Query 002268
Match_columns 944
No_of_seqs 40 out of 42
Neff 3.3
Searched_HMMs 13730
Date Mon Mar 25 19:26:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002268.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/002268hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xria_ c.45.1.1 (A:) Putative 38.7 6.4 0.00047 34.5 2.2 33 1-36 2-34 (151)
2 d2cosa1 a.5.2.1 (A:8-48) Serin 37.2 16 0.0012 27.2 3.7 31 26-56 4-41 (41)
3 d1zu2a1 a.118.8.1 (A:1-145) Mi 23.0 63 0.0046 27.4 5.9 45 51-95 65-109 (145)
4 d2fa8a1 c.47.1.23 (A:4-89) Hyp 12.9 8.7 0.00063 32.7 -2.4 43 6-48 34-78 (86)
5 d1aopa2 d.58.36.1 (A:346-425) 11.6 24 0.0018 28.9 0.1 31 7-37 43-76 (80)
6 d1qvra2 c.37.1.20 (A:149-535) 11.5 3.1E+02 0.022 27.5 8.7 21 484-504 312-332 (387)
7 d1k4ta1 a.2.8.1 (A:641-712) Eu 9.9 4.2E+02 0.031 21.5 7.8 53 421-473 1-58 (72)
8 d1nkpa_ a.38.1.1 (A:) Myc prot 9.0 2E+02 0.015 22.9 5.1 43 686-728 43-88 (88)
9 d2qifa1 d.58.17.1 (A:1-69) Cop 8.4 70 0.0051 24.5 1.8 29 3-37 36-66 (69)
10 d1p6ta1 d.58.17.1 (A:1-72) Pot 8.1 47 0.0034 25.7 0.6 29 3-37 40-70 (72)
No 1
>d1xria_ c.45.1.1 (A:) Putative phosphatase At1g05000 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=38.67 E-value=6.4 Score=34.54 Aligned_cols=33 Identities=18% Similarity=0.339 Sum_probs=26.6
Q ss_pred CCCCCCCcccccCCCccccCCCCcHHHHHHHHHccC
Q 002268 1 MASPSSGRLAITPSSRVLQSPLSDESIWKRLKEAGL 36 (944)
Q Consensus 1 ~~~p~~~~l~~~~~~rv~~~~~~d~~iWkr~~eaG~ 36 (944)
|.||+.++ .|.+| |.||+..+.+.|..|+..|+
T Consensus 2 ~~pp~nF~-~V~~~--lyRs~~~t~~~~~~L~~lgI 34 (151)
T d1xria_ 2 LIPPLNFS-MVDNG--IFRSGFPDSANFSFLQTLGL 34 (151)
T ss_dssp BCCCTTCE-EEETT--EEEESCCCHHHHHHHHHHTC
T ss_pred CCCCcccc-eecCC--ceecCCCCHHHHHHHHHCCC
Confidence 34555554 48888 88999999999999999996
No 2
>d2cosa1 a.5.2.1 (A:8-48) Serine/threonine protein kinase LATS2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=37.24 E-value=16 Score=27.19 Aligned_cols=31 Identities=32% Similarity=0.501 Sum_probs=25.1
Q ss_pred HHHHHHHHccCChHHHhh-------hcHHHHHHHHHHH
Q 002268 26 SIWKRLKEAGLDEVSIKR-------RDKAALIAYIAKL 56 (944)
Q Consensus 26 ~iWkr~~eaG~de~s~~r-------rD~~aLia~IskL 56 (944)
.+.+-|.-||||++-.-| |.-+|.|+|||+.
