLQDMEKKLGVK--VNAFFA------PDYAGIIQGMRFNKVDIAWY 73 (321)
T ss_dssp --CCEEEEEC--CSSCHHHHHH--------HHHHHHHHHHHHHTSC--EEEECC------SSHHHHHHHHHTTSCSEEEC
T ss_pred cCCcEEEEEe--cCCCHHHHHH--------HHHHHHHHHHHHHCCC--EEEEec------CCHHHHHHHHHcCCCcEEEE
Confidence 4578999994 3344443322 2347999999999977 555432 67999999999999999964
Q ss_pred -cEEEecC--cceeEEeccccc-----ccceEEEEEccCCCCCceeeeccCchhhHHHHHHHHHHHHhhhheeecccCCC
Q 002267 563 -DITIVTN--RTKLVDFTQPYM-----ESGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNE 634 (945)
Q Consensus 563 -~~~~t~~--r~~~~dfs~p~~-----~~~~~~vv~~~~~~~~~~~fl~PF~~~~W~~~~~~~~~~~~~~~~l~~~~~~~ 634 (945)
+.+.+.. |.....|..|+. ....+++|++.
T Consensus 74 ~~~~~~~~~~~~~~~~~a~~~~~~g~~~y~~~lvv~~d------------------------------------------ 111 (321)
T 3p7i_A 74 GNLSAMEAVDRANGQVFAQTVAADGSPGYWSVLIVNKD------------------------------------------ 111 (321)
T ss_dssp CHHHHHHHHHHSCEEEEEEEEETTCCSSBCEEEEEETT------------------------------------------
T ss_pred ChHHHHHHHHhcCCEEEEEEeccCCCcceEEEEEEECC------------------------------------------
Confidence 3444432 333334443321 01134555543
Q ss_pred CCCCCccchhhHHHHHHHHhhccccCcccccchhhHHHHHHHHHHhhhhhhhhhhheeeeeccccCCCCChHHhhc--CC
Q 002267 635 FRGPPSQQLVTIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLIS--ST 712 (945)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~~~~dL~~--~~ 712 (945)
.+|++++||++ .+
T Consensus 112 -----------------------------------------------------------------s~i~sl~DL~~~~kg 126 (321)
T 3p7i_A 112 -----------------------------------------------------------------SPINNLNDLLAKRKD 126 (321)
T ss_dssp -----------------------------------------------------------------CSCCSHHHHHHTGGG
T ss_pred -----------------------------------------------------------------CCCCCHHHHHhhcCC
Confidence 37999999932 26
Q ss_pred CCeEEe-eCchH----HHH-HHHhhcccccc--ceecCCHHHHHHHHhcCCCCCceeEEecchhhHHHHhccCC---ccE
Q 002267 713 EPIGVQ-DGSFA----WNY-LVDELKIAESR--LVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTN---CEF 781 (945)
Q Consensus 713 ~~v~~~-~~s~~----~~~-l~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~---~~~ 781 (945)
.++++. .|+.. ... +....++.... .+.+.+..+.+.+|.. |++|+.+.+.+.+..+.++.. .++
T Consensus 127 k~va~~~~gsts~~l~~~~~l~~~~Gi~~~~~~~v~~~~~~~a~~al~~----G~vDa~~~~~~~~~~~~~~~p~~~~~l 202 (321)
T 3p7i_A 127 LTFGNGDPNSTSGFLVPGYYVFAKNNISASDFKRTVNAGHETNALAVAN----KQVDVATNNTENLDKLKTSAPEKLKEL 202 (321)
T ss_dssp CEEEECCTTCTTTTHHHHHHTTGGGTCCGGGSSEEEECCHHHHHHHHHT----TSSSEEEEEHHHHHTHHHHCHHHHTTE
T ss_pred CEEEeCCCCccHHHHHHHHHHHHHcCCChhHceeeecCCHHHHHHHHHC----CCceEEEechHHHHHHHHhCcchhccE
Confidence 678763 34322 222 22233443222 2345678889999999 999999999888877776521 257
Q ss_pred EEeCccccccceEEEecCCCc--chHHHHHHHHhccccccHHHHHHHh
Q 002267 782 RTVGQEFTKSGWGFAFQRDSP--LAIDLSTAILQLSENGDLQKIHNKW 827 (945)
Q Consensus 782 ~~~~~~~~~~~~~~~~~k~sp--l~~~i~~~i~~l~e~G~~~~i~~~w 827 (945)
+++........++++++++-| +++.++.+|.++.++|...++.+++
T Consensus 203 rvl~~s~~~p~~~i~~~k~~~~~l~~~l~~aL~~~~~d~~~~~~l~~~ 250 (321)
T 3p7i_A 203 KVIWKSPLIPGDPIVWRKNLSETTKDKIYDFFMNYGKTPEEKAVLERL 250 (321)
T ss_dssp EEEEECSCBCCCEEEEETTSCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred EEEEEcCCCCCCceeeeCCCCHHHHHHHHHHHHhcCCCHHHHHHHHhc
Confidence 777644444567899999854 9999999999999999888777665
No 76
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=98.54 E-value=5e-07 Score=89.98 Aligned_cols=181 Identities=10% Similarity=0.041 Sum_probs=131.2
Q ss_pred CceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCC-CHHHHHHHHHcCcccEEEecEEEecC------cceeEEecccc
Q 002267 508 PGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNP-IYNDIVQQVALNKFDAAVGDITIVTN------RTKLVDFTQPY 580 (945)
Q Consensus 508 ~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~~~-~~~~~i~~l~~g~~D~~~~~~~~t~~------r~~~~dfs~p~ 580 (945)
.++.|+.--|.+.+. |++ +++.. . .+++.+..|.+|++|+++.++..+++ |...+||+.||
T Consensus 28 ~~yeGlatgl~~~f~---gi~--~~i~~-------mrg~~~RI~aL~~gk~D~aI~S~~aa~e~~~~~~r~~~vdFg~~y 95 (231)
T 2ozz_A 28 RLYEGLASGLKAQFD---GIP--FYYAH-------MRGADIRVECLLNGVYDMAVVSRLAAESYLSQNNLCIALELGPHT 95 (231)
T ss_dssp HHHHHHHHHHHHTTT---TSC--EEEEE-------CSCHHHHHHHHHTTSCSEEEEEHHHHHHHHHHSCEEEEEECCTTS
T ss_pred hhhhHHHHHHHHHhc---CCc--EEEEE-------ccChHHHHHHHHcCCCCEEEEecccchhhhcccCeEEEEEcCCCc
Confidence 466788777777773 655 55554 4 69999999999999999999999998 99999999999
Q ss_pred cccceEEEEEccCCCCCceeeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCCccchhhHHHHHHHHhhccccC
Q 002267 581 MESGLVVVAPVQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEFRGPPSQQLVTIFWFSFSTMFFSHRE 660 (945)
Q Consensus 581 ~~~~~~~vv~~~~~~~~~~~fl~PF~~~~W~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 660 (945)
+.+.-.+++.++..
T Consensus 96 Yv~~h~li~~~~~~------------------------------------------------------------------ 109 (231)
T 2ozz_A 96 YVGEHQLICRKGES------------------------------------------------------------------ 109 (231)
T ss_dssp SSCCEEEEEETTCG------------------------------------------------------------------
T ss_pred cccCeEEEEeCCCc------------------------------------------------------------------
Confidence 98888888876640
Q ss_pred cccccchhhHHHHHHHHHHhhhhhhhhhhheeeeeccccCCCCChHHhhcCCCCeEEeeCchHHHHHHHhhcccccccee
Q 002267 661 NTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISSTEPIGVQDGSFAWNYLVDELKIAESRLVK 740 (945)
Q Consensus 661 ~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~~~~dL~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~ 740 (945)
..| ++||+..||.-+..+.+..- ....+..
T Consensus 110 ---------------------------------------~~i----------krVGvd~gS~dq~~lt~~~~-~g~~Ve~ 139 (231)
T 2ozz_A 110 ---------------------------------------GNV----------KRVGLDSRSADQKIMTDVFF-GDSDVER 139 (231)
T ss_dssp ---------------------------------------GGC----------CEEEECTTCHHHHHHHHHHH-TTSCCEE
T ss_pred ---------------------------------------ccc----------EEEEecCCChhHHHHHhhhc-CCCeEEE
Confidence 011 57999999988888876432 4445556
Q ss_pred c-CCHHHHHHHHhcCCCCCceeEEec--chhhHHHHhccCCccEE--EeCc---cccccceEEEecCCCc-chHHHHHHH
Q 002267 741 L-KNMEEYSIALARGPKGGGVAAIVD--ELPYIELFMSKTNCEFR--TVGQ---EFTKSGWGFAFQRDSP-LAIDLSTAI 811 (945)
Q Consensus 741 ~-~~~~~~~~~l~~~~~~g~~~a~~~--~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~k~sp-l~~~i~~~i 811 (945)
+ .+..+++.+|.+ |++||++. +.+... + +.++. .+.. ........++++||.+ +++.+|+.|
T Consensus 140 ve~~y~~~i~~L~~----G~IDA~Iwn~d~~~a~----~-~~~l~~~~l~~~~~~~~~~eavI~v~k~n~~L~~~ln~~I 210 (231)
T 2ozz_A 140 VDLSYHESLQRIVK----GDVDAVIWNVVAENEL----T-MLGLEATPLTDDPRFLQATEAVVLTRVDDYPMQQLLRAVV 210 (231)
T ss_dssp EECCHHHHHHHHHH----TSCCEEEEEC-CHHHH----H-HTTEEEEECCSCHHHHHTTCEEEEEETTCHHHHHHHHHHC
T ss_pred EECCHHHHHHHHHc----CCccEEEEcCcchhhh----c-CCCcceeccccccccccCCceEEEEECCCHHHHHHHHHHh
Confidence 7 789999999999 99999999 666554 1 22232 2222 2233455688999975 887777766
Q ss_pred HhccccccHHHHHHHhcC
Q 002267 812 LQLSENGDLQKIHNKWLT 829 (945)
Q Consensus 812 ~~l~e~G~~~~i~~~w~~ 829 (945)
+...+-.++++-+.
T Consensus 211 ----~~~~v~~~Q~~V~~ 224 (231)
T 2ozz_A 211 ----DKHALLAHQQRVVS 224 (231)
T ss_dssp ----CHHHHHHHHHHHHT
T ss_pred ----HHHHHHHHHHHHHc
Confidence 44555566666554
No 77
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=98.42 E-value=1.2e-05 Score=86.40 Aligned_cols=208 Identities=14% Similarity=0.081 Sum_probs=136.7
Q ss_pred EEEEEEeccCCccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-cCChhHHH
Q 002267 51 VRIGALFTYDSVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAIG-PQSSGIAH 129 (945)
Q Consensus 51 i~IG~l~~l~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiG-p~~s~~~~ 129 (945)
++||++.|....+......|++.++++. |+++.+.. .+..++....+...+++.+++.+||. |..+....
T Consensus 2 ~~Ig~i~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~~~-~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~ 72 (313)
T 2h3h_A 2 LTIGVIGKSVHPYWSQVEQGVKAAGKAL--------GVDTKFFV-PQKEDINAQLQMLESFIAEGVNGIAIAPSDPTAVI 72 (313)
T ss_dssp CEEEEECSCSSHHHHHHHHHHHHHHHHH--------TCEEEEEC-CSSSCHHHHHHHHHHHHHTTCSEEEECCSSTTTTH
T ss_pred eEEEEEeCCCcHHHHHHHHHHHHHHHHc--------CCEEEEEC-CCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHH
Confidence 6899999865335556778888887764 56665432 23567777777888888888887774 44443333
Q ss_pred HHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHc--CCeEEEEEEEe--CCcccchHHHHHH
Q 002267 130 VISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYY--GWREVIAIFVD--DDYGRNGISVLGD 205 (945)
Q Consensus 130 ~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~--~w~~v~ii~~d--~~~g~~~~~~l~~ 205 (945)
.....+...++|+|.+....+. .+.+..+..++...+..+++++... |.++|++|..+ ........+.+.+
T Consensus 73 ~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~d~~~~g~~a~~~L~~~~~G~~~I~~i~~~~~~~~~~~R~~gf~~ 147 (313)
T 2h3h_A 73 PTIKKALEMGIPVVTLDTDSPD-----SGRYVYIGTDNYQAGYTAGLIMKELLGGKGKVVIGTGSLTAMNSLQRIQGFKD 147 (313)
T ss_dssp HHHHHHHHTTCCEEEESSCCTT-----SCCSCEEECCHHHHHHHHHHHHHHHHTSCSEEEEEESCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCeEEEeCCCCCC-----cceeEEECcCHHHHHHHHHHHHHHHcCCCCEEEEEECCCCCccHHHHHHHHHH
Confidence 3445566789999987543321 1233445677777788888877666 89999999864 3344556788999
Q ss_pred HHhhcCcEEEEeecCCCCCChHHHHHHHHhhccC--CceEEEEEcChhhHHHHHHHHHhCCCCCCCeEEEEeC
Q 002267 206 ALSKKRAKISYKAPFSPGASRSAINSLLVGANLM--ESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIATD 276 (945)
Q Consensus 206 ~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~--~~~vivl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~ 276 (945)
++++.|+++....... .+..+....++++.+. ++++|+. .+...+..++++++++|. ..+...++.|
T Consensus 148 ~l~~~g~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~G~-p~dv~vvg~d 216 (313)
T 2h3h_A 148 AIKDSEIEIVDILNDE--EDGARAVSLAEAALNAHPDLDAFFG-VYAYNGPAQALVVKNAGK-VGKVKIVCFD 216 (313)
T ss_dssp HHTTSSCEEEEEEECS--SCHHHHHHHHHHHHHHCTTCCEEEE-CSTTHHHHHHHHHHHTTC-TTTSEEEEEC
T ss_pred HhcCCCCEEEEeecCC--CCHHHHHHHHHHHHHHCcCceEEEE-cCCCccHHHHHHHHHcCC-CCCeEEEEeC
Confidence 9999999876533222 3444444555555433 4577665 455678889999999994 3344455444
No 78
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=98.40 E-value=9.4e-06 Score=85.31 Aligned_cols=209 Identities=14% Similarity=0.031 Sum_probs=141.9
Q ss_pred EEEEEEeccC-CccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcC-cEEEEccC-ChhH
Q 002267 51 VRIGALFTYD-SVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENE-VVAAIGPQ-SSGI 127 (945)
Q Consensus 51 i~IG~l~~l~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~-v~aiiGp~-~s~~ 127 (945)
++||++.|-. ..+-.....+++.+.++. |+++.+...|+..++....+....+++++ +.+||-.. .+..
T Consensus 1 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~~~~~~~~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~ 72 (276)
T 3ksm_A 1 PKLLLVLKGDSNAYWRQVYLGAQKAADEA--------GVTLLHRSTKDDGDIAGQIQILSYHLSQAPPDALILAPNSAED 72 (276)
T ss_dssp CEEEEECSCSSSTHHHHHHHHHHHHHHHH--------TCEEEECCCSSTTCHHHHHHHHHHHHHHSCCSEEEECCSSTTT
T ss_pred CeEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCEEEEECCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCHHH
Confidence 5899999854 444456778888777774 67777766667788888888888888888 98887533 3344
Q ss_pred HHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHc----CCeEEEEEEEe--CCcccchHH
Q 002267 128 AHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYY----GWREVIAIFVD--DDYGRNGIS 201 (945)
Q Consensus 128 ~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~----~w~~v~ii~~d--~~~g~~~~~ 201 (945)
.......+...++|+|.+....+. . +.+..+..++...+..+++++... |.++|+++..+ ........+
T Consensus 73 ~~~~~~~~~~~~ipvV~~~~~~~~---~--~~~~~V~~d~~~~g~~~~~~l~~~~~~~G~~~i~~i~~~~~~~~~~~R~~ 147 (276)
T 3ksm_A 73 LTPSVAQYRARNIPVLVVDSDLAG---D--AHQGLVATDNYAAGQLAARALLATLDLSKERNIALLRLRAGNASTDQREQ 147 (276)
T ss_dssp THHHHHHHHHTTCCEEEESSCCSS---S--CSSEEEECCHHHHHHHHHHHHHHHSCTTSCEEEEECBCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCcEEEEecCCCC---C--CcceEEccCHHHHHHHHHHHHHHhcCcCCCceEEEEEcCCCchhHHHHHH
Confidence 445566777889999987543321 1 223445677777888888888776 89999999754 234455678
Q ss_pred HHHHHHhhc-CcEEEEeecCCCCCChHHHHHHHHhhccC--CceEEEEEcChhhHHHHHHHHHhCCCCCCCeEEEEeC
Q 002267 202 VLGDALSKK-RAKISYKAPFSPGASRSAINSLLVGANLM--ESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIATD 276 (945)
Q Consensus 202 ~l~~~l~~~-g~~v~~~~~~~~~~~~~d~~~~l~~l~~~--~~~vivl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~ 276 (945)
.+.+++++. |+++.....- ..+..+....+.++.+. ++++|+ +.+...+..+++++++.|+ .++...++.|
T Consensus 148 gf~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~-p~di~vig~d 221 (276)
T 3ksm_A 148 GFLDVLRKHDKIRIIAAPYA--GDDRGAARSEMLRLLKETPTIDGLF-TPNESTTIGALVAIRQSGM-SKQFGFIGFD 221 (276)
T ss_dssp HHHHHHTTCTTEEEEECCBC--CSSHHHHHHHHHHHHHHCSCCCEEE-CCSHHHHHHHHHHHHHTTC-TTSSEEEEES
T ss_pred HHHHHHHhCCCcEEEEEecC--CCcHHHHHHHHHHHHHhCCCceEEE-ECCchhhhHHHHHHHHcCC-CCCeEEEEeC
Confidence 899999998 8887632222 23444444555555433 456554 3556678889999999998 4444455544
No 79
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=98.32 E-value=2.2e-05 Score=83.12 Aligned_cols=210 Identities=9% Similarity=-0.033 Sum_probs=136.8
Q ss_pred eEEEEEEeccC---CccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCC-h
Q 002267 50 SVRIGALFTYD---SVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAIGPQS-S 125 (945)
Q Consensus 50 ~i~IG~l~~l~---~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~-s 125 (945)
+.+||++.|.. ..+......|++.++++. |+++.+...|+..++....+....++.+++.+||.... .
T Consensus 5 ~~~Ig~v~~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~ 76 (289)
T 3brs_A 5 QYYMICIPKVLDDSSDFWSVLVEGAQMAAKEY--------EIKLEFMAPEKEEDYLVQNELIEEAIKRKPDVILLAAADY 76 (289)
T ss_dssp CCEEEEECSCCCSSSHHHHHHHHHHHHHHHHH--------TCEEEECCCSSTTCHHHHHHHHHHHHHTCCSEEEECCSCT
T ss_pred CcEEEEEeCCCCCCchHHHHHHHHHHHHHHHc--------CCEEEEecCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCCh
Confidence 46799999853 344456677877777765 56776655555678777777778888888888775333 3
Q ss_pred hHHHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHH-cC-CeEEEEEEEeC--CcccchHH
Q 002267 126 GIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEY-YG-WREVIAIFVDD--DYGRNGIS 201 (945)
Q Consensus 126 ~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~-~~-w~~v~ii~~d~--~~g~~~~~ 201 (945)
.........+...++|+|.+....+. .+.+..+.+++...+..+++++.. .| .++|+++..+. .....-.+
T Consensus 77 ~~~~~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~D~~~~g~~~~~~L~~~~G~~~~i~~i~~~~~~~~~~~R~~ 151 (289)
T 3brs_A 77 EKTYDAAKEIKDAGIKLIVIDSGMKQ-----DIADITVATDNIQAGIRIGAVTKNLVRKSGKIGVISFVKNSKTAMDREE 151 (289)
T ss_dssp TTTHHHHTTTGGGTCEEEEESSCCSS-----CCCSEEEECCHHHHHHHHHHHHHHHTSSSCEEEEEESCTTSHHHHHHHH
T ss_pred HHhHHHHHHHHHCCCcEEEECCCCCC-----CcceEEEeeChHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHH
Confidence 22223445566789999987543221 123456677777778888887765 46 99999998542 33455678
Q ss_pred HHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccC--CceEEEEEcChhhHHHHHHHHHhCCCCCCCeEEEEeC
Q 002267 202 VLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLM--ESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIATD 276 (945)
Q Consensus 202 ~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~--~~~vivl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~ 276 (945)
.+.+++++.|..+....... .+..+....+.++.+. .+++|+ +.+...+..+++++++.|+. .+...++.|
T Consensus 152 gf~~~l~~~g~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~G~~-~di~vvg~d 224 (289)
T 3brs_A 152 GLKIGLSDDSNKIEAIYYCD--SNYDKAYDGTVELLTKYPDISVMV-GLNQYSATGAARAIKDMSLE-AKVKLVCID 224 (289)
T ss_dssp HHHHHHGGGGGGEEEEEECT--TCHHHHHHHHHHHHHHCTTEEEEE-ESSHHHHHHHHHHHHHTTCT-TTSEEEEEE
T ss_pred HHHHHHHhCCCcEEeeecCC--CCHHHHHHHHHHHHHhCCCceEEE-ECCCcchHHHHHHHHhcCCC-CCEEEEEEC
Confidence 89999999887644322222 3444444455554433 366655 45666788899999999986 444555544
No 80
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=98.31 E-value=8.5e-06 Score=86.66 Aligned_cols=211 Identities=11% Similarity=-0.012 Sum_probs=134.0
Q ss_pred CceEEEEEEecc---CCccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCC
Q 002267 48 PSSVRIGALFTY---DSVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAIGPQS 124 (945)
Q Consensus 48 ~~~i~IG~l~~l---~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~ 124 (945)
..+.+||+++|. +..+......|++.++++. |+++. +.++..++....+....+++++|.+||....
T Consensus 17 ~~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~ 86 (296)
T 3brq_A 17 KSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEK--------GRQLL--LADGKHSAEEERQAIQYLLDLRCDAIMIYPR 86 (296)
T ss_dssp --CCEEEEEECGGGCC--CHHHHHHHHHHHHHHT--------TCEEE--EECCTTSHHHHHHHHHHHHHTTCSEEEEECS
T ss_pred CCCceEEEEeCCcccCCchHHHHHHHHHHHHHHC--------CCEEE--EEeCCCCHHHHHHHHHHHHhcCCCEEEEecC
Confidence 346789999986 4455566778888777763 55554 4577778877777777888888888876333
Q ss_pred hhHHHHHHHhhcc-cCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEeC--CcccchHH
Q 002267 125 SGIAHVISHVVNE-LNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDD--DYGRNGIS 201 (945)
Q Consensus 125 s~~~~~va~~~~~-~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~--~~g~~~~~ 201 (945)
+.....+ ..+.. .++|+|.+....+ + +.+..+..++...+..+++++...|.++|++|..+. ..+..-.+
T Consensus 87 ~~~~~~~-~~l~~~~~iPvV~~~~~~~---~---~~~~~V~~d~~~~~~~a~~~l~~~G~~~I~~i~~~~~~~~~~~R~~ 159 (296)
T 3brq_A 87 FLSVDEI-DDIIDAHSQPIMVLNRRLR---K---NSSHSVWCDHKQTSFNAVAELINAGHQEIAFLTGSMDSPTSIERLA 159 (296)
T ss_dssp SSCHHHH-HHHHHTCSSCEEEESCCCS---S---SGGGEECCCHHHHHHHHHHHHHHTTCCSEEEECCCTTCHHHHHHHH
T ss_pred CCChHHH-HHHHhcCCCCEEEEccccC---C---CCCCEEEEchHHHHHHHHHHHHHCCCceEEEEcCCCCCccHHHHHH
Confidence 2222223 34455 7999998754322 1 223345566666677788888777999999998653 34455678
Q ss_pred HHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhcc--CCceEEEEEcChhhHHHHHHHHHhCCCCCCC-eEEEEeC
Q 002267 202 VLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANL--MESRVFVVHVNPDTGLTIFSVAKSLGMTAGS-YVWIATD 276 (945)
Q Consensus 202 ~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vivl~~~~~~~~~~~~~a~~~g~~~~~-~~wi~~~ 276 (945)
.+.+++++.|+++.....+....+..+....+.++.+ .++++|+. .+...+..+++++++.|+..++ ...++.|
T Consensus 160 gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di~vvg~d 236 (296)
T 3brq_A 160 GYKDALAQHGIALNEKLIANGKWTPASGAEGVEMLLERGAKFSALVA-SNDDMAIGAMKALHERGVAVPEQVSVIGFD 236 (296)
T ss_dssp HHHHHHHTTTCCCCGGGEECCCSSHHHHHHHHHHHHTC--CCSEEEE-SSHHHHHHHHHHHHHHTCCTTTTCEEEEES
T ss_pred HHHHHHHHcCCCCChhhEEeCCCChhHHHHHHHHHHhCCCCCCEEEE-CChHHHHHHHHHHHHcCCCCCCceEEEeec
Confidence 8999999999765432112212233444455555543 35777664 5666788899999999987543 4444444
No 81
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=98.28 E-value=5.2e-05 Score=80.80 Aligned_cols=210 Identities=6% Similarity=-0.039 Sum_probs=133.6
Q ss_pred ceEEEEEEeccC-CccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEE-ccCChh
Q 002267 49 SSVRIGALFTYD-SVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAI-GPQSSG 126 (945)
Q Consensus 49 ~~i~IG~l~~l~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aii-Gp~~s~ 126 (945)
++.+||++.|.. ..+......|++.++++. |+++.+ +.++..++....+....++.+++.+|| .|..+.
T Consensus 3 ~~~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~--------g~~~~~-~~~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~ 73 (303)
T 3d02_A 3 AEKTVVNISKVDGMPWFNRMGEGVVQAGKEF--------NLNASQ-VGPSSTDAPQQVKIIEDLIARKVDAITIVPNDAN 73 (303)
T ss_dssp -CEEEEEECSCSSCHHHHHHHHHHHHHHHHT--------TEEEEE-ECCSSSCHHHHHHHHHHHHHTTCSEEEECCSCHH
T ss_pred CceEEEEEeccCCChHHHHHHHHHHHHHHHc--------CCEEEE-ECCCCCCHHHHHHHHHHHHHcCCCEEEEecCChH
Confidence 368899999864 455556778888887774 455432 234667888777778888888888865 455544
Q ss_pred HHHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHH-cCCe-EEEEEEEe--CCcccchHHH
Q 002267 127 IAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEY-YGWR-EVIAIFVD--DDYGRNGISV 202 (945)
Q Consensus 127 ~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~-~~w~-~v~ii~~d--~~~g~~~~~~ 202 (945)
........+...++|+|.+.... .. .+.+.....++...+..+++++.. .|.+ +++++..+ ........+.
T Consensus 74 ~~~~~~~~~~~~~ipvV~~~~~~--~~---~~~~~~v~~d~~~~g~~a~~~l~~~~g~~~~i~~i~g~~~~~~~~~R~~g 148 (303)
T 3d02_A 74 VLEPVFKKARDAGIVVLTNESPG--QP---SANWDVEIIDNEKFAAEYVEHMAKRMGGKGGYVIYVGSLTVPQHNLWADL 148 (303)
T ss_dssp HHHHHHHHHHHTTCEEEEESCTT--CT---TCSEEEESSCHHHHHHHHHHHHHHHTTTCEEEEEECSCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCeEEEEecCC--CC---CCceEEEecCHHHHHHHHHHHHHHHhCcCceEEEEecCCCCccHHHHHHH
Confidence 44445566677899999875431 11 134455667777777888887755 7887 99888743 2233455678
Q ss_pred HHHHHhhcC--cEEEEeecCCCCCChHHHHHHHHhhccC--CceEEEEEcChhhHHHHHHHHHhCCCCCCCeEEEEe
Q 002267 203 LGDALSKKR--AKISYKAPFSPGASRSAINSLLVGANLM--ESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIAT 275 (945)
Q Consensus 203 l~~~l~~~g--~~v~~~~~~~~~~~~~d~~~~l~~l~~~--~~~vivl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~ 275 (945)
+.+++++.+ +++... .+....+..+....+.++.+. ++++|+. .+...+..++++++++|+. .+...++.
T Consensus 149 f~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~-~dv~vig~ 222 (303)
T 3d02_A 149 LVKYQKEHYPDMHEVTR-RMPVAESVDDSRRTTLDLMKTYPDLKAVVS-FGSNGPIGAGRAVKEKRAK-NKVAVYGM 222 (303)
T ss_dssp HHHHHHHHCTTEEESSS-CBSCTTCHHHHHHHHHHHHHHCTTEEEEEE-SSTTHHHHHHHHHHHTTCT-TTCEEEEC
T ss_pred HHHHHHhhCCCCEEEEe-ecCCCCCHHHHHHHHHHHHHhCCCCCEEEE-eCCcchhHHHHHHHhcCCC-CCeEEEEe
Confidence 888898765 444322 112123444445556665443 3455544 4556788899999999986 34444443
No 82
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=98.28 E-value=4.4e-05 Score=82.67 Aligned_cols=211 Identities=13% Similarity=0.008 Sum_probs=136.0
Q ss_pred ceEEEEEEecc-CCccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcC--cEEEEccCCh
Q 002267 49 SSVRIGALFTY-DSVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENE--VVAAIGPQSS 125 (945)
Q Consensus 49 ~~i~IG~l~~l-~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~--v~aiiGp~~s 125 (945)
.+.+||++.|. +..+-.....+++.++++. |+++. +.++..++....+....+++++ +.+||....+
T Consensus 4 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~l~--~~~~~~~~~~~~~~i~~l~~~~~~vdgiIi~~~~ 73 (332)
T 2rjo_A 4 GQTTLACSFRSLTNPYYTAFNKGAQSFAKSV--------GLPYV--PLTTEGSSEKGIADIRALLQKTGGNLVLNVDPND 73 (332)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHH--------TCCEE--EEECTTCHHHHHHHHHHHHHHTTTCEEEEECCSS
T ss_pred CccEEEEEecCCCcHHHHHHHHHHHHHHHHc--------CCEEE--EecCCCCHHHHHHHHHHHHHCCCCCCEEEEeCCC
Confidence 35689999984 3444445667777776664 44443 4567777777777777788888 9988764333
Q ss_pred -hHHHHHHHhhcccCccEEecccCCCCCCCCCC--CceEEecCChhHHHHHHHHHHHH--cCCeEEEEEEEeC--Ccccc
Q 002267 126 -GIAHVISHVVNELNVPLLSFGATDPTLTSLQY--PYFLRTTQSDYYQMHAVADLVEY--YGWREVIAIFVDD--DYGRN 198 (945)
Q Consensus 126 -~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~--p~~~r~~p~d~~~~~ai~~~l~~--~~w~~v~ii~~d~--~~g~~ 198 (945)
.........+...++|+|.+....+..+...+ +.+..+..++...+..+++++.. .|.++|++|.... .....
T Consensus 74 ~~~~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~~G~~~I~~i~g~~~~~~~~~ 153 (332)
T 2rjo_A 74 SADARVIVEACSKAGAYVTTIWNKPKDLHPWDYNPNYVAHLSYDGVAYGEETATQLFKSMGGKGGVVALGGIFSNVPAIE 153 (332)
T ss_dssp HHHHHHHHHHHHHHTCEEEEESCCCTTCCGGGGTTTEEEEEECCHHHHHHHHHHHHHHHTTTCEEEEEEECCTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCeEEEECCCCCcccchhcccceeEEEccChHHHHHHHHHHHHHHcCCCCeEEEEECCCCCccHHH
Confidence 32224445566679999987554332111111 34566777777778888887766 6999999998542 33455
Q ss_pred hHHHHHHHHhhc-CcEEEEeecCCCCCChHHHHHHHHhhccC---CceEEEEEcChhhHHHHHHHHHhCCCCCCCeEEE
Q 002267 199 GISVLGDALSKK-RAKISYKAPFSPGASRSAINSLLVGANLM---ESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWI 273 (945)
Q Consensus 199 ~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~d~~~~l~~l~~~---~~~vivl~~~~~~~~~~~~~a~~~g~~~~~~~wi 273 (945)
-.+.+.+++++. |+++.....-. .+..+....+.++.+. ++++|+ +.+...+..+++++++.|+. ++...+
T Consensus 154 R~~Gf~~al~~~pgi~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~~aI~-~~nd~~A~g~~~al~~~G~~-~di~vv 228 (332)
T 2rjo_A 154 RKAGLDAALKKFPGIQLLDFQVAD--WNSQKAFPIMQAWMTRFNSKIKGVW-AANDDMALGAIEALRAEGLA-GQIPVT 228 (332)
T ss_dssp HHHHHHHHHHTCTTEEEEEEEECT--TCHHHHHHHHHHHHHHHGGGEEEEE-ESSHHHHHHHHHHHHHTTCB-TTBCEE
T ss_pred HHHHHHHHHHhCCCcEEEeeccCC--CCHHHHHHHHHHHHHhcCCCeeEEE-ECCCchHHHHHHHHHHcCCC-CCCEEE
Confidence 678899999999 98876432222 3444444555555433 466655 45666788899999999986 333333
No 83
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=98.27 E-value=5.6e-06 Score=87.77 Aligned_cols=209 Identities=9% Similarity=-0.059 Sum_probs=130.0
Q ss_pred CceEEEEEEeccCCccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChhH
Q 002267 48 PSSVRIGALFTYDSVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAIGPQSSGI 127 (945)
Q Consensus 48 ~~~i~IG~l~~l~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~ 127 (945)
....+||++.|.+..+......|++.++++. |+++.+ .++..++....+....+++++|.+||....+..
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 75 (288)
T 2qu7_A 6 GRSNIIAFIVPDQNPFFTEVLTEISHECQKH--------HLHVAV--ASSEENEDKQQDLIETFVSQNVSAIILVPVKSK 75 (288)
T ss_dssp -CEEEEEEEESSCCHHHHHHHHHHHHHHGGG--------TCEEEE--EECTTCHHHHHHHHHHHHHTTEEEEEECCSSSC
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHHHHHHC--------CCEEEE--EeCCCCHHHHHHHHHHHHHcCccEEEEecCCCC
Confidence 3567899999873333345556666555542 566544 566678777777777888889998886443322
Q ss_pred HHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEeC--CcccchHHHHHH
Q 002267 128 AHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDD--DYGRNGISVLGD 205 (945)
Q Consensus 128 ~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~--~~g~~~~~~l~~ 205 (945)
...+..+ .++|+|......+. +.+..+..++...+..+++++...|.++|+++..+. .....-.+.+.+
T Consensus 76 ~~~~~~l---~~iPvV~~~~~~~~------~~~~~V~~d~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~ 146 (288)
T 2qu7_A 76 FQMKREW---LKIPIMTLDRELES------TSLPSITVDNEEAAYIATKRVLESTCKEVGLLLANPNISTTIGRKNGYNK 146 (288)
T ss_dssp CCCCGGG---GGSCEEEESCCCSS------CCCCEEEECHHHHHHHHHHHHHTSSCCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred hHHHHHh---cCCCEEEEecccCC------CCCCEEEECcHHHHHHHHHHHHHcCCCcEEEEecCCCCCCHHHHHHHHHH
Confidence 1122222 78999987543321 223455667777788888888778999999998542 344556788999
Q ss_pred HHhhcCcEEEEeecC--CCCC----ChHHHHHHHHhhccCCceEEEEEcChhhHHHHHHHHHhCCCCCCC-eEEEEeC
Q 002267 206 ALSKKRAKISYKAPF--SPGA----SRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGS-YVWIATD 276 (945)
Q Consensus 206 ~l~~~g~~v~~~~~~--~~~~----~~~d~~~~l~~l~~~~~~vivl~~~~~~~~~~~~~a~~~g~~~~~-~~wi~~~ 276 (945)
++++.|+++.....+ .... +..+-...+.++.+.++++|+. .+...+..++++++++|+..++ ...++.|
T Consensus 147 ~l~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di~vvg~d 223 (288)
T 2qu7_A 147 AISEFDLNVNPSLIHYSDQQLGTNAQIYSGYEATKTLLSKGIKGIVA-TNHLLLLGALQAIKESEKEIKKDVIIVGFD 223 (288)
T ss_dssp HHHHTTCCCCGGGEEECCSSCSHHHHHHHHHHHHHHHHHTTCCEEEE-CSHHHHHHHHHHHHHSSCCBTTTBEEEEES
T ss_pred HHHHcCCCCCcceEEeccCCccccCCHHHHHHHHHHHHhcCCCEEEE-CCcHHHHHHHHHHHHhCCCCCCceEEEEeC
Confidence 999999765321111 1112 2222233444433337888764 4566788899999999987544 3344433
No 84
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=98.26 E-value=3.1e-05 Score=81.93 Aligned_cols=211 Identities=11% Similarity=0.009 Sum_probs=133.1
Q ss_pred ceEEEEEEeccC-CccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChhH
Q 002267 49 SSVRIGALFTYD-SVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAIGPQSSGI 127 (945)
Q Consensus 49 ~~i~IG~l~~l~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~ 127 (945)
...+||++.|.. ..+......+++.++++. |+++.+ .++..++....+....++++++.+||.......
T Consensus 6 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~ 75 (289)
T 1dbq_A 6 HTKSIGLLATSSEAAYFAEIIEAVEKNCFQK--------GYTLIL--GNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYP 75 (289)
T ss_dssp --CEEEEEESCTTSHHHHHHHHHHHHHHHHH--------TCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEEECSCCC
T ss_pred CCCEEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCeEEE--EcCCCChHHHHHHHHHHHhCCCCEEEEEeccCC
Confidence 456899999853 444456778888877764 565554 567778777777777888888888775222211
Q ss_pred HHHHHHhhcc-cCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEe--CCcccchHHHHH
Q 002267 128 AHVISHVVNE-LNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVD--DDYGRNGISVLG 204 (945)
Q Consensus 128 ~~~va~~~~~-~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d--~~~g~~~~~~l~ 204 (945)
. .+.+.+.. .++|+|......+. . ++...+..++...+..+++++...|.++|++|..+ ......-.+.+.
T Consensus 76 ~-~~~~~l~~~~~iPvV~~~~~~~~---~--~~~~~V~~d~~~~~~~~~~~L~~~G~~~i~~i~~~~~~~~~~~R~~g~~ 149 (289)
T 1dbq_A 76 E-PLLAMLEEYRHIPMVVMDWGEAK---A--DFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFM 149 (289)
T ss_dssp H-HHHHHHHHTTTSCEEEEECSSCC---S--SSCEEEEECHHHHHHHHHHHHHHTTCCSEEEECCC------CHHHHHHH
T ss_pred H-HHHHHHHhccCCCEEEEccCCCc---c--CcCCEEEeCcHHHHHHHHHHHHHCCCCeEEEEecCCccccHHHHHHHHH
Confidence 1 22333433 79999987543221 1 22345566777778888888877799999999754 335566788999
Q ss_pred HHHhhcCcEEEEeecCCCCCChHHHHHHHHhhcc--CCceEEEEEcChhhHHHHHHHHHhCCCCCCC-eEEEEeC
Q 002267 205 DALSKKRAKISYKAPFSPGASRSAINSLLVGANL--MESRVFVVHVNPDTGLTIFSVAKSLGMTAGS-YVWIATD 276 (945)
Q Consensus 205 ~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vivl~~~~~~~~~~~~~a~~~g~~~~~-~~wi~~~ 276 (945)
+++++.|+++.....+....+..+....+.++.+ .++++|+. .+...+..+++++++.|+..++ ...++.|
T Consensus 150 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~G~~vP~di~vvg~d 223 (289)
T 1dbq_A 150 KAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFC-GGDIMAMGALCAADEMGLRVPQDVSLIGYD 223 (289)
T ss_dssp HHHHHTTCCCCGGGBCCCCSSHHHHHHHHHHHHTSSSCCSEEEE-SCHHHHHHHHHHHHHTTCCTTTTCEEEEEE
T ss_pred HHHHHCCCCCChHHeEeCCCCHHHHHHHHHHHHhCCCCCCEEEE-CCcHHHHHHHHHHHHcCCCCCCceEEEeeC
Confidence 9999999765322222211233444455555543 35777664 5567788899999999987543 4444443
No 85
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=98.23 E-value=2.3e-05 Score=83.35 Aligned_cols=205 Identities=7% Similarity=-0.055 Sum_probs=139.3
Q ss_pred eEEEEEEeccC-CccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEE-ccCChhH
Q 002267 50 SVRIGALFTYD-SVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAI-GPQSSGI 127 (945)
Q Consensus 50 ~i~IG~l~~l~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aii-Gp~~s~~ 127 (945)
.++||++.|.. ..+-.....+++.++++. |+++.+...++..++..-.+....++.+++.+|| .|.....
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~ 74 (297)
T 3rot_A 3 RDKYYLITHGSQDPYWTSLFQGAKKAAEEL--------KVDLQILAPPGANDVPKQVQFIESALATYPSGIATTIPSDTA 74 (297)
T ss_dssp CCEEEEECSCCCSHHHHHHHHHHHHHHHHH--------TCEEEEECCSSSCCHHHHHHHHHHHHHTCCSEEEECCCCSST
T ss_pred eEEEEEEecCCCCchHHHHHHHHHHHHHHh--------CcEEEEECCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCCHHH
Confidence 47899999875 445556778888888874 5666654433336888878888888888888776 5555554
Q ss_pred HHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHcC--CeEEEEEEEeC--CcccchHHHH
Q 002267 128 AHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYG--WREVIAIFVDD--DYGRNGISVL 203 (945)
Q Consensus 128 ~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~--w~~v~ii~~d~--~~g~~~~~~l 203 (945)
.......+...++|+|.+....+... ..+.+..+..++...+..+++++...| -++++++..+. .....-.+.+
T Consensus 75 ~~~~~~~~~~~giPvV~~~~~~~~~~--~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~g~~~~~~~~~R~~Gf 152 (297)
T 3rot_A 75 FSKSLQRANKLNIPVIAVDTRPKDKT--KNPYLVFLGSDNLLAGKKLGEKALELTPSAKRALVLNPQPGHIGLEKRAYGI 152 (297)
T ss_dssp THHHHHHHHHHTCCEEEESCCCSCTT--TSCCSCEEECCHHHHHHHHHHHHHHHCTTCCEEEEEESCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEEcCCCcccc--ccCcceEEccChHHHHHHHHHHHHHhcCCCceEEEEeCCCCcHHHHHHHHHH
Confidence 45556677778999998765443211 123445566778888888888887777 89999997542 2334557889
Q ss_pred HHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccC--CceEEEEEcChhhHHHHHHHHHhCCCCCC
Q 002267 204 GDALSKKRAKISYKAPFSPGASRSAINSLLVGANLM--ESRVFVVHVNPDTGLTIFSVAKSLGMTAG 268 (945)
Q Consensus 204 ~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~--~~~vivl~~~~~~~~~~~~~a~~~g~~~~ 268 (945)
++++++.|+++.... .. .........+.++.+. ++++|+ +.+...+..++++++++|+..+
T Consensus 153 ~~~l~~~g~~~~~~~-~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP 215 (297)
T 3rot_A 153 KTILQDKGIFFEELD-VG--TDPNQVQSRVKSYFKIHPETNIIF-CLTSQALDPLGQMLLHPDRYDF 215 (297)
T ss_dssp HHHHHHTTCEEEEEE-CC--SCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHSHHHHTC
T ss_pred HHHHHhcCCeEEEee-cC--CChHHHHHHHHHHHHhCCCCCEEE-EcCCcchHHHHHHHHhcCCccC
Confidence 999999999987654 22 2344444555554332 456654 4567778888999998887543
No 86
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=98.22 E-value=3.4e-05 Score=82.33 Aligned_cols=188 Identities=11% Similarity=0.133 Sum_probs=123.8
Q ss_pred CceEEEEEEeccCCccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChhH
Q 002267 48 PSSVRIGALFTYDSVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAIGPQSSGI 127 (945)
Q Consensus 48 ~~~i~IG~l~~l~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~ 127 (945)
.++.+||++.+++.++-.....|++ +.+++.|.+ .|.++.+.+.|+++++....+...++.+++|.+||.... ..
T Consensus 6 ~~t~~IGvi~~~~~p~~~~~~~gi~---~~l~~~Gy~-~g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~~-~~ 80 (302)
T 2qh8_A 6 AKTAKVAVSQIVEHPALDATRQGLL---DGLKAKGYE-EGKNLEFDYKTAQGNPAIAVQIARQFVGENPDVLVGIAT-PT 80 (302)
T ss_dssp -CCEEEEEEESSCCHHHHHHHHHHH---HHHHHTTCC-BTTTEEEEEEECTTCHHHHHHHHHHHHHTCCSEEEEESH-HH
T ss_pred cCCcEEEEEEeccChhHHHHHHHHH---HHHHHcCCC-CCCceEEEEecCCCCHHHHHHHHHHHHhCCCCEEEECCh-HH
Confidence 3678999985544443334555555 444445544 377899999999999999888888898888888887533 22
Q ss_pred HHHHHHhhcccCccEEecccCCCCCCC------CCCCceEEecCChhHHHHHHHHHHHHc--CCeEEEEEEEeCC-cccc
Q 002267 128 AHVISHVVNELNVPLLSFGATDPTLTS------LQYPYFLRTTQSDYYQMHAVADLVEYY--GWREVIAIFVDDD-YGRN 198 (945)
Q Consensus 128 ~~~va~~~~~~~iP~Is~~a~~~~ls~------~~~p~~~r~~p~d~~~~~ai~~~l~~~--~w~~v~ii~~d~~-~g~~ 198 (945)
...+.. ...++|+|..+..++.... ...+++.... +...+...++++... |.++|++|+.+.. .+..
T Consensus 81 ~~~~~~--~~~~iPvV~~~~~~~~~~~~v~~~~~~~~~~~gv~--~~~~~~~~~~~l~~~~Pg~~~I~~i~~~~~~~~~~ 156 (302)
T 2qh8_A 81 AQALVS--ATKTIPIVFTAVTDPVGAKLVKQLEQPGKNVTGLS--DLSPVEQHVELIKEILPNVKSIGVVYNPGEANAVS 156 (302)
T ss_dssp HHHHHH--HCSSSCEEEEEESCTTTTTSCSCSSSCCSSEEEEE--CCCCHHHHHHHHHHHSTTCCEEEEEECTTCHHHHH
T ss_pred HHHHHh--cCCCcCEEEEecCCHhhcCccccccCCCCCEEEEE--CCcCHHHHHHHHHHhCCCCcEEEEEecCCCcchHH
Confidence 333333 2679999987655443211 1124454443 222345566777666 9999999996543 3556
Q ss_pred hHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcC
Q 002267 199 GISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN 249 (945)
Q Consensus 199 ~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~ 249 (945)
..+.+++++++.|+++...... +..+....++++. .++++|+...+
T Consensus 157 r~~g~~~al~~~gi~~~~~~~~----~~~~~~~~~~~l~-~~~dai~~~~D 202 (302)
T 2qh8_A 157 LMELLKLSAAKHGIKLVEATAL----KSADVQSATQAIA-EKSDVIYALID 202 (302)
T ss_dssp HHHHHHHHHHHTTCEEEEEECS----SGGGHHHHHHHHG-GGCSEEEECSC
T ss_pred HHHHHHHHHHHcCCEEEEEecC----ChHHHHHHHHHHh-ccCCEEEECCc
Confidence 6788999999999988755332 3466777788876 37888877543
No 87
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=98.19 E-value=5.8e-05 Score=79.87 Aligned_cols=197 Identities=8% Similarity=-0.002 Sum_probs=125.8
Q ss_pred EEEEEEeccC-CccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccC-ChhHH
Q 002267 51 VRIGALFTYD-SVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAIGPQ-SSGIA 128 (945)
Q Consensus 51 i~IG~l~~l~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~-~s~~~ 128 (945)
.+||++.|.. ..+......|++.++++. |+++. +.++..++....+....++.+++.+||... .....
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~ 72 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFVVLAETAKQRAEQL--------GYEAT--IFDSQNDTAKESAHFDAIIAAGYDAIIFNPTDADGS 72 (290)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHT--------TCEEE--EEECTTCHHHHHHHHHHHHHTTCSEEEECCSCTTTT
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCEEE--EeCCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHH
Confidence 5799999863 444556777777777763 55554 567777887777777888888888887633 22222
Q ss_pred HHHHHhhcccCccEEecccCCCCCCCCCCCceEE-ecCChhHHHHHHHHHHHHc------CCeE--EEEEEEeC--Cccc
Q 002267 129 HVISHVVNELNVPLLSFGATDPTLTSLQYPYFLR-TTQSDYYQMHAVADLVEYY------GWRE--VIAIFVDD--DYGR 197 (945)
Q Consensus 129 ~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r-~~p~d~~~~~ai~~~l~~~------~w~~--v~ii~~d~--~~g~ 197 (945)
......+...++|+|.+....+. . +++.. +..++...+..+++++... |.++ |+++.... ....
T Consensus 73 ~~~~~~~~~~~iPvV~~~~~~~~---~--~~~~~~V~~D~~~~~~~~~~~L~~~~g~~~~G~r~i~i~~l~g~~~~~~~~ 147 (290)
T 2fn9_A 73 IANVKRAKEAGIPVFCVDRGINA---R--GLAVAQIYSDNYYGGVLAGEYFVKFLKEKYPDAKEIPYAELLGILSAQPTW 147 (290)
T ss_dssp HHHHHHHHHTTCCEEEESSCCSC---S--SSSSEEEEECHHHHHHHHHHHHHHHHHHHCSSCSCEEEEEEECCTTCHHHH
T ss_pred HHHHHHHHHCCCeEEEEecCCCC---C--CceEEEEeCCHHHHHHHHHHHHHHHhcccCCcccceeEEEEEcCCCCchHH
Confidence 23344556689999987543321 1 12223 5566777777788877665 7889 66665432 2345
Q ss_pred chHHHHHHHHhhc-CcEEEEeecCCCCCChHHHHHHHHhhcc--CCceEEEEEcChhhHHHHHHHHHhCCC
Q 002267 198 NGISVLGDALSKK-RAKISYKAPFSPGASRSAINSLLVGANL--MESRVFVVHVNPDTGLTIFSVAKSLGM 265 (945)
Q Consensus 198 ~~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vivl~~~~~~~~~~~~~a~~~g~ 265 (945)
.-.+.+.+++++. |+++.....-. .+..+....++++.+ .++++|+. .+...+..+++++++.|+
T Consensus 148 ~R~~gf~~~l~~~~g~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai~~-~~d~~a~g~~~al~~~g~ 215 (290)
T 2fn9_A 148 DRSNGFHSVVDQYPEFKMVAQQSAE--FDRDTAYKVTEQILQAHPEIKAIWC-GNDAMALGAMKACEAAGR 215 (290)
T ss_dssp HHHHHHHHHHTTSTTEEEEEEEECT--TCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCCCEEEEeccCC--CCHHHHHHHHHHHHHhCCCCcEEEE-CCchHHHHHHHHHHHCCC
Confidence 5678899999998 88765432111 233333344444432 35777664 566678889999999998
No 88
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=98.18 E-value=9.1e-05 Score=79.53 Aligned_cols=206 Identities=9% Similarity=-0.033 Sum_probs=129.9
Q ss_pred EEEEEeccC-CccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEe-cCCCChHHHHHHHHHHHhcCcEEEE-ccCChhHH
Q 002267 52 RIGALFTYD-SVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIR-DTNCSGFVGTMEALQLMENEVVAAI-GPQSSGIA 128 (945)
Q Consensus 52 ~IG~l~~l~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~-D~~~~~~~a~~~a~~li~~~v~aii-Gp~~s~~~ 128 (945)
+||++.|.. ..+......+++.++++. |+++ .+. ++..++....+....++.++|.+|| .|..+...
T Consensus 5 ~Igvi~~~~~~~~~~~~~~g~~~~~~~~--------g~~~--~~~~~~~~d~~~q~~~i~~li~~~vdgiii~~~~~~~~ 74 (316)
T 1tjy_A 5 RIAFIPKLVGVGFFTSGGNGAQEAGKAL--------GIDV--TYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGL 74 (316)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHHHHHH--------TCEE--EECCCSSCCHHHHHHHHHHHHHTTCSEEEECCSSSSTT
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHHHh--------CCEE--EEECCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHH
Confidence 799999864 444456778888877775 3444 444 4677888888888889988888754 56555443
Q ss_pred HHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHH---cCCeEEEEEEEe--CCcccchHHHH
Q 002267 129 HVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEY---YGWREVIAIFVD--DDYGRNGISVL 203 (945)
Q Consensus 129 ~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~---~~w~~v~ii~~d--~~~g~~~~~~l 203 (945)
..+...+...+||+|.+....+ .. .+..+....++...+..+++++.. .|-++|++|... +.......+.+
T Consensus 75 ~~~~~~a~~~gipvV~~d~~~~---~~-~~~~~v~~~D~~~~g~~~~~~L~~~~~~g~~~i~~i~g~~~~~~~~~r~~g~ 150 (316)
T 1tjy_A 75 CPALKRAMQRGVKILTWDSDTK---PE-CRSYYINQGTPKQLGSMLVEMAAHQVDKEKAKVAFFYSSPTVTDQNQWVKEA 150 (316)
T ss_dssp HHHHHHHHHTTCEEEEESSCCC---GG-GCSEEEESCCHHHHHHHHHHHHHHHHCSSSEEEEEEESCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHCcCEEEEecCCCC---CC-CceEEEecCCHHHHHHHHHHHHHHHcCCCCCEEEEEEcCCCChhHHHHHHHH
Confidence 4455667778999998754221 11 122232255666667777787654 478999999743 23345566788
Q ss_pred HHHHhhc--CcEEEEeecCCCCCChHHHHHHHHhhccC--CceEEEEEcChhhHHHHHHHHHhCCCCCCCeEEEEeC
Q 002267 204 GDALSKK--RAKISYKAPFSPGASRSAINSLLVGANLM--ESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIATD 276 (945)
Q Consensus 204 ~~~l~~~--g~~v~~~~~~~~~~~~~d~~~~l~~l~~~--~~~vivl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~ 276 (945)
.+++++. ++++.....-. .+..+....++++... ++++|+. .+...+..+++++++.| . .....++.|
T Consensus 151 ~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~aI~~-~nD~~A~g~~~al~~~G-~-~dv~VvG~D 222 (316)
T 1tjy_A 151 KAKISQEHPGWEIVTTQFGY--NDATKSLQTAEGIIKAYPDLDAIIA-PDANALPAAAQAAENLK-R-NNLAIVGFS 222 (316)
T ss_dssp HHHHHHHCTTEEEEEEEECT--TCHHHHHHHHHHHHHHCSSCCEEEE-CSTTHHHHHHHHHHHTT-C-CSCEEEEBC
T ss_pred HHHHHhhCCCcEEEEeccCC--CCHHHHHHHHHHHHHhCCCCCEEEE-CCCccHHHHHHHHHHcC-C-CCEEEEEeC
Confidence 8888765 66665432222 3444444455554433 4565554 45667888899999998 5 444444433
No 89
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=98.17 E-value=7.1e-05 Score=79.24 Aligned_cols=208 Identities=13% Similarity=0.001 Sum_probs=136.9
Q ss_pred ceEEEEEEeccC-CccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEE-ccCChh
Q 002267 49 SSVRIGALFTYD-SVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAI-GPQSSG 126 (945)
Q Consensus 49 ~~i~IG~l~~l~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aii-Gp~~s~ 126 (945)
..-+||++.|-. ..+-.....+++.++++. |+++. +.++..++..-.+....++.+++.+|| .|..+.
T Consensus 4 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~ 73 (291)
T 3l49_A 4 EGKTIGITAIGTDHDWDLKAYQAQIAEIERL--------GGTAI--ALDAGRNDQTQVSQIQTLIAQKPDAIIEQLGNLD 73 (291)
T ss_dssp TTCEEEEEESCCSSHHHHHHHHHHHHHHHHT--------TCEEE--EEECTTCHHHHHHHHHHHHHHCCSEEEEESSCHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCEEE--EEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCChh
Confidence 356899999964 333345667777776664 45554 446777887777777788888888776 555555
Q ss_pred HHHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHH--cCCeEEEEEEEeCC--cccchHHH
Q 002267 127 IAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEY--YGWREVIAIFVDDD--YGRNGISV 202 (945)
Q Consensus 127 ~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~--~~w~~v~ii~~d~~--~g~~~~~~ 202 (945)
........+...++|+|......+ +.+..+..++...+..+++++.. .|-++|+++..+.. ....-.+.
T Consensus 74 ~~~~~~~~~~~~~iPvV~~~~~~~-------~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~~R~~g 146 (291)
T 3l49_A 74 VLNPWLQKINDAGIPLFTVDTATP-------HAINNTTSNNYSIGAELALQMVADLGGKGNVLVFNGFYSVPVCKIRYDQ 146 (291)
T ss_dssp HHHHHHHHHHHTTCCEEEESCCCT-------TCSEEEEECHHHHHHHHHHHHHHHHTTCEEEEEECSCTTSHHHHHHHHH
T ss_pred hhHHHHHHHHHCCCcEEEecCCCC-------CcCceEecChHHHHHHHHHHHHHHcCCCceEEEEeCCCCCchHHHHHHH
Confidence 556667777788999998754332 12345566777778888888766 89999999974422 23345778
Q ss_pred HHHHHhhc-CcEEEEeecCCCC-CChHHHHHHHHhhccC-----CceEEEEEcChhhHHHHHHHHHhCCCCCCCeEEEEe
Q 002267 203 LGDALSKK-RAKISYKAPFSPG-ASRSAINSLLVGANLM-----ESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIAT 275 (945)
Q Consensus 203 l~~~l~~~-g~~v~~~~~~~~~-~~~~d~~~~l~~l~~~-----~~~vivl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~ 275 (945)
+.+++++. |+++.....+... .+.......+.++.+. ++++|+ +.+...+..+++++++.|+. +...++.
T Consensus 147 f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~--di~vvg~ 223 (291)
T 3l49_A 147 MKYVLEAFPDVKIIEPELRDVIPNTIQSAYSNVTDMLTKYPNEGDVGAIW-ACWDVPMIGATQALQAAGRT--DIRTYGV 223 (291)
T ss_dssp HHHHHHTCTTEEECSSCBCCCSSSHHHHHHHHHHHHHHHCCSTTSCCEEE-ESSHHHHHHHHHHHHHTTCC--SCEEEEE
T ss_pred HHHHHHHCCCCEEEeeeccCCCCCCHHHHHHHHHHHHHhCCCcCCcCEEE-ECCCchHHHHHHHHHHcCCC--CeEEEEe
Confidence 99999998 6776543332211 1223333444444333 567764 56777888999999999986 4444444
Q ss_pred C
Q 002267 276 D 276 (945)
Q Consensus 276 ~ 276 (945)
|
T Consensus 224 d 224 (291)
T 3l49_A 224 D 224 (291)
T ss_dssp E
T ss_pred c
Confidence 3
No 90
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=98.13 E-value=8.6e-05 Score=80.07 Aligned_cols=211 Identities=14% Similarity=0.066 Sum_probs=129.8
Q ss_pred ceEEEEEEeccCCccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChhH-
Q 002267 49 SSVRIGALFTYDSVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAIGPQSSGI- 127 (945)
Q Consensus 49 ~~i~IG~l~~l~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~- 127 (945)
.+.+||++.|.+..+-.....|++.++++ . .|+.+. +.++..++....+....+++++|.+||....+..
T Consensus 5 ~~~~Igvi~~~~~~~~~~~~~gi~~~a~~---~----~g~~l~--i~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~ 75 (325)
T 2x7x_A 5 PHFRIGVAQCSDDSWRHKMNDEILREAMF---Y----NGVSVE--IRSAGDDNSKQAEDVHYFMDEGVDLLIISANEAAP 75 (325)
T ss_dssp -CCEEEEEESCCSHHHHHHHHHHHHHHTT---S----SSCEEE--EEECTTCHHHHHHHHHHHHHTTCSEEEECCSSHHH
T ss_pred CCeEEEEEecCCCHHHHHHHHHHHHHHHH---c----CCcEEE--EeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHH
Confidence 46789999987322222344455544432 1 145554 5567778877777778888889988876444332
Q ss_pred HHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHc--CCeEEEEEEEeC--CcccchHHHH
Q 002267 128 AHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYY--GWREVIAIFVDD--DYGRNGISVL 203 (945)
Q Consensus 128 ~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~--~w~~v~ii~~d~--~~g~~~~~~l 203 (945)
.......+...++|+|.+....+. . +.+..+..++...+..+++++... |.++|++|..+. .....-.+.+
T Consensus 76 ~~~~~~~~~~~~iPvV~~~~~~~~---~--~~~~~V~~D~~~~g~~a~~~L~~~~~G~~~I~~i~~~~~~~~~~~R~~Gf 150 (325)
T 2x7x_A 76 MTPIVEEAYQKGIPVILVDRKILS---D--KYTAYIGADNYEIGRSVGNYIASSLKGKGNIVELTGLSGSTPAMERHQGF 150 (325)
T ss_dssp HHHHHHHHHHTTCCEEEESSCCSS---S--CSSEEEEECHHHHHHHHHHHHHHHTTTEEEEEEEESCTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCeEEEeCCCCCC---c--ceeEEEecCHHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHHH
Confidence 223445556689999987543221 1 233455667777777788877554 899999998542 2344557889
Q ss_pred HHHHhhc-CcEEEEeecCCCCCChHHHHHHHHhhcc--CCceEEEEEcChhhHHHHHHHHHhCCCCCCCeEEEEeCC
Q 002267 204 GDALSKK-RAKISYKAPFSPGASRSAINSLLVGANL--MESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIATDW 277 (945)
Q Consensus 204 ~~~l~~~-g~~v~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vivl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~~ 277 (945)
.+++++. |+++.....-. .+..+....+.++.. .++++|+ +.+...+..+++++++.|+ ..+...++.|.
T Consensus 151 ~~al~~~pg~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~aI~-~~nd~~A~g~~~al~~~Gi-p~dv~vig~D~ 223 (325)
T 2x7x_A 151 MAAISKFPDIKLIDKADAA--WERGPAEIEMDSMLRRHPKIDAVY-AHNDRIAPGAYQAAKMAGR-EKEMIFVGIDA 223 (325)
T ss_dssp HHHHHTCTEEEEEEEEECT--TSHHHHHHHHHHHHHHCSCCCEEE-ESSTTHHHHHHHHHHHTTC-TTSSEEEEEEC
T ss_pred HHHHHhCCCCEEEeeecCC--CCHHHHHHHHHHHHHhCCCCCEEE-ECCCchHHHHHHHHHHcCC-CCCeEEEEECC
Confidence 9999998 88765422111 233333444444432 3477766 4556678888999999996 33445555443
No 91
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=98.13 E-value=3.4e-05 Score=82.29 Aligned_cols=205 Identities=8% Similarity=-0.073 Sum_probs=132.1
Q ss_pred ceEEEEEEeccC-CccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEE-ccCChh
Q 002267 49 SSVRIGALFTYD-SVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAI-GPQSSG 126 (945)
Q Consensus 49 ~~i~IG~l~~l~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aii-Gp~~s~ 126 (945)
.+.+||+++|-. ..+-.....+++-+.++. |+++.+...+...++....+....++.+++.+|| .|....
T Consensus 4 ~~~~Igvi~~~~~~~~~~~~~~g~~~~a~~~--------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~ 75 (304)
T 3o1i_D 4 SDEKICAIYPHLKDSYWLSVNYGMVSEAEKQ--------GVNLRVLEAGGYPNKSRQEQQLALCTQWGANAIILGTVDPH 75 (304)
T ss_dssp -CCEEEEEESCSCSHHHHHHHHHHHHHHHHH--------TCEEEEEECSSTTCHHHHHHHHHHHHHHTCSEEEECCSSTT
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHHHHHHc--------CCeEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChh
Confidence 467999999864 333345667777777664 5666554444433888878888888888887776 444443
Q ss_pred HHHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHcC-----CeEEEEEEEe--CCcccch
Q 002267 127 IAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYG-----WREVIAIFVD--DDYGRNG 199 (945)
Q Consensus 127 ~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~-----w~~v~ii~~d--~~~g~~~ 199 (945)
........+. .++|+|.+....+.......+.+..+..++...+..+++++...| -++|+++... ......-
T Consensus 76 ~~~~~~~~~~-~~iPvV~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~~~~i~~i~~~~~~~~~~~R 154 (304)
T 3o1i_D 76 AYEHNLKSWV-GNTPVFATVNQLDLDEEQSTLLKGEVGVDWYWMGYEAGKYLAERHPKGSGKTNIALLLGPRTRGGTKPV 154 (304)
T ss_dssp SSTTTHHHHT-TTSCEEECSSCCCCCTTTGGGEEEECCCCHHHHHHHHHHHHHTTSBTTTCCEEEEEECCCC-----CHH
T ss_pred HHHHHHHHHc-CCCCEEEecCCCcccccCCCceEEEEecCHHHHHHHHHHHHHHhcccCCCCCEEEEEECCCCcchHHHH
Confidence 2223344455 899999874433211111224566677777777888888887777 8999999744 2344556
Q ss_pred HHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhc-cCCceEEEEEcChhhHHHHHHHHHhCCCC
Q 002267 200 ISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGAN-LMESRVFVVHVNPDTGLTIFSVAKSLGMT 266 (945)
Q Consensus 200 ~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~-~~~~~vivl~~~~~~~~~~~~~a~~~g~~ 266 (945)
.+.+.+++++.|+++.... ....+.......+.++. ..++++ | +++...+..++++++++|+.
T Consensus 155 ~~gf~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~a-i-~~~d~~a~g~~~al~~~g~~ 218 (304)
T 3o1i_D 155 TTGFYEAIKNSDIHIVDSF--WADNDKELQRNLVQRVIDMGNIDY-I-VGSAVAIEAAISELRSADKT 218 (304)
T ss_dssp HHHHHHTTTTBTEEEEECC--CCCSCHHHHHHHHHHHHHHSCCSE-E-EECHHHHHHHHHHHTTTTCG
T ss_pred HHHHHHHHhcCCCEEEEee--cCCCcHHHHHHHHHHHHcCCCCCE-E-EecCcchHHHHHHHHhcCCC
Confidence 7899999999998887543 22233343333444332 335778 4 55778888999999999975
No 92
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=98.10 E-value=0.00018 Score=76.40 Aligned_cols=200 Identities=13% Similarity=0.087 Sum_probs=128.6
Q ss_pred eEEEEEEeccCCccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChhHHH
Q 002267 50 SVRIGALFTYDSVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAIGPQSSGIAH 129 (945)
Q Consensus 50 ~i~IG~l~~l~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~~~ 129 (945)
+.+||++-.++.++-.....|++-++++ .|. .|.++.+.+.|+++++.+..+...++.+++|.+||.... ....
T Consensus 2 ~~~Igvi~~~~~p~~~~i~~gi~~~l~~---~gy--~g~~v~l~~~~~~~~~~~~~~~~~~l~~~~vDgII~~~~-~~~~ 75 (295)
T 3lft_A 2 NAKIGVLQFVSHPSLDLIYKGIQDGLAE---EGY--KDDQVKIDFMNSEGDQSKVATMSKQLVANGNDLVVGIAT-PAAQ 75 (295)
T ss_dssp CEEEEEEECSCCHHHHHHHHHHHHHHHH---TTC--CGGGEEEEEEECTTCHHHHHHHHHHHTTSSCSEEEEESH-HHHH
T ss_pred ceEEEEEEccCChhHHHHHHHHHHHHHH---cCC--CCCceEEEEecCCCCHHHHHHHHHHHHhcCCCEEEECCc-HHHH
Confidence 4689988333333323455565555444 332 356899999999999999888888888888888886432 2222
Q ss_pred HHHHhhcccCccEEecccCCCCCCC------CCCCceEEecCChhHHHHHHHHHHHHc--CCeEEEEEEEeCC-cccchH
Q 002267 130 VISHVVNELNVPLLSFGATDPTLTS------LQYPYFLRTTQSDYYQMHAVADLVEYY--GWREVIAIFVDDD-YGRNGI 200 (945)
Q Consensus 130 ~va~~~~~~~iP~Is~~a~~~~ls~------~~~p~~~r~~p~d~~~~~ai~~~l~~~--~w~~v~ii~~d~~-~g~~~~ 200 (945)
.+.. ...++|+|..+..++.... ....++.... +..-+...++++... |.++|++|+.+.. .+....
T Consensus 76 ~~~~--~~~~iPvV~~~~~~~~~~~~v~~~~~~~~~~~gv~--~~~~~~~~~~~l~~~~pg~~~I~~i~~~~~~~~~~r~ 151 (295)
T 3lft_A 76 GLAS--ATKDLPVIMAAITDPIGANLVKDLKKPGGNVTGVS--DHNPAQQQVELIKALTPNVKTIGALYSSSEDNSKTQV 151 (295)
T ss_dssp HHHH--HCSSSCEEEESCSCTTTTTSCSCSSCCCSSEEEEE--ECCCHHHHHHHHHHHCTTCCEEEEEEETTCHHHHHHH
T ss_pred HHHH--cCCCCCEEEEeccChhhcCccccccCCCCcEEEEE--CCccHHHHHHHHHHhCCCCcEEEEEeCCCCcchHHHH
Confidence 3332 2469999976554443211 1113444443 333355666777666 8999999997644 245567
Q ss_pred HHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcChhhHHHHHHHHHhCCC
Q 002267 201 SVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGM 265 (945)
Q Consensus 201 ~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~~~~~~~~~~a~~~g~ 265 (945)
+.+++++++.|+++...... +..+....++++. .++++|+...+ ..+...++++.+.+.
T Consensus 152 ~g~~~al~~~gi~~~~~~~~----~~~~~~~~~~~l~-~~~dai~~~~D-~~a~g~~~~l~~~~~ 210 (295)
T 3lft_A 152 EEFKAYAEKAGLTVETFAVP----STNEIASTVTVMT-SKVDAIWVPID-NTIASGFPTVVSSNQ 210 (295)
T ss_dssp HHHHHHHHHTTCEEEEEEES----SGGGHHHHHHHHT-TTCSEEEECSC-HHHHHTHHHHHHHTT
T ss_pred HHHHHHHHHcCCEEEEEecC----CHHHHHHHHHHHH-hcCCEEEECCc-hhHHHHHHHHHHHHH
Confidence 88999999999988754332 2456677788876 47888877543 445556677777664
No 93
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=98.08 E-value=9.5e-05 Score=78.04 Aligned_cols=202 Identities=11% Similarity=0.011 Sum_probs=127.1
Q ss_pred ceEEEEEEecc-CCccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChhH
Q 002267 49 SSVRIGALFTY-DSVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAIGPQSSGI 127 (945)
Q Consensus 49 ~~i~IG~l~~l-~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~ 127 (945)
...+||++.|. +..+......|++.++++. |+++.+ .++..++....+....+++++|.+||.......
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 76 (285)
T 3c3k_A 7 KTGMLLVMVSNIANPFCAAVVKGIEKTAEKN--------GYRILL--CNTESDLARSRSCLTLLSGKMVDGVITMDALSE 76 (285)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHT--------TCEEEE--EECTTCHHHHHHHTHHHHTTCCSEEEECCCGGG
T ss_pred CCCEEEEEeCCCCCchHHHHHHHHHHHHHHc--------CCEEEE--EeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 45689999985 3444445667777666652 566654 456667766666667777788988876433322
Q ss_pred HHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEeC--CcccchHHHHHH
Q 002267 128 AHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDD--DYGRNGISVLGD 205 (945)
Q Consensus 128 ~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~--~~g~~~~~~l~~ 205 (945)
...+ ..+. .++|+|.+....+ + +.+..+..++...+..+++++...|.++|++|..+. .....-.+.+.+
T Consensus 77 ~~~~-~~l~-~~iPvV~~~~~~~---~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~gf~~ 148 (285)
T 3c3k_A 77 LPEL-QNII-GAFPWVQCAEYDP---L---STVSSVSIDDVAASEYVVDQLVKSGKKRIALINHDLAYQYAQHRESGYLN 148 (285)
T ss_dssp HHHH-HHHH-TTSSEEEESSCCT---T---SSSCEEECCHHHHHHHHHHHHHHTTCCCEEEEECCTTSHHHHHHHHHHHH
T ss_pred hHHH-HHHh-cCCCEEEEccccC---C---CCCCEEEEChHHHHHHHHHHHHHcCCCeEEEEeCCCccccHHHHHHHHHH
Confidence 2223 3345 8999998754322 1 122345566666677788888777999999998653 234455778899
Q ss_pred HHhhcCcEEE-EeecCCCCCChHHHHHHHHh--hccC--CceEEEEEcChhhHHHHHHHHHhCCCCCCCeEEE
Q 002267 206 ALSKKRAKIS-YKAPFSPGASRSAINSLLVG--ANLM--ESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWI 273 (945)
Q Consensus 206 ~l~~~g~~v~-~~~~~~~~~~~~d~~~~l~~--l~~~--~~~vivl~~~~~~~~~~~~~a~~~g~~~~~~~wi 273 (945)
++++.|+++. ..... +..+....+.+ +.+. ++++|+. .+...+..+++++++.|+..++-+-+
T Consensus 149 ~l~~~g~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~A~g~~~al~~~g~~vP~di~v 216 (285)
T 3c3k_A 149 RLKFHGLDYSRISYAE----NLDYMAGKLATFSLLKSAVKPDAIFA-ISDVLAAGAIQALTESGLSIPQDVAV 216 (285)
T ss_dssp HHHHHTCCCCEEEECS----SSSHHHHHHHHHHHHSSSSCCSEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHcCCCceEeecCC----ChHHHHHHHHHHHHHcCCCCCeEEEE-CCHHHHHHHHHHHHHcCCCCCCceEE
Confidence 9999987643 11122 22233344444 4333 4677664 56667888999999999875543333
No 94
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=98.08 E-value=6.5e-05 Score=80.00 Aligned_cols=190 Identities=11% Similarity=0.122 Sum_probs=126.4
Q ss_pred CCceEEEEEEeccCCccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChh
Q 002267 47 RPSSVRIGALFTYDSVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAIGPQSSG 126 (945)
Q Consensus 47 ~~~~i~IG~l~~l~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~ 126 (945)
..++++||++--.+.+.-...+.|++ +.+++.|.. .|..+++.+.|.++|+....+.+.+|+.+++.+|++- .+.
T Consensus 5 ~~~~~~igi~q~~~hp~ld~~~~G~~---~~L~~~G~~-~g~nv~~~~~~a~gd~~~~~~~~~~l~~~~~DlIiai-~t~ 79 (302)
T 3lkv_A 5 MAKTAKVAVSQIVEHPALDATRQGLL---DGLKAKGYE-EGKNLEFDYKTAQGNPAIAVQIARQFVGENPDVLVGI-ATP 79 (302)
T ss_dssp --CCEEEEEEESCCCHHHHHHHHHHH---HHHHHTTCC-BTTTEEEEEEECTTCHHHHHHHHHHHHTTCCSEEEEE-SHH
T ss_pred hcCCceEEEEEeecChhHHHHHHHHH---HHHHhhCcc-cCCcEEEEEEeCCCCHHHHHHHHHHHHhcCCcEEEEc-CCH
Confidence 45789999885444322234556665 445555555 5788999999999999999999999999999888863 344
Q ss_pred HHHHHHHhhcccCccEEecccCCCCCCC------CCCCceEEecCChhHHHHHHHHHHHHc--CCeEEEEEEEeCCc-cc
Q 002267 127 IAHVISHVVNELNVPLLSFGATDPTLTS------LQYPYFLRTTQSDYYQMHAVADLVEYY--GWREVIAIFVDDDY-GR 197 (945)
Q Consensus 127 ~~~~va~~~~~~~iP~Is~~a~~~~ls~------~~~p~~~r~~p~d~~~~~ai~~~l~~~--~w~~v~ii~~d~~~-g~ 197 (945)
.+.+++. ...++|+|-.+.++|.... ...+++..+. +........++++++ +.++|+++|....- +.
T Consensus 80 aa~a~~~--~~~~iPVVf~~v~dp~~~~l~~~~~~~g~nvtGv~--~~~~~~~~l~l~~~l~P~~k~vgvi~~~~~~~s~ 155 (302)
T 3lkv_A 80 TAQALVS--ATKTIPIVFTAVTDPVGAKLVKQLEQPGKNVTGLS--DLSPVEQHVELIKEILPNVKSIGVVYNPGEANAV 155 (302)
T ss_dssp HHHHHHH--HCSSSCEEEEEESCTTTTTSCSCSSSCCSSEEEEE--CCCCHHHHHHHHHHHSTTCCEEEEEECTTCHHHH
T ss_pred HHHHHHh--hcCCCCeEEEecCCcchhhhcccccCCCCcEEEEE--CCcCHHHHHHHHHHhCCCCCEEEEEeCCCcccHH
Confidence 4444443 3457999876666665332 1224555443 222234455666554 68999999976443 34
Q ss_pred chHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcCh
Q 002267 198 NGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNP 250 (945)
Q Consensus 198 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~ 250 (945)
...+.+++.+++.|+++..... .+..++...++.+. .+.+++++..+.
T Consensus 156 ~~~~~~~~~~~~~g~~~v~~~~----~~~~~~~~~~~~l~-~~~d~i~~~~d~ 203 (302)
T 3lkv_A 156 SLMELLKLSAAKHGIKLVEATA----LKSADVQSATQAIA-EKSDVIYALIDN 203 (302)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEC----SSGGGHHHHHHHHH-TTCSEEEECSCH
T ss_pred HHHHHHHHHHHHcCCEEEEEec----CChHHHHHHHHhcc-CCeeEEEEeCCc
Confidence 5577888999999999876432 24566777777764 567888876554
No 95
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=98.08 E-value=0.00016 Score=77.07 Aligned_cols=212 Identities=12% Similarity=0.049 Sum_probs=130.9
Q ss_pred eEEEEEEeccC-CccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChhH-
Q 002267 50 SVRIGALFTYD-SVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAIGPQSSGI- 127 (945)
Q Consensus 50 ~i~IG~l~~l~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~- 127 (945)
+++||++.|.. ..+......|++.++++. |+.+. +.++..++....+....++.++|.+||-...+..
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~l~--~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~ 71 (306)
T 2vk2_A 2 PLTVGFSQVGSESGWRAAETNVAKSEAEKR--------GITLK--IADGQQKQENQIKAVRSFVAQGVDAIFIAPVVATG 71 (306)
T ss_dssp CCEEEEEECCCCSHHHHHHHHHHHHHHHHH--------TCEEE--EEECTTCHHHHHHHHHHHHHHTCSEEEECCSSSSS
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHHc--------CCEEE--EeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhh
Confidence 57899999964 444556677777777664 45554 4567777777677777788788888775333221
Q ss_pred HHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHcC---CeEEEEEEEeC--CcccchHHH
Q 002267 128 AHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYG---WREVIAIFVDD--DYGRNGISV 202 (945)
Q Consensus 128 ~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~---w~~v~ii~~d~--~~g~~~~~~ 202 (945)
.......+...++|+|......+... ..+++..+..++...+..+++.+...| -++|++|.... .....-.+.
T Consensus 72 ~~~~~~~~~~~~iPvV~~~~~~~~~~--~~~~~~~V~~D~~~~g~~a~~~L~~~g~g~~~~I~~i~~~~~~~~~~~R~~G 149 (306)
T 2vk2_A 72 WEPVLKEAKDAEIPVFLLDRSIDVKD--KSLYMTTVTADNILEGKLIGDWLVKEVNGKPCNVVELQGTVGASVAIDRKKG 149 (306)
T ss_dssp CHHHHHHHHHTTCCEEEESSCCCCSC--GGGSSEEEECCHHHHHHHHHHHHHHHHTTSCEEEEEEECSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEEEecCCCCCCC--ccceEEEEecCHHHHHHHHHHHHHHhcCCCCCeEEEEEcCCCChhHHHHHHH
Confidence 12334445667999998754322111 011344566677777777887776655 78999998542 233455778
Q ss_pred HHHHHhhcCc-EEEEeecCCCCCChHHHHHHHHhhcc-----CCceEEEEEcChhhHHHHHHHHHhCCCCCCC-eEEEEe
Q 002267 203 LGDALSKKRA-KISYKAPFSPGASRSAINSLLVGANL-----MESRVFVVHVNPDTGLTIFSVAKSLGMTAGS-YVWIAT 275 (945)
Q Consensus 203 l~~~l~~~g~-~v~~~~~~~~~~~~~d~~~~l~~l~~-----~~~~vivl~~~~~~~~~~~~~a~~~g~~~~~-~~wi~~ 275 (945)
+++++++.|. ++.....-. .+..+-...++++.+ .++++|+. .+...+..+++++++.|+..++ ...++.
T Consensus 150 f~~al~~~g~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~~~~ai~~-~nd~~A~g~~~al~~~G~~vP~di~vig~ 226 (306)
T 2vk2_A 150 FAEAIKNAPNIKIIRSQSGD--FTRSKGKEVMESFIKAENNGKNICMVYA-HNDDMVIGAIQAIKEAGLKPGKDILTGSI 226 (306)
T ss_dssp HHHHTTTCTTEEEEEEEECT--TCHHHHHHHHHHHHHHTTTTTTCCEEEE-SSHHHHHHHHHHHHHTTCCBTTTBEEEEE
T ss_pred HHHHHhhCCCeEEEEeccCC--CcHHHHHHHHHHHHHhCCCCCCeeEEEE-CCchHHHHHHHHHHHcCCCCCCCeEEEee
Confidence 9999999885 433221111 233333334444432 35677654 5666788899999999987554 344443
Q ss_pred C
Q 002267 276 D 276 (945)
Q Consensus 276 ~ 276 (945)
|
T Consensus 227 D 227 (306)
T 2vk2_A 227 D 227 (306)
T ss_dssp E
T ss_pred c
Confidence 3
No 96
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=98.08 E-value=1.6e-05 Score=83.49 Aligned_cols=202 Identities=10% Similarity=0.008 Sum_probs=116.4
Q ss_pred EEEEEecc-CCccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChhHHHH
Q 002267 52 RIGALFTY-DSVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAIGPQSSGIAHV 130 (945)
Q Consensus 52 ~IG~l~~l-~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~~~~ 130 (945)
+||+++|- +..+-.....+++-++++. |+++. +.++..++....+....++.+++.+||....+... .
T Consensus 1 ~Igvi~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~ 69 (276)
T 2h0a_A 1 TVSVLLPFVATEFYRRLVEGIEGVLLEQ--------RYDLA--LFPILSLARLKRYLENTTLAYLTDGLILASYDLTE-R 69 (276)
T ss_dssp CEEEEECCSCCHHHHHHHHHHHHHHGGG--------TCEEE--ECCCCSCCCCC---------CCCSEEEEESCCCC---
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHC--------CCEEE--EEeCCCchhhHHHHHHHHHhCCCCEEEEecCCCCH-H
Confidence 48899874 3333334555555555442 45554 45555555444445566677788877653222222 3
Q ss_pred HHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEeC-C-----ccc-chHHHH
Q 002267 131 ISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDD-D-----YGR-NGISVL 203 (945)
Q Consensus 131 va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~-~-----~g~-~~~~~l 203 (945)
....+...++|+|......+ + +..+..++...+..+++++...|.++|++|..+. . ... .-.+.+
T Consensus 70 ~~~~~~~~~iPvV~~~~~~~-------~-~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~~~~~~R~~gf 141 (276)
T 2h0a_A 70 FEEGRLPTERPVVLVDAQNP-------R-YDSVYLDNRLGGRLAGAYLARFPGPIFAIAVEEEPDRAFRRTVFAERMAGF 141 (276)
T ss_dssp ----CCSCSSCEEEESSCCT-------T-SEEEEECSHHHHHHHHHHHTTSSSCEEEEEECCSCCC---CCHHHHHHHHH
T ss_pred HHHHHhhcCCCEEEEeccCC-------C-CCEEEEccHHHHHHHHHHHHHcCCCeEEEEecCcccccccchhHHHHHHHH
Confidence 34456678999998754322 1 3456667777788888888777999999998654 2 344 567889
Q ss_pred HHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccC--CceEEEEEcChhhHHHHHHHHHhCCCCCCCeEEE
Q 002267 204 GDALSKKRAKISYKAPFSPGASRSAINSLLVGANLM--ESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWI 273 (945)
Q Consensus 204 ~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~--~~~vivl~~~~~~~~~~~~~a~~~g~~~~~~~wi 273 (945)
.+++++.|+.+.....+....+..+-...+.++.+. .+++|+ +.+...+..+++++++.|+..++-+.+
T Consensus 142 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~v 212 (276)
T 2h0a_A 142 QEALKEAGRPFSPDRLYITRHSQEGGRLALRHFLEKASPPLNVF-AGADQVALGVLEEAVRLGLTPGRDVRV 212 (276)
T ss_dssp HHHHHHTTCCCCGGGEEEECSSHHHHHHHHHHHHTTCCSSEEEE-CSSHHHHHHHHHHHHTTSCTTTTSEEE
T ss_pred HHHHHHcCCCCChHHeeecCCChHHHHHHHHHHHhCCCCCCEEE-ECCcHHHHHHHHHHHHcCCCCCCCeEE
Confidence 999999997643211111112334444455555443 477776 567778889999999999876544443
No 97
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=98.08 E-value=0.00013 Score=78.04 Aligned_cols=204 Identities=12% Similarity=0.018 Sum_probs=129.1
Q ss_pred EEEEEEeccC-CccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccC-ChhHH
Q 002267 51 VRIGALFTYD-SVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAIGPQ-SSGIA 128 (945)
Q Consensus 51 i~IG~l~~l~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~-~s~~~ 128 (945)
-+||++.|.. ..+......+++.++++. |+ +++.+.++..++....+....++.+++.+||-.. .....
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~-~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~ 73 (309)
T 2fvy_A 3 TRIGVTIYKYDDNFMSVVRKAIEQDAKAA--------PD-VQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAA 73 (309)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHTC--------TT-EEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCSSGGGH
T ss_pred cEEEEEeccCCcHHHHHHHHHHHHHHHhc--------CC-eEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcchh
Confidence 4799999853 333345566666555543 44 3455667777887777777778888888777533 33323
Q ss_pred HHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHH------------cCCeEEEEEEEe--CC
Q 002267 129 HVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEY------------YGWREVIAIFVD--DD 194 (945)
Q Consensus 129 ~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~------------~~w~~v~ii~~d--~~ 194 (945)
......+...++|+|.+....+...-..++.+..+..++...+..+++++.. .|-++|++|... ..
T Consensus 74 ~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~V~~d~~~~g~~~~~~L~~~~~~~~~~~~~g~g~~~i~~i~~~~~~~ 153 (309)
T 2fvy_A 74 GTVIEKARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLLKGEPGHP 153 (309)
T ss_dssp HHHHHHHHTTTCCEEEESSCCCHHHHHTCTTEEEEECCHHHHHHHHHHHHHHHHHHCGGGCTTCSSSEEEEEEECSTTCH
T ss_pred HHHHHHHHHCCCcEEEecCCCCcccccccCccEEEecCHHHHHHHHHHHHHHHHhhcccccccCCCceEEEEEEcCCCCc
Confidence 3445556678999998754322110012345667777888788888887755 688899999754 23
Q ss_pred cccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccC----CceEEEEEcChhhHHHHHHHHHhCC
Q 002267 195 YGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLM----ESRVFVVHVNPDTGLTIFSVAKSLG 264 (945)
Q Consensus 195 ~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~----~~~vivl~~~~~~~~~~~~~a~~~g 264 (945)
....-.+.+.+++++.|+.+.....+....+..+-...++++.+. ++++|+. .+...+..++++++++|
T Consensus 154 ~~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~-~~d~~a~g~~~al~~~g 226 (309)
T 2fvy_A 154 DAEARTTYVIKELNDKGIKTEQLQLDTAMWDTAQAKDKMDAWLSGPNANKIEVVIA-NNDAMAMGAVEALKAHN 226 (309)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEEECTTCHHHHHHHHHHHHTSTTGGGCCEEEE-SSHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHhcCCceEEEEEecCCCCHHHHHHHHHHHHHhCCCCCccEEEE-CCchhHHHHHHHHHHcC
Confidence 345567889999999997654322222112344444455554433 5677654 56667888999999988
No 98
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=98.05 E-value=0.00014 Score=77.11 Aligned_cols=210 Identities=11% Similarity=-0.016 Sum_probs=131.9
Q ss_pred CceEEEEEEecc-CCccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChh
Q 002267 48 PSSVRIGALFTY-DSVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAIGPQSSG 126 (945)
Q Consensus 48 ~~~i~IG~l~~l-~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~ 126 (945)
...-+||++.|- +..+-.....|++.++++. |+++. +.++..++....+....++.++|.+||-.....
T Consensus 18 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~ 87 (293)
T 2iks_A 18 GRTRSIGLVIPDLENTSYTRIANYLERQARQR--------GYQLL--IACSEDQPDNEMRCIEHLLQRQVDAIIVSTSLP 87 (293)
T ss_dssp CCCCEEEEEESCSCSHHHHHHHHHHHHHHHHT--------TCEEE--EEECTTCHHHHHHHHHHHHHTTCSEEEECCSSC
T ss_pred CCCcEEEEEeCCCcCcHHHHHHHHHHHHHHHC--------CCEEE--EEcCCCCHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 345789999985 3333345666666666652 56655 456666777666677777788888877533322
Q ss_pred HHHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEeC--CcccchHHHHH
Q 002267 127 IAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDD--DYGRNGISVLG 204 (945)
Q Consensus 127 ~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~--~~g~~~~~~l~ 204 (945)
........+...++|+|.+....+ + +.+..+..++...+..+++++...|.++|++|.... .....-.+.+.
T Consensus 88 ~~~~~~~~~~~~~iPvV~~~~~~~---~---~~~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~ 161 (293)
T 2iks_A 88 PEHPFYQRWANDPFPIVALDRALD---R---EHFTSVVGADQDDAEMLAEELRKFPAETVLYLGALPELSVSFLREQGFR 161 (293)
T ss_dssp TTCHHHHTTTTSSSCEEEEESCCC---T---TTCEEEEECHHHHHHHHHHHHHTSCCSSEEEEEECTTSHHHHHHHHHHH
T ss_pred CcHHHHHHHHhCCCCEEEECCccC---c---CCCCEEEecCHHHHHHHHHHHHHCCCCEEEEEecCcccccHHHHHHHHH
Confidence 222234556678999998754322 1 223445567777777788888777999999998653 23445678899
Q ss_pred HHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccC--CceEEEEEcChhhHHHHHHHHHhCCCCCCC-eEEEEeC
Q 002267 205 DALSKKRAKISYKAPFSPGASRSAINSLLVGANLM--ESRVFVVHVNPDTGLTIFSVAKSLGMTAGS-YVWIATD 276 (945)
Q Consensus 205 ~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~--~~~vivl~~~~~~~~~~~~~a~~~g~~~~~-~~wi~~~ 276 (945)
+++++.|++......-. .+..+-...+.++.+. .+++|+. .+...+..+++++++.|+..++ ...++.|
T Consensus 162 ~~l~~~g~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di~vvg~d 233 (293)
T 2iks_A 162 TAWKDDPREVHFLYANS--YEREAAAQLFEKWLETHPMPQALFT-TSFALLQGVMDVTLRRDGKLPSDLAIATFG 233 (293)
T ss_dssp HHHTTCCCCEEEEEESS--SCHHHHHHHHHHHTTTSCCCSEEEE-SSHHHHHHHHHHHHHHHSSCCSSCEEEEES
T ss_pred HHHHHcCCCccEEEcCC--CChhhHHHHHHHHHhcCCCCCEEEE-CChHHHHHHHHHHHHcCCCCCCceEEEEEC
Confidence 99999997433221111 2344444555555443 4666654 5666788899999999987544 4445444
No 99
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=98.05 E-value=0.0001 Score=77.96 Aligned_cols=211 Identities=8% Similarity=-0.013 Sum_probs=132.0
Q ss_pred CceEEEEEEeccC-CccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChh
Q 002267 48 PSSVRIGALFTYD-SVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAIGPQSSG 126 (945)
Q Consensus 48 ~~~i~IG~l~~l~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~ 126 (945)
...-+||+++|-. ..+-.....|++.++++. |+++.+ .++..++....+....+++++|.+||-.....
T Consensus 14 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 83 (289)
T 2fep_A 14 KKTTTVGVIIPDISSIFYSELARGIEDIATMY--------KYNIIL--SNSDQNMEKELHLLNTMLGKQVDGIVFMGGNI 83 (289)
T ss_dssp --CCEEEEEESCTTSHHHHHHHHHHHHHHHHT--------TCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECCSCC
T ss_pred CCCCeEEEEeCCCCCchHHHHHHHHHHHHHHc--------CCEEEE--EeCCCCHHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 4467899999853 334445667777666652 566654 46667777766777778888888777532221
Q ss_pred HHHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEeC---CcccchHHHH
Q 002267 127 IAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDD---DYGRNGISVL 203 (945)
Q Consensus 127 ~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~---~~g~~~~~~l 203 (945)
... ....+...++|+|.+....+ + +.+..+..++..-+..+++++...|.++|++|..+. .....-.+.+
T Consensus 84 ~~~-~~~~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf 156 (289)
T 2fep_A 84 TDE-HVAEFKRSPVPIVLAASVEE---Q---EETPSVAIDYEQAIYDAVKLLVDKGHTDIAFVSGPMAEPINRSKKLQGY 156 (289)
T ss_dssp CHH-HHHHHHHSSSCEEEESCCCT---T---CCSCEEECCHHHHHHHHHHHHHHTTCSSEEEEESCTTSHHHHTTHHHHH
T ss_pred CHH-HHHHHHhcCCCEEEEccccC---C---CCCCEEEECcHHHHHHHHHHHHHCCCCeEEEEeCCccccccHHHHHHHH
Confidence 122 23334567999998754322 1 122345567777778888888778999999998643 2345667889
Q ss_pred HHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccC--CceEEEEEcChhhHHHHHHHHHhCCCCCCC-eEEEEeC
Q 002267 204 GDALSKKRAKISYKAPFSPGASRSAINSLLVGANLM--ESRVFVVHVNPDTGLTIFSVAKSLGMTAGS-YVWIATD 276 (945)
Q Consensus 204 ~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~--~~~vivl~~~~~~~~~~~~~a~~~g~~~~~-~~wi~~~ 276 (945)
.+++++.|+++.....+....+..+-...++++.+. ++++|+. .+...+..+++++++.|+..++ ...++.|
T Consensus 157 ~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~-~~d~~A~g~~~al~~~G~~vP~di~vvg~D 231 (289)
T 2fep_A 157 KRALEEANLPFNEQFVAEGDYTYDSGLEALQHLMSLDKKPTAILS-ATDEMALGIIHAAQDQGLSIPEDLDIIGFD 231 (289)
T ss_dssp HHHHHHTTCCCCGGGEEECCSCHHHHHHHHHHHTTSSSCCSEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEEEEEE
T ss_pred HHHHHHcCCCCChheEeeCCCCHHHHHHHHHHHHcCCCCCCEEEE-CCHHHHHHHHHHHHHcCCCCCCCeEEEEEC
Confidence 999999997653211111112344444555665443 4676654 5666788999999999987543 4444444
No 100
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=98.04 E-value=0.00026 Score=77.18 Aligned_cols=214 Identities=12% Similarity=0.017 Sum_probs=137.8
Q ss_pred eEEEEEEeccC-C-ccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHh--cCcEEEEccCCh
Q 002267 50 SVRIGALFTYD-S-VIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLME--NEVVAAIGPQSS 125 (945)
Q Consensus 50 ~i~IG~l~~l~-~-~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~--~~v~aiiGp~~s 125 (945)
..+||++.|-. . .+-.....+++-+.++. |+++.+ .++..++..-.+...+++. +++.+||-....
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~--------g~~~~~--~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~~~ 72 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARDL--------GLDLRI--LYAERDPQNTLQQARELFQGRDKPDYLMLVNEQ 72 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHHH--------TCEEEE--EECTTCHHHHHHHHHHHHHSSSCCSEEEEECCS
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHHc--------CCeEEE--EECCCCHHHHHHHHHHHHhcCCCCCEEEEeCch
Confidence 46899999975 2 45556778888887775 555554 4777788887888888988 577776643333
Q ss_pred hHHHHHHHhhcccCccEEecccCCCCCCC-------CCCC-ceEEecCChhHHHHHHHHHHHHcC------C-eEEEEEE
Q 002267 126 GIAHVISHVVNELNVPLLSFGATDPTLTS-------LQYP-YFLRTTQSDYYQMHAVADLVEYYG------W-REVIAIF 190 (945)
Q Consensus 126 ~~~~~va~~~~~~~iP~Is~~a~~~~ls~-------~~~p-~~~r~~p~d~~~~~ai~~~l~~~~------w-~~v~ii~ 190 (945)
.....+...+...+||+|.+....+.... ..|+ ++..+..++...+..+++++...+ - ++|+++.
T Consensus 73 ~~~~~~~~~~~~~giPvV~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~g~~~~~g~~~~i~~i~ 152 (350)
T 3h75_A 73 YVAPQILRLSQGSGIKLFIVNSPLTLDQRELIGQSRQNYSDWIGSMVGDDEEAGYRMLKELLHKLGPVPAGHGIELLAFS 152 (350)
T ss_dssp SHHHHHHHHHTTSCCEEEEEESCCCTTTC------------CEEEEECCHHHHHHHHHHHHHHHHCCCCSSCCEEEEEEE
T ss_pred hhHHHHHHHHHhCCCcEEEEcCCCChHHHhhhcCCchhccceeeeecCChHHHHHHHHHHHHHHhhhhcCCCCceEEEEe
Confidence 44555667788899999987655443220 1122 256667777777888888776555 4 8999987
Q ss_pred EeC--CcccchHHHHHHHHhhcCc-EEEEeecCCCCCChHHHHHHHHhhccC--CceEEEEEcChhhHHHHHHHHHhCCC
Q 002267 191 VDD--DYGRNGISVLGDALSKKRA-KISYKAPFSPGASRSAINSLLVGANLM--ESRVFVVHVNPDTGLTIFSVAKSLGM 265 (945)
Q Consensus 191 ~d~--~~g~~~~~~l~~~l~~~g~-~v~~~~~~~~~~~~~d~~~~l~~l~~~--~~~vivl~~~~~~~~~~~~~a~~~g~ 265 (945)
.+. .....-.+.+.+++++.|. ++... +....+.+.....+.++... ++++| ++.+...+..+++++++.|+
T Consensus 153 g~~~~~~~~~R~~Gf~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~L~~~~~~~aI-~~~~d~~a~g~~~al~~~G~ 229 (350)
T 3h75_A 153 GLKVTPAAQLRERGLRRALAEHPQVHLRQL--VYGEWNRERAYRQAQQLLKRYPKTQLV-WSANDEMALGAMQAARELGR 229 (350)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHCTTEEEEEE--EECTTCHHHHHHHHHHHHHHCTTEEEE-EESSHHHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCeEEEEE--eeCCCcHHHHHHHHHHHHHhCCCcCEE-EECChHHHHHHHHHHHHcCC
Confidence 542 2334457889999999986 33222 22223444444455554433 34544 34667788899999999998
Q ss_pred CCCC-eEEEEeC
Q 002267 266 TAGS-YVWIATD 276 (945)
Q Consensus 266 ~~~~-~~wi~~~ 276 (945)
..++ ...++.|
T Consensus 230 ~vP~di~vvg~d 241 (350)
T 3h75_A 230 KPGTDLLFSGVN 241 (350)
T ss_dssp CBTTTBEEEEES
T ss_pred CCCCCeEEEecC
Confidence 7554 4444443
No 101
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=98.04 E-value=9.7e-05 Score=78.67 Aligned_cols=211 Identities=9% Similarity=0.009 Sum_probs=132.3
Q ss_pred CceEEEEEEeccC--CccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEe-cCCCChHHHHHHHHHHHhcCcEEEEc-cC
Q 002267 48 PSSVRIGALFTYD--SVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIR-DTNCSGFVGTMEALQLMENEVVAAIG-PQ 123 (945)
Q Consensus 48 ~~~i~IG~l~~l~--~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~-D~~~~~~~a~~~a~~li~~~v~aiiG-p~ 123 (945)
....+||+++|-. ..+-.....+++-+.++.+ |+.+.+... ++..++..-.+....++.+++.+||- |.
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~-------g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~ 78 (304)
T 3gbv_A 6 NKKYTFACLLPKHLEGEYWTDVQKGIREAVTTYS-------DFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPT 78 (304)
T ss_dssp -CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHTG-------GGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCS
T ss_pred CCcceEEEEecCCCCchHHHHHHHHHHHHHHHHH-------hCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCC
Confidence 4568999999874 3444456677776666641 456666654 44567777667777788888887764 44
Q ss_pred ChhHHHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHcCC--eEEEEEEEeC------Cc
Q 002267 124 SSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGW--REVIAIFVDD------DY 195 (945)
Q Consensus 124 ~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~w--~~v~ii~~d~------~~ 195 (945)
.+.........+...++|+|......+.. +.+-.+..++...+..+++++...|. ++|++|..+. ..
