Query 002271
Match_columns 944
No_of_seqs 546 out of 2593
Neff 6.7
Searched_HMMs 46136
Date Thu Mar 28 20:21:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002271.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002271hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2039 Transcriptional coacti 100.0 3.5E-86 7.6E-91 806.9 41.4 789 1-933 69-875 (875)
2 smart00318 SNc Staphylococcal 99.9 1.9E-24 4.1E-29 212.6 18.8 138 110-288 1-138 (138)
3 cd00175 SNc Staphylococcal nuc 99.9 2.1E-23 4.5E-28 202.8 16.1 129 118-288 1-129 (129)
4 KOG2039 Transcriptional coacti 99.9 3.7E-22 8E-27 245.4 20.4 516 302-920 3-625 (875)
5 PRK06518 hypothetical protein; 99.9 1.1E-20 2.4E-25 191.9 16.7 137 107-289 19-157 (177)
6 smart00318 SNc Staphylococcal 99.9 2.6E-20 5.7E-25 183.2 18.4 134 303-509 2-137 (138)
7 PF00567 TUDOR: Tudor domain; 99.8 2.3E-20 5.1E-25 177.3 12.8 119 684-809 2-121 (121)
8 cd00175 SNc Staphylococcal nuc 99.8 2.3E-19 5E-24 174.4 15.9 126 310-509 1-128 (129)
9 PF00565 SNase: Staphylococcal 99.8 1.5E-18 3.3E-23 162.9 9.7 106 137-288 1-108 (108)
10 PRK06518 hypothetical protein; 99.8 1.2E-17 2.7E-22 169.6 16.2 136 301-511 21-157 (177)
11 COG1525 Micrococcal nuclease ( 99.7 2.3E-17 4.9E-22 171.7 13.9 129 112-289 42-172 (192)
12 COG1525 Micrococcal nuclease ( 99.6 1.9E-15 4.2E-20 157.2 14.1 130 304-511 42-172 (192)
13 PF00565 SNase: Staphylococcal 99.6 5.9E-15 1.3E-19 138.5 11.2 100 567-667 1-108 (108)
14 smart00333 TUDOR Tudor domain. 99.3 4.6E-12 9.9E-17 105.4 6.6 56 733-795 2-57 (57)
15 cd04508 TUDOR Tudor domains ar 99.3 5E-12 1.1E-16 101.4 5.7 48 737-790 1-48 (48)
16 KOG2279 Kinase anchor protein 99.0 2.8E-10 6E-15 129.0 5.5 189 682-888 401-600 (608)
17 smart00743 Agenet Tudor-like d 98.5 2.4E-07 5.2E-12 78.3 6.5 56 733-794 2-59 (61)
18 PF06003 SMN: Survival motor n 98.1 3.7E-06 8E-11 91.7 6.2 59 731-794 66-124 (264)
19 PF09465 LBR_tudor: Lamin-B re 96.4 0.013 2.8E-07 48.1 7.1 52 732-789 4-55 (55)
20 KOG2279 Kinase anchor protein 96.3 0.0011 2.5E-08 76.4 0.3 186 683-888 313-502 (608)
21 PF05641 Agenet: Agenet domain 95.0 0.047 1E-06 47.3 5.5 54 735-794 2-66 (68)
22 PF11717 Tudor-knot: RNA bindi 92.9 0.25 5.5E-06 40.9 5.6 51 735-789 2-54 (55)
23 KOG4327 mRNA splicing protein 91.6 0.11 2.4E-06 53.2 2.3 55 731-790 65-119 (218)
24 PF15057 DUF4537: Domain of un 91.3 0.46 1E-05 46.2 6.1 105 684-795 11-116 (124)
25 PF15057 DUF4537: Domain of un 90.2 0.85 1.8E-05 44.4 6.9 65 737-809 1-65 (124)
26 KOG3026 Splicing factor SPF30 89.2 0.48 1E-05 50.0 4.5 56 733-793 90-145 (262)
27 KOG3038 Histone acetyltransfer 85.5 2.8 6.1E-05 45.1 7.7 149 620-777 64-238 (264)
28 PF07039 DUF1325: SGF29 tudor- 78.7 2.2 4.7E-05 41.9 3.7 88 684-781 16-115 (130)
29 cd05162 PWWP The PWWP domain, 55.6 22 0.00049 32.0 5.0 62 735-797 2-67 (87)
30 PLN00104 MYST -like histone ac 49.0 28 0.00062 41.0 5.6 58 732-789 52-112 (450)
31 smart00293 PWWP domain with co 48.0 40 0.00086 28.6 5.0 56 735-791 2-62 (63)
32 cd05834 HDGF_related The PWWP 46.0 33 0.00072 31.0 4.4 60 733-795 2-61 (83)
33 cd05841 BS69_related The PWWP 42.6 43 0.00093 30.4 4.5 55 733-795 6-61 (83)
34 PF09038 53-BP1_Tudor: Tumour 40.6 72 0.0016 30.9 5.9 48 736-790 5-52 (122)
35 PF07039 DUF1325: SGF29 tudor- 34.5 1.2E+02 0.0025 30.0 6.6 54 735-793 1-60 (130)
36 PF11302 DUF3104: Protein of u 32.9 1.4E+02 0.003 26.6 6.0 59 733-791 5-70 (75)
37 KOG3038 Histone acetyltransfer 32.6 1.2E+02 0.0026 33.1 6.7 57 731-793 125-186 (264)
38 PF02736 Myosin_N: Myosin N-te 27.9 1.8E+02 0.0039 22.6 5.4 39 739-786 3-41 (42)
39 PF11730 DUF3297: Protein of u 27.3 20 0.00043 31.0 -0.1 29 16-44 19-49 (71)
40 PRK07899 rpsA 30S ribosomal pr 26.8 1.2E+03 0.026 28.2 15.2 132 682-849 80-223 (486)
41 cd06080 MUM1_like Mutated mela 25.3 1.6E+02 0.0034 26.6 5.2 55 735-795 2-57 (80)
42 PF00855 PWWP: PWWP domain; I 24.3 1.7E+02 0.0037 25.8 5.4 58 735-793 2-60 (86)
43 COG1093 SUI2 Translation initi 24.2 4.5E+02 0.0098 29.0 9.3 67 732-848 7-74 (269)
44 PF08169 RBB1NT: RBB1NT (NUC16 22.1 2.1E+02 0.0045 26.8 5.4 58 736-794 8-68 (96)
45 PRK12442 translation initiatio 20.8 2E+02 0.0044 26.4 5.0 31 111-142 8-38 (87)
46 cd04508 TUDOR Tudor domains ar 20.3 1.3E+02 0.0027 23.5 3.3 36 301-341 12-47 (48)
No 1
>KOG2039 consensus Transcriptional coactivator p100 [Transcription]
Probab=100.00 E-value=3.5e-86 Score=806.87 Aligned_cols=789 Identities=43% Similarity=0.698 Sum_probs=683.9
Q ss_pred CceEEEEEEEeecCCCceEEEEEeCCccHHHHHHhccceeeeeccCCCCCCchHHHHHHHHHHHHHHhCCCcccCCCccc
Q 002271 1 MQEVTFRVDYAVPNIGREFGTVILGDKNVAMLVVSEGWAKVKEQGSQKGEASPFLAELLRLEEQAKLQGLGRWSKVPGAA 80 (944)
Q Consensus 1 ~k~V~f~v~y~~~~~~r~~g~v~~~~~nv~~~lv~~G~akv~~~~~~~~~~~~~~~~L~~~e~~Ak~~~~G~w~~~~~~~ 80 (944)
+|+|.|+.+|..+..+|+||.|+++++|+++.|+.+||+++++.+. ..++|...|...|.+|++.++|+|++.
T Consensus 69 ~k~~~v~~~~~~~~~~~e~~~~~~~~~~~a~~lv~~g~~~~~~~~~---~~~~~~~~l~~~~~~~k~~~~g~w~~~---- 141 (875)
T KOG2039|consen 69 GKEVAVTRDQMSANNGREVGFIYLGDENSAESLVKEGLLDVRDEGV---RNSSYFKTLDEVEVQAKQSGRGIWSKL---- 141 (875)
T ss_pred cceeeeEEeeeccccccccceeecCcchhHHHHHhccCCccccccc---ccchhhhhhhhhhhhhhhhcccccccc----
Confidence 6899999999444458999999999999999999999999988762 227899999999999999999999933
Q ss_pred ccccccCCCCcCCCCCccchHHHHhhhcCCceeEEEEEEecCC-EEEEEEcCCceEEEEEEeeecCCCCCCCCCccccCc
Q 002271 81 EASIRNLPPSAIGDSSNFNAMALLDANKGRPMQGIVEQARDGS-TLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTD 159 (944)
Q Consensus 81 ~~~~r~~~~~~~~~~~~~~~~~~~~~~k~~~~~a~Ve~V~DGd-t~~v~l~~~~~~~~v~laGI~~Pe~~~~~~~~~~~~ 159 (944)
....|++.|+. .++..|+..+.++++.|+|++|++|+ +.||.+.|.++.++++|+|+.||.+..+.
T Consensus 142 ~~~~~~~~~~~------~~p~~~~~~~~~~~~~~~ve~v~~~~~~~rv~~~p~~~~~~v~lSg~~~P~~~~~s------- 208 (875)
T KOG2039|consen 142 DHFIRNLKDSA------LNPAELVDAVGGKPVNAIVEHVRDGEDTVRVLLRPELKYVTVRLSGKRCPSQGPPS------- 208 (875)
T ss_pred ccceeeccccc------cccHHHHHhcCCceeeeehhhccChhhhhhHHhccccceeEEecccccCCCCCCCC-------
Confidence 34578998874 57899999999999999999999999 68888888888999999999999987532
Q ss_pred ccccCCCccccccccchhhHHHhhhhcccCCCCCCCchhHHHHHHHHHHHhcCCeEEEEEeeccCCCcEEEEEEecCCCC
Q 002271 160 TEETNGDVSAAEAVAPLNSAQRLAASTASAGQQSTDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGET 239 (944)
Q Consensus 160 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~eAk~f~e~~ll~r~V~v~~~~~D~~g~~~~~V~~~~g~~ 239 (944)
+|. ....+||+.+|+.|++.++++|.|.|.+++...+..++|+|.+++|+
T Consensus 209 ----~~~-------------------------~~~~~~~~~~a~~f~~~~~~~r~~~i~~~~~~~~~~~~g~v~~~~~~- 258 (875)
T KOG2039|consen 209 ----DGS-------------------------PSVPDPFADEAKLFSEDRLLQRAVAIPLESEENYVFFVGDVLYPDGN- 258 (875)
T ss_pred ----CCC-------------------------CCCCCcHHHHHHHhcccchhhhceeeeeccccccccccccccccccc-
Confidence 120 12358999999999999999999999999998887889999999995
Q ss_pred HHHHHHHHHHcCcEEEeecccccchHHHHHHHHHHHHHHHHhcccc-ccccCCCCCCccccccceeEEEEEEEEeCCEEE
Q 002271 240 AKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRM-WTNYVPPQSNSKAIHDQNFTGKVVEVVSGDCII 318 (944)
Q Consensus 240 ~~di~~~Ll~~GlA~~~~~~~~~~~~~~~~~l~~aE~~Ak~~r~gl-W~~~~~~~~~~~~~~~~~~~~~V~~V~~gD~i~ 318 (944)
|++.|+.+|++++++|+...+..++...++.+|..++..+.++ |++|.++.++++.+..+.|+++|++++.+||+.
T Consensus 259 ---i~~~~~~~~~~k~v~~s~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~q~~~s~~~~~~~~~~~~~v~e~~~~d~~~ 335 (875)
T KOG2039|consen 259 ---IALELLSEGLAKCVDWSKNEIPCGAAKKLRAAERLAKEHRLRVLWKNYQVPLSTSESIDDKGFSGKVVEVLVSDCVL 335 (875)
T ss_pred ---eeeehhccchHHHHHhhhhccCchhhhhhhHHhhccchhHHHHHHhccccccchheeeccccccceeeeeeccCceE
Confidence 9999999999999999999998888878999999999999999 999999999888878889999999999999999
Q ss_pred EecCCCCCCCCCcceEEEEeeccCCCCCCCCCCCC--CchhHHHHHHHHHhhcCCcEEEEEEEEEeecccccccccccCC
Q 002271 319 VADDSIPYGNALAERRVNLSSIRCPKIGNPRKDEK--PAAYAREAREFLRTRLIGRQVNVQMEYSRKVVVEAAPVAAGAK 396 (944)
Q Consensus 319 v~~~~~~~~~~~~~~~v~L~~i~~P~~~~~~~~~~--~~~~~~ea~e~Lr~~~~Gk~v~v~~~y~~~~~~~~~~~~~~~~ 396 (944)
+..++ |+ +.++.+++|+.|+.+.+.+..+ ..||+.+|++|||++++|++|.+.++|.|+..
T Consensus 336 ~~~~s---g~---~~~~~~~~i~~pr~~~~~~~~~p~~~~~q~~a~~~~~~~~i~~~v~~~~~~~~~~~----------- 398 (875)
T KOG2039|consen 336 VALDS---GS---ENKLFLSSIRLPRAGEPGRSLKPYISPVQLVAREFLRKKLIGKRVILQMDVIRPRR----------- 398 (875)
T ss_pred EecCC---CC---ceEEEeeeccCccccccccccCCccccHHHHhhhhhhhhccCceeeEeeecccccc-----------
Confidence 99976 33 7899999999999444333333 48999999999999999999999999987631
Q ss_pred CCCCCCCCCCCcCccccCCCCCCcccCccccceeeEEEEEecCCCCCCCCCchhhhhcccCCCCCCccHHHHHHhcCcEE
Q 002271 397 GPAGTKGPAGTKGQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPAGVNVAELVVSRGLGN 476 (944)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~lv~~G~a~ 476 (944)
+. +++ ..+.+.+ ..|.|+++.++.+|++.
