Query 002268
Match_columns 944
No_of_seqs 40 out of 42
Neff 3.3
Searched_HMMs 46136
Date Thu Mar 28 20:17:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002268.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002268hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK02224 chromosome segregatio 99.4 3.8E-06 8.3E-11 100.3 66.9 148 125-279 251-401 (880)
2 KOG0161 Myosin class II heavy 99.1 0.00022 4.7E-09 92.2 79.7 367 342-723 1119-1529(1930)
3 PRK02224 chromosome segregatio 98.9 0.00053 1.2E-08 82.4 71.8 92 109-204 148-239 (880)
4 TIGR00606 rad50 rad50. This fa 98.9 0.0013 2.7E-08 83.3 79.9 75 128-202 397-471 (1311)
5 TIGR00606 rad50 rad50. This fa 98.9 0.0013 2.8E-08 83.3 73.8 77 170-247 576-652 (1311)
6 PRK03918 chromosome segregatio 98.5 0.0086 1.9E-07 71.9 72.1 42 212-253 244-285 (880)
7 TIGR02168 SMC_prok_B chromosom 98.4 0.019 4.1E-07 69.7 77.8 10 27-36 124-133 (1179)
8 PRK03918 chromosome segregatio 98.2 0.033 7E-07 67.1 66.7 15 20-34 32-46 (880)
9 TIGR02168 SMC_prok_B chromosom 98.2 0.036 7.7E-07 67.3 83.8 28 679-706 994-1021(1179)
10 PRK01156 chromosome segregatio 98.1 0.06 1.3E-06 65.6 73.5 56 654-709 671-726 (895)
11 KOG0161 Myosin class II heavy 98.1 0.13 2.9E-06 67.8 83.1 282 36-328 835-1135(1930)
12 PRK01156 chromosome segregatio 98.0 0.094 2E-06 64.0 66.0 55 674-728 677-731 (895)
13 PF12128 DUF3584: Protein of u 97.8 0.26 5.6E-06 62.7 68.1 207 479-689 594-810 (1201)
14 COG1196 Smc Chromosome segrega 97.7 0.34 7.3E-06 61.5 81.5 94 54-149 216-312 (1163)
15 TIGR02169 SMC_prok_A chromosom 97.7 0.32 7E-06 59.7 81.5 16 25-40 120-135 (1164)
16 KOG1029 Endocytic adaptor prot 97.6 0.096 2.1E-06 63.5 31.3 217 347-587 316-566 (1118)
17 TIGR02169 SMC_prok_A chromosom 97.5 0.5 1.1E-05 58.1 85.0 32 695-726 982-1013(1164)
18 PF07888 CALCOCO1: Calcium bin 97.3 0.72 1.6E-05 54.8 43.6 51 684-736 409-459 (546)
19 COG0419 SbcC ATPase involved i 97.1 1.4 3.1E-05 54.5 70.9 87 178-264 274-366 (908)
20 PF01576 Myosin_tail_1: Myosin 97.1 0.00013 2.9E-09 88.7 0.0 509 106-698 41-566 (859)
21 PF10174 Cast: RIM-binding pro 97.0 1.7 3.7E-05 53.7 63.6 322 296-629 182-533 (775)
22 COG1196 Smc Chromosome segrega 96.8 2.7 5.9E-05 53.7 75.3 190 25-218 122-342 (1163)
23 PF00261 Tropomyosin: Tropomyo 96.6 1.1 2.4E-05 47.5 24.3 59 234-292 92-150 (237)
24 COG0419 SbcC ATPase involved i 96.5 3.8 8.3E-05 50.9 72.2 62 477-539 558-619 (908)
25 PF00261 Tropomyosin: Tropomyo 96.4 1.7 3.7E-05 46.0 26.1 222 176-417 13-234 (237)
26 KOG0250 DNA repair protein RAD 96.4 5 0.00011 51.1 33.6 107 442-548 357-464 (1074)
27 PF07888 CALCOCO1: Calcium bin 96.1 4.6 0.0001 48.3 41.1 96 488-587 353-448 (546)
28 KOG0933 Structural maintenance 96.1 4.6 0.0001 51.1 28.6 237 152-398 679-917 (1174)
29 PRK12704 phosphodiesterase; Pr 96.0 0.32 6.9E-06 57.2 18.1 77 350-433 59-135 (520)
30 PRK11637 AmiB activator; Provi 95.9 3.6 7.9E-05 46.8 25.3 44 300-343 92-135 (428)
31 PF00038 Filament: Intermediat 95.5 4.5 9.9E-05 43.6 34.0 232 489-735 58-295 (312)
32 TIGR03319 YmdA_YtgF conserved 95.5 0.68 1.5E-05 54.5 18.1 75 350-431 53-127 (514)
33 PF08317 Spc7: Spc7 kinetochor 95.2 3.7 8E-05 45.5 21.9 165 398-568 128-292 (325)
34 KOG4674 Uncharacterized conser 95.2 18 0.00039 48.7 73.5 454 40-528 861-1382(1822)
35 PRK00106 hypothetical protein; 95.1 1.9 4E-05 51.4 20.1 74 351-431 75-148 (535)
36 PRK11637 AmiB activator; Provi 94.9 9 0.00019 43.8 27.9 26 591-616 158-183 (428)
37 PF01576 Myosin_tail_1: Myosin 94.9 0.0071 1.5E-07 74.2 0.0 221 45-272 202-429 (859)
38 PRK12704 phosphodiesterase; Pr 94.6 0.51 1.1E-05 55.6 13.9 62 360-424 58-119 (520)
39 PF10174 Cast: RIM-binding pro 94.5 17 0.00038 45.3 61.2 243 48-333 71-316 (775)
40 TIGR03319 YmdA_YtgF conserved 94.3 0.64 1.4E-05 54.7 13.8 70 359-431 51-120 (514)
41 KOG0964 Structural maintenance 94.3 22 0.00048 45.4 34.8 299 205-520 172-488 (1200)
42 PRK00106 hypothetical protein; 94.1 2.5 5.4E-05 50.4 18.0 34 867-907 452-487 (535)
43 PF12072 DUF3552: Domain of un 93.5 1.7 3.7E-05 45.2 13.7 70 356-425 61-130 (201)
44 PHA02562 46 endonuclease subun 92.4 26 0.00056 40.7 27.6 89 455-543 307-395 (562)
45 KOG4674 Uncharacterized conser 92.0 61 0.0013 44.1 77.5 453 47-523 575-1098(1822)
46 KOG0018 Structural maintenance 91.6 52 0.0011 42.6 31.8 295 359-680 181-481 (1141)
47 KOG0977 Nuclear envelope prote 91.1 43 0.00092 40.6 28.3 302 139-499 81-384 (546)
48 PF12072 DUF3552: Domain of un 90.4 8.1 0.00018 40.3 14.4 59 374-432 72-130 (201)
49 PF12128 DUF3584: Protein of u 90.0 74 0.0016 41.5 72.4 85 490-574 676-765 (1201)
50 PHA02562 46 endonuclease subun 88.6 54 0.0012 38.1 33.9 99 434-539 307-405 (562)
51 PRK04863 mukB cell division pr 87.7 1.2E+02 0.0026 41.0 43.0 105 171-276 293-397 (1486)
52 KOG0964 Structural maintenance 87.5 1E+02 0.0022 40.0 33.9 115 314-430 170-297 (1200)
53 PRK12705 hypothetical protein; 87.5 35 0.00076 40.9 18.5 60 357-423 61-120 (508)
54 PF05701 WEMBL: Weak chloropla 86.4 80 0.0017 37.7 47.8 57 423-479 282-338 (522)
55 COG1340 Uncharacterized archae 85.1 74 0.0016 36.0 30.2 54 394-447 30-83 (294)
56 PF00038 Filament: Intermediat 83.8 69 0.0015 34.7 36.9 241 441-698 2-250 (312)
57 PF13851 GAS: Growth-arrest sp 83.7 63 0.0014 34.1 18.8 143 480-639 22-168 (201)
58 PF10146 zf-C4H2: Zinc finger- 81.8 59 0.0013 35.3 15.7 77 628-712 4-80 (230)
59 KOG1029 Endocytic adaptor prot 81.7 1.6E+02 0.0035 37.5 29.7 57 439-495 316-372 (1118)
60 PF05667 DUF812: Protein of un 80.8 1.5E+02 0.0032 36.4 24.8 216 254-489 320-544 (594)
61 PF05557 MAD: Mitotic checkpoi 80.5 1.7 3.7E-05 52.7 4.3 69 256-325 258-326 (722)
62 KOG0996 Structural maintenance 79.3 2.3E+02 0.0049 37.6 41.5 338 236-581 269-612 (1293)
63 PF13863 DUF4200: Domain of un 77.1 65 0.0014 30.6 12.9 89 364-462 12-100 (126)
64 PF08317 Spc7: Spc7 kinetochor 76.5 1.4E+02 0.0029 33.6 18.6 30 493-522 231-260 (325)
65 smart00787 Spc7 Spc7 kinetocho 75.8 1.5E+02 0.0032 33.6 21.8 167 396-568 121-287 (312)
66 PF12718 Tropomyosin_1: Tropom 75.6 94 0.002 31.3 16.5 90 182-282 11-100 (143)
67 PRK09039 hypothetical protein; 74.5 1.6E+02 0.0035 33.5 18.7 115 116-234 65-179 (343)
68 PF05557 MAD: Mitotic checkpoi 74.3 24 0.00051 43.2 11.4 22 619-640 618-639 (722)
69 PF06818 Fez1: Fez1; InterPro 71.1 1.5E+02 0.0032 32.2 14.8 130 444-595 32-170 (202)
70 KOG0612 Rho-associated, coiled 70.9 3.6E+02 0.0079 36.0 39.6 28 686-714 1016-1043(1317)
71 TIGR01005 eps_transp_fam exopo 70.6 2.7E+02 0.0058 34.3 20.1 71 147-217 184-262 (754)
72 TIGR03185 DNA_S_dndD DNA sulfu 69.8 2.7E+02 0.0058 34.0 33.8 24 9-36 30-53 (650)
73 PRK12705 hypothetical protein; 69.5 2.6E+02 0.0055 34.0 17.9 60 350-413 65-124 (508)
74 PF00769 ERM: Ezrin/radixin/mo 69.2 90 0.002 33.9 13.1 79 443-521 12-90 (246)
75 PF11559 ADIP: Afadin- and alp 68.9 56 0.0012 32.3 10.7 76 396-474 71-146 (151)
76 PF05262 Borrelia_P83: Borreli 67.6 2.8E+02 0.006 33.6 17.5 70 405-474 189-258 (489)
77 PLN03188 kinesin-12 family pro 66.0 2E+02 0.0044 38.3 17.0 151 111-287 1079-1250(1320)
78 TIGR01843 type_I_hlyD type I s 65.2 2.3E+02 0.0049 31.5 20.4 53 2-65 47-102 (423)
79 PF09789 DUF2353: Uncharacteri 63.1 2.8E+02 0.0061 31.9 25.3 40 693-732 190-229 (319)
80 PF09755 DUF2046: Uncharacteri 62.4 2.9E+02 0.0063 31.8 20.5 29 570-598 113-141 (310)
81 TIGR02680 conserved hypothetic 61.5 5.4E+02 0.012 34.6 29.6 118 62-194 711-830 (1353)
82 PF04111 APG6: Autophagy prote 61.4 1.3E+02 0.0028 33.9 12.8 16 685-700 166-181 (314)
83 PF10473 CENP-F_leu_zip: Leuci 59.2 2.1E+02 0.0046 29.2 18.2 88 468-555 7-94 (140)
84 KOG0994 Extracellular matrix g 58.9 6E+02 0.013 34.3 31.6 204 222-431 1520-1740(1758)
85 TIGR01000 bacteriocin_acc bact 58.1 2.6E+02 0.0057 32.4 15.0 16 46-61 106-121 (457)
86 PRK09039 hypothetical protein; 57.5 3.4E+02 0.0074 31.0 20.1 51 465-515 117-167 (343)
87 KOG0804 Cytoplasmic Zn-finger 57.3 2.9E+02 0.0063 33.3 15.0 109 492-623 347-455 (493)
88 PF04111 APG6: Autophagy prote 57.0 1.6E+02 0.0034 33.3 12.6 34 479-512 100-133 (314)
89 PF09755 DUF2046: Uncharacteri 55.3 3.8E+02 0.0082 30.9 24.0 160 506-672 34-200 (310)
90 PF00769 ERM: Ezrin/radixin/mo 55.2 3E+02 0.0066 30.0 14.0 122 162-283 3-124 (246)
91 TIGR03007 pepcterm_ChnLen poly 54.5 4E+02 0.0088 31.0 18.9 36 151-186 155-190 (498)
92 PF09726 Macoilin: Transmembra 54.5 5.4E+02 0.012 32.4 26.5 54 357-418 543-597 (697)
93 PF12126 DUF3583: Protein of u 51.6 4.3E+02 0.0094 30.4 14.9 121 448-579 4-124 (324)
94 COG4026 Uncharacterized protei 51.4 1.6E+02 0.0036 32.6 11.1 83 480-566 118-205 (290)
95 TIGR03185 DNA_S_dndD DNA sulfu 49.8 5.7E+02 0.012 31.3 36.2 47 658-704 422-468 (650)
96 KOG0976 Rho/Rac1-interacting s 49.0 7.3E+02 0.016 32.3 37.5 129 362-500 262-401 (1265)
97 PRK04863 mukB cell division pr 48.0 9.2E+02 0.02 33.2 48.5 30 333-362 505-534 (1486)
98 PF10146 zf-C4H2: Zinc finger- 47.7 3.7E+02 0.008 29.4 13.2 30 447-476 39-68 (230)
99 COG2433 Uncharacterized conser 47.7 2.7E+02 0.0059 34.6 13.2 71 466-540 424-494 (652)
100 PF10186 Atg14: UV radiation r 46.1 3.9E+02 0.0085 28.3 16.5 91 250-340 65-155 (302)
101 KOG0933 Structural maintenance 43.3 9.5E+02 0.021 32.0 51.0 201 91-293 240-472 (1174)
102 PRK06800 fliH flagellar assemb 43.3 76 0.0017 34.2 7.0 50 676-725 36-85 (228)
103 PF09325 Vps5: Vps5 C terminal 42.6 4E+02 0.0087 27.5 17.3 65 170-237 162-235 (236)
104 PF10212 TTKRSYEDQ: Predicted 41.9 7E+02 0.015 30.7 15.2 111 194-310 404-514 (518)
105 COG1579 Zn-ribbon protein, pos 41.3 5.4E+02 0.012 28.6 20.3 68 339-410 15-82 (239)
106 TIGR02977 phageshock_pspA phag 40.7 4.7E+02 0.01 27.8 18.1 124 26-149 2-137 (219)
107 PF12329 TMF_DNA_bd: TATA elem 38.5 3E+02 0.0064 25.1 9.1 66 452-527 3-68 (74)
108 PRK00409 recombination and DNA 36.5 8E+02 0.017 31.2 15.4 105 256-360 489-593 (782)
109 PF08614 ATG16: Autophagy prot 36.2 3.8E+02 0.0082 27.9 10.8 77 216-292 70-146 (194)
110 smart00787 Spc7 Spc7 kinetocho 35.6 7.1E+02 0.015 28.4 15.1 27 233-259 69-95 (312)
111 COG1340 Uncharacterized archae 35.2 7.4E+02 0.016 28.4 28.6 25 615-639 132-156 (294)
112 PRK10698 phage shock protein P 35.0 6.1E+02 0.013 27.3 16.0 65 26-90 2-70 (222)
113 PF07106 TBPIP: Tat binding pr 33.5 4.4E+02 0.0094 26.7 10.5 31 443-473 72-102 (169)
114 PF09730 BicD: Microtubule-ass 33.4 1.1E+03 0.025 30.0 20.7 224 554-807 18-260 (717)
115 PF06476 DUF1090: Protein of u 33.3 1.5E+02 0.0032 29.2 6.9 43 127-169 45-89 (115)
116 TIGR01069 mutS2 MutS2 family p 32.9 7.6E+02 0.016 31.4 14.4 43 429-471 518-560 (771)
117 PF03904 DUF334: Domain of unk 32.1 7.5E+02 0.016 27.5 14.7 111 492-608 43-154 (230)
118 PRK15422 septal ring assembly 32.0 3E+02 0.0065 26.1 8.1 56 464-519 11-66 (79)
119 PF03962 Mnd1: Mnd1 family; I 31.9 6.3E+02 0.014 26.6 11.9 38 446-483 65-102 (188)
120 PF10473 CENP-F_leu_zip: Leuci 31.9 5.8E+02 0.013 26.2 16.6 100 232-331 1-100 (140)
121 KOG0250 DNA repair protein RAD 31.7 1.4E+03 0.03 30.6 52.1 131 129-263 278-409 (1074)
122 KOG0612 Rho-associated, coiled 31.4 1.5E+03 0.032 30.8 47.7 66 408-473 626-693 (1317)
123 PF03962 Mnd1: Mnd1 family; I 30.6 6.7E+02 0.014 26.5 12.1 21 492-512 76-96 (188)
124 COG1579 Zn-ribbon protein, pos 30.5 7.9E+02 0.017 27.3 22.9 90 505-598 95-184 (239)
125 PF04871 Uso1_p115_C: Uso1 / p 29.2 6.1E+02 0.013 25.6 14.2 37 472-508 78-114 (136)
126 PF11932 DUF3450: Protein of u 29.1 7.5E+02 0.016 26.6 13.4 65 488-552 38-109 (251)
127 KOG0977 Nuclear envelope prote 28.9 1.2E+03 0.026 28.9 35.5 275 353-685 90-377 (546)
128 PF09731 Mitofilin: Mitochondr 28.8 1.1E+03 0.023 28.3 26.3 17 800-819 490-506 (582)
129 COG4942 Membrane-bound metallo 28.4 1.1E+03 0.024 28.3 29.2 75 444-521 172-246 (420)
130 PF06428 Sec2p: GDP/GTP exchan 27.9 1.5E+02 0.0032 28.8 5.7 68 119-189 2-69 (100)
131 PF07926 TPR_MLP1_2: TPR/MLP1/ 27.4 6.1E+02 0.013 25.0 16.8 96 443-541 17-112 (132)
132 PF14662 CCDC155: Coiled-coil 27.4 8.3E+02 0.018 26.6 23.0 172 428-619 17-188 (193)
133 KOG1962 B-cell receptor-associ 27.1 4.6E+02 0.0099 28.8 9.8 57 504-571 156-212 (216)
134 PTZ00266 NIMA-related protein 26.9 6.7E+02 0.015 33.1 12.8 8 132-139 129-136 (1021)
135 PF04012 PspA_IM30: PspA/IM30 26.8 7.5E+02 0.016 25.8 16.7 64 27-90 2-69 (221)
136 KOG4643 Uncharacterized coiled 25.8 1.7E+03 0.038 29.8 45.0 131 396-526 413-550 (1195)
137 TIGR01069 mutS2 MutS2 family p 25.5 1.5E+03 0.032 28.9 15.3 99 256-354 484-582 (771)
138 PF14662 CCDC155: Coiled-coil 25.3 9.1E+02 0.02 26.3 19.3 152 125-280 8-176 (193)
139 COG5185 HEC1 Protein involved 25.2 1.4E+03 0.03 28.3 16.4 105 389-511 293-401 (622)
140 PRK00409 recombination and DNA 25.2 1E+03 0.023 30.2 13.8 35 141-175 142-176 (782)
141 KOG3915 Transcription regulato 24.9 4.3E+02 0.0093 32.2 9.7 30 485-514 507-536 (641)
142 PF10234 Cluap1: Clusterin-ass 24.9 6E+02 0.013 28.7 10.5 84 414-500 157-244 (267)
143 KOG0804 Cytoplasmic Zn-finger 24.5 1.4E+03 0.029 28.1 14.8 75 389-466 373-447 (493)
144 TIGR01843 type_I_hlyD type I s 23.9 1E+03 0.022 26.4 19.1 46 202-247 133-178 (423)
145 COG1842 PspA Phage shock prote 23.6 9.9E+02 0.021 26.1 12.8 106 130-248 29-134 (225)
146 TIGR03017 EpsF chain length de 23.5 1.1E+03 0.025 26.8 19.4 125 146-271 160-298 (444)
147 PRK10884 SH3 domain-containing 22.8 8.8E+02 0.019 26.1 10.9 22 490-511 144-165 (206)
148 TIGR01005 eps_transp_fam exopo 22.4 1.6E+03 0.034 28.0 18.5 16 129-144 212-227 (754)
149 KOG4661 Hsp27-ERE-TATA-binding 22.3 1.1E+03 0.025 29.6 12.6 22 584-605 680-701 (940)
150 PF02841 GBP_C: Guanylate-bind 22.1 1.1E+03 0.024 26.1 15.5 9 126-134 41-49 (297)
151 PF11068 YlqD: YlqD protein; 21.9 8.5E+02 0.018 24.7 10.5 73 641-729 18-90 (131)
152 PRK15422 septal ring assembly 21.4 7.2E+02 0.016 23.7 9.4 57 483-543 6-62 (79)
153 KOG3859 Septins (P-loop GTPase 21.4 8.8E+02 0.019 28.3 10.9 52 396-450 350-401 (406)
154 PF06103 DUF948: Bacterial pro 21.0 3.3E+02 0.0073 24.8 6.5 53 124-176 25-77 (90)
155 PF14197 Cep57_CLD_2: Centroso 20.8 5.3E+02 0.011 23.5 7.5 57 682-740 2-58 (69)
156 PF15066 CAGE1: Cancer-associa 20.6 1.6E+03 0.035 27.6 21.5 85 476-564 406-490 (527)
157 TIGR02977 phageshock_pspA phag 20.4 1E+03 0.023 25.2 12.5 40 208-247 94-133 (219)
158 PF10186 Atg14: UV radiation r 20.4 1E+03 0.023 25.2 16.7 14 490-503 138-151 (302)
No 1
>PRK02224 chromosome segregation protein; Provisional
Probab=99.40 E-value=3.8e-06 Score=100.26 Aligned_cols=148 Identities=16% Similarity=0.214 Sum_probs=62.9
Q ss_pred HHHHhHHHHHHHHHhhhhhhh---hhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhHHHHhhhh
Q 002268 125 ECIASLEKAVHEIRAESAETK---VAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVARE 201 (944)
Q Consensus 125 qCVadLEKAL~emr~E~AeiK---~~sesKlaeA~aLv~~~eeKs~evE~Kl~aAea~~AEa~Rk~s~~erkL~evEaRE 201 (944)
+.+..++..+..+...+.... -....++...+.-+..++.+...+...+..+....+..+-+...+..++.+++...
T Consensus 251 ~~l~~l~~~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~~l~~~~~~~~~l~~~~~~l~~k~~el~~~l 330 (880)
T PRK02224 251 EELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREELEDRDEELRDRL 330 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555444444322 12233333444444444433333333333333334444444444555555555555
Q ss_pred hHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHhHHHHHHHHHHhhhhhhhhHhhhhhHHHHhHhHHHHHHHhhcHH
Q 002268 202 DDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVE 279 (944)
Q Consensus 202 ~~LrrerlSf~~e~ea~e~~~~~qre~L~eweK~Lqe~eerl~e~q~~lNqREe~~~e~~~~l~~kEkeLEe~~~kie 279 (944)
+.++.....+..+.+.+... +...++.+.+.+..+.....-+..-+..+......+..++.++++....+.
T Consensus 331 ~~~~~~l~~~~~~~e~~~~~-------~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~ 401 (880)
T PRK02224 331 EECRVAAQAHNEEAESLRED-------ADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFG 401 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55444444444333333332 333333333333334333333444444444444455555555555544444
No 2
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=99.11 E-value=0.00022 Score=92.21 Aligned_cols=367 Identities=21% Similarity=0.296 Sum_probs=210.6
Q ss_pred hHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHH---HhhhhhhhhhHHHHHhhhhhHHHhHHHHH----HhhhhHHHHh
Q 002268 342 HESALRVKQSEFEAELAIKYKLAEDEIEKKRRAW---ELRDLDLGQREESLLEREHDLEVQSRALV----DKEKDLVERS 414 (944)
Q Consensus 342 h~a~L~~Kk~eFElEle~krKs~eeEle~K~~~~---E~rEvel~h~Eekl~kREqaLe~k~~~lk----eKEkdl~~Ks 414 (944)
..+.++..++++..+++....-+++-......-. .++|.++..+-..+.+.....+.+...+. +.=.++.+-+
T Consensus 1119 ~r~K~ek~r~dL~~ele~l~~~Lee~~~~t~~q~e~~~k~e~e~~~l~~~leee~~~~e~~~~~lr~~~~~~~~el~~ql 1198 (1930)
T KOG0161|consen 1119 SRAKAERQRRDLSEELEELKEELEEQGGTTAAQLELNKKREAEVQKLRRDLEEETLDHEAQIEELRKKHADSLAELQEQL 1198 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777777777777766644333333 35566666655555555444444444443 2234455566
Q ss_pred hhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHH
Q 002268 415 HLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEEL 494 (944)
Q Consensus 415 k~LkEkEksL~aeEK~le~ek~~L~~ekEel~~lK~dlEK~~a~~e~q~~qi~ee~e~Lkite~Er~E~~~Lq~eLKeEI 494 (944)
..++.....+......++.+-..|..+-..+...+.++++..-.++ .++.+.+.++.-...-++++..--++|..|+
T Consensus 1199 e~l~~~k~~lekek~~lq~e~~~l~~ev~~~~~~k~~~e~~~k~~E---~~l~elq~k~~~~~~~~~~l~~q~~~l~~E~ 1275 (1930)
T KOG0161|consen 1199 EQLQKDKAKLEKEKSDLQREIADLAAELEQLSSEKKDLEKKDKKLE---AQLSELQLKLDEQERLRNDLTAKRSRLQNEN 1275 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 6666666666666666777777777777777777777777776666 4566667777777777777888888888888
Q ss_pred HHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhh
Q 002268 495 DVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDS 574 (944)
Q Consensus 495 d~~R~Qke~L~kEae~Lk~eK~kFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~ 574 (944)
..+=.|.++....+..+-..+..|+.+-+.+ +.++ ...+..+-++..-+. ++..+.+.++.+|.-+.+.
T Consensus 1276 ~~l~~~lee~e~~~~~~~r~~~~~~~qle~~---k~ql----e~e~r~k~~l~~~l~----~l~~e~~~l~e~leee~e~ 1344 (1930)
T KOG0161|consen 1276 EELSRQLEEAEAKLSALSRDKQALESQLEEL---KRQL----EEETREKSALENALR----QLEHELDLLREQLEEEQEA 1344 (1930)
T ss_pred HHHhhHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHH----HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888888888888877766 3333 333444444443332 4555677777777766666
Q ss_pred hhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhH-------------------------
Q 002268 575 LNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESS------------------------- 629 (944)
Q Consensus 575 L~~ekEsF~~~M~hE~s~~~ek~q~Erad~l~d~EmqkreLe~~i~~R~EE~E~~------------------------- 629 (944)
...-.-. ..+-.-+=+.|-.|++....+-+-+++.-|+.|...++.-++.+|-.
T Consensus 1345 ~~~l~r~-lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~ 1423 (1930)
T KOG0161|consen 1345 KNELERK-LSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDL 1423 (1930)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 5421100 11112233445555555555555555555555555555444444322
Q ss_pred ---------HHHHHHHHHH---HHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHH
Q 002268 630 ---------FREREKAFEE---EKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEEL 697 (944)
Q Consensus 630 ---------L~EREk~FEe---ek~~EL~~IN~lke~a~kE~E~v~lE~~rLe~Er~Ei~~~ke~le~e~~Em~kdIeeL 697 (944)
|...-+.|+. +-.+-...+....+.+.++..+...+..++...=.+.....+.+.++-..|...|.+|
T Consensus 1424 ~~~~~~~~~le~k~k~f~k~l~e~k~~~e~l~~Eld~aq~e~r~~~tel~kl~~~lee~~e~~e~l~renk~l~~ei~dl 1503 (1930)
T KOG0161|consen 1424 ERSRAAVAALEKKQKRFEKLLAEWKKKLEKLQAELDAAQRELRQLSTELQKLKNALEELLEQLEELRRENKNLSQEIEDL 1503 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222223321 1122233444555555556656556666655555555555555555555555555555
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHH
Q 002268 698 MVQRQKLEEQRQLLHADREEIQAESE 723 (944)
Q Consensus 698 ~~ls~KLk~QRE~~~~eRe~f~~~vE 723 (944)
..+-.-+-.-...+...+..+-..++
T Consensus 1504 ~~~~~e~~k~v~elek~~r~le~e~~ 1529 (1930)
T KOG0161|consen 1504 EEQKDEGGKRVHELEKEKRRLEQEKE 1529 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544444444444444444444433
No 3
>PRK02224 chromosome segregation protein; Provisional
Probab=98.92 E-value=0.00053 Score=82.36 Aligned_cols=92 Identities=13% Similarity=0.201 Sum_probs=63.5
Q ss_pred HHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchh
Q 002268 109 ARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHR 188 (944)
Q Consensus 109 aeKREEnLkKALgvEKqCVadLEKAL~emr~E~AeiK~~sesKlaeA~aLv~~~eeKs~evE~Kl~aAea~~AEa~Rk~s 188 (944)
...|.+=+.+.+|+. . +-.+...+...+..+..+.-...+++......+.. .....+...|..+...++++....+
T Consensus 148 p~~R~~ii~~l~~l~-~-~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~l~~~l~~~~~~l~el~~~i~ 223 (880)
T PRK02224 148 PSDRQDMIDDLLQLG-K-LEEYRERASDARLGVERVLSDQRGSLDQLKAQIEE--KEEKDLHERLNGLESELAELDEEIE 223 (880)
T ss_pred HHHHHHHHHHHhCCH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888899999983 3 35567778888888888888888888888777766 2244556667777777766666666
Q ss_pred HHhhhHHHHhhhhhHH
Q 002268 189 SAERKLQEVVAREDDL 204 (944)
Q Consensus 189 ~~erkL~evEaRE~~L 204 (944)
.+...+..+...-..+
T Consensus 224 ~~~~~~~~l~~~l~~l 239 (880)
T PRK02224 224 RYEEQREQARETRDEA 239 (880)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6555555554444444
No 4
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.87 E-value=0.0013 Score=83.33 Aligned_cols=75 Identities=8% Similarity=0.034 Sum_probs=51.1
Q ss_pred HhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhHHHHhhhhh
Q 002268 128 ASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVARED 202 (944)
Q Consensus 128 adLEKAL~emr~E~AeiK~~sesKlaeA~aLv~~~eeKs~evE~Kl~aAea~~AEa~Rk~s~~erkL~evEaRE~ 202 (944)
..|.+.++....+....+-..+..+..+..-+..+..+....+..+..+........+....+..+|..+..-++
T Consensus 397 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~q~~L~ei~~~l~~~eq~~~~~~e~~~~~~~~i~~~~~~l~~~~~~~~ 471 (1311)
T TIGR00606 397 TLVIERQEDEAKTAAQLCADLQSKERLKQEQADEIRDEKKGLGRTIELKKEILEKKQEELKFVIKELQQLEGSSD 471 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccChH
Confidence 446677777777777777777777777777777777777777777777766666666666666666665544444
No 5
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.87 E-value=0.0013 Score=83.28 Aligned_cols=77 Identities=12% Similarity=0.170 Sum_probs=40.9
Q ss_pred HHhhhhhhHHHHHHhcchhHHhhhHHHHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHhHHHHHHHHHHh
Q 002268 170 EAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQ 247 (944)
Q Consensus 170 E~Kl~aAea~~AEa~Rk~s~~erkL~evEaRE~~LrrerlSf~~e~ea~e~~~~~qre~L~eweK~Lqe~eerl~e~q 247 (944)
...+.+....+..++.....+++.+..++..-..++++.-....+..++...|. +-....+.+..|.+.+..|-..+
T Consensus 576 ~~~~~~~~~el~~~~~~~~~~~~el~~~e~~l~~~~~~l~~~~~eL~~~~~~i~-~~~~~~~~~~~L~~~~~~l~~~~ 652 (1311)
T TIGR00606 576 EDWLHSKSKEINQTRDRLAKLNKELASLEQNKNHINNELESKEEQLSSYEDKLF-DVCGSQDEESDLERLKEEIEKSS 652 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCchhHHHHHHHHHHHHHHHH
Confidence 444444444455555555555555555555555555555555555555555555 22244555555555555555555
No 6
>PRK03918 chromosome segregation protein; Provisional
Probab=98.49 E-value=0.0086 Score=71.93 Aligned_cols=42 Identities=7% Similarity=0.143 Sum_probs=23.2
Q ss_pred hhhhhhHHHHHHHHHhchHHHHHHhHHHHHHHHHHhhhhhhh
Q 002268 212 KADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNER 253 (944)
Q Consensus 212 ~~e~ea~e~~~~~qre~L~eweK~Lqe~eerl~e~q~~lNqR 253 (944)
..+....+..+..-...+.+|+..+...+..+...+.+.++.
