BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 002268
         (944 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9FLH0|NMCP_ARATH Putative nuclear matrix constituent protein 1-like protein
           OS=Arabidopsis thaliana GN=At5g65770 PE=2 SV=1
          Length = 1042

 Score =  888 bits (2294), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 518/972 (53%), Positives = 697/972 (71%), Gaps = 83/972 (8%)

Query: 2   ASPSSGRLAITPSSRVLQSPLSDESIWKRLKEAGLDEVSIKRRDKAALIAYIAKLETEIF 61
           ++ ++ RL ITP+SRVL+SPL++E +WKRLK+AG DE SIK RDKAALIAYIAKLE+E++
Sbjct: 15  STAATNRLTITPNSRVLKSPLTEEIMWKRLKDAGFDEQSIKNRDKAALIAYIAKLESEVY 74

Query: 62  EHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLG 121
           ++QH+MGLL+LEK EL+S+YE+IKAS + ++L    ++++++SA+AEA+KREESLKK +G
Sbjct: 75  DYQHNMGLLLLEKNELSSQYEEIKASVDESDLTHMREKSAYVSALAEAKKREESLKKDVG 134

Query: 122 VEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQA 181
           + KECI+SLEK +HE+RAE AETKV+A S  +EA  M+E+A KK A+AEAK+ AAE+LQA
Sbjct: 135 IAKECISSLEKTLHEMRAECAETKVSAGSTMSEAHVMIEDALKKLADAEAKMRAAEALQA 194

Query: 182 EANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHE 241
           EANRYHR AERKL+EV +REDDL+RR+ASFK++CE KE E++ ERQ+L++R+K LQQEHE
Sbjct: 195 EANRYHRIAERKLKEVESREDDLTRRLASFKSECETKENEMVIERQTLNERRKSLQQEHE 254

Query: 242 RLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLK 301
           RLLDAQ  LN+REDHI ++ QEL+  EK L+ ++   EE+ KA  ++KSNL++ L    K
Sbjct: 255 RLLDAQVSLNQREDHIFARSQELAELEKGLDTAKTTFEEERKAFEDKKSNLEIALALCAK 314

Query: 302 REE---------------------------AVIEREASLQKKEQKLLVSQETLASKESNE 334
           REE                           AV ERE+SL KKEQ+LLV++E +ASKES  
Sbjct: 315 REEVCFYSHNSLLFLVLHYRSSKKFLGDKIAVSERESSLLKKEQELLVAEEKIASKESEL 374

Query: 335 IQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREH 394
           IQ ++AN E  LR ++S+ EAEL  K K  E EIE KRRAWELR++D+ QRE+ + E+EH
Sbjct: 375 IQNVLANQEVILRKRKSDVEAELECKSKSVEVEIESKRRAWELREVDIKQREDLVGEKEH 434

Query: 395 DLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQK 454
           DLEVQSRAL +KEKD+ E+S  L+EKE  L+A E++ + K ++L+ EKE +  +  +LQ+
Sbjct: 435 DLEVQSRALAEKEKDITEKSFNLDEKEKNLVATEEDINRKTTMLEDEKERLRKLDLELQQ 494

Query: 455 SLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLE 514
           SL+SL++K+K+V+ A  KLEA+KSE  ELS LE+KLKEELD +RAQKLE++ E D+L++E
Sbjct: 495 SLTSLEDKRKRVDSATQKLEALKSETSELSTLEMKLKEELDDLRAQKLEMLAEADRLKVE 554

Query: 515 KAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDS 574
           KAKFEAEWE ID KREELRKEAE +  +R   S  LKDERD++++ERDA+R+QHK DV+S
Sbjct: 555 KAKFEAEWEHIDVKREELRKEAEYITRQREAFSMYLKDERDNIKEERDALRNQHKNDVES 614

Query: 575 LNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFRERE 634
           LNREREEFMNKMV EHSEW +KIQ+ERADFLLGIEMQKR+LE CIE +REELE+S R+RE
Sbjct: 615 LNREREEFMNKMVEEHSEWLSKIQRERADFLLGIEMQKRELEYCIENKREELENSSRDRE 674

Query: 635 KAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSI 694
           KAFE+EK  E ++I SLKE AEKELE V +E+KRLD ER+EI +DR+RR+REWAEL +S+
Sbjct: 675 KAFEQEKKLEEERIQSLKEMAEKELEHVQVELKRLDAERLEIKLDRERREREWAELKDSV 734

Query: 695 EELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKK 754
           EEL VQR+KLE QR +L A+R+EI+ E E LKKLE+LK+A+D M++++MQ S LE S +K
Sbjct: 735 EELKVQREKLETQRHMLRAERDEIRHEIEELKKLENLKVALDDMSMAKMQLSNLERSWEK 794

Query: 755 ISAKRHLNQQTSLAHADLGSDQKFD-------VTNNGDRFNTPSVQKTASASPPSLARFS 807
           +SA   L Q+       +  D + D       V+N+ D +N+ S+++    +P S   FS
Sbjct: 795 VSA---LKQKV------VSRDDELDLQNGVSTVSNSEDGYNS-SMERQNGLTPSSATPFS 844

Query: 808 WIKRFADLVFKHSGENSVENDEEKSPTSDHEDASLTINSRKRQPVRYSFGEPKVILEVPS 867
           WIKR  +L+FK S E S                           + + + E      VPS
Sbjct: 845 WIKRCTNLIFKTSPEKST--------------------------LMHHYEEEGG---VPS 875

Query: 868 ENEVVKRTVDLESENNQNAAQKCKQSVSEDGIHAARKRRVDVDCVDPSELLMQNNKRRKQ 927
           E       + LES   +  A     S++ + + A RKRR +    + SE    NNK+RK 
Sbjct: 876 EK------LKLESSRREEKAYTEGLSIAVERLEAGRKRRGNTSGDETSE--PSNNKKRKH 927

Query: 928 QEDFPRNSSEEA 939
             D  +  S+EA
Sbjct: 928 --DVTQKYSDEA 937


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.309    0.125    0.323 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 307,734,686
Number of Sequences: 539616
Number of extensions: 12995575
Number of successful extensions: 136616
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 5403
Number of HSP's that attempted gapping in prelim test: 75602
Number of HSP's gapped (non-prelim): 28036
length of query: 944
length of database: 191,569,459
effective HSP length: 127
effective length of query: 817
effective length of database: 123,038,227
effective search space: 100522231459
effective search space used: 100522231459
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 66 (30.0 bits)