T Consensus 399 -----~~---------------------~~~---~~c~~~~----------------------~~~~~~a~~~~~kg~~~ 427 (875)
T KOG2039|consen 399 -----EN---------------------VPT---KVCALPL----------------------GGGKNVAELLVKKGLAT 427 (875)
T ss_pred -----cc---------------------ccc---ccccccC----------------------CCcceeeEEEecccchh
Confidence 00 000 1111111 24799999999999999
Q ss_pred EEEec-CccccchhHHHHHHHHHHHHHcCCCCCCCCCCCcceeeeCCccccccccccchhhhcCCcccEEEEEEecCCEE
Q 002271 477 VINHR-DFEERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKARDFLPFLQRSRRIPAVVEYVLSGHRF 555 (944)
Q Consensus 477 v~~~~-~~~~~s~~~~~l~~ae~~A~~~~~G~~~~~~~~~~~i~d~~~~~~~~ak~fl~~l~~~~~~~~vVe~V~~G~~~ 555 (944)
+.+|| ++.+++.+||.|+.+|..|.+.++|+|+.+..+.+++.+++..-..+++.|++++++...++.+|+++++|+++
T Consensus 428 ~v~~~~~~~~~s~~~d~ll~~E~~~~~~~~~~~s~~~~~~~~~~~~~~~i~~n~~~~~~~~~~~~~~~~~v~~~~~gs~~ 507 (875)
T KOG2039|consen 428 VVRKRQDDEQRSSHYDLLLVAEAIAIKGKKGCHSKKLDPTLRITDLTVDIVRNKVQFLPSLDRGNRVEAIVEAVISGSRL 507 (875)
T ss_pred hhhhHhhhhhhcchhhhhhcchHHHHhhhhhhcccCCCcceeechhhhhhhcCcEEeehhhccccceeeeeeeeeccccc
Confidence 99999 67889999999999999999999999999887677788887533444559999999999999999999999999
Q ss_pred EEeecCCceeEEEEEeccCCCC-------CCCcchHHHHHHHHHHhcCceEEEEEEEECCCCcEEEEEEeC-CccHHHHH
Q 002271 556 KVLIPKETCSIAFSFSGVRCPG-------RNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWES-RTNVAVIL 627 (944)
Q Consensus 556 kv~ip~e~~~I~~~LaGI~~P~-------~~e~w~~EA~~f~k~~llqR~V~v~v~~~Dk~G~~ig~L~~~-~~nIa~~L 627 (944)
++++|++.+.++|.++|++||+ .+++|+++|..|++.+++++++++++..+++.|+|+|.++.+ +.+++..+
T Consensus 508 ~~~~pk~~~~~~~~~~g~~~~~~~r~~~~~~e~~~~~~~~~~~~~vl~~~~~l~v~~~~~~~~~l~~~~~~~~~~~s~~~ 587 (875)
T KOG2039|consen 508 RLYIPKETCYCQFALAGIDCPSGARNDVQEGEPFSEEAIEFTRSLVLQREVELEVEITDKNGNFLGSLYEDSKTNLSLKL 587 (875)
T ss_pred eeccCCcceeEEEeeccccCcccccccccccCCccHHHHHHhhhheeccceEEEEeeeccCccccccccccccccchhhh
Confidence 9999999999999999999997 589999999999999999999999999999999999999987 89999999
Q ss_pred HHcCCEEEeeccCCCCCCchHHHHHHHHHHH-hhcccccccccccccccC--CccccCCCCcEEEEEEEEEecCCeEEEE
Q 002271 628 LEAGLAKLQTSFGSDRIPDSHLLEQAEKSAK-SQKLKIWENYVEGEEVSN--GAAVEGKQKEVLKVVVTEILGGGKFYVQ 704 (944)
Q Consensus 628 v~~GLA~v~~~~s~~~~~~~~~L~~AE~~AK-~~k~giW~~~~~~~~~~~--~~~~~~~~~~~~~V~VT~V~sp~~FyVQ 704 (944)
+++||+..+ |..+.+.....|..++..|+ ..+.++|.++.++..... ...+......+..++++.+..++.||+|
T Consensus 588 ~e~~L~~~~--~~~e~~~~~~~~~s~~~~ak~~~k~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~i~p~~~F~~q 665 (875)
T KOG2039|consen 588 LEQGLAPEH--FAAERSSEYPPLESAELPAKLEQKLKIWLNYVEPVVEEVVLCLEKDERDLNTLKVVVTEITPGKGFYVQ 665 (875)
T ss_pred hhhhcCccc--hhhhhhhhccchhhhhhccccchhcceeecccccchhhheecccccccccccceeeEeeecCCCcceee
Confidence 999999997 77666666777888999999 999999999877633211 1111123456778888888877999999
Q ss_pred EcCc-hhHHHHHHHHHHHHhcCCCCCCCCCCccCCeEEEEEcCCCceEEEEEEeeccCccccCCCEEEEEEeecCCeeee
Q 002271 705 QVGD-QKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELV 783 (944)
Q Consensus 705 ~~~~-~~Le~L~~~L~~~~~~~~p~~~~~~p~~G~lcaA~fs~D~~WYRA~I~~v~~~~~~~~~~~v~V~fVDYGn~e~V 783 (944)
..+. ..+++||..|+.......|..+++.|+.|++|+|+|+.|++||||.|+++. ....++||||||||.+++
T Consensus 666 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~p~~gd~c~A~y~~D~qwyRa~i~~V~------~~~~~~V~yiDygn~E~l 739 (875)
T KOG2039|consen 666 SISDGSKITKIMTNLSQLVELKPPSSGSYTPKRGDLCVAKYSLDGQWYRALIVEVL------DPESMEVFYIDYGNIETL 739 (875)
T ss_pred cccchHHHHHHHHHHHHHhhhcccccCCCCCCCCCeeeeeeccccceeeeeeeeec------cCcceeEEEEecCccccc
Confidence 9984 789999999999888777777889999999999999999999999999984 228999999999999999
Q ss_pred cCCCcccCCccccCcccccceeeecceecCCCCCCCcHHHHHHHhhccccCCCEEEEEEEEEeCCCCcccCCCCccEEEE
Q 002271 784 PYNKLRPIDPSLSSTPPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSNEFRALVEERDSSGGKLKGQGTGTLLHV 863 (944)
Q Consensus 784 ~~s~Lr~Lp~~f~~lP~qAi~c~LagV~p~~~~~~ws~eA~~~f~~lllv~gk~l~a~V~~~~~~g~~~~~~~~~~~~~V 863 (944)
|+.+|++||+.|..+|++|.+|+|++|+++. ..+..++++.+|.+ ...++.+++.+.... .++.+++
T Consensus 740 p~~~l~~lp~~~~~~p~~a~~~~L~~ik~~~-~~~~~e~~i~~l~~--~~~~~~~~~~~~~~i----------~~~~~~~ 806 (875)
T KOG2039|consen 740 PFVRLKPLPPHFSLLPPVAQECGLAGIKEPQ-LEDLKEEAIRYLDE--DTLGHKCQVNVELRV----------VGNSLLV 806 (875)
T ss_pred ccccccCCChHHhcCchHHhhhhhhcccCCc-ccchHHHHHHHHHH--Hhhcccceeeeeeee----------eccceeE
Confidence 9999999999999999999999999999985 57889999999999 677887777744332 1456889
Q ss_pred EEEecCCCCcHHHHHHH-cCCeeEecccccCchhhHHHHHHHHHHHHHHHhhcccccccCCCCCCCCCCCc
Q 002271 864 TLVAVDAEISINTLMVQ-EGLARVERRKRWGSRDRQAALENLEKFQEEAKTARIGMWQYGDIQSDDEDPLP 933 (944)
Q Consensus 864 tL~d~~~~~sIn~~LV~-~GlA~~~~~~~~~~~~~~~~~~~l~~aqe~Ak~~r~giW~yGD~~~dde~~~~ 933 (944)
+|+...+..++++.|+. .|+.....++. .+.++...+.|..+|+.|++.|+++|.|||++.+|+++++
T Consensus 807 ~l~~~~~~~d~~~~l~~~~~l~~~~~~~~--~~~~q~~~~~~~~~qq~a~~~~~~~~~y~~~~~~~~~~~~ 875 (875)
T KOG2039|consen 807 TLLYTVEELDVGEELVAVEGLSLVEQRKT--EEVLQALLDQLEKAQQEARKEHLNIWFYGDVTGKDADEVV 875 (875)
T ss_pred EEeeecCcCChhHhhhhhccccccccccc--chHHHHHhhHhhhchhhHHhhhhhhhhhcCcccCcccccC
Confidence 99887789999999999 99999887763 2678999999999999999999999999999999999873
No 2
>smart00318 SNc Staphylococcal nuclease homologues.
Probab=99.92 E-value=1.9e-24 Score=212.63 Aligned_cols=138 Identities=32% Similarity=0.569 Sum_probs=116.6
Q ss_pred CceeEEEEEEecCCEEEEEEcCCceEEEEEEeeecCCCCCCCCCccccCcccccCCCccccccccchhhHHHhhhhcccC
Q 002271 110 RPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAASTASA 189 (944)
Q Consensus 110 ~~~~a~Ve~V~DGdt~~v~l~~~~~~~~v~laGI~~Pe~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 189 (944)
++++|+|++|+|||||+|.+. .++.++|||+||||||+.+....
T Consensus 1 ~~~~~~V~~V~DGDT~~v~~~-~~~~~~vrL~gIdaPe~~~~~~~----------------------------------- 44 (138)
T smart00318 1 KEIRGVVERVLDGDTIRVRLP-KNKLITIRLSGIDAPETARPNKG----------------------------------- 44 (138)
T ss_pred CceeEEEEEEecCCEEEEEeC-CCCEEEEEEEeccCCccCCCCCC-----------------------------------
Confidence 367899999999999999864 34678999999999999753200
Q ss_pred CCCCCCchhHHHHHHHHHHHhcCCeEEEEEeeccCCCcEEEEEEecCCCCHHHHHHHHHHcCcEEEeecccccchHHHHH
Q 002271 190 GQQSTDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKR 269 (944)
Q Consensus 190 ~~~~~~~p~g~eAk~f~e~~ll~r~V~v~~~~~D~~g~~~~~V~~~~g~~~~di~~~Ll~~GlA~~~~~~~~~~~~~~~~ 269 (944)
...+.+|||.+|+.|++.+|++++|.|.+.+.|+|||++|+|++.+|.+ |+++||++|||+++.++....... ..
T Consensus 45 -~~~~~~~~g~~A~~~l~~~l~g~~V~~~~~~~D~~gr~~a~v~~~~~~~---l~~~Lv~~G~A~~~~~~~~~~~~~-~~ 119 (138)
T smart00318 45 -DGTTDEPFGEEAKEFLKKLLLGKKVQVEVDSKDRYGRFLGTVYLNGGNN---IAEELVKEGLAKVYRYADKDEYRV-YD 119 (138)
T ss_pred -CccccCcHHHHHHHHHHHHhCCCEEEEEEeccCCCCCEEEEEEECCCCc---HHHHHHhcCCEEEEEecCccccHh-HH
Confidence 0123689999999999999999999999999999999999999987765 999999999999998766543322 34
Q ss_pred HHHHHHHHHHHhccccccc
Q 002271 270 RLKAADLQAKKTRLRMWTN 288 (944)
Q Consensus 270 ~l~~aE~~Ak~~r~glW~~ 288 (944)
.|.+||++||++++|||++
T Consensus 120 ~l~~ae~~Ar~~~~GlW~~ 138 (138)
T smart00318 120 ELLEAEEAAKKARKGLWSD 138 (138)
T ss_pred HHHHHHHHHHHhCcCCCCC
Confidence 8999999999999999973
No 3
>cd00175 SNc Staphylococcal nuclease homologues. SNase homologues are found in bacteria, archaea, and eukaryotes. They contain no disufide bonds.
Probab=99.90 E-value=2.1e-23 Score=202.78 Aligned_cols=129 Identities=34% Similarity=0.588 Sum_probs=109.4
Q ss_pred EEecCCEEEEEEcCCceEEEEEEeeecCCCCCCCCCccccCcccccCCCccccccccchhhHHHhhhhcccCCCCCCCch
Q 002271 118 QARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAASTASAGQQSTDEP 197 (944)
Q Consensus 118 ~V~DGdt~~v~l~~~~~~~~v~laGI~~Pe~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 197 (944)
+|.|||||+|.+.+ .+.++|||+||||||+.+.+. + ...+.+|
T Consensus 1 rV~dGDt~~v~~~~-~~~~~vrL~gId~Pe~~~~~~-----------~-------------------------~~~~~~~ 43 (129)
T cd00175 1 RVIDGDTIRVRLPP-GPLITVRLSGIDAPETARPNK-----------G-------------------------KSETDEP 43 (129)
T ss_pred CeecCcEEEEEeCC-CCEEEEEEEeecCccccCCcc-----------C-------------------------CCCCCCc
Confidence 58999999998653 478899999999999975320 0 1234799
Q ss_pred hHHHHHHHHHHHhcCCeEEEEEeeccCCCcEEEEEEecCCCCHHHHHHHHHHcCcEEEeecccccchHHHHHHHHHHHHH
Q 002271 198 FALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQ 277 (944)
Q Consensus 198 ~g~eAk~f~e~~ll~r~V~v~~~~~D~~g~~~~~V~~~~g~~~~di~~~Ll~~GlA~~~~~~~~~~~~~~~~~l~~aE~~ 277 (944)
||.+|++|+..+|++++|.|.+.+.|+|||++|+|++.++.+ |+++||++|||++++++... ..+...|.+||.+
T Consensus 44 ~g~~A~~~l~~~l~~~~V~i~~~~~d~~gr~la~v~~~~~~~---v~~~Lv~~G~A~~~~~~~~~--~~~~~~l~~ae~~ 118 (129)
T cd00175 44 FGEEAKEFLKKLLLGKKVQVEVDSKDRYGRTLGTVYLNGGEN---IAEELVKEGLARVYRYYPDD--SEYYDELLEAEEA 118 (129)
T ss_pred hHHHHHHHHHHHhCCCEEEEEEccCCCCCCEEEEEEeCCCCc---HHHHHHhcCCEEEEEECCCC--cHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999977454 99999999999999876544 2345689999999
Q ss_pred HHHhccccccc
Q 002271 278 AKKTRLRMWTN 288 (944)
Q Consensus 278 Ak~~r~glW~~ 288 (944)
||++++|||++
T Consensus 119 Ak~~k~GiW~~ 129 (129)
T cd00175 119 AKKARKGLWSD 129 (129)
T ss_pred HHHhCcCCCCC
Confidence 99999999974
No 4
>KOG2039 consensus Transcriptional coactivator p100 [Transcription]
Probab=99.88 E-value=3.7e-22 Score=245.43 Aligned_cols=516 Identities=25% Similarity=0.342 Sum_probs=358.1
Q ss_pred ceeEEEEEEEEeCCEEEEecCCCCCCCCCcceEEEEeeccCCCCCCCCCCCCCchhHHHHHHHHHhhcCCcEEEEEEEEE
Q 002271 302 QNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKIGNPRKDEKPAAYAREAREFLRTRLIGRQVNVQMEYS 381 (944)
Q Consensus 302 ~~~~~~V~~V~~gD~i~v~~~~~~~~~~~~~~~v~L~~i~~P~~~~~~~~~~~~~~~~ea~e~Lr~~~~Gk~v~v~~~y~ 381 (944)
+...|.|..|.+||+++|+. . +.+.|+.+..++|+++.+|++.....+ .++||++++++|+|+.++||.|.|..++.