T Consensus 244 ~~~~~~l~~~~~~l~~~i~~l~~el~~l~~~l~~l~~~~~~~ 285 (880)
T PRK03918 244 EKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKEL 285 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445554445556666666666666666655555443
No 7
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.35 E-value=0.019 Score=69.67 Aligned_cols=10 Identities=30% Similarity=0.448 Sum_probs=4.8
Q ss_pred HHHHHHHccC
Q 002268 27 IWKRLKEAGL 36 (944)
Q Consensus 27 iWkr~~eaG~ 36 (944)
+=..|..+|+
T Consensus 124 ~~~~l~~~~i 133 (1179)
T TIGR02168 124 IQDLFLDTGL 133 (1179)
T ss_pred HHHHHhccCC
Confidence 3344555554
No 8
>PRK03918 chromosome segregation protein; Provisional
Probab=98.22 E-value=0.033 Score=67.14 Aligned_cols=15 Identities=13% Similarity=0.085 Sum_probs=9.4
Q ss_pred CCCCcHHHHHHHHHc
Q 002268 20 SPLSDESIWKRLKEA 34 (944)
Q Consensus 20 ~~~~d~~iWkr~~ea 34 (944)
+++|-..+...+.=|
T Consensus 32 nG~GKStil~ai~~~ 46 (880)
T PRK03918 32 NGSGKSSILEAILVG 46 (880)
T ss_pred CCCCHHHHHHHHHHH
Confidence 566777776665543
No 9
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.22 E-value=0.036 Score=67.34 Aligned_cols=28 Identities=21% Similarity=0.330 Sum_probs=13.1
Q ss_pred hhhhhhHHHHHHHhhHHHHHHHHHHHHH
Q 002268 679 DRQRRDREWAELNNSIEELMVQRQKLEE 706 (944)
Q Consensus 679 ~ke~le~e~~Em~kdIeeL~~ls~KLk~ 706 (944)
.-..+..+..++...++.|...-.++.+
T Consensus 994 r~~~l~~q~~dL~~~~~~L~~~i~~i~~ 1021 (1179)
T TIGR02168 994 EYEELKERYDFLTAQKEDLTEAKETLEE 1021 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555555444444443
No 10
>PRK01156 chromosome segregation protein; Provisional
Probab=98.11 E-value=0.06 Score=65.61 Aligned_cols=56 Identities=14% Similarity=0.200 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHH
Q 002268 654 KAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQ 709 (944)
Q Consensus 654 ~a~kE~E~v~lE~~rLe~Er~Ei~~~ke~le~e~~Em~kdIeeL~~ls~KLk~QRE 709 (944)
....++..+..+..++..+...+..+...+.....++..+|..|..--.++.++..
T Consensus 671 ~~~~~~~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~~~~~~~ 726 (895)
T PRK01156 671 EITSRINDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLE 726 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 44556666666666777777777666666666666666666665544444444443
No 11
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.05 E-value=0.13 Score=67.77 Aligned_cols=282 Identities=22% Similarity=0.223 Sum_probs=147.1
Q ss_pred CChHHHhhhcHH--HHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHhh
Q 002268 36 LDEVSIKRRDKA--ALIAYIAKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKRE 113 (944)
Q Consensus 36 ~de~s~~rrD~~--aLia~IskLE~ElydYQynMGLLLiEkKEwtSK~eel~qa~~eae~~lKREqaahl~ALsEaeKRE 113 (944)
-+++-|..+|.. .|-..+.+-|+..=++--+|--++-|+-.++.....=+.-.+++++.+.+..+.-.-+=.++
T Consensus 835 ~~ee~~~~~~~e~~~l~~~l~~~e~~~~ele~~~~~~~~e~~~l~~~l~~e~~~~~~aee~~~~~~~~k~~le~~l---- 910 (1930)
T KOG0161|consen 835 KTEEEMRAKEEEIQKLKEELQKSESKRKELEEKLVKLLEEKNDLQEQLQAEKENLAEAEELLERLRAEKQELEKEL---- 910 (1930)
T ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 356666666543 34456666777777888888888888888888888778888888888888776544321111
Q ss_pred HhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhh-----------------hhhhhhhhHHHHHHHHHhhhhHHHHHhhhhh
Q 002268 114 ESLKKTLGVEKECIASLEKAVHEIRAESAETK-----------------VAADSKFAEARCMVENAQKKFAEAEAKLHAA 176 (944)
Q Consensus 114 EnLkKALgvEKqCVadLEKAL~emr~E~AeiK-----------------~~sesKlaeA~aLv~~~eeKs~evE~Kl~aA 176 (944)
..+..-+..+..=.++|++-.+++..++...+ .+.+.++.....=+.+ ..+..+||-..
T Consensus 911 ~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~----~~e~~~kL~ke 986 (1930)
T KOG0161|consen 911 KELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINS----LDENISKLSKE 986 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 11112222222222334444444444433332 2222222222222222 22333344333
Q ss_pred hHHHHHHhcchhHHhhhHHHHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHhHHHHHHHHHHhhhhhhhhHh
Q 002268 177 ESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDH 256 (944)
Q Consensus 177 ea~~AEa~Rk~s~~erkL~evEaRE~~LrrerlSf~~e~ea~e~~~~~qre~L~eweK~Lqe~eerl~e~q~~lNqREe~ 256 (944)
...+-+++| .+.-.|+.-+..-..|.+....+.+..+..+.++..++....+.+|.....+-.|...|..+..-...
T Consensus 987 kk~lEe~~~---~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~ 1063 (1930)
T KOG0161|consen 987 KKELEERIR---ELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQ 1063 (1930)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 333333322 22233444444445555555555555666666666666666666655555555555555555444445
Q ss_pred hhhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHHhhhHHHHHHHHHHHHHhHHhHHHHHHHHh
Q 002268 257 ILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLA 328 (944)
Q Consensus 257 ~~e~~~~l~~kEkeLEe~~~kie~~~~~Lk~ke~dl~~r~~~l~~rEe~~~~~~~~L~~KEkeLl~leEKL~ 328 (944)
..+-+..++.++-+|-.++.+++.....+..-.-.|..--+.+..-.+++..-+....+-|+....|...|.
T Consensus 1064 ~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele 1135 (1930)
T KOG0161|consen 1064 KEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELE 1135 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555666666666666666665554444443333333333444445555555555555555555555443
No 12
>PRK01156 chromosome segregation protein; Provisional
Probab=98.00 E-value=0.094 Score=63.97 Aligned_cols=55 Identities=15% Similarity=0.187 Sum_probs=32.8
Q ss_pred HHhhhhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhh
Q 002268 674 MEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKKL 728 (944)
Q Consensus 674 ~Ei~~~ke~le~e~~Em~kdIeeL~~ls~KLk~QRE~~~~eRe~f~~~vE~lK~c 728 (944)
..+......+..+...++.+|..|...-..++++-..+..+...+..++..++.+
T Consensus 677 ~~~~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~~~~l~eel~~~~~~~~~l~~~ 731 (895)
T PRK01156 677 NDIEDNLKKSRKALDDAKANRARLESTIEILRTRINELSDRINDINETLESMKKI 731 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555666666667777776666666666555555555665555555554
No 13
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=97.80 E-value=0.26 Score=62.75 Aligned_cols=207 Identities=14% Similarity=0.275 Sum_probs=146.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhH
Q 002268 479 EAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLR 558 (944)
Q Consensus 479 Er~E~~~Lq~eLKeEId~~R~Qke~L~kEae~Lk~eK~kFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK 558 (944)
++.+|..-...|.+++..+..+...+.+....+..+.......-..+...-+..+-+.+........+..-..+...++.
T Consensus 594 ~~pd~~~~ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 673 (1201)
T PF12128_consen 594 DVPDYAASEEELRERLEQAEDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIE 673 (1201)
T ss_pred CCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 46688889999999999999999999999888888888888888888887777777777777666666666667777777
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHH
Q 002268 559 QERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFE 638 (944)
Q Consensus 559 ~Ek~~~r~~~krelE~L~~ekEsF~~~M~hE~s~~~ek~q~Erad~l~d~EmqkreLe~~i~~R~EE~E~~L~EREk~FE 638 (944)
..+..-+..+...+..+..+-..|- .++..|....+........++--+..+++..+....+.+...+..+...|.
T Consensus 674 ~~~~~~~~~~~~~l~~l~~~l~~~~----~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~ 749 (1201)
T PF12128_consen 674 EAKEERKEQIEEQLNELEEELKQLK----QELEELLEELKEQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAK 749 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777776655553 455566666666666666566566666666666666666666665555554
Q ss_pred H-------HHHHHhhh--hhh-HHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHH
Q 002268 639 E-------EKMREFQQ--ISS-LKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAE 689 (944)
Q Consensus 639 e-------ek~~EL~~--IN~-lke~a~kE~E~v~lE~~rLe~Er~Ei~~~ke~le~e~~E 689 (944)
+ ....+|.. |+- .-..+..+++++.-++.+++.-|..|..=+.=+...|..
T Consensus 750 ~~~~~le~~~~~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~ 810 (1201)
T PF12128_consen 750 EQLKELEQQYNQELAGKGVDPERIQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDK 810 (1201)
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 4 33444432 222 445567788888888888888888887666655555543
No 14
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.71 E-value=0.34 Score=61.52 Aligned_cols=94 Identities=20% Similarity=0.256 Sum_probs=59.2
Q ss_pred HHHHHHHhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHH---HhhhhhhhhhHHHHHHHhhHhhhhhhhhHHHHHHhH
Q 002268 54 AKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEAAELL---QKHDRASHLSAIAEARKREESLKKTLGVEKECIASL 130 (944)
Q Consensus 54 skLE~ElydYQynMGLLLiEkKEwtSK~eel~qa~~eae~~---lKREqaahl~ALsEaeKREEnLkKALgvEKqCVadL 130 (944)
-.|..++..+++- +++.+-..+..+++++...+...+.- +......+.-.+...+.+-..++..+..-.+++..+
T Consensus 216 ~~l~~e~~~~~~~--~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~ 293 (1163)
T COG1196 216 QELKAELRELELA--LLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLEL 293 (1163)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666654 45566667777777777777776633 344444555556666666667777666667777776
Q ss_pred HHHHHHHHhhhhhhhhhhh
Q 002268 131 EKAVHEIRAESAETKVAAD 149 (944)
Q Consensus 131 EKAL~emr~E~AeiK~~se 149 (944)
...+.++-.+.+.++-..+
T Consensus 294 ~~~~~~le~~~~~~~~~~~ 312 (1163)
T COG1196 294 KEEIEELEGEISLLRERLE 312 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6677777666666654433
No 15
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.65 E-value=0.32 Score=59.73 Aligned_cols=16 Identities=25% Similarity=0.241 Sum_probs=10.2
Q ss_pred HHHHHHHHHccCChHH
Q 002268 25 ESIWKRLKEAGLDEVS 40 (944)
Q Consensus 25 ~~iWkr~~eaG~de~s 40 (944)
.++=..|...||+..+
T Consensus 120 ~~~~~~l~~~~~~~~~ 135 (1164)
T TIGR02169 120 SEIHDFLAAAGIYPEG 135 (1164)
T ss_pred HHHHHHHHHcCCCcCc
Confidence 3455568888876543
No 16
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.61 E-value=0.096 Score=63.53 Aligned_cols=217 Identities=24% Similarity=0.338 Sum_probs=128.5
Q ss_pred hhhhhhHH---HHHHHHhhhHHHHHHHHHHHHHhhhhh---hhhhH--HHHHhhhhhHHHhHHHHHHhhhhHH-HHhhhh
Q 002268 347 RVKQSEFE---AELAIKYKLAEDEIEKKRRAWELRDLD---LGQRE--ESLLEREHDLEVQSRALVDKEKDLV-ERSHLL 417 (944)
Q Consensus 347 ~~Kk~eFE---lEle~krKs~eeEle~K~~~~E~rEve---l~h~E--ekl~kREqaLe~k~~~lkeKEkdl~-~Ksk~L 417 (944)
|.|+-.|+ +||+..|+-+++.-...+..++++|.+ -+.+| ++=.|++-+|++++++--+.|..-+ .+-+.+
T Consensus 316 DKrkeNy~kGqaELerRRq~leeqqqreree~eqkEreE~ekkererqEqErk~qlElekqLerQReiE~qrEEerkkei 395 (1118)
T KOG1029|consen 316 DKRKENYEKGQAELERRRQALEEQQQREREEVEQKEREEEEKKERERQEQERKAQLELEKQLERQREIERQREEERKKEI 395 (1118)
T ss_pred hhhHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555665 688888888888777777766666543 22333 3334455567777777666654322 222333
Q ss_pred HHHHhhhHHHHHH--hHHH-------HHHHHHHHHHHHHHH---HHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHH
Q 002268 418 EEKENKLIAFEKE--ADLK-------KSLLQKEKEEVNIIK---SDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSV 485 (944)
Q Consensus 418 kEkEksL~aeEK~--le~e-------k~~L~~ekEel~~lK---~dlEK~~a~~e~q~~qi~ee~e~Lkite~Er~E~~~ 485 (944)
..+|-.-.-.||. ++-+ .+|...+.+.|-.++ ..++--+..|..+++++..-.....+-.
T Consensus 396 e~rEaar~ElEkqRqlewErar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~-------- 467 (1118)
T KOG1029|consen 396 ERREAAREELEKQRQLEWERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDI-------- 467 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheecc--------
Confidence 3333222222221 1111 122222333333332 3344444455555555554444333222
Q ss_pred HHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhh-------------hh
Q 002268 486 LEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSL-------------KD 552 (944)
Q Consensus 486 Lq~eLKeEId~~R~Qke~L~kEae~Lk~eK~kFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~-------------~~ 552 (944)
..-|++|+.++-|.+..+.|.+.|+++.. +++.-+.+++-||..|..-+ ++
T Consensus 468 --tt~kt~ie~~~~q~e~~isei~qlqarik--------------E~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s 531 (1118)
T KOG1029|consen 468 --TTQKTEIEEVTKQRELMISEIDQLQARIK--------------ELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKS 531 (1118)
T ss_pred --chHHHHHHHhhhHHHHHHHHHHHHHHHHH--------------HHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHH
Confidence 45689999999999999999999998754 34444445555555444322 56
Q ss_pred hhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhh
Q 002268 553 ERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMV 587 (944)
Q Consensus 553 E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~M~ 587 (944)
+-+.+...|+.++.+++-.++.|+-+.+|=.+.|.
T Consensus 532 ~L~aa~~~ke~irq~ikdqldelskE~esk~~eid 566 (1118)
T KOG1029|consen 532 ELEAARRKKELIRQAIKDQLDELSKETESKLNEID 566 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 77788889999999999999999999888777776
No 17
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.50 E-value=0.5 Score=58.08 Aligned_cols=32 Identities=28% Similarity=0.453 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh
Q 002268 695 EELMVQRQKLEEQRQLLHADREEIQAESERLK 726 (944)
Q Consensus 695 eeL~~ls~KLk~QRE~~~~eRe~f~~~vE~lK 726 (944)
+++...-..|.+|++.+...+..|...|+.++
T Consensus 982 ~~~~~~~~~l~~q~~dl~~~~~~l~~~i~~l~ 1013 (1164)
T TIGR02169 982 EEVLKRLDELKEKRAKLEEERKAILERIEEYE 1013 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344445566666666666666666666665
No 18
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.27 E-value=0.72 Score=54.83 Aligned_cols=51 Identities=20% Similarity=0.325 Sum_probs=42.3
Q ss_pred hHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhhHHhHHh
Q 002268 684 DREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLKIAVD 736 (944)
Q Consensus 684 e~e~~Em~kdIeeL~~ls~KLk~QRE~~~~eRe~f~~~vE~lK~ckncg~~~~ 736 (944)
.=+.+|-++.|.+|+.-=+-+++-.|+|..++-.++..|+.|.. .+|.+.+
T Consensus 409 ~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~Le~--r~~~~~~ 459 (546)
T PF07888_consen 409 RVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIERLEQ--RLDKVAD 459 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhhh
Confidence 34789999999999999899999999999999999999998863 3444443
No 19
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=97.07 E-value=1.4 Score=54.53 Aligned_cols=87 Identities=17% Similarity=0.190 Sum_probs=39.5
Q ss_pred HHHHHHhcchhHHhhhHHHHhhhhhHHHHHHhHhhh------hhhhHHHHHHHHHhchHHHHHHhHHHHHHHHHHhhhhh
Q 002268 178 SLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKA------DCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLN 251 (944)
Q Consensus 178 a~~AEa~Rk~s~~erkL~evEaRE~~LrrerlSf~~------e~ea~e~~~~~qre~L~eweK~Lqe~eerl~e~q~~lN 251 (944)
..+++..+....+..+++.++.....+....--+.. +.+.....+....+.+..++.++......+.+.....|
T Consensus 274 ~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 353 (908)
T COG0419 274 EELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKN 353 (908)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555544443333332 23333333344444444444444444444444444444
Q ss_pred hhhHhhhhhHHHH
Q 002268 252 EREDHILSKLQEL 264 (944)
Q Consensus 252 qREe~~~e~~~~l 264 (944)
+...-+.++...+
T Consensus 354 ~~~~~~~~~~~~l 366 (908)
T COG0419 354 ELAKLLEERLKEL 366 (908)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444443333
No 20
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=97.07 E-value=0.00013 Score=88.71 Aligned_cols=509 Identities=21% Similarity=0.264 Sum_probs=0.0
Q ss_pred HHHHHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHH-------HHhhhhhhH
Q 002268 106 IAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEA-------EAKLHAAES 178 (944)
Q Consensus 106 LsEaeKREEnLkKALgvEKqCVadLEKAL~emr~E~AeiK~~sesKlaeA~aLv~~~eeKs~ev-------E~Kl~aAea 178 (944)
|-+..-|=+.|.--|..|++--+--||+-++|..|..+++---+.......+.+.-.-++-.++ |.--.+-++
T Consensus 41 ~kelq~~i~el~eeLe~Er~~R~kaek~r~dL~~ELe~l~~~Lee~~~~t~aq~E~~kkrE~El~~Lrr~LEe~~~~~e~ 120 (859)
T PF01576_consen 41 IKELQARIEELEEELESERQARAKAEKQRRDLSEELEELKERLEEAGGATQAQIELNKKREAELAKLRRDLEEANLQHEA 120 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455556666666666666777777777777766444444333333333322222221 222234456
Q ss_pred HHHHHhcchhHHhhhH----HHHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHhHHHHHHHHHHhhhhhhhh
Q 002268 179 LQAEANRYHRSAERKL----QEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNERE 254 (944)
Q Consensus 179 ~~AEa~Rk~s~~erkL----~evEaRE~~LrrerlSf~~e~ea~e~~~~~qre~L~eweK~Lqe~eerl~e~q~~lNqRE 254 (944)
.+++.-++|+.+--.| ..+.---..|-+.+-.|..+......++..-=.....-++.....+.-|.+.+.-+..-+
T Consensus 121 ~~~~lrkkh~~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~e 200 (859)
T PF01576_consen 121 TLAELRKKHQDAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESE 200 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHH
Confidence 6677777775543222 222222233334444444444444444433333334445666666666666666666666
Q ss_pred HhhhhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHHhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhHH
Q 002268 255 DHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNE 334 (944)
Q Consensus 255 e~~~e~~~~l~~kEkeLEe~~~kie~~~~~Lk~ke~dl~~r~~~l~~rEe~~~~~~~~L~~KEkeLl~leEKL~aRE~~e 334 (944)
..+++.......++.++.++...++.. ...+..|+- ....-+..|..+...|..-
T Consensus 201 r~~~el~~~k~kL~~E~~eL~~qLee~-----------e~~~~~l~r----------~k~~L~~qLeelk~~leeE---- 255 (859)
T PF01576_consen 201 RQRNELTEQKAKLQSENSELTRQLEEA-----------ESQLSQLQR----------EKSSLESQLEELKRQLEEE---- 255 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHH----------HHHHHHHHHHhhHHHHHhH----
Confidence 666655555555555555555444333 222222211 0011122233333222211
Q ss_pred HHHHHHHhHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHH---HHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHH
Q 002268 335 IQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRA---WELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLV 411 (944)
Q Consensus 335 IQkLldeh~a~L~~Kk~eFElEle~krKs~eeEle~K~~~---~E~rEvel~h~Eekl~kREqaLe~k~~~lkeKEkdl~ 411 (944)
+ -.+..|..+.+..+.+++..+..++++-.+|... +..-..+|..+-.+ -+.......+.+.+--+.|.
T Consensus 256 t-----r~k~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K---~e~e~~~~~EelEeaKKkL~ 327 (859)
T PF01576_consen 256 T-----RAKQALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKK---YEEEAEQRTEELEEAKKKLE 327 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred h-----hhhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHH---HHHHhhhhHHHHHHHHHHHH
Confidence 0 1345667778888888888888888887776542 22233333333222 23334444555666667777
Q ss_pred HHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhh---hhHHHHHHHHHHHhhhhhhhhhhhhHHHHHH
Q 002268 412 ERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLS---SLDEKKKQVNCAKDKLEAMKSEAGELSVLEI 488 (944)
Q Consensus 412 ~Ksk~LkEkEksL~aeEK~le~ek~~L~~ekEel~~lK~dlEK~~a---~~e~q~~qi~ee~e~Lkite~Er~E~~~Lq~ 488 (944)
.++..+.+.-....+.--.|+.-+..|+.+-+.+.. +|++..+ .++....+++.....++.- ..
T Consensus 328 ~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~---eLe~~~~~~~~LeKKqr~fDk~l~e~k~~----------~~ 394 (859)
T PF01576_consen 328 RKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTS---ELEKAQAAAAELEKKQRKFDKQLAEWKAK----------VE 394 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHH----------HH
Confidence 777777777777777777777778888877666554 4554443 5566666665544433322 13
Q ss_pred HHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHH
Q 002268 489 KLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQH 568 (944)
Q Consensus 489 eLKeEId~~R~Qke~L~kEae~Lk~eK~kFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~ 568 (944)
.+..+.|..-.....+..++-.|+.+.......++.+.-....|+.|+.++..+--...+-++ +-++.+.....-.+.+
T Consensus 395 ~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~-eLek~kr~LE~e~~El 473 (859)
T PF01576_consen 395 ELQAERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVH-ELEKAKRRLEQEKEEL 473 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchH-HHHHHHHHHHHHHHHH
Confidence 456667777777777788888888887777777777777777777777777655443333322 2222222111111111
Q ss_pred HhhhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhh
Q 002268 569 KRDVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQI 648 (944)
Q Consensus 569 krelE~L~~ekEsF~~~M~hE~s~~~ek~q~Erad~l~d~EmqkreLe~~i~~R~EE~E~~L~EREk~FEeek~~EL~~I 648 (944)
+..++-+ .+-+...|..+.-|+..|+.-+-++++.|.+|+..|+.-+..=.-.|
T Consensus 474 ~~~leE~--------------------------E~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE~E~~Rr~~qr~l 527 (859)
T PF01576_consen 474 QEQLEEA--------------------------EDALEAEEQKKLRLQVELQQLRQEIERELQEKEEEFEETRRNHQRQL 527 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhHHHH
Confidence 1112111 12223455566778888888899999999999999998776544444
Q ss_pred hhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHHH
Q 002268 649 SSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELM 698 (944)
Q Consensus 649 N~lke~a~kE~E~v~lE~~rLe~Er~Ei~~~ke~le~e~~Em~kdIeeL~ 698 (944)
-+|..-+..|. +.|.++.-.|++++.+..+|.-.++..+
T Consensus 528 ~~le~~LE~E~-----------k~r~~~~r~kkKLE~~l~eLe~~ld~~n 566 (859)
T PF01576_consen 528 ESLEAELEEER-----------KERAEALREKKKLESDLNELEIQLDHAN 566 (859)
T ss_dssp --------------------------------------------------
T ss_pred HHHHhHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44433332222 2344445555555555555444444333
No 21
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=96.97 E-value=1.7 Score=53.72 Aligned_cols=322 Identities=19% Similarity=0.272 Sum_probs=190.5
Q ss_pred HHHHhhhHHHHHHHHHHHHHhHHhHHHHHHHHhh-----hhh---HHHHHHHHHhHHHHhhhhhhH-------HHHHHHH
Q 002268 296 LVSLLKREEAVIEREASLQKKEQKLLVSQETLAS-----KES---NEIQKIIANHESALRVKQSEF-------EAELAIK 360 (944)
Q Consensus 296 ~~~l~~rEe~~~~~~~~L~~KEkeLl~leEKL~a-----RE~---~eIQkLldeh~a~L~~Kk~eF-------ElEle~k 360 (944)
...+.-.|-.+..++..|+.+|++...+-+.|-- +.. ..+|++|+.- +++...| |.|+...
T Consensus 182 ~~~~~~~e~~~~~le~lle~~e~~~~~~r~~l~~~~~~~~~~a~t~alq~~ie~K----d~ki~~lEr~l~~le~Ei~~L 257 (775)
T PF10174_consen 182 LRRIREAEARIMRLESLLERKEKEHMEAREQLHRRLQMERDDAETEALQTVIEEK----DTKIASLERMLRDLEDEIYRL 257 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhhcCCCchhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 3344455666777788888888888666443322 222 3468887764 3444454 5555544
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHH
Q 002268 361 YKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQK 440 (944)
Q Consensus 361 rKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkeKEkdl~~Ksk~LkEkEksL~aeEK~le~ek~~L~~ 440 (944)
+..++---. -+.-..+++++........|-. ++.-.=.|..+.-++.+...-|.-....-.....-|+.=+..|-+
T Consensus 258 ~~~~~~~~~--~r~~~~k~le~~~s~~~~mK~k--~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ 333 (775)
T PF10174_consen 258 RSRGELSEA--DRDRLDKQLEVYKSHSLAMKSK--MDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRA 333 (775)
T ss_pred Hhccccccc--chHHHHHHHHHHHhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 443321111 1222233344444433333321 333344455666666666666666666666666777777888888
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHH
Q 002268 441 EKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEA 520 (944)
Q Consensus 441 ekEel~~lK~dlEK~~a~~e~q~~qi~ee~e~Lkite~Er~E~~~Lq~eLKeEId~~R~Qke~L~kEae~Lk~eK~kFE~ 520 (944)
--.....|.+|++-++..++..-.++...+..+..+++|.+-+..==.+|+..+|.+=..-..|.+-+|.|...-..=+
T Consensus 334 ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd- 412 (775)
T PF10174_consen 334 KEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKD- 412 (775)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 8888899999999999999999999999999999999887665544455666666666666666666555543322111
Q ss_pred HHhhhHHHHHHHH------------HHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhh
Q 002268 521 EWEMIDEKREELR------------KEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVH 588 (944)
Q Consensus 521 EWE~LDEKR~el~------------KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~M~h 588 (944)
-.|++-++.|. -.++.-..+++.+..-+...+++.-.++..--+.|++++..+...-++|-..+ |
T Consensus 413 --~ql~~~k~Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e~e~~Eele~~~~e~~~lk~~~~~LQ~eL-s 489 (775)
T PF10174_consen 413 --RQLDEEKERLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAEKERQEELETYQKELKELKAKLESLQKEL-S 489 (775)
T ss_pred --HHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-H
Confidence 11222222222 23333333444444444444444444444444667777777777777777655 6
Q ss_pred hhhhHHHHHHHHHHHhhhhhHhhhhh---hHHHHHHHHHHHHhH
Q 002268 589 EHSEWFTKIQQERADFLLGIEMQKRD---LENCIEKRREELESS 629 (944)
Q Consensus 589 E~s~~~ek~q~Erad~l~d~Emqkre---Le~~i~~R~EE~E~~ 629 (944)
|+..-+.-++.+-+.+.-+.+-+..+ |++.+++..+++++-
T Consensus 490 Ek~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl 533 (775)
T PF10174_consen 490 EKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKL 533 (775)
T ss_pred HHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHH
Confidence 77777777777777776666555544 446666666665543
No 22
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.82 E-value=2.7 Score=53.67 Aligned_cols=190 Identities=22% Similarity=0.283 Sum_probs=103.9
Q ss_pred HHHHHHHHHccCCh--------------HHHhhhcHHHHHHHH----------HHHHHHHhhhhhhhhhhhhhhhhhhhh
Q 002268 25 ESIWKRLKEAGLDE--------------VSIKRRDKAALIAYI----------AKLETEIFEHQHHMGLLILEKKELASK 80 (944)
Q Consensus 25 ~~iWkr~~eaG~de--------------~s~~rrD~~aLia~I----------skLE~ElydYQynMGLLLiEkKEwtSK 80 (944)
.||=.-|...|++. .+++..++..|++-+ .+.+..|-.=+=|+.-+=.-..+...+
T Consensus 122 ~dI~~l~~~~gi~~~~~~iV~QG~V~~i~~~kp~err~iiEEaaGv~~y~~r~~ea~~~L~~~~~nl~~~~~~~~el~~~ 201 (1163)
T COG1196 122 KDIQDLLADSGIGKESYSIVSQGKVEEIINAKPEERRKLIEEAAGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQ 201 (1163)
T ss_pred HHHHHHHHhcCCCCCCCceeecccHHHHHcCCHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888743 345777777777644 355677777888888888888899999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhh----HH---HHHHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhh
Q 002268 81 YEQIKASAEAAELLQKHDRASHLS----AI---AEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFA 153 (944)
Q Consensus 81 ~eel~qa~~eae~~lKREqaahl~----AL---sEaeKREEnLkKALgvEKqCVadLEKAL~emr~E~AeiK~~sesKla 153 (944)
++.|+.....|+..+.-...-... .+ ......-+.+..+++-=..=+.++...+.+.-.++ .....++.
T Consensus 202 l~~L~~q~~~a~~y~~l~~e~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i----~~~~~~~~ 277 (1163)
T COG1196 202 LEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEI----EELKSELE 277 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 999998888888766543322222 22 22222233333333322222222333333222222 22334555
Q ss_pred HHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhHHHHhhhhhHHHHHHhHhhhhhhhH
Q 002268 154 EARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEK 218 (944)
Q Consensus 154 eA~aLv~~~eeKs~evE~Kl~aAea~~AEa~Rk~s~~erkL~evEaRE~~LrrerlSf~~e~ea~ 218 (944)
+...-+...+.....+-..+...+...+-+..........+.+...+...+.-.+..+.++....