T Consensus 4 QMlqdl~~aG~D~~m~iral~qt~~rsieaaie~iskm 41 (41)
T d2cosa1 4 QMLQELVNAGCDQEMAGRALKQTGSRSIEAALEYISKM 41 (41)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCcccHHHHHHHHhcC
Confidence 577889999999986543 7778999999984
No 3
>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=22.97 E-value=63 Score=27.41 Aligned_cols=45 Identities=11% Similarity=-0.040 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 002268 51 AYIAKLETEIFEHQHHMGLLILEKKELASKYEQIKASAEAAELLQ 95 (944)
Q Consensus 51 a~IskLE~ElydYQynMGLLLiEkKEwtSK~eel~qa~~eae~~l 95 (944)
.++.+|.-.-++.-||||.++.+...++.........+..|...+
T Consensus 65 ~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~ 109 (145)
T d1zu2a1 65 EEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFF 109 (145)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhh
Confidence 455566677788889999999999887766665555555555444
No 4
>d2fa8a1 c.47.1.23 (A:4-89) Hypothetical protein Atu0228 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=12.85 E-value=8.7 Score=32.73 Aligned_cols=43 Identities=21% Similarity=0.536 Sum_probs=30.0
Q ss_pred CCcccccCCC-ccccCCCCcHHHHHHHHHccC-ChHHHhhhcHHH
Q 002268 6 SGRLAITPSS-RVLQSPLSDESIWKRLKEAGL-DEVSIKRRDKAA 48 (944)
Q Consensus 6 ~~~l~~~~~~-rv~~~~~~d~~iWkr~~eaG~-de~s~~rrD~~a 48 (944)
.+.+|..||+ ++..=.+.+.-+|.|...-|| |...|+.+=|..
T Consensus 34 i~evsL~P~~~G~FeV~v~g~li~srk~~ggFPd~kelkq~VRd~ 78 (86)
T d2fa8a1 34 IGEVSLIPSTGGLFEITVDGTIIWERKRDGGFPGPKELKQRIRDL 78 (86)
T ss_dssp CSEEEEEEECTTCEEEEETTEEEEEHHHHTSCCCHHHHHHHHHHH
T ss_pred CceEEEEECCCeEEEEEECCEEEEEeccCCCCCCHHHHHHHHHHh
Confidence 4566666655 444444667778999999999 888887765543
No 5
>d1aopa2 d.58.36.1 (A:346-425) Sulfite reductase, domains 1 and 3 {Escherichia coli [TaxId: 562]}
Probab=11.63 E-value=24 Score=28.91 Aligned_cols=31 Identities=29% Similarity=0.412 Sum_probs=22.5
Q ss_pred CcccccCCCccccCCCCcHH---HHHHHHHccCC
Q 002268 7 GRLAITPSSRVLQSPLSDES---IWKRLKEAGLD 37 (944)
Q Consensus 7 ~~l~~~~~~rv~~~~~~d~~---iWkr~~eaG~d 37 (944)
|.+-+||.|.++=..+++++ +|..|++.||+
T Consensus 43 g~irlT~~Qnlil~~V~~~~~~~i~~~L~~~Gl~ 76 (80)
T d1aopa2 43 GDFRITANQNLIIAGVPESEKAKIEKIAKESGLM 76 (80)
T ss_dssp SEEEECTTSCEEEEEEEGGGHHHHHHHHHHTTTT
T ss_pred CcEEEcCCCCeEecCCCHHHHHHHHHHHHHcCCC
Confidence 44557888876655555555 79999999983
No 6
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=11.49 E-value=3.1e+02 Score=27.55 Aligned_cols=21 Identities=19% Similarity=-0.029 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 002268 484 SVLEIKLKEELDVVRAQKLEL 504 (944)
Q Consensus 484 ~~Lq~eLKeEId~~R~Qke~L 504 (944)
..-..+||++|+.+|.+.+..