T Consensus 3 ~~~~~~v~~v~s~d~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~g-~d~p~~~~~~~~~~~~~~~k~~~v~~~~~ 79 (875)
T KOG2039|consen 3 QRLVGYVKAVLSGDAFVIRG-S-PRAGPPPEFQINLSNVKAPNEARRDKG-VDEPFAWESREFLRKSEIGKEVAVTRDQM 79 (875)
T ss_pred eEEeeeEEEEeccCccEEEc-c-cccCCCCCceEEEeecCCccccccCCC-CCCCcChhhHHHHHHHhccceeeeEEeee
Confidence 34579999999999999998 2 234567799999999999998743222 37999999999999999999999999993
Q ss_pred eecccccccccccCCCCCCCCCCCCCcCccccCCCCCCcccCccccceeeEEEEEecCCCCCCCCCchhhhhcccCCCCC
Q 002271 382 RKVVVEAAPVAAGAKGPAGTKGPAGTKGQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPA 461 (944)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (944)
+.. . .|.+|.+++ +
T Consensus 80 ~~~-----------------~--------------------------~~e~~~~~~-----------------------~ 93 (875)
T KOG2039|consen 80 SAN-----------------N--------------------------GREVGFIYL-----------------------G 93 (875)
T ss_pred ccc-----------------c--------------------------ccccceeec-----------------------C
Confidence 221 1 377888887 2
Q ss_pred CccHHHHHHhcCcEEEEEecCccccchhHHHHHHHHHHHHHcCCCCCCCCCCCcceeeeCCccccccccccchhhhcCCc
Q 002271 462 GVNVAELVVSRGLGNVINHRDFEERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKARDFLPFLQRSRR 541 (944)
Q Consensus 462 ~~nv~~~lv~~G~a~v~~~~~~~~~s~~~~~l~~ae~~A~~~~~G~~~~~~~~~~~i~d~~~~~~~~ak~fl~~l~~~~~ 541 (944)
+.++++.|+..||+.+.+.... .+.+...|.+.|.+|++.++|+|+. - .+-+.++.. ++...+.|+..+ .++.
T Consensus 94 ~~~~a~~lv~~g~~~~~~~~~~--~~~~~~~l~~~~~~~k~~~~g~w~~-~--~~~~~~~~~-~~~~p~~~~~~~-~~~~ 166 (875)
T KOG2039|consen 94 DENSAESLVKEGLLDVRDEGVR--NSSYFKTLDEVEVQAKQSGRGIWSK-L--DHFIRNLKD-SALNPAELVDAV-GGKP 166 (875)
T ss_pred cchhHHHHHhccCCcccccccc--cchhhhhhhhhhhhhhhhccccccc-c--ccceeeccc-cccccHHHHHhc-CCce
Confidence 4799999999999999764322 1778899999999999999999992 1 122566643 455667777665 5799
Q ss_pred ccEEEEEEecCC-EEEEeecCCceeEEEEEeccCCCCC----------CCcchHHHHHHHHHHhcCceEEEEEEEECCCC
Q 002271 542 IPAVVEYVLSGH-RFKVLIPKETCSIAFSFSGVRCPGR----------NERYSNEALLLMRQKILQRDVEIEVETVDRTG 610 (944)
Q Consensus 542 ~~~vVe~V~~G~-~~kv~ip~e~~~I~~~LaGI~~P~~----------~e~w~~EA~~f~k~~llqR~V~v~v~~~Dk~G 610 (944)
+.|+|++|.+|+ +.+++.-.+...+++.|+|+.||.. ..+|+.+|..|+..++++|++.+.+.+...+-
T Consensus 167 ~~~~ve~v~~~~~~~rv~~~p~~~~~~v~lSg~~~P~~~~~s~~~~~~~~~~~~~a~~f~~~~~~~r~~~i~~~~~~~~~ 246 (875)
T KOG2039|consen 167 VNAIVEHVRDGEDTVRVLLRPELKYVTVRLSGKRCPSQGPPSDGSPSVPDPFADEAKLFSEDRLLQRAVAIPLESEENYV 246 (875)
T ss_pred eeeehhhccChhhhhhHHhccccceeEEecccccCCCCCCCCCCCCCCCCcHHHHHHHhcccchhhhceeeeeccccccc
Confidence 999999999999 5666643377789999999999982 26899999999999999999999999987765
Q ss_pred cEEEEEEeCCccHHHHHHHcCCEEEeeccCCCCCC--chHHHHHHHHHHHhhcccc-cccccccccccCC-c--------
Q 002271 611 TFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIP--DSHLLEQAEKSAKSQKLKI-WENYVEGEEVSNG-A-------- 678 (944)
Q Consensus 611 ~~ig~L~~~~~nIa~~Lv~~GLA~v~~~~s~~~~~--~~~~L~~AE~~AK~~k~gi-W~~~~~~~~~~~~-~-------- 678 (944)
.++|+++++..+|+..|+.+|++.+. .++....+ ....++.+|..++..+..+ |+++..+....+. .
T Consensus 247 ~~~g~v~~~~~~i~~~~~~~~~~k~v-~~s~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~q~~~s~~~~~~~~~~~~~v 325 (875)
T KOG2039|consen 247 FFVGDVLYPDGNIALELLSEGLAKCV-DWSKNEIPCGAAKKLRAAERLAKEHRLRVLWKNYQVPLSTSESIDDKGFSGKV 325 (875)
T ss_pred cccccccccccceeeehhccchHHHH-HhhhhccCchhhhhhhHHhhccchhHHHHHHhccccccchheeecccccccee
Confidence 57889988888999999999999886 44433332 2345888999999999998 9998664321100 0
Q ss_pred -----cc----cCCCCcEEEEEEEEEe-----------------------------------------------------
Q 002271 679 -----AV----EGKQKEVLKVVVTEIL----------------------------------------------------- 696 (944)
Q Consensus 679 -----~~----~~~~~~~~~V~VT~V~----------------------------------------------------- 696 (944)
.. ....+....+.++.|.
T Consensus 326 ~e~~~~d~~~~~~~sg~~~~~~~~~i~~pr~~~~~~~~~p~~~~~q~~a~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~ 405 (875)
T KOG2039|consen 326 VEVLVSDCVLVALDSGSENKLFLSSIRLPRAGEPGRSLKPYISPVQLVAREFLRKKLIGKRVILQMDVIRPRRENVPTKV 405 (875)
T ss_pred eeeeccCceEEecCCCCceEEEeeeccCccccccccccCCccccHHHHhhhhhhhhccCceeeEeeeccccccccccccc
Confidence 00 0000111111111111
Q ss_pred ----cCCe---EEEEEcCc----hhHHHHHHHHHHHHhcCCCCCCCCCCccCCeEEEEEcCC-CceEEEEEEeeccCccc
Q 002271 697 ----GGGK---FYVQQVGD----QKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSAD-NSWNRAMIVNAPREKVE 764 (944)
Q Consensus 697 ----sp~~---FyVQ~~~~----~~Le~L~~~L~~~~~~~~p~~~~~~p~~G~lcaA~fs~D-~~WYRA~I~~v~~~~~~ 764 (944)
+++. +++....+ .....+-.+++..|. .-+.......+|..++..+..+ +.|++..+..+.
T Consensus 406 c~~~~~~~~~~a~~~~~kg~~~~v~~~~~~~~~s~~~d--~ll~~E~~~~~~~~~~~s~~~~~~~~~~~~~~~i~----- 478 (875)
T KOG2039|consen 406 CALPLGGGKNVAELLVKKGLATVVRKRQDDEQRSSHYD--LLLVAEAIAIKGKKGCHSKKLDPTLRITDLTVDIV----- 478 (875)
T ss_pred ccccCCCcceeeEEEecccchhhhhhHhhhhhhcchhh--hhhcchHHHHhhhhhhcccCCCcceeechhhhhhh-----
Confidence 1221 11111110 111112222222221 1111112233444444444334 579999888875
Q ss_pred cCCCEEEEEEeecCCeeeecCCCcccCCccccCcccccceeeecceec--CC-------CCCCCcHHHHHHHhhccccCC
Q 002271 765 SVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAYIKI--PA-------LEDEYGPEAAEFLNEHTYNSS 835 (944)
Q Consensus 765 ~~~~~v~V~fVDYGn~e~V~~s~Lr~Lp~~f~~lP~qAi~c~LagV~p--~~-------~~~~ws~eA~~~f~~lllv~g 835 (944)
.+....+.+.|.|+........+..-..-...+|.....|.++.-.. +. .+..|.++++.+.+. ++..
T Consensus 479 -~n~~~~~~~~~~~~~~~~~v~~~~~gs~~~~~~pk~~~~~~~~~~g~~~~~~~r~~~~~~e~~~~~~~~~~~~--~vl~ 555 (875)
T KOG2039|consen 479 -RNKVQFLPSLDRGNRVEAIVEAVISGSRLRLYIPKETCYCQFALAGIDCPSGARNDVQEGEPFSEEAIEFTRS--LVLQ 555 (875)
T ss_pred -cCcEEeehhhccccceeeeeeeeeccccceeccCCcceeEEEeeccccCcccccccccccCCccHHHHHHhhh--heec
Confidence 45567888888888766655555555455567788777777655443 21 267899999999999 7888
Q ss_pred CEEEEEEEEEeCCCCcccCCCCccEEEEEEEecCCCCcHHHHHHHcCCeeEecccccCchhhHHHHHHHHHHHHHHH-hh
Q 002271 836 NEFRALVEERDSSGGKLKGQGTGTLLHVTLVAVDAEISINTLMVQEGLARVERRKRWGSRDRQAALENLEKFQEEAK-TA 914 (944)
Q Consensus 836 k~l~a~V~~~~~~g~~~~~~~~~~~~~VtL~d~~~~~sIn~~LV~~GlA~~~~~~~~~~~~~~~~~~~l~~aqe~Ak-~~ 914 (944)
+.+.+.+..+..+|. .+.. ++. +.+.++...++++||+-.. - . ..+...+..|..++..|+ +.
T Consensus 556 ~~~~l~v~~~~~~~~---------~l~~-~~~-~~~~~~s~~~~e~~L~~~~-~-~---~e~~~~~~~~~s~~~~ak~~~ 619 (875)
T KOG2039|consen 556 REVELEVEITDKNGN---------FLGS-LYE-DSKTNLSLKLLEQGLAPEH-F-A---AERSSEYPPLESAELPAKLEQ 619 (875)
T ss_pred cceEEEEeeeccCcc---------cccc-ccc-cccccchhhhhhhhcCccc-h-h---hhhhhhccchhhhhhccccch
Confidence 999999998886541 1111 121 2367888889999998876 1 1 234567788999999999 99
Q ss_pred cccccc
Q 002271 915 RIGMWQ 920 (944)
Q Consensus 915 r~giW~ 920 (944)
..+||.
T Consensus 620 k~~~~~ 625 (875)
T KOG2039|consen 620 KLKIWL 625 (875)
T ss_pred hcceee
Confidence 999996
No 5
>PRK06518 hypothetical protein; Provisional
Probab=99.85 E-value=1.1e-20 Score=191.86 Aligned_cols=137 Identities=15% Similarity=0.121 Sum_probs=109.6
Q ss_pred hcCCceeEEEEEEecCCEEEEEEc--CCceEEEEEEeeecCCCCCCCCCccccCcccccCCCccccccccchhhHHHhhh
Q 002271 107 NKGRPMQGIVEQARDGSTLRVYLL--PEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAA 184 (944)
Q Consensus 107 ~k~~~~~a~Ve~V~DGdt~~v~l~--~~~~~~~v~laGI~~Pe~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 184 (944)
.....+.|.| +|+|||||++... .....++|||+||||||++..+. .
T Consensus 19 ~~~~~~~G~v-~V~DGDTl~l~~~~~~~~~~~~VRL~GIDAPE~~Q~c~---------~--------------------- 67 (177)
T PRK06518 19 NNVVIFHGRA-QVTSGVTFKLIADGWRKEITRDIRLYGVDTCAPRQKAR---------L--------------------- 67 (177)
T ss_pred cccccccceE-EEEcCCEEEEeeccccCCCCeEEEEEEEcCCCCCCccc---------C---------------------
Confidence 5667888999 7999999999521 11236789999999999875320 0
Q ss_pred hcccCCCCCCCchhHHHHHHHHHHHhcCCeEEEEEeeccCCCcEEEEEEecCCCCHHHHHHHHHHcCcEEEeecccccch
Q 002271 185 STASAGQQSTDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMME 264 (944)
Q Consensus 185 ~~~~~~~~~~~~p~g~eAk~f~e~~ll~r~V~v~~~~~D~~g~~~~~V~~~~g~~~~di~~~Ll~~GlA~~~~~~~~~~~ 264 (944)
..+.+|||.+|+.|+..+++++.|++...+ |+|||++|+|+.. |. ||+++||++|||+.+.-..+...
T Consensus 68 -------~~~~wp~G~~A~~~L~~li~gk~V~~~~~~-D~ygR~lA~~~~~-g~---dln~~mV~~G~A~ay~~~~~~~~ 135 (177)
T PRK06518 68 -------GDQEWPCGAVATAWLVTKTLNKWLSCRQAR-MENGVHYAQCFVD-GV---DIAALGLAEGMAVLSKDDHEDPG 135 (177)
T ss_pred -------CCCCCcHHHHHHHHHHHHHCCCeEEEEEec-ccCCCEEEEEEEC-CE---EHHHHHHhCCCEEEEeeccCCCC
Confidence 124799999999999999999999999877 9999999999874 44 49999999999998754333211
Q ss_pred HHHHHHHHHHHHHHHHhcccccccc
Q 002271 265 EDAKRRLKAADLQAKKTRLRMWTNY 289 (944)
Q Consensus 265 ~~~~~~l~~aE~~Ak~~r~glW~~~ 289 (944)
...|..+|++||++++|||+..
T Consensus 136 ---~~~y~~aE~~AR~~k~GLW~~~ 157 (177)
T PRK06518 136 ---PAQYASLEEKARKAYRGLWSST 157 (177)
T ss_pred ---HHHHHHHHHHHHHhCCCCCCCC
Confidence 2379999999999999999853
No 6
>smart00318 SNc Staphylococcal nuclease homologues.
Probab=99.85 E-value=2.6e-20 Score=183.23 Aligned_cols=134 Identities=34% Similarity=0.508 Sum_probs=110.1
Q ss_pred eeEEEEEEEEeCCEEEEecCCCCCCCCCcceEEEEeeccCCCCCCCCCC--CCCchhHHHHHHHHHhhcCCcEEEEEEEE
Q 002271 303 NFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKIGNPRKD--EKPAAYAREAREFLRTRLIGRQVNVQMEY 380 (944)
Q Consensus 303 ~~~~~V~~V~~gD~i~v~~~~~~~~~~~~~~~v~L~~i~~P~~~~~~~~--~~~~~~~~ea~e~Lr~~~~Gk~v~v~~~y 380 (944)
.+.|+|++|+|||||.|..++. ...+|+|++|+||+....... ...+|||.+|++||+++|.|+.|.+.++.