T Consensus 278 e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 342 (1163)
T COG1196 278 ELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEER 342 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555455555555555555555555555555555554544444444444444
No 23
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.59 E-value=1.1 Score=47.45 Aligned_cols=59 Identities=20% Similarity=0.232 Sum_probs=28.9
Q ss_pred HHhHHHHHHHHHHhhhhhhhhHhhhhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhh
Q 002268 234 KILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNL 292 (944)
Q Consensus 234 K~Lqe~eerl~e~q~~lNqREe~~~e~~~~l~~kEkeLEe~~~kie~~~~~Lk~ke~dl 292 (944)
-++.+.+.+|-+....+..-+.+.-+..+.|...+.+|+.+...++..-..+..-+..|
T Consensus 92 eri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el 150 (237)
T PF00261_consen 92 ERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEEL 150 (237)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHH
Confidence 33444444444444445555555555555555555555555555544444444444333
No 24
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=96.47 E-value=3.8 Score=50.94 Aligned_cols=62 Identities=19% Similarity=0.231 Sum_probs=27.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 002268 477 KSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERV 539 (944)
Q Consensus 477 e~Er~E~~~Lq~eLKeEId~~R~Qke~L~kEae~Lk~eK~kFE~EWE~LDEKR~el~KEa~~I 539 (944)
.++...+..+..+|+.-.+.++.-- ....+.++++..-..+..-|..|...-..++......
T Consensus 558 ~~e~~~le~~~~~l~~~~~~~~~~~-~~~~~l~~~r~~~~~~~~~~~~l~~~~~~l~~~~~~~ 619 (908)
T COG0419 558 KEELRQLEDRLQELKELLEELRLLR-TRKEELEELRERLKELKKKLKELEERLSQLEELLQSL 619 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333344444444444444444333 2223444444334444444555555555554444443
No 25
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.39 E-value=1.7 Score=46.02 Aligned_cols=222 Identities=21% Similarity=0.258 Sum_probs=122.9
Q ss_pred hhHHHHHHhcchhHHhhhHHHHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHhHHHHHHHHHHhhhhhhhhH
Q 002268 176 AESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNERED 255 (944)
Q Consensus 176 Aea~~AEa~Rk~s~~erkL~evEaRE~~LrrerlSf~~e~ea~e~~~~~qre~L~eweK~Lqe~eerl~e~q~~lNqREe 255 (944)
|......+..+...+..++..+++.-..|.|..-.+..+.+ .--+.|..-..+|...+.++-+..+.+..=+.
T Consensus 13 ~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le-------~~eerL~~~~~kL~~~e~~~de~er~~k~lE~ 85 (237)
T PF00261_consen 13 AEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELE-------RAEERLEEATEKLEEAEKRADESERARKVLEN 85 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH-------HHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333333333344444555555555555555544444433 33345566666777777777777777777777
Q ss_pred hhhhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHHhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhHHH
Q 002268 256 HILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEI 335 (944)
Q Consensus 256 ~~~e~~~~l~~kEkeLEe~~~kie~~~~~Lk~ke~dl~~r~~~l~~rEe~~~~~~~~L~~KEkeLl~leEKL~aRE~~eI 335 (944)
+....+..+..++..|.+++...+..-..+.+-...|...-..|.--|.-++..++.+..-|.+|..+-..|-+=|-.+.
T Consensus 86 r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~ 165 (237)
T PF00261_consen 86 REQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEE 165 (237)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhh
Confidence 77777777777777777777777766665555555555555555555555555555555555555555555543332211
Q ss_pred HHHHHHhHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhh
Q 002268 336 QKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSH 415 (944)
Q Consensus 336 QkLldeh~a~L~~Kk~eFElEle~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkeKEkdl~~Ksk 415 (944)
+ -.+=+-.++.+-+.|..-|..=..-++--|..+...|..|..-+-.|..--.+.+....+|+.-+.
T Consensus 166 ~-------------~~~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL~~~k~~~~~~~~eld~~l~ 232 (237)
T PF00261_consen 166 K-------------ASEREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDELEKEKEKYKKVQEELDQTLN 232 (237)
T ss_dssp H-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h-------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 111122222333344444444444444455556666666666666666666666666666665554
Q ss_pred hh
Q 002268 416 LL 417 (944)
Q Consensus 416 ~L 417 (944)
.|
T Consensus 233 el 234 (237)
T PF00261_consen 233 EL 234 (237)
T ss_dssp HC
T ss_pred Hh
Confidence 43
No 26
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.36 E-value=5 Score=51.09 Aligned_cols=107 Identities=25% Similarity=0.258 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhh-hhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHH
Q 002268 442 KEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKL-EAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEA 520 (944)
Q Consensus 442 kEel~~lK~dlEK~~a~~e~q~~qi~ee~e~L-kite~Er~E~~~Lq~eLKeEId~~R~Qke~L~kEae~Lk~eK~kFE~ 520 (944)
++++...-..+.+.+.....-.++|....+.+ .-+..++.+..---..|++||+++..|...|-.|.++++..-..=+.
T Consensus 357 ~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~e 436 (1074)
T KOG0250|consen 357 KEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEE 436 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 33333344444444444444444454444444 44555555554444556666666666666666666666666665566
Q ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 002268 521 EWEMIDEKREELRKEAERVAVERVVVSK 548 (944)
Q Consensus 521 EWE~LDEKR~el~KEa~~I~eEre~lek 548 (944)
|-+.+..+...|.+-...+..+=..+.+
T Consensus 437 e~~~i~~~i~~l~k~i~~~~~~l~~lk~ 464 (1074)
T KOG0250|consen 437 EKEHIEGEILQLRKKIENISEELKDLKK 464 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666666666666666666544444333
No 27
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.11 E-value=4.6 Score=48.32 Aligned_cols=96 Identities=18% Similarity=0.188 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 002268 488 IKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQ 567 (944)
Q Consensus 488 ~eLKeEId~~R~Qke~L~kEae~Lk~eK~kFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~ 567 (944)
+..-+|...+.+..+..-.++.+|+.++.+-+. .|+|+|.+=++=...|+.++..= +++-+|..|.-.|..++=.-
T Consensus 353 ~q~~qEk~~l~~~~e~~k~~ie~L~~el~~~e~---~lqEer~E~qkL~~ql~ke~D~n-~vqlsE~~rel~Elks~lrv 428 (546)
T PF07888_consen 353 SQWAQEKQALQHSAEADKDEIEKLSRELQMLEE---HLQEERMERQKLEKQLGKEKDCN-RVQLSENRRELQELKSSLRV 428 (546)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHHHHHHHH
Confidence 455555555554444444567788888887776 68899888777777776655433 56778888887776665555
Q ss_pred HHhhhhhhhhhHHHHHHhhh
Q 002268 568 HKRDVDSLNREREEFMNKMV 587 (944)
Q Consensus 568 ~krelE~L~~ekEsF~~~M~ 587 (944)
.+.+-|.|..++-..|.-|.
T Consensus 429 ~qkEKEql~~EkQeL~~yi~ 448 (546)
T PF07888_consen 429 AQKEKEQLQEEKQELLEYIE 448 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555444443
No 28
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.07 E-value=4.6 Score=51.10 Aligned_cols=237 Identities=17% Similarity=0.221 Sum_probs=150.5
Q ss_pred hhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhHHHHhhhhhHHHHH-HhHhhhhhhhHHHHHHHHHhchH
Q 002268 152 FAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRR-IASFKADCEEKEREIIRERQSLS 230 (944)
Q Consensus 152 laeA~aLv~~~eeKs~evE~Kl~aAea~~AEa~Rk~s~~erkL~evEaRE~~Lrre-rlSf~~e~ea~e~~~~~qre~L~ 230 (944)
|.+|.-=+..++.....+|.-|..-++.......-.++++.+++++--=+..++.. -.-...+.+.+..++..-.+.+.
T Consensus 679 l~~~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ik 758 (1174)
T KOG0933|consen 679 LKQAQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQIK 758 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555666666777777777777777777888888888875444443322 22334788888888888888888
Q ss_pred HHHHHhHHHHHHHHHHhhhhhhhhHhhhhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHHhhhHHHHHHHH
Q 002268 231 DRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIERE 310 (944)
Q Consensus 231 eweK~Lqe~eerl~e~q~~lNqREe~~~e~~~~l~~kEkeLEe~~~kie~~~~~Lk~ke~dl~~r~~~l~~rEe~~~~~~ 310 (944)
+-.+.+...++-+......++ ++-..+.+.++-+++++..++..++.....++..+.....-......-+.++...+
T Consensus 759 e~~~~~k~~~~~i~~lE~~~~---d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k 835 (1174)
T KOG0933|consen 759 EKERALKKCEDKISTLEKKMK---DAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLK 835 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHh---HhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888877776655 34456677777788888888888888888888888777776666666666666666
Q ss_pred HHHHHhHHhHHHHHHHHhhhhhHHHHHHHHHhHHHHhhhhhhHHHH-HHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHH
Q 002268 311 ASLQKKEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAE-LAIKYKLAEDEIEKKRRAWELRDLDLGQREESL 389 (944)
Q Consensus 311 ~~L~~KEkeLl~leEKL~aRE~~eIQkLldeh~a~L~~Kk~eFElE-le~krKs~eeEle~K~~~~E~rEvel~h~Eekl 389 (944)
..|.-.+..+..|...+..=+ ..|-++-.+|. +..-++. +-.+.+-.+.+|..=...|+.-..+.+..+..+
T Consensus 836 ~~l~~~~~~~~~l~~e~~~l~-~kv~~~~~~~~------~~~~el~~~k~k~~~~dt~i~~~~~~~e~~~~e~~~~~l~~ 908 (1174)
T KOG0933|consen 836 QQLEQLEKQISSLKSELGNLE-AKVDKVEKDVK------KAQAELKDQKAKQRDIDTEISGLLTSQEKCLSEKSDGELER 908 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHhHHhHHH------HHHHHHHHHHHHHHhhhHHHhhhhhHHHHHHHHhhcccchH
Confidence 666666666665555443321 11111111111 1111111 122444556666666666666666666666666
Q ss_pred HhhhhhHHH
Q 002268 390 LEREHDLEV 398 (944)
Q Consensus 390 ~kREqaLe~ 398 (944)
-+.+|.+.+
T Consensus 909 kkle~e~~~ 917 (1174)
T KOG0933|consen 909 KKLEHEVTK 917 (1174)
T ss_pred HHHHhHHHH
Confidence 666665544
No 29
>PRK12704 phosphodiesterase; Provisional
Probab=95.98 E-value=0.32 Score=57.20 Aligned_cols=77 Identities=25% Similarity=0.325 Sum_probs=47.1
Q ss_pred hhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHH
Q 002268 350 QSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEK 429 (944)
Q Consensus 350 k~eFElEle~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkeKEkdl~~Ksk~LkEkEksL~aeEK 429 (944)
+.+++.|+...|..++.++..+ +.++..+|..+.+|+..|+.+.+.|..++..|..+-+.|..+++.|...++
T Consensus 59 ~leaeeE~~~~R~Ele~e~~~~-------e~~L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re~~Le~re~eLe~~~~ 131 (520)
T PRK12704 59 LLEAKEEIHKLRNEFEKELRER-------RNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEE 131 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555554433 444566666677777777777777777777777776666666666665555
Q ss_pred HhHH
Q 002268 430 EADL 433 (944)
Q Consensus 430 ~le~ 433 (944)
+++.
T Consensus 132 ~~~~ 135 (520)
T PRK12704 132 ELEE 135 (520)
T ss_pred HHHH
Confidence 5543
No 30
>PRK11637 AmiB activator; Provisional
Probab=95.88 E-value=3.6 Score=46.82 Aligned_cols=44 Identities=7% Similarity=0.070 Sum_probs=19.7
Q ss_pred hhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhHHHHHHHHHhH
Q 002268 300 LKREEAVIEREASLQKKEQKLLVSQETLASKESNEIQKIIANHE 343 (944)
Q Consensus 300 ~~rEe~~~~~~~~L~~KEkeLl~leEKL~aRE~~eIQkLldeh~ 343 (944)
...+.++......+...+.+|..++.+|......-=+.+-.-+.
T Consensus 92 ~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 92 RETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444555555555555554444333333333333
No 31
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=95.49 E-value=4.5 Score=43.57 Aligned_cols=232 Identities=21% Similarity=0.340 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---hhhhhhhhhHHHHHHHH
Q 002268 489 KLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSK---SLKDERDSLRQERDAMR 565 (944)
Q Consensus 489 eLKeEId~~R~Qke~L~kEae~Lk~eK~kFE~EWE~LDEKR~el~KEa~~I~eEre~lek---~~~~E~erLK~Ek~~~r 565 (944)
.|...|+.+-.++--|..+.+.|+.+...|..-|+..-..+..++.+...+...-..... .+.+.-..|+.+..-++
T Consensus 58 ~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~ 137 (312)
T PF00038_consen 58 ELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLK 137 (312)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHH
Confidence 445677777777777777788888888888888887777777776665555433332222 23456677888888888
Q ss_pred HHHHhhhhhhhhhHH-HHHHhhhhh-hhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 002268 566 DQHKRDVDSLNRERE-EFMNKMVHE-HSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMR 643 (944)
Q Consensus 566 ~~~krelE~L~~ekE-sF~~~M~hE-~s~~~ek~q~Erad~l~d~EmqkreLe~~i~~R~EE~E~~L~EREk~FEeek~~ 643 (944)
..|..++..|...-. .+-..|..- ...+..-+..=| ...+..+.+-+.+++..++-+-......-..
T Consensus 138 ~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~eiR-----------~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~ 206 (312)
T PF00038_consen 138 QNHEEEIEELREQIQSSVTVEVDQFRSSDLSAALREIR-----------AQYEEIAQKNREELEEWYQSKLEELRQQSEK 206 (312)
T ss_dssp HHHHHHHHTTSTT----------------HHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhccccccceeecccccccchhhhhhHH-----------HHHHHHHhhhhhhhhhhcccccccccccccc
Confidence 888888888876553 222222210 122222233333 3344444455555555555444333333332
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHhhHHHHHHH
Q 002268 644 EFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEE-LMVQRQKLEEQRQLLHADREEIQAES 722 (944)
Q Consensus 644 EL~~IN~lke~a~kE~E~v~lE~~rLe~Er~Ei~~~ke~le~e~~Em~kdIee-L~~ls~KLk~QRE~~~~eRe~f~~~v 722 (944)
--..+.+ +..|+-.++..+..|..+-.-+......|+.+..++....+. +......+...-..+..=|..+-.++
T Consensus 207 ~~~~~~~----~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~ 282 (312)
T PF00038_consen 207 SSEELES----AKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQL 282 (312)
T ss_dssp HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccch----hHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHH
Confidence 2222222 233334444444444444444444444555554444433322 22223333333334444455555555
Q ss_pred HHhhhhhhHHhHH
Q 002268 723 ERLKKLEDLKIAV 735 (944)
Q Consensus 723 E~lK~ckncg~~~ 735 (944)
..+..+-|-+...
T Consensus 283 ~ey~~Ll~~K~~L 295 (312)
T PF00038_consen 283 REYQELLDVKLAL 295 (312)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhH
Confidence 5555555544443
No 32
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=95.46 E-value=0.68 Score=54.51 Aligned_cols=75 Identities=28% Similarity=0.319 Sum_probs=44.2
Q ss_pred hhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHH
Q 002268 350 QSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEK 429 (944)
Q Consensus 350 k~eFElEle~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkeKEkdl~~Ksk~LkEkEksL~aeEK 429 (944)
+.+++.|+...|..++.++..+ +.++..+|..|.+|+..|+.+.+.|..+++.|..+.+.|..+++.+....+
T Consensus 53 ~~EaeeE~~~~R~Ele~el~~~-------e~rL~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eLee~~~ 125 (514)
T TIGR03319 53 LLEAKEEVHKLRAELERELKER-------RNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEE 125 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555443 444555566666666666666666666666666666666666665555554
Q ss_pred Hh
Q 002268 430 EA 431 (944)
Q Consensus 430 ~l 431 (944)
++
T Consensus 126 e~ 127 (514)
T TIGR03319 126 EL 127 (514)
T ss_pred HH
Confidence 44
No 33
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.24 E-value=3.7 Score=45.51 Aligned_cols=165 Identities=20% Similarity=0.174 Sum_probs=113.8
Q ss_pred HhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhh
Q 002268 398 VQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMK 477 (944)
Q Consensus 398 ~k~~~lkeKEkdl~~Ksk~LkEkEksL~aeEK~le~ek~~L~~ekEel~~lK~dlEK~~a~~e~q~~qi~ee~e~Lkite 477 (944)
+...++..|..=++=+++.+..--..|...-..|......|.+..+.+..+...+....+.+..+...+...... +..
T Consensus 128 K~~aRl~aK~~WYeWR~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e--~~~ 205 (325)
T PF08317_consen 128 KTYARLEAKKMWYEWRMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEE--IES 205 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhh
Confidence 344455555556666666666555555555555555555555555555555555555555555554444443333 222
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 002268 478 SEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSL 557 (944)
Q Consensus 478 ~Er~E~~~Lq~eLKeEId~~R~Qke~L~kEae~Lk~eK~kFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erL 557 (944)
-+..++ ..||++|.....+-..+-++.++|+.++..-...++.+.+++.++..+.......++....|=.+|-.+|
T Consensus 206 ~D~~eL----~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~L 281 (325)
T PF08317_consen 206 CDQEEL----EALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRL 281 (325)
T ss_pred cCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 334444 3466777777777788888889999999999999999999999999999999999998899999999999
Q ss_pred HHHHHHHHHHH
Q 002268 558 RQERDAMRDQH 568 (944)
Q Consensus 558 K~Ek~~~r~~~ 568 (944)
|..-+.++...
T Consensus 282 k~~~~~Le~~~ 292 (325)
T PF08317_consen 282 KAKVDALEKLT 292 (325)
T ss_pred HHHHHHHHHHH
Confidence 99988887654
No 34
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=95.21 E-value=18 Score=48.73 Aligned_cols=454 Identities=18% Similarity=0.217 Sum_probs=239.2
Q ss_pred HHhhhcHHHHHHHHHHHHHHHh-------hh---hhhhhhhhhhh-------------hhhh---hhHHHHHHHHHHHHH
Q 002268 40 SIKRRDKAALIAYIAKLETEIF-------EH---QHHMGLLILEK-------------KELA---SKYEQIKASAEAAEL 93 (944)
Q Consensus 40 s~~rrD~~aLia~IskLE~Ely-------dY---QynMGLLLiEk-------------KEwt---SK~eel~qa~~eae~ 93 (944)
+-.+.+.+-|-.+++.|++.|- .| +|||..-+.+. ..++ |+..++++.+-..+.
T Consensus 861 ~~~~~~~~~le~k~~eL~k~l~~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eq 940 (1822)
T KOG4674|consen 861 DSVSTNIAKLEIKLSELEKRLKSAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEEYSSLEQ 940 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888888888888752 11 34666555432 2333 455666778888889
Q ss_pred HHhhhhhhhhhHHHHHHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhh
Q 002268 94 LQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKL 173 (944)
Q Consensus 94 ~lKREqaahl~ALsEaeKREEnLkKALgvEKqCVadLEKAL~emr~E~AeiK~~sesKlaeA~aLv~~~eeKs~evE~Kl 173 (944)
+|.+....|=-...+++.+-+++.+-+.-=..=+..|++-.-.++.+++-.....+++++.+..-+.++..-...+....
T Consensus 941 sl~~~ks~lde~~~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~ 1020 (1822)
T KOG4674|consen 941 SLESVKSELDETRLELEAKIESLHKKITSLEEELSELEKEIENLREELELSTKGKEDKLLDLSREISSLQNELKSLLKAA 1020 (1822)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999998888888888888877765544444456677777777877777778888888888887777766554444332
Q ss_pred hhhhHHHHHHhcchhHHhhhHHHHhhhhhHHHHHHhHhhhhhhhHHHHHHHH---HhchHHHHHHhHHHHHHHHHHhhhh
Q 002268 174 HAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRE---RQSLSDRKKILQQEHERLLDAQTLL 250 (944)
Q Consensus 174 ~aAea~~AEa~Rk~s~~erkL~evEaRE~~LrrerlSf~~e~ea~e~~~~~q---re~L~eweK~Lqe~eerl~e~q~~l 250 (944)
-.+++..+.+-.. |..++.+......-|+.++..- .+.|.....-+......+.+.....
T Consensus 1021 -------s~~~~~~~~~k~d----------l~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~ 1083 (1822)
T KOG4674|consen 1021 -------SQANEQIEDLQND----------LKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDELLKLKKSR 1083 (1822)
T ss_pred -------HHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 2333333333332 3333334444444444443221 2334444444444444444444444
Q ss_pred hhhhHhhhhhHHHHhHhHHHHH----HHhhcHH---HHHHHHhhhhhhhhHhHH--HHhhhHHHHHHHHHH--HHHhHHh
Q 002268 251 NEREDHILSKLQELSRKEKELE----ASRANVE---EKFKALNEEKSNLDLTLV--SLLKREEAVIEREAS--LQKKEQK 319 (944)
Q Consensus 251 NqREe~~~e~~~~l~~kEkeLE----e~~~kie---~~~~~Lk~ke~dl~~r~~--~l~~rEe~~~~~~~~--L~~KEke 319 (944)
-++..-.-+..+-....++-|+ ...+.|. ..+..|...=+.+....+ .++.-..-...+... .--+|++
T Consensus 1084 ~~~~~~l~e~~~~w~E~~~~Leqe~~~~~~~~~~L~~qNslLh~qie~~s~~~~~~n~S~~~~g~sdL~~iv~~LR~Eke 1163 (1822)
T KOG4674|consen 1084 ESRHALLSEQERDWSEKEDALEQEVNELKKRIESLEKQNSLLHDQFEELSQQSAVSNLSAMLLGLSDLQNIVSFLRKEKE 1163 (1822)
T ss_pred HHHHhHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHhHHH
Confidence 4443333333222222222222 2222221 122222222222222211 111111111111110 1124455
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHhHHHHhhhhhhHHHHHHHHhhhH---------HHHHHHHHHHHH-hhhh------hhh
Q 002268 320 LLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLA---------EDEIEKKRRAWE-LRDL------DLG 383 (944)
Q Consensus 320 Ll~leEKL~aRE~~eIQkLldeh~a~L~~Kk~eFElEle~krKs~---------eeEle~K~~~~E-~rEv------el~ 383 (944)
+..-+-.+.-+|...... +-+.+.....++...|...|.++ +.+|-.++..|. .+|- +..
T Consensus 1164 i~~tk~~~lk~e~~~L~q----q~~~~~k~i~dL~~sL~~~r~~~q~~a~s~~e~~~i~~~v~~vNll~EsN~~LRee~~ 1239 (1822)
T KOG4674|consen 1164 IAETKLDTLKRENARLKQ----QVASLNRTIDDLQRSLTAERASSQKSAVSDDEHKEILEKVEEVNLLRESNKVLREENE 1239 (1822)
T ss_pred HHhhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 554444455555433322 22333444444444555555555 344555555554 2222 233
Q ss_pred hhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHH-------HH-----HHHHHHHHHHHHH
Q 002268 384 QREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKS-------LL-----QKEKEEVNIIKSD 451 (944)
Q Consensus 384 h~Eekl~kREqaLe~k~~~lkeKEkdl~~Ksk~LkEkEksL~aeEK~le~ek~-------~L-----~~ekEel~~lK~d 451 (944)
+-..++ +.|..+..++.-.=.-|..-++.|+..=....++=+.++.+.. .| ..|+.++..++.+
T Consensus 1240 ~~~~k~----qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~e 1315 (1822)
T KOG4674|consen 1240 ANLEKI----QELRDKIEKLNFELAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSE 1315 (1822)
T ss_pred HHHHHH----HHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 333333 3444444444433333333334444333333333333333322 12 2347788888888
Q ss_pred HHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHH
Q 002268 452 LQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEK 528 (944)
Q Consensus 452 lEK~~a~~e~q~~qi~ee~e~Lkite~Er~E~~~Lq~eLKeEId~~R~Qke~L~kEae~Lk~eK~kFE~EWE~LDEK 528 (944)
|......+++....|.+-... +.++|-++|...|..-..+..+.++...|+.-+-+.+.-|.-.-.+
T Consensus 1316 i~~Lk~el~~ke~~~~el~~~----------~~~~q~~~k~qld~l~~e~~~lt~~~~ql~~~~~rL~~~~~e~~~q 1382 (1822)
T KOG4674|consen 1316 ISRLKEELEEKENLIAELKKE----------LNRLQEKIKKQLDELNNEKANLTKELEQLEDLKTRLAAALSEKNAQ 1382 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888887666666555443 4455578888888888899999999999999999999999876666
No 35
>PRK00106 hypothetical protein; Provisional
Probab=95.08 E-value=1.9 Score=51.41 Aligned_cols=74 Identities=27% Similarity=0.308 Sum_probs=38.0
Q ss_pred hhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHH
Q 002268 351 SEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKE 430 (944)
Q Consensus 351 ~eFElEle~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkeKEkdl~~Ksk~LkEkEksL~aeEK~ 430 (944)
.+++.|+...|..++.++...... +..+|..|.+|+..|+.+.+.|..+++.|..+.+.|..+++.+....++
T Consensus 75 lEaeeEi~~~R~ElEkel~eEr~r-------L~qrE~rL~qREE~LekRee~LekrE~eLe~kekeLe~reeeLee~~~~ 147 (535)
T PRK00106 75 LEAKEEARKYREEIEQEFKSERQE-------LKQIESRLTERATSLDRKDENLSSKEKTLESKEQSLTDKSKHIDEREEQ 147 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555444433333 4444555555555555555555555555555555555555555444444
Q ss_pred h
Q 002268 431 A 431 (944)
Q Consensus 431 l 431 (944)
+
T Consensus 148 ~ 148 (535)
T PRK00106 148 V 148 (535)
T ss_pred H
Confidence 4
No 36
>PRK11637 AmiB activator; Provisional
Probab=94.92 E-value=9 Score=43.75 Aligned_cols=26 Identities=15% Similarity=0.394 Sum_probs=15.4
Q ss_pred hhHHHHHHHHHHHhhhhhHhhhhhhH
Q 002268 591 SEWFTKIQQERADFLLGIEMQKRDLE 616 (944)
Q Consensus 591 s~~~ek~q~Erad~l~d~EmqkreLe 616 (944)
..++..+.+-+.+++..|.-.+..|+
T Consensus 158 ~~~l~~i~~~d~~~l~~l~~~~~~L~ 183 (428)
T PRK11637 158 LAYFGYLNQARQETIAELKQTREELA 183 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666666666555
No 37
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=94.92 E-value=0.0071 Score=74.16 Aligned_cols=221 Identities=22% Similarity=0.246 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHHHhhhhh-------hhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHhhHhhh
Q 002268 45 DKAALIAYIAKLETEIFEHQH-------HMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLK 117 (944)
Q Consensus 45 D~~aLia~IskLE~ElydYQy-------nMGLLLiEkKEwtSK~eel~qa~~eae~~lKREqaahl~ALsEaeKREEnLk 117 (944)
.+..|....++|++|+-++.. ..+-|--.+.-|.+..++++..+++- .+.+.+-...+..++.-=+.|+
T Consensus 202 ~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeE----tr~k~~L~~~l~~le~e~~~L~ 277 (859)
T PF01576_consen 202 QRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEE----TRAKQALEKQLRQLEHELEQLR 277 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhH----hhhhhhhHHHHHHHHHHHHHHH
Confidence 344555666677777665544 44445445556666666665555442 1222222334555555566888
Q ss_pred hhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhHHHH
Q 002268 118 KTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEV 197 (944)
Q Consensus 118 KALgvEKqCVadLEKAL~emr~E~AeiK~~sesKlaeA~aLv~~~eeKs~evE~Kl~aAea~~AEa~Rk~s~~erkL~ev 197 (944)
..|.-+-.+...|++.|.-+.++.+.+|--++.-... .+..+++=---...+|..+...+-+++.+.+.+++.-+-+
T Consensus 278 eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~---~~EelEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL 354 (859)
T PF01576_consen 278 EQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQ---RTEELEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRL 354 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888899999999999888888887666553332 2222322222233455555555555565555555554444
Q ss_pred hhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHhHHHHHHHHHHhhhhhhhhHhhhhhHHHHhHhHHHHH
Q 002268 198 VAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELE 272 (944)
Q Consensus 198 EaRE~~LrrerlSf~~e~ea~e~~~~~qre~L~eweK~Lqe~eerl~e~q~~lNqREe~~~e~~~~l~~kEkeLE 272 (944)
.+=-.+++-+.-...+.+...++...+--..|.+|..++......+-..++-....+-.++..-..+....-.++
T Consensus 355 ~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e 429 (859)
T PF01576_consen 355 QGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLE 429 (859)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHH
Confidence 444444444444444444455544333336678888887777666666666555555555555555544444444
No 38
>PRK12704 phosphodiesterase; Provisional
Probab=94.57 E-value=0.51 Score=55.59 Aligned_cols=62 Identities=32% Similarity=0.358 Sum_probs=30.5
Q ss_pred HhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhh
Q 002268 360 KYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKL 424 (944)
Q Consensus 360 krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkeKEkdl~~Ksk~LkEkEksL 424 (944)
.+..++.++...+.+++ .++..++..+.+||..|+.+.+.|..++..|+.+-..|..+++.|
T Consensus 58 ~~leaeeE~~~~R~Ele---~e~~~~e~~L~qrE~rL~~Ree~Le~r~e~Lekke~eL~~re~~L 119 (520)
T PRK12704 58 ALLEAKEEIHKLRNEFE---KELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKEL 119 (520)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455655555554 445555666666666555554444444444444444444333333
No 39
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=94.54 E-value=17 Score=45.34 Aligned_cols=243 Identities=22% Similarity=0.212 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHhhHhhhhhhhhHHHHH
Q 002268 48 ALIAYIAKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECI 127 (944)
Q Consensus 48 aLia~IskLE~ElydYQynMGLLLiEkKEwtSK~eel~qa~~eae~~lKREqaahl~ALsEaeKREEnLkKALgvEKqCV 127 (944)
.+..-|..|..|| --|..|+-|.-+...-++-|+.+.. ++-+..-+-|=++-|=-+..| +
T Consensus 71 ~~~~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~-ld~~~~q~~rl~~E~er~~~E------------------l 130 (775)
T PF10174_consen 71 KAQEEIQALQEEL-RAQRELNRLQQELEKAQYEFESLQE-LDKAQEQFERLQAERERLQRE------------------L 130 (775)
T ss_pred HHHHHHHHHHHHH-HHhhHHHHHHHHhhhcccccchhhh-hhhHHHHHHHHHHHHHHHHHH------------------H
Confidence 4556667777777 7777777666665555555665555 554443332211111111111 1
Q ss_pred HhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhHHHHhhhhhHHHHH
Q 002268 128 ASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRR 207 (944)
Q Consensus 128 adLEKAL~emr~E~AeiK~~sesKlaeA~aLv~~~eeKs~evE~Kl~aAea~~AEa~Rk~s~~erkL~evEaRE~~Lrre 207 (944)
.-|-+.|-+|+..+.-.+.+-+..-.+...|..-++.|-..++ +..-.+.+.+.+.+.+++-..|+--
T Consensus 131 ~~lr~~lE~~q~~~e~~q~~l~~~~eei~kL~e~L~~~g~~~~------------~~~~~~~~~~~~~~~e~~~~~le~l 198 (775)
T PF10174_consen 131 ERLRKTLEELQLRIETQQQTLDKADEEIEKLQEMLQSKGLSAE------------AEEEDNEALRRIREAEARIMRLESL 198 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccc------------chhhhhHHHHHHHHHHHHHHHHHHH
Confidence 2244677778888888888888877777777777655544431 1111122333333333333222211
Q ss_pred HhHhhhhhhhHHHHHHHHHhchHHHHHHhHHHHH-HHH-HHhhhhhhhhHhhhhhHHHHhHhHHHHHHHhhcHHHHHHHH
Q 002268 208 IASFKADCEEKEREIIRERQSLSDRKKILQQEHE-RLL-DAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKAL 285 (944)
Q Consensus 208 rlSf~~e~ea~e~~~~~qre~L~eweK~Lqe~ee-rl~-e~q~~lNqREe~~~e~~~~l~~kEkeLEe~~~kie~~~~~L 285 (944)
.+.++.....-|+ .....++-..+ ... -.|..|...+..|.+..+.+..++-++.-++..++....--
T Consensus 199 -------le~~e~~~~~~r~---~l~~~~~~~~~~a~t~alq~~ie~Kd~ki~~lEr~l~~le~Ei~~L~~~~~~~~~~r 268 (775)
T PF10174_consen 199 -------LERKEKEHMEARE---QLHRRLQMERDDAETEALQTVIEEKDTKIASLERMLRDLEDEIYRLRSRGELSEADR 268 (775)
T ss_pred -------HHHHHHHhhhhhH---HHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccch
Confidence 1111111111111 00000000000 000 23555666666666666666666666665555444332211
Q ss_pred hhhhhhhhH-hHHHHhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhH
Q 002268 286 NEEKSNLDL-TLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESN 333 (944)
Q Consensus 286 k~ke~dl~~-r~~~l~~rEe~~~~~~~~L~~KEkeLl~leEKL~aRE~~ 333 (944)
......+.. +...+..+-+ ++..+..|..+..||..++-+|......
