Query 002269
Match_columns 944
No_of_seqs 166 out of 370
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 19:28:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002269.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002269hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bg1_B Nucleoporin NUP145; NPC 100.0 2.3E-74 7.9E-79 660.2 27.0 316 492-864 118-442 (442)
2 3jro_A Fusion protein of prote 100.0 3E-63 1E-67 612.6 23.9 318 492-866 427-753 (753)
3 2q5x_A Nuclear pore complex pr 100.0 4.3E-53 1.5E-57 415.9 14.2 144 43-191 3-155 (155)
4 1ko6_A Nuclear pore complex pr 100.0 6.1E-48 2.1E-52 388.4 15.9 143 37-184 36-187 (187)
5 3nf5_A Nucleoporin NUP116; nuc 100.0 5E-48 1.7E-52 380.2 14.9 134 43-185 10-156 (164)
6 3pbp_B Nucleoporin NUP116/NSP1 100.0 2.6E-47 9E-52 371.1 16.1 134 46-185 2-145 (148)
7 3kep_A Nucleoporin NUP145; nuc 100.0 3.5E-47 1.2E-51 377.6 15.0 140 40-185 13-167 (174)
8 3f3f_C Nucleoporin NUP85; stru 96.5 0.04 1.4E-06 64.4 16.5 287 547-878 206-567 (570)
9 3mzk_B Protein transport prote 93.6 0.053 1.8E-06 62.1 5.1 102 572-675 152-266 (441)
10 2pm7_A Protein WEB1, protein t 93.1 0.17 6E-06 57.2 8.3 96 572-673 145-241 (399)
11 1ko6_B Nuclear pore complex pr 90.0 0.075 2.6E-06 43.7 0.7 13 185-197 1-13 (64)
12 3iko_C Nucleoporin NUP84; NPC, 79.2 5.7 0.00019 45.7 9.7 221 573-806 180-438 (460)
13 2qx5_A Nucleoporin NIC96; mRNA 46.7 16 0.00056 43.7 5.2 278 573-891 155-487 (661)
14 2ffg_A YKUJ; structural genomi 35.9 31 0.0011 30.0 3.8 33 149-181 4-52 (87)
15 1xi4_A Clathrin heavy chain; a 23.3 3.4E+02 0.012 35.7 11.6 87 782-881 1053-1139(1630)
No 1
>3bg1_B Nucleoporin NUP145; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Saccharomyces cerevisiae} PDB: 3bg0_B 3iko_B
Probab=100.00 E-value=2.3e-74 Score=660.24 Aligned_cols=316 Identities=20% Similarity=0.323 Sum_probs=275.1
Q ss_pred hhHHHHHHHHHHhcCCccCCCCCCCCCCCchhhhhhhccCCCCccccccchhHHHHHHHHHHHHHhhhhhhhhhcccccc
Q 002269 492 MHQVMVWELIKVLFSERENGGQLRSEGDDNEEEMMQDIKDGPPEFDLEALPLIRRAEFSCWLKESVCHRVQEDVSSLDES 571 (944)
Q Consensus 492 ~~e~~VW~L~saLfd~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~RR~~Ls~WL~~~v~~~v~~ei~~~~~~ 571 (944)
.++.+||+||+||||+.+.+. +.+.+. ++.++..+.||++|++||++.+++.+++++. .++
T Consensus 118 ~~e~~vW~L~saLf~~~~~~~-----~~~~~~------------~~~~~~~~~Rr~~l~~WL~~~~~~~v~~~~~--~~~ 178 (442)
T 3bg1_B 118 SSDYNLWKLSSILFDPVSYPY-----KTDNDQ------------VKMALLKKERHCRLTSWIVSQIGPEIEEKIR--NSS 178 (442)
T ss_dssp SHHHHHHHHHHHHTSCCCCSS-----CCSCHH------------HHHHHHHHHHHHHHHHHHHHHSHHHHHHHHH--TCS
T ss_pred hHHhHHHHHHHHhcCCCcCcc-----cccchh------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCC
Confidence 588999999999999865321 111110 1124556889999999999999998888773 356
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHcCCCchhhhhhhcCCCchhHHHH-HHHHHHHHHcCCCcccChHHHHHHHHHhhCCc
Q 002269 572 NYLKHIFLLLTGRQLDSSVELAASRGDVRLACLLSQAGGSTVSRSDI-AHQLDLWRVNGLDFKFIEKDRIRLYELLAGHI 650 (944)
Q Consensus 572 ~~le~if~lL~g~~I~eAc~~Ai~sgd~rLAtLlsq~gs~~~~r~~l-~~QL~~W~~~~~d~~~I~~~r~kIY~LLAG~~ 650 (944)
+++|+||.+||||+|++||++|+++||+|||+||||+||++.+|++| ++||+.|++. + .+|+++|+|||+||||++
T Consensus 179 ~~~e~i~~~L~~~~v~eA~~~Ai~~~d~rLA~Llsq~g~~~~~r~~la~~QL~~W~~~--~-~~I~~~~~kiY~LLAG~~ 255 (442)
T 3bg1_B 179 NEIEQIFLYLLLNDVVRASKLAIESKNGHLSVLISYLGSNDPRIRDLAELQLQKWSTG--G-CSIDKNISKIYKLLSGSP 255 (442)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHTSCCHHHHHHHHHHHHHTTSS--C-CCSCHHHHHHHHHHHSCS
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHCCCcHHHHHHHHhcCCchHHHHHHHHHHHHHHHh--C-ccCCHHHHHHHHHhcCCc
Confidence 88999999999999999999999999999999999999999999999 9999999988 4 699999999999999998
Q ss_pred cccc----C-CCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHhcCCCCCCCCCccccCCCCCCCCCCCCCCCCChhHH
Q 002269 651 HSSL----N-DVTIDWKRFLGLLMWYQLPPETSLAIVFQTYQHLLDDGKAPLPVPIYVDEGPIDEPIDWSGNERNDLSYY 725 (944)
Q Consensus 651 ~~~~----~-~~~LdW~ralgL~LWYg~~~~~si~~av~~y~~~~~~~~~~~P~P~y~~~~~~~~~~~~~~~~~~D~~y~ 725 (944)
+... . ..+|||+|+||||||||+++++||++||..|++++. +| .+|++|+
T Consensus 256 ~e~~~~~~~i~~~LdW~ralgl~LWY~~~~~~si~~av~~f~~~~~-----~P--------------------~~D~~~~ 310 (442)
T 3bg1_B 256 FEGLFSLKELESEFSWLCLLNLTLCYGQIDEYSLESLVQSHLDKFS-----LP--------------------YDDPIGV 310 (442)
T ss_dssp TTSTTCSGGGGGTSCHHHHHHHHHHTCCCSSCCHHHHHHHHHHHSC-----CC--------------------TTCHHHH