T Consensus 2 ~~~~~V~~V~DGDT~~v~~~~~------~~~~vrL~gIdaPe~~~~~~~~~~~~~~~g~~A~~~l~~~l~g~~V~~~~~~ 75 (138)
T smart00318 2 EIRGVVERVLDGDTIRVRLPKN------KLITIRLSGIDAPETARPNKGDGTTDEPFGEEAKEFLKKLLLGKKVQVEVDS 75 (138)
T ss_pred ceeEEEEEEecCCEEEEEeCCC------CEEEEEEEeccCCccCCCCCCCccccCcHHHHHHHHHHHHhCCCEEEEEEec
Confidence 5789999999999999987542 379999999999998754332 13689999999999999999999999865
Q ss_pred EeecccccccccccCCCCCCCCCCCCCcCccccCCCCCCcccCccccceeeEEEEEecCCCCCCCCCchhhhhcccCCCC
Q 002271 381 SRKVVVEAAPVAAGAKGPAGTKGPAGTKGQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQP 460 (944)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (944)
. |. ++|.+|+|++ .
T Consensus 76 ~--------------------D~------------------------~gr~~a~v~~----------------------~ 89 (138)
T smart00318 76 K--------------------DR------------------------YGRFLGTVYL----------------------N 89 (138)
T ss_pred c--------------------CC------------------------CCCEEEEEEE----------------------C
Confidence 3 22 2488999998 2
Q ss_pred CCccHHHHHHhcCcEEEEEecCccccchhHHHHHHHHHHHHHcCCCCCC
Q 002271 461 AGVNVAELVVSRGLGNVINHRDFEERSNYYDALLAAEARAKAGKKGCYS 509 (944)
Q Consensus 461 ~~~nv~~~lv~~G~a~v~~~~~~~~~s~~~~~l~~ae~~A~~~~~G~~~ 509 (944)
+|.|||+.||++|||+++....... ...++.|.+||++|+++++|||+
T Consensus 90 ~~~~l~~~Lv~~G~A~~~~~~~~~~-~~~~~~l~~ae~~Ar~~~~GlW~ 137 (138)
T smart00318 90 GGNNIAEELVKEGLAKVYRYADKDE-YRVYDELLEAEEAAKKARKGLWS 137 (138)
T ss_pred CCCcHHHHHHhcCCEEEEEecCccc-cHhHHHHHHHHHHHHHhCcCCCC
Confidence 5678999999999999988653321 12278999999999999999997
No 7
>PF00567 TUDOR: Tudor domain; InterPro: IPR008191 There are multiple copies of this domain in the Drosophila melanogaster tudor protein and it has been identified in several RNA-binding proteins []. Although the function of this domain is unknown, in Drosophila melanogaster the tudor protein is required during oogenesis for the formation of primordial germ cells and for normal abdominal segmentation [].; PDB: 3NTI_A 3NTK_B 3NTH_A 2DIQ_A 3FDR_A 3PNW_O 3S6W_A 3PMT_A 2WAC_A 2O4X_A ....
Probab=99.83 E-value=2.3e-20 Score=177.34 Aligned_cols=119 Identities=33% Similarity=0.521 Sum_probs=98.4
Q ss_pred CCcEEEEEEEEEecCCeEEEEEcC-chhHHHHHHHHHHHHhcCCCCCCCCCCccCCeEEEEEcCCCceEEEEEEeeccCc
Q 002271 684 QKEVLKVVVTEILGGGKFYVQQVG-DQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVNAPREK 762 (944)
Q Consensus 684 ~~~~~~V~VT~V~sp~~FyVQ~~~-~~~Le~L~~~L~~~~~~~~p~~~~~~p~~G~lcaA~fs~D~~WYRA~I~~v~~~~ 762 (944)
.++.+.|.||+|.+|++||++... ...++.|+++|+.++..... .....+.+|..|++.+..|+.||||+|....
T Consensus 2 ~~~~~~v~It~v~~~~~~~v~~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~w~Ra~I~~~~--- 77 (121)
T PF00567_consen 2 VGKTFEVYITHVDSPGEFYVQPDSADKAYEKLQEELQDYYENNPK-SPSPESNPGEGCLCVVSEDGRWYRAVITVDI--- 77 (121)
T ss_dssp ---EEEEEEEEECTTSEEEEEECCCHHHHHHHHHHHHHHHHHS-C-TTCST--TTEEEEEEETTTSEEEEEEEEEEE---
T ss_pred CCCEEEEEEEEEecCCEEEEEEcCCHHHHHHHHHHHHHHHhcccc-cCccccccCCEEEEEEecCCceeeEEEEEec---
Confidence 467899999999999999998776 47899999999999977544 2345678999999999999999999993322
Q ss_pred cccCCCEEEEEEeecCCeeeecCCCcccCCccccCcccccceeeecc
Q 002271 763 VESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAY 809 (944)
Q Consensus 763 ~~~~~~~v~V~fVDYGn~e~V~~s~Lr~Lp~~f~~lP~qAi~c~Lag 809 (944)
.++.+.|+|||||+++.|+.++||.||++|..+|+||++|+|+|
T Consensus 78 ---~~~~~~V~~iD~G~~~~v~~~~l~~l~~~~~~~P~~a~~~~L~g 121 (121)
T PF00567_consen 78 ---DENQYKVFLIDYGNTEKVSASDLRPLPPEFASLPPQAIKCKLAG 121 (121)
T ss_dssp ---CTTEEEEEETTTTEEEEEEGGGEEE--HHHCSSSSSCEEEEET-
T ss_pred ---ccceeEEEEEecCceEEEcHHHhhhhCHHHhhCChhhEEEEEcC
Confidence 68999999999999999999999999999999999999999986
No 8
>cd00175 SNc Staphylococcal nuclease homologues. SNase homologues are found in bacteria, archaea, and eukaryotes. They contain no disufide bonds.
Probab=99.82 E-value=2.3e-19 Score=174.39 Aligned_cols=126 Identities=36% Similarity=0.543 Sum_probs=105.9
Q ss_pred EEEeCCEEEEecCCCCCCCCCcceEEEEeeccCCCCCCCCC--CCCCchhHHHHHHHHHhhcCCcEEEEEEEEEeecccc
Q 002271 310 EVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKIGNPRK--DEKPAAYAREAREFLRTRLIGRQVNVQMEYSRKVVVE 387 (944)
Q Consensus 310 ~V~~gD~i~v~~~~~~~~~~~~~~~v~L~~i~~P~~~~~~~--~~~~~~~~~ea~e~Lr~~~~Gk~v~v~~~y~~~~~~~ 387 (944)
+|+|||||.|...+. ...+|+|++|+||++..+.. ....+|||.+|++||+++|.|+.|.+.++..
T Consensus 1 rV~dGDt~~v~~~~~------~~~~vrL~gId~Pe~~~~~~~~~~~~~~~g~~A~~~l~~~l~~~~V~i~~~~~------ 68 (129)
T cd00175 1 RVIDGDTIRVRLPPG------PLITVRLSGIDAPETARPNKGKSETDEPFGEEAKEFLKKLLLGKKVQVEVDSK------ 68 (129)
T ss_pred CeecCcEEEEEeCCC------CEEEEEEEeecCccccCCccCCCCCCCchHHHHHHHHHHHhCCCEEEEEEccC------
Confidence 589999999988542 37899999999999875431 3458999999999999999999999988653
Q ss_pred cccccccCCCCCCCCCCCCCcCccccCCCCCCcccCccccceeeEEEEEecCCCCCCCCCchhhhhcccCCCCCCccHHH
Q 002271 388 AAPVAAGAKGPAGTKGPAGTKGQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPAGVNVAE 467 (944)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~ 467 (944)
|. ++|.+|+|++. ++.|||+
T Consensus 69 --------------d~------------------------~gr~la~v~~~----------------------~~~~v~~ 88 (129)
T cd00175 69 --------------DR------------------------YGRTLGTVYLN----------------------GGENIAE 88 (129)
T ss_pred --------------CC------------------------CCCEEEEEEeC----------------------CCCcHHH
Confidence 32 25889999981 3589999
Q ss_pred HHHhcCcEEEEEecCccccchhHHHHHHHHHHHHHcCCCCCC
Q 002271 468 LVVSRGLGNVINHRDFEERSNYYDALLAAEARAKAGKKGCYS 509 (944)
Q Consensus 468 ~lv~~G~a~v~~~~~~~~~s~~~~~l~~ae~~A~~~~~G~~~ 509 (944)
.||++|||+++...... +.++..|.+||++|+++++|||+
T Consensus 89 ~Lv~~G~A~~~~~~~~~--~~~~~~l~~ae~~Ak~~k~GiW~ 128 (129)
T cd00175 89 ELVKEGLARVYRYYPDD--SEYYDELLEAEEAAKKARKGLWS 128 (129)
T ss_pred HHHhcCCEEEEEECCCC--cHHHHHHHHHHHHHHHhCcCCCC
Confidence 99999999999876432 56899999999999999999997
No 9
>PF00565 SNase: Staphylococcal nuclease homologue; InterPro: IPR006021 Staphylococcus aureus nuclease (SNase) homologues, previously thought to be restricted to bacteria and archaea, are also in eukaryotes. Staphylococcal nuclease has multidomain organisation []. The human cellular coactivator p100 contains four repeats, each of which is a SNase homologue. These repeats are unlikely to possess SNase-like activities as each lacks equivalent SNase catalytic residues, yet they may mediate p100's single-stranded DNA-binding function []. alA variety of proteins including many that are still uncharacterised belong to this group.; GO: 0003676 nucleic acid binding, 0016788 hydrolase activity, acting on ester bonds; PDB: 2PZT_A 2KQ3_A 2PZU_A 2PW5_A 2KHS_B 3QON_A 3QOJ_A 2OXP_A 3QOL_A 2PYK_A ....
Probab=99.76 E-value=1.5e-18 Score=162.90 Aligned_cols=106 Identities=29% Similarity=0.521 Sum_probs=87.3
Q ss_pred EEEEeeecCCCCCCCCCccccCcccccCCCccccccccchhhHHHhhhhcccCCCCCCCchhHHHHHHHHHHHhcCCeEE
Q 002271 137 QVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAASTASAGQQSTDEPFALDAKYFTEMRVLNREVR 216 (944)
Q Consensus 137 ~v~laGI~~Pe~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~eAk~f~e~~ll~r~V~ 216 (944)
+|||+|||||++.+.. .+.+|||.+|+.|++.+|++++|.
T Consensus 1 ~vrL~gI~~Pe~~~~~----------------------------------------~~~~~~~~~A~~~l~~~l~~~~~~ 40 (108)
T PF00565_consen 1 KVRLAGIDAPETNQPD----------------------------------------KPEEPYGQEAKEFLRELLLGRQVV 40 (108)
T ss_dssp EEEETTEE-SSSTCCC----------------------------------------TTTSTTHHHHHHHHHHHHHTCSCE
T ss_pred CEEEEEEECCCCCCCC----------------------------------------CccchHHHHHHHHHHHHhCCCeee
Confidence 6999999999987521 347999999999999999999999
Q ss_pred EEEeec--cCCCcEEEEEEecCCCCHHHHHHHHHHcCcEEEeecccccchHHHHHHHHHHHHHHHHhccccccc
Q 002271 217 IVLEGV--DKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRMWTN 288 (944)
Q Consensus 217 v~~~~~--D~~g~~~~~V~~~~g~~~~di~~~Ll~~GlA~~~~~~~~~~~~~~~~~l~~aE~~Ak~~r~glW~~ 288 (944)
+...+. |++||++|+|+++ +.+ ||++||++|||+++...... ......|..||++||+.|+|||++
T Consensus 41 ~~~~~~~~d~~gr~~~~v~~~-~~~---in~~Ll~~GlA~v~~~~~~~--~~~~~~~~~ae~~A~~~k~GiW~~ 108 (108)
T PF00565_consen 41 VEVDDIKQDKYGRLLAYVYVD-GED---INEELLEEGLARVYRRYPSN--SEYYASLLQAEEEARKAKKGIWSE 108 (108)
T ss_dssp EEEEESSBSTTSCEEEEEEET-TEE---HHHHHHHTTSSEE-CGBTTB--CTTHHHHHHHHHHHHHTT-GGGCT
T ss_pred ecccccCCCCCCceeEEEEEe-chh---hhHHHHhCCeEEEEEecCCC--cHHHHHHHHHHHHHHHhCcCCCCC
Confidence 999877 9999999999987 443 99999999999998643321 223458999999999999999985
No 10
>PRK06518 hypothetical protein; Provisional
Probab=99.76 E-value=1.2e-17 Score=169.61 Aligned_cols=136 Identities=16% Similarity=0.221 Sum_probs=106.2
Q ss_pred cceeEEEEEEEEeCCEEEEecCCCCCCCCCcceEEEEeeccCCCCCCCC-CCCCCchhHHHHHHHHHhhcCCcEEEEEEE
Q 002271 301 DQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKIGNPR-KDEKPAAYAREAREFLRTRLIGRQVNVQME 379 (944)
Q Consensus 301 ~~~~~~~V~~V~~gD~i~v~~~~~~~~~~~~~~~v~L~~i~~P~~~~~~-~~~~~~~~~~ea~e~Lr~~~~Gk~v~v~~~ 379 (944)
...++|+| +|+|||||.|..+.. .....++|||.+|+||+..... .+....|||.+|++||+.++.|+.|.+...