T Consensus 79 ~~~~~~~~~~~~~~~~iPvV~~~~~~~~~-----~~~~~V~~D~~~~g~~a~~~l~~~g~~~~~i~~i~~~~~g~~~~~~ 153 (304)
T 3gbv_A 79 VPQYTKGFTDALNELGIPYIYIDSQIKDA-----PPLAFFGQNSHQSGYFAARMLMLLAVNDREIVIFRKIHEGVIGSNQ 153 (304)
T ss_dssp SGGGTHHHHHHHHHHTCCEEEESSCCTTS-----CCSEEEECCHHHHHHHHHHHHHHHSTTCSEEEEEEEEBTTBCCCHH
T ss_pred ChHHHHHHHHHHHHCCCeEEEEeCCCCCC-----CceEEEecChHHHHHHHHHHHHHHhCCCCeEEEEEecccCCccchh
Confidence 44333445566677799999875433211 12345567777778888888877777 9999998431 23
Q ss_pred ccchHHHHHHHHhhcCcE--EEEee--cCCCCCChHHHHHHHHhhccCCceEEEEEcChhhHHHHHHHHHhCCCCCCCeE
Q 002267 196 GRNGISVLGDALSKKRAK--ISYKA--PFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYV 271 (945)
Q Consensus 196 g~~~~~~l~~~l~~~g~~--v~~~~--~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~~~~~~~~~~a~~~g~~~~~~~ 271 (945)
...-.+.+.+++++.|.. +.... ..........+...+++ ..++++|+..... +..++++++++|+ ++..
T Consensus 154 ~~~R~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~ai~~~~d~--a~g~~~al~~~g~--~di~ 227 (304)
T 3gbv_A 154 QESREIGFRQYMQEHHPACNILELNLHADLNIEDSRMLDDFFRE--HPDVKHGITFNSK--VYIIGEYLQQRRK--SDFS 227 (304)
T ss_dssp HHHHHHHHHHHHHHHCTTSEEEEEEEESSCSSCHHHHHHHHHHH--CTTCCEEEESSSC--THHHHHHHHHTTC--CSCE
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEeeecCCCHHHHHHHHHHHHHh--CCCeEEEEEcCcc--hHHHHHHHHHcCC--CCcE
Confidence 345678899999988764 33221 12211122223333332 2357887765544 7789999999998 4555
Q ss_pred EEEeC
Q 002267 272 WIATD 276 (945)
Q Consensus 272 wi~~~ 276 (945)
.++.|
T Consensus 228 vig~d 232 (304)
T 3gbv_A 228 LIGYD 232 (304)
T ss_dssp EEEES
T ss_pred EEEeC
Confidence 55554
No 102
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=98.03 E-value=3.6e-05 Score=81.55 Aligned_cols=209 Identities=14% Similarity=0.052 Sum_probs=118.9
Q ss_pred ceEEEEEEecc-CCccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChhH
Q 002267 49 SSVRIGALFTY-DSVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAIGPQSSGI 127 (945)
Q Consensus 49 ~~i~IG~l~~l-~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~ 127 (945)
.+.+||++.|- +..+-.....+++.++++. |+++.+. .++..++....+....++.+++.+||.......
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~-~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 77 (290)
T 3clk_A 7 SSNVIAAVVSSVRTNFAQQILDGIQEEAHKN--------GYNLIIV-YSGSADPEEQKHALLTAIERPVMGILLLSIALT 77 (290)
T ss_dssp -CCEEEEECCCCSSSHHHHHHHHHHHHHHTT--------TCEEEEE-C----------CHHHHHHSSCCSEEEEESCC--
T ss_pred cCCEEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCeEEEE-eCCCCCHHHHHHHHHHHHhcCCCEEEEecccCC
Confidence 45789999984 3333344556666555542 5666543 155556555555666777778887775332222
Q ss_pred HHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEe--CCcccchHHHHHH
Q 002267 128 AHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVD--DDYGRNGISVLGD 205 (945)
Q Consensus 128 ~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d--~~~g~~~~~~l~~ 205 (945)
. .....+...++|+|......+. + +..+..++...+..+++++...|.++|++|..+ ......-.+.+.+
T Consensus 78 ~-~~~~~l~~~~iPvV~~~~~~~~------~-~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~ 149 (290)
T 3clk_A 78 D-DNLQLLQSSDVPYCFLSMGFDD------D-RPFISSDDEDIGYQATNLLINEGHRQIGIAGIDQYPYTGRKRLAGYKK 149 (290)
T ss_dssp ---CHHHHHCC--CEEEESCC--C------C-SCEEECCHHHHHHHHHHHHHTTTCCSEEEESCCCCTTTHHHHHHHHHH
T ss_pred H-HHHHHHHhCCCCEEEEcCCCCC------C-CCEEEeChHHHHHHHHHHHHHcCCCEEEEEeCCCCCcchHHHHHHHHH
Confidence 2 2334456689999986543221 2 334566777777888888877799999999754 3344566788999
Q ss_pred HHhhcCcEEEEeecCCCCCChHHHHHHHHhhcc-CCceEEEEEcChhhHHHHHHHHHhCCCCCCC-eEEEEe
Q 002267 206 ALSKKRAKISYKAPFSPGASRSAINSLLVGANL-MESRVFVVHVNPDTGLTIFSVAKSLGMTAGS-YVWIAT 275 (945)
Q Consensus 206 ~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~-~~~~vivl~~~~~~~~~~~~~a~~~g~~~~~-~~wi~~ 275 (945)
++++.|+++.....+....+..+-...+.++.+ .++++|+. .+...+..+++++++.|+..++ ...++.
T Consensus 150 ~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di~vvg~ 220 (290)
T 3clk_A 150 ALKEANIAINQEWIKPGDYSYTSGEQAMKAFGKNTDLTGIIA-ASDMTAIGILNQASSFGIEVPKDLSIVSI 220 (290)
T ss_dssp HHHHTTCCCCGGGEECCCSSHHHHHHHHHHHCTTCCCSEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEEEEE
T ss_pred HHHHcCCCCCcceEEcCCCChhhHHHHHHHHhccCCCcEEEE-CCcHHHHHHHHHHHHcCCCCCCceEEEEe
Confidence 999999765321111111233444445555543 45677654 5566788899999999987544 334443
No 103
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=98.02 E-value=0.00029 Score=75.01 Aligned_cols=211 Identities=9% Similarity=-0.025 Sum_probs=135.4
Q ss_pred eEEEEEEeccC-CccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-cCChhH
Q 002267 50 SVRIGALFTYD-SVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAIG-PQSSGI 127 (945)
Q Consensus 50 ~i~IG~l~~l~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiG-p~~s~~ 127 (945)
.-+||++.+.. ..+-.....+++.++++. |+++.+. .++..++..-.+....++.+++.+||- |.....
T Consensus 4 ~~~I~~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~-~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~ 74 (305)
T 3g1w_A 4 NETYMMITFQSGMDYWKRCLKGFEDAAQAL--------NVTVEYR-GAAQYDIQEQITVLEQAIAKNPAGIAISAIDPVE 74 (305)
T ss_dssp -CEEEEEESSTTSTHHHHHHHHHHHHHHHH--------TCEEEEE-ECSSSCHHHHHHHHHHHHHHCCSEEEECCSSTTT
T ss_pred CceEEEEEccCCChHHHHHHHHHHHHHHHc--------CCEEEEe-CCCcCCHHHHHHHHHHHHHhCCCEEEEcCCCHHH
Confidence 35788888764 344446677888777774 5666543 467778888777788888888887763 444433
Q ss_pred HHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHc--CCeEEEEEEEeCC-cccchHHHHH
Q 002267 128 AHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYY--GWREVIAIFVDDD-YGRNGISVLG 204 (945)
Q Consensus 128 ~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~--~w~~v~ii~~d~~-~g~~~~~~l~ 204 (945)
.......+...++|+|.+....+. . +.+..+..++...+..+++++... |-++|+++..... ....-.+.+.
T Consensus 75 ~~~~~~~~~~~~iPvV~~~~~~~~---~--~~~~~V~~d~~~~g~~~~~~l~~~~~g~~~i~~i~~~~~~~~~~R~~gf~ 149 (305)
T 3g1w_A 75 LTDTINKAVDAGIPIVLFDSGAPD---S--HAHSFLGTNNYNAGMNAAYKMAELLDGEGEVAVITLPNQLNHQERTTGFK 149 (305)
T ss_dssp THHHHHHHHHTTCCEEEESSCCTT---S--CCSCEEECCHHHHHHHHHHHHHHHTTTCEEEEEEECTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCcEEEECCCCCC---C--ceeEEECcCHHHHHHHHHHHHHHHhCCCcEEEEEeCCCcccHHHHHHHHH
Confidence 334455666789999987554321 1 223445677777788888888777 9999999985422 2234467888
Q ss_pred HHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccC--CceEEEEEcChhhHHHHHHHHHhCCCCCCCeEEEEeC
Q 002267 205 DALSKKRAKISYKAPFSPGASRSAINSLLVGANLM--ESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIATD 276 (945)
Q Consensus 205 ~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~--~~~vivl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~ 276 (945)
+++++.|..+..........+.......+.++.+. ++++|+ +.+...+..++++++++|+. .+...++.|
T Consensus 150 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~-~di~vig~d 221 (305)
T 3g1w_A 150 ETLEAEFPAIEVIAVEDGRGDSLHSRRVAHQLLEDYPNLAGIF-ATEANGGVGVGDAVRLESRA-GEIQIISFD 221 (305)
T ss_dssp HHHHHHCTTEEEEEEEECTTCHHHHHHHHHHHHHHCTTEEEEE-ESSHHHHHHHHHHHHHTTCT-TTSEEEEES
T ss_pred HHHHhhCCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCceEEE-ECCCcchhhHHHHHHhcCCC-CCeEEEEeC
Confidence 99988876543322222223444444455554433 455544 46677788999999999987 455555554
No 104
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=98.02 E-value=0.00011 Score=77.09 Aligned_cols=205 Identities=10% Similarity=0.018 Sum_probs=127.2
Q ss_pred eEEEEEEeccC-CccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-cCChhH
Q 002267 50 SVRIGALFTYD-SVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAIG-PQSSGI 127 (945)
Q Consensus 50 ~i~IG~l~~l~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiG-p~~s~~ 127 (945)
.-+||++.|.. ..+-.....|++.++++. |+++.+ .++..++....+....++.++|.+||- |....
T Consensus 3 s~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgii~~~~~~~- 71 (275)
T 3d8u_A 3 AYSIALIIPSLFEKACAHFLPSFQQALNKA--------GYQLLL--GYSDYSIEQEEKLLSTFLESRPAGVVLFGSEHS- 71 (275)
T ss_dssp -CEEEEEESCSSCHHHHHHHHHHHHHHHHT--------SCEECC--EECTTCHHHHHHHHHHHHTSCCCCEEEESSCCC-
T ss_pred ceEEEEEeCCCccccHHHHHHHHHHHHHHC--------CCEEEE--EcCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC-
Confidence 35799999853 333345666766666652 555544 456667776666677777777776553 22222
Q ss_pred HHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEeC--CcccchHHHHHH
Q 002267 128 AHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDD--DYGRNGISVLGD 205 (945)
Q Consensus 128 ~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~--~~g~~~~~~l~~ 205 (945)
. .....+...++|+|......+ + +.+..+..++...+..+++++...|.++|++|..+. .....-.+.+.+
T Consensus 72 ~-~~~~~l~~~~iPvV~~~~~~~---~---~~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~ 144 (275)
T 3d8u_A 72 Q-RTHQLLEASNTPVLEIAELSS---K---ASYLNIGVDHFEVGKACTRHLIEQGFKNVGFIGARGNHSTLQRQLHGWQS 144 (275)
T ss_dssp H-HHHHHHHHHTCCEEEESSSCS---S---SSSEEECBCHHHHHHHHHHHHHTTTCCCEEEEECSCSSHHHHHHHHHHHH
T ss_pred H-HHHHHHHhCCCCEEEEeeccC---C---CCCCEEEEChHHHHHHHHHHHHHCCCCeEEEEcCCCCCchHHHHHHHHHH
Confidence 1 233445567999998644322 1 233456667777777788888777999999998653 234456788999
Q ss_pred HHhhcCcEEEEeecCCCCCChHHHHHHHHhhccC--CceEEEEEcChhhHHHHHHHHHhCCCCCCCeEEE
Q 002267 206 ALSKKRAKISYKAPFSPGASRSAINSLLVGANLM--ESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWI 273 (945)
Q Consensus 206 ~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~--~~~vivl~~~~~~~~~~~~~a~~~g~~~~~~~wi 273 (945)
++++.|+.+.....+....+..+....+.++.+. ++++|+ +.+...+..+++++++.|+..++-+.+
T Consensus 145 ~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~v 213 (275)
T 3d8u_A 145 AMIENYLTPDHFLTTHEAPSSQLGAEGLAKLLLRDSSLNALV-CSHEEIAIGALFECHRRVLKVPTDIAI 213 (275)
T ss_dssp HHHHTTCCCCCEEECSSCCCHHHHHHHHHHHHTTCTTCCEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHcCCCCCccEEEeCCCChhHHHHHHHHHHhCCCCCCEEE-EcCcHHHHHHHHHHHHcCCCCCCceEE
Confidence 9999997543222222123444444455554433 467766 456667888999999999875543333
No 105
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=98.00 E-value=0.00063 Score=71.52 Aligned_cols=205 Identities=12% Similarity=0.081 Sum_probs=127.1
Q ss_pred EEEEEeccC-CccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-cCChhHHH
Q 002267 52 RIGALFTYD-SVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAIG-PQSSGIAH 129 (945)
Q Consensus 52 ~IG~l~~l~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiG-p~~s~~~~ 129 (945)
+||++.|-. ..+......|++.++++. |+.+. +.++..++..-.+....+++++|.+||- |..+....
T Consensus 3 ~Igvi~~~~~~~f~~~~~~gi~~~~~~~--------g~~~~--~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~ 72 (283)
T 2ioy_A 3 TIGLVISTLNNPFFVTLKNGAEEKAKEL--------GYKII--VEDSQNDSSKELSNVEDLIQQKVDVLLINPVDSDAVV 72 (283)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHH--------TCEEE--EEECTTCHHHHHHHHHHHHHTTCSEEEECCSSTTTTH
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHHHhc--------CcEEE--EecCCCCHHHHHHHHHHHHHcCCCEEEEeCCchhhhH
Confidence 689998753 444446677777777764 55554 4567777777667777788888887663 44333222
Q ss_pred HHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHc-C-CeEEEEEEEeCC--cccchHHHHHH
Q 002267 130 VISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYY-G-WREVIAIFVDDD--YGRNGISVLGD 205 (945)
Q Consensus 130 ~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~-~-w~~v~ii~~d~~--~g~~~~~~l~~ 205 (945)
.....+...++|+|.+....+ +. +.+..+..++...+..+++++... | -++|++|..... ....-.+.+.+
T Consensus 73 ~~~~~~~~~~iPvV~~~~~~~---~~--~~~~~V~~D~~~~g~~a~~~L~~~~gg~~~I~~i~g~~~~~~~~~R~~Gf~~ 147 (283)
T 2ioy_A 73 TAIKEANSKNIPVITIDRSAN---GG--DVVCHIASDNVKGGEMAAEFIAKALKGKGNVVELEGIPGASAARDRGKGFDE 147 (283)
T ss_dssp HHHHHHHHTTCCEEEESSCCS---SS--CCSEEEEECHHHHHHHHHHHHHHHTTTCEEEEEEECCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCeEEEecCCCC---Cc--ceeEEEecChHHHHHHHHHHHHHHcCCCceEEEEECCCCCccHHHHHHHHHH
Confidence 334456678999998754221 11 122334556666677777876554 5 899999985432 23445678899
Q ss_pred HHhhc-CcEEEEeecCCCCCChHHHHHHHHhhccC--CceEEEEEcChhhHHHHHHHHHhCCCCCCCeEEEEeC
Q 002267 206 ALSKK-RAKISYKAPFSPGASRSAINSLLVGANLM--ESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIATD 276 (945)
Q Consensus 206 ~l~~~-g~~v~~~~~~~~~~~~~d~~~~l~~l~~~--~~~vivl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~ 276 (945)
++++. |+++.....-. .+..+-...++++.+. ++++| ++.+...+..++++++++|+ ++...++.|
T Consensus 148 al~~~~~~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai-~~~nD~~A~g~~~al~~~G~--~di~viG~D 216 (283)
T 2ioy_A 148 AIAKYPDIKIVAKQAAD--FDRSKGLSVMENILQAQPKIDAV-FAQNDEMALGAIKAIEAANR--QGIIVVGFD 216 (283)
T ss_dssp HHTTCTTEEEEEEEECT--TCHHHHHHHHHHHHHHCSCCCEE-EESSHHHHHHHHHHHHHTTC--CCCEEEEEE
T ss_pred HHHhCCCCEEEeeccCC--CCHHHHHHHHHHHHHhCCCccEE-EECCchHHHHHHHHHHHCCC--CCcEEEEeC
Confidence 99988 88765432211 2344434444544332 45555 45666778899999999998 444555544
No 106
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=97.99 E-value=0.00027 Score=74.74 Aligned_cols=209 Identities=9% Similarity=0.016 Sum_probs=133.8
Q ss_pred CceEEEEEEeccC-CccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-cCCh
Q 002267 48 PSSVRIGALFTYD-SVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAIG-PQSS 125 (945)
Q Consensus 48 ~~~i~IG~l~~l~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiG-p~~s 125 (945)
...-+||+++|-. ..+-.....+++-++++. |+++. +.++..++..-.+....++++++.+||- |...
T Consensus 6 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~ 75 (293)
T 3l6u_A 6 PKRNIVGFTIVNDKHEFAQRLINAFKAEAKAN--------KYEAL--VATSQNSRISEREQILEFVHLKVDAIFITTLDD 75 (293)
T ss_dssp ---CEEEEEESCSCSHHHHHHHHHHHHHHHHT--------TCEEE--EEECSSCHHHHHHHHHHHHHTTCSEEEEECSCT
T ss_pred CCCcEEEEEEecCCcHHHHHHHHHHHHHHHHc--------CCEEE--EECCCCCHHHHHHHHHHHHHcCCCEEEEecCCh
Confidence 3467899999864 333345666776666653 55554 4566778887777888888888877664 3333
Q ss_pred hHHHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHH-c-CCe-----EEEEEEEeC--Ccc
Q 002267 126 GIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEY-Y-GWR-----EVIAIFVDD--DYG 196 (945)
Q Consensus 126 ~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~-~-~w~-----~v~ii~~d~--~~g 196 (945)
.........+...++|+|......+. .+.+..+..++...+..+++++.. + |-+ +|++|.... ...
T Consensus 76 ~~~~~~~~~~~~~~iPvV~~~~~~~~-----~~~~~~V~~D~~~~g~~~~~~l~~~~~g~~~~~~~~i~~i~g~~~~~~~ 150 (293)
T 3l6u_A 76 VYIGSAIEEAKKAGIPVFAIDRMIRS-----DAVVSSITSNNQMIGEQLASYIKNELIKQTGRSTGRIVEITGTANVYTT 150 (293)
T ss_dssp TTTHHHHHHHHHTTCCEEEESSCCCC-----TTCSEEEEECHHHHHHHHHHHHHHHHHHHHSCSCEEEEEEECSTTCHHH
T ss_pred HHHHHHHHHHHHcCCCEEEecCCCCC-----CcceeEEecCHHHHHHHHHHHHHHHhccCCCCCCceEEEEECCCCCchH
Confidence 33334455666779999987544331 123455667777778888887655 5 666 999997542 334
Q ss_pred cchHHHHHHHHhhc-CcEEEEeecCCCCCChHHHHHHHHhhccC--CceEEEEEcChhhHHHHHHHHHhCCCCCCCeEEE
Q 002267 197 RNGISVLGDALSKK-RAKISYKAPFSPGASRSAINSLLVGANLM--ESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWI 273 (945)
Q Consensus 197 ~~~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~d~~~~l~~l~~~--~~~vivl~~~~~~~~~~~~~a~~~g~~~~~~~wi 273 (945)
..-.+.+.+++++. |+++.....-. .+..+....+.++... ++++|+ +.+...+..++++++++|+. +...+
T Consensus 151 ~~R~~gf~~~l~~~~g~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~--di~vi 225 (293)
T 3l6u_A 151 NERHRGFLKGIENEPTLSIVDSVSGN--YDPVTSERVMRQVIDSGIPFDAVY-CHNDDIAMGVLEALKKAKIS--GKIVV 225 (293)
T ss_dssp HHHHHHHHHHHTTCTTEEEEEEEECT--TCHHHHHHHHHHHHHTTCCCSEEE-ESSHHHHHHHHHHHHHTTCC--CCEEE
T ss_pred HHHHHHHHHHHHhCCCcEEeeeccCC--CCHHHHHHHHHHHHHhCCCCCEEE-ECCchHHHHHHHHHHhCCCC--CeEEE
Confidence 45578899999999 98876543222 3444544555555443 456654 46677788999999999985 44444
Q ss_pred EeC
Q 002267 274 ATD 276 (945)
Q Consensus 274 ~~~ 276 (945)
+.|
T Consensus 226 g~d 228 (293)
T 3l6u_A 226 GID 228 (293)
T ss_dssp EEE
T ss_pred Eec
Confidence 443
No 107
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=97.99 E-value=6e-05 Score=79.84 Aligned_cols=210 Identities=8% Similarity=-0.094 Sum_probs=127.3
Q ss_pred ceEEEEEEeccC-CccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHH---HHHHHHhcCcEEEEccCC
Q 002267 49 SSVRIGALFTYD-SVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTM---EALQLMENEVVAAIGPQS 124 (945)
Q Consensus 49 ~~i~IG~l~~l~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~---~a~~li~~~v~aiiGp~~ 124 (945)
...+||++.|.. ..+......|++.++++. |+++.+ .++..++....+ ....+++++|.+||-...
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 76 (290)
T 2rgy_A 7 QLGIIGLFVPTFFGSYYGTILKQTDLELRAV--------HRHVVV--ATGCGESTPREQALEAVRFLIGRDCDGVVVISH 76 (290)
T ss_dssp -CCEEEEECSCSCSHHHHHHHHHHHHHHHHT--------TCEEEE--ECCCSSSCHHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CCCeEEEEeCCCCCchHHHHHHHHHHHHHHC--------CCEEEE--EeCCCchhhhhhHHHHHHHHHhcCccEEEEecC
Confidence 456899999853 334445667777666652 566654 455555555455 566677778888775322
Q ss_pred hhHHHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEeC--CcccchHHH
Q 002267 125 SGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDD--DYGRNGISV 202 (945)
Q Consensus 125 s~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~--~~g~~~~~~ 202 (945)
.... .....+...++|+|......+. +.+..+..++..-+..+++++...|.++|++|..+. .....-.+.
T Consensus 77 ~~~~-~~~~~l~~~~iPvV~~~~~~~~------~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~G 149 (290)
T 2rgy_A 77 DLHD-EDLDELHRMHPKMVFLNRAFDA------LPDASFCPDHRRGGELAAATLIEHGHRKLAVISGPFTASDNVERLDG 149 (290)
T ss_dssp SSCH-HHHHHHHHHCSSEEEESSCCTT------SGGGEECCCHHHHHHHHHHHHHHTTCCSEEEEESCTTCHHHHHHHHH
T ss_pred CCCH-HHHHHHhhcCCCEEEEccccCC------CCCCEEEeCcHHHHHHHHHHHHHCCCceEEEEeCCCCCccHHHHHHH
Confidence 2222 2334445579999987543221 122345566666777788888778999999998653 234455778
Q ss_pred HHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhcc--CCceEEEEEcChhhHHHHHHHHHhCCCCCCC-eEEEEeC
Q 002267 203 LGDALSKKRAKISYKAPFSPGASRSAINSLLVGANL--MESRVFVVHVNPDTGLTIFSVAKSLGMTAGS-YVWIATD 276 (945)
Q Consensus 203 l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vivl~~~~~~~~~~~~~a~~~g~~~~~-~~wi~~~ 276 (945)
+.+++++.|+++.....+....+..+-...++++.+ .++++|+ +.+...+..+++++++.|+..++ ...++.|
T Consensus 150 f~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~G~~vP~di~vvg~D 225 (290)
T 2rgy_A 150 FFDELARHGIARDSVPLIESDFSPEGGYAATCQLLESKAPFTGLF-CANDTMAVSALARFQQLGISVPGDVSVIGYD 225 (290)
T ss_dssp HHHHHHTTTCCGGGSCEEECCSSHHHHHHHHHHHHHHTCCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEEEEE
T ss_pred HHHHHHHcCCCCCcccEEecCCChhHHHHHHHHHHhCCCCCcEEE-ECCcHHHHHHHHHHHHcCCCCCCceEEEEeC
Confidence 999999998754221111111233333334444332 3577776 46677788999999999987544 4444443
No 108
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=97.98 E-value=0.00011 Score=79.47 Aligned_cols=211 Identities=10% Similarity=0.003 Sum_probs=130.0
Q ss_pred CceEEEEEEeccC-CccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChh
Q 002267 48 PSSVRIGALFTYD-SVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAIGPQSSG 126 (945)
Q Consensus 48 ~~~i~IG~l~~l~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~ 126 (945)
....+||++.|.. ..+......|++.++++. |+.+.+ .++..++....+....++++++.+||-.....
T Consensus 61 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~ 130 (332)
T 2o20_A 61 KRTTTVGVILPTITSTYFAAITRGVDDIASMY--------KYNMIL--ANSDNDVEKEEKVLETFLSKQVDGIVYMGSSL 130 (332)
T ss_dssp -CCCEEEEEESCTTCHHHHHHHHHHHHHHHHT--------TCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECSSCC
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHc--------CCEEEE--EECCCChHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 3467899999853 344445667777666652 566654 46666776666667777778888877533221
Q ss_pred HHHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEeC--CcccchHHHHH
Q 002267 127 IAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDD--DYGRNGISVLG 204 (945)
Q Consensus 127 ~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~--~~g~~~~~~l~ 204 (945)
.... ...+...++|+|......+ + +.+..+..++..-+..+++++...|.++|++|..+. .....-.+.+.
T Consensus 131 ~~~~-~~~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~ 203 (332)
T 2o20_A 131 DEKI-RTSLKNSRTPVVLVGTIDG---D---KEIPSVNIDYHLAAYQSTKKLIDSGNKKIAYIMGSLKDVENTERMVGYQ 203 (332)
T ss_dssp CHHH-HHHHHHHCCCEEEESCCCT---T---SCSCEEECCHHHHHHHHHHHHHHTTCSSEEEECSCTTSHHHHHHHHHHH
T ss_pred CHHH-HHHHHhCCCCEEEEccccC---C---CCCCEEEeChHHHHHHHHHHHHHCCCCeEEEEeCCcccccHHHHHHHHH
Confidence 1222 3334467999998754322 1 122334566666677788888778999999998553 23445578899
Q ss_pred HHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcChhhHHHHHHHHHhCCCCCCCeE-EEEeC
Q 002267 205 DALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYV-WIATD 276 (945)
Q Consensus 205 ~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~~~~~~~~~~a~~~g~~~~~~~-wi~~~ 276 (945)
+++++.|+.+.....+....+..+-...+.++.+.++++|+. .+...+..+++++++.|+..++-+ .++.|
T Consensus 204 ~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ai~~-~~d~~A~g~~~al~~~G~~vP~disvig~D 275 (332)
T 2o20_A 204 EALLEANIEFDENLVFEGNYSYEQGKALAERLLERGATSAVV-SHDTVAVGLLSAMMDKGVKVPEDFEIISGA 275 (332)
T ss_dssp HHHHHTTCCCCGGGEECSCCSHHHHHHHHHHHHHTTCCEEEE-SCHHHHHHHHHHHHHTTCCTTTTCEEEESS
T ss_pred HHHHHcCCCCChhhEEeCCCCHHHHHHHHHHHhccCCCEEEE-CChHHHHHHHHHHHHcCCCCccCEEEEEeC
Confidence 999999976542111121123333333444433237888765 566778889999999998755433 44433
No 109
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=97.98 E-value=6e-05 Score=81.61 Aligned_cols=211 Identities=7% Similarity=-0.024 Sum_probs=129.8
Q ss_pred CceEEEEEEecc-CCccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChh
Q 002267 48 PSSVRIGALFTY-DSVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAIGPQSSG 126 (945)
Q Consensus 48 ~~~i~IG~l~~l-~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~ 126 (945)
....+||++.|. +..+......|++.++++. |+.+.+ .++..++....+....++.+++.+||-.....
T Consensus 58 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~ 127 (332)
T 2hsg_A 58 KKTTTVGVIIPDISNIFYAELARGIEDIATMY--------KYNIIL--SNSDQNQDKELHLLNNMLGKQVDGIIFMSGNV 127 (332)
T ss_dssp C-CCEEEEEEC--CCSHHHHHHHHHHHHHHHH--------TCEEEE--EECCSHHHHHHHHHHHTSCCSSCCEEECCSSC
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHc--------CCEEEE--EeCCCChHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 346789999985 3444456677777777663 566554 45656666555566666677888776533222
Q ss_pred HHHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEeC---CcccchHHHH
Q 002267 127 IAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDD---DYGRNGISVL 203 (945)
Q Consensus 127 ~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~---~~g~~~~~~l 203 (945)
.. .....+...++|+|......+ + +.+.....++..-+..+++++...|.++|++|..+. .....-.+.+
T Consensus 128 ~~-~~~~~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf 200 (332)
T 2hsg_A 128 TE-EHVEELKKSPVPVVLAASIES---T---NQIPSVTIDYEQAAFDAVQSLIDSGHKNIAFVSGTLEEPINHAKKVKGY 200 (332)
T ss_dssp CH-HHHHHHTTSSSCEEEESCCCS---C---TTSCEEEECHHHHHHHHHHHHHTTTCSCEEEEESCTTSHHHHTTHHHHH
T ss_pred CH-HHHHHHHhCCCCEEEEccccC---C---CCCCEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCcccCccHHHHHHHH
Confidence 22 233445568999998754322 1 122334556666677778888777999999998653 2345667889
Q ss_pred HHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccC--CceEEEEEcChhhHHHHHHHHHhCCCCCCC-eEEEEeC
Q 002267 204 GDALSKKRAKISYKAPFSPGASRSAINSLLVGANLM--ESRVFVVHVNPDTGLTIFSVAKSLGMTAGS-YVWIATD 276 (945)
Q Consensus 204 ~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~--~~~vivl~~~~~~~~~~~~~a~~~g~~~~~-~~wi~~~ 276 (945)
.+++++.|+.+.....+....+..+-...+.++.+. .+++|+ +.+...+..+++++++.|+..++ ...++.|
T Consensus 201 ~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP~disvvg~D 275 (332)
T 2hsg_A 201 KRALTESGLPVRDSYIVEGDYTYDSGIEAVEKLLEEDEKPTAIF-VGTDEMALGVIHGAQDRGLNVPNDLEIIGFD 275 (332)
T ss_dssp HHHHHTTTCCCCGGGEEECCSSHHHHHHHHHHHHHSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCHHHHCEEEEES
T ss_pred HHHHHHcCCCCChheEEeCCCCHHHHHHHHHHHHcCCCCCeEEE-ECChHHHHHHHHHHHHcCCCCCCCeEEEEEC
Confidence 999999997643211111112333334445554433 577776 46677788899999999987543 3344444
No 110
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=97.97 E-value=0.00011 Score=77.92 Aligned_cols=212 Identities=13% Similarity=0.089 Sum_probs=132.0
Q ss_pred CceEEEEEEecc------CCccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc
Q 002267 48 PSSVRIGALFTY------DSVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAIG 121 (945)
Q Consensus 48 ~~~i~IG~l~~l------~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiG 121 (945)
...-+||+++|. +..+-.....+++-++++. |+++. +.++..++..-......+.++++.+||-
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~~~~~~vdgiIi 75 (292)
T 3k4h_A 6 QTTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVE--------GYALY--MSTGETEEEIFNGVVKMVQGRQIGGIIL 75 (292)
T ss_dssp -CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHT--------TCEEE--ECCCCSHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHc--------CCEEE--EEeCCCCHHHHHHHHHHHHcCCCCEEEE
Confidence 346789999997 2333445666666666553 55554 4566556555555555666678888764
Q ss_pred cCChhHHHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEeCC--cccch
Q 002267 122 PQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDD--YGRNG 199 (945)
Q Consensus 122 p~~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~ 199 (945)
...... ......+...++|+|......+.. +.+..+..++...+..+++++...|-++|+++..+.. ....-
T Consensus 76 ~~~~~~-~~~~~~l~~~~iPvV~~~~~~~~~-----~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R 149 (292)
T 3k4h_A 76 LYSREN-DRIIQYLHEQNFPFVLIGKPYDRK-----DEITYVDNDNYTAAREVAEYLISLGHKQIAFIGGGSDLLVTRDR 149 (292)
T ss_dssp SCCBTT-CHHHHHHHHTTCCEEEESCCSSCT-----TTSCEEECCHHHHHHHHHHHHHHTTCCCEEEEESCTTBHHHHHH
T ss_pred eCCCCC-hHHHHHHHHCCCCEEEECCCCCCC-----CCCCEEEECcHHHHHHHHHHHHHCCCceEEEEeCcccchhHHHH
Confidence 222221 234556677899999865433211 1134456677777888888888889999999985432 33455
Q ss_pred HHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccC--CceEEEEEcChhhHHHHHHHHHhCCCCCCC-eEEEEeC
Q 002267 200 ISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLM--ESRVFVVHVNPDTGLTIFSVAKSLGMTAGS-YVWIATD 276 (945)
Q Consensus 200 ~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~--~~~vivl~~~~~~~~~~~~~a~~~g~~~~~-~~wi~~~ 276 (945)
.+.+.+++++.|+.+.....+....+..+....+.++.+. ++++|+ +.+...+..++++++++|+..++ ...++.|
T Consensus 150 ~~gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vig~d 228 (292)
T 3k4h_A 150 LAGMSDALKLADIVLPKEYILHFDFSRESGQQAVEELMGLQQPPTAIM-ATDDLIGLGVLSALSKKGFVVPKDVSIVSFN 228 (292)
T ss_dssp HHHHHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEEEES
T ss_pred HHHHHHHHHHcCCCCChheEEecCCCHHHHHHHHHHHHcCCCCCcEEE-EcChHHHHHHHHHHHHhCCCCCCeEEEEEec
Confidence 7889999999997653221111123444445555555444 566665 56677788999999999987544 3344433
No 111
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=97.96 E-value=6.8e-05 Score=79.28 Aligned_cols=209 Identities=12% Similarity=0.066 Sum_probs=127.6
Q ss_pred eEEEEEEecc-----CCccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCC
Q 002267 50 SVRIGALFTY-----DSVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAIGPQS 124 (945)
Q Consensus 50 ~i~IG~l~~l-----~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~ 124 (945)
.-+||++.|. +..+-.....|++.++++. |+++.+ .++..++....+....+++++|.+||-...
T Consensus 4 s~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 73 (287)
T 3bbl_A 4 SFMIGYSWTQTEPGQVNHILDQFLSSMVREAGAV--------NYFVLP--FPFSEDRSQIDIYRDLIRSGNVDGFVLSSI 73 (287)
T ss_dssp CCEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHT--------TCEEEE--CCCCSSTTCCHHHHHHHHTTCCSEEEECSC
T ss_pred eeEEEEEecccccccCChhHHHHHHHHHHHHHHc--------CCEEEE--EeCCCchHHHHHHHHHHHcCCCCEEEEeec
Confidence 4579999985 4444445667777666652 566644 455555544445556677778888775322
Q ss_pred hhHHHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEeCC--cccchHHH
Q 002267 125 SGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDD--YGRNGISV 202 (945)
Q Consensus 125 s~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~ 202 (945)
.... .....+...++|+|......+ +. .+..+..++...+..+++++...|.++|++|..+.. ....-.+.
T Consensus 74 ~~~~-~~~~~l~~~~iPvV~~~~~~~---~~---~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~G 146 (287)
T 3bbl_A 74 NYND-PRVQFLLKQKFPFVAFGRSNP---DW---DFAWVDIDGTAGTRQAVEYLIGRGHRRIAILAWPEDSRVGNDRLQG 146 (287)
T ss_dssp CTTC-HHHHHHHHTTCCEEEESCCST---TC---CCCEEEECHHHHHHHHHHHHHHHTCCCEEEEECCTTCHHHHHHHHH
T ss_pred CCCc-HHHHHHHhcCCCEEEECCcCC---CC---CCCEEEeccHHHHHHHHHHHHHCCCCeEEEEeCCcccccHHHHHHH
Confidence 2111 233445567999998754322 11 223445666667777888877779999999985432 34456788
Q ss_pred HHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhcc-C---CceEEEEEcChhhHHHHHHHHHhCCCCCCC-eEEEEeC
Q 002267 203 LGDALSKKRAKISYKAPFSPGASRSAINSLLVGANL-M---ESRVFVVHVNPDTGLTIFSVAKSLGMTAGS-YVWIATD 276 (945)
Q Consensus 203 l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~-~---~~~vivl~~~~~~~~~~~~~a~~~g~~~~~-~~wi~~~ 276 (945)
+.+++++.|+.+.....+....+..+-...++++.+ . ++++|+. .+...+..+++++++.|+..++ ...++.|
T Consensus 147 f~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~~-~~d~~a~g~~~al~~~G~~vP~di~vig~d 224 (287)
T 3bbl_A 147 YLEAMQTAQLPIETGYILRGEGTFEVGRAMTLHLLDLSPERRPTAIMT-LNDTMAIGAMAAARERGLTIGTDLAIIGFD 224 (287)
T ss_dssp HHHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHTSCTTTSCSEEEE-SSHHHHHHHHHHHHHTTCCBTTTBEEEEES
T ss_pred HHHHHHHcCCCCChhhEEeCCCCHHHHHHHHHHHHhhCCCCCCcEEEE-CCcHHHHHHHHHHHHcCCCCCCCEEEEEEC
Confidence 999999999765321111111233444445555543 3 5677664 5667788899999999987543 4455544
No 112
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=97.93 E-value=7.1e-05 Score=80.93 Aligned_cols=202 Identities=15% Similarity=0.088 Sum_probs=126.8
Q ss_pred CceEEEEEEeccC-CccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChh
Q 002267 48 PSSVRIGALFTYD-SVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAIGPQSSG 126 (945)
Q Consensus 48 ~~~i~IG~l~~l~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~ 126 (945)
....+||++.|.. ..+......|++.++++. |+.+.+ .++..++....+....++.++|.+|| .....
T Consensus 58 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI-~~~~~ 126 (330)
T 3ctp_A 58 KNSKTIGLMVPNISNPFFNQMASVIEEYAKNK--------GYTLFL--CNTDDDKEKEKTYLEVLQSHRVAGII-ASRSQ 126 (330)
T ss_dssp --CCEEEEEESCTTSHHHHHHHHHHHHHHHHT--------TCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEE-EETCC
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHC--------CCEEEE--EeCCCChHHHHHHHHHHHhCCCCEEE-ECCCC
Confidence 3467899999853 334445667777666652 566654 46667777766677778888888888 43322
Q ss_pred HHHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEeCC--cccchHHHHH
Q 002267 127 IAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDD--YGRNGISVLG 204 (945)
Q Consensus 127 ~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~l~ 204 (945)
.. +.+...++|+|.+....+. ..+ .+..++...+..+++++...|.++|++|..+.. ....-.+.+.
T Consensus 127 ~~----~~l~~~~iPvV~~~~~~~~----~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~ 195 (330)
T 3ctp_A 127 CE----DEYANIDIPVVAFENHILD----NII---TISSDNYNGGRMAFDHLYEKGCRKILHIKGPEVFEATELRYKGFL 195 (330)
T ss_dssp CS----GGGTTCCSCEEEESSCCCT----TSC---EEEECHHHHHHHHHHHHHHTTCCSEEEEECCTTCHHHHHHHHHHH
T ss_pred CH----HHHHhcCCCEEEEeccCCC----CCC---EEEeCHHHHHHHHHHHHHHCCCCeEEEEeCCccCccHHHHHHHHH
Confidence 21 3355679999987543321 222 344566666677788887789999999986532 3455678899
Q ss_pred HHHhhcCcEEEEeecCCCCCChHHHHHHHHhhcc-CCceEEEEEcChhhHHHHHHHHHhCCCCCCCeEEE
Q 002267 205 DALSKKRAKISYKAPFSPGASRSAINSLLVGANL-MESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWI 273 (945)
Q Consensus 205 ~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~-~~~~vivl~~~~~~~~~~~~~a~~~g~~~~~~~wi 273 (945)
+++++.|+.+. ...+....+..+-...+.++.+ .++++|+. .+...+..+++++++.|+..++-+-+
T Consensus 196 ~al~~~g~~~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~ai~~-~~d~~A~g~~~al~~~G~~vP~disv 263 (330)
T 3ctp_A 196 DGARAKDLEID-FIEFQHDFQVKMLEEDINSMKDIVNYDGIFV-FNDIAAATVMRALKKRGVSIPQEVQI 263 (330)
T ss_dssp HHHHHTTCCCE-EEECSSSCCGGGGGCCCTTGGGGGGSSEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHHcCCCcc-eeEEcCCCCHHHHHHHHHHHhcCCCCcEEEE-CCHHHHHHHHHHHHHcCCCCCCCeEE
Confidence 99999998664 2222211222222222333333 35777664 55667888999999999876543333
No 113
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=97.93 E-value=0.00016 Score=78.50 Aligned_cols=212 Identities=11% Similarity=0.006 Sum_probs=135.7
Q ss_pred CceEEEEEEecc---CCccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCC
Q 002267 48 PSSVRIGALFTY---DSVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAIGPQS 124 (945)
Q Consensus 48 ~~~i~IG~l~~l---~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~ 124 (945)
...-+||+++|- +..+-.....+++.++++. |+.+. +.++..++..-.+....++.+++.+||-...
T Consensus 59 ~~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 128 (338)
T 3dbi_A 59 KSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEK--------GRQLL--LADGKHSAEEERQAIQYLLDLRCDAIMIYPR 128 (338)
T ss_dssp -CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHT--------TCEEE--EEECTTSHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred CCCCEEEEEecCCcccChhHHHHHHHHHHHHHHC--------CCEEE--EEeCCCChHHHHHHHHHHHhCCCCEEEEeCC
Confidence 346789999986 3333345566666666653 55554 4567777777777777788888888775333
Q ss_pred hhHHHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEe--CCcccchHHH
Q 002267 125 SGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVD--DDYGRNGISV 202 (945)
Q Consensus 125 s~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d--~~~g~~~~~~ 202 (945)
......+...+...++|+|......+. +.+..+..++..-+..+++.+...|.++|++|... ......-.+.
T Consensus 129 ~~~~~~~~~~~~~~~iPvV~~~~~~~~------~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~G 202 (338)
T 3dbi_A 129 FLSVDEIDDIIDAHSQPIMVLNRRLRK------NSSHSVWCDHKQTSFNAVAELINAGHQEIAFLTGSMDSPTSIERLAG 202 (338)
T ss_dssp SSCHHHHHHHHHHCSSCEEEESSCCSS------SGGGEECBCHHHHHHHHHHHHHHTTCCSEEEECCCTTCHHHHHHHHH
T ss_pred CCChHHHHHHHHcCCCCEEEEcCCCCC------CCCCEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCCCCccHHHHHHH
Confidence 323345667788889999986543321 11223556666677778888888899999999754 2234455788
Q ss_pred HHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhcc--CCceEEEEEcChhhHHHHHHHHHhCCCCCCC-eEEEEeC
Q 002267 203 LGDALSKKRAKISYKAPFSPGASRSAINSLLVGANL--MESRVFVVHVNPDTGLTIFSVAKSLGMTAGS-YVWIATD 276 (945)
Q Consensus 203 l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vivl~~~~~~~~~~~~~a~~~g~~~~~-~~wi~~~ 276 (945)
+.+++++.|+.+.....+....+..+-...+.++.+ .++++|+ +.+...+..++++++++|+..++ ...++.|
T Consensus 203 f~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP~di~vvg~D 278 (338)
T 3dbi_A 203 YKDALAQHGIALNEKLIANGKWTPASGAEGVEMLLERGAKFSALV-ASNDDMAIGAMKALHERGVAVPEQVSVIGFD 278 (338)
T ss_dssp HHHHHHHTTCCCCGGGEECCCSSHHHHHHHHHHHHHTTCCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEEEES
T ss_pred HHHHHHHCCCCCCcceEEeCCCCHHHHHHHHHHHHcCCCCCeEEE-ECChHHHHHHHHHHHHcCCCCCCCeEEEEEC
Confidence 999999999765422222222334444444455432 3567765 45667788999999999987654 4444444
No 114
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=97.91 E-value=0.00023 Score=77.30 Aligned_cols=208 Identities=7% Similarity=-0.007 Sum_probs=127.5
Q ss_pred CCceEEEEEEecc--CCccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCC--CChHHHHHHHHHHHhcCcEEEEcc
Q 002267 47 RPSSVRIGALFTY--DSVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTN--CSGFVGTMEALQLMENEVVAAIGP 122 (945)
Q Consensus 47 ~~~~i~IG~l~~l--~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~--~~~~~a~~~a~~li~~~v~aiiGp 122 (945)
.....+||++.|- +..+-.....+++.++++. |+++.+...++. .++..-.+....++.+++.+||-+
T Consensus 40 ~~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~ 111 (342)
T 1jx6_A 40 TQRPIKISVVYPGQQVSDYWVRNIASFEKRLYKL--------NINYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIFT 111 (342)
T ss_dssp CSSCEEEEEEECCCSSCCHHHHHHHHHHHHHHHT--------TCCEEEEEEECCTTCCHHHHHHHHHHHHHTTCSEEEEC
T ss_pred cCCceEEEEEecCCcccHHHHHHHHHHHHHHHHc--------CCeEEEEecCCCCccCHHHHHHHHHHHHhcCCCEEEEe
Confidence 4456889999985 4444345566666666553 566777765665 677766667777888888888765
Q ss_pred CChhHHHHHHHhhcccCccEEecccC-CCCCCCCCCCceEEecCChhHHHHHHHHHHHH-cC-CeEEEEEEEeCC-cccc
Q 002267 123 QSSGIAHVISHVVNELNVPLLSFGAT-DPTLTSLQYPYFLRTTQSDYYQMHAVADLVEY-YG-WREVIAIFVDDD-YGRN 198 (945)
Q Consensus 123 ~~s~~~~~va~~~~~~~iP~Is~~a~-~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~-~~-w~~v~ii~~d~~-~g~~ 198 (945)
............+...++|+|.+... .|.......+.+..+..++...+..+++++.. .| .++|++|..+.. ....
T Consensus 112 ~~~~~~~~~~~~~~~~~ip~V~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~Gg~~~I~~i~~~~~~~~~~ 191 (342)
T 1jx6_A 112 LDTTRHRKFVEHVLDSTNTKLILQNITTPVREWDKHQPFLYVGFDHAEGSRELATEFGKFFPKHTYYSVLYFSEGYISDV 191 (342)
T ss_dssp CSSSTTHHHHHHHHHHCSCEEEEETCCSCBGGGTTSCCSEEEECCHHHHHHHHHHHHHHHSCTTCEEEEECCSTTHHHHH
T ss_pred CChHhHHHHHHHHHHcCCCEEEEecCCCcccccccCCCceEEecCcHHHHHHHHHHHHHHcCCCceEEEEEcCCcchhhH
Confidence 44332223334455678999876322 22110011233445666777777778887755 47 999999975432 2334
Q ss_pred hHHHHHHHHhhcCc-EEEEeecCCCCCChHHHHHHHHhhcc--CCceEEEEEcChhhHHHHHHHHHhCCC
Q 002267 199 GISVLGDALSKKRA-KISYKAPFSPGASRSAINSLLVGANL--MESRVFVVHVNPDTGLTIFSVAKSLGM 265 (945)
Q Consensus 199 ~~~~l~~~l~~~g~-~v~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vivl~~~~~~~~~~~~~a~~~g~ 265 (945)
-.+.+.+++++.|+ +.... +....+..+-...+.++.+ .++++|+ +.+...+..++++++++|+
T Consensus 192 R~~Gf~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~nd~~A~g~~~al~~~g~ 258 (342)
T 1jx6_A 192 RGDTFIHQVNRDNNFELQSA--YYTKATKQSGYDAAKASLAKHPDVDFIY-ACSTDVALGAVDALAELGR 258 (342)
T ss_dssp HHHHHHHHHHHHHCCEEEEE--ECCCSSHHHHHHHHHHHHHHCCCCSEEE-ESSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCCcEEEEE--ecCCCCHHHHHHHHHHHHHhCCCccEEE-ECCChhHHHHHHHHHHcCC
Confidence 56788889988886 33322 2212233333344444433 3467666 4566678889999999997
No 115
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=97.91 E-value=0.00041 Score=73.84 Aligned_cols=215 Identities=12% Similarity=0.009 Sum_probs=133.5
Q ss_pred eEEEEEEeccC-CccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-cCChhH
Q 002267 50 SVRIGALFTYD-SVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAIG-PQSSGI 127 (945)
Q Consensus 50 ~i~IG~l~~l~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiG-p~~s~~ 127 (945)
+++||++.|-. ..+-.....+++-++++. |+++ .+.++ .++..-.+....+++++|.+||- |..+..
T Consensus 2 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~--~~~~~-~~~~~~~~~i~~l~~~~vdgiii~~~~~~~ 70 (306)
T 8abp_A 2 NLKLGFLVKQPEEPWFQTEWKFADKAGKDL--------GFEV--IKIAV-PDGEKTLNAIDSLAASGAKGFVICTPDPKL 70 (306)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHHHHHH--------TEEE--EEEEC-CSHHHHHHHHHHHHHTTCCEEEEECSCGGG
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHHHHc--------CCEE--EEeCC-CCHHHHHHHHHHHHHcCCCEEEEeCCCchh
Confidence 68999999864 444456778888777775 4555 45566 47777777888888888887754 444444
Q ss_pred HHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHH-HHcCCe-----EEEEEE-EeC--Ccccc
Q 002267 128 AHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLV-EYYGWR-----EVIAIF-VDD--DYGRN 198 (945)
Q Consensus 128 ~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l-~~~~w~-----~v~ii~-~d~--~~g~~ 198 (945)
.......+...++|+|......+.......+.+..+..++...+..+++++ ++.|-+ +++++. ... .....
T Consensus 71 ~~~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~l~~~~g~~~~~~~~i~~~~~~~~~~~~~~~ 150 (306)
T 8abp_A 71 GSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMLAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARR 150 (306)
T ss_dssp HHHHHHHHHHTTCEEEEESSCCBCTTSCBCTTSCEEEECHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEECTTSHHHHH
T ss_pred hHHHHHHHHHCCCcEEEeCCCCCCccccccccccEEecChhHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCChHHHH
Confidence 455556677789999987643222211111123344556666666666655 343433 888886 332 23345
Q ss_pred hHHHHHHHHhhcCc---EEEEeecCCCCCChHHHHHHHHhhccC--CceE-EEEEcChhhHHHHHHHHHhCCCCCCCeEE
Q 002267 199 GISVLGDALSKKRA---KISYKAPFSPGASRSAINSLLVGANLM--ESRV-FVVHVNPDTGLTIFSVAKSLGMTAGSYVW 272 (945)
Q Consensus 199 ~~~~l~~~l~~~g~---~v~~~~~~~~~~~~~d~~~~l~~l~~~--~~~v-ivl~~~~~~~~~~~~~a~~~g~~~~~~~w 272 (945)
-.+.+.+++++.|. ++.....-. .+...-...++++... ++++ +|++.+...+..++++++++|+..++...
T Consensus 151 R~~Gf~~~l~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~a~~i~~~nD~~A~g~~~al~~~g~~v~di~v 228 (306)
T 8abp_A 151 RTTGSMDALKAAGFPEKQIYQVPTKS--NDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIG 228 (306)
T ss_dssp HHHHHHHHHHHHTCCGGGEEEEECSS--SSHHHHHHHHHHHHTTCTTCSEEEEECSSHHHHHHHHHHHHHTTCCGGGEEE
T ss_pred HHHHHHHHHHhcCCCCcEEEeeccCC--CChHHHHHHHHHHHHhCCCCceEEEEeCCcHHHHHHHHHHHHcCCCCCceEE
Confidence 56888999998874 344322211 3444445555555444 4556 46667788889999999999986533444
Q ss_pred EEeCC
Q 002267 273 IATDW 277 (945)
Q Consensus 273 i~~~~ 277 (945)
++.|.
T Consensus 229 vG~D~ 233 (306)
T 8abp_A 229 IGING 233 (306)
T ss_dssp EEESS
T ss_pred EEeCc
Confidence 55443
No 116
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=97.89 E-value=0.00036 Score=75.70 Aligned_cols=211 Identities=10% Similarity=-0.006 Sum_probs=129.8
Q ss_pred ceEEEEEEeccC-CccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChhH
Q 002267 49 SSVRIGALFTYD-SVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAIGPQSSGI 127 (945)
Q Consensus 49 ~~i~IG~l~~l~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~ 127 (945)
..-+||++.|.. ..+......|++.++++. |+++.+ .++..++....+....++++++.+||-......
T Consensus 57 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 126 (340)
T 1qpz_A 57 HTKSIGLLATSSEAAYFAEIIEAVEKNCFQK--------GYTLIL--GNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYP 126 (340)
T ss_dssp CCSEEEEEESCSCSHHHHHHHHHHHHHHHHT--------TCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECCSCCC
T ss_pred CCCEEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCEEEE--EeCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCC
Confidence 356899999863 344445667777666652 566654 566677776666677777788888774222211
Q ss_pred HHHHHHhhc-ccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEeCC--cccchHHHHH
Q 002267 128 AHVISHVVN-ELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDD--YGRNGISVLG 204 (945)
Q Consensus 128 ~~~va~~~~-~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~l~ 204 (945)
. ...+.+. ..++|+|.+....+. . ++...+..++..-+..+++++...|.++|++|..... ....-.+.+.
T Consensus 127 ~-~~~~~l~~~~~iPvV~~~~~~~~---~--~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~g~~~~~~~~~R~~Gf~ 200 (340)
T 1qpz_A 127 E-PLLAMLEEYRHIPMVVMDWGEAK---A--DFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFM 200 (340)
T ss_dssp H-HHHHHHHTTTTSCEEEEEESSCC---C--SSSEEEECCHHHHHHHHHHHHHHHTCCCEEEECCCTTSHHHHHHHHHHH
T ss_pred h-HHHHHHHhhCCCCEEEEecccCC---C--CCCCEEEECHHHHHHHHHHHHHHCCCCEEEEEeCCCccccHHHHHHHHH
Confidence 1 1233333 368999987543221 1 2223455666666777888777779999999975422 3445578899
Q ss_pred HHHhhcCcEEEEeecCCCCCChHHHHHHHHhhcc--CCceEEEEEcChhhHHHHHHHHHhCCCCCCC-eEEEEeC
Q 002267 205 DALSKKRAKISYKAPFSPGASRSAINSLLVGANL--MESRVFVVHVNPDTGLTIFSVAKSLGMTAGS-YVWIATD 276 (945)
Q Consensus 205 ~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vivl~~~~~~~~~~~~~a~~~g~~~~~-~~wi~~~ 276 (945)
+++++.|+.+.....+....+..+-...+.++.+ .++++|+. .+...+..+++++++.|+..++ ...++.|
T Consensus 201 ~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~-~nd~~A~g~~~al~~~G~~vP~disvig~D 274 (340)
T 1qpz_A 201 KAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFC-GGDIMAMGALCAADEMGLRVPQDVSLIGYD 274 (340)
T ss_dssp HHHHHTTCCCCGGGBCCCCSSHHHHHHHHHHHHTSSSCCSEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEEEEEE
T ss_pred HHHHHCCCCCChhheEeCCCCHHHHHHHHHHHHcCCCCCcEEEE-CCHHHHHHHHHHHHHcCCCCCCCeEEEeEC
Confidence 9999999765322222211233343444555543 35677664 5667788899999999987554 3444443
No 117
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=97.88 E-value=0.00035 Score=72.91 Aligned_cols=207 Identities=8% Similarity=-0.043 Sum_probs=133.1
Q ss_pred EEEEEEeccC-CccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChhHHH
Q 002267 51 VRIGALFTYD-SVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAIGPQSSGIAH 129 (945)
Q Consensus 51 i~IG~l~~l~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~~~ 129 (945)
-+||+++|-. ..+-.....+++-++++. |+++.+ .++..++..-.+....++.+++.+||-........
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~ 72 (272)
T 3o74_A 3 RTLGFILPDLENPSYARIAKQLEQGARAR--------GYQLLI--ASSDDQPDSERQLQQLFRARRCDALFVASCLPPED 72 (272)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHT--------TCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEECCCCCSSC
T ss_pred eEEEEEeCCCcChhHHHHHHHHHHHHHHC--------CCEEEE--EeCCCCHHHHHHHHHHHHHcCCCEEEEecCccccH
Confidence 4799999864 333345667777666653 566654 45666777777777778888887776432221123
Q ss_pred HHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEeCC--cccchHHHHHHHH
Q 002267 130 VISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDD--YGRNGISVLGDAL 207 (945)
Q Consensus 130 ~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~l~~~l 207 (945)
.....+...++|+|......+ + +.+.....++...+..+++++...|.++|+++..+.. ....-.+.+.+++
T Consensus 73 ~~~~~~~~~~iPvV~~~~~~~---~---~~~~~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~~~l 146 (272)
T 3o74_A 73 DSYRELQDKGLPVIAIDRRLD---P---AHFCSVISDDRDASRQLAASLLSSAPRSIALIGARPELSVSQARAGGFDEAL 146 (272)
T ss_dssp CHHHHHHHTTCCEEEESSCCC---T---TTCEEEEECHHHHHHHHHHHHHTTCCSEEEEEEECTTSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCEEEEccCCC---c---cccCEEEEchHHHHHHHHHHHHHCCCcEEEEEecCCCCccHHHHHHHHHHHH
Confidence 344556678999998654332 1 1233455677777788888888889999999986533 3445678899999
Q ss_pred hhcCcEEEEeecCCCCCChHHHHHHHHhhcc--C-CceEEEEEcChhhHHHHHHHHHhCCCCCCCeEEEEeC
Q 002267 208 SKKRAKISYKAPFSPGASRSAINSLLVGANL--M-ESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIATD 276 (945)
Q Consensus 208 ~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~--~-~~~vivl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~ 276 (945)
++.|+++.....-. .+..+....+.++.+ . .+++|+. .+...+..++++++++|+.+++...++.|
T Consensus 147 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~ai~~-~~d~~a~g~~~al~~~g~vp~di~vvg~d 215 (272)
T 3o74_A 147 QGYTGEVRRYQGEA--FSRECGQRLMQQLIDDLGGLPDALVT-TSYVLLQGVFDTLQARPVDSRQLQLGTFG 215 (272)
T ss_dssp TTCCSEEEEEEESS--SSHHHHHHHHHHHHHHHTSCCSEEEE-SSHHHHHHHHHHHHTSCGGGCCCEEEEES
T ss_pred HHcCCChheeecCC--CCHHHHHHHHHHHHhcCCCCCcEEEE-eCchHHHHHHHHHHHcCCCccceEEEEeC
Confidence 99998765443222 344444444444432 2 4677654 56777889999999999833344455544
No 118
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=97.87 E-value=5.9e-05 Score=80.64 Aligned_cols=121 Identities=13% Similarity=0.152 Sum_probs=74.0
Q ss_pred CCCChHHhhcCCCCeEEeeCchHHHHHHH---hhccccccce-ecCCHHHHHHHHhcCCCCCceeEEecchhhHHHHhcc
Q 002267 701 QIEGIDSLISSTEPIGVQDGSFAWNYLVD---ELKIAESRLV-KLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSK 776 (945)
Q Consensus 701 ~i~~~~dL~~~~~~v~~~~~s~~~~~l~~---~~~~~~~~~~-~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~ 776 (945)
+|++++||. |++|++..|+.....+.. ..++....+. .+.+..+.+.+|.+ |++|+++...++......+
T Consensus 96 ~i~s~~dL~--Gk~i~~~~gs~~~~~l~~~l~~~Gl~~~~v~~~~~~~~~~~~al~~----G~vDa~~~~~~~~~~~~~~ 169 (308)
T 2x26_A 96 PIKTVADLK--GHKVAFQKGSSSHNLLLRALRQAGLKFTDIQPTYLTPADARAAFQQ----GNVDAWAIWDPYYSAALLQ 169 (308)
T ss_dssp SCCSGGGGT--TSEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEECCHHHHHHHHHT----TSSSEEEEETTHHHHHHHH
T ss_pred CCCCHHHcC--CCEEeeeCCCcHHHHHHHHHHHcCCCHHHeEEEecChHHHHHHHHc----CCCCEEEecchhHHHHHhc
Confidence 688999997 889999888765544332 3344333332 34567889999999 8999999888887776554
Q ss_pred CCccEEEeCc--cccccceEEEec----CCCc-chHHHHHHHHh----ccccc-cHHHHHHHhcC
Q 002267 777 TNCEFRTVGQ--EFTKSGWGFAFQ----RDSP-LAIDLSTAILQ----LSENG-DLQKIHNKWLT 829 (945)
Q Consensus 777 ~~~~~~~~~~--~~~~~~~~~~~~----k~sp-l~~~i~~~i~~----l~e~G-~~~~i~~~w~~ 829 (945)
. .++++.. .+....-.+++. +..| +.+.|.+++.+ +.+++ ...++..+|+.
T Consensus 170 ~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~al~~a~~~~~~~~~~~~~~~~~~~~ 232 (308)
T 2x26_A 170 G--GVRVLKDGTDLNQTGSFYLAARPYAEKNGAFIQGVLATFSEADALTRSQREQSIALLAKTMG 232 (308)
T ss_dssp S--SEEEEEESTTSCCCCEEEEEEHHHHHHTHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHT
T ss_pred C--CcEEEecCCCcCCcceEEEEcHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHhC
Confidence 2 2333321 221112223332 3344 77888887776 34444 34556666664
No 119
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=97.80 E-value=8.7e-05 Score=78.06 Aligned_cols=205 Identities=11% Similarity=0.038 Sum_probs=125.8
Q ss_pred ceEEEEEEeccC-CccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChhH
Q 002267 49 SSVRIGALFTYD-SVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAIGPQSSGI 127 (945)
Q Consensus 49 ~~i~IG~l~~l~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~ 127 (945)
..-+||+++|-. ..+-.....+++-++++. |+.+.+...+ ++..-.+....++++++.+|| ......
T Consensus 4 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~~~---~~~~~~~~~~~l~~~~vdgiI-~~~~~~ 71 (280)
T 3gyb_A 4 RTQLIAVLIDDYSNPWFIDLIQSLSDVLTPK--------GYRLSVIDSL---TSQAGTDPITSALSMRPDGII-IAQDIP 71 (280)
T ss_dssp CCCEEEEEESCTTSGGGHHHHHHHHHHHGGG--------TCEEEEECSS---SSCSSSCHHHHHHTTCCSEEE-EESCC-
T ss_pred ccCEEEEEeCCCCChHHHHHHHHHHHHHHHC--------CCEEEEEeCC---CchHHHHHHHHHHhCCCCEEE-ecCCCC
Confidence 356899999864 444445666666665553 5666655444 443334455566777888888 332222
Q ss_pred HHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEeCCcccchHHHHHHHH
Q 002267 128 AHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDDYGRNGISVLGDAL 207 (945)
Q Consensus 128 ~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l 207 (945)
...+.. .++|+|......+ .+...+ .+..++...+..+++++...|.++|+++..+......-.+.+.+++
T Consensus 72 ~~~~~~----~~iPvV~~~~~~~--~~~~~~---~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~R~~gf~~~l 142 (280)
T 3gyb_A 72 DFTVPD----SLPPFVIAGTRIT--QASTHD---SVANDDFRGAEIATKHLIDLGHTHIAHLRVGSGAGLRRFESFEATM 142 (280)
T ss_dssp -----------CCCEEEESCCCS--SSCSTT---EEEECHHHHHHHHHHHHHHTTCCSEEEECCSSHHHHHHHHHHHHHH
T ss_pred hhhHhh----cCCCEEEECCCCC--CCCCCC---EEEechHHHHHHHHHHHHHCCCCeEEEEeCCCchHHHHHHHHHHHH
Confidence 222222 8999998755432 112223 3456677777888888888899999999866444556678899999
Q ss_pred hhcCcEEEEeecCCCCCChHHHHHHHHhhcc--CCceEEEEEcChhhHHHHHHHHHhCCCCCCC-eEEEEeC
Q 002267 208 SKKRAKISYKAPFSPGASRSAINSLLVGANL--MESRVFVVHVNPDTGLTIFSVAKSLGMTAGS-YVWIATD 276 (945)
Q Consensus 208 ~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vivl~~~~~~~~~~~~~a~~~g~~~~~-~~wi~~~ 276 (945)
++.|+.+.... .....+..+....+.++.+ .++++|+ +.+...+..++++++++|+..++ ...++.|
T Consensus 143 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vvg~d 212 (280)
T 3gyb_A 143 RAHGLEPLSND-YLGPAVEHAGYTETLALLKEHPEVTAIF-SSNDITAIGALGAARELGLRVPEDLSIIGYD 212 (280)
T ss_dssp HHTTCCCEECC-CCSCCCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHHHTCCTTTTCEEEEES
T ss_pred HHcCcCCCccc-ccCCCCHHHHHHHHHHHHhCCCCCCEEE-ECChHHHHHHHHHHHHcCCCCCCeeEEEEEC
Confidence 99998765433 3222344444444555433 3466665 45677888999999999987544 3444443
No 120
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=97.77 E-value=0.00058 Score=72.03 Aligned_cols=209 Identities=8% Similarity=-0.004 Sum_probs=124.9
Q ss_pred CceEEEEEEeccCC---ccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-cC
Q 002267 48 PSSVRIGALFTYDS---VIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAIG-PQ 123 (945)
Q Consensus 48 ~~~i~IG~l~~l~~---~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiG-p~ 123 (945)
...-+||+++|-.. .+-.....+++-++++ .|+.+.+.. +..++.........+.++++.+||- |.
T Consensus 6 ~~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~--------~g~~~~~~~--~~~~~~~~~~~~~~l~~~~vdgiIi~~~ 75 (288)
T 3gv0_A 6 GKTNVIALVLSVDEELMGFTSQMVFGITEVLST--------TQYHLVVTP--HIHAKDSMVPIRYILETGSADGVIISKI 75 (288)
T ss_dssp -CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTT--------SSCEEEECC--BSSGGGTTHHHHHHHHHTCCSEEEEESC
T ss_pred CCCCEEEEEecCCccccHHHHHHHHHHHHHHHH--------cCCEEEEec--CCcchhHHHHHHHHHHcCCccEEEEecC
Confidence 34578999999643 2223344444444333 166666543 3333333222222344567766653 22
Q ss_pred ChhHHHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEeCC--cccchHH
Q 002267 124 SSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDD--YGRNGIS 201 (945)
Q Consensus 124 ~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~ 201 (945)
... . .....+...++|+|......+ + +.+-.+..++...+..+++++...|-++|+++..+.. ....-.+
T Consensus 76 ~~~-~-~~~~~l~~~~iPvV~i~~~~~---~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~ 147 (288)
T 3gv0_A 76 EPN-D-PRVRFMTERNMPFVTHGRSDM---G---IEHAFHDFDNEAYAYEAVERLAQCGRKRIAVIVPPSRFSFHDHARK 147 (288)
T ss_dssp CTT-C-HHHHHHHHTTCCEEEESCCCS---S---CCCEEEEECHHHHHHHHHHHHHHTTCCEEEEECCCTTSHHHHHHHH
T ss_pred CCC-c-HHHHHHhhCCCCEEEECCcCC---C---CCCcEEEeCcHHHHHHHHHHHHHCCCCeEEEEcCCcccchHHHHHH
Confidence 211 1 334556678999998654322 1 1223456677777888888888889999999975532 3445678
Q ss_pred HHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccC--CceEEEEEcChhhHHHHHHHHHhCCCCCCCe-EEEEe
Q 002267 202 VLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLM--ESRVFVVHVNPDTGLTIFSVAKSLGMTAGSY-VWIAT 275 (945)
Q Consensus 202 ~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~--~~~vivl~~~~~~~~~~~~~a~~~g~~~~~~-~wi~~ 275 (945)
.+.+++++.|+.+.....+....+..+....+.++.+. .+++|+ +.+...+..++++++++|+..++- ..++.
T Consensus 148 gf~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~di~vig~ 223 (288)
T 3gv0_A 148 GFNRGIRDFGLTEFPIDAVTIETPLEKIRDFGQRLMQSSDRPDGIV-SISGSSTIALVAGFEAAGVKIGEDVDIVSK 223 (288)
T ss_dssp HHHHHHHHTTCEECCCCSCCTTSCHHHHHHHHHHHTTSSSCCSEEE-ESCHHHHHHHHHHHHTTTCCTTTSCEEEEE
T ss_pred HHHHHHHHcCCCcchhheeccccchHHHHHHHHHHHhCCCCCcEEE-EcCcHHHHHHHHHHHHcCCCCCCceEEEEe
Confidence 89999999998765433333223445555666666544 466665 566777888999999999875543 34443
No 121
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=97.76 E-value=0.00019 Score=75.91 Aligned_cols=209 Identities=13% Similarity=0.086 Sum_probs=131.3
Q ss_pred CceEEEEEEeccC-CccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChh
Q 002267 48 PSSVRIGALFTYD-SVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAIGPQSSG 126 (945)
Q Consensus 48 ~~~i~IG~l~~l~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~ 126 (945)
...-+||+++|-. ..+-.....+++-++++. |+.+. +.++..++....+....++++++.+||-.....
T Consensus 6 ~~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 75 (291)
T 3egc_A 6 KRSNVVGLIVSDIENVFFAEVASGVESEARHK--------GYSVL--LANTAEDIVREREAVGQFFERRVDGLILAPSEG 75 (291)
T ss_dssp -CCCEEEEEESCTTSHHHHHHHHHHHHHHHHT--------TCEEE--EEECTTCHHHHHHHHHHHHHTTCSEEEECCCSS
T ss_pred CCCcEEEEEECCCcchHHHHHHHHHHHHHHHC--------CCEEE--EEeCCCCHHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence 3457899999864 333345667777666663 55555 456666777777777777788888776433222
Q ss_pred HHHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEeC--CcccchHHHHH
Q 002267 127 IAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDD--DYGRNGISVLG 204 (945)
Q Consensus 127 ~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~--~~g~~~~~~l~ 204 (945)
.......+...++|+|......+ + +.+..+..++...+..+++++...|-++|+++.... .....-.+.+.
T Consensus 76 -~~~~~~~~~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~ 148 (291)
T 3egc_A 76 -EHDYLRTELPKTFPIVAVNRELR---I---PGCGAVLSENVRGARTAVEYLIARGHTRIGAIVGSAGLMTSRERLKGFR 148 (291)
T ss_dssp -CCHHHHHSSCTTSCEEEESSCCC---C---TTCEEEEECHHHHHHHHHHHHHHTTCCSEEEECSCTTSHHHHHHHHHHH
T ss_pred -ChHHHHHhhccCCCEEEEecccC---C---CCCCEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCCCCcCHHHHHHHHH
Confidence 33445667778999998654332 1 223455667777788888888888999999997553 33445678899
Q ss_pred HHHhhcCcEEEEee----cCCCCCChHHHHHHHHhhccCCceEEEEEcChhhHHHHHHHHHhCCCCCCC-eEEEEeC
Q 002267 205 DALSKKRAKISYKA----PFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGS-YVWIATD 276 (945)
Q Consensus 205 ~~l~~~g~~v~~~~----~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~~~~~~~~~~a~~~g~~~~~-~~wi~~~ 276 (945)
+++++.|+.+.... ..........+...+++ ..++++|+ +.+...+..++++++++|+..++ ...++.|
T Consensus 149 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vvg~d 222 (291)
T 3egc_A 149 AAMSAAGLPVRQEWIAAGGVRADNGRDGAIKVLTG--ADRPTALL-TSSHRITEGAMQALNVLGLRYGPDVEIVSFD 222 (291)
T ss_dssp HHHHHTTCCCCGGGEEC------CCHHHHHHHHTC---CCCSEEE-ESSHHHHHHHHHHHHHHTCCBTTTBEEEEES
T ss_pred HHHHHcCCCCCHHHeEeCCCChhHHHHHHHHHHhC--CCCCcEEE-ECCcHHHHHHHHHHHHcCCCCCCceEEEEec
Confidence 99999987643211 11111122223333321 24577766 46777888999999999987554 4444444
No 122
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=97.75 E-value=0.0011 Score=70.90 Aligned_cols=200 Identities=9% Similarity=-0.011 Sum_probs=128.9
Q ss_pred eEEEEEEecc-CCccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-cCChhH
Q 002267 50 SVRIGALFTY-DSVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAIG-PQSSGI 127 (945)
Q Consensus 50 ~i~IG~l~~l-~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiG-p~~s~~ 127 (945)
..+||+++|- +..+-.....+++.++++. |+++. +.++..++..-.+....++.+++.+||- |.....
T Consensus 2 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~ 71 (313)
T 3m9w_A 2 EVKIGMAIDDLRLERWQKDRDIFVKKAESL--------GAKVF--VQSANGNEETQMSQIENMINRGVDVLVIIPYNGQV 71 (313)
T ss_dssp -CEEEEEESCCSSSTTHHHHHHHHHHHHHT--------SCEEE--EEECTTCHHHHHHHHHHHHHTTCSEEEEECSSTTS
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHc--------CCEEE--EECCCCCHHHHHHHHHHHHHcCCCEEEEeCCChhh
Confidence 3579999985 3445556778888777764 55555 4566778877777788888888877764 333333
Q ss_pred HHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHH-HcCCeEEEEEEEeCC--cccchHHHHH
Q 002267 128 AHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVE-YYGWREVIAIFVDDD--YGRNGISVLG 204 (945)
Q Consensus 128 ~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~-~~~w~~v~ii~~d~~--~g~~~~~~l~ 204 (945)
.......+...++|+|.+....+. .. ....+..++...+..+++++. ..|-++|++|..+.. ....-.+.+.
T Consensus 72 ~~~~~~~~~~~~iPvV~~~~~~~~---~~--~~~~V~~D~~~~g~~a~~~L~~~~G~~~i~~i~g~~~~~~~~~R~~Gf~ 146 (313)
T 3m9w_A 72 LSNVVKEAKQEGIKVLAYDRMIND---AD--IDFYISFDNEKVGELQAKALVDIVPQGNYFLMGGSPVDNNAKLFRAGQM 146 (313)
T ss_dssp CHHHHHHHHTTTCEEEEESSCCTT---SC--CSEEEEECHHHHHHHHHHHHHHHCSSEEEEEEESCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHCCCeEEEECCcCCC---CC--ceEEEecCHHHHHHHHHHHHHHhCCCCcEEEEECCCCCccHHHHHHHHH
Confidence 234556667789999987543322 11 113455677777888888776 899999999975422 2334567888
Q ss_pred HHHhhc----CcEEEEeecCCCCCChHHHHHHHHhhcc---CCceEEEEEcChhhHHHHHHHHHhCCCC
Q 002267 205 DALSKK----RAKISYKAPFSPGASRSAINSLLVGANL---MESRVFVVHVNPDTGLTIFSVAKSLGMT 266 (945)
Q Consensus 205 ~~l~~~----g~~v~~~~~~~~~~~~~d~~~~l~~l~~---~~~~vivl~~~~~~~~~~~~~a~~~g~~ 266 (945)
+++++. ++++....... ..+.......+.++.+ .++++|+ +.+...+..++++++++|+.
T Consensus 147 ~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~ai~-~~~d~~a~g~~~al~~~G~~ 213 (313)
T 3m9w_A 147 KVLKPYVDSGKIKVVGDQWVD-GWLPENALKIMENALTANNNKIDAVV-ASNDATAGGAIQALSAQGLS 213 (313)
T ss_dssp HHHHHHHHTTSEEEEEEEECG-GGCHHHHHHHHHHHHHHTTTCCCEEE-ESSHHHHHHHHHHHHTTTCT
T ss_pred HHHHhhccCCCEEEEeeccCC-CcCHHHHHHHHHHHHHhCCCCeeEEE-ECCCchHHHHHHHHHHcCCC
Confidence 888887 67765443211 1233343344444432 3566655 45667788899999999986
No 123
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=97.74 E-value=0.0011 Score=70.02 Aligned_cols=209 Identities=14% Similarity=0.088 Sum_probs=126.4
Q ss_pred ceEEEEEEeccC------CccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEcc
Q 002267 49 SSVRIGALFTYD------SVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAIGP 122 (945)
Q Consensus 49 ~~i~IG~l~~l~------~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp 122 (945)
..-+||+++|.. ..+-.....|++-++++. |+.+. +.++..++..-.+....+..++|.+||-.
T Consensus 6 ~s~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdGiI~~ 75 (295)
T 3hcw_A 6 QTYKIGLVLKGSEEPIRLNPFYINVLLGISETCNQH--------GYGTQ--TTVSNNMNDLMDEVYKMIKQRMVDAFILL 75 (295)
T ss_dssp CSCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTT--------TCEEE--ECCCCSHHHHHHHHHHHHHTTCCSEEEES
T ss_pred CCcEEEEEeecCCcccccChHHHHHHHHHHHHHHHC--------CCEEE--EEcCCCChHHHHHHHHHHHhCCcCEEEEc
Confidence 456899999542 222234455555444432 56654 45555555555555556667788877642
Q ss_pred CChhHHHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEeCC--cccchH
Q 002267 123 QSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDD--YGRNGI 200 (945)
Q Consensus 123 ~~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~ 200 (945)
..... ......+...++|+|......+... . .+..+..++..-+..+++.+...|.++|++|..... ....-.
T Consensus 76 ~~~~~-~~~~~~l~~~~iPvV~i~~~~~~~~-~---~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~ 150 (295)
T 3hcw_A 76 YSKEN-DPIKQMLIDESMPFIVIGKPTSDID-H---QFTHIDNDNILASENLTRHVIEQGVDELIFITEKGNFEVSKDRI 150 (295)
T ss_dssp CCCTT-CHHHHHHHHTTCCEEEESCCCSSGG-G---GSCEEEECHHHHHHHHHHHHHHHCCSEEEEEEESSCCHHHHHHH
T ss_pred CcccC-hHHHHHHHhCCCCEEEECCCCcccc-C---CceEEecCcHHHHHHHHHHHHHcCCccEEEEcCCccchhHHHHH
Confidence 22211 1344556678999998754332110 0 123345566667777888887789999999986533 334567
Q ss_pred HHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhcc-----CCceEEEEEcChhhHHHHHHHHHhCCCCCCCeE-EEE
Q 002267 201 SVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANL-----MESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYV-WIA 274 (945)
Q Consensus 201 ~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~-----~~~~vivl~~~~~~~~~~~~~a~~~g~~~~~~~-wi~ 274 (945)
+.+.+++++.|+.+.... .. .+..+....++++.+ ..+++|+ +.+...+..++++++++|+..++-+ .++
T Consensus 151 ~Gf~~al~~~g~~~~~~~-~~--~~~~~~~~~~~~~l~~~~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~di~vig 226 (295)
T 3hcw_A 151 QGFETVASQFNLDYQIIE-TS--NEREVILNYMQNLHTRLKDPNIKQAII-SLDAMLHLAILSVLYELNIEIPKDVMTAT 226 (295)
T ss_dssp HHHHHHHHHTTCEEEEEE-EC--SCHHHHHHHHHHHHHHHTCTTSCEEEE-ESSHHHHHHHHHHHHHTTCCTTTTEEEEE
T ss_pred HHHHHHHHHcCCCeeEEe-cc--CCHHHHHHHHHHHHhhcccCCCCcEEE-ECChHHHHHHHHHHHHcCCCCCCceEEEE
Confidence 889999999998765221 11 334443334444322 2577765 5677778999999999998765434 444
Q ss_pred eC
Q 002267 275 TD 276 (945)
Q Consensus 275 ~~ 276 (945)
.|
T Consensus 227 ~D 228 (295)
T 3hcw_A 227 FN 228 (295)
T ss_dssp EC
T ss_pred eC
Confidence 43
No 124
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=97.72 E-value=0.00045 Score=74.29 Aligned_cols=93 Identities=22% Similarity=0.201 Sum_probs=59.8
Q ss_pred CCCCChHHhhcCCCCeEEeeCchHHHHHHH---hhccccc--cceecCCHHHHHHHHhcCCCCCceeEEecchhhHHHHh
Q 002267 700 SQIEGIDSLISSTEPIGVQDGSFAWNYLVD---ELKIAES--RLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFM 774 (945)
Q Consensus 700 ~~i~~~~dL~~~~~~v~~~~~s~~~~~l~~---~~~~~~~--~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~ 774 (945)
.+|++++||. |++|++..|+.....+.. ..++... +++.. +..+...+|.+ |++|+++...++.....
T Consensus 121 s~I~s~~DLk--Gk~i~v~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~-~~~~~~~al~~----G~vDa~~~~~p~~~~~~ 193 (324)
T 3ksx_A 121 SALRTVADLK--GKRIAFQKGSSAHNLLLRVLAKSGLSMRDITPLYL-SPANARAAFAA----GQVDAWAIWDPWYSALT 193 (324)
T ss_dssp CSCCSGGGGT--TCEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEEC-CHHHHHHHHHT----TCCSEEEEETTHHHHHH
T ss_pred CCCCCHHHhC--CCEEEecCCChHHHHHHHHHHHcCCCHHHeEEEeC-CHHHHHHHHHc----CCCCEEEEccHHHHHHH
Confidence 3799999997 999999988855443332 3344333 33333 68899999999 89999998888887766
Q ss_pred ccCCccEEEeCccccccceEEEecC
Q 002267 775 SKTNCEFRTVGQEFTKSGWGFAFQR 799 (945)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~~~~~~k 799 (945)
.+...+.......+......+++++
T Consensus 194 ~~~~~~~l~~~~~~~~~~~~~~~~~ 218 (324)
T 3ksx_A 194 LDGSARLLANGEGLGLTGGFFLSSR 218 (324)
T ss_dssp HTTSEEEEEESTTSCCCCEEEEEEH
T ss_pred hcCCcEEEecccccCCCccEEEECH
Confidence 5523343333333333334455544
No 125
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=97.71 E-value=0.001 Score=70.14 Aligned_cols=208 Identities=15% Similarity=0.084 Sum_probs=127.4
Q ss_pred CceEEEEEEeccCCccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChhH
Q 002267 48 PSSVRIGALFTYDSVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAIGPQSSGI 127 (945)
Q Consensus 48 ~~~i~IG~l~~l~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~ 127 (945)
...-+||++++++..+-.....+++-++++. |+++.+...+...+ -.+....++.++|.+||-......
T Consensus 10 ~~~~~Igvi~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~~~~~~~---~~~~~~~l~~~~vdgiIi~~~~~~ 78 (289)
T 3k9c_A 10 ASSRLLGVVFELQQPFHGDLVEQIYAAATRR--------GYDVMLSAVAPSRA---EKVAVQALMRERCEAAILLGTRFD 78 (289)
T ss_dssp ---CEEEEEEETTCHHHHHHHHHHHHHHHHT--------TCEEEEEEEBTTBC---HHHHHHHHTTTTEEEEEEETCCCC
T ss_pred CCCCEEEEEEecCCchHHHHHHHHHHHHHHC--------CCEEEEEeCCCCHH---HHHHHHHHHhCCCCEEEEECCCCC
Confidence 3457899999554444445667777666653 56776655544322 344555677778888764322222
Q ss_pred HHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEeCC-cccchHHHHHHH
Q 002267 128 AHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDD-YGRNGISVLGDA 206 (945)
Q Consensus 128 ~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~~-~g~~~~~~l~~~ 206 (945)
... ...+.. ++|+|......+ + +.+-.+..++..-+..+++++...|-++|+++..... ....-.+.+.++
T Consensus 79 ~~~-~~~~~~-~iPvV~i~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~R~~Gf~~a 150 (289)
T 3k9c_A 79 TDE-LGALAD-RVPALVVARASG---L---PGVGAVRGDDVAGITLAVDHLTELGHRNIAHIDGADAPGGADRRAGFLAA 150 (289)
T ss_dssp HHH-HHHHHT-TSCEEEESSCCS---S---TTSEEEEECHHHHHHHHHHHHHHTTCCSEEEECCTTSTTHHHHHHHHHHH
T ss_pred HHH-HHHHHc-CCCEEEEcCCCC---C---CCCCEEEeChHHHHHHHHHHHHHCCCCcEEEEeCCCCccHHHHHHHHHHH
Confidence 233 334445 999998654332 1 2234456677777778888888889999999986533 334557889999
Q ss_pred HhhcCcEEEEeecCCCCCChHHHHHHHHhhcc--CCceEEEEEcChhhHHHHHHHHHhCCCCCCC-eEEEEeC
Q 002267 207 LSKKRAKISYKAPFSPGASRSAINSLLVGANL--MESRVFVVHVNPDTGLTIFSVAKSLGMTAGS-YVWIATD 276 (945)
Q Consensus 207 l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vivl~~~~~~~~~~~~~a~~~g~~~~~-~~wi~~~ 276 (945)
+++.|+.+.... +....+..+-...+.++.+ .++++|+ +.+...+..+++++++.|+..++ ...++.|
T Consensus 151 l~~~g~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~di~vig~D 221 (289)
T 3k9c_A 151 MDRHGLSASATV-VTGGTTETEGAEGMHTLLEMPTPPTAVV-AFNDRCATGVLDLLVRSGRDVPADISVVGYD 221 (289)
T ss_dssp HHHTTCGGGEEE-ECCCSSHHHHHHHHHHHHTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEEEEE
T ss_pred HHHCCCCCCccE-EECCCCHHHHHHHHHHHHcCCCCCCEEE-ECChHHHHHHHHHHHHcCCCCCCceEEEEEC
Confidence 999997632211 1222344444455555544 3466664 45677788999999999987654 3444444
No 126
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=97.66 E-value=0.00028 Score=74.48 Aligned_cols=204 Identities=14% Similarity=0.064 Sum_probs=124.5
Q ss_pred CceEEEEEEecc--CCccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCCh
Q 002267 48 PSSVRIGALFTY--DSVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAIGPQSS 125 (945)
Q Consensus 48 ~~~i~IG~l~~l--~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s 125 (945)
...-+||+++|. +..+-.....+++-++++. |+.+.+...+...+.. .+....+..+++.+||-....
T Consensus 9 ~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~~~~~~~~~--~~~~~~l~~~~vdgiIi~~~~ 78 (289)
T 3g85_A 9 QSKPTIALYWSSDISVNIISRFLRGLQSKLAKQ--------NYNYNVVICPYKTDCL--HLEKGISKENSFDAAIIANIS 78 (289)
T ss_dssp --CCEEEEEEETTSCGGGHHHHHHHHHHHHHHT--------TTCSEEEEEEECTTCG--GGCGGGSTTTCCSEEEESSCC
T ss_pred CCCceEEEEeccccchHHHHHHHHHHHHHHHHc--------CCeEEEEecCCCchhH--HHHHHHHhccCCCEEEEecCC
Confidence 456789999983 3444445667777666653 4555544433222211 222334455688777653333
Q ss_pred hHHHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEeCC--cccchHHHH
Q 002267 126 GIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDD--YGRNGISVL 203 (945)
Q Consensus 126 ~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~l 203 (945)
.....+... ...++|+|......+ .+-.+..++..-+..+++++...|.++|+++..+.. ....-.+.+
T Consensus 79 ~~~~~~~~~-~~~~iPvV~~~~~~~--------~~~~V~~D~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf 149 (289)
T 3g85_A 79 NYDLEYLNK-ASLTLPIILFNRLSN--------KYSSVNVDNYKMGEKASLLFAKKRYKSAAAILTESLNDAMDNRNKGF 149 (289)
T ss_dssp HHHHHHHHH-CCCSSCEEEESCCCS--------SSEEEEECHHHHHHHHHHHHHHTTCCBCEEEECCCSSHHHHHHHHHH
T ss_pred cccHHHHHh-ccCCCCEEEECCCCC--------CCCEEEeCHHHHHHHHHHHHHHcCCCEEEEEeCCcccccHHHHHHHH
Confidence 333333333 367999998755322 234456677777888888888889999999986532 344567889
Q ss_pred HHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccC--CceEEEEEcChhhHHHHHHHHHhCCCCCCCeE
Q 002267 204 GDALSKKRAKISYKAPFSPGASRSAINSLLVGANLM--ESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYV 271 (945)
Q Consensus 204 ~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~--~~~vivl~~~~~~~~~~~~~a~~~g~~~~~~~ 271 (945)
.+++++.|+.+.....+....+..+....+.++.+. ++++|+ +.+...+..++++++++|+..++-+
T Consensus 150 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di 218 (289)
T 3g85_A 150 IETCHKNGIKISENHIIAAENSIHGGVDAAKKLMKLKNTPKALF-CNSDSIALGVISVLNKRQISIPDDI 218 (289)
T ss_dssp HHHHHHTTCBCCGGGEEECCSSHHHHHHHHHHHTTSSSCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTC
T ss_pred HHHHHHcCCCCChhheeccCCCHHHHHHHHHHHHcCCCCCcEEE-EcCCHHHHHHHHHHHHcCCCCCCce
Confidence 999999997643211111123444445556665543 466665 5677788899999999998765433
No 127
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=97.64 E-value=0.00075 Score=73.28 Aligned_cols=209 Identities=10% Similarity=0.009 Sum_probs=128.6
Q ss_pred CceEEEEEEeccC-CccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChh
Q 002267 48 PSSVRIGALFTYD-SVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAIGPQSSG 126 (945)
Q Consensus 48 ~~~i~IG~l~~l~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~ 126 (945)
...-+||+++|-. ..+-.....+++-++++. |+.+. +.++..++..-.+....++++++.+||=.....
T Consensus 66 ~~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~i~~l~~~~vdGiIi~~~~~ 135 (344)
T 3kjx_A 66 NRVNLVAVIIPSLSNMVFPEVLTGINQVLEDT--------ELQPV--VGVTDYLPEKEEKVLYEMLSWRPSGVIIAGLEH 135 (344)
T ss_dssp SCCSEEEEEESCSSSSSHHHHHHHHHHHHTSS--------SSEEE--EEECTTCHHHHHHHHHHHHTTCCSEEEEECSCC
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHHHHHC--------CCEEE--EEeCCCCHHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 4467899999864 333334445555444331 56664 456666777766677777777777665322211
Q ss_pred HHHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEeC---CcccchHHHH
Q 002267 127 IAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDD---DYGRNGISVL 203 (945)
Q Consensus 127 ~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~---~~g~~~~~~l 203 (945)
.. .....+...++|+|....... .+....+..++..-+..+++++...|.++|++|.... .....-.+.+
T Consensus 136 ~~-~~~~~l~~~~iPvV~i~~~~~------~~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~Gf 208 (344)
T 3kjx_A 136 SE-AARAMLDAAGIPVVEIMDSDG------KPVDAMVGISHRRAGREMAQAILKAGYRRIGFMGTKMPLDYRARKRFEGF 208 (344)
T ss_dssp CH-HHHHHHHHCSSCEEEEEECSS------CCSSEEEEECHHHHHHHHHHHHHHHTCCSCCEEESSTTTCHHHHHHHHHH
T ss_pred CH-HHHHHHHhCCCCEEEEeCCCC------CCCCCEEEECcHHHHHHHHHHHHHCCCCeEEEEecCcccCccHHHHHHHH
Confidence 11 344556678999998742111 1223345667777777788888778999999998653 2334557889
Q ss_pred HHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhcc--CCceEEEEEcChhhHHHHHHHHHhCCCCCCCeEEEE
Q 002267 204 GDALSKKRAKISYKAPFSPGASRSAINSLLVGANL--MESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIA 274 (945)
Q Consensus 204 ~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vivl~~~~~~~~~~~~~a~~~g~~~~~~~wi~ 274 (945)
.+++++.|+.+.....+....+...-...+.++.+ .++++|+ +.+...+..+++++++.|+..++-+-|.
T Consensus 209 ~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~-~~nd~~A~g~~~al~~~g~~vP~disvv 280 (344)
T 3kjx_A 209 TEVLGKNGVEIEDREFYSGGSALAKGREMTQAMLERSPDLDFLY-YSNDMIAAGGLLYLLEQGIDIPGQIGLA 280 (344)
T ss_dssp HHHHHHTTCCCSCEEECSSCCCHHHHHHHHHHHHHHSTTCCEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHHcCCCCChheEEeCCCCHHHHHHHHHHHHhcCCCCCEEE-ECCHHHHHHHHHHHHHcCCCCCCceEEE
Confidence 99999999865433323222333333333444332 3577766 5667788899999999998765544333
No 128
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=97.62 E-value=0.00084 Score=71.36 Aligned_cols=209 Identities=12% Similarity=0.048 Sum_probs=127.5
Q ss_pred CceEEEEEEeccC-CccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChh
Q 002267 48 PSSVRIGALFTYD-SVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAIGPQSSG 126 (945)
Q Consensus 48 ~~~i~IG~l~~l~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~ 126 (945)
...-+||+++|-. ..+-.....+++-++++. |+.+. +.++..++..-.+....++.++|.+||-.....
T Consensus 13 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~ 82 (303)
T 3kke_A 13 SRSGTIGLIVPDVNNAVFADMFSGVQMAASGH--------STDVL--LGQIDAPPRGTQQLSRLVSEGRVDGVLLQRRED 82 (303)
T ss_dssp ----CEEEEESCTTSTTHHHHHHHHHHHHHHT--------TCCEE--EEECCSTTHHHHHHHHHHHSCSSSEEEECCCTT
T ss_pred CCCCEEEEEeCCCcChHHHHHHHHHHHHHHHC--------CCEEE--EEeCCCChHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 3456799999864 344445667777666653 45554 445566666666666677777888776432222
Q ss_pred HHH-HHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEeC--CcccchHHHH
Q 002267 127 IAH-VISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDD--DYGRNGISVL 203 (945)
Q Consensus 127 ~~~-~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~--~~g~~~~~~l 203 (945)
... .+..+ .. ++|+|......+. ..+ .+..++..-+..+++.+...|-++|++|..+. .....-.+.+
T Consensus 83 ~~~~~~~~l-~~-~iPvV~i~~~~~~----~~~---~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf 153 (303)
T 3kke_A 83 FDDDMLAAV-LE-GVPAVTINSRVPG----RVG---SVILDDQKGGGIATEHLITLGHSRIAFISGTAIHDTAQRRKEGY 153 (303)
T ss_dssp CCHHHHHHH-HT-TSCEEEESCCCTT----CCC---EEEECHHHHHHHHHHHHHHTTCCSEEEEESCSSCHHHHHHHHHH
T ss_pred CcHHHHHHH-hC-CCCEEEECCcCCC----CCC---EEEECcHHHHHHHHHHHHHCCCCeEEEEeCCCcCccHHHHHHHH
Confidence 222 33344 44 9999987554332 223 34556666677778888788999999998543 2344557889
Q ss_pred HHHHhhcCcEEEEeecCCCCCChHHHHHHHHhh-----cc--CCceEEEEEcChhhHHHHHHHHHhCCCCCCC-eEEEEe
Q 002267 204 GDALSKKRAKISYKAPFSPGASRSAINSLLVGA-----NL--MESRVFVVHVNPDTGLTIFSVAKSLGMTAGS-YVWIAT 275 (945)
Q Consensus 204 ~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l-----~~--~~~~vivl~~~~~~~~~~~~~a~~~g~~~~~-~~wi~~ 275 (945)
.+++++.|+.+..........+...-...+.++ .+ ..+++|+ +.+...+..+++++++.|+..++ ...++.
T Consensus 154 ~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP~di~vig~ 232 (303)
T 3kke_A 154 LETLASAGLRSEAAWVVDAGWEADAGSAALNTLYRGANLGKPDGPTAVV-VASVNAAVGALSTALRLGLRVPEDLSIVGI 232 (303)
T ss_dssp HHHHHHTTCCCCGGGEEECCSSHHHHHHHHHHHHHHHCTTSTTSCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEEEE
T ss_pred HHHHHHcCCCCCcceEEecCCChHHHHHHHHHhcchhhhcCCCCCcEEE-ECCHHHHHHHHHHHHHcCCCCCCceEEEEE
Confidence 999999997653211111112344444455555 43 3466665 45667788899999999987554 344443
Q ss_pred C
Q 002267 276 D 276 (945)
Q Consensus 276 ~ 276 (945)
|
T Consensus 233 D 233 (303)
T 3kke_A 233 N 233 (303)
T ss_dssp S
T ss_pred c
Confidence 3
No 129
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=97.61 E-value=0.0041 Score=64.70 Aligned_cols=205 Identities=11% Similarity=0.065 Sum_probs=121.3
Q ss_pred EEEEEeccC-CccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-cCChhHHH
Q 002267 52 RIGALFTYD-SVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAIG-PQSSGIAH 129 (945)
Q Consensus 52 ~IG~l~~l~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiG-p~~s~~~~ 129 (945)
+||++.|-. ..+-.....+++-++++. |+++.+ .++..++..-.+....+++++|.+||= |..+....
T Consensus 3 ~Igvi~~~~~~~f~~~~~~gi~~~~~~~--------g~~~~~--~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~ 72 (271)
T 2dri_A 3 TIALVVSTLNNPFFVSLKDGAQKEADKL--------GYNLVV--LDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVG 72 (271)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHH--------TCEEEE--EECTTCHHHHHHHHHHHTTTTEEEEEECCSSTTTTH
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHHHHc--------CcEEEE--eCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHH
Confidence 589988753 333345666777666654 555544 456667666555666777778887763 43333222
Q ss_pred HHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHc--CCeEEEEEEEeCC--cccchHHHHHH
Q 002267 130 VISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYY--GWREVIAIFVDDD--YGRNGISVLGD 205 (945)
Q Consensus 130 ~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~--~w~~v~ii~~d~~--~g~~~~~~l~~ 205 (945)
.....+...++|+|......+ +. +..-.+..++..-+..+++++... |-++|++|..... ....-.+.+.+
T Consensus 73 ~~~~~~~~~~iPvV~i~~~~~---~~--~~~~~V~~D~~~~g~~a~~~L~~~g~g~~~I~~i~g~~~~~~~~~R~~Gf~~ 147 (271)
T 2dri_A 73 NAVKMANQANIPVITLDRQAT---KG--EVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGTSAARERGEGFQQ 147 (271)
T ss_dssp HHHHHHHHTTCCEEEESSCCS---SS--CCSEEEEECHHHHHHHHHHHHHHHHCTTCEEEEEECCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCcEEEecCCCC---CC--ceeEEEecChHHHHHHHHHHHHHHcCCCCeEEEEECCCCCccHhHHHHHHHH
Confidence 234445667999998754322 11 112234456666666677766544 5689999975422 22345678999
Q ss_pred HHhhcCcEEEEeecCCCCCChHHHHHHHHhhcc--CCceEEEEEcChhhHHHHHHHHHhCCCCCCCeEEEEeC
Q 002267 206 ALSKKRAKISYKAPFSPGASRSAINSLLVGANL--MESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIATD 276 (945)
Q Consensus 206 ~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vivl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~ 276 (945)
++++.|+++.....-. .+...-...++++.. ..+++| ++.+...+..++++++++|+ .+...++.|
T Consensus 148 al~~~g~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai-~~~nD~~A~g~~~al~~~g~--~dv~vvGfD 215 (271)
T 2dri_A 148 AVAAHKFNVLASQPAD--FDRIKGLNVMQNLLTAHPDVQAV-FAQNDEMALGALRALQTAGK--SDVMVVGFD 215 (271)
T ss_dssp HHHHHTCEEEEEEECT--TCHHHHHHHHHHHHHHCTTCCEE-EESSHHHHHHHHHHHHHHTC--CSCEEEEEE
T ss_pred HHhcCCCEEEEecCCC--CCHHHHHHHHHHHHHhCCCccEE-EECCCcHHHHHHHHHHHcCC--CCcEEEEec
Confidence 9999998765432111 233333333444322 346664 45667778899999999997 344555443
No 130
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=97.61 E-value=0.0021 Score=67.19 Aligned_cols=205 Identities=11% Similarity=0.011 Sum_probs=126.6
Q ss_pred CceEEEEEEeccC-CccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChh
Q 002267 48 PSSVRIGALFTYD-SVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAIGPQSSG 126 (945)
Q Consensus 48 ~~~i~IG~l~~l~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~ 126 (945)
...-+||+++|-. ..+-.....+++-++++. |+.+.+ .++..++..-.+....++++++.+||-.....