T Consensus 269 ~~~~k~le~~~s~~~~mK~k-~d~~~~eL~rk~~E~~~~qt~l~~~~~~ 316 (775)
T PF10174_consen 269 DRLDKQLEVYKSHSLAMKSK-MDRLKLELSRKKSELEALQTRLETLEEQ 316 (775)
T ss_pred HHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 111011111 1111111111 6777777888888888888887766643
No 40
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=94.28 E-value=0.64 Score=54.72 Aligned_cols=70 Identities=29% Similarity=0.291 Sum_probs=37.0
Q ss_pred HHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHh
Q 002268 359 IKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEA 431 (944)
Q Consensus 359 ~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkeKEkdl~~Ksk~LkEkEksL~aeEK~l 431 (944)
..+..++.++..++.+++ .++..++..+.+||..|+.+.+.|..++..|+.+-..|..+++.|..-++++
T Consensus 51 e~~~EaeeE~~~~R~Ele---~el~~~e~rL~qrE~rL~qRee~Lekr~e~Lekre~~Le~ke~~L~~re~eL 120 (514)
T TIGR03319 51 EALLEAKEEVHKLRAELE---RELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNL 120 (514)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344556666665554 4455566666666666655555555555555555444444444444444433
No 41
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=94.27 E-value=22 Score=45.41 Aligned_cols=299 Identities=23% Similarity=0.294 Sum_probs=163.7
Q ss_pred HHHHhHhhhhhhhHHHHHHHHHhchHHHHHHhHHHHHHHHHHhhhhhhhhHhhhhhHHHHhHhHHHHHHHhhcHH---HH
Q 002268 205 SRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVE---EK 281 (944)
Q Consensus 205 rrerlSf~~e~ea~e~~~~~qre~L~eweK~Lqe~eerl~e~q~~lNqREe~~~e~~~~l~~kEkeLEe~~~kie---~~ 281 (944)
|.+.++.--|-+-+...|..-=+.+.++=..|.+..+.|..-|.+=++| +.-+++.-.++|-++...++ ..
T Consensus 172 reeSlkim~ET~qK~ekI~ell~yieerLreLEeEKeeL~~Yqkldk~r------r~lEYtiYdrEl~E~~~~l~~le~~ 245 (1200)
T KOG0964|consen 172 REESLKIMEETKQKREKINELLKYIEERLRELEEEKEELEKYQKLDKER------RSLEYTIYDRELNEINGELERLEED 245 (1200)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhH------hhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 3455666677777778888877888888778888888888877765555 33345566666666665543 33
Q ss_pred HHHHhhhhhhhhHhHHHHhhhHHHHHHHHHHHHHhHHhHHHHHH---HHhhhhhHHHHHHHHHhHHHHhhhhhhHHHHHH
Q 002268 282 FKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQE---TLASKESNEIQKIIANHESALRVKQSEFEAELA 358 (944)
Q Consensus 282 ~~~Lk~ke~dl~~r~~~l~~rEe~~~~~~~~L~~KEkeLl~leE---KL~aRE~~eIQkLldeh~a~L~~Kk~eFElEle 358 (944)
+.+.-++-+++. ..+..++.+.......+..-|..|..|-+ .+.+++..-+++ ++.|..+..+|--+++
T Consensus 246 r~~~~e~s~~~~---~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~~~k~-----kt~lel~~kdlq~~i~ 317 (1200)
T KOG0964|consen 246 RSSAPEESEQYI---DALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETKISKK-----KTKLELKIKDLQDQIT 317 (1200)
T ss_pred HhccchhhhhHH---HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhhhhhhhHHHHHHhh
Confidence 334444433333 33444555555666555555555555433 445555544443 3344444444444433
Q ss_pred HH---hhhHHHHHHHHHHHHHhhhhhhhhhH---HHHHhhhhhHHHhHHHHHHhhhhHHHH------hhhhHHHHhhhHH
Q 002268 359 IK---YKLAEDEIEKKRRAWELRDLDLGQRE---ESLLEREHDLEVQSRALVDKEKDLVER------SHLLEEKENKLIA 426 (944)
Q Consensus 359 ~k---rKs~eeEle~K~~~~E~rEvel~h~E---ekl~kREqaLe~k~~~lkeKEkdl~~K------sk~LkEkEksL~a 426 (944)
-- |++.-..++.=....+.++.+++..+ ..+...|..+...+..+..+..||-+| +++-+++++=|+.
T Consensus 318 ~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~eRDkwir~ 397 (1200)
T KOG0964|consen 318 GNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEERDKWIRS 397 (1200)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHHHHHHHHH
Confidence 21 11111111111122222222222222 123334444444555555555555443 3444667777776
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHH
Q 002268 427 FEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMV 506 (944)
Q Consensus 427 eEK~le~ek~~L~~ekEel~~lK~dlEK~~a~~e~q~~qi~ee~e~Lkite~Er~E~~~Lq~eLKeEId~~R~Qke~L~k 506 (944)
+=..| +.-+..-++..+.+.-|++-+...+++...+|..-...+.-++..-.++...-..||++.|..-.....|=-
T Consensus 398 ei~~l---~~~i~~~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWR 474 (1200)
T KOG0964|consen 398 EIEKL---KRGINDTKEQENILQKEIEDLESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDKRKELWR 474 (1200)
T ss_pred HHHHH---HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666 666777777777777777777776666666666655566656666666666666666666665554445555
Q ss_pred hhHHHHHHHHHHHH
Q 002268 507 ETDKLQLEKAKFEA 520 (944)
Q Consensus 507 Eae~Lk~eK~kFE~ 520 (944)
|.-.|+..-++.+-
T Consensus 475 EE~~l~~~i~~~~~ 488 (1200)
T KOG0964|consen 475 EEKKLRSLIANLEE 488 (1200)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555554444443
No 42
>PRK00106 hypothetical protein; Provisional
Probab=94.07 E-value=2.5 Score=50.42 Aligned_cols=34 Identities=29% Similarity=0.315 Sum_probs=21.6
Q ss_pred Cchhhhhhcccchhhcchhhhhhccccc--cccchhhhhhccc
Q 002268 867 SENEVVKRTVDLESENNQNAAQKCKQSV--SEDGIHAARKRRV 907 (944)
Q Consensus 867 s~~~~~~~~~~~es~~~~~~n~~~~~~~--~~~~~~a~rkrr~ 907 (944)
|+...+++--+||.-++ . ||= .--++||||-=||
T Consensus 452 s~~~~i~rl~~lE~ia~----~---~~gV~~~yaiqaGREiRv 487 (535)
T PRK00106 452 SMENYIKRLRDLEEIAN----S---FDGVQNSFALQAGREIRI 487 (535)
T ss_pred CHHHHHHHHHHHHHHHh----c---CCcHHHHHHHhcCCeEEE
Confidence 55666777667766553 2 232 2346899999997
No 43
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=93.46 E-value=1.7 Score=45.17 Aligned_cols=70 Identities=33% Similarity=0.395 Sum_probs=45.9
Q ss_pred HHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhH
Q 002268 356 ELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLI 425 (944)
Q Consensus 356 Ele~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkeKEkdl~~Ksk~LkEkEksL~ 425 (944)
++...|..++.++..++.++..+|..|..+|+.|..+...|+.+...|..++.+|..+...|..++..+.
T Consensus 61 e~~~~r~~~E~E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~ 130 (201)
T PF12072_consen 61 EAQKLRQELERELKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELE 130 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555777888888888888777777666666666666666666666666666655555555555554444
No 44
>PHA02562 46 endonuclease subunit; Provisional
Probab=92.43 E-value=26 Score=40.69 Aligned_cols=89 Identities=20% Similarity=0.311 Sum_probs=51.1
Q ss_pred hhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 002268 455 SLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRK 534 (944)
Q Consensus 455 ~~a~~e~q~~qi~ee~e~Lkite~Er~E~~~Lq~eLKeEId~~R~Qke~L~kEae~Lk~eK~kFE~EWE~LDEKR~el~K 534 (944)
.++.++.+...+......++....+..++..--.+|...|..+|.....+..+...|+.+..+.+..=..+.++-..+..
T Consensus 307 ~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~ 386 (562)
T PHA02562 307 KLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQD 386 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHH
Confidence 44555555555555555555555555555555566666666666666666666666666666666554444444444444
Q ss_pred HHHHHHHHH
Q 002268 535 EAERVAVER 543 (944)
Q Consensus 535 Ea~~I~eEr 543 (944)
++..+..++
T Consensus 387 ~l~~~~~~~ 395 (562)
T PHA02562 387 ELDKIVKTK 395 (562)
T ss_pred HHHHHHHHH
Confidence 444444333
No 45
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=92.03 E-value=61 Score=44.13 Aligned_cols=453 Identities=20% Similarity=0.194 Sum_probs=213.4
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhh----------------hhHHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 002268 47 AALIAYIAKLETEIFEHQHHMGLLILEKKELA----------------SKYEQIKASAEAAELLQKHDRASHLSAIAEAR 110 (944)
Q Consensus 47 ~aLia~IskLE~ElydYQynMGLLLiEkKEwt----------------SK~eel~qa~~eae~~lKREqaahl~ALsEae 110 (944)
..+-++|+.|++++-+---+.--|+=++..|. |..++..+... .+..+..-+...=+...|..
T Consensus 575 ~~a~e~i~~L~~~l~e~~~~i~sLl~erd~y~e~l~~~e~~~~~k~nss~~~~t~~~~~-~e~~l~qLe~~le~~~~E~~ 653 (1822)
T KOG4674|consen 575 NEASEKIAELEKELEEQEQRIESLLTERDMYKELLAELEDSHQLKPNSSALDQTEAPRA-KEKRLRQLENELESYKKEKR 653 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCCCCchhhcccccchh-HHHHHHHHHHHHHHHHHHHH
Confidence 35668889999988777777777777777762 11111111110 11111111111112222222
Q ss_pred HhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhh---hhhhhhhHHHHHHH-------HHhhhhHHHHHhhhhhhHHH
Q 002268 111 KREESLKKTLGVEKECIASLEKAVHEIRAESAETKV---AADSKFAEARCMVE-------NAQKKFAEAEAKLHAAESLQ 180 (944)
Q Consensus 111 KREEnLkKALgvEKqCVadLEKAL~emr~E~AeiK~---~sesKlaeA~aLv~-------~~eeKs~evE~Kl~aAea~~ 180 (944)
++...|.+. +.+|.+-..+||...-..+. .|--|+.-.+--|+ .+.+....+..=++..+...
T Consensus 654 ~~~~~l~e~-------~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~~~~q~~ 726 (1822)
T KOG4674|consen 654 ENLKKLQED-------FDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTISKQEQTV 726 (1822)
T ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222 23444444444444433331 12223333333333 23344444555667777777
Q ss_pred HHHhcchhHHhhhHHHHhhhhhHHHHHHhHhh-------hhhhhHHHHHHHHHhchHHHHHHhHHHHHHHHHHhhhhhhh
Q 002268 181 AEANRYHRSAERKLQEVVAREDDLSRRIASFK-------ADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNER 253 (944)
Q Consensus 181 AEa~Rk~s~~erkL~evEaRE~~LrrerlSf~-------~e~ea~e~~~~~qre~L~eweK~Lqe~eerl~e~q~~lNqR 253 (944)
..++--...+..++.-+++.=+.|+.+-..|. .|.+++....+.++..|...+-.....++....+..-+++
T Consensus 727 ~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~- 805 (1822)
T KOG4674|consen 727 HTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCES- 805 (1822)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 78887888888899999998888888876665 3455555555555555555555444444444444444442
Q ss_pred hHhhhhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHH----HHhhhHHHHHHHH-------HHHHHhHHhHHH
Q 002268 254 EDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLV----SLLKREEAVIERE-------ASLQKKEQKLLV 322 (944)
Q Consensus 254 Ee~~~e~~~~l~~kEkeLEe~~~kie~~~~~Lk~ke~dl~~r~~----~l~~rEe~~~~~~-------~~L~~KEkeLl~ 322 (944)
.+..++.+|..++++++....-++.-..+++.-+. .+..-....+.+. ..+.+.|..+..
T Consensus 806 ---------~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~e 876 (1822)
T KOG4674|consen 806 ---------RIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSE 876 (1822)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23444555555555555555444443333333222 2222223333333 333344444444
Q ss_pred HHHHHhhhhhHHHHHHHHHh---HHHHhhhhhhHHHHHHHH---hhhHHHHHH---HHHHHHHhhhhhhhhhHHHHHhhh
Q 002268 323 SQETLASKESNEIQKIIANH---ESALRVKQSEFEAELAIK---YKLAEDEIE---KKRRAWELRDLDLGQREESLLERE 393 (944)
Q Consensus 323 leEKL~aRE~~eIQkLldeh---~a~L~~Kk~eFElEle~k---rKs~eeEle---~K~~~~E~rEvel~h~Eekl~kRE 393 (944)
|..+|. .+.++.+..++ .....-+-..|..++++- +..|-.... +=-...-.-|.-|..+...+.+--
T Consensus 877 L~k~l~---~~~~~~~~l~~~~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~lde~~ 953 (1822)
T KOG4674|consen 877 LEKRLK---SAKTQLLNLDSKSSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELDETR 953 (1822)
T ss_pred HHHHHH---HhHHHHhhccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444442 35666666665 233333334466655554 222222221 111222223333333333333333
Q ss_pred hhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhH--------HHHHH---hHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Q 002268 394 HDLEVQSRALVDKEKDLVERSHLLEEKENKLI--------AFEKE---ADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEK 462 (944)
Q Consensus 394 qaLe~k~~~lkeKEkdl~~Ksk~LkEkEksL~--------aeEK~---le~ek~~L~~ekEel~~lK~dlEK~~a~~e~q 462 (944)
+.++.+.+.+..+--.|+.++..|+..=..|. -.+++ +..+...++.+...+.....+..+....+.+.
T Consensus 954 ~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~~~~k~d 1033 (1822)
T KOG4674|consen 954 LELEAKIESLHKKITSLEEELSELEKEIENLREELELSTKGKEDKLLDLSREISSLQNELKSLLKAASQANEQIEDLQND 1033 (1822)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444433333332211111 11221 22233334444444444444444333333333
Q ss_pred HHHHHHHHhhhhhhhhhh----hhHH---HHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHh
Q 002268 463 KKQVNCAKDKLEAMKSEA----GELS---VLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWE 523 (944)
Q Consensus 463 ~~qi~ee~e~Lkite~Er----~E~~---~Lq~eLKeEId~~R~Qke~L~kEae~Lk~eK~kFE~EWE 523 (944)
+..+ .+.+..+.+.- ..|. ..=.+|+++..+|-.+-..|-+.++-+...-..|++-|.
T Consensus 1034 l~~~---~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~~~~~~~l~e~~~~w~ 1098 (1822)
T KOG4674|consen 1034 LKTE---TEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDELLKLKKSRESRHALLSEQERDWS 1098 (1822)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhhcccchH
Confidence 3222 22222222211 1111 122456777777877888888888888888888888885
No 46
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=91.65 E-value=52 Score=42.57 Aligned_cols=295 Identities=19% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHH
Q 002268 359 IKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLL 438 (944)
Q Consensus 359 ~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkeKEkdl~~Ksk~LkEkEksL~aeEK~le~ek~~L 438 (944)
++++++..|++..-..-+.-|+=....+++...-..-.==++=.+.-.-.++...+..++.-=.++...-..- -..+
T Consensus 181 ~kkk~I~aEkk~aK~~k~eaeky~~lkde~~~~q~e~~L~qLfhvE~~i~k~~~els~~~~ei~~~~~~~d~~---e~ei 257 (1141)
T KOG0018|consen 181 KKKKSIAAEKKEAKEGKEEAEKYQRLKDEKGKAQKEQFLWELFHVEACIEKANDELSRLNAEIPKLKERMDKK---EREI 257 (1141)
T ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhhhHHHHHHhhhhHHHHhhhhHH---HHHH
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHH
Q 002268 439 QKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKF 518 (944)
Q Consensus 439 ~~ekEel~~lK~dlEK~~a~~e~q~~qi~ee~e~Lkite~Er~E~~~Lq~eLKeEId~~R~Qke~L~kEae~Lk~eK~kF 518 (944)
..-+.+.-++-.++.++-..+..+..++.+-.+-+++-++= +.++--|......-.-..+.+..++..-++|
T Consensus 258 ~~~k~e~~ki~re~~~~Dk~i~~ke~~l~erp~li~~ke~~--------~~~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ 329 (1141)
T KOG0018|consen 258 RVRKKERGKIRRELQKVDKKISEKEEKLAERPELIKVKENA--------SHLKKRLEEIEKDIETAKKDYRALKETIERL 329 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhcchhh--------ccchhHHHHhhhhHHHHHHHHHhhHHHHHHH
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHH---HHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhh---hhh
Q 002268 519 EAEWEMIDEKREELRKEAERVAVERV---VVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHE---HSE 592 (944)
Q Consensus 519 E~EWE~LDEKR~el~KEa~~I~eEre---~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~M~hE---~s~ 592 (944)
+++|..++-+++...+|.+.+...|- ++..-..-|.++|+.+-...- ..+|+.|++...+=-+...|+ +..
T Consensus 330 ek~l~av~~~~~~fekei~~~~q~rg~~lnl~d~~~~ey~rlk~ea~~~~---~~el~~ln~~~r~~~~~ld~~~~~~~e 406 (1141)
T KOG0018|consen 330 EKELKAVEGAKEEFEKEIEERSQERGSELNLKDDQVEEYERLKEEACKEA---LEELEVLNRNMRSDQDTLDHELERRAE 406 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHHHHhhHHHHHHH
Q ss_pred HHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHH
Q 002268 593 WFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLE 672 (944)
Q Consensus 593 ~~ek~q~Erad~l~d~EmqkreLe~~i~~R~EE~E~~L~EREk~FEeek~~EL~~IN~lke~a~kE~E~v~lE~~rLe~E 672 (944)
+.+++...+.+. ..+.+++..+.-...+-.+..++.+ ..+.-+-++...+..+.-+...|+...-..
T Consensus 407 lE~r~k~l~~sv------------er~~~~~~~L~~~i~s~~~~~~e~~-~d~~~l~~~~~~~~~~~~e~n~eL~~~~~q 473 (1141)
T KOG0018|consen 407 LEARIKQLKESV------------ERLDKRRNKLAAKITSLSRSYEELK-HDLDSLESLVSSAEEEPYELNEELVEVLDQ 473 (1141)
T ss_pred HHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHh-hcHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q ss_pred HHHhhhhh
Q 002268 673 RMEINMDR 680 (944)
Q Consensus 673 r~Ei~~~k 680 (944)
=-....++
T Consensus 474 l~das~dr 481 (1141)
T KOG0018|consen 474 LLDASADR 481 (1141)
T ss_pred HHhhhhhh
No 47
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=91.13 E-value=43 Score=40.60 Aligned_cols=302 Identities=17% Similarity=0.166 Sum_probs=165.6
Q ss_pred hhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhHHHHhhhhhHHHHHHhHhhhhhhhH
Q 002268 139 AESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEK 218 (944)
Q Consensus 139 ~E~AeiK~~sesKlaeA~aLv~~~eeKs~evE~Kl~aAea~~AEa~Rk~s~~erkL~evEaRE~~LrrerlSf~~e~ea~ 218 (944)
.+...||+.++.=++.|.-+|+.+......++..+.....-+.++-.+.-.+
T Consensus 81 ~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~---------------------------- 132 (546)
T KOG0977|consen 81 RETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRKKLEKA---------------------------- 132 (546)
T ss_pred CCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----------------------------
Confidence 5778999999999999999999998888877777666555554443332222
Q ss_pred HHHHHHHHhchHHHHHHhHHHHHHHHHHhhhhhhhhHhhhhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHH
Q 002268 219 EREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVS 298 (944)
Q Consensus 219 e~~~~~qre~L~eweK~Lqe~eerl~e~q~~lNqREe~~~e~~~~l~~kEkeLEe~~~kie~~~~~Lk~ke~dl~~r~~~ 298 (944)
++...--|+++.+|...|-+.+.-++-.++-+..=++.....-+...++..+|..+++-++.+...-.+-...+..-+..
T Consensus 133 ~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Llee 212 (546)
T KOG0977|consen 133 EKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEE 212 (546)
T ss_pred HHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 12222346778888888888888888888877777777777777788888888888888877754433333222222222
Q ss_pred HhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhh-HHHHHHH-HHhHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHH
Q 002268 299 LLKREEAVIEREASLQKKEQKLLVSQETLASKES-NEIQKII-ANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWE 376 (944)
Q Consensus 299 l~~rEe~~~~~~~~L~~KEkeLl~leEKL~aRE~-~eIQkLl-deh~a~L~~Kk~eFElEle~krKs~eeEle~K~~~~E 376 (944)
|.-. ...=+.+|.+..-+ ..|+. ...+... ++-..++.-=+-+||.-+..-|+.++.=.+.|+.++.
T Consensus 213 l~f~----------~~~h~~eI~e~~~~-~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~ 281 (546)
T KOG0977|consen 213 LAFL----------KRIHKQEIEEERRK-ARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIR 281 (546)
T ss_pred HHHH----------HhccHHHHHHHHHH-HhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 2111 11222333332222 12221 1111110 0111122223445666666677777777777776665
Q ss_pred hhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 002268 377 LRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSL 456 (944)
Q Consensus 377 ~rEvel~h~Eekl~kREqaLe~k~~~lkeKEkdl~~Ksk~LkEkEksL~aeEK~le~ek~~L~~ekEel~~lK~dlEK~~ 456 (944)
..=.--+ ..-+..-+.|...-.-+.+-..-|-+-|..-.+.++.|+.=+.+|..++......=++.+...
T Consensus 282 ~~~~~~~----------~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~~kd~~i 351 (546)
T KOG0977|consen 282 TSAERAN----------VEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQALNDKDAEI 351 (546)
T ss_pred hhhcccc----------chhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhhhhhhhHHHHH
Confidence 3110000 001111122222222222222233333444555566666666777776666655555554444
Q ss_pred hhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHH
Q 002268 457 SSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRA 499 (944)
Q Consensus 457 a~~e~q~~qi~ee~e~Lkite~Er~E~~~Lq~eLKeEId~~R~ 499 (944)
+.+-++..++.-+ ...|+-.+.-|--||..||.
T Consensus 352 ~~mReec~~l~~E----------lq~LlD~ki~Ld~EI~~YRk 384 (546)
T KOG0977|consen 352 AKMREECQQLSVE----------LQKLLDTKISLDAEIAAYRK 384 (546)
T ss_pred HHHHHHHHHHHHH----------HHHhhchHhHHHhHHHHHHH
Confidence 4444444444443 44455555788889999985
No 48
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=90.36 E-value=8.1 Score=40.27 Aligned_cols=59 Identities=25% Similarity=0.383 Sum_probs=38.1
Q ss_pred HHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhH
Q 002268 374 AWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEAD 432 (944)
Q Consensus 374 ~~E~rEvel~h~Eekl~kREqaLe~k~~~lkeKEkdl~~Ksk~LkEkEksL~aeEK~le 432 (944)
++..+..++..+|..+.+||..|+.+.+.|..++..|+.+...|..+...+...+..+.
T Consensus 72 E~~~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~~~~~l~~~~~e~~ 130 (201)
T PF12072_consen 72 ELKERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQRKEELEEREEELE 130 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666677777777777777777777777666666666666666555555555553
No 49
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=90.03 E-value=74 Score=41.53 Aligned_cols=85 Identities=12% Similarity=0.191 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHH----HhhhH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Q 002268 490 LKEELDVVRAQKLELMVETDKLQLEKAKFEAE----WEMID-EKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAM 564 (944)
Q Consensus 490 LKeEId~~R~Qke~L~kEae~Lk~eK~kFE~E----WE~LD-EKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~ 564 (944)
+++....+..+...+..+...+++++..|..+ |-.+. +..+..+--...+..+-+.+..-+.......+.++..+
T Consensus 676 ~~~~~~~~~~~l~~l~~~l~~~~~e~~~~~~~~~~~~~e~~~e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~l 755 (1201)
T PF12128_consen 676 KEERKEQIEEQLNELEEELKQLKQELEELLEELKEQLKELRNELKAQWQELEAELDEQIEQIKQEIAAAKQEAKEQLKEL 755 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555556666666666666555543 22222 44444455555666666777777777777777788888
Q ss_pred HHHHHhhhhh
Q 002268 565 RDQHKRDVDS 574 (944)
Q Consensus 565 r~~~krelE~ 574 (944)
..+|..+|.+
T Consensus 756 e~~~~~eL~~ 765 (1201)
T PF12128_consen 756 EQQYNQELAG 765 (1201)
T ss_pred HHHHHHHHHh
Confidence 8888776644
No 50
>PHA02562 46 endonuclease subunit; Provisional
Probab=88.63 E-value=54 Score=38.11 Aligned_cols=99 Identities=26% Similarity=0.269 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHH
Q 002268 434 KKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQL 513 (944)
Q Consensus 434 ek~~L~~ekEel~~lK~dlEK~~a~~e~q~~qi~ee~e~Lkite~Er~E~~~Lq~eLKeEId~~R~Qke~L~kEae~Lk~ 513 (944)
+...|.++...+.....+++.......+...++.+-...+....+. -..+..++..++.....|.....++..
T Consensus 307 ~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~-------i~~~~~~~~~l~~ei~~l~~~~~~~~~ 379 (562)
T PHA02562 307 KLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQS-------LITLVDKAKKVKAAIEELQAEFVDNAE 379 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhhchHH
Confidence 3444444444444444444444443333333333333333333222 233666777777777777777888888
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHH
Q 002268 514 EKAKFEAEWEMIDEKREELRKEAERV 539 (944)
Q Consensus 514 eK~kFE~EWE~LDEKR~el~KEa~~I 539 (944)
+....+.+|..+...++++.++....
T Consensus 380 ~l~~l~~~l~~~~~~~~~~~ke~~~~ 405 (562)
T PHA02562 380 ELAKLQDELDKIVKTKSELVKEKYHR 405 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999988763
No 51
>PRK04863 mukB cell division protein MukB; Provisional
Probab=87.73 E-value=1.2e+02 Score=40.96 Aligned_cols=105 Identities=15% Similarity=0.209 Sum_probs=56.9
Q ss_pred HhhhhhhHHHHHHhcchhHHhhhHHHHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHhHHHHHHHHHHhhhh
Q 002268 171 AKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLL 250 (944)
Q Consensus 171 ~Kl~aAea~~AEa~Rk~s~~erkL~evEaRE~~LrrerlSf~~e~ea~e~~~~~qre~L~eweK~Lqe~eerl~e~q~~l 250 (944)
.++..|..++..+..+...++..+.+++.+...|++++-....-....+ ++...-..+..+...+.+...++......+
T Consensus 293 ~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~e-e~lr~q~ei~~l~~~LeELee~Lee~eeeL 371 (1486)
T PRK04863 293 RELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQ-TALRQQEKIERYQADLEELEERLEEQNEVV 371 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666667777777777777776665543322222 222223344444445555555555555555
Q ss_pred hhhhHhhhhhHHHHhHhHHHHHHHhh
Q 002268 251 NEREDHILSKLQELSRKEKELEASRA 276 (944)
Q Consensus 251 NqREe~~~e~~~~l~~kEkeLEe~~~ 276 (944)
.+-.+.+.+....+...+.++..++.
T Consensus 372 eeleeeleeleeEleelEeeLeeLqe 397 (1486)
T PRK04863 372 EEADEQQEENEARAEAAEEEVDELKS 397 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555544443
No 52
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=87.50 E-value=1e+02 Score=39.95 Aligned_cols=115 Identities=22% Similarity=0.287 Sum_probs=60.2
Q ss_pred HHhHHhHHHHHHHHhhhhhHHHHHHHHH---hHHHHhhhhhhHH--HHHHHHhhhHH-----HHHHHHHHHHHhhhhhhh
Q 002268 314 QKKEQKLLVSQETLASKESNEIQKIIAN---HESALRVKQSEFE--AELAIKYKLAE-----DEIEKKRRAWELRDLDLG 383 (944)
Q Consensus 314 ~~KEkeLl~leEKL~aRE~~eIQkLlde---h~a~L~~Kk~eFE--lEle~krKs~e-----eEle~K~~~~E~rEvel~ 383 (944)
+.+|.-|.+++|+-..+++ |+.||.. -=-.|+.-|-+++ -+++..|++++ .|+..=+..++.-+.+..
T Consensus 170 erreeSlkim~ET~qK~ek--I~ell~yieerLreLEeEKeeL~~Yqkldk~rr~lEYtiYdrEl~E~~~~l~~le~~r~ 247 (1200)
T KOG0964|consen 170 ERREESLKIMEETKQKREK--INELLKYIEERLRELEEEKEELEKYQKLDKERRSLEYTIYDRELNEINGELERLEEDRS 247 (1200)
T ss_pred HhHHHHHHHHHHHhhhHHH--HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHhhhhhhhhhhHHHHHHHHHHHHHHHHh
Confidence 4566777888888887765 5555544 2233333333333 25667777764 333333334444443333
Q ss_pred h---hHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHH
Q 002268 384 Q---REESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKE 430 (944)
Q Consensus 384 h---~Eekl~kREqaLe~k~~~lkeKEkdl~~Ksk~LkEkEksL~aeEK~ 430 (944)
. .=..+.-.-....-.++.++..=+.|+.++..|.+--..+.+.+-+
T Consensus 248 ~~~e~s~~~~~~~~~~~d~~~~~~~~i~ele~~l~~l~~ekeq~~a~~t~ 297 (1200)
T KOG0964|consen 248 SAPEESEQYIDALDKVEDESEDLKCEIKELENKLTNLREEKEQLKARETK 297 (1200)
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2222222222333345556666667777777777755555555433
No 53
>PRK12705 hypothetical protein; Provisional
Probab=87.47 E-value=35 Score=40.91 Aligned_cols=60 Identities=25% Similarity=0.380 Sum_probs=33.6
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhh
Q 002268 357 LAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENK 423 (944)
Q Consensus 357 le~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkeKEkdl~~Ksk~LkEkEks 423 (944)
+...|..++.++..++.++..+ |..+.+||+.|+.+.+.|..++..|..+.+.|..+++.
T Consensus 61 ~~~~~~~~e~e~~~~~~~~~~~-------e~rl~~~e~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~ 120 (508)
T PRK12705 61 LLRERNQQRQEARREREELQRE-------EERLVQKEEQLDARAEKLDNLENQLEEREKALSARELE 120 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555556666666555555 44566666666666666666666555555544444443
No 54
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=86.40 E-value=80 Score=37.66 Aligned_cols=57 Identities=26% Similarity=0.369 Sum_probs=43.0
Q ss_pred hhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhh
Q 002268 423 KLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSE 479 (944)
Q Consensus 423 sL~aeEK~le~ek~~L~~ekEel~~lK~dlEK~~a~~e~q~~qi~ee~e~Lkite~E 479 (944)
.|.+..++|+.-+..|.+=+.++..+...++.++.+++..+..+..-+++.......