T Consensus 21 ~~~~~G~v-~V~DGDTl~l~~~~~---~~~~~~~VRL~GIDAPE~~Q~c~~~~~~wp~G~~A~~~L~~li~gk~V~~~~~ 96 (177)
T PRK06518 21 VVIFHGRA-QVTSGVTFKLIADGW---RKEITRDIRLYGVDTCAPRQKARLGDQEWPCGAVATAWLVTKTLNKWLSCRQA 96 (177)
T ss_pred cccccceE-EEEcCCEEEEeeccc---cCCCCeEEEEEEEcCCCCCCcccCCCCCCcHHHHHHHHHHHHHCCCeEEEEEe
Confidence 35689999 799999999975321 1112689999999999986432 123567999999999999999999998753
Q ss_pred EEeecccccccccccCCCCCCCCCCCCCcCccccCCCCCCcccCccccceeeEEEEEecCCCCCCCCCchhhhhcccCCC
Q 002271 380 YSRKVVVEAAPVAAGAKGPAGTKGPAGTKGQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQ 459 (944)
Q Consensus 380 y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 459 (944)
. |. ++|.++.|++
T Consensus 97 ~---------------------D~------------------------ygR~lA~~~~---------------------- 109 (177)
T PRK06518 97 R---------------------ME------------------------NGVHYAQCFV---------------------- 109 (177)
T ss_pred c---------------------cc------------------------CCCEEEEEEE----------------------
Confidence 2 22 2488999997
Q ss_pred CCCccHHHHHHhcCcEEEEEecCccccchhHHHHHHHHHHHHHcCCCCCCCC
Q 002271 460 PAGVNVAELVVSRGLGNVINHRDFEERSNYYDALLAAEARAKAGKKGCYSSK 511 (944)
Q Consensus 460 ~~~~nv~~~lv~~G~a~v~~~~~~~~~s~~~~~l~~ae~~A~~~~~G~~~~~ 511 (944)
+|.|||++||++|||+++....+ ..+...|..+|+.|+++++|||+.+
T Consensus 110 -~g~dln~~mV~~G~A~ay~~~~~---~~~~~~y~~aE~~AR~~k~GLW~~~ 157 (177)
T PRK06518 110 -DGVDIAALGLAEGMAVLSKDDHE---DPGPAQYASLEEKARKAYRGLWSST 157 (177)
T ss_pred -CCEEHHHHHHhCCCEEEEeeccC---CCCHHHHHHHHHHHHHhCCCCCCCC
Confidence 57899999999999999875432 1234568899999999999999964
No 11
>COG1525 Micrococcal nuclease (thermonuclease) homologs [DNA replication, recombination, and repair]
Probab=99.73 E-value=2.3e-17 Score=171.69 Aligned_cols=129 Identities=29% Similarity=0.415 Sum_probs=108.1
Q ss_pred eeEEEEEEecCCEEEEEEcCCceEEEEEEeeecCCCCCCCCCccccCcccccCCCccccccccchhhHHHhhhhcccCCC
Q 002271 112 MQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAASTASAGQ 191 (944)
Q Consensus 112 ~~a~Ve~V~DGdt~~v~l~~~~~~~~v~laGI~~Pe~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (944)
..+.|.+|.|||||.|... ..+.++|||+|||+||+.+.+ .
T Consensus 42 ~~~~v~~v~dGDT~~v~~~-~~~~~~iRl~gIdaPe~~~~~-----------~--------------------------- 82 (192)
T COG1525 42 PDSTVVRVIDGDTLKVRGE-GGQAVKIRLAGIDAPETKQTC-----------A--------------------------- 82 (192)
T ss_pred CCCceEEecCCCeEEEecC-CCceeEEEEeccCCCcccccC-----------C---------------------------
Confidence 5678999999999999854 357889999999999987421 0
Q ss_pred CCCCchhHHHHHHHHHHHhcC-CeEEEEEee-ccCCCcEEEEEEecCCCCHHHHHHHHHHcCcEEEeecccccchHHHHH
Q 002271 192 QSTDEPFALDAKYFTEMRVLN-REVRIVLEG-VDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYIEWSANMMEEDAKR 269 (944)
Q Consensus 192 ~~~~~p~g~eAk~f~e~~ll~-r~V~v~~~~-~D~~g~~~~~V~~~~g~~~~di~~~Ll~~GlA~~~~~~~~~~~~~~~~ 269 (944)
....+|||.+|+.|++.+|++ +.|.+.+.. .|+|||++|+|+ .+|. |+|++||++|||+++. .. ....
T Consensus 83 ~~~~~~~G~~A~~~l~~~l~~~~~v~~~~~~~~d~y~R~la~v~-~~~~---~v~~~lV~~G~A~~~~--~~----~~~~ 152 (192)
T COG1525 83 GGKSQPCGEEAREFLRNLLLGRRTVECDLADRKDRYGRLLAYVT-VDGT---DVNLELVKEGLARVYY--NS----EYGG 152 (192)
T ss_pred cccccchHHHHHHHHHHHhcCCceEEEecCCcccCCCcEEEEEE-ECCE---EHHHHHHhCCCEEEec--cc----cchH
Confidence 123699999999999999996 888888888 999999999999 5555 4999999999999987 11 1234
Q ss_pred HHHHHHHHHHHhcccccccc
Q 002271 270 RLKAADLQAKKTRLRMWTNY 289 (944)
Q Consensus 270 ~l~~aE~~Ak~~r~glW~~~ 289 (944)
.|..||..||+.++|||+..
T Consensus 153 ~~~~ae~~Ar~~~~GiW~~~ 172 (192)
T COG1525 153 EYAEAEEEARKRRLGIWSDD 172 (192)
T ss_pred HHHHHHHHHHHcccCccCCC
Confidence 79999999999999999984
No 12
>COG1525 Micrococcal nuclease (thermonuclease) homologs [DNA replication, recombination, and repair]
Probab=99.64 E-value=1.9e-15 Score=157.23 Aligned_cols=130 Identities=28% Similarity=0.385 Sum_probs=108.1
Q ss_pred eEEEEEEEEeCCEEEEecCCCCCCCCCcceEEEEeeccCCCCCCCCCCCCCchhHHHHHHHHHhhcCC-cEEEEEEEEEe
Q 002271 304 FTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKIGNPRKDEKPAAYAREAREFLRTRLIG-RQVNVQMEYSR 382 (944)
Q Consensus 304 ~~~~V~~V~~gD~i~v~~~~~~~~~~~~~~~v~L~~i~~P~~~~~~~~~~~~~~~~ea~e~Lr~~~~G-k~v~v~~~y~~ 382 (944)
..++|.+|++||||.+..... ...+|||.+|++|+..+.....+..|||.+|++||++++.| +.|.+...- +
T Consensus 42 ~~~~v~~v~dGDT~~v~~~~~------~~~~iRl~gIdaPe~~~~~~~~~~~~~G~~A~~~l~~~l~~~~~v~~~~~~-~ 114 (192)
T COG1525 42 PDSTVVRVIDGDTLKVRGEGG------QAVKIRLAGIDAPETKQTCAGGKSQPCGEEAREFLRNLLLGRRTVECDLAD-R 114 (192)
T ss_pred CCCceEEecCCCeEEEecCCC------ceeEEEEeccCCCcccccCCcccccchHHHHHHHHHHHhcCCceEEEecCC-c
Confidence 568999999999999998542 37899999999999986654567899999999999999998 555544322 1
Q ss_pred ecccccccccccCCCCCCCCCCCCCcCccccCCCCCCcccCccccceeeEEEEEecCCCCCCCCCchhhhhcccCCCCCC
Q 002271 383 KVVVEAAPVAAGAKGPAGTKGPAGTKGQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPAG 462 (944)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (944)
. |. ++|.++.|+. +|
T Consensus 115 ~------------------d~------------------------y~R~la~v~~-----------------------~~ 129 (192)
T COG1525 115 K------------------DR------------------------YGRLLAYVTV-----------------------DG 129 (192)
T ss_pred c------------------cC------------------------CCcEEEEEEE-----------------------CC
Confidence 1 33 3588999996 78
Q ss_pred ccHHHHHHhcCcEEEEEecCccccchhHHHHHHHHHHHHHcCCCCCCCC
Q 002271 463 VNVAELVVSRGLGNVINHRDFEERSNYYDALLAAEARAKAGKKGCYSSK 511 (944)
Q Consensus 463 ~nv~~~lv~~G~a~v~~~~~~~~~s~~~~~l~~ae~~A~~~~~G~~~~~ 511 (944)
.|||+.||++|||+++. ++.++..|.+||+.|++.++|||+..
T Consensus 130 ~~v~~~lV~~G~A~~~~------~~~~~~~~~~ae~~Ar~~~~GiW~~~ 172 (192)
T COG1525 130 TDVNLELVKEGLARVYY------NSEYGGEYAEAEEEARKRRLGIWSDD 172 (192)
T ss_pred EEHHHHHHhCCCEEEec------cccchHHHHHHHHHHHHcccCccCCC
Confidence 99999999999999988 24578999999999999999999984
No 13
>PF00565 SNase: Staphylococcal nuclease homologue; InterPro: IPR006021 Staphylococcus aureus nuclease (SNase) homologues, previously thought to be restricted to bacteria and archaea, are also in eukaryotes. Staphylococcal nuclease has multidomain organisation []. The human cellular coactivator p100 contains four repeats, each of which is a SNase homologue. These repeats are unlikely to possess SNase-like activities as each lacks equivalent SNase catalytic residues, yet they may mediate p100's single-stranded DNA-binding function []. alA variety of proteins including many that are still uncharacterised belong to this group.; GO: 0003676 nucleic acid binding, 0016788 hydrolase activity, acting on ester bonds; PDB: 2PZT_A 2KQ3_A 2PZU_A 2PW5_A 2KHS_B 3QON_A 3QOJ_A 2OXP_A 3QOL_A 2PYK_A ....
Probab=99.59 E-value=5.9e-15 Score=138.49 Aligned_cols=100 Identities=30% Similarity=0.504 Sum_probs=87.4
Q ss_pred EEEEeccCCCCCC------CcchHHHHHHHHHHhcCceEEEEEEEE--CCCCcEEEEEEeCCccHHHHHHHcCCEEEeec
Q 002271 567 AFSFSGVRCPGRN------ERYSNEALLLMRQKILQRDVEIEVETV--DRTGTFLGSLWESRTNVAVILLEAGLAKLQTS 638 (944)
Q Consensus 567 ~~~LaGI~~P~~~------e~w~~EA~~f~k~~llqR~V~v~v~~~--Dk~G~~ig~L~~~~~nIa~~Lv~~GLA~v~~~ 638 (944)
+++|+||++|+.. ++|+.+|++|++++++++++.+.+.+. |++|+++|.|+.++.||+..||++|||+++..
T Consensus 1 ~vrL~gI~~Pe~~~~~~~~~~~~~~A~~~l~~~l~~~~~~~~~~~~~~d~~gr~~~~v~~~~~~in~~Ll~~GlA~v~~~ 80 (108)
T PF00565_consen 1 KVRLAGIDAPETNQPDKPEEPYGQEAKEFLRELLLGRQVVVEVDDIKQDKYGRLLAYVYVDGEDINEELLEEGLARVYRR 80 (108)
T ss_dssp EEEETTEE-SSSTCCCTTTSTTHHHHHHHHHHHHHTCSCEEEEEESSBSTTSCEEEEEEETTEEHHHHHHHTTSSEE-CG
T ss_pred CEEEEEEECCCCCCCCCccchHHHHHHHHHHHHhCCCeeeecccccCCCCCCceeEEEEEechhhhHHHHhCCeEEEEEe
Confidence 5899999999965 899999999999999999999999988 99999999999999999999999999999742
Q ss_pred cCCCCCCchHHHHHHHHHHHhhccccccc
Q 002271 639 FGSDRIPDSHLLEQAEKSAKSQKLKIWEN 667 (944)
Q Consensus 639 ~s~~~~~~~~~L~~AE~~AK~~k~giW~~ 667 (944)
+. ........|..||+.||+.++|||++
T Consensus 81 ~~-~~~~~~~~~~~ae~~A~~~k~GiW~~ 108 (108)
T PF00565_consen 81 YP-SNSEYYASLLQAEEEARKAKKGIWSE 108 (108)
T ss_dssp BT-TBCTTHHHHHHHHHHHHHTT-GGGCT
T ss_pred cC-CCcHHHHHHHHHHHHHHHhCcCCCCC
Confidence 22 24456788999999999999999984
No 14
>smart00333 TUDOR Tudor domain. Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished).
Probab=99.30 E-value=4.6e-12 Score=105.44 Aligned_cols=56 Identities=43% Similarity=0.785 Sum_probs=51.2
Q ss_pred CCccCCeEEEEEcCCCceEEEEEEeeccCccccCCCEEEEEEeecCCeeeecCCCcccCCccc
Q 002271 733 NPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSL 795 (944)
Q Consensus 733 ~p~~G~lcaA~fs~D~~WYRA~I~~v~~~~~~~~~~~v~V~fVDYGn~e~V~~s~Lr~Lp~~f 795 (944)
.+++|++|+|+| .|+.||||+|+++. +.+.+.|+|+|||+.+.|+.++||+||+.+
T Consensus 2 ~~~~G~~~~a~~-~d~~wyra~I~~~~------~~~~~~V~f~D~G~~~~v~~~~l~~l~~~~ 57 (57)
T smart00333 2 TFKVGDKVAARW-EDGEWYRARIIKVD------GEQLYEVFFIDYGNEEVVPPSDLRPLPEEL 57 (57)
T ss_pred CCCCCCEEEEEe-CCCCEEEEEEEEEC------CCCEEEEEEECCCccEEEeHHHeecCCCCC
Confidence 478999999999 89999999999995 338999999999999999999999999753
No 15
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=99.28 E-value=5e-12 Score=101.44 Aligned_cols=48 Identities=48% Similarity=0.946 Sum_probs=44.3
Q ss_pred CCeEEEEEcCCCceEEEEEEeeccCccccCCCEEEEEEeecCCeeeecCCCccc
Q 002271 737 GEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRP 790 (944)
Q Consensus 737 G~lcaA~fs~D~~WYRA~I~~v~~~~~~~~~~~v~V~fVDYGn~e~V~~s~Lr~ 790 (944)
|++|+|+|++|+.||||+|+++. .++.+.|+|+||||++.|+.++|++
T Consensus 1 G~~c~a~~~~d~~wyra~V~~~~------~~~~~~V~f~DyG~~~~v~~~~l~~ 48 (48)
T cd04508 1 GDLCLAKYSDDGKWYRAKITSIL------SDGKVEVFFVDYGNTEVVPLSDLRP 48 (48)
T ss_pred CCEEEEEECCCCeEEEEEEEEEC------CCCcEEEEEEcCCCcEEEeHHHcCC
Confidence 78999999989999999999995 4789999999999999999998874
No 16
>KOG2279 consensus Kinase anchor protein AKAP149, contains KH and Tudor RNA-binding domains [Signal transduction mechanisms]
Probab=99.00 E-value=2.8e-10 Score=129.01 Aligned_cols=189 Identities=16% Similarity=0.101 Sum_probs=144.0
Q ss_pred CCCCcEEEEEEEEEecCCeEEEEEcCc---hhHHHHHHHHHHHHhcCCCCCC-CCCCccCCeEEEEEcCCCceEEEEEEe
Q 002271 682 GKQKEVLKVVVTEILGGGKFYVQQVGD---QKVASVQQQLASLNLQEAPVIG-AFNPKKGEIVLAQFSADNSWNRAMIVN 757 (944)
Q Consensus 682 ~~~~~~~~V~VT~V~sp~~FyVQ~~~~---~~Le~L~~~L~~~~~~~~p~~~-~~~p~~G~lcaA~fs~D~~WYRA~I~~ 757 (944)
++.+..+.|.|..+++.++||+|.... ..|..|-..|..+|......+. +..+..+-+|+|.- .++.|.||.++.