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~ 74 (276)
T 3jy6_A 5 QSSKLIAVIVANIDDYFSTELFKGISSILESR--------GYIGVL--FDANADIEREKTLLRAIGSRGFDGLILQSFSN 74 (276)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHTT--------TCEEEE--EECTTCHHHHHHHHHHHHTTTCSEEEEESSCC
T ss_pred CCCcEEEEEeCCCCchHHHHHHHHHHHHHHHC--------CCEEEE--EeCCCCHHHHHHHHHHHHhCCCCEEEEecCCc
Confidence 3457899999864 333334555555555442 555554 55666776666667777777887776433333
Q ss_pred HHHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEeCC-c--ccchHHHH
Q 002267 127 IAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDD-Y--GRNGISVL 203 (945)
Q Consensus 127 ~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~~-~--g~~~~~~l 203 (945)
......+...++|+|......+ +.. +-.+..++..-+..+++++...|-++|+++..+.. . ...-.+.+
T Consensus 75 --~~~~~~l~~~~iPvV~i~~~~~---~~~---~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~gf 146 (276)
T 3jy6_A 75 --PQTVQEILHQQMPVVSVDREMD---ACP---WPQVVTDNFEAAKAATTAFRQQGYQHVVVLTSELELSRTRQERYRGI 146 (276)
T ss_dssp --HHHHHHHHTTSSCEEEESCCCT---TCS---SCEEECCHHHHHHHHHHHHHTTTCCEEEEEEECSTTCHHHHHHHHHH
T ss_pred --HHHHHHHHHCCCCEEEEecccC---CCC---CCEEEEChHHHHHHHHHHHHHcCCCeEEEEecCCCCCchHHHHHHHH
Confidence 4455666778999998754332 111 23355677777888888888889999999987643 2 24456778
Q ss_pred HHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhcc-CCceEEEEEcChhhHHHHHHHHHhCCCCCCCeEEEE
Q 002267 204 GDALSKKRAKISYKAPFSPGASRSAINSLLVGANL-MESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIA 274 (945)
Q Consensus 204 ~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~-~~~~vivl~~~~~~~~~~~~~a~~~g~~~~~~~wi~ 274 (945)
.+++++.+. +... ..............+.++. .++++|+ +.+...+..++++++++|+..++-+-|+
T Consensus 147 ~~~l~~~~~-~~~~--~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vi 214 (276)
T 3jy6_A 147 LAAAQDVDV-LEVS--ESSYNHSEVHQRLTQLITQNDQKTVAF-ALKERWLLEFFPNLIISGLIDNQTVTAT 214 (276)
T ss_dssp HTTCSEEEE-EEEC--SSSCCHHHHHHHHHHHHHSSSSCEEEE-ESSHHHHHHHSHHHHHSSSCCSSSEEEE
T ss_pred HHHHHhCCc-EEEe--ccccCCcHHHHHHHHHHhcCCCCcEEE-EeCcHHHHHHHHHHHHcCCCCCCcEEEE
Confidence 888887754 2211 1100122234444444433 3566665 4677788899999999998865544443
No 131
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=97.58 E-value=0.0028 Score=65.24 Aligned_cols=199 Identities=11% Similarity=0.024 Sum_probs=125.3
Q ss_pred EEEEEEeccC-CccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChhHHH
Q 002267 51 VRIGALFTYD-SVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAIGPQSSGIAH 129 (945)
Q Consensus 51 i~IG~l~~l~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~~~ 129 (945)
-+||++.|-. ..+-.....+++-++++. |+.+.+ .++..++..-.+....+..+++.+||-.......
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~- 71 (255)
T 1byk_A 3 KVVAIIVTRLDSLSENLAVQTMLPAFYEQ--------GYDPIM--MESQFSPQLVAEHLGVLKRRNIDGVVLFGFTGIT- 71 (255)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHH--------TCEEEE--EECTTCHHHHHHHHHHHHTTTCCEEEEECCTTCC-
T ss_pred CEEEEEeCCCCCccHHHHHHHHHHHHHHc--------CCEEEE--EeCCCcHHHHHHHHHHHHhcCCCEEEEecCcccc-
Confidence 3689998853 333345667777666664 566554 4555666665556666777788776642221111
Q ss_pred HHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEe--C-CcccchHHHHHHH
Q 002267 130 VISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVD--D-DYGRNGISVLGDA 206 (945)
Q Consensus 130 ~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d--~-~~g~~~~~~l~~~ 206 (945)
.+.....++|+|...... +.+-.+..++..-+..+++.+...|.++|+++..+ + .....-.+.+.++
T Consensus 72 --~~~l~~~~~pvV~~~~~~--------~~~~~V~~d~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~~R~~gf~~a 141 (255)
T 1byk_A 72 --EEMLAHWQSSLVLLARDA--------KGFASVCYDDEGAIKILMQRLYDQGHRNISYLGVPHSDVTTGKRRHEAYLAF 141 (255)
T ss_dssp --TTTSGGGSSSEEEESSCC--------SSCEEEEECHHHHHHHHHHHHHHTTCCCEEEECCCTTSTTTTHHHHHHHHHH
T ss_pred --HHHHHhcCCCEEEEcccc--------CCCCEEEEccHHHHHHHHHHHHHcCCCeEEEEecCCCCcccHHHHHHHHHHH
Confidence 123456689999864321 12334556677777778888877899999999854 2 3345567889999
Q ss_pred HhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcChhhHHHHHHHHHhCCCCCCCeEEEEeC
Q 002267 207 LSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIATD 276 (945)
Q Consensus 207 l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~ 276 (945)
+++.|+.+.. +....+..+-...+.++...++++|+. .+...+..+++++++.|+ ++...++.|
T Consensus 142 l~~~g~~~~~---~~~~~~~~~~~~~~~~~l~~~~~ai~~-~~d~~A~g~~~al~~~g~--~di~vig~d 205 (255)
T 1byk_A 142 CKAHKLHPVA---ALPGLAMKQGYENVAKVITPETTALLC-ATDTLALGASKYLQEQRI--DTLQLASVG 205 (255)
T ss_dssp HHHTTCCCEE---ECCCSCHHHHHHHSGGGCCTTCCEEEE-SSHHHHHHHHHHHHHTTC--CSCEEEEEC
T ss_pred HHHcCCCcce---eecCCccchHHHHHHHHhcCCCCEEEE-eChHHHHHHHHHHHHcCC--CcEEEEEeC
Confidence 9999976432 121234444445566655556777654 566778899999999998 444555544
No 132
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=97.57 E-value=0.00081 Score=71.16 Aligned_cols=207 Identities=16% Similarity=0.124 Sum_probs=128.3
Q ss_pred EEEEEEeccC-CccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-cCChh--
Q 002267 51 VRIGALFTYD-SVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAIG-PQSSG-- 126 (945)
Q Consensus 51 i~IG~l~~l~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiG-p~~s~-- 126 (945)
-+||+++|-. ..+-.....+++-++++. |+.+.+ .++..++..-.+....++++++.+||- |..+.
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~ 85 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSEQ--------GYSMLL--TSTNNNPDNERRGLENLLSQHIDGLIVEPTKSALQ 85 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHHT--------TCEEEE--EECTTCHHHHHHHHHHHHHTCCSEEEECCSSTTSC
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHHC--------CCEEEE--EeCCCChHHHHHHHHHHHHCCCCEEEEeccccccc
Confidence 6899999864 334445667777666652 565554 466677777777777888888877764 33221
Q ss_pred -HHHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEeCC-cccchHHHHH
Q 002267 127 -IAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDD-YGRNGISVLG 204 (945)
Q Consensus 127 -~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~~-~g~~~~~~l~ 204 (945)
........+...++|+|......+.. ..+ .+..++..-+..+++++...|.++|+++..... ....-.+.+.
T Consensus 86 ~~~~~~~~~~~~~~iPvV~~~~~~~~~---~~~---~V~~d~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~R~~gf~ 159 (298)
T 3tb6_A 86 TPNIGYYLNLEKNGIPFAMINASYAEL---AAP---SFTLDDVKGGMMAAEHLLSLGHTHMMGIFKADDTQGVKRMNGFI 159 (298)
T ss_dssp CTTHHHHHHHHHTTCCEEEESSCCTTC---SSC---EEEECHHHHHHHHHHHHHHTTCCSEEEEEESSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHhcCCCEEEEecCcCCC---CCC---EEEeCcHHHHHHHHHHHHHCCCCcEEEEcCCCCccHHHHHHHHH
Confidence 23344556677899999875433221 222 345667777788888888889999999986433 3345578899
Q ss_pred HHHhhcCcEEEEeecCCCCCCh--HHHHHHHHhhcc--CC--ceEEEEEcChhhHHHHHHHHHhCCCCCCCeEEEE
Q 002267 205 DALSKKRAKISYKAPFSPGASR--SAINSLLVGANL--ME--SRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIA 274 (945)
Q Consensus 205 ~~l~~~g~~v~~~~~~~~~~~~--~d~~~~l~~l~~--~~--~~vivl~~~~~~~~~~~~~a~~~g~~~~~~~wi~ 274 (945)
+++++.|+.+............ ......+.++.+ .+ +++|+ +.+...+..+++++++.|+..++-+-|.
T Consensus 160 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vv 234 (298)
T 3tb6_A 160 QAHRERELFPSPDMIVTFTTEEKESKLLEKVKATLEKNSKHMPTAIL-CYNDEIALKVIDMLREMDLKVPEDMSIV 234 (298)
T ss_dssp HHHHHTTCCCCGGGEEEECHHHHTTHHHHHHHHHHHHTTTSCCSEEE-CSSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHcCCCCCcceEEEecccchhhhHHHHHHHHHhcCCCCCCeEEE-EeCcHHHHHHHHHHHHcCCCCCCceEEE
Confidence 9999998764321111100000 001222333322 23 67765 4567778899999999998765444433
No 133
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=97.57 E-value=0.00082 Score=71.09 Aligned_cols=208 Identities=11% Similarity=0.013 Sum_probs=125.4
Q ss_pred ceEEEEEEecc-----CCccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-c
Q 002267 49 SSVRIGALFTY-----DSVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAIG-P 122 (945)
Q Consensus 49 ~~i~IG~l~~l-----~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiG-p 122 (945)
..-+||+++|. +..+-.....+++-++++. |+.+.+...++... .......+..++|.+||- |
T Consensus 5 ~s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~~~~~~~---~~~~~~~l~~~~vdGiIi~~ 73 (294)
T 3qk7_A 5 RTDAIALAYPSRPRVLNNSTFLEMISWIGIELGKR--------GLDLLLIPDEPGEK---YQSLIHLVETRRVDALIVAH 73 (294)
T ss_dssp CCCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHT--------TCEEEEEEECTTCC---CHHHHHHHHHTCCSEEEECS
T ss_pred ccceEEEEecCCCccccChhHHHHHHHHHHHHHHC--------CCEEEEEeCCChhh---HHHHHHHHHcCCCCEEEEeC
Confidence 45689999983 2333335566666665553 67777766554212 122233444557777663 2
Q ss_pred CChhHHHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEeCC--cccchH
Q 002267 123 QSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDD--YGRNGI 200 (945)
Q Consensus 123 ~~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~ 200 (945)
..... .....+...++|+|......+ + +.+-.+..++..-+..+++++...|-++|++|..... ....-.
T Consensus 74 ~~~~~--~~~~~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~ 145 (294)
T 3qk7_A 74 TQPED--FRLQYLQKQNFPFLALGRSHL---P---KPYAWFDFDNHAGASLAVKRLLELGHQRIAFVSTDARISYVDQRL 145 (294)
T ss_dssp CCSSC--HHHHHHHHTTCCEEEESCCCC---S---SCCEEEEECHHHHHHHHHHHHHHTTCCCEEEEEESSCCHHHHHHH
T ss_pred CCCCh--HHHHHHHhCCCCEEEECCCCC---C---CCCCEEEcChHHHHHHHHHHHHHCCCceEEEEeCCcccchHHHHH
Confidence 22222 334556678999998754321 1 2233456677777777888888889999999986533 334557
Q ss_pred HHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhcc--CCceEEEEEcChhhHHHHHHHHHhCCCCCCC-eEEEEeC
Q 002267 201 SVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANL--MESRVFVVHVNPDTGLTIFSVAKSLGMTAGS-YVWIATD 276 (945)
Q Consensus 201 ~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vivl~~~~~~~~~~~~~a~~~g~~~~~-~~wi~~~ 276 (945)
+.+.+++++.|+.+..........+..+-...+.++.+ ..+++|+ +.+...+..++++++++|+..++ ...++.|
T Consensus 146 ~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP~di~vig~D 223 (294)
T 3qk7_A 146 QGYVQTMSEAGLMPLAGYLQKADPTRPGGYLAASRLLALEVPPTAII-TDCNMLGDGVASALDKAGLLGGEGISLIAYD 223 (294)
T ss_dssp HHHHHHHHTTTCCCCTTCEEEECSSHHHHHHHHHHHHHSSSCCSEEE-ESSHHHHHHHHHHHHHTTCSSTTSCEEEEET
T ss_pred HHHHHHHHHCCCCCChhHeecCCCCHHHHHHHHHHHHcCCCCCcEEE-ECCHHHHHHHHHHHHHcCCCCCCceEEEeec
Confidence 88999999999764211111111233333444444443 3567665 46777888999999999987654 4455544
No 134
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=97.56 E-value=0.00065 Score=71.95 Aligned_cols=123 Identities=11% Similarity=0.097 Sum_probs=82.8
Q ss_pred CCCCChHHhhc------CCCCeEEe-eCchHH---HHHHHhhccccccceecCCHHHHHHHHhcCCCCCceeEEecchhh
Q 002267 700 SQIEGIDSLIS------STEPIGVQ-DGSFAW---NYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPY 769 (945)
Q Consensus 700 ~~i~~~~dL~~------~~~~v~~~-~~s~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~ 769 (945)
.+++|++||+. ....+|.. .|+..+ ..+.+..++. ...++|....+.+.+|.. |++|+++.....
T Consensus 121 s~~~sl~dL~~~ak~~p~~~~~g~~g~Gs~~hl~~~~l~~~~Gi~-~~~Vpy~G~~~a~~aL~~----G~VD~~~~~~~~ 195 (312)
T 2f5x_A 121 FPPNNIKELAEYVKKNADKISLANAGIGAASHLCGTMLVEALGVN-LLTIPYKGTAPAMNDLLG----KQVDLMCDQTTN 195 (312)
T ss_dssp CSCCSHHHHHHHHHHHGGGCEEEESSTTSHHHHHHHHHHHHHTCC-CEEEECSSHHHHHHHHHT----TSSCEEEEEHHH
T ss_pred CCCCCHHHHHHHHHhCCCceEEeCCCCCcHHHHHHHHHHHHHCCC-eEEeccCChHHHHHHHHc----CCccEEEechHH
Confidence 47999999975 23567765 355332 2333444553 335689999999999999 999999998776
Q ss_pred HHHHhccCCcc-EEEeCc----------cc---------cccceEEEecCCCc--chHHHHHHHHhccccccHHHHHHHh
Q 002267 770 IELFMSKTNCE-FRTVGQ----------EF---------TKSGWGFAFQRDSP--LAIDLSTAILQLSENGDLQKIHNKW 827 (945)
Q Consensus 770 ~~~~~~~~~~~-~~~~~~----------~~---------~~~~~~~~~~k~sp--l~~~i~~~i~~l~e~G~~~~i~~~w 827 (945)
...+++....+ +.+..+ .+ ....++++.|++-| +.+.+++++.++.+++.+++..+++
T Consensus 196 ~~~~i~~g~lr~Lav~~~~r~~~~pdvPt~~E~G~~~~~~~~w~gl~ap~g~p~~vv~~l~~al~~~~~~p~~~~~~~~~ 275 (312)
T 2f5x_A 196 TTQQITSGKVKAYAVTSLKRVPTLPDLPTMDESGYKGFEVGIWHGMWAPKGTPKPVVDKLVKSLQAGLADPKFQERMKQL 275 (312)
T ss_dssp HHHHHHTTSSEEEEECSSSCCTTSTTSCBTTTTTCTTCCCEEEEEEEEETTCCHHHHHHHHHHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHcCCeEEEEEcCccchhhcCCCCCHhhcCCCCeeEEEEEEEEEcCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHC
Confidence 65555542222 222210 00 11236889999976 9999999999999999877665544
No 135
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=97.54 E-value=0.0015 Score=70.94 Aligned_cols=208 Identities=13% Similarity=0.044 Sum_probs=122.7
Q ss_pred ceEEEEEEeccC-CccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChhH
Q 002267 49 SSVRIGALFTYD-SVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAIGPQSSGI 127 (945)
Q Consensus 49 ~~i~IG~l~~l~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~ 127 (945)
..-+||++.|.. ..+-.....+++.++++. |+.+.+ .++..++....+....++.++|.+||-......
T Consensus 65 ~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 134 (348)
T 3bil_A 65 RSNTIGVIVPSLINHYFAAMVTEIQSTASKA--------GLATII--TNSNEDATTMSGSLEFLTSHGVDGIICVPNEEC 134 (348)
T ss_dssp ---CEEEEESCSSSHHHHHHHHHHHHHHHHT--------TCCEEE--EECTTCHHHHHHHHHHHHHTTCSCEEECCCGGG
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHHc--------CCEEEE--EeCCCCHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 456899999853 333345666666666552 555544 456667766666666777778887765333322
Q ss_pred HHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEeCC--cccchHHHHHH
Q 002267 128 AHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDD--YGRNGISVLGD 205 (945)
Q Consensus 128 ~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~l~~ 205 (945)
. .....+...++|+|......+. ....+ .+..++..-+..+++++...|.++|++|..+.. ....-.+.+.+
T Consensus 135 ~-~~~~~l~~~~iPvV~i~~~~~~--~~~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~ 208 (348)
T 3bil_A 135 A-NQLEDLQKQGMPVVLVDRELPG--DSTIP---TATSNPQPGIAAAVELLAHNNALPIGYLSGPMDTSTGRERLEDFKA 208 (348)
T ss_dssp H-HHHHHHHHC-CCEEEESSCCSC--C-CCC---EEEEECHHHHHHHHHHHHHTTCCSEEEECCCTTSHHHHHHHHHHHH
T ss_pred h-HHHHHHHhCCCCEEEEcccCCC--CCCCC---EEEeChHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHHH
Confidence 2 3334455679999987543221 01222 344555556677778877789999999975422 33455788999
Q ss_pred HHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCC-ceEEEEEcChhhHHHHHHHHHhCCCCCCC-eEEEEeC
Q 002267 206 ALSKKRAKISYKAPFSPGASRSAINSLLVGANLME-SRVFVVHVNPDTGLTIFSVAKSLGMTAGS-YVWIATD 276 (945)
Q Consensus 206 ~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~-~~vivl~~~~~~~~~~~~~a~~~g~~~~~-~~wi~~~ 276 (945)
++++.|+..... +....+..+-...++++.+.. + .|++.+...+..+++++++.|+..++ ...++.|
T Consensus 209 al~~~g~~~~~v--~~~~~~~~~~~~~~~~ll~~~~~--ai~~~nD~~A~g~~~al~~~G~~vP~disvvG~D 277 (348)
T 3bil_A 209 ACANSKIGEQLV--FLGGYEQSVGFEGATKLLDQGAK--TLFAGDSMMTIGVIEACHKAGLVIGKDVSVIGFD 277 (348)
T ss_dssp HHHHTTCCCCEE--ECCCSSHHHHHHHHHHHHHTTCS--EEEESSHHHHHHHHHHHHHTTCCBTTTBEEEEES
T ss_pred HHHHcCcCccEE--EcCCCCHHHHHHHHHHHHcCCCC--EEEEcChHHHHHHHHHHHHcCCCCCCCeEEEEeC
Confidence 999998732111 111123333334444543333 5 44466777888999999999987554 3444444
No 136
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=97.52 E-value=0.0034 Score=68.34 Aligned_cols=207 Identities=12% Similarity=0.051 Sum_probs=126.9
Q ss_pred ceEEEEEEeccC-CccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChhH
Q 002267 49 SSVRIGALFTYD-SVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAIGPQSSGI 127 (945)
Q Consensus 49 ~~i~IG~l~~l~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~ 127 (945)
..-+||+++|-. ..+-.....+++-++++. |+.+.+ .++..++..-.+....++.+++.+||-......
T Consensus 69 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~ 138 (355)
T 3e3m_A 69 RSGFVGLLLPSLNNLHFAQTAQSLTDVLEQG--------GLQLLL--GYTAYSPEREEQLVETMLRRRPEAMVLSYDGHT 138 (355)
T ss_dssp --CEEEEEESCSBCHHHHHHHHHHHHHHHHT--------TCEEEE--EECTTCHHHHHHHHHHHHHTCCSEEEEECSCCC
T ss_pred CCCEEEEEeCCCCchHHHHHHHHHHHHHHHC--------CCEEEE--EeCCCChHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 456899999864 222234556666555552 566644 466667777666677777777776653222211
Q ss_pred HHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEeCCc---ccchHHHHH
Q 002267 128 AHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDDY---GRNGISVLG 204 (945)
Q Consensus 128 ~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~~~---g~~~~~~l~ 204 (945)
......+...++|+|...... . .+....+..++..-+..+++.+...|.++|++|..+... ...-.+.+.
T Consensus 139 -~~~~~~l~~~~iPvV~i~~~~---~---~~~~~~V~~D~~~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~~~R~~Gf~ 211 (355)
T 3e3m_A 139 -EQTIRLLQRASIPIVEIWEKP---A---HPIGHTVGFSNERAAYDMTNALLARGFRKIVFLGEKDDDWTRGAARRAGFK 211 (355)
T ss_dssp -HHHHHHHHHCCSCEEEESSCC---S---SCSSEEEECCHHHHHHHHHHHHHHTTCCSEEEEEESSCTTSHHHHHHHHHH
T ss_pred -HHHHHHHHhCCCCEEEECCcc---C---CCCCCEEEeChHHHHHHHHHHHHHCCCCeEEEEccCcccChhHHHHHHHHH
Confidence 133455667899999863221 1 122345566777777778888888899999999875432 345678899
Q ss_pred HHHhhcCcEEEEee-cCCCCCChHHHHHHHHhhcc--CCceEEEEEcChhhHHHHHHHHHhCCCCCCCeEEE
Q 002267 205 DALSKKRAKISYKA-PFSPGASRSAINSLLVGANL--MESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWI 273 (945)
Q Consensus 205 ~~l~~~g~~v~~~~-~~~~~~~~~d~~~~l~~l~~--~~~~vivl~~~~~~~~~~~~~a~~~g~~~~~~~wi 273 (945)
+++++.|+.+.... ......+..+-...+.++.+ ..+++|+ +.+...+..++++++++|+..++-+-|
T Consensus 212 ~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~~G~~vP~disv 282 (355)
T 3e3m_A 212 RAMREAGLNPDQEIRLGAPPLSIEDGVAAAELILQEYPDTDCIF-CVSDMPAFGLLSRLKSIGVAVPEQVSV 282 (355)
T ss_dssp HHHHHTTSCSCCEEEESCSSCCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHHHTCCTTTTCEE
T ss_pred HHHHHCCcCCCccEEEecCCCCHHHHHHHHHHHHcCCCCCcEEE-ECChHHHHHHHHHHHHcCCCCCCceEE
Confidence 99999998643211 11111233333334444332 3577755 467778889999999999876544433
No 137
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=97.52 E-value=0.003 Score=65.96 Aligned_cols=199 Identities=9% Similarity=-0.035 Sum_probs=118.1
Q ss_pred CceEEEEEEeccC-CccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChh
Q 002267 48 PSSVRIGALFTYD-SVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAIGPQSSG 126 (945)
Q Consensus 48 ~~~i~IG~l~~l~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~ 126 (945)
..+.+||++.|-. ..+-.....+++-+.++. |+.+.+.. +..++..-. ++ ++.+||-.....
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~~--~~~~~~~~~----~~---~vdgiI~~~~~~ 68 (277)
T 3cs3_A 6 RQTNIIGVYLADYGGSFYGELLEGIKKGLALF--------DYEMIVCS--GKKSHLFIP----EK---MVDGAIILDWTF 68 (277)
T ss_dssp CCCCEEEEEECSSCTTTHHHHHHHHHHHHHTT--------TCEEEEEE--STTTTTCCC----TT---TCSEEEEECTTS
T ss_pred cCCcEEEEEecCCCChhHHHHHHHHHHHHHHC--------CCeEEEEe--CCCCHHHHh----hc---cccEEEEecCCC
Confidence 3457899999853 333334556665555432 56666543 333322111 01 666655322211
Q ss_pred HHHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEeCC--cccchHHHHH
Q 002267 127 IAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDD--YGRNGISVLG 204 (945)
Q Consensus 127 ~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~l~ 204 (945)
.... ...+...++|+|......+ + +.+..+..++...+..+++++...|.++|++|..+.. ....-.+.+.
T Consensus 69 ~~~~-~~~l~~~~iPvV~~~~~~~---~---~~~~~V~~D~~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~ 141 (277)
T 3cs3_A 69 PTKE-IEKFAERGHSIVVLDRTTE---H---RNIRQVLLDNRGGATQAIEQFVNVGSKKVLLLSGPEKGYDSQERLAVST 141 (277)
T ss_dssp CHHH-HHHHHHTTCEEEESSSCCC---S---TTEEEEEECHHHHHHHHHHHHHHTTCSCEEEEECCTTSHHHHHHHHHHH
T ss_pred CHHH-HHHHHhcCCCEEEEecCCC---C---CCCCEEEeCcHHHHHHHHHHHHHcCCceEEEEeCCccCccHHHHHHHHH
Confidence 1222 3345568999998754322 1 2344566677777777888887789999999986532 3345578889
Q ss_pred HHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccC---CceEEEEEcChhhHHHHHHHHHhCCCCCCCeEEEE
Q 002267 205 DALSKKRAKISYKAPFSPGASRSAINSLLVGANLM---ESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIA 274 (945)
Q Consensus 205 ~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~---~~~vivl~~~~~~~~~~~~~a~~~g~~~~~~~wi~ 274 (945)
+++++.|+++. ...-. .+..+-...+.++.+. ++++|+ +.+...+..+++++++.|+..++-+.+.
T Consensus 142 ~~l~~~g~~~~-~~~~~--~~~~~~~~~~~~~l~~~~~~~~ai~-~~~d~~a~g~~~al~~~g~~vP~di~vv 210 (277)
T 3cs3_A 142 RELTRFGIPYE-IIQGD--FTEPSGYAAAKKILSQPQTEPVDVF-AFNDEMAIGVYKYVAETNYQMGKDIRII 210 (277)
T ss_dssp HHHHHTTCCEE-EEECC--SSHHHHHHHHHHHTTSCCCSSEEEE-ESSHHHHHHHHHHHTTSSCCBTTTEEEE
T ss_pred HHHHHcCCCee-EEeCC--CChhHHHHHHHHHHhcCCCCCcEEE-EcChHHHHHHHHHHHHcCCCCCCcEEEE
Confidence 99999998765 21111 3444444556665544 466665 4566778889999999998765544444
No 138
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=97.52 E-value=0.00052 Score=74.65 Aligned_cols=105 Identities=18% Similarity=0.111 Sum_probs=62.6
Q ss_pred CCCChHHhhcCCCCeEEeeCchHHHHHHH---hhccccc--cceecCCHHHHHHHHhcCCCCCceeEEecchhhHHHHhc
Q 002267 701 QIEGIDSLISSTEPIGVQDGSFAWNYLVD---ELKIAES--RLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMS 775 (945)
Q Consensus 701 ~i~~~~dL~~~~~~v~~~~~s~~~~~l~~---~~~~~~~--~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~ 775 (945)
+|++++||. |++|++..|+.....+.. ..++... +++.+ +..+...+|.+ |++|+++...+..... .
T Consensus 110 ~i~s~~DLk--Gk~I~v~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~-~~~~~~~al~~----G~vDa~~~~~~~~~~~-~ 181 (348)
T 3uif_A 110 TAKSIKDLK--GKKIALHRGRPWELAFSNLLQSEGLTFKDFKIVNV-NPQVGAAALAS----GTVDGFFSLFDSYILE-D 181 (348)
T ss_dssp CCCSGGGGT--TSEEEECTTSTHHHHHHHHHHHTTCCGGGSEEECC-CHHHHHHHHHH----TSSSEEEESTTHHHHH-H
T ss_pred CCCCHHHcC--CCEEEecCCChHHHHHHHHHHHcCCCHHHeEEEEC-CHHHHHHHHHc----CCCCEEEechHHHHHH-h
Confidence 799999997 999999888765443332 3344333 23333 67789999999 8999998887766432 3
Q ss_pred cCCccEEEeCccc---cccceEEEecCC----Cc-chHHHHHHHHh
Q 002267 776 KTNCEFRTVGQEF---TKSGWGFAFQRD----SP-LAIDLSTAILQ 813 (945)
Q Consensus 776 ~~~~~~~~~~~~~---~~~~~~~~~~k~----sp-l~~~i~~~i~~ 813 (945)
+...+.......+ .....+++++++ .| +.+.|.+++.+
T Consensus 182 ~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~a~~~ 227 (348)
T 3uif_A 182 RGVGKIIWSTKTAPVDWKLMGGVWARNDFVKQNPEITQAIVTAYLK 227 (348)
T ss_dssp TTSEEEEEEGGGSCGGGSCCEEEEEEHHHHHHCHHHHHHHHHHHHH
T ss_pred cCCcEEEEeccccCCCCcceeEEEECHHHHHHCHHHHHHHHHHHHH
Confidence 3122222222212 122345666664 44 55555555544
No 139
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=97.50 E-value=0.00019 Score=77.98 Aligned_cols=123 Identities=11% Similarity=0.107 Sum_probs=76.1
Q ss_pred CCCCChHHh-hcCCCCeEEeeCchHHHHH----HHhhcccc--ccceecCCHHHHHHHHhcCCCCCceeEEecchhhHHH
Q 002267 700 SQIEGIDSL-ISSTEPIGVQDGSFAWNYL----VDELKIAE--SRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIEL 772 (945)
Q Consensus 700 ~~i~~~~dL-~~~~~~v~~~~~s~~~~~l----~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~ 772 (945)
.+|++++|| . |++||+..++....++ ....++.. .+++.+ +..+...+|.+ |++|+++...++...
T Consensus 143 s~I~s~~DL~k--Gk~i~v~~~~s~~~~~~~~~l~~~Gl~~~dv~~~~~-~~~~~~~al~~----G~vDa~~~~~p~~~~ 215 (341)
T 3un6_A 143 MHLNEFNNNGD--DYHFGIPHRYSTHYLLLEELRKQLKIKPGHFSYHEM-SPAEMPAALSE----HRITGYSVAEPFGAL 215 (341)
T ss_dssp CCGGGCCSSSS--CEEEEESCSSSHHHHHHHHHHHHTTCCTTSEEEEEC-CGGGHHHHHHT----TSCSEEEEETTHHHH
T ss_pred CCCCCHHHhCC--CCEEEECCCCCHHHHHHHHHHHHcCCCHHHeEEEEc-ChHHHHHHHHc----CCCCEEEecCCHHHH
Confidence 368899999 5 8999998754333321 12344432 344555 56788899998 899999999888877
Q ss_pred HhccCCccEEEeCccc-ccc-ceEEEecCC----Cc-----chHHHHHHHHhccccccHHHHHHHhcC
Q 002267 773 FMSKTNCEFRTVGQEF-TKS-GWGFAFQRD----SP-----LAIDLSTAILQLSENGDLQKIHNKWLT 829 (945)
Q Consensus 773 ~~~~~~~~~~~~~~~~-~~~-~~~~~~~k~----sp-----l~~~i~~~i~~l~e~G~~~~i~~~w~~ 829 (945)
...+...+.......+ ... ...++++++ .| +...+++++..+.+++...++..+|+.
T Consensus 216 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~a~~~a~~~~~~~~~~~~~~~~~~~ 283 (341)
T 3un6_A 216 GEKLGKGKTLKHGDDVIPDAYCCVLVLRGELLDQHKDVAQAFVQDYKKSGFKMNDRKQSVDIMTHHFK 283 (341)
T ss_dssp HHHSSCCEEEEEGGGTSTTCCCEEEEECHHHHHHCHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHSS
T ss_pred HHhcCCeEEEEeccccCCCCceEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHhC
Confidence 6655233332222222 222 245666553 44 556666777777777654466677765
No 140
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=97.48 E-value=0.0016 Score=70.02 Aligned_cols=205 Identities=7% Similarity=-0.055 Sum_probs=127.9
Q ss_pred eEEEEEEeccC-CccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEE-ccCChhH
Q 002267 50 SVRIGALFTYD-SVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAI-GPQSSGI 127 (945)
Q Consensus 50 ~i~IG~l~~l~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aii-Gp~~s~~ 127 (945)
..+||+++|-. ..+-.....+++-++++. |+++. +.++..++..-.+....++.+++.+|| .|..+..
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~ 72 (330)
T 3uug_A 3 KGSVGIAMPTKSSARWIDDGNNIVKQLQEA--------GYKTD--LQYADDDIPNQLSQIENMVTKGVKVLVIASIDGTT 72 (330)
T ss_dssp CCEEEEEECCSSSTHHHHHHHHHHHHHHHT--------TCEEE--EEECTTCHHHHHHHHHHHHHHTCSEEEECCSSGGG
T ss_pred CcEEEEEeCCCcchHHHHHHHHHHHHHHHc--------CCEEE--EeeCCCCHHHHHHHHHHHHHcCCCEEEEEcCCchh
Confidence 46899999864 334445667777776663 55554 445777888878888888888888776 4544444
Q ss_pred HHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHH-------cCCeEEEEEEEeC--Ccccc
Q 002267 128 AHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEY-------YGWREVIAIFVDD--DYGRN 198 (945)
Q Consensus 128 ~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~-------~~w~~v~ii~~d~--~~g~~ 198 (945)
.......+...++|+|.+....+.. . +....+..++...+..+++++.. .|.++|+++..+. .....
T Consensus 73 ~~~~~~~~~~~giPvV~~~~~~~~~--~--~~~~~V~~D~~~~g~~a~~~l~~~~~~~~~~G~~~i~~i~g~~~~~~~~~ 148 (330)
T 3uug_A 73 LSDVLKQAGEQGIKVIAYDRLIRNS--G--DVSYYATFDNFQVGVLQATSITDKLGLKDGKGPFNIELFGGSPDDNNAFF 148 (330)
T ss_dssp GHHHHHHHHHTTCEEEEESSCCCSC--T--TCCEEEEECHHHHHHHHHHHHHHHHTGGGTCCCEEEEECBCCTTCHHHHH
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCC--C--ceeEEEEeCHHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCCchHHH
Confidence 4555666778899999875543321 1 12234455677777777777755 6888999996432 22344
Q ss_pred hHHHHHHHHhhc---C-cEEEEee-----cCCCCCChHHHHHHHHhhcc-----CCceEEEEEcChhhHHHHHHHHHhCC
Q 002267 199 GISVLGDALSKK---R-AKISYKA-----PFSPGASRSAINSLLVGANL-----MESRVFVVHVNPDTGLTIFSVAKSLG 264 (945)
Q Consensus 199 ~~~~l~~~l~~~---g-~~v~~~~-----~~~~~~~~~d~~~~l~~l~~-----~~~~vivl~~~~~~~~~~~~~a~~~g 264 (945)
-.+.+.+++++. | +++.... ......+...-...+.++.. .++++|+ +.+...+..++++++++|
T Consensus 149 R~~Gf~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ai~-~~nd~~A~g~~~al~~~g 227 (330)
T 3uug_A 149 FYDGAMSVLKPYIDSGKLVVKSGQMGMDKVGTLRWDPATAQARMDNLLSAYYTDAKVDAVL-SPYDGLSIGIISSLKGVG 227 (330)
T ss_dssp HHHHHHHHHHHHHHHTSEECTTCCCSHHHHBCGGGCHHHHHHHHHHHHHHHCSSSCCCEEE-CSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhccccCceEEeecccccccccCCCCCHHHHHHHHHHHHHhcCCCCCeEEEE-ECCCchHHHHHHHHHHcC
Confidence 567888888876 3 5543211 00111222233333333332 4566654 456777889999999999
Q ss_pred CCCCC
Q 002267 265 MTAGS 269 (945)
Q Consensus 265 ~~~~~ 269 (945)
+..++
T Consensus 228 ~~vP~ 232 (330)
T 3uug_A 228 YGTKD 232 (330)
T ss_dssp CSSSS
T ss_pred CCCCC
Confidence 87653
No 141
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=97.47 E-value=0.001 Score=70.20 Aligned_cols=123 Identities=14% Similarity=0.139 Sum_probs=82.2
Q ss_pred CCCCChHHhhc------CCCCeEEe-eCchHH---HHHHHhhccccccceecCCHHHHHHHHhcCCCCCceeEEecchhh
Q 002267 700 SQIEGIDSLIS------STEPIGVQ-DGSFAW---NYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPY 769 (945)
Q Consensus 700 ~~i~~~~dL~~------~~~~v~~~-~~s~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~ 769 (945)
.+++|++||+. ....+|.. .|+..+ ..+.+..++. ...++|....+.+.+|.. |++|+.+.....
T Consensus 112 s~~~sl~dL~~~ak~~p~~~~~g~~g~Gs~~hl~~~~l~~~~G~~-~~~Vpy~g~~~a~~al~~----G~vD~~~~~~~~ 186 (301)
T 2qpq_A 112 SKYKTLGELMAAAKQTNTQVTYGSCGNGTPQHLAGELLNVSAKTH-MVHVPYKGCGPALNDVLG----SQIGLAVVTASS 186 (301)
T ss_dssp CSCCSHHHHHHHTCSSSCCCEEEESSTTSHHHHHHHHHHHHHTCC-CEEEECSSHHHHHHHHHT----TSSSCEEEEHHH
T ss_pred CCCCCHHHHHHHHHhCCCceEEecCCCCcHHHHHHHHHHHHhCCC-eEEeccCChHHHHHHHHC----CCccEEEEcHHH
Confidence 47999999975 12356655 355333 2333344553 335689999999999999 999999988776
Q ss_pred HHHHhccCCcc-EEEeCc----------c--------c-cccceEEEecCCCc--chHHHHHHHHhccccccHHHHHHHh
Q 002267 770 IELFMSKTNCE-FRTVGQ----------E--------F-TKSGWGFAFQRDSP--LAIDLSTAILQLSENGDLQKIHNKW 827 (945)
Q Consensus 770 ~~~~~~~~~~~-~~~~~~----------~--------~-~~~~~~~~~~k~sp--l~~~i~~~i~~l~e~G~~~~i~~~w 827 (945)
...+++....+ +.+..+ . + ....++++.|++-| +.+.+++++.++.+++.+++..+++
T Consensus 187 ~~~~i~~g~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~g~p~~vv~~l~~al~~~~~~~~~~~~~~~~ 266 (301)
T 2qpq_A 187 AIPFIKAGKLQALAVTSKERSALLPEVPTVAEQGVAGYELNQWHGLLVPGATPMAVRQKLYDGIAKVMQRDDVQKKLADL 266 (301)
T ss_dssp HHHHHHTTSEEEEEECSSSCCTTCTTSCBSGGGTCTTCCCEEEEEEEEETTCCHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhcCCeEEEEEcCCccccccCCCCChHHhCCCceEEEeEEEEEecCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHC
Confidence 65555542222 222111 0 1 11246888999976 9999999999999999887766655
No 142
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=97.45 E-value=0.011 Score=62.10 Aligned_cols=213 Identities=12% Similarity=-0.006 Sum_probs=123.2
Q ss_pred EEEEEeccC-CccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-cCChhHHH
Q 002267 52 RIGALFTYD-SVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAIG-PQSSGIAH 129 (945)
Q Consensus 52 ~IG~l~~l~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiG-p~~s~~~~ 129 (945)
+||++.|-. ..+-.....+++.+.++. |+.+.+....+..++..-.+....++.++|.+||= |.......
T Consensus 3 ~Igvi~~~~~~~f~~~~~~gi~~~a~~~--------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~ 74 (288)
T 1gud_A 3 EYAVVLKTLSNPFWVDMKKGIEDEAKTL--------GVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLV 74 (288)
T ss_dssp EEEEEESCSSSHHHHHHHHHHHHHHHHH--------TCCEEEEECSSTTCHHHHHHHHHHHHTSSEEEEEECCSSSSTTH
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHHHHc--------CCEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHH
Confidence 689998753 333345666777666664 45554432116667766666666777788888763 43332211
Q ss_pred HHHHhhcccCccEEecccCCCCCC-C-CCCCceEEecCChhHHHHHHHHHHHHc-C--CeEEEEEEEeCCc--ccchHHH
Q 002267 130 VISHVVNELNVPLLSFGATDPTLT-S-LQYPYFLRTTQSDYYQMHAVADLVEYY-G--WREVIAIFVDDDY--GRNGISV 202 (945)
Q Consensus 130 ~va~~~~~~~iP~Is~~a~~~~ls-~-~~~p~~~r~~p~d~~~~~ai~~~l~~~-~--w~~v~ii~~d~~~--g~~~~~~ 202 (945)
.....+...++|+|......+... . ..-++.-.+..++..-+..+++++... | -++|++|..+... ...-.+.
T Consensus 75 ~~~~~~~~~~iPvV~~~~~~~~~~~~~~~~~~~~~V~~D~~~~g~~a~~~L~~~~G~~~~~I~~i~g~~~~~~~~~R~~G 154 (288)
T 1gud_A 75 MPVARAWKKGIYLVNLDEKIDMDNLKKAGGNVEAFVTTDNVAVGAKGASFIIDKLGAEGGEVAIIEGKAGNASGEARRNG 154 (288)
T ss_dssp HHHHHHHHTTCEEEEESSCCCHHHHHHTTCCCSEEEECCHHHHHHHHHHHHHHHHGGGCEEEEEEECSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCCeEEEECCCCCcccccccCCceeEEECCChHHHHHHHHHHHHHHhCCCCCEEEEEeCCCCCchHhHHHHH
Confidence 223444567999998654221100 0 000110234566666677777776555 7 8999999854322 2344678
Q ss_pred HHHHHhhc-CcEEEEeecCCCCCChHHHHHHHHhhcc--CCceEEEEEcChhhHHHHHHHHHhCCCCCCCeEEEEeC
Q 002267 203 LGDALSKK-RAKISYKAPFSPGASRSAINSLLVGANL--MESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIATD 276 (945)
Q Consensus 203 l~~~l~~~-g~~v~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vivl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~ 276 (945)
+++++++. |+++.....-. .+...-...++++.+ ..+++|+ +.+...+..++++++++|+. ++...++.|
T Consensus 155 f~~al~~~~g~~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~~G~~-~dv~vvGfD 227 (288)
T 1gud_A 155 ATEAFKKASQIKLVASQPAD--WDRIKALDVATNVLQRNPNIKAIY-CANDTMAMGVAQAVANAGKT-GKVLVVGTD 227 (288)
T ss_dssp HHHHHHTCTTEEEEEEEECT--TCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHHTTCT-TTSEEEEES
T ss_pred HHHHHHhCCCcEEEEeecCC--ccHHHHHHHHHHHHHhCCCceEEE-ECCCchHHHHHHHHHhcCCC-CCeEEEEeC
Confidence 89999988 88765432211 233333334444332 3466654 45667788999999999985 445555544
No 143
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=97.43 E-value=0.0041 Score=67.21 Aligned_cols=206 Identities=11% Similarity=-0.005 Sum_probs=127.2
Q ss_pred CceEEEEEEeccC-CccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-cCCh
Q 002267 48 PSSVRIGALFTYD-SVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAIG-PQSS 125 (945)
Q Consensus 48 ~~~i~IG~l~~l~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiG-p~~s 125 (945)
...-+||+++|-. ..+-.....|++-++++. |+.+. +.++..++..-.+....++.++|.+||= |...
T Consensus 60 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~ 129 (339)
T 3h5o_A 60 AKSRTVLVLIPSLANTVFLETLTGIETVLDAA--------GYQML--IGNSHYDAGQELQLLRAYLQHRPDGVLITGLSH 129 (339)
T ss_dssp ---CEEEEEESCSTTCTTHHHHHHHHHHHHHT--------TCEEE--EEECTTCHHHHHHHHHHHHTTCCSEEEEECSCC
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHC--------CCEEE--EEeCCCChHHHHHHHHHHHcCCCCEEEEeCCCC
Confidence 3456899999864 333345667777666663 56654 4567777777777777777787776653 2222
Q ss_pred hHHHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEeC-CcccchHHHHH
Q 002267 126 GIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDD-DYGRNGISVLG 204 (945)
Q Consensus 126 ~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~-~~g~~~~~~l~ 204 (945)
.. .....+...++|+|......+ . +.. .+..++..-+..+++.+...|.++|++|..+. .....-.+.+.
T Consensus 130 ~~--~~~~~l~~~~iPvV~~~~~~~----~--~~~-~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~R~~Gf~ 200 (339)
T 3h5o_A 130 AE--PFERILSQHALPVVYMMDLAD----D--GRC-CVGFSQEDAGAAITRHLLSRGKRRIGFLGAQLDERVMKRLDGYR 200 (339)
T ss_dssp CT--THHHHHHHTTCCEEEEESCCS----S--SCC-EEECCHHHHHHHHHHHHHHTTCCSEEEEEESCCHHHHHHHHHHH
T ss_pred CH--HHHHHHhcCCCCEEEEeecCC----C--CCe-EEEECHHHHHHHHHHHHHHCCCCeEEEEeCCCCccHHHHHHHHH
Confidence 11 334556678999998643211 1 222 55667777777788888888999999998653 23344567889
Q ss_pred HHHhhcCcEEEE-eecCCCCCChHHHHHHHHhhcc--CCceEEEEEcChhhHHHHHHHHHhCCCCCCCeEEE
Q 002267 205 DALSKKRAKISY-KAPFSPGASRSAINSLLVGANL--MESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWI 273 (945)
Q Consensus 205 ~~l~~~g~~v~~-~~~~~~~~~~~d~~~~l~~l~~--~~~~vivl~~~~~~~~~~~~~a~~~g~~~~~~~wi 273 (945)
+++++.|+.... ........+...-...+.++.+ .++++|+ +.+...+..++++++++|+..++-+-+
T Consensus 201 ~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~~G~~vP~disv 271 (339)
T 3h5o_A 201 AALDAADCRDAGLEWLDPQPSSMQMGADMLDRALAERPDCDALF-CCNDDLAIGALARSQQLGIAVPERLAI 271 (339)
T ss_dssp HHHHHTTCCCGGGEEEECSCCCHHHHHHHHHHHHHHCTTCCEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHHCCCCCCChheEecCCCCHHHHHHHHHHHHcCCCCCcEEE-ECChHHHHHHHHHHHHcCCCCCCCEEE
Confidence 999999872110 0011111233333344444432 3577765 466778889999999999876554433
No 144
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=97.42 E-value=0.00083 Score=71.21 Aligned_cols=123 Identities=11% Similarity=0.074 Sum_probs=82.5
Q ss_pred CCCCChHHhhc------CCCCeEEe-eCchHH---HHHHHhhccccccceecCCHHHHHHHHhcCCCCCceeEEecchhh
Q 002267 700 SQIEGIDSLIS------STEPIGVQ-DGSFAW---NYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPY 769 (945)
Q Consensus 700 ~~i~~~~dL~~------~~~~v~~~-~~s~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~ 769 (945)
.+++|++||+. ....+|.. .|+... ..+.+..++. ...++|....+.+.+|.. |++|+.+.....
T Consensus 125 s~~~tl~dL~~~ak~~p~~~~~g~~g~Gs~~hl~~~~l~~~~Gi~-~~~Vpy~G~~~a~~al~~----G~vD~~~~~~~~ 199 (314)
T 2dvz_A 125 FPAKDFKGFLEELKKNPGKYSYGSSGTCGVLHLMGESFKMATGTD-IVHVPYKGSGPAVADAVG----GQIELIFDNLPS 199 (314)
T ss_dssp SSCSSHHHHHHHHHTSTTTCEEEESCTTSHHHHHHHHHHHHHTCC-CEEEECSSHHHHHHHHHH----TSSSEEEEEHHH
T ss_pred CCCCCHHHHHHHHHhCCCcEEEeCCCCCcHHHHHHHHHHHHhCCC-eEEcccCCHHHHHHHHHc----CCceEEEEcHHH
Confidence 47999999975 12456665 355322 3333445553 335689999999999999 999999998776
Q ss_pred HHHHhccCCcc-EEEeCc----------c--------cc-ccceEEEecCCCc--chHHHHHHHHhccccccHHHHHHHh
Q 002267 770 IELFMSKTNCE-FRTVGQ----------E--------FT-KSGWGFAFQRDSP--LAIDLSTAILQLSENGDLQKIHNKW 827 (945)
Q Consensus 770 ~~~~~~~~~~~-~~~~~~----------~--------~~-~~~~~~~~~k~sp--l~~~i~~~i~~l~e~G~~~~i~~~w 827 (945)
...+++....+ +.+..+ . +. ...++++.|++-| +.+.+++++.++.+++.+++..+++
T Consensus 200 ~~~~i~~g~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~g~p~~vv~~l~~al~~~~~~p~~~~~~~~~ 279 (314)
T 2dvz_A 200 SMPQIQAGKLRAMAIAWPTRIDAIKDVPTFADAGFPVLNQPVWYGLLAPKGTPMDVVNKLRDAAVVALKDPKVIKALDDQ 279 (314)
T ss_dssp HHHHHHTTSSEEEEEESSSCCGGGTTSCBTTTTTCGGGCCCEEEEEEEETTCCHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHcCCEEEEEecCccccccCCCCCCHHhcCCCceEEeEEEEEEEcCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHC
Confidence 65555542222 222211 0 10 1236888999976 9999999999999999887765554
No 145
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=97.34 E-value=0.0015 Score=68.37 Aligned_cols=200 Identities=9% Similarity=0.048 Sum_probs=117.8
Q ss_pred ceEEEEEEeccC-CccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChhH
Q 002267 49 SSVRIGALFTYD-SVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAIGPQSSGI 127 (945)
Q Consensus 49 ~~i~IG~l~~l~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~ 127 (945)
..-+||+++|-. ..+-.....+++-++++. |+++. +.++..++..-.+....++.+++.+||-...+
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~--------g~~~~--~~~~~~~~~~~~~~~~~l~~~~~dgiIi~~~~-- 74 (277)
T 3e61_A 7 KSKLIGLLLPDMSNPFFTLIARGVEDVALAH--------GYQVL--IGNSDNDIKKAQGYLATFVSHNCTGMISTAFN-- 74 (277)
T ss_dssp ---CEEEEESCTTSHHHHHHHHHHHHHHHHT--------TCCEE--EEECTTCHHHHHHHHHHHHHTTCSEEEECGGG--
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHC--------CCEEE--EEeCCCCHHHHHHHHHHHHhCCCCEEEEecCC--
Confidence 456799999863 333345566666666553 45554 45666677776667777777888877653322
Q ss_pred HHHHHH-hhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEeC--CcccchHHHHH
Q 002267 128 AHVISH-VVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDD--DYGRNGISVLG 204 (945)
Q Consensus 128 ~~~va~-~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~--~~g~~~~~~l~ 204 (945)
..... .+...++|+|.+....+.. . .+..++...+..+++++...|.++|+++..+. .....-.+.+.
T Consensus 75 -~~~~~~~l~~~~iPvV~~~~~~~~~-----~---~V~~D~~~~g~~a~~~L~~~G~~~i~~i~~~~~~~~~~~R~~gf~ 145 (277)
T 3e61_A 75 -ENIIENTLTDHHIPFVFIDRINNEH-----N---GISTNHFKGGQLQAEVVRKGKGKNVLIVHENLLIDAFHQRVQGIK 145 (277)
T ss_dssp -HHHHHHHHHHC-CCEEEGGGCC-----------------HHHHHHHHHHHHHHTTCCSEEEEESCTTSHHHHHHHHHHH
T ss_pred -hHHHHHHHHcCCCCEEEEeccCCCC-----C---eEEechHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHH
Confidence 22244 5667799999876543211 1 45666777777788888888999999998543 23445578899
Q ss_pred HHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcChhhHHHHHHHHHhCCCCCCCeEEEE
Q 002267 205 DALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIA 274 (945)
Q Consensus 205 ~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~~~~~~~~~~a~~~g~~~~~~~wi~ 274 (945)
+++++.|+.+.. .... ..+..+....+.+ ..++++|+. .+...+..++++++++|+..++-+-|.
T Consensus 146 ~~l~~~~~~~~~-~~~~-~~~~~~~~~~l~~--~~~~~ai~~-~~d~~a~g~~~al~~~g~~vP~di~vi 210 (277)
T 3e61_A 146 YILDQQRIDYKM-LEAT-LLDNDKKFIDLIK--ELSIDSIIC-SNDLLAINVLGIVQRYHFKVPAEIQII 210 (277)
T ss_dssp HHHHC---CEEE-EEGG-GGGSHHHHHHHHH--HHTCCEEEE-SSHHHHHHHHHHHHHTTCCTTTTCEEE
T ss_pred HHHHHcCCCccc-eecC-CCCHHHHHHHhhc--CCCCCEEEE-CCcHHHHHHHHHHHHcCCCCCCceEEE
Confidence 999999987654 1111 1122222222222 245677654 567778889999999998765444333
No 146
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=97.32 E-value=0.0085 Score=63.95 Aligned_cols=206 Identities=10% Similarity=0.006 Sum_probs=113.8
Q ss_pred ceEEEEEEecc---CC-ccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCC
Q 002267 49 SSVRIGALFTY---DS-VIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAIGPQS 124 (945)
Q Consensus 49 ~~i~IG~l~~l---~~-~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~ 124 (945)
++.+||+++|. +. .+-.....|++.+.++. |+++.+. ++..+.. ..+....++++++.+||....
T Consensus 3 ~~~~Ig~v~~~g~~~d~~f~~~~~~Gi~~~~~~~--------g~~~~~~--~~~~~~~-~~~~l~~l~~~~~dgIi~~~~ 71 (318)
T 2fqx_A 3 GDFVVGMVTDSGDIDDKSFNQQVWEGISRFAQEN--------NAKCKYV--TASTDAE-YVPSLSAFADENMGLVVACGS 71 (318)
T ss_dssp CCCEEEEEESSSCTTSSSHHHHHHHHHHHHHHHT--------TCEEEEE--ECCSGGG-HHHHHHHHHHTTCSEEEEEST
T ss_pred CCcEEEEEEcCCCCCCccHHHHHHHHHHHHHHHh--------CCeEEEE--eCCCHHH-HHHHHHHHHHcCCCEEEECCh
Confidence 45789999972 22 33334556666555553 5555543 3322222 244566777778887776432
Q ss_pred hhHHHHHHHhhccc-CccEEecccCCCCCCCCCCCceEEecCChhHHHHHHH----HHHHHcCC-eEEEEEEEe-CCccc
Q 002267 125 SGIAHVISHVVNEL-NVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVA----DLVEYYGW-REVIAIFVD-DDYGR 197 (945)
Q Consensus 125 s~~~~~va~~~~~~-~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~----~~l~~~~w-~~v~ii~~d-~~~g~ 197 (945)
.. ...+..++..+ ++|++......+ . .+++-.... |..++..++ ..+...|. ++|++|... .....
T Consensus 72 ~~-~~~~~~~a~~~p~~p~v~id~~~~---~--~~~~~~v~~-d~~~~~~lag~~a~~l~~~Gh~r~Ig~i~g~~~~~~~ 144 (318)
T 2fqx_A 72 FL-VEAVIETSARFPKQKFLVIDAVVQ---D--RDNVVSAVF-GQNEGSFLVGVAAALKAKEAGKSAVGFIVGMELGMMP 144 (318)
T ss_dssp TT-HHHHHHHHHHCTTSCEEEESSCCC---S--CTTEEEEEE-CHHHHHHHHHHHHHHHHHHTTCCEEEEEESCCSTTTH
T ss_pred hH-HHHHHHHHHHCCCCEEEEEcCccC---C--CCCEEEEEe-chHHHHHHHHHHHHHHhccCCCcEEEEEeCcccHHHH
Confidence 21 12244555443 899987643221 0 123322333 444554443 55656676 899999743 23334
Q ss_pred chHHHHHHHHhhcCcEEEEeecCCCCC-ChHHHHHHHHhhccCCceEEEEEcChhhHHHHHHHHHhCCCCCCCeEEEE
Q 002267 198 NGISVLGDALSKKRAKISYKAPFSPGA-SRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIA 274 (945)
Q Consensus 198 ~~~~~l~~~l~~~g~~v~~~~~~~~~~-~~~d~~~~l~~l~~~~~~vivl~~~~~~~~~~~~~a~~~g~~~~~~~wi~ 274 (945)
.....+.+.+++.|..+.....+.... +...-....+++.+.++++|+. .....+..++++++++|+. +.-+++.
T Consensus 145 ~r~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~a~~ll~~~~daI~~-~~d~~a~Gv~~a~~e~g~~-P~dv~vi 220 (318)
T 2fqx_A 145 LFEAGFEAGVKAVDPDIQVVVEVANTFSDPQKGQALAAKLYDSGVNVIFQ-VAGGTGNGVIKEARDRRLN-GQDVWVI 220 (318)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEECSCSSCHHHHHHHHHHHHHTTCCEEEE-ECGGGHHHHHHHHHHHHHT-TCCCEEE
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEccCccCHHHHHHHHHHHHHCCCcEEEE-CCCCCchHHHHHHHhhhhc-cCCcEEE
Confidence 557888899988876432222222111 2233334445554557887664 5556677888999998877 4434443
No 147
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=97.31 E-value=0.0042 Score=65.92 Aligned_cols=206 Identities=11% Similarity=0.063 Sum_probs=126.4
Q ss_pred CceEEEEEEecc------CCccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc
Q 002267 48 PSSVRIGALFTY------DSVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAIG 121 (945)
Q Consensus 48 ~~~i~IG~l~~l------~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiG 121 (945)
...-+||+++|- +..+-.....+++-++++. |+++.+ .++..++..-.+....+.++++.+||-
T Consensus 20 ~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdgiIi 89 (305)
T 3huu_A 20 NKTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVR--------GYSTRM--TVSENSGDLYHEVKTMIQSKSVDGFIL 89 (305)
T ss_dssp -CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHH--------TCEEEE--CCCSSHHHHHHHHHHHHHTTCCSEEEE
T ss_pred CCCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHC--------CCEEEE--EeCCCChHHHHHHHHHHHhCCCCEEEE
Confidence 345789999997 2333345667777666664 555554 555556555555555666778887663
Q ss_pred -cCChhHHHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEeCC--cccc
Q 002267 122 -PQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDD--YGRN 198 (945)
Q Consensus 122 -p~~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~ 198 (945)
|..... .....+...++|+|...... .. +.+..+..++..-+..+++.+...|-++|++|..+.. ....
T Consensus 90 ~~~~~~~--~~~~~l~~~~iPvV~i~~~~---~~---~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~ 161 (305)
T 3huu_A 90 LYSLKDD--PIEHLLNEFKVPYLIVGKSL---NY---ENIIHIDNDNIDAAYQLTQYLYHLGHRHILFLQESGHYAVTED 161 (305)
T ss_dssp SSCBTTC--HHHHHHHHTTCCEEEESCCC---SS---TTCCEEECCHHHHHHHHHHHHHHTTCCSEEEEEESSCBHHHHH
T ss_pred eCCcCCc--HHHHHHHHcCCCEEEECCCC---cc---cCCcEEEeCHHHHHHHHHHHHHHCCCCeEEEEcCCcccchhHH
Confidence 322221 34455667899999865432 11 2223456667777777888888889999999986543 2345
Q ss_pred hHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhh-cc--CCceEEEEEcChhhHHHHHHHHHhCCCCCCC-eEEEE
Q 002267 199 GISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGA-NL--MESRVFVVHVNPDTGLTIFSVAKSLGMTAGS-YVWIA 274 (945)
Q Consensus 199 ~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l-~~--~~~~vivl~~~~~~~~~~~~~a~~~g~~~~~-~~wi~ 274 (945)
-.+.+.+++++.|+.+.. .+. .+.+.-...+.++ .+ .++++|+ +.+...+..++++++++|+..++ ...++
T Consensus 162 R~~Gf~~~l~~~g~~~~~--~~~--~~~~~~~~~~~~~~l~~~~~~~ai~-~~nd~~A~g~~~al~~~g~~vP~di~vig 236 (305)
T 3huu_A 162 RSVGFKQYCDDVKISNDC--VVI--KSMNDLRDFIKQYCIDASHMPSVII-TSDVMLNMQLLNVLYEYQLRIPEDIQTAT 236 (305)
T ss_dssp HHHHHHHHHHHTTCCCCE--EEE--CSHHHHHHHC--------CCCSEEE-ESSHHHHHHHHHHHHHTTCCTTTTCEEEE
T ss_pred HHHHHHHHHHHcCCCccc--EEe--cCcHHHHHHHHHhhhcCCCCCCEEE-ECChHHHHHHHHHHHHcCCCCCcceEEEE
Confidence 578899999999986543 111 1111123344444 22 3567765 46777888999999999987554 44444
Q ss_pred eC
Q 002267 275 TD 276 (945)
Q Consensus 275 ~~ 276 (945)
.|
T Consensus 237 ~D 238 (305)
T 3huu_A 237 FN 238 (305)
T ss_dssp ES
T ss_pred EC
Confidence 44
No 148
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=97.29 E-value=0.0052 Score=68.39 Aligned_cols=211 Identities=10% Similarity=0.089 Sum_probs=127.2
Q ss_pred CCCceEEEEEEeccCCccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCCh
Q 002267 46 SRPSSVRIGALFTYDSVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAIGPQSS 125 (945)
Q Consensus 46 ~~~~~i~IG~l~~l~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s 125 (945)
.....-+||+++|.+..+-.....|++-++++. |+.+.+...++.. +....+..++|.+||-...
T Consensus 21 ~~~~s~~Igvv~~~~~~f~~~l~~gi~~~a~~~--------g~~~~i~~~~~~~------~~i~~l~~~~vDGiIi~~~- 85 (412)
T 4fe7_A 21 MFTKRHRITLLFNANKAYDRQVVEGVGEYLQAS--------QSEWDIFIEEDFR------ARIDKIKDWLGDGVIADFD- 85 (412)
T ss_dssp CCCCCEEEEEECCTTSHHHHHHHHHHHHHHHHH--------TCCEEEEECC-CC--------------CCCSEEEEETT-
T ss_pred CCCCCceEEEEeCCcchhhHHHHHHHHHHHHhc--------CCCeEEEecCCcc------chhhhHhcCCCCEEEEecC-
Confidence 345678999999976655556777888777765 4556555433321 1234455667877775322
Q ss_pred hHHHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEeCCc----ccchHH
Q 002267 126 GIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDDY----GRNGIS 201 (945)
Q Consensus 126 ~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~~~----g~~~~~ 201 (945)
.......+...++|+|......+... ..+.+-.+..++..-+..+++.+...|-++|++|...... ...-.+
T Consensus 86 --~~~~~~~l~~~~iPvV~i~~~~~~~~--~~~~~~~V~~D~~~~g~~a~~~L~~~G~r~I~~i~~~~~~~~~~~~~R~~ 161 (412)
T 4fe7_A 86 --DKQIEQALADVDVPIVGVGGSYHLAE--SYPPVHYIATDNYALVESAFLHLKEKGVNRFAFYGLPESSGKRWATEREY 161 (412)
T ss_dssp --CHHHHHHHTTCCSCEEEEEECCSSGG--GSCSSEEEEECHHHHHHHHHHHHHHTTCCEEEEECCCTTSCCHHHHHHHH
T ss_pred --ChHHHHHHhhCCCCEEEecCCccccc--cCCCCCEEEeCHHHHHHHHHHHHHHcCCceEEEecccccccccHHHHHHH
Confidence 22345567778999998765433211 1133445666777778888888888899999999865432 445678
Q ss_pred HHHHHHhhcCcEEEEeecCCC-CCChHHHHHHHHhhcc--CCceEEEEEcChhhHHHHHHHHHhCCCCCCC-eEEEEeC
Q 002267 202 VLGDALSKKRAKISYKAPFSP-GASRSAINSLLVGANL--MESRVFVVHVNPDTGLTIFSVAKSLGMTAGS-YVWIATD 276 (945)
Q Consensus 202 ~l~~~l~~~g~~v~~~~~~~~-~~~~~d~~~~l~~l~~--~~~~vivl~~~~~~~~~~~~~a~~~g~~~~~-~~wi~~~ 276 (945)
.+.+++++.|+.......... ..+..+....+.++.. .++++|+ +.+...+..+++++++.|+..++ ...++.|
T Consensus 162 Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~aI~-~~nD~~A~g~~~al~~~G~~vP~disvig~D 239 (412)
T 4fe7_A 162 AFRQLVAEEKYRGVVYQGLETAPENWQHAQNRLADWLQTLPPQTGII-AVTDARARHILQVCEHLHIPVPEKLCVIGID 239 (412)
T ss_dssp HHHHHHTTSSSCCEEECCSCSSCSSHHHHHHHHHHHHHHSCTTEEEE-ESSHHHHHHHHHHHHHHTCCTTTTSEEEESS
T ss_pred HHHHHHHHcCCCccccccccccccchhhHHHHHHHHHHhCCCCeEEE-EEecHHHHHHHHHHHHcCCCCCceEEEEeec
Confidence 899999999876432221111 1122233333333322 3567665 46677888999999999987554 4455544
No 149
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=97.29 E-value=0.0016 Score=70.58 Aligned_cols=136 Identities=14% Similarity=0.082 Sum_probs=96.2
Q ss_pred HHhCCCCccEEEEEcCCCCCCCCHHHHHHHHHcCcccEEEecEEEe----cCcceeEEecccccccceEEEEEccCCCCC
Q 002267 522 VNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDITIV----TNRTKLVDFTQPYMESGLVVVAPVQKLKSS 597 (945)
Q Consensus 522 ~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~~~~t----~~r~~~~dfs~p~~~~~~~~vv~~~~~~~~ 597 (945)
.+..|++ +++.++ +++..++..|..|++|+++++.... .++.....+..++...+..+++++..
T Consensus 59 ~~~~g~~--v~~~~~------~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~---- 126 (346)
T 3qsl_A 59 FKDEGLD--VSIADF------AGGSKALQAVVGGSADVVSGAFEHTLSLQAKGQFYRAFALQGRAPMIGVGVSKKN---- 126 (346)
T ss_dssp HHHTTCE--EEEEEC------SSHHHHHHHHHTTSCSEEEEETHHHHHHHHTTCCEEEEEESBSSCCEEEEEETTT----
T ss_pred hHhhCCe--EEEEec------CChHHHHHHHHCCCCCEEccchHHHHHHHhCCCCeEEEEecccCCCcEEEEecCc----
Confidence 3567866 555543 5689999999999999987654433 45556677777766667777776543
Q ss_pred ceeeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCCccchhhHHHHHHHHhhccccCcccccchhhHHHHHHHH
Q 002267 598 PWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEFRGPPSQQLVTIFWFSFSTMFFSHRENTVSSLGRVVLIVWLFV 677 (945)
Q Consensus 598 ~~~fl~PF~~~~W~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~s~~~R~~~~~w~~~ 677 (945)
T Consensus 127 -------------------------------------------------------------------------------- 126 (346)
T 3qsl_A 127 -------------------------------------------------------------------------------- 126 (346)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhhhhhhhhheeeeeccccCCCCChHHhhcCCCCeEEe-eCchHHHHHH---Hhhccc--cccceecCCHHHHHHHH
Q 002267 678 VLIINSSYTASLTSILTVQQLTSQIEGIDSLISSTEPIGVQ-DGSFAWNYLV---DELKIA--ESRLVKLKNMEEYSIAL 751 (945)
Q Consensus 678 ~lil~~~Yta~L~s~Lt~~~~~~~i~~~~dL~~~~~~v~~~-~~s~~~~~l~---~~~~~~--~~~~~~~~~~~~~~~~l 751 (945)
.++|++++||. |++|++. .|+....++. ...+.. ..+++.+....+...+|
T Consensus 127 ---------------------~~~i~s~~DL~--Gk~i~~~~~gs~~~~~~~~~l~~~G~~~~~v~~~~~~~~~~~~~al 183 (346)
T 3qsl_A 127 ---------------------LPGYKGPADLK--GRKIGVTAPGSSTNMVVNFFLAKHGLKASDVSFIGVGAGAGAVTAL 183 (346)
T ss_dssp ---------------------CTTCCSGGGGT--TCEEEESSTTSHHHHHHHHHHHHTTCCGGGSEEEECCSSHHHHHHH
T ss_pred ---------------------ccCCCChHHcC--CCEEEECCCCcHHHHHHHHHHHHcCCCHHHeEEEecCCcHHHHHHH
Confidence 13789999997 8899998 6765443332 234443 23456677778999999
Q ss_pred hcCCCCCceeEEecchhhHHHHhcc
Q 002267 752 ARGPKGGGVAAIVDELPYIELFMSK 776 (945)
Q Consensus 752 ~~~~~~g~~~a~~~~~~~~~~~~~~ 776 (945)
.+ |++|+++...++......+
T Consensus 184 ~~----G~vDa~~~~~p~~~~~~~~ 204 (346)
T 3qsl_A 184 RS----GQIDAISNTDPVVSMLETS 204 (346)
T ss_dssp HH----TSCSEEEEETTHHHHHHHT
T ss_pred Hc----CCccEEEecchhHHHHHhC
Confidence 99 8999999988887766555
No 150
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=97.25 E-value=0.0039 Score=65.08 Aligned_cols=197 Identities=14% Similarity=0.034 Sum_probs=127.6
Q ss_pred CceEEEEEEeccC-CccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChh
Q 002267 48 PSSVRIGALFTYD-SVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAIGPQSSG 126 (945)
Q Consensus 48 ~~~i~IG~l~~l~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~ 126 (945)
...-+||+++|-. ..+-.....+++-++++. |+.+ +.+.++..++..-.+....++.+++.+||-..
T Consensus 8 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~-~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~--- 75 (277)
T 3hs3_A 8 KKSKMIGIIIPDLNNRFYAQIIDGIQEVIQKE--------GYTA-LISFSTNSDVKKYQNAIINFENNNVDGIITSA--- 75 (277)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHT--------TCEE-EEEECSSCCHHHHHHHHHHHHHTTCSEEEEEC---
T ss_pred CCCCEEEEEeCCCCChhHHHHHHHHHHHHHHC--------CCCE-EEEEeCCCChHHHHHHHHHHHhCCCCEEEEcc---
Confidence 3467899999864 333345666666666553 5551 33467777777766677777788887776422
Q ss_pred HHHHHHHhhcccCccEEecccC-CCCCCCCCCCceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEeC--CcccchHHHH
Q 002267 127 IAHVISHVVNELNVPLLSFGAT-DPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDD--DYGRNGISVL 203 (945)
Q Consensus 127 ~~~~va~~~~~~~iP~Is~~a~-~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~--~~g~~~~~~l 203 (945)
.....+...++|+|..... .+ + +.+ .+..++..-+..+++++. .|.++|+++.... .....-.+.+
T Consensus 76 ---~~~~~~~~~~iPvV~~~~~~~~---~---~~~-~V~~D~~~~g~~a~~~L~-~G~~~I~~i~~~~~~~~~~~R~~Gf 144 (277)
T 3hs3_A 76 ---FTIPPNFHLNTPLVMYDSANIN---D---DIV-RIVSNNTKGGKESIKLLS-KKIEKVLIQHWPLSLPTIRERIEAM 144 (277)
T ss_dssp ---CCCCTTCCCSSCEEEESCCCCC---S---SSE-EEEECHHHHHHHHHHTSC-TTCCEEEEEESCTTSHHHHHHHHHH
T ss_pred ---hHHHHHHhCCCCEEEEcccccC---C---CCE-EEEEChHHHHHHHHHHHH-hCCCEEEEEeCCCcCccHHHHHHHH
Confidence 1123456679999987543 22 1 234 566777777777888777 9999999997542 2344557889
Q ss_pred HHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhcc--CCceEEEEEcChhhHHHHHHHHHhCCCCCCCeEEE
Q 002267 204 GDALSKKRAKISYKAPFSPGASRSAINSLLVGANL--MESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWI 273 (945)
Q Consensus 204 ~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vivl~~~~~~~~~~~~~a~~~g~~~~~~~wi 273 (945)
.+++++.|+.+... .... +. + ...+.++.+ .++++|+ +.+...+..+++++++.|+..++-+-+
T Consensus 145 ~~~l~~~g~~~~~~-~~~~--~~-~-~~~~~~~l~~~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~di~v 210 (277)
T 3hs3_A 145 TAEASKLKIDYLLE-ETPE--NN-P-YISAQSALNKSNQFDAII-TVNDLYAAEIIKEAKRRNLKIPDDFQL 210 (277)
T ss_dssp HHHHHHTTCEEEEE-ECCS--SC-H-HHHHHHHHHTGGGCSEEE-CSSHHHHHHHHHHHHHTTCCTTTTCEE
T ss_pred HHHHHHCCCCCCCC-CccC--Cc-h-HHHHHHHHcCCCCCCEEE-ECCHHHHHHHHHHHHHcCCCCCCceEE
Confidence 99999999987654 3331 11 1 333444333 3567664 456677889999999999876544433
No 151
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=97.25 E-value=0.011 Score=63.62 Aligned_cols=200 Identities=9% Similarity=0.005 Sum_probs=118.4
Q ss_pred CCceEEEEEEeccC---CccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccC
Q 002267 47 RPSSVRIGALFTYD---SVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAIGPQ 123 (945)
Q Consensus 47 ~~~~i~IG~l~~l~---~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~ 123 (945)
..++.+||++++-. ..+-.....|++.+.++.+ -++++.+.++..+.....+...+++++++..||+..
T Consensus 23 ~~~~~kIglv~~g~i~D~~f~~~~~~G~~~~~~~~G--------~~~~~~~~e~~~~~~d~~~~l~~l~~~g~d~Ii~~g 94 (356)
T 3s99_A 23 AEEKLKVGFIYIGPPGDFGWTYQHDQARKELVEALG--------DKVETTFLENVAEGADAERSIKRIARAGNKLIFTTS 94 (356)
T ss_dssp ---CEEEEEECSSCGGGSSHHHHHHHHHHHHHHHHT--------TTEEEEEECSCCTTHHHHHHHHHHHHTTCSEEEECS
T ss_pred cCCCCEEEEEEccCCCchhHHHHHHHHHHHHHHHhC--------CceEEEEEecCCCHHHHHHHHHHHHHCCCCEEEECC
Confidence 45689999999632 2334456677776666662 125666667665555566777888888999998864
Q ss_pred ChhHHHHHHHhhccc-CccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHH-H-cCCeEEEEEEEe-CCcccch
Q 002267 124 SSGIAHVISHVVNEL-NVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVE-Y-YGWREVIAIFVD-DDYGRNG 199 (945)
Q Consensus 124 ~s~~~~~va~~~~~~-~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~-~-~~w~~v~ii~~d-~~~g~~~ 199 (945)
.....++..++.++ ++|++-..... . .|++..... +..++..++-.+. . -.-++|++|... .+.....
T Consensus 95 -~~~~~~~~~vA~~~Pdv~fv~id~~~---~---~~Nv~sv~~-~~~eg~ylaG~~A~~~tk~~kIGfVgg~~~p~v~~~ 166 (356)
T 3s99_A 95 -FGYMDPTVKVAKKFPDVKFEHATGYK---T---ADNMSAYNA-RFYEGRYVQGVIAAKMSKKGIAGYIGSVPVPEVVQG 166 (356)
T ss_dssp -GGGHHHHHHHHTTCTTSEEEEESCCC---C---BTTEEEEEE-CHHHHHHHHHHHHHHHCSSCEEEEEECCCCHHHHHH
T ss_pred -HHHHHHHHHHHHHCCCCEEEEEeccc---c---CCcEEEEEe-chhHHHHHHHHHHHHhcCCCEEEEECCCccHHHHHH
Confidence 44455677777765 78888643321 1 133333332 3345555555431 1 134799999753 2223345
Q ss_pred HHHHHHHHhhcCcEEEEeecCCCC-CChHHHHHHHHhhccCCceEEEEEcChhhHHHHHHHHHhCCC
Q 002267 200 ISVLGDALSKKRAKISYKAPFSPG-ASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGM 265 (945)
Q Consensus 200 ~~~l~~~l~~~g~~v~~~~~~~~~-~~~~d~~~~l~~l~~~~~~vivl~~~~~~~~~~~~~a~~~g~ 265 (945)
...+.+.++..+..+.....+.-. .+...-....+.+.+.++|+|+-+.... .++++|++.|.
T Consensus 167 ~~GF~~G~k~~np~i~v~~~~~g~~~d~~kg~~~a~~l~~~G~DvIf~~~d~~---Gv~~aa~e~Gv 230 (356)
T 3s99_A 167 INSFMLGAQSVNPDFRVKVIWVNSWFDPGKEADAAKALIDQGVDIITQHTDST---AAIQVAHDRGI 230 (356)
T ss_dssp HHHHHHHHHTTCTTCEEEEEECSSSCCHHHHHHHHHHHHHTTCSEEEESSSSS---HHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCChHHHHHHHHHHHhCCCcEEEECCCch---HHHHHHHHcCC
Confidence 677888888776543322222211 2333334455566667899888776553 57889998774
No 152
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=97.20 E-value=0.011 Score=64.12 Aligned_cols=204 Identities=13% Similarity=0.037 Sum_probs=116.4
Q ss_pred CceEEEEEEeccC-CccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCC-hHHHHHHHHHHHhcCcEEEE--ccC
Q 002267 48 PSSVRIGALFTYD-SVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCS-GFVGTMEALQLMENEVVAAI--GPQ 123 (945)
Q Consensus 48 ~~~i~IG~l~~l~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~-~~~a~~~a~~li~~~v~aii--Gp~ 123 (945)
....+||++.|-- ..+-.....+++-++++. |+.+.+. ++..+ +..-.+....++.+++.+|| +|.
T Consensus 59 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~--~~~~~~~~~~~~~l~~l~~~~vdGiIi~~~~ 128 (349)
T 1jye_A 59 KQSLLIGVATSSLALHAPSQIVAAILSRADQL--------GASVVVS--MVERSGVEACKTAVHNLLAQRVSGLIINYPL 128 (349)
T ss_dssp ---CEEEEEESCTTSHHHHHHHHHHHHHHHHT--------TCEEEEE--ECCSSSHHHHHHHHHHHHTTTCSCEEEESCC
T ss_pred CCCCEEEEEeCCCCcccHHHHHHHHHHHHHHc--------CCEEEEE--eCCCCcHHHHHHHHHHHHHCCCCEEEEecCC
Confidence 3467899999853 233234556666555542 6666654 33333 44434455566777776655 454
Q ss_pred ChhHHHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEeCC--cccchHH
Q 002267 124 SSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDD--YGRNGIS 201 (945)
Q Consensus 124 ~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~ 201 (945)
.... .....+...++|+|...... ....+ ....++..-+..+++++...|.++|++|..+.. ....-.+
T Consensus 129 ~~~~--~~~~~~~~~~iPvV~i~~~~----~~~~~---~V~~d~~~~~~~a~~~L~~~G~~~I~~i~g~~~~~~~~~R~~ 199 (349)
T 1jye_A 129 DDQD--AIAVEAACTNVPALFLDVSD----QTPIN---SIIFSHEDGTRLGVEHLVALGHQQIALLAGPLSSVSARLRLA 199 (349)
T ss_dssp CHHH--HHHHHHHTTTSCEEESSSCT----TSSSC---EEEECHHHHHHHHHHHHHHHTCCSEEEEECCTTSHHHHHHHH
T ss_pred CChh--HHHHHHhhCCCCEEEEcccC----CCCCC---EEEEchHHHHHHHHHHHHHCCCCEEEEEeCCCCCccHHHHHH
Confidence 4322 22333445789999865321 11223 244555555666777776679999999986432 2344567
Q ss_pred HHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhcc--CCceEEEEEcChhhHHHHHHHHHhCCCCCCCeEEE
Q 002267 202 VLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANL--MESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWI 273 (945)
Q Consensus 202 ~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vivl~~~~~~~~~~~~~a~~~g~~~~~~~wi 273 (945)
.+.+++++.|+.+.....-. .+..+-...+.++.. ..+++|+ +.+...+..+++++++.|+..++-+-+
T Consensus 200 Gf~~al~~~gi~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~ai~-~~nD~~A~g~~~al~~~G~~vP~disv 270 (349)
T 1jye_A 200 GWHKYLTRNQIQPIAEREGD--WSAMSGFQQTMQMLNEGIVPTAML-VANDQMALGAMRAITESGLRVGADISV 270 (349)
T ss_dssp HHHHHHHHTTCCCSEEEECC--SSHHHHHHHHHHHHHTTCCCSEEE-ESSHHHHHHHHHHHHHTTCCBTTTBEE
T ss_pred HHHHHHHHcCCCccccccCC--CChHHHHHHHHHHHhCCCCCCEEE-ECChHHHHHHHHHHHHcCCCCCCcEEE
Confidence 88999999997543221111 222222233333332 3467765 456667888999999999876544433
No 153
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=97.18 E-value=0.0087 Score=64.40 Aligned_cols=201 Identities=11% Similarity=0.075 Sum_probs=125.3
Q ss_pred CceEEEEEEeccC-CccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChh
Q 002267 48 PSSVRIGALFTYD-SVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAIGPQSSG 126 (945)
Q Consensus 48 ~~~i~IG~l~~l~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~ 126 (945)
...-+||++.|-. ..+-.....+++-++++. |+.+.+. ++.. +..-.+....++.+++.+||-...
T Consensus 62 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~~--~~~~-~~~~~~~~~~l~~~~vdGiIi~~~-- 128 (333)
T 3jvd_A 62 HRSALVGVIVPDLSNEYYSESLQTIQQDLKAA--------GYQMLVA--EANS-VQAQDVVMESLISIQAAGIIHVPV-- 128 (333)
T ss_dssp --CCEEEEEESCSSSHHHHHHHHHHHHHHHHH--------TCEEEEE--ECCS-HHHHHHHHHHHHHHTCSEEEECCC--
T ss_pred CCCCEEEEEeCCCcChHHHHHHHHHHHHHHHC--------CCEEEEE--CCCC-hHHHHHHHHHHHhCCCCEEEEcch--
Confidence 3457899999864 334445677777777664 5666654 4444 555555566667778888775333
Q ss_pred HHHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEeCC--cccchHHHHH
Q 002267 127 IAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDD--YGRNGISVLG 204 (945)
Q Consensus 127 ~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~l~ 204 (945)
...+...++|+|......+. ...+ .+..++..-+..+++++...|-++|++|..+.. ....-.+.+.
T Consensus 129 -----~~~~~~~~iPvV~~~~~~~~---~~~~---~V~~D~~~~~~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~ 197 (333)
T 3jvd_A 129 -----VGSIAPEGIPMVQLTRGELG---PGFP---RVLCDDEAGFFQLTESVLGGSGMNIAALVGEESLSTTQERMRGIS 197 (333)
T ss_dssp -----TTCCC-CCSCEEEECC-------CCSC---EEEECHHHHHHHHHHHHCCSSSCEEEEEESCTTSHHHHHHHHHHH
T ss_pred -----HHHHhhCCCCEEEECccCCC---CCCC---EEEEChHHHHHHHHHHHHHCCCCeEEEEeCCCCCccHHHHHHHHH
Confidence 34556779999987543321 1223 345566667777888887789999999986532 3345578899
Q ss_pred HHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCC-ceEEEEEcChhhHHHHHHHHHhCCCCCCC-eEEEEeC
Q 002267 205 DALSKKRAKISYKAPFSPGASRSAINSLLVGANLME-SRVFVVHVNPDTGLTIFSVAKSLGMTAGS-YVWIATD 276 (945)
Q Consensus 205 ~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~-~~vivl~~~~~~~~~~~~~a~~~g~~~~~-~~wi~~~ 276 (945)
+++++.|+..... .. ..+.++-...+.++.+.. +++|+ +.+...+..++++++++|+..++ ...++.|
T Consensus 198 ~al~~~g~~~~~~--~~-~~~~~~~~~~~~~ll~~~~~~ai~-~~nd~~A~g~~~al~~~G~~vP~disvig~D 267 (333)
T 3jvd_A 198 HAASIYGAEVTFH--FG-HYSVESGEEMAQVVFNNGLPDALI-VASPRLMAGVMRAFTRLNVRVPHDVVIGGYD 267 (333)
T ss_dssp HHHHHTTCEEEEE--EC-CSSHHHHHHHHHHHHHTCCCSEEE-ECCHHHHHHHHHHHHHTTCCTTTTCEEEEES
T ss_pred HHHHHCCCCEEEe--cC-CCCHHHHHHHHHHHhcCCCCcEEE-ECCHHHHHHHHHHHHHcCCCCCCceEEEEEC
Confidence 9999999872211 01 123444444444443332 77765 46677788999999999987554 4444444
No 154
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=97.14 E-value=0.035 Score=58.43 Aligned_cols=194 Identities=13% Similarity=0.063 Sum_probs=109.4
Q ss_pred ceEEEEEEec--cCC-ccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCCh
Q 002267 49 SSVRIGALFT--YDS-VIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAIGPQSS 125 (945)
Q Consensus 49 ~~i~IG~l~~--l~~-~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s 125 (945)
++.+||+++| ++. .+-.....|++.+.++. |+++. +.++..++....+....++++++.+||.....
T Consensus 4 ~~~~Ig~v~~~~~~d~~f~~~~~~gi~~~~~~~--------g~~~~--~~~~~~~~~~~~~~l~~l~~~~vdgIi~~~~~ 73 (296)
T 2hqb_A 4 GGGMVGLLVEDTIDDQGWNRKAYEGLLNIHSNL--------DVDVV--LEEGVNSEQKAHRRIKELVDGGVNLIFGHGHA 73 (296)
T ss_dssp --CEEEEECCCC----CCTHHHHHHHHHHHHHS--------CCEEE--EECCCCSHHHHHHHHHHHHHTTCCEEEECSTH
T ss_pred CCcEEEEEECCCCCCCcHHHHHHHHHHHHHHHh--------CCeEE--EEeCCCCHHHHHHHHHHHHHCCCCEEEEcCHh
Confidence 3578999997 332 44445566666665553 55554 34454454444556667777899999875433
Q ss_pred hHHHHHHHhhccc-CccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHH-HHHHc-CCeEEEEEEEeCCcccchHHH
Q 002267 126 GIAHVISHVVNEL-NVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVAD-LVEYY-GWREVIAIFVDDDYGRNGISV 202 (945)
Q Consensus 126 ~~~~~va~~~~~~-~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~-~l~~~-~w~~v~ii~~d~~~g~~~~~~ 202 (945)
. ...+..++..+ ++|++...... .. +.+-... .|..++..++- ++.++ +-++|++|...... . ....
T Consensus 74 ~-~~~~~~~~~~~p~~p~v~id~~~---~~---~~~~~v~-~d~~~g~~lag~la~~l~~~~~Ig~i~g~~~~-~-r~~G 143 (296)
T 2hqb_A 74 F-AEYFSTIHNQYPDVHFVSFNGEV---KG---ENITSLH-FEGYAMGYFGGMVAASMSETHKVGVIAAFPWQ-P-EVEG 143 (296)
T ss_dssp H-HHHHHTTTTSCTTSEEEEESCCC---CS---SSEEEEE-ECCHHHHHHHHHHHHHTCSSSEEEEEESCTTC-H-HHHH
T ss_pred H-HHHHHHHHHHCCCCEEEEEecCc---CC---CCEEEEE-echHHHHHHHHHHHHhhccCCeEEEEcCcCch-h-hHHH
Confidence 2 33355555544 78988754321 11 2332223 34444444443 33342 56899999854322 2 7788
Q ss_pred HHHHHhhcCcEEEEeecCCCCC-ChHHHHHHHHhhccCCceEEEEEcChhhHHHHHHHHHhCC
Q 002267 203 LGDALSKKRAKISYKAPFSPGA-SRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLG 264 (945)
Q Consensus 203 l~~~l~~~g~~v~~~~~~~~~~-~~~d~~~~l~~l~~~~~~vivl~~~~~~~~~~~~~a~~~g 264 (945)
+.+.+++.|.. .....+.... +...-....+++.+.++++|+ +.....+..+++++++.|
T Consensus 144 f~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~a~~ll~~~~daI~-~~~D~~a~Gv~~a~~e~G 204 (296)
T 2hqb_A 144 FVDGAKYMNES-EAFVRYVGEWTDADKALELFQELQKEQVDVFY-PAGDGYHVPVVEAIKDQG 204 (296)
T ss_dssp HHHHHHHTTCC-EEEEEECSSSSCHHHHHHHHHHHHTTTCCEEE-CCCTTTHHHHHHHHHHHT
T ss_pred HHHHHHHhCCC-eEEEEeeccccCHHHHHHHHHHHHHCCCcEEE-ECCCCCCHHHHHHHHHcC
Confidence 99999998874 2221122111 223333445555556788765 455666778889999887
No 155
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=97.04 E-value=0.0011 Score=70.52 Aligned_cols=78 Identities=8% Similarity=-0.064 Sum_probs=52.8
Q ss_pred CceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHHHHHHHHHcCcccEEEecE-EEec---CcceeEEeccccccc
Q 002267 508 PGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDI-TIVT---NRTKLVDFTQPYMES 583 (945)
Q Consensus 508 ~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~~-~~t~---~r~~~~dfs~p~~~~ 583 (945)
..+.|+.+.+-+-+.+..|++ +++.++ +....++..|..|++|+++++. .... +....+.+..++...
T Consensus 15 ~~~~~~~va~~~g~~~~~Gl~--v~~~~~------~~~~~~~~~l~~G~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 86 (302)
T 3ix1_A 15 AVHTFLYVAIENGYFAEEGLD--VDIVFP------TNPTDPIQLTASGAIPLALSYQPDVILARSKDLPVVSVASVVRSP 86 (302)
T ss_dssp GGGHHHHHHHHTTHHHHTTEE--EEEECC------SSTTHHHHHHHHTSCSEEEECHHHHHHHHHTTCCEEEEEEEECSC
T ss_pred cccHHHHHHHHcChHHHcCCc--EEEecC------CCCchHHHHHHCCCCCEEecCHHHHHHHHHCCCCEEEEEEEeccC
Confidence 344677788878888888966 555542 3345899999999999998762 2222 333456666676666
Q ss_pred ceEEEEEccC
Q 002267 584 GLVVVAPVQK 593 (945)
Q Consensus 584 ~~~~vv~~~~ 593 (945)
+..+++++..
T Consensus 87 ~~~l~~~~~s 96 (302)
T 3ix1_A 87 LNHVMFLAEQ 96 (302)
T ss_dssp CEEEEEEGGG
T ss_pred CEEEEEECCC
Confidence 7777776643
No 156
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=96.97 E-value=0.0011 Score=70.35 Aligned_cols=203 Identities=13% Similarity=0.088 Sum_probs=125.4
Q ss_pred CceEEEEEEeccC-Ccccc-chHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-cCC
Q 002267 48 PSSVRIGALFTYD-SVIGR-AAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAIG-PQS 124 (945)
Q Consensus 48 ~~~i~IG~l~~l~-~~~g~-~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiG-p~~ 124 (945)
...-+||+++|-. ..+-. ....+++-++++. |+.+.+ .++..++....+....++.++|.+||- |..
T Consensus 11 ~~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~--------g~~~~~--~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~ 80 (301)
T 3miz_A 11 SRSNTFGIITDYVSTTPYSVDIVRGIQDWANAN--------GKTILI--ANTGGSSEREVEIWKMFQSHRIDGVLYVTMY 80 (301)
T ss_dssp -CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHT--------TCEEEE--EECTTCHHHHHHHHHHHHHTTCSEEEEEEEE
T ss_pred CCCCEEEEEeCCCcCcccHHHHHHHHHHHHHHC--------CCEEEE--EeCCCChHHHHHHHHHHHhCCCCEEEEecCC
Confidence 3457899999875 23333 6677777777663 566654 556667777666777777777776653 222
Q ss_pred hhHHHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEeCC--cccchHHH
Q 002267 125 SGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDD--YGRNGISV 202 (945)
Q Consensus 125 s~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~ 202 (945)
... ....+...++|+|......+.. +.+..+..++..-+..+++++...|.++|++|..+.. ....-.+.
T Consensus 81 ~~~---~~~~~~~~~iPvV~~~~~~~~~-----~~~~~V~~D~~~~g~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~G 152 (301)
T 3miz_A 81 RRI---VDPESGDVSIPTVMINCRPQTR-----ELLPSIEPDDYQGARDLTRYLLERGHRRIGYIRLNPILLGAELRLDA 152 (301)
T ss_dssp EEE---CCCCCTTCCCCEEEEEEECSST-----TSSCEEEECHHHHHHHHHHHHHTTTCCSEEEEECCTTSHHHHHHHHH
T ss_pred ccH---HHHHHHhCCCCEEEECCCCCCC-----CCCCEEeeChHHHHHHHHHHHHHcCCCeEEEEecCccchhHHHHHHH
Confidence 221 3445567799999875433211 0223355667777777888888889999999986533 33455788
Q ss_pred HHHHHhhcCcEE----EEee---cCCCCCCh--HHHHHHHHhhccCCceEEEEEcChhhHHHHHHHHHhCCCCCCCeE
Q 002267 203 LGDALSKKRAKI----SYKA---PFSPGASR--SAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYV 271 (945)
Q Consensus 203 l~~~l~~~g~~v----~~~~---~~~~~~~~--~d~~~~l~~l~~~~~~vivl~~~~~~~~~~~~~a~~~g~~~~~~~ 271 (945)
+.+++++.|+.+ .... ........ ..+...+++ ...+++|+ +.+...+..++++++++|+..++-+
T Consensus 153 f~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~ai~-~~~d~~A~g~~~al~~~g~~vP~di 227 (301)
T 3miz_A 153 FRRTTSEFGLTENDLSISLGMDGPVGAENNYVFAAATEMLKQ--DDRPTAIM-SGNDEMAIQIYIAAMALGLRIPQDV 227 (301)
T ss_dssp HHHHHHHHTCCGGGEEEEECEESSTTSCEECHHHHHHHHHTS--TTCCSEEE-ESSHHHHHHHHHHHHTTTCCHHHHC
T ss_pred HHHHHHHcCCCCCcceEEEcCCCCcCccccHHHHHHHHHHcC--CCCCcEEE-ECCHHHHHHHHHHHHHcCCCCCCCe
Confidence 999999988753 1221 22211111 223333321 23567765 4566678899999999998754433
No 157
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=96.52 E-value=0.0021 Score=55.41 Aligned_cols=78 Identities=15% Similarity=0.072 Sum_probs=63.2
Q ss_pred HHHHHHhhhheeecccCCCCCCCCccchhhHHHHHHHHhhccc--cCcccccchhhHHHHHHHHHHhhhhhhhhhhheee
Q 002267 616 FFLFVGAVVWILEHRFNNEFRGPPSQQLVTIFWFSFSTMFFSH--RENTVSSLGRVVLIVWLFVVLIINSSYTASLTSIL 693 (945)
Q Consensus 616 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~L 693 (945)
.+++.+.+++.+|+..+ ++...++.+++|+++.++...+ .-.|.+..+|++.++|.++++.+.+...+.+++.+
T Consensus 18 ~~~~~a~~~~~~E~~~~----~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~ 93 (103)
T 2k1e_A 18 VLEEASKKAVEAERGAP----GAALISYPDAIWWSVETATTVGYGDRYPVTEEGRKVAEQVMKAGIEVFALVTAALATDF 93 (103)
T ss_dssp HHHHHHHHHHHHHTTST----TCCCCCGGGTTTTTTGGGGCCSCCSSCCCSSSCTHHHHHHHHHHHHHHHHTHHHHHTTG
T ss_pred HHHHHHHhhhhhccCCC----CcccccHHHHHHHHHHHHhcccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666777777643 3445689999999999998776 44799999999999999999999999999999988
Q ss_pred eecc
Q 002267 694 TVQQ 697 (945)
Q Consensus 694 t~~~ 697 (945)
+...
T Consensus 94 ~~~~ 97 (103)
T 2k1e_A 94 VRRE 97 (103)
T ss_dssp GGHH
T ss_pred HHHH
Confidence 7654
No 158
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=96.44 E-value=0.0051 Score=65.91 Aligned_cols=60 Identities=18% Similarity=0.197 Sum_probs=42.7
Q ss_pred CCCChHHhhcCCCCeEEe-eCchHHH---HHHHhhcccccc--ceecCCHHHHHHHHhcCCCCCceeEEecc
Q 002267 701 QIEGIDSLISSTEPIGVQ-DGSFAWN---YLVDELKIAESR--LVKLKNMEEYSIALARGPKGGGVAAIVDE 766 (945)
Q Consensus 701 ~i~~~~dL~~~~~~v~~~-~~s~~~~---~l~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~g~~~a~~~~ 766 (945)
+|++++||. +++|++. .|+.... .+.+..++.... .+.|.+..+.+.+|.. |++|+++..
T Consensus 137 ~i~sl~DL~--gk~v~~~~~Gs~~~~~~~~~l~~~Gi~~~~v~~v~~~g~~~a~~aL~~----G~vDa~~~~ 202 (327)
T 4ddd_A 137 NISVIDDIK--GKRVNIGSPGTGVRVAMLKLLGEKGWTKKDFSVMAELKSSEQAQALCD----NKIDVMVDV 202 (327)
T ss_dssp SCCSGGGGT--TSEEECCSTTSHHHHHHHHHHHHHTCCGGGCSEEECCCHHHHHHHHHT----TSCSBEEEE
T ss_pred CCCCHHHhC--CCEEecCCCCccHHHHHHHHHHHcCCChHhcchhhcCCHHHHHHHHHc----CCCCEEEEc
Confidence 789999997 7788884 5654322 222344554433 3678899999999999 899988874
No 159
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=96.22 E-value=0.062 Score=54.22 Aligned_cols=126 Identities=13% Similarity=-0.005 Sum_probs=88.1
Q ss_pred HHHHHHHhcCcEEEEccCChhHH--------HHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHH
Q 002267 106 MEALQLMENEVVAAIGPQSSGIA--------HVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADL 177 (945)
Q Consensus 106 ~~a~~li~~~v~aiiGp~~s~~~--------~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~ 177 (945)
+++.+|...++.+|+=+-+|... .....+.+..++|+++ ...+.++.
T Consensus 57 ~aa~~L~~ag~d~i~~aCtsas~~~G~~~~~~~~~~l~~~~~iPv~~-------------------------~~~A~~~a 111 (240)
T 3ixl_A 57 DHARRLQKQGAAVVSLMCTSLSFYRGAAFNAALTVAMREATGLPCTT-------------------------MSTAVLNG 111 (240)
T ss_dssp HHHHHHHHTTEEEEEECCHHHHHTTCHHHHHHHHHHHHHHHSSCEEE-------------------------HHHHHHHH
T ss_pred HHHHHhccCCCCEEEECCcHHHHhcccchHHHHHHHHHhccCCCEEC-------------------------HHHHHHHH
Confidence 34455555589888775445443 2345555667899886 24677788
Q ss_pred HHHcCCeEEEEEEEeCCcccchHHHHHHHHhhcCcEEEEeecCCCC-------CChHHHHHHHHh-h-ccCCceEEEEEc
Q 002267 178 VEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPG-------ASRSAINSLLVG-A-NLMESRVFVVHV 248 (945)
Q Consensus 178 l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~-------~~~~d~~~~l~~-l-~~~~~~vivl~~ 248 (945)
+++.|-++|+++.+ |.....+.+++.+++.|++|......... .+...+...+++ + ...++|+||+.|
T Consensus 112 l~~~g~~rvglltp---y~~~~~~~~~~~l~~~Giev~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~adaivL~C 188 (240)
T 3ixl_A 112 LRALGVRRVALATA---YIDDVNERLAAFLAEESLVPTGCRSLGITGVEAMARVDTATLVDLCVRAFEAAPDSDGILLSS 188 (240)
T ss_dssp HHHTTCSEEEEEES---SCHHHHHHHHHHHHHTTCEEEEEEECCCCCHHHHHTCCHHHHHHHHHHHHHTSTTCSEEEEEC
T ss_pred HHHhCCCEEEEEeC---ChHHHHHHHHHHHHHCCCEEeccccCCCCCcchhhcCCHHHHHHHHHHHhhcCCCCCEEEEeC
Confidence 88899999999974 77777888999999999998765543311 245567777888 7 777899999988
Q ss_pred ChhhHHHHHHH
Q 002267 249 NPDTGLTIFSV 259 (945)
Q Consensus 249 ~~~~~~~~~~~ 259 (945)
..-....++.+
T Consensus 189 T~l~~l~~i~~ 199 (240)
T 3ixl_A 189 GGLLTLDAIPE 199 (240)
T ss_dssp TTSCCTTHHHH
T ss_pred CCCchhhhHHH
Confidence 66444444443
No 160
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=96.17 E-value=0.03 Score=61.01 Aligned_cols=211 Identities=11% Similarity=0.026 Sum_probs=116.4
Q ss_pred CceEEEEEEeccCCc--cccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEc-cCC
Q 002267 48 PSSVRIGALFTYDSV--IGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAIG-PQS 124 (945)
Q Consensus 48 ~~~i~IG~l~~l~~~--~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiG-p~~ 124 (945)
...-+||+++|-... ........+..++++.=+ |+.+.+...+...+. .-.+....+..++|.+||- |..