T ss_pred ccccccchhcccCCCHHHHHHHHhhcCCCCCCCHHHHHHHHHHhcc-----CC--------------------CCCHHHH
Confidence 5331 1 258999999999999999999999999999998776 22 3699999
Q ss_pred HHHhcccCCCcccchhhhhcccCCCCCCCCcchhHHHHHHHHhcCCCC--CchhhHHHHHHHHHHHhCCCchhHHHHHhc
Q 002269 726 LMLLHASGESKFGSLKTMFNALSSTYDPLDYHMIWHQREVLAAVGVIS--SNDLQILDMGLVSQLLCQGKCHWAIYVVLH 803 (944)
Q Consensus 726 LLkL~~~~~~~~~~l~~~l~p~~~s~~~lD~rLsW~l~~vL~a~g~~~--~~~~~~Lt~~fA~QLe~~glw~wAifVllh 803 (944)
||||||++ .+++++|+|.+++++||||||+|||+++|+++|+.. ....++||++||+|||+.|+|+|||||+||
T Consensus 311 LLkLya~~----~~le~~L~p~s~s~~~lD~rLsW~L~~~L~a~g~~~~~~~~~d~L~~~fA~QLe~~Glw~wAifVllH 386 (442)
T 3bg1_B 311 IFQLYAAN----ENTEKLYKEVRQRTNALDVQFCWYLIQTLRFNGTRVFSKETSDEATFAFAAQLEFAQLHGHSLFVSCF 386 (442)
T ss_dssp HHHHHHSC----TTHHHHHHHHHTTCCCSCHHHHHHHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHccC----CCHHHHhChhccCCCcccchhHHHHHHHHHhCCCcccChhHHHHHHHHHHHHHHHCCCcHHHHHHHhh
Confidence 99999988 269999999999999999999999999999999844 446799999999999999999999999999
Q ss_pred ccCCCCChHHHHHHHHHHHHhhcccCCChhHHHHHHH-HhCCCHHHHHHHHHHHHHhcCCHH
Q 002269 804 MPRCDDYPYLQATLIREILFQYCESWSSEESQRKFIE-ALGVPSEWLHEAMAVYYNYYGELS 864 (944)
Q Consensus 804 l~d~~~~~~~R~~avr~lL~r~~~~~~~~~~~~~fL~-~L~IP~~WI~eAkAl~a~~~~d~~ 864 (944)
|+|+. .|+++||++|.|||..+.+ + .+.||. +|+||++|||||||++|+|+||++
T Consensus 387 l~d~~----~Re~avr~lL~R~~~~~~~-~-~~~fL~~~L~IP~~WI~eAkAl~a~~~gd~~ 442 (442)
T 3bg1_B 387 LNDDK----AAEDTIKRLVMREITLLRA-S-TNDHILNRLKIPSQLIFNAQALKDRYEGNYL 442 (442)
T ss_dssp CCCHH----HHHHHHHHHHHHSTGGGST-T-TTSCHHHHTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCChH----HHHHHHHHHHHhhcccccc-H-HHHHHHHHhCCCHHHHHHHHHHHHHhcCCCC
Confidence 98754 5999999999999987753 2 366775 999999999999999999999974
No 2
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-63 Score=612.65 Aligned_cols=318 Identities=19% Similarity=0.295 Sum_probs=270.2
Q ss_pred hhHHHHHHHHHHhcCCccCCCCCCCCCCCchhhhhhhccCCCCccccccchhHHHHHHHHHHHHHhhhhhhhhhcccccc
Q 002269 492 MHQVMVWELIKVLFSERENGGQLRSEGDDNEEEMMQDIKDGPPEFDLEALPLIRRAEFSCWLKESVCHRVQEDVSSLDES 571 (944)
Q Consensus 492 ~~e~~VW~L~saLfd~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~RR~~Ls~WL~~~v~~~v~~ei~~~~~~ 571 (944)
.+|+.||+||+||||+.++... ..+ ..+..++....||+.|++||++.+.+.++.++.. ..
T Consensus 427 ~~e~~~w~L~~~Lf~~~~~~~~----~~~-------------~~~~~~~~~~~r~~~~~~wl~~~~~~~~~~~~~~--~~ 487 (753)
T 3jro_A 427 SSDYNLWKLSSILFDPVSYPYK----TDN-------------DQVKMALLKKERHCRLTSWIVSQIGPEIEEKIRN--SS 487 (753)
T ss_dssp SHHHHHHHHHHHHTSCCCCSSC----CSS-------------TTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTS--CS
T ss_pred chHHHHHHHHHHHcCCCcCCcc----ccc-------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc--cC
Confidence 4789999999999998764321 111 1112233457899999999999998888887753 33
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHcCCCchhhhhhhcCCC-chhHHHHHHHHHHHHHcCCCcccChHHHHHHHHHhhCCc
Q 002269 572 NYLKHIFLLLTGRQLDSSVELAASRGDVRLACLLSQAGGS-TVSRSDIAHQLDLWRVNGLDFKFIEKDRIRLYELLAGHI 650 (944)
Q Consensus 572 ~~le~if~lL~g~~I~eAc~~Ai~sgd~rLAtLlsq~gs~-~~~r~~l~~QL~~W~~~~~d~~~I~~~r~kIY~LLAG~~ 650 (944)
+++++||.+|++|+|++||++|+++||+|||+||+|+||+ ..+|.++++||+.|++.+. +|++.++|||+||||++
T Consensus 488 ~~~~~i~~~L~~~~i~~A~~~a~~~~~~~la~ll~~~~~~~~~~~~~~~~Ql~~W~~~~~---~i~~~~~~iy~llag~~ 564 (753)
T 3jro_A 488 NEIEQIFLYLLLNDVVRASKLAIESKNGHLSVLISYLGSNDPRIRDLAELQLQKWSTGGC---SIDKNISKIYKLLSGSP 564 (753)
T ss_dssp CTTHHHHHHTTTTCHHHHHHHHHHTTCCHHHHHGGGCSSCCHHHHHHHHHHHHHHHTTTC---CCCHHHHHHHHTSSSCC
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHcCChHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHhCCCc
Confidence 5699999999999999999999999999999999999997 6689999999999999883 89999999999999998
Q ss_pred ccccC-----CCCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHhcCCCCCCCCCccccCCCCCCCCCCCCCCCCChhHH
Q 002269 651 HSSLN-----DVTIDWKRFLGLLMWYQLPPETSLAIVFQTYQHLLDDGKAPLPVPIYVDEGPIDEPIDWSGNERNDLSYY 725 (944)
Q Consensus 651 ~~~~~-----~~~LdW~ralgL~LWYg~~~~~si~~av~~y~~~~~~~~~~~P~P~y~~~~~~~~~~~~~~~~~~D~~y~ 725 (944)
.+... ..+|||+|+||||||||++++.+|+++|..|++++. .+..|++|+
T Consensus 565 ~~~~~~~~~~~~~l~W~~~l~~~lwy~~~~~~~~~~~~~~~~~~~~-------------------------~~~~d~~~~ 619 (753)
T 3jro_A 565 FEGLFSLKELESEFSWLCLLNLTLCYGQIDEYSLESLVQSHLDKFS-------------------------LPYDDPIGV 619 (753)
T ss_dssp SSSTTCCGGGGTTSCHHHHHHHHHHTSCTTTSCHHHHHHHHHTTCC-------------------------CCTTCHHHH