T Consensus 282 ~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~ 338 (522)
T PF05701_consen 282 SLASAKKELEEAKKELEKAKEEASSLRASVESLRSELEKEKEELERLKEREKEASSE 338 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 366777778777888888888888888888888888887777777777766555543
No 55
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=85.06 E-value=74 Score=36.02 Aligned_cols=54 Identities=22% Similarity=0.354 Sum_probs=36.7
Q ss_pred hhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHH
Q 002268 394 HDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNI 447 (944)
Q Consensus 394 qaLe~k~~~lkeKEkdl~~Ksk~LkEkEksL~aeEK~le~ek~~L~~ekEel~~ 447 (944)
..|..++..+.++--++-.+.+.+.++=+++++....|..+-.+|-..+.+++.
T Consensus 30 ~El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~ 83 (294)
T COG1340 30 DELRKEASELAEKRDELNAKVRELREKAQELREERDEINEEVQELKEKRDEINA 83 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666667777777777777777777777777777777776666666666655543
No 56
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=83.82 E-value=69 Score=34.71 Aligned_cols=241 Identities=25% Similarity=0.330 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHH----HHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHH
Q 002268 441 EKEEVNIIKSDL----QKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKA 516 (944)
Q Consensus 441 ekEel~~lK~dl----EK~~a~~e~q~~qi~ee~e~Lkite~Er~E~~~Lq~eLKeEId~~R~Qke~L~kEae~Lk~eK~ 516 (944)
+|+++..|++-+ ++.+ +++.+-..+......+.... ......+..-.-.+|..+|.+-..+..|...|..+..
T Consensus 2 EK~eL~~LNdRla~YIekVr-~LE~~N~~Le~~i~~~~~~~--~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~ 78 (312)
T PF00038_consen 2 EKEELQSLNDRLASYIEKVR-FLEQENKRLESEIEELREKK--GEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEID 78 (312)
T ss_dssp CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH-----------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH-HHHHHhhhhHHHHHHHHhcc--cccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhh
Confidence 456666655543 3443 34444444544444444443 3444556677788888899888888888888888888
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHH---HHHHHHHhhhhhhhhhHHHHHHhhhhhhhhH
Q 002268 517 KFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERD---AMRDQHKRDVDSLNREREEFMNKMVHEHSEW 593 (944)
Q Consensus 517 kFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~---~~r~~~krelE~L~~ekEsF~~~M~hE~s~~ 593 (944)
+...+.+.+-.|-.........+. ++-..|+...+ ..+......+.+|.-+-.-.......|-..+
T Consensus 79 ~l~~e~~~~r~k~e~e~~~~~~le-----------~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~heeEi~~L 147 (312)
T PF00038_consen 79 NLKEELEDLRRKYEEELAERKDLE-----------EELESLRKDLDEETLARVDLENQIQSLKEELEFLKQNHEEEIEEL 147 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-----------HHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence 888877777555444433333322 23333333332 2344455566666655543333444555666
Q ss_pred HHHHHHHHHHhhhhhH-hhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHH
Q 002268 594 FTKIQQERADFLLGIE-MQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLE 672 (944)
Q Consensus 594 ~ek~q~Erad~l~d~E-mqkreLe~~i~~R~EE~E~~L~EREk~FEeek~~EL~~IN~lke~a~kE~E~v~lE~~rLe~E 672 (944)
-..++ ..+.-++. ....+|...|..-+.+.+.....--...+.--...+..|+.........+..++.|...+-..
T Consensus 148 ~~~~~---~~~~~e~~~~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~~~~~~~~~E~~~~r~~ 224 (312)
T PF00038_consen 148 REQIQ---SSVTVEVDQFRSSDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSSEELESAKEELKELRRQ 224 (312)
T ss_dssp STT-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccc---cccceeecccccccchhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccccccchhHhHHHHHHhh
Confidence 66665 33333333 456677777777777777666555555555555666667766666666777776666655555
Q ss_pred HHHhhhhhhhhhHHHHHHHhhHHHHH
Q 002268 673 RMEINMDRQRRDREWAELNNSIEELM 698 (944)
Q Consensus 673 r~Ei~~~ke~le~e~~Em~kdIeeL~ 698 (944)
-+.+...-..+...-..+.+.|.+|.
T Consensus 225 ~~~l~~el~~l~~~~~~Le~~l~~le 250 (312)
T PF00038_consen 225 IQSLQAELESLRAKNASLERQLRELE 250 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHhhhhhhccccchhhhhhhHHHHH
Confidence 44444444444444444444444433
No 57
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=83.66 E-value=63 Score=34.13 Aligned_cols=143 Identities=19% Similarity=0.286 Sum_probs=92.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHH
Q 002268 480 AGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQ 559 (944)
Q Consensus 480 r~E~~~Lq~eLKeEId~~R~Qke~L~kEae~Lk~eK~kFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~ 559 (944)
|..-+.|-.-||++|...|......-+...++.++-.+.-.--..+.+..++|++.+......+..|....
T Consensus 22 T~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k--------- 92 (201)
T PF13851_consen 22 TLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLK--------- 92 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 44566777889999999999999999999999999999998888899999999988887665544443322
Q ss_pred HHHHHHHHHHhhhhhhhhhHHHHH---HhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhh-HHHHHHHHHHHHhHHHHHHH
Q 002268 560 ERDAMRDQHKRDVDSLNREREEFM---NKMVHEHSEWFTKIQQERADFLLGIEMQKRDL-ENCIEKRREELESSFREREK 635 (944)
Q Consensus 560 Ek~~~r~~~krelE~L~~ekEsF~---~~M~hE~s~~~ek~q~Erad~l~d~EmqkreL-e~~i~~R~EE~E~~L~EREk 635 (944)
..+. ....++..|..+.+.+. .+++.||.+|..+-.. +++|+. ||..+ .+-++++...+...|.-|+.
T Consensus 93 --~rl~-~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~----~i~evq-Qk~~~kn~lLEkKl~~l~~~lE~kea 164 (201)
T PF13851_consen 93 --ARLK-ELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFES----AIQEVQ-QKTGLKNLLLEKKLQALSEQLEKKEA 164 (201)
T ss_pred --HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 23556666666666554 3444555555554442 233332 22222 33455566666666666665
Q ss_pred HHHH
Q 002268 636 AFEE 639 (944)
Q Consensus 636 ~FEe 639 (944)
.+.+
T Consensus 165 qL~e 168 (201)
T PF13851_consen 165 QLNE 168 (201)
T ss_pred HHHH
Confidence 5543
No 58
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=81.80 E-value=59 Score=35.34 Aligned_cols=77 Identities=26% Similarity=0.319 Sum_probs=55.6
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHHHHHHHHHHHH
Q 002268 628 SSFREREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQ 707 (944)
Q Consensus 628 ~~L~EREk~FEeek~~EL~~IN~lke~a~kE~E~v~lE~~rLe~Er~Ei~~~ke~le~e~~Em~kdIeeL~~ls~KLk~Q 707 (944)
..++.+-..|+.-+..-++.+.++...- +=+++..-|+..|..||+ ..-+++-.|+.||..|.+.=..++..
T Consensus 4 ~~ir~K~~~lek~k~~i~~e~~~~e~ee-~~L~e~~kE~~~L~~Er~-------~h~eeLrqI~~DIn~lE~iIkqa~~e 75 (230)
T PF10146_consen 4 KEIRNKTLELEKLKNEILQEVESLENEE-KCLEEYRKEMEELLQERM-------AHVEELRQINQDINTLENIIKQAESE 75 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577788888888888888888776654 455555555555555554 45567888899999999888888877
Q ss_pred HHHHH
Q 002268 708 RQLLH 712 (944)
Q Consensus 708 RE~~~ 712 (944)
|....
T Consensus 76 r~~~~ 80 (230)
T PF10146_consen 76 RNKRQ 80 (230)
T ss_pred HHHHH
Confidence 76643
No 59
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.69 E-value=1.6e+02 Score=37.48 Aligned_cols=57 Identities=21% Similarity=0.264 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHH
Q 002268 439 QKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELD 495 (944)
Q Consensus 439 ~~ekEel~~lK~dlEK~~a~~e~q~~qi~ee~e~Lkite~Er~E~~~Lq~eLKeEId 495 (944)
.+-++.+.+=.++|++-|-.+++|.++-.++.++.+--+.+|-+-.|++.+=|.+++
T Consensus 316 DKrkeNy~kGqaELerRRq~leeqqqreree~eqkEreE~ekkererqEqErk~qlE 372 (1118)
T KOG1029|consen 316 DKRKENYEKGQAELERRRQALEEQQQREREEVEQKEREEEEKKERERQEQERKAQLE 372 (1118)
T ss_pred hhhHHhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355778888899999999999999999999999999999888888887776665544
No 60
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=80.79 E-value=1.5e+02 Score=36.44 Aligned_cols=216 Identities=18% Similarity=0.199 Sum_probs=117.0
Q ss_pred hHhhhhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHHhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhH
Q 002268 254 EDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESN 333 (944)
Q Consensus 254 Ee~~~e~~~~l~~kEkeLEe~~~kie~~~~~Lk~ke~dl~~r~~~l~~rEe~~~~~~~~L~~KEkeLl~leEKL~aRE~~ 333 (944)
+....+..+.+..+++.|+++...|+.-...++.-...+..-...+...+.....++..+..+++=...|...=..- .
T Consensus 320 ~~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni--~ 397 (594)
T PF05667_consen 320 EDEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENI--A 397 (594)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH--H
Confidence 34445566666677777776666666665555555555555544444444444444444444443322221110000 2
Q ss_pred HHHHHHHHhHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHH
Q 002268 334 EIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVER 413 (944)
Q Consensus 334 eIQkLldeh~a~L~~Kk~eFElEle~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkeKEkdl~~K 413 (944)
.+|.+++. -..+..++..+.+..|.-+.++++.=+.... -++-..-.+...++........-
T Consensus 398 kL~~~v~~----s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~--------------~~~~e~~~~~~~ik~~r~~~k~~ 459 (594)
T PF05667_consen 398 KLQALVEA----SEQRLVELAQQWEKHRAPLIEEYRRLKEKAS--------------NRESESKQKLQEIKELREEIKEI 459 (594)
T ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh--------------hcchHHHHHHHHHHHHHHHHHHH
Confidence 22222222 2334445555555555555555443222222 22222223334444444444444
Q ss_pred hhhhHHHHhhhHHHHHHhHHH---------HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHH
Q 002268 414 SHLLEEKENKLIAFEKEADLK---------KSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELS 484 (944)
Q Consensus 414 sk~LkEkEksL~aeEK~le~e---------k~~L~~ekEel~~lK~dlEK~~a~~e~q~~qi~ee~e~Lkite~Er~E~~ 484 (944)
...++.|+...+...+.++.- ...++.=.-.|.+-+.||.|++..+-.=.++|+.-..+|.-|-.-.+|++
T Consensus 460 ~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dEli 539 (594)
T PF05667_consen 460 EEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDELI 539 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 444444444443333333221 23455556678888999999999999999999999999999998888887
Q ss_pred HHHHH
Q 002268 485 VLEIK 489 (944)
Q Consensus 485 ~Lq~e 489 (944)
-=.++
T Consensus 540 frdAK 544 (594)
T PF05667_consen 540 FRDAK 544 (594)
T ss_pred HHHhh
Confidence 76666
No 61
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=80.51 E-value=1.7 Score=52.67 Aligned_cols=69 Identities=30% Similarity=0.286 Sum_probs=0.0
Q ss_pred hhhhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHHhhhHHHHHHHHHHHHHhHHhHHHHHH
Q 002268 256 HILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQE 325 (944)
Q Consensus 256 ~~~e~~~~l~~kEkeLEe~~~kie~~~~~Lk~ke~dl~~r~~~l~~rEe~~~~~~~~L~~KEkeLl~leE 325 (944)
|+..-.....+...++..++... .....|+++...|..++..+-.-+.++..++.....-|.++..|.-
T Consensus 258 ~i~~LE~en~~l~~Elk~Lr~~~-~n~elLeEe~~sLq~kl~~~E~~~~el~~lq~e~~~Le~el~sW~s 326 (722)
T PF05557_consen 258 HIRELEKENRRLREELKHLRQSQ-ENVELLEEEKRSLQRKLERLEELEEELAELQLENEKLEDELNSWES 326 (722)
T ss_dssp ----------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443322 3356777888888888887777777777776666666666666643
No 62
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=79.27 E-value=2.3e+02 Score=37.64 Aligned_cols=338 Identities=16% Similarity=0.182 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhhhhhhhhHhhhhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHHhhhHHHHHHHHHHHHH
Q 002268 236 LQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQK 315 (944)
Q Consensus 236 Lqe~eerl~e~q~~lNqREe~~~e~~~~l~~kEkeLEe~~~kie~~~~~Lk~ke~dl~~r~~~l~~rEe~~~~~~~~L~~ 315 (944)
+++...|+.-.--...+-+.++.=-.+..+.+|....++-.-+..++..+.-+.-.+.-.+.. .=..+......+..
T Consensus 269 I~~~~~rv~~L~e~~sek~~~~k~~e~ek~~lE~~k~~al~fL~kenel~~~~~~~~q~~~~~---~~~ki~~~~~~~~~ 345 (1293)
T KOG0996|consen 269 IEELMRRVERLNEDRSEKENRVKLVEKEKKALEGPKNEALEFLKKENELFRKKNKLCQYILYE---SRAKIAEMQEELEK 345 (1293)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Q ss_pred hHHhHHHHHHHHhhhhhHHHHHHHHHhHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhh
Q 002268 316 KEQKLLVSQETLASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHD 395 (944)
Q Consensus 316 KEkeLl~leEKL~aRE~~eIQkLldeh~a~L~~Kk~eFElEle~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqa 395 (944)
-+.+|...-+|+..-...+.++.-+- .....+-..++.+++.+.-.++..=-..-.+++-.++|.=.++.|-+..
T Consensus 346 ~~e~lk~~~ek~~~e~~~~~~k~e~~-----~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK~~~~k~kKleke 420 (1293)
T KOG0996|consen 346 IEEGLKDENEKFDIESNEEVEKNEAV-----KKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLKRLTSKIKKLEKE 420 (1293)
T ss_pred HHhHHHHHHHHhhhhhhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHHhhhhhHHHHHHHHHHHh
Q 002268 396 LEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNI----IKSDLQKSLSSLDEKKKQVNCAKD 471 (944)
Q Consensus 396 Le~k~~~lkeKEkdl~~Ksk~LkEkEksL~aeEK~le~ek~~L~~ekEel~~----lK~dlEK~~a~~e~q~~qi~ee~e 471 (944)
+++-.++..+.++-.+.=....-+-...+...++.++.+...|..-+.++.. +..++.++...+..-..++.+++.
T Consensus 421 ~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel~~~~~~~n~~~~ 500 (1293)
T KOG0996|consen 421 IEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKELMPLLKQVNEARS 500 (1293)
T ss_pred HHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 002268 472 KLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLK 551 (944)
Q Consensus 472 ~Lkite~Er~E~~~Lq~eLKeEId~~R~Qke~L~kEae~Lk~eK~kFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~ 551 (944)
.+.+.++|=.-|+-.+..+..-.+.+-..-.-++...++.+..--....+...+--+..++.+++.....+=..+...++
T Consensus 501 e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~~~~~e~~~~l~~~k~~l~~~k~e~~~~~k~l~~~~~e~~~~~~~~~ 580 (1293)
T KOG0996|consen 501 ELDVAESELDILLSRHETGLKKVEELKGKLLASSESLKEKKTELDDLKEELPSLKQELKEKEKELPKLRKEERNLKSQLN 580 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q ss_pred hhhhhhHHHHHHHHHHHHhh--hhhhhhhHHH
Q 002268 552 DERDSLRQERDAMRDQHKRD--VDSLNREREE 581 (944)
Q Consensus 552 ~E~erLK~Ek~~~r~~~kre--lE~L~~ekEs 581 (944)
.=+.++-.-+..|...-.+. +.+|.+.+++
T Consensus 581 ~~rqrveE~ks~~~~~~s~~kVl~al~r~kes 612 (1293)
T KOG0996|consen 581 KLRQRVEEAKSSLSSSRSRNKVLDALMRLKES 612 (1293)
T ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHc
No 63
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=77.12 E-value=65 Score=30.57 Aligned_cols=89 Identities=26% Similarity=0.292 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHH
Q 002268 364 AEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKE 443 (944)
Q Consensus 364 ~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkeKEkdl~~Ksk~LkEkEksL~aeEK~le~ek~~L~~ekE 443 (944)
+...|..|+.+...++..+..++..|.++++.|....-.+..-=++-+. ...-..+..+.+......--.
T Consensus 12 ~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~flken~~----------k~~rA~k~a~~e~k~~~~k~~ 81 (126)
T PF13863_consen 12 VQLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDKFLKENEA----------KRERAEKRAEEEKKKKEEKEA 81 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH----------HHHHHHHHHHHHHHHHHHHHH
Confidence 5567788888888888888888888888888888777666544333333 333334444444444444445
Q ss_pred HHHHHHHHHHHhhhhhHHH
Q 002268 444 EVNIIKSDLQKSLSSLDEK 462 (944)
Q Consensus 444 el~~lK~dlEK~~a~~e~q 462 (944)
+|..+..+|..+.+.+..-
T Consensus 82 ei~~l~~~l~~l~~~~~k~ 100 (126)
T PF13863_consen 82 EIKKLKAELEELKSEISKL 100 (126)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5666666666655554433
No 64
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=76.48 E-value=1.4e+02 Score=33.56 Aligned_cols=30 Identities=27% Similarity=0.289 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHhHHhhHHHHHHHHHHHHHH
Q 002268 493 ELDVVRAQKLELMVETDKLQLEKAKFEAEW 522 (944)
Q Consensus 493 EId~~R~Qke~L~kEae~Lk~eK~kFE~EW 522 (944)
+|+.++.+...+....+.+..++..+..+=
T Consensus 231 ~l~el~~el~~l~~~i~~~~~~k~~l~~eI 260 (325)
T PF08317_consen 231 ELAELQEELEELEEKIEELEEQKQELLAEI 260 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333333
No 65
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=75.77 E-value=1.5e+02 Score=33.62 Aligned_cols=167 Identities=23% Similarity=0.203 Sum_probs=110.7
Q ss_pred HHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhh
Q 002268 396 LEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEA 475 (944)
Q Consensus 396 Le~k~~~lkeKEkdl~~Ksk~LkEkEksL~aeEK~le~ek~~L~~ekEel~~lK~dlEK~~a~~e~q~~qi~ee~e~Lki 475 (944)
|-+...++..|.-=++=+++-++.-...|...-..+......|.++-+-+..+...+....+.+..+..++......+..
T Consensus 121 lvK~~aRl~ak~~WYeWR~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~ 200 (312)
T smart00787 121 LVKTFARLEAKKMWYEWRMKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELED 200 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Confidence 34455566666666666776666655555555555555555555555555555555555555555544444443333322
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 002268 476 MKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERD 555 (944)
Q Consensus 476 te~Er~E~~~Lq~eLKeEId~~R~Qke~L~kEae~Lk~eK~kFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~e 555 (944)
- +..++..+..+|++ .=.+-....++.++++.+...-...++..-+++.+++.+.......++....|=-.|-.
T Consensus 201 ~--d~~eL~~lk~~l~~----~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~ 274 (312)
T smart00787 201 C--DPTELDRAKEKLKK----LLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIE 274 (312)
T ss_pred C--CHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 1 24556555554444 44445556667888999999999999999999999999998888888888889899999
Q ss_pred hhHHHHHHHHHHH
Q 002268 556 SLRQERDAMRDQH 568 (944)
Q Consensus 556 rLK~Ek~~~r~~~ 568 (944)
+|+..-..++..+
T Consensus 275 ~Lk~~~~~Le~l~ 287 (312)
T smart00787 275 KLKEQLKLLQSLT 287 (312)
T ss_pred HHHHHHHHHHHHh
Confidence 9999888887654
No 66
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=75.64 E-value=94 Score=31.33 Aligned_cols=90 Identities=19% Similarity=0.289 Sum_probs=66.5
Q ss_pred HHhcchhHHhhhHHHHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHhHHHHHHHHHHhhhhhhhhHhhhhhH
Q 002268 182 EANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKL 261 (944)
Q Consensus 182 Ea~Rk~s~~erkL~evEaRE~~LrrerlSf~~e~ea~e~~~~~qre~L~eweK~Lqe~eerl~e~q~~lNqREe~~~e~~ 261 (944)
.|.-+...++-++++++.+-..+-.++.||..=....|.++..-...|.+-...+.++..+..... ...
T Consensus 11 ~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E-----------~l~ 79 (143)
T PF12718_consen 11 NAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAE-----------QLN 79 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH-----------HHH
Confidence 344455667777888888888888888888888888888888888888888888888887776554 333
Q ss_pred HHHhHhHHHHHHHhhcHHHHH
Q 002268 262 QELSRKEKELEASRANVEEKF 282 (944)
Q Consensus 262 ~~l~~kEkeLEe~~~kie~~~ 282 (944)
+-+..+|.+|+.+.+++..+.
T Consensus 80 rriq~LEeele~ae~~L~e~~ 100 (143)
T PF12718_consen 80 RRIQLLEEELEEAEKKLKETT 100 (143)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 446666777776666655443
No 67
>PRK09039 hypothetical protein; Validated
Probab=74.48 E-value=1.6e+02 Score=33.49 Aligned_cols=115 Identities=16% Similarity=0.211 Sum_probs=74.2
Q ss_pred hhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhHH
Q 002268 116 LKKTLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQ 195 (944)
Q Consensus 116 LkKALgvEKqCVadLEKAL~emr~E~AeiK~~sesKlaeA~aLv~~~eeKs~evE~Kl~aAea~~AEa~Rk~s~~erkL~ 195 (944)
|=-.|+.+..+-++|+-.|.+|+..+.. +...-+.+....++...-..+++..+....+.+++..-.++++.+...
T Consensus 65 L~e~L~le~~~~~~l~~~l~~l~~~l~~----a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~ 140 (343)
T PRK09039 65 LADLLSLERQGNQDLQDSVANLRASLSA----AEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVE 140 (343)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHH----HHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 7778999999999999999999998882 233333333333322222335666666666666666666777777777
Q ss_pred HHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHH
Q 002268 196 EVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKK 234 (944)
Q Consensus 196 evEaRE~~LrrerlSf~~e~ea~e~~~~~qre~L~eweK 234 (944)
-+-+.=.+||.++-+..++..+.+.....++..+.+.+.
T Consensus 141 ~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~ 179 (343)
T PRK09039 141 LLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGR 179 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777766666666655444433333333
No 68
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=74.34 E-value=24 Score=43.24 Aligned_cols=22 Identities=32% Similarity=0.646 Sum_probs=15.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHH
Q 002268 619 IEKRREELESSFREREKAFEEE 640 (944)
Q Consensus 619 i~~R~EE~E~~L~EREk~FEee 640 (944)
..+|..-+--.+..+-..|-+-
T Consensus 618 ~ekr~~RLkevf~~ks~eFr~a 639 (722)
T PF05557_consen 618 AEKRNQRLKEVFKAKSQEFREA 639 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666778888888765
No 69
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=71.13 E-value=1.5e+02 Score=32.16 Aligned_cols=130 Identities=22% Similarity=0.322 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHh
Q 002268 444 EVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWE 523 (944)
Q Consensus 444 el~~lK~dlEK~~a~~e~q~~qi~ee~e~Lkite~Er~E~~~Lq~eLKeEId~~R~Qke~L~kEae~Lk~eK~kFE~EWE 523 (944)
+|-.|+..+--.++.+.....++..-...+..- . -|++.|-.+-.-...|++-|+..-..++.|.-
T Consensus 32 Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K---~-----------~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~ 97 (202)
T PF06818_consen 32 EIVSLRAQLRELRAELRNKESQIQELQDSLRTK---Q-----------LELEVCENELQRKKNEAELLREKLGQLEAELA 97 (202)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh---h-----------HhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHH
Confidence 455555555555555555555555444433221 1 24444444444455555555555555555554
Q ss_pred hhHHHHHHH---HHHHH------HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhhhhhhhHH
Q 002268 524 MIDEKREEL---RKEAE------RVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMVHEHSEWF 594 (944)
Q Consensus 524 ~LDEKR~el---~KEa~------~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~M~hE~s~~~ 594 (944)
.|..--..+ ....- ....++.. -......|+.+-+.+ +.+|-..+..++.|+...++||..|.
T Consensus 98 ~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~----~~~~~~~l~~e~erL----~aeL~~er~~~e~q~~~Fe~ER~~W~ 169 (202)
T PF06818_consen 98 ELREELACAGRLKRQCQLLSESDEAKAQRQA----GEDELGSLRREVERL----RAELQRERQRREEQRSSFEQERRTWQ 169 (202)
T ss_pred HHHHHHHhhccchhhhccccccchhHHhhcc----ccccchhHHHHHHHH----HHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 443333332 00000 00000000 011223333333333 34555667788899999999999997
Q ss_pred H
Q 002268 595 T 595 (944)
Q Consensus 595 e 595 (944)
+
T Consensus 170 e 170 (202)
T PF06818_consen 170 E 170 (202)
T ss_pred H
Confidence 4
No 70
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=70.94 E-value=3.6e+02 Score=36.02 Aligned_cols=28 Identities=25% Similarity=0.207 Sum_probs=20.9
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHh
Q 002268 686 EWAELNNSIEELMVQRQKLEEQRQLLHAD 714 (944)
Q Consensus 686 e~~Em~kdIeeL~~ls~KLk~QRE~~~~e 714 (944)
--.|+++ +-+|..++.+|...|.....+
T Consensus 1016 kE~EkrK-v~~L~qlr~~l~k~~l~~q~~ 1043 (1317)
T KOG0612|consen 1016 KEKEKRK-VMELSQLRTKLNKLRLKNQKE 1043 (1317)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHhhhhHHH
Confidence 3457788 889999999988887655544
No 71
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=70.64 E-value=2.7e+02 Score=34.34 Aligned_cols=71 Identities=11% Similarity=0.059 Sum_probs=37.3
Q ss_pred hhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHH--------hhhHHHHhhhhhHHHHHHhHhhhhhhh
Q 002268 147 AADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSA--------ERKLQEVVAREDDLSRRIASFKADCEE 217 (944)
Q Consensus 147 ~sesKlaeA~aLv~~~eeKs~evE~Kl~aAea~~AEa~Rk~s~~--------erkL~evEaRE~~LrrerlSf~~e~ea 217 (944)
..+.|...+..-..-+.+...++..+|.+|++.++.--+++... ..+|.++..+=...+-++....+-...
T Consensus 184 ~~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~ 262 (754)
T TIGR01005 184 QGAAKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTADS 262 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555566666666677777777776666655544332 134444444444444444444333333
No 72
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=69.78 E-value=2.7e+02 Score=34.01 Aligned_cols=24 Identities=4% Similarity=0.041 Sum_probs=15.0
Q ss_pred ccccCCCccccCCCCcHHHHHHHHHccC
Q 002268 9 LAITPSSRVLQSPLSDESIWKRLKEAGL 36 (944)
Q Consensus 9 l~~~~~~rv~~~~~~d~~iWkr~~eaG~ 36 (944)
+++-.|. ++.|-+++-..++-+=|
T Consensus 30 ~~~i~G~----Ng~GKttll~ai~~~Ly 53 (650)
T TIGR03185 30 IILIGGL----NGAGKTTLLDAIQLALY 53 (650)
T ss_pred EEEEECC----CCCCHHHHHHHHHHHhc
Confidence 5555555 66777777777665433
No 73
>PRK12705 hypothetical protein; Provisional
Probab=69.48 E-value=2.6e+02 Score=33.97 Aligned_cols=60 Identities=23% Similarity=0.249 Sum_probs=26.7
Q ss_pred hhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHH
Q 002268 350 QSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVER 413 (944)
Q Consensus 350 k~eFElEle~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkeKEkdl~~K 413 (944)
+.++|-|+...|..+... ..-+.+||-.+..+.+.+.+++..|+.+...+..++.++..+
T Consensus 65 ~~~~e~e~~~~~~~~~~~----e~rl~~~e~~l~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~ 124 (508)
T PRK12705 65 RNQQRQEARREREELQRE----EERLVQKEEQLDARAEKLDNLENQLEEREKALSARELELEEL 124 (508)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555444332 222444444444444444444444444444444444444443
No 74
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=69.25 E-value=90 Score=33.93 Aligned_cols=79 Identities=22% Similarity=0.292 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHH
Q 002268 443 EEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAE 521 (944)
Q Consensus 443 Eel~~lK~dlEK~~a~~e~q~~qi~ee~e~Lkite~Er~E~~~Lq~eLKeEId~~R~Qke~L~kEae~Lk~eK~kFE~E 521 (944)
+.|..+..+..+....+......+..--+++++.++++..+-..+.++.+++..++.+..-..+|-..|.++...++.+
T Consensus 12 ~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~ 90 (246)
T PF00769_consen 12 ERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAE 90 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777888888889999999999999999999999999888888888888777777666655555555444444333
No 75
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=68.85 E-value=56 Score=32.30 Aligned_cols=76 Identities=25% Similarity=0.300 Sum_probs=54.6
Q ss_pred HHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhh
Q 002268 396 LEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLE 474 (944)
Q Consensus 396 Le~k~~~lkeKEkdl~~Ksk~LkEkEksL~aeEK~le~ek~~L~~ekEel~~lK~dlEK~~a~~e~q~~qi~ee~e~Lk 474 (944)
|.....+|+++-.++..++..+..++..+...-+ .....+...++++..++.-++-.++....+.++...+.++|+
T Consensus 71 l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~---~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~E~~kLk 146 (151)
T PF11559_consen 71 LQNDVERLKEQLEELERELASAEEKERQLQKQLK---SLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKEREIEKLK 146 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555556666555554444 447788889999999999999999999999999888888776
No 76
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=67.56 E-value=2.8e+02 Score=33.62 Aligned_cols=70 Identities=21% Similarity=0.304 Sum_probs=42.6
Q ss_pred HhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhh
Q 002268 405 DKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLE 474 (944)
Q Consensus 405 eKEkdl~~Ksk~LkEkEksL~aeEK~le~ek~~L~~ekEel~~lK~dlEK~~a~~e~q~~qi~ee~e~Lk 474 (944)
+++++++.+-.-...+|..-....+..+..+.++......+...+...++-...++.+...+.++++..+
T Consensus 189 ~~dk~~~~rk~m~D~KEreaeea~k~aq~~K~ea~qkq~~~~k~kkkae~~q~e~dkqr~~ae~kqqeak 258 (489)
T PF05262_consen 189 DKDKGIDKRKDMVDIKEREAEEAAKRAQEAKKEAQQKQKEADKEKKKAEKKQQELDKQRDEAEQKQQEAK 258 (489)
T ss_pred ccccChhhhhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4455555555555556666666666666666666666666666666666666666666555555555433
No 77
>PLN03188 kinesin-12 family protein; Provisional
Probab=66.00 E-value=2e+02 Score=38.34 Aligned_cols=151 Identities=25% Similarity=0.299 Sum_probs=88.2
Q ss_pred HhhHhhhhhhhhHHHHHHhHHHHHHH-HH------hhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHH
Q 002268 111 KREESLKKTLGVEKECIASLEKAVHE-IR------AESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEA 183 (944)
Q Consensus 111 KREEnLkKALgvEKqCVadLEKAL~e-mr------~E~AeiK~~sesKlaeA~aLv~~~eeKs~evE~Kl~aAea~~AEa 183 (944)
-+-|.|+--|..||.|...|.-||+- |. +-||+.-=..-.=|+--+.+++||. |-|..||.|
T Consensus 1079 ~l~Ekl~~EL~~eK~c~eel~~a~q~am~ghar~~e~ya~l~ek~~~ll~~hr~i~egi~------dvkkaaaka----- 1147 (1320)
T PLN03188 1079 ALAEKQKHELDTEKRCAEELKEAMQMAMEGHARMLEQYADLEEKHIQLLARHRRIQEGID------DVKKAAARA----- 1147 (1320)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHh-----
Confidence 34578999999999999999999963 32 2333332222222333333333332 223333322
Q ss_pred hcchhHHhhhHHHHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHhHHH-----H---------HHHHHHhhh
Q 002268 184 NRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQE-----H---------ERLLDAQTL 249 (944)
Q Consensus 184 ~Rk~s~~erkL~evEaRE~~LrrerlSf~~e~ea~e~~~~~qre~L~eweK~Lqe~-----e---------erl~e~q~~ 249 (944)
.+|.. + -|=+.+|.+|.-+...+-.++|..|++=-|.||.- + =||-++..-
T Consensus 1148 g~kg~------------~---~~f~~alaae~s~l~~ereker~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea 1212 (1320)
T PLN03188 1148 GVRGA------------E---SKFINALAAEISALKVEREKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEA 1212 (1320)
T ss_pred ccccc------------h---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 22211 1 23344555555555555666677766666666532 1 244444444
Q ss_pred hhhhhHhhhhhHHHHhHhHHHHHHHhhcHHHHHHHHhh
Q 002268 250 LNEREDHILSKLQELSRKEKELEASRANVEEKFKALNE 287 (944)
Q Consensus 250 lNqREe~~~e~~~~l~~kEkeLEe~~~kie~~~~~Lk~ 287 (944)
+.-=+++++.-.++-...-|.++.+++|-+.+..+|+.