T Consensus 66 ~~s~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~------g~~~~~~~~~~~~~~-~~~~~~~~l~~~~vdGiIi~~~~ 138 (366)
T 3h5t_A 66 RRAGAIGVLLTEDLTYAFEDMASVDFLAGVAQAAG------DTQLTLIPASPASSV-DHVSAQQLVNNAAVDGVVIYSVA 138 (366)
T ss_dssp --CCEEEEEESSCTTHHHHSHHHHHHHHHHHHHSS------SCEEEEEECCCCTTC-CHHHHHHHHHTCCCSCEEEESCC
T ss_pred CCCCEEEEEecCCccccccCHHHHHHHHHHHHHHh------hCCEEEEEcCCCccH-HHHHHHHHHHhCCCCEEEEecCC
Confidence 345789999986421 112222333334443311 567777665543321 1223344555666665552 221
Q ss_pred hhHHHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEe------------
Q 002267 125 SGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVD------------ 192 (945)
Q Consensus 125 s~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d------------ 192 (945)
.. ......+...++|+|...... .....+ .+..++..-+..+++++...|-++|++|...
T Consensus 139 -~~-~~~~~~l~~~~iPvV~i~~~~---~~~~~~---~V~~D~~~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~g~~~~ 210 (366)
T 3h5t_A 139 -KG-DPHIDAIRARGLPAVIADQPA---REEGMP---FIAPNNRKAIAPAAQALIDAGHRKIGILSIRLDRANNDGEVTR 210 (366)
T ss_dssp -TT-CHHHHHHHHHTCCEEEESSCC---SCTTCC---EEEECHHHHTHHHHHHHHHTTCCSEEEEEECCSSSCCCEECCH
T ss_pred -CC-hHHHHHHHHCCCCEEEECCcc---CCCCCC---EEEeChHHHHHHHHHHHHHCCCCcEEEEecccccccccCcccc
Confidence 11 123345566799999864422 112223 3456666677778888888899999999832
Q ss_pred -------CCcccchHHHHHHHHhhcCcEEEEeecC-CCCCChHHHHHHHHhhcc--CCceEEEEEcChhhHHHHHHHHHh
Q 002267 193 -------DDYGRNGISVLGDALSKKRAKISYKAPF-SPGASRSAINSLLVGANL--MESRVFVVHVNPDTGLTIFSVAKS 262 (945)
Q Consensus 193 -------~~~g~~~~~~l~~~l~~~g~~v~~~~~~-~~~~~~~d~~~~l~~l~~--~~~~vivl~~~~~~~~~~~~~a~~ 262 (945)
......-.+.+.+++++.|+.+.....+ ....+..+-...+.++.+ ..+++|+. .+...+..+++++++
T Consensus 211 ~~~~~~~~~~~~~R~~Gf~~al~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ai~~-~nD~~A~g~~~al~~ 289 (366)
T 3h5t_A 211 ERLENAQYQVQRDRVRGAMEVFIEAGIDPGTVPIMECWINNRQHNFEVAKELLETHPDLTAVLC-TVDALAFGVLEYLKS 289 (366)
T ss_dssp HHHHTCCCTTHHHHHHHHHHHHHHHTCCGGGSCEEEESSCCHHHHHHHHHHHHHHCTTCCEEEE-SSHHHHHHHHHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHCCCCCCcceEEEcCCCCHHHHHHHHHHHHcCCCCCcEEEE-CCcHHHHHHHHHHHH
Confidence 2223445788999999998753210000 001233333334444432 35777654 566778889999999
Q ss_pred CCCCCCC-eEEEE
Q 002267 263 LGMTAGS-YVWIA 274 (945)
Q Consensus 263 ~g~~~~~-~~wi~ 274 (945)
+|+..++ ...++
T Consensus 290 ~G~~vP~disvig 302 (366)
T 3h5t_A 290 VGKSAPADLSLTG 302 (366)
T ss_dssp TTCCTTTTCEEEE
T ss_pred cCCCCCCceEEEE
Confidence 9987654 33443
No 161
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=95.99 E-value=0.0066 Score=54.11 Aligned_cols=76 Identities=17% Similarity=0.163 Sum_probs=61.3
Q ss_pred HHHHhhhheeecccCCCCCCCCccchhhHHHHHHHHhhccc--cCcccccchhhHHHHHHHHHHhhhhhhhhhhheeeee
Q 002267 618 LFVGAVVWILEHRFNNEFRGPPSQQLVTIFWFSFSTMFFSH--RENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTV 695 (945)
Q Consensus 618 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 695 (945)
++.+.+++.+|+.. .++...++.+++|+++.++...| .-.|.+..+|++.++|.++++.+.+...+.+++.++.
T Consensus 41 ~~~a~~~~~~E~~~----~~~~~~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~ 116 (122)
T 2ih3_C 41 LAGSYLAVLAERGA----PGAQLITYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVG 116 (122)
T ss_dssp HHHHHHHHHHHTTS----TTCCCCSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhheeeecC----CCCccCccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677777643 23445679999999999998665 4489999999999999999999999999999998875
Q ss_pred cc
Q 002267 696 QQ 697 (945)
Q Consensus 696 ~~ 697 (945)
..
T Consensus 117 ~~ 118 (122)
T 2ih3_C 117 RE 118 (122)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 162
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=95.92 E-value=0.074 Score=52.37 Aligned_cols=83 Identities=10% Similarity=0.086 Sum_probs=57.1
Q ss_pred CceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHHHHHHHHHcCcccEEEecE
Q 002267 485 MPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDI 564 (945)
Q Consensus 485 ~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~~ 564 (945)
++||||+... ....+-.+++..+.++.+ .+++++.. ++...+.++|.+|++|+++...
T Consensus 4 g~l~Ig~~~~--------------~~~~~l~~~l~~~~~~~P-~i~i~i~~-------~~~~~~~~~l~~g~~Dl~i~~~ 61 (219)
T 3jv9_A 4 GAFKLGLIFT--------------VAPYLLPKLIVSLRRTAP-KMPLMLEE-------NYTHTLTESLKRGDVDAIIVAE 61 (219)
T ss_dssp CCEEEEEETT--------------THHHHHHHHHHHHHHHST-TCCEEEEE-------ECHHHHHHHHHHTSSSEEEEES
T ss_pred CcEEEEEcch--------------hhHHHHHHHHHHHHHHCC-CcEEEEEe-------CCcHHHHHHHHcCCCCEEEEcC
Confidence 5789988322 112356678888888775 35566665 5678999999999999998643
Q ss_pred EEecCcceeEEecccccccceEEEEEccC
Q 002267 565 TIVTNRTKLVDFTQPYMESGLVVVAPVQK 593 (945)
Q Consensus 565 ~~t~~r~~~~dfs~p~~~~~~~~vv~~~~ 593 (945)
... ...+. ..++....+++++++..
T Consensus 62 ~~~---~~~~~-~~~l~~~~~~~v~~~~~ 86 (219)
T 3jv9_A 62 PFQ---EPGIV-TEPLYDEPFFVIVPKGH 86 (219)
T ss_dssp SCC---CTTEE-EEEEEEEEEEEEEETTC
T ss_pred CCC---CCCee-EEEeeeceEEEEEeCCC
Confidence 221 22232 46777888999998765
No 163
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=95.82 E-value=0.2 Score=53.33 Aligned_cols=217 Identities=11% Similarity=0.029 Sum_probs=124.9
Q ss_pred CCceEEEEEEeccCCccccchHHHHHHHHHHHhcCCCCC---CC--cEEEEEEecCCCCh-----HHHHHHHHHHHhc-C
Q 002267 47 RPSSVRIGALFTYDSVIGRAAGPAIAAAVDDVNSDPSIL---PG--TTLNFVIRDTNCSG-----FVGTMEALQLMEN-E 115 (945)
Q Consensus 47 ~~~~i~IG~l~~l~~~~g~~~~~a~~~Ave~iN~~~~il---~g--~~l~l~~~D~~~~~-----~~a~~~a~~li~~-~ 115 (945)
..++++||++.+.-+ ......++++..+++.|..+..- .| ..+.+++.++-.|+ .++.+...++... +
T Consensus 9 ~~~~~~igi~t~t~s-~se~t~~~a~~~i~~yg~~pn~~~l~~~~s~~iG~I~~~~~pd~F~se~~ttI~~I~~~a~~~g 87 (371)
T 3qi7_A 9 IIDDFKVAVVTQPLS-ENKVQYNMVEEMAKEYEEENKIDKDKDGQTKVKQTIKHVVLPENFTSNIDSAINKIVKLADDKE 87 (371)
T ss_dssp CCCCEEEEEEECCTT-TCHHHHHHHHHHHHHHHHHTTCCC-----CCCCEEEEEEECCTTGGGGHHHHHHHHHGGGGCTT
T ss_pred cCCCeEEEEEcCCcC-CCHHHHHHHHHHHHHhCCCcccchhcccccccceEEEEeccCCCchHHHHHHHHHHHHHhhcCC
Confidence 345799999877543 23578899999999999754311 01 12334444433333 3345556666655 7
Q ss_pred cEEEEccCChhHHHHHHHhhcccCccEEecccCCCCCCC--CCCCceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEeC
Q 002267 116 VVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTS--LQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDD 193 (945)
Q Consensus 116 v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~--~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~ 193 (945)
+.+||.-..........+.+...+++.|-+.+....-.. ..+.. +.+...+..-+..+++.+...|-+++++|....
T Consensus 88 yk~II~n~~~~~~~~~i~~lkekrvDgIIi~~~~~ed~~~i~~~~d-i~V~~Dn~~Ggy~A~~~Li~~Ghk~Ia~Isgp~ 166 (371)
T 3qi7_A 88 VQAIVVSTDQAGLLPALQKVKEKRPEIITISAPMGDDKNQLSQFVD-VNLGVSAEERGKVLAERSKEMGAKAFIHYASTD 166 (371)
T ss_dssp EEEEEEECSSCCCHHHHHHHHHHCTTSEEEESSCCSCHHHHHHHSS-EEEECCHHHHHHHHHHHHHHTTCSCEEEEEETT
T ss_pred CeEEEEECCCcchHHHHHHHHhcCCCEEEEeccccccchhhcccCc-eEEEeChHHHHHHHHHHHHHCCCCEEEEEeccc
Confidence 777776433322233455666667776554443211100 00111 234444555555566889999999999998654
Q ss_pred Ccc----cchHHHHHHHHhhcCcEEEEeecCCCCCChHH---HHHHHHh-----hcc-CCceEEEEEcChhhHHHHHHHH
Q 002267 194 DYG----RNGISVLGDALSKKRAKISYKAPFSPGASRSA---INSLLVG-----ANL-MESRVFVVHVNPDTGLTIFSVA 260 (945)
Q Consensus 194 ~~g----~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d---~~~~l~~-----l~~-~~~~vivl~~~~~~~~~~~~~a 260 (945)
... ..-.+.+++++++.|+.+.....-.+ ..... ...+|.+ ++. ..++ -|++++...+..+++++
T Consensus 167 ~~~~~~~~~R~~Gyk~Al~e~Gi~~~~~~~~d~-t~e~G~~~a~~lL~~~~~~~~~~~~~~T-AIFatND~mAiG~ikal 244 (371)
T 3qi7_A 167 DLKDVNIAKRLEMIKETCKNIGLPFVQVNTPNI-NTEEDKNKVKQFLNEDIEKQVKKYGKDI-NVFGVNEYMDEVILTKA 244 (371)
T ss_dssp GGGSHHHHHHHHHHHHHHHHTTCCEEEEEECCC-SSTHHHHHHHHHHHHHHHHHHHHHCSCC-EEEESSHHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHHHcCCCceeecCCCC-chHHHHHHHHHHHhccccchhhccCCCc-EEEECCHHHHHHHHHHH
Confidence 322 22467899999999998765432221 11122 2222321 112 2334 45567888899999999
Q ss_pred HhCCCCC
Q 002267 261 KSLGMTA 267 (945)
Q Consensus 261 ~~~g~~~ 267 (945)
+++|...
T Consensus 245 ~e~Gi~V 251 (371)
T 3qi7_A 245 LELKYIV 251 (371)
T ss_dssp HHHCCBB
T ss_pred HHcCCcc
Confidence 9999754
No 164
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=95.60 E-value=0.02 Score=52.39 Aligned_cols=73 Identities=18% Similarity=0.143 Sum_probs=58.4
Q ss_pred HHHhhhheeecccCCCCCCCCccchhhHHHHHHHHhhccc--cCcccccchhhHHHHHHHHHHhhhhhhhhhhheeeee
Q 002267 619 FVGAVVWILEHRFNNEFRGPPSQQLVTIFWFSFSTMFFSH--RENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTV 695 (945)
Q Consensus 619 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 695 (945)
+.+.+++.+++.. .++...++.+++||++.++..-| .-.|.+..+|++.++|.++++.+.+...+.+++.+..
T Consensus 21 ~~a~~~~~~e~~~----~~~~~~~~~~a~yf~~~T~tTvGyGd~~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~ 95 (139)
T 3eff_K 21 AGSYLAVLAERGA----PGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVG 95 (139)
T ss_dssp HHHHHHHHTTSSC----TTCCCCCHHHHHHHHHHHHTTCCCSSSCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTH
T ss_pred HHHHHHHHHhcCC----CCcccCCHHHHHHHHheeeecccCCCCcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666543 23345678999999999997665 4589999999999999999999999999999988754
No 165
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=95.57 E-value=0.017 Score=53.67 Aligned_cols=76 Identities=16% Similarity=0.142 Sum_probs=61.5
Q ss_pred HHHHhhhheeecccCCCCCCCCccchhhHHHHHHHHhhccc--cCcccccchhhHHHHHHHHHHhhhhhhhhhhheeeee
Q 002267 618 LFVGAVVWILEHRFNNEFRGPPSQQLVTIFWFSFSTMFFSH--RENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTV 695 (945)
Q Consensus 618 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 695 (945)
++.+.+++.+|+.. .++...++.+++|+++.++...| .-.|.+..+|++.++|.++++.+.+..++.+++.++.
T Consensus 64 ~~~a~~~~~~E~~~----~~~~~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~~~~i~~~~~~ 139 (155)
T 2a9h_A 64 LAGSYLAVLAERGA----PGAALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLVFAAVATWFVG 139 (155)
T ss_dssp HHHHHHHHHHHTTS----SCSSTTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhccC----CCCccCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455577777653 23445679999999999998765 4479999999999999999999999999999999886
Q ss_pred cc
Q 002267 696 QQ 697 (945)
Q Consensus 696 ~~ 697 (945)
..
T Consensus 140 ~~ 141 (155)
T 2a9h_A 140 RE 141 (155)
T ss_dssp CC
T ss_pred HH
Confidence 54
No 166
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A
Probab=95.55 E-value=0.034 Score=59.32 Aligned_cols=90 Identities=21% Similarity=0.312 Sum_probs=52.9
Q ss_pred CCCChHHhhcCCCCeEEee-CchHHH---HHHHhhcccc-ccceecCCHHHHHHHHhcCCCCC----ceeEEecchhhHH
Q 002267 701 QIEGIDSLISSTEPIGVQD-GSFAWN---YLVDELKIAE-SRLVKLKNMEEYSIALARGPKGG----GVAAIVDELPYIE 771 (945)
Q Consensus 701 ~i~~~~dL~~~~~~v~~~~-~s~~~~---~l~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~g----~~~a~~~~~~~~~ 771 (945)
+|++++|| ++||+.. |+.... .+.+..+++. .+++.+.+..+...+|.. | ++|+++.+.....
T Consensus 111 ~i~s~~DL----K~i~~~~~gs~~~~~~~~l~~~~Gl~~dv~~v~~~~~~~~~~al~~----G~~~~~vDa~~~ep~~~~ 182 (321)
T 2x7q_A 111 DVTDAKQL----KRIGVSRIGSGSYVMSFVLAHQLGVPSFDQFQVLSNFKNLRDSVNL----KDGVEGSDAFMWEYFTSK 182 (321)
T ss_dssp TCSSGGGC----CEEEESSTTSHHHHHHHHHHHHHTSCCCCEEEECCSHHHHHHHHTT----CTTSCCCSEEEEEHHHHH
T ss_pred CCCChHHc----ceEEeeCCCcHHHHHHHHHHHhcCCCcceEEEEcCChHHHHHHHHc----CCCccceEEEEecCccch
Confidence 78999999 5799986 664332 2222344442 356667788899999998 8 8999876533333
Q ss_pred HHhccCCccEEEeCccccccc-eEEEecCC
Q 002267 772 LFMSKTNCEFRTVGQEFTKSG-WGFAFQRD 800 (945)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~k~ 800 (945)
..... ..+..+.+.....+ .+++++++
T Consensus 183 ~~~~~--g~~~~~~d~~~~~~~~~l~~~~~ 210 (321)
T 2x7q_A 183 KYYDN--HEIKQIDQIYTPWSSWVVATSSD 210 (321)
T ss_dssp HHHHT--TSEEEEEEEECSSCSEEEEEEHH
T ss_pred hhccC--CceEEccccCCCCceEEEEEcHH
Confidence 32222 23444433222222 35666653
No 167
>4ab5_A Transcriptional regulator, LYSR family; transcription factors; 2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A
Probab=95.39 E-value=0.092 Score=51.85 Aligned_cols=83 Identities=17% Similarity=0.148 Sum_probs=56.7
Q ss_pred CceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHHHHHHHHHcCcccEEEecE
Q 002267 485 MPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDI 564 (945)
Q Consensus 485 ~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~~ 564 (945)
++||||+... ....+..+++..+.++.+ .+++++.. ++..+++++|.+|++|+++...
T Consensus 8 g~l~Ig~~~~--------------~~~~~l~~~l~~f~~~~P-~i~i~i~~-------~~~~~~~~~l~~g~~Di~i~~~ 65 (222)
T 4ab5_A 8 GELRIAVECH--------------TCFDWLMPAMGEFRPMWP-QVELDIVS-------GFQADPVGLLLQHRADLAIVSE 65 (222)
T ss_dssp EEEEEECCCT--------------TTHHHHHHHHHHHHHHST-TEEEEEEC-------CCCSCTHHHHHTTSCSEEEESC
T ss_pred ceEEEEEehH--------------HHHHHHHHHHHHHHHHCC-CcEEEEec-------CCHHHHHHHHHcCCcCEEEecC
Confidence 5789988322 112456678888888875 35566664 5567889999999999998743
Q ss_pred EEecCcceeEEecccccccceEEEEEccC
Q 002267 565 TIVTNRTKLVDFTQPYMESGLVVVAPVQK 593 (945)
Q Consensus 565 ~~t~~r~~~~dfs~p~~~~~~~~vv~~~~ 593 (945)
.... ..+. ..++....+++++++..
T Consensus 66 ~~~~---~~~~-~~~l~~~~~~~v~~~~~ 90 (222)
T 4ab5_A 66 AEKQ---NGIS-FQPLFAYEMVGICAPDH 90 (222)
T ss_dssp CCCC---TTEE-EEEEEEEEEEEEECTTS
T ss_pred CCCc---CCeE-EEEeecCcEEEEecCCC
Confidence 3221 2232 46778888899888765
No 168
>2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta protein; 1.50A {Synechocystis SP}
Probab=95.16 E-value=0.068 Score=59.29 Aligned_cols=104 Identities=9% Similarity=0.066 Sum_probs=61.7
Q ss_pred HHhhcCCCCeEEe-eCchHHHHHH---Hhhcccc---ccceecCCHHHHHHHHhcCCCCCceeEEecchhhHHHHhccCC
Q 002267 706 DSLISSTEPIGVQ-DGSFAWNYLV---DELKIAE---SRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTN 778 (945)
Q Consensus 706 ~dL~~~~~~v~~~-~~s~~~~~l~---~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~ 778 (945)
+||. |++|++. .++....+++ ...++.. .+++.+ ...+...+|.. |++|+++...++......+..
T Consensus 151 ~dLk--Gk~iav~~~gs~~~~~l~~~L~~~Gl~~~~dv~~v~~-~~~~~~~aL~~----G~vDa~~~~eP~~~~~~~~g~ 223 (417)
T 2g29_A 151 AKVT--DPKVAMTFPGGTHDMWIRYWLAAGGMEPGKDFSTIVV-PPAQMVANVKV----NAMESFCVGEPWPLQTVNQGV 223 (417)
T ss_dssp HTSS--SCEEEESSTTSHHHHHHHHHHHHTTCCBTTTBEEEEC-CGGGHHHHHHT----TSCSEEEEETTHHHHHHHHTS
T ss_pred HhcC--CCEEEEeCCCCHHHHHHHHHHHHcCCCCCCceEEEEC-CHHHHHHHHHc----CCCCEEEeCCCHHHHHHHcCC
Confidence 6776 8999997 5665433332 2335443 355566 45788999999 899999988888766655522
Q ss_pred ccEEE-eCccccccc-eEEEecCC----Cc-----chHHHHHHHHhccc
Q 002267 779 CEFRT-VGQEFTKSG-WGFAFQRD----SP-----LAIDLSTAILQLSE 816 (945)
Q Consensus 779 ~~~~~-~~~~~~~~~-~~~~~~k~----sp-----l~~~i~~~i~~l~e 816 (945)
..... ..+.....+ .+++++++ .| +...+.++...+.+
T Consensus 224 ~~~~~~~~~~~~~~p~~~l~~~~~~~~~~p~~~~~~~~A~~~A~~~~~~ 272 (417)
T 2g29_A 224 GYQALTTGQLWKDHPEKAFGMRADWVDQNPKAAKALLMAVMEAQQWCDQ 272 (417)
T ss_dssp CEEEEEGGGTBTTCBCEEEEEEHHHHHHCHHHHHHHHHHHHHHHHHHHC
T ss_pred CEEEEechhhcCCCceEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHhC
Confidence 22222 223222223 46677654 34 34445566666655
No 169
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=95.03 E-value=0.086 Score=55.80 Aligned_cols=60 Identities=12% Similarity=0.018 Sum_probs=40.4
Q ss_pred CCCChHHhhcCCCCeEE-eeCchHHHHH---HHhhccccccc--eecCCHHHHHHHHhcCCCCCceeEEecc
Q 002267 701 QIEGIDSLISSTEPIGV-QDGSFAWNYL---VDELKIAESRL--VKLKNMEEYSIALARGPKGGGVAAIVDE 766 (945)
Q Consensus 701 ~i~~~~dL~~~~~~v~~-~~~s~~~~~l---~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~g~~~a~~~~ 766 (945)
++++++||. ++++++ ..|+.....+ .+..+.....+ ..+.+..+.+.+|.. |++|+.+..
T Consensus 122 ~i~sl~dL~--g~~i~~~~~gs~~~~~~~~~l~~~G~~~~~v~~~~~~~~~~~~~al~~----G~vda~~~~ 187 (314)
T 1us5_A 122 GIRTVADLK--GKRVVVGDVGSGTEQNARQILEAYGLTFDDLGQAIRVSASQGIQLMQD----KRADALFYT 187 (314)
T ss_dssp SCSSGGGGT--TSEEECCCTTCHHHHHHHHHHHHTTCCGGGSSEEECCCHHHHHHHHHT----TSCSEEEEE
T ss_pred CCCcHHHhC--CCEeecCCCCchHHHHHHHHHHHcCCCHHHcCceecCCHHHHHHHHHc----CCccEEEEc
Confidence 678999998 677877 4566443322 22345543333 356678899999998 899988865
No 170
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=94.93 E-value=0.067 Score=53.39 Aligned_cols=83 Identities=12% Similarity=-0.058 Sum_probs=58.8
Q ss_pred CceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHHHHHHHHHcCcccEEEecE
Q 002267 485 MPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDI 564 (945)
Q Consensus 485 ~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~~ 564 (945)
+.||||+... ....+..+++..+.+..+ .+++++.. ++..+++++|.+|++|+++...
T Consensus 11 g~l~Ig~~~~--------------~~~~~l~~~l~~~~~~~P-~v~i~~~~-------~~~~~~~~~l~~g~~Dl~i~~~ 68 (232)
T 3ho7_A 11 GRLNIAVLPT--------------IAPYLLPRVFPIWKKELA-GLEIHVSE-------MQTSRCLASLLSGEIDMAIIAS 68 (232)
T ss_dssp EEEEEEECTT--------------THHHHHHHHHHHHHHHST-TEEEEEEE-------CCHHHHHHHHHHTSCSEEEESS
T ss_pred eeEEEEeccc--------------cchhhhHHHHHHHHHHCC-CcEEEEEe-------CCHHHHHHHHHcCCCCEEEEcC
Confidence 5799998322 112466778888888876 45677765 6788999999999999998754
Q ss_pred EEecCcceeEEecccccccceEEEEEccC
Q 002267 565 TIVTNRTKLVDFTQPYMESGLVVVAPVQK 593 (945)
Q Consensus 565 ~~t~~r~~~~dfs~p~~~~~~~~vv~~~~ 593 (945)
.... ..+. +.++....+++++++..
T Consensus 69 ~~~~---~~l~-~~~l~~~~~~~v~~~~h 93 (232)
T 3ho7_A 69 KAET---EGLE-DDLLYYEEFLGYVSRCE 93 (232)
T ss_dssp CCCC---TTEE-EEEEEEEEEEEEECTTS
T ss_pred CCCC---CCeE-EEEecccCEEEEEcCCC
Confidence 3322 2232 46778888999988765
No 171
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=94.73 E-value=0.051 Score=49.43 Aligned_cols=57 Identities=12% Similarity=0.295 Sum_probs=50.2
Q ss_pred cchhhHHHHHHHHhhccc--cCcccccchhhHHHHHHHHHHhhhhhhhhhhheeeeecc
Q 002267 641 QQLVTIFWFSFSTMFFSH--RENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQ 697 (945)
Q Consensus 641 ~~~~~~~~~~~~~l~~~~--~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~ 697 (945)
.++.+++|+++.++..-| .-.|.+..+|++.++|.++++.+.+...+.+++.+....
T Consensus 42 ~~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~ 100 (137)
T 4h33_A 42 NNYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKK 100 (137)
T ss_dssp CSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTT
T ss_pred CCHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999998665 458999999999999999999999999999999886543
No 172
>2xed_A Putative maleate isomerase; nicotinic acid catabolism, cofactor-independent CIS-trans isomerase; 1.95A {Nocardia farcinica} PDB: 2xec_A
Probab=93.82 E-value=0.77 Score=47.17 Aligned_cols=124 Identities=14% Similarity=0.051 Sum_probs=80.5
Q ss_pred HHHHHHhcCcEEEEccCChhHHH--------HHHHhhccc-----CccEEecccCCCCCCCCCCCceEEecCChhHHHHH
Q 002267 107 EALQLMENEVVAAIGPQSSGIAH--------VISHVVNEL-----NVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHA 173 (945)
Q Consensus 107 ~a~~li~~~v~aiiGp~~s~~~~--------~va~~~~~~-----~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~a 173 (945)
.+.+|.+.++.+|+-+-++.... ....+.+.. ++|+++. ..+
T Consensus 82 aa~~L~~~g~d~IviaCnta~~~~G~~~~~~~~~~l~~~~~~~~~~iPv~~~-------------------------~~A 136 (273)
T 2xed_A 82 CVLEIADAAPEVILYACLVAVMVGGPGEHHRVESAVAEQLATGGSQALVRSS-------------------------AGA 136 (273)
T ss_dssp HHHHHHTTCCSEEEECCHHHHHTTCTTHHHHHHHHHHHHHHHTTCCCEEEEH-------------------------HHH
T ss_pred HHHHHhhcCCCEEEECCChHHHhcccchhHHHHHHHHHHhhccCCCCCEecH-------------------------HHH
Confidence 44445455888887654443221 123344445 8888862 255
Q ss_pred HHHHHHHcCCeEEEEEEEeCCcccchHHHHHHHHhhcCcEEEEeecCCC-------CCChHHHHHHHHhhccCCceEEEE
Q 002267 174 VADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSP-------GASRSAINSLLVGANLMESRVFVV 246 (945)
Q Consensus 174 i~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~-------~~~~~d~~~~l~~l~~~~~~vivl 246 (945)
.+..++..|-++|+++. .|.....+.+.+.+++.|+++........ ..+...+...++++...++|+||+
T Consensus 137 ~~~al~~~g~~rvgvlt---p~~~~~~~~~~~~l~~~Gi~v~~~~~~~~~~~~~~g~~~~~~l~~~~~~l~~~gadaIvL 213 (273)
T 2xed_A 137 LVEGLRALDAQRVALVT---PYMRPLAEKVVAYLEAEGFTISDWRALEVADNTEVGCIPGEQVMAAARSLDLSEVDALVI 213 (273)
T ss_dssp HHHHHHHTTCCEEEEEE---CSCHHHHHHHHHHHHHTTCEEEEEEECCCCBHHHHHTCCHHHHHHHHHHSCCTTCSEEEE
T ss_pred HHHHHHHcCCCeEEEEc---CChhhhHHHHHHHHHHCCCEEeccccCCCccchhhcccCHHHHHHHHHHHhhCCCCEEEE
Confidence 55566777889999995 56666667888999999999876544332 123456777888887778999999
Q ss_pred E-cChhhHHHHHH
Q 002267 247 H-VNPDTGLTIFS 258 (945)
Q Consensus 247 ~-~~~~~~~~~~~ 258 (945)
. |..-....+..
T Consensus 214 g~CT~l~~~~~~~ 226 (273)
T 2xed_A 214 SCAVQMPSLPLVE 226 (273)
T ss_dssp ESSSSSCCTTHHH
T ss_pred cCCCCcchHHhHH
Confidence 9 86654433333
No 173
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=93.40 E-value=0.94 Score=45.18 Aligned_cols=84 Identities=13% Similarity=0.123 Sum_probs=58.6
Q ss_pred CCceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHHHHHHHHHcCcccEEEec
Q 002267 484 GMPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGD 563 (945)
Q Consensus 484 g~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~ 563 (945)
.+.||||+... . ...+...++..+.++.+ .+++.+.. ++...++++|.+|++|+++..
T Consensus 18 ~g~l~Ig~~~~--~------------~~~~l~~~l~~f~~~~P-~i~l~~~~-------~~~~~~~~~l~~g~~Dl~i~~ 75 (241)
T 3oxn_A 18 DQTFTIATTDY--A------------MQTILPFALPRIYQEAP-NVSFNFLP-------LQHDRLSDQLTYEGADLAICR 75 (241)
T ss_dssp CCEEEEEECSH--H------------HHHTHHHHHHHHHHHCT-TCEEEEEE-------CCGGGHHHHHHTSCCSEEEEC
T ss_pred CceEEEEechH--H------------HHHHHHHHHHHHHHHCC-CCEEEEEE-------CCcccHHHHHHcCCCCEEEec
Confidence 46799999322 1 12456778889888875 35577665 667899999999999999874
Q ss_pred EEEecCcceeEEecccccccceEEEEEccC
Q 002267 564 ITIVTNRTKLVDFTQPYMESGLVVVAPVQK 593 (945)
Q Consensus 564 ~~~t~~r~~~~dfs~p~~~~~~~~vv~~~~ 593 (945)
.. .....+. ..++....+++++++..
T Consensus 76 ~~---~~~~~~~-~~~l~~~~~~~v~~~~h 101 (241)
T 3oxn_A 76 PT---GPVEPLR-SEILGRVGVLCLLSKQH 101 (241)
T ss_dssp CS---SCCTTEE-EEEEECCCEEEEEETTS
T ss_pred CC---CCCccce-eEEeecccEEEEEeCCC
Confidence 22 2222233 46778889999998765
No 174
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=93.36 E-value=0.012 Score=55.74 Aligned_cols=73 Identities=19% Similarity=0.188 Sum_probs=57.6
Q ss_pred HhhhheeecccCCCCCCCCccchhhHHHHHHHHhhccc--cCcccccchhhHHHHHHHHHHhhhhhhhhhhheeeeecc
Q 002267 621 GAVVWILEHRFNNEFRGPPSQQLVTIFWFSFSTMFFSH--RENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQ 697 (945)
Q Consensus 621 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~ 697 (945)
+.++|.+++.. .++...++.+++||++.++...| .-.|.+..+|++.++|.++++++.+...+.+++.++...
T Consensus 50 a~~~~~~e~~~----~~~~~~~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~~~ 124 (166)
T 3pjs_K 50 SYLAVLAERGA----PGAQLITYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVGQE 124 (166)
T ss_dssp SSSSSSTTSSS----TTCCCCSTTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSSSH
T ss_pred HHHHHHHhcCC----CCcccCCHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444432 33445678999999999997665 458999999999999999999999999999999987543
No 175
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1
Probab=93.02 E-value=0.17 Score=52.54 Aligned_cols=102 Identities=16% Similarity=-0.058 Sum_probs=56.5
Q ss_pred HHhhcCCCCeEEe-eCchHHHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceeEEecc-hhhHHHHhccCCcc-EE
Q 002267 706 DSLISSTEPIGVQ-DGSFAWNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDE-LPYIELFMSKTNCE-FR 782 (945)
Q Consensus 706 ~dL~~~~~~v~~~-~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~-~~~~~~~~~~~~~~-~~ 782 (945)
+||. |++|++. .++.....++..+. ..+++ +.+..+...+|.+ |++|+++.. .+... +... ..+ +.
T Consensus 99 ~DLk--GK~Iav~~~~s~~~~ll~~~l~--~~~~~-~~~~~~~~~al~~----G~vDa~~~~~~~~~~-~~~~-g~~~~~ 167 (280)
T 1zbm_A 99 ISLD--GKRIAVPGRYTTANLLLKLAVE--DFEPV-EMPFDRIIQAVLD----EEVDAGLLIHEGQIT-YADY-GLKCVL 167 (280)
T ss_dssp CCCT--TCEEEESCTTSHHHHHHHHHCS--SCEEE-ECCGGGHHHHHHT----TSSSEEEECSGGGGT-GGGG-TCEEEE
T ss_pred hhcC--CCEEEecCCCcHHHHHHHHHhc--cCceE-ecCHHHHHHHHHc----CCCCEEEEechHHhH-HHhc-CCeEec
Confidence 6775 8999996 45544433433221 12343 3466789999998 899998743 44443 2222 221 11
Q ss_pred EeCcc----c-cccc-eEEEecCC-Cc-chHHHHHHHHhccccc
Q 002267 783 TVGQE----F-TKSG-WGFAFQRD-SP-LAIDLSTAILQLSENG 818 (945)
Q Consensus 783 ~~~~~----~-~~~~-~~~~~~k~-sp-l~~~i~~~i~~l~e~G 818 (945)
-.++. . ...+ .+++++++ .| +.+.|.+++.+..+..
T Consensus 168 ~~~~~~~~~~g~~~~~~~~~~~~~~~p~~v~~~~~a~~~a~~~~ 211 (280)
T 1zbm_A 168 DLWDWWSEQVKLPLPLGLNAIRRDLSVEVQEEFLRAMRESIAFA 211 (280)
T ss_dssp EHHHHHHTTCSSCEEEEEEEEETTSCHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHhhCCCCCeeEEEEcccCCHHHHHHHHHHHHHHHHHH
Confidence 11110 0 1112 35778887 56 7777777777665443
No 176
>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional regulator LYSR struc genomics, PSI-2, protein structure initiative; 2.05A {Escherichia coli} PDB: 3hfu_A
Probab=92.88 E-value=1.7 Score=42.98 Aligned_cols=83 Identities=13% Similarity=0.183 Sum_probs=56.9
Q ss_pred CceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHHHHHHHHHcCcccEEEecE
Q 002267 485 MPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDI 564 (945)
Q Consensus 485 ~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~~ 564 (945)
++||||++.. . ...+-..++..+.++.+ .+++++.. ++...++++|.+|++|+++...
T Consensus 30 g~l~Ig~~~~--~------------~~~~l~~~l~~f~~~~P-~v~l~~~~-------~~~~~~~~~l~~g~~Dl~i~~~ 87 (238)
T 2hxr_A 30 GSLRIAVTPT--F------------TSYFIGPLMADFYARYP-SITLQLQE-------MSQEKIEDMLCRDELDVGIAFA 87 (238)
T ss_dssp -CEEEEECHH--H------------HTTTHHHHHHHHHHHCT-TSCEEEEE-------CCHHHHHHHHHTTSCSEEEEES
T ss_pred CeEEEeechh--h------------HHHHHHHHHHHHHHhCC-CcEEEEEE-------CCHHHHHHHHHcCCCcEEEEcC
Confidence 5799998321 1 12356678888888886 46677775 6678999999999999998632
Q ss_pred EEecCcceeEEecccccccceEEEEEccC
Q 002267 565 TIVTNRTKLVDFTQPYMESGLVVVAPVQK 593 (945)
Q Consensus 565 ~~t~~r~~~~dfs~p~~~~~~~~vv~~~~ 593 (945)
. .....+. +.++....+++++++..
T Consensus 88 ~---~~~~~l~-~~~l~~~~~~~v~~~~h 112 (238)
T 2hxr_A 88 P---VHSPELE-AIPLLTESLALVVAQHH 112 (238)
T ss_dssp S---CCCTTEE-EEEEEEEEEEEEEETTS
T ss_pred C---CCcccce-eeeeccCcEEEEEcCCC
Confidence 1 1122233 36788888999988765
No 177
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=92.69 E-value=0.18 Score=41.03 Aligned_cols=52 Identities=12% Similarity=0.113 Sum_probs=46.2
Q ss_pred chhhHHHHHHHHhhccc--cCcccccchhhHHHHHHHHHHhhhhhhhhhhheee
Q 002267 642 QLVTIFWFSFSTMFFSH--RENTVSSLGRVVLIVWLFVVLIINSSYTASLTSIL 693 (945)
Q Consensus 642 ~~~~~~~~~~~~l~~~~--~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~L 693 (945)
++.+++|+++.++..-+ .-.|.+..+|++.+.|.++++.+.....+.+++.+
T Consensus 28 ~~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l 81 (82)
T 3ldc_A 28 SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL 81 (82)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999998765 45899999999999999999999999999888754
No 178
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=92.45 E-value=1.5 Score=45.54 Aligned_cols=83 Identities=16% Similarity=0.123 Sum_probs=55.3
Q ss_pred CceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHHHHHHHHHcCcccEEEecE
Q 002267 485 MPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDI 564 (945)
Q Consensus 485 ~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~~ 564 (945)
++|+||++.. + ...+..+++..+.++.+ .+++++.. ++..+++.+|.+|++|+++...
T Consensus 95 g~l~i~~~~~--~------------~~~~l~~~l~~f~~~~P-~i~i~l~~-------~~~~~~~~~l~~g~~Dl~i~~~ 152 (306)
T 3fzv_A 95 GQIDIGCFET--V------------APLYLPGLIAGFRQAYP-GVEIRIRD-------GEQQELVQGLTSGRFDLAFLYE 152 (306)
T ss_dssp EEEEEEEEGG--G------------HHHHHHHHHHHHHHHCT-TEEEEEEE-------ECHHHHHHHHHHTSCSEEEECS
T ss_pred ceEEEEechh--h------------hHHHHHHHHHHHHHHCC-CeEEEEEe-------CCHHHHHHHHHCCCccEEEEec
Confidence 5699998322 1 12456778888888875 35666665 5688999999999999998632
Q ss_pred EEecCcceeEEeccccc-ccceEEEEEccC
Q 002267 565 TIVTNRTKLVDFTQPYM-ESGLVVVAPVQK 593 (945)
Q Consensus 565 ~~t~~r~~~~dfs~p~~-~~~~~~vv~~~~ 593 (945)
. .....+. ..++. ...++++++...
T Consensus 153 ~---~~~~~l~-~~~l~~~~~~~~v~~~~~ 178 (306)
T 3fzv_A 153 H---DLDSTIE-TEPLMPPQRPHALLPEGH 178 (306)
T ss_dssp S---SCCTTEE-EEESSCCBCCEEEEETTC
T ss_pred c---ccccccc-eeeeeeccccEEEecCCC
Confidence 1 1122232 34555 677778887665
No 179
>1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A
Probab=92.43 E-value=0.15 Score=50.33 Aligned_cols=83 Identities=11% Similarity=0.115 Sum_probs=58.0
Q ss_pred CceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHHHHHHHHHcCcccEEEecE
Q 002267 485 MPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDI 564 (945)
Q Consensus 485 ~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~~ 564 (945)
++||||+... ....+-.+++..+.++.+ .+++++.. ++...++++|.+|++|+++...
T Consensus 5 g~lrIg~~~~--------------~~~~~l~~~l~~f~~~~P-~v~l~l~~-------~~~~~~~~~l~~g~~Dl~i~~~ 62 (219)
T 1i6a_A 5 GPLHIGLIPT--------------VGPYLLPHIIPMLHQTFP-KLEMYLHE-------AQTHQLLAQLDSGKLDAVILAL 62 (219)
T ss_dssp EEEEEEECTT--------------THHHHHHHHHHHHHHHCT-TEEEEEEE-------CCHHHHHHHHHHTSCSEEEEEC
T ss_pred eEEEEEeccc--------------hhhhhhhHHHHHHHHHCC-CeEEEEEE-------CChHHHHHHHHcCCeeEEEecC
Confidence 5699998322 113466788899988886 46677765 6789999999999999998532
Q ss_pred EEecCcceeEEecccccccceEEEEEccC
Q 002267 565 TIVTNRTKLVDFTQPYMESGLVVVAPVQK 593 (945)
Q Consensus 565 ~~t~~r~~~~dfs~p~~~~~~~~vv~~~~ 593 (945)
. .....+. +.|+....+++++++..
T Consensus 63 ~---~~~~~l~-~~~l~~~~~~~v~~~~h 87 (219)
T 1i6a_A 63 V---KESEAFI-EVPLFDEPMLLAIYEDH 87 (219)
T ss_dssp C---GGGTTSE-EEEEEEEEEEEEEETTS
T ss_pred C---CCCCCcc-eeeeecccEEEEEcCCC
Confidence 1 1112222 35788888999988765
No 180
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314, rhodococcus RHA1, structural genomics, PSI-2; HET: MSE; 2.05A {Rhodococcus SP}
Probab=91.90 E-value=2.1 Score=41.30 Aligned_cols=83 Identities=14% Similarity=0.077 Sum_probs=56.5
Q ss_pred CceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHHHHHHHHHcCcccEEEecE
Q 002267 485 MPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDI 564 (945)
Q Consensus 485 ~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~~ 564 (945)
++||||++.. . ...+-.+++..+.++.+ .+++++.. ++..++.++|.+|++|+++...
T Consensus 5 g~l~Ig~~~~--~------------~~~~l~~~l~~f~~~~P-~i~i~l~~-------~~~~~l~~~l~~g~~Dl~i~~~ 62 (209)
T 2ql3_A 5 GPIAVGCYPA--L------------GPTILPSMLYAFTAEYP-RASVEFRE-------DTQNRLRTQLEGGELDVAIVYD 62 (209)
T ss_dssp EEEEEEECGG--G------------TTTTHHHHHHHHHHHCT-TEEEEEEE-------CCHHHHHHHHHTTSCSEEEEES
T ss_pred eeEEEeechh--h------------hhhhHHHHHHHHHHHCC-CceEEEEE-------CcHHHHHHHHHcCCccEEEEec
Confidence 5689998322 1 12356778899988886 46677765 6688999999999999998532
Q ss_pred EEecCcceeEEecccccccceEEEEEccC
Q 002267 565 TIVTNRTKLVDFTQPYMESGLVVVAPVQK 593 (945)
Q Consensus 565 ~~t~~r~~~~dfs~p~~~~~~~~vv~~~~ 593 (945)
......+. +.++....++++++...
T Consensus 63 ---~~~~~~l~-~~~l~~~~~~~v~~~~h 87 (209)
T 2ql3_A 63 ---LDLSPEWQ-TVPLMTREPMVVLGAEH 87 (209)
T ss_dssp ---SSCCTTEE-EEEEEEECCEEEEETTC
T ss_pred ---CCCCCCce-EEEeecCceEEEEeCCC
Confidence 11112232 35777888888887654
No 181
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=91.88 E-value=0.15 Score=43.04 Aligned_cols=59 Identities=12% Similarity=0.278 Sum_probs=51.3
Q ss_pred cchhhHHHHHHHHhhccc--cCcccccchhhHHHHHHHHHHhhhhhhhhhhheeeeecccc
Q 002267 641 QQLVTIFWFSFSTMFFSH--RENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLT 699 (945)
Q Consensus 641 ~~~~~~~~~~~~~l~~~~--~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~ 699 (945)
.++.+++|+++.++..-+ .-.|.+..+|++.++|.++++.+.....+.+++.++.++..
T Consensus 31 ~~~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~~~~~ 91 (97)
T 3ouf_A 31 LRPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSIL 91 (97)
T ss_dssp CCHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CCHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 368999999999998765 44899999999999999999999999999999988766543
No 182
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=91.63 E-value=0.27 Score=51.79 Aligned_cols=62 Identities=13% Similarity=0.112 Sum_probs=53.0
Q ss_pred CCCccchhhHHHHHHHHhhccc--cCcccccchhhHHHHHHHHHHhhhhhhhhhhheeeeeccc
Q 002267 637 GPPSQQLVTIFWFSFSTMFFSH--RENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQL 698 (945)
Q Consensus 637 ~~~~~~~~~~~~~~~~~l~~~~--~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~ 698 (945)
+....++.+++||++.++...| ...|.+..+|++.++|.++++++.+.-++.+++.++.+..
T Consensus 91 ~~~~~s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~~~ 154 (333)
T 1p7b_A 91 NQSPPGFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARPRA 154 (333)
T ss_dssp CSSSSSTHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred CCCCCcHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345678999999999998665 4479999999999999999999999999999999887653
No 183
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding DO cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1
Probab=91.03 E-value=3.9 Score=40.10 Aligned_cols=84 Identities=15% Similarity=0.151 Sum_probs=57.7
Q ss_pred CceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHHHHHHHHHcCcccEEEecE
Q 002267 485 MPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDI 564 (945)
Q Consensus 485 ~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~~ 564 (945)
++||||++.. . ...+-.+++..+.++.+ .+++++.. ++...++++|.+|++|+++...
T Consensus 14 g~lrIg~~~~--~------------~~~~l~~~l~~f~~~~P-~v~l~l~~-------~~~~~~~~~l~~g~~Dl~i~~~ 71 (228)
T 2fyi_A 14 GVLTIATTHT--Q------------ARYSLPEVIKAFRELFP-EVRLELIQ-------GTPQEIATLLQNGEADIGIASE 71 (228)
T ss_dssp EEEEEEECHH--H------------HHHTHHHHHHHHHHHCT-TEEEEEEE-------CCHHHHHHHHHHTSCSEEEESS
T ss_pred ceEEEeeccc--h------------HHHHHHHHHHHHHHHCC-CcEEEEEe-------CCHHHHHHHHHcCCccEEEEec
Confidence 5799998321 1 12456788999998886 46677765 6788999999999999998632
Q ss_pred EEecCcceeEEecccccccceEEEEEccC
Q 002267 565 TIVTNRTKLVDFTQPYMESGLVVVAPVQK 593 (945)
Q Consensus 565 ~~t~~r~~~~dfs~p~~~~~~~~vv~~~~ 593 (945)
. ......+. ..++....+++++++..
T Consensus 72 ~--~~~~~~l~-~~~l~~~~~~~v~~~~h 97 (228)
T 2fyi_A 72 R--LSNDPQLV-AFPWFRWHHSLLVPHDH 97 (228)
T ss_dssp S--STTCTTEE-EEEEEEECEEEEEETTC
T ss_pred c--cCCCCCce-EEEeeecceEEEecCCC
Confidence 1 11112232 35778888888888765
No 184
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=90.93 E-value=3 Score=43.39 Aligned_cols=83 Identities=14% Similarity=0.113 Sum_probs=54.9
Q ss_pred CceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHHHHHHHHHcCcccEEEec-
Q 002267 485 MPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGD- 563 (945)
Q Consensus 485 ~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~- 563 (945)
++||||++.. . ...+..+++..+.++.+ .+++++.. ++..+++++|.+|++|+++..
T Consensus 101 ~~l~Ig~~~~--~------------~~~~l~~~l~~f~~~~P-~i~i~l~~-------~~~~~~~~~l~~g~~Dl~i~~~ 158 (310)
T 2esn_A 101 RTFVFAATDY--T------------AFALLPPLMNRLQHSAP-GVRLRLVN-------AERKLSVEALASGRIDFALGYD 158 (310)
T ss_dssp CEEEEECCHH--H------------HHHHHHHHHHHHHHHST-TCEEEEEC-------CSSSCCHHHHHHTSSSEEEECC
T ss_pred ceEEEEeChH--H------------HHHHHHHHHHHHHHHCC-CeEEEEEe-------CCcccHHHHHHcCCCCEEEecC
Confidence 5799998311 1 12356678888888876 35676664 445677889999999999864
Q ss_pred --EEEecCcceeEEecccccccceEEEEEccC
Q 002267 564 --ITIVTNRTKLVDFTQPYMESGLVVVAPVQK 593 (945)
Q Consensus 564 --~~~t~~r~~~~dfs~p~~~~~~~~vv~~~~ 593 (945)
.... ...+. ..|+....++++++...
T Consensus 159 ~~~~~~---~~~l~-~~~l~~~~~~~v~~~~~ 186 (310)
T 2esn_A 159 EEHERL---PEGIQ-AHDWFADRYVVVARRDH 186 (310)
T ss_dssp STTCCC---CTTEE-EEEEEEECEEEEEESSC
T ss_pred cccccC---CcCcc-eeeeeccceEEEEeCCC
Confidence 2211 11222 45777888888888765
No 185
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=90.78 E-value=0.33 Score=42.35 Aligned_cols=55 Identities=13% Similarity=0.301 Sum_probs=48.1
Q ss_pred chhhHHHHHHHHhhccc--cCcccccchhhHHHHHHHHHHhhhhhhhhhhheeeeec
Q 002267 642 QLVTIFWFSFSTMFFSH--RENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQ 696 (945)
Q Consensus 642 ~~~~~~~~~~~~l~~~~--~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~ 696 (945)
++.+++|+++.++...| .-.|.+..+|++.++|.++++.+.....+.+++.++..
T Consensus 49 ~~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~ 105 (114)
T 2q67_A 49 RPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLP 105 (114)
T ss_dssp CHHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred CHHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999998766 44799999999999999999999999999999887553
No 186
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1
Probab=90.76 E-value=0.81 Score=45.18 Aligned_cols=72 Identities=7% Similarity=-0.087 Sum_probs=45.0
Q ss_pred eeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHHHHHHHHHcCc-ccEEEecEEEecC---cceeEE--ecccccccceE
Q 002267 513 YCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNK-FDAAVGDITIVTN---RTKLVD--FTQPYMESGLV 586 (945)
Q Consensus 513 ~~~dll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~-~D~~~~~~~~t~~---r~~~~d--fs~p~~~~~~~ 586 (945)
+.-++++.+.++-|.++++ .. ++...++.+|.+|+ +|+++..-....+ ....+. -..|+....++
T Consensus 13 ~l~~~~~~F~~~p~i~v~~--~~-------~~s~~l~~~l~~g~~~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 83 (231)
T 1atg_A 13 TLEQLAGQFAKQTGHAVVI--SS-------GSSGPVYAQIVNGAPYNVFFSADEKSPEKLDNQGFALPGSRFTYAIGKLV 83 (231)
T ss_dssp HHHHHHHHHHHHHCCCEEE--EE-------ECHHHHHHHHHTTCCCSEEECSSSHHHHHHHHTTCBCTTCCEEEEECCEE
T ss_pred HHHHHHHHHHhccCCeEEE--EE-------CCcHHHHHHHHcCCCCCEEEeCChhHHHHHHhcCCCcCCceeEeeeeeEE
Confidence 3446778887776766444 33 45688999999998 9998752211100 111111 24678888888
Q ss_pred EEEEccC
Q 002267 587 VVAPVQK 593 (945)
Q Consensus 587 ~vv~~~~ 593 (945)
+++++..
T Consensus 84 lv~~~~~ 90 (231)
T 1atg_A 84 LWSAKPG 90 (231)
T ss_dssp EEESSTT
T ss_pred EEEcCCC
Confidence 8887665
No 187
>2i49_A Bicarbonate transporter; alpha-beta protein, C-clamp, ABC transporter, periplasmic SO binding protein, bicarbonate-binding protein; 1.35A {Synechocystis SP} PDB: 2i48_A 2i4b_A 2i4c_A
Probab=90.58 E-value=0.54 Score=52.05 Aligned_cols=67 Identities=9% Similarity=0.050 Sum_probs=45.8
Q ss_pred hHHh-hcCCC--CeEEe-eCchHHHHHH---Hhhcccc---ccceecCCHHHHHHHHhcCCCCCceeEEecchhhHHHHh
Q 002267 705 IDSL-ISSTE--PIGVQ-DGSFAWNYLV---DELKIAE---SRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFM 774 (945)
Q Consensus 705 ~~dL-~~~~~--~v~~~-~~s~~~~~l~---~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~ 774 (945)
++|| .+.|+ +|++. .++....++. ...+++. -+++.+ ...+...+|.+ |++|+++...++.....
T Consensus 153 i~dL~k~~GK~~~Iav~~~gs~~~~~l~~~L~~~Gl~p~~DV~~v~~-~~~~~~~aL~~----G~iDa~~~~eP~~~~a~ 227 (429)
T 2i49_A 153 IKGFNKTNGRKFKAAHTFPNVNQDFWIRYWFAAGGVDPDTDIDLLAV-PPAETVQGMRN----GTMDAFSTGDPWPYRIV 227 (429)
T ss_dssp HHTHHHHHSSCCEEEESSTTSHHHHHHHHHHHHTTCCTTTTSEEEEC-CHHHHHHHHHH----TCCCEEEEETTHHHHHH
T ss_pred HHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHhcCCCCCCcEEEEEC-ChHHHHHHHHc----CCccEEEeccchHHHHH
Confidence 6888 64466 89997 5764433322 2345543 345555 67889999999 89999998888876665
Q ss_pred cc
Q 002267 775 SK 776 (945)
Q Consensus 775 ~~ 776 (945)
.+
T Consensus 228 ~~ 229 (429)
T 2i49_A 228 TE 229 (429)
T ss_dssp HT
T ss_pred HC
Confidence 55
No 188
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=90.50 E-value=0.44 Score=55.03 Aligned_cols=120 Identities=8% Similarity=0.058 Sum_probs=72.0
Q ss_pred chhhHHHHHHHHhhccc--cCcccccchhhHHHHHHHHHHhhhhhhhhh-hheeeeeccccCC-----CCChHHhhcCCC
Q 002267 642 QLVTIFWFSFSTMFFSH--RENTVSSLGRVVLIVWLFVVLIINSSYTAS-LTSILTVQQLTSQ-----IEGIDSLISSTE 713 (945)
Q Consensus 642 ~~~~~~~~~~~~l~~~~--~~~p~s~~~R~~~~~w~~~~lil~~~Yta~-L~s~Lt~~~~~~~-----i~~~~dL~~~~~ 713 (945)
++..++||++.++...| .-.|.+..+|++.++|.++++.+.....+. ++++++.+..+.. .....+.. ..
T Consensus 51 ~~~~~~y~~~~t~tTvGygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 128 (565)
T 4gx0_A 51 SFMAGIYWTITVMTTLGFGDITFESDAGYLFASIVTVSGVIFLDIILPFGFVSMFLAPWIERRLRYHPTIELPDDT--RG 128 (565)
T ss_dssp CHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTSCCCBCCCCTTC--CS
T ss_pred chhhhhheeeeeeeeecCCCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc--CC
Confidence 68999999999998765 447899999999999999999888877776 5555433221111 11111111 22
Q ss_pred CeEEe-eCchHHHHHHHhhccccccceecCCHHHHHHHHhcCCCCC-ceeEEecchh
Q 002267 714 PIGVQ-DGSFAWNYLVDELKIAESRLVKLKNMEEYSIALARGPKGG-GVAAIVDELP 768 (945)
Q Consensus 714 ~v~~~-~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g-~~~a~~~~~~ 768 (945)
++.+. .|.+..... +.+......++..+..++..+.+.+ . ++.++.++..
T Consensus 129 hviI~G~g~~g~~la-~~L~~~~~~vvvid~~~~~~~~~~~----~~~~~~i~Gd~~ 180 (565)
T 4gx0_A 129 HILIFGIDPITRTLI-RKLESRNHLFVVVTDNYDQALHLEE----QEGFKVVYGSPT 180 (565)
T ss_dssp CEEEESCCHHHHHHH-HHTTTTTCCEEEEESCHHHHHHHHH----SCSSEEEESCTT
T ss_pred eEEEECCChHHHHHH-HHHHHCCCCEEEEECCHHHHHHHHH----hcCCeEEEeCCC
Confidence 33333 344443333 3332233345555666666666665 4 5666666643
No 189
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=90.25 E-value=4.8 Score=41.24 Aligned_cols=83 Identities=7% Similarity=-0.016 Sum_probs=57.3
Q ss_pred CceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHHHHHHHHHcCcccEEEecE
Q 002267 485 MPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDI 564 (945)
Q Consensus 485 ~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~~ 564 (945)
++||||++.. + ...+..+++..+.++.+ .+++++.. ++..+++.+|.+|++|+++...
T Consensus 91 g~l~Ig~~~~--~------------~~~~l~~~l~~f~~~~P-~i~l~~~~-------~~~~~~~~~l~~g~~Dl~i~~~ 148 (294)
T 1ixc_A 91 GELSVAYFGT--P------------IYRSLPLLLRAFLTSTP-TATVSLTH-------MTKDEQVEGLLAGTIHVGFSRF 148 (294)
T ss_dssp EEEEEEECSG--G------------GGTHHHHHHHHHHHHCT-TEEEEEEE-------CCHHHHHHHHHHTSCSEEEESC
T ss_pred ceEEEEEccc--h------------hHHHHHHHHHHHHHHCC-CcEEEEEe-------CCHHHHHHHHHCCCccEEEEec
Confidence 5799999422 1 12356678888888876 45677665 5678899999999999998643
Q ss_pred EEecCcceeEEecccccccceEEEEEccC
Q 002267 565 TIVTNRTKLVDFTQPYMESGLVVVAPVQK 593 (945)
Q Consensus 565 ~~t~~r~~~~dfs~p~~~~~~~~vv~~~~ 593 (945)
... ...+. ..|+....++++++...
T Consensus 149 ~~~---~~~l~-~~~l~~~~~~~v~~~~~ 173 (294)
T 1ixc_A 149 FPR---HPGIE-IVNIAQEDLYLAVHRSQ 173 (294)
T ss_dssp CCC---CTTEE-EEEEEEEEEEEEEEGGG
T ss_pred CCC---CCCce-EEEEeeccEEEEEeCCC
Confidence 221 12222 36777888888888765
No 190
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=90.22 E-value=0.38 Score=50.00 Aligned_cols=62 Identities=11% Similarity=0.118 Sum_probs=52.6
Q ss_pred CCCCccchhhHHHHHHHHhhccc--cCcccccchhhHHHHHHHHHHhhhhhhhhhhheeeeecc
Q 002267 636 RGPPSQQLVTIFWFSFSTMFFSH--RENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQ 697 (945)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~l~~~~--~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~ 697 (945)
.+....++..++||++.++..-| .-.|.+..+|++.+++.++++++.+..++.+++.++.+.
T Consensus 76 ~~~~~~s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~~~ 139 (301)
T 1xl4_A 76 ENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTRPT 139 (301)
T ss_dssp TTSCTTCHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCcCCHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34445679999999999998665 447999999999999999999999999999999887653
No 191
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=89.92 E-value=0.49 Score=43.53 Aligned_cols=54 Identities=15% Similarity=0.302 Sum_probs=47.6
Q ss_pred chhhHHHHHHHHhhccc--cCcccccchhhHHHHHHHHHHhhhhhhhhhhheeeee
Q 002267 642 QLVTIFWFSFSTMFFSH--RENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTV 695 (945)
Q Consensus 642 ~~~~~~~~~~~~l~~~~--~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 695 (945)
++.+++|+++.++...| .-.|.+..+|++.++|.++++.+.....+++++.+..
T Consensus 52 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~ 107 (148)
T 3vou_A 52 RPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQL 107 (148)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_pred CHHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999998776 4489999999999999999999999999999876644
No 192
>2zzv_A ABC transporter, solute-binding protein; periplasmic substrate binding protein, calcium, lactate, trap transporter, transport protein; 1.40A {Thermus thermophilus} PDB: 2zzw_A 2zzx_A
Probab=89.87 E-value=1.3 Score=47.62 Aligned_cols=59 Identities=20% Similarity=0.131 Sum_probs=43.8
Q ss_pred CCCCChHHhhcCCCCeEEeeCchHHHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceeEEecchhhH
Q 002267 700 SQIEGIDSLISSTEPIGVQDGSFAWNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYI 770 (945)
Q Consensus 700 ~~i~~~~dL~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~ 770 (945)
.+|++++||. |++|.+. +......+ +.++.. .+++ ...|...+|++ |.+|+.....+..
T Consensus 164 ~pI~s~~DLk--G~kirv~-~~~~~~~~-~~lGa~---pv~~-~~~e~~~ALq~----G~VDg~~~~~~~~ 222 (361)
T 2zzv_A 164 KPIRRFEDFK--GVKLRVP-GGMIAEVF-AAAGAS---TVLL-PGGEVYPALER----GVIDAADFVGPAV 222 (361)
T ss_dssp SCCCSGGGGT--TCEEECC-SHHHHHHH-HHTTCE---EECC-CGGGHHHHHHT----TSCSEEECSCHHH
T ss_pred CCcCChHHhC--CCEEeec-CHHHHHHH-HHcCCe---eeec-ChHHHHHHHHc----CCcceeecCCcch
Confidence 5899999997 9999887 55445555 345543 3333 66789999999 8999998776665
No 193
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A
Probab=89.85 E-value=2.2 Score=41.79 Aligned_cols=84 Identities=12% Similarity=0.127 Sum_probs=58.7
Q ss_pred CCceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHHHHHHHHHcCcccEEEec
Q 002267 484 GMPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGD 563 (945)
Q Consensus 484 g~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~ 563 (945)
.++||||+... ....+-..++..+.++.+ .+++++.. ++..+++++|.+|++|++++.
T Consensus 7 ~g~l~Ig~~~~--------------~~~~~lp~~l~~f~~~~P-~v~l~l~~-------~~~~~l~~~L~~g~iDl~i~~ 64 (218)
T 2y7p_A 7 TRTFNLAMTDI--------------GEMYFMPPLMEALAQRAP-HIQISTLR-------PNAGNLKEDMESGAVDLALGL 64 (218)
T ss_dssp CCEEEEECCHH--------------HHHHHHHHHHHHHHHHCT-TCEEEEEC-------CCTTTHHHHHHHTSSCEEEEC
T ss_pred ceEEEEEecHH--------------HHHHHHHHHHHHHHHHCC-CCEEEEEe-------CCcccHHHHHhCCCceEEEec
Confidence 36799998311 112466778899988876 46677764 567889999999999999863
Q ss_pred EEEecCcceeEEecccccccceEEEEEccC
Q 002267 564 ITIVTNRTKLVDFTQPYMESGLVVVAPVQK 593 (945)
Q Consensus 564 ~~~t~~r~~~~dfs~p~~~~~~~~vv~~~~ 593 (945)
. ......+.+ .|+....++++++...
T Consensus 65 ~---~~~~~~l~~-~~l~~~~~~~v~~~~h 90 (218)
T 2y7p_A 65 L---PELQTGFFQ-RRLFRHRYVCMFRKDH 90 (218)
T ss_dssp C---TTCCTTEEE-EEEEEECEEEEEETTC
T ss_pred C---CCCCcceeE-EEeeeccEEEEEcCCC
Confidence 2 111223443 6888899999998776
No 194
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=89.64 E-value=0.31 Score=52.16 Aligned_cols=121 Identities=11% Similarity=0.094 Sum_probs=69.8
Q ss_pred chhhHHHHHHHHhhccc--cCcccccchhhHHHHHHHHHHhhhhhhhhhhheeeeeccccCCCCChHHhhcCCCCeEEe-
Q 002267 642 QLVTIFWFSFSTMFFSH--RENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSLISSTEPIGVQ- 718 (945)
Q Consensus 642 ~~~~~~~~~~~~l~~~~--~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~~~~dL~~~~~~v~~~- 718 (945)
++.+++||++.++...| .-.|.+..+|++.++|.++++++.+...+.+++.++.......... ....+ ..++.+.
T Consensus 45 ~~~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~viI~G 122 (336)
T 1lnq_A 45 SWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINREQMKLMGL-IDVAK-SRHVVICG 122 (336)
T ss_dssp CSSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC-------------------CEEEEES
T ss_pred CHHHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhcc-cCCEEEEC
Confidence 67889999999998766 4479999999999999999999999999999999988655432221 11111 2233333
Q ss_pred eCchHHHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceeEEecchhhHH
Q 002267 719 DGSFAWNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIE 771 (945)
Q Consensus 719 ~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~ 771 (945)
.|....... +.+..... ++-.+..++..+ +.. .+..++.++..-.+
T Consensus 123 ~G~~g~~l~-~~L~~~g~-v~vid~~~~~~~-~~~----~~~~~i~gd~~~~~ 168 (336)
T 1lnq_A 123 WSESTLECL-RELRGSEV-FVLAEDENVRKK-VLR----SGANFVHGDPTRVS 168 (336)
T ss_dssp CCHHHHHHH-TTGGGSCE-EEEESCGGGHHH-HHH----TTCEEEESCTTSHH
T ss_pred CcHHHHHHH-HHHHhCCc-EEEEeCChhhhh-HHh----CCcEEEEeCCCCHH
Confidence 333333333 33322223 444555555555 554 45566666544333
No 195
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=89.53 E-value=4.4 Score=42.52 Aligned_cols=84 Identities=13% Similarity=0.062 Sum_probs=56.0
Q ss_pred CceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHHHHHHHHHcCcccEEEecE
Q 002267 485 MPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDI 564 (945)
Q Consensus 485 ~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~~ 564 (945)
++||||++.. + ...+...++..+.++.+ .+++++.. ++..+++++|.+|++|+++...
T Consensus 93 g~l~I~~~~~--~------------~~~~l~~~l~~f~~~~P-~v~i~l~~-------~~~~~~~~~l~~g~~Dlai~~~ 150 (324)
T 1al3_A 93 GSLYVATTHT--Q------------ARYALPGVIKGFIERYP-RVSLHMHQ-------GSPTQIAEAVSKGNADFAIATE 150 (324)
T ss_dssp EEEEEEECHH--H------------HHHTSHHHHHHHHHHCT-EEEEEEEE-------CCHHHHHHHHHTTCCSEEEESS
T ss_pred CeEEEEechh--h------------hhhHHHHHHHHHHHHCC-CCEEEEEE-------CCHHHHHHHHHCCCceEEEEec
Confidence 5699998321 1 12356678888888876 35566665 5678999999999999998642
Q ss_pred EEecCcceeEEecccccccceEEEEEccC
Q 002267 565 TIVTNRTKLVDFTQPYMESGLVVVAPVQK 593 (945)
Q Consensus 565 ~~t~~r~~~~dfs~p~~~~~~~~vv~~~~ 593 (945)
... ....+. +.|+....++++++...
T Consensus 151 ~~~--~~~~l~-~~~L~~~~~~~v~~~~~ 176 (324)
T 1al3_A 151 ALH--LYDDLV-MLPCYHWNRSIVVTPEH 176 (324)
T ss_dssp CCC--TTSCEE-EEEEEEECEEEEECTTS
T ss_pred CCC--CCCCee-EEEecCCceEEEEcCCC
Confidence 211 112222 35677778888887665
No 196
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=89.42 E-value=0.44 Score=47.46 Aligned_cols=73 Identities=10% Similarity=0.209 Sum_probs=57.2
Q ss_pred HHHhhhheeecccCCCCCCCCccchhhHHHHHHHHhhccc--cCcccccchhhHHHHHHHHHHhhhhhhhhhhheeeee
Q 002267 619 FVGAVVWILEHRFNNEFRGPPSQQLVTIFWFSFSTMFFSH--RENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTV 695 (945)
Q Consensus 619 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 695 (945)
+.+.+++.+|+.. .++...++.+++|+++.++..-| .-.|.+..+|++.+++.++++.+.+...+.+++.++.
T Consensus 146 ~~~~~~~~~e~~~----~~~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~~i~~i~~~~~~ 220 (223)
T 1orq_C 146 YGAFAIYIVEYPD----PNSSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTLLIGTVSNMFQK 220 (223)
T ss_dssp HHHHHHHHTTSSS----TTCSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC----cCCCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566666532 23345689999999999998665 4479999999999999999999999999999887654
No 197
>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}
Probab=89.37 E-value=2.1 Score=42.32 Aligned_cols=86 Identities=9% Similarity=-0.062 Sum_probs=59.1
Q ss_pred HHHHHHHHHHcCCeEEEEEEEeCCcccchHHHHHHHHhhcCcEEEEeecCCCC-------CChHHHHHHHHhhccC--Cc
Q 002267 171 MHAVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPG-------ASRSAINSLLVGANLM--ES 241 (945)
Q Consensus 171 ~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~-------~~~~d~~~~l~~l~~~--~~ 241 (945)
..++++.++..|-++|+++. .|+....+.+++.+++.|+++......... .+...+...++++... ++
T Consensus 96 ~~a~~~a~~~~g~~rvgvlt---~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ga 172 (223)
T 2dgd_A 96 EESVYELLKKLNVRKLWIGT---PYIKERTLEEVEWWRNKGFEIVGYDGLGKIRGIDISNTPIFTIYRLVKRHLNEVLKA 172 (223)
T ss_dssp HHHHHHHHHHTTCCEEEEEE---SSCHHHHHHHHHHHHTTTCEEEEEEECCCCSHHHHHTCCHHHHHHHHHTTHHHHTTS
T ss_pred HHHHHHHHHHcCCCeEEEEe---CCchHHHHHHHHHHHhCCcEEecccCCCCCCcchhhccCHHHHHHHHHHHhcccCCC
Confidence 45666667778889999995 566666678888999999998665443321 2345567777777666 89
Q ss_pred eEEEEEcChhhHHHHHHH
Q 002267 242 RVFVVHVNPDTGLTIFSV 259 (945)
Q Consensus 242 ~vivl~~~~~~~~~~~~~ 259 (945)
|+||+.|..-....+..+
T Consensus 173 daIvLgCT~l~~~~~~~~ 190 (223)
T 2dgd_A 173 DAVYIACTALSTYEAVQY 190 (223)
T ss_dssp SEEEECCTTSCCTTHHHH
T ss_pred CEEEEeCCcccHHHHHHH
Confidence 999998766544333333
No 198
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=88.43 E-value=3.5 Score=42.75 Aligned_cols=85 Identities=16% Similarity=0.114 Sum_probs=56.9
Q ss_pred CceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHHHHHHHHHcCcccEEEecE
Q 002267 485 MPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDI 564 (945)
Q Consensus 485 ~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~~ 564 (945)
++||||++.. + ...+...++..+.++.+ .+++++.. +..++++..|.+|++|+++...
T Consensus 92 g~l~I~~~~~--~------------~~~~l~~~l~~f~~~~P-~i~i~l~~-------~~~~~~~~~l~~g~~Dlai~~~ 149 (305)
T 3fxq_A 92 GHITFAASPA--I------------ALAALPLALASFAREFP-DVTVNVRD-------GMYPAVSPQLRDGTLDFALTAA 149 (305)
T ss_dssp TEEEEEECHH--H------------HHTHHHHHHHHHHHHCT-TCEEEEEE-------CCTTTTHHHHHHTSSSEEEEEC
T ss_pred ceEEEEechH--H------------HHHHHHHHHHHHHHHCC-CCEEEEEE-------CCHHHHHHHHHcCCCCEEEecC
Confidence 5799998321 1 12356778888888876 35677765 5567889999999999998632
Q ss_pred EEecCcceeEEecccccccceEEEEEccC
Q 002267 565 TIVTNRTKLVDFTQPYMESGLVVVAPVQK 593 (945)
Q Consensus 565 ~~t~~r~~~~dfs~p~~~~~~~~vv~~~~ 593 (945)
.... ....+. ..|+....++++++...
T Consensus 150 ~~~~-~~~~l~-~~~L~~~~~~~v~~~~h 176 (305)
T 3fxq_A 150 HKHD-IDTDLE-AQPLYVSDVVIVGQRQH 176 (305)
T ss_dssp CGGG-SCTTEE-EEEEEECCEEEEEETTC
T ss_pred CCCC-CccCee-EEEeecCcEEEEEcCCC
Confidence 2111 011222 46778888999998765
No 199
>4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A*
Probab=87.25 E-value=1.5 Score=46.70 Aligned_cols=66 Identities=12% Similarity=0.092 Sum_probs=41.6
Q ss_pred CCCCChHHhhcCCCCeEEeeCchHHHHHH---HhhccccccceecCCHHHHHHHHhcCCCCCceeEEecchhhHHH
Q 002267 700 SQIEGIDSLISSTEPIGVQDGSFAWNYLV---DELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIEL 772 (945)
Q Consensus 700 ~~i~~~~dL~~~~~~v~~~~~s~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~ 772 (945)
..+++++||. |++||+. ++....++. ...++....+.......+...++.. |.+|+.+.-.++...
T Consensus 101 ~~~~~~~dLk--GK~ig~~-~~~~~~~l~~~L~~~Gl~~~dv~~v~~~~~~~~al~~----G~vDa~~~~~p~~~~ 169 (342)
T 4esw_A 101 GITSDFQSLK--GKRIGYV-GEFGKIQVDELTKHYGMTPDDYVAVRCGMNVAKYILE----GTIDCGIGIECIQQV 169 (342)
T ss_dssp SCCSSGGGGT--TCEEEES-SSHHHHHHHHHHGGGTCCGGGSEEEECGGGHHHHHHH----TSSSEEEEETTTHHH
T ss_pred cccCCHHHhC--CCEEEec-CCchHHHHHHHHHHcCCChhheEEecCCHHHHHHHHc----CCCCEEEEeccchHH
Confidence 4567899997 9999985 443332222 3445554444444334456678888 899998876665443
No 200
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
Probab=87.09 E-value=3.2 Score=43.26 Aligned_cols=57 Identities=9% Similarity=0.092 Sum_probs=41.0
Q ss_pred CCCCChHHhhcCCCCeEEeeCchHHHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceeEEecchh
Q 002267 700 SQIEGIDSLISSTEPIGVQDGSFAWNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELP 768 (945)
Q Consensus 700 ~~i~~~~dL~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~ 768 (945)
.+|++++||. |++|.+. ++.....++ .++.. .++. ...|...+|++ |.+|+......
T Consensus 129 ~pI~s~~Dlk--G~KiR~~-~~~~~~~~~-~lGa~---pv~~-~~~E~y~ALq~----G~vDg~~~~~~ 185 (301)
T 2pfy_A 129 KPVAALADLK--GTRFRAY-SASTSHMAA-LMGAV---PTTV-QTPEVPQAFST----GVIDAMLTSPA 185 (301)
T ss_dssp SCCSSGGGGT--TCEEEEC-SHHHHHHHH-HTTSE---EEEC-CGGGHHHHHHT----TSCSBEEECHH
T ss_pred CCCCCHHHhC--CCEEeec-ChhHHHHHH-HcCCc---ceec-cHHHHHHHHhc----ceeeeEecCcc
Confidence 5899999997 9999886 655445553 45533 3333 67889999999 89999855443
No 201
>3r26_A Molybdate-binding periplasmic protein; protein binding; 1.70A {Escherichia coli} SCOP: c.94.1.1 PDB: 3axf_A 1amf_A 1wod_A
Probab=86.86 E-value=3.4 Score=41.25 Aligned_cols=70 Identities=19% Similarity=0.169 Sum_probs=45.4
Q ss_pred HHHHHHHHHhCCCCccEEEEEcCCCCCCCCHHHHHHHHHcCc-ccEEEecEEEecCc---ceeEE--ecccccccceEEE
Q 002267 515 IDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNK-FDAAVGDITIVTNR---TKLVD--FTQPYMESGLVVV 588 (945)
Q Consensus 515 ~dll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~-~D~~~~~~~~t~~r---~~~~d--fs~p~~~~~~~~v 588 (945)
-++++.+.++-|.++++.+ ++-..++.+|.+|. +|+.++.-.-..++ ...+. ...+|....++++
T Consensus 22 ~~l~~~Fe~~~gi~V~~~~---------~~s~~l~~~i~~g~~~Dv~~~a~~~~~~~l~~~g~~~~~~~~~~~~~~lvl~ 92 (237)
T 3r26_A 22 QDIATQFKKEKGVDVVSSF---------ASSSTLARQIEAGAPADLFISADQKWMDYAVDKKAIDTATRQTLLGNSLVVV 92 (237)
T ss_dssp HHHHHHHHHHHCCEEEEEE---------ECHHHHHHHHHHTCCCSEEECSSHHHHHHHHHTTCBCGGGCEEEEEECEEEE
T ss_pred HHHHHHHHhccCCeEEEEE---------CCHHHHHHHHHcCCCceEEEECCHHHHHHHHHCCCCCCCceeeeEcceEEEE
Confidence 4677888887887765544 44677899998887 99988732111111 11221 2357888889999
Q ss_pred EEccC
Q 002267 589 APVQK 593 (945)
Q Consensus 589 v~~~~ 593 (945)
+++..
T Consensus 93 ~~~~~ 97 (237)
T 3r26_A 93 APKAS 97 (237)
T ss_dssp EESSC
T ss_pred EeCCC
Confidence 98865
No 202
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
Probab=86.59 E-value=3.1 Score=43.34 Aligned_cols=58 Identities=10% Similarity=0.051 Sum_probs=41.7
Q ss_pred CCCCChHHhhcCCCCeEEeeCchHHHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceeEEecchhh
Q 002267 700 SQIEGIDSLISSTEPIGVQDGSFAWNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPY 769 (945)
Q Consensus 700 ~~i~~~~dL~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~ 769 (945)
.+|++++||. |++|.+. |+.....++ .++.. .++. ...|...+|++ |.+|+.......
T Consensus 128 ~pI~s~~Dlk--G~KiR~~-~~~~~~~~~-~lGa~---pv~~-~~~E~y~ALq~----G~vDg~~~~~~~ 185 (301)
T 2pfz_A 128 RDIKQVSDMK--GLKWRAY-SPVTAKIAE-LVGAQ---PVTV-QQAELAQAMAT----GVIDSYMSSGST 185 (301)
T ss_dssp SCCSSGGGGT--TCEEEES-SHHHHHHHH-HHTCE---EEEC-CGGGHHHHHHT----TSCSEEEECHHH
T ss_pred CCCCChHHhc--CCEEecC-ChhHHHHHH-HcCCc---ceec-CHHHHHHHHhc----CeeeEEecCccc
Confidence 5899999997 9999886 555445553 45533 3333 67889999999 899998654433
No 203
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=85.11 E-value=0.55 Score=50.58 Aligned_cols=75 Identities=15% Similarity=0.189 Sum_probs=58.2
Q ss_pred HHHHHhhhheeecccCCCCCCCCccchhhHHHHHHHHhhccc--cCcccccchhhHHHHHHHHHHhhhhhhhhhhheeee
Q 002267 617 FLFVGAVVWILEHRFNNEFRGPPSQQLVTIFWFSFSTMFFSH--RENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILT 694 (945)
Q Consensus 617 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt 694 (945)
+++.+++.+.+++..+.+ ...++.+++|+++.++...| .-.|.+..+|++.+++.++++++.+...+.+++.+.
T Consensus 140 ~~~~a~~~~~~e~~~~~~----~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~ 215 (355)
T 3beh_A 140 LFAVALAAYVIERDIQPE----KFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFY 215 (355)
T ss_dssp HHHHHHHHHHHHTTTCHH----HHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCc----ccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455667777643221 23468899999999998665 448999999999999999999999999999988775
Q ss_pred e
Q 002267 695 V 695 (945)
Q Consensus 695 ~ 695 (945)
.
T Consensus 216 ~ 216 (355)
T 3beh_A 216 Q 216 (355)
T ss_dssp H
T ss_pred H
Confidence 4
No 204
>2hzl_A Trap-T family sorbitol/mannitol transporter, periplasmic binding protein, SMOM; trap transporter, periplasmic subunit, ligand binding; 1.40A {Rhodobacter sphaeroides 2} PDB: 2hzk_A
Probab=85.07 E-value=2.3 Score=45.80 Aligned_cols=87 Identities=17% Similarity=0.129 Sum_probs=52.2
Q ss_pred CCCCChHHhhcCCCCeEEeeCchHHHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceeEEecchhhHHH--HhccC
Q 002267 700 SQIEGIDSLISSTEPIGVQDGSFAWNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIEL--FMSKT 777 (945)
Q Consensus 700 ~~i~~~~dL~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~--~~~~~ 777 (945)
.+|++++||. |++|.+. + .....++ .++.. .++. ...|...+|++ |.+|+.....++..+ -+..
T Consensus 163 ~pI~s~~DLk--G~KiR~~-~-~~~~~~~-~lGa~---pv~~-~~~e~y~ALq~----G~VDg~~~~~p~~~~~~~~~e- 228 (365)
T 2hzl_A 163 REINTVADMQ--GLKMRVG-G-FAGKVME-RLGVV---PQQI-AGGDIYPALEK----GTIDATEWVGPYDDEKLGFFK- 228 (365)
T ss_dssp SCCCSTGGGT--TCEEECC-T-THHHHHH-TTTCE---EECC-CTTSHHHHHHH----TSCSEECCSCHHHHHHHTGGG-
T ss_pred CCCCChHHhC--CCEEecC-C-cHHHHHH-HcCCc---ceec-CHHHHHHHHhC----CCcceeeccCccchhhcChHH-
Confidence 5899999997 9999887 5 3444553 45543 2222 45688899999 899998765555432 1112
Q ss_pred CccEEEeCc-cccccceEEEecCC
Q 002267 778 NCEFRTVGQ-EFTKSGWGFAFQRD 800 (945)
Q Consensus 778 ~~~~~~~~~-~~~~~~~~~~~~k~ 800 (945)
-.++..... ........+++.++
T Consensus 229 v~k~~~~~~~~~~~~~~~~v~n~~ 252 (365)
T 2hzl_A 229 VAPYYYYPGWWEGGPTVHFMFNKS 252 (365)
T ss_dssp TCCEEEECBTTCSSCEEEEEEEHH
T ss_pred hhheeeccCccccccceEEEEcHH
Confidence 234444333 12223446667664
No 205
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A
Probab=85.03 E-value=3.8 Score=41.42 Aligned_cols=70 Identities=19% Similarity=0.156 Sum_probs=45.0
Q ss_pred HHHHHHHHHhCCCCccEEEEEcCCCCCCCCHHHHHHHHHcCc-ccEEEecEEEecC---cceeEE--ecccccccceEEE
Q 002267 515 IDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNK-FDAAVGDITIVTN---RTKLVD--FTQPYMESGLVVV 588 (945)
Q Consensus 515 ~dll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~-~D~~~~~~~~t~~---r~~~~d--fs~p~~~~~~~~v 588 (945)
-+|.+.+.++.|.++++.+ ++-..++.+|.+|. +|+.++.-.-..+ ....++ -..+|....++++
T Consensus 38 ~~l~~~Fe~~~gi~V~~~~---------~~Sg~l~~qi~~g~~~DV~~sa~~~~~~~l~~~gl~~~~~~~~~a~~~lvl~ 108 (253)
T 3gzg_A 38 DEAATAYEKATGTPVRVSY---------AASSALARQIEQGAPADVFLSADLEWMDYLQQHGLVLPAQRHNLLGNTLVLV 108 (253)
T ss_dssp HHHHHHHHHHHSCCEEEEE---------ECHHHHHHHHHTTCCCSEEECSSHHHHHHHHHTTSSCGGGEEEEEEECEEEE
T ss_pred HHHHHHHHHHhCCeEEEEE---------CChHHHHHHHHcCCCceEEEECCHHHHHHHHHCCCcCCCcceeEEeeEEEEE
Confidence 4678888877787766554 44678899999887 8998873211111 111121 1246777788999
Q ss_pred EEccC
Q 002267 589 APVQK 593 (945)
Q Consensus 589 v~~~~ 593 (945)
+++..
T Consensus 109 ~~~~~ 113 (253)
T 3gzg_A 109 APASS 113 (253)
T ss_dssp EETTC
T ss_pred EECCC
Confidence 98776
No 206
>3s99_A Basic membrane lipoprotein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, adenine; HET: ADE; 2.05A {Brucella melitensis biovar abortus}
Probab=84.83 E-value=6.7 Score=41.81 Aligned_cols=90 Identities=10% Similarity=-0.016 Sum_probs=68.8
Q ss_pred EEEEEEeccCCccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChhHHHH
Q 002267 51 VRIGALFTYDSVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAIGPQSSGIAHV 130 (945)
Q Consensus 51 i~IG~l~~l~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~~~~ 130 (945)
=+||.+.....+.-.....|+..+++++| |..++.+.+..+-.|+..+.+.+..|+++++.+|+....+. .
T Consensus 150 ~kIGfVgg~~~p~v~~~~~GF~~G~k~~n------p~i~v~~~~~g~~~d~~kg~~~a~~l~~~G~DvIf~~~d~~---G 220 (356)
T 3s99_A 150 GIAGYIGSVPVPEVVQGINSFMLGAQSVN------PDFRVKVIWVNSWFDPGKEADAAKALIDQGVDIITQHTDST---A 220 (356)
T ss_dssp CEEEEEECCCCHHHHHHHHHHHHHHHTTC------TTCEEEEEECSSSCCHHHHHHHHHHHHHTTCSEEEESSSSS---H
T ss_pred CEEEEECCCccHHHHHHHHHHHHHHHHHC------CCCEEEEEECCCCCChHHHHHHHHHHHhCCCcEEEECCCch---H
Confidence 46899987654333456789999999887 35677777776667999999999999999999998765553 4
Q ss_pred HHHhhcccCccEEecccCC
Q 002267 131 ISHVVNELNVPLLSFGATD 149 (945)
Q Consensus 131 va~~~~~~~iP~Is~~a~~ 149 (945)
+...+.+.++..|.+....
T Consensus 221 v~~aa~e~Gv~vIG~D~dq 239 (356)
T 3s99_A 221 AIQVAHDRGIKAFGQASDM 239 (356)
T ss_dssp HHHHHHHTTCEEEEEESCC
T ss_pred HHHHHHHcCCEEEEEcCch
Confidence 5677778899888875543
No 207
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=84.78 E-value=4.1 Score=44.21 Aligned_cols=88 Identities=9% Similarity=0.058 Sum_probs=65.5
Q ss_pred HHHHHHHHcCCeEEEEEEEeCCccc--chHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcC-
Q 002267 173 AVADLVEYYGWREVIAIFVDDDYGR--NGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN- 249 (945)
Q Consensus 173 ai~~~l~~~~w~~v~ii~~d~~~g~--~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~- 249 (945)
.+.++++.+|.+++.+|++...+.. +..+.+.+.|++.|+++.....+.+.++.+.+...++.+++.++|+||-.+.
T Consensus 23 ~l~~~l~~~g~~~~livtd~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGG 102 (387)
T 3bfj_A 23 VVGERCQLLGGKKALLVTDKGLRAIKDGAVDKTLHYLREAGIEVAIFDGVEPNPKDTNVRDGLAVFRREQCDIIVTVGGG 102 (387)
T ss_dssp GHHHHHHHTTCSEEEEECCTTTC--CCSSHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCCEEEEEESH
T ss_pred HHHHHHHHcCCCEEEEEECcchhhccchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 3566777788899988886665555 5789999999999988754444555567888899999999999999997654
Q ss_pred -hhhHHHHHHHH
Q 002267 250 -PDTGLTIFSVA 260 (945)
Q Consensus 250 -~~~~~~~~~~a 260 (945)
.-++.+++...
T Consensus 103 sv~D~aK~iA~~ 114 (387)
T 3bfj_A 103 SPHDCGKGIGIA 114 (387)
T ss_dssp HHHHHHHHHHHH
T ss_pred chhhHHHHHHHH
Confidence 45677776654
No 208
>1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes, cation-PI interactions, classical hydrogen bonds, protein binding; 1.80A {Archaeoglobus fulgidus} SCOP: c.94.1.1 PDB: 1sw4_A 1sw1_A 1sw2_A 3mam_A*
Probab=84.68 E-value=2.7 Score=43.10 Aligned_cols=106 Identities=8% Similarity=0.012 Sum_probs=56.3
Q ss_pred CCCChHHhhcCCC--CeEEeeCchHHH----HHHHhhccccccceecCCHHHHHHHHhcCCCCCceeEEecchhhHHHHh
Q 002267 701 QIEGIDSLISSTE--PIGVQDGSFAWN----YLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFM 774 (945)
Q Consensus 701 ~i~~~~dL~~~~~--~v~~~~~s~~~~----~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~ 774 (945)
.|+|++||..... .+|...+..... -+.+.+++....+... +..+...++.+ |++|++..-.+....-
T Consensus 124 ~i~si~DL~g~~~~~~~g~~~~~~~~~~g~~~~~~~yGl~~~~~~~~-~~~~~~~Al~~----g~vd~~~~~~p~~~~~- 197 (275)
T 1sw5_A 124 GVEKISDLAEFADQLVFGSDPEFASRPDGLPQIKKVYGFEFKEVKQM-EPTLMYEAIKN----KQVDVIPAYTTDSRVD- 197 (275)
T ss_dssp TCCBGGGGTTTGGGCEEEECHHHHHSTTSHHHHHHHHTCCCSEEEEC-CGGGHHHHHHT----TSCSEEEEETTCHHHH-
T ss_pred CCCcHHHHHhhhcceEeccCcccccccchHHHHHHhcCCCcccccCC-CHHHHHHHHHc----CCCeEEEEeCCCcchh-
Confidence 7999999984311 344332211110 0223456644455555 56678999999 9999998877765542
Q ss_pred ccCCccEEEeCcc---ccccceEEEecCCCcchHHHHHHHHhcc
Q 002267 775 SKTNCEFRTVGQE---FTKSGWGFAFQRDSPLAIDLSTAILQLS 815 (945)
Q Consensus 775 ~~~~~~~~~~~~~---~~~~~~~~~~~k~spl~~~i~~~i~~l~ 815 (945)
+ .+++++..+ +.......+++++..=.+.+-+.+.++.
T Consensus 198 -~--~~l~~L~d~~~~~~~~~~~~v~~~~~~~~P~~~~~l~~l~ 238 (275)
T 1sw5_A 198 -L--FNLKILEDDKGALPPYDAIIIVNGNTAKDEKLISVLKLLE 238 (275)
T ss_dssp -H--TTEEECBCTTCCSCCCEEEEEECTTGGGCHHHHHHHHTTT
T ss_pred -c--CCeEEccCCcccCCccceeeeeehhhccChHHHHHHHHHH
Confidence 2 145555432 2223334455554210034445555553
No 209
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=84.53 E-value=1.3 Score=46.35 Aligned_cols=57 Identities=12% Similarity=0.064 Sum_probs=50.4
Q ss_pred chhhHHHHHHHHhhccc--cCcccccchhhHHHHHHHHHHhhhhhhhhhhheeeeeccc
Q 002267 642 QLVTIFWFSFSTMFFSH--RENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQL 698 (945)
Q Consensus 642 ~~~~~~~~~~~~l~~~~--~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~ 698 (945)
++.+++||++.++..-| ...|.+..+|++.+++.++++++.+.-++.+++.++.+..
T Consensus 78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~~~ 136 (321)
T 2qks_A 78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQPKK 136 (321)
T ss_dssp THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78999999999998665 4589999999999999999999999999999998877643
No 210
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=83.95 E-value=7.6 Score=40.39 Aligned_cols=69 Identities=12% Similarity=0.140 Sum_probs=47.0
Q ss_pred eeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHHHHHHHHHcCcccEEEecEEEecCcceeEEecccccccceEEEEEcc
Q 002267 513 YCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDITIVTNRTKLVDFTQPYMESGLVVVAPVQ 592 (945)
Q Consensus 513 ~~~dll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~~~~t~~r~~~~dfs~p~~~~~~~~vv~~~ 592 (945)
+...++..+.+..+ .+++++.. ++..+++.+|.+|++|+++.... .....+. ..|+....++++++..
T Consensus 119 ~l~~~l~~f~~~~P-~v~l~l~~-------~~~~~~~~~l~~g~~Dl~i~~~~---~~~~~l~-~~~l~~~~~~~v~~~~ 186 (315)
T 1uth_A 119 FMPPLMEALAQRAP-HIQISTLR-------PNAGNLKEDMESGAVDLALGLLP---ELQTGFF-QRRLFRHRYVCMFRKD 186 (315)
T ss_dssp HHHHHHHHHHHHCT-TCEEEEEC-------TTSSCHHHHHHHTSCCEEEECCT---TCCTTEE-EEEEEEECEEEEEETT
T ss_pred HHHHHHHHHHHHCC-CcEEEEEe-------CCcccHHHHHHCCCCCEEEecCC---CCCCCce-EEEeeccceEEEEeCC
Confidence 45678888888775 35566664 55678899999999999986321 1112222 4577788888888765
Q ss_pred C
Q 002267 593 K 593 (945)
Q Consensus 593 ~ 593 (945)
.
T Consensus 187 h 187 (315)
T 1uth_A 187 H 187 (315)
T ss_dssp C
T ss_pred C
Confidence 5
No 211
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=83.72 E-value=13 Score=38.91 Aligned_cols=125 Identities=9% Similarity=0.051 Sum_probs=78.1
Q ss_pred EEEEEeccCCccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChhHHHHH
Q 002267 52 RIGALFTYDSVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAIGPQSSGIAHVI 131 (945)
Q Consensus 52 ~IG~l~~l~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~~~~v 131 (945)
+||.+.............|++.++++.|- ..++.+.+..+-.++..+.+.+.+++++++.+|+... ...+..+
T Consensus 131 ~Ig~i~g~~~~~~~~r~~Gf~~~~~~~~~------~~~~~~~~~~~~~~~~~g~~~a~~ll~~~~daI~~~~-d~~a~Gv 203 (318)
T 2fqx_A 131 AVGFIVGMELGMMPLFEAGFEAGVKAVDP------DIQVVVEVANTFSDPQKGQALAAKLYDSGVNVIFQVA-GGTGNGV 203 (318)
T ss_dssp EEEEEESCCSTTTHHHHHHHHHHHHHHCT------TCEEEEEECSCSSCHHHHHHHHHHHHHTTCCEEEEEC-GGGHHHH
T ss_pred EEEEEeCcccHHHHHHHHHHHHHHHHHCC------CCEEEEEEccCccCHHHHHHHHHHHHHCCCcEEEECC-CCCchHH
Confidence 68888765433345668899999999863 3555555444445788899999999998898988744 3445555
Q ss_pred HHhhcc-----cCccEEecccCCCCCCCC---CCCceEEecCChhHHHHHHHHHHHHcCC
Q 002267 132 SHVVNE-----LNVPLLSFGATDPTLTSL---QYPYFLRTTQSDYYQMHAVADLVEYYGW 183 (945)
Q Consensus 132 a~~~~~-----~~iP~Is~~a~~~~ls~~---~~p~~~r~~p~d~~~~~ai~~~l~~~~w 183 (945)
...+.+ .++-+|.+.........- ..|.+-.+..+-...+...++.+..-.|
T Consensus 204 ~~a~~e~g~~P~dv~viG~D~~~~~~~~~~~~~~~~LTsv~~~~~~~~~~a~~~~~~g~~ 263 (318)
T 2fqx_A 204 IKEARDRRLNGQDVWVIGVDRDQYMDGVYDGSKSVVLTSMVKRADVAAERISKMAYDGSF 263 (318)
T ss_dssp HHHHHHHHHTTCCCEEEEEESCCGGGGBCSSSCBSEEEEEEECHHHHHHHHHHHHHHTCC
T ss_pred HHHHHhhhhccCCcEEEEEecchhhhccccCCCCeEEEEEEEEHHHHHHHHHHHHHcCCC
Confidence 555555 678888876533222100 2344555555555555666665544445
No 212
>2eq5_A 228AA long hypothetical hydantoin racemase; structural genomics, NPPSFA, national project on P structural and functional analyses; 2.20A {Pyrococcus horikoshii}
Probab=83.59 E-value=5.6 Score=39.35 Aligned_cols=113 Identities=17% Similarity=0.162 Sum_probs=63.2
Q ss_pred HHHHHhcCcEEEEccCChhHHHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHcCCeEEE
Q 002267 108 ALQLMENEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVI 187 (945)
Q Consensus 108 a~~li~~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ 187 (945)
+..|.+.++.+|+-+-++. ..+..+-+..++|+++.. ++.++.....+ ++|+
T Consensus 68 ~~~l~~~g~d~iviaCnta--~~~~~l~~~~~iPvi~i~-------------------------~~~~~~a~~~~-~rig 119 (228)
T 2eq5_A 68 AKEFEREGVDAIIISCAAD--PAVEKVRKLLSIPVIGAG-------------------------SSVSALALAYG-RRVG 119 (228)
T ss_dssp HHHHHHTTCSEEEECSTTC--TTHHHHHHHCSSCEEEHH-------------------------HHHHHHHHTTC-SSEE
T ss_pred HHHHHHCCCCEEEEeCCch--HHHHHHHHhCCCCEeCcc-------------------------HHHHHHHHHhC-CeEE
Confidence 3445455888887654444 444555566788888621 11122222356 7899
Q ss_pred EEEEeCCcccchHHHHHHHH-hhcCcEEEEee-----cCCCCCChHHHHHHHHhhccCCceEEEEEcChhh
Q 002267 188 AIFVDDDYGRNGISVLGDAL-SKKRAKISYKA-----PFSPGASRSAINSLLVGANLMESRVFVVHVNPDT 252 (945)
Q Consensus 188 ii~~d~~~g~~~~~~l~~~l-~~~g~~v~~~~-----~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~~~ 252 (945)
++....... ..+.+.+ ++.|.++.... .+........+...+.++...++|+||+.|..-.
T Consensus 120 Vlat~~t~~----~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~~~l~~~~~~l~~~~~d~IvLgCT~~~ 186 (228)
T 2eq5_A 120 VLNLTEETP----KVIRSILGNNLIAEDHPSGVSNTLDLLTDWGRREVINAAKRLKEKGVEVIALGCTGMS 186 (228)
T ss_dssp EECSSSCCC----HHHHHHHGGGEEEEECCTTCCSGGGGGSHHHHHHHHHHHHHHHHTTCSEEEECCTHHH
T ss_pred EEecCcccH----HHHHHHHHHHhCccccCCceeeHHHhcChHHHHHHHHHHHHHHHcCCCEEEECCCCcc
Confidence 888653322 3466777 77776642210 0000011234556666776668999999887654
No 213
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=83.23 E-value=0.93 Score=51.26 Aligned_cols=73 Identities=12% Similarity=0.157 Sum_probs=55.5
Q ss_pred HHHhhhheeecccCCCCCCCCccchhhHHHHHHHHhhccc--cCcccccchhhHHHHHHHHHHhhhhhhhhhhheeeee
Q 002267 619 FVGAVVWILEHRFNNEFRGPPSQQLVTIFWFSFSTMFFSH--RENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTV 695 (945)
Q Consensus 619 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 695 (945)
+.+.+++.+++.. ......++..++|+++.++...+ .-.|.+..+|++.++++++++++.+.+.|.+.+.+..
T Consensus 356 if~~~~~~~e~~~----~~~~F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~ 430 (514)
T 2r9r_B 356 LFSSAVYFAEADE----RDSQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNY 430 (514)
T ss_dssp HHHHHHHHHHTTC----TTCSCSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHhhhheeeccC----CCccccchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455554321 23345679999999999998665 4478889999999999999999999999999876554
No 214
>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1
Probab=83.18 E-value=17 Score=36.11 Aligned_cols=36 Identities=8% Similarity=0.032 Sum_probs=27.1
Q ss_pred HHHHHHhCCCCccEEEEEcCCCCCCCCHHHHHHHHHcCcccEEE
Q 002267 518 FEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAV 561 (945)
Q Consensus 518 l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~ 561 (945)
++...+.-|++ ++++.| .+|......|..|++|+..
T Consensus 21 ~~~~~~~~Gl~--ve~~~f------~d~~~~n~AL~~G~iD~n~ 56 (241)
T 1xs5_A 21 AKEEVKKQHIE--LRIVEF------TNYVALNEAVMRGDILMNF 56 (241)
T ss_dssp HHHHHHTTTEE--EEEEEC------SCHHHHHHHHHHTSSSEEE
T ss_pred HHHHHHHcCCe--EEEEEc------CChHHHHHHHHcCCCCEec
Confidence 34455566866 666666 5699999999999999964
No 215
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=81.67 E-value=1.7 Score=47.08 Aligned_cols=90 Identities=8% Similarity=-0.017 Sum_probs=67.5
Q ss_pred HHHHHHHHHcCCeEEEEEEEeCCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcCh-
Q 002267 172 HAVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNP- 250 (945)
Q Consensus 172 ~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~- 250 (945)
..+.++++.+|.+++.+|++......+..+.+.+.|++.|+++.....+.+.++.+.+...++.+++.++|+||-.+.+
T Consensus 20 ~~l~~~~~~~g~~~~liVtd~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 99 (383)
T 3ox4_A 20 EKAIKDLNGSGFKNALIVSDAFMNKSGVVKQVADLLKAQGINSAVYDGVMPNPTVTAVLEGLKILKDNNSDFVISLGGGS 99 (383)
T ss_dssp HHHHHTTTTSCCCEEEEEEEHHHHHTTHHHHHHHHHHTTTCEEEEEEEECSSCBHHHHHHHHHHHHHHTCSEEEEEESHH
T ss_pred HHHHHHHHHcCCCEEEEEECCchhhCchHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEeCCcH
Confidence 4466677888999999998765444446889999999999887544445555678889999999988899999887544
Q ss_pred -hhHHHHHHHHH
Q 002267 251 -DTGLTIFSVAK 261 (945)
Q Consensus 251 -~~~~~~~~~a~ 261 (945)
-++.+++....