T ss_pred cccccchhhccCCCCHHHHHHHHHHcCCCCCCCHHHHHHHHHhccC-------------------------CCccCHHHH
Confidence 65421 248999999999999999999999999999975332 124699999
Q ss_pred HHHhcccCCCcccchhhhhcccCCCCCCCCcchhHHHHHHHHhcCCCCC--chhhHHHHHHHHHHHhCCCchhHHHHHhc
Q 002269 726 LMLLHASGESKFGSLKTMFNALSSTYDPLDYHMIWHQREVLAAVGVISS--NDLQILDMGLVSQLLCQGKCHWAIYVVLH 803 (944)
Q Consensus 726 LLkL~~~~~~~~~~l~~~l~p~~~s~~~lD~rLsW~l~~vL~a~g~~~~--~~~~~Lt~~fA~QLe~~glw~wAifVllh 803 (944)
|||||+.. .+++.+|.|++++++||||||+|||+++|+++|+.+. ...++||++||+|||+.|+|+||||||||
T Consensus 620 ll~l~~~~----~~~~~~l~~~~~~~~~ld~~l~w~l~~~l~~~~~~~~~~~~~~~l~~~~a~qL~~~g~~~~a~fv~~h 695 (753)
T 3jro_A 620 IFQLYAAN----ENTEKLYKEVRQRTNALDVQFCWYLIQTLRFNGTRVFSKETSDEATFAFAAQLEFAQLHGHSLFVSCF 695 (753)
T ss_dssp HHHHHHCS----TTHHHHHHHHHTTCTTSCHHHHHHHHHHTTTTTCSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHhcCC----CCHHHhhccccCCCCCCccccHHHHHHHHHhcCCCccChhhHHHHHHHHHHHHHhCCCchhHHHHhhh
Confidence 99999943 2799999999999999999999999999999998654 35689999999999999999999999999
Q ss_pred ccCCCCChHHHHHHHHHHHHhhcccCCChhHHHHHHH-HhCCCHHHHHHHHHHHHHhcCCHHHH
Q 002269 804 MPRCDDYPYLQATLIREILFQYCESWSSEESQRKFIE-ALGVPSEWLHEAMAVYYNYYGELSKA 866 (944)
Q Consensus 804 l~d~~~~~~~R~~avr~lL~r~~~~~~~~~~~~~fL~-~L~IP~~WI~eAkAl~a~~~~d~~~e 866 (944)
|+|+. .|+++||++|.|||..+.+++ ..||. +|+||++|||||||++|+|+||++.|
T Consensus 696 ~~~~~----~r~~~i~~~l~r~~~~~~~~~--~~~l~~~l~ip~~wi~~a~a~~~~~~~~~~~e 753 (753)
T 3jro_A 696 LNDDK----AAEDTIKRLVMREITLLRAST--NDHILNRLKIPSQLIFNAQALKDRYEGNYLSE 753 (753)
T ss_dssp CSCHH----HHHHHHHHHHHHSCTTSSTTT--TTTTTTTTTCCHHHHHHHHHHHHHHHHHHC--
T ss_pred CCChH----HHHHHHHHHHHhhhhhcCcch--hhhHHhccCCCHHHHHHHHHHHHHhcCCcccC
Confidence 98754 599999999999998775433 35676 99999999999999999999999876
No 3
>2q5x_A Nuclear pore complex protein NUP98; nucleoporin, autoproteolysis, precursor, protein transport; 1.90A {Homo sapiens} PDB: 2q5y_A 3tkn_C
Probab=100.00 E-value=4.3e-53 Score=415.92 Aligned_cols=144 Identities=40% Similarity=0.699 Sum_probs=128.9
Q ss_pred cccCCCeeecCCHHHHhccccCCCCCccccCCcEEeccceEEEEeccccccCCCCccceEEEeccEEEEecCCCCCCCCC
Q 002269 43 VLCSPDYYTEPLLNDLGKREVIDPGYSSRVPDFTVGRLGYGYVKFLGNTDVRWLDLDQIVKFGRHEIVVYEDESSKPEVG 122 (944)
Q Consensus 43 ~l~~~~Y~~~Ps~~~L~~~~~~~~~~l~~v~~f~vgr~g~G~i~f~~~vdl~~~~ld~iV~~~~~~v~vYp~~~~kP~~G 122 (944)
+|+++||||+||++||++|+.++ .+++|+||||||+|||+|+|++||||+++|||+||+|++++|+||||++.|||+|
T Consensus 3 ~l~~~~Y~~~PsieeL~~~~~~~--~~~~V~~FtVgR~gyG~I~f~~pvDl~~ldLd~IV~~~~~~v~VYpd~~~KPpvG 80 (155)
T 2q5x_A 3 ILTKVGYYTIPSMDDLAKITNEK--GECIVSDFTIGRKGYGSIYFEGDVNLTNLNLDDIVHIRRKEVVVYLDDNQKPPVG 80 (155)
T ss_dssp BCCSTTEEEESCHHHHHHHSCTT--SCCEEEEEEEEETTTEEEEEEEEEECTTCBHHHHEEEETTEEEECC----CCCTT
T ss_pred EEeCCCeEEcCCHHHHHhhhhhc--cccEECCEEEEeeeEEEEEeCcceeeccCCcccEEEEccCEEEEeCCCCCCCCCC
Confidence 68999999999999999997543 2359999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccEEEEEecccccccCCCCCCC----hHH-----HHHHHHHHhhhcCCEEEEEeCCCcEEEEEECCcccccCCC
Q 002269 123 QGLNKAAEVTLFLQGRYLSLKLKEGD----SDD-----FVKKMKERTERQGARFVSFDPVSGEWKFLVVHFSRFGLSD 191 (944)
Q Consensus 123 ~gLN~~a~itl~~~~~~~~~~~~~~~----~~~-----~~~~l~~~~~~~~~~f~~y~~~tg~w~f~V~HFs~YGL~D 191 (944)
+||||||+|||+ + |||.++++++ +++ |.++|+++|+++||+||+|||+||+|+|+|+|||+|||+|
T Consensus 81 ~GLN~~A~ITL~-~--~~P~~k~~~~~i~~~~~~~~~~~~~~l~~~~~~~g~~FvsYd~~tG~W~F~V~HFS~ygl~d 155 (155)
T 2q5x_A 81 EGLNRKAEVTLD-G--VWPTDKTSRCLIKSPDRLADINYEGRLEAVSRKQGAQFKEYRPETGSWVFKVSHFAKYGLQD 155 (155)
T ss_dssp BTTBSCEEEEEC-S--CCCBCTTTCCBCCCHHHHHHTTHHHHHHHHHHHTTCEEEEEETTTTEEEEEESSCSCEECCC
T ss_pred CCcCcCEEEEEe-e--eEecCCCcCccccCcchhhhHHHHHHHHHHhhcCCCEEEEEeCCCcEEEEEeCCccccccCC
Confidence 999999999994 4 5558888765 333 8999999999999999999999999999999999999987
No 4
>1ko6_A Nuclear pore complex protein NUP98; nucleoporin, autoproteolysis, transferase; 3.00A {Homo sapiens} SCOP: b.119.1.1
Probab=100.00 E-value=6.1e-48 Score=388.41 Aligned_cols=143 Identities=38% Similarity=0.629 Sum_probs=130.4
Q ss_pred CCCCCCcccCCCeeecCCHHHHhccccCCCCCccccCCcEEeccceEEEEeccccccCCCCccceEEEeccEEEEecCCC
Q 002269 37 NGDSLPVLCSPDYYTEPLLNDLGKREVIDPGYSSRVPDFTVGRLGYGYVKFLGNTDVRWLDLDQIVKFGRHEIVVYEDES 116 (944)
Q Consensus 37 ~~~~~p~l~~~~Y~~~Ps~~~L~~~~~~~~~~l~~v~~f~vgr~g~G~i~f~~~vdl~~~~ld~iV~~~~~~v~vYp~~~ 116 (944)
+.+..|+|+++||||+||++||++|+..+ +|++|+||||||+|||+|+|++||||+++|||+||+|++++|+||||+.