T Consensus 312 l~~i~~Lk~~Le~lr~~le~A 332 (387)
T d1qvra2 312 LRKLREAQHRLDEVRREIELA 332 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333467888888888876543
No 7
>d1k4ta1 a.2.8.1 (A:641-712) Eukaryotic DNA topoisomerase I, dispensable insert domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.90 E-value=4.2e+02 Score=21.48 Aligned_cols=53 Identities=25% Similarity=0.426 Sum_probs=38.7
Q ss_pred HhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-----HhhhhhHHHHHHHHHHHhhh
Q 002268 421 ENKLIAFEKEADLKKSLLQKEKEEVNIIKSDLQ-----KSLSSLDEKKKQVNCAKDKL 473 (944)
Q Consensus 421 EksL~aeEK~le~ek~~L~~ekEel~~lK~dlE-----K~~a~~e~q~~qi~ee~e~L 473 (944)
|+||......|...+.+|..-+.++..++.|.- ++...++..+.++.--.++|
T Consensus 1 eKsMenLq~KI~~Kk~qi~~a~~e~K~ak~d~k~~~~~k~k~~~ekKkK~leRL~EQL 58 (72)
T d1k4ta1 1 EKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQL 58 (72)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888898889999888888888888775 55555665555555444443
No 8
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.98 E-value=2e+02 Score=22.89 Aligned_cols=43 Identities=21% Similarity=0.292 Sum_probs=26.2
Q ss_pred HHHHHHhhHHHHHHHHH---HHHHHHHHHHHhhHHHHHHHHHhhhh
Q 002268 686 EWAELNNSIEELMVQRQ---KLEEQRQLLHADREEIQAESERLKKL 728 (944)
Q Consensus 686 e~~Em~kdIeeL~~ls~---KLk~QRE~~~~eRe~f~~~vE~lK~c 728 (944)
-+.-+..-|+-+..|.. .|....+.+......+...+.+|.+|
T Consensus 43 K~~iL~~A~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~~L~gc 88 (88)
T d1nkpa_ 43 KVVILKKATAYILSVQAEEQKLISEEDLLRKRREQLKHKLEQLGGC 88 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45555555555554444 44555556666666777777777776
No 9
>d2qifa1 d.58.17.1 (A:1-69) Copper chaperone {Bacillus subtilis, CopZ [TaxId: 1423]}
Probab=8.38 E-value=70 Score=24.51 Aligned_cols=29 Identities=17% Similarity=0.428 Sum_probs=0.0
Q ss_pred CCCCCccccc--CCCccccCCCCcHHHHHHHHHccCC
Q 002268 3 SPSSGRLAIT--PSSRVLQSPLSDESIWKRLKEAGLD 37 (944)
Q Consensus 3 ~p~~~~l~~~--~~~rv~~~~~~d~~iWkr~~eaG~d 37 (944)
+++.|.++|. |+. ++.+++=+.+.++||+
T Consensus 36 ~~~~~~v~v~~d~~~------~~~~~i~~~i~~~Gy~ 66 (69)
T d2qifa1 36 NLEAGKVDVSFDADK------VSVKDIADAIEDQGYD 66 (69)
T ss_dssp ETTTTEEEEEECTTT------CCHHHHHHHHHHTTCE
T ss_pred ECCCCEEEEEECCCC------CCHHHHHHHHHHhCCc
No 10
>d1p6ta1 d.58.17.1 (A:1-72) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]}
Probab=8.14 E-value=47 Score=25.69 Aligned_cols=29 Identities=10% Similarity=0.341 Sum_probs=0.0
Q ss_pred CCCCCccccc--CCCccccCCCCcHHHHHHHHHccCC
Q 002268 3 SPSSGRLAIT--PSSRVLQSPLSDESIWKRLKEAGLD 37 (944)
Q Consensus 3 ~p~~~~l~~~--~~~rv~~~~~~d~~iWkr~~eaG~d 37 (944)
+|+.|.++|+ ||. ++.+++=+.++++||+
T Consensus 40 ~~~~~~~~v~~d~~~------~~~~~i~~~i~~~Gy~ 70 (72)
T d1p6ta1 40 NLATETVNVIYDPAE------TGTAAIQEKIEKLGYH 70 (72)
T ss_dssp EGGGTEEEEEECTTT------SCHHHHHHHHHHHTCE
T ss_pred EcCCCEEEEEECCCC------CCHHHHHHHHHHhCCc
Done!