T Consensus 100 v~D~aK~ia~~~ 111 (383)
T 3ox4_A 100 PHDCAKAIALVA 111 (383)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 46677766554
No 216
>3hhf_B Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 2.30A {Neisseria meningitidis serogroup B}
Probab=80.02 E-value=2.2 Score=41.18 Aligned_cols=67 Identities=10% Similarity=0.049 Sum_probs=43.1
Q ss_pred eeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHHHHHHHHHcCcccEEEecEEEecCcceeEEecccccccceEEEEEc
Q 002267 512 GYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDITIVTNRTKLVDFTQPYMESGLVVVAPV 591 (945)
Q Consensus 512 G~~~dll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~~~~t~~r~~~~dfs~p~~~~~~~~vv~~ 591 (945)
.+-.+++..+.++.+ .+++++.. . +.+.+|.+|++|+++....... ..+. +.++....+++++++
T Consensus 20 ~~l~~~l~~f~~~~P-~v~l~i~~-------~---~~~~~l~~g~~D~~i~~~~~~~---~~~~-~~~l~~~~~~~v~~~ 84 (213)
T 3hhf_B 20 HLLAPLAAKFNERYP-HIRLSLVS-------S---EGYINLIERKVDIALRAGELDD---SGLR-ARHLFDSRFRVIASP 84 (213)
T ss_dssp HTHHHHHHHHHHHCT-TEEEEEEC-------C---STTHHHHTTSSSEEEECC--CC---SSEE-EEEEEEECEEEEECH
T ss_pred HHHHHHHHHHHHHCC-CcEEEEEe-------C---CcHHHHHhCCccEEEEEecCCC---ccce-EEeeecceEEEEeCH
Confidence 356788899988875 35555552 1 1134588999999987543322 2232 477888889999876
Q ss_pred cC
Q 002267 592 QK 593 (945)
Q Consensus 592 ~~ 593 (945)
..
T Consensus 85 ~~ 86 (213)
T 3hhf_B 85 EY 86 (213)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 217
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=80.02 E-value=40 Score=34.61 Aligned_cols=70 Identities=11% Similarity=0.113 Sum_probs=49.8
Q ss_pred eeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHHHHHHHHHcCcccEEEecEEEecCcceeEEecccccccceEEEEEc
Q 002267 512 GYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDITIVTNRTKLVDFTQPYMESGLVVVAPV 591 (945)
Q Consensus 512 G~~~dll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~~~~t~~r~~~~dfs~p~~~~~~~~vv~~ 591 (945)
.+..+++..+.+..+ .+++++.. ++..+++.+|.+|++|+++....... ..+. +.|+....++++++.
T Consensus 103 ~~l~~~l~~f~~~~P-~v~i~l~~-------~~~~~~~~~l~~g~~Dlai~~~~~~~---~~l~-~~~L~~~~~~~v~~~ 170 (312)
T 2h9b_A 103 GLLPRIIHLYRQAHP-NLRIELYE-------MGTKAQTEALKEGRIDAGFGRLKISD---PAIK-HSLLRNERLMVAVHA 170 (312)
T ss_dssp TTHHHHHHHHHHTCT-TCEEEEEE-------CCHHHHHHHHHTTSCSEEEESSCCCC---TTEE-EEEEEEEEEEEEEET
T ss_pred hhHHHHHHHHHHHCC-CcEEEEEe-------CCHHHHHHHHHcCCCCEEEEeCCCCC---CCce-EEEeecceEEEEEcC
Confidence 356678888888875 35677765 66889999999999999986432211 1222 457778888888887
Q ss_pred cC
Q 002267 592 QK 593 (945)
Q Consensus 592 ~~ 593 (945)
..
T Consensus 171 ~h 172 (312)
T 2h9b_A 171 SH 172 (312)
T ss_dssp TS
T ss_pred CC
Confidence 65
No 218
>1twy_A ABC transporter, periplasmic substrate-binding PR; nysgxrc target, structural genomics, protei structure initiative, PSI; 1.65A {Vibrio cholerae o1 biovar eltor} SCOP: c.94.1.1
Probab=79.99 E-value=27 Score=35.16 Aligned_cols=72 Identities=11% Similarity=-0.053 Sum_probs=47.7
Q ss_pred eeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHHHHHHHHHcCcccEEEecEEEecCcc-eeEEecccccccceEEEEEc
Q 002267 513 YCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDITIVTNRT-KLVDFTQPYMESGLVVVAPV 591 (945)
Q Consensus 513 ~~~dll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~~~~t~~r~-~~~dfs~p~~~~~~~~vv~~ 591 (945)
+-.+++..+.++.+ .+++++.. ++..+++++|.+|++|+++.......... ..+. ..|+....+++++++
T Consensus 41 ~l~~~l~~f~~~~P-~i~v~i~~-------~~~~~~~~~l~~g~~Di~i~~~~~~~~~~~~~~~-~~~l~~~~~~~v~~~ 111 (290)
T 1twy_A 41 IMDVLAEKYNQQHP-ETYVAVQG-------VGSTAGISLLKKGVADIAMTSRYLTESEAQNTLH-TFTLAFDGLAIVVNQ 111 (290)
T ss_dssp HHHHHHHHHHHHCT-TCEEEEEE-------SCHHHHHHHHHTTSCSEEEESSCCCTTTCCTTCE-EEEEEEEEEEEEECT
T ss_pred HHHHHHHHHHhhCC-CceEEEEe-------cCcHHHHHHHhcCCCcEEEecCCCchhhhhcCce-EEEEEeeeEEEEECC
Confidence 34568888888773 24466654 66789999999999999986433222100 1222 367778888888876
Q ss_pred cC
Q 002267 592 QK 593 (945)
Q Consensus 592 ~~ 593 (945)
..
T Consensus 112 ~~ 113 (290)
T 1twy_A 112 AN 113 (290)
T ss_dssp TC
T ss_pred CC
Confidence 65
No 219
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=79.71 E-value=49 Score=34.02 Aligned_cols=70 Identities=13% Similarity=0.118 Sum_probs=49.5
Q ss_pred eeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHHHHHHHHHcCcccEEEecEEEecCcceeEEecccccccceEEEEEc
Q 002267 512 GYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDITIVTNRTKLVDFTQPYMESGLVVVAPV 591 (945)
Q Consensus 512 G~~~dll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~~~~t~~r~~~~dfs~p~~~~~~~~vv~~ 591 (945)
.+..+++..+.+..+ .+++++.. ++..+++.+|.+|++|+++....... ..+. ..|+....++++++.
T Consensus 103 ~~l~~~l~~f~~~~P-~v~l~l~~-------~~~~~~~~~l~~g~~Dlai~~~~~~~---~~l~-~~~L~~~~~~~v~~~ 170 (313)
T 2h98_A 103 GLLPEIIYLFRQQNP-EIHIELIE-------CGTKDQINALKQGKIDLGFGRLKITD---PAIR-RIMLHKEQLKLAIHK 170 (313)
T ss_dssp TTHHHHHHHHHHHCT-TSEEEEEE-------CCHHHHHHHHHHTSCSEEEESSCCCC---TTEE-EEEEEEEEEEEEEET
T ss_pred hHHHHHHHHHHHHCC-CeEEEEEe-------CChHHHHHHHHcCCCCEEEEeCCCCC---CCee-EEEeeeCcEEEEEcC
Confidence 356678888888875 35577665 66789999999999999986432211 1222 457778888888887
Q ss_pred cC
Q 002267 592 QK 593 (945)
Q Consensus 592 ~~ 593 (945)
..
T Consensus 171 ~h 172 (313)
T 2h98_A 171 HH 172 (313)
T ss_dssp TS
T ss_pred CC
Confidence 54
No 220
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=79.02 E-value=20 Score=29.46 Aligned_cols=97 Identities=12% Similarity=0.104 Sum_probs=65.7
Q ss_pred eEEecCChhHHHHHHHHHHHHcCCeEEEEEEEeCCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhcc-
Q 002267 160 FLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANL- 238 (945)
Q Consensus 160 ~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~- 238 (945)
+|-...+|.....-++.-++..|. +|.++|+|.+- .-...-.+.+++.|..+... .+..||+..+..|-.
T Consensus 4 ifvvfssdpeilkeivreikrqgv-rvvllysdqde--krrrerleefekqgvdvrtv------edkedfrenireiwer 74 (162)
T 2l82_A 4 IFVVFSSDPEILKEIVREIKRQGV-RVVLLYSDQDE--KRRRERLEEFEKQGVDVRTV------EDKEDFRENIREIWER 74 (162)
T ss_dssp EEEEEESCHHHHHHHHHHHHHTTC-EEEEEECCSCH--HHHHHHHHHHHTTTCEEEEC------CSHHHHHHHHHHHHHH
T ss_pred EEEEecCCHHHHHHHHHHHHhCCe-EEEEEecCchH--HHHHHHHHHHHHcCCceeee------ccHHHHHHHHHHHHHh
Confidence 345556777777888888888885 57788987542 22223345678899887642 356788877777643
Q ss_pred -CCceEEEEEc--ChhhHHHHHHHHHhCCC
Q 002267 239 -MESRVFVVHV--NPDTGLTIFSVAKSLGM 265 (945)
Q Consensus 239 -~~~~vivl~~--~~~~~~~~~~~a~~~g~ 265 (945)
.+-|++++.. ...-...++.+|++.|.
T Consensus 75 ypqldvvvivttddkewikdfieeakergv 104 (162)
T 2l82_A 75 YPQLDVVVIVTTDDKEWIKDFIEEAKERGV 104 (162)
T ss_dssp CTTCCEEEEEECCCHHHHHHHHHHHHHTTC
T ss_pred CCCCcEEEEEecCcHHHHHHHHHHHHhcCc
Confidence 3556666553 45567889999999886
No 221
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=78.68 E-value=47 Score=31.69 Aligned_cols=160 Identities=18% Similarity=0.169 Sum_probs=98.2
Q ss_pred eEEEEEEeccCCccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChhHHH
Q 002267 50 SVRIGALFTYDSVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAIGPQSSGIAH 129 (945)
Q Consensus 50 ~i~IG~l~~l~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~~~ 129 (945)
..+|.++.|.. ....-++-..++.| ..+.+.. ++-..++..+.++ ++++.+||.-. +++.
T Consensus 4 ~~~I~~iapy~-----~l~~~~~~i~~e~~--------~~i~i~~----~~l~~~v~~a~~~-~~~~dVIISRG--gta~ 63 (196)
T 2q5c_A 4 SLKIALISQNE-----NLLNLFPKLALEKN--------FIPITKT----ASLTRASKIAFGL-QDEVDAIISRG--ATSD 63 (196)
T ss_dssp CCEEEEEESCH-----HHHHHHHHHHHHHT--------CEEEEEE----CCHHHHHHHHHHH-TTTCSEEEEEH--HHHH
T ss_pred CCcEEEEEccH-----HHHHHHHHHHhhhC--------CceEEEE----CCHHHHHHHHHHh-cCCCeEEEECC--hHHH
Confidence 35788888864 22333333344432 2444433 4567888999999 88999999632 3333
Q ss_pred HHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEeCCcccchHHHHHHHHhh
Q 002267 130 VISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSK 209 (945)
Q Consensus 130 ~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~ 209 (945)
.+. +..++|+|.. ..+......++...-+ ++ ++|++|.-.+.. ..++.+.+.+
T Consensus 64 ~lr---~~~~iPVV~I------------------~~s~~Dil~al~~a~~-~~-~kIavvg~~~~~--~~~~~~~~ll-- 116 (196)
T 2q5c_A 64 YIK---KSVSIPSISI------------------KVTRFDTMRAVYNAKR-FG-NELALIAYKHSI--VDKHEIEAML-- 116 (196)
T ss_dssp HHH---TTCSSCEEEE------------------CCCHHHHHHHHHHHGG-GC-SEEEEEEESSCS--SCHHHHHHHH--
T ss_pred HHH---HhCCCCEEEE------------------cCCHhHHHHHHHHHHh-hC-CcEEEEeCcchh--hHHHHHHHHh--
Confidence 222 4467999863 1233445566665544 44 489998755432 2345555555
Q ss_pred cCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcChhhHHHHHHHHHhCCCCC
Q 002267 210 KRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSLGMTA 267 (945)
Q Consensus 210 ~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~~~~~~~~~~a~~~g~~~ 267 (945)
|.++... .+ .+.++....++++++.+.++||-.+. ..+.|++.|+.+
T Consensus 117 -~~~i~~~-~~---~~~~e~~~~i~~l~~~G~~vvVG~~~------~~~~A~~~Gl~~ 163 (196)
T 2q5c_A 117 -GVKIKEF-LF---SSEDEITTLISKVKTENIKIVVSGKT------VTDEAIKQGLYG 163 (196)
T ss_dssp -TCEEEEE-EE---CSGGGHHHHHHHHHHTTCCEEEECHH------HHHHHHHTTCEE
T ss_pred -CCceEEE-Ee---CCHHHHHHHHHHHHHCCCeEEECCHH------HHHHHHHcCCcE
Confidence 4555432 22 36788899999999999999887542 355688889754
No 222
>1jfl_A Aspartate racemase; alpha-beta structure, HOMO-dimer, homologous domains, isomer; 1.90A {Pyrococcus horikoshii} SCOP: c.78.2.1 c.78.2.1 PDB: 2dx7_A* 1iu9_A
Probab=78.65 E-value=8.4 Score=38.07 Aligned_cols=80 Identities=18% Similarity=0.230 Sum_probs=45.8
Q ss_pred HHHHHHHhcCcEEEEccCChhHHHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHcCCeE
Q 002267 106 MEALQLMENEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWRE 185 (945)
Q Consensus 106 ~~a~~li~~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~ 185 (945)
+.+..|.+.++.+|+=+-.+.. ..+..+-+..++|++.. .++.++.+...+-++
T Consensus 65 ~~~~~l~~~g~d~iviaCnTa~-~~~~~l~~~~~iPvi~i-------------------------~~~~~~~a~~~~~~r 118 (228)
T 1jfl_A 65 WTAKRLEECGADFIIMPCNTAH-AFVEDIRKAIKIPIISM-------------------------IEETAKKVKELGFKK 118 (228)
T ss_dssp HHHHHHHHHTCSEEECSCTGGG-GGHHHHHHHCSSCBCCH-------------------------HHHHHHHHHHTTCSE
T ss_pred HHHHHHHHcCCCEEEEcCccHH-HHHHHHHHhCCCCEech-------------------------HHHHHHHHHHcCCCe
Confidence 4455555558998887666554 55556667778888852 122333333336678
Q ss_pred EEEEEEeCCcccchHHHHHHHHhhcCcEE
Q 002267 186 VIAIFVDDDYGRNGISVLGDALSKKRAKI 214 (945)
Q Consensus 186 v~ii~~d~~~g~~~~~~l~~~l~~~g~~v 214 (945)
|+++.+....- ...+++.+++.|+++
T Consensus 119 igvlaT~~T~~---~~~y~~~l~~~g~~v 144 (228)
T 1jfl_A 119 AGLLATTGTIV---SGVYEKEFSKYGVEI 144 (228)
T ss_dssp EEEECCHHHHH---HTHHHHHHHHTTCEE
T ss_pred EEEEecHHHhh---hhHHHHHHHHCCCeE
Confidence 88876442211 123455666667665
No 223
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=78.43 E-value=20 Score=36.87 Aligned_cols=120 Identities=9% Similarity=-0.016 Sum_probs=75.5
Q ss_pred EEEEEeccCCccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEccCChhHHHHH
Q 002267 52 RIGALFTYDSVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAIGPQSSGIAHVI 131 (945)
Q Consensus 52 ~IG~l~~l~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aiiGp~~s~~~~~v 131 (945)
+||.+....... -..|+..++++.|- . ++.+.+..+-.++..+.+.+.+|+++++.+|+.. ....+..+
T Consensus 128 ~Ig~i~g~~~~~---r~~Gf~~~~~~~~~------~-~~~~~~~~~~~~~~~g~~~a~~ll~~~~daI~~~-~D~~a~Gv 196 (296)
T 2hqb_A 128 KVGVIAAFPWQP---EVEGFVDGAKYMNE------S-EAFVRYVGEWTDADKALELFQELQKEQVDVFYPA-GDGYHVPV 196 (296)
T ss_dssp EEEEEESCTTCH---HHHHHHHHHHHTTC------C-EEEEEECSSSSCHHHHHHHHHHHHTTTCCEEECC-CTTTHHHH
T ss_pred eEEEEcCcCchh---hHHHHHHHHHHhCC------C-eEEEEeeccccCHHHHHHHHHHHHHCCCcEEEEC-CCCCCHHH
Confidence 688887654222 67899999988762 3 5544444443478888999999998899999974 44555666
Q ss_pred HHhhcccCccEEecccCCCCCCCC-CCCceEEecCChhHHHHHHHHHHHHcCCeE
Q 002267 132 SHVVNELNVPLLSFGATDPTLTSL-QYPYFLRTTQSDYYQMHAVADLVEYYGWRE 185 (945)
Q Consensus 132 a~~~~~~~iP~Is~~a~~~~ls~~-~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~ 185 (945)
...+.+.++-+|.+.. +. +.. ..|.+-.+..+-...+...++.+..-.|+.
T Consensus 197 ~~a~~e~Gv~viG~D~-~~--~~~~~~~~LTsv~~~~~~~~~~a~~~~~~g~~~~ 248 (296)
T 2hqb_A 197 VEAIKDQGDFAIGYVG-DQ--ADLGGSTILTSTVQHVDDLYVLVAKRFQEGKLES 248 (296)
T ss_dssp HHHHHHHTCEEEEEES-CC--SSSSCSSEEEEEEECHHHHHHHHHHHTTTTCCCC
T ss_pred HHHHHHcCCEEEEEec-ch--hhhCCCeEEEEEEEEhHHHHHHHHHHHHcCCCCC
Confidence 6777778888888765 21 221 124444444444444444555444445643
No 224
>1rrm_A Lactaldehyde reductase; structural genomics, dehydrogenase, PSI, protein structure initiative; HET: APR; 1.60A {Escherichia coli} SCOP: e.22.1.2 PDB: 2bi4_A* 2bl4_A*
Probab=76.79 E-value=3.4 Score=44.80 Aligned_cols=88 Identities=8% Similarity=0.068 Sum_probs=65.5
Q ss_pred HHHHHHHcCCeEEEEEEEeCCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcC--hh
Q 002267 174 VADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN--PD 251 (945)
Q Consensus 174 i~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~--~~ 251 (945)
+.++++.+|.+++.+|++...+..+..+.+.+.|++.|+++.....+.+.++.+.+...++.+++.++|+||-.+. .-
T Consensus 22 l~~~l~~~g~~~~livtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGsv~ 101 (386)
T 1rrm_A 22 LTDEVKRRGYQKALIVTDKTLVQCGVVAKVTDKMDAAGLAWAIYDGVVPNPTITVVKEGLGVFQNSGADYLIAIGGGSPQ 101 (386)
T ss_dssp HHHHHHHHTCCEEEEECBHHHHHTTHHHHHHHHHHHTTCEEEEECBCCSSCBHHHHHHHHHHHHHHTCSEEEEEESHHHH
T ss_pred HHHHHHHcCCCEEEEEECcchhhchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCcCEEEEeCChHHH
Confidence 5566777888999888755444445788899999999988754444555567888899999998889999997654 45
Q ss_pred hHHHHHHHHH
Q 002267 252 TGLTIFSVAK 261 (945)
Q Consensus 252 ~~~~~~~~a~ 261 (945)
++.+++....
T Consensus 102 D~aK~iA~~~ 111 (386)
T 1rrm_A 102 DTCKAIGIIS 111 (386)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6777776654
No 225
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=76.27 E-value=6.2 Score=43.05 Aligned_cols=88 Identities=10% Similarity=0.078 Sum_probs=63.7
Q ss_pred HHHHHHHHcCCeEEEEEEEeCCccc-chHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcC--
Q 002267 173 AVADLVEYYGWREVIAIFVDDDYGR-NGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN-- 249 (945)
Q Consensus 173 ai~~~l~~~~w~~v~ii~~d~~~g~-~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~-- 249 (945)
.+.++++.+|.+++.+|+++..... +..+.+.+.|++.|+++.....+.+.++.+.+...++.+++.++|+||-.+.
T Consensus 33 ~l~~~l~~~g~~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 112 (407)
T 1vlj_A 33 KIGEEIKNAGIRKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVHEAVEVAKKEKVEAVLGVGGGS 112 (407)
T ss_dssp GHHHHHHHTTCCEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCSEEEEEESHH
T ss_pred HHHHHHHHcCCCeEEEEECchHHhhccHHHHHHHHHHHcCCeEEEecCccCCCCHHHHHHHHHHHHhcCCCEEEEeCChh
Confidence 3556777788899988886443333 4678899999999988754434444567788889999999999999997654
Q ss_pred hhhHHHHHHHH
Q 002267 250 PDTGLTIFSVA 260 (945)
Q Consensus 250 ~~~~~~~~~~a 260 (945)
.-++.+++...
T Consensus 113 viD~AK~iA~~ 123 (407)
T 1vlj_A 113 VVDSAKAVAAG 123 (407)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44666666554
No 226
>2zsk_A PH1733, 226AA long hypothetical aspartate racemase; alpha/beta fold, unknown function; 2.55A {Pyrococcus horikoshii}
Probab=75.75 E-value=9.6 Score=37.60 Aligned_cols=77 Identities=19% Similarity=0.194 Sum_probs=46.1
Q ss_pred HHHhcCcEEEEccCChhHHHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHcCCeEEEEE
Q 002267 110 QLMENEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAI 189 (945)
Q Consensus 110 ~li~~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii 189 (945)
.|.+.++.+|+=+-++.... +..+-+..++|++.. .++.++.+...+-++|+++
T Consensus 68 ~L~~~g~d~iviaCnTa~~~-~~~l~~~~~iPvi~i-------------------------~~a~~~~~~~~~~~rigvl 121 (226)
T 2zsk_A 68 ALERAGAELIAFAANTPHLV-FDDVQREVNVPMVSI-------------------------IDAVAEEILKRGVRKVLLL 121 (226)
T ss_dssp HHHHHTCSEEEESSSGGGGG-HHHHHHHCSSCBCCH-------------------------HHHHHHHHHHTTCCEEEEE
T ss_pred HHHHcCCCEEEECCCcHHHH-HHHHHHhCCCCEecc-------------------------HHHHHHHHHHcCCCeEEEE
Confidence 34344888887765555432 455556678888852 2334444444567899999
Q ss_pred EEeCCcccchHHHHHHHHhhcCcEEE
Q 002267 190 FVDDDYGRNGISVLGDALSKKRAKIS 215 (945)
Q Consensus 190 ~~d~~~g~~~~~~l~~~l~~~g~~v~ 215 (945)
.+...... ..+++.+++.|+++.
T Consensus 122 aT~~T~~~---~~y~~~l~~~g~~v~ 144 (226)
T 2zsk_A 122 GTKTTMTA---DFYIKTLEEKGLEVV 144 (226)
T ss_dssp SSTTTTSC---HHHHHHHHTTTCEEE
T ss_pred eCHHHHhh---hHHHHHHHHCCCEEE
Confidence 74322221 345677777888764
No 227
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=75.50 E-value=2.6 Score=42.88 Aligned_cols=68 Identities=9% Similarity=0.109 Sum_probs=51.6
Q ss_pred cchhhHHHHHHHHhhccc--cCcccccc-------hhhHHHHHHHHHHhhhhhhhhhhheeeeeccccCCCCChHHh
Q 002267 641 QQLVTIFWFSFSTMFFSH--RENTVSSL-------GRVVLIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSL 708 (945)
Q Consensus 641 ~~~~~~~~~~~~~l~~~~--~~~p~s~~-------~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~~~~dL 708 (945)
-.+.+++|+++.++...+ .-.|.+.. .|++.++|.++++.+.....+.+++.+...+....+..-+|+
T Consensus 200 ~s~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~~~l~~~~~~~~~~ 276 (280)
T 3ukm_A 200 WNFLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHELKKFRKMFYVKKDK 276 (280)
T ss_dssp CCHHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHTTC-----
T ss_pred CchhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 357899999999998665 33566653 599999999999999999999999998887766655544443
No 228
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=72.07 E-value=9.4 Score=40.97 Aligned_cols=87 Identities=8% Similarity=0.033 Sum_probs=63.3
Q ss_pred HHHHHHHHcCCeEEEEEEEeCCccc-chHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcC--
Q 002267 173 AVADLVEYYGWREVIAIFVDDDYGR-NGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN-- 249 (945)
Q Consensus 173 ai~~~l~~~~w~~v~ii~~d~~~g~-~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~-- 249 (945)
.+.++++.+| +++.+|++...+.. +..+.+.+.|++.|+++.....+.+.++.+.+...++.+++.++|+||-.+.
T Consensus 31 ~l~~~l~~~g-~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGs 109 (371)
T 1o2d_A 31 KRGNIIDLLG-KRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERYRNDSFDFVVGLGGGS 109 (371)
T ss_dssp HHGGGGGGTC-SEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHHTTSCCSEEEEEESHH
T ss_pred HHHHHHHHcC-CEEEEEECchHHhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHhcCCCEEEEeCChH
Confidence 3555677778 89988887645443 3678899999999987654444445567888999999999889999997654
Q ss_pred hhhHHHHHHHH
Q 002267 250 PDTGLTIFSVA 260 (945)
Q Consensus 250 ~~~~~~~~~~a 260 (945)
.-++.+++...
T Consensus 110 v~D~AK~iA~~ 120 (371)
T 1o2d_A 110 PMDFAKAVAVL 120 (371)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44666666554
No 229
>3onm_A Transcriptional regulator LRHA; LYSR, ROVM, transcription factor, virulence factor; 2.40A {Yersinia pseudotuberculosis}
Probab=71.64 E-value=58 Score=31.50 Aligned_cols=81 Identities=11% Similarity=0.032 Sum_probs=57.9
Q ss_pred CceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHHHHHHHHHcCcccEEEecE
Q 002267 485 MPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDI 564 (945)
Q Consensus 485 ~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~~ 564 (945)
+.||||+... .. ..+..+++..+.++.+ .+++++.. ++..+++.+|.+|++|+++...
T Consensus 27 g~l~Ig~~~~--~~------------~~~l~~~l~~f~~~~P-~i~l~i~~-------~~~~~~~~~L~~g~~Dl~i~~~ 84 (238)
T 3onm_A 27 GSLIIGASDD--TA------------DTLLPFLLNRVATLYP-RLAIDVRV-------KRSPFIADMLSSGEVDLAITTA 84 (238)
T ss_dssp CCEEEEECHH--HH------------TTHHHHHHHHHHHHCT-TCCEEEEE-------CCHHHHHHHHHHTSCSEEEECS
T ss_pred eeEEEeccch--hh------------HHHHHHHHHHHHHHCC-CcEEEEEE-------CCHHHHHHHHHCCCccEEEEec
Confidence 6799998322 11 2356778889988875 35677765 6789999999999999998643
Q ss_pred EEecCcceeEEecccccccceEEEEEccC
Q 002267 565 TIVTNRTKLVDFTQPYMESGLVVVAPVQK 593 (945)
Q Consensus 565 ~~t~~r~~~~dfs~p~~~~~~~~vv~~~~ 593 (945)
.. . . --+.++....+++++++..
T Consensus 85 ~~--~---~-~~~~~l~~~~~~~v~~~~~ 107 (238)
T 3onm_A 85 KV--D---S-HPHVILRTSPTLWYCSVDY 107 (238)
T ss_dssp CC------C-CCEEEEEEECEEEEEETTC
T ss_pred CC--C---C-cceEEeecCCEEEEEcCCC
Confidence 21 1 1 2357788888999998766
No 230
>2dwu_A Glutamate racemase; isomerase; HET: DGL; 1.60A {Bacillus anthracis}
Probab=71.13 E-value=23 Score=36.00 Aligned_cols=118 Identities=10% Similarity=0.050 Sum_probs=63.4
Q ss_pred HHHHHHHHhcCcEEEEccCChhHHHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHcCCe
Q 002267 105 TMEALQLMENEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWR 184 (945)
Q Consensus 105 ~~~a~~li~~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~ 184 (945)
.+.+..|.++++.+|+=+-.+..+.++..+-+..++|+|... -.++...++..+-+
T Consensus 59 ~~~~~~L~~~g~d~IViACNTas~~~l~~lr~~~~iPVigii------------------------ep~~~~A~~~~~~~ 114 (276)
T 2dwu_A 59 FEMVEFLKQFPLKALVVACNTAAAATLAALQEALSIPVIGVI------------------------HPGARAAIKVTKKG 114 (276)
T ss_dssp HHHHHHHTTSCEEEEEECCHHHHHHHHHHHHHHCSSCEEESH------------------------HHHHHHHHHHCSSS
T ss_pred HHHHHHHHHCCCCEEEEeCCcHHHHHHHHHHHHCCCCEEecc------------------------HHHHHHHHHhcCCC
Confidence 334444555689999876555555566667777899988520 01111223334567
Q ss_pred EEEEEEEeCCcccchHHHHHHHHhh--cCcEEEEeecCCCC--------C----ChHHHHHHHHhhccCCceEEEEEcCh
Q 002267 185 EVIAIFVDDDYGRNGISVLGDALSK--KRAKISYKAPFSPG--------A----SRSAINSLLVGANLMESRVFVVHVNP 250 (945)
Q Consensus 185 ~v~ii~~d~~~g~~~~~~l~~~l~~--~g~~v~~~~~~~~~--------~----~~~d~~~~l~~l~~~~~~vivl~~~~ 250 (945)
+|+++.+....-.. .+++.+++ .+.+|.... -+.. . ....+...++.++..++|+||+.|..
T Consensus 115 rIgVlaT~~T~~s~---~y~~~i~~~~~~~~v~~~~-~~~~v~~ve~g~~~~~~~~~~l~~~l~~l~~~~~D~IVLGCTh 190 (276)
T 2dwu_A 115 KIGVIGTVGTIQSN---MYEKALHELDTYLKVHSHA-CPTLATVVENRLEDTAYVTQQVKQALLPLTKEDIDTLILGCTH 190 (276)
T ss_dssp EEEEEECHHHHHTT---HHHHHHHHHCTTCEEEEEE-CTTHHHHHHHSTTCHHHHHHHHHHHHHHHHTSCCSEEEECSTT
T ss_pred eEEEEeChhhhhhH---HHHHHHHHhCCCCEEEeee-CHHHHHHHHcCCcCCHHHHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 88888754322222 22333333 245554221 1210 0 11235566666666778888887654
No 231
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=71.05 E-value=4.5 Score=43.69 Aligned_cols=81 Identities=14% Similarity=0.121 Sum_probs=54.0
Q ss_pred HHHHHHHcCCeEEEEEEEeCCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcChh--
Q 002267 174 VADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPD-- 251 (945)
Q Consensus 174 i~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~~-- 251 (945)
+.++++.+| +++.+|++...+.. ..+.+.+.|++ |+++.+ ..+...++.+++...++.+++.++|+||-.+.+.
T Consensus 44 l~~~l~~~g-~r~liVtd~~~~~~-~~~~v~~~L~~-g~~~~~-~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGs~~ 119 (387)
T 3uhj_A 44 LAAYLAPLG-KRALVLIDRVLFDA-LSERIGKSCGD-SLDIRF-ERFGGECCTSEIERVRKVAIEHGSDILVGVGGGKTA 119 (387)
T ss_dssp THHHHGGGC-SEEEEEECTTTHHH-HHHHC-------CCEEEE-EECCSSCSHHHHHHHHHHHHHHTCSEEEEESSHHHH
T ss_pred HHHHHHHcC-CEEEEEECchHHHH-HHHHHHHHHHc-CCCeEE-EEcCCCCCHHHHHHHHHHHhhcCCCEEEEeCCcHHH
Confidence 556778888 99988886555443 67788889999 988744 3455556778888888888888999998876554
Q ss_pred hHHHHHH
Q 002267 252 TGLTIFS 258 (945)
Q Consensus 252 ~~~~~~~ 258 (945)
++.+++.
T Consensus 120 D~AK~iA 126 (387)
T 3uhj_A 120 DTAKIVA 126 (387)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4555554
No 232
>3kos_A HTH-type transcriptional activator AMPR; alpha-beta sandwich, DNA-binding, transcription regulation; HET: MES; 1.83A {Citrobacter freundii} PDB: 3kot_A
Probab=70.80 E-value=24 Score=33.68 Aligned_cols=104 Identities=9% Similarity=-0.009 Sum_probs=55.7
Q ss_pred CCChHHhhcCCCC-eEEeeCchHHHHHHHhhccc---cccceecCCHHHHHHHHhcCCCCCceeEEecchhhHHHHhccC
Q 002267 702 IEGIDSLISSTEP-IGVQDGSFAWNYLVDELKIA---ESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKT 777 (945)
Q Consensus 702 i~~~~dL~~~~~~-v~~~~~s~~~~~l~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~ 777 (945)
.-+++||. +.+ +....+.....++....... .......++.+...+.+.. |...+++.+...... ....
T Consensus 95 ~~~~~~L~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~----g~Gi~~lp~~~~~~~-~~~~ 167 (219)
T 3kos_A 95 IQTPADIL--KFPLLRSYRRDEWALWMQTVGEAPPSPTHNVMVFDSSVTMLEAAQA----GMGVAIAPVRMFTHL-LSSE 167 (219)
T ss_dssp CSSGGGGG--GSCEEEESCTTHHHHHHHHTTCCCCCTTSCEEEESCHHHHHHHHHT----TSCBEEEEGGGCHHH-HHTT
T ss_pred cCCHHHHh--cCceeccCCccCHHHHHHHcCCCCCccccceeEEccHHHHHHHHHc----CCCeEeehHHhhHHH-HHcC
Confidence 34677887 333 44445555555554332111 1233567899999999998 554555554443333 2331
Q ss_pred CccEEEeCccccccceEEEecCCCcchHHHHHHHHh
Q 002267 778 NCEFRTVGQEFTKSGWGFAFQRDSPLAIDLSTAILQ 813 (945)
Q Consensus 778 ~~~~~~~~~~~~~~~~~~~~~k~spl~~~i~~~i~~ 813 (945)
... ....+......++++.+++.+....+...+..
T Consensus 168 ~l~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~f~~~ 202 (219)
T 3kos_A 168 RIV-QPFLTQIDLGSYWITRLQSRPETPAMREFSRW 202 (219)
T ss_dssp SSB-CCCCCCBCSCEEEEEEETTSCCCHHHHHHHHH
T ss_pred Cee-ccccCCccCCcEEEEecccccCCHHHHHHHHH
Confidence 221 12222333446778888877665555554433
No 233
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=70.30 E-value=13 Score=37.70 Aligned_cols=39 Identities=13% Similarity=0.244 Sum_probs=26.9
Q ss_pred HHHHHHHhcCcEEEEccCChhHHHHHHHhhcccCccEEe
Q 002267 106 MEALQLMENEVVAAIGPQSSGIAHVISHVVNELNVPLLS 144 (945)
Q Consensus 106 ~~a~~li~~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is 144 (945)
+.+..|.+.++.+|+-+-.+..+..+..+-+..++|+|.
T Consensus 56 ~~~~~L~~~g~d~iviaCNTas~~~l~~lr~~~~iPvig 94 (267)
T 2gzm_A 56 EMTEHLLDLNIKMLVIACNTATAVVLEEMQKQLPIPVVG 94 (267)
T ss_dssp HHHHHHHTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHHCCCCEEEEeCchhhHHHHHHHHHhCCCCEEe
Confidence 344445555898888765555545666777788999997
No 234
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=69.97 E-value=12 Score=38.70 Aligned_cols=79 Identities=11% Similarity=0.012 Sum_probs=59.7
Q ss_pred eEEEEEEEe--CCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcChh-hHHHHHHHH
Q 002267 184 REVIAIFVD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPD-TGLTIFSVA 260 (945)
Q Consensus 184 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~~-~~~~~~~~a 260 (945)
++|+++..+ ++|.......+++++++.|..+..... . .+.......++.+...++|.||+..... .....++++
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~--~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 79 (313)
T 3m9w_A 3 VKIGMAIDDLRLERWQKDRDIFVKKAESLGAKVFVQSA-N--GNEETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKEA 79 (313)
T ss_dssp CEEEEEESCCSSSTTHHHHHHHHHHHHHTSCEEEEEEC-T--TCHHHHHHHHHHHHHTTCSEEEEECSSTTSCHHHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECC-C--CCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHH
Confidence 578888864 788889999999999999998876533 2 3455556778888888999999876443 345678888
Q ss_pred HhCCC
Q 002267 261 KSLGM 265 (945)
Q Consensus 261 ~~~g~ 265 (945)
.+.|+
T Consensus 80 ~~~~i 84 (313)
T 3m9w_A 80 KQEGI 84 (313)
T ss_dssp HTTTC
T ss_pred HHCCC
Confidence 87764
No 235
>3k6v_A Solute-binding protein MA_0280; MODA, molybdate, periplasmic BIN protein, ABC transporter, transport protein, ligand, metal- protein; HET: CIT; 1.69A {Methanosarcina acetivorans} PDB: 3k6u_A* 3k6w_A 3k6x_A
Probab=69.90 E-value=51 Score=34.84 Aligned_cols=69 Identities=9% Similarity=0.075 Sum_probs=43.9
Q ss_pred HHHHHHHHhC-CCCccEEEEEcCCCCCCCCHHHHHHHHH-cC-cccEEEecEEEecCc---ceeEEecccccccceEEEE
Q 002267 516 DVFEAAVNLL-PYPVPHNYIMYGNGKRNPIYNDIVQQVA-LN-KFDAAVGDITIVTNR---TKLVDFTQPYMESGLVVVA 589 (945)
Q Consensus 516 dll~~l~~~l-~~~~~~~~~~~~~~~~~~~~~~~i~~l~-~g-~~D~~~~~~~~t~~r---~~~~dfs~p~~~~~~~~vv 589 (945)
+|.+.+.++. |.++++.+ +.-..++.++. .| .+|+.++.-.-..++ ....+...+|....+++++
T Consensus 59 ~l~~~Fe~~~pgv~V~~~~---------ggSg~l~~qi~e~G~~aDVf~sad~~~~~~l~~~g~~~~~~~~a~n~lVliv 129 (354)
T 3k6v_A 59 ELEAEFEAQHPGVDVQREA---------AGSAQSVRKITELGKKADVLASADYALIPSLMVPEYADWYAAFARNQMILAY 129 (354)
T ss_dssp HHHHHHHHHSTTCEEEEEE---------ECHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCEEEEEECCEEEEE
T ss_pred HHHHHHHHHCCCcEEEEEe---------CCHHHHHHHHHhcCCCccEEEECCHHHHHHHHhCCCCCCceEeECCeEEEEE
Confidence 6788888887 87766655 33567888885 35 689887532111111 1123445678888899999
Q ss_pred EccC
Q 002267 590 PVQK 593 (945)
Q Consensus 590 ~~~~ 593 (945)
|+..
T Consensus 130 ~~~~ 133 (354)
T 3k6v_A 130 TNES 133 (354)
T ss_dssp CTTS
T ss_pred ECCC
Confidence 8776
No 236
>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A*
Probab=69.37 E-value=17 Score=37.02 Aligned_cols=116 Identities=10% Similarity=0.026 Sum_probs=60.3
Q ss_pred HHHHHHhcCcEEEEccCChhHHHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHcCCeEE
Q 002267 107 EALQLMENEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREV 186 (945)
Q Consensus 107 ~a~~li~~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v 186 (945)
.+..|.+.++.+|+-+-.+..+.++..+-+..++|+|... -.++...++..+-++|
T Consensus 66 ~~~~L~~~g~d~iviaCNTas~~~l~~lr~~~~iPvigi~------------------------epa~~~A~~~~~~~rI 121 (273)
T 2oho_A 66 LVNFLLTQNVKMIVFACNTATAVAWEEVKAALDIPVLGVV------------------------LPGASAAIKSTTKGQV 121 (273)
T ss_dssp HHHHHHTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEESH------------------------HHHHHHHHHHCSSSEE
T ss_pred HHHHHHHCCCCEEEEeCchHhHHHHHHHHHhCCCCEEecc------------------------HHHHHHHHHhcCCCeE
Confidence 3344445589888876555555556677777899999620 0112222334466788
Q ss_pred EEEEEeCCcccchHHHHHHHHhhc--CcEEEEeec------CCCC-CC----hHHHHHHHHhhccCCceEEEEEcCh
Q 002267 187 IAIFVDDDYGRNGISVLGDALSKK--RAKISYKAP------FSPG-AS----RSAINSLLVGANLMESRVFVVHVNP 250 (945)
Q Consensus 187 ~ii~~d~~~g~~~~~~l~~~l~~~--g~~v~~~~~------~~~~-~~----~~d~~~~l~~l~~~~~~vivl~~~~ 250 (945)
+++.+....- ...+++.+++. |++|..... +..+ .+ ...+...+..+... +|+||+.|..
T Consensus 122 gVlaT~~T~~---~~~y~~~l~~~~~g~~v~~~~~~~~v~~ie~g~~~~~~~~~~l~~~~~~l~~~-~d~iVLGCTh 194 (273)
T 2oho_A 122 GVIGTPMTVA---SDIYRKKIQLLAPSIQVRSLACPKFVPIVESNEMCSSIAKKIVYDSLAPLVGK-IDTLVLGCTH 194 (273)
T ss_dssp EEEECHHHHH---HTHHHHHHHHHCTTSEEEEEECTTHHHHHCC-----HHHHHHHHHHHTTTTTS-CSEEEECSTT
T ss_pred EEEECchhhc---chHHHHHHHHhCCCCEEEecCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEcCCC
Confidence 8887542111 12234455554 666653210 0000 01 12334455555545 7888887644
No 237
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=67.79 E-value=9.3 Score=39.44 Aligned_cols=81 Identities=14% Similarity=0.113 Sum_probs=59.0
Q ss_pred eEEEEEEEe--CCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcC-hhhHHHHHHHH
Q 002267 184 REVIAIFVD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN-PDTGLTIFSVA 260 (945)
Q Consensus 184 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~-~~~~~~~~~~a 260 (945)
++|++|..+ ++|.....+.+++++++.|..+.....-. .+.......++.+...++|.||+... .......++++
T Consensus 5 ~~I~~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~--~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 82 (305)
T 3g1w_A 5 ETYMMITFQSGMDYWKRCLKGFEDAAQALNVTVEYRGAAQ--YDIQEQITVLEQAIAKNPAGIAISAIDPVELTDTINKA 82 (305)
T ss_dssp CEEEEEESSTTSTHHHHHHHHHHHHHHHHTCEEEEEECSS--SCHHHHHHHHHHHHHHCCSEEEECCSSTTTTHHHHHHH
T ss_pred ceEEEEEccCCChHHHHHHHHHHHHHHHcCCEEEEeCCCc--CCHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHH
Confidence 678888754 67778889999999999999887532222 34555667788877789999998753 34456678888
Q ss_pred HhCCCC
Q 002267 261 KSLGMT 266 (945)
Q Consensus 261 ~~~g~~ 266 (945)
.+.|+.
T Consensus 83 ~~~~iP 88 (305)
T 3g1w_A 83 VDAGIP 88 (305)
T ss_dssp HHTTCC
T ss_pred HHCCCc
Confidence 887753
No 238
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=67.43 E-value=14 Score=37.44 Aligned_cols=79 Identities=9% Similarity=-0.016 Sum_probs=58.9
Q ss_pred CCeEEEEEEEe--CCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcChhhHHHHHHH
Q 002267 182 GWREVIAIFVD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSV 259 (945)
Q Consensus 182 ~w~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~~~~~~~~~~ 259 (945)
.-+.|+++..+ ++|.......+.+++++.|..+.....- .+...-...++.+...++|.||+..... ...++.
T Consensus 6 ~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~l~~~~vdgiIi~~~~~--~~~~~~ 80 (276)
T 3jy6_A 6 SSKLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDAN---ADIEREKTLLRAIGSRGFDGLILQSFSN--PQTVQE 80 (276)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEECT---TCHHHHHHHHHHHHTTTCSEEEEESSCC--HHHHHH
T ss_pred CCcEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCC---CCHHHHHHHHHHHHhCCCCEEEEecCCc--HHHHHH
Confidence 34678888865 5677888999999999999988754322 2445556778888888999999986555 667777
Q ss_pred HHhCCC
Q 002267 260 AKSLGM 265 (945)
Q Consensus 260 a~~~g~ 265 (945)
+.+.|+
T Consensus 81 l~~~~i 86 (276)
T 3jy6_A 81 ILHQQM 86 (276)
T ss_dssp HHTTSS
T ss_pred HHHCCC
Confidence 877665
No 239
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=67.07 E-value=13 Score=38.01 Aligned_cols=81 Identities=5% Similarity=-0.038 Sum_probs=59.9
Q ss_pred CeEEEEEEEe--CCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcC-hhhHHHHHHH
Q 002267 183 WREVIAIFVD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN-PDTGLTIFSV 259 (945)
Q Consensus 183 w~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~-~~~~~~~~~~ 259 (945)
-++|+++..+ +.|.......+.+++++.|.++.....- .+.......++.+...++|.||+... .......++.
T Consensus 5 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~ 81 (291)
T 3l49_A 5 GKTIGITAIGTDHDWDLKAYQAQIAEIERLGGTAIALDAG---RNDQTQVSQIQTLIAQKPDAIIEQLGNLDVLNPWLQK 81 (291)
T ss_dssp TCEEEEEESCCSSHHHHHHHHHHHHHHHHTTCEEEEEECT---TCHHHHHHHHHHHHHHCCSEEEEESSCHHHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEcCC---CCHHHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHH
Confidence 3678888864 5677788899999999999988765321 34455567788888889999998754 3456677888
Q ss_pred HHhCCCC
Q 002267 260 AKSLGMT 266 (945)
Q Consensus 260 a~~~g~~ 266 (945)
+.+.|+.
T Consensus 82 ~~~~~iP 88 (291)
T 3l49_A 82 INDAGIP 88 (291)
T ss_dssp HHHTTCC
T ss_pred HHHCCCc
Confidence 8887753
No 240
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=66.09 E-value=26 Score=35.52 Aligned_cols=39 Identities=10% Similarity=0.217 Sum_probs=27.3
Q ss_pred HHHHHHHhcCcEEEEccCChhHHHHHHHhhcccCccEEe
Q 002267 106 MEALQLMENEVVAAIGPQSSGIAHVISHVVNELNVPLLS 144 (945)
Q Consensus 106 ~~a~~li~~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is 144 (945)
+.+..|.+.++.+|+=+-.+..+.++..+-+..++|+|.
T Consensus 58 ~~~~~L~~~g~~~IVIACNTa~~~al~~lr~~~~iPvig 96 (269)
T 3ist_A 58 EMTNFLVDRGIKMLVIACNTATAAALYDIREKLDIPVIG 96 (269)
T ss_dssp HHHHHHHHTTCSEEEECCHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHHCCCCEEEEeCCCccHHHHHHHHHhcCCCEEe
Confidence 344455556998888765555555566777788999996
No 241
>1r9l_A Glycine betaine-binding periplasmic protein; periplasmic binding protein, cation-PI interactions, tryptophan BOX, protein binding; 1.59A {Escherichia coli} SCOP: c.94.1.1 PDB: 1r9q_A*
Probab=65.96 E-value=13 Score=38.66 Aligned_cols=40 Identities=18% Similarity=0.013 Sum_probs=29.5
Q ss_pred HHHHHHHHHhCCCCccEEEEEcCCCCCCCCHHHHHHHHHcCcccEEEe
Q 002267 515 IDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVG 562 (945)
Q Consensus 515 ~dll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~ 562 (945)
..+++.+.+.+|+++++... .+..-+.+.|.+|++|+...
T Consensus 24 ~~i~~~~Le~~Gy~Ve~~~~--------~~~~~~~~Al~~G~iDi~~e 63 (309)
T 1r9l_A 24 TLLVSRALEKLGYTVNKPSE--------VDYNVGYTSLASGDATFTAV 63 (309)
T ss_dssp HHHHHHHHHHTTCEECCCEE--------CCHHHHHHHHHHTSSCEEEE
T ss_pred HHHHHHHHHHcCCCeEEeec--------CchHHHHHHHhcCCceEEec
Confidence 35667777788988665432 34577888999999999865
No 242
>4ef1_A Pheromone COB1/lipoprotein, YAEC family; periplasmic methionine binding protein, NLPA lipoprotein, ST genomics; 1.90A {Enterococcus faecalis} PDB: 4ef2_A*
Probab=65.83 E-value=53 Score=32.50 Aligned_cols=120 Identities=10% Similarity=0.097 Sum_probs=61.6
Q ss_pred CCCCChHHhhcCCCCeEEeeCchHHHH---HHHhhccc---------------------cccc-eecCCHHHHHHHHhcC
Q 002267 700 SQIEGIDSLISSTEPIGVQDGSFAWNY---LVDELKIA---------------------ESRL-VKLKNMEEYSIALARG 754 (945)
Q Consensus 700 ~~i~~~~dL~~~~~~v~~~~~s~~~~~---l~~~~~~~---------------------~~~~-~~~~~~~~~~~~l~~~ 754 (945)
..+++++||. .|.+|++.++...... +-+..++- .-++ ++. ...+...++..
T Consensus 91 ~kiksl~dL~-~Ga~IAIpnd~sn~~RaL~lL~~~GLI~Lk~~~~~~~~t~~DI~~Npk~l~~~~el-~aaql~~al~d- 167 (246)
T 4ef1_A 91 KKYKSLQEIP-DGSTIYVSSSVSDWPRVLTILEDAGLITLKEGVDRTTATFDDIDKNTKKLKFNHES-DPAIMTTLYDN- 167 (246)
T ss_dssp SSCSSGGGSC-TTCEEEEESCGGGHHHHHHHHHHTTSEEECTTCCGGGCCGGGEEEETTCCEEEEEE-CGGGHHHHHHT-
T ss_pred CCCCCHHHcC-CCCEEEeecCCchHHHHHHHHHHCCCeeecCCCCcCcCCHhHHhcCCCccEEeeec-CHHHHHHHhcc-
Confidence 4689999997 4888999887754322 11122220 0133 344 45677888888
Q ss_pred CCCCceeEEecchhhHHHHhccCCc--cEEEeCccccccceEEEecCCCcchHHHHHHHHhccccccHHHHHHHh
Q 002267 755 PKGGGVAAIVDELPYIELFMSKTNC--EFRTVGQEFTKSGWGFAFQRDSPLAIDLSTAILQLSENGDLQKIHNKW 827 (945)
Q Consensus 755 ~~~g~~~a~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~k~spl~~~i~~~i~~l~e~G~~~~i~~~w 827 (945)
|++|+.+....|..-.- - .. +-......-.++.-.++++++.-=.+.+.+.+.-+++...-+.|.++|
T Consensus 168 ---g~vDaavin~n~a~~ag-l-~p~~dal~~E~~~~~y~n~i~vr~~~~~~~~~k~lv~~~~s~~v~~~i~~~~ 237 (246)
T 4ef1_A 168 ---EEGAAVLINSNFAVDQG-L-NPKKDAIALEKESSPYANIIAVRKEDENNENVKKLVKVLRSKEVQDWITKKW 237 (246)
T ss_dssp ---TCSSEEEECHHHHHHTT-C-CHHHHCSEECSCCGGGCEEEEEEGGGTTCHHHHHHHHHHHSHHHHHHHHHHT
T ss_pred ---ccccEEEEechHHHHcC-C-CCccCceEEcCCCCCeEEEEEEeccccCCHHHHHHHHHHcCHHHHHHHHHHc
Confidence 88998887766543210 0 11 111122211223335667654333333333333344444444555555
No 243
>3ce9_A Glycerol dehydrogenase; NP_348253.1, 3-dehydroquinate syntha structural genomics, joint center for structural genomics; HET: MSE; 2.37A {Clostridium acetobutylicum atcc 824}
Probab=65.80 E-value=15 Score=39.19 Aligned_cols=109 Identities=8% Similarity=0.073 Sum_probs=69.7
Q ss_pred CceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEeCCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhc
Q 002267 158 PYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGAN 237 (945)
Q Consensus 158 p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~ 237 (945)
|+-+...+... ..+.++++.+|.+++.+|++...+. ...+.+.+.+++.|+++...... +..+.+.+... +.++
T Consensus 12 p~~i~~G~g~~---~~l~~~l~~~g~~~~livtd~~~~~-~~~~~v~~~L~~~g~~~~~~~~~-~~~~~~~v~~~-~~~~ 85 (354)
T 3ce9_A 12 PLILEVGNNKI---YNIGQIIKKGNFKRVSLYFGEGIYE-LFGETIEKSIKSSNIEIEAVETV-KNIDFDEIGTN-AFKI 85 (354)
T ss_dssp CSEEEEESSCG---GGHHHHHGGGTCSEEEEEEETTHHH-HHHHHHHHHHHTTTCEEEEEEEE-CCCBHHHHHHH-HTTS
T ss_pred CcEEEECCCHH---HHHHHHHHhcCCCeEEEEECccHHH-HHHHHHHHHHHHcCCeEEEEecC-CCCCHHHHHHH-HHhh
Confidence 44444444432 2356677778888998888655443 46788889999999877543322 33567778888 8888
Q ss_pred cCCceEEEEEcC--hhhHHHHHHHHHhCCCCCCCeEEEEeCC
Q 002267 238 LMESRVFVVHVN--PDTGLTIFSVAKSLGMTAGSYVWIATDW 277 (945)
Q Consensus 238 ~~~~~vivl~~~--~~~~~~~~~~a~~~g~~~~~~~wi~~~~ 277 (945)
+.++|+||-.+. .-++.+++... .|+ .++-|-|..
T Consensus 86 ~~~~d~IIavGGGsv~D~aK~vA~~--~~~---p~i~IPTT~ 122 (354)
T 3ce9_A 86 PAEVDALIGIGGGKAIDAVKYMAFL--RKL---PFISVPTST 122 (354)
T ss_dssp CTTCCEEEEEESHHHHHHHHHHHHH--HTC---CEEEEESCC
T ss_pred hcCCCEEEEECChHHHHHHHHHHhh--cCC---CEEEecCcc
Confidence 889999997654 44666666533 232 345555543
No 244
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=65.43 E-value=16 Score=38.47 Aligned_cols=88 Identities=6% Similarity=-0.126 Sum_probs=57.4
Q ss_pred HHHHHHcCCeEEEEEEEe----CCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcCh
Q 002267 175 ADLVEYYGWREVIAIFVD----DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNP 250 (945)
Q Consensus 175 ~~~l~~~~w~~v~ii~~d----~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~ 250 (945)
+.-++.-.-+.|+++..+ ++|.......+.+++++.|..+.....- .+...-...++.+...+.|.||+....
T Consensus 53 a~~l~~~~~~~Igvi~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~l~~~~vdgiIi~~~~ 129 (338)
T 3dbi_A 53 ARNLSAKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADGK---HSAEEERQAIQYLLDLRCDAIMIYPRF 129 (338)
T ss_dssp -------CCSEEEEEECTTTTSTTHHHHHHHHHHHHHHHTTCEEEEEECT---TSHHHHHHHHHHHHHTTCSEEEECCSS
T ss_pred HHHhhhCCCCEEEEEecCCcccChhHHHHHHHHHHHHHHCCCEEEEEeCC---CChHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 333444456789998865 4566778899999999999988754321 244445567788888899999987654
Q ss_pred hhHHHHHHHHHhCCC
Q 002267 251 DTGLTIFSVAKSLGM 265 (945)
Q Consensus 251 ~~~~~~~~~a~~~g~ 265 (945)
.....+.+.+.+.++
T Consensus 130 ~~~~~~~~~~~~~~i 144 (338)
T 3dbi_A 130 LSVDEIDDIIDAHSQ 144 (338)
T ss_dssp SCHHHHHHHHHHCSS
T ss_pred CChHHHHHHHHcCCC
Confidence 444456666666664
No 245
>1nh8_A ATP phosphoribosyltransferase; prtase, de novo His biosynthesis, PRPP, structural genomics, PSI, protei structure initiative; HET: AMP HIS; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.94.1.1 d.58.5.3 PDB: 1nh7_A*
Probab=64.99 E-value=14 Score=37.77 Aligned_cols=101 Identities=14% Similarity=0.100 Sum_probs=64.5
Q ss_pred CCChHHhhcCCCCeEEeeCchHHHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceeEEecchhhHHHHhccCCccE
Q 002267 702 IEGIDSLISSTEPIGVQDGSFAWNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTNCEF 781 (945)
Q Consensus 702 i~~~~dL~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~ 781 (945)
+++++||. +++|+...-.....||. +.+++ .+++.....-|..-.+ |-.|++++-........++ +|
T Consensus 121 ~~~~~~l~--~~RIATkYp~l~r~yf~-~~gi~-~~Ii~l~GsvE~aP~~------GlADaIvDiVsTG~TLraN---gL 187 (304)
T 1nh8_A 121 NWTTADLA--GMRIATAYPNLVRKDLA-TKGIE-ATVIRLDGAVEISVQL------GVADAIADVVGSGRTLSQH---DL 187 (304)
T ss_dssp CCCGGGGT--TCEEEESCHHHHHHHHH-HHTCC-CEEEECSSCCTHHHHT------TSCSEEEEEESSSHHHHHT---TE
T ss_pred cCChHHhC--CCEEEeCcHHHHHHHHH-HCCCe-EEEEECCCceeeccCC------CcccEEEEEeCChHHHHHC---cC
Confidence 45677885 78898887778888885 45554 5666666555655444 7789999887776666555 57
Q ss_pred EEeCccccccceEEEecCCCc-c--hHHHHHHHHhcc
Q 002267 782 RTVGQEFTKSGWGFAFQRDSP-L--AIDLSTAILQLS 815 (945)
Q Consensus 782 ~~~~~~~~~~~~~~~~~k~sp-l--~~~i~~~i~~l~ 815 (945)
.++++.+....-.+...+.+. . .+.++..+.+|.
T Consensus 188 ~~i~e~I~~SsA~LI~n~~s~~~~k~~~i~~l~~rl~ 224 (304)
T 1nh8_A 188 VAFGEPLCDSEAVLIERAGTDGQDQTEARDQLVARVQ 224 (304)
T ss_dssp EEEEEEEEEECEEEEEEC--------CHHHHHHHHHH
T ss_pred EEcccEEEEEEEEEEEccccchhhhHHHHHHHHHHHH
Confidence 777555555566666666652 2 235666666554
No 246
>3cij_A UPF0100 protein AF_0094; archaeal periplasmic binding protein, unknown function, metal binding protein, transport protein; 1.07A {Archaeoglobus fulgidus} PDB: 2ons_A 2onk_E 2onr_A
Probab=64.58 E-value=87 Score=31.83 Aligned_cols=71 Identities=8% Similarity=-0.015 Sum_probs=44.9
Q ss_pred eHHHHHHHHHh-CCCCccEEEEEcCCCCCCCCHHHHHHHHHc-Cc-ccEEEecEEE--ec-CcceeEEecccccccceEE
Q 002267 514 CIDVFEAAVNL-LPYPVPHNYIMYGNGKRNPIYNDIVQQVAL-NK-FDAAVGDITI--VT-NRTKLVDFTQPYMESGLVV 587 (945)
Q Consensus 514 ~~dll~~l~~~-l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~-g~-~D~~~~~~~~--t~-~r~~~~dfs~p~~~~~~~~ 587 (945)
.-++++.+.++ -|.++++.+ ++...++.+|.. |. +|+.+..-.. .. .....++...||....+++
T Consensus 19 ~~~l~~~F~~~~~gi~V~~~~---------~~s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~~~~~lvl 89 (295)
T 3cij_A 19 MKAFKRAFEEKHPNVEVQTEA---------AGSAATIRKVTELGRKADVIATADYTLIQKMMYPEFANWTIMFAKNQIVL 89 (295)
T ss_dssp HHHHHHHHHHHCTTCEEEEEE---------ECHHHHHHHHHTSCCCCSEEEESSTHHHHHHHTTTTCCCCEEEEECCEEE
T ss_pred HHHHHHHHHHHCCCceEEEEe---------CcHHHHHHHHHhCCCCCCEEEEcChhhHHHHHhCCCcceeeEEEeeeEEE
Confidence 34677788777 487755544 446778899988 75 8998753111 10 1112234567788888888
Q ss_pred EEEccC
Q 002267 588 VAPVQK 593 (945)
Q Consensus 588 vv~~~~ 593 (945)
++++..
T Consensus 90 ~~~~~~ 95 (295)
T 3cij_A 90 AYRNDS 95 (295)
T ss_dssp EECTTS
T ss_pred EEeCCC
Confidence 887765
No 247
>3l6g_A Betaine ABC transporter permease and substrate BI protein; glycine betaine binding, substrate binding domain, venus FLY cell membrane; HET: B3P; 1.90A {Lactococcus lactis} PDB: 3l6h_A
Probab=64.27 E-value=23 Score=35.62 Aligned_cols=43 Identities=21% Similarity=0.084 Sum_probs=32.2
Q ss_pred eeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHHHHHHHHHcCcccEEEecE
Q 002267 513 YCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDI 564 (945)
Q Consensus 513 ~~~dll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~~ 564 (945)
+...|++.+.+.+|+++++ .+ ++-.-+.+.|.+|++|+.....
T Consensus 16 i~~~i~~~~Le~~G~~Ve~--~~-------~~~~~~~~al~~G~iD~~~e~w 58 (256)
T 3l6g_A 16 ASINVLTQAMKEHGFDVKT--TA-------LDNAVAWQTVANGQADGMVSAW 58 (256)
T ss_dssp HHHHHHHHHHHHTTEEEEE--EE-------CCHHHHHHHHHTTSSSEEEEEE
T ss_pred HHHHHHHHHHHHCCCceEE--EE-------CChHHHHHHHHCCCCeEEEccc
Confidence 4567888888888987554 44 3456788999999999987643
No 248
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=64.18 E-value=18 Score=36.86 Aligned_cols=79 Identities=9% Similarity=-0.019 Sum_probs=58.6
Q ss_pred eEEEEEEEe--CCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcChh----hHHHHH
Q 002267 184 REVIAIFVD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPD----TGLTIF 257 (945)
Q Consensus 184 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~~----~~~~~~ 257 (945)
+.|+++..+ ++|.....+.+++++++.|..+.....- .+...-...++.+...++|.||+..... .....+
T Consensus 16 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 92 (298)
T 3tb6_A 16 KTIGVLTTYISDYIFPSIIRGIESYLSEQGYSMLLTSTN---NNPDNERRGLENLLSQHIDGLIVEPTKSALQTPNIGYY 92 (298)
T ss_dssp CEEEEEESCSSSTTHHHHHHHHHHHHHHTTCEEEEEECT---TCHHHHHHHHHHHHHTCCSEEEECCSSTTSCCTTHHHH
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCC---CChHHHHHHHHHHHHCCCCEEEEecccccccCCcHHHH
Confidence 789999865 6677888999999999999988764322 2445556778888888999999875432 345677
Q ss_pred HHHHhCCC
Q 002267 258 SVAKSLGM 265 (945)
Q Consensus 258 ~~a~~~g~ 265 (945)
+++.+.|+
T Consensus 93 ~~~~~~~i 100 (298)
T 3tb6_A 93 LNLEKNGI 100 (298)
T ss_dssp HHHHHTTC
T ss_pred HHHHhcCC
Confidence 77887775
No 249
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.75A {Parabacteroides distasonis}
Probab=63.59 E-value=8.3 Score=39.59 Aligned_cols=60 Identities=15% Similarity=0.119 Sum_probs=41.3
Q ss_pred CCCeEEe-eCchHHHHHHH---hhccccccceecC-CHHHHHHHHhcCCCCCceeEEecchhhHHHHhcc
Q 002267 712 TEPIGVQ-DGSFAWNYLVD---ELKIAESRLVKLK-NMEEYSIALARGPKGGGVAAIVDELPYIELFMSK 776 (945)
Q Consensus 712 ~~~v~~~-~~s~~~~~l~~---~~~~~~~~~~~~~-~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~ 776 (945)
|++|++. .|+.....++. +.++ ..+++... +..+...++.+ |++|+.+...|+......+
T Consensus 96 GK~Iav~~~gs~~~~ll~~~L~~~Gl-dv~~~~~~~~~~~~~~al~~----G~vDa~~~~eP~~~~a~~~ 160 (283)
T 3hn0_A 96 EPALYVFGNGTTPDILTRYYLGRQRL-DYPLNYAFNTAGEITQGILA----GKVNRAVLGEPFLSIALRK 160 (283)
T ss_dssp SCCEECSSTTSHHHHHHHHHHHHHTC-CCCEECSCCSHHHHHHHHHH----TSCSEEEECTTHHHHHHHH
T ss_pred CCEEEecCCCCcHHHHHHHHHHHcCC-ceEEEEccCCHHHHHHHHHc----CCCCEEEecccHHHHHHhh
Confidence 8899975 56654443332 3344 23444444 68999999999 8999998888887765544
No 250
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=63.43 E-value=22 Score=33.21 Aligned_cols=63 Identities=16% Similarity=0.153 Sum_probs=48.4
Q ss_pred eEEEEEEEeCCccc---chHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccC-CceEEEEEc
Q 002267 184 REVIAIFVDDDYGR---NGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLM-ESRVFVVHV 248 (945)
Q Consensus 184 ~~v~ii~~d~~~g~---~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~-~~~vivl~~ 248 (945)
-++++|...|+-|+ .....+.+.+++.|+++.....++ .+.+++...+++..+. ++|+||..+
T Consensus 11 ~~v~Ii~tGdE~g~i~D~n~~~l~~~L~~~G~~v~~~~iv~--Dd~~~i~~~l~~a~~~~~~DlVittG 77 (172)
T 1mkz_A 11 TRIAILTVSNRRGEEDDTSGHYLRDSAQEAGHHVVDKAIVK--ENRYAIRAQVSAWIASDDVQVVLITG 77 (172)
T ss_dssp CEEEEEEECSSCCGGGCHHHHHHHHHHHHTTCEEEEEEEEC--SCHHHHHHHHHHHHHSSSCCEEEEES
T ss_pred CEEEEEEEeCCCCcccCccHHHHHHHHHHCCCeEeEEEEeC--CCHHHHHHHHHHHHhcCCCCEEEeCC
Confidence 47888887776664 235678889999999998877777 4667888888887654 689999875
No 251
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=63.02 E-value=15 Score=37.56 Aligned_cols=81 Identities=10% Similarity=0.030 Sum_probs=58.4
Q ss_pred CCeEEEEEEEe--CCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcC-hhhHHHHHH
Q 002267 182 GWREVIAIFVD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN-PDTGLTIFS 258 (945)
Q Consensus 182 ~w~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~-~~~~~~~~~ 258 (945)
.-++|+++..+ ++|.......+.+++++.|..+.....- .+.......++.+...++|.||+... .......++
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~ 83 (293)
T 3l6u_A 7 KRNIVGFTIVNDKHEFAQRLINAFKAEAKANKYEALVATSQ---NSRISEREQILEFVHLKVDAIFITTLDDVYIGSAIE 83 (293)
T ss_dssp --CEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEECS---SCHHHHHHHHHHHHHTTCSEEEEECSCTTTTHHHHH
T ss_pred CCcEEEEEEecCCcHHHHHHHHHHHHHHHHcCCEEEEECCC---CCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHH
Confidence 34678888864 6677788899999999999988764322 34555567788888889999998754 444457778
Q ss_pred HHHhCCC
Q 002267 259 VAKSLGM 265 (945)
Q Consensus 259 ~a~~~g~ 265 (945)
++.+.|+
T Consensus 84 ~~~~~~i 90 (293)
T 3l6u_A 84 EAKKAGI 90 (293)
T ss_dssp HHHHTTC
T ss_pred HHHHcCC
Confidence 8887775
No 252
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=62.66 E-value=19 Score=36.96 Aligned_cols=78 Identities=12% Similarity=0.072 Sum_probs=58.0
Q ss_pred eEEEEEEEe--CCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcC-hhhHHHHHHHH
Q 002267 184 REVIAIFVD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN-PDTGLTIFSVA 260 (945)
Q Consensus 184 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~-~~~~~~~~~~a 260 (945)
.+|+++..+ ++|.....+.+.+++++.|.++..... .+.......++.+...++|.||+... .......++++
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~----~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~ 78 (306)
T 8abp_A 3 LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV----PDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKA 78 (306)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHHHTEEEEEEEC----CSHHHHHHHHHHHHHTTCCEEEEECSCGGGHHHHHHHH
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCC----CCHHHHHHHHHHHHHcCCCEEEEeCCCchhhHHHHHHH
Confidence 468888764 677788899999999999998865432 24555567788888889999998754 44556678888
Q ss_pred HhCCC
Q 002267 261 KSLGM 265 (945)
Q Consensus 261 ~~~g~ 265 (945)
.+.|+
T Consensus 79 ~~~~i 83 (306)
T 8abp_A 79 RGYDM 83 (306)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 88775
No 253
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=62.51 E-value=9 Score=38.68 Aligned_cols=79 Identities=9% Similarity=-0.013 Sum_probs=56.9
Q ss_pred eEEEEEEEe--CCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcChhhHHHHHHHHH
Q 002267 184 REVIAIFVD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAK 261 (945)
Q Consensus 184 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~~~~~~~~~~a~ 261 (945)
+.|+++..+ ++|.....+.+.+++++.|..+..... . .+.......++.+...++|.||+..........++.+.
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~--~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 79 (272)
T 3o74_A 3 RTLGFILPDLENPSYARIAKQLEQGARARGYQLLIASS-D--DQPDSERQLQQLFRARRCDALFVASCLPPEDDSYRELQ 79 (272)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEEC-T--TCHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHH
T ss_pred eEEEEEeCCCcChhHHHHHHHHHHHHHHCCCEEEEEeC-C--CCHHHHHHHHHHHHHcCCCEEEEecCccccHHHHHHHH
Confidence 578888865 567788899999999999998875432 1 34455567788888889999998754422345667777
Q ss_pred hCCC
Q 002267 262 SLGM 265 (945)
Q Consensus 262 ~~g~ 265 (945)
+.|+
T Consensus 80 ~~~i 83 (272)
T 3o74_A 80 DKGL 83 (272)
T ss_dssp HTTC
T ss_pred HcCC
Confidence 7665
No 254
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=62.44 E-value=15 Score=38.79 Aligned_cols=80 Identities=5% Similarity=-0.041 Sum_probs=57.9
Q ss_pred CeEEEEEEEe--C-CcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhcc--CCceEEEEEcChhhHHHHH
Q 002267 183 WREVIAIFVD--D-DYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANL--MESRVFVVHVNPDTGLTIF 257 (945)
Q Consensus 183 w~~v~ii~~d--~-~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~--~~~~vivl~~~~~~~~~~~ 257 (945)
-.+|++|..+ + +|.......+++++++.|.++..... . .+.......++.+.. .++|.||+.........++
T Consensus 3 ~~~Ig~i~p~~~~~~f~~~~~~g~~~~a~~~g~~~~~~~~-~--~~~~~~~~~i~~~i~~~~~vDgiIi~~~~~~~~~~~ 79 (350)
T 3h75_A 3 LTSVVFLNPGNSTETFWVSYSQFMQAAARDLGLDLRILYA-E--RDPQNTLQQARELFQGRDKPDYLMLVNEQYVAPQIL 79 (350)
T ss_dssp CCEEEEEECSCTTCHHHHHHHHHHHHHHHHHTCEEEEEEC-T--TCHHHHHHHHHHHHHSSSCCSEEEEECCSSHHHHHH
T ss_pred CCEEEEECCCCCCChHHHHHHHHHHHHHHHcCCeEEEEEC-C--CCHHHHHHHHHHHHhcCCCCCEEEEeCchhhHHHHH
Confidence 4688999865 3 67788899999999999998876522 1 244444556666666 5899999986555667778
Q ss_pred HHHHhCCC
Q 002267 258 SVAKSLGM 265 (945)
Q Consensus 258 ~~a~~~g~ 265 (945)
+.+.+.|+
T Consensus 80 ~~~~~~gi 87 (350)
T 3h75_A 80 RLSQGSGI 87 (350)
T ss_dssp HHHTTSCC
T ss_pred HHHHhCCC
Confidence 88887665
No 255
>2czl_A Hypothetical protein TTHA1568; conserved hypothetical protein, extremely thermoph bacteria, structural genomics, NPPSFA; HET: CME TLA XPE; 1.55A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 2dbp_A* 3a3u_A*
Probab=62.21 E-value=9.2 Score=38.78 Aligned_cols=59 Identities=14% Similarity=0.052 Sum_probs=38.6
Q ss_pred hHHhhcCCCCeEEeeCchHHHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceeEEecc-hhhHH
Q 002267 705 IDSLISSTEPIGVQDGSFAWNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDE-LPYIE 771 (945)
Q Consensus 705 ~~dL~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~-~~~~~ 771 (945)
++||. |++|++..++....++.+..- ...+++.. ...+...++.+ |++|+.+.- .+++.
T Consensus 91 ~~dLk--Gk~Ia~~~~~~~~~~ll~~ll-~~~~~~~~-~~~~~~~al~~----G~vDa~~~~~ep~~~ 150 (272)
T 2czl_A 91 LQALE--GLRVAVPGRHTTAYFLLSLYA-QGFVPVEV-RYDRILPMVAQ----GEVEAGLIIHESRFT 150 (272)
T ss_dssp CSCCT--TCEEEESCTTSHHHHHHHHHC-SSCEEEEC-CGGGHHHHHHT----TSSSEEEECTTHHHH
T ss_pred hHHhC--CCEEEeCCCCchHHHHHHHHh-ccCceeec-ChHHHHHHHHC----CCCCEEEEecchhhh
Confidence 67886 899999875555444333221 11234433 45688899998 899998875 66666
No 256
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=61.95 E-value=31 Score=37.35 Aligned_cols=92 Identities=16% Similarity=0.074 Sum_probs=62.4
Q ss_pred CeEEEEEEEeCCccc--chHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcCh------hhHH
Q 002267 183 WREVIAIFVDDDYGR--NGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNP------DTGL 254 (945)
Q Consensus 183 w~~v~ii~~d~~~g~--~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~------~~~~ 254 (945)
-++|+|+| ++.||. ..++.+.+.+.+.|+++....... ...+++..++..+. +++.+++.+.. +...
T Consensus 265 ~~~v~I~Y-~S~yGnTe~mA~~ia~gl~~~Gv~~~~~~~~d--~~~~~~s~i~~~i~--~~~~ivlGspT~~~~~~p~~~ 339 (410)
T 4dik_A 265 KGKVTVIY-DSMYGFVENVMKKAIDSLKEKGFTPVVYKFSD--EERPAISEILKDIP--DSEALIFGVSTYEAEIHPLMR 339 (410)
T ss_dssp TTEEEEEE-ECSSSHHHHHHHHHHHHHHHTTCEEEEEEECS--SCCCCHHHHHHHST--TCSEEEEEECCTTSSSCHHHH
T ss_pred ccceeeEE-ecccChHHHHHHHHHHHHHhcCCceEEEEecc--CCCCCHHHHHHHHH--hCCeEEEEeCCcCCcCCHHHH
Confidence 35899998 466775 458999999999999876544443 34556777777764 56788886543 3455
Q ss_pred HHHHHHHhCCCCCCCeEEEEeCCCc
Q 002267 255 TIFSVAKSLGMTAGSYVWIATDWLP 279 (945)
Q Consensus 255 ~~~~~a~~~g~~~~~~~wi~~~~~~ 279 (945)
.++.........++....+++-+|.
T Consensus 340 ~~l~~l~~~~~~~K~~~~FGSyGWs 364 (410)
T 4dik_A 340 FTLLEIIDKANYEKPVLVFGVHGWA 364 (410)
T ss_dssp HHHHHHHHHCCCCCEEEEEEECCCC
T ss_pred HHHHHHHhcccCCCEEEEEECCCCC
Confidence 6677777666666555566666664
No 257
>1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} SCOP: c.78.2.1 c.78.2.1 PDB: 1b74_A*
Probab=61.76 E-value=33 Score=34.39 Aligned_cols=119 Identities=16% Similarity=0.099 Sum_probs=66.4
Q ss_pred HHHHHHHHhcCcEEEEccCChhHHHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHcCCe
Q 002267 105 TMEALQLMENEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWR 184 (945)
Q Consensus 105 ~~~a~~li~~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~ 184 (945)
.+.+..|.+.++.+|+-+-.+..+..+..+-+..++|+|... -.++...++..+-+
T Consensus 52 ~~~~~~L~~~g~d~iviaCnTa~~~~~~~lr~~~~iPvigi~------------------------e~~~~~A~~~~~~~ 107 (254)
T 1b73_A 52 LECAGFLKDKGVDIIVVACNTASAYALERLKKEINVPVFGVI------------------------EPGVKEALKKSRNK 107 (254)
T ss_dssp HHHHHHHHTTTCSEEEECCHHHHTTSHHHHHHHSSSCEEESH------------------------HHHHHHHHHHCSSC
T ss_pred HHHHHHHHHCCCCEEEEeCchhhHHHHHHHHHhCCCCEEeee------------------------HHHHHHHHHccCCC
Confidence 344445555689888876555543445666677789998620 01222223445678
Q ss_pred EEEEEEEeCCcccchHHHHHHHHhhcCcEEEEeec--CCCCC-----C----hHHHHHHHHhhccCCceEEEEEcChh
Q 002267 185 EVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAP--FSPGA-----S----RSAINSLLVGANLMESRVFVVHVNPD 251 (945)
Q Consensus 185 ~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~--~~~~~-----~----~~d~~~~l~~l~~~~~~vivl~~~~~ 251 (945)
+|+++.+....-.. ..++.+++.|+++..... +-... + ...+...++++.+. +|+||+.|..-
T Consensus 108 rigVlaT~~T~~~~---~y~~~l~~~g~~v~~~~~~~~v~~ie~g~~~~~~~~~~l~~~~~~l~~~-~d~IILGCT~~ 181 (254)
T 1b73_A 108 KIGVIGTPATVKSG---AYQRKLEEGGADVFAKACPLFAPLAEEGLLEGEITRKVVEHYLKEFKGK-IDTLILGCTHY 181 (254)
T ss_dssp EEEEEECHHHHHHC---HHHHHHHTTSCEEEEEECCCCTTTSCGGGGSGGGHHHHHHHHSTTTTTT-CSEEEECCCCT
T ss_pred EEEEEEChHHhhhH---HHHHHHHcCCCEEEecCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHhc-CCEEEECccCh
Confidence 99999865332222 234555677887753211 11111 1 12344555666555 99999987543
No 258
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=61.58 E-value=17 Score=37.84 Aligned_cols=79 Identities=11% Similarity=-0.020 Sum_probs=58.5
Q ss_pred eEEEEEEEe--CCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcCh-hhHHHHHHHH
Q 002267 184 REVIAIFVD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNP-DTGLTIFSVA 260 (945)
Q Consensus 184 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~-~~~~~~~~~a 260 (945)
++|+++..+ ++|.......+.+++++.|.++..... ..+...-...++.+...++|.||+.... ......++++
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~i~~~~~~~vdgiIi~~~~~~~~~~~~~~~ 80 (330)
T 3uug_A 4 GSVGIAMPTKSSARWIDDGNNIVKQLQEAGYKTDLQYA---DDDIPNQLSQIENMVTKGVKVLVIASIDGTTLSDVLKQA 80 (330)
T ss_dssp CEEEEEECCSSSTHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHHTCSEEEECCSSGGGGHHHHHHH
T ss_pred cEEEEEeCCCcchHHHHHHHHHHHHHHHcCCEEEEeeC---CCCHHHHHHHHHHHHHcCCCEEEEEcCCchhHHHHHHHH
Confidence 678888865 678888899999999999998775542 1344555567777777789999987543 3456778888
Q ss_pred HhCCC
Q 002267 261 KSLGM 265 (945)
Q Consensus 261 ~~~g~ 265 (945)
.+.|+
T Consensus 81 ~~~gi 85 (330)
T 3uug_A 81 GEQGI 85 (330)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 88775
No 259
>2rin_A Putative glycine betaine-binding ABC transporter protein; type II binding protein, aromatic BOX, acetylcholine, protein binding; HET: ACH; 1.80A {Rhizobium meliloti} PDB: 2rej_A 2rf1_A 2reg_A* 3hcq_A
Probab=61.09 E-value=15 Score=37.94 Aligned_cols=64 Identities=11% Similarity=0.158 Sum_probs=37.9
Q ss_pred CCCChHHhhc-----CCCCeEEeeCchHHHH----HH-HhhccccccceecCCHH----HHHHHHhcCCCCCceeEEecc
Q 002267 701 QIEGIDSLIS-----STEPIGVQDGSFAWNY----LV-DELKIAESRLVKLKNME----EYSIALARGPKGGGVAAIVDE 766 (945)
Q Consensus 701 ~i~~~~dL~~-----~~~~v~~~~~s~~~~~----l~-~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~g~~~a~~~~ 766 (945)
.|+|++||.+ .|..+++..|+..... ++ +.+++...+++. .+.. +...++.+ |+++++..-
T Consensus 104 ~I~si~DLk~~~~~~~gk~~g~~~G~~~~~~~~~~l~~~~yGL~d~~~v~-~~~~~~~a~~~~A~~~----g~~~v~~~w 178 (298)
T 2rin_A 104 GIKDFKDIAAHKDELDGKIYGIEPGNDGNRLIIDMVEKGTFDLKGFEVVE-SSEQGMLAQVARAEKS----GDPIVFLGW 178 (298)
T ss_dssp TCCBGGGSGGGHHHHTSEEECCSTTCHHHHHHHHHHHHTGGGCTTCEEEC-CCHHHHHHHHHHHHHT----TCCCEEEEE
T ss_pred CCCCHHHHHHHHHHcCCeEECCCCChHHHHHHHHHhhhhcCCCCCceecc-CCHHHHHHHHHHHHHC----CCCEEEEEe
Confidence 6889999863 2667788777754332 33 245553233333 2322 23456666 899988777
Q ss_pred hhh
Q 002267 767 LPY 769 (945)
Q Consensus 767 ~~~ 769 (945)
.+.
T Consensus 179 ~p~ 181 (298)
T 2rin_A 179 EPH 181 (298)
T ss_dssp ESS
T ss_pred ccC
Confidence 665
No 260
>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus}
Probab=60.83 E-value=37 Score=34.67 Aligned_cols=39 Identities=15% Similarity=0.194 Sum_probs=26.3
Q ss_pred HHHHHHHhcCcEEEEccCChhHHHHHHHhhcccCccEEe
Q 002267 106 MEALQLMENEVVAAIGPQSSGIAHVISHVVNELNVPLLS 144 (945)
Q Consensus 106 ~~a~~li~~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is 144 (945)
+.+..|.+.++.+|+=+-.+..+..+..+-+..++|+|.
T Consensus 75 ~~~~~L~~~g~d~IVIaCNTas~~~l~~lr~~~~iPVig 113 (286)
T 2jfq_A 75 EIARKLMEFDIKMLVIACNTATAVALEYLQKTLSISVIG 113 (286)
T ss_dssp HHHHHHTTSCCSEEEECCHHHHHHHHHHHHHHCSSEEEE
T ss_pred HHHHHHHHCCCCEEEEeCCchhHHHHHHHHHhCCCCEEe
Confidence 344445455898888765555544566666778999997
No 261
>2pju_A Propionate catabolism operon regulatory protein; structural genomics, PRPR, transcriptional regulation, PSI- 2, protein structure initiative; 2.10A {Escherichia coli} SCOP: c.92.3.1
Probab=60.67 E-value=46 Score=32.51 Aligned_cols=136 Identities=12% Similarity=0.102 Sum_probs=83.6
Q ss_pred EEEEEecCCCChHHHHHHHHHHHhc-CcEEEEccCChhHHHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChh
Q 002267 90 LNFVIRDTNCSGFVGTMEALQLMEN-EVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDY 168 (945)
Q Consensus 90 l~l~~~D~~~~~~~a~~~a~~li~~-~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~ 168 (945)
.++.+.| ++-..++..+.+++++ ++.+||.-. +++..+. +..++|+|... .+..
T Consensus 39 ~~I~vi~--~~le~av~~a~~~~~~~~~dVIISRG--gta~~Lr---~~~~iPVV~I~------------------vs~~ 93 (225)
T 2pju_A 39 ANITPIQ--LGFEKAVTYIRKKLANERCDAIIAAG--SNGAYLK---SRLSVPVILIK------------------PSGY 93 (225)
T ss_dssp CEEEEEC--CCHHHHHHHHHHHTTTSCCSEEEEEH--HHHHHHH---TTCSSCEEEEC------------------CCHH
T ss_pred ceEEEec--CcHHHHHHHHHHHHhcCCCeEEEeCC--hHHHHHH---hhCCCCEEEec------------------CCHH
Confidence 3344444 3456788888887775 698999632 3333222 44679999631 2333
Q ss_pred HHHHHHHHHHHHcCCeEEEEEEEeCCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEc
Q 002267 169 YQMHAVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHV 248 (945)
Q Consensus 169 ~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~ 248 (945)
....++...- .++ ++|++|.-.+. -..++.+.+.+ |+++... .+ .+.++....++++++.+.++||-.+
T Consensus 94 Dil~aL~~a~-~~~-~kIavVg~~~~--~~~~~~i~~ll---~~~i~~~-~~---~~~ee~~~~i~~l~~~G~~vVVG~~ 162 (225)
T 2pju_A 94 DVLQFLAKAG-KLT-SSIGVVTYQET--IPALVAFQKTF---NLRLDQR-SY---ITEEDARGQINELKANGTEAVVGAG 162 (225)
T ss_dssp HHHHHHHHTT-CTT-SCEEEEEESSC--CHHHHHHHHHH---TCCEEEE-EE---SSHHHHHHHHHHHHHTTCCEEEESH
T ss_pred HHHHHHHHHH-hhC-CcEEEEeCchh--hhHHHHHHHHh---CCceEEE-Ee---CCHHHHHHHHHHHHHCCCCEEECCH
Confidence 4455555543 344 58999875443 12345555544 4444432 23 3678999999999999999988743
Q ss_pred ChhhHHHHHHHHHhCCCCC
Q 002267 249 NPDTGLTIFSVAKSLGMTA 267 (945)
Q Consensus 249 ~~~~~~~~~~~a~~~g~~~ 267 (945)
. ..+.|++.|+.+
T Consensus 163 ~------~~~~A~~~Gl~~ 175 (225)
T 2pju_A 163 L------ITDLAEEAGMTG 175 (225)
T ss_dssp H------HHHHHHHTTSEE
T ss_pred H------HHHHHHHcCCcE
Confidence 2 355688888754
No 262
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis}
Probab=60.65 E-value=28 Score=35.53 Aligned_cols=55 Identities=13% Similarity=-0.083 Sum_probs=36.8
Q ss_pred CccEEEEEcCCCCCCCCHHHHHHHHHcCcccEEEecEEEecCcceeEEecccccccceEEEEEccC
Q 002267 528 PVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDITIVTNRTKLVDFTQPYMESGLVVVAPVQK 593 (945)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~~~~t~~r~~~~dfs~p~~~~~~~~vv~~~~ 593 (945)
.+.+++.. ++...+++.|.+|++|+++...... ...+. ..|+....+++++++..
T Consensus 119 ~v~i~~~~-------~~~~~~~~~l~~g~~D~~i~~~~~~---~~~l~-~~~l~~~~~~~v~~~~~ 173 (303)
T 3isp_A 119 DVLLDVRI-------EDQDHSARLLREGVAMGAVTTERNP---VPGCR-VHPLGEMRYLPVASRPF 173 (303)
T ss_dssp SEEEEEEE-------CCHHHHHHHHHTTSCSEEEESCCSC---CTTEE-EEEEEEEEEEEEECHHH
T ss_pred cceEEEEe-------cChHHHHHHHHcCcceEEEecCCCC---CCCeE-EEEccceeEEEEecchH
Confidence 34466654 5678899999999999988633211 12222 46777788888887654
No 263
>4edp_A ABC transporter, substrate-binding protein; clostridium PERF ATCC 13124, center for structural genomics of infectious DI csgid; 1.85A {Clostridium perfringens}
Probab=60.61 E-value=67 Score=33.38 Aligned_cols=82 Identities=10% Similarity=-0.100 Sum_probs=52.6
Q ss_pred cCCHHHHHHHHhcCCCCCceeEEecchhhHHHHhccCCccEEEeCc--cccccceEEEecCCCcchHHHHHHHHhccccc
Q 002267 741 LKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVGQ--EFTKSGWGFAFQRDSPLAIDLSTAILQLSENG 818 (945)
Q Consensus 741 ~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~k~spl~~~i~~~i~~l~e~G 818 (945)
..+..+..+.+.+ |++++.+.....+..+... ..++.++-+ -......+++++++++-.+.--+.|.-|.+..
T Consensus 216 ~~~~~~~~~~f~~----G~~a~~~~~~~~~~~~~~~-~~~~~~~~P~~g~~~~~~~~~i~~~s~~~~~A~~fi~~l~s~e 290 (351)
T 4edp_A 216 YSKSSDLANMFSN----GEIVAAVASDFAFGTISKA-KPEVINVIPESGTYLNFNTININKNSKNKDLAYEFINYALSKE 290 (351)
T ss_dssp ECCHHHHHHHHHT----TSCSEEEEEHHHHHHHHHH-CTTCEEECCTTCCBEEEEEEEEBTTCSCHHHHHHHHHHHTSHH
T ss_pred cCChHHHHHHHHc----CCEEEEecCcHHHHHHHhc-CCCeeeeCCCCCcccceeeEEEECCCCCHHHHHHHHHHhcCHH
Confidence 4567888899998 8999888766555554444 333333321 11223457899999998777777777776655
Q ss_pred cHHHHHHHh
Q 002267 819 DLQKIHNKW 827 (945)
Q Consensus 819 ~~~~i~~~w 827 (945)
....+.+..
T Consensus 291 ~q~~~~~~~ 299 (351)
T 4edp_A 291 VQEKTAKAL 299 (351)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 455554443
No 264
>1jq5_A Glycerol dehydrogenase; oxidoreductase, NAD, glycerol metabolism; HET: NAD; 1.70A {Geobacillus stearothermophilus} SCOP: e.22.1.2 PDB: 1jpu_A* 1jqa_A*
Probab=60.15 E-value=13 Score=39.80 Aligned_cols=82 Identities=16% Similarity=0.102 Sum_probs=58.4
Q ss_pred HHHHHHHcCCeEEEEEEEeCCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcC--hh
Q 002267 174 VADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN--PD 251 (945)
Q Consensus 174 i~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~--~~ 251 (945)
+.++++.+| +++.+|++...+. ...+.+.+.|++.|+++.+ ..+....+.+.+...++.+++.++|+||-.+. .-
T Consensus 23 l~~~l~~~g-~~~livtd~~~~~-~~~~~v~~~L~~~g~~~~~-~~~~ge~~~~~v~~~~~~~~~~~~d~IIavGGGsv~ 99 (370)
T 1jq5_A 23 IANYLEGIG-NKTVVIADEIVWK-IAGHTIVNELKKGNIAAEE-VVFSGEASRNEVERIANIARKAEAAIVIGVGGGKTL 99 (370)
T ss_dssp HHHHHTTTC-SEEEEEECHHHHH-HTHHHHHHHHHTTTCEEEE-EECCSSCBHHHHHHHHHHHHHTTCSEEEEEESHHHH
T ss_pred HHHHHHHcC-CeEEEEEChHHHH-HHHHHHHHHHHHcCCeEEE-EeeCCCCCHHHHHHHHHHHHhcCCCEEEEeCChHHH
Confidence 556677778 8998888654433 4678889999999988753 23443345567888888888889999997654 44
Q ss_pred hHHHHHH
Q 002267 252 TGLTIFS 258 (945)
Q Consensus 252 ~~~~~~~ 258 (945)
++.+++.
T Consensus 100 D~aK~iA 106 (370)
T 1jq5_A 100 DTAKAVA 106 (370)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666665
No 265
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=59.77 E-value=15 Score=37.77 Aligned_cols=87 Identities=11% Similarity=-0.044 Sum_probs=54.8
Q ss_pred HHHHHHcCCeEEEEEEEe--CCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcChhh
Q 002267 175 ADLVEYYGWREVIAIFVD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDT 252 (945)
Q Consensus 175 ~~~l~~~~w~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~~~ 252 (945)
|.-++.-.-+.|++|..+ ++|.......+.+++++.|..+.....- .+.......++.+...+.|.||+......
T Consensus 7 Ar~L~~~~s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~l~~~~vdgiI~~~~~~~ 83 (303)
T 3kke_A 7 ARALRHSRSGTIGLIVPDVNNAVFADMFSGVQMAASGHSTDVLLGQID---APPRGTQQLSRLVSEGRVDGVLLQRREDF 83 (303)
T ss_dssp ----------CEEEEESCTTSTTHHHHHHHHHHHHHHTTCCEEEEECC---STTHHHHHHHHHHHSCSSSEEEECCCTTC
T ss_pred HHHHhhCCCCEEEEEeCCCcChHHHHHHHHHHHHHHHCCCEEEEEeCC---CChHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence 333444455678888864 6677888999999999999987654322 23444567788888889999999754333
Q ss_pred HHHHHHHHHhCCC
Q 002267 253 GLTIFSVAKSLGM 265 (945)
Q Consensus 253 ~~~~~~~a~~~g~ 265 (945)
....+..+.+ |+
T Consensus 84 ~~~~~~~l~~-~i 95 (303)
T 3kke_A 84 DDDMLAAVLE-GV 95 (303)
T ss_dssp CHHHHHHHHT-TS
T ss_pred cHHHHHHHhC-CC
Confidence 2225666666 64
No 266
>3cfx_A UPF0100 protein MA_0280; ABC transporter, binding protein, molybdate, tungstate, LIGA unknown function, transport protein; 1.60A {Methanosarcina acetivorans}
Probab=59.75 E-value=48 Score=33.88 Aligned_cols=71 Identities=7% Similarity=-0.011 Sum_probs=44.7
Q ss_pred eHHHHHHHHHh-CCCCccEEEEEcCCCCCCCCHHHHHHHHHc-Cc-ccEEEecEEE--e-cCcceeEEecccccccceEE
Q 002267 514 CIDVFEAAVNL-LPYPVPHNYIMYGNGKRNPIYNDIVQQVAL-NK-FDAAVGDITI--V-TNRTKLVDFTQPYMESGLVV 587 (945)
Q Consensus 514 ~~dll~~l~~~-l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~-g~-~D~~~~~~~~--t-~~r~~~~dfs~p~~~~~~~~ 587 (945)
.-++++.+.++ -|.++++.+ ++-..++.+|.. |. +|+.+..-.. . ......++...||....+++
T Consensus 19 ~~~l~~~F~~~~~gi~V~~~~---------~~s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~~~~~l~i 89 (296)
T 3cfx_A 19 FEELEAEFEAQHPGVDVQREA---------AGSAQSVRKITELGKKADVLASADYALIPSLMVPEYADWYAAFARNQMIL 89 (296)
T ss_dssp HHHHHHHHHHHSTTCEEEEEE---------CCHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCEEEEEECCEEE
T ss_pred HHHHHHHHHHHCCCceEEEEe---------CchHHHHHHHHhCCCCCcEEEECChhhHHHHHhCCCccceeeeEeeeEEE
Confidence 34678888777 487755433 556788999988 75 8988753211 1 01122234556777888888
Q ss_pred EEEccC
Q 002267 588 VAPVQK 593 (945)
Q Consensus 588 vv~~~~ 593 (945)
++++..
T Consensus 90 ~~~~~~ 95 (296)
T 3cfx_A 90 AYTNES 95 (296)
T ss_dssp EECTTS
T ss_pred EEeCCC
Confidence 887664
No 267
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=59.66 E-value=23 Score=37.16 Aligned_cols=84 Identities=6% Similarity=-0.032 Sum_probs=55.8
Q ss_pred HHHcCCeEEEEEEEe--CCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcChhhHHH
Q 002267 178 VEYYGWREVIAIFVD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLT 255 (945)
Q Consensus 178 l~~~~w~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~~~~~~ 255 (945)
++.-.-+.|+++..+ ++|.....+.+.+++++.|..+..... . .+...-...++.+...++|.||+....... .
T Consensus 57 l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~--~~~~~~~~~~~~l~~~~vdGiIi~~~~~~~-~ 132 (339)
T 3h5o_A 57 LASAKSRTVLVLIPSLANTVFLETLTGIETVLDAAGYQMLIGNS-H--YDAGQELQLLRAYLQHRPDGVLITGLSHAE-P 132 (339)
T ss_dssp ------CEEEEEESCSTTCTTHHHHHHHHHHHHHTTCEEEEEEC-T--TCHHHHHHHHHHHHTTCCSEEEEECSCCCT-T
T ss_pred hhcCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC-C--CChHHHHHHHHHHHcCCCCEEEEeCCCCCH-H
Confidence 333445689988864 678888899999999999998765332 1 344555677888888899999987543222 4
Q ss_pred HHHHHHhCCC
Q 002267 256 IFSVAKSLGM 265 (945)
Q Consensus 256 ~~~~a~~~g~ 265 (945)
.++.+.+.|+
T Consensus 133 ~~~~l~~~~i 142 (339)
T 3h5o_A 133 FERILSQHAL 142 (339)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHhcCCC
Confidence 5666666665
No 268
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=59.61 E-value=57 Score=25.96 Aligned_cols=64 Identities=14% Similarity=0.169 Sum_probs=33.4
Q ss_pred cCChhHHHHHHHHHHHHcCCeEEEEEEEeCCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhh
Q 002267 164 TQSDYYQMHAVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGA 236 (945)
Q Consensus 164 ~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l 236 (945)
.-.|...++....+++.+|..-..+||+.| +.-++.+....+.+|.+|... .+.+|+..-|.++
T Consensus 57 vvddkewaekairfvkslgaqvliiiydqd---qnrleefsrevrrrgfevrtv------tspddfkkslerl 120 (134)
T 2l69_A 57 VVDDKEWAEKAIRFVKSLGAQVLIIIYDQD---QNRLEEFSREVRRRGFEVRTV------TSPDDFKKSLERL 120 (134)
T ss_dssp ECSSHHHHHHHHHHHHHHCCCCEEEEECSC---HHHHHHHHHHHHHTTCCEEEE------SSHHHHHHHHHHH
T ss_pred EEccHHHHHHHHHHHHhcCCeEEEEEEeCc---hhHHHHHHHHHHhcCceEEEe------cChHHHHHHHHHH
Confidence 334455555556666666665555555332 344555666666666655422 2345555444443
No 269
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Probab=58.95 E-value=40 Score=34.16 Aligned_cols=120 Identities=10% Similarity=0.074 Sum_probs=63.6
Q ss_pred HHHHHHHHHh-cCcEEEEccCChhHHHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHcC
Q 002267 104 GTMEALQLME-NEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYG 182 (945)
Q Consensus 104 a~~~a~~li~-~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~ 182 (945)
..+.+..|.+ .++.+|+=+-.+..+.++..+-+..++|+|... . .++...++.-+
T Consensus 54 ~~~~~~~L~~~~g~d~iViACNTas~~~l~~lr~~~~iPVigii--e----------------------pa~~~A~~~~~ 109 (272)
T 1zuw_A 54 TWELTNYLLENHHIKMLVIACNTATAIALDDIQRSVGIPVVGVI--Q----------------------PGARAAIKVTD 109 (272)
T ss_dssp HHHHHHHHHHHSCCSEEEECCHHHHHHHHHHHHHHCSSCEEESH--H----------------------HHHHHHHHHCS
T ss_pred HHHHHHHHHhhcCCCEEEEeCchhhHHHHHHHHHHCCCCEEccc--H----------------------HHHHHHHHhcC
Confidence 3445566667 789888876555555566667777899999631 0 11111223345
Q ss_pred CeEEEEEEEeCCcccchHHHHHHHHhhc--CcEEEEeec------CCCC-CC----hHHHHHHHHhhccCCceEEEEEcC
Q 002267 183 WREVIAIFVDDDYGRNGISVLGDALSKK--RAKISYKAP------FSPG-AS----RSAINSLLVGANLMESRVFVVHVN 249 (945)
Q Consensus 183 w~~v~ii~~d~~~g~~~~~~l~~~l~~~--g~~v~~~~~------~~~~-~~----~~d~~~~l~~l~~~~~~vivl~~~ 249 (945)
-++|+++.+....-.. .+++.+++. |++|..... +..+ .+ ...+...++.++..++|+||+.|.