T Consensus 36 ~~p~g~~L~~~~Y~~~PSieeL~~~~~~~--~l~~V~~FtVGR~gyG~I~f~~pVDL~~ldLd~IV~f~~k~v~VYpd~~ 113 (187)
T 1ko6_A 36 MHPAGIILTKVGYYTIPSMDDLAKITNEK--GECIVSDFTIGRKGYGSIYFEGDVNLTNLNLDDIVHIRRKEVVVYLDDN 113 (187)
T ss_dssp CCSSCCBCCSTTEEEESCHHHHHHHSCTT--SCCEESSEEEEETTTEEEEECSCEECTTCBHHHHEEEETTEEEESSSTT
T ss_pred cCCCCceecCCCeeECCCHHHHHhhcchh--hhceecceEEEeeeEEEEEeCCceeeccCCcceEEEeccCEEEEeCCCC
Confidence 45567899999999999999999997543 3669999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcccEEEEEecccccccCCCCCCC----hH-----HHHHHHHHHhhhcCCEEEEEeCCCcEEEEEECCc
Q 002269 117 SKPEVGQGLNKAAEVTLFLQGRYLSLKLKEGD----SD-----DFVKKMKERTERQGARFVSFDPVSGEWKFLVVHF 184 (944)
Q Consensus 117 ~kP~~G~gLN~~a~itl~~~~~~~~~~~~~~~----~~-----~~~~~l~~~~~~~~~~f~~y~~~tg~w~f~V~HF 184 (944)
.|||+|+||||||+|||+ + |||.+|+++. ++ +|.++|+++|+++||+||+|||+||+|+|+|+||
T Consensus 114 ~KPpvG~GLN~pA~ITL~-~--~~P~dk~~~~~i~d~~~~~~~~~~~~l~r~~~~~ga~FvsYd~~tG~W~F~V~HF 187 (187)
T 1ko6_A 114 QKPPVGEGLNRKAEVTLD-G--VWPTDKTSRCLIKSPDRLADINYEGRLEAVSRKQGAQFKEYRPETGSWVFKVSHF 187 (187)
T ss_dssp SCCCTTSTTSSCEEEEEC-S--CCCCCTTTCSCCCCHHHHHHHTHHHHHHHHHHHTTCEEEEEEGGGTEEEEEESCC
T ss_pred CCCCCCCCcCcCEEEEEe-e--eEecCCCCCccccCcchhhHHHHHHHHHHHHhcCCCEEEEEeCCCcEEEEEeccC
Confidence 999999999999999994 4 5558988764 22 4899999999999999999999999999999999
No 5
>3nf5_A Nucleoporin NUP116; nuclear pore complex, glebs domain, structural genom 2, protein structure initiative; 1.94A {Candida glabrata}
Probab=100.00 E-value=5e-48 Score=380.20 Aligned_cols=134 Identities=27% Similarity=0.519 Sum_probs=123.9
Q ss_pred cccCCCeeecCCHHHHhccccCCCCCccccCCcEEeccceEEEEeccccccCCCCccc----eEEEeccEEEEecCCCCC
Q 002269 43 VLCSPDYYTEPLLNDLGKREVIDPGYSSRVPDFTVGRLGYGYVKFLGNTDVRWLDLDQ----IVKFGRHEIVVYEDESSK 118 (944)
Q Consensus 43 ~l~~~~Y~~~Ps~~~L~~~~~~~~~~l~~v~~f~vgr~g~G~i~f~~~vdl~~~~ld~----iV~~~~~~v~vYp~~~~k 118 (944)
+|+++||||+||+++|++|+..| |++|+||||||+|||+|+|++||||+++|||+ ||.|++++|+||||++.|
T Consensus 10 ~lt~~~Y~~~PSleeL~~m~~~~---l~~V~nFtVGR~gyG~I~F~~pVDL~~ldLd~i~g~iV~f~~k~v~VYpd~~~K 86 (164)
T 3nf5_A 10 EFVDENYYISPSLDTLATLSKYE---IQKVENLVVGNKQYGKIEFLDPVDLSDIPLGSICDDLVVFQPMSVLLYNNSTNV 86 (164)
T ss_dssp CCCCCSEEEESCHHHHHHCCHHH---HTSBCSCEEEETTTEEEEESSCBCCTTCCGGGTBTTTEEEETTEEEESTTCSCC
T ss_pred EEecCCEEEcCCHHHHHhcCHHH---hCcCCCeEEeeceEEEEEeCCceeccccChhHhcCCEEEEecCEEEEeCCcCCC
Confidence 78999999999999999999876 99999999999999999999999999999998 999999999999999999
Q ss_pred CCCCCCCcccEEEEEecccccccCCCCCCC---------hHHHHHHHHHHhhhcCCEEEEEeCCCcEEEEEECCcc
Q 002269 119 PEVGQGLNKAAEVTLFLQGRYLSLKLKEGD---------SDDFVKKMKERTERQGARFVSFDPVSGEWKFLVVHFS 185 (944)
Q Consensus 119 P~~G~gLN~~a~itl~~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~f~~y~~~tg~w~f~V~HFs 185 (944)
||+|+||||||+|||+ + |||.+|+++. +++|++||++ ++||+|++|||+||+|||+|+||-
T Consensus 87 PpvG~GLNvpA~ITL~-~--~~P~dk~t~~pi~d~~~~~~~~~i~rLk~---~~g~~FvsYd~~tG~W~F~V~H~~ 156 (164)
T 3nf5_A 87 PEKGKGLNVRARISCY-N--CYPLDKSTRKPIKDPNHRIMERYSEKLKK---IPHTHFESYDPASGTYCFTVDHAL 156 (164)
T ss_dssp CCTTSTTCSCEEEEEC-S--CCCBCTTTCCBCCCTTSTHHHHHHHHHHH---CTTCEEEEEETTTTEEEEEESSTT
T ss_pred CCCCCCcCcCEEEEEe-e--eEcCCCCCCccccCcchHHHHHHHHHHhc---cCCCEEEEEeCCCcEEEEEEcccc
Confidence 9999999999999994 4 5668887754 4677777776 589999999999999999999994
No 6
>3pbp_B Nucleoporin NUP116/NSP116; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 2aiv_A
Probab=100.00 E-value=2.6e-47 Score=371.13 Aligned_cols=134 Identities=25% Similarity=0.528 Sum_probs=121.2
Q ss_pred CCCeeecCCHHHHhccccCCCCCccccCCcEEeccceEEEEeccccccCCCCccc----eEEEeccEEEEecCCCCCCCC
Q 002269 46 SPDYYTEPLLNDLGKREVIDPGYSSRVPDFTVGRLGYGYVKFLGNTDVRWLDLDQ----IVKFGRHEIVVYEDESSKPEV 121 (944)
Q Consensus 46 ~~~Y~~~Ps~~~L~~~~~~~~~~l~~v~~f~vgr~g~G~i~f~~~vdl~~~~ld~----iV~~~~~~v~vYp~~~~kP~~ 121 (944)
++||||+||+++|++|+..| |++|+||+|||+|||+|+|++||||+++|||+ ||+|++++|+||||++.|||+
T Consensus 2 ~~~Y~~~PsleeL~~m~~~~---l~~V~~F~VGR~gyG~I~f~~pVDL~~l~Ld~i~g~iV~f~~~~v~VYpd~~~KPp~ 78 (148)
T 3pbp_B 2 NENYYISPSLDTLSSYSLLQ---LRKVPHLVVGHKSYGKIEFLEPVDLAGIPLTSLGGVIITFEPKTCIIYANLPNRPKR 78 (148)
T ss_dssp CTTEEEESCHHHHHHSCSST---TSSBCSCEEEETTTEEEEESSCBCCTTSCTTHHHHTSEEEETTEEEESCSSCCCCCT
T ss_pred CCCeEEcCCHHHHHhcCHHH---hccCCCeEEEeccEEEEEeCCceeccccChhhhcCCEEEEecCEEEEeCCccCCCCC
Confidence 67999999999999999776 99999999999999999999999999999998 999999999999999999999
Q ss_pred CCCCcccEEEEEecccccccCCCCCCCh------HHHHHHHHHHhhhcCCEEEEEeCCCcEEEEEECCcc
Q 002269 122 GQGLNKAAEVTLFLQGRYLSLKLKEGDS------DDFVKKMKERTERQGARFVSFDPVSGEWKFLVVHFS 185 (944)
Q Consensus 122 G~gLN~~a~itl~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~f~~y~~~tg~w~f~V~HFs 185 (944)
|+||||||+|||+ + |||.+|+++++ .++.++++++++++||+|++|||+||+|+|+|+||.