T Consensus 1213 ~~~a~~r~~~~eqe~~~~~k~~~klkrkh~~e~~t~~q 1250 (1320)
T PLN03188 1213 LTVAQKRAMDAEQEAAEAYKQIDKLKRKHENEISTLNQ 1250 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556777777777777778888888888888777776
No 78
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=65.20 E-value=2.3e+02 Score=31.47 Aligned_cols=53 Identities=21% Similarity=0.300 Sum_probs=33.3
Q ss_pred CCCCCCccc---ccCCCccccCCCCcHHHHHHHHHccCChHHHhhhcHHHHHHHHHHHHHHHhhhhh
Q 002268 2 ASPSSGRLA---ITPSSRVLQSPLSDESIWKRLKEAGLDEVSIKRRDKAALIAYIAKLETEIFEHQH 65 (944)
Q Consensus 2 ~~p~~~~l~---~~~~~rv~~~~~~d~~iWkr~~eaG~de~s~~rrD~~aLia~IskLE~ElydYQy 65 (944)
.+|..|.++ |..|+.|-.+++= +.+|-..+ ..+...|.+.+..|...+..++-
T Consensus 47 ~~~~~G~v~~i~V~eG~~V~kG~~L----------~~ld~~~~-~~~l~~l~~~~~~l~a~~~~l~~ 102 (423)
T TIGR01843 47 QHLEGGIVREILVREGDRVKAGQVL----------VELDATDV-EADAAELESQVLRLEAEVARLRA 102 (423)
T ss_pred ccCCCcEEEEEEeCCCCEecCCCeE----------EEEccchh-hhHHHHHHHHHHHHHHHHHHHHH
Confidence 356678776 8899988644421 12344444 34667778888888877766543
No 79
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=63.13 E-value=2.8e+02 Score=31.87 Aligned_cols=40 Identities=20% Similarity=0.375 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhhHH
Q 002268 693 SIEELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLK 732 (944)
Q Consensus 693 dIeeL~~ls~KLk~QRE~~~~eRe~f~~~vE~lK~ckncg 732 (944)
|||.|-+=.+-|+.+=.++..|++=...-|-+||+.=+|+
T Consensus 190 DIDaLi~ENRyL~erl~q~qeE~~l~k~~i~KYK~~le~k 229 (319)
T PF09789_consen 190 DIDALIMENRYLKERLKQLQEEKELLKQTINKYKSALERK 229 (319)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 8999999999999999999999999999999999876664
No 80
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=62.43 E-value=2.9e+02 Score=31.75 Aligned_cols=29 Identities=28% Similarity=0.478 Sum_probs=12.5
Q ss_pred hhhhhhhhhHHHHHHhhhhhhhhHHHHHH
Q 002268 570 RDVDSLNREREEFMNKMVHEHSEWFTKIQ 598 (944)
Q Consensus 570 relE~L~~ekEsF~~~M~hE~s~~~ek~q 598 (944)
+.+..|..+|-...+.|++|+.-++.+++
T Consensus 113 rkl~qLr~EK~~lE~~Le~EqE~~V~kL~ 141 (310)
T PF09755_consen 113 RKLNQLRQEKVELENQLEQEQEYLVNKLQ 141 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 33444444444444444444444444333
No 81
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=61.50 E-value=5.4e+02 Score=34.59 Aligned_cols=118 Identities=24% Similarity=0.235 Sum_probs=74.1
Q ss_pred hhhhhhhhhhhhhhhhhhhHHHHHHHH--HHHHHHHhhhhhhhhhHHHHHHHhhHhhhhhhhhHHHHHHhHHHHHHHHHh
Q 002268 62 EHQHHMGLLILEKKELASKYEQIKASA--EAAELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRA 139 (944)
Q Consensus 62 dYQynMGLLLiEkKEwtSK~eel~qa~--~eae~~lKREqaahl~ALsEaeKREEnLkKALgvEKqCVadLEKAL~emr~ 139 (944)
|=-|.+|.|- .-|+ |+. +.+ ..|..... .--|++.+.|=.-|.-.+..=..=++.|+..+..+..
T Consensus 711 dG~~r~G~l~---G~~~-k~~---a~~IG~~aR~~~R------~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~ 777 (1353)
T TIGR02680 711 DGRFRLGVLR---GAWA-KPA---AEYIGAAARERAR------LRRIAELDARLAAVDDELAELARELRALGARQRALAD 777 (1353)
T ss_pred CCceeeeeee---cccC-Ccc---hhHhhHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356788775 7788 554 222 12222222 2335556666666777777766777788888888888
Q ss_pred hhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhH
Q 002268 140 ESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKL 194 (944)
Q Consensus 140 E~AeiK~~sesKlaeA~aLv~~~eeKs~evE~Kl~aAea~~AEa~Rk~s~~erkL 194 (944)
+.+. |.++.-|..|+..+..+......+...+..|...++.+-+....+.+.+
T Consensus 778 e~~~--~Ps~~dL~~A~~~l~~A~~~~~~a~~~l~~a~~~l~~a~~~~~~a~~~l 830 (1353)
T TIGR02680 778 ELAG--APSDRSLRAAHRRAAEAERQAESAERELARAARKAAAAAAAWKQARREL 830 (1353)
T ss_pred HHHh--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777 7777788888888777766666666666655555555554444444443
No 82
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=61.37 E-value=1.3e+02 Score=33.92 Aligned_cols=16 Identities=25% Similarity=0.497 Sum_probs=8.8
Q ss_pred HHHHHHHhhHHHHHHH
Q 002268 685 REWAELNNSIEELMVQ 700 (944)
Q Consensus 685 ~e~~Em~kdIeeL~~l 700 (944)
-.|.||+-=.....-|
T Consensus 166 V~W~EINAA~Gq~~LL 181 (314)
T PF04111_consen 166 VEWNEINAAWGQTALL 181 (314)
T ss_dssp --HHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHH
Confidence 3688887666554433
No 83
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=59.24 E-value=2.1e+02 Score=29.22 Aligned_cols=88 Identities=22% Similarity=0.319 Sum_probs=63.9
Q ss_pred HHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 002268 468 CAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVS 547 (944)
Q Consensus 468 ee~e~Lkite~Er~E~~~Lq~eLKeEId~~R~Qke~L~kEae~Lk~eK~kFE~EWE~LDEKR~el~KEa~~I~eEre~le 547 (944)
+-.+.|+.++.+.+=+-.-=--|--+++.....++.+..+++.-+.+-..++.+-+.+...+..|.-|+..+..+|+.|.
T Consensus 7 ~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~ 86 (140)
T PF10473_consen 7 HVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLD 86 (140)
T ss_pred HHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555554444332222345567788888888999999999999999999999999999999999999997777776
Q ss_pred Hhhhhhhh
Q 002268 548 KSLKDERD 555 (944)
Q Consensus 548 k~~~~E~e 555 (944)
+.+.....
T Consensus 87 k~lq~~q~ 94 (140)
T PF10473_consen 87 KELQKKQE 94 (140)
T ss_pred HHHHHHHH
Confidence 66554333
No 84
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=58.94 E-value=6e+02 Score=34.29 Aligned_cols=204 Identities=20% Similarity=0.243 Sum_probs=103.2
Q ss_pred HHHHHhchHHHHHHhHHHHHHHHHHhhhhhhhhHhhhhhHHHHhHh----HHHHHHHhhcHHHHHHHHhhhhhhhhHhHH
Q 002268 222 IIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRK----EKELEASRANVEEKFKALNEEKSNLDLTLV 297 (944)
Q Consensus 222 ~~~qre~L~eweK~Lqe~eerl~e~q~~lNqREe~~~e~~~~l~~k----EkeLEe~~~kie~~~~~Lk~ke~dl~~r~~ 297 (944)
|..--.+|..-+-+|....--+.-+.. |-++-.++++....++.. ..-|+++.......-.+++.-..+|...-.
T Consensus 1520 I~e~v~sL~nVd~IL~~T~~di~ra~~-L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~ 1598 (1758)
T KOG0994|consen 1520 IQERVASLPNVDAILSRTKGDIARAEN-LQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQ 1598 (1758)
T ss_pred HHHHHHhcccHHHHHHhhhhhHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 333445555555555554443333332 334444555444443332 334566666666666666666666655555
Q ss_pred HHhhhHHHHHHHH-------HHHHHhHHhHHHHHHHH--hhhhhHHHHHHHHHhHHHHhhhhhhHHHHHHHHhhhHHHHH
Q 002268 298 SLLKREEAVIERE-------ASLQKKEQKLLVSQETL--ASKESNEIQKIIANHESALRVKQSEFEAELAIKYKLAEDEI 368 (944)
Q Consensus 298 ~l~~rEe~~~~~~-------~~L~~KEkeLl~leEKL--~aRE~~eIQkLldeh~a~L~~Kk~eFElEle~krKs~eeEl 368 (944)
.|+.-.+++...+ ..|...|.-+..|.-+. ++++-..|+++.+--...--.-++.|+ .|....+.++.=+
T Consensus 1599 ~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~-~lq~~~~~~~~l~ 1677 (1758)
T KOG0994|consen 1599 LLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLE-ILQKYYELVDRLL 1677 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 5554444433333 44444444444444443 356677888887765554444555666 6776666666666
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHhh----hhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHh
Q 002268 369 EKKRRAWELRDLDLGQREESLLER----EHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEA 431 (944)
Q Consensus 369 e~K~~~~E~rEvel~h~Eekl~kR----EqaLe~k~~~lkeKEkdl~~Ksk~LkEkEksL~aeEK~l 431 (944)
+.|..... .-..+=++|..+ =.+-+.++..|++.|-.+.....+|.-+...|--.++++
T Consensus 1678 ~~r~~g~~----~ar~rAe~L~~eA~~Ll~~a~~kl~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~ 1740 (1758)
T KOG0994|consen 1678 EKRMEGSQ----AARERAEQLRTEAEKLLGQANEKLDRLKDLELEYLRNEQALEDKAAELAGLEKRV 1740 (1758)
T ss_pred HHHhhcch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHH
Confidence 55543221 111111222221 123344556666666555555555555555555444444
No 85
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=58.13 E-value=2.6e+02 Score=32.43 Aligned_cols=16 Identities=19% Similarity=-0.070 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHh
Q 002268 46 KAALIAYIAKLETEIF 61 (944)
Q Consensus 46 ~~aLia~IskLE~Ely 61 (944)
..+|-+.+++|++++.
T Consensus 106 ~~~~~~~~~rL~a~~~ 121 (457)
T TIGR01000 106 LDNLKDQKKSLDTLKQ 121 (457)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4566677777776653
No 86
>PRK09039 hypothetical protein; Validated
Probab=57.54 E-value=3.4e+02 Score=31.00 Aligned_cols=51 Identities=14% Similarity=0.113 Sum_probs=33.3
Q ss_pred HHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHH
Q 002268 465 QVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEK 515 (944)
Q Consensus 465 qi~ee~e~Lkite~Er~E~~~Lq~eLKeEId~~R~Qke~L~kEae~Lk~eK 515 (944)
++..-...|..++..-.+-..-=.-|+++|+.+|.|.-.|..+.+.++++-
T Consensus 117 ~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~ 167 (343)
T PRK09039 117 RAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRD 167 (343)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344666666666666666667778888888888666666666655544
No 87
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=57.29 E-value=2.9e+02 Score=33.32 Aligned_cols=109 Identities=20% Similarity=0.239 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhh
Q 002268 492 EELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRD 571 (944)
Q Consensus 492 eEId~~R~Qke~L~kEae~Lk~eK~kFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~kre 571 (944)
.+++..|+.-+++..|++.|+++-..-+++=..+.-|-.+++--+++...|...+. .+...|....+.-+.+++..
T Consensus 347 sqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~----E~n~~l~knq~vw~~kl~~~ 422 (493)
T KOG0804|consen 347 SQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEER----EENKKLIKNQDVWRGKLKEL 422 (493)
T ss_pred HHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHHHHHH
Confidence 58899999999999999999998888888888888888888777777776655544 44555666666666666665
Q ss_pred hhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHH
Q 002268 572 VDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRR 623 (944)
Q Consensus 572 lE~L~~ekEsF~~~M~hE~s~~~ek~q~Erad~l~d~EmqkreLe~~i~~R~ 623 (944)
-+.++.+.-+--. ++.|++-|=|+|=.-|...+
T Consensus 423 ~e~~~~~~~s~d~-------------------~I~dLqEQlrDlmf~le~qq 455 (493)
T KOG0804|consen 423 EEREKEALGSKDE-------------------KITDLQEQLRDLMFFLEAQQ 455 (493)
T ss_pred HHHHHHHHHHHHH-------------------HHHHHHHHHHhHheehhhhh
Confidence 5555544433322 33467777666655554443
No 88
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=57.04 E-value=1.6e+02 Score=33.26 Aligned_cols=34 Identities=29% Similarity=0.305 Sum_probs=22.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHH
Q 002268 479 EAGELSVLEIKLKEELDVVRAQKLELMVETDKLQ 512 (944)
Q Consensus 479 Er~E~~~Lq~eLKeEId~~R~Qke~L~kEae~Lk 512 (944)
+.+.+..-...+.++.+.+-.|........+.|+
T Consensus 100 ~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ 133 (314)
T PF04111_consen 100 EYNELQLELIEFQEERDSLKNQYEYASNQLDRLR 133 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444456666777777777777777777665
No 89
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=55.26 E-value=3.8e+02 Score=30.86 Aligned_cols=160 Identities=21% Similarity=0.328 Sum_probs=103.4
Q ss_pred HhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH----HHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHH
Q 002268 506 VETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVE----RVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREE 581 (944)
Q Consensus 506 kEae~Lk~eK~kFE~EWE~LDEKR~el~KEa~~I~eE----re~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ekEs 581 (944)
.+-.-||.+-..+-..|-.|-+.-..|...+-.|.-. =|-++..+..=-+.|+++|..+--.|.++=|.|.-.=-.
T Consensus 34 qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L~~~~e~EEE~ltn~L~r 113 (310)
T PF09755_consen 34 QENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETLALKYEQEEEFLTNDLSR 113 (310)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444444444333322 233334444446789999999988888877777655444
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHhhhhhhHHHHHHHH
Q 002268 582 FMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFRER---EKAFEEEKMREFQQISSLKEKAEKE 658 (944)
Q Consensus 582 F~~~M~hE~s~~~ek~q~Erad~l~d~EmqkreLe~~i~~R~EE~E~~L~ER---Ek~FEeek~~EL~~IN~lke~a~kE 658 (944)
=.+.+.+|+..+-..+.+|...++.-+--+=..|+.++...+.++++-.+++ |.+.|.+-+ +|-..+-+-
T Consensus 114 kl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE-------~lvN~L~Kq 186 (310)
T PF09755_consen 114 KLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQE-------ALVNRLWKQ 186 (310)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHH-------HHHHHHHHH
Confidence 5778889999999999999999888888888888888888888888655554 233333322 344456677
Q ss_pred HHHHHHHHHHhHHH
Q 002268 659 LEQVTLEIKRLDLE 672 (944)
Q Consensus 659 ~E~v~lE~~rLe~E 672 (944)
|.++..|...|+..
T Consensus 187 m~~l~~eKr~Lq~~ 200 (310)
T PF09755_consen 187 MDKLEAEKRRLQEK 200 (310)
T ss_pred HHHHHHHHHHHHHH
Confidence 78888777777655
No 90
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=55.21 E-value=3e+02 Score=30.00 Aligned_cols=122 Identities=20% Similarity=0.211 Sum_probs=52.0
Q ss_pred HhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhHHHHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHhHHHHH
Q 002268 162 AQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHE 241 (944)
Q Consensus 162 ~eeKs~evE~Kl~aAea~~AEa~Rk~s~~erkL~evEaRE~~LrrerlSf~~e~ea~e~~~~~qre~L~eweK~Lqe~ee 241 (944)
|+.+..+.+.+|...+.....++........+...++..-..++.++..+...+...+..+..-+..-..-.+--.....
T Consensus 3 aEr~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~ 82 (246)
T PF00769_consen 3 AEREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQ 82 (246)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555544444444444444444444333333332222222211111222222333
Q ss_pred HHHHHhhhhhhhhHhhhhhHHHHhHhHHHHHHHhhcHHHHHH
Q 002268 242 RLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFK 283 (944)
Q Consensus 242 rl~e~q~~lNqREe~~~e~~~~l~~kEkeLEe~~~kie~~~~ 283 (944)
.+.+.+..+.+-.+-....+.....++.+|..++.....+..
T Consensus 83 e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~ 124 (246)
T PF00769_consen 83 ELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEEAKE 124 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444455555555666666655555444433
No 91
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=54.52 E-value=4e+02 Score=30.95 Aligned_cols=36 Identities=19% Similarity=0.121 Sum_probs=18.6
Q ss_pred hhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcc
Q 002268 151 KFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRY 186 (944)
Q Consensus 151 KlaeA~aLv~~~eeKs~evE~Kl~aAea~~AEa~Rk 186 (944)
+-..+.....-++.....++.+|..|+..+..--++
T Consensus 155 ~~~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~ 190 (498)
T TIGR03007 155 KRQDSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQE 190 (498)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444444555555555666666665555554333
No 92
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=54.48 E-value=5.4e+02 Score=32.42 Aligned_cols=54 Identities=22% Similarity=0.247 Sum_probs=29.0
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHH-HHhhhhHHHHhhhhH
Q 002268 357 LAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRAL-VDKEKDLVERSHLLE 418 (944)
Q Consensus 357 le~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~l-keKEkdl~~Ksk~Lk 418 (944)
+-++++-+|.|+..-++++-.+|-.+..+|..+ ..++.. ++-++|.+.=+.+|-
T Consensus 543 ~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~--------~~lr~~~~e~~~~~e~L~~aL~ 597 (697)
T PF09726_consen 543 CRQRRRQLESELKKLRRELKQKEEQIRELESEL--------QELRKYEKESEKDTEVLMSALS 597 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhhhhhhHHHHHHHHH
Confidence 444555555666666666666666666666555 222333 444556655555543
No 93
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=51.59 E-value=4.3e+02 Score=30.43 Aligned_cols=121 Identities=20% Similarity=0.292 Sum_probs=98.2
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHH
Q 002268 448 IKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDE 527 (944)
Q Consensus 448 lK~dlEK~~a~~e~q~~qi~ee~e~Lkite~Er~E~~~Lq~eLKeEId~~R~Qke~L~kEae~Lk~eK~kFE~EWE~LDE 527 (944)
|-..|+.-...|.+---+++.+.-+|..-..++.|+.+ ....+=|..+++|..+|+..++ .+++++.+.|.-
T Consensus 4 mtq~LqeQ~~~F~aahaqm~sav~qL~~~r~~teelIr--~rVrq~V~hVqaqEreLLe~v~------~rYqR~y~ema~ 75 (324)
T PF12126_consen 4 MTQALQEQDGAFGAAHAQMRSAVSQLGRARADTEELIR--ARVRQVVAHVQAQERELLEAVE------ARYQRDYEEMAG 75 (324)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHH
Confidence 34455555666777778899999999999999999998 4567889999999999987665 578899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhH
Q 002268 528 KREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNRER 579 (944)
Q Consensus 528 KR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ek 579 (944)
+--.|..=+.+|..==.-++++++.-.| +|-.+|...+..-|+.|+.++
T Consensus 76 ~L~~LeavLqRir~G~~LVekM~~YASD---QEVLdMh~FlreAL~rLrqee 124 (324)
T PF12126_consen 76 QLGRLEAVLQRIRTGGALVEKMKLYASD---QEVLDMHGFLREALERLRQEE 124 (324)
T ss_pred HHhHHHHHHHHHHhHHHHHHHHHHhcch---HHHHHHHHHHHHHHHHhhhhc
Confidence 9999999999998777777777776554 678888888888888887653
No 94
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=51.40 E-value=1.6e+02 Score=32.62 Aligned_cols=83 Identities=25% Similarity=0.358 Sum_probs=66.7
Q ss_pred hhhHHHHH-----HHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 002268 480 AGELSVLE-----IKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDER 554 (944)
Q Consensus 480 r~E~~~Lq-----~eLKeEId~~R~Qke~L~kEae~Lk~eK~kFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~ 554 (944)
|.=+-+|| |.||+-.+.||-.-+++.+|-+.|..+-+..+.|.+.+.+.-..|+.|.-.+.+.+..+. .|-
T Consensus 118 RAGLktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~----~ev 193 (290)
T COG4026 118 RAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLP----GEV 193 (290)
T ss_pred HHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch----hHH
Confidence 34455566 899999999999999999999999999999999999999999999999988887665543 456
Q ss_pred hhhHHHHHHHHH
Q 002268 555 DSLRQERDAMRD 566 (944)
Q Consensus 555 erLK~Ek~~~r~ 566 (944)
.+|+..-+.+.+
T Consensus 194 ~~L~~r~~ELe~ 205 (290)
T COG4026 194 YDLKKRWDELEP 205 (290)
T ss_pred HHHHHHHHHhcc
Confidence 667666555543
No 95
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=49.83 E-value=5.7e+02 Score=31.30 Aligned_cols=47 Identities=17% Similarity=0.170 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHHHHHHHHH
Q 002268 658 ELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKL 704 (944)
Q Consensus 658 E~E~v~lE~~rLe~Er~Ei~~~ke~le~e~~Em~kdIeeL~~ls~KL 704 (944)
.+.++.-++..++++..++..+...+.++...++++|+.+...-.++
T Consensus 422 ~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 468 (650)
T TIGR03185 422 QIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEK 468 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555566666666666666666666666666555544443
No 96
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=48.96 E-value=7.3e+02 Score=32.32 Aligned_cols=129 Identities=18% Similarity=0.188 Sum_probs=76.2
Q ss_pred hhHHHHHHHHHHHHHhh----hhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHH
Q 002268 362 KLAEDEIEKKRRAWELR----DLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSL 437 (944)
Q Consensus 362 Ks~eeEle~K~~~~E~r----Evel~h~Eekl~kREqaLe~k~~~lkeKEkdl~~Ksk~LkEkEksL~aeEK~le~ek~~ 437 (944)
-..-++|+.|.+.|+.+ ..++++.|+.|..-.-.|+-.-.. -+.-.....+--+.+.++-+++-.++.-
T Consensus 262 q~sak~ieE~m~qlk~kns~L~~ElSqkeelVk~~qeeLd~lkqt-------~t~a~gdseqatkylh~enmkltrqkad 334 (1265)
T KOG0976|consen 262 QASAKEIEEKMRQLKAKNSVLGDELSQKEELVKELQEELDTLKQT-------RTRADGDSEQATKYLHLENMKLTRQKAD 334 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH-------HHHhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777777777654 446666666665444333321111 1111122233334455555555555544
Q ss_pred HHHHH-------HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q 002268 438 LQKEK-------EEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQ 500 (944)
Q Consensus 438 L~~ek-------Eel~~lK~dlEK~~a~~e~q~~qi~ee~e~Lkite~Er~E~~~Lq~eLKeEId~~R~Q 500 (944)
|+-+- +.+-....||||-++.....-+.|.+-.+ .-+.+-.-++-||.++-++||.....
T Consensus 335 irc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~---nve~elqsL~~l~aerqeQidelKn~ 401 (1265)
T KOG0976|consen 335 IRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKE---NVEEELQSLLELQAERQEQIDELKNH 401 (1265)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 43332 34556778999999988888777765544 44566677888999999999876654
No 97
>PRK04863 mukB cell division protein MukB; Provisional
Probab=47.98 E-value=9.2e+02 Score=33.16 Aligned_cols=30 Identities=27% Similarity=0.328 Sum_probs=22.7
Q ss_pred HHHHHHHHHhHHHHhhhhhhHHHHHHHHhh
Q 002268 333 NEIQKIIANHESALRVKQSEFEAELAIKYK 362 (944)
Q Consensus 333 ~eIQkLldeh~a~L~~Kk~eFElEle~krK 362 (944)
..-++.++.+-..|..+..+++--+++.+.
T Consensus 505 ~~~~~~~~~~~~~~~~~~~~l~~~~~~q~~ 534 (1486)
T PRK04863 505 LREQRHLAEQLQQLRMRLSELEQRLRQQQR 534 (1486)
T ss_pred hHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 455777888888888888888887766554
No 98
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=47.72 E-value=3.7e+02 Score=29.44 Aligned_cols=30 Identities=20% Similarity=0.178 Sum_probs=20.1
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHhhhhhh
Q 002268 447 IIKSDLQKSLSSLDEKKKQVNCAKDKLEAM 476 (944)
Q Consensus 447 ~lK~dlEK~~a~~e~q~~qi~ee~e~Lkit 476 (944)
.....|..-+.+..+++++|++....|+.+
T Consensus 39 kE~~~L~~Er~~h~eeLrqI~~DIn~lE~i 68 (230)
T PF10146_consen 39 KEMEELLQERMAHVEELRQINQDINTLENI 68 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555677788888888887776644
No 99
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=47.69 E-value=2.7e+02 Score=34.61 Aligned_cols=71 Identities=23% Similarity=0.284 Sum_probs=49.2
Q ss_pred HHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 002268 466 VNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVA 540 (944)
Q Consensus 466 i~ee~e~Lkite~Er~E~~~Lq~eLKeEId~~R~Qke~L~kEae~Lk~eK~kFE~EWE~LDEKR~el~KEa~~I~ 540 (944)
+..-...++-.+.|-++|.+.=.+||.+|++++.+-..+-.+++ .+.+-.+|-+.+|..-..|++++..=.
T Consensus 424 i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~----~~~~~~rei~~~~~~I~~L~~~L~e~~ 494 (652)
T COG2433 424 IKKLEETVERLEEENSELKRELEELKREIEKLESELERFRREVR----DKVRKDREIRARDRRIERLEKELEEKK 494 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455555666667777777788888888888888777776 455556777788888888877776544
No 100
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=46.12 E-value=3.9e+02 Score=28.34 Aligned_cols=91 Identities=23% Similarity=0.324 Sum_probs=51.9
Q ss_pred hhhhhHhhhhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHHhhhHHHHHHHHHHHHHhHHhHHHHHHHHhh
Q 002268 250 LNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLAS 329 (944)
Q Consensus 250 lNqREe~~~e~~~~l~~kEkeLEe~~~kie~~~~~Lk~ke~dl~~r~~~l~~rEe~~~~~~~~L~~KEkeLl~leEKL~a 329 (944)
+.+...++......+....+.++..+..++.-+..|......+...-.........+......+......+..++..+..
T Consensus 65 ~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~ 144 (302)
T PF10186_consen 65 IEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQLAR 144 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444445555555555555555555555555555555333333444445556666777777777777777777
Q ss_pred hhhHHHHHHHH
Q 002268 330 KESNEIQKIIA 340 (944)
Q Consensus 330 RE~~eIQkLld 340 (944)
+-+.-|+.|..
T Consensus 145 ~r~~l~~~l~~ 155 (302)
T PF10186_consen 145 RRRQLIQELSE 155 (302)
T ss_pred HHHHHHHHHHH
Confidence 77666665543
No 101
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=43.33 E-value=9.5e+02 Score=32.01 Aligned_cols=201 Identities=19% Similarity=0.246 Sum_probs=121.2
Q ss_pred HHHHHhhhhhhhhhHHHHHHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhh----hhhhhhhhhhhhhHHHHHHHHHhhhh
Q 002268 91 AELLQKHDRASHLSAIAEARKREESLKKTLGVEKECIASLEKAVHEIRAE----SAETKVAADSKFAEARCMVENAQKKF 166 (944)
Q Consensus 91 ae~~lKREqaahl~ALsEaeKREEnLkKALgvEKqCVadLEKAL~emr~E----~AeiK~~sesKlaeA~aLv~~~eeKs 166 (944)
.+...+|..++|- +.+...+=..|.-.+|-..+=|.+||+-..+|... +...=-+-++|+..++..+.-.+...
T Consensus 240 ~~~~~~~~~~~~~--i~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd~em~~~~~~L~~~~~~~~~~~tr~~t~l 317 (1174)
T KOG0933|consen 240 LQAEEKRKNSAHE--IEEMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQRDAEMGGEVKALEDKLDSLQNEITREETSL 317 (1174)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3366677777774 46777777888888888888888888888888652 11111233444444444443333222
Q ss_pred HH-------HHHhhhhhhHHHHHHhcc---------------------hhHHhhhHHHHhhhhhHHHHHHhHhhhhhhhH
Q 002268 167 AE-------AEAKLHAAESLQAEANRY---------------------HRSAERKLQEVVAREDDLSRRIASFKADCEEK 218 (944)
Q Consensus 167 ~e-------vE~Kl~aAea~~AEa~Rk---------------------~s~~erkL~evEaRE~~LrrerlSf~~e~ea~ 218 (944)
.- -+.|+........+-.++ ++...--|...+--=..|..=..|-..+-.++
T Consensus 318 ~~~~~tl~~e~~k~e~i~~~i~e~~~~l~~k~~~~~~~~~~~~~~ke~~~~~s~~~e~~e~~~eslt~G~Ss~~~~e~~l 397 (1174)
T KOG0933|consen 318 NLKKETLNGEEEKLEEIRKNIEEDRKKLKEKEKAMAKVEEGYEKLKEAFQEDSKLLEKAEELVESLTAGLSSNEDEEKTL 397 (1174)
T ss_pred HHHHHHHhhhHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCccchhhH
Confidence 11 111222221111111111 11111111111111112222223333345677
Q ss_pred HHHHHHHHhchHHHHHHhHHHHHHHHHHhhhhhhhhHhhhhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhh
Q 002268 219 EREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLD 293 (944)
Q Consensus 219 e~~~~~qre~L~eweK~Lqe~eerl~e~q~~lNqREe~~~e~~~~l~~kEkeLEe~~~kie~~~~~Lk~ke~dl~ 293 (944)
+.++..-+.++++....+.+..-.+-..+.-|..++......+.....-.+.|+..+.-|+.-+..|..--.+++
T Consensus 398 ~~ql~~aK~~~~~~~t~~k~a~~k~e~~~~elk~~e~e~~t~~~~~~~~~~~ld~~q~eve~l~~~l~~l~~~~~ 472 (1174)
T KOG0933|consen 398 EDQLRDAKITLSEASTEIKQAKLKLEHLRKELKLREGELATASAEYVKDIEELDALQNEVEKLKKRLQSLGYKIG 472 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 788888889999999999999999988888899999999999999998888888888888887777765544444
No 102
>PRK06800 fliH flagellar assembly protein H; Validated
Probab=43.31 E-value=76 Score=34.17 Aligned_cols=50 Identities=32% Similarity=0.425 Sum_probs=34.1
Q ss_pred hhhhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Q 002268 676 INMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERL 725 (944)
Q Consensus 676 i~~~ke~le~e~~Em~kdIeeL~~ls~KLk~QRE~~~~eRe~f~~~vE~l 725 (944)
+..+.+.|..+|..+++....|..=.++|.+-|.+|-+||..|...+.+.