T Consensus 401 fpd~i~cev~V~s~i~a~hlf~pq~tip~F~aLrsldqwm~l~y~eq~t~pelP~P~~~t~~sAAp~-g~~awpra~lvd 479 (608)
T KOG2279|consen 401 FPDNIDCEVKVLSAIRADHLFLPQQTIPCFLALRSLDQWMELAYDEQLTHPELPKPLVATISSAAPT-GISAWPRAYLVD 479 (608)
T ss_pred cCCCceEEeeeehhhcccceeeccccchhhhhhhhHHHHHHHHhhcccCCcCCCcchhhceeeeccc-CCCCccceEEEe
Confidence 456778999999999999999999874 4577777788888873222221 23356778888874 678999999998
Q ss_pred eccCccccCCCE-EEEEEeecCCeeeecCCCcccCCccccCcccccceeeecceecCCCCCCCcHHHHHHHhhccccCCC
Q 002271 758 APREKVESVNDK-FEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSN 836 (944)
Q Consensus 758 v~~~~~~~~~~~-v~V~fVDYGn~e~V~~s~Lr~Lp~~f~~lP~qAi~c~LagV~p~~~~~~ws~eA~~~f~~lllv~gk 836 (944)
... ..+. +.+.||||| ...++..+||++...|.+||+|+-+.-|+.|.|......|+++|...|+. |+.++
T Consensus 480 ~~d-----et~l~I~~~~VdyG-Y~~~~~ddlrqiRsd~~slPfq~tEv~l~~v~pl~~t~~~Spea~h~~s~--Msi~~ 551 (608)
T KOG2279|consen 480 TSD-----ETKLDIGLELVDYG-YAIELPDDLRQIRSDPDSLPFQATEVDLSLVTPLTETKKSSPEATHTLSC--MSISE 551 (608)
T ss_pred ccC-----cccchhhheeeccc-ccccchhhhhhhhcccccCCcccchhhHhheeccCCCcCcCcccccchhh--hhhhh
Confidence 752 3344 899999999 88999999999999999999999999999999998888999999999999 66655
Q ss_pred EEEEEEEEEeCCCCcccCCCCccEEEEEEEecC------CCCcHHHHHHHcCCeeEec
Q 002271 837 EFRALVEERDSSGGKLKGQGTGTLLHVTLVAVD------AEISINTLMVQEGLARVER 888 (944)
Q Consensus 837 ~l~a~V~~~~~~g~~~~~~~~~~~~~VtL~d~~------~~~sIn~~LV~~GlA~~~~ 888 (944)
...+.-+....+ ....++.||... +.+-+++.|++.|+|....
T Consensus 552 ~a~~~~v~~~~d---------t~Lp~~ql~s~~~D~k~~n~vk~~q~l~ecGla~~ad 600 (608)
T KOG2279|consen 552 AASMSGVDNLED---------TYLPGSQLFSLLSDLKCCNSVKHAQPLNECGLASVAD 600 (608)
T ss_pred hhhhhccccccc---------ccchhhhhhhhhccccccchhhhhhhhhhcccccccc
Confidence 443333322211 124455665432 2456889999999998764
No 17
>smart00743 Agenet Tudor-like domain present in plant sequences. Domain in plant sequences with possible chromatin-associated functions.
Probab=98.50 E-value=2.4e-07 Score=78.29 Aligned_cols=56 Identities=29% Similarity=0.410 Sum_probs=51.1
Q ss_pred CCccCCeEEEEEcCCCceEEEEEEeeccCccccCCCEEEEEEee--cCCeeeecCCCcccCCcc
Q 002271 733 NPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYID--YGNQELVPYNKLRPIDPS 794 (944)
Q Consensus 733 ~p~~G~lcaA~fs~D~~WYRA~I~~v~~~~~~~~~~~v~V~fVD--YGn~e~V~~s~Lr~Lp~~ 794 (944)
..++|+.|-|+|++++.||||+|+++. .++.+.|+|.| +|+.+.++.++||++|+.
T Consensus 2 ~~~~G~~Ve~~~~~~~~W~~a~V~~~~------~~~~~~V~~~~~~~~~~e~v~~~~LRp~~~w 59 (61)
T smart00743 2 DFKKGDRVEVFSKEEDSWWEAVVTKVL------GDGKYLVRYLTESEPLKETVDWSDLRPHPPW 59 (61)
T ss_pred CcCCCCEEEEEECCCCEEEEEEEEEEC------CCCEEEEEECCCCcccEEEEeHHHcccCCCC
Confidence 367999999999999999999999995 46889999999 999999999999999863
No 18
>PF06003 SMN: Survival motor neuron protein (SMN); InterPro: IPR010304 This family consists of several eukaryotic survival motor neuron (SMN) proteins. The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs.; GO: 0003723 RNA binding, 0006397 mRNA processing, 0005634 nucleus, 0005737 cytoplasm; PDB: 1MHN_A 4A4G_A 3S6N_M 4A4E_A 1G5V_A 4A4H_A 4A4F_A 2D9T_A.
Probab=98.11 E-value=3.7e-06 Score=91.74 Aligned_cols=59 Identities=25% Similarity=0.381 Sum_probs=48.1
Q ss_pred CCCCccCCeEEEEEcCCCceEEEEEEeeccCccccCCCEEEEEEeecCCeeeecCCCcccCCcc
Q 002271 731 AFNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPS 794 (944)
Q Consensus 731 ~~~p~~G~lcaA~fs~D~~WYRA~I~~v~~~~~~~~~~~v~V~fVDYGn~e~V~~s~Lr~Lp~~ 794 (944)
....++|+.|.|.|++|++||-|.|..|.. ..+.+.|.|.+|||.|.|.+++|++....
T Consensus 66 ~~~WkvGd~C~A~~s~Dg~~Y~A~I~~i~~-----~~~~~~V~f~gYgn~e~v~l~dL~~~~~~ 124 (264)
T PF06003_consen 66 NKKWKVGDKCMAVYSEDGQYYPATIESIDE-----EDGTCVVVFTGYGNEEEVNLSDLKPSEGD 124 (264)
T ss_dssp TT---TT-EEEEE-TTTSSEEEEEEEEEET-----TTTEEEEEETTTTEEEEEEGGGEEETT--
T ss_pred ccCCCCCCEEEEEECCCCCEEEEEEEEEcC-----CCCEEEEEEcccCCeEeeehhhhcccccc
Confidence 357999999999999999999999999963 56799999999999999999999999765
No 19
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=96.44 E-value=0.013 Score=48.05 Aligned_cols=52 Identities=17% Similarity=0.382 Sum_probs=41.1
Q ss_pred CCCccCCeEEEEEcCCCceEEEEEEeeccCccccCCCEEEEEEeecCCeeeecCCCcc
Q 002271 732 FNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLR 789 (944)
Q Consensus 732 ~~p~~G~lcaA~fs~D~~WYRA~I~~v~~~~~~~~~~~v~V~fVDYGn~e~V~~s~Lr 789 (944)
.....|+.|.++++.++.||.|+|++.+. ....+.|.|-| |....++.++|+
T Consensus 4 ~k~~~Ge~V~~rWP~s~lYYe~kV~~~d~-----~~~~y~V~Y~D-Gtel~lke~dik 55 (55)
T PF09465_consen 4 RKFAIGEVVMVRWPGSSLYYEGKVLSYDS-----KSDRYTVLYED-GTELELKENDIK 55 (55)
T ss_dssp SSS-SS-EEEEE-TTTS-EEEEEEEEEET-----TTTEEEEEETT-S-EEEEECCCEE
T ss_pred ccccCCCEEEEECCCCCcEEEEEEEEecc-----cCceEEEEEcC-CCEEEecccccC
Confidence 45678999999999999999999999863 68999999999 999888888764
No 20
>KOG2279 consensus Kinase anchor protein AKAP149, contains KH and Tudor RNA-binding domains [Signal transduction mechanisms]
Probab=96.29 E-value=0.0011 Score=76.44 Aligned_cols=186 Identities=16% Similarity=0.155 Sum_probs=130.6
Q ss_pred CCCcEEEEEEEEEecCCeEEEEEcCc--hhHHHHHHHHHHHHhcCCCCCCCCCCccCCeEEEEEcCCCceEEEEEEeecc
Q 002271 683 KQKEVLKVVVTEILGGGKFYVQQVGD--QKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVNAPR 760 (944)
Q Consensus 683 ~~~~~~~V~VT~V~sp~~FyVQ~~~~--~~Le~L~~~L~~~~~~~~p~~~~~~p~~G~lcaA~fs~D~~WYRA~I~~v~~ 760 (944)
..++++.++.+.-..+.+||.|...+ -.++.+..+...++.+.... ......++..++...-.+-||++.+....
T Consensus 313 ~~gey~s~yssasn~~~hi~t~pyt~~v~~~qic~~egkqh~~n~vl~--ml~~~~p~~~f~eLnl~~~~~p~lps~al- 389 (608)
T KOG2279|consen 313 HAGEYLSVYSSASNHPNHIWTQPYTSRVLQLQICVNEGKQHYENSVLE--MLTVHVPDIVFAELNLNGSWYPALPSGAL- 389 (608)
T ss_pred hhhhhhhhhhhccCccceEEeccccchhhhhhhheecchhHHHHHHHh--hhhccCCccccccccccCccCcccCcccc-
Confidence 35788888888888899999999874 23455556666666553322 11233444555544447889999888765
Q ss_pred CccccCCCEEEEEEeecCCeeeecCCCcccCCccccCcccccceeeecceecCCCCCCCcHHHHHHHhhccccCCCEEEE
Q 002271 761 EKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSNEFRA 840 (944)
Q Consensus 761 ~~~~~~~~~v~V~fVDYGn~e~V~~s~Lr~Lp~~f~~lP~qAi~c~LagV~p~~~~~~ws~eA~~~f~~lllv~gk~l~a 840 (944)
........++||+....+....+..|...+..+|.+++.|.++ +. .-..|...+..---.+ -..-+.|.+
T Consensus 390 -----~~L~td~~wL~fpd~i~cev~V~s~i~a~hlf~pq~tip~F~a-Lr---sldqwm~l~y~eq~t~-pelP~P~~~ 459 (608)
T KOG2279|consen 390 -----ENLNTDLYWLDFPDNIDCEVKVLSAIRADHLFLPQQTIPCFLA-LR---SLDQWMELAYDEQLTH-PELPKPLVA 459 (608)
T ss_pred -----cccCCcceEEEcCCCceEEeeeehhhcccceeeccccchhhhh-hh---hHHHHHHHHhhcccCC-cCCCcchhh
Confidence 4566678999999999999999999999999999999999998 22 2356766655521110 123366788
Q ss_pred EEEEEeCCCCcccCCCCccEEEEEEEecC--CCCcHHHHHHHcCCeeEec
Q 002271 841 LVEERDSSGGKLKGQGTGTLLHVTLVAVD--AEISINTLMVQEGLARVER 888 (944)
Q Consensus 841 ~V~~~~~~g~~~~~~~~~~~~~VtL~d~~--~~~sIn~~LV~~GlA~~~~ 888 (944)
.+....+.|. +....+.|+++. .+.+|.-.||..||+....
T Consensus 460 t~~sAAp~g~-------~awpra~lvd~~det~l~I~~~~VdyGY~~~~~ 502 (608)
T KOG2279|consen 460 TISSAAPTGI-------SAWPRAYLVDTSDETKLDIGLELVDYGYAIELP 502 (608)
T ss_pred ceeeecccCC-------CCccceEEEeccCcccchhhheeecccccccch
Confidence 8877665442 345567777753 4678999999999887653
No 21
>PF05641 Agenet: Agenet domain; InterPro: IPR008395 This domain is related to the TUDOR domain IPR008191 from INTERPRO []. The function of the agenet domain is unknown. This signature matches one of the two Agenet domains in the FMR proteins [].; GO: 0003723 RNA binding; PDB: 2BKD_N 3O8V_A 3KUF_A 3H8Z_A.
Probab=95.04 E-value=0.047 Score=47.26 Aligned_cols=54 Identities=31% Similarity=0.505 Sum_probs=35.5
Q ss_pred ccCCeEEEEEcCC---CceEEEEEEeeccCccccCCCEEEEEEeecCC--------eeeecCCCcccCCcc
Q 002271 735 KKGEIVLAQFSAD---NSWNRAMIVNAPREKVESVNDKFEVFYIDYGN--------QELVPYNKLRPIDPS 794 (944)
Q Consensus 735 ~~G~lcaA~fs~D---~~WYRA~I~~v~~~~~~~~~~~v~V~fVDYGn--------~e~V~~s~Lr~Lp~~ 794 (944)
++|+.+=+...++ +.||+|.|++.. .++++.|.|-|+-. .++|+...|||.|+.
T Consensus 2 ~~G~~VEV~s~e~g~~gaWf~a~V~~~~------~~~~~~V~Y~~~~~~~~~~~~l~e~V~~~~iRP~pP~ 66 (68)
T PF05641_consen 2 KKGDEVEVSSDEDGFRGAWFPATVLKEN------GDDKYLVEYDDLPDEDGESPPLKEWVDARRIRPCPPP 66 (68)
T ss_dssp -TT-EEEEEE-SBTT--EEEEEEEEEEE------TT-EEEEEETT-SS--------EEEEEGGGEEE----
T ss_pred CCCCEEEEEEcCCCCCcEEEEEEEEEeC------CCcEEEEEECCcccccccccccEEEechheEECcCcC
Confidence 5688887776554 469999999985 33499999976653 578999999999874
No 22
>PF11717 Tudor-knot: RNA binding activity-knot of a chromodomain ; PDB: 2EKO_A 2RO0_A 2RNZ_A 1WGS_A 3E9G_A 3E9F_A 2K3X_A 2K3Y_A 2EFI_A 2F5K_F ....