T Consensus 79 G~GLN~pA~ITL~-~--~~P~dk~t~~~i~d~~~~~~~~~i~rlk~~~g~~FvsYd~~tG~W~F~V~Hf~ 145 (148)
T 3pbp_B 79 GEGINVRARITCF-N--CYPVDKSTRKPIKDPNHQLVKRHIERLKKNPNSKFESYDADSGTYVFIVNHAA 145 (148)
T ss_dssp TSTTCSCEEEEES-C--CCCBCTTTCCBCCCTTSHHHHHHHHHHTSCSSSEEEEECTTTCCEEEEESCSC
T ss_pred CCCcCcCEEEEEe-e--eEcCCCCCcccccCcchHHHHHHHHHHhhcCCCEEEEEeCCCcEEEEEeeeee
Confidence 9999999999994 4 56688887541 345555666666799999999999999999999996
No 7
>3kep_A Nucleoporin NUP145; nuclear pore complex, NUP145-N,yeast, autoproteolysi protein maturation, post-translational modification; 1.82A {Saccharomyces cerevisiae} PDB: 3kes_A*
Probab=100.00 E-value=3.5e-47 Score=377.64 Aligned_cols=140 Identities=28% Similarity=0.521 Sum_probs=114.5
Q ss_pred CCCcccCCCeeecCCHHHHhccccCCCCCccccCCcEEeccceEEEEeccccccCCC--Ccc-----ceEEEe-ccEEEE
Q 002269 40 SLPVLCSPDYYTEPLLNDLGKREVIDPGYSSRVPDFTVGRLGYGYVKFLGNTDVRWL--DLD-----QIVKFG-RHEIVV 111 (944)
Q Consensus 40 ~~p~l~~~~Y~~~Ps~~~L~~~~~~~~~~l~~v~~f~vgr~g~G~i~f~~~vdl~~~--~ld-----~iV~~~-~~~v~v 111 (944)
..|+|+++||||+||+++|++|+..| |++|+||+|||+|||+|+|++||||+++ ||| +||.|+ +++|+|
T Consensus 13 ~~~kl~~~gY~~~PSleeL~~ms~~~---L~~V~nFtVGR~gyG~I~F~~pVDLs~l~~DLd~~l~g~IV~f~~~~~v~V 89 (174)
T 3kep_A 13 QHEKSSSFGYWCSPSPEQLERLSLKQ---LAAVSNFVIGRRGYGCITFQHDVDLTAFTKSFREELFGKIVIFRSSKTVEV 89 (174)
T ss_dssp -------CCEEEESCHHHHHTSCTTG---GGSBSSCEEEETTTEEEEESSCBCCGGGTTCHHHHHBTTTEEEETTTEEEE
T ss_pred ecceeCCCCEEEcCCHHHHHhcCHHH---hcccCCeEEeeceEEEEEeCCcEEhhhcccchhhhcCCcEEEECCCCEEEE
Confidence 47999999999999999999999765 9999999999999999999999999999 898 599999 999999
Q ss_pred ecCCCCCCCCCCCCcccEEEEEecccccccCCCCCCCh-------HHHHHHHHHHhhhcCCEEEEEeCCCcEEEEEECCc
Q 002269 112 YEDESSKPEVGQGLNKAAEVTLFLQGRYLSLKLKEGDS-------DDFVKKMKERTERQGARFVSFDPVSGEWKFLVVHF 184 (944)
Q Consensus 112 Yp~~~~kP~~G~gLN~~a~itl~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~f~~y~~~tg~w~f~V~HF 184 (944)
|||++.|||+|+||||||+||| ++ |||.+|+++++ .++.+.+++.++++||+|++|||+||+|||+|+||
T Consensus 90 Ypd~~~KPpvG~GLNvpA~ITL-~~--~~P~dk~t~~pi~d~~~l~~~~~~i~rLk~~~g~~FisYd~~tG~W~F~V~H~ 166 (174)
T 3kep_A 90 YPDEATKPMIGHGLNVPAIITL-EN--VYPVDKKTKKPMKDTTKFAEFQVFDRKLRSMREMNYISYNPFGGTWTFKVNHF 166 (174)
T ss_dssp CCSTTTCCCTTSTTCSCEEEEE-SS--CCCC----CCCCCCTTCHHHHHHHHHHHHHCSSSEEEEEETTTTEEEEEESCC
T ss_pred eCCCCCCCCCCCCcCcCEEEEE-ee--eEeCCCCCCccccCchhhHHHHHHHHHHhhcCCCEEEEEeCCCcEEEEEEecc
Confidence 9999999999999999999999 44 55588877541 33444444444469999999999999999999999
Q ss_pred c
Q 002269 185 S 185 (944)
Q Consensus 185 s 185 (944)
-
T Consensus 167 ~ 167 (174)
T 3kep_A 167 E 167 (174)
T ss_dssp C
T ss_pred c
Confidence 5
No 8
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=96.51 E-value=0.04 Score=64.39 Aligned_cols=287 Identities=13% Similarity=0.103 Sum_probs=143.5
Q ss_pred HHHHHHHHHHhhhhhhhh---hccc------c----cccHHHHHHHHHhcCCHHHHHHHHHHcCC--------Cc-----
Q 002269 547 AEFSCWLKESVCHRVQED---VSSL------D----ESNYLKHIFLLLTGRQLDSSVELAASRGD--------VR----- 600 (944)
Q Consensus 547 ~~Ls~WL~~~v~~~v~~e---i~~~------~----~~~~le~if~lL~g~~I~eAc~~Ai~sgd--------~r----- 600 (944)
+.|-+|+...-..-..++ |... . ....=.-|..+++.|..++|+.+...++. ..
T Consensus 206 e~Ll~WVN~~d~eP~~E~~~eVm~~~~~~~~~~P~eHp~FW~~v~~LvLRGl~~qA~~~L~~s~~~~~L~~~~~~~~~~i 285 (570)
T 3f3f_C 206 ESLLNWINRSDGEPDEEYIEQVFSVKDSTAGKKVFETQYFWKLLNQLVLRGLLSQAIGCIERSDLLPYLSDTCAVSFDAV 285 (570)
T ss_dssp HHHHHHHHHHCCCSCHHHHHHHTTC----CCSSSSCSHHHHHHHHHHHHTTCHHHHHHHHTTTTTTHHHHHSCHHHHHHH
T ss_pred HHHHHHHHhccCCCCHHHHHHHHhcccccCCCCCCCCccHHHHHHHHHHcccHHHHHHHHHhcccchhhcccChHHHHHH
Confidence 678899987653221222 2111 1 11223568889999999999999987775 22
Q ss_pred --hhhhhhhcCCCchhHHHHHHHHHHHHHcC---------CCcc---cChHHHHHHHHHhhCCcccccCCCCCCHHHHHH
Q 002269 601 --LACLLSQAGGSTVSRSDIAHQLDLWRVNG---------LDFK---FIEKDRIRLYELLAGHIHSSLNDVTIDWKRFLG 666 (944)
Q Consensus 601 --LAtLlsq~gs~~~~r~~l~~QL~~W~~~~---------~d~~---~I~~~r~kIY~LLAG~~~~~~~~~~LdW~ralg 666 (944)
|..||.+.... . ..|...|+..- ...+ -+-+...-||+||+|+.....+-.. +|..+|+
T Consensus 286 ~dli~LL~~yP~~---S---~~~fr~WK~~~~e~r~~l~~~~~~i~~ei~~~Ledll~Il~Gd~~~Il~~~~-tWYEal~ 358 (570)
T 3f3f_C 286 SDSIELLKQYPKD---S---SSTFREWKNLVLKLSQAFGSSATDISGELRDYIEDFLLVIGGNQRKILQYSR-TWYESFC 358 (570)
T ss_dssp HHHHHHHTTCCSS---C---HHHHHHHHHHHHHHHHHHHTSCCCSCHHHHHHHHHHHHHHHTCHHHHHHTCS-SHHHHHH
T ss_pred HHHHHHHHhCCCC---c---hHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHcCCHHHHHHHcc-cHHHHHh
Confidence 23334333322 1 33555666432 1111 0235567899999999764433222 8999999
Q ss_pred HHhhccCCCCCCHHHHHHHH-HHHhcCCCCCCCCCccccCCCCCCCCCCCCCCCCChhHHHHHhcccCCCcccchhhhhc
Q 002269 667 LLMWYQLPPETSLAIVFQTY-QHLLDDGKAPLPVPIYVDEGPIDEPIDWSGNERNDLSYYLMLLHASGESKFGSLKTMFN 745 (944)
Q Consensus 667 L~LWYg~~~~~si~~av~~y-~~~~~~~~~~~P~P~y~~~~~~~~~~~~~~~~~~D~~y~LLkL~~~~~~~~~~l~~~l~ 745 (944)
-.+-|-.|....+ ..| +.++.+. +|-+. ....-+|..+++ ..-. ..|+.+
T Consensus 359 allLy~~Pt~k~~----~~y~q~al~~~---p~d~~---------------~~~E~~~~~i~e---gni~--~VL~~l-- 409 (570)
T 3f3f_C 359 GFLLYYIPSLELS----AEYLQMSLEAN---VVDIT---------------NDWEQPCVDIIS---GKIH--SILPVM-- 409 (570)
T ss_dssp HHHHHTCCCGGGH----HHHHHHHHHHS---CCCTT---------------SSSHHHHHHHHT---TCCG--GGHHHH--
T ss_pred HheeeecCccccc----HHHHHHHHHhC---CCCcc---------------cHHHHHHHHHHc---cCHH--HHHHHH--
Confidence 8877766655333 333 3333321 11110 011123445443 2111 112211
Q ss_pred ccCCCCCCCCcchhHHHHHHHHhcCCCCCc-------------------h--------hhHHHHHHHHHHHh---CCCch
Q 002269 746 ALSSTYDPLDYHMIWHQREVLAAVGVISSN-------------------D--------LQILDMGLVSQLLC---QGKCH 795 (944)
Q Consensus 746 p~~~s~~~lD~rLsW~l~~vL~a~g~~~~~-------------------~--------~~~Lt~~fA~QLe~---~glw~ 795 (944)
..+|--+++|+..++.+.|.+... + ..-|-..||.+|.. ..+|+
T Consensus 410 ------q~ld~~~AA~vAdLle~~GlLe~~~~~~~~~~~l~~~~~~~~d~l~s~~~~l~eyLL~~~a~~~~~~~~~sLW~ 483 (570)
T 3f3f_C 410 ------ESLDSCTAAFTAMICEAKGLIENIFEGEKNSDDYSNEDNEMLEDLFSYRNGMASYMLNSFAFELCSLGDKELWP 483 (570)
T ss_dssp ------HHHCHHHHHHHHHHHHHHTSSCCCCCC--------------CCCSSSSSSCHHHHHHHHHHHHHHTSCCTTTHH
T ss_pred ------HHhhHHHHHHHHHHHHHhCcccchhhhccccccccccccccHhhhhcCcchHHHHHHHHHHhhcccccCCcchh
Confidence 135667889999998887765321 0 11155689998555 58999
Q ss_pred hHHHHHhcccCCCCChHHHHHHHHHHHHhhcccCCChhHHHH--HHHHhCCCHH--HHHHHHHHHHHhcCCHHHHHHHHH
Q 002269 796 WAIYVVLHMPRCDDYPYLQATLIREILFQYCESWSSEESQRK--FIEALGVPSE--WLHEAMAVYYNYYGELSKALEHFL 871 (944)
Q Consensus 796 wAifVllhl~d~~~~~~~R~~avr~lL~r~~~~~~~~~~~~~--fL~~L~IP~~--WI~eAkAl~a~~~~d~~~e~~~Ll 871 (944)
-||=++.|-+..+ ...=...|.++|. +.+.-+.++.++. +..+++.|.. =|++-.+.++.++|+...+..++.