T Consensus 110 ~~rIgVlaT~~T~~s~---~y~~~i~~~~~~~~v~~~~~~~~v~~ve~g~~~~~~~~~~l~~~l~~l~~~~~D~iVLGCT 186 (272)
T 1zuw_A 110 NQHIGVIGTENTIKSN---AYEEALLALNPDLKVENLACPLLVPFVESGKFLDQTADEIVKTSLYPLKDTSIDSLILGCT 186 (272)
T ss_dssp SSEEEEEECHHHHHTT---HHHHHHHHHCTTCEEEEEECTTHHHHHTSCCCCHHHHHHHHHHHHHHHHHSCCSEEEEEST
T ss_pred CCEEEEEEChhhhhhh---HHHHHHHHhCCCCEEEeccCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHhcCCCEEEECcc
Confidence 6788887754221111 133344433 555532111 0000 11 133445566666667888888765
Q ss_pred h
Q 002267 250 P 250 (945)
Q Consensus 250 ~ 250 (945)
.
T Consensus 187 h 187 (272)
T 1zuw_A 187 H 187 (272)
T ss_dssp T
T ss_pred C
Confidence 4
No 270
>3cfz_A UPF0100 protein MJ1186; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.70A {Methanocaldococcus jannaschii}
Probab=57.57 E-value=58 Score=33.15 Aligned_cols=71 Identities=10% Similarity=-0.048 Sum_probs=44.3
Q ss_pred eHHHHHHHHHh-CCCCccEEEEEcCCCCCCCCHHHHHHHHHc-Cc-ccEEEecEEEec---CcceeEEecccccccceEE
Q 002267 514 CIDVFEAAVNL-LPYPVPHNYIMYGNGKRNPIYNDIVQQVAL-NK-FDAAVGDITIVT---NRTKLVDFTQPYMESGLVV 587 (945)
Q Consensus 514 ~~dll~~l~~~-l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~-g~-~D~~~~~~~~t~---~r~~~~dfs~p~~~~~~~~ 587 (945)
.-++++.+.++ -|.++++.+ ++-..++.+|.. |. +|+.+..-.... .....++...||....+++
T Consensus 19 ~~~l~~~F~~~~~gi~V~~~~---------~~s~~l~~~i~~~g~~~Dv~~~a~~~~~~~l~~~gl~~~~~~~~~~~lvi 89 (292)
T 3cfz_A 19 FEEYEKMFEKEHPNVDVEREP---------AGSVACVRKIIDLGKKADILASADYSLIPQMMMPKYADWYVMFARNEIVL 89 (292)
T ss_dssp HHHHHHHHHHHCTTEEEEEEE---------ECHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCCEEEEECCEEE
T ss_pred HHHHHHHHHHHCCCceEEEEe---------CCHHHHHHHHHhcCCCCcEEEECChHHHHHHHhCCCccceeeeEeccEEE
Confidence 34677888777 476655433 456788999988 75 899875311101 1112234456777788888
Q ss_pred EEEccC
Q 002267 588 VAPVQK 593 (945)
Q Consensus 588 vv~~~~ 593 (945)
++++..
T Consensus 90 ~~~~~~ 95 (292)
T 3cfz_A 90 AYTDKS 95 (292)
T ss_dssp EECTTS
T ss_pred EEcCCC
Confidence 887664
No 271
>2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP- murnac-Ala, peptidoglycan biosynthesis, peptidoglycan synthesis; HET: GLU UMA; 1.9A {Escherichia coli}
Probab=57.57 E-value=31 Score=35.28 Aligned_cols=38 Identities=8% Similarity=0.161 Sum_probs=26.2
Q ss_pred HHHHHHh-cCcEEEEccCChhHHHHHHHhhcccCccEEe
Q 002267 107 EALQLME-NEVVAAIGPQSSGIAHVISHVVNELNVPLLS 144 (945)
Q Consensus 107 ~a~~li~-~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is 144 (945)
.+..+++ .++.+|+=+-.+..+.++..+-+..++|+|.
T Consensus 75 i~~~ll~~~g~d~IviaCNTas~~~l~~lr~~~~iPVig 113 (285)
T 2jfn_A 75 IVTAVQERYPLALAVVACNTASTVSLPALREKFDFPVVG 113 (285)
T ss_dssp HHHHHHHHSCCSEEEECCHHHHHHHHHHHHHHCSSCEEC
T ss_pred HHHHHHHhCCCCEEEEECccccHHHHHHHHHhCCCCEEe
Confidence 3344555 4888888765555545666777788999997
No 272
>3tmg_A Glycine betaine, L-proline ABC transporter, glycine/betaine/L-proline-binding protein...; ssgcid, structural genomics; 1.90A {Borrelia burgdorferi}
Probab=57.51 E-value=44 Score=33.98 Aligned_cols=41 Identities=17% Similarity=0.204 Sum_probs=30.0
Q ss_pred eHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHHHHHHHHHcCcccEEEec
Q 002267 514 CIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGD 563 (945)
Q Consensus 514 ~~dll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~ 563 (945)
...|+..+.+.+|+++++ .+ ++-.-+.+.|.+|++|+....
T Consensus 31 ~~~i~~~~Le~~G~~Ve~--~~-------~~~~~~~~AL~~G~iD~~~e~ 71 (280)
T 3tmg_A 31 ATNVLKVVFEKMGYNAEI--FS-------VTTSIMYQYLASGKIDGTVSS 71 (280)
T ss_dssp HHHHHHHHHHHTTEEEEE--EE-------CCHHHHHHHHHTTSSSEEEEE
T ss_pred HHHHHHHHHHHCCCceEE--EE-------CCcHHHHHHHHCCCCcEEEec
Confidence 346777777789987555 44 334678899999999998763
No 273
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=57.43 E-value=23 Score=36.25 Aligned_cols=86 Identities=7% Similarity=-0.035 Sum_probs=59.1
Q ss_pred cCCeEEEEEEEe---CCcccchHHHHHHHHhhc-CcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcChh-hHHH
Q 002267 181 YGWREVIAIFVD---DDYGRNGISVLGDALSKK-RAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPD-TGLT 255 (945)
Q Consensus 181 ~~w~~v~ii~~d---~~~g~~~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~~-~~~~ 255 (945)
-.-++|+++..+ +.|.......+++++++. |..+..........+.......++.+...++|.||+..... ....
T Consensus 6 ~~~~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~ 85 (304)
T 3gbv_A 6 NKKYTFACLLPKHLEGEYWTDVQKGIREAVTTYSDFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPTVPQYTKG 85 (304)
T ss_dssp -CCEEEEEEEECCCTTSHHHHHHHHHHHHHHHTGGGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCSSGGGTHH
T ss_pred CCcceEEEEecCCCCchHHHHHHHHHHHHHHHHHhCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCCChHHHHH
Confidence 345778888754 567778889999999988 76665543322113455566778888888999999876543 4566
Q ss_pred HHHHHHhCCCC
Q 002267 256 IFSVAKSLGMT 266 (945)
Q Consensus 256 ~~~~a~~~g~~ 266 (945)
.++.+.+.|+.
T Consensus 86 ~~~~~~~~~iP 96 (304)
T 3gbv_A 86 FTDALNELGIP 96 (304)
T ss_dssp HHHHHHHHTCC
T ss_pred HHHHHHHCCCe
Confidence 77778777753
No 274
>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL biogenesis/degradation, cell shape, benzyl purine, MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A*
Probab=56.81 E-value=34 Score=35.03 Aligned_cols=118 Identities=9% Similarity=0.027 Sum_probs=63.9
Q ss_pred HHHHHHHHhcCcEEEEccCChhHHHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHcCCe
Q 002267 105 TMEALQLMENEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWR 184 (945)
Q Consensus 105 ~~~a~~li~~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~ 184 (945)
.+.+..|.+.++.+|+=+-.+..+.++..+-+..++|+|... . .++...++..+-+
T Consensus 76 ~~~~~~L~~~g~d~IVIACNTas~~~l~~lr~~~~iPVigii--e----------------------pa~~~A~~~~~~~ 131 (290)
T 2vvt_A 76 WEMADFLLKKRIKMLVIACNTATAVALEEIKAALPIPVVGVI--L----------------------PGARAAVKVTKNN 131 (290)
T ss_dssp HHHHHHHHTTTCSEEEECCHHHHHHHHHHHHHHCSSCEEESS--H----------------------HHHHHHHHHCSSS
T ss_pred HHHHHHHHHCCCCEEEEeCcchhHHHHHHHHHhCCCCEEccc--H----------------------HHHHHHHHhcCCC
Confidence 344445555689888876555555566677778899999620 1 1111122334567
Q ss_pred EEEEEEEeCCcccchHHHHHHHHhhc--CcEEEEeecCCC-------C-CC----hHHHHHHHHhhccCCceEEEEEcCh
Q 002267 185 EVIAIFVDDDYGRNGISVLGDALSKK--RAKISYKAPFSP-------G-AS----RSAINSLLVGANLMESRVFVVHVNP 250 (945)
Q Consensus 185 ~v~ii~~d~~~g~~~~~~l~~~l~~~--g~~v~~~~~~~~-------~-~~----~~d~~~~l~~l~~~~~~vivl~~~~ 250 (945)
+|+++.+....-.. .+++.+++. +.+|... ..+. . .+ ...+...++.+.+.++|+||+.|..
T Consensus 132 rIgVLaT~~T~~s~---~y~~~l~~~~~~~~v~~~-~~~~lv~~ve~g~~~~~~~~~~l~~~l~~l~~~g~D~IVLGCTh 207 (290)
T 2vvt_A 132 KIGVIGTLGTIKSA---SYEIAIKSKAPAIEVTSL-ACPKFVPIVESNQYRSSVAKKIVAETLQALQLKGLDTLILGCTH 207 (290)
T ss_dssp EEEEEECHHHHHTT---HHHHHHHTTCTTSEEEEE-ECTTHHHHHHTTCTTSHHHHHHHHHHHGGGTTSCCSEEEECSTT
T ss_pred EEEEEeCcHhhhhH---HHHHHHHHhCCCCEEEec-cCHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhCCCCEEEECCcC
Confidence 88888754321111 244455554 4555422 1110 0 01 1235556666666678888887654
No 275
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=56.34 E-value=22 Score=36.38 Aligned_cols=80 Identities=10% Similarity=0.012 Sum_probs=54.9
Q ss_pred eEEEEEEE--eCCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcCh-hhHHHHHHHH
Q 002267 184 REVIAIFV--DDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNP-DTGLTIFSVA 260 (945)
Q Consensus 184 ~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~-~~~~~~~~~a 260 (945)
++|+++.. +++|.....+.+++++++.|+++.... +...+.......++++...++|.||+.... ......++.+
T Consensus 5 ~~Ig~i~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~ 82 (303)
T 3d02_A 5 KTVVNISKVDGMPWFNRMGEGVVQAGKEFNLNASQVG--PSSTDAPQQVKIIEDLIARKVDAITIVPNDANVLEPVFKKA 82 (303)
T ss_dssp EEEEEECSCSSCHHHHHHHHHHHHHHHHTTEEEEEEC--CSSSCHHHHHHHHHHHHHTTCSEEEECCSCHHHHHHHHHHH
T ss_pred eEEEEEeccCCChHHHHHHHHHHHHHHHcCCEEEEEC--CCCCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHH
Confidence 56888864 356778888999999999998876422 111344445567777777889999887543 3344567777
Q ss_pred HhCCC
Q 002267 261 KSLGM 265 (945)
Q Consensus 261 ~~~g~ 265 (945)
.+.|+
T Consensus 83 ~~~~i 87 (303)
T 3d02_A 83 RDAGI 87 (303)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 77664
No 276
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=56.33 E-value=28 Score=35.63 Aligned_cols=79 Identities=6% Similarity=0.038 Sum_probs=55.1
Q ss_pred eEEEEEEEe--CCcccchHHHHHHHHhhcCc-EEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcCh-hhHHHHHHH
Q 002267 184 REVIAIFVD--DDYGRNGISVLGDALSKKRA-KISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNP-DTGLTIFSV 259 (945)
Q Consensus 184 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~-~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~-~~~~~~~~~ 259 (945)
++|+++..+ ++|.......+++++++.|. ++..... ..+.......++.+...++|.||+.... ......+++
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~ 79 (309)
T 2fvy_A 3 TRIGVTIYKYDDNFMSVVRKAIEQDAKAAPDVQLLMNDS---QNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEK 79 (309)
T ss_dssp EEEEEEESCTTSHHHHHHHHHHHHHHHTCTTEEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECCSSGGGHHHHHHH
T ss_pred cEEEEEeccCCcHHHHHHHHHHHHHHHhcCCeEEEEecC---CCCHHHHHHHHHHHHHcCCCEEEEeCCCcchhHHHHHH
Confidence 578888753 56777888999999999997 7765422 1234445567777777889999987543 334567777
Q ss_pred HHhCCC
Q 002267 260 AKSLGM 265 (945)
Q Consensus 260 a~~~g~ 265 (945)
+.+.|+
T Consensus 80 ~~~~~i 85 (309)
T 2fvy_A 80 ARGQNV 85 (309)
T ss_dssp HHTTTC
T ss_pred HHHCCC
Confidence 777664
No 277
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=56.30 E-value=31 Score=35.05 Aligned_cols=84 Identities=4% Similarity=-0.145 Sum_probs=52.9
Q ss_pred HHHcCCeEEEEEEEe----CCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcChhhH
Q 002267 178 VEYYGWREVIAIFVD----DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTG 253 (945)
Q Consensus 178 l~~~~w~~v~ii~~d----~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~~~~ 253 (945)
++.-.-++|+++..+ ++|.......+.+++++.|.++..... ..+.......++.+...++|.||+.......
T Consensus 14 L~~~~~~~Ig~i~~~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~ 90 (296)
T 3brq_A 14 LSAKSTQTLGLVVTNTLYHGIYFSELLFHAARMAEEKGRQLLLADG---KHSAEEERQAIQYLLDLRCDAIMIYPRFLSV 90 (296)
T ss_dssp -----CCEEEEEECGGGCC--CHHHHHHHHHHHHHHTTCEEEEECC---TTSHHHHHHHHHHHHHTTCSEEEEECSSSCH
T ss_pred hhcCCCceEEEEeCCcccCCchHHHHHHHHHHHHHHCCCEEEEEeC---CCCHHHHHHHHHHHHhcCCCEEEEecCCCCh
Confidence 333345688988754 467778889999999999998765321 1344445567777777889999887543222
Q ss_pred HHHHHHHHh-CCC
Q 002267 254 LTIFSVAKS-LGM 265 (945)
Q Consensus 254 ~~~~~~a~~-~g~ 265 (945)
..++.+.+ .|.
T Consensus 91 -~~~~~l~~~~~i 102 (296)
T 3brq_A 91 -DEIDDIIDAHSQ 102 (296)
T ss_dssp -HHHHHHHHTCSS
T ss_pred -HHHHHHHhcCCC
Confidence 34566666 564
No 278
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=56.17 E-value=14 Score=38.40 Aligned_cols=80 Identities=15% Similarity=0.060 Sum_probs=55.6
Q ss_pred eEEEEEEE--eCCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcC-hhhHHHHHHHH
Q 002267 184 REVIAIFV--DDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN-PDTGLTIFSVA 260 (945)
Q Consensus 184 ~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~-~~~~~~~~~~a 260 (945)
++|+++.. +++|.....+.+++++++.|+++.... +...+...-...++.+...++|+||+... .......++.+
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~--~~~~d~~~q~~~i~~li~~~vdgiii~~~~~~~~~~~~~~a 81 (316)
T 1tjy_A 4 ERIAFIPKLVGVGFFTSGGNGAQEAGKALGIDVTYDG--PTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRA 81 (316)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHHHHHHTCEEEECC--CSSCCHHHHHHHHHHHHHTTCSEEEECCSSSSTTHHHHHHH
T ss_pred CEEEEEeCCCCChHHHHHHHHHHHHHHHhCCEEEEEC--CCCCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHH
Confidence 57888864 356777888899999999998876431 21234444556777777789999988754 33345677888
Q ss_pred HhCCC
Q 002267 261 KSLGM 265 (945)
Q Consensus 261 ~~~g~ 265 (945)
++.|+
T Consensus 82 ~~~gi 86 (316)
T 1tjy_A 82 MQRGV 86 (316)
T ss_dssp HHTTC
T ss_pred HHCcC
Confidence 87764
No 279
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=55.87 E-value=25 Score=35.70 Aligned_cols=79 Identities=5% Similarity=-0.023 Sum_probs=55.0
Q ss_pred eEEEEEEEe--CCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcCh-hhHHHHHHHH
Q 002267 184 REVIAIFVD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNP-DTGLTIFSVA 260 (945)
Q Consensus 184 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~-~~~~~~~~~a 260 (945)
++|+++..+ ++|.......+++++++.|.++..... ..+.......++.+...++|.||+.... ......++.+
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~~ 79 (290)
T 2fn9_A 3 GKMAIVISTLNNPWFVVLAETAKQRAEQLGYEATIFDS---QNDTAKESAHFDAIIAAGYDAIIFNPTDADGSIANVKRA 79 (290)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECCSCTTTTHHHHHHH
T ss_pred eEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEeCC---CCCHHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHH
Confidence 468888754 677788899999999999998765432 1234444566777777889999887533 3334566777
Q ss_pred HhCCC
Q 002267 261 KSLGM 265 (945)
Q Consensus 261 ~~~g~ 265 (945)
.+.|+
T Consensus 80 ~~~~i 84 (290)
T 2fn9_A 80 KEAGI 84 (290)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 77664
No 280
>1h3d_A ATP-phosphoribosyltransferase; hisitidine biosynthesis, glycosyltransferase; HET: AMP TLA; 2.7A {Escherichia coli} SCOP: c.94.1.1 d.58.5.3 PDB: 1q1k_A*
Probab=55.47 E-value=38 Score=34.61 Aligned_cols=101 Identities=16% Similarity=0.070 Sum_probs=63.5
Q ss_pred CCCChHHhhcCCCCeEEeeCchHHHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceeEEecchhhHHHHhccCCcc
Q 002267 701 QIEGIDSLISSTEPIGVQDGSFAWNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTNCE 780 (945)
Q Consensus 701 ~i~~~~dL~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~~ 780 (945)
.++++++|. +++|+...-.....||. +.+++ .+++.....-|..-.+ |-.|++++-........++ +
T Consensus 115 ~~~~~~~l~--g~RIATkyp~l~~~yf~-~~gi~-~~ii~l~GsvE~aP~~------GlADaIvDivsTG~TLraN---g 181 (299)
T 1h3d_A 115 AWDGPLSLN--GKRIATSYPHLLKRYLD-QKGIS-FKSCLLNGSVEVAPRA------GLADAICDLVSTGATLEAN---G 181 (299)
T ss_dssp CCCCGGGGT--TCEEEESCHHHHHHHHH-HHTCC-CEEEECSSCTTHHHHT------TSCSEEEEEESSCHHHHHT---T
T ss_pred CCCChHHhC--CCEEEeCcHHHHHHHHH-HcCCc-EEEEECCCceeeccCC------CccceEEecccCHHHHHHC---C
Confidence 345567774 78898887778888885 45554 4555555555555444 6788998877766666555 5
Q ss_pred EEEeCccccccceEEEecCCC--cch-HHHHHHHHhcc
Q 002267 781 FRTVGQEFTKSGWGFAFQRDS--PLA-IDLSTAILQLS 815 (945)
Q Consensus 781 ~~~~~~~~~~~~~~~~~~k~s--pl~-~~i~~~i~~l~ 815 (945)
|.+++. +....-.+...+.+ +.+ +.++..+.+|.
T Consensus 182 L~~ie~-I~~SsA~LI~n~~s~~~~k~~~i~~l~~rl~ 218 (299)
T 1h3d_A 182 LREVEV-IYRSKACLIQRDGEMEESKQQLIDKLLTRIQ 218 (299)
T ss_dssp EEEEEE-EEEECEEEEEESSCCCHHHHHHHHHHHHHHH
T ss_pred CEEeEE-EEeeEEEEEEeccccChhHHHHHHHHHHHHH
Confidence 666644 44445556666765 222 45666666664
No 281
>3ojc_A Putative aspartate/glutamate racemase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 1.75A {Yersinia pestis}
Probab=54.11 E-value=14 Score=36.63 Aligned_cols=80 Identities=14% Similarity=0.118 Sum_probs=45.2
Q ss_pred HHHHHHhcCcEEEEccCChhHHHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHcCCeEE
Q 002267 107 EALQLMENEVVAAIGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREV 186 (945)
Q Consensus 107 ~a~~li~~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v 186 (945)
.+..|.+.++.+|+=+-.+... .+..+-+..++|+|+. .++.++-+...+-++|
T Consensus 68 ~~~~L~~~g~~~iviaCNTa~~-~~~~l~~~~~iPvi~i-------------------------~~~~~~~a~~~~~~rV 121 (231)
T 3ojc_A 68 AAISLKHAGAEVIVVCTNTMHK-VADDIEAACGLPLLHI-------------------------ADATAVQIKQQGIDKI 121 (231)
T ss_dssp HHHHHHHHTCCEEEECSSGGGG-GHHHHHHHHCSCBCCH-------------------------HHHHHHHHHHTTCCEE
T ss_pred HHHHHHhcCCCEEEEeCCchHH-HHHHHHHhCCCCEecc-------------------------HHHHHHHHHHcCCCEE
Confidence 3444445588888876555443 3345556678888852 2344444444567899
Q ss_pred EEEEEeCCcccchHHHHHHHHhhc-CcEEE
Q 002267 187 IAIFVDDDYGRNGISVLGDALSKK-RAKIS 215 (945)
Q Consensus 187 ~ii~~d~~~g~~~~~~l~~~l~~~-g~~v~ 215 (945)
+++.+....-.+ .+++.+++. |+++.
T Consensus 122 gvLaT~~T~~s~---~y~~~l~~~~g~~v~ 148 (231)
T 3ojc_A 122 GLLGTRYTMEQG---FYRGRLTEKHGIEVI 148 (231)
T ss_dssp EEESCHHHHHST---TTHHHHHHTTCCEEE
T ss_pred EEEcCHHHhhch---HHHHHHHhcCCCEEE
Confidence 998754321111 224455555 87764
No 282
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=54.06 E-value=28 Score=36.73 Aligned_cols=84 Identities=10% Similarity=-0.036 Sum_probs=55.2
Q ss_pred HHHcCCeEEEEEEEe--CCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcChhhHHH
Q 002267 178 VEYYGWREVIAIFVD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLT 255 (945)
Q Consensus 178 l~~~~w~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~~~~~~ 255 (945)
++.-.-+.|+++..+ ++|.......+.+++++.|..+.....- .+...-...++.+...++|.||+....... .
T Consensus 65 l~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~l~~~~vdGiI~~~~~~~~-~ 140 (355)
T 3e3m_A 65 LTTKRSGFVGLLLPSLNNLHFAQTAQSLTDVLEQGGLQLLLGYTA---YSPEREEQLVETMLRRRPEAMVLSYDGHTE-Q 140 (355)
T ss_dssp ------CEEEEEESCSBCHHHHHHHHHHHHHHHHTTCEEEEEECT---TCHHHHHHHHHHHHHTCCSEEEEECSCCCH-H
T ss_pred hhcCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCC---CChHHHHHHHHHHHhCCCCEEEEeCCCCCH-H
Confidence 433445679988764 5677778899999999999988654221 244445567777778899999987544332 5
Q ss_pred HHHHHHhCCC
Q 002267 256 IFSVAKSLGM 265 (945)
Q Consensus 256 ~~~~a~~~g~ 265 (945)
.++.+.+.|+
T Consensus 141 ~~~~l~~~~i 150 (355)
T 3e3m_A 141 TIRLLQRASI 150 (355)
T ss_dssp HHHHHHHCCS
T ss_pred HHHHHHhCCC
Confidence 5667777665
No 283
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=53.79 E-value=14 Score=37.90 Aligned_cols=85 Identities=5% Similarity=-0.071 Sum_probs=54.6
Q ss_pred HHHcCCeEEEEEEEe--CCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcChhhHHH
Q 002267 178 VEYYGWREVIAIFVD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLT 255 (945)
Q Consensus 178 l~~~~w~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~~~~~~ 255 (945)
++.-.-+.|+++..+ ++|.....+.+.+++++.|.++..... . .+.......++.+...++|.||+.........
T Consensus 15 L~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~--~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~ 91 (293)
T 2iks_A 15 LRAGRTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACS-E--DQPDNEMRCIEHLLQRQVDAIIVSTSLPPEHP 91 (293)
T ss_dssp ---CCCCEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEEC-T--TCHHHHHHHHHHHHHTTCSEEEECCSSCTTCH
T ss_pred hhcCCCcEEEEEeCCCcCcHHHHHHHHHHHHHHHCCCEEEEEcC-C--CCHHHHHHHHHHHHHcCCCEEEEeCCCCCcHH
Confidence 444455689988854 667778889999999999998775432 1 23444456777777788999988754322223
Q ss_pred HHHHHHhCCC
Q 002267 256 IFSVAKSLGM 265 (945)
Q Consensus 256 ~~~~a~~~g~ 265 (945)
+++.+.+.|+
T Consensus 92 ~~~~~~~~~i 101 (293)
T 2iks_A 92 FYQRWANDPF 101 (293)
T ss_dssp HHHTTTTSSS
T ss_pred HHHHHHhCCC
Confidence 4555555453
No 284
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=53.49 E-value=15 Score=38.00 Aligned_cols=54 Identities=13% Similarity=0.178 Sum_probs=43.1
Q ss_pred chhhHHHHHHHHhhccc--cCcccccchh------hHHHHHHHHHHhhhhhhhhhhheeeee
Q 002267 642 QLVTIFWFSFSTMFFSH--RENTVSSLGR------VVLIVWLFVVLIINSSYTASLTSILTV 695 (945)
Q Consensus 642 ~~~~~~~~~~~~l~~~~--~~~p~s~~~R------~~~~~w~~~~lil~~~Yta~L~s~Lt~ 695 (945)
++.+++|+++.++...+ .-.|.+..+| ++.++|.++++.+.++-.+.+.+.+..
T Consensus 224 ~~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~ 285 (309)
T 3um7_A 224 SKLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRV 285 (309)
T ss_dssp CHHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999998665 4467777776 488999999999988888877776554
No 285
>2de3_A Dibenzothiophene desulfurization enzyme B; alpha-beta, hydrolase; HET: OBP; 1.60A {Rhodococcus SP} PDB: 2de4_A* 2de2_A
Probab=53.26 E-value=39 Score=35.97 Aligned_cols=121 Identities=21% Similarity=0.207 Sum_probs=68.4
Q ss_pred cCCCCChHHhhcCCCCeEEee-------Cch-----------------------HHHHHHHhhcccc--ccceecCCHH-
Q 002267 699 TSQIEGIDSLISSTEPIGVQD-------GSF-----------------------AWNYLVDELKIAE--SRLVKLKNME- 745 (945)
Q Consensus 699 ~~~i~~~~dL~~~~~~v~~~~-------~s~-----------------------~~~~l~~~~~~~~--~~~~~~~~~~- 745 (945)
..+|++++||. |++||+.. |+. ...++. ..+++. .+++.+....
T Consensus 108 ds~I~s~~DLk--Gk~Igv~~~~~~~~~gs~~~~~~~~~~~~~~~~~gs~~~~~~~~~L~-~~Gl~~~dv~~v~~~~~~~ 184 (365)
T 2de3_A 108 DSPITAAADLA--GRRIGVSASAIRILRGQLGDYLELDPWRQTLVALGSWEARALLHTLE-HGELGVDDVELVPISSPGV 184 (365)
T ss_dssp TCSCCSGGGGT--TCEEEECHHHHHHHHTCCTTGGGSCHHHHHHHHTTHHHHHHHHHHHH-HTTCCGGGSEEEECCCTTT
T ss_pred CCCCCCHHHhC--CCeEEeecccccccCCCcccccccchhhhhhhccchhhHHHHHHHHH-HcCCCHHHeEEEECCCccc
Confidence 35799999997 99999986 441 233443 344432 3445554421
Q ss_pred ------------------------HHHHHHhcCCCCCceeEEecchhhHHHHhccCCccEEEeCccc---cc-cceEEEe
Q 002267 746 ------------------------EYSIALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVGQEF---TK-SGWGFAF 797 (945)
Q Consensus 746 ------------------------~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~ 797 (945)
+...+|.+ |++|+++...++......+ . .+++.+.- .. ....+++
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~----G~vDA~~~~~p~~~~~~~~-g--~~~l~~~~~~~~~~~~~~l~~ 257 (365)
T 2de3_A 185 DVPAEQLEESATVKGADLFPDVARGQAAVLAS----GDVDALYSWLPWAGELQAT-G--ARPVVDLGLDERNAYASVWTV 257 (365)
T ss_dssp CCCHHHHHHSSBSSHHHHSTTHHHHHHHHHHS----SSCSEEEEEHHHHHHHHHT-T--EEESSCGGGSGGGCEEEEEEE
T ss_pred cccccccccccccccccccccchhhHHHHHhC----CCcCEEEEcchhHHHHHhC-C--CEEEEeCcccCCCCceEEEEE
Confidence 26888988 9999999888876654433 2 44443321 11 2235555
Q ss_pred cC----CCc-chHH----HHHHHHhccccc-cHHHHHHHhcC
Q 002267 798 QR----DSP-LAID----LSTAILQLSENG-DLQKIHNKWLT 829 (945)
Q Consensus 798 ~k----~sp-l~~~----i~~~i~~l~e~G-~~~~i~~~w~~ 829 (945)
++ ..| +... +.++...+.++. ...++..+|+.
T Consensus 258 ~~~~~~~~p~~v~~~~~a~~~a~~~~~~~p~~~~~i~~~~~~ 299 (365)
T 2de3_A 258 SSGLVRQRPGLVQRLVDAAVDAGLWARDHSDAVTSLHAANLG 299 (365)
T ss_dssp EHHHHHHCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHhC
Confidence 53 344 4444 444555555552 34445555543
No 286
>3hl0_A Maleylacetate reductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE NAD EPE; 1.60A {Agrobacterium tumefaciens str}
Probab=52.75 E-value=19 Score=38.28 Aligned_cols=83 Identities=8% Similarity=0.064 Sum_probs=58.0
Q ss_pred HHHHHHHHcCCeEEEEEEEeCCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcChh-
Q 002267 173 AVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPD- 251 (945)
Q Consensus 173 ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~~- 251 (945)
.+.++++.+|.+++.+|++.... ...+.+.+.|++.++.+ + ..+.+..+.+.+...++.+++.++|+||-.+.+.
T Consensus 24 ~l~~~l~~~g~~r~liVtd~~~~--~~~~~v~~~L~~~~~~v-~-~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs~ 99 (353)
T 3hl0_A 24 DVAEEIRRLGLSRALVLSTPQQK--GDAEALASRLGRLAAGV-F-SEAAMHTPVEVTKTAVEAYRAAGADCVVSLGGGST 99 (353)
T ss_dssp GHHHHHHHTTCCCEEEECCGGGH--HHHHHHHHHHGGGEEEE-E-CCCCTTCBHHHHHHHHHHHHHTTCSEEEEEESHHH
T ss_pred HHHHHHHHhCCCEEEEEecCchh--hHHHHHHHHHhhCCcEE-e-cCcCCCCcHHHHHHHHHHHhccCCCEEEEeCCcHH
Confidence 36677888999999888865443 35788888888876543 2 2333345667888888888889999998876543
Q ss_pred -hHHHHHHH
Q 002267 252 -TGLTIFSV 259 (945)
Q Consensus 252 -~~~~~~~~ 259 (945)
++.+++..
T Consensus 100 iD~aK~iA~ 108 (353)
T 3hl0_A 100 TGLGKAIAL 108 (353)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 55555544
No 287
>3fd3_A Chromosome replication initiation inhibitor prote; structural genomics, LYSR, PSI-2, structure initiative; HET: MSE P33 PG4; 1.70A {Agrobacterium tumefaciens str}
Probab=52.49 E-value=68 Score=29.89 Aligned_cols=68 Identities=12% Similarity=-0.047 Sum_probs=42.7
Q ss_pred eeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHHHHHHHHHcCcccEEEecEEEecCcceeEEecccccccceEEEEEc
Q 002267 512 GYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDITIVTNRTKLVDFTQPYMESGLVVVAPV 591 (945)
Q Consensus 512 G~~~dll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~~~~t~~r~~~~dfs~p~~~~~~~~vv~~ 591 (945)
.+-.+++..+.++.+ +++++.. ++..++++.+.+|..|+++..-... ...+. +.++....++++++.
T Consensus 15 ~~l~~~l~~f~~~~~--v~l~l~~-------~~~~~~~~~l~~g~d~~~i~~~~~~---~~~l~-~~~l~~~~~~~v~~~ 81 (208)
T 3fd3_A 15 TWFLDAVSKFTGGSD--YLVNIAV-------DDQDHTVEWLRGGRVLAAVTAHDKP---VQGCR-VTPLGVLRYHATASP 81 (208)
T ss_dssp TTHHHHHHHHHHTSS--CEEEEEE-------CCSSCHHHHHHTTSCSEEEESCCSC---CTTCE-EEEEEEEEEEEEECH
T ss_pred HHHHHHHHHHHhhcC--eEEEEEe-------CCcHhHHHHHhcCcceEEEecCCCC---CCCce-EEEccceEEEEEECh
Confidence 466788999988885 5566665 4456788999999555544321111 11122 466777778777765
Q ss_pred c
Q 002267 592 Q 592 (945)
Q Consensus 592 ~ 592 (945)
.
T Consensus 82 ~ 82 (208)
T 3fd3_A 82 D 82 (208)
T ss_dssp H
T ss_pred H
Confidence 4
No 288
>3lr1_A Tungstate ABC transporter, periplasmic tungstate- binding protein; the tungstate ABC transporter, structural genomics, PSI, MCSG; 1.80A {Geobacter sulfurreducens}
Probab=52.29 E-value=6.8 Score=38.88 Aligned_cols=75 Identities=9% Similarity=-0.028 Sum_probs=52.8
Q ss_pred eeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHHHHHHHHHcCcccEEEecEEEecCcc---eeEEecccccccceEE
Q 002267 511 KGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDITIVTNRT---KLVDFTQPYMESGLVV 587 (945)
Q Consensus 511 ~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~~~~t~~r~---~~~dfs~p~~~~~~~~ 587 (945)
.|+.-+|+..+.++.|.++.+.+ +.-..++.++.+|.+|+++..-....+.. ....-..|+....+++
T Consensus 18 ~~ll~~L~~~Fek~~gv~V~~~~---------~gSg~ll~qi~~G~aDV~isa~~~~~~~l~~~g~~~~~~~~~~n~lVl 88 (236)
T 3lr1_A 18 SGLLKVLLPPFEKKNNVKVDVIA---------VGTGQALKLGEAGDVDVVFVHARKLEDKFVADGFGVNRKDVMYNDFVI 88 (236)
T ss_dssp HCHHHHHHHHHHHHHTCEEEEEE---------ECHHHHHHHHHTTSCSEEEECCHHHHHHHHHTTSEEEEEEEEECCEEE
T ss_pred hHHHHHHHHHHHHHhCCeEEEEE---------cChHHHHHHHhcCCCCEEeecCchhHHHHHhcCCCcceEEEEcCcEEE
Confidence 46777899999888787655554 44677999999999999876443322211 1122246889999999
Q ss_pred EEEccCC
Q 002267 588 VAPVQKL 594 (945)
Q Consensus 588 vv~~~~~ 594 (945)
++|+.++
T Consensus 89 V~P~~~P 95 (236)
T 3lr1_A 89 VGPKNDP 95 (236)
T ss_dssp EECTTCT
T ss_pred EEECCCh
Confidence 9998874
No 289
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=52.22 E-value=19 Score=36.93 Aligned_cols=82 Identities=11% Similarity=0.021 Sum_probs=58.2
Q ss_pred eEEEEEEEe--CCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEc-ChhhHHHHHHHH
Q 002267 184 REVIAIFVD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHV-NPDTGLTIFSVA 260 (945)
Q Consensus 184 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~-~~~~~~~~~~~a 260 (945)
.+|+++..+ ++|.......+++++++.|.++.....-.. .+.......++.+...++|.||+.. ........++++
T Consensus 4 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~-~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~ 82 (297)
T 3rot_A 4 DKYYLITHGSQDPYWTSLFQGAKKAAEELKVDLQILAPPGA-NDVPKQVQFIESALATYPSGIATTIPSDTAFSKSLQRA 82 (297)
T ss_dssp CEEEEECSCCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSS-CCHHHHHHHHHHHHHTCCSEEEECCCCSSTTHHHHHHH
T ss_pred EEEEEEecCCCCchHHHHHHHHHHHHHHhCcEEEEECCCCc-CCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHH
Confidence 467787754 678888899999999999998876532110 1445556778888888999998864 344446677888
Q ss_pred HhCCCC
Q 002267 261 KSLGMT 266 (945)
Q Consensus 261 ~~~g~~ 266 (945)
.+.|+.
T Consensus 83 ~~~giP 88 (297)
T 3rot_A 83 NKLNIP 88 (297)
T ss_dssp HHHTCC
T ss_pred HHCCCC
Confidence 877753
No 290
>2xxp_A CPS2A; replication, peptidoglycan, LCP, LYTR; HET: DSL PEG; 1.69A {Streptococcus pneumoniae} PDB: 3tep_A* 3tfl_A* 2xxq_A* 3tel_A* 4de8_A*
Probab=52.11 E-value=16 Score=39.34 Aligned_cols=68 Identities=16% Similarity=0.096 Sum_probs=51.9
Q ss_pred cCCCCChHHhhcCCCCeEEeeCchHHHHHHHhh------ccccccceecCCHHHHHHHHhcCCCCCceeEEecchhhHHH
Q 002267 699 TSQIEGIDSLISSTEPIGVQDGSFAWNYLVDEL------KIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIEL 772 (945)
Q Consensus 699 ~~~i~~~~dL~~~~~~v~~~~~s~~~~~l~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~ 772 (945)
...|++++||. | ||++.+.....+..... +. ..+++.|++..+++.+|.+ |++||++.+..+...
T Consensus 25 ds~i~sl~DLk--g--vgv~~~~~~~~~~~~~~~i~~~~g~-~~~~~~y~~~~~a~~aL~n----G~vDAiv~~~~~~~~ 95 (398)
T 2xxp_A 25 DSEIENVTQLT--S--VTAPTGTDNENIQKLLADIKSSQNT-DLTVNQSSSYLAAYKSLIA----GETKAIVLNSVFENI 95 (398)
T ss_dssp TCSCCSGGGCS--E--EEECTTTSHHHHHHHHHHHHHHSCC-CCEEEECSSHHHHHHHHHT----TSCSCEEEEHHHHHH
T ss_pred CCCcCCHHHhc--C--eeeECCCCHHHHHHHHHHHHHhhCC-cceEEecCCHHHHHHHHHc----CCCCEEEEchHHHHH
Confidence 37899999997 5 99998886665543211 22 1357889999999999999 999999999887766
Q ss_pred Hhc
Q 002267 773 FMS 775 (945)
Q Consensus 773 ~~~ 775 (945)
+-.
T Consensus 96 le~ 98 (398)
T 2xxp_A 96 IEL 98 (398)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
No 291
>2hxw_A Major antigenic peptide PEB3; periplasmic binding protein, N-glycosylation, structural genomics; HET: FLC; 1.60A {Campylobacter jejuni} PDB: 3fjm_A 3fjg_A 3fir_A* 3fj7_A*
Probab=51.83 E-value=35 Score=33.35 Aligned_cols=40 Identities=13% Similarity=0.049 Sum_probs=29.0
Q ss_pred HHHHHHHHHhCCCCccEEEEEcCCCCCCCCHHHHHHHHHcCcccEEEecE
Q 002267 515 IDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDI 564 (945)
Q Consensus 515 ~dll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~~ 564 (945)
-++++.+.++.|.++++.+ ++-..++.+|. +.+|+++.+-
T Consensus 16 ~~~~~~F~~~~gi~V~~~~---------~~s~~l~~~l~-~~~Dv~~~~~ 55 (237)
T 2hxw_A 16 KDIANKYSEKTGVKVNVNF---------GPQATWFEKAK-KDADILFGAS 55 (237)
T ss_dssp HHHHHHHHHHHCCCEEEEE---------SSHHHHHHHHH-HHCSEEEESS
T ss_pred HHHHHHHHHHhCceEEEEe---------CChHHHHHHhc-cCCCEEEeCC
Confidence 4677888777787755533 55678888888 8899987643
No 292
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=51.63 E-value=16 Score=37.56 Aligned_cols=87 Identities=7% Similarity=-0.028 Sum_probs=55.9
Q ss_pred HHHHHHcCCeEEEEEEEe-------CCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEE
Q 002267 175 ADLVEYYGWREVIAIFVD-------DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVH 247 (945)
Q Consensus 175 ~~~l~~~~w~~v~ii~~d-------~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~ 247 (945)
+.-++.-.-+.|+++..+ ++|.......+.+++++.|..+... ....+.......++.+...++|.||+.
T Consensus 14 Ar~L~~~~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~---~~~~~~~~~~~~~~~l~~~~vdgiIi~ 90 (305)
T 3huu_A 14 ARTLITNKTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRMT---VSENSGDLYHEVKTMIQSKSVDGFILL 90 (305)
T ss_dssp -------CCCEEEEECSCCSHHHHTSHHHHHHHHHHHHHHHHHTCEEEEC---CCSSHHHHHHHHHHHHHTTCCSEEEES
T ss_pred HHHhhhCCCCEEEEEeCCCccccccCcHHHHHHHHHHHHHHHCCCEEEEE---eCCCChHHHHHHHHHHHhCCCCEEEEe
Confidence 333444556789998765 5577778899999999999987653 211233344567778888899999987
Q ss_pred cChhhHHHHHHHHHhCCC
Q 002267 248 VNPDTGLTIFSVAKSLGM 265 (945)
Q Consensus 248 ~~~~~~~~~~~~a~~~g~ 265 (945)
..... ...++.+.+.|+
T Consensus 91 ~~~~~-~~~~~~l~~~~i 107 (305)
T 3huu_A 91 YSLKD-DPIEHLLNEFKV 107 (305)
T ss_dssp SCBTT-CHHHHHHHHTTC
T ss_pred CCcCC-cHHHHHHHHcCC
Confidence 54322 255667777665
No 293
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=51.62 E-value=31 Score=35.08 Aligned_cols=79 Identities=13% Similarity=-0.104 Sum_probs=54.3
Q ss_pred CeEEEEEEEe--CCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcChhhHHHHHHHH
Q 002267 183 WREVIAIFVD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVA 260 (945)
Q Consensus 183 w~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~~~~~~~~~~a 260 (945)
-+.|+++..+ ++|.......+.+++++.|..+..... . .+.......++.+...++|.||+...... ...++.+
T Consensus 16 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~--~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~~~l 91 (289)
T 2fep_A 16 TTTVGVIIPDISSIFYSELARGIEDIATMYKYNIILSNS-D--QNMEKELHLLNTMLGKQVDGIVFMGGNIT-DEHVAEF 91 (289)
T ss_dssp CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC-T--TCHHHHHHHHHHHHHTTCSEEEECCSCCC-HHHHHHH
T ss_pred CCeEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeC-C--CCHHHHHHHHHHHHhCCCCEEEEecCCCC-HHHHHHH
Confidence 3678888864 667778889999999999998765422 1 24444556777777788999998753222 2345666
Q ss_pred HhCCC
Q 002267 261 KSLGM 265 (945)
Q Consensus 261 ~~~g~ 265 (945)
.+.|.
T Consensus 92 ~~~~i 96 (289)
T 2fep_A 92 KRSPV 96 (289)
T ss_dssp HHSSS
T ss_pred HhcCC
Confidence 66664
No 294
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=51.54 E-value=28 Score=35.22 Aligned_cols=79 Identities=11% Similarity=0.001 Sum_probs=53.6
Q ss_pred eEEEEEEEe--CCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcC-hhhHHHHHHHH
Q 002267 184 REVIAIFVD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN-PDTGLTIFSVA 260 (945)
Q Consensus 184 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~-~~~~~~~~~~a 260 (945)
+.|+++..+ ++|.....+.+.+++++.|..+.....- .+...-...++.+...++|.||+... .......++.+
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~~~~---~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 78 (283)
T 2ioy_A 2 KTIGLVISTLNNPFFVTLKNGAEEKAKELGYKIIVEDSQ---NDSSKELSNVEDLIQQKVDVLLINPVDSDAVVTAIKEA 78 (283)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEECT---TCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHH
T ss_pred eEEEEEecCCCCHHHHHHHHHHHHHHHhcCcEEEEecCC---CCHHHHHHHHHHHHHcCCCEEEEeCCchhhhHHHHHHH
Confidence 467888754 6677788899999999999987654321 23334455677777788999888643 33334566777
Q ss_pred HhCCC
Q 002267 261 KSLGM 265 (945)
Q Consensus 261 ~~~g~ 265 (945)
.+.|+
T Consensus 79 ~~~~i 83 (283)
T 2ioy_A 79 NSKNI 83 (283)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 77675
No 295
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=51.10 E-value=32 Score=34.89 Aligned_cols=59 Identities=8% Similarity=-0.082 Sum_probs=36.1
Q ss_pred CCCcEEEEEEecCC------CChHHHHHH----HHHHHhcCcEEEEccCChhHHHHHHHhhcccCccEEe
Q 002267 85 LPGTTLNFVIRDTN------CSGFVGTME----ALQLMENEVVAAIGPQSSGIAHVISHVVNELNVPLLS 144 (945)
Q Consensus 85 l~g~~l~l~~~D~~------~~~~~a~~~----a~~li~~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is 144 (945)
||+..+.+ +.|+. .+.....+. +..|.+.++.+|+=+-.+..+.++..+-+..++|+|.
T Consensus 47 lP~e~~iy-~~D~a~~PYG~ks~e~i~~~~~~~~~~L~~~g~d~IVIACNTa~~~al~~lr~~~~iPvig 115 (274)
T 3uhf_A 47 RLFDEIIY-YGDTARVPYGVKDKDTIIKFCLEALDFFEQFQIDMLIIACNTASAYALDALRAKAHFPVYG 115 (274)
T ss_dssp TCCSEEEE-EECTTTCCCTTSCHHHHHHHHHHHHHHHTTSCCSEEEECCHHHHHHSHHHHHHHCSSCEEC
T ss_pred CCCCCEEE-EecCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEeCCChhHHHHHHHHHhcCCCEEc
Confidence 36666654 44642 344444333 3334445898888765555555566777788999996
No 296
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=50.93 E-value=34 Score=34.32 Aligned_cols=79 Identities=4% Similarity=-0.004 Sum_probs=53.9
Q ss_pred eEEEEEEEe--CCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcCh-hhHHHHHHHH
Q 002267 184 REVIAIFVD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNP-DTGLTIFSVA 260 (945)
Q Consensus 184 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~-~~~~~~~~~a 260 (945)
+.|+++..+ ++|.......+.+++++.|.++..... . .+...-...++.+...++|.||+.... ......++.+
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~~~~~g~~~~~~~~-~--~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 78 (271)
T 2dri_A 2 DTIALVVSTLNNPFFVSLKDGAQKEADKLGYNLVVLDS-Q--NNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMA 78 (271)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCEEEEEEC-T--TCHHHHHHHHHHHTTTTEEEEEECCSSTTTTHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHHHHcCcEEEEeCC-C--CCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHH
Confidence 567888754 667778889999999999988765422 1 233344556777777889999886433 3333566777
Q ss_pred HhCCC
Q 002267 261 KSLGM 265 (945)
Q Consensus 261 ~~~g~ 265 (945)
.+.|.
T Consensus 79 ~~~~i 83 (271)
T 2dri_A 79 NQANI 83 (271)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 77664
No 297
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=50.90 E-value=33 Score=34.84 Aligned_cols=81 Identities=7% Similarity=0.016 Sum_probs=52.5
Q ss_pred HHHcCCeEEEEEEEe--CCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcChhhHHH
Q 002267 178 VEYYGWREVIAIFVD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLT 255 (945)
Q Consensus 178 l~~~~w~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~~~~~~ 255 (945)
++.-.-+.|+++. + ++|.....+.+.+++++.|..+.....-. +.. -...++.+...+.|.||+....... .
T Consensus 7 L~~~~~~~Igvi~-~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~---~~~-~~~~~~~l~~~~vdgiIi~~~~~~~-~ 80 (289)
T 3k9c_A 7 LRQASSRLLGVVF-ELQQPFHGDLVEQIYAAATRRGYDVMLSAVAP---SRA-EKVAVQALMRERCEAAILLGTRFDT-D 80 (289)
T ss_dssp ------CEEEEEE-ETTCHHHHHHHHHHHHHHHHTTCEEEEEEEBT---TBC-HHHHHHHHTTTTEEEEEEETCCCCH-H
T ss_pred hhcCCCCEEEEEE-ecCCchHHHHHHHHHHHHHHCCCEEEEEeCCC---CHH-HHHHHHHHHhCCCCEEEEECCCCCH-H
Confidence 3344456788887 5 56677788999999999999877654322 222 4567778888899999998644333 5
Q ss_pred HHHHHHhCCC
Q 002267 256 IFSVAKSLGM 265 (945)
Q Consensus 256 ~~~~a~~~g~ 265 (945)
.++.+.+ |+
T Consensus 81 ~~~~~~~-~i 89 (289)
T 3k9c_A 81 ELGALAD-RV 89 (289)
T ss_dssp HHHHHHT-TS
T ss_pred HHHHHHc-CC
Confidence 5566654 54
No 298
>3s81_A Putative aspartate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta fold, cytosol; 1.80A {Salmonella enterica subsp} PDB: 3s7z_A
Probab=50.87 E-value=24 Score=35.65 Aligned_cols=39 Identities=10% Similarity=0.031 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCcEEEEccCChhHHHHHHHhhcccCccEEe
Q 002267 105 TMEALQLMENEVVAAIGPQSSGIAHVISHVVNELNVPLLS 144 (945)
Q Consensus 105 ~~~a~~li~~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is 144 (945)
.+.+..|.+.++.+|+=+-.+..+ ++..+-+..++|+|.
T Consensus 89 ~~~~~~L~~~Gad~IVIaCNTah~-~l~~lr~~~~iPvig 127 (268)
T 3s81_A 89 ERYLHMLEDAGAECIVIPCNTAHY-WFDDLQNVAKARMIS 127 (268)
T ss_dssp HHHHHHHHHTTCSEEECSCSGGGG-GHHHHHHHCSSEEEC
T ss_pred HHHHHHHHHcCCCEEEEeCCCHHH-HHHHHHHHCCCCEEc
Confidence 344555666699999887666544 556666778999996
No 299
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=50.67 E-value=44 Score=34.95 Aligned_cols=78 Identities=6% Similarity=-0.045 Sum_probs=55.8
Q ss_pred eEEEEEEEe--CCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcChhhHHHHHHHHH
Q 002267 184 REVIAIFVD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAK 261 (945)
Q Consensus 184 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~~~~~~~~~~a~ 261 (945)
+.|+++..+ ++|.....+.+.+++++.|..+.....- .+.......++.+...++|.||+....... ..++.+.
T Consensus 69 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~i~~l~~~~vdGiIi~~~~~~~-~~~~~l~ 144 (344)
T 3kjx_A 69 NLVAVIIPSLSNMVFPEVLTGINQVLEDTELQPVVGVTD---YLPEKEEKVLYEMLSWRPSGVIIAGLEHSE-AARAMLD 144 (344)
T ss_dssp SEEEEEESCSSSSSHHHHHHHHHHHHTSSSSEEEEEECT---TCHHHHHHHHHHHHTTCCSEEEEECSCCCH-HHHHHHH
T ss_pred CEEEEEeCCCCcHHHHHHHHHHHHHHHHCCCEEEEEeCC---CCHHHHHHHHHHHHhCCCCEEEEECCCCCH-HHHHHHH
Confidence 578888754 6777888999999999999988644221 244555667788888899999987543332 5666677
Q ss_pred hCCC
Q 002267 262 SLGM 265 (945)
Q Consensus 262 ~~g~ 265 (945)
+.|+
T Consensus 145 ~~~i 148 (344)
T 3kjx_A 145 AAGI 148 (344)
T ss_dssp HCSS
T ss_pred hCCC
Confidence 7665
No 300
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=49.87 E-value=24 Score=28.16 Aligned_cols=100 Identities=17% Similarity=0.247 Sum_probs=57.2
Q ss_pred CCceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEeCCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhh
Q 002267 157 YPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGA 236 (945)
Q Consensus 157 ~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l 236 (945)
+-+-.|+..+....-..+-++++.|+.+-|.++.+|.+|.+..+. +.+.+.+.-+-+.| . .+.......-.++
T Consensus 25 ngfkvrtvrspqelkdsieelvkkynativvvvvddkewaekair-fvkslgaqvliiiy----d--qdqnrleefsrev 97 (134)
T 2l69_A 25 NGFKVRTVRSPQELKDSIEELVKKYNATIVVVVVDDKEWAEKAIR-FVKSLGAQVLIIIY----D--QDQNRLEEFSREV 97 (134)
T ss_dssp TTCEEEEECSHHHHHHHHHHHTTCCCCEEEEEECSSHHHHHHHHH-HHHHHCCCCEEEEE----C--SCHHHHHHHHHHH
T ss_pred cCceEEEecCHHHHHHHHHHHHHHhCCeEEEEEEccHHHHHHHHH-HHHhcCCeEEEEEE----e--CchhHHHHHHHHH
Confidence 456689999988888899999999998877777766665443333 33444333333332 2 3444444444455
Q ss_pred ccCCceEEEEEcChhhHHHHHH-HHHhCC
Q 002267 237 NLMESRVFVVHVNPDTGLTIFS-VAKSLG 264 (945)
Q Consensus 237 ~~~~~~vivl~~~~~~~~~~~~-~a~~~g 264 (945)
+..+-.+--+ .++++...-+. ..++.|
T Consensus 98 rrrgfevrtv-tspddfkkslerlirevg 125 (134)
T 2l69_A 98 RRRGFEVRTV-TSPDDFKKSLERLIREVG 125 (134)
T ss_dssp HHTTCCEEEE-SSHHHHHHHHHHHHHHHC
T ss_pred HhcCceEEEe-cChHHHHHHHHHHHHHhc
Confidence 5555444333 45555444433 334444
No 301
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=49.70 E-value=23 Score=35.54 Aligned_cols=80 Identities=6% Similarity=0.027 Sum_probs=56.5
Q ss_pred EEEEEEEe--CCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCC-ceEEEEEcC-hhhHHHHHHHH
Q 002267 185 EVIAIFVD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLME-SRVFVVHVN-PDTGLTIFSVA 260 (945)
Q Consensus 185 ~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~-~~vivl~~~-~~~~~~~~~~a 260 (945)
+|+++..+ ++|.....+.+++++++.|.++.....-. ..+.......++.+.+.+ +|.||+... .......++.+
T Consensus 2 ~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~-~~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~~~~~~~~~ 80 (276)
T 3ksm_A 2 KLLLVLKGDSNAYWRQVYLGAQKAADEAGVTLLHRSTKD-DGDIAGQIQILSYHLSQAPPDALILAPNSAEDLTPSVAQY 80 (276)
T ss_dssp EEEEECSCSSSTHHHHHHHHHHHHHHHHTCEEEECCCSS-TTCHHHHHHHHHHHHHHSCCSEEEECCSSTTTTHHHHHHH
T ss_pred eEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECCCC-CCCHHHHHHHHHHHHHhCCCCEEEEeCCCHHHHHHHHHHH
Confidence 57777653 66778889999999999999887543111 123444556777777778 999998763 34556778888
Q ss_pred HhCCC
Q 002267 261 KSLGM 265 (945)
Q Consensus 261 ~~~g~ 265 (945)
.+.|+
T Consensus 81 ~~~~i 85 (276)
T 3ksm_A 81 RARNI 85 (276)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 88775
No 302
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=49.44 E-value=24 Score=35.88 Aligned_cols=80 Identities=4% Similarity=-0.029 Sum_probs=55.6
Q ss_pred CCeEEEEEEEe-------CCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcChhhHH
Q 002267 182 GWREVIAIFVD-------DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGL 254 (945)
Q Consensus 182 ~w~~v~ii~~d-------~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~~~~~ 254 (945)
.-+.|+++..+ ++|.......+.+++++.|..+... ....+.......++.+...++|.||+...... .
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~---~~~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~-~ 82 (292)
T 3k4h_A 7 TTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYMS---TGETEEEIFNGVVKMVQGRQIGGIILLYSREN-D 82 (292)
T ss_dssp CCCEEEEECSSCHHHHTTSTHHHHHHHHHHHHHHHTTCEEEEC---CCCSHHHHHHHHHHHHHTTCCCEEEESCCBTT-C
T ss_pred CCCEEEEEecCCccccccCHHHHHHHHHHHHHHHHcCCEEEEE---eCCCCHHHHHHHHHHHHcCCCCEEEEeCCCCC-h
Confidence 44678888765 5677788899999999999987642 21123344466777788889999998654322 2
Q ss_pred HHHHHHHhCCC
Q 002267 255 TIFSVAKSLGM 265 (945)
Q Consensus 255 ~~~~~a~~~g~ 265 (945)
..++.+.+.|+
T Consensus 83 ~~~~~l~~~~i 93 (292)
T 3k4h_A 83 RIIQYLHEQNF 93 (292)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHCCC
Confidence 56677777775
No 303
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=49.39 E-value=47 Score=31.14 Aligned_cols=66 Identities=14% Similarity=0.072 Sum_probs=47.7
Q ss_pred cCCeEEEEEEEeCC-c------c---cchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccC-CceEEEEEc
Q 002267 181 YGWREVIAIFVDDD-Y------G---RNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLM-ESRVFVVHV 248 (945)
Q Consensus 181 ~~w~~v~ii~~d~~-~------g---~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~-~~~vivl~~ 248 (945)
+.--+|++|...|+ + | ......+...+++.|.++.....++ .+.+.+...+.+..+. ++|+||..+
T Consensus 13 ~~~~rv~IittGde~~~~~~~~G~i~Dsn~~~L~~~l~~~G~~v~~~~iv~--Dd~~~I~~al~~a~~~~~~DlVittG 89 (178)
T 2pjk_A 13 PKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVP--DDKIKILKAFTDALSIDEVDVIISTG 89 (178)
T ss_dssp CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEEC--SCHHHHHHHHHHHHTCTTCCEEEEES
T ss_pred CCCCEEEEEEeCcccccccccCCeEeehHHHHHHHHHHHCCCEEEEEEEeC--CCHHHHHHHHHHHHhcCCCCEEEECC
Confidence 44567888876542 1 2 3445678889999999998877776 4667788888876544 589999875
No 304
>1ta9_A Glycerol dehydrogenase; oxidoredu; 1.90A {Schizosaccharomyces pombe}
Probab=49.05 E-value=28 Score=38.27 Aligned_cols=96 Identities=11% Similarity=0.069 Sum_probs=63.2
Q ss_pred HHHHHHHHcCCeEEEEEEEeCCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcC--h
Q 002267 173 AVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN--P 250 (945)
Q Consensus 173 ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~--~ 250 (945)
.+.++++.+|.+++.+|++...+. ...+.+.+.|++.|+++.+. .+....+.+.+....+.+++ ++|+||-.+. .
T Consensus 81 ~l~~~l~~~g~~rvlIVtd~~~~~-~~~~~v~~~L~~~gi~~~~~-~~~ge~~~~~v~~~~~~~~~-~~D~IIAvGGGSv 157 (450)
T 1ta9_A 81 RSYMYVKKWATKSAVVLADQNVWN-ICANKIVDSLSQNGMTVTKL-VFGGEASLVELDKLRKQCPD-DTQVIIGVGGGKT 157 (450)
T ss_dssp GHHHHHTTTCSSEEEEEEEHHHHH-HTHHHHHHHHHHTTCEEEEE-EECSCCCHHHHHHHHTTSCT-TCCEEEEEESHHH
T ss_pred HHHHHHHhcCCCEEEEEECccHHH-HHHHHHHHHHHHCCCeEEEE-eeCCCCCHHHHHHHHHHHhh-CCCEEEEeCCcHH
Confidence 355667777866898888654433 46788899999999887432 23333456678888888888 9999997654 4
Q ss_pred hhHHHHHHHHHhCCCCCCCeEEEEeC
Q 002267 251 DTGLTIFSVAKSLGMTAGSYVWIATD 276 (945)
Q Consensus 251 ~~~~~~~~~a~~~g~~~~~~~wi~~~ 276 (945)
-++.+++.. ..| -.++-|-|.
T Consensus 158 iD~AK~iA~--~~g---iP~I~IPTT 178 (450)
T 1ta9_A 158 MDSAKYIAH--SMN---LPSIICPTT 178 (450)
T ss_dssp HHHHHHHHH--HTT---CCEEEEESS
T ss_pred HHHHHHHHH--hcC---CCEEEEeCC
Confidence 466666652 223 234555554
No 305
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=49.03 E-value=11 Score=38.79 Aligned_cols=54 Identities=19% Similarity=0.175 Sum_probs=47.1
Q ss_pred cchhhHHHHHHHHhhccc--cCcccccchhhHHHHHHHHHHhhhhhhhhhhheeee
Q 002267 641 QQLVTIFWFSFSTMFFSH--RENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILT 694 (945)
Q Consensus 641 ~~~~~~~~~~~~~l~~~~--~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt 694 (945)
-++.+++||++.++..-+ .-.|.+..+|++.++|.++++.+.....+.+.+.+.
T Consensus 114 w~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~ 169 (309)
T 3um7_A 114 WDLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLG 169 (309)
T ss_dssp CSHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999997665 558999999999999999999999999999887753
No 306
>3jzd_A Iron-containing alcohol dehydrogenase; YP_298327.1, putative alcohol dehedrogenase, structural GENO joint center for structural genomics; HET: MSE NAD PG4 P6G PGE; 2.10A {Ralstonia eutropha}
Probab=48.73 E-value=28 Score=37.00 Aligned_cols=95 Identities=18% Similarity=0.106 Sum_probs=62.8
Q ss_pred HHHHHHHHcCCeEEEEEEEeCCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcChh-
Q 002267 173 AVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPD- 251 (945)
Q Consensus 173 ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~~- 251 (945)
.+.++++.+|.+++.+|++...+ ...+.+.+.|++.++.+ + ....+.++.+.+...++.+++.++|+||-.+.+.
T Consensus 26 ~l~~~l~~~g~~r~liVtd~~~~--~~~~~v~~~L~~~~~~~-f-~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsv 101 (358)
T 3jzd_A 26 QVAAEVERLGAKRALVLCTPNQQ--AEAERIADLLGPLSAGV-Y-AGAVMHVPIESARDATARAREAGADCAVAVGGGST 101 (358)
T ss_dssp GHHHHHHHTTCSCEEEECCGGGH--HHHHHHHHHHGGGEEEE-E-CCCCTTCBHHHHHHHHHHHHHHTCSEEEEEESHHH
T ss_pred HHHHHHHHhCCCeEEEEeCCcHH--HHHHHHHHHhccCCEEE-e-cCCcCCCCHHHHHHHHHHhhccCCCEEEEeCCcHH
Confidence 46677888999999999865543 35678888888775433 2 2333345667788888888888999998876543
Q ss_pred -hHHHHHHHHHhCCCCCCCeEEEEeC
Q 002267 252 -TGLTIFSVAKSLGMTAGSYVWIATD 276 (945)
Q Consensus 252 -~~~~~~~~a~~~g~~~~~~~wi~~~ 276 (945)
++.+++... .++ .++-|-|.
T Consensus 102 iD~aK~iA~~--~~~---p~i~IPTT 122 (358)
T 3jzd_A 102 TGLGKAIALE--TGM---PIVAIPTT 122 (358)
T ss_dssp HHHHHHHHHH--HCC---CEEEEECS
T ss_pred HHHHHHHHhc--cCC---CEEEEeCC
Confidence 556665442 232 34555554
No 307
>3qvl_A Putative hydantoin racemase; isomerase; HET: 5HY; 1.82A {Klebsiella pneumoniae subsp} PDB: 3qvk_A* 3qvj_A
Probab=48.33 E-value=1.1e+02 Score=30.19 Aligned_cols=160 Identities=13% Similarity=0.065 Sum_probs=81.1
Q ss_pred EEEEEEeccCCccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCC-------ChHHHH----HHHHHHHhcCcEEE
Q 002267 51 VRIGALFTYDSVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNC-------SGFVGT----MEALQLMENEVVAA 119 (945)
Q Consensus 51 i~IG~l~~l~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~-------~~~~a~----~~a~~li~~~v~ai 119 (945)
.+|.++-|-++. .+-..+.-+++.+. . +|.++.....+.+- +...+. +.+.++.++++.+|
T Consensus 2 mrilvINPnts~---~~T~~i~~~~~~~~-~----p~~~i~~~t~~~gp~~i~~~~d~~~a~~~l~~~~~~l~~~g~d~i 73 (245)
T 3qvl_A 2 VRIQVINPNTSL---AMTETIGAAARAVA-A----PGTEILAVCPRAGVPSIEGHFDEAIAAVGVLEQIRAGREQGVDGH 73 (245)
T ss_dssp EEEEEECSSCCH---HHHHHHHHHHHHHC-C----TTEEEEEECCSSSCSSCCSHHHHHHHHHHHHHHHHHHHHHTCSEE
T ss_pred CEEEEEeCCCCH---HHHHHHHHHHHHhc-C----CCCEEEEEeCCCCchhhcChhHHHHHHHHHHHHHHHHHHCCCCEE
Confidence 478899998752 45566666666653 1 57788876655432 222332 22223334478777
Q ss_pred EccCChhHHHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEeCCcccch
Q 002267 120 IGPQSSGIAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDDYGRNG 199 (945)
Q Consensus 120 iGp~~s~~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~ 199 (945)
+=+-.+..+ +..+-+..++|+|.. .++.+......+ ++|+++......
T Consensus 74 viaCnt~~~--l~~lr~~~~iPvigi-------------------------~e~~~~~a~~~~-~rigVlaT~~t~---- 121 (245)
T 3qvl_A 74 VIASFGDPG--LLAARELAQGPVIGI-------------------------AEAAMHMATMVA-TRFSIVTTLPRT---- 121 (245)
T ss_dssp EEC-CCCTT--HHHHHHHCSSCEEEH-------------------------HHHHHHHHHHHC-SCEEEEESCGGG----
T ss_pred EEeCCChhH--HHHHHHHcCCCEECc-------------------------cHHHHHHHHHcC-CEEEEEEcchhH----
Confidence 654444333 234445678888852 122222121224 789999865432
Q ss_pred HHHHHHHHhhcCcE--EEEee--cCCCC---CC----hHHHHHHHHhh-ccCCceEEEEEcCh
Q 002267 200 ISVLGDALSKKRAK--ISYKA--PFSPG---AS----RSAINSLLVGA-NLMESRVFVVHVNP 250 (945)
Q Consensus 200 ~~~l~~~l~~~g~~--v~~~~--~~~~~---~~----~~d~~~~l~~l-~~~~~~vivl~~~~ 250 (945)
...+++.+++.|.. +.... .++.. .+ ...+.....++ +..++|+||+.|.+
T Consensus 122 ~~~~~~~l~~~g~~~~~~~v~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~gad~IVLGCTh 184 (245)
T 3qvl_A 122 LIIARHLLHQYGFHQHCAALHAIDLPVLALEDGSGLAQEKVRERCIRALKEDGSGAIVLGSGG 184 (245)
T ss_dssp HHHHHHHHHHHTCGGGEEEEEECCSCGGGGGSSSSHHHHHHHHHHHHHHHHSCCSEEEECCGG
T ss_pred HHHHHHHHHHcCCCCeEEEEeCCCCCHHHHcCCcHHHHHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 35555666655542 22111 11100 01 12233333332 34688999997644
No 308
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=48.20 E-value=52 Score=30.45 Aligned_cols=66 Identities=9% Similarity=0.067 Sum_probs=48.6
Q ss_pred cCCeEEEEEEEeCCccc---chHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhcc-CCceEEEEEc
Q 002267 181 YGWREVIAIFVDDDYGR---NGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANL-MESRVFVVHV 248 (945)
Q Consensus 181 ~~w~~v~ii~~d~~~g~---~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~-~~~~vivl~~ 248 (945)
|.--++++|...|+-|+ .....+.+.+++.|+++.....++ .+.+.+...+++..+ .++|+||..+
T Consensus 11 ~~~~rv~Ii~tGdElg~i~Dsn~~~l~~~L~~~G~~v~~~~iv~--Dd~~~i~~~l~~~~~~~~~DlVittG 80 (169)
T 1y5e_A 11 PKEVRCKIVTISDTRTEETDKSGQLLHELLKEAGHKVTSYEIVK--DDKESIQQAVLAGYHKEDVDVVLTNG 80 (169)
T ss_dssp -CCCEEEEEEECSSCCTTTCHHHHHHHHHHHHHTCEEEEEEEEC--SSHHHHHHHHHHHHTCTTCSEEEEEC
T ss_pred ccCCEEEEEEEcCccCeeccChHHHHHHHHHHCCCeEeEEEEeC--CCHHHHHHHHHHHHhcCCCCEEEEcC
Confidence 34457888887665553 235678888999999998877777 466788888888764 3789999875
No 309
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=47.90 E-value=37 Score=32.01 Aligned_cols=65 Identities=14% Similarity=0.073 Sum_probs=47.1
Q ss_pred CCeEEEEEEEeCCc----ccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEc
Q 002267 182 GWREVIAIFVDDDY----GRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHV 248 (945)
Q Consensus 182 ~w~~v~ii~~d~~~----g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~ 248 (945)
.--+|++|...|+- -......+...+++.|.++.....++ .+.+.+...+++....++|+||..+
T Consensus 29 ~~~rvaIistGdEl~~G~~Dsn~~~L~~~L~~~G~~v~~~~iv~--Dd~~~I~~al~~a~~~~~DlVIttG 97 (185)
T 3rfq_A 29 VVGRALVVVVDDRTAHGDEDHSGPLVTELLTEAGFVVDGVVAVE--ADEVDIRNALNTAVIGGVDLVVSVG 97 (185)
T ss_dssp CCEEEEEEEECHHHHTTCCCSHHHHHHHHHHHTTEEEEEEEEEC--SCHHHHHHHHHHHHHTTCSEEEEES
T ss_pred CCCEEEEEEECcccCCCCcCcHHHHHHHHHHHCCCEEEEEEEeC--CCHHHHHHHHHHHHhCCCCEEEECC
Confidence 34567888764331 23446778889999999998887777 4667788888876546789999875
No 310
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=47.90 E-value=18 Score=36.88 Aligned_cols=80 Identities=6% Similarity=-0.125 Sum_probs=55.8
Q ss_pred CCeEEEEEEEe--CCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcChhhHHHHHHH
Q 002267 182 GWREVIAIFVD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSV 259 (945)
Q Consensus 182 ~w~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~~~~~~~~~~ 259 (945)
.-+.|+++..+ +.|.......+++++++.|..+.....- .+.......++.+...++|.||+..... ....++.
T Consensus 7 ~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~l~~~~vdgiIi~~~~~-~~~~~~~ 82 (291)
T 3egc_A 7 RSNVVGLIVSDIENVFFAEVASGVESEARHKGYSVLLANTA---EDIVREREAVGQFFERRVDGLILAPSEG-EHDYLRT 82 (291)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECT---TCHHHHHHHHHHHHHTTCSEEEECCCSS-CCHHHHH
T ss_pred CCcEEEEEECCCcchHHHHHHHHHHHHHHHCCCEEEEEeCC---CCHHHHHHHHHHHHHCCCCEEEEeCCCC-ChHHHHH
Confidence 44678888864 5677788899999999999988754321 2445556778888888999999876543 3345555
Q ss_pred HHhCCC
Q 002267 260 AKSLGM 265 (945)
Q Consensus 260 a~~~g~ 265 (945)
+.+.|+
T Consensus 83 ~~~~~i 88 (291)
T 3egc_A 83 ELPKTF 88 (291)
T ss_dssp SSCTTS
T ss_pred hhccCC
Confidence 555554
No 311
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=47.65 E-value=36 Score=35.49 Aligned_cols=84 Identities=11% Similarity=-0.090 Sum_probs=53.8
Q ss_pred HHHcCCeEEEEEEEe--CCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcChhhHHH
Q 002267 178 VEYYGWREVIAIFVD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLT 255 (945)
Q Consensus 178 l~~~~w~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~~~~~~ 255 (945)
++.-.-+.|+++..+ ++|.......+.+++++.|..+..... . .+.......++.+...++|.||+...... ..
T Consensus 58 l~~~~~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~ 133 (332)
T 2o20_A 58 LASKRTTTVGVILPTITSTYFAAITRGVDDIASMYKYNMILANS-D--NDVEKEEKVLETFLSKQVDGIVYMGSSLD-EK 133 (332)
T ss_dssp ----CCCEEEEEESCTTCHHHHHHHHHHHHHHHHTTCEEEEEEC-T--TCHHHHHHHHHHHHHTTCSEEEECSSCCC-HH
T ss_pred HhcCCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEEC-C--CChHHHHHHHHHHHhCCCCEEEEeCCCCC-HH
Confidence 333345689998864 667778889999999999998765422 1 23444556777777788999988753222 23
Q ss_pred HHHHHHhCCC
Q 002267 256 IFSVAKSLGM 265 (945)
Q Consensus 256 ~~~~a~~~g~ 265 (945)
.++.+.+.|+
T Consensus 134 ~~~~l~~~~i 143 (332)
T 2o20_A 134 IRTSLKNSRT 143 (332)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHhCCC
Confidence 4555555554
No 312
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=47.05 E-value=90 Score=28.54 Aligned_cols=85 Identities=15% Similarity=0.130 Sum_probs=56.9
Q ss_pred eEEEEEEEeCCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcC----hhhHHHHHHH
Q 002267 184 REVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN----PDTGLTIFSV 259 (945)
Q Consensus 184 ~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~----~~~~~~~~~~ 259 (945)
.+|.+.....+.-.-+...+...|+..|.+|.+--. ..+. ..++..+++.++++|.+++. ...+..++++
T Consensus 19 ~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~---~~p~---e~lv~aa~~~~~diV~lS~~~~~~~~~~~~~i~~ 92 (161)
T 2yxb_A 19 YKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGL---RQTP---EQVAMAAVQEDVDVIGVSILNGAHLHLMKRLMAK 92 (161)
T ss_dssp CEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCS---BCCH---HHHHHHHHHTTCSEEEEEESSSCHHHHHHHHHHH
T ss_pred CEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCC---CCCH---HHHHHHHHhcCCCEEEEEeechhhHHHHHHHHHH
Confidence 456555556666666778888899999999875322 1233 34556666789999999864 3456777788
Q ss_pred HHhCCCCCCCeEEEEe
Q 002267 260 AKSLGMTAGSYVWIAT 275 (945)
Q Consensus 260 a~~~g~~~~~~~wi~~ 275 (945)
+++.|.. .-.+|++.
T Consensus 93 L~~~g~~-~i~v~vGG 107 (161)
T 2yxb_A 93 LRELGAD-DIPVVLGG 107 (161)
T ss_dssp HHHTTCT-TSCEEEEE
T ss_pred HHhcCCC-CCEEEEeC
Confidence 8887752 23466664
No 313
>3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B
Probab=46.36 E-value=8.3 Score=39.21 Aligned_cols=80 Identities=16% Similarity=0.145 Sum_probs=48.8
Q ss_pred CceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHHHHHHHHHcCcccEEEecE
Q 002267 485 MPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDI 564 (945)
Q Consensus 485 ~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~~ 564 (945)
++|+||+... ....+..+++..+.+..+ .+++++... . .+.++.+|++|+++...
T Consensus 91 ~~l~Ig~~~~--------------~~~~~l~~~l~~f~~~~P-~v~i~~~~~------~----~~~~l~~~~~Dl~i~~~ 145 (291)
T 3szp_A 91 GRIRISAPSN--------------LTKRMMMPMFNAFMEKYP-DIHIELMMS------N----QADDLDPTEWDVIFRVG 145 (291)
T ss_dssp EEEEEEEETT--------------THHHHTHHHHHHHHHHCT-TEEEEEEEE------C----SCSCCCGGGCSEEEEES
T ss_pred eEEEEeccHH--------------HHHHHHHHHHHHHHHHCC-CeEEEEEEe------c----CccCccccCceEEEEec
Confidence 4699998422 112456778888888775 345555531 1 13467889999998643
Q ss_pred EEecCcceeEEecccccccceEEEEEccC
Q 002267 565 TIVTNRTKLVDFTQPYMESGLVVVAPVQK 593 (945)
Q Consensus 565 ~~t~~r~~~~dfs~p~~~~~~~~vv~~~~ 593 (945)
.... ..+. ..|+....++++++...
T Consensus 146 ~~~~---~~l~-~~~l~~~~~~~v~~~~~ 170 (291)
T 3szp_A 146 PQRD---SSLI-ARKIGEVKDILVASPQY 170 (291)
T ss_dssp CCCC---TTCE-EEEEEEECEEEEECHHH
T ss_pred CCCC---CCee-EEEecccceEEEECHHH
Confidence 2221 1222 45677788888887654
No 314
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=46.12 E-value=33 Score=34.51 Aligned_cols=77 Identities=5% Similarity=-0.091 Sum_probs=53.7
Q ss_pred CeEEEEEEEe--CCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcChhhHHHHHH-H
Q 002267 183 WREVIAIFVD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFS-V 259 (945)
Q Consensus 183 w~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~~~~~~~~~-~ 259 (945)
-+.|+++..+ ++|.....+.+.+++++.|..+.....- .+.......++.+...++|.||+.... ...++ .
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~---~~~~~~~~~~~~l~~~~~dgiIi~~~~---~~~~~~~ 81 (277)
T 3e61_A 8 SKLIGLLLPDMSNPFFTLIARGVEDVALAHGYQVLIGNSD---NDIKKAQGYLATFVSHNCTGMISTAFN---ENIIENT 81 (277)
T ss_dssp --CEEEEESCTTSHHHHHHHHHHHHHHHHTTCCEEEEECT---TCHHHHHHHHHHHHHTTCSEEEECGGG---HHHHHHH
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC---CCHHHHHHHHHHHHhCCCCEEEEecCC---hHHHHHH
Confidence 3578888764 6677888999999999999987653221 244555677888888899999997632 33466 6
Q ss_pred HHhCCC
Q 002267 260 AKSLGM 265 (945)
Q Consensus 260 a~~~g~ 265 (945)
+.+.|+
T Consensus 82 l~~~~i 87 (277)
T 3e61_A 82 LTDHHI 87 (277)
T ss_dssp HHHC-C
T ss_pred HHcCCC
Confidence 777665
No 315
>3muq_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.05A {Vibrio parahaemolyticus}
Probab=45.11 E-value=9.6 Score=37.84 Aligned_cols=75 Identities=11% Similarity=0.001 Sum_probs=52.0
Q ss_pred eeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHHHHHHHHHcCcccEEEecEEEecCcc---eeEEecccccccceEE
Q 002267 511 KGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDITIVTNRT---KLVDFTQPYMESGLVV 587 (945)
Q Consensus 511 ~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~~~~t~~r~---~~~dfs~p~~~~~~~~ 587 (945)
.|+.-+|+..+.++.|.++.+.+ +.-..+++++.+|.+|+++..-....+.. ....-..|+....+++
T Consensus 18 ~~ll~~L~~~Fek~~gv~V~~~~---------~gSg~ll~qi~~G~aDv~isa~~~~~~~l~~~g~~~~~~~~a~N~lVl 88 (237)
T 3muq_A 18 SGLLDYLLPQFEKDTGYKVDVIA---------AGTGKALKMGENGDVDLVMTHAPKAEGTFVEKGYGVLPRKLMYNDFVI 88 (237)
T ss_dssp HTHHHHHHHHHHHHHCCEEEEEE---------ECHHHHHHHHHTTSSSEEEECCHHHHHHHHHTTSEEEEEEEEEEEEEE
T ss_pred hhHHHHHHHHHHHHhCceEEEEE---------cChHHHHHHHhcCCCCEEEecCchhHHHHHhcCCccccEEEEeCCEEE
Confidence 46677889999888886655554 34667899999999999875433222211 1122347888899999
Q ss_pred EEEccCC
Q 002267 588 VAPVQKL 594 (945)
Q Consensus 588 vv~~~~~ 594 (945)
++|+.++
T Consensus 89 V~P~~~P 95 (237)
T 3muq_A 89 VGPKADP 95 (237)
T ss_dssp EECTTCT
T ss_pred EEeCCCh
Confidence 9998764
No 316
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=44.99 E-value=48 Score=30.54 Aligned_cols=62 Identities=11% Similarity=0.025 Sum_probs=45.2
Q ss_pred EEEEEEEeCC--cc---cchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccC-CceEEEEEc
Q 002267 185 EVIAIFVDDD--YG---RNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLM-ESRVFVVHV 248 (945)
Q Consensus 185 ~v~ii~~d~~--~g---~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~-~~~vivl~~ 248 (945)
++++|...|+ .| ......+.+.+++.|.++.....++ .+.+.+...+++..+. ++|+||..+
T Consensus 3 ~v~Ii~tGdEl~~G~i~D~n~~~l~~~l~~~G~~v~~~~iv~--Dd~~~i~~~l~~~~~~~~~DlVittG 70 (164)
T 2is8_A 3 RVGILTVSDKGFRGERQDTTHLAIREVLAGGPFEVAAYELVP--DEPPMIKKVLRLWADREGLDLILTNG 70 (164)
T ss_dssp EEEEEEECHHHHHTSSCCCHHHHHHHHHTTSSEEEEEEEEEC--SCHHHHHHHHHHHHHTSCCSEEEEES
T ss_pred EEEEEEEcCcccCCCcccchHHHHHHHHHHCCCeEeEEEEcC--CCHHHHHHHHHHHHhcCCCCEEEEcC
Confidence 5677765443 12 2345678889999999998877777 4667888888887654 789999875
No 317
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=44.70 E-value=39 Score=34.76 Aligned_cols=79 Identities=11% Similarity=0.003 Sum_probs=53.1
Q ss_pred EEEEEEEeCC-cccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcC-hhhHHHHHHHHHh
Q 002267 185 EVIAIFVDDD-YGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN-PDTGLTIFSVAKS 262 (945)
Q Consensus 185 ~v~ii~~d~~-~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~-~~~~~~~~~~a~~ 262 (945)
+|+++..+.. |.....+.+++++++.|.++.....- ..+.......++.+...++|.||+... .......++.+.+
T Consensus 3 ~Ig~i~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~--~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~ 80 (313)
T 2h3h_A 3 TIGVIGKSVHPYWSQVEQGVKAAGKALGVDTKFFVPQ--KEDINAQLQMLESFIAEGVNGIAIAPSDPTAVIPTIKKALE 80 (313)
T ss_dssp EEEEECSCSSHHHHHHHHHHHHHHHHHTCEEEEECCS--SSCHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHHHH
T ss_pred EEEEEeCCCcHHHHHHHHHHHHHHHHcCCEEEEECCC--CCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHH
Confidence 5777765421 77778889999999999987654211 124444556777777788999988643 3334456777777
Q ss_pred CCC
Q 002267 263 LGM 265 (945)
Q Consensus 263 ~g~ 265 (945)
.|+
T Consensus 81 ~~i 83 (313)
T 2h3h_A 81 MGI 83 (313)
T ss_dssp TTC
T ss_pred CCC
Confidence 665
No 318
>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} SCOP: c.94.1.1
Probab=44.67 E-value=1.3e+02 Score=30.69 Aligned_cols=188 Identities=6% Similarity=-0.029 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCCccEEEEEcCCCCCCCCHHHHHHHHHcCcccEEEecEEEecCcceeEEeccccc----ccceEEEEE
Q 002267 515 IDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDITIVTNRTKLVDFTQPYM----ESGLVVVAP 590 (945)
Q Consensus 515 ~dll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~~~~t~~r~~~~dfs~p~~----~~~~~~vv~ 590 (945)
+..++...+..|++ ++++.+ .+|......|..|++|+... ....|-..+. -..+..+..
T Consensus 53 ~~~~~~~~~~~G~~--Ve~~~f------~~~~~~~~AL~~G~iD~~~~---------~~~~~l~~~~~~~~g~~l~~v~~ 115 (295)
T 1p99_A 53 WEKVKELAKKDDID--VEIKHF------SDYNLPNKALNDGDIDMNAF---------QHFAFLDQYKKAHKGTKISALST 115 (295)
T ss_dssp HHHHHHHHGGGTCC--EEEEEC------SSTTSHHHHHHTTSSSEEEE---------EEHHHHHHHHHHCTTCCEEEEEE
T ss_pred HHHHHHHHHHcCCe--EEEEEe------CChHHHHHHHHcCCCCEEcc---------CCHHHHHHHHHhcCCCCEEEEEe
Q ss_pred ccCCCCCceeeeccCchhhHHHHHHHHHHHHhhhheeecccCCCCCCCCccchhhHHHHHHHHhhccccCcccccchhhH
Q 002267 591 VQKLKSSPWAFLKPFTIPMWLVTGGFFLFVGAVVWILEHRFNNEFRGPPSQQLVTIFWFSFSTMFFSHRENTVSSLGRVV 670 (945)
Q Consensus 591 ~~~~~~~~~~fl~PF~~~~W~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~s~~~R~~ 670 (945)
..........
T Consensus 116 ~~~~p~g~ys---------------------------------------------------------------------- 125 (295)
T 1p99_A 116 TVLAPLGIYS---------------------------------------------------------------------- 125 (295)
T ss_dssp EEECCCEEEC----------------------------------------------------------------------
T ss_pred eccccceeec----------------------------------------------------------------------
Q ss_pred HHHHHHHHHhhhhhhhhhhheeeeeccccCCCCChHHh-hcCCCCeEEeeCchHHHHHHHhh------------------
Q 002267 671 LIVWLFVVLIINSSYTASLTSILTVQQLTSQIEGIDSL-ISSTEPIGVQDGSFAWNYLVDEL------------------ 731 (945)
Q Consensus 671 ~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~i~~~~dL-~~~~~~v~~~~~s~~~~~l~~~~------------------ 731 (945)
..|++++|| . |.+|++.+++.....+..-+
T Consensus 126 -----------------------------~~iksl~DL~~--Gk~IAip~~~s~~~~~l~lL~~~Gli~l~~~~~~~~t~ 174 (295)
T 1p99_A 126 -----------------------------DKIKDVKKVKD--GAKVVIPNDVSNQARALKLLEAAGLIKLKKDFGLAGTV 174 (295)
T ss_dssp -----------------------------SSCSCGGGCCT--TCEEEEECSHHHHHHHHHHHHHTTSCEECTTCCTTCCG
T ss_pred -----------------------------CCCCChHHcCC--CCEEEecCCCcHHHHHHHHHHHCCCccccCCCCCcCCh
Q ss_pred -----ccccccceecCCHHHHHHHHhcCCCCCceeEEecchhhHHHHhccCCccEEEeC-ccc--c-ccceEEEecCCCc
Q 002267 732 -----KIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVG-QEF--T-KSGWGFAFQRDSP 802 (945)
Q Consensus 732 -----~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~--~-~~~~~~~~~k~sp 802 (945)
+...-++++. +..+...++ +.+|+.+...++...--.+...+..... ..- . .+.-.++++++.-
T Consensus 175 ~dI~~np~~v~~v~~-~~~~~~~al------~~VDaa~i~~~~a~~ag~~~~~~~i~~e~~~~~~~~~~~n~ivvr~~~~ 247 (295)
T 1p99_A 175 KDITSNPKHLKITAV-DAQQTARAL------SDVDIAVINNGVATKAGKDPKNDPIFLEKSNSDAVKPYINIVAVNDKDL 247 (295)
T ss_dssp GGEEECTTCCEEEEE-CGGGTTGGG------GTSSEEEECHHHHHHTTCCTTTSCSEECCCSSGGGGGGEEEEEEEGGGT
T ss_pred hhhhcCCCceEEEEc-CHHHHHHHh------hcCCEEEECcHHHHHcCCCcccceEEecCCcccCCCceeEEEEEeCCcc
Q ss_pred chHHHHHHHHhccccccHHHHHHHh
Q 002267 803 LAIDLSTAILQLSENGDLQKIHNKW 827 (945)
Q Consensus 803 l~~~i~~~i~~l~e~G~~~~i~~~w 827 (945)
-.+.+.+.+..+.+....+.|.++|
T Consensus 248 ~~~~vk~l~~a~~s~ev~~~i~~~~ 272 (295)
T 1p99_A 248 DNKTYAKIVELYHSKEAQKALQEDV 272 (295)
T ss_dssp TCHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHCCHHHHHHHHHhc
No 319
>4gd5_A Phosphate ABC transporter, phosphate-binding PROT; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.70A {Clostridium perfringens}
Probab=44.29 E-value=28 Score=35.38 Aligned_cols=48 Identities=19% Similarity=0.342 Sum_probs=21.1
Q ss_pred cCCCccccCCCCCceEEEEEEeccCCccccchHHHHHHHHHHHhcCCCCCCCcEEEEEE
Q 002267 36 TGNGNVSSSSSRPSSVRIGALFTYDSVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVI 94 (945)
Q Consensus 36 ~~~~~~~~~~~~~~~i~IG~l~~l~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~ 94 (945)
++|++..+.+...++|+|.+-.. ....++...+++.+.. ||.+|++..
T Consensus 24 ~gc~~~~~~~~~~~~i~i~GSss--------~~p~~~~~a~~f~~~~---p~v~v~~~~ 71 (279)
T 4gd5_A 24 VGCNSGGSEAKSTNSVSISGSTS--------VGPVMEAEAEAFKTKK---PDVSIEINQ 71 (279)
T ss_dssp -------------CEEEEEECTT--------THHHHHHHHHHHHHHS---TTCEEEEEE
T ss_pred HHccCCCCcccCCCeEEEEEeCc--------HHHHHHHHHHHHHHHC---CCceEEEee
Confidence 34544444445567788765322 2345555666666553 577888765
No 320
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=44.19 E-value=32 Score=34.45 Aligned_cols=78 Identities=10% Similarity=0.001 Sum_probs=52.4
Q ss_pred eEEEEEEEe--CCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcChhhHHHHHHHHH
Q 002267 184 REVIAIFVD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAK 261 (945)
Q Consensus 184 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~~~~~~~~~~a~ 261 (945)
+.|+++..+ ++|.......+.+++++.|..+..... ..+.......++.+...++|.||+...... ...++.+.
T Consensus 4 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgii~~~~~~~-~~~~~~l~ 79 (275)
T 3d8u_A 4 YSIALIIPSLFEKACAHFLPSFQQALNKAGYQLLLGYS---DYSIEQEEKLLSTFLESRPAGVVLFGSEHS-QRTHQLLE 79 (275)
T ss_dssp CEEEEEESCSSCHHHHHHHHHHHHHHHHTSCEECCEEC---TTCHHHHHHHHHHHHTSCCCCEEEESSCCC-HHHHHHHH
T ss_pred eEEEEEeCCCccccHHHHHHHHHHHHHHCCCEEEEEcC---CCCHHHHHHHHHHHHhcCCCEEEEeCCCCC-HHHHHHHH
Confidence 468888754 567777889999999999988754321 123444556777887788998888754322 24566666
Q ss_pred hCCC
Q 002267 262 SLGM 265 (945)
Q Consensus 262 ~~g~ 265 (945)
+.|.
T Consensus 80 ~~~i 83 (275)
T 3d8u_A 80 ASNT 83 (275)
T ss_dssp HHTC
T ss_pred hCCC
Confidence 6564
No 321
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=43.36 E-value=40 Score=35.20 Aligned_cols=82 Identities=12% Similarity=0.104 Sum_probs=52.7
Q ss_pred eEEEEEEEe---CCcccchHHHHHHHHhhcCcEEEEeecCCC-CCChHHHHHHHHhhccCCceEEEEEcChhhHHHHHHH
Q 002267 184 REVIAIFVD---DDYGRNGISVLGDALSKKRAKISYKAPFSP-GASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSV 259 (945)
Q Consensus 184 ~~v~ii~~d---~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~-~~~~~d~~~~l~~l~~~~~~vivl~~~~~~~~~~~~~ 259 (945)
+.|+++..+ ++|.......+.+++++.|..+.....-.. ..+...-...++.+...++|.||+..........++.
T Consensus 44 ~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~ 123 (342)
T 1jx6_A 44 IKISVVYPGQQVSDYWVRNIASFEKRLYKLNINYQLNQVFTRPNADIKQQSLSLMEALKSKSDYLIFTLDTTRHRKFVEH 123 (342)
T ss_dssp EEEEEEECCCSSCCHHHHHHHHHHHHHHHTTCCEEEEEEECCTTCCHHHHHHHHHHHHHTTCSEEEECCSSSTTHHHHHH
T ss_pred eEEEEEecCCcccHHHHHHHHHHHHHHHHcCCeEEEEecCCCCccCHHHHHHHHHHHHhcCCCEEEEeCChHhHHHHHHH
Confidence 578888754 567777889999999999986654321111 0133444566777777889999984433333455666
Q ss_pred HHhCCC
Q 002267 260 AKSLGM 265 (945)
Q Consensus 260 a~~~g~ 265 (945)
+.+.|.
T Consensus 124 ~~~~~i 129 (342)
T 1jx6_A 124 VLDSTN 129 (342)
T ss_dssp HHHHCS
T ss_pred HHHcCC
Confidence 766564
No 322
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=43.18 E-value=34 Score=35.65 Aligned_cols=79 Identities=10% Similarity=-0.062 Sum_probs=53.9
Q ss_pred eEEEEEEEe--CCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCC--ceEEEEEcChh-hHHHHHH
Q 002267 184 REVIAIFVD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLME--SRVFVVHVNPD-TGLTIFS 258 (945)
Q Consensus 184 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~--~~vivl~~~~~-~~~~~~~ 258 (945)
++|+++..+ ++|.......+++++++.|.++..... . .+.......++.+...+ +|.||+..... .....++
T Consensus 6 ~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~~-~--~~~~~~~~~i~~l~~~~~~vdgiIi~~~~~~~~~~~~~ 82 (332)
T 2rjo_A 6 TTLACSFRSLTNPYYTAFNKGAQSFAKSVGLPYVPLTT-E--GSSEKGIADIRALLQKTGGNLVLNVDPNDSADARVIVE 82 (332)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCCEEEEEC-T--TCHHHHHHHHHHHHHHTTTCEEEEECCSSHHHHHHHHH
T ss_pred cEEEEEecCCCcHHHHHHHHHHHHHHHHcCCEEEEecC-C--CCHHHHHHHHHHHHHCCCCCCEEEEeCCCHHHHHHHHH
Confidence 578888753 567778889999999999988765432 1 23444456677777677 99998875433 3345677
Q ss_pred HHHhCCC
Q 002267 259 VAKSLGM 265 (945)
Q Consensus 259 ~a~~~g~ 265 (945)
.+.+.|+
T Consensus 83 ~~~~~~i 89 (332)
T 2rjo_A 83 ACSKAGA 89 (332)
T ss_dssp HHHHHTC
T ss_pred HHHHCCC
Confidence 7776664
No 323
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=42.68 E-value=61 Score=33.51 Aligned_cols=80 Identities=8% Similarity=-0.046 Sum_probs=53.6
Q ss_pred CeEEEEEEEe-CCcccchHHHHHHHHhhc-CcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcChh-hHHHHHHH
Q 002267 183 WREVIAIFVD-DDYGRNGISVLGDALSKK-RAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPD-TGLTIFSV 259 (945)
Q Consensus 183 w~~v~ii~~d-~~~g~~~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~~-~~~~~~~~ 259 (945)
-+.|+++..+ ++|.......+.+++++. |.++..... . .+.......++.+...++|.||+..... .....++.
T Consensus 6 ~~~Igvi~~~~~~~~~~~~~gi~~~a~~~~g~~l~i~~~-~--~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~ 82 (325)
T 2x7x_A 6 HFRIGVAQCSDDSWRHKMNDEILREAMFYNGVSVEIRSA-G--DDNSKQAEDVHYFMDEGVDLLIISANEAAPMTPIVEE 82 (325)
T ss_dssp CCEEEEEESCCSHHHHHHHHHHHHHHTTSSSCEEEEEEC-T--TCHHHHHHHHHHHHHTTCSEEEECCSSHHHHHHHHHH
T ss_pred CeEEEEEecCCCHHHHHHHHHHHHHHHHcCCcEEEEeCC-C--CCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHH
Confidence 4578888754 445566778888999898 988765432 1 2344445667777778899999875443 33456777
Q ss_pred HHhCCC
Q 002267 260 AKSLGM 265 (945)
Q Consensus 260 a~~~g~ 265 (945)
+.+.|+
T Consensus 83 ~~~~~i 88 (325)
T 2x7x_A 83 AYQKGI 88 (325)
T ss_dssp HHHTTC
T ss_pred HHHCCC
Confidence 777664
No 324
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=42.59 E-value=45 Score=34.64 Aligned_cols=79 Identities=10% Similarity=-0.067 Sum_probs=53.5
Q ss_pred CeEEEEEEE--eCCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcChhhHHHHHHHH
Q 002267 183 WREVIAIFV--DDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVA 260 (945)
Q Consensus 183 w~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~~~~~~~~~~a 260 (945)
-+.|+++.. +++|.......+.+++++.|..+..... . .+.......++.+...++|.||+....... ..++.+
T Consensus 60 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~~~~~l 135 (332)
T 2hsg_A 60 TTTVGVIIPDISNIFYAELARGIEDIATMYKYNIILSNS-D--QNQDKELHLLNNMLGKQVDGIIFMSGNVTE-EHVEEL 135 (332)
T ss_dssp CCEEEEEEC--CCSHHHHHHHHHHHHHHHHTCEEEEEEC-C--SHHHHHHHHHHHTSCCSSCCEEECCSSCCH-HHHHHH
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEeC-C--CChHHHHHHHHHHHhCCCcEEEEecCCCCH-HHHHHH
Confidence 467888875 3678888899999999999998765421 1 223344567788888889988887543222 455566
Q ss_pred HhCCC
Q 002267 261 KSLGM 265 (945)
Q Consensus 261 ~~~g~ 265 (945)
.+.|+
T Consensus 136 ~~~~i 140 (332)
T 2hsg_A 136 KKSPV 140 (332)
T ss_dssp TTSSS
T ss_pred HhCCC
Confidence 55553
No 325
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=42.47 E-value=73 Score=31.63 Aligned_cols=93 Identities=10% Similarity=0.019 Sum_probs=66.4
Q ss_pred HHHHHHHHHcCCeEEEEEEEe------------CCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccC
Q 002267 172 HAVADLVEYYGWREVIAIFVD------------DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLM 239 (945)
Q Consensus 172 ~ai~~~l~~~~w~~v~ii~~d------------~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~ 239 (945)
....+.++..|.+.|=+...+ ........+.+++.+++.|+++....... .....++...+...+..
T Consensus 25 ~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~-~~~~~~~~~~i~~A~~l 103 (262)
T 3p6l_A 25 TEALDKTQELGLKYIEIYPGHKLGGKWGDKVFDFNLDAQTQKEIKELAASKGIKIVGTGVYV-AEKSSDWEKMFKFAKAM 103 (262)
T ss_dssp HHHHHHHHHTTCCEEEECTTEECCGGGTTCEESTTCCHHHHHHHHHHHHHTTCEEEEEEEEC-CSSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCEEeecCCcccccccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccC-CccHHHHHHHHHHHHHc
Confidence 456667788899888775322 11223457899999999999987655432 23556788888888888
Q ss_pred CceEEEEEcChhhHHHHHHHHHhCCC
Q 002267 240 ESRVFVVHVNPDTGLTIFSVAKSLGM 265 (945)
Q Consensus 240 ~~~vivl~~~~~~~~~~~~~a~~~g~ 265 (945)
+++.|+++...+....+...|++.|+
T Consensus 104 Ga~~v~~~~~~~~~~~l~~~a~~~gv 129 (262)
T 3p6l_A 104 DLEFITCEPALSDWDLVEKLSKQYNI 129 (262)
T ss_dssp TCSEEEECCCGGGHHHHHHHHHHHTC
T ss_pred CCCEEEecCCHHHHHHHHHHHHHhCC
Confidence 99999988766666677777777665
No 326
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=42.32 E-value=31 Score=35.07 Aligned_cols=80 Identities=5% Similarity=-0.150 Sum_probs=52.4
Q ss_pred CCeEEEEEEEe--CCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHH---HHHhhccCCceEEEEEcChhhHHHH
Q 002267 182 GWREVIAIFVD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINS---LLVGANLMESRVFVVHVNPDTGLTI 256 (945)
Q Consensus 182 ~w~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~---~l~~l~~~~~~vivl~~~~~~~~~~ 256 (945)
.-+.|+++..+ ++|.......+.+++++.|..+..... . .+...... .++.+...++|.||+...... ...