Probab=92.92 E-value=0.25 Score=40.91 Aligned_cols=51 Identities=27% Similarity=0.582 Sum_probs=40.3
Q ss_pred ccCCeEEEEEcCCCceEEEEEEeeccCccccCCCEEEEEEeecCCe--eeecCCCcc
Q 002271 735 KKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQ--ELVPYNKLR 789 (944)
Q Consensus 735 ~~G~lcaA~fs~D~~WYRA~I~~v~~~~~~~~~~~v~V~fVDYGn~--e~V~~s~Lr 789 (944)
++|+.|.+.+ .++.||.|+|+++.. ..+...+-|+|..+..+ +.|+.++|+
T Consensus 2 ~vG~~v~~~~-~~~~~y~A~I~~~r~---~~~~~~YyVHY~g~nkR~DeWV~~~~i~ 54 (55)
T PF11717_consen 2 EVGEKVLCKY-KDGQWYEAKILDIRE---KNGEPEYYVHYQGWNKRLDEWVPESRIR 54 (55)
T ss_dssp -TTEEEEEEE-TTTEEEEEEEEEEEE---CTTCEEEEEEETTSTGCC-EEEETTTEE
T ss_pred CcCCEEEEEE-CCCcEEEEEEEEEEe---cCCCEEEEEEcCCCCCCceeeecHHHcc
Confidence 5799999998 689999999999853 12346789999988876 778888875
No 23
>KOG4327 consensus mRNA splicing protein SMN (survival motor neuron) [RNA processing and modification]
Probab=91.63 E-value=0.11 Score=53.17 Aligned_cols=55 Identities=27% Similarity=0.280 Sum_probs=46.8
Q ss_pred CCCCccCCeEEEEEcCCCceEEEEEEeeccCccccCCCEEEEEEeecCCeeeecCCCccc
Q 002271 731 AFNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRP 790 (944)
Q Consensus 731 ~~~p~~G~lcaA~fs~D~~WYRA~I~~v~~~~~~~~~~~v~V~fVDYGn~e~V~~s~Lr~ 790 (944)
....++|+.|.|.|+++++.|=|.|..+.. ..+.+.|.|+=|||.+.|.+++|-+
T Consensus 65 ~~~wKVgdkc~A~Y~e~g~~ypatidsi~~-----~~~tcvv~ylgygnr~Ev~lsDLl~ 119 (218)
T KOG4327|consen 65 LQQWKVGDKCSAIYSEDGCIYPATIDSIDF-----KRETCVVVYLGYGNREEVNLSDLLS 119 (218)
T ss_pred hhhheecceeeeeeecCcccccceeccccc-----ccCceEEEEEeecchhhhhHHHhcc
Confidence 356899999999999999999999998852 3556669999999999999888754
No 24
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=91.28 E-value=0.46 Score=46.23 Aligned_cols=105 Identities=18% Similarity=0.334 Sum_probs=71.6
Q ss_pred CCcEEEEEEEEEecCCeEEEEEcCchhHHHHHHHHHHHHhcCCCCCCCCCCccCCeEEEEEcCCC-ceEEEEEEeeccCc
Q 002271 684 QKEVLKVVVTEILGGGKFYVQQVGDQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADN-SWNRAMIVNAPREK 762 (944)
Q Consensus 684 ~~~~~~V~VT~V~sp~~FyVQ~~~~~~Le~L~~~L~~~~~~~~p~~~~~~p~~G~lcaA~fs~D~-~WYRA~I~~v~~~~ 762 (944)
.|-++..+|....+.++|.|+..+...-......+-... ... ...+++||.|+|+...++ .|+-|+|+......
T Consensus 11 DG~YY~GtV~~~~~~~~~lV~f~~~~~~~v~~~~iI~~~----~~~-~~~L~~GD~VLA~~~~~~~~Y~Pg~V~~~~~~~ 85 (124)
T PF15057_consen 11 DGFYYPGTVKKCVSSGQFLVEFDDGDTQEVPISDIIALS----DAM-RHSLQVGDKVLAPWEPDDCRYGPGTVIAGPERR 85 (124)
T ss_pred CCcEEeEEEEEccCCCEEEEEECCCCEEEeChHHeEEcc----Ccc-cCcCCCCCEEEEecCcCCCEEeCEEEEECcccc
Confidence 467889999888899999999955311111111111111 111 246899999999965443 59999999743211
Q ss_pred cccCCCEEEEEEeecCCeeeecCCCcccCCccc
Q 002271 763 VESVNDKFEVFYIDYGNQELVPYNKLRPIDPSL 795 (944)
Q Consensus 763 ~~~~~~~v~V~fVDYGn~e~V~~s~Lr~Lp~~f 795 (944)
...+..+.|.|.| |....|+...++.||+.+
T Consensus 86 -~~~~~~~~V~f~n-g~~~~vp~~~~~~I~~~~ 116 (124)
T PF15057_consen 86 -ASEDKEYTVRFYN-GKTAKVPRGEVIWISPSY 116 (124)
T ss_pred -ccCCceEEEEEEC-CCCCccchhhEEECCHHH
Confidence 1268899999999 778899999999998754
No 25
>PF15057 DUF4537: Domain of unknown function (DUF4537)
Probab=90.20 E-value=0.85 Score=44.38 Aligned_cols=65 Identities=20% Similarity=0.252 Sum_probs=50.3
Q ss_pred CCeEEEEEcCCCceEEEEEEeeccCccccCCCEEEEEEeecCCeeeecCCCcccCCccccCcccccceeeecc
Q 002271 737 GEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAY 809 (944)
Q Consensus 737 G~lcaA~fs~D~~WYRA~I~~v~~~~~~~~~~~v~V~fVDYGn~e~V~~s~Lr~Lp~~f~~lP~qAi~c~Lag 809 (944)
|+-++|+...||.||||.|.+.. ..+.+.|.| |.|....|+.+++-++.... .-|-+.=-+.|+-
T Consensus 1 g~~VlAR~~~DG~YY~GtV~~~~------~~~~~lV~f-~~~~~~~v~~~~iI~~~~~~-~~~L~~GD~VLA~ 65 (124)
T PF15057_consen 1 GQKVLARREEDGFYYPGTVKKCV------SSGQFLVEF-DDGDTQEVPISDIIALSDAM-RHSLQVGDKVLAP 65 (124)
T ss_pred CCeEEEeeCCCCcEEeEEEEEcc------CCCEEEEEE-CCCCEEEeChHHeEEccCcc-cCcCCCCCEEEEe
Confidence 67799999999999999999985 678899999 88999999999888776543 3333444444444
No 26
>KOG3026 consensus Splicing factor SPF30 [RNA processing and modification]
Probab=89.19 E-value=0.48 Score=49.98 Aligned_cols=56 Identities=23% Similarity=0.304 Sum_probs=50.3
Q ss_pred CCccCCeEEEEEcCCCceEEEEEEeeccCccccCCCEEEEEEeecCCeeeecCCCcccCCc
Q 002271 733 NPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDP 793 (944)
Q Consensus 733 ~p~~G~lcaA~fs~D~~WYRA~I~~v~~~~~~~~~~~v~V~fVDYGn~e~V~~s~Lr~Lp~ 793 (944)
.+.+|+-|.|.|++|+.||=|.|-.+.. ....+.|.|--||+...++..+||..+.
T Consensus 90 ~w~vg~K~~A~~~ddg~~y~AtIe~ita-----~~~~~ai~f~s~~~a~~t~~a~lr~~e~ 145 (262)
T KOG3026|consen 90 GWKVGDKVQAVFSDDGQIYDATIEHITA-----MEGTVAIIFASYGTAPSTYAARLRSPEE 145 (262)
T ss_pred ccccCCEEEEeecCCCceEEeehhhccC-----CCCceeEEEeeccccccccHhhccCcch
Confidence 6889999999999999999999999852 4688999999999999999999998764
No 27
>KOG3038 consensus Histone acetyltransferase SAGA associated factor SGF29 [General function prediction only]
Probab=85.49 E-value=2.8 Score=45.13 Aligned_cols=149 Identities=17% Similarity=0.188 Sum_probs=83.2
Q ss_pred CccHHHHHHHcCCEEEeeccCCCCCCchHHHHHHH-HHHHhhcccccccccccccc---cCCcc----------------
Q 002271 620 RTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAE-KSAKSQKLKIWENYVEGEEV---SNGAA---------------- 679 (944)
Q Consensus 620 ~~nIa~~Lv~~GLA~v~~~~s~~~~~~~~~L~~AE-~~AK~~k~giW~~~~~~~~~---~~~~~---------------- 679 (944)
..++++.|+.++-++.. ... ...++.+...| .+++...+-+|......... +..+.
T Consensus 64 ~~~v~e~l~~~~~~~~~--~~~--~~~~~r~~~~el~k~~~~~lp~~~~~~~~~p~~~gaip~~~~~~~~~gd~VAa~v~ 139 (264)
T KOG3038|consen 64 EVNVSEILITQLDLGRP--EGP--TGQMRRGVLMELLKQKAMTLPLWIGKPGKPPPLCGAIPAQGDYVLLKGDEVAARVK 139 (264)
T ss_pred hHHHHHHHHHHHHhccc--CCc--cchhhhhhhhhHHhhhccccccccCCCCCCCcccccccccCCccccCCceeeeeee
Confidence 45677778777776552 211 12222222223 24566778888764332111 11010
Q ss_pred ccCCCCcEEEEEEEEEecCCeEEEEEcCc--hhHHHHHH----HHHHHHhcCCCCCCCCCCccCCeEEEEEcCCCceEEE
Q 002271 680 VEGKQKEVLKVVVTEILGGGKFYVQQVGD--QKVASVQQ----QLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRA 753 (944)
Q Consensus 680 ~~~~~~~~~~V~VT~V~sp~~FyVQ~~~~--~~Le~L~~----~L~~~~~~~~p~~~~~~p~~G~lcaA~fs~D~~WYRA 753 (944)
.....++++.+.|.++.+.+..=|...+. .+++.... .|...+....|. +.....+|.+|+|.|.+--++|||
T Consensus 140 ~~~~dg~WIlaeVv~~~~~~~ye~ev~D~Epk~d~~g~r~~~yklp~~~~~p~p~-p~~~fpp~~~VLA~YP~TTcFY~a 218 (264)
T KOG3038|consen 140 AVSEDGDWILAEVVKVSSETRYEFEVVDPEPKKDEVGNRGQLYKLPRWKLNPIPP-PTALFPPGTIVLAVYPGTTCFYKA 218 (264)
T ss_pred eccCCCCEEEEEEEEEecCCceEeEecCCCccccccccccceecccHhhcCCCCC-CccCCCCCCEEEEEcCCcceeeee
Confidence 01234678888888888777544444442 12222211 122222222222 235577899999999999999999
Q ss_pred EEEeeccCccccCCCEEEEEEeec
Q 002271 754 MIVNAPREKVESVNDKFEVFYIDY 777 (944)
Q Consensus 754 ~I~~v~~~~~~~~~~~v~V~fVDY 777 (944)
.|.+-++ .....+.|+|.|=
T Consensus 219 iVh~tp~----d~s~~y~vlffD~ 238 (264)
T KOG3038|consen 219 IVHSTPR----DGSCDYYVLFFDD 238 (264)
T ss_pred EeecCCC----CCCCcceeeeecC
Confidence 9999764 2456778888884
No 28
>PF07039 DUF1325: SGF29 tudor-like domain; InterPro: IPR010750 SAGA-associated factor 29 is involved in transcriptional regulation, probably through association with histone acetyltransferase (HAT) complexes like the TFTC-HAT or STAGA complexes. It also may be involved in MYC-mediated oncogenic transformation. It is a component of the ATAC complex, which is a complex with histone acetyltransferase activity on histones H3 and H4 []. This entry represents a domain found in yeast and human SAGA-associated factor 29 proteins that is related to the tudor domain. ; PDB: 3MP6_A 3MP1_A 3MP8_A 3MET_B 3ME9_A 3MEU_B 3MEA_A 3MEV_B 3LX7_A 3MEW_A.
Probab=78.70 E-value=2.2 Score=41.93 Aligned_cols=88 Identities=17% Similarity=0.311 Sum_probs=56.5
Q ss_pred CCcEEEEEEEEEecCC-eEEEEEcCchhHHHHHHHHHHHHhc--C-CCCC--------CCCCCccCCeEEEEEcCCCceE
Q 002271 684 QKEVLKVVVTEILGGG-KFYVQQVGDQKVASVQQQLASLNLQ--E-APVI--------GAFNPKKGEIVLAQFSADNSWN 751 (944)
Q Consensus 684 ~~~~~~V~VT~V~sp~-~FyVQ~~~~~~Le~L~~~L~~~~~~--~-~p~~--------~~~~p~~G~lcaA~fs~D~~WY 751 (944)
...++.+.|..+.+.+ .+-|+..+... . ...+... . .|++ ......+|..|+|.|.+--++|
T Consensus 16 ~~~WIla~Vv~~~~~~~rYeV~D~d~~~----~--~~~~~~~~~~iIPLP~~~~~~~~~~~~f~~g~~VLAlYP~TT~FY 89 (130)
T PF07039_consen 16 EEEWILAEVVKYNSDGNRYEVEDPDPEE----E--KKRYKLSRKQIIPLPKKAPPDTDPLAEFPKGTKVLALYPDTTCFY 89 (130)
T ss_dssp TCEEEEEEEEEEETTTTEEEEEETTTCT----T--TEEEEEEGGGEEEE-SB--TTT-GGGS--TT-EEEEE-TTSSEEE
T ss_pred CCCEEEEEEEEEeCCCCEEEEecCCCCC----C--CceEEeCHHHEEECCCccCCCCCchhhCCCCCEEEEECCCCceEE
Confidence 4678999999988766 89999887421 0 0011111 0 1111 1245679999999999888999
Q ss_pred EEEEEeeccCccccCCCEEEEEEeecCCee
Q 002271 752 RAMIVNAPREKVESVNDKFEVFYIDYGNQE 781 (944)
Q Consensus 752 RA~I~~v~~~~~~~~~~~v~V~fVDYGn~e 781 (944)
||.|.+... ...+.+.+.|-|-....
T Consensus 90 ~A~V~~~p~----~~~~~y~l~Fedd~~~~ 115 (130)
T PF07039_consen 90 PATVVSPPK----KKSGEYKLKFEDDEDAD 115 (130)
T ss_dssp EEEEEEE-S----STTS-EEEEECTTTSTT
T ss_pred EEEEEeCCC----CCCCcEEEEEeCCCCcC
Confidence 999998842 25788999999988764
No 29
>cd05162 PWWP The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes. The function of the PWWP domain is still not known precisely; however, based on the fact that other regions of PWWP-domain proteins are responsible for nuclear localization and DNA-binding, is likely that the PWWP domain acts as a site for protein-protein binding interactions, influencing chromatin remodeling and thereby regulating transcriptional processes. Some PWWP-domain proteins have been linked to cancer or other diseases; some are known to function as growth factors.
Probab=55.56 E-value=22 Score=31.96 Aligned_cols=62 Identities=21% Similarity=0.442 Sum_probs=47.4
Q ss_pred ccCCeEEEEEcCCCceEEEEEEeeccCcc----ccCCCEEEEEEeecCCeeeecCCCcccCCccccC
Q 002271 735 KKGEIVLAQFSADNSWNRAMIVNAPREKV----ESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSS 797 (944)
Q Consensus 735 ~~G~lcaA~fs~D~~WYRA~I~~v~~~~~----~~~~~~v~V~fVDYGn~e~V~~s~Lr~Lp~~f~~ 797 (944)
++|++|-|+.. .--|.-|+|++...... ....+.+.|+|.+-.....|+.++|.++...+..