T Consensus 484 vgI~yL~~~~~~~--~~~gr~~IselLp-r~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~~g~~geAL~~f~ 560 (570)
T 3f3f_C 484 VAIGLIALSATGT--RSAKKMVIAELLP-HYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLSAHNIIESIANFS 560 (570)
T ss_dssp HHHHHHHHCSSSC--HHHHHHHHHHHGG-GCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC----------------
T ss_pred HHHHHHhcCCccc--hhHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence 9999999976432 1122355666665 3433222332222 2248998863 344444556667888888889999
Q ss_pred HcccHHH
Q 002269 872 ECANWQK 878 (944)
Q Consensus 872 ~A~~~~e 878 (944)
+||.+..
T Consensus 561 rA~~~~~ 567 (570)
T 3f3f_C 561 RAGKYEL 567 (570)
T ss_dssp -------
T ss_pred HcCChhh
Confidence 9998864
No 9
>3mzk_B Protein transport protein SEC16; alpha-helical-stack, beta-propeller; 2.69A {Saccharomyces cerevisiae}
Probab=93.58 E-value=0.053 Score=62.07 Aligned_cols=102 Identities=16% Similarity=0.201 Sum_probs=69.7
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHcCCCchhhhhhhcCCCchhHHHHHHHHHHHHHcC---CCcccChHHHHHHHHHhhC
Q 002269 572 NYLKHIFLLLTGRQLDSSVELAASRGDVRLACLLSQAGGSTVSRSDIAHQLDLWRVNG---LDFKFIEKDRIRLYELLAG 648 (944)
Q Consensus 572 ~~le~if~lL~g~~I~eAc~~Ai~sgd~rLAtLlsq~gs~~~~r~~l~~QL~~W~~~~---~d~~~I~~~r~kIY~LLAG 648 (944)
...++|-.+|..|+.++|++.|++.+..=.|++||..++.+..++-++ +.-. ++.. ...+.+....+-||++++|
T Consensus 152 ~~~~~I~~~Ll~G~~e~Av~~al~~~lwa~ALlLAs~~g~e~~~~V~~-~y~~-~~~~~~~~~~~~~~~~Lr~Ly~v~sG 229 (441)
T 3mzk_B 152 NCQMRVLAFLQTGNHDEALRLALSKRDYAIALLVGSLMGKDRWSEVIQ-KYLY-EGFTAGPNDQKELAHFLLLIFQVFVG 229 (441)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHH-HHHH-CC------CTHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCCcHHHHHHHHHhcCHHHHHHHHH-HHHH-hhcccCCccccccccHHHHHHHHHcC
Confidence 347889999999999999999999999999999999988654333322 2211 1111 0001123344579999999
Q ss_pred CcccccCCC---------C-CCHHHHHHHHhhccCCC
Q 002269 649 HIHSSLNDV---------T-IDWKRFLGLLMWYQLPP 675 (944)
Q Consensus 649 ~~~~~~~~~---------~-LdW~ralgL~LWYg~~~ 675 (944)
++...+... + -+|+-.+++-|=|..+.
T Consensus 230 n~~~~V~~l~~~~~~~~~~l~~Wre~lA~IlsN~~~~ 266 (441)
T 3mzk_B 230 NSKMAIKSFYTNNETSQWASENWKSIVAAVLINIPEN 266 (441)
T ss_dssp CHHHHHHHHHHCHHHHHHHHHSHHHHHHHHHHTSCCC
T ss_pred CHHHHHHHhccCCccccchHhHHHHHHHHHHhCCCCc
Confidence 975433210 0 17999999999997653
No 10
>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B
Probab=93.10 E-value=0.17 Score=57.19 Aligned_cols=96 Identities=11% Similarity=0.128 Sum_probs=70.7
Q ss_pred cHHHHHHHHHhcCCHHHHHHHHHHcCCCchhhhhhhcCCCchhHHHHHHHHHHHHHcCCCcccChHHHHHHHHHhhCCcc
Q 002269 572 NYLKHIFLLLTGRQLDSSVELAASRGDVRLACLLSQAGGSTVSRSDIAHQLDLWRVNGLDFKFIEKDRIRLYELLAGHIH 651 (944)
Q Consensus 572 ~~le~if~lL~g~~I~eAc~~Ai~sgd~rLAtLlsq~gs~~~~r~~l~~QL~~W~~~~~d~~~I~~~r~kIY~LLAG~~~ 651 (944)
...+.|-.+|..|++++|+++|++.+.+-=|+|||..||.+-.+.-.++ .--++... -++..+-||.+.+|+..
T Consensus 145 ~~d~~I~~aLl~Gd~e~AV~~cl~~~r~adAllLA~~gg~el~~~~vq~--~Y~~k~~~----~~~~~rll~~iv~~n~~ 218 (399)
T 2pm7_A 145 NIEQTISKNLVSGNIKSAVKNSLENDLMMEAMVIALDSNNERLKESVKN--AYFAKYGS----KSSLSRILYSISKREVD 218 (399)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHTTCCCHHHHHHHHH--HHHHHHTT----SCHHHHHHHHHHTTCCH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHHHHHhcCHHHHHHHHHH--HHHHhccc----CchHHHHHHHHHccCHH
Confidence 4467788889999999999999999999999999999997654222221 12222221 12344469999999987
Q ss_pred cccCCCCC-CHHHHHHHHhhccC
Q 002269 652 SSLNDVTI-DWKRFLGLLMWYQL 673 (944)
Q Consensus 652 ~~~~~~~L-dW~ralgL~LWYg~ 673 (944)
..+...+| +|+-+|++-+=|..