T Consensus 36 ~~~d~~~L~~~Q~~L~~e~~~l~~eqQ~l~~er~~l~~er~~~~~~~~e~ 85 (228)
T PRK06800 36 IQKDHEELLAQQKSLHKELNQLRQEQQKLERERQQLLADREQFQEHVQQQ 85 (228)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666677777777777777777777777777777777776665544
No 103
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=42.62 E-value=4e+02 Score=27.50 Aligned_cols=65 Identities=20% Similarity=0.320 Sum_probs=45.5
Q ss_pred HHhhhhhhHHHHHHhcchhHHhhhHHHHhhhhhHHHHHHhHhhhhhh---------hHHHHHHHHHhchHHHHHHhH
Q 002268 170 EAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIASFKADCE---------EKEREIIRERQSLSDRKKILQ 237 (944)
Q Consensus 170 E~Kl~aAea~~AEa~Rk~s~~erkL~evEaRE~~LrrerlSf~~e~e---------a~e~~~~~qre~L~eweK~Lq 237 (944)
..|+..|...+.++.++...+.+++..|.. .++.+.-.|..++- =.+..|..+++.+.-|+.-+.
T Consensus 162 ~~k~~~~~~ei~~~~~~~~~~~~~~~~is~---~~k~E~~rf~~~k~~d~k~~l~~~~~~~i~~~~~~~~~We~~~~ 235 (236)
T PF09325_consen 162 QDKVEQAENEIEEAERRVEQAKDEFEEISE---NIKKELERFEKEKVKDFKSMLEEYAESQIEYQKKMLEAWETFLP 235 (236)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHcc
Confidence 345556666666777777777777777754 36777777776643 245678899999999998764
No 104
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=41.89 E-value=7e+02 Score=30.68 Aligned_cols=111 Identities=21% Similarity=0.247 Sum_probs=69.4
Q ss_pred HHHHhhhhhHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHhHHHHHHHHHHhhhhhhhhHhhhhhHHHHhHhHHHHHH
Q 002268 194 LQEVVAREDDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEA 273 (944)
Q Consensus 194 L~evEaRE~~LrrerlSf~~e~ea~e~~~~~qre~L~eweK~Lqe~eerl~e~q~~lNqREe~~~e~~~~l~~kEkeLEe 273 (944)
..|.++||+.++ .+|....+-.-..+..-.--......-.+-...||.-.........+.+.+-.+.+.+++.+|+.
T Consensus 404 ~~E~esRE~LIk---~~Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~T 480 (518)
T PF10212_consen 404 SPEEESREQLIK---SYYMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELET 480 (518)
T ss_pred CCchhhHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667788875433 34444444333333333333333344444445555555555556667778888899999999999
Q ss_pred HhhcHHHHHHHHhhhhhhhhHhHHHHhhhHHHHHHHH
Q 002268 274 SRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIERE 310 (944)
Q Consensus 274 ~~~kie~~~~~Lk~ke~dl~~r~~~l~~rEe~~~~~~ 310 (944)
.+..-+.-..++-+-=..++.+|+ ...++++.++
T Consensus 481 Tr~NYE~QLs~MSEHLasmNeqL~---~Q~eeI~~LK 514 (518)
T PF10212_consen 481 TRRNYEEQLSMMSEHLASMNEQLA---KQREEIQTLK 514 (518)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHh
Confidence 999999998888887777766554 3344555444
No 105
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=41.32 E-value=5.4e+02 Score=28.58 Aligned_cols=68 Identities=19% Similarity=0.278 Sum_probs=37.4
Q ss_pred HHHhHHHHhhhhhhHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhH
Q 002268 339 IANHESALRVKQSEFEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDL 410 (944)
Q Consensus 339 ldeh~a~L~~Kk~eFElEle~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkeKEkdl 410 (944)
||-...-|..+..++--.|.. +..++..-..+++-.+.++...+..+..-+..+..-.++++.-+..+
T Consensus 15 lD~e~~rl~~~~~~~~~~l~k----~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 15 LDLEKDRLEPRIKEIRKALKK----AKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred HHHHHHHHHHhhhhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444333332 33455566666667777777777777766666655555555444444
No 106
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=40.68 E-value=4.7e+02 Score=27.75 Aligned_cols=124 Identities=23% Similarity=0.346 Sum_probs=89.7
Q ss_pred HHHHHHHHcc---CChHHHhhhcHH-HHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhHHHHHHHHHH----HHHHHhh
Q 002268 26 SIWKRLKEAG---LDEVSIKRRDKA-ALIAYIAKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEA----AELLQKH 97 (944)
Q Consensus 26 ~iWkr~~eaG---~de~s~~rrD~~-aLia~IskLE~ElydYQynMGLLLiEkKEwtSK~eel~qa~~e----ae~~lKR 97 (944)
.||+||..+. ++..--+--|+. .|--+|-.++..|....-.+.-++-.++-..-+|+++...++. |+.+|..
T Consensus 2 ~if~Rl~~iv~a~~n~~~dk~EDP~~~l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~ 81 (219)
T TIGR02977 2 GIFSRFADIVNSNLNALLDKAEDPEKMIRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSK 81 (219)
T ss_pred cHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 4899998765 566666777999 8888999999999999999999999999999999888776653 3444432
Q ss_pred hh-hhhhhHHH---HHHHhhHhhhhhhhhHHHHHHhHHHHHHHHHhhhhhhhhhhh
Q 002268 98 DR-ASHLSAIA---EARKREESLKKTLGVEKECIASLEKAVHEIRAESAETKVAAD 149 (944)
Q Consensus 98 Eq-aahl~ALs---EaeKREEnLkKALgvEKqCVadLEKAL~emr~E~AeiK~~se 149 (944)
-. .----||. .+...=..|...+..-+.-|..|..-|+.|+..+.++|..-.
T Consensus 82 G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~ 137 (219)
T TIGR02977 82 GREDLARAALIEKQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQK 137 (219)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 11111222 223344556666777778888899999999998888876544
No 107
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=38.55 E-value=3e+02 Score=25.15 Aligned_cols=66 Identities=29% Similarity=0.387 Sum_probs=49.1
Q ss_pred HHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHH
Q 002268 452 LQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDE 527 (944)
Q Consensus 452 lEK~~a~~e~q~~qi~ee~e~Lkite~Er~E~~~Lq~eLKeEId~~R~Qke~L~kEae~Lk~eK~kFE~EWE~LDE 527 (944)
+++..++=.++..++-.+=++|-.++ .++-.-|.++|.+-..+.+.+..|+...+..+.+-+.|-.
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk~e----------l~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~ 68 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSKKE----------LKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEE 68 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHH----------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555566666666666665554 8888889999999999999999999888888887776654
No 108
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=36.54 E-value=8e+02 Score=31.21 Aligned_cols=105 Identities=16% Similarity=0.162 Sum_probs=54.6
Q ss_pred hhhhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHHhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhHHH
Q 002268 256 HILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEI 335 (944)
Q Consensus 256 ~~~e~~~~l~~kEkeLEe~~~kie~~~~~Lk~ke~dl~~r~~~l~~rEe~~~~~~~~L~~KEkeLl~leEKL~aRE~~eI 335 (944)
++.+..+.+-.=..-++.|+..+......+..--.+|...-..+-.+..++......++....+|....++|..+....+
T Consensus 489 ~a~~iA~~~Glp~~ii~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~ 568 (782)
T PRK00409 489 NAFEIAKRLGLPENIIEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLL 568 (782)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444455555555544444333333333333333333334444555555555566666666666666666667
Q ss_pred HHHHHHhHHHHhhhhhhHHHHHHHH
Q 002268 336 QKIIANHESALRVKQSEFEAELAIK 360 (944)
Q Consensus 336 QkLldeh~a~L~~Kk~eFElEle~k 360 (944)
+++..+.+.+|..-+.+.+.=+...
T Consensus 569 ~~~~~~a~~~l~~a~~~~~~~i~~l 593 (782)
T PRK00409 569 EEAEKEAQQAIKEAKKEADEIIKEL 593 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777666666666665544444333
No 109
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=36.19 E-value=3.8e+02 Score=27.91 Aligned_cols=77 Identities=17% Similarity=0.236 Sum_probs=21.9
Q ss_pred hhHHHHHHHHHhchHHHHHHhHHHHHHHHHHhhhhhhhhHhhhhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhh
Q 002268 216 EEKEREIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNL 292 (944)
Q Consensus 216 ea~e~~~~~qre~L~eweK~Lqe~eerl~e~q~~lNqREe~~~e~~~~l~~kEkeLEe~~~kie~~~~~Lk~ke~dl 292 (944)
.+.+..+...|++|.+-.|.--+...+|.....-|...+..+.+....+..++.++..++.+|..-...|+++...+
T Consensus 70 ~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~ 146 (194)
T PF08614_consen 70 SSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKAN 146 (194)
T ss_dssp --------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567788888888888888888888888888888888888888888888888877777776655555555544443
No 110
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=35.63 E-value=7.1e+02 Score=28.35 Aligned_cols=27 Identities=15% Similarity=0.212 Sum_probs=15.9
Q ss_pred HHHhHHHHHHHHHHhhhhhhhhHhhhh
Q 002268 233 KKILQQEHERLLDAQTLLNEREDHILS 259 (944)
Q Consensus 233 eK~Lqe~eerl~e~q~~lNqREe~~~e 259 (944)
+-.+++...++.+|+.++++=|..+..
T Consensus 69 ~~sC~EL~~~I~egr~~~~~~E~et~~ 95 (312)
T smart00787 69 QFSCKELKKYISEGRDLFKEIEEETLI 95 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345556666666666666665555553
No 111
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=35.22 E-value=7.4e+02 Score=28.43 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHhHHHHHHHHHHH
Q 002268 615 LENCIEKRREELESSFREREKAFEE 639 (944)
Q Consensus 615 Le~~i~~R~EE~E~~L~EREk~FEe 639 (944)
-|..+-.+..+++..|..+.++-+.
T Consensus 132 ~E~~lvq~I~~L~k~le~~~k~~e~ 156 (294)
T COG1340 132 EERELVQKIKELRKELEDAKKALEE 156 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666677777776665443
No 112
>PRK10698 phage shock protein PspA; Provisional
Probab=34.98 E-value=6.1e+02 Score=27.35 Aligned_cols=65 Identities=22% Similarity=0.299 Sum_probs=53.3
Q ss_pred HHHHHHHHcc---CChHHHhhhcHH-HHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhHHHHHHHHHH
Q 002268 26 SIWKRLKEAG---LDEVSIKRRDKA-ALIAYIAKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEA 90 (944)
Q Consensus 26 ~iWkr~~eaG---~de~s~~rrD~~-aLia~IskLE~ElydYQynMGLLLiEkKEwtSK~eel~qa~~e 90 (944)
.||+||..+. ++..--+--|+. .|--+|-.++..|.+-...+.-++-.+|...-+|+++...++.
T Consensus 2 ~if~Rl~~ii~a~in~~ldkaEDP~k~l~q~i~em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~ 70 (222)
T PRK10698 2 GIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVE 70 (222)
T ss_pred CHHHHHHHHHHhHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999876 566666777999 7778899999999998888888888888888888888776553
No 113
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=33.47 E-value=4.4e+02 Score=26.70 Aligned_cols=31 Identities=26% Similarity=0.401 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhh
Q 002268 443 EEVNIIKSDLQKSLSSLDEKKKQVNCAKDKL 473 (944)
Q Consensus 443 Eel~~lK~dlEK~~a~~e~q~~qi~ee~e~L 473 (944)
+++..|..+|..+...+..-...+..-...|
T Consensus 72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL 102 (169)
T PF07106_consen 72 EELAELDAEIKELREELAELKKEVKSLEAEL 102 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433333333333333
No 114
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=33.41 E-value=1.1e+03 Score=30.02 Aligned_cols=224 Identities=24% Similarity=0.293 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhhhh---HHHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHH
Q 002268 554 RDSLRQERDAMRDQHKRDVDSLNRE---REEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSF 630 (944)
Q Consensus 554 ~erLK~Ek~~~r~~~krelE~L~~e---kEsF~~~M~hE~s~~~ek~q~Erad~l~d~EmqkreLe~~i~~R~EE~E~~L 630 (944)
++.|=+|=.+..++|...+..|.-+ -....+++.-|..-+....+.-+.+ .-++|+++..| +++|=-+=
T Consensus 18 Ee~Ll~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~-~~~~e~~~~~l-------r~e~ke~K 89 (717)
T PF09730_consen 18 EESLLQESASKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKE-CEDLELERKRL-------REEIKEYK 89 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH-------HHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHHHHHHH--------
Q 002268 631 REREKAFEEEKMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQ-------- 702 (944)
Q Consensus 631 ~EREk~FEeek~~EL~~IN~lke~a~kE~E~v~lE~~rLe~Er~Ei~~~ke~le~e~~Em~kdIeeL~~ls~-------- 702 (944)
--=-+....=-+-|-+||+-+|.|..=.--+|.+| -+.-.-.+|+++..-++..++++..|++
T Consensus 90 ~rE~rll~dyselEeENislQKqvs~Lk~sQvefE---------~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleE 160 (717)
T PF09730_consen 90 FREARLLQDYSELEEENISLQKQVSVLKQSQVEFE---------GLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEE 160 (717)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred ---HHHHHHHHHHHhhHHHHHHH--HHhhhhhhHHhHHhHHhHhhhhhcccchhhhhhhHHhhhhhhccccccCCCCCcc
Q 002268 703 ---KLEEQRQLLHADREEIQAES--ERLKKLEDLKIAVDYMAVSEMQRSRLEHSQKKISAKRHLNQQTSLAHADLGSDQK 777 (944)
Q Consensus 703 ---KLk~QRE~~~~eRe~f~~~v--E~lK~ckncg~~~~~~vLsdlq~s~~~~~~~ki~a~~~l~~~~~~~~~~~~~~~~ 777 (944)
-|+..||+=++=|.++-..+ +..-...+.-..++.+.+++=.....+|+.-.-..+-++++.++.....
T Consensus 161 ALesl~~EReqk~~LrkEL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~------ 234 (717)
T PF09730_consen 161 ALESLKSEREQKNALRKELDQHLNIESISYLSNLAISLDGLKFSEDPRAATEPNNDDEEENGGLNGGPGLAKGN------ 234 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCccccccccchhhcccccccccccccccCCCCchhhhcchhhccchhcccc------
Q ss_pred ccccCCCCCCCCcccccccccCCCCC---cchh
Q 002268 778 FDVTNNGDRFNTPSVQKTASASPPSL---ARFS 807 (944)
Q Consensus 778 ~~~~n~~d~~~sp~~~~~~~~SP~s~---~~~S 807 (944)
+.....+|...+ +.+|+++ .=||
T Consensus 235 -----~~~~~~~~~~~~--~~~p~~~lv~DLfS 260 (717)
T PF09730_consen 235 -----GDNRMSTPRKSE--SFSPAPSLVSDLFS 260 (717)
T ss_pred -----cccccCCCCCCC--CCCCCCcccchhhh
No 115
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=33.33 E-value=1.5e+02 Score=29.22 Aligned_cols=43 Identities=33% Similarity=0.495 Sum_probs=26.7
Q ss_pred HHhHHHHHHHHHhhhhhhhhhhh--hhhhHHHHHHHHHhhhhHHH
Q 002268 127 IASLEKAVHEIRAESAETKVAAD--SKFAEARCMVENAQKKFAEA 169 (944)
Q Consensus 127 VadLEKAL~emr~E~AeiK~~se--sKlaeA~aLv~~~eeKs~ev 169 (944)
|+-|++||.++++.|......++ .|+.+.+.=|...+.-+.++
T Consensus 45 v~GLe~AL~~v~~~Ctd~~l~~e~q~ki~~~~~kV~ere~eL~eA 89 (115)
T PF06476_consen 45 VAGLEKALEEVKAHCTDEGLKAERQQKIAEKQQKVAEREAELKEA 89 (115)
T ss_pred HHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67799999999999987664443 34444444444444433333
No 116
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=32.89 E-value=7.6e+02 Score=31.38 Aligned_cols=43 Identities=9% Similarity=0.193 Sum_probs=22.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh
Q 002268 429 KEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKD 471 (944)
Q Consensus 429 K~le~ek~~L~~ekEel~~lK~dlEK~~a~~e~q~~qi~ee~e 471 (944)
.+|+.++..++..++++..+..++++.+..++.+..++.+++.
T Consensus 518 ~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~ 560 (771)
T TIGR01069 518 EKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERER 560 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555555555555555544333
No 117
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=32.12 E-value=7.5e+02 Score=27.55 Aligned_cols=111 Identities=16% Similarity=0.210 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhhhhHHHHHHHHHHHHh
Q 002268 492 EELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAV-ERVVVSKSLKDERDSLRQERDAMRDQHKR 570 (944)
Q Consensus 492 eEId~~R~Qke~L~kEae~Lk~eK~kFE~EWE~LDEKR~el~KEa~~I~e-Ere~lek~~~~E~erLK~Ek~~~r~~~kr 570 (944)
+||+++-.|-.++.+....+......|+++=+.|--+-++-++.-.+.+. .+-.|-..++.+-++++.+ +....+.+
T Consensus 43 ee~~eLk~qnkli~K~l~ei~~~qd~reK~~~~I~ssL~eTtkdf~~~~~k~~~dF~~~Lq~~Lk~V~td--e~k~~~~~ 120 (230)
T PF03904_consen 43 EEIQELKRQNKLIIKYLSEIEEKQDIREKNLKEIKSSLEETTKDFIDKTEKVHNDFQDILQDELKDVDTD--ELKNIAQN 120 (230)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchH--HHHHHHHH
Confidence 58999999999999999999999999999998888888877777776654 3456677777777777555 55666666
Q ss_pred hhhhhhhhHHHHHHhhhhhhhhHHHHHHHHHHHhhhhh
Q 002268 571 DVDSLNREREEFMNKMVHEHSEWFTKIQQERADFLLGI 608 (944)
Q Consensus 571 elE~L~~ekEsF~~~M~hE~s~~~ek~q~Erad~l~d~ 608 (944)
+.-.++ .+-..|-+|.-.--++-++--..|..+|
T Consensus 121 ei~k~r----~e~~~ml~evK~~~E~y~k~~k~~~~gi 154 (230)
T PF03904_consen 121 EIKKVR----EENKSMLQEVKQSHEKYQKRQKSMYKGI 154 (230)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 655554 5556666666555566666555555554
No 118
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=31.97 E-value=3e+02 Score=26.13 Aligned_cols=56 Identities=23% Similarity=0.298 Sum_probs=35.2
Q ss_pred HHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHH
Q 002268 464 KQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFE 519 (944)
Q Consensus 464 ~qi~ee~e~Lkite~Er~E~~~Lq~eLKeEId~~R~Qke~L~kEae~Lk~eK~kFE 519 (944)
.+|..+.+-+..++=|=.|+----..|.+|++.+|+....|..|.+.|+++...|.
T Consensus 11 ~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~Wq 66 (79)
T PRK15422 11 AKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQ 66 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555566777777777777777777777777776653
No 119
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=31.93 E-value=6.3e+02 Score=26.64 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=20.5
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhH
Q 002268 446 NIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGEL 483 (944)
Q Consensus 446 ~~lK~dlEK~~a~~e~q~~qi~ee~e~Lkite~Er~E~ 483 (944)
..++..+.++...++.-...|...+..+..++..|.+-
T Consensus 65 ~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~ 102 (188)
T PF03962_consen 65 QKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREES 102 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 34455555555555555555555555555555555443
No 120
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=31.88 E-value=5.8e+02 Score=26.20 Aligned_cols=100 Identities=17% Similarity=0.172 Sum_probs=78.7
Q ss_pred HHHHhHHHHHHHHHHhhhhhhhhHhhhhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHHhhhHHHHHHHHH
Q 002268 232 RKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREA 311 (944)
Q Consensus 232 weK~Lqe~eerl~e~q~~lNqREe~~~e~~~~l~~kEkeLEe~~~kie~~~~~Lk~ke~dl~~r~~~l~~rEe~~~~~~~ 311 (944)
|+++-....+-|-..++--.-=+.||..-.+.|...+..++.+-.-.+.+...+..-+..|......+..=+-+++.+.+
T Consensus 1 de~K~l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~s 80 (140)
T PF10473_consen 1 DEEKFLHVEEKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRS 80 (140)
T ss_pred CcHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777877777666667788888888888888888888877777777777777777777777777888888888
Q ss_pred HHHHhHHhHHHHHHHHhhhh
Q 002268 312 SLQKKEQKLLVSQETLASKE 331 (944)
Q Consensus 312 ~L~~KEkeLl~leEKL~aRE 331 (944)
.-..-.++|-..++++..=|
T Consensus 81 Ek~~L~k~lq~~q~kv~eLE 100 (140)
T PF10473_consen 81 EKENLDKELQKKQEKVSELE 100 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888776544
No 121
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=31.70 E-value=1.4e+03 Score=30.57 Aligned_cols=131 Identities=21% Similarity=0.274 Sum_probs=85.4
Q ss_pred hHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhHHHHhhhhhHHHHHH
Q 002268 129 SLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRI 208 (944)
Q Consensus 129 dLEKAL~emr~E~AeiK~~sesKlaeA~aLv~~~eeKs~evE~Kl~aAea~~AEa~Rk~s~~erkL~evEaRE~~Lrrer 208 (944)
+.++.|.....++.. ..-|++.+..=+.....+.-++..|+-.-+|+.+++......-+..+...-+.-+.++|+-
T Consensus 278 ~~~~ql~~~~~~i~~----~qek~~~l~~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~ 353 (1074)
T KOG0250|consen 278 EVERQLNNQEEEIKK----KQEKVDTLQEKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREV 353 (1074)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 334444444444332 2334555556666666666666666666677777777777888888888888888889988
Q ss_pred hHhhhhhhhHHHHHHHHHhchHHHHHHhHHHHHHH-HHHhhhhhhhhHhhhhhHHH
Q 002268 209 ASFKADCEEKEREIIRERQSLSDRKKILQQEHERL-LDAQTLLNEREDHILSKLQE 263 (944)
Q Consensus 209 lSf~~e~ea~e~~~~~qre~L~eweK~Lqe~eerl-~e~q~~lNqREe~~~e~~~~ 263 (944)
.-+..+..-.+..|..-+......+|.+-..+.++ -.++..+-++++.++-..+.
T Consensus 354 ~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~e 409 (1074)
T KOG0250|consen 354 NDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKE 409 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 88888777777777777777777777777666666 44444455555544443333
No 122
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=31.44 E-value=1.5e+03 Score=30.84 Aligned_cols=66 Identities=20% Similarity=0.152 Sum_probs=31.2
Q ss_pred hhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHH--HHHHHHHhhhhhHHHHHHHHHHHhhh
Q 002268 408 KDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNI--IKSDLQKSLSSLDEKKKQVNCAKDKL 473 (944)
Q Consensus 408 kdl~~Ksk~LkEkEksL~aeEK~le~ek~~L~~ekEel~~--lK~dlEK~~a~~e~q~~qi~ee~e~L 473 (944)
.++......|.+..+.+....++++..+...+.--.+..+ ++..++..+..+.++..|..-+...+
T Consensus 626 ~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~eq~~~E~~~~ 693 (1317)
T KOG0612|consen 626 AELKEEISSLEETLKAGKKELLKVEELKRENQERISDSEKEALEIKLERKLKMLQNELEQENAEHHRL 693 (1317)
T ss_pred HHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444433333333333333 55555555555555555555554444
No 123
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=30.59 E-value=6.7e+02 Score=26.48 Aligned_cols=21 Identities=14% Similarity=0.245 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHhHHhhHHHH
Q 002268 492 EELDVVRAQKLELMVETDKLQ 512 (944)
Q Consensus 492 eEId~~R~Qke~L~kEae~Lk 512 (944)
.+|+.++.....|....+.++
T Consensus 76 ~~~~~~~~~i~~l~~~i~~~~ 96 (188)
T PF03962_consen 76 KEIEELEKKIEELEEKIEEAK 96 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 124
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=30.54 E-value=7.9e+02 Score=27.33 Aligned_cols=90 Identities=23% Similarity=0.295 Sum_probs=54.5
Q ss_pred HHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 002268 505 MVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMN 584 (944)
Q Consensus 505 ~kEae~Lk~eK~kFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~ 584 (944)
.-|.+-++......+.|-..|++.++.|++++....+.-.++++-+...+.++..+-..++. +...+..+++....
T Consensus 95 ~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e----~~~~~~~~~~~L~~ 170 (239)
T COG1579 95 NIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIRE----EGQELSSKREELKE 170 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 33444444444444555555555666666666666666666666666666666666555443 45667788888888
Q ss_pred hhhhhhhhHHHHHH
Q 002268 585 KMVHEHSEWFTKIQ 598 (944)
Q Consensus 585 ~M~hE~s~~~ek~q 598 (944)
+|.-+=...++++-
T Consensus 171 ~l~~ell~~yeri~ 184 (239)
T COG1579 171 KLDPELLSEYERIR 184 (239)
T ss_pred hcCHHHHHHHHHHH
Confidence 88876666666553
No 125
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=29.19 E-value=6.1e+02 Score=25.58 Aligned_cols=37 Identities=27% Similarity=0.188 Sum_probs=29.8
Q ss_pred hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhh
Q 002268 472 KLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVET 508 (944)
Q Consensus 472 ~Lkite~Er~E~~~Lq~eLKeEId~~R~Qke~L~kEa 508 (944)
.++.++.|-.+|++|=..|-.-|.+||..-..|=-++
T Consensus 78 ~~~~~q~EldDLL~ll~Dle~K~~kyk~rLk~LG~eV 114 (136)
T PF04871_consen 78 ARKEAQSELDDLLVLLGDLEEKRKKYKERLKELGEEV 114 (136)
T ss_pred HHHhhhhhHHHHHHHHHhHHHHHHHHHHHHHHcCCCc
Confidence 4466888999999999999999999998877664444
No 126
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=29.11 E-value=7.5e+02 Score=26.62 Aligned_cols=65 Identities=17% Similarity=0.249 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHhHHhhHHHHHHH-------HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002268 488 IKLKEELDVVRAQKLELMVETDKLQLEK-------AKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKD 552 (944)
Q Consensus 488 ~eLKeEId~~R~Qke~L~kEae~Lk~eK-------~kFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~ 552 (944)
...-+.|+.+-.++..|..+...|..+. ...++-=..+....+.|+.....|..-+..+.-++..
T Consensus 38 ~~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~ 109 (251)
T PF11932_consen 38 QQSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQ 109 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443 3333333444444444444444444444444444433
No 127
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=28.93 E-value=1.2e+03 Score=28.93 Aligned_cols=275 Identities=21% Similarity=0.280 Sum_probs=121.9
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhH
Q 002268 353 FEAELAIKYKLAEDEIEKKRRAWELRDLDLGQREESLLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEAD 432 (944)
Q Consensus 353 FElEle~krKs~eeEle~K~~~~E~rEvel~h~Eekl~kREqaLe~k~~~lkeKEkdl~~Ksk~LkEkEksL~aeEK~le 432 (944)
||+|+-.-|+.+++- -.+....|-.+.+-...++.-..++.++++...+==..+..+...|...+-++.
T Consensus 90 ye~El~~ar~~l~e~-----------~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~ 158 (546)
T KOG0977|consen 90 YEAELATARKLLDET-----------ARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEIN 158 (546)
T ss_pred hhhhHHHHHHHHHHH-----------HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHH
Confidence 555555555555543 223333333334444444444444444444444444444444444444444443
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHH
Q 002268 433 LKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQ 512 (944)
Q Consensus 433 ~ek~~L~~ekEel~~lK~dlEK~~a~~e~q~~qi~ee~e~Lkite~Er~E~~~Lq~eLKeEId~~R~Qke~L~kEae~Lk 512 (944)
.-+...-.=-+++.-++.+...+...|..=+.+++.|. --|.++.---..|.++|+-+..+=.. ++.
T Consensus 159 ~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Et-------llr~d~~n~~q~Lleel~f~~~~h~~------eI~ 225 (546)
T KOG0977|consen 159 TLKRRIKALEDELKRLKAENSRLREELARARKQLDDET-------LLRVDLQNRVQTLLEELAFLKRIHKQ------EIE 225 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-------HHHHHHHhHHHHHHHHHHHHHhccHH------HHH
Confidence 33333333344455556666666666555555555443 11233333334456666655433221 223
Q ss_pred HHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhh-----------hhH
Q 002268 513 LEKAKFEAEW--EMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLN-----------RER 579 (944)
Q Consensus 513 ~eK~kFE~EW--E~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~-----------~ek 579 (944)
+++.+|..+- ..=|.=+.+|..=+.+|-.+=++. .+.=+.+++.-|++.+..++ ..|
T Consensus 226 e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~----------~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~r 295 (546)
T KOG0977|consen 226 EERRKARRDTTADNREYFKNELALAIREIRAQYEAI----------SRQNRKDIESWYKRKIQEIRTSAERANVEQNYAR 295 (546)
T ss_pred HHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHH----------HHHhHHHHHHHHHHHHHHHHhhhccccchhHHHH
Confidence 3334444443 222233333433333333322222 22223334444444444433 233
Q ss_pred HHHHHhhhhhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 002268 580 EEFMNKMVHEHSEWFTKIQQERADFLLGIEMQKRDLENCIEKRREELESSFREREKAFEEEKMREFQQISSLKEKAEKEL 659 (944)
Q Consensus 580 EsF~~~M~hE~s~~~ek~q~Erad~l~d~EmqkreLe~~i~~R~EE~E~~L~EREk~FEeek~~EL~~IN~lke~a~kE~ 659 (944)
|+... |. ..|-.=|++ +.|+|..-. .+.++.+.++..|.+=-+.|+..=..- ..+|
T Consensus 296 EEl~~-~R-------~~i~~Lr~k-lselE~~n~----~L~~~I~dL~~ql~e~~r~~e~~L~~k-----------d~~i 351 (546)
T KOG0977|consen 296 EELRR-IR-------SRISGLRAK-LSELESRNS----ALEKRIEDLEYQLDEDQRSFEQALNDK-----------DAEI 351 (546)
T ss_pred HHHHH-HH-------hcccchhhh-hccccccCh----hHHHHHHHHHhhhhhhhhhhhhhhhhH-----------HHHH
Confidence 33221 11 111111111 124444333 455667788888888888887642221 2345
Q ss_pred HHHHHHHHHhHHHHHHhhhhhhhhhH
Q 002268 660 EQVTLEIKRLDLERMEINMDRQRRDR 685 (944)
Q Consensus 660 E~v~lE~~rLe~Er~Ei~~~ke~le~ 685 (944)
..|.-|+..|-.|.+.+--.+.-|+.