T Consensus 7 ~~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~--~~~~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~ 82 (290)
T 2rgy_A 7 QLGIIGLFVPTFFGSYYGTILKQTDLELRAVHRHVVVATG-C--GESTPREQALEAVRFLIGRDCDGVVVISHDLH-DED 82 (290)
T ss_dssp -CCEEEEECSCSCSHHHHHHHHHHHHHHHHTTCEEEEECC-C--SSSCHHHHHHHHHHHHHHTTCSEEEECCSSSC-HHH
T ss_pred CCCeEEEEeCCCCCchHHHHHHHHHHHHHHCCCEEEEEeC-C--CchhhhhhHHHHHHHHHhcCccEEEEecCCCC-HHH
Confidence 34578888753 567778889999999999998765322 1 12233344 677777788999998754332 345
Q ss_pred HHHHHhCCC
Q 002267 257 FSVAKSLGM 265 (945)
Q Consensus 257 ~~~a~~~g~ 265 (945)
++.+.+.|+
T Consensus 83 ~~~l~~~~i 91 (290)
T 2rgy_A 83 LDELHRMHP 91 (290)
T ss_dssp HHHHHHHCS
T ss_pred HHHHhhcCC
Confidence 566666564
No 327
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=41.86 E-value=78 Score=28.01 Aligned_cols=85 Identities=9% Similarity=0.153 Sum_probs=54.5
Q ss_pred EEEEEEEeCCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcChh----hHHHHHHHH
Q 002267 185 EVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPD----TGLTIFSVA 260 (945)
Q Consensus 185 ~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~~----~~~~~~~~a 260 (945)
+|.+.....+.-.-+..-+...|+..|.+|.+--.. .+.+ .+++.+++.++++|.+++... .+..++++.
T Consensus 5 ~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~---~p~e---~~v~~a~~~~~d~v~lS~~~~~~~~~~~~~i~~l 78 (137)
T 1ccw_A 5 TIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVL---SPQE---LFIKAAIETKADAILVSSLYGQGEIDCKGLRQKC 78 (137)
T ss_dssp EEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEE---ECHH---HHHHHHHHHTCSEEEEEECSSTHHHHHTTHHHHH
T ss_pred EEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCCC---CCHH---HHHHHHHhcCCCEEEEEecCcCcHHHHHHHHHHH
Confidence 455555555555566777888999999999865432 2333 445555567899999986432 355667778
Q ss_pred HhCCCCCCCeEEEEeC
Q 002267 261 KSLGMTAGSYVWIATD 276 (945)
Q Consensus 261 ~~~g~~~~~~~wi~~~ 276 (945)
++.|.. .-.+|++..
T Consensus 79 ~~~g~~-~i~v~vGG~ 93 (137)
T 1ccw_A 79 DEAGLE-GILLYVGGN 93 (137)
T ss_dssp HHTTCT-TCEEEEEES
T ss_pred HhcCCC-CCEEEEECC
Confidence 877753 234566653
No 328
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=41.21 E-value=38 Score=34.35 Aligned_cols=81 Identities=4% Similarity=-0.021 Sum_probs=52.5
Q ss_pred cCCeEEEEEEEe--C--CcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcChhhHHHH
Q 002267 181 YGWREVIAIFVD--D--DYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTI 256 (945)
Q Consensus 181 ~~w~~v~ii~~d--~--~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~~~~~~~ 256 (945)
-.-+.|+++..+ + +|.......+.+++++.|..+.....- .+.......+..+...++|.||+...... ...
T Consensus 6 ~~s~~Igvv~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~ 81 (288)
T 3gv0_A 6 GKTNVIALVLSVDEELMGFTSQMVFGITEVLSTTQYHLVVTPHI---HAKDSMVPIRYILETGSADGVIISKIEPN-DPR 81 (288)
T ss_dssp -CCCEEEEECBCCCCSSCHHHHHHHHHHHHHTTSSCEEEECCBS---SGGGTTHHHHHHHHHTCCSEEEEESCCTT-CHH
T ss_pred CCCCEEEEEecCCccccHHHHHHHHHHHHHHHHcCCEEEEecCC---cchhHHHHHHHHHHcCCccEEEEecCCCC-cHH
Confidence 345778888864 2 677888999999999999987754222 12222344445555678999988753322 245
Q ss_pred HHHHHhCCC
Q 002267 257 FSVAKSLGM 265 (945)
Q Consensus 257 ~~~a~~~g~ 265 (945)
++.+.+.|+
T Consensus 82 ~~~l~~~~i 90 (288)
T 3gv0_A 82 VRFMTERNM 90 (288)
T ss_dssp HHHHHHTTC
T ss_pred HHHHhhCCC
Confidence 666777665
No 329
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=41.07 E-value=68 Score=32.28 Aligned_cols=79 Identities=5% Similarity=-0.096 Sum_probs=52.9
Q ss_pred CCeEEEEEEEe--CCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcChhhHHHHHHH
Q 002267 182 GWREVIAIFVD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSV 259 (945)
Q Consensus 182 ~w~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~~~~~~~~~~ 259 (945)
.-++|+++..+ ++|.....+.+.+++++.|..+..... . .+.......++.+...++|.||+....... ..++.
T Consensus 7 ~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~~~~~ 82 (285)
T 3c3k_A 7 KTGMLLVMVSNIANPFCAAVVKGIEKTAEKNGYRILLCNT-E--SDLARSRSCLTLLSGKMVDGVITMDALSEL-PELQN 82 (285)
T ss_dssp CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC-T--TCHHHHHHHTHHHHTTCCSEEEECCCGGGH-HHHHH
T ss_pred CCCEEEEEeCCCCCchHHHHHHHHHHHHHHcCCEEEEEeC-C--CCHHHHHHHHHHHHhCCCCEEEEeCCCCCh-HHHHH
Confidence 34678888864 667778889999999999998765432 1 233444566777777889999987543222 34455
Q ss_pred HHhCCC
Q 002267 260 AKSLGM 265 (945)
Q Consensus 260 a~~~g~ 265 (945)
+. .|+
T Consensus 83 l~-~~i 87 (285)
T 3c3k_A 83 II-GAF 87 (285)
T ss_dssp HH-TTS
T ss_pred Hh-cCC
Confidence 55 553
No 330
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=41.00 E-value=17 Score=37.14 Aligned_cols=58 Identities=10% Similarity=0.098 Sum_probs=40.9
Q ss_pred ccchhhHHHHHHHHhhccccC----ccccc----chhhHHHHHHHHHHhhhhhhhhhhheeeeecc
Q 002267 640 SQQLVTIFWFSFSTMFFSHRE----NTVSS----LGRVVLIVWLFVVLIINSSYTASLTSILTVQQ 697 (945)
Q Consensus 640 ~~~~~~~~~~~~~~l~~~~~~----~p~s~----~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~ 697 (945)
..++.+++|+.+.++...+.. .|... ..+++..+.++.++++.+.++|-+.+-+....
T Consensus 178 F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~ 243 (285)
T 3rvy_A 178 FGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILN 243 (285)
T ss_dssp HSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999877533 24333 23666666777789999999999998876644
No 331
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=40.95 E-value=42 Score=35.29 Aligned_cols=79 Identities=10% Similarity=0.033 Sum_probs=52.6
Q ss_pred CeEEEEEEEe--CCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcChhhHHHHHHHH
Q 002267 183 WREVIAIFVD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVA 260 (945)
Q Consensus 183 w~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~~~~~~~~~~a 260 (945)
-+.|+++..+ ++|.....+.+.+++++.|..+..... . .+.......++.+...++|.||+...... ...++.+
T Consensus 66 s~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~l 141 (348)
T 3bil_A 66 SNTIGVIVPSLINHYFAAMVTEIQSTASKAGLATIITNS-N--EDATTMSGSLEFLTSHGVDGIICVPNEEC-ANQLEDL 141 (348)
T ss_dssp --CEEEEESCSSSHHHHHHHHHHHHHHHHTTCCEEEEEC-T--TCHHHHHHHHHHHHHTTCSCEEECCCGGG-HHHHHHH
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCEEEEEeC-C--CCHHHHHHHHHHHHhCCCCEEEEeCCCCC-hHHHHHH
Confidence 3568888754 667778889999999999988765432 1 23444556777777788999888754433 2456666
Q ss_pred HhCCC
Q 002267 261 KSLGM 265 (945)
Q Consensus 261 ~~~g~ 265 (945)
.+.|+
T Consensus 142 ~~~~i 146 (348)
T 3bil_A 142 QKQGM 146 (348)
T ss_dssp HHC-C
T ss_pred HhCCC
Confidence 66664
No 332
>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}
Probab=40.86 E-value=38 Score=34.67 Aligned_cols=79 Identities=9% Similarity=-0.037 Sum_probs=53.3
Q ss_pred eEEEEEEEe--CCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcChhh-HHHHHHHH
Q 002267 184 REVIAIFVD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDT-GLTIFSVA 260 (945)
Q Consensus 184 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~~~-~~~~~~~a 260 (945)
.+|+++..+ +.|.......+++++++.|..+..... . .+.......++.+...++|.||+...... ....++.+
T Consensus 3 ~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~l~~~~~-~--~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~ 79 (306)
T 2vk2_A 3 LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADG-Q--QKQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEA 79 (306)
T ss_dssp CEEEEEECCCCSHHHHHHHHHHHHHHHHHTCEEEEEEC-T--TCHHHHHHHHHHHHHHTCSEEEECCSSSSSCHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHHcCCEEEEeCC-C--CCHHHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHHHH
Confidence 468888753 566777788899999999998765432 1 23444456677777778999988754332 24566677
Q ss_pred HhCCC
Q 002267 261 KSLGM 265 (945)
Q Consensus 261 ~~~g~ 265 (945)
.+.|+
T Consensus 80 ~~~~i 84 (306)
T 2vk2_A 80 KDAEI 84 (306)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 76664
No 333
>4euo_A ABC transporter, substrate binding protein (polya; class D of PBP, GABA-binding, transport protein; 1.28A {Agrobacterium tumefaciens} PDB: 4eq7_A
Probab=40.77 E-value=2.6e+02 Score=28.40 Aligned_cols=83 Identities=4% Similarity=-0.119 Sum_probs=48.0
Q ss_pred ceecCCHHHHHHHHhcCCCCCceeEEecchhhHHHHhccCCccEEEeCccccccceEEEecCCCcchHHHHHHHHhcccc
Q 002267 738 LVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTNCEFRTVGQEFTKSGWGFAFQRDSPLAIDLSTAILQLSEN 817 (945)
Q Consensus 738 ~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~spl~~~i~~~i~~l~e~ 817 (945)
+..+.+..+..+.+.+ |++++.+.-.......... ..++.++-+.......+++++++++-.+.--+.|.-|.+.
T Consensus 176 ~~~~~~~~~~~~~~~~----G~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~i~k~s~~~e~A~~fi~fl~s~ 250 (320)
T 4euo_A 176 IIWWSGGAQSQQLIAS----AEAPFGSVWNGRMTALEQS-GVKVETSWAQNITAADSLVVPKGTKNKDAAMKFIALATSA 250 (320)
T ss_dssp EEEECSHHHHHHHHHT----TSSCEEEEEHHHHHHHHHT-TCCCEEEEEEEEEEEEEEECBTTCSCHHHHHHHHHHHTSH
T ss_pred eeEeCCCchHHHHHHc----CCEEEEEeecHHHHHHHhC-CCCeEEEecCceeecceEEEECCCCCHHHHHHHHHHHhCH
Confidence 3455677788889998 8888777654443333333 3333332222222334788999999766666666666554
Q ss_pred ccHHHHHH
Q 002267 818 GDLQKIHN 825 (945)
Q Consensus 818 G~~~~i~~ 825 (945)
.....+.+
T Consensus 251 e~q~~~~~ 258 (320)
T 4euo_A 251 QAQADMAT 258 (320)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 43334433
No 334
>3dnf_A ISPH, LYTB, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; trilobal strucure, open alpha/beta, iron, iron-sulfur, isopr biosynthesis; 1.65A {Aquifex aeolicus}
Probab=40.70 E-value=45 Score=33.93 Aligned_cols=52 Identities=23% Similarity=0.312 Sum_probs=42.5
Q ss_pred EEEecCCCChHHHHHHHHH-HHhc-CcEEEEccCChhHHHHHHHhhcccCccEE
Q 002267 92 FVIRDTNCSGFVGTMEALQ-LMEN-EVVAAIGPQSSGIAHVISHVVNELNVPLL 143 (945)
Q Consensus 92 l~~~D~~~~~~~a~~~a~~-li~~-~v~aiiGp~~s~~~~~va~~~~~~~iP~I 143 (945)
+...||=|+..+-.+.+.+ |..+ .+..|||+..|+.+.-+.+++...+.|..
T Consensus 186 ~~~~~tIC~AT~~RQ~av~~la~~~D~miVVGg~nSSNT~rL~eia~~~~~~ty 239 (297)
T 3dnf_A 186 VKVINTICNATSLRQESVKKLAPEVDVMIIIGGKNSGNTRRLYYISKELNPNTY 239 (297)
T ss_dssp EEEECCCCSHHHHHHHHHHHHGGGSSEEEEESCTTCHHHHHHHHHHHHHCSSEE
T ss_pred CCCCCCccHHHHHHHHHHHHHHhhCCEEEEECCCCCchhHHHHHHHHhcCCCEE
Confidence 3478999998888776654 4444 88999999999999999999999888754
No 335
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=40.61 E-value=60 Score=33.47 Aligned_cols=85 Identities=11% Similarity=0.128 Sum_probs=57.1
Q ss_pred CCCeEEe--eCchHHHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceeEEecch---------hhHHHHhccCCcc
Q 002267 712 TEPIGVQ--DGSFAWNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDEL---------PYIELFMSKTNCE 780 (945)
Q Consensus 712 ~~~v~~~--~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~---------~~~~~~~~~~~~~ 780 (945)
..+|+++ .|+|.+.-......-....++++.+.++++++|.+ |++|+.+... ..+..+ .+ +.+
T Consensus 6 ~~~VaylGp~GtfS~~Aa~~~~~~~~~~~~p~~s~~~vf~aV~~----g~~d~gVvPiENS~~G~V~~tlD~L-~~-~~~ 79 (313)
T 3mwb_A 6 AVTYTFLGPQGTFTEAALMQVPGAADATRIPCTNVNTALERVRA----GEADAAMVPIENSVEGGVTATLDAI-AT-GQE 79 (313)
T ss_dssp -CEEEEESSTTSHHHHHHTTSTTGGGSEEEEESSHHHHHHHHHT----TSCSEEEEEEESCTTCCHHHHHHHT-TS-SSC
T ss_pred ccEEEEECCCCcHHHHHHHHHhhcCCccEEecCCHHHHHHHHHc----CCCCeeEEEEeecCCCccHHHHHHh-hC-CCC
Confidence 4568887 68887776644322234567899999999999999 7877555431 122333 33 346
Q ss_pred EEEeCccccccceEEEecCCCc
Q 002267 781 FRTVGQEFTKSGWGFAFQRDSP 802 (945)
Q Consensus 781 ~~~~~~~~~~~~~~~~~~k~sp 802 (945)
+.++++.+.....++...+|..
T Consensus 80 l~IvgE~~l~I~h~Ll~~~g~~ 101 (313)
T 3mwb_A 80 LRIIREALVPITFVLVARPGVE 101 (313)
T ss_dssp CEEEEEEEEECCCEEEECTTCC
T ss_pred eEEEEEEEEeeeEEEEcCCCCC
Confidence 8999998888888887766644
No 336
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=40.41 E-value=30 Score=37.55 Aligned_cols=83 Identities=8% Similarity=0.071 Sum_probs=56.1
Q ss_pred HHHHHHHcCCeEEEEEEEeCCccc-chHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcC--h
Q 002267 174 VADLVEYYGWREVIAIFVDDDYGR-NGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN--P 250 (945)
Q Consensus 174 i~~~l~~~~w~~v~ii~~d~~~g~-~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~--~ 250 (945)
+.++++ +| +++.+|+++..... +..+.+.+.|+ |+++.......+.++.+.+...++.+++.++|+||-.+. .
T Consensus 43 l~~~l~-~g-~r~liVtd~~~~~~~g~~~~v~~~L~--g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsv 118 (408)
T 1oj7_A 43 LREQIP-HD-ARVLITYGGGSVKKTGVLDQVLDALK--GMDVLEFGGIEPNPAYETLMNAVKLVREQKVTFLLAVGGGSV 118 (408)
T ss_dssp HHHHSC-TT-CEEEEEECSSHHHHHSHHHHHHHHTT--TSEEEEECCCCSSCBHHHHHHHHHHHHHHTCCEEEEEESHHH
T ss_pred HHHHHh-cC-CEEEEEECCchhhhccHHHHHHHHhC--CCEEEEeCCcCCCcCHHHHHHHHHHHHHcCCCEEEEeCCchH
Confidence 445566 67 89988875543333 35777888886 777544334444467788888888888889999997654 4
Q ss_pred hhHHHHHHHH
Q 002267 251 DTGLTIFSVA 260 (945)
Q Consensus 251 ~~~~~~~~~a 260 (945)
-++.+++...
T Consensus 119 iD~AK~iA~~ 128 (408)
T 1oj7_A 119 LDGTKFIAAA 128 (408)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4666666554
No 337
>2qsx_A Putative transcriptional regulator, LYSR family; the putative transcriptional regulator, PSI-2, structure initiative, MCSG; 1.64A {Vibrio parahaemolyticus}
Probab=40.08 E-value=1.7e+02 Score=27.60 Aligned_cols=80 Identities=13% Similarity=0.111 Sum_probs=44.4
Q ss_pred CceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHHHHHHHHHcCcccEEEecE
Q 002267 485 MPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDI 564 (945)
Q Consensus 485 ~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~~ 564 (945)
+.|||+++.. + ...+-..++..+.++.+ .+++++.. ++.. + ++.++++|+++..-
T Consensus 19 G~lrI~~~~~--~------------~~~~L~~~l~~f~~~~P-~i~l~l~~-------~~~~--~-~l~~~~~Dlai~~~ 73 (218)
T 2qsx_A 19 ELLVVDVTPS--F------------ASLWLVPNINDFHQRHP-NIRVKILT-------GDGA--V-KNIHGESDLHVRCL 73 (218)
T ss_dssp CEEEEEECHH--H------------HHHTHHHHHHHHHHHCT-TCEEEEEE-------CCSC--C------CCSEEEEEE
T ss_pred CcEEEecCHH--H------------HHHHHHHHHHHHHHHCC-CeEEEEEe-------cCCc--c-cccCCCCCEEEEcC
Confidence 5799998321 1 12356678888888876 35666654 2112 3 78899999998521
Q ss_pred EEecCcceeEEecccccccceEEEEEccC
Q 002267 565 TIVTNRTKLVDFTQPYMESGLVVVAPVQK 593 (945)
Q Consensus 565 ~~t~~r~~~~dfs~p~~~~~~~~vv~~~~ 593 (945)
..... .. -+.++....++++++...
T Consensus 74 ~~~~~-~~---~~~~l~~~~~~~v~sp~~ 98 (218)
T 2qsx_A 74 PLSTH-YE---YSQLLCEETLLLIGNTNL 98 (218)
T ss_dssp ECCSC-CS---SEEEEEEEEEEEEEETTC
T ss_pred CCCCC-Cc---cceeccCCCEEEEEChhh
Confidence 00111 11 456777888888876544
No 338
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=39.52 E-value=67 Score=31.87 Aligned_cols=94 Identities=11% Similarity=-0.009 Sum_probs=66.0
Q ss_pred HHHHHHHHHHcCCeEEEEEEEe--CCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEc
Q 002267 171 MHAVADLVEYYGWREVIAIFVD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHV 248 (945)
Q Consensus 171 ~~ai~~~l~~~~w~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~ 248 (945)
.....+.++..|.+.|=+.... ........+.+++.+++.|+++........ .....+...++..+..+++.|+++.
T Consensus 32 ~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~-~~~~~~~~~i~~A~~lGa~~v~~~p 110 (257)
T 3lmz_A 32 LDTTLKTLERLDIHYLCIKDFHLPLNSTDEQIRAFHDKCAAHKVTGYAVGPIYM-KSEEEIDRAFDYAKRVGVKLIVGVP 110 (257)
T ss_dssp HHHHHHHHHHTTCCEEEECTTTSCTTCCHHHHHHHHHHHHHTTCEEEEEEEEEE-CSHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEecccCCCCCCHHHHHHHHHHHHHcCCeEEEEecccc-CCHHHHHHHHHHHHHhCCCEEEecC
Confidence 3556677888899888765321 122345578899999999998875443221 3556777888888888888888876
Q ss_pred ChhhHHHHHHHHHhCCC
Q 002267 249 NPDTGLTIFSVAKSLGM 265 (945)
Q Consensus 249 ~~~~~~~~~~~a~~~g~ 265 (945)
..+....+...|++.|+
T Consensus 111 ~~~~l~~l~~~a~~~gv 127 (257)
T 3lmz_A 111 NYELLPYVDKKVKEYDF 127 (257)
T ss_dssp CGGGHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 66667777777777775
No 339
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=39.46 E-value=67 Score=33.65 Aligned_cols=66 Identities=3% Similarity=-0.150 Sum_probs=44.5
Q ss_pred cCCeEEEEEEEe--CCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEc
Q 002267 181 YGWREVIAIFVD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHV 248 (945)
Q Consensus 181 ~~w~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~ 248 (945)
-.-+.|+++..+ ++|.......+.+++++.|..+.....-. .+.......++.+...+.|.||+..
T Consensus 59 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~--~~~~~~~~~l~~l~~~~vdGiIi~~ 126 (349)
T 1jye_A 59 KQSLLIGVATSSLALHAPSQIVAAILSRADQLGASVVVSMVER--SGVEACKTAVHNLLAQRVSGLIINY 126 (349)
T ss_dssp ---CEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECCS--SSHHHHHHHHHHHHTTTCSCEEEES
T ss_pred CCCCEEEEEeCCCCcccHHHHHHHHHHHHHHcCCEEEEEeCCC--CcHHHHHHHHHHHHHCCCCEEEEec
Confidence 344678888864 56667788899999999999876542211 1233445667777778899888864
No 340
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=39.37 E-value=54 Score=32.84 Aligned_cols=115 Identities=16% Similarity=0.056 Sum_probs=68.7
Q ss_pred EEEEEeccCCccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc--CcEEEEccCChhHHH
Q 002267 52 RIGALFTYDSVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMEN--EVVAAIGPQSSGIAH 129 (945)
Q Consensus 52 ~IG~l~~l~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~--~v~aiiGp~~s~~~~ 129 (945)
+|+++...... ...-..|+.-|+++.+ .++...+.....+...+.+.+.+++.+ ++.||+.. +...+.
T Consensus 120 ~i~~i~~~~~~-~~~R~~gf~~~l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-~d~~a~ 189 (280)
T 3gyb_A 120 HIAHLRVGSGA-GLRRFESFEATMRAHG--------LEPLSNDYLGPAVEHAGYTETLALLKEHPEVTAIFSS-NDITAI 189 (280)
T ss_dssp SEEEECCSSHH-HHHHHHHHHHHHHHTT--------CCCEECCCCSCCCHHHHHHHHHHHHHHCTTCCEEEES-SHHHHH
T ss_pred eEEEEeCCCch-HHHHHHHHHHHHHHcC--------cCCCcccccCCCCHHHHHHHHHHHHhCCCCCCEEEEC-ChHHHH
Confidence 57777665543 4556677777777642 122222245556788888888888876 58899984 455566
Q ss_pred HHHHhhcccC------ccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHH
Q 002267 130 VISHVVNELN------VPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLV 178 (945)
Q Consensus 130 ~va~~~~~~~------iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l 178 (945)
.+...+.+.+ +.++++.... +.....|-+-....+...++...++++
T Consensus 190 g~~~al~~~g~~vP~di~vvg~d~~~--~~~~~~p~lttv~~~~~~~g~~av~~l 242 (280)
T 3gyb_A 190 GALGAARELGLRVPEDLSIIGYDNTP--LAQTRLINLTTIDDNSIGVGYNAALLL 242 (280)
T ss_dssp HHHHHHHHHTCCTTTTCEEEEESCCH--HHHSTTTCCCEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCeeEEEEECCch--HhhccCCCceEEecCHHHHHHHHHHHH
Confidence 6666665544 3467664432 222223445555566666777766654
No 341
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=39.20 E-value=82 Score=23.59 Aligned_cols=12 Identities=17% Similarity=0.396 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q 002267 860 GIACFLALIFFF 871 (945)
Q Consensus 860 ~~g~~lal~vf~ 871 (945)
++|-++++++|.
T Consensus 13 vlGg~~~lll~~ 24 (70)
T 2klu_A 13 VLGGVAGLLLFI 24 (70)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHhHHHHHHHHH
Confidence 444444444443
No 342
>2vd3_A ATP phosphoribosyltransferase; metal-binding, glycosyltransferase, HISG, histidine, magnesi transferase; HET: HIS; 2.45A {Methanobacterium thermoautotrophicum}
Probab=39.05 E-value=26 Score=35.64 Aligned_cols=102 Identities=18% Similarity=0.113 Sum_probs=62.2
Q ss_pred CCCChHHhhcCCCCeEEeeCchHHHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceeEEecchhhHHHHhccCCcc
Q 002267 701 QIEGIDSLISSTEPIGVQDGSFAWNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTNCE 780 (945)
Q Consensus 701 ~i~~~~dL~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~~ 780 (945)
.+++++||. .+++|+...-.....||. +.+.+ .+++.....-|..- ..|-.|++++-........++ +
T Consensus 105 ~~~~~~~l~-~~~RIATkyp~l~~~yf~-~~gi~-~~ii~l~GsvE~ap------~~GlADaIvDivsTG~TLraN---g 172 (289)
T 2vd3_A 105 TIRGPEDIP-RGAVIATEFPGITENYLR-EHGID-AEVVELTGSTEIAP------FIGVADLITDLSSTGTTLRMN---H 172 (289)
T ss_dssp SCCSGGGCC-TTCEEEESCHHHHHHHHH-HTTCC-CEEEECSSCGGGTT------TTTSCSEEEEEESSTHHHHHT---T
T ss_pred CCCCHHHhc-CCCEEEeCcHHHHHHHHH-HcCCc-EEEEECCCceeecc------CCCcccEEEEEeCChHHHHHC---C
Confidence 455777772 278898887778888885 45554 45665554444332 227889999887777766555 5
Q ss_pred EEEeCccccccceEEEecCCC-cc-hHHHHHHHHhcc
Q 002267 781 FRTVGQEFTKSGWGFAFQRDS-PL-AIDLSTAILQLS 815 (945)
Q Consensus 781 ~~~~~~~~~~~~~~~~~~k~s-pl-~~~i~~~i~~l~ 815 (945)
|..++.. ....-.+...+.+ +. .+.++..+.+|.
T Consensus 173 L~~ie~I-~~ssA~LI~n~~s~~~k~~~i~~l~~rl~ 208 (289)
T 2vd3_A 173 LRVIDTI-LESSVKLIANRESYATKSGIIEELRTGIR 208 (289)
T ss_dssp EEEEEEE-EEECEEEEECHHHHHHSHHHHHHHHHHHH
T ss_pred CEEeEEE-EeeEEEEEEccchhhhHHHHHHHHHHHHH
Confidence 7777443 4444455555554 22 245555555553
No 343
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=39.01 E-value=34 Score=35.77 Aligned_cols=60 Identities=15% Similarity=0.149 Sum_probs=49.8
Q ss_pred ccchhhHHHHHHHHhhccc--cCccc--ccchhhHHHHHHHHHHhhhhhhhhhhheeeeecccc
Q 002267 640 SQQLVTIFWFSFSTMFFSH--RENTV--SSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLT 699 (945)
Q Consensus 640 ~~~~~~~~~~~~~~l~~~~--~~~p~--s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~ 699 (945)
..++..++||++.++..-| ...|. ...+|++..+-.++++++.+.-++-+.+-++.++.+
T Consensus 89 ~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp~~r 152 (340)
T 3sya_A 89 LNGFVSAFLFSIETETTIGYGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPKKR 152 (340)
T ss_dssp CCSTTHHHHHHHHHHSCCCCSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGG
T ss_pred ccCHHHHHhhhheeeeeecCCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc
Confidence 3568899999999998665 33565 567999999999999999999999999988877644
No 344
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=38.87 E-value=47 Score=30.60 Aligned_cols=62 Identities=13% Similarity=0.079 Sum_probs=44.3
Q ss_pred eEEEEEEEeCCc--c---cchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEc
Q 002267 184 REVIAIFVDDDY--G---RNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHV 248 (945)
Q Consensus 184 ~~v~ii~~d~~~--g---~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~ 248 (945)
-+|++|...|+- | ......+.+.+++.|.++.....++ .+ +.+...+++..+.++|+||..+
T Consensus 8 ~rv~ii~tGdEl~~G~i~Dsn~~~l~~~l~~~G~~v~~~~iv~--Dd-~~i~~al~~a~~~~~DlVittG 74 (164)
T 3pzy_A 8 RSARVIIASTRASSGEYEDRCGPIITEWLAQQGFSSAQPEVVA--DG-SPVGEALRKAIDDDVDVILTSG 74 (164)
T ss_dssp CEEEEEEECHHHHC----CCHHHHHHHHHHHTTCEECCCEEEC--SS-HHHHHHHHHHHHTTCSEEEEES
T ss_pred CEEEEEEECCCCCCCceeeHHHHHHHHHHHHCCCEEEEEEEeC--CH-HHHHHHHHHHHhCCCCEEEECC
Confidence 467777755432 2 3345678889999999988776666 35 7788888876655789999875
No 345
>2nr1_A NR1 M2, M2; receptor, signal, postsynaptic membrane; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=38.39 E-value=8.3 Score=23.05 Aligned_cols=19 Identities=26% Similarity=0.609 Sum_probs=14.7
Q ss_pred ccchhhHHHHHHHHhhccc
Q 002267 640 SQQLVTIFWFSFSTMFFSH 658 (945)
Q Consensus 640 ~~~~~~~~~~~~~~l~~~~ 658 (945)
...+..++||+|++++..+
T Consensus 6 ~~~l~aa~wF~WGvllnsg 24 (27)
T 2nr1_A 6 ALTLSSAMWFSWGVLLNSG 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ceehhhhHHHhhHhheecc
Confidence 3457889999999998553
No 346
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=38.29 E-value=51 Score=33.34 Aligned_cols=81 Identities=9% Similarity=-0.052 Sum_probs=53.1
Q ss_pred eEEEEEEEe--CCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcCh-hhHHHHHHHH
Q 002267 184 REVIAIFVD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNP-DTGLTIFSVA 260 (945)
Q Consensus 184 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~-~~~~~~~~~a 260 (945)
+.|+++..+ ++|.....+.+.+++++.|..+....... ..+...-...++.+...++|.||+.... ......++++
T Consensus 2 ~~Igvi~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~~~~~~~ 80 (288)
T 1gud_A 2 AEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFASPS-EGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARA 80 (288)
T ss_dssp CEEEEEESCSSSHHHHHHHHHHHHHHHHHTCCEEEEECSS-TTCHHHHHHHHHHHHTSSEEEEEECCSSSSTTHHHHHHH
T ss_pred cEEEEEeCCCCchHHHHHHHHHHHHHHHcCCEEEEeCCCC-CCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHH
Confidence 467888754 66777888899999999998876543111 1233444556777777889999886433 2233456777
Q ss_pred HhCCC
Q 002267 261 KSLGM 265 (945)
Q Consensus 261 ~~~g~ 265 (945)
.+.|+
T Consensus 81 ~~~~i 85 (288)
T 1gud_A 81 WKKGI 85 (288)
T ss_dssp HHTTC
T ss_pred HHCCC
Confidence 76664
No 347
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=38.17 E-value=58 Score=30.39 Aligned_cols=62 Identities=15% Similarity=0.125 Sum_probs=43.2
Q ss_pred EEEEEEEeCC-c------c---cchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhc-cCCceEEEEEc
Q 002267 185 EVIAIFVDDD-Y------G---RNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGAN-LMESRVFVVHV 248 (945)
Q Consensus 185 ~v~ii~~d~~-~------g---~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~-~~~~~vivl~~ 248 (945)
+++||...|. + | ...-..+.+.|++.|++|.....++ .+.+.+...+.+.. ..++|+|+..+
T Consensus 17 ~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~G~~v~~~~iV~--Dd~~~i~~al~~~~a~~~~DlVittG 89 (178)
T 3iwt_A 17 NFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVP--DDKIKILKAFTDALSIDEVDVIISTG 89 (178)
T ss_dssp EEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEEC--SCHHHHHHHHHHHHTCTTCCEEEEES
T ss_pred EEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHCCCEEEEEEEeC--CCHHHHHHHHHHHHhcCCCCEEEecC
Confidence 6778775431 1 1 1234678889999999999887777 45667777777654 35689999875
No 348
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=37.81 E-value=49 Score=33.25 Aligned_cols=68 Identities=6% Similarity=0.017 Sum_probs=48.9
Q ss_pred HHHcCCeEEEEEEEe--CCcccchHHHHHHHHhhcCcE-EEEeecCCCCCChHHHHHHHHhhccCCceEEEEEc
Q 002267 178 VEYYGWREVIAIFVD--DDYGRNGISVLGDALSKKRAK-ISYKAPFSPGASRSAINSLLVGANLMESRVFVVHV 248 (945)
Q Consensus 178 l~~~~w~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~-v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~ 248 (945)
++.-.-+.|+++..+ ++|.....+.+.+++++.|.. +..... . .+...-...++.+...++|.||+..
T Consensus 5 L~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~--~~~~~~~~~~~~l~~~~vdgiIi~~ 75 (277)
T 3hs3_A 5 LYQKKSKMIGIIIPDLNNRFYAQIIDGIQEVIQKEGYTALISFST-N--SDVKKYQNAIINFENNNVDGIITSA 75 (277)
T ss_dssp ---CCCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECS-S--CCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred hhcCCCCEEEEEeCCCCChhHHHHHHHHHHHHHHCCCCEEEEEeC-C--CChHHHHHHHHHHHhCCCCEEEEcc
Confidence 444456789999865 667788899999999999998 654321 1 3445556677888888999999876
No 349
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=37.78 E-value=1.1e+02 Score=29.29 Aligned_cols=86 Identities=7% Similarity=0.011 Sum_probs=56.6
Q ss_pred eEEEEEEEeCCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcC----hhhHHHHHHH
Q 002267 184 REVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN----PDTGLTIFSV 259 (945)
Q Consensus 184 ~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~----~~~~~~~~~~ 259 (945)
.+|.+.....+.-.-+...+...++.+|.+|.+-. .....++ ++..++..++|+|.+.+. ......++++
T Consensus 89 ~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG---~~vp~~~---l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~ 162 (210)
T 1y80_A 89 GKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLG---VDIEPGK---FVEAVKKYQPDIVGMSALLTTTMMNMKSTIDA 162 (210)
T ss_dssp CEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECC---SSBCHHH---HHHHHHHHCCSEEEEECCSGGGTHHHHHHHHH
T ss_pred CEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECC---CCCCHHH---HHHHHHHcCCCEEEEeccccccHHHHHHHHHH
Confidence 46666666666666677888889999999987532 1233344 445555568999999864 3456777888
Q ss_pred HHhCCCCCCCeEEEEe
Q 002267 260 AKSLGMTAGSYVWIAT 275 (945)
Q Consensus 260 a~~~g~~~~~~~wi~~ 275 (945)
+++.|....-.++++.
T Consensus 163 l~~~~~~~~~~v~vGG 178 (210)
T 1y80_A 163 LIAAGLRDRVKVIVGG 178 (210)
T ss_dssp HHHTTCGGGCEEEEES
T ss_pred HHhcCCCCCCeEEEEC
Confidence 8887764333455554
No 350
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=37.37 E-value=83 Score=31.66 Aligned_cols=39 Identities=23% Similarity=0.154 Sum_probs=27.4
Q ss_pred HHHHHHHhcCcEEEEccCChhHHHHHHHhhccc-CccEEe
Q 002267 106 MEALQLMENEVVAAIGPQSSGIAHVISHVVNEL-NVPLLS 144 (945)
Q Consensus 106 ~~a~~li~~~v~aiiGp~~s~~~~~va~~~~~~-~iP~Is 144 (945)
+.+..|.+.++.+|+=+-.+..+.++..+-+.. ++|+|.
T Consensus 60 ~~~~~L~~~g~~~iVIACNTa~~~al~~lr~~~~~iPvig 99 (268)
T 3out_A 60 QTAKFLIDQEVKAIIIACNTISAIAKDIVQEIAKAIPVID 99 (268)
T ss_dssp HHHHHHHHTTCSEEEECCHHHHHHHHHHHHHHHTTSCEEE
T ss_pred HHHHHHHHCCCCEEEEeCCChHHHHHHHHHHhcCCCCEEe
Confidence 344455556999988875555555666777777 899997
No 351
>3mz1_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative, MI center for STR uctural genomics, MCSG; 1.88A {Sinorhizobium meliloti}
Probab=37.29 E-value=43 Score=33.74 Aligned_cols=80 Identities=13% Similarity=0.079 Sum_probs=47.5
Q ss_pred CceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHHHHHHHHHcCcccEEEecE
Q 002267 485 MPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDI 564 (945)
Q Consensus 485 ~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~~ 564 (945)
++|+||++.. + ...+...++..+.+..+ .+.+++... .. +.++.+|++|+++...
T Consensus 88 ~~l~I~~~~~--~------------~~~~l~~~l~~f~~~~P-~v~i~~~~~------~~----~~~l~~~~~Dl~i~~~ 142 (300)
T 3mz1_A 88 GRLRVETASA--F------------ANLVIIPALPEFHKKYP-DIQIDLGVS------DR----TIDYLAENVDCAIRAG 142 (300)
T ss_dssp EEEEEEECHH--H------------HHHTHHHHHHHHHHHCT-TEEEEEEEC------CC----C--CCCTTCCEEEEES
T ss_pred ceEEEEecHH--H------------HHHHHHHHHHHHHHHCC-CcEEEEEeC------CC----cccccccCCcEEEEec
Confidence 5699998321 1 12356678888888775 355665431 11 1257889999998643
Q ss_pred EEecCcceeEEecccccccceEEEEEccC
Q 002267 565 TIVTNRTKLVDFTQPYMESGLVVVAPVQK 593 (945)
Q Consensus 565 ~~t~~r~~~~dfs~p~~~~~~~~vv~~~~ 593 (945)
.... ..+. +.++....++++++...
T Consensus 143 ~~~~---~~l~-~~~l~~~~~~~v~~~~~ 167 (300)
T 3mz1_A 143 TLTD---QSLI-ARRITEMKFVACASRDF 167 (300)
T ss_dssp SCSC---TTSE-EEEEEEECEEEEEEHHH
T ss_pred cCCC---CCeE-EEEeecceeEEEECHHH
Confidence 2222 1222 36677788888887653
No 352
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=37.29 E-value=1.6e+02 Score=26.61 Aligned_cols=84 Identities=11% Similarity=0.129 Sum_probs=48.2
Q ss_pred eEEEEEEEeCCccc--chHHHHHHHHhhcCcEEEEeecCCCCCChH-HHHHHHHhhccCCceEEEEEcCh--hhH--HHH
Q 002267 184 REVIAIFVDDDYGR--NGISVLGDALSKKRAKISYKAPFSPGASRS-AINSLLVGANLMESRVFVVHVNP--DTG--LTI 256 (945)
Q Consensus 184 ~~v~ii~~d~~~g~--~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~-d~~~~l~~l~~~~~~vivl~~~~--~~~--~~~ 256 (945)
+++.|+|. +.+|. ..++.+.+.+++.|+++.... +. .. +...++..+. +.|.||+.++. ... ..+
T Consensus 5 ~kv~IvY~-S~~GnT~~iA~~ia~~l~~~g~~v~~~~-~~----~~~~~~~~~~~~~--~~d~ii~Gspty~g~~p~~~~ 76 (159)
T 3fni_A 5 TSIGVFYV-SEYGYSDRLAQAIINGITKTGVGVDVVD-LG----AAVDLQELRELVG--RCTGLVIGMSPAASAASIQGA 76 (159)
T ss_dssp CEEEEEEC-TTSTTHHHHHHHHHHHHHHTTCEEEEEE-SS----SCCCHHHHHHHHH--TEEEEEEECCBTTSHHHHHHH
T ss_pred CEEEEEEE-CCChHHHHHHHHHHHHHHHCCCeEEEEE-Cc----CcCCHHHHHHHHH--hCCEEEEEcCcCCCCccHHHH
Confidence 57889984 44554 567889999999898764332 22 22 3444444443 46888887532 222 356
Q ss_pred HHHHHhCCCCCCCeEEEEe
Q 002267 257 FSVAKSLGMTAGSYVWIAT 275 (945)
Q Consensus 257 ~~~a~~~g~~~~~~~wi~~ 275 (945)
+.........+.....+++
T Consensus 77 l~~l~~~~~~~k~va~fgs 95 (159)
T 3fni_A 77 LSTILGSVNEKQAVGIFET 95 (159)
T ss_dssp HHHHHHHCCTTSEEEEECC
T ss_pred HHHHHhhcccCCEEEEEEc
Confidence 6666555554443334433
No 353
>3cg1_A UPF0100 protein PF0080; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.60A {Pyrococcus furiosus} PDB: 3cg3_A
Probab=37.25 E-value=1.7e+02 Score=29.52 Aligned_cols=70 Identities=14% Similarity=0.012 Sum_probs=42.8
Q ss_pred HHHHHHHH---Hh-CCCCccE--EEEEcCCCCCCCCHHHHHHHHHc-C-cccEEEecEEEecC---cceeEEeccccccc
Q 002267 515 IDVFEAAV---NL-LPYPVPH--NYIMYGNGKRNPIYNDIVQQVAL-N-KFDAAVGDITIVTN---RTKLVDFTQPYMES 583 (945)
Q Consensus 515 ~dll~~l~---~~-l~~~~~~--~~~~~~~~~~~~~~~~~i~~l~~-g-~~D~~~~~~~~t~~---r~~~~dfs~p~~~~ 583 (945)
-++++.+. ++ .|.++++ .+ ++-..++.+|.. | .+|+.+..-....+ .....+...||...
T Consensus 20 ~~~~~~F~~~~~~~~gi~V~~~~~~---------~~s~~l~~~i~~~g~~~Dv~~~~~~~~~~~l~~~g~~~~~~~~~~~ 90 (296)
T 3cg1_A 20 QEVEKEFSEYAERNLGIKVSFQDEA---------SGSVMAVRKVTDLGRKADVIGVADYTLIPQLLIPNYTDFYVLFATN 90 (296)
T ss_dssp HHHHHHHHHHHHHHHSCCEEEEEEE---------ECHHHHHHHHHTSCCCCSEEEESSTTHHHHHTTTTTCSCCEEEEEC
T ss_pred HHHHHHHHHHHHhCCCceEEEEeec---------CCHHHHHHHHHhCCCCCCEEEECChhHHHHHhcCCCCCcceecccc
Confidence 35778887 66 6877655 33 445778888887 5 58998753211111 11112355677777
Q ss_pred ceEEEEEccC
Q 002267 584 GLVVVAPVQK 593 (945)
Q Consensus 584 ~~~~vv~~~~ 593 (945)
.+++++++..
T Consensus 91 ~~vi~~~~~~ 100 (296)
T 3cg1_A 91 EIVIAFTDKS 100 (296)
T ss_dssp CEEEEECTTS
T ss_pred cEEEEEcCCC
Confidence 8888887554
No 354
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=36.59 E-value=78 Score=32.11 Aligned_cols=73 Identities=8% Similarity=-0.191 Sum_probs=49.1
Q ss_pred HHHHHHcCCeEEEEEEEe--CCccc-chHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcCh
Q 002267 175 ADLVEYYGWREVIAIFVD--DDYGR-NGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNP 250 (945)
Q Consensus 175 ~~~l~~~~w~~v~ii~~d--~~~g~-~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~ 250 (945)
|.-++.-.-+.|+++..+ +.|.. .....+.+++++.|..+.....- .+.......++.+...++|.||+....
T Consensus 5 Ar~L~~~~s~~Igvi~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~---~~~~~~~~~~~~l~~~~vdGiIi~~~~ 80 (301)
T 3miz_A 5 ARLIRSSRSNTFGIITDYVSTTPYSVDIVRGIQDWANANGKTILIANTG---GSSEREVEIWKMFQSHRIDGVLYVTMY 80 (301)
T ss_dssp -------CCCEEEEEESSTTTCCSCHHHHHHHHHHHHHTTCEEEEEECT---TCHHHHHHHHHHHHHTTCSEEEEEEEE
T ss_pred HHHHhhCCCCEEEEEeCCCcCcccHHHHHHHHHHHHHHCCCEEEEEeCC---CChHHHHHHHHHHHhCCCCEEEEecCC
Confidence 333444556789999865 45666 88999999999999988754321 244555677888888899998887543
No 355
>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A*
Probab=36.46 E-value=61 Score=32.38 Aligned_cols=38 Identities=11% Similarity=0.109 Sum_probs=25.4
Q ss_pred HHHHHHhcCcEEEEccCChhHHHHHHHhhcccCccEEe
Q 002267 107 EALQLMENEVVAAIGPQSSGIAHVISHVVNELNVPLLS 144 (945)
Q Consensus 107 ~a~~li~~~v~aiiGp~~s~~~~~va~~~~~~~iP~Is 144 (945)
.+..|.+.++.+|+-+-.+..+..+..+-+..++|+|.
T Consensus 54 ~~~~L~~~g~d~iviaCNTa~~~~~~~lr~~~~iPvig 91 (255)
T 2jfz_A 54 ALDFFKPHEIELLIVACNTASALALEEMQKYSKIPIVG 91 (255)
T ss_dssp HHHHHGGGCCSCEEECCHHHHHHTHHHHHHHCSSCEEC
T ss_pred HHHHHHHCCCCEEEEeCchhhHHHHHHHHHhCCCCEEe
Confidence 33344455888888765555544566666778999997
No 356
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=36.17 E-value=34 Score=34.70 Aligned_cols=79 Identities=9% Similarity=-0.009 Sum_probs=47.1
Q ss_pred CeEEEEEEE--eCCcccchHHHHHHHHhhcCcEEEEe-ecCCCCCChHHHHHHHHhhccCCceEEEEEcChhhHHHHHHH
Q 002267 183 WREVIAIFV--DDDYGRNGISVLGDALSKKRAKISYK-APFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSV 259 (945)
Q Consensus 183 w~~v~ii~~--d~~~g~~~~~~l~~~l~~~g~~v~~~-~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~~~~~~~~~~ 259 (945)
-++|+++.. +++|.......+.+++++.|.++... ..- .+.......++.+...++|.||+...... ...++.
T Consensus 8 ~~~Ig~i~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~---~~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~ 83 (290)
T 3clk_A 8 SNVIAAVVSSVRTNFAQQILDGIQEEAHKNGYNLIIVYSGS---ADPEEQKHALLTAIERPVMGILLLSIALT-DDNLQL 83 (290)
T ss_dssp CCEEEEECCCCSSSHHHHHHHHHHHHHHTTTCEEEEEC-------------CHHHHHHSSCCSEEEEESCC-----CHHH
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEEeCCC---CCHHHHHHHHHHHHhcCCCEEEEecccCC-HHHHHH
Confidence 357888875 36777888899999999999987653 211 12222344666777778999988754322 244566
Q ss_pred HHhCCC
Q 002267 260 AKSLGM 265 (945)
Q Consensus 260 a~~~g~ 265 (945)
+.+.|+
T Consensus 84 l~~~~i 89 (290)
T 3clk_A 84 LQSSDV 89 (290)
T ss_dssp HHCC--
T ss_pred HHhCCC
Confidence 665554
No 357
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=35.67 E-value=79 Score=31.73 Aligned_cols=83 Identities=11% Similarity=0.042 Sum_probs=57.5
Q ss_pred CCeEEe--eCchHHHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceeEEecch---------hhHHHHhccCCccE
Q 002267 713 EPIGVQ--DGSFAWNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDEL---------PYIELFMSKTNCEF 781 (945)
Q Consensus 713 ~~v~~~--~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~---------~~~~~~~~~~~~~~ 781 (945)
.+|+++ .|+|.+.-....++-....++++.+.++++++|.+ |++|..+... ..++.+.+. ++
T Consensus 4 ~~iaylGp~Gtfs~~Aa~~~f~~~~~~~~~~~s~~~v~~aV~~----g~~d~gVvPiENS~~G~V~~t~DlL~~~---~l 76 (267)
T 2qmw_A 4 MQLYYLGPKGTFSYLACRQYFSENEATFQPKSNLFEVIKAVAD----DDTSIGVVPIENSIEGTINIVADALAQQ---DV 76 (267)
T ss_dssp CEEEEECSTTSHHHHHHHHHCCTTSSEEEEESSHHHHHHHHHH----CSSEEEEEEEESCSSSCSHHHHHHHHTT---SS
T ss_pred cEEEEECCCCcHHHHHHHHhhccCCceEEEcCCHHHHHHHHHc----CCCCEEEEEehhcCCCChHHHHHHhhcC---Cc
Confidence 457886 68887776654443222347899999999999999 7887665531 233333333 58
Q ss_pred EEeCccccccceEEEecCCCc
Q 002267 782 RTVGQEFTKSGWGFAFQRDSP 802 (945)
Q Consensus 782 ~~~~~~~~~~~~~~~~~k~sp 802 (945)
.++++.+.....++...+|..
T Consensus 77 ~I~gE~~l~I~h~Ll~~~g~~ 97 (267)
T 2qmw_A 77 FAHGEIRLDINFALYGNGTDS 97 (267)
T ss_dssp EEEEEEEEECCEEEECCSSCC
T ss_pred EEEEEEEEEeeeEEEecCCCC
Confidence 999998888888888877643
No 358
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=35.44 E-value=39 Score=34.38 Aligned_cols=79 Identities=5% Similarity=-0.018 Sum_probs=53.5
Q ss_pred CeEEEEEEE-------eCCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcChhhHHH
Q 002267 183 WREVIAIFV-------DDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLT 255 (945)
Q Consensus 183 w~~v~ii~~-------d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~~~~~~ 255 (945)
-+.|++|.. +++|.......+.+++++.|..+... ....+...-...++.+...++|.||+...... ..
T Consensus 7 s~~Igvi~~~~~~~~~~~~f~~~~~~gi~~~a~~~g~~~~~~---~~~~~~~~~~~~~~~l~~~~vdGiI~~~~~~~-~~ 82 (295)
T 3hcw_A 7 TYKIGLVLKGSEEPIRLNPFYINVLLGISETCNQHGYGTQTT---VSNNMNDLMDEVYKMIKQRMVDAFILLYSKEN-DP 82 (295)
T ss_dssp SCEEEEECSCCCHHHHSCHHHHHHHHHHHHHHHTTTCEEEEC---CCCSHHHHHHHHHHHHHTTCCSEEEESCCCTT-CH
T ss_pred CcEEEEEeecCCcccccChHHHHHHHHHHHHHHHCCCEEEEE---cCCCChHHHHHHHHHHHhCCcCEEEEcCcccC-hH
Confidence 357888872 36677888999999999999987643 21122333456777787889999998743322 24
Q ss_pred HHHHHHhCCC
Q 002267 256 IFSVAKSLGM 265 (945)
Q Consensus 256 ~~~~a~~~g~ 265 (945)
.++.+.+.|+
T Consensus 83 ~~~~l~~~~i 92 (295)
T 3hcw_A 83 IKQMLIDESM 92 (295)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHhCCC
Confidence 5666776665
No 359
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*
Probab=35.08 E-value=3.8e+02 Score=27.31 Aligned_cols=145 Identities=6% Similarity=-0.100 Sum_probs=87.2
Q ss_pred CChHHHHHHHHHHHhcCcEE--EEccCCh-hHHHHHHHhhccc-CccEEecccCCCCCCCCCCCceEEecCChhHHHHHH
Q 002267 99 CSGFVGTMEALQLMENEVVA--AIGPQSS-GIAHVISHVVNEL-NVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAV 174 (945)
Q Consensus 99 ~~~~~a~~~a~~li~~~v~a--iiGp~~s-~~~~~va~~~~~~-~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai 174 (945)
-.+..+...+.++++.++.+ ++-+..+ .....+...+++. ++.+|.+.+. .+-+.. ....-..|..
T Consensus 79 vP~~~~~~~~~e~i~~Gi~~iv~~t~G~~~~~~~~l~~~a~~~~gi~liGPnc~--Gii~p~-~~~~~~~~~~------- 148 (305)
T 2fp4_A 79 VPPPFAAAAINEAIDAEVPLVVCITEGIPQQDMVRVKHRLLRQGKTRLIGPNCP--GVINPG-ECKIGIMPGH------- 148 (305)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEECCCCCCHHHHHHHHHHHTTCSSCEEECSSSC--EEEETT-TEEEESSCGG-------
T ss_pred cCHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHhcCCcEEEeCCCC--eEeccc-ccceeecccc-------
Confidence 35667777788888887655 3344332 2344778889998 9999976542 221111 1111112211
Q ss_pred HHHHHHcCCeEEEEEEEeCCcccchHHHHHHHHhhcCcEEEEeecCCCCC-ChHHHHHHHHhhc-cCCceEEEEEcCh--
Q 002267 175 ADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGA-SRSAINSLLVGAN-LMESRVFVVHVNP-- 250 (945)
Q Consensus 175 ~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~-~~~d~~~~l~~l~-~~~~~vivl~~~~-- 250 (945)
.+.--+|++|..... ....+.+.+.+.|+-+.....+--+. ...++.+.|+.+. +.++++|+++...
T Consensus 149 -----~~~~G~va~vSqSG~----l~~~~~~~~~~~g~G~S~~vs~G~~~~~~~~~~d~l~~~~~Dp~T~~I~l~~E~~g 219 (305)
T 2fp4_A 149 -----IHKKGRIGIVSRSGT----LTYEAVHQTTQVGLGQSLCVGIGGDPFNGTDFTDCLEIFLNDPATEGIILIGEIGG 219 (305)
T ss_dssp -----GCCEEEEEEEESCSH----HHHHHHHHHHHTTCCEEEEEECCSSSSCSCCHHHHHHHHHHCTTCCEEEEEEESSS
T ss_pred -----CCCCCCEEEEecchH----HHHHHHHHHHhcCCCeeEEeccCCCcCCCCCHHHHHHHHhcCCCCcEEEEEEecCC
Confidence 234467999875443 44556667778887776655554221 1355666777665 4679999999764
Q ss_pred ---hhHHHHHHHHHh
Q 002267 251 ---DTGLTIFSVAKS 262 (945)
Q Consensus 251 ---~~~~~~~~~a~~ 262 (945)
.++.+|++++++
T Consensus 220 ~~e~~~~~f~~~~~~ 234 (305)
T 2fp4_A 220 NAEENAAEFLKQHNS 234 (305)
T ss_dssp SHHHHHHHHHHHHSC
T ss_pred chhhHHHHHHHHHHH
Confidence 468899987754
No 360
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=34.87 E-value=82 Score=31.60 Aligned_cols=64 Identities=8% Similarity=-0.049 Sum_probs=46.2
Q ss_pred CeEEEEEEEe--CCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcC
Q 002267 183 WREVIAIFVD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN 249 (945)
Q Consensus 183 w~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~ 249 (945)
-++|+++..+ ++|.......+.+++++.|..+..... ..+.......++.+...++|.||+...
T Consensus 7 ~~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgii~~~~ 72 (289)
T 1dbq_A 7 TKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNA---WNNLEKQRAYLSMMAQKRVDGLLVMCS 72 (289)
T ss_dssp -CEEEEEESCTTSHHHHHHHHHHHHHHHHHTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEEECS
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEEcC---CCChHHHHHHHHHHHhCCCCEEEEEec
Confidence 3578888754 667777889999999999998765322 134455566777777788999988754
No 361
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=34.66 E-value=50 Score=30.54 Aligned_cols=62 Identities=13% Similarity=0.154 Sum_probs=41.2
Q ss_pred EEEEEEEeCCc--c---cchHHHHHHH----HhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEc
Q 002267 185 EVIAIFVDDDY--G---RNGISVLGDA----LSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHV 248 (945)
Q Consensus 185 ~v~ii~~d~~~--g---~~~~~~l~~~----l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~ 248 (945)
++++|...|+- | ......+.+. +++.|+++.....++ .+.+.+...+++..+.++|+||..+
T Consensus 7 ~v~Ii~~GdEl~~G~i~D~n~~~l~~~~~~~l~~~G~~v~~~~iv~--Dd~~~I~~~l~~a~~~~~DlVittG 77 (167)
T 2g2c_A 7 KSAIIVVSDRISTGTRENKALPLLQRLMSDELQDYSYELISEVVVP--EGYDTVVEAIATALKQGARFIITAG 77 (167)
T ss_dssp EEEEEEECHHHHHTSSCCCHHHHHHHHHCC----CEEEEEEEEEEC--SSHHHHHHHHHHHHHTTCSEEEEES
T ss_pred EEEEEEECCcccCCceeccHHHHHHHhHHhHHHHCCCEEeEEEEeC--CCHHHHHHHHHHHHhCCCCEEEECC
Confidence 57777654332 1 2345667788 899999988777776 4667888888887655689999875
No 362
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=34.27 E-value=79 Score=30.34 Aligned_cols=96 Identities=11% Similarity=0.011 Sum_probs=53.6
Q ss_pred HHHHHHHHHcCCeEEEEEEEeCC--cccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcC
Q 002267 172 HAVADLVEYYGWREVIAIFVDDD--YGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN 249 (945)
Q Consensus 172 ~ai~~~l~~~~w~~v~ii~~d~~--~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~ 249 (945)
..+.++++...-++|++|-.... -.....+.+.+++++.|.++....... .+.+++...+.+ +|+|++.+
T Consensus 16 ~~~~~f~~~~~~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~--~~~~~~~~~l~~-----ad~I~l~G- 87 (206)
T 3l4e_A 16 PLFTEFESNLQGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIAT--ESLGEITTKLRK-----NDFIYVTG- 87 (206)
T ss_dssp HHHHHHSCCCTTCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTT--SCHHHHHHHHHH-----SSEEEECC-
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecC--CChHHHHHHHHh-----CCEEEECC-
Confidence 33444555555689988842211 113467888999999999866432222 244455444443 67888865
Q ss_pred hhhHHHHHHHHHhCCCCC-------CCeEEEEeC
Q 002267 250 PDTGLTIFSVAKSLGMTA-------GSYVWIATD 276 (945)
Q Consensus 250 ~~~~~~~~~~a~~~g~~~-------~~~~wi~~~ 276 (945)
.+...+++.+++.|+.. .|.+++++.
T Consensus 88 -G~~~~l~~~L~~~gl~~~l~~~~~~G~p~~G~s 120 (206)
T 3l4e_A 88 -GNTFFLLQELKRTGADKLILEEIAAGKLYIGES 120 (206)
T ss_dssp -SCHHHHHHHHHHHTHHHHHHHHHHTTCEEEEET
T ss_pred -CCHHHHHHHHHHCChHHHHHHHHHcCCeEEEEC
Confidence 22335555555555321 245666665
No 363
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=34.11 E-value=54 Score=22.59 Aligned_cols=8 Identities=13% Similarity=0.061 Sum_probs=3.1
Q ss_pred HHHhhhcc
Q 002267 874 VCGQFRRF 881 (945)
Q Consensus 874 ~~~~~~~~ 881 (945)
++++++++
T Consensus 32 ~~~RRRr~ 39 (44)
T 2l2t_A 32 VYVRRKSI 39 (44)
T ss_dssp HHHHTTCS
T ss_pred HHhhhhhh
Confidence 33344333
No 364
>2vpn_A Periplasmic substrate binding protein; ectoine, hydroxyectoine, trap-transporter, periplasmic binding protein, transport; HET: 4CS; 1.55A {Halomonas elongata} PDB: 2vpo_A* 3gyy_A
Probab=33.31 E-value=69 Score=33.12 Aligned_cols=102 Identities=11% Similarity=-0.061 Sum_probs=59.1
Q ss_pred CCCCChHHhhcCCCCeEEeeCchHHHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceeEEecchhhHHHHhccCCc
Q 002267 700 SQIEGIDSLISSTEPIGVQDGSFAWNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYIELFMSKTNC 779 (945)
Q Consensus 700 ~~i~~~~dL~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~~~~~~~~~~ 779 (945)
.+|++++||. |++|.+..+......++ .++.. .++. ...|...+|++ |.+|+.....+.+.-.--.+-.
T Consensus 130 ~pI~s~~Dlk--G~KiR~~~~~~~~~~~~-~lGa~---pv~m-~~~Evy~ALq~----G~VDg~~~~~~~~~~~~~~ev~ 198 (316)
T 2vpn_A 130 EPITSPEDFD--NKKIRTMTNPLLAETYK-AFGAT---PTPL-PWGEVYGGLQT----GIIDGQENPIFWIESGGLYEVS 198 (316)
T ss_dssp SCCCSGGGGT--TCEEEECSCHHHHHHHH-HHTCE---EEEC-CGGGHHHHHHH----TSCSEEEEEHHHHHHTTGGGTC
T ss_pred CCCCChHHhC--CCEEEeCCCHHHHHHHH-HcCCe---eeec-CHHHHHHHHHc----CCcceeeCCHHHHHhcCHHHhh
Confidence 5899999997 99998876655555554 45533 2333 56789999999 8999988765544221111123
Q ss_pred cEEEeCccccccceEEEecCCCc--chHHHHHHHHh
Q 002267 780 EFRTVGQEFTKSGWGFAFQRDSP--LAIDLSTAILQ 813 (945)
Q Consensus 780 ~~~~~~~~~~~~~~~~~~~k~sp--l~~~i~~~i~~ 813 (945)
++....... .....+++.+..- |-+.....|..
T Consensus 199 ~y~~~~~~~-~~~~~~~~n~~~~~~L~~~~q~~l~~ 233 (316)
T 2vpn_A 199 PNLTFTSHG-WFTTAMMANQDFYEGLSEEDQQLVQD 233 (316)
T ss_dssp CEEEECCCC-EEEEEEEEEHHHHHHSCHHHHHHHHH
T ss_pred hhheecccc-ccceEEEEcHHHHhcCCHHHHHHHHH
Confidence 433332221 2344566665421 33444444433
No 365
>4exl_A PBP 1, phosphate-binding protein PSTS 1; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; 1.70A {Streptococcus pneumoniae}
Probab=33.19 E-value=49 Score=33.26 Aligned_cols=71 Identities=10% Similarity=-0.016 Sum_probs=46.6
Q ss_pred eeHHHHHHHHHhC-CCCccEEEEEcCCCCCCCCHHHHHHHHHcCcccEEEecEEEec-C--cceeEEecccccccceEEE
Q 002267 513 YCIDVFEAAVNLL-PYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDITIVT-N--RTKLVDFTQPYMESGLVVV 588 (945)
Q Consensus 513 ~~~dll~~l~~~l-~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~~~~t~-~--r~~~~dfs~p~~~~~~~~v 588 (945)
+...+++.+.++. +.+ +.+.. +.-...+.++.+|++|+++.+..... + ....+ ...|+..++++++
T Consensus 17 ~~~~~~~~F~~~~P~v~--i~v~~-------~gS~~gi~~l~~g~~Dig~~~~~~~~~~~~~~~~l-~~~~ia~d~lvvv 86 (265)
T 4exl_A 17 LVEVAADEFGTIHVGKT--VNVQG-------GGSGTGLSQVQSGAVDIGNSDVFAEEKDGIDASAL-VDHKVAVAGLALI 86 (265)
T ss_dssp HHHHHHHHHHHHSTTCE--EEEEE-------ECHHHHHHHHHTTSSSEEEESSCGGGSTTCCGGGE-ECCEEEEEEEEEE
T ss_pred HHHHHHHHHHHHCCCce--EEEee-------CCcHHHHHHHHcCCCccccccCCcchhhcccccCc-eEeeEEEEEEEEE
Confidence 3445777777776 444 44433 44678899999999999886432221 0 11112 2578999999999
Q ss_pred EEccC
Q 002267 589 APVQK 593 (945)
Q Consensus 589 v~~~~ 593 (945)
++...
T Consensus 87 v~~~~ 91 (265)
T 4exl_A 87 VNKEV 91 (265)
T ss_dssp ECTTC
T ss_pred ECCCC
Confidence 98765
No 366
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}
Probab=32.95 E-value=5.2e+02 Score=28.27 Aligned_cols=78 Identities=15% Similarity=0.080 Sum_probs=52.0
Q ss_pred CeEEEEEEEeCCcccchHHHHHHHHhhcCcEEEEeecCCCCC-----ChHHHHHHHHhhcc-CCceEEEEEcC---hhhH
Q 002267 183 WREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGA-----SRSAINSLLVGANL-MESRVFVVHVN---PDTG 253 (945)
Q Consensus 183 w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~-----~~~d~~~~l~~l~~-~~~~vivl~~~---~~~~ 253 (945)
--+|++|..... ....+.+.+.++|+-+.....+--.. .+.++...|+.+.+ .++++|+++.. ...+
T Consensus 112 ~G~vaivSqSGa----l~~~i~~~~~~~g~G~S~~Vs~Gn~~l~~~i~dv~~~D~l~~l~~Dp~T~~I~ly~E~~~e~~~ 187 (480)
T 3dmy_A 112 EGNIGVIGASGT----GIQELCSQIALAGEGITHAIGLGGRDLSREVGGISALTALEMLSADEKSEVLAFVSKPPAEAVR 187 (480)
T ss_dssp EEEEEEEESCSH----HHHHHHHHHHHTTCCEEEEEECCTTTTSTTTTTHHHHHHHHHHHTCTTCCEEEEEESCCCHHHH
T ss_pred CCCEEEEeccHH----HHHHHHHHHHHcCCCceEEEEcCCCccccccCCCCHHHHHHHHhcCCCCCEEEEEEecCCcHHH
Confidence 357888875443 44556677788888777665554221 44567788888764 57899999874 2334
Q ss_pred HHHHHHHHhCC
Q 002267 254 LTIFSVAKSLG 264 (945)
Q Consensus 254 ~~~~~~a~~~g 264 (945)
.+|++++++.+
T Consensus 188 ~~f~~~ar~~~ 198 (480)
T 3dmy_A 188 LKIVNAMKATG 198 (480)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhCC
Confidence 78888887543
No 367
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=32.86 E-value=52 Score=33.39 Aligned_cols=79 Identities=10% Similarity=0.026 Sum_probs=53.2
Q ss_pred CCeEEEEEEE------eCCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcChhhHHH
Q 002267 182 GWREVIAIFV------DDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLT 255 (945)
Q Consensus 182 ~w~~v~ii~~------d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~~~~~~ 255 (945)
.-+.|+++.. +++|.......+.+++++.|..+.....-. .......++.+...+.|.||+....... .
T Consensus 5 ~s~~Igvi~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~----~~~~~~~~~~l~~~~vdGiIi~~~~~~~-~ 79 (294)
T 3qk7_A 5 RTDAIALAYPSRPRVLNNSTFLEMISWIGIELGKRGLDLLLIPDEP----GEKYQSLIHLVETRRVDALIVAHTQPED-F 79 (294)
T ss_dssp CCCEEEEEEESCSGGGSCHHHHHHHHHHHHHHHHTTCEEEEEEECT----TCCCHHHHHHHHHTCCSEEEECSCCSSC-H
T ss_pred ccceEEEEecCCCccccChhHHHHHHHHHHHHHHCCCEEEEEeCCC----hhhHHHHHHHHHcCCCCEEEEeCCCCCh-H
Confidence 3467888887 356777788999999999999877654322 2223445666666789999987543322 5
Q ss_pred HHHHHHhCCC
Q 002267 256 IFSVAKSLGM 265 (945)
Q Consensus 256 ~~~~a~~~g~ 265 (945)
.++.+.+.|+
T Consensus 80 ~~~~l~~~~i 89 (294)
T 3qk7_A 80 RLQYLQKQNF 89 (294)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHhCCC
Confidence 5667777665
No 368
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=32.79 E-value=68 Score=33.56 Aligned_cols=60 Identities=18% Similarity=0.157 Sum_probs=49.8
Q ss_pred ccchhhHHHHHHHHhhccccC--c--ccccchhhHHHHHHHHHHhhhhhhhhhhheeeeecccc
Q 002267 640 SQQLVTIFWFSFSTMFFSHRE--N--TVSSLGRVVLIVWLFVVLIINSSYTASLTSILTVQQLT 699 (945)
Q Consensus 640 ~~~~~~~~~~~~~~l~~~~~~--~--p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~~~~~ 699 (945)
..++..++||++.++..-|-. . |.+..++++..+-.+.++++.+.-++-+.+-++.++.+
T Consensus 92 ~~sf~~af~fSv~T~TTvGYGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~srp~~r 155 (343)
T 3spc_A 92 VNGFVAAFLFSIETQTTIGYGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPKKR 155 (343)
T ss_dssp CCSHHHHHHHHHHHHSCCCCSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCC
T ss_pred cCCHHHHhheeeeeeEeecCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 456899999999999876633 3 45788999999999999999999999999888877644
No 369
>1nrz_A PTS system, sorbose-specific IIB component; beta sheet core, flanking helices, right handed beta-alpha-B crossover, transferase; 1.75A {Klebsiella pneumoniae} SCOP: c.38.1.1
Probab=32.68 E-value=1.3e+02 Score=27.65 Aligned_cols=80 Identities=15% Similarity=0.132 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHcCCeEEEEEEEeCCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcC
Q 002267 170 QMHAVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN 249 (945)
Q Consensus 170 ~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~ 249 (945)
+++.+..+.++++.+++.++ +|..........+.+...-.|+++... +.++....+.+-+..+-++++++-+
T Consensus 14 HGQV~t~W~k~~~~~~IiVv-nD~vA~D~~~k~~lk~a~P~gvk~~i~-------sve~ai~~~~~~~~~~~~v~ll~k~ 85 (164)
T 1nrz_A 14 HGQVTTVWSKVANAQRIIIC-NDDVFNDEVRRTLLRQAAPPGMKVNVV-------SLEKAVAVYHNPQYQDETVFYLFTN 85 (164)
T ss_dssp CHHHHHHHHHHHTCSEEEEE-CHHHHTCHHHHHHHHHTCCTTCEEEEE-------CHHHHHHHHTCGGGTTCEEEEEESS
T ss_pred chhheeeeccccCCCEEEEe-CccccCCHHHHHHHHhcCCCCCeEEEE-------EHHHHHHHHhcccCCCceEEEEECC
Confidence 46778889999999999665 454444556666666666668776532 3455556666655567889999999
Q ss_pred hhhHHHHH
Q 002267 250 PDTGLTIF 257 (945)
Q Consensus 250 ~~~~~~~~ 257 (945)
+.++.+++
T Consensus 86 p~d~~~lv 93 (164)
T 1nrz_A 86 PHDVLTMV 93 (164)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998775
No 370
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=32.48 E-value=32 Score=34.83 Aligned_cols=55 Identities=11% Similarity=0.232 Sum_probs=46.9
Q ss_pred cchhhHHHHHHHHhhccc--cCcccccchhhHHHHHHHHHHhhhhhhhhhhheeeee
Q 002267 641 QQLVTIFWFSFSTMFFSH--RENTVSSLGRVVLIVWLFVVLIINSSYTASLTSILTV 695 (945)
Q Consensus 641 ~~~~~~~~~~~~~l~~~~--~~~p~s~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~ 695 (945)
-++.+++|+++.++..-+ .-.|.+..+|++.+++.++++.+...+.+.+...+..
T Consensus 92 w~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~~ 148 (280)
T 3ukm_A 92 WDFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRITV 148 (280)
T ss_dssp SSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468899999999998665 5589999999999999999999999998888765544
No 371
>2b4l_A Glycine betaine-binding protein; substrate-binding protein, closed liganded, ABC-transporter, compatible solutes, transport protein; 2.00A {Bacillus subtilis} PDB: 2b4m_A* 3chg_D
Probab=32.46 E-value=63 Score=32.58 Aligned_cols=58 Identities=16% Similarity=0.171 Sum_probs=36.8
Q ss_pred CCCceEEEecCccccccceeccCCCCceeeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHHHHHHHHHcCcccEEEe
Q 002267 483 NGMPLRIAVPNRVSYNEFVAKDKSPPGVKGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVG 562 (945)
Q Consensus 483 ~g~~l~v~~~~~~~~~~~~~~~~~~~~~~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~ 562 (945)
++++++||.. +|..- -+...++..+.+.+|+++++.. . ++ .-+...|.+|++|+.+.
T Consensus 163 ~~~~I~ig~~---~w~e~-----------~~~~~v~~~~Le~~Gy~Ve~~~--~------~~-~~~~~al~~G~iD~~~e 219 (268)
T 2b4l_A 163 KGDKINLAYV---AWDSE-----------IASTNVIGKVLEDLGYEVTLTQ--V------EA-GPMWTAIATGSADASLS 219 (268)
T ss_dssp SSCEEEEEEC---CCHHH-----------HHHHHHHHHHHHHHTCEEEEEE--C------CT-THHHHHHHHTSSSEEEE
T ss_pred cCcceEEEcc---CccHH-----------HHHHHHHHHHHHHcCCceEEEE--C------Ch-HHHHHHHHCCCCeEEeh
Confidence 4567898872 23210 1233456666677898866554 2 33 55678899999999865
Q ss_pred c
Q 002267 563 D 563 (945)
Q Consensus 563 ~ 563 (945)
.
T Consensus 220 ~ 220 (268)
T 2b4l_A 220 A 220 (268)
T ss_dssp E
T ss_pred h
Confidence 4
No 372
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=32.17 E-value=3.5e+02 Score=26.70 Aligned_cols=119 Identities=12% Similarity=0.119 Sum_probs=65.8
Q ss_pred eEEEEEEecc-CCccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc--CcEEEEccCChh
Q 002267 50 SVRIGALFTY-DSVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMEN--EVVAAIGPQSSG 126 (945)
Q Consensus 50 ~i~IG~l~~l-~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~--~v~aiiGp~~s~ 126 (945)
.=+||++... +......-..|++-|+++.+ .. +.- ......+...+.+.+.++++. .+.||+.. +..
T Consensus 131 ~~~i~~i~~~~~~~~~~~R~~gf~~~l~~~g-------~~-~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ai~~~-~d~ 200 (289)
T 3brs_A 131 SGKIGVISFVKNSKTAMDREEGLKIGLSDDS-------NK-IEA-IYYCDSNYDKAYDGTVELLTKYPDISVMVGL-NQY 200 (289)
T ss_dssp SCEEEEEESCTTSHHHHHHHHHHHHHHGGGG-------GG-EEE-EEECTTCHHHHHHHHHHHHHHCTTEEEEEES-SHH
T ss_pred CceEEEEECCCCCccHHHHHHHHHHHHHhCC-------Cc-EEe-eecCCCCHHHHHHHHHHHHHhCCCceEEEEC-CCc
Confidence 3467777654 23333455677777776631 11 211 223345677777788888765 58999984 445
Q ss_pred HHHHHHHhhcccC----ccEEecccCCCCCCCCCCCce-EEecCChhHHHHHHHHHH
Q 002267 127 IAHVISHVVNELN----VPLLSFGATDPTLTSLQYPYF-LRTTQSDYYQMHAVADLV 178 (945)
Q Consensus 127 ~~~~va~~~~~~~----iP~Is~~a~~~~ls~~~~p~~-~r~~p~d~~~~~ai~~~l 178 (945)
.+..+...+.+.+ +.++++........-...|.+ -....+...++...++++
T Consensus 201 ~a~g~~~al~~~G~~~di~vvg~d~~~~~~~~~~~~~l~ttv~~~~~~~g~~a~~~l 257 (289)
T 3brs_A 201 SATGAARAIKDMSLEAKVKLVCIDSSMEQIQYLEEGIFEAMVVQKPFNIGYLGVEKA 257 (289)
T ss_dssp HHHHHHHHHHHTTCTTTSEEEEEESCSCC-----CCSCCEEEECCHHHHHHHHHHHH
T ss_pred chHHHHHHHHhcCCCCCEEEEEECCCHHHHHHHHCCceEEEEecChHHHHHHHHHHH
Confidence 5555666665544 678877554421111111344 445556666777666654
No 373
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=31.49 E-value=1.4e+02 Score=24.97 Aligned_cols=70 Identities=13% Similarity=0.133 Sum_probs=44.6
Q ss_pred chHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEc--ChhhHHHHHHHHHhCCCCCCCeEEEEe
Q 002267 198 NGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHV--NPDTGLTIFSVAKSLGMTAGSYVWIAT 275 (945)
Q Consensus 198 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~--~~~~~~~~~~~a~~~g~~~~~~~wi~~ 275 (945)
...+.+...+++.|..|... . +. ...+..+....+|+|++.. ...++..++++.++..-...-.+.+.+
T Consensus 14 ~~~~~l~~~L~~~g~~v~~~---~---~~---~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~ii~~s 84 (127)
T 3i42_A 14 AAAETFKELLEMLGFQADYV---M---SG---TDALHAMSTRGYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKFVAVS 84 (127)
T ss_dssp HHHHHHHHHHHHTTEEEEEE---S---SH---HHHHHHHHHSCCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEE---C---CH---HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCEEEEE
Confidence 35677788888888866432 1 22 3455556667799999974 456788899999886322222344444
Q ss_pred C
Q 002267 276 D 276 (945)
Q Consensus 276 ~ 276 (945)
+
T Consensus 85 ~ 85 (127)
T 3i42_A 85 G 85 (127)
T ss_dssp C
T ss_pred C
Confidence 3
No 374
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=31.49 E-value=47 Score=33.56 Aligned_cols=78 Identities=9% Similarity=-0.141 Sum_probs=50.2
Q ss_pred eEEEEEEEe------CCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcChhhHHHHH
Q 002267 184 REVIAIFVD------DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIF 257 (945)
Q Consensus 184 ~~v~ii~~d------~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~~~~~~~~ 257 (945)
+.|+++..+ ++|.......+.+++++.|.++..... . .+...-...++.+...++|.||+....... ..+
T Consensus 5 ~~Ig~i~~~~~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~-~--~~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-~~~ 80 (287)
T 3bbl_A 5 FMIGYSWTQTEPGQVNHILDQFLSSMVREAGAVNYFVLPFPF-S--EDRSQIDIYRDLIRSGNVDGFVLSSINYND-PRV 80 (287)
T ss_dssp CEEEECCCCCCTTCSCCTHHHHHHHHHHHHHHTTCEEEECCC-C--SSTTCCHHHHHHHHTTCCSEEEECSCCTTC-HHH
T ss_pred eEEEEEecccccccCChhHHHHHHHHHHHHHHcCCEEEEEeC-C--CchHHHHHHHHHHHcCCCCEEEEeecCCCc-HHH
Confidence 467777643 467778889999999999998765321 1 122223456677777889999887533221 455
Q ss_pred HHHHhCCC
Q 002267 258 SVAKSLGM 265 (945)
Q Consensus 258 ~~a~~~g~ 265 (945)
+.+.+.|.
T Consensus 81 ~~l~~~~i 88 (287)
T 3bbl_A 81 QFLLKQKF 88 (287)
T ss_dssp HHHHHTTC
T ss_pred HHHHhcCC
Confidence 66666664
No 375
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=31.45 E-value=81 Score=29.26 Aligned_cols=61 Identities=15% Similarity=0.080 Sum_probs=40.8
Q ss_pred EEEEEEEeCC--cc---cchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEc
Q 002267 185 EVIAIFVDDD--YG---RNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHV 248 (945)
Q Consensus 185 ~v~ii~~d~~--~g---~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~ 248 (945)
++++|...|+ .| ......+.+.+++.|+++.....++ .+.+.+...++++.+ ++|+||..+
T Consensus 5 ~v~IistGdEll~G~i~DtN~~~l~~~L~~~G~~v~~~~iv~--Dd~~~I~~~l~~a~~-~~DlVittG 70 (172)
T 3kbq_A 5 NASVITVGNEILKGRTVNTNAAFIGNFLTYHGYQVRRGFVVM--DDLDEIGWAFRVALE-VSDLVVSSG 70 (172)
T ss_dssp EEEEEEECHHHHTTSSCCHHHHHHHHHHHHTTCEEEEEEEEC--SCHHHHHHHHHHHHH-HCSEEEEES
T ss_pred EEEEEEEcccccCCcEEeHHHHHHHHHHHHCCCEEEEEEEeC--CCHHHHHHHHHHHHh-cCCEEEEcC
Confidence 5677765432 12 2345677888888999888777776 456677777776543 378888764
No 376
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=31.08 E-value=2.5e+02 Score=28.15 Aligned_cols=88 Identities=15% Similarity=-0.006 Sum_probs=61.8
Q ss_pred HHHHHHHHHHcCCeEEEEEEEeCCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEc--
Q 002267 171 MHAVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHV-- 248 (945)
Q Consensus 171 ~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~-- 248 (945)
...+|......|-..+.++.++ .|..+..+.+...-+..++.|..+..+- +.- ++.+.+..++|.|++..
T Consensus 81 p~~~A~~y~~~GA~~IsVltd~-~~f~Gs~~~L~~ir~~v~lPVl~Kdfi~---d~~----qi~ea~~~GAD~VlLi~a~ 152 (272)
T 3tsm_A 81 PPALAKAYEEGGAACLSVLTDT-PSFQGAPEFLTAARQACSLPALRKDFLF---DPY----QVYEARSWGADCILIIMAS 152 (272)
T ss_dssp HHHHHHHHHHTTCSEEEEECCS-TTTCCCHHHHHHHHHTSSSCEEEESCCC---STH----HHHHHHHTTCSEEEEETTT
T ss_pred HHHHHHHHHHCCCCEEEEeccc-cccCCCHHHHHHHHHhcCCCEEECCccC---CHH----HHHHHHHcCCCEEEEcccc
Confidence 3556777788899999888744 4444566777666566677776554332 222 46667789999999875
Q ss_pred -ChhhHHHHHHHHHhCCCC
Q 002267 249 -NPDTGLTIFSVAKSLGMT 266 (945)
Q Consensus 249 -~~~~~~~~~~~a~~~g~~ 266 (945)
.......++..++++||.
T Consensus 153 L~~~~l~~l~~~a~~lGl~ 171 (272)
T 3tsm_A 153 VDDDLAKELEDTAFALGMD 171 (272)
T ss_dssp SCHHHHHHHHHHHHHTTCE
T ss_pred cCHHHHHHHHHHHHHcCCe
Confidence 456788899999999974
No 377
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=31.03 E-value=1.5e+02 Score=28.51 Aligned_cols=87 Identities=7% Similarity=-0.006 Sum_probs=57.0
Q ss_pred eEEEEEEEeCCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEE--EcCh----hhHHHHH
Q 002267 184 REVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVV--HVNP----DTGLTIF 257 (945)
Q Consensus 184 ~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl--~~~~----~~~~~~~ 257 (945)
.+|.+.....+.-.-+..-+...++.+|.+|.+- ..+.+. ..+++.+++.++|+|.+ .+.. .....++
T Consensus 93 ~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~L---G~~vp~---e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i 166 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDL---GVDVLN---ENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLM 166 (215)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEEC---CSSCCH---HHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHH
T ss_pred CeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEc---CCCCCH---HHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHH
Confidence 4555555556666667788888999999998753 222233 44556666778999999 6432 3467778
Q ss_pred HHHHhCCCCCCCeEEEEeC
Q 002267 258 SVAKSLGMTAGSYVWIATD 276 (945)
Q Consensus 258 ~~a~~~g~~~~~~~wi~~~ 276 (945)
+++++.|....-.+|++..
T Consensus 167 ~~l~~~~~~~~v~v~vGG~ 185 (215)
T 3ezx_A 167 DRLNEEKLRDSVKCMFGGA 185 (215)
T ss_dssp HHHHHTTCGGGSEEEEESS
T ss_pred HHHHHcCCCCCCEEEEECC
Confidence 8888888643334666643
No 378
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=30.65 E-value=31 Score=35.10 Aligned_cols=67 Identities=10% Similarity=0.055 Sum_probs=42.0
Q ss_pred eeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHHHHHHHHHcCcccEEEecEEEecCcceeEEecccccccceEEEEEc
Q 002267 512 GYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDITIVTNRTKLVDFTQPYMESGLVVVAPV 591 (945)
Q Consensus 512 G~~~dll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~~~~t~~r~~~~dfs~p~~~~~~~~vv~~ 591 (945)
.+...++..+.+..+ .+.+.+.. .+.+.++.+|++|+++........ .+. ..|+....+++++++
T Consensus 106 ~~l~~~l~~f~~~~P-~v~i~l~~----------~~~~~~l~~~~~Dl~i~~~~~~~~---~l~-~~~L~~~~~~~v~~~ 170 (306)
T 3hhg_A 106 HLLAPLAAKFNERYP-HIRLSLVS----------SEGYINLIERKVDIALRAGELDDS---GLR-ARHLFDSRFRVIASP 170 (306)
T ss_dssp HTHHHHHHHHHHHCT-TEEEEEEC----------CSSSHHHHTTSSSCEEESCCCCCS---SCE-EEEEEEEEEEEEECH
T ss_pred HHHHHHHHHHHHHCC-CeEEEEEe----------ccchhhHhhcCccEEEEeCCCCCC---CeE-EEEeeeeEEEEEECH
Confidence 456778888888876 35555542 122456789999999864322221 222 466777788888865
Q ss_pred cC
Q 002267 592 QK 593 (945)
Q Consensus 592 ~~ 593 (945)
..
T Consensus 171 ~~ 172 (306)
T 3hhg_A 171 EY 172 (306)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 379
>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A
Probab=30.53 E-value=1.6e+02 Score=29.13 Aligned_cols=87 Identities=11% Similarity=0.143 Sum_probs=59.3
Q ss_pred HHHHHHHHHHcCCeEEEEEEEeCCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcC-
Q 002267 171 MHAVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN- 249 (945)
Q Consensus 171 ~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~- 249 (945)
...++...+.. -.-+.+++ |..|..+..+.+...-+.-++.|..+..+. +.+ ++.+.+..++|+|.+.+.
T Consensus 63 ~~~iA~~y~~~-A~~IsVlT-d~~~F~gs~~dL~~ir~~v~lPvLrKDfi~-----~~~--qi~ea~~~GAD~ilLi~a~ 133 (251)
T 1i4n_A 63 LEDFIRMYDEL-ADAISILT-EKHYFKGDPAFVRAARNLTCRPILAKDFYI-----DTV--QVKLASSVGADAILIIARI 133 (251)
T ss_dssp HHHHHHHHHHH-CSEEEEEC-CCSSSCCCTHHHHHHHTTCCSCEEEECCCC-----STH--HHHHHHHTTCSEEEEEGGG
T ss_pred HHHHHHHHHHh-CCceEEEe-cccccCCCHHHHHHHHHhCCCCEEEeeCCC-----CHH--HHHHHHHcCCCEEEEeccc
Confidence 34455544444 56666665 666777777777776666677777665442 122 355678899999999754
Q ss_pred --hhhHHHHHHHHHhCCCC
Q 002267 250 --PDTGLTIFSVAKSLGMT 266 (945)
Q Consensus 250 --~~~~~~~~~~a~~~g~~ 266 (945)
......+++.++++||.
T Consensus 134 l~~~~l~~l~~~a~~lGl~ 152 (251)
T 1i4n_A 134 LTAEQIKEIYEAAEELGMD 152 (251)
T ss_dssp SCHHHHHHHHHHHHTTTCE
T ss_pred CCHHHHHHHHHHHHHcCCe
Confidence 36788899999999874
No 380
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=30.51 E-value=3.9e+02 Score=27.27 Aligned_cols=115 Identities=17% Similarity=0.077 Sum_probs=68.4
Q ss_pred EEEEEEeccC-CccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcC-cEEEEccCChhHH
Q 002267 51 VRIGALFTYD-SVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENE-VVAAIGPQSSGIA 128 (945)
Q Consensus 51 i~IG~l~~l~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~-v~aiiGp~~s~~~ 128 (945)
=+||++.... ......-..|+.-|+++. |.+ ........+...+.+.+.++++++ +.||+.. +...+
T Consensus 175 ~~I~~i~~~~~~~~~~~R~~Gf~~al~~~--------g~~--~~~~~~~~~~~~~~~~~~~ll~~~~~~ai~~~-nd~~A 243 (333)
T 3jvd_A 175 MNIAALVGEESLSTTQERMRGISHAASIY--------GAE--VTFHFGHYSVESGEEMAQVVFNNGLPDALIVA-SPRLM 243 (333)
T ss_dssp CEEEEEESCTTSHHHHHHHHHHHHHHHHT--------TCE--EEEEECCSSHHHHHHHHHHHHHTCCCSEEEEC-CHHHH
T ss_pred CeEEEEeCCCCCccHHHHHHHHHHHHHHC--------CCC--EEEecCCCCHHHHHHHHHHHhcCCCCcEEEEC-CHHHH
Confidence 3577765543 223344567777777664 223 222215567788888888888763 7888874 45566
Q ss_pred HHHHHhhcccCc--c----EEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHH
Q 002267 129 HVISHVVNELNV--P----LLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLV 178 (945)
Q Consensus 129 ~~va~~~~~~~i--P----~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l 178 (945)
..+...+.+.++ | ++++.... +.....|-+-....+...++...++++
T Consensus 244 ~g~~~al~~~G~~vP~disvig~D~~~--~~~~~~p~lttv~~~~~~~g~~Av~~L 297 (333)
T 3jvd_A 244 AGVMRAFTRLNVRVPHDVVIGGYDDPE--WYSFVGAGITTFVPPHEEMGKEAVRLL 297 (333)
T ss_dssp HHHHHHHHHTTCCTTTTCEEEEESCCG--GGGGSTTSCEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCceEEEEECChH--HHHhcCCCceEEecCHHHHHHHHHHHH
Confidence 666666655443 3 66664332 333234556666677777787777765
No 381
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=30.41 E-value=40 Score=34.33 Aligned_cols=80 Identities=9% Similarity=-0.046 Sum_probs=54.1
Q ss_pred eEEEEEEEe--CCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcChhh-HHHHHHHH
Q 002267 184 REVIAIFVD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDT-GLTIFSVA 260 (945)
Q Consensus 184 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~~~-~~~~~~~a 260 (945)
++|+++..+ ++|.......+.+++++.|.++.....-. ..+.......++.+...++|.||+...... ....++++
T Consensus 6 ~~Igvi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~~ 84 (304)
T 3o1i_D 6 EKICAIYPHLKDSYWLSVNYGMVSEAEKQGVNLRVLEAGG-YPNKSRQEQQLALCTQWGANAIILGTVDPHAYEHNLKSW 84 (304)
T ss_dssp CEEEEEESCSCSHHHHHHHHHHHHHHHHHTCEEEEEECSS-TTCHHHHHHHHHHHHHHTCSEEEECCSSTTSSTTTHHHH
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCeEEEEcCCC-CCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHH
Confidence 578888754 66777888999999999999877643221 014445566777777788999998753322 23446666
Q ss_pred HhCCC
Q 002267 261 KSLGM 265 (945)
Q Consensus 261 ~~~g~ 265 (945)
. .|+
T Consensus 85 ~-~~i 88 (304)
T 3o1i_D 85 V-GNT 88 (304)
T ss_dssp T-TTS
T ss_pred c-CCC
Confidence 5 554
No 382
>3rf7_A Iron-containing alcohol dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: NAD EPE; 2.12A {Shewanella denitrificans}
Probab=30.26 E-value=80 Score=33.59 Aligned_cols=83 Identities=10% Similarity=0.007 Sum_probs=55.2
Q ss_pred HHHHHHHcCC---eEEEEEEEeCCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCC---ceEEEEE
Q 002267 174 VADLVEYYGW---REVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLME---SRVFVVH 247 (945)
Q Consensus 174 i~~~l~~~~w---~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~---~~vivl~ 247 (945)
+.++++.++. +++.+|++...... .+.+.+++.|+.+.....+.+.++.+.+...++.+++.+ +|+||-.
T Consensus 41 l~~~l~~~g~~~~~~~liVtd~~~~~~----~l~~~L~~~g~~~~~f~~v~~~pt~~~v~~~~~~~~~~~~~~~D~IIav 116 (375)
T 3rf7_A 41 LDTVLEQERTDANDFVVFLVDDVHQHK----PLAARVPNKAHDLVIYVNVDDEPTTVQVDELTAQVKAFNTKLPVSVVGL 116 (375)
T ss_dssp HHHHHHTTCCSTTCCEEEEEEGGGTTS----HHHHHSCCCTTSEEEEECCSSCCBHHHHHHHHHHHHHHCSSCCSEEEEE
T ss_pred HHHHHHHhcccCCCeEEEEECchhhhh----HHHHHHHhcCCeEEEEeCCCCCCCHHHHHHHHHHHHHhCCCCCCEEEEe
Confidence 5667777753 77777775443322 366777777877654445555567788888888887766 9999887
Q ss_pred cCh--hhHHHHHHHH
Q 002267 248 VNP--DTGLTIFSVA 260 (945)
Q Consensus 248 ~~~--~~~~~~~~~a 260 (945)
+.+ -++.+++...
T Consensus 117 GGGS~iD~AK~iA~~ 131 (375)
T 3rf7_A 117 GGGSTMDLAKAVSLM 131 (375)
T ss_dssp ESHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHH
Confidence 654 3556665443
No 383
>2hpg_A ABC transporter, periplasmic substrate-binding protein; periplasmic binding protein, thermophilic proteins, trap- transport; HET: MSE; 1.90A {Thermotoga maritima}
Probab=30.22 E-value=64 Score=33.63 Aligned_cols=60 Identities=15% Similarity=0.037 Sum_probs=43.2
Q ss_pred CCCCChHHhhcCCCCeEEeeCchHHHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceeEEecchhhH
Q 002267 700 SQIEGIDSLISSTEPIGVQDGSFAWNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYI 770 (945)
Q Consensus 700 ~~i~~~~dL~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~ 770 (945)
.+|++++||. |++|.+..+......++ .++.. .++. ...|...+|++ |.+|+.....+.+
T Consensus 148 ~pI~s~~DLk--G~KiRv~~~~~~~~~~~-alGa~---pv~m-~~~Evy~ALq~----G~VDg~~~p~~~~ 207 (327)
T 2hpg_A 148 KPIRKPEDLN--GLRIRTPGAPAWQESIR-SLGAI---PVAV-NFGEIYTAVQT----RAVDGAELTYANV 207 (327)
T ss_dssp SCCSSGGGGT--TCEEECCSSHHHHHHHH-HHTSE---EECC-CGGGHHHHHHT----TSCSEEEECHHHH
T ss_pred CCCCCHHHHC--CCEEEeCCCHHHHHHHH-HcCCE---eeec-CHHHHHHHHHc----CCeeEEECCHHHH
Confidence 6899999997 99998765444445553 55543 2333 56789999999 8999998866554
No 384
>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}
Probab=29.97 E-value=4.9e+02 Score=26.99 Aligned_cols=132 Identities=14% Similarity=0.103 Sum_probs=73.8
Q ss_pred EEEEEEeccCCccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc--CcEEEEccCChhHH
Q 002267 51 VRIGALFTYDSVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMEN--EVVAAIGPQSSGIA 128 (945)
Q Consensus 51 i~IG~l~~l~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~--~v~aiiGp~~s~~~ 128 (945)
-.|+.+|.-.+. ..+.+++.|+.++ +|..+.+...++.-.-...+..+.+.++. .++++=.+. .
T Consensus 71 K~la~lF~epST---RTR~SFE~A~~~L-------Gg~vi~l~~~~ss~~kgEsl~DTarvLs~y~D~IviR~~~-~--- 136 (340)
T 4ep1_A 71 KILGLIFDKHST---RTRVSFEAGMVQL-------GGHGMFLNGKEMQMGRGETVSDTAKVLSHYIDGIMIRTFS-H--- 136 (340)
T ss_dssp CEEEEEESSCCH---HHHHHHHHHHHHT-------TCEEEEEESCC------CCTTHHHHHHHHHCSEEEEECSC-H---
T ss_pred ceEEEEecCCCc---cHHHHHHHHHHHc-------CCeEEEcCcccccCCCCCCHHHHHHHHHHhCCEEEEecCC-h---
Confidence 358888876653 5788999999987 34555554333322111112222223333 444444432 2
Q ss_pred HHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHH---HHcC---CeEEEEEEEeCCcccchHHH
Q 002267 129 HVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLV---EYYG---WREVIAIFVDDDYGRNGISV 202 (945)
Q Consensus 129 ~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l---~~~~---w~~v~ii~~d~~~g~~~~~~ 202 (945)
..+..+++..++|+|.-+ +. ...| .+++++++ +++| ..+|+++. |. ...+..
T Consensus 137 ~~~~~lA~~~~vPVINag--~~----~~HP------------tQaLaDl~TI~E~~G~l~glkva~vG--D~--~nva~S 194 (340)
T 4ep1_A 137 ADVEELAKESSIPVINGL--TD----DHHP------------CQALADLMTIYEETNTFKGIKLAYVG--DG--NNVCHS 194 (340)
T ss_dssp HHHHHHHHHCSSCEEEEE--CS----SCCH------------HHHHHHHHHHHHHHSCCTTCEEEEES--CC--CHHHHH
T ss_pred hHHHHHHHhCCCCEEeCC--CC----CCCc------------HHHHHHHHHHHHHhCCCCCCEEEEEC--CC--chhHHH
Confidence 234556667789999732 21 1112 35666654 5554 46777774 22 457788
Q ss_pred HHHHHhhcCcEEEEee
Q 002267 203 LGDALSKKRAKISYKA 218 (945)
Q Consensus 203 l~~~l~~~g~~v~~~~ 218 (945)
+...+...|.+|....
T Consensus 195 l~~~~~~~G~~v~~~~ 210 (340)
T 4ep1_A 195 LLLASAKVGMHMTVAT 210 (340)
T ss_dssp HHHHHHHHTCEEEEEC
T ss_pred HHHHHHHcCCEEEEEC
Confidence 8888888898876543
No 385
>1vsq_C Mannose-specific phosphotransferase enzyme IIB component; sugar transport, complex (transferase/phosphocarrier, cytoplasm, membrane; HET: NEP; NMR {Escherichia coli} PDB: 2jzn_C 2jzo_D 2jzh_A
Probab=29.91 E-value=1.2e+02 Score=27.91 Aligned_cols=81 Identities=9% Similarity=0.070 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHcCCeEEEEEEEeCCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcC
Q 002267 170 QMHAVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN 249 (945)
Q Consensus 170 ~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~ 249 (945)
+++.+..+.++++.+++.++ +|..........+.+...-.|+++... +.++....+.+-+..+-++++++-+
T Consensus 17 HGQV~t~W~~~~~~~~IiVv-nD~vA~D~~~k~~lk~a~P~gvk~~i~-------sve~ai~~~~~~~~~~~~v~ll~k~ 88 (165)
T 1vsq_C 17 HGQVATRWTKETNVSRIIVV-SDEVAADTVRKTLLTQVAPPGVTAHVV-------DVAKMIRVYNNPKYAGERVMLLFTN 88 (165)
T ss_dssp CTTHHHHHHHHTTCSEEEEE-CHHHHTCHHHHHHHHHTCCTTCEEEEE-------CHHHHHHHHTCGGGTTCEEEEEESS
T ss_pred chheeeeeccccCCCEEEEe-CccccCCHHHHHHHHhcCCCCCeEEEE-------EHHHHHHHHhccccCCcEEEEEECC
Confidence 46677789999999999655 454444556666666666668776542 3455555666555567889999999
Q ss_pred hhhHHHHHH
Q 002267 250 PDTGLTIFS 258 (945)
Q Consensus 250 ~~~~~~~~~ 258 (945)
+.++.++++
T Consensus 89 p~d~~~lve 97 (165)
T 1vsq_C 89 PTDVERLVE 97 (165)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988753
No 386
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=29.46 E-value=1.6e+02 Score=30.37 Aligned_cols=68 Identities=7% Similarity=-0.059 Sum_probs=48.4
Q ss_pred HHcCCeEEEEEEEe--CCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcC
Q 002267 179 EYYGWREVIAIFVD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN 249 (945)
Q Consensus 179 ~~~~w~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~ 249 (945)
+.-.-+.|+++..+ ++|.....+.+.+++++.|..+..... ..+.......++.+...++|.||+...
T Consensus 54 ~~~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~---~~~~~~~~~~~~~l~~~~vdgiI~~~~ 123 (340)
T 1qpz_A 54 KVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNA---WNNLEKQRAYLSMMAQKRVDGLLVMCS 123 (340)
T ss_dssp HHTCCSEEEEEESCSCSHHHHHHHHHHHHHHHHTTCEEEEEEC---TTCHHHHHHHHHHHHHTTCSEEEECCS
T ss_pred ccCCCCEEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEEeC---CCCHHHHHHHHHHHHcCCCCEEEEeCC
Confidence 33345689998854 667778889999999999998765322 124444556677777788999998653
No 387
>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}
Probab=29.42 E-value=5e+02 Score=26.92 Aligned_cols=131 Identities=15% Similarity=0.178 Sum_probs=75.2
Q ss_pred EEEEEEeccCCccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc--CcEEEEccCChhHH
Q 002267 51 VRIGALFTYDSVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMEN--EVVAAIGPQSSGIA 128 (945)
Q Consensus 51 i~IG~l~~l~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~--~v~aiiGp~~s~~~ 128 (945)
=.|+.+|...+. ..+.+++.|+.++ +|..+.+...++.-.-...+..+.+.++. .++++=++. .+
T Consensus 64 k~la~lF~e~ST---RTR~SFE~A~~~L-------Gg~~i~l~~~~ssl~kgEsl~DTarvLs~~~D~IviR~~~-~~-- 130 (339)
T 4a8t_A 64 KSLGMIFQQSST---RTRVSFETAMEQL-------GGHGEYLAPGQIQLGGHETIEDTSRVLSRLVDILMARVER-HH-- 130 (339)
T ss_dssp CEEEEEESSCCS---HHHHHHHHHHHHT-------TCEEEEECCC-CCSSSSSCHHHHHHHHHHHCSEEEEECSS-HH--
T ss_pred ceEEEEecCCCc---hHHHHHHHHHHHc-------CCeEEEeCcccccCCCCcCHHHHHHHHHHhCCEEEEecCc-HH--
Confidence 467888877653 5788999999987 35555554434332111222222233333 444444442 23
Q ss_pred HHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHH---HHc--C----CeEEEEEEEeCCcccch
Q 002267 129 HVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLV---EYY--G----WREVIAIFVDDDYGRNG 199 (945)
Q Consensus 129 ~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l---~~~--~----w~~v~ii~~d~~~g~~~ 199 (945)
.+..+++..+||+|.-+ + +...| .+++++++ +++ | ..+|+++. |. ...