T Consensus 219 d~V~~~~l~~WkE~La~i~t~a~ 241 (399)
T 2pm7_A 219 DLVENLDVSQWKFISKAIQNLYP 241 (399)
T ss_dssp HHHHHBCGGGHHHHHHHHHHHCT
T ss_pred HHHhcCChhhHHHHHHHHHhcCC
Confidence 65443445 89999999999984
No 11
>1ko6_B Nuclear pore complex protein NUP98; nucleoporin, autoproteolysis, transferase; 3.00A {Homo sapiens} SCOP: b.119.1.1
Probab=90.01 E-value=0.075 Score=43.69 Aligned_cols=13 Identities=38% Similarity=0.897 Sum_probs=11.3
Q ss_pred ccccCCCCccccc
Q 002269 185 SRFGLSDDEEDDI 197 (944)
Q Consensus 185 s~YGL~DdDdee~ 197 (944)
|||||.|+||||+
T Consensus 1 SKYGL~DSDEEEe 13 (64)
T 1ko6_B 1 SKYGLQDSDEEEE 13 (64)
T ss_pred CCcCccccchhhh
Confidence 8999999998764
No 12
>3iko_C Nucleoporin NUP84; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.20A {Saccharomyces cerevisiae} PDB: 3jro_C
Probab=79.23 E-value=5.7 Score=45.66 Aligned_cols=221 Identities=18% Similarity=0.206 Sum_probs=114.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHcCCCchhhhhhhcCCC---ch-hHHHHH---------HHHHHHHHcCC----CcccC
Q 002269 573 YLKHIFLLLTGRQLDSSVELAASRGDVRLACLLSQAGGS---TV-SRSDIA---------HQLDLWRVNGL----DFKFI 635 (944)
Q Consensus 573 ~le~if~lL~g~~I~eAc~~Ai~sgd~rLAtLlsq~gs~---~~-~r~~l~---------~QL~~W~~~~~----d~~~I 635 (944)
-++.||.+|-+|++++|+++|...|++=.|..|. |+. ++ +-..+. ..-..||..-- + .-+
T Consensus 180 l~~~i~~liR~G~~~eA~~lc~~~gq~WRAasL~--G~~~~~dP~~~~~~~~e~~~~~Gn~~r~LWkr~c~~lA~~-~~~ 256 (460)
T 3iko_C 180 FFKYIYELILAGAIDEALEEAKLSDNISICMILC--GIQEYLNPVIDTQIANEFNTQQGIKKHSLWRRTVYSLSQQ-AGL 256 (460)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHH--TTSBCBCTTTSGGGTTTCSSCBSBTTHHHHHHHHHHHHHC-SSS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCHHHHHHHc--ccccccCcccccccccccccccCchhHHHHHHHHHHHHhC-CCC
Confidence 3677999999999999999999999999999884 542 11 000000 12234653210 1 134
Q ss_pred hHHHHHHHHHhhCCcccccCC-CCCCHHHHHHHHhhccCCCCCCHHHHHHHHHHHhcCC---CCCCCCCccccCCCCCC-
Q 002269 636 EKDRIRLYELLAGHIHSSLND-VTIDWKRFLGLLMWYQLPPETSLAIVFQTYQHLLDDG---KAPLPVPIYVDEGPIDE- 710 (944)
Q Consensus 636 ~~~r~kIY~LLAG~~~~~~~~-~~LdW~ralgL~LWYg~~~~~si~~av~~y~~~~~~~---~~~~P~P~y~~~~~~~~- 710 (944)
++.=++||.+|||++...... .. +|--.|=+|+ .. =+..-|+.|-...... ....|+|.. ..+.+.
T Consensus 257 ~~yERAvY~~LsG~l~s~~~~~~~-sWeD~Lway~--n~----ll~~~vd~~l~~~~~~~~~~~~~~~P~~--~~tl~~i 327 (460)
T 3iko_C 257 DPYERAIYSYLSGAIPNQEVLQYS-DWESDLHIHL--NQ----ILQTEIENYLLENNQVGTDELILPLPSH--ALTVQEV 327 (460)
T ss_dssp CHHHHHHHHHHHTSCCCHHHHTTC-CHHHHHHHHH--HH----HHHHHHHHHHHHTTCSCGGGCCSCCCCC--CCCHHHH
T ss_pred CHHHHHHHHHHhCCchhhcccCCC-CHHHHHHHHH--HH----HHHHHHHHHHHHhCCccccccccCCCCC--ccCHHHH
Confidence 455559999999998765421 23 8998765543 21 1222333333221100 011233331 000000
Q ss_pred ---CCCCCCCCCCChhHHHHHhcccCCCccc---chhhhhcccCC--------CCCCCCcchhHHHHHHHHhcCC--CCC
Q 002269 711 ---PIDWSGNERNDLSYYLMLLHASGESKFG---SLKTMFNALSS--------TYDPLDYHMIWHQREVLAAVGV--ISS 774 (944)
Q Consensus 711 ---~~~~~~~~~~D~~y~LLkL~~~~~~~~~---~l~~~l~p~~~--------s~~~lD~rLsW~l~~vL~a~g~--~~~ 774 (944)
+....+....+ -|+.++.+.-...... .+...|.+... ..+|-=.|+.=||+.+|+.+|. +..
T Consensus 328 l~~L~~~~~~ea~~-p~r~iQ~~iIl~~~~~ll~~~~~~L~~~~~~~~~~~~~~~~~~~LRf~aHl~Lflr~l~~~~~~~ 406 (460)
T 3iko_C 328 LNRVASRHPSESEH-PIRVLMASVILDSLPSVIHSSVEMLLDVVKGTEASNDIIDKPYLLRIVTHLAICLDIINPGSVEE 406 (460)
T ss_dssp HHHHHHHSHHHHHS-TTHHHHHHHHSSCCHHHHHHHHHTCCC----------CTTSHHHHHHHHHHHHHHHHHSTTSSCH
T ss_pred HHHHHhcChHhhhC-hHHHHHHHHHHcCHHHHHHHHHHHHHHhhccCccccccccCcchHHHHHHHHHHHHHhCccccCh
Confidence 00000000000 1222222111000000 11112222100 0112223777888888998886 233
Q ss_pred chhhHHHHHHHHHHHhCCCchhHHHHHhcccC
Q 002269 775 NDLQILDMGLVSQLLCQGKCHWAIYVVLHMPR 806 (944)
Q Consensus 775 ~~~~~Lt~~fA~QLe~~glw~wAifVllhl~d 806 (944)
...+.+-..|...|...|+.+.-.|-..+|+.
T Consensus 407 ~~~~~II~~YI~~L~~~~~~eLIplY~S~L~~ 438 (460)
T 3iko_C 407 VDKSKLITTYISLLKLQGLYENIPIYATFLNE 438 (460)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHHCCCcccHHHHHccCCH
Confidence 34567788999999999999998888888864
No 13
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=46.74 E-value=16 Score=43.73 Aligned_cols=278 Identities=12% Similarity=0.123 Sum_probs=129.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHcCCC------chhhhhhhcC-C-CchhHHHHHHHH-HHHHHc-CCCcccChHHHHHH
Q 002269 573 YLKHIFLLLTGRQLDSSVELAASRGDV------RLACLLSQAG-G-STVSRSDIAHQL-DLWRVN-GLDFKFIEKDRIRL 642 (944)
Q Consensus 573 ~le~if~lL~g~~I~eAc~~Ai~sgd~------rLAtLlsq~g-s-~~~~r~~l~~QL-~~W~~~-~~d~~~I~~~r~kI 642 (944)
.=..||.+|-+|++++|.+.|.++++. ..++++.-.- + +......++.+| ..|++. +.. .-+||.+..+
T Consensus 155 ~Wa~IyY~LR~G~~~~A~e~~~~~~~~~~~~d~~F~~~l~~~~~s~~~~L~~~~~~~l~~ey~~~~r~~-~~~DpyK~Av 233 (661)
T 2qx5_A 155 IWALIFYLLRAGLIKEALQVLVENKANIKKVEQSFLTYFKAYASSKDHGLPVEYSTKLHTEYNQHIKSS-LDGDPYRLAV 233 (661)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHTGGGC-----CHHHHHHHC-------------------------------CHHHHHH
T ss_pred cHHHHHHHHhcCCHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhCC-CCCCHHHHHH
Confidence 355699999999999999999999864 4555554443 2 223345666666 346652 111 1279999999
Q ss_pred HHHhhCCcc-c----ccC-CCCCCHHHHHHHHhhccCCCCCCHHH-----HHHHHHHHhcC-CCCCCCCCccccCCCCCC