T Consensus 352 ~~mReec~~l~~Elq~LlD~ki~Ld~ 377 (546)
T KOG0977|consen 352 AKMREECQQLSVELQKLLDTKISLDA 377 (546)
T ss_pred HHHHHHHHHHHHHHHHhhchHhHHHh
Confidence 55556666666666655555555554
No 128
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=28.77 E-value=1.1e+03 Score=28.35 Aligned_cols=17 Identities=12% Similarity=0.329 Sum_probs=9.2
Q ss_pred CCCCcchhHHHHHHHHhhcc
Q 002268 800 PPSLARFSWIKRFADLVFKH 819 (944)
Q Consensus 800 P~s~~~~SWlrKCtskIFk~ 819 (944)
|+.+| |+..-+|.||++
T Consensus 490 ~~~~g---~~~~~~s~~~S~ 506 (582)
T PF09731_consen 490 PEGAG---LLGHLLSYLFSL 506 (582)
T ss_pred CCCCC---HHHHHHHHHHhe
Confidence 45555 555555555543
No 129
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=28.38 E-value=1.1e+03 Score=28.33 Aligned_cols=75 Identities=19% Similarity=0.232 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHH
Q 002268 444 EVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAE 521 (944)
Q Consensus 444 el~~lK~dlEK~~a~~e~q~~qi~ee~e~Lkite~Er~E~~~Lq~eLKeEId~~R~Qke~L~kEae~Lk~eK~kFE~E 521 (944)
.|...+..|+--++.+..........+.+|..+..|+.. +..+|-.+|..-+...++|-+.+..|+.+..+-|.+
T Consensus 172 ~l~~~~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk---~~~~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~ 246 (420)
T COG4942 172 QLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKK---TLAQLNSELSADQKKLEELRANESRLKNEIASAEAA 246 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 333333333333344444444444555566666555543 346777777777888888888888888888776644
No 130
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=27.94 E-value=1.5e+02 Score=28.77 Aligned_cols=68 Identities=29% Similarity=0.266 Sum_probs=46.8
Q ss_pred hhhhHHHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhH
Q 002268 119 TLGVEKECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRS 189 (944)
Q Consensus 119 ALgvEKqCVadLEKAL~emr~E~AeiK~~sesKlaeA~aLv~~~eeKs~evE~Kl~aAea~~AEa~Rk~s~ 189 (944)
.|.-|+.-...+|.....|-.|+-+. +.+=|.+||.||+.+......++.|...++..+.++......
T Consensus 2 ~l~~e~~~r~~ae~~~~~ie~ElEeL---TasLFeEAN~MVa~ar~e~~~~e~k~~~le~~l~e~~~~l~~ 69 (100)
T PF06428_consen 2 ELEEERERREEAEQEKEQIESELEEL---TASLFEEANKMVADARRERAALEEKNEQLEKQLKEKEALLES 69 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHCHCCCH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555566788888887777763 345579999999988877777777776666666655544333
No 131
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=27.42 E-value=6.1e+02 Score=24.99 Aligned_cols=96 Identities=27% Similarity=0.301 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHH
Q 002268 443 EEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEW 522 (944)
Q Consensus 443 Eel~~lK~dlEK~~a~~e~q~~qi~ee~e~Lkite~Er~E~~~Lq~eLKeEId~~R~Qke~L~kEae~Lk~eK~kFE~EW 522 (944)
..+..+...+...+..+..+-.....++++.+.-=---.+-..-=..||.+...++.+...|-.+++..+.....-+.-|
T Consensus 17 ~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw 96 (132)
T PF07926_consen 17 EQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASW 96 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 33444555666666666666666666666644211111111222256777777788888888888888877777777777
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 002268 523 EMIDEKREELRKEAERVAV 541 (944)
Q Consensus 523 E~LDEKR~el~KEa~~I~e 541 (944)
+ +-+..|.++...+..
T Consensus 97 ~---~qk~~le~e~~~~~~ 112 (132)
T PF07926_consen 97 E---EQKEQLEKELSELEQ 112 (132)
T ss_pred H---HHHHHHHHHHHHHHH
Confidence 5 345555555554443
No 132
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=27.39 E-value=8.3e+02 Score=26.57 Aligned_cols=172 Identities=19% Similarity=0.279 Sum_probs=102.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHh
Q 002268 428 EKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVE 507 (944)
Q Consensus 428 EK~le~ek~~L~~ekEel~~lK~dlEK~~a~~e~q~~qi~ee~e~Lkite~Er~E~~~Lq~eLKeEId~~R~Qke~L~kE 507 (944)
-++|..+...|...-+-+....+-|---...+..+.+-+.++-+.-++.++|=.+ ||...-.+=.+..-|++.
T Consensus 17 n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEled-------Lk~~~~~lEE~~~~L~aq 89 (193)
T PF14662_consen 17 NQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELED-------LKTLAKSLEEENRSLLAQ 89 (193)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444333344444444444555555555554433 344444445567788888
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhhhhhhhhhHHHHHHhhh
Q 002268 508 TDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRDVDSLNREREEFMNKMV 587 (944)
Q Consensus 508 ae~Lk~eK~kFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~krelE~L~~ekEsF~~~M~ 587 (944)
+-.|..+...+.++|+.|-+....|.-+...+... ...|-.+..+++.++- ..++|-+.|++|.+.--
T Consensus 90 ~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~-----------~~eL~~~~~~Lq~Ql~-~~e~l~~~~da~l~e~t 157 (193)
T PF14662_consen 90 ARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKR-----------SKELATEKATLQRQLC-EFESLICQRDAILSERT 157 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHH-----------HHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 88999999999999998888777777666655532 2334446666666552 57899999999988766
Q ss_pred hhhhhHHHHHHHHHHHhhhhhHhhhhhhHHHH
Q 002268 588 HEHSEWFTKIQQERADFLLGIEMQKRDLENCI 619 (944)
Q Consensus 588 hE~s~~~ek~q~Erad~l~d~EmqkreLe~~i 619 (944)
+--..+..-|. |-.....++-.-+..||.-|
T Consensus 158 ~~i~eL~~~ie-Ey~~~teeLR~e~s~LEeql 188 (193)
T PF14662_consen 158 QQIEELKKTIE-EYRSITEELRLEKSRLEEQL 188 (193)
T ss_pred hhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 55555443333 33445556666666666554
No 133
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=27.06 E-value=4.6e+02 Score=28.83 Aligned_cols=57 Identities=28% Similarity=0.393 Sum_probs=41.9
Q ss_pred hHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhh
Q 002268 504 LMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERDSLRQERDAMRDQHKRD 571 (944)
Q Consensus 504 L~kEae~Lk~eK~kFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~erLK~Ek~~~r~~~kre 571 (944)
+.++.+.|+.+-++=..+-+-.+.+...+.|..+.+. +|.|||..+-..+++++...
T Consensus 156 ~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~-----------~EydrLlee~~~Lq~~i~~~ 212 (216)
T KOG1962|consen 156 LKADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQ-----------DEYDRLLEEYSKLQEQIESG 212 (216)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-----------cHHHHHHHHHHHHHHHHhcc
Confidence 3444555555555556666777777778888777776 79999999999999988643
No 134
>PTZ00266 NIMA-related protein kinase; Provisional
Probab=26.95 E-value=6.7e+02 Score=33.11 Aligned_cols=8 Identities=13% Similarity=0.023 Sum_probs=3.7
Q ss_pred HHHHHHHh
Q 002268 132 KAVHEIRA 139 (944)
Q Consensus 132 KAL~emr~ 139 (944)
.||..|+.
T Consensus 129 ~ALaYLHs 136 (1021)
T PTZ00266 129 HALAYCHN 136 (1021)
T ss_pred HHHHHHHh
Confidence 34444443
No 135
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=26.82 E-value=7.5e+02 Score=25.85 Aligned_cols=64 Identities=22% Similarity=0.382 Sum_probs=48.0
Q ss_pred HHHHHHHcc---CChHHHhhhcHHHHHH-HHHHHHHHHhhhhhhhhhhhhhhhhhhhhHHHHHHHHHH
Q 002268 27 IWKRLKEAG---LDEVSIKRRDKAALIA-YIAKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEA 90 (944)
Q Consensus 27 iWkr~~eaG---~de~s~~rrD~~aLia-~IskLE~ElydYQynMGLLLiEkKEwtSK~eel~qa~~e 90 (944)
+|+||..+. ++..--+--|+..++. +|-.++..|=...-.++-.+-.++...-+|+++...+..
T Consensus 2 lf~Rl~~~~~a~~~~~ld~~EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~ 69 (221)
T PF04012_consen 2 LFKRLKTLVKANINELLDKAEDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEK 69 (221)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688888765 4666666678887664 677888888888888888888888888888877766543
No 136
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=25.82 E-value=1.7e+03 Score=29.79 Aligned_cols=131 Identities=21% Similarity=0.156 Sum_probs=76.2
Q ss_pred HHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHH-------HHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 002268 396 LEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLL-------QKEKEEVNIIKSDLQKSLSSLDEKKKQVNC 468 (944)
Q Consensus 396 Le~k~~~lkeKEkdl~~Ksk~LkEkEksL~aeEK~le~ek~~L-------~~ekEel~~lK~dlEK~~a~~e~q~~qi~e 468 (944)
|.++.+-|.+.=.++....-.|...+|.|.-+.+++..+.... ..+.+.+..+-.......+..++-.-+|..
T Consensus 413 Ls~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~e~~~q~ls~~~Q~~~et~el~~~ikn 492 (1195)
T KOG4643|consen 413 LSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLENEELDQLLSLQDQLEAETEELLNQIKN 492 (1195)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444444444444444433333332221 223444445555555555555555555555
Q ss_pred HHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhH
Q 002268 469 AKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMID 526 (944)
Q Consensus 469 e~e~Lkite~Er~E~~~Lq~eLKeEId~~R~Qke~L~kEae~Lk~eK~kFE~EWE~LD 526 (944)
....|.-..-|.+-+.-+-.+||+++-+|=-|-..+..=++.|.+.+-..|.|-..|=
T Consensus 493 lnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~Ll 550 (1195)
T KOG4643|consen 493 LNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLL 550 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 5666665565666666666788888888888888888888888888888888877664
No 137
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=25.46 E-value=1.5e+03 Score=28.89 Aligned_cols=99 Identities=17% Similarity=0.120 Sum_probs=53.4
Q ss_pred hhhhhHHHHhHhHHHHHHHhhcHHHHHHHHhhhhhhhhHhHHHHhhhHHHHHHHHHHHHHhHHhHHHHHHHHhhhhhHHH
Q 002268 256 HILSKLQELSRKEKELEASRANVEEKFKALNEEKSNLDLTLVSLLKREEAVIEREASLQKKEQKLLVSQETLASKESNEI 335 (944)
Q Consensus 256 ~~~e~~~~l~~kEkeLEe~~~kie~~~~~Lk~ke~dl~~r~~~l~~rEe~~~~~~~~L~~KEkeLl~leEKL~aRE~~eI 335 (944)
++++..+.+-.-..-++.|+..+......+.+--.+|......+-....++......++....+|....++|..+....+
T Consensus 484 ~a~~iA~~~Glp~~ii~~A~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~ 563 (771)
T TIGR01069 484 YAFEIAQRYGIPHFIIEQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKK 563 (771)
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555566666666655544444444344444444444444445555555555555666666666666666666
Q ss_pred HHHHHHhHHHHhhhhhhHH
Q 002268 336 QKIIANHESALRVKQSEFE 354 (944)
Q Consensus 336 QkLldeh~a~L~~Kk~eFE 354 (944)
+++-.+.+.++..-+.+.+
T Consensus 564 ~~a~~ea~~~~~~a~~~~~ 582 (771)
T TIGR01069 564 LELEKEAQEALKALKKEVE 582 (771)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666665555554444333
No 138
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=25.29 E-value=9.1e+02 Score=26.30 Aligned_cols=152 Identities=20% Similarity=0.340 Sum_probs=90.1
Q ss_pred HHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhh-------hh---HHHHHHhcchhHHhhhH
Q 002268 125 ECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHA-------AE---SLQAEANRYHRSAERKL 194 (944)
Q Consensus 125 qCVadLEKAL~emr~E~AeiK~~sesKlaeA~aLv~~~eeKs~evE~Kl~a-------Ae---a~~AEa~Rk~s~~erkL 194 (944)
-||.||+-.=+.++.|++..+-+-+.=-.-...|...+. +.-..+.+ |. --+....--...++-..
T Consensus 8 ~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~----~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~ 83 (193)
T PF14662_consen 8 SCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEIT----DLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEEN 83 (193)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 499999999999999999888665532222222322221 11111111 11 11111111122233333
Q ss_pred HHHhhhhhHHHHHHhHhhhhhhhHHHH---HHHHHhchHHHHHHhHHH----HHHHHHHhhhhhhhhHhhhhhHHHHhHh
Q 002268 195 QEVVAREDDLSRRIASFKADCEEKERE---IIRERQSLSDRKKILQQE----HERLLDAQTLLNEREDHILSKLQELSRK 267 (944)
Q Consensus 195 ~evEaRE~~LrrerlSf~~e~ea~e~~---~~~qre~L~eweK~Lqe~----eerl~e~q~~lNqREe~~~e~~~~l~~k 267 (944)
.-+-++-..+-++--|+.++.+.+..+ +.-.++-|...-+-|..+ +--++....++|+|+.-++++.+-...+
T Consensus 84 ~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL 163 (193)
T PF14662_consen 84 RSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEEL 163 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 334455566777777777777766554 444555555555555332 5566778888999999999999999888
Q ss_pred HHHHHHHhhcHHH
Q 002268 268 EKELEASRANVEE 280 (944)
Q Consensus 268 EkeLEe~~~kie~ 280 (944)
..-+++....++.
T Consensus 164 ~~~ieEy~~~tee 176 (193)
T PF14662_consen 164 KKTIEEYRSITEE 176 (193)
T ss_pred HHHHHHHHHHHHH
Confidence 8888877765543
No 139
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=25.22 E-value=1.4e+03 Score=28.34 Aligned_cols=105 Identities=21% Similarity=0.291 Sum_probs=54.3
Q ss_pred HHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhh----hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 002268 389 LLEREHDLEVQSRALVDKEKDLVERSHLLEEKENK----LIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKK 464 (944)
Q Consensus 389 l~kREqaLe~k~~~lkeKEkdl~~Ksk~LkEkEks----L~aeEK~le~ek~~L~~ekEel~~lK~dlEK~~a~~e~q~~ 464 (944)
+...=+.|+.+-++++.=++-+.+=.+++|.|-.+ |....-+++..-.+|+.=+..+-.|+..|.|-.-+
T Consensus 293 ~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is------ 366 (622)
T COG5185 293 ISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGIS------ 366 (622)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCC------
Confidence 34444555666666666655555555555544332 22222233333333333333333333333333333
Q ss_pred HHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHH
Q 002268 465 QVNCAKDKLEAMKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKL 511 (944)
Q Consensus 465 qi~ee~e~Lkite~Er~E~~~Lq~eLKeEId~~R~Qke~L~kEae~L 511 (944)
.+..+.|..||. +|-.|++++-.|+..|++++-+-
T Consensus 367 -----~e~fe~mn~Ere-------~L~reL~~i~~~~~~L~k~V~~~ 401 (622)
T COG5185 367 -----TEQFELMNQERE-------KLTRELDKINIQSDKLTKSVKSR 401 (622)
T ss_pred -----HHHHHHHHHHHH-------HHHHHHHHhcchHHHHHHHHHhH
Confidence 345566666765 44567888888888888877543
No 140
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=25.21 E-value=1e+03 Score=30.24 Aligned_cols=35 Identities=17% Similarity=0.198 Sum_probs=26.9
Q ss_pred hhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhh
Q 002268 141 SAETKVAADSKFAEARCMVENAQKKFAEAEAKLHA 175 (944)
Q Consensus 141 ~AeiK~~sesKlaeA~aLv~~~eeKs~evE~Kl~a 175 (944)
..+|+=.|+..|...+..+..++....+.-.++..
T Consensus 142 ~g~i~d~aS~eL~~iR~~~~~~~~~i~~~l~~~~~ 176 (782)
T PRK00409 142 EGEVKDSASEKLRGIRRQLRRKKSRIREKLESIIR 176 (782)
T ss_pred CCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788889999999999988888777766555443
No 141
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=24.89 E-value=4.3e+02 Score=32.19 Aligned_cols=30 Identities=27% Similarity=0.407 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHhhHHHHHH
Q 002268 485 VLEIKLKEELDVVRAQKLELMVETDKLQLE 514 (944)
Q Consensus 485 ~Lq~eLKeEId~~R~Qke~L~kEae~Lk~e 514 (944)
-.|.=||--||+.|.|..-+.-|-.+|+-+
T Consensus 507 niq~llkva~dnar~qekQiq~Ek~ELkmd 536 (641)
T KOG3915|consen 507 NIQGLLKVAIDNARAQEKQIQLEKTELKMD 536 (641)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999998888776666543
No 142
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=24.88 E-value=6e+02 Score=28.65 Aligned_cols=84 Identities=21% Similarity=0.295 Sum_probs=61.2
Q ss_pred hhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhhhhh----hhHHHHHHH
Q 002268 414 SHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQVNCAKDKLEAMKSEA----GELSVLEIK 489 (944)
Q Consensus 414 sk~LkEkEksL~aeEK~le~ek~~L~~ekEel~~lK~dlEK~~a~~e~q~~qi~ee~e~Lkite~Er----~E~~~Lq~e 489 (944)
--.+.+-|+.|+..=+.+ ..++.+=+..+.++..|--.+-+-|+..+..+...+.+|..+++=| +||-.|+.+
T Consensus 157 ~~e~~~iE~~l~~ai~~~---~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~E 233 (267)
T PF10234_consen 157 PLELNEIEKALKEAIKAV---QQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEE 233 (267)
T ss_pred CcCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 334555666666655555 4455555666777777777777778888888888888999988877 789999999
Q ss_pred HHHHHHHHHHH
Q 002268 490 LKEELDVVRAQ 500 (944)
Q Consensus 490 LKeEId~~R~Q 500 (944)
|++--+.|=..
T Consensus 234 L~~lY~~Y~~k 244 (267)
T PF10234_consen 234 LQKLYEIYVEK 244 (267)
T ss_pred HHHHHHHHHHH
Confidence 99987766443
No 143
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=24.49 E-value=1.4e+03 Score=28.06 Aligned_cols=75 Identities=19% Similarity=0.196 Sum_probs=43.5
Q ss_pred HHhhhhhHHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 002268 389 LLEREHDLEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQKSLSSLDEKKKQV 466 (944)
Q Consensus 389 l~kREqaLe~k~~~lkeKEkdl~~Ksk~LkEkEksL~aeEK~le~ek~~L~~ekEel~~lK~dlEK~~a~~e~q~~qi 466 (944)
+....+.++.++-.+..|-+.+...++.++|-.+.|.... ..-+.+|.+..+.........+.....|++|...|
T Consensus 373 ~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq---~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 373 LEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQ---DVWRGKLKELEEREKEALGSKDEKITDLQEQLRDL 447 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3455667777777777777778877888887777766433 22244444444444444444444444555555443
No 144
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=23.87 E-value=1e+03 Score=26.43 Aligned_cols=46 Identities=17% Similarity=0.115 Sum_probs=19.6
Q ss_pred hHHHHHHhHhhhhhhhHHHHHHHHHhchHHHHHHhHHHHHHHHHHh
Q 002268 202 DDLSRRIASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQ 247 (944)
Q Consensus 202 ~~LrrerlSf~~e~ea~e~~~~~qre~L~eweK~Lqe~eerl~e~q 247 (944)
..+..+...+.+....++..+..-+..+..++..+...+..+...+
T Consensus 133 ~~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~ 178 (423)
T TIGR01843 133 SLFESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVIS 178 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444444444444443333
No 145
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=23.57 E-value=9.9e+02 Score=26.14 Aligned_cols=106 Identities=22% Similarity=0.237 Sum_probs=71.4
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHHhhhHHHHhhhhhHHHHHHh
Q 002268 130 LEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSAERKLQEVVAREDDLSRRIA 209 (944)
Q Consensus 130 LEKAL~emr~E~AeiK~~sesKlaeA~aLv~~~eeKs~evE~Kl~aAea~~AEa~Rk~s~~erkL~evEaRE~~Lrrerl 209 (944)
|+-++++|+.++..++-+...-++....+-..+..=...++.=-..|...+.-.+ +.=||+-.- ++-
T Consensus 29 l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~-----------E~LAr~al~--~~~ 95 (225)
T COG1842 29 LEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGN-----------EDLAREALE--EKQ 95 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------HHHHHHHHH--HHH
Confidence 7888999999999988888777777777776666655555554444554444333 223333222 344
Q ss_pred HhhhhhhhHHHHHHHHHhchHHHHHHhHHHHHHHHHHhh
Q 002268 210 SFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQT 248 (944)
Q Consensus 210 Sf~~e~ea~e~~~~~qre~L~eweK~Lqe~eerl~e~q~ 248 (944)
++..-+.+++..+..+++.+-..++.+...+..+.+...
T Consensus 96 ~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~ 134 (225)
T COG1842 96 SLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRA 134 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666777788888888887777777777777777766553
No 146
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=23.53 E-value=1.1e+03 Score=26.82 Aligned_cols=125 Identities=12% Similarity=0.091 Sum_probs=64.4
Q ss_pred hhhhhhhhHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHhcchhHH---------hhhHHHHhhhhhHHHHHHhHhhhhhh
Q 002268 146 VAADSKFAEARCMVENAQKKFAEAEAKLHAAESLQAEANRYHRSA---------ERKLQEVVAREDDLSRRIASFKADCE 216 (944)
Q Consensus 146 ~~sesKlaeA~aLv~~~eeKs~evE~Kl~aAea~~AEa~Rk~s~~---------erkL~evEaRE~~LrrerlSf~~e~e 216 (944)
...+.+...+.....-++...-++..+|.+|+..+..--+++.-. ..+|.++..+-...+.++....+-..
T Consensus 160 ~~~~~~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~ 239 (444)
T TIGR03017 160 TNIELKVEPAQKAALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAAQAQVMDASSKEG 239 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455667777777788888888888888888888887766665433 12344444333333333322211111
Q ss_pred hHHH-----HHHHHHhchHHHHHHhHHHHHHHHHHhhhhhhhhHhhhhhHHHHhHhHHHH
Q 002268 217 EKER-----EIIRERQSLSDRKKILQQEHERLLDAQTLLNEREDHILSKLQELSRKEKEL 271 (944)
Q Consensus 217 a~e~-----~~~~qre~L~eweK~Lqe~eerl~e~q~~lNqREe~~~e~~~~l~~kEkeL 271 (944)
.... .+ -.=..+......|.+.+..+......+...-..+......+...+..|
T Consensus 240 ~~~~~~~~~~~-~~~~~i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l 298 (444)
T TIGR03017 240 GSSGKDALPEV-IANPIIQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQL 298 (444)
T ss_pred ccCCcccchhh-hcChHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Confidence 0000 00 000113344455555555555555555555555555444444444444
No 147
>PRK10884 SH3 domain-containing protein; Provisional
Probab=22.77 E-value=8.8e+02 Score=26.14 Aligned_cols=22 Identities=23% Similarity=0.188 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHhHHhhHHH
Q 002268 490 LKEELDVVRAQKLELMVETDKL 511 (944)
Q Consensus 490 LKeEId~~R~Qke~L~kEae~L 511 (944)
|++++...+.+-..|-++.+++
T Consensus 144 L~~~l~~~~~~~~~l~~~~~~~ 165 (206)
T PRK10884 144 LKNQLIVAQKKVDAANLQLDDK 165 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444443333
No 148
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=22.37 E-value=1.6e+03 Score=27.97 Aligned_cols=16 Identities=31% Similarity=0.231 Sum_probs=8.4
Q ss_pred hHHHHHHHHHhhhhhh
Q 002268 129 SLEKAVHEIRAESAET 144 (944)
Q Consensus 129 dLEKAL~emr~E~Aei 144 (944)
..|.+|...+..+.-+
T Consensus 212 ~aE~~l~~fk~~~~l~ 227 (754)
T TIGR01005 212 DAEAEVAAYRAQSDLL 227 (754)
T ss_pred HHHHHHHHHHHHcCCc
Confidence 3455555555555443
No 149
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=22.35 E-value=1.1e+03 Score=29.59 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=13.6
Q ss_pred HhhhhhhhhHHHHHHHHHHHhh
Q 002268 584 NKMVHEHSEWFTKIQQERADFL 605 (944)
Q Consensus 584 ~~M~hE~s~~~ek~q~Erad~l 605 (944)
.+++|||..-.++|-++|+++-
T Consensus 680 M~ve~eRr~eqeRihreReelR 701 (940)
T KOG4661|consen 680 MKVEEERRDEQERIHREREELR 701 (940)
T ss_pred HHHHHhhcchhhhhhhhHHHHh
Confidence 3455666666666666666543
No 150
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=22.15 E-value=1.1e+03 Score=26.11 Aligned_cols=9 Identities=56% Similarity=0.508 Sum_probs=3.4
Q ss_pred HHHhHHHHH
Q 002268 126 CIASLEKAV 134 (944)
Q Consensus 126 CVadLEKAL 134 (944)
|.+-+++|+
T Consensus 41 ~~~A~~~A~ 49 (297)
T PF02841_consen 41 NRAAVEKAV 49 (297)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 151
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=21.85 E-value=8.5e+02 Score=24.71 Aligned_cols=73 Identities=22% Similarity=0.332 Sum_probs=46.3
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhhhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 002268 641 KMREFQQISSLKEKAEKELEQVTLEIKRLDLERMEINMDRQRRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQA 720 (944)
Q Consensus 641 k~~EL~~IN~lke~a~kE~E~v~lE~~rLe~Er~Ei~~~ke~le~e~~Em~kdIeeL~~ls~KLk~QRE~~~~eRe~f~~ 720 (944)
|..=+..+......+..||+++.++.+|+.+|-.-.+. ..+..++..+...|..+..-+..++.
T Consensus 18 K~~l~~~l~~~i~~~d~el~QLefq~kr~~~e~~~~~~----------------~~~~~i~~q~~~e~~~r~e~k~~l~~ 81 (131)
T PF11068_consen 18 KEELLQELQEQIQQLDQELQQLEFQGKRMIKEIKKQNA----------------QQIQSIQQQFEQEKQERLEQKNQLLQ 81 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch----------------hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445666777888889999999999998887554433 33344445555555555555555666
Q ss_pred HHHHhhhhh
Q 002268 721 ESERLKKLE 729 (944)
Q Consensus 721 ~vE~lK~ck 729 (944)
+++++..++
T Consensus 82 ql~qv~~L~ 90 (131)
T PF11068_consen 82 QLEQVQKLE 90 (131)
T ss_dssp HHHHHHHS-
T ss_pred HHHHHhcCC
Confidence 666655544
No 152
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=21.40 E-value=7.2e+02 Score=23.71 Aligned_cols=57 Identities=23% Similarity=0.405 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q 002268 483 LSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVER 543 (944)
Q Consensus 483 ~~~Lq~eLKeEId~~R~Qke~L~kEae~Lk~eK~kFE~EWE~LDEKR~el~KEa~~I~eEr 543 (944)
|..|+++.++=||.+ ..|.-|+++||.+......|=..+-.-|..|..+...+..++
T Consensus 6 leqLE~KIqqAvdtI----~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~ 62 (79)
T PRK15422 6 FEKLEAKVQQAIDTI----TLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQ 62 (79)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 456888888888876 567778888876665555555554444444544444444333
No 153
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=21.38 E-value=8.8e+02 Score=28.32 Aligned_cols=52 Identities=21% Similarity=0.240 Sum_probs=33.2
Q ss_pred HHHhHHHHHHhhhhHHHHhhhhHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 002268 396 LEVQSRALVDKEKDLVERSHLLEEKENKLIAFEKEADLKKSLLQKEKEEVNIIKS 450 (944)
Q Consensus 396 Le~k~~~lkeKEkdl~~Ksk~LkEkEksL~aeEK~le~ek~~L~~ekEel~~lK~ 450 (944)
+..+-..+++.|++|-+|+.-||.-- .-+.++|+..+.+|..|.-.++.-++
T Consensus 350 vkekE~elke~Ekel~~kf~~lkr~h---~eEk~kle~~rr~Leee~~~f~~rk~ 401 (406)
T KOG3859|consen 350 VKEKEAELKEAEKELHEKFDRLKRLH---QEEKKKLEEKRKQLEEEVNAFQRRKT 401 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455567778888888887776532 23345677777777777666655444
No 154
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=21.04 E-value=3.3e+02 Score=24.76 Aligned_cols=53 Identities=9% Similarity=0.275 Sum_probs=45.3
Q ss_pred HHHHHhHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHhhhhHHHHHhhhhh
Q 002268 124 KECIASLEKAVHEIRAESAETKVAADSKFAEARCMVENAQKKFAEAEAKLHAA 176 (944)
Q Consensus 124 KqCVadLEKAL~emr~E~AeiK~~sesKlaeA~aLv~~~eeKs~evE~Kl~aA 176 (944)
+.++..+.+.+..|+.+...+.--...-+..++.+.++++.|...+..=..++
T Consensus 25 ~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v 77 (90)
T PF06103_consen 25 KKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAV 77 (90)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 67889999999999999999998888899999999999888887776555444
No 155
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=20.82 E-value=5.3e+02 Score=23.48 Aligned_cols=57 Identities=16% Similarity=0.189 Sum_probs=47.2
Q ss_pred hhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhhhHHhHHhHHhH
Q 002268 682 RRDREWAELNNSIEELMVQRQKLEEQRQLLHADREEIQAESERLKKLEDLKIAVDYMAV 740 (944)
Q Consensus 682 ~le~e~~Em~kdIeeL~~ls~KLk~QRE~~~~eRe~f~~~vE~lK~ckncg~~~~~~vL 740 (944)
.|+.+.+.++.+.|.+.....+-..--..+..+|+.|+.++.- .|.+|....++...
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~--a~~e~~~Lk~E~e~ 58 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGD--AYEENNKLKEENEA 58 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 4677788888888888888888888888999999999999876 78888887776543
No 156
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=20.62 E-value=1.6e+03 Score=27.57 Aligned_cols=85 Identities=19% Similarity=0.208 Sum_probs=65.1
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 002268 476 MKSEAGELSVLEIKLKEELDVVRAQKLELMVETDKLQLEKAKFEAEWEMIDEKREELRKEAERVAVERVVVSKSLKDERD 555 (944)
Q Consensus 476 te~Er~E~~~Lq~eLKeEId~~R~Qke~L~kEae~Lk~eK~kFE~EWE~LDEKR~el~KEa~~I~eEre~lek~~~~E~e 555 (944)
+.+=|.|--+||++||.=--.|++=.+.-+.|. ++|-+|=-.|=.+|-=--.=..|..++...|-.+++-.-+=-+
T Consensus 406 LqEsr~eKetLqlelkK~k~nyv~LQEry~~ei----QqKnksvsqclEmdk~LskKeeeverLQ~lkgelEkat~SALd 481 (527)
T PF15066_consen 406 LQESRNEKETLQLELKKIKANYVHLQERYMTEI----QQKNKSVSQCLEMDKTLSKKEEEVERLQQLKGELEKATTSALD 481 (527)
T ss_pred HHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHH----HHhhhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777889999988888888777778876 5788888888777765555556677788888888888888888
Q ss_pred hhHHHHHHH
Q 002268 556 SLRQERDAM 564 (944)
Q Consensus 556 rLK~Ek~~~ 564 (944)
+||.||..-
T Consensus 482 lLkrEKe~~ 490 (527)
T PF15066_consen 482 LLKREKETR 490 (527)
T ss_pred HHHHHHHHH
Confidence 888888754
No 157
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=20.44 E-value=1e+03 Score=25.23 Aligned_cols=40 Identities=18% Similarity=0.226 Sum_probs=21.0
Q ss_pred HhHhhhhhhhHHHHHHHHHhchHHHHHHhHHHHHHHHHHh
Q 002268 208 IASFKADCEEKEREIIRERQSLSDRKKILQQEHERLLDAQ 247 (944)
Q Consensus 208 rlSf~~e~ea~e~~~~~qre~L~eweK~Lqe~eerl~e~q 247 (944)
+.++..-...++.++..++..+...+..|.+.+..|.+.+
T Consensus 94 k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k 133 (219)
T TIGR02977 94 KQKAQELAEALERELAAVEETLAKLQEDIAKLQAKLAEAR 133 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555555555554443
No 158
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=20.40 E-value=1e+03 Score=25.19 Aligned_cols=14 Identities=29% Similarity=0.389 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 002268 490 LKEELDVVRAQKLE 503 (944)
Q Consensus 490 LKeEId~~R~Qke~ 503 (944)
|...+...|.+.-.
T Consensus 138 l~~~l~~~r~~l~~ 151 (302)
T PF10186_consen 138 LQSQLARRRRQLIQ 151 (302)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444333
Done!