T Consensus 2 ~~GdlVwaK~~-g~pwWPa~V~~~~~~~~~~~~~~~~~~~~V~Ffg~~~~~wv~~~~l~pf~~~~~~ 67 (87)
T cd05162 2 RPGDLVWAKMK-GYPWWPALVVDPPKDSKKAKKKAKEGKVLVLFFGDKTFAWVGAERLKPFTEHKES 67 (87)
T ss_pred CCCCEEEEeCC-CCCCCCEEEccccccchhhhccCCCCEEEEEEeCCCcEEEeCccceeeccchHHh
Confidence 57999999984 44799999998752100 0124789999999777889999999999877644
No 30
>PLN00104 MYST -like histone acetyltransferase; Provisional
Probab=48.99 E-value=28 Score=40.97 Aligned_cols=58 Identities=16% Similarity=0.334 Sum_probs=43.8
Q ss_pred CCCccCCeEEEEEcCCCceEEEEEEeeccCc-cccCCCEEEEEEeecCCe--eeecCCCcc
Q 002271 732 FNPKKGEIVLAQFSADNSWNRAMIVNAPREK-VESVNDKFEVFYIDYGNQ--ELVPYNKLR 789 (944)
Q Consensus 732 ~~p~~G~lcaA~fs~D~~WYRA~I~~v~~~~-~~~~~~~v~V~fVDYGn~--e~V~~s~Lr 789 (944)
....+|+.|.|+...|+.||.|+|+++.... .......+=|+|+.+=.+ +.|+.++|.
T Consensus 52 ~~~~VGekVla~~~~Dg~~~~A~VI~~R~~~~~~~~~~~YYVHY~g~nrRlDEWV~~~rLd 112 (450)
T PLN00104 52 LPLEVGTRVMCRWRFDGKYHPVKVIERRRGGSGGPNDYEYYVHYTEFNRRLDEWVKLEQLD 112 (450)
T ss_pred ceeccCCEEEEEECCCCCEEEEEEEEEeccCCCCCCCceEEEEEecCCccHhhccCHhhcc
Confidence 4578999999999889999999999985311 001124688999988777 788888774
No 31
>smart00293 PWWP domain with conserved PWWP motif. conservation of Pro-Trp-Trp-Pro residues
Probab=47.99 E-value=40 Score=28.61 Aligned_cols=56 Identities=20% Similarity=0.435 Sum_probs=42.4
Q ss_pred ccCCeEEEEEcCCCceEEEEEEeeccCc-----cccCCCEEEEEEeecCCeeeecCCCcccC
Q 002271 735 KKGEIVLAQFSADNSWNRAMIVNAPREK-----VESVNDKFEVFYIDYGNQELVPYNKLRPI 791 (944)
Q Consensus 735 ~~G~lcaA~fs~D~~WYRA~I~~v~~~~-----~~~~~~~v~V~fVDYGn~e~V~~s~Lr~L 791 (944)
++|+++.|+.. .--|.-|+|+...... .......+.|+|..=.+...|+.++|.+|
T Consensus 2 ~~GdlVwaK~~-G~p~WPa~V~~~~~~~~~~~~~~~~~~~~~V~Ffg~~~~awv~~~~l~p~ 62 (63)
T smart00293 2 KPGDLVWAKMK-GFPWWPALVVSPKETPDNIRKRKRFENLYPVLFFGDKDTAWISSSKLFPL 62 (63)
T ss_pred CCCCEEEEECC-CCCCCCeEEcCcccCChhHhhccCCCCEEEEEEeCCCCEEEECccceeeC
Confidence 57999999973 4469999999764200 01235789999998888888999999876
No 32
>cd05834 HDGF_related The PWWP domain is an essential part of the Hepatoma Derived Growth Factor (HDGF) family of proteins, and is necessary for DNA binding by HDGF. This family of endogenous nuclear-targeted mitogens includes HRP (HDGF-related proteins 1, 2, 3, 4, or HPR1, HPR2, HPR3, HPR4, respectively) and lens epithelium-derived growth factor, LEDGF. Members of the HDGF family have been linked to human diseases, and HDGF is a prognostic factor in several types of cancer. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=46.04 E-value=33 Score=30.97 Aligned_cols=60 Identities=15% Similarity=0.211 Sum_probs=48.0
Q ss_pred CCccCCeEEEEEcCCCceEEEEEEeeccCccccCCCEEEEEEeecCCeeeecCCCcccCCccc
Q 002271 733 NPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSL 795 (944)
Q Consensus 733 ~p~~G~lcaA~fs~D~~WYRA~I~~v~~~~~~~~~~~v~V~fVDYGn~e~V~~s~Lr~Lp~~f 795 (944)
..++||+|-|+.. .--|.=|+|++.... ....+.+.|+|...+....|+.++|.++...+
T Consensus 2 ~f~~GdlVwaK~k-Gyp~WPa~I~~~~~~--~~~~~~~~V~FfGt~~~a~v~~~~l~pf~~~~ 61 (83)
T cd05834 2 QFKAGDLVFAKVK-GYPAWPARVDEPEDW--KPPGKKYPVYFFGTHETAFLKPEDLFPYTENK 61 (83)
T ss_pred CCCCCCEEEEecC-CCCCCCEEEeccccc--CCCCCEEEEEEeCCCCEeEECHHHceecccch
Confidence 3578999999973 456889999987421 12368999999999999999999999998754
No 33
>cd05841 BS69_related The PWWP domain is part of BS69 protein, a nuclear protein that specifically binds adenoviral E1A and Epstein-Barr viral EBNA2 proteins, suppressing their transactivation functions. BS69 is a multi-domain protein, containing bromo, PHD, PWWP, and MYND domains. The specific role of the PWWP domain within BS69 is not clearly identified, but BS69 functions in chromatin remodeling, consistent with other PWWP-containing proteins. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=42.60 E-value=43 Score=30.40 Aligned_cols=55 Identities=16% Similarity=0.358 Sum_probs=45.7
Q ss_pred CCccCCeEEEEEcCCCceEEEEEEeeccCccccCCCEEEEEEee-cCCeeeecCCCcccCCccc
Q 002271 733 NPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYID-YGNQELVPYNKLRPIDPSL 795 (944)
Q Consensus 733 ~p~~G~lcaA~fs~D~~WYRA~I~~v~~~~~~~~~~~v~V~fVD-YGn~e~V~~s~Lr~Lp~~f 795 (944)
+-++|++|-|+.. .=-|.=|+|++. .++.+.|+|.. -..+..|+.++|.++...+
T Consensus 6 c~~p~dLVwAK~k-Gyp~WPAkV~~~-------~~~~~~V~FFG~t~~~a~v~~~~i~~~~~~~ 61 (83)
T cd05841 6 CRPPHELVWAKLK-GFPYWPAKVMRV-------EDNQVDVRFFGGQHDRAWIPSNNIQPISTEI 61 (83)
T ss_pred cCCCCCEEEEeCC-CCCCCCEEEeec-------CCCeEEEEEcCCCCCeEEEehHHeeehhhhh
Confidence 4578999999973 335888999986 57899999988 8889999999999997754
No 34
>PF09038 53-BP1_Tudor: Tumour suppressor p53-binding protein-1 Tudor; InterPro: IPR015125 This domain consist of ten beta-strands and a carboxy-terminal alpha-helix. The amino-terminal five beta-strands and the C-terminal five beta-strands adopt folds that are identical to each other. The domain is essential for the recruitment of proteins to double stranded breaks in DNA, which is mediated by interaction with methylated Lys 79 of histone H3 []. ; PDB: 3LGL_A 1XNI_B 3LGF_A 2G3R_A 2IG0_A 3LH0_A 1SSF_A.
Probab=40.57 E-value=72 Score=30.94 Aligned_cols=48 Identities=21% Similarity=0.298 Sum_probs=34.7
Q ss_pred cCCeEEEEEcCCCceEEEEEEeeccCccccCCCEEEEEEeecCCeeeecCCCccc
Q 002271 736 KGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRP 790 (944)
Q Consensus 736 ~G~lcaA~fs~D~~WYRA~I~~v~~~~~~~~~~~v~V~fVDYGn~e~V~~s~Lr~ 790 (944)
+|.-|.|++|.++-||=++|+.- + .+.++.|.|=| |....|..++|-.
T Consensus 5 iG~rV~AkWS~n~yyY~G~I~~~-~-----~~~kykv~FdD-G~~~~v~~~div~ 52 (122)
T PF09038_consen 5 IGLRVFAKWSDNGYYYPGKITSD-K-----GKNKYKVLFDD-GYECRVLGKDIVV 52 (122)
T ss_dssp TT-EEEEESSTTSEEEEEEEEEE-E-----TTTEEEEEETT-S-EEEEECCCEEE
T ss_pred cccEEEEEEccCCcccCceEeec-C-----CCCeEEEEecC-CccceeccCcEEE
Confidence 68899999995556689988874 2 78999999866 7666666665543
No 35
>PF07039 DUF1325: SGF29 tudor-like domain; InterPro: IPR010750 SAGA-associated factor 29 is involved in transcriptional regulation, probably through association with histone acetyltransferase (HAT) complexes like the TFTC-HAT or STAGA complexes. It also may be involved in MYC-mediated oncogenic transformation. It is a component of the ATAC complex, which is a complex with histone acetyltransferase activity on histones H3 and H4 []. This entry represents a domain found in yeast and human SAGA-associated factor 29 proteins that is related to the tudor domain. ; PDB: 3MP6_A 3MP1_A 3MP8_A 3MET_B 3ME9_A 3MEU_B 3MEA_A 3MEV_B 3LX7_A 3MEW_A.
Probab=34.47 E-value=1.2e+02 Score=29.96 Aligned_cols=54 Identities=19% Similarity=0.296 Sum_probs=42.0
Q ss_pred ccCCeEEEEEc---CCCceEEEEEEeeccCccccCCCEEEEEEeecC---CeeeecCCCcccCCc
Q 002271 735 KKGEIVLAQFS---ADNSWNRAMIVNAPREKVESVNDKFEVFYIDYG---NQELVPYNKLRPIDP 793 (944)
Q Consensus 735 ~~G~lcaA~fs---~D~~WYRA~I~~v~~~~~~~~~~~v~V~fVDYG---n~e~V~~s~Lr~Lp~ 793 (944)
++|+.|||+.. .++.|-=|+|++... ..++++|.=+|-+ +.-.++.++|-+||.
T Consensus 1 q~G~~VAak~~~~~~~~~WIla~Vv~~~~-----~~~rYeV~D~d~~~~~~~~~~~~~~iIPLP~ 60 (130)
T PF07039_consen 1 QPGDQVAAKVKQGNEEEEWILAEVVKYNS-----DGNRYEVEDPDPEEEKKRYKLSRKQIIPLPK 60 (130)
T ss_dssp -TT-EEEEEECTTTTTCEEEEEEEEEEET-----TTTEEEEEETTTCTTTEEEEEEGGGEEEE-S
T ss_pred CCCCEEEEEcCCCCCCCCEEEEEEEEEeC-----CCCEEEEecCCCCCCCceEEeCHHHEEECCC
Confidence 47999999874 456799999999863 4569999999997 356788889999987
No 36
>PF11302 DUF3104: Protein of unknown function (DUF3104); InterPro: IPR021453 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=32.87 E-value=1.4e+02 Score=26.62 Aligned_cols=59 Identities=20% Similarity=0.308 Sum_probs=44.0
Q ss_pred CCccCCeEEEEEcC------CCceEEEEEEeeccCccccC-CCEEEEEEeecCCeeeecCCCcccC
Q 002271 733 NPKKGEIVLAQFSA------DNSWNRAMIVNAPREKVESV-NDKFEVFYIDYGNQELVPYNKLRPI 791 (944)
Q Consensus 733 ~p~~G~lcaA~fs~------D~~WYRA~I~~v~~~~~~~~-~~~v~V~fVDYGn~e~V~~s~Lr~L 791 (944)
.++.|++++.+-.. ++.|+=|.|+.+.-+..... ...++|--||-|....|....+..+
T Consensus 5 ~Vk~Gd~ViV~~~~~~~~~~~~dWWmg~Vi~~~ggaR~P~~~tlFQVadVDtG~I~wVnaD~Vt~I 70 (75)
T PF11302_consen 5 SVKPGDTVIVQDEQEVGQKQDKDWWMGQVIHCEGGARDPKVPTLFQVADVDTGVIRWVNADEVTHI 70 (75)
T ss_pred ccCCCCEEEEecCccccccCCCCcEEEEEEEEeccccCCCCCceEEEEEccCCeEEEEEchheeee
Confidence 47899999998644 45799999998752222212 3459999999999999987766554
No 37
>KOG3038 consensus Histone acetyltransferase SAGA associated factor SGF29 [General function prediction only]
Probab=32.59 E-value=1.2e+02 Score=33.12 Aligned_cols=57 Identities=23% Similarity=0.316 Sum_probs=41.7
Q ss_pred CCCCccCCeEEEEE---cCCCceEEEEEEeeccCccccCCCEEEEEEeecCC--eeeecCCCcccCCc
Q 002271 731 AFNPKKGEIVLAQF---SADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGN--QELVPYNKLRPIDP 793 (944)
Q Consensus 731 ~~~p~~G~lcaA~f---s~D~~WYRA~I~~v~~~~~~~~~~~v~V~fVDYGn--~e~V~~s~Lr~Lp~ 793 (944)
.+.+.+|+-++|++ ++|+.|.=|.|+.+. .+..+++.-+|==- .+.-+..+|.+||.
T Consensus 125 ~~~~~~gd~VAa~v~~~~~dg~WIlaeVv~~~------~~~~ye~ev~D~Epk~d~~g~r~~~yklp~ 186 (264)
T KOG3038|consen 125 DYVLLKGDEVAARVKAVSEDGDWILAEVVKVS------SETRYEFEVVDPEPKKDEVGNRGQLYKLPR 186 (264)
T ss_pred CccccCCceeeeeeeeccCCCCEEEEEEEEEe------cCCceEeEecCCCccccccccccceecccH
Confidence 46788999999998 468889999999986 34447777776533 44555666666664
No 38
>PF02736 Myosin_N: Myosin N-terminal SH3-like domain; InterPro: IPR004009 This domain has an SH3-like fold. It is found at the N terminus of many but not all myosins. The function of this domain is unknown.; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 2EC6_A 2W4H_M 1O1E_P 1O1D_D 1O18_A 1O1C_P 1O1B_D 1O1F_A 2W4A_M 2W4G_M ....
Probab=27.94 E-value=1.8e+02 Score=22.65 Aligned_cols=39 Identities=21% Similarity=0.210 Sum_probs=30.5
Q ss_pred eEEEEEcCCCceEEEEEEeeccCccccCCCEEEEEEeecCCeeeecCC
Q 002271 739 IVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYN 786 (944)
Q Consensus 739 lcaA~fs~D~~WYRA~I~~v~~~~~~~~~~~v~V~fVDYGn~e~V~~s 786 (944)
.|=+.- ....|-.|.|++. .++.+.|...| |..-+|+.+
T Consensus 3 ~vWvpD-~~egfv~g~I~~~-------~g~~vtV~~~~-G~~~tv~~d 41 (42)
T PF02736_consen 3 WVWVPD