Q 002269 643 YELLAGHIH-S----SLN-DVTIDWKRFLGLLMWYQLPPETSLAI-----VFQTYQHLLDD-GKAPLPVPIYVDEGPIDE 710 (944)
Q Consensus 643 Y~LLAG~~~-~----~~~-~~~LdW~ralgL~LWYg~~~~~si~~-----av~~y~~~~~~-~~~~~P~P~y~~~~~~~~ 710 (944)
|++|+|.=. . .+. ..+ ||+ =++|--....+.+-+. .+..++..+.+ |
T Consensus 234 Y~Iig~cD~~~~~~~~v~~siE-D~L---Wl~L~lvre~~~~~~~~~e~ytL~~LQ~~I~~yG----------------- 292 (661)
T 2qx5_A 234 YKLIGRCDLSRKNIPAVTLSIE-DWL---WMHLMLIKEKDAENDPVYERYSLEDFQNIIISYG----------------- 292 (661)
T ss_dssp HHHHHTCCGGGCCCGGGCCSHH-HHH---HHHHHTCCC----------CCCHHHHHHHHHHHC-----------------
T ss_pred HHHHhcccccccchHHHhccHH-HHH---HHHHHhccCCCcccccccccccHHHHHHHHHHhh-----------------
Confidence 999988721 1 111 111 453 1112111111110000 13333333321 1
Q ss_pred CCCCCCCCCCC-hhHHHHHhcccCCCcccchhhhhcccCCCCCCCCcchhHHHHHHHHhcCCCCCc-------------h
Q 002269 711 PIDWSGNERND-LSYYLMLLHASGESKFGSLKTMFNALSSTYDPLDYHMIWHQREVLAAVGVISSN-------------D 776 (944)
Q Consensus 711 ~~~~~~~~~~D-~~y~LLkL~~~~~~~~~~l~~~l~p~~~s~~~lD~rLsW~l~~vL~a~g~~~~~-------------~ 776 (944)
....+ +-|++|- .+. .++..+.-.... ++ --.=|+...|...|.+... +
T Consensus 293 ------e~~F~~lYf~vLl-Ltg------qFE~AI~~L~~~-~~---vdAVH~AIaL~~~gLL~~~~~lls~~~~~~~lN 355 (661)
T 2qx5_A 293 ------PSRFSNYYLQTLL-LSG------LYGLAIDYTYTF-SE---MDAVHLAIGLASLKLFKIDSSTRLTKKPKRDIR 355 (661)
T ss_dssp ------GGGGTTCHHHHHH-HTT------CHHHHHHHHHTT-CH---HHHHHHHHHHHHTTC-----------------C
T ss_pred ------hhhhhhHHHHHHH-HHh------hHHHHHHHHHhc-Cc---hhHHHHHHHHHHcCCccCCCcccccCCCccccc
Confidence 00111 3334433 332 133322211111 22 2256777777766654420 1
Q ss_pred hhHHHHHHHHHHHhCCCchhHHHHHhcccCCCCChH---HHHHHHHHHHHhhcc------cCCChh-HHHHHHHH----h
Q 002269 777 LQILDMGLVSQLLCQGKCHWAIYVVLHMPRCDDYPY---LQATLIREILFQYCE------SWSSEE-SQRKFIEA----L 842 (944)
Q Consensus 777 ~~~Lt~~fA~QLe~~glw~wAifVllhl~d~~~~~~---~R~~avr~lL~r~~~------~~~~~~-~~~~fL~~----L 842 (944)
...|-..|+...+. +--..|+.-+.+|...+. +. .=..+|++++-..-. .+..+. ....++++ +
T Consensus 356 ~arLI~~Yt~~F~~-td~~~Al~Y~~li~l~~g-~~~~~~~~~~l~eLvletr~f~~LLG~i~~dG~r~~G~i~~~~~li 433 (661)
T 2qx5_A 356 FANILANYTKSFRY-SDPRVAVEYLVLITLNEG-PTDVELCHEALRELVLETKEFTVLLGKIGRDGARIPGVIEERQPLL 433 (661)
T ss_dssp HHHHHHHHHTTTTT-TCHHHHHHHHHGGGGSCC-HHHHHHHHHHHHHHHHHHCCHHHHHCEECTTSCEECCHHHHTCGGG
T ss_pred HHHHHHHHHHHhhc-CCHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHHhcccHHHHcCCcCCCCCcCcchHHHhhccc
Confidence 23455566666643 457778865555533321 11 112445555542211 011110 01224443 2
Q ss_pred CCC-----HHHHHHHHHHHHHhcCCHHHHHHHHHHcccHHHHHHHHHHhhhccc
Q 002269 843 GVP-----SEWLHEAMAVYYNYYGELSKALEHFLECANWQKAHSIFVTSVAHTL 891 (944)
Q Consensus 843 ~IP-----~~WI~eAkAl~a~~~~d~~~e~~~Ll~A~~~~eAH~v~i~~vaP~a 891 (944)
++. -.=|-+--|..+..+|.+..++..+.-||+|+.|-+++.+.|+.-.
T Consensus 434 ~l~d~~~~~~~i~~~aA~~ae~~G~~~dAi~LY~La~~~d~vl~lln~~Ls~~l 487 (661)
T 2qx5_A 434 HVRDEKEFLHTITEQAARRADEDGRIYDSILLYQLAEEYDIVITLVNSLLSDTL 487 (661)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHh
Confidence 222 2224455577888999999999999999999999999998888544
No 14
>2ffg_A YKUJ; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, unknown function; 2.31A {Bacillus subtilis} SCOP: d.317.1.1
Probab=35.93 E-value=31 Score=30.01 Aligned_cols=33 Identities=9% Similarity=0.141 Sum_probs=24.1
Q ss_pred hHHHHHHHHHHhhhc---CC----E---------EEEEeCCCcEEEEEE
Q 002269 149 SDDFVKKMKERTERQ---GA----R---------FVSFDPVSGEWKFLV 181 (944)
Q Consensus 149 ~~~~~~~l~~~~~~~---~~----~---------f~~y~~~tg~w~f~V 181 (944)
+...++||+.+.+.. |- . -|.||+.||+|++++
T Consensus 4 L~~II~RL~AM~~d~~~~~e~q~R~FE~~G~~~c~V~y~~~t~~F~L~~ 52 (87)
T 2ffg_A 4 LMGIITRLQSLQETAEAANEPMQRYFEVNGEKICSVKYFEKNQTFELTV 52 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCEEEEEEETTEEEEEEEEETTTTEEEEEE
T ss_pred HHHHHHHHHHHHhccccCCccceeeeccCCEEEEEEEEecCCCeEEEEE
Confidence 456789998886442 22 2 489999999998863
No 15
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=23.34 E-value=3.4e+02 Score=35.69 Aligned_cols=87 Identities=10% Similarity=0.157 Sum_probs=59.8
Q ss_pred HHHHHHHHhCCCchhHHHHHhcccCCCCChHHHHHHHHHHHHhhcccCCChhHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Q 002269 782 MGLVSQLLCQGKCHWAIYVVLHMPRCDDYPYLQATLIREILFQYCESWSSEESQRKFIEALGVPSEWLHEAMAVYYNYYG 861 (944)
Q Consensus 782 ~~fA~QLe~~glw~wAifVllhl~d~~~~~~~R~~avr~lL~r~~~~~~~~~~~~~fL~~L~IP~~WI~eAkAl~a~~~~ 861 (944)
-.-|.-++..|++.+|.-++-.... ...++..++. ++..+ +.-..|.+++.-|..|..-|||.. ..|
T Consensus 1053 ~eIA~Iai~lglyEEAf~IYkKa~~-------~~~A~~VLie-~i~nl---drAiE~Aervn~p~vWsqLAKAql--~~G 1119 (1630)
T 1xi4_A 1053 PDIANIAISNELFEEAFAIFRKFDV-------NTSAVQVLIE-HIGNL---DRAYEFAERCNEPAVWSQLAKAQL--QKG 1119 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCC-------HHHHHHHHHH-HHhhH---HHHHHHHHhcCCHHHHHHHHHHHH--hCC
Confidence 3457778899999999998887642 2345444443 33322 112457778899999999999887 457
Q ss_pred CHHHHHHHHHHcccHHHHHH
Q 002269 862 ELSKALEHFLECANWQKAHS 881 (944)
Q Consensus 862 d~~~e~~~Ll~A~~~~eAH~ 881 (944)
++.+++.++++|++++.-.+
T Consensus 1120 ~~kEAIdsYiKAdD~say~e 1139 (1630)
T 1xi4_A 1120 MVKEAIDSYIKADDPSSYME 1139 (1630)
T ss_pred CHHHHHHHHHhcCChHHHHH
Confidence 78888888888776655433
Done!