T Consensus 131 -~~~~lA~~~~vPVINag--~----~~~HP------------tQaLaDl~Ti~e~~~~G~~l~glkva~vG--D~--~rv 187 (339)
T 4a8t_A 131 -SIVDLANCATIPVINGM--S----DYNHP------------TQELGDLCTMVEHLPEGKKLEDCKVVFVG--DA--TQV 187 (339)
T ss_dssp -HHHHHHHHCSSCEEECC--C----SSCCH------------HHHHHHHHHHHHTCCTTCCGGGCEEEEES--SC--CHH
T ss_pred -HHHHHHHhCCCCEEECC--C----CCcCc------------HHHHHHHHHHHHHhhcCCCCCCCEEEEEC--CC--chh
Confidence 33455667789999732 2 11112 35677754 667 5 25676664 33 567
Q ss_pred HHHHHHHHhhcCcEEEEe
Q 002267 200 ISVLGDALSKKRAKISYK 217 (945)
Q Consensus 200 ~~~l~~~l~~~g~~v~~~ 217 (945)
+..+..++...|.+|...
T Consensus 188 a~Sl~~~~~~~G~~v~~~ 205 (339)
T 4a8t_A 188 CFSLGLITTKMGMNFVHF 205 (339)
T ss_dssp HHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHcCCEEEEE
Confidence 788888888899887654
No 388
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=29.17 E-value=1.3e+02 Score=30.39 Aligned_cols=79 Identities=10% Similarity=0.032 Sum_probs=56.8
Q ss_pred CCCeEEe--eCchHHHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceeEEecch---------hhHHHHhccCCcc
Q 002267 712 TEPIGVQ--DGSFAWNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDEL---------PYIELFMSKTNCE 780 (945)
Q Consensus 712 ~~~v~~~--~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~---------~~~~~~~~~~~~~ 780 (945)
..+|+++ .|+|.+.-....+ .++++.+.++++++|.+ |++|..+... ..++.+.+ .+
T Consensus 6 ~~~iaylGp~Gtfs~~Aa~~~f-----~~~p~~s~~~vf~aV~~----g~~d~gVvPiENS~~G~V~~t~DlL~~---~~ 73 (283)
T 2qmx_A 6 NWLIAYQGEPGAYSEIAALRFG-----EPLPCESFDDVFSAVTE----QKADYAVIPIENSLGGSIHQNYDLLLR---RP 73 (283)
T ss_dssp CCEEEEESCTTSHHHHHHHHHS-----EEEEESCHHHHHHHHHT----TSCSEEEEEEEESSSCBCHHHHHHHHH---SS
T ss_pred CcEEEEECCCCCHHHHHHHHHh-----HhCcCCCHHHHHHHHHC----CCCCEEEEeehhcCCCccHHHHHHhhc---CC
Confidence 3468886 6888777664433 57889999999999999 7877665531 23344433 36
Q ss_pred EEEeCccccccceEEEecCCCc
Q 002267 781 FRTVGQEFTKSGWGFAFQRDSP 802 (945)
Q Consensus 781 ~~~~~~~~~~~~~~~~~~k~sp 802 (945)
+.++++.+.....++...+|..
T Consensus 74 l~I~gE~~l~I~h~Ll~~~g~~ 95 (283)
T 2qmx_A 74 VVILAETFVKVEHCLLGLPGAS 95 (283)
T ss_dssp EEEEEEEEEECCCEEEECSSCC
T ss_pred cEEEEEEEEeeeeeEecCCCCC
Confidence 9999998888888888877643
No 389
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=29.09 E-value=1.3e+02 Score=25.37 Aligned_cols=58 Identities=7% Similarity=0.100 Sum_probs=39.2
Q ss_pred chHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEc--ChhhHHHHHHHHHhCC
Q 002267 198 NGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHV--NPDTGLTIFSVAKSLG 264 (945)
Q Consensus 198 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~--~~~~~~~~~~~a~~~g 264 (945)
.....+...+++.|..|... .+. ...+..+....+|+|++.. ...+...++++.++..
T Consensus 17 ~~~~~l~~~L~~~g~~v~~~------~~~---~~a~~~l~~~~~dlii~d~~l~~~~g~~~~~~l~~~~ 76 (132)
T 3lte_A 17 AMAAAIERVLKRDHWQVEIA------HNG---FDAGIKLSTFEPAIMTLDLSMPKLDGLDVIRSLRQNK 76 (132)
T ss_dssp HHHHHHHHHHHHTTCEEEEE------SSH---HHHHHHHHHTCCSEEEEESCBTTBCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHCCcEEEEe------CCH---HHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHhcC
Confidence 35667777888888876532 122 3445555667899999974 4456788888888765
No 390
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=28.72 E-value=1.2e+02 Score=28.69 Aligned_cols=68 Identities=15% Similarity=-0.028 Sum_probs=45.3
Q ss_pred HHcCCeEEEEEEEeCC-----cccchHHHHHHHHhh---cCcEEEEeecCCCCCChHHHHHHHHhhcc-CCceEEEEEc
Q 002267 179 EYYGWREVIAIFVDDD-----YGRNGISVLGDALSK---KRAKISYKAPFSPGASRSAINSLLVGANL-MESRVFVVHV 248 (945)
Q Consensus 179 ~~~~w~~v~ii~~d~~-----~g~~~~~~l~~~l~~---~g~~v~~~~~~~~~~~~~d~~~~l~~l~~-~~~~vivl~~ 248 (945)
.-+.--++++|...|+ .-......+.+.+++ .|.++.....++ .+.+.+...+++..+ .++|+||..+
T Consensus 10 ~v~~~~rv~IistGdEl~~g~~~D~n~~~L~~~L~~~~~~G~~v~~~~iv~--Dd~~~I~~al~~a~~~~~~DlVIttG 86 (189)
T 1jlj_A 10 NHDHQIRVGVLTVSDSCFRNLAEDRSGINLKDLVQDPSLLGGTISAYKIVP--DEIEEIKETLIDWCDEKELNLILTTG 86 (189)
T ss_dssp ---CCCEEEEEEECHHHHTTSSCCHHHHHHHHHHHCTTTTCCEEEEEEEEC--SCHHHHHHHHHHHHHTSCCSEEEEES
T ss_pred cccCCCEEEEEEECCccCCCcccchHHHHHHHHHhchhcCCcEEEEEEEeC--CCHHHHHHHHHHHhhcCCCCEEEEcC
Confidence 3344457888876443 112335667888887 799988877776 466778888887654 3789999875
No 391
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=28.44 E-value=83 Score=30.88 Aligned_cols=63 Identities=10% Similarity=-0.089 Sum_probs=45.2
Q ss_pred eEEEEEEEe--CCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcC
Q 002267 184 REVIAIFVD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN 249 (945)
Q Consensus 184 ~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~ 249 (945)
+.|+++..+ ++|.......+.+++++.|..+..... . .+...-...++.+...++|.||+...
T Consensus 3 ~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~--~~~~~~~~~~~~l~~~~vdgiI~~~~ 67 (255)
T 1byk_A 3 KVVAIIVTRLDSLSENLAVQTMLPAFYEQGYDPIMMES-Q--FSPQLVAEHLGVLKRRNIDGVVLFGF 67 (255)
T ss_dssp CEEEEEESCTTCHHHHHHHHHHHHHHHHHTCEEEEEEC-T--TCHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred CEEEEEeCCCCCccHHHHHHHHHHHHHHcCCEEEEEeC-C--CcHHHHHHHHHHHHhcCCCEEEEecC
Confidence 568888754 567777889999999999988765432 1 23444456777887788999888753
No 392
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=28.18 E-value=32 Score=34.35 Aligned_cols=84 Identities=11% Similarity=0.100 Sum_probs=50.1
Q ss_pred HHHHHHHHHH-----HcCCeEEEEEEEeCCcccchHHHHHHHHhhcCcEEEEeecCCCC---CChHHHHHHHHhhccCCc
Q 002267 170 QMHAVADLVE-----YYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPG---ASRSAINSLLVGANLMES 241 (945)
Q Consensus 170 ~~~ai~~~l~-----~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~---~~~~d~~~~l~~l~~~~~ 241 (945)
.++.+++.+. ...-++|.++..+ ...+.+.+.|+++|.+|.....|... ....++. ..+...+.
T Consensus 115 ~~e~L~~~l~~~~~~~~~~~~vL~~rg~-----~~r~~L~~~L~~~G~~v~~~~vY~~~~~~~~~~~~~---~~l~~~~~ 186 (254)
T 4es6_A 115 DSEALLALPAFQDSLRVHDPKVLIMRGE-----GGREFLAERLRGQGVQVDYLPLYRRRAPDYPAGELL---ARVRAERL 186 (254)
T ss_dssp SHHHHHTCHHHHHHTCSSSCEEEEEECS-----SCCCHHHHHHHHTTCEEEEEECEEEECCCCCTTHHH---HHHHHTTC
T ss_pred CHHHHHHhHhhcccccCCCCEEEEEcCC-----ccHHHHHHHHHHCCCEEEEEeEEEeeCCCCCHHHHH---HHHHhCCC
Confidence 4567777654 3455788766533 34456788899999987665444321 1223333 33444567
Q ss_pred eEEEEEcChhhHHHHHHHHHh
Q 002267 242 RVFVVHVNPDTGLTIFSVAKS 262 (945)
Q Consensus 242 ~vivl~~~~~~~~~~~~~a~~ 262 (945)
|+|+ +.++..+..+++.+.+
T Consensus 187 d~v~-ftS~s~v~~~~~~~~~ 206 (254)
T 4es6_A 187 NGLV-VSSGQGLQNLYQLAAA 206 (254)
T ss_dssp CEEE-CCSHHHHHHHHHHHGG
T ss_pred CEEE-EcCHHHHHHHHHHhhH
Confidence 7765 5677777777776643
No 393
>3okf_A 3-dehydroquinate synthase; structural genomics, center for structural genomics of infec diseases, csgid, NAD, lyase; HET: NAD; 2.50A {Vibrio cholerae o1 biovar eltor}
Probab=28.00 E-value=98 Score=33.08 Aligned_cols=95 Identities=8% Similarity=-0.020 Sum_probs=59.9
Q ss_pred HHHHcCCeEEEEEEEeCCcccchHHHHHHHHhhcCcEEEEeecCC---CCCChHHHHHHHHhhccCCc---eEEEEEcCh
Q 002267 177 LVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFS---PGASRSAINSLLVGANLMES---RVFVVHVNP 250 (945)
Q Consensus 177 ~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~---~~~~~~d~~~~l~~l~~~~~---~vivl~~~~ 250 (945)
+++.++.+++.+|++...+.. ..+.+.+.|++.|+++... .++ +..+.+.+...++.+++.+. |+||-.+.+
T Consensus 56 ~l~~~~~~rvlIVtd~~v~~~-~~~~v~~~L~~~g~~~~~~-~~~~gE~~kt~~~v~~~~~~l~~~~~~R~d~IIAvGGG 133 (390)
T 3okf_A 56 LLSLSAKQKVVIVTNHTVAPL-YAPAIISLLDHIGCQHALL-ELPDGEQYKTLETFNTVMSFLLEHNYSRDVVVIALGGG 133 (390)
T ss_dssp GGCCCTTCEEEEEEETTTHHH-HHHHHHHHHHHHTCEEEEE-EECSSGGGCBHHHHHHHHHHHHHTTCCTTCEEEEEESH
T ss_pred HHHhcCCCEEEEEECCcHHHH-HHHHHHHHHHHcCCeEEEE-EECCCcCCchHHHHHHHHHHHHhcCCCcCcEEEEECCc
Confidence 444557789988886655443 7788999999999876432 122 12356677788888877766 677766544
Q ss_pred --hhHHHHHHHHHhCCCCCCCeEEEEeC
Q 002267 251 --DTGLTIFSVAKSLGMTAGSYVWIATD 276 (945)
Q Consensus 251 --~~~~~~~~~a~~~g~~~~~~~wi~~~ 276 (945)
-+...++......| -.++-|-|.
T Consensus 134 sv~D~ak~~Aa~~~rg---ip~I~IPTT 158 (390)
T 3okf_A 134 VIGDLVGFAAACYQRG---VDFIQIPTT 158 (390)
T ss_dssp HHHHHHHHHHHHBTTC---CEEEEEECS
T ss_pred HHhhHHHHHHHHhcCC---CCEEEeCCC
Confidence 45666665444444 234555554
No 394
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=27.91 E-value=39 Score=35.88 Aligned_cols=82 Identities=12% Similarity=-0.023 Sum_probs=52.8
Q ss_pred HHHHHHHHHcCCeEEEEEEEeCCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcChh
Q 002267 172 HAVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPD 251 (945)
Q Consensus 172 ~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~~ 251 (945)
+.+.++++.+|.+++.+|++...++ ..+.+.+.|+ .. +.+. .+.+.++.+.+...++.+++.++|+||-.+.+.
T Consensus 26 ~~l~~~l~~~g~~rvliVtd~~~~~--~~~~v~~~L~--~~-~~f~-~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGs 99 (364)
T 3iv7_A 26 AFLKQEVERRGSAKVMVIAGEREMS--IAHKVASEIE--VA-IWHD-EVVMHVPIEVAERARAVATDNEIDLLVCVGGGS 99 (364)
T ss_dssp HHHHHHHHHHTCSSEEEECCGGGHH--HHHHHTTTSC--CS-EEEC-CCCTTCBHHHHHHHHHHHHHTTCCEEEEEESHH
T ss_pred HHHHHHHHHcCCCEEEEEECCCHHH--HHHHHHHHcC--CC-EEEc-ceecCCCHHHHHHHHHHHHhcCCCEEEEeCCcH
Confidence 4467788889999998887654332 3344444444 11 2332 233345678888888888899999998876543
Q ss_pred --hHHHHHHH
Q 002267 252 --TGLTIFSV 259 (945)
Q Consensus 252 --~~~~~~~~ 259 (945)
++.+++..
T Consensus 100 ~iD~aK~iA~ 109 (364)
T 3iv7_A 100 TIGLAKAIAM 109 (364)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 55555543
No 395
>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A
Probab=27.73 E-value=5.4e+02 Score=26.81 Aligned_cols=132 Identities=15% Similarity=0.173 Sum_probs=77.8
Q ss_pred EEEEEEeccCCccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc--CcEEEEccCChhHH
Q 002267 51 VRIGALFTYDSVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMEN--EVVAAIGPQSSGIA 128 (945)
Q Consensus 51 i~IG~l~~l~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~--~v~aiiGp~~s~~~ 128 (945)
-.|+.+|...+. ..+.+++.|+.++ +|..+.+...++.-.-...+..+.+.++. .++++=.+ ..+
T Consensus 42 K~la~lF~epST---RTR~SFE~A~~~L-------Gg~vi~l~~~~ssl~kgEsl~DTarvLs~y~D~IviR~~-~~~-- 108 (355)
T 4a8p_A 42 KSLGMIFQQSST---RTRVSFETAMEQL-------GGHGEYLAPGQIQLGGHETIEDTSRVLSRLVDILMARVE-RHH-- 108 (355)
T ss_dssp CEEEEEESSCCS---HHHHHHHHHHHHT-------TCEEEEECBTTBCBTTTBCHHHHHHHHTTTCSEEEEECS-SHH--
T ss_pred CEEEEEecCCCh---hhHhhHHHHHHHc-------CCeEEEeCcccccCCCCcCHHHHHHHHHHhCCEEEEecC-cHH--
Confidence 457888877654 5788999999997 35556554444432222233344444555 34433343 223
Q ss_pred HHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHH---HHc--C----CeEEEEEEEeCCcccch
Q 002267 129 HVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLV---EYY--G----WREVIAIFVDDDYGRNG 199 (945)
Q Consensus 129 ~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l---~~~--~----w~~v~ii~~d~~~g~~~ 199 (945)
.+..+++..+||+|.-+ + +...| .+++++++ +++ | ..+|++|. |. ...
T Consensus 109 -~~~~lA~~~~vPVINag--~----~~~HP------------tQaLaDl~TI~E~~~~G~~l~glkva~vG--D~--~rv 165 (355)
T 4a8p_A 109 -SIVDLANCATIPVINGM--S----DYNHP------------TQELGDLCTMVEHLPEGKKLEDCKVVFVG--DA--TQV 165 (355)
T ss_dssp -HHHHHHHHCSSCEEECC--C----SSCCH------------HHHHHHHHHHHHTCCTTCCGGGCEEEEES--CC--CHH
T ss_pred -HHHHHHHhCCCCEEeCC--C----CCCCc------------HHHHHHHHHHHHHhhcCCCCCCCEEEEEC--CC--chh
Confidence 33455667789999732 2 11112 35677754 667 5 25676664 33 557
Q ss_pred HHHHHHHHhhcCcEEEEee
Q 002267 200 ISVLGDALSKKRAKISYKA 218 (945)
Q Consensus 200 ~~~l~~~l~~~g~~v~~~~ 218 (945)
+..+...+...|.+|....
T Consensus 166 a~Sl~~~~~~~G~~v~~~~ 184 (355)
T 4a8p_A 166 CFSLGLITTKMGMNFVHFG 184 (355)
T ss_dssp HHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHcCCEEEEEC
Confidence 7888888888998876543
No 396
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=27.51 E-value=1.6e+02 Score=25.92 Aligned_cols=58 Identities=10% Similarity=0.017 Sum_probs=40.9
Q ss_pred chHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEc--ChhhHHHHHHHHHhCC
Q 002267 198 NGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHV--NPDTGLTIFSVAKSLG 264 (945)
Q Consensus 198 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~--~~~~~~~~~~~a~~~g 264 (945)
.....+.+.+++.|..|... . + ....+..++...+|+|++.. ...+...+++.+++..
T Consensus 18 ~~~~~l~~~L~~~g~~v~~~---~---~---~~~al~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~ 77 (154)
T 3gt7_A 18 TQAEHLKHILEETGYQTEHV---R---N---GREAVRFLSLTRPDLIISDVLMPEMDGYALCRWLKGQP 77 (154)
T ss_dssp HHHHHHHHHHHTTTCEEEEE---S---S---HHHHHHHHTTCCCSEEEEESCCSSSCHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHCCCEEEEe---C---C---HHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCC
Confidence 45677888888888776422 1 2 34556667777899999975 4556788888888764
No 397
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=27.15 E-value=1.4e+02 Score=25.02 Aligned_cols=58 Identities=10% Similarity=0.042 Sum_probs=39.3
Q ss_pred chHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEc--ChhhHHHHHHHHHhCC
Q 002267 198 NGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHV--NPDTGLTIFSVAKSLG 264 (945)
Q Consensus 198 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~--~~~~~~~~~~~a~~~g 264 (945)
.....+...+++.|.++... . + ....+..++...+|+|++.. ...+...++++.++..
T Consensus 13 ~~~~~l~~~l~~~g~~v~~~---~---~---~~~al~~l~~~~~dlvllD~~~p~~~g~~~~~~l~~~~ 72 (122)
T 3gl9_A 13 VLRKIVSFNLKKEGYEVIEA---E---N---GQIALEKLSEFTPDLIVLXIMMPVMDGFTVLKKLQEKE 72 (122)
T ss_dssp HHHHHHHHHHHHTTCEEEEE---S---S---HHHHHHHHTTBCCSEEEECSCCSSSCHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHCCcEEEEe---C---C---HHHHHHHHHhcCCCEEEEeccCCCCcHHHHHHHHHhcc
Confidence 35566777888888876521 1 2 24456666677899999863 4557788888887654
No 398
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=26.85 E-value=2.1e+02 Score=28.27 Aligned_cols=85 Identities=15% Similarity=0.094 Sum_probs=61.1
Q ss_pred HHHHHHHcCCeEEEEEEEeCCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEc---Ch
Q 002267 174 VADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHV---NP 250 (945)
Q Consensus 174 i~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~---~~ 250 (945)
++++.+ -|..-+.+++ |..|..+..+.+...-+..++.|-.+..+- +. -++.+.+..++|+|++.. +.
T Consensus 69 iA~~~~-~GA~aiSVLT-d~~~F~Gs~~~L~~vr~~v~lPvLrKDFii---d~----yQI~eAr~~GADaILLI~a~L~~ 139 (258)
T 4a29_A 69 YAKFME-RYAVGLSITT-EEKYFNGSYETLRKIASSVSIPILMSDFIV---KE----SQIDDAYNLGADTVLLIVKILTE 139 (258)
T ss_dssp HHHHHT-TTCSEEEEEC-CSTTTCCCHHHHHHHHTTCSSCEEEESCCC---SH----HHHHHHHHHTCSEEEEEGGGSCH
T ss_pred HHHHHh-CCCeEEEEeC-CCCCCCCCHHHHHHHHHhcCCCEeeccccc---cH----HHHHHHHHcCCCeeehHHhhcCH
Confidence 455554 3777777775 666778888888877777777777665442 22 346666778999999864 56
Q ss_pred hhHHHHHHHHHhCCCCC
Q 002267 251 DTGLTIFSVAKSLGMTA 267 (945)
Q Consensus 251 ~~~~~~~~~a~~~g~~~ 267 (945)
.....+...|.++||..
T Consensus 140 ~~l~~l~~~A~~lGl~~ 156 (258)
T 4a29_A 140 RELESLLEYARSYGMEP 156 (258)
T ss_dssp HHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHhHHH
Confidence 67889999999999965
No 399
>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A
Probab=26.63 E-value=3.3e+02 Score=27.79 Aligned_cols=134 Identities=17% Similarity=0.149 Sum_probs=76.0
Q ss_pred EEEEEEeccCCccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc-CcEEEE--ccCChhH
Q 002267 51 VRIGALFTYDSVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMEN-EVVAAI--GPQSSGI 127 (945)
Q Consensus 51 i~IG~l~~l~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~-~v~aii--Gp~~s~~ 127 (945)
-.|+.+|-..+. ..+.+++.|+.++ +|..+.+...++.-.-...+.-+.+-++. ++.+|+ .+. .+.
T Consensus 37 k~la~lF~e~ST---RTR~SFE~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvLs~~~~D~iviR~~~-~~~ 105 (304)
T 3r7f_A 37 KFAANLFFEPST---RTRFSFEVAEKKL-------GMNVLNLDGTSTSVQKGETLYDTIRTLESIGVDVCVIRHSE-DEY 105 (304)
T ss_dssp CEEEEEESSCCS---HHHHHHHHHHHHT-------TCEEEEEETTSTTSCSSSCHHHHHHHHHHHTCCEEEEECSS-TTC
T ss_pred CEEEEEecCCCh---hHHHhHHHHHHHC-------CCeEEEECcccccCCCCCCHHHHHHHHHHhcCCEEEEecCC-hhH
Confidence 358888877653 5788999999987 35566664444432212223333333343 454444 332 233
Q ss_pred HHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHH---HHcC---CeEEEEEEEeCCcccchHH
Q 002267 128 AHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLV---EYYG---WREVIAIFVDDDYGRNGIS 201 (945)
Q Consensus 128 ~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l---~~~~---w~~v~ii~~d~~~g~~~~~ 201 (945)
. ..+++..+||+|.-+.++ ...| .+++++++ +++| ..+|+++. |.-....+.
T Consensus 106 ~---~~la~~~~vPVINagdg~-----~~HP------------tQaLaDl~Ti~e~~g~l~glkva~vG--D~~~~rva~ 163 (304)
T 3r7f_A 106 Y---EELVSQVNIPILNAGDGC-----GQHP------------TQSLLDLMTIYEEFNTFKGLTVSIHG--DIKHSRVAR 163 (304)
T ss_dssp H---HHHHHHCSSCEEESCCTT-----SCCH------------HHHHHHHHHHHHHHSCCTTCEEEEES--CCTTCHHHH
T ss_pred H---HHHHHhCCCCEEeCCCCC-----CcCc------------HHHHHHHHHHHHHhCCCCCCEEEEEc--CCCCcchHH
Confidence 3 344566789999732111 1112 35666654 5554 46777664 322234677
Q ss_pred HHHHHHhhcCcEEEEe
Q 002267 202 VLGDALSKKRAKISYK 217 (945)
Q Consensus 202 ~l~~~l~~~g~~v~~~ 217 (945)
.+...+...|.+|...
T Consensus 164 Sl~~~~~~~G~~v~~~ 179 (304)
T 3r7f_A 164 SNAEVLTRLGARVLFS 179 (304)
T ss_dssp HHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHcCCEEEEE
Confidence 7888888889887654
No 400
>3cvg_A Putative metal binding protein; PSI-II, NYSGXRC, periplasmic, structural GENO protein structure initiative; 1.97A {Coccidioides immitis}
Probab=26.45 E-value=26 Score=35.98 Aligned_cols=74 Identities=7% Similarity=0.099 Sum_probs=49.2
Q ss_pred eeeHHHHHHHHHh---C---CCCccEEEEEcCCCCCCCCHHHHHHHHHcCcccEEEecEEEecCcc--eeEEe-cc-ccc
Q 002267 512 GYCIDVFEAAVNL---L---PYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDITIVTNRT--KLVDF-TQ-PYM 581 (945)
Q Consensus 512 G~~~dll~~l~~~---l---~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~~~~t~~r~--~~~df-s~-p~~ 581 (945)
.+..+++..+.++ . +.+ +++.. ++...++++|.+|++|+++..-....+.. ..+.+ .. |+.
T Consensus 33 ~~lp~ll~~F~~~~~~~~~P~v~--v~l~~-------~~s~~l~~~l~~G~~Dl~i~~~~~~~~~l~~~~~~~~~~~~l~ 103 (294)
T 3cvg_A 33 GLVKELADAFIKSKVDSGSAPFK--VAWYK-------SDTTVTINYLKDGIVDVGITYSPVAERISIKHGISESPSYYAF 103 (294)
T ss_dssp THHHHHHHHHHHHHHSCC---CE--EEEEE-------CCHHHHHHHHHTTSCSEEEESCHHHHHHHHHTTSBCSSCEEEE
T ss_pred HHHHHHHHHHHhhhcccCCCCeE--EEEEe-------CCHHHHHHHHHcCCCcEEEEcCchhhhHHHhCCcccceeeeEE
Confidence 4567789999888 6 544 66654 67899999999999999875321111100 01112 24 888
Q ss_pred ccceEEEEEccCC
Q 002267 582 ESGLVVVAPVQKL 594 (945)
Q Consensus 582 ~~~~~~vv~~~~~ 594 (945)
...+++++|...+
T Consensus 104 ~d~lvlv~~~~hp 116 (294)
T 3cvg_A 104 RDHFMLIGPPSNP 116 (294)
T ss_dssp EEEEEEEECTTCT
T ss_pred eccEEEEecCCCh
Confidence 8999999987764
No 401
>3kn3_A Putative periplasmic protein; alpha-beta structure, periplasmic binding protein fold, STRU genomics, PSI-2, protein structure initiative; HET: GSH CIT; 2.41A {Wolinella succinogenes}
Probab=26.44 E-value=27 Score=34.65 Aligned_cols=74 Identities=9% Similarity=-0.112 Sum_probs=51.0
Q ss_pred eeeeHHHHHHHHHhCCCCccEEEEEcCCCCCCCCHHHHHHHHHcCcccEEEecEEEecCcc---eeEEecccccccceEE
Q 002267 511 KGYCIDVFEAAVNLLPYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDITIVTNRT---KLVDFTQPYMESGLVV 587 (945)
Q Consensus 511 ~G~~~dll~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~~~~t~~r~---~~~dfs~p~~~~~~~~ 587 (945)
.|+.-+|...+.+..|.++.+.+ +.-..++.++.+|.+|+.+..-....+.. ....-..+|....+++
T Consensus 18 s~ll~eL~~~Fek~~gv~V~~~~---------~gSg~ll~qi~~G~aDVfisa~~~~~~~l~~~G~~~~~~~~a~N~LVL 88 (242)
T 3kn3_A 18 TGLLDVLAPAYKKDTGVDLKWVA---------VGTGNALKLGENCDVDVVFVHAPKVELEYVEKGFGIDRTPVMYNDFVI 88 (242)
T ss_dssp HTHHHHHHHHHHHHHSCEEEEEE---------ECHHHHHHHHHTTCCSEEEECCHHHHHHHHHHTSEEEEEEEECSCEEE
T ss_pred chHHHHHHHHHHHHhCCeEEEEE---------cCcHHHHHHHhcCCCCEEEecChHhHHHHHhcCCCccceEEEcceEEE
Confidence 35667788888888887755555 44678999999999999876332222211 1112246888899999
Q ss_pred EEEccC
Q 002267 588 VAPVQK 593 (945)
Q Consensus 588 vv~~~~ 593 (945)
++|+.+
T Consensus 89 V~P~~~ 94 (242)
T 3kn3_A 89 IGNPSF 94 (242)
T ss_dssp EECTHH
T ss_pred EEeCCC
Confidence 999865
No 402
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=26.41 E-value=27 Score=34.01 Aligned_cols=31 Identities=23% Similarity=0.320 Sum_probs=28.4
Q ss_pred CcEEEEccCChhHHHHHHHhhcccCccEEec
Q 002267 115 EVVAAIGPQSSGIAHVISHVVNELNVPLLSF 145 (945)
Q Consensus 115 ~v~aiiGp~~s~~~~~va~~~~~~~iP~Is~ 145 (945)
+++.|+||..|+-.-....+++.+++|+||.
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~g~~hIst 60 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKFHFNHLSS 60 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHCCEEECH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHCCceEcH
Confidence 7899999999999888889999999999974
No 403
>1sg6_A Pentafunctional AROM polypeptide; shikimate pathway, aromatic amino acid biosynthesis, DHQS, O form J, domain movement, cyclase, lyase; HET: NAD; 1.70A {Emericella nidulans} SCOP: e.22.1.1 PDB: 1nr5_A* 1nrx_A* 1nua_A 1nva_A* 1nvb_A* 1nvd_A* 1nve_A* 1nvf_A* 1dqs_A*
Probab=25.69 E-value=1.6e+02 Score=31.43 Aligned_cols=94 Identities=11% Similarity=0.021 Sum_probs=60.2
Q ss_pred HHHcCCeEEEEEEEeCCcccchHHHHHHHHhhc------CcEEEEeecCCC---CCChHHHHHHHHhhccCC--c---eE
Q 002267 178 VEYYGWREVIAIFVDDDYGRNGISVLGDALSKK------RAKISYKAPFSP---GASRSAINSLLVGANLME--S---RV 243 (945)
Q Consensus 178 l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~------g~~v~~~~~~~~---~~~~~d~~~~l~~l~~~~--~---~v 243 (945)
++.++.+++.+|++...+.. ..+.+.+.+++. |+++.. ..++. ..+.+.+....+.+++.+ . |+
T Consensus 31 ~~~~~~~k~liVtd~~v~~~-~~~~v~~~L~~~~~~~~~g~~~~~-~~~~~gE~~k~~~~v~~~~~~~~~~~~~~~r~d~ 108 (393)
T 1sg6_A 31 ISDCSSTTYVLVTDTNIGSI-YTPSFEEAFRKRAAEITPSPRLLI-YNRPPGEVSKSRQTKADIEDWMLSQNPPCGRDTV 108 (393)
T ss_dssp HHHSCCSEEEEEEEHHHHHH-HHHHHHHHHHHHHHHSSSCCEEEE-EEECSSGGGSSHHHHHHHHHHHHTSSSCCCTTCE
T ss_pred HHhcCCCeEEEEECCcHHHH-HHHHHHHHHHhhhccccCCceeEE-EEeCCCCCCCCHHHHHHHHHHHHHcCCCCCCCCE
Confidence 46678889988886544333 567777777776 776642 22332 235567778888887777 7 88
Q ss_pred EEEEcC--hhhHHHHHHHHHhCCCCCCCeEEEEeC
Q 002267 244 FVVHVN--PDTGLTIFSVAKSLGMTAGSYVWIATD 276 (945)
Q Consensus 244 ivl~~~--~~~~~~~~~~a~~~g~~~~~~~wi~~~ 276 (945)
||-.+. .-+...++......|+ .++-|-|.
T Consensus 109 iIalGGGsv~D~ak~~Aa~~~rgi---p~i~IPTT 140 (393)
T 1sg6_A 109 VIALGGGVIGDLTGFVASTYMRGV---RYVQVPTT 140 (393)
T ss_dssp EEEEESHHHHHHHHHHHHHGGGCC---EEEEEECS
T ss_pred EEEECCcHHHHHHHHHHHHhcCCC---CEEEECCc
Confidence 886654 4567777766555553 34555554
No 404
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=25.67 E-value=33 Score=33.10 Aligned_cols=30 Identities=17% Similarity=0.311 Sum_probs=26.7
Q ss_pred cEEEEccCChhHHHHHHHhhcccCccEEec
Q 002267 116 VVAAIGPQSSGIAHVISHVVNELNVPLLSF 145 (945)
Q Consensus 116 v~aiiGp~~s~~~~~va~~~~~~~iP~Is~ 145 (945)
+..++||.+|+-.-....+++.+++|+||.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~ist 31 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHIST 31 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEcH
Confidence 467899999999888899999999999984
No 405
>3eye_A PTS system N-acetylgalactosamine-specific IIB component 1; structural genomics, phosphotransferase, PSI-2, protein structure initiative; 1.45A {Escherichia coli O157} SCOP: c.38.1.0
Probab=25.60 E-value=1.5e+02 Score=27.38 Aligned_cols=81 Identities=10% Similarity=0.039 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHcCCeEEEEEEEeCCcccchHHHHHHHHhhc-CcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEc
Q 002267 170 QMHAVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKK-RAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHV 248 (945)
Q Consensus 170 ~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~-g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~ 248 (945)
.++.+..+.+.++.+++.++ +|..........+.+.+.-. |+++... +.++....+.+-+ .+-++++++-
T Consensus 19 HGQVat~W~k~~~~~~IiVv-nD~vA~D~~~k~~lkmA~P~~gvk~~i~-------sve~ai~~~~~~~-~~~~v~il~k 89 (168)
T 3eye_A 19 HGQVGVTWTSTIGANLLVVV-DDVVANDDIQQKLMGITAETYGFGIRFF-------TIEKTINVIGKAA-PHQKIFLICR 89 (168)
T ss_dssp TTHHHHHHHHHHTCSEEEEE-CHHHHHSGGGGHHHHHHHHHHTCEEEEE-------CHHHHHHHGGGCC-TTCCEEEEES
T ss_pred chhhhheeccccCCCEEEEE-cccccCCHHHHHHHHhcCCCCCCeEEEE-------EHHHHHHHHhccc-CCceEEEEEC
Confidence 46778889999999999666 44444444555555555545 8877532 3445555555544 5678999999
Q ss_pred ChhhHHHHHHH
Q 002267 249 NPDTGLTIFSV 259 (945)
Q Consensus 249 ~~~~~~~~~~~ 259 (945)
++.++.++++.
T Consensus 90 ~p~d~~~lve~ 100 (168)
T 3eye_A 90 TPQTVRKLVEG 100 (168)
T ss_dssp SHHHHHHHHHT
T ss_pred CHHHHHHHHHc
Confidence 99999888654
No 406
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=25.51 E-value=3.7e+02 Score=24.32 Aligned_cols=92 Identities=3% Similarity=-0.142 Sum_probs=54.0
Q ss_pred HHHHHHHHcCCeEEEEEEEeCCcccchHHHHHHHHhhcCcEEEEeecC--CC--CCChHHHHHHHHhhc-cCCceEEEEE
Q 002267 173 AVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPF--SP--GASRSAINSLLVGAN-LMESRVFVVH 247 (945)
Q Consensus 173 ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~--~~--~~~~~d~~~~l~~l~-~~~~~vivl~ 247 (945)
.+.+.+...|--..+..|. +..+......+.++|...|+++...-.. +. ..+..|+.-.+.-+. ....|.+++.
T Consensus 37 ~l~~~~~~~g~l~~~~~Y~-~~~~~~~~~~~~~~L~~~g~~v~~~p~~~~~~~~~k~~~Dv~laiD~~~~a~~~d~~vLv 115 (165)
T 2qip_A 37 QFWYVATQEKEVVSAKAYA-IASNDPKQRQFHHILRGVGFEVMLKPYIQRRDGSAKGDWDVGITLDAIEIAPDVDRVILV 115 (165)
T ss_dssp HHHHHHTTTEEEEEEEEEE-CCCCCHHHHHHHHHHHHHTCEEEECCCCCCSSCCCSCCCHHHHHHHHHHHGGGCSEEEEE
T ss_pred HHHHHHhcCCEEEEEEEEE-ccCCchhHHHHHHHHHHCCcEEEEEeeeeccCCccCCCccHHHHHHHHHhhccCCEEEEE
Confidence 4444444444333334453 2223345677889999999988753211 11 123445433333222 2457888888
Q ss_pred cChhhHHHHHHHHHhC-CC
Q 002267 248 VNPDTGLTIFSVAKSL-GM 265 (945)
Q Consensus 248 ~~~~~~~~~~~~a~~~-g~ 265 (945)
+...+...+++.+++. |.
T Consensus 116 SgD~DF~plv~~lr~~~G~ 134 (165)
T 2qip_A 116 SGDGDFSLLVERIQQRYNK 134 (165)
T ss_dssp CCCGGGHHHHHHHHHHHCC
T ss_pred ECChhHHHHHHHHHHHcCc
Confidence 8888999999999985 84
No 407
>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}
Probab=25.46 E-value=5.5e+02 Score=26.14 Aligned_cols=131 Identities=15% Similarity=0.109 Sum_probs=75.6
Q ss_pred EEEEEeccCCccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc--CcEEEEccCChhHHH
Q 002267 52 RIGALFTYDSVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMEN--EVVAAIGPQSSGIAH 129 (945)
Q Consensus 52 ~IG~l~~l~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~--~v~aiiGp~~s~~~~ 129 (945)
.|+.+|.-.+. ..+.+++.|+.++ +|..+.+...++.-.-...+.-+.+.++. .++++=.+. .+
T Consensus 38 ~la~lF~e~ST---RTR~SFe~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~~-~~--- 103 (307)
T 3tpf_A 38 TLAMIFEKNST---RTRMAFELAITEL-------GGKALFLSSNDLQLSRGEPVKDTARVIGAMVDFVMMRVNK-HE--- 103 (307)
T ss_dssp EEEEEESSCCH---HHHHHHHHHHHHT-------TCEEEEECTTTCCTTTSSCHHHHHHHHHHHSSEEEEECSC-HH---
T ss_pred EEEEEecCCCc---chHHhHHHHHHHc-------CCeEEEcCcccccCCCCCCHHHHHHHHHHhCCEEEEecCC-hH---
Confidence 47888877653 5788999999987 35555554444332111222222233333 444443442 22
Q ss_pred HHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHH---HHcC----CeEEEEEEEeCCcccchHHH
Q 002267 130 VISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLV---EYYG----WREVIAIFVDDDYGRNGISV 202 (945)
Q Consensus 130 ~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l---~~~~----w~~v~ii~~d~~~g~~~~~~ 202 (945)
.+..+++..++|+|.-+ +. ...| .+++++++ +++| -.+|+++.+ +...+..
T Consensus 104 ~~~~lA~~~~vPVINag--~~----~~HP------------tQaLaDl~Ti~e~~g~l~~gl~va~vGD----~~~va~S 161 (307)
T 3tpf_A 104 TLLEFARYSKAPVINAL--SE----LYHP------------TQVLGDLFTIKEWNKMQNGIAKVAFIGD----SNNMCNS 161 (307)
T ss_dssp HHHHHHHHCSSCEEEEE--CS----SCCH------------HHHHHHHHHHHHTTCCGGGCCEEEEESC----SSHHHHH
T ss_pred HHHHHHHhCCCCEEeCC--CC----CcCc------------HHHHHHHHHHHHHhCCCCCCCEEEEEcC----CCccHHH
Confidence 34556667789999732 21 1112 36677754 5554 346776652 3567888
Q ss_pred HHHHHhhcCcEEEEee
Q 002267 203 LGDALSKKRAKISYKA 218 (945)
Q Consensus 203 l~~~l~~~g~~v~~~~ 218 (945)
+...+...|.+|....
T Consensus 162 l~~~~~~~G~~v~~~~ 177 (307)
T 3tpf_A 162 WLITAAILGFEISIAM 177 (307)
T ss_dssp HHHHHHHHTCEEEEEC
T ss_pred HHHHHHHcCCEEEEEC
Confidence 8888888898876543
No 408
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=25.10 E-value=2.1e+02 Score=24.39 Aligned_cols=58 Identities=12% Similarity=0.028 Sum_probs=38.5
Q ss_pred chHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEc--ChhhHHHHHHHHHhCC
Q 002267 198 NGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHV--NPDTGLTIFSVAKSLG 264 (945)
Q Consensus 198 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~--~~~~~~~~~~~a~~~g 264 (945)
.....+...+++.|..|... . +. ...+..+....+|+|++.. ...+...++++.++..
T Consensus 15 ~~~~~l~~~L~~~g~~v~~~---~---~~---~~al~~~~~~~~dlvl~D~~lp~~~g~~~~~~lr~~~ 74 (136)
T 3t6k_A 15 TVAEMLELVLRGAGYEVRRA---A---SG---EEALQQIYKNLPDALICDVLLPGIDGYTLCKRVRQHP 74 (136)
T ss_dssp HHHHHHHHHHHHTTCEEEEE---S---SH---HHHHHHHHHSCCSEEEEESCCSSSCHHHHHHHHHHSG
T ss_pred HHHHHHHHHHHHCCCEEEEe---C---CH---HHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHcCC
Confidence 35667777888888876421 1 22 3445555667899999974 4556788888887743
No 409
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=25.03 E-value=2.7e+02 Score=27.38 Aligned_cols=114 Identities=14% Similarity=0.134 Sum_probs=63.0
Q ss_pred EEEEEeccC-CccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc---CcEEEEccCChhH
Q 002267 52 RIGALFTYD-SVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMEN---EVVAAIGPQSSGI 127 (945)
Q Consensus 52 ~IG~l~~l~-~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~---~v~aiiGp~~s~~ 127 (945)
+||++.... ......-..|++-|+++. |.++. +.....+...+.+.+.+++++ ++.||+.. +...
T Consensus 120 ~i~~i~~~~~~~~~~~R~~gf~~~l~~~--------g~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~ai~~~-~d~~ 188 (277)
T 3cs3_A 120 KVLLLSGPEKGYDSQERLAVSTRELTRF--------GIPYE--IIQGDFTEPSGYAAAKKILSQPQTEPVDVFAF-NDEM 188 (277)
T ss_dssp CEEEEECCTTSHHHHHHHHHHHHHHHHT--------TCCEE--EEECCSSHHHHHHHHHHHTTSCCCSSEEEEES-SHHH
T ss_pred eEEEEeCCccCccHHHHHHHHHHHHHHc--------CCCee--EEeCCCChhHHHHHHHHHHhcCCCCCcEEEEc-ChHH
Confidence 567765442 222344567777777763 22333 334445677777788888865 68899974 4555
Q ss_pred HHHHHHhhcccC--cc----EEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHH
Q 002267 128 AHVISHVVNELN--VP----LLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLV 178 (945)
Q Consensus 128 ~~~va~~~~~~~--iP----~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l 178 (945)
+..+...+.+.+ +| ++++.... ......|-+-....+...++...++++
T Consensus 189 a~g~~~al~~~g~~vP~di~vvg~d~~~--~~~~~~p~lttv~~~~~~~g~~a~~~l 243 (277)
T 3cs3_A 189 AIGVYKYVAETNYQMGKDIRIIGFDNSE--LGAFVQPRLATIAYSKHRWGMVAAEKI 243 (277)
T ss_dssp HHHHHHHHTTSSCCBTTTEEEECSSCCH--HHHHSSSCCBEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCcEEEEEeCCcH--HHhccCCceeEEecCHHHHHHHHHHHH
Confidence 666666666554 34 55543322 111112334334455556666666644
No 410
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=24.26 E-value=77 Score=29.18 Aligned_cols=63 Identities=16% Similarity=0.070 Sum_probs=41.8
Q ss_pred eEEEEEEEeCCc--cc---chHHHHHHHHhhc-----CcEEEEeecCCCCCChHHHHHHHHhhcc-CCceEEEEEc
Q 002267 184 REVIAIFVDDDY--GR---NGISVLGDALSKK-----RAKISYKAPFSPGASRSAINSLLVGANL-MESRVFVVHV 248 (945)
Q Consensus 184 ~~v~ii~~d~~~--g~---~~~~~l~~~l~~~-----g~~v~~~~~~~~~~~~~d~~~~l~~l~~-~~~~vivl~~ 248 (945)
-+|++|...|+- |+ .....+.+.+++. |.++.....++ .+.+.+...+++..+ .++|+||..+
T Consensus 6 ~rv~IistGde~~~G~~~d~n~~~l~~~l~~~~~~~~G~~v~~~~iv~--Dd~~~i~~~l~~~~~~~~~DlVittG 79 (167)
T 1uuy_A 6 YKVAILTVSDTVSAGAGPDRSGPRAVSVVDSSSEKLGGAKVVATAVVP--DEVERIKDILQKWSDVDEMDLILTLG 79 (167)
T ss_dssp EEEEEEEECHHHHTTSSCCSHHHHHHHHHHHTTTTTTSEEEEEEEEEC--SCHHHHHHHHHHHHHTSCCSEEEEES
T ss_pred cEEEEEEECCcccCCCCccCcHHHHHHHHHhccccCCCcEEeEEEEcC--CCHHHHHHHHHHHHhcCCCCEEEECC
Confidence 467777754331 11 1234566677766 89888776776 466778888888754 4789999875
No 411
>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}
Probab=23.89 E-value=6e+02 Score=26.05 Aligned_cols=132 Identities=15% Similarity=0.142 Sum_probs=73.0
Q ss_pred EEEEEEeccCCccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhcCcEEEE--ccCChhHH
Q 002267 51 VRIGALFTYDSVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMENEVVAAI--GPQSSGIA 128 (945)
Q Consensus 51 i~IG~l~~l~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~~v~aii--Gp~~s~~~ 128 (945)
-.|+.+|...+. ..+.+++.|+.++ +|..+.+...++.-.-...+..+.+.++.=+.+|+ .+. .+
T Consensus 49 k~la~lF~e~ST---RTR~SFE~A~~~L-------Gg~~i~l~~~~ss~~kgEsl~DTarvLs~~~D~iviR~~~-~~-- 115 (323)
T 3gd5_A 49 KVLGLVFLKAST---RTRVSFTVAMYQL-------GGQVIDLSPSNTQVGRGEPVRDTARVLGRYVDGLAIRTFA-QT-- 115 (323)
T ss_dssp CEEEEEESSCCH---HHHHHHHHHHHHT-------TCEEEEC----------CCHHHHHHHHTTTCSEEEEECSS-HH--
T ss_pred CEEEEEecCCCc---chHhhHHHHHHHc-------CCeEEEeCcccccCCCCCCHHHHHHHHHHhCCEEEEecCC-hh--
Confidence 368888877653 5788999999997 34555554444332212223333344454344443 432 22
Q ss_pred HHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHH---HHcC---CeEEEEEEEeCCcccchHHH
Q 002267 129 HVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLV---EYYG---WREVIAIFVDDDYGRNGISV 202 (945)
Q Consensus 129 ~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l---~~~~---w~~v~ii~~d~~~g~~~~~~ 202 (945)
.+..+++..+||+|.-+ + +...| .+++++++ +++| ..+|++|. |. ...+..
T Consensus 116 -~~~~lA~~~~vPVINag--~----~~~HP------------tQaLaDl~Ti~e~~g~l~glkva~vG--D~--~rva~S 172 (323)
T 3gd5_A 116 -ELEEYAHYAGIPVINAL--T----DHEHP------------CQVVADLLTIRENFGRLAGLKLAYVG--DG--NNVAHS 172 (323)
T ss_dssp -HHHHHHHHHCSCEEEEE--C----SSCCH------------HHHHHHHHHHHHHHSCCTTCEEEEES--CC--CHHHHH
T ss_pred -HHHHHHHhCCCCEEeCC--C----CCCCc------------HHHHHHHHHHHHHhCCCCCCEEEEEC--CC--CcHHHH
Confidence 33455666789999732 2 11112 35666654 5554 46777764 22 456777
Q ss_pred HHHHHhhcCcEEEEee
Q 002267 203 LGDALSKKRAKISYKA 218 (945)
Q Consensus 203 l~~~l~~~g~~v~~~~ 218 (945)
+..++...|.++....
T Consensus 173 l~~~~~~~G~~v~~~~ 188 (323)
T 3gd5_A 173 LLLGCAKVGMSIAVAT 188 (323)
T ss_dssp HHHHHHHHTCEEEEEC
T ss_pred HHHHHHHcCCEEEEEC
Confidence 7788888898876543
No 412
>2xwv_A Sialic acid-binding periplasmic protein SIAP; transport protein, trap, sugar transport; HET: SLB; 1.05A {Haemophilus influenzae} PDB: 2xxk_A* 2xa5_A* 2wyp_A* 2wx9_A* 2xwo_A* 2xwk_A* 2v4c_A* 2wyk_A* 2xwi_A* 3b50_A* 2cey_A 2cex_A
Probab=23.82 E-value=1.4e+02 Score=30.76 Aligned_cols=60 Identities=15% Similarity=0.181 Sum_probs=43.7
Q ss_pred CCCCChHHhhcCCCCeEEeeCchHHHHHHHhhccccccceecCCHHHHHHHHhcCCCCCceeEEecchhhH
Q 002267 700 SQIEGIDSLISSTEPIGVQDGSFAWNYLVDELKIAESRLVKLKNMEEYSIALARGPKGGGVAAIVDELPYI 770 (945)
Q Consensus 700 ~~i~~~~dL~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~a~~~~~~~~ 770 (945)
.+|++++||. |++|.+.........++ .++.. .++. ...|...+|++ |.+|+.....+.+
T Consensus 133 ~pI~s~~Dlk--GlKiRv~~~~~~~~~~~-alGa~---pv~m-~~~Evy~ALq~----G~vDg~~~~~~~~ 192 (312)
T 2xwv_A 133 RAINSIADMK--GLKLRVPNAATNLAYAK-YVGAS---PTPM-AFSEVYLALQT----NAVDGQENPLAAV 192 (312)
T ss_dssp SCCCSGGGGT--TCEEEECSCHHHHHHHH-HHTCE---EEEC-CGGGHHHHHHT----TSSSEEEEEHHHH
T ss_pred CCcCCHHHhC--CCEEEeCCCHHHHHHHH-HcCCe---eeec-CHHHHHHHHHc----CCcceEeccHHHH
Confidence 5899999997 99998875443344553 45533 2333 56789999999 8999998877766
No 413
>3lfj_A Manxb, phosphotransferase system, mannose/fructose/N- acetylgalactosamine-specific component...; manxb PTS; 1.56A {Thermoanaerobacter tengcongensis}
Probab=23.38 E-value=1.3e+02 Score=28.36 Aligned_cols=82 Identities=12% Similarity=0.052 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHcCCeEEEEEEEeCCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcC
Q 002267 170 QMHAVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN 249 (945)
Q Consensus 170 ~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~ 249 (945)
.++.+..+.+.++.++|.++ +|..........+.+.+.-.|+++... +.++....+.+-+..+-++++++-+
T Consensus 35 HGQVat~W~k~~~~~~IiVv-nD~vA~D~~~k~~lkmA~P~gvk~~i~-------sve~ai~~~~~~~~~~~~v~il~k~ 106 (187)
T 3lfj_A 35 HGQVMTRWMKGFPEASIVII-DDELAVDEFMKNIYTMAAPPGVKVKVF-------GVDAALKEWSQKTSVEEKVFLLFKN 106 (187)
T ss_dssp CTTHHHHHHTTCTTCEEEEE-CHHHHHCHHHHHHHHHTSCTTCCEEEE-------CHHHHHHHHHSBCSSCEEEEEEESS
T ss_pred hhhhhheeccccCCCEEEEE-CccccCCHHHHHHHHHhccCCCeEEEE-------EHHHHHHHHhCCccCCceEEEEECC
Confidence 46777889999999999665 444444445555555555557776532 3455555566554456789999999
Q ss_pred hhhHHHHHHH
Q 002267 250 PDTGLTIFSV 259 (945)
Q Consensus 250 ~~~~~~~~~~ 259 (945)
+.++.++++.
T Consensus 107 p~d~~~lve~ 116 (187)
T 3lfj_A 107 IDTCKRVMDG 116 (187)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHc
Confidence 9999888654
No 414
>4ecf_A ABC-type phosphate transport system, periplasmic; ABC transporter, phosphate transport receptor; HET: MSE; 1.55A {Lactobacillus brevis}
Probab=22.99 E-value=70 Score=32.07 Aligned_cols=72 Identities=7% Similarity=-0.122 Sum_probs=48.7
Q ss_pred eeHHHHHHHHHhC-CCCccEEEEEcCCCCCCCCHHHHHHHHHcCcccEEEecEEEecC---cceeEEecccccccceEEE
Q 002267 513 YCIDVFEAAVNLL-PYPVPHNYIMYGNGKRNPIYNDIVQQVALNKFDAAVGDITIVTN---RTKLVDFTQPYMESGLVVV 588 (945)
Q Consensus 513 ~~~dll~~l~~~l-~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~D~~~~~~~~t~~---r~~~~dfs~p~~~~~~~~v 588 (945)
+..++++.+.++. +.+ +.+.. ++-...+++|.+|++|+++.+.....+ ....+ ...|+..+.++++
T Consensus 17 ~l~~~~~~f~~~~P~v~--i~v~~-------~~S~~~~~~l~~g~~Dig~~~~~~~~~e~~~~~~l-~~~~i~~d~lvvv 86 (264)
T 4ecf_A 17 LVEAAGEQYTGEHLGTF--INVQG-------GGTGTGLSQIQEGAVQIGNSDLFAGEQKGINARQL-VDHRVAVVGITPI 86 (264)
T ss_dssp HHHHHHHHHHHHSTTEE--EEEEE-------ECHHHHHHHHHHTSSSEEEESSCGGGSTTCCGGGE-ECCEEEEEEEEEE
T ss_pred HHHHHHHHHHHHCCCce--EEEEe-------CCCHHHHHHHHcCCCchhhccCCCChhHHhhccCC-EEEEEEEEEEEEE
Confidence 4456778887776 434 44433 456888999999999998865433321 01122 3688999999999
Q ss_pred EEccCC
Q 002267 589 APVQKL 594 (945)
Q Consensus 589 v~~~~~ 594 (945)
++...+
T Consensus 87 v~~~~p 92 (264)
T 4ecf_A 87 VNKKVG 92 (264)
T ss_dssp ECTTSS
T ss_pred EcCCCc
Confidence 987653
No 415
>1ble_A Fructose permease; phosphotransferase, sugar transport; 2.90A {Bacillus subtilis} SCOP: c.38.1.1
Probab=22.94 E-value=1.2e+02 Score=27.74 Aligned_cols=80 Identities=13% Similarity=0.094 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHcCCeEEEEEEEeCCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcC
Q 002267 170 QMHAVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN 249 (945)
Q Consensus 170 ~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~ 249 (945)
+++.+..+.++++.+++.++ +|..........+.+...-.|+++... +.++....+.+-+..+-++++++-+
T Consensus 15 HGQV~t~W~~~~~~~~IiVv-nD~vA~D~~~k~~lk~a~P~gvk~~i~-------sve~ai~~~~~~~~~~~~v~ll~k~ 86 (163)
T 1ble_A 15 HGQILTRWIKVHAADRIIVV-SDDIAQDEMRKTLILSVAPSNVKASAV-------SVSKMAKAFHSPRYEGVTAMLLFEN 86 (163)
T ss_dssp CTTHHHHHHHHHTCSEEEEE-CHHHHHCHHHHHHHHTSSCTTSEEEEE-------CHHHHHHHHHCSTTTTCEEEEEESS
T ss_pred chhheeeeccccCCCEEEEe-CccccCCHHHHHHHHhhCCCCCeEEEE-------EHHHHHHHHhcccCCCceEEEEECC
Confidence 45667788999999999665 344433445555555554557776532 4455666666655567889999999
Q ss_pred hhhHHHHH
Q 002267 250 PDTGLTIF 257 (945)
Q Consensus 250 ~~~~~~~~ 257 (945)
+.++.+++
T Consensus 87 p~d~~~lv 94 (163)
T 1ble_A 87 PSDIVSLI 94 (163)
T ss_dssp SHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998775
No 416
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=22.69 E-value=2.6e+02 Score=24.38 Aligned_cols=66 Identities=11% Similarity=-0.018 Sum_probs=41.7
Q ss_pred EEEEeCCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEE--cChhhHHHHHHHHHhCC
Q 002267 188 AIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVH--VNPDTGLTIFSVAKSLG 264 (945)
Q Consensus 188 ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~--~~~~~~~~~~~~a~~~g 264 (945)
+|.+|+. .....+...|++.|..++... .+ -...+..++...+|+|++. +..-++..++++.++..
T Consensus 16 LiVDD~~---~~r~~l~~~L~~~G~~~v~~a-----~~---g~~al~~~~~~~~DlillD~~MP~mdG~el~~~ir~~~ 83 (134)
T 3to5_A 16 LIVDDFS---TMRRIVKNLLRDLGFNNTQEA-----DD---GLTALPMLKKGDFDFVVTDWNMPGMQGIDLLKNIRADE 83 (134)
T ss_dssp EEECSCH---HHHHHHHHHHHHTTCCCEEEE-----SS---HHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHST
T ss_pred EEEeCCH---HHHHHHHHHHHHcCCcEEEEE-----CC---HHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhCC
Confidence 4444443 455667778888887533211 12 2334555666789999986 55667888888888654
No 417
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=22.69 E-value=35 Score=34.26 Aligned_cols=75 Identities=8% Similarity=-0.072 Sum_probs=38.6
Q ss_pred EEEEEEe--CCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcChhhHHHHHHHHHhC
Q 002267 186 VIAIFVD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVNPDTGLTIFSVAKSL 263 (945)
Q Consensus 186 v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~~~~~~~~~~~a~~~ 263 (945)
|+++..+ ++|.......+.+++++.|.++..... . .+.......++.+...++|.||+....... ..++.+.+.
T Consensus 2 Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~--~~~~~~~~~~~~l~~~~vdgiI~~~~~~~~-~~~~~~~~~ 77 (276)
T 2h0a_A 2 VSVLLPFVATEFYRRLVEGIEGVLLEQRYDLALFPI-L--SLARLKRYLENTTLAYLTDGLILASYDLTE-RFEEGRLPT 77 (276)
T ss_dssp EEEEECCSCCHHHHHHHHHHHHHHGGGTCEEEECCC-C--SCCCCC---------CCCSEEEEESCCCC-------CCSC
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHCCCEEEEEeC-C--CchhhHHHHHHHHHhCCCCEEEEecCCCCH-HHHHHHhhc
Confidence 5677653 667778889999999999988765321 1 122222445667777789999887543322 344444443
Q ss_pred C
Q 002267 264 G 264 (945)
Q Consensus 264 g 264 (945)
|
T Consensus 78 ~ 78 (276)
T 2h0a_A 78 E 78 (276)
T ss_dssp S
T ss_pred C
Confidence 4
No 418
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=22.59 E-value=4.1e+02 Score=26.42 Aligned_cols=99 Identities=11% Similarity=0.125 Sum_probs=57.9
Q ss_pred HHHHHHHH-HcCC-eEEEEEEEeCCcccchHHHHHHH--------Hhhc-CcEEEEeecCCCCCChHHHHHHHHhhccCC
Q 002267 172 HAVADLVE-YYGW-REVIAIFVDDDYGRNGISVLGDA--------LSKK-RAKISYKAPFSPGASRSAINSLLVGANLME 240 (945)
Q Consensus 172 ~ai~~~l~-~~~w-~~v~ii~~d~~~g~~~~~~l~~~--------l~~~-g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~ 240 (945)
+.+..+++ +.+- .+|.+-....+.-.-+...+... |+.+ |.+|.+--. ..+. ..++..+++.+
T Consensus 107 ~~~~~~l~~~~~~~~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~---~vp~---e~iv~aa~e~~ 180 (262)
T 1xrs_B 107 EETDEYIKENIGRKIVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGS---QVAN---EDFIKKAVELE 180 (262)
T ss_dssp HHHHHHHHHHTCSCEEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCS---SBCH---HHHHHHHHHTT
T ss_pred HHHHHHHHhhcCCCCEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCC---CCCH---HHHHHHHHHcC
Confidence 33444443 3333 34433334455555556666666 8899 999876322 1233 44566666788
Q ss_pred ceEEEEEcCh-------hhHHHHHHHHHhCCCCCCCeEEEEeC
Q 002267 241 SRVFVVHVNP-------DTGLTIFSVAKSLGMTAGSYVWIATD 276 (945)
Q Consensus 241 ~~vivl~~~~-------~~~~~~~~~a~~~g~~~~~~~wi~~~ 276 (945)
+|+|.+.+.. .....+++++++.|+...-.+|++..
T Consensus 181 ~d~VglS~l~t~~~~~~~~~~~~i~~L~~~g~~~~i~vivGG~ 223 (262)
T 1xrs_B 181 ADVLLVSQTVTQKNVHIQNMTHLIELLEAEGLRDRFVLLCGGP 223 (262)
T ss_dssp CSEEEEECCCCTTSHHHHHHHHHHHHHHHTTCGGGSEEEEECT
T ss_pred CCEEEEEeecCCccchHHHHHHHHHHHHhcCCCCCCEEEEECC
Confidence 9999998633 34566778888888654334555543
No 419
>1xah_A Sadhqs, 3-dehydroquinate synthase; shikimate pathway, aromatic amino acid biosynthesis, open form, form B, domain movement, cyclase; HET: NAD; 2.20A {Staphylococcus aureus} PDB: 1xag_A* 1xai_A* 1xaj_A* 1xal_A*
Probab=22.32 E-value=88 Score=32.97 Aligned_cols=110 Identities=5% Similarity=-0.051 Sum_probs=58.4
Q ss_pred CceEEecCChhHHHHHHHHHHHHcCCeEEEEEEEeCCcccchHHHHHHHHhhcC-cEEEEeecCCCCCChHHHHHHHHhh
Q 002267 158 PYFLRTTQSDYYQMHAVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKR-AKISYKAPFSPGASRSAINSLLVGA 236 (945)
Q Consensus 158 p~~~r~~p~d~~~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g-~~v~~~~~~~~~~~~~d~~~~l~~l 236 (945)
||-+...+.... .+.++++.+ +++.+|++...+.. ..+.+.+.| +.| +.+.......+..+.+.+...++.+
T Consensus 11 ~~~i~~G~g~l~---~l~~~l~~~--~~~liVtd~~~~~~-~~~~v~~~L-~~g~~~~~~~~~~e~~p~~~~v~~~~~~~ 83 (354)
T 1xah_A 11 NYPIYVEHGAIK---YIGTYLNQF--DQSFLLIDEYVNQY-FANKFDDIL-SYENVHKVIIPAGEKTKTFEQYQETLEYI 83 (354)
T ss_dssp CCEEEEETTGGG---HHHHHHTTC--SCEEEEEEHHHHHH-HHHHHC-------CEEEEEECSGGGGCSHHHHHHHHHHH
T ss_pred CccEEEcCChHH---HHHHHHHhc--CeEEEEECCcHHHH-HHHHHHHHH-hcCCeEEEEECCCCCCCCHHHHHHHHHHH
Confidence 444444444332 234455555 78888876544333 567777777 677 3322111222224667788888888
Q ss_pred ccCCc---eEEEEEcC--hhhHHHHHHHHHhCCCCCCCeEEEEeCC
Q 002267 237 NLMES---RVFVVHVN--PDTGLTIFSVAKSLGMTAGSYVWIATDW 277 (945)
Q Consensus 237 ~~~~~---~vivl~~~--~~~~~~~~~~a~~~g~~~~~~~wi~~~~ 277 (945)
++.++ |+||-.+. .-++..++......| -.++-|-|..
T Consensus 84 ~~~~~~r~d~iIavGGGsv~D~ak~vA~~~~rg---ip~i~IPTT~ 126 (354)
T 1xah_A 84 LSHHVTRNTAIIAVGGGATGDFAGFVAATLLRG---VHFIQVPTTI 126 (354)
T ss_dssp HTTCCCTTCEEEEEESHHHHHHHHHHHHHBTTC---CEEEEEECST
T ss_pred HHcCCCCCceEEEECChHHHHHHHHHHHHhccC---CCEEEECCcc
Confidence 88887 88886654 446666666554434 2345555543
No 420
>1kq3_A Glycerol dehydrogenase; structural genomics, joint center FO structural genomics, JCSG, protein structure initiative, PS oxidoreductase; 1.50A {Thermotoga maritima} SCOP: e.22.1.2
Probab=22.26 E-value=31 Score=36.98 Aligned_cols=93 Identities=15% Similarity=0.031 Sum_probs=56.2
Q ss_pred HHHHHHHcCCeEEEEEEEeCCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcC--hh
Q 002267 174 VADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN--PD 251 (945)
Q Consensus 174 i~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~--~~ 251 (945)
+.++++.+| +++.+|++...+.....+.+.+.|++.|+.+. .+....+.+.+....+.+++ ++|+||-.+. .-
T Consensus 33 l~~~l~~~g-~~~liVtd~~~~~~~~~~~v~~~L~~~g~~~~---~~~ge~~~~~v~~~~~~~~~-~~d~IIavGGGsv~ 107 (376)
T 1kq3_A 33 LEEELSRFG-ERAFVVIDDFVDKNVLGENFFSSFTKVRVNKQ---IFGGECSDEEIERLSGLVEE-ETDVVVGIGGGKTL 107 (376)
T ss_dssp HHHHHHTTC-SEEEEEECHHHHHHTTCTTGGGGCSSSEEEEE---ECCSSCBHHHHHHHHTTCCT-TCCEEEEEESHHHH
T ss_pred HHHHHHHcC-CeEEEEECccHHhhccHHHHHHHHHHcCCeEE---EeCCCCCHHHHHHHHHHHhc-CCCEEEEeCCcHHH
Confidence 556677788 99988886543322225556666767774332 22323455677888888887 9999997654 44
Q ss_pred hHHHHHHHHHhCCCCCCCeEEEEeC
Q 002267 252 TGLTIFSVAKSLGMTAGSYVWIATD 276 (945)
Q Consensus 252 ~~~~~~~~a~~~g~~~~~~~wi~~~ 276 (945)
++.+++.. ..| -.++-|-|.
T Consensus 108 D~aK~iA~--~~~---~p~i~IPTT 127 (376)
T 1kq3_A 108 DTAKAVAY--KLK---KPVVIVPTI 127 (376)
T ss_dssp HHHHHHHH--HTT---CCEEEEESS
T ss_pred HHHHHHHH--hcC---CCEEEecCc
Confidence 56666542 223 234555554
No 421
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=22.26 E-value=1.4e+02 Score=25.70 Aligned_cols=57 Identities=12% Similarity=0.060 Sum_probs=38.5
Q ss_pred chHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEc--ChhhHHHHHHHHHhC
Q 002267 198 NGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHV--NPDTGLTIFSVAKSL 263 (945)
Q Consensus 198 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~--~~~~~~~~~~~a~~~ 263 (945)
.....+...+++.|..+... . + ....+..++...+|+|++.. ...++..++++.++.
T Consensus 17 ~~~~~l~~~l~~~g~~v~~~---~---~---~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~ 75 (140)
T 3grc_A 17 DIARLLNLMLEKGGFDSDMV---H---S---AAQALEQVARRPYAAMTVDLNLPDQDGVSLIRALRRD 75 (140)
T ss_dssp HHHHHHHHHHHHTTCEEEEE---C---S---HHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHCCCeEEEE---C---C---HHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhC
Confidence 45677778888888876422 1 2 23455566667899999964 455678888888863
No 422
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=22.25 E-value=1.2e+02 Score=30.50 Aligned_cols=64 Identities=6% Similarity=0.052 Sum_probs=45.8
Q ss_pred CeEEEEEEEe-CCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcC
Q 002267 183 WREVIAIFVD-DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN 249 (945)
Q Consensus 183 w~~v~ii~~d-~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~ 249 (945)
-++|+++..+ ++|.......+.+++++.|.++..... . .+.......++.+...++|.||+...
T Consensus 8 ~~~Igvi~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~--~~~~~~~~~~~~l~~~~vdgiI~~~~ 72 (288)
T 2qu7_A 8 SNIIAFIVPDQNPFFTEVLTEISHECQKHHLHVAVASS-E--ENEDKQQDLIETFVSQNVSAIILVPV 72 (288)
T ss_dssp EEEEEEEESSCCHHHHHHHHHHHHHHGGGTCEEEEEEC-T--TCHHHHHHHHHHHHHTTEEEEEECCS
T ss_pred CCEEEEEECCCCchHHHHHHHHHHHHHHCCCEEEEEeC-C--CCHHHHHHHHHHHHHcCccEEEEecC
Confidence 3578888764 566777888999999999998765422 1 23444456777777788999988753
No 423
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=22.23 E-value=1.9e+02 Score=30.04 Aligned_cols=81 Identities=11% Similarity=0.078 Sum_probs=54.5
Q ss_pred CCeEEEEEEEeC----CcccchHHHHHHHHhhcC-------cEEEEeecCCCCCChHHHHHHHHhhcc-CCceEEEEEcC
Q 002267 182 GWREVIAIFVDD----DYGRNGISVLGDALSKKR-------AKISYKAPFSPGASRSAINSLLVGANL-MESRVFVVHVN 249 (945)
Q Consensus 182 ~w~~v~ii~~d~----~~g~~~~~~l~~~l~~~g-------~~v~~~~~~~~~~~~~d~~~~l~~l~~-~~~~vivl~~~ 249 (945)
.--+|+++.+.. .+|......++.++++.| +++..... ..+...-...++++.. .+.++||....
T Consensus 15 ~~i~IG~~~p~sg~~~~~~~~~~~g~~~a~~~~ng~~~g~~~~l~~~d~---~~~~~~~~~~~~~l~~~~~v~~iig~~~ 91 (375)
T 4evq_A 15 GALKVGLLLPYSGTYAPLGEAITRGLELYVQSQGGKLGGRSISFVKVDD---ESAPPKATELTTKLIQSEKADVLIGTVH 91 (375)
T ss_dssp CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHTTTEETTEEEEEEEEEC---TTCHHHHHHHHHCCCCCSCCSEEEECSS
T ss_pred CCeEEEEEeCCCCcchhcCHHHHHHHHHHHHHhCCCcCCEEEEEEEecC---CCCHHHHHHHHHHHHhcCCceEEEcCCc
Confidence 456888988653 467777888888888887 44433221 1244455667777776 48888888776
Q ss_pred hhhHHHHHHHHHhCCC
Q 002267 250 PDTGLTIFSVAKSLGM 265 (945)
Q Consensus 250 ~~~~~~~~~~a~~~g~ 265 (945)
......+...+.+.++
T Consensus 92 s~~~~~~~~~~~~~~i 107 (375)
T 4evq_A 92 SGVAMAMVKIAREDGI 107 (375)
T ss_dssp HHHHHHHHHHHHHHCC
T ss_pred cHHHHHHHHHHHHcCc
Confidence 6666677777777665
No 424
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=22.14 E-value=1.7e+02 Score=27.14 Aligned_cols=61 Identities=11% Similarity=0.045 Sum_probs=40.7
Q ss_pred EEEEEEEeCCc--c---cchHHHHHHHHh---hcCcEEEEeecCCCCCChHHHHHHHHhhccC-CceEEEEEc
Q 002267 185 EVIAIFVDDDY--G---RNGISVLGDALS---KKRAKISYKAPFSPGASRSAINSLLVGANLM-ESRVFVVHV 248 (945)
Q Consensus 185 ~v~ii~~d~~~--g---~~~~~~l~~~l~---~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~-~~~vivl~~ 248 (945)
+|++|...|+- | ......+.+.++ +.|+++ ....++ .+.+.+...+++..+. ++|+||..+
T Consensus 7 rv~IistGdE~~~G~i~Dsn~~~l~~~l~~l~~~G~~v-~~~iv~--Dd~~~I~~~l~~~~~~~~~DlVittG 76 (178)
T 2pbq_A 7 VIGVVTISDRASKGIYEDISGKAIIDYLKDVIITPFEV-EYRVIP--DERDLIEKTLIELADEKGCSLILTTG 76 (178)
T ss_dssp EEEEEEECHHHHHTSSCCHHHHHHHHHHHHHBCSCCEE-EEEEEC--SCHHHHHHHHHHHHHTSCCSEEEEES
T ss_pred EEEEEEeCCcCCCCCeecchHHHHHHHHHHHHhCCCEE-EEEEcC--CCHHHHHHHHHHHHhcCCCCEEEECC
Confidence 67777754431 1 123456777666 899998 555555 4667788888887653 789999875
No 425
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=21.86 E-value=2e+02 Score=31.53 Aligned_cols=145 Identities=10% Similarity=-0.001 Sum_probs=87.3
Q ss_pred CChHHHHHHHHHHHhcCcEEEE--ccCCh--h-----HHHHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhH
Q 002267 99 CSGFVGTMEALQLMENEVVAAI--GPQSS--G-----IAHVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYY 169 (945)
Q Consensus 99 ~~~~~a~~~a~~li~~~v~aii--Gp~~s--~-----~~~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~ 169 (945)
-.+..+...+.++++.++.+++ -...+ . ....+...++++++.+|.+.+.--.....+.+ .-..|..
T Consensus 72 vp~~~~~~~v~e~~~~Gi~~vv~~s~G~~e~g~~g~~~~~~l~~~a~~~g~~viGPnc~Gv~~~~~~~~--~~~~~~~-- 147 (457)
T 2csu_A 72 VPKRFVKDTLIQCGEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGMRIIGPNCVGIMNTHVDLN--ATFITVA-- 147 (457)
T ss_dssp SCHHHHHHHHHHHHHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTCEEECSSCCEEEEGGGTEE--EESSCCC--
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEecCCCCccccccHHHHHHHHHHHHHcCCEEEcCCcceEEccCCCce--eeecCCC--
Confidence 3566667777788877765433 21111 1 25667788889999999765532111111111 1112221
Q ss_pred HHHHHHHHHHHcCCeEEEEEEEeCCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhc-cCCceEEEEEc
Q 002267 170 QMHAVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGAN-LMESRVFVVHV 248 (945)
Q Consensus 170 ~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~-~~~~~vivl~~ 248 (945)
.. -+|++|..... ....+.+.+.++|+-+.....+--. .+.++.+.|+.+. +.++++|+++.
T Consensus 148 ----------~~--G~v~~vsqSG~----~~~~~~~~~~~~g~G~s~~vs~G~~-~~~~~~d~l~~~~~D~~t~~I~l~~ 210 (457)
T 2csu_A 148 ----------KK--GNVAFISQSGA----LGAGIVYKTIKEDIGFSKFISVGNM-ADVDFAELMEYLADTEEDKAIALYI 210 (457)
T ss_dssp ----------EE--CSEEEEESCHH----HHHHHHHHHHHTTCEESEEEECTTC-CSSCHHHHHHHHTTCSSCCEEEEEE
T ss_pred ----------CC--CCEEEEeCCHH----HHHHHHHHHHhcCCCeeEEEECCCc-CCCCHHHHHHHHhcCCCCCEEEEEE
Confidence 11 46888875432 4456667778888777665555422 2455677777775 45799999999
Q ss_pred Ch-hhHHHHHHHHHhCC
Q 002267 249 NP-DTGLTIFSVAKSLG 264 (945)
Q Consensus 249 ~~-~~~~~~~~~a~~~g 264 (945)
.. .+...+++.++...
T Consensus 211 E~i~~~~~f~~~a~~~~ 227 (457)
T 2csu_A 211 EGVRNGKKFMEVAKRVT 227 (457)
T ss_dssp SCCSCHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHhc
Confidence 87 67888888887753
No 426
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=21.75 E-value=1.2e+02 Score=31.10 Aligned_cols=65 Identities=6% Similarity=-0.014 Sum_probs=45.2
Q ss_pred cCCeEEEEEEEe--CCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcC
Q 002267 181 YGWREVIAIFVD--DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN 249 (945)
Q Consensus 181 ~~w~~v~ii~~d--~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~ 249 (945)
-.-+.|+++..+ ++|.....+.+.+++++.|..+..... . .+.......++.+...++|.|| ...
T Consensus 58 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~-~--~~~~~~~~~~~~l~~~~vdgiI-~~~ 124 (330)
T 3ctp_A 58 KNSKTIGLMVPNISNPFFNQMASVIEEYAKNKGYTLFLCNT-D--DDKEKEKTYLEVLQSHRVAGII-ASR 124 (330)
T ss_dssp --CCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEEC-T--TCHHHHHHHHHHHHHTTCSEEE-EET
T ss_pred CCCCEEEEEeCCCCCcHHHHHHHHHHHHHHHCCCEEEEEeC-C--CChHHHHHHHHHHHhCCCCEEE-ECC
Confidence 344679998864 567777889999999999998765422 1 2344455677777778899888 643
No 427
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=21.62 E-value=2.4e+02 Score=28.24 Aligned_cols=88 Identities=14% Similarity=0.101 Sum_probs=58.7
Q ss_pred HHHHHHHHHHcCCeEEEEEEEeCCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEE---
Q 002267 171 MHAVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVH--- 247 (945)
Q Consensus 171 ~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~--- 247 (945)
...++.....-|-..+.++. |+.|..+..+.++..-+..++.|.....+ .+.. ++...+..++|.|++.
T Consensus 74 p~~~A~~y~~~GA~~isvlt-d~~~f~Gs~~~l~~ir~~v~lPvl~kdfi---id~~----qv~~A~~~GAD~VlLi~a~ 145 (272)
T 3qja_A 74 PAKLAQAYQDGGARIVSVVT-EQRRFQGSLDDLDAVRASVSIPVLRKDFV---VQPY----QIHEARAHGADMLLLIVAA 145 (272)
T ss_dssp HHHHHHHHHHTTCSEEEEEC-CGGGHHHHHHHHHHHHHHCSSCEEEESCC---CSHH----HHHHHHHTTCSEEEEEGGG
T ss_pred HHHHHHHHHHcCCCEEEEec-ChhhcCCCHHHHHHHHHhCCCCEEECccc---cCHH----HHHHHHHcCCCEEEEeccc
Confidence 34566667778889888775 45555555666665555567777654322 2222 3555667899999985
Q ss_pred cChhhHHHHHHHHHhCCCC
Q 002267 248 VNPDTGLTIFSVAKSLGMT 266 (945)
Q Consensus 248 ~~~~~~~~~~~~a~~~g~~ 266 (945)
........++..+++.||.
T Consensus 146 l~~~~l~~l~~~a~~lGl~ 164 (272)
T 3qja_A 146 LEQSVLVSMLDRTESLGMT 164 (272)
T ss_dssp SCHHHHHHHHHHHHHTTCE
T ss_pred CCHHHHHHHHHHHHHCCCc
Confidence 3566788889999998874
No 428
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=21.57 E-value=85 Score=27.83 Aligned_cols=34 Identities=26% Similarity=0.495 Sum_probs=27.7
Q ss_pred CceEEEEEcChhhHHHHHHHHHhCCCCCCCeEEEEeC
Q 002267 240 ESRVFVVHVNPDTGLTIFSVAKSLGMTAGSYVWIATD 276 (945)
Q Consensus 240 ~~~vivl~~~~~~~~~~~~~a~~~g~~~~~~~wi~~~ 276 (945)
.+|+++++..++....++.++.+.|. +.+|+.+.
T Consensus 69 ~vDlvii~vp~~~v~~v~~~~~~~g~---~~i~~~~~ 102 (138)
T 1y81_A 69 DVDVIVFVVPPKVGLQVAKEAVEAGF---KKLWFQPG 102 (138)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHTTC---CEEEECTT
T ss_pred CCCEEEEEeCHHHHHHHHHHHHHcCC---CEEEEcCc
Confidence 68999999999999999998888775 34787653
No 429
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=21.22 E-value=1.8e+02 Score=29.32 Aligned_cols=65 Identities=8% Similarity=-0.014 Sum_probs=45.4
Q ss_pred eEEEEEE-EeCCcccchHHHHHHHHhhcCc---EEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcC
Q 002267 184 REVIAIF-VDDDYGRNGISVLGDALSKKRA---KISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN 249 (945)
Q Consensus 184 ~~v~ii~-~d~~~g~~~~~~l~~~l~~~g~---~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~ 249 (945)
++|+++. .+++|-....+.+++.+++.|. .+..... ....+.+.....++++.+.++|.||+.+.
T Consensus 3 ~~Igvi~~~~~p~~~~i~~gi~~~l~~~gy~g~~v~l~~~-~~~~~~~~~~~~~~~l~~~~vDgII~~~~ 71 (295)
T 3lft_A 3 AKIGVLQFVSHPSLDLIYKGIQDGLAEEGYKDDQVKIDFM-NSEGDQSKVATMSKQLVANGNDLVVGIAT 71 (295)
T ss_dssp EEEEEEECSCCHHHHHHHHHHHHHHHHTTCCGGGEEEEEE-ECTTCHHHHHHHHHHHTTSSCSEEEEESH
T ss_pred eEEEEEEccCChhHHHHHHHHHHHHHHcCCCCCceEEEEe-cCCCCHHHHHHHHHHHHhcCCCEEEECCc
Confidence 5788872 2366777888999999999998 5432211 11134455677888998899999998753
No 430
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=21.21 E-value=1.7e+02 Score=27.76 Aligned_cols=63 Identities=11% Similarity=0.061 Sum_probs=40.7
Q ss_pred eEEEEEEEeCCcc-----cchHHHHHHHHhhcCcE--EEEeecCCCCCChHHHHHHHHhhccC-CceEEEEEc
Q 002267 184 REVIAIFVDDDYG-----RNGISVLGDALSKKRAK--ISYKAPFSPGASRSAINSLLVGANLM-ESRVFVVHV 248 (945)
Q Consensus 184 ~~v~ii~~d~~~g-----~~~~~~l~~~l~~~g~~--v~~~~~~~~~~~~~d~~~~l~~l~~~-~~~vivl~~ 248 (945)
-++++|...|+-. ......+.+.+++.|.+ +.....++ .+.+.+...++++.+. ++|+||..+
T Consensus 4 ~rv~IIttGdEl~~G~i~D~n~~~L~~~L~~~G~~~~v~~~~iV~--Dd~~~I~~al~~a~~~~~~DlVitTG 74 (195)
T 1di6_A 4 LRIGLVSISDRASSGVYQDKGIPALEEWLTSALTTPFELETRLIP--DEQAIIEQTLCELVDEMSCHLVLTTG 74 (195)
T ss_dssp EEEEEEEEECC-------CCHHHHHHHHHHHHBCSCEEEEEEEEE--SCHHHHHHHHHHHHHTSCCSEEEEES
T ss_pred CEEEEEEECCCCCCCeEEchHHHHHHHHHHHcCCCCceEEEEEeC--CCHHHHHHHHHHHHhcCCCCEEEECC
Confidence 3677776544322 22346678888888876 45544555 4567788888876653 689998875
No 431
>3omb_A Extracellular solute-binding protein, family 1; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG; 2.10A {Bifidobacterium longum subsp}
Probab=20.99 E-value=75 Score=35.70 Aligned_cols=29 Identities=10% Similarity=0.129 Sum_probs=19.5
Q ss_pred HHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCc
Q 002267 205 DALSKKRAKISYKAPFSPGASRSAINSLLVGANLMES 241 (945)
Q Consensus 205 ~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~ 241 (945)
+.+++.|++ .| .+-+++...++++++.++
T Consensus 172 dll~~~Gl~------~P--~Twdel~~~~~~~k~~~p 200 (535)
T 3omb_A 172 AWLDKLGLQ------VP--TTWDELENVLKAFKTQDP 200 (535)
T ss_dssp HHHHHHTCC------CC--CBHHHHHHHHHHHHHSCT
T ss_pred HHHHHcCCC------CC--CCHHHHHHHHHHHHhhCC
Confidence 455667764 23 467788888888876644
No 432
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=20.95 E-value=4.3e+02 Score=26.03 Aligned_cols=83 Identities=7% Similarity=-0.018 Sum_probs=50.9
Q ss_pred eEEEEEEEeCCcccchHHHHHHHHhhcCcEEEEee-cCCCCCChHHHHHHHHhhccCCceEEEEEcC----hhhHHHHHH
Q 002267 184 REVIAIFVDDDYGRNGISVLGDALSKKRAKISYKA-PFSPGASRSAINSLLVGANLMESRVFVVHVN----PDTGLTIFS 258 (945)
Q Consensus 184 ~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~-~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~----~~~~~~~~~ 258 (945)
.+|.+.....+.-.-+..-+...|+.+|.+|.+-- ..| ..+ ++..++..++++|.+.+. ......+++
T Consensus 124 ~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp----~e~---l~~~~~~~~~d~V~lS~l~~~~~~~~~~~i~ 196 (258)
T 2i2x_B 124 GTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVP----AEE---VLAAVQKEKPIMLTGTALMTTTMYAFKEVND 196 (258)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECC----SHH---HHHHHHHHCCSEEEEECCCTTTTTHHHHHHH
T ss_pred CeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCC----HHH---HHHHHHHcCCCEEEEEeeccCCHHHHHHHHH
Confidence 45655555556556667777778888888876532 222 233 444455567888888752 345667777
Q ss_pred HHHhCCCCCCCeEEEEe
Q 002267 259 VAKSLGMTAGSYVWIAT 275 (945)
Q Consensus 259 ~a~~~g~~~~~~~wi~~ 275 (945)
++++.|.. -.++++.
T Consensus 197 ~l~~~~~~--~~v~vGG 211 (258)
T 2i2x_B 197 MLLENGIK--IPFACGG 211 (258)
T ss_dssp HHHTTTCC--CCEEEES
T ss_pred HHHhcCCC--CcEEEEC
Confidence 88777653 2345543
No 433
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=20.94 E-value=3.9e+02 Score=22.73 Aligned_cols=71 Identities=13% Similarity=0.215 Sum_probs=43.3
Q ss_pred chHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEc--ChhhHHHHHHHHHhCCCCCCCeEEEEe
Q 002267 198 NGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHV--NPDTGLTIFSVAKSLGMTAGSYVWIAT 275 (945)
Q Consensus 198 ~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~--~~~~~~~~~~~a~~~g~~~~~~~wi~~ 275 (945)
.....+...+++.|....... . .+....+..+....+|+|++.. ...+...++++.++.+....-.+.+.+
T Consensus 16 ~~~~~l~~~L~~~~~~~~v~~-~------~~~~~a~~~l~~~~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pii~~s 88 (144)
T 3kht_A 16 DDIALIRRVLDRKDIHCQLEF-V------DNGAKALYQVQQAKYDLIILDIGLPIANGFEVMSAVRKPGANQHTPIVILT 88 (144)
T ss_dssp HHHHHHHHHHHHTTCCEEEEE-E------SSHHHHHHHHTTCCCSEEEECTTCGGGCHHHHHHHHHSSSTTTTCCEEEEE
T ss_pred HHHHHHHHHHHhcCCCeeEEE-E------CCHHHHHHHhhcCCCCEEEEeCCCCCCCHHHHHHHHHhcccccCCCEEEEe
Confidence 356777888888887522111 1 1234556666777899999974 345678888888874332222344444
No 434
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=20.56 E-value=2.8e+02 Score=23.86 Aligned_cols=82 Identities=0% Similarity=0.029 Sum_probs=0.0
Q ss_pred EEEEEEe-CCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcC-------hh-hHHHH
Q 002267 186 VIAIFVD-DDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN-------PD-TGLTI 256 (945)
Q Consensus 186 v~ii~~d-~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~-------~~-~~~~~ 256 (945)
|.|+|.. ....+..++.+.+.+++.|.++.....-. .+..++ .+.|.|++.++ ++ .+..+
T Consensus 1 i~I~Y~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~--~~~~~l---------~~~d~iiig~pty~~g~~p~~~~~~f 69 (138)
T 5nul_A 1 MKIVYWSGTGNTEKMAELIAKGIIESGKDVNTINVSD--VNIDEL---------LNEDILILGCSAMTDEVLEESEFEPF 69 (138)
T ss_dssp CEEEEECSSSHHHHHHHHHHHHHHHTTCCCEEEEGGG--CCHHHH---------TTCSEEEEEECCBTTTBCCTTTHHHH
T ss_pred CEEEEECCCchHHHHHHHHHHHHHHCCCeEEEEEhhh--CCHHHH---------hhCCEEEEEcCccCCCCCChHHHHHH
Q ss_pred HHHHHhCCCCCCCeEEEEeCCCc
Q 002267 257 FSVAKSLGMTAGSYVWIATDWLP 279 (945)
Q Consensus 257 ~~~a~~~g~~~~~~~wi~~~~~~ 279 (945)
+...... +.+..+..+.+.++.
T Consensus 70 l~~l~~~-l~~k~~~~f~t~g~~ 91 (138)
T 5nul_A 70 IEEISTK-ISGKKVALFGSYGWG 91 (138)
T ss_dssp HHHHGGG-CTTCEEEEEEEESSS
T ss_pred HHHHHhh-cCCCEEEEEEecCCC
No 435
>3p3v_A PTS system, N-acetylgalactosamine-specific IIB CO; PTS IIB component, phosphotransferase, sugar transport, STRU genomics; HET: PGE; 1.65A {Streptococcus pyogenes serotype M1} SCOP: c.38.1.0
Probab=20.53 E-value=1.5e+02 Score=27.07 Aligned_cols=80 Identities=13% Similarity=0.070 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHcCCeEEEEEEEeCCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcC
Q 002267 170 QMHAVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN 249 (945)
Q Consensus 170 ~~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~ 249 (945)
+++ +..+.++++.+++.++ +|..........+-+.+.-.|+++... +.++....+.+-+ .+-++++++-+
T Consensus 18 HGQ-~~~W~k~~~~~~IiVv-nD~vA~D~~~k~~lk~A~P~gvk~~i~-------sve~ai~~~~~~~-~~~~v~il~k~ 87 (163)
T 3p3v_A 18 HGQ-GQLWVKFLNCNTVIVA-NDAVSEDKIQQSLMKTVIPSSIAIRFF-------SIQKVIDIIHKAS-PAQSIFIVVKD 87 (163)
T ss_dssp GST-HHHHHHHTTCSEEEEE-CHHHHHCHHHHHHHGGGSCTTSEEEEE-------CHHHHHHHGGGCC-TTCEEEEEESS
T ss_pred hhh-hhhhhhhcCCCEEEEE-cccccCCHHHHHHHHhhCCCCceEEEE-------EHHHHHHHHhccC-CCceEEEEECC
Confidence 466 7789999999999665 344333444555544444457776532 3445555555544 56789999999
Q ss_pred hhhHHHHHHH
Q 002267 250 PDTGLTIFSV 259 (945)
Q Consensus 250 ~~~~~~~~~~ 259 (945)
+.++.++++.
T Consensus 88 p~d~~~lv~~ 97 (163)
T 3p3v_A 88 LQDAKLLVEG 97 (163)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHc
Confidence 9999888643
No 436
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=20.43 E-value=1.6e+02 Score=29.80 Aligned_cols=64 Identities=14% Similarity=0.002 Sum_probs=44.8
Q ss_pred CeEEEEEEE-eCCcccchHHHHHHHHhhcCc------EEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEcC
Q 002267 183 WREVIAIFV-DDDYGRNGISVLGDALSKKRA------KISYKAPFSPGASRSAINSLLVGANLMESRVFVVHVN 249 (945)
Q Consensus 183 w~~v~ii~~-d~~~g~~~~~~l~~~l~~~g~------~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~~ 249 (945)
-+.|++|.. +++|.....+.+++.++++|. .+..... ..+.+.-...++++.+.++|.||+.+.
T Consensus 8 t~~IGvi~~~~~p~~~~~~~gi~~~l~~~Gy~~g~~v~l~~~~~---~~~~~~~~~~~~~l~~~~vDgII~~~~ 78 (302)
T 2qh8_A 8 TAKVAVSQIVEHPALDATRQGLLDGLKAKGYEEGKNLEFDYKTA---QGNPAIAVQIARQFVGENPDVLVGIAT 78 (302)
T ss_dssp CEEEEEEESSCCHHHHHHHHHHHHHHHHTTCCBTTTEEEEEEEC---TTCHHHHHHHHHHHHHTCCSEEEEESH
T ss_pred CcEEEEEEeccChhHHHHHHHHHHHHHHcCCCCCCceEEEEecC---CCCHHHHHHHHHHHHhCCCCEEEECCh
Confidence 467888732 356667788999999999998 4432221 134455567788888889999998753
No 437
>3szu_A ISPH, 4-hydroxy-3-methylbut-2-ENYL diphosphate reductas; 3Fe-4S iron-sulfur cluster, conserved cysteine, IPP and DMAP production final STEP; HET: H6P; 1.40A {Escherichia coli} PDB: 3szl_A* 3f7t_A* 3szo_A* 3t0f_A* 3t0g_A* 3urk_A* 3utc_A* 3utd_A* 3uv3_A* 3uv6_A* 3uv7_A* 3uwm_A* 3ke8_A* 3ke9_A* 3kef_A* 3kel_A 3kem_A*
Probab=20.41 E-value=90 Score=32.19 Aligned_cols=50 Identities=22% Similarity=0.380 Sum_probs=40.5
Q ss_pred EecCCCChHHHHHHHHH-HHhc-CcEEEEccCChhHHHHHHHhhcccCccEE
Q 002267 94 IRDTNCSGFVGTMEALQ-LMEN-EVVAAIGPQSSGIAHVISHVVNELNVPLL 143 (945)
Q Consensus 94 ~~D~~~~~~~a~~~a~~-li~~-~v~aiiGp~~s~~~~~va~~~~~~~iP~I 143 (945)
..||=|+..+-.+.+.+ |..+ .+..|||...|+.+.-+.+++...+.|..
T Consensus 204 ~~ntIC~AT~~RQ~av~~lA~~vD~miVVGg~nSSNT~rL~eia~~~g~~ty 255 (328)
T 3szu_A 204 RKDDICYATTNRQEAVRALAEQAEVVLVVGSKNSSNSNRLAELAQRMGKRAF 255 (328)
T ss_dssp SSCSCCHHHHHHHHHHHHHHHHCSEEEEECCTTCHHHHHHHHHHHHTTCEEE
T ss_pred CCCCcCHHHHHHHHHHHHHHHhCCEEEEeCCCCCchHHHHHHHHHHhCCCEE
Confidence 46888988877765554 5444 88999999999999999999999988743
No 438
>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A
Probab=20.21 E-value=6e+02 Score=26.57 Aligned_cols=132 Identities=17% Similarity=0.114 Sum_probs=75.1
Q ss_pred EEEEEEeccCCccccchHHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCChHHHHHHHHHHHhc--CcEEEEccCChhHH
Q 002267 51 VRIGALFTYDSVIGRAAGPAIAAAVDDVNSDPSILPGTTLNFVIRDTNCSGFVGTMEALQLMEN--EVVAAIGPQSSGIA 128 (945)
Q Consensus 51 i~IG~l~~l~~~~g~~~~~a~~~Ave~iN~~~~il~g~~l~l~~~D~~~~~~~a~~~a~~li~~--~v~aiiGp~~s~~~ 128 (945)
-.|+.+|.-.+. ..+.+++.|+.++ +|..+.+...++.-.-...+.-+.+.++. .++++=++. .+
T Consensus 72 K~va~lF~e~ST---RTR~SFE~A~~~L-------Gg~vi~l~~~~ss~~kgEsl~DTarvLs~~~D~IviR~~~-~~-- 138 (365)
T 4amu_A 72 KNIAILFQKDST---RTRCAFEVAASDL-------GAGVTYIGPSGSNMGKKESIEDTAKVLGRFYDGIEFRGFA-QS-- 138 (365)
T ss_dssp CEEEEEESSCCH---HHHHHHHHHHHHH-------TCEEEEECHHHHCCSSSSCHHHHHHHHHHHCSEEEEECSC-HH--
T ss_pred ceEEEEecCCCc---hHHHHHHHHHHhC-------CCEEEEcCCccccCCCCcCHHHHHHHHHhhCcEEEEecCC-hh--
Confidence 468888887654 5789999999998 24445443333322111112222223333 444444443 22
Q ss_pred HHHHHhhcccCccEEecccCCCCCCCCCCCceEEecCChhHHHHHHHHHH---HHcC---CeEEEEEEEeCCcccchHHH
Q 002267 129 HVISHVVNELNVPLLSFGATDPTLTSLQYPYFLRTTQSDYYQMHAVADLV---EYYG---WREVIAIFVDDDYGRNGISV 202 (945)
Q Consensus 129 ~~va~~~~~~~iP~Is~~a~~~~ls~~~~p~~~r~~p~d~~~~~ai~~~l---~~~~---w~~v~ii~~d~~~g~~~~~~ 202 (945)
.+..+++..+||+|.-. + +..-| .+++++++ +++| ..+|+++. |.- ...+..
T Consensus 139 -~~~~lA~~s~vPVINa~-~-----~~~HP------------tQaLaDl~Ti~E~~G~l~glkva~vG--D~~-nnva~S 196 (365)
T 4amu_A 139 -DVDALVKYSGVPVWNGL-T-----DDEHP------------TQIIADFMTMKEKFGNLKNKKIVFIG--DYK-NNVGVS 196 (365)
T ss_dssp -HHHHHHHHHCSCEEEEE-C-----SSCCH------------HHHHHHHHHHHHHHSSCTTCEEEEES--STT-SHHHHH
T ss_pred -HHHHHHHhCCCCEEeCC-C-----CCCCc------------HHHHHHHHHHHHHhCCCCCCEEEEEC--CCC-cchHHH
Confidence 33455566789999732 2 11112 35666654 5665 46777664 321 247788
Q ss_pred HHHHHhhcCcEEEEe
Q 002267 203 LGDALSKKRAKISYK 217 (945)
Q Consensus 203 l~~~l~~~g~~v~~~ 217 (945)
+...+...|.+|...
T Consensus 197 l~~~~~~lG~~v~~~ 211 (365)
T 4amu_A 197 TMIGAAFNGMHVVMC 211 (365)
T ss_dssp HHHHHHHTTCEEEEE
T ss_pred HHHHHHHcCCEEEEE
Confidence 888888899887654
No 439
>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A
Probab=20.20 E-value=2.1e+02 Score=31.21 Aligned_cols=88 Identities=16% Similarity=0.139 Sum_probs=58.6
Q ss_pred HHHHHHHHHHcCCeEEEEEEEeCCcccchHHHHHHHHhhcCcEEEEeecCCCCCChHHHHHHHHhhccCCceEEEEEc--
Q 002267 171 MHAVADLVEYYGWREVIAIFVDDDYGRNGISVLGDALSKKRAKISYKAPFSPGASRSAINSLLVGANLMESRVFVVHV-- 248 (945)
Q Consensus 171 ~~ai~~~l~~~~w~~v~ii~~d~~~g~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~d~~~~l~~l~~~~~~vivl~~-- 248 (945)
...+|...+.. -.-+.+++ |..|..+..+.+...-+.-++.|..+..+. +.+ ++.+.+..++|+|++..
T Consensus 70 ~~~iA~~y~~~-A~~IsvLT-d~~~F~gs~~dL~~vr~~v~lPvLrKDFI~-----d~~--Qi~ea~~~GAD~ILLi~a~ 140 (452)
T 1pii_A 70 PARIAAIYKHY-ASAISVLT-DEKYFQGSFNFLPIVSQIAPQPILCKDFII-----DPY--QIYLARYYQADACLLMLSV 140 (452)
T ss_dssp HHHHHHHHTTT-CSEEEEEC-CSTTTCCCTTHHHHHHHHCCSCEEEESCCC-----SHH--HHHHHHHTTCSEEEEETTT
T ss_pred HHHHHHHHHhh-CcEEEEEe-cccccCCCHHHHHHHHHhcCCCeEEEeccC-----CHH--HHHHHHHcCCCEEEEEccc
Confidence 34455544444 56666665 566666666767666566677776555332 223 46668889999999975
Q ss_pred -ChhhHHHHHHHHHhCCCCC
Q 002267 249 -NPDTGLTIFSVAKSLGMTA 267 (945)
Q Consensus 249 -~~~~~~~~~~~a~~~g~~~ 267 (945)
.......++..++++||..
T Consensus 141 l~~~~l~~l~~~a~~lgm~~ 160 (452)
T 1pii_A 141 LDDDQYRQLAAVAHSLEMGV 160 (452)
T ss_dssp CCHHHHHHHHHHHHHTTCEE
T ss_pred CCHHHHHHHHHHHHHcCCeE
Confidence 3467889999999999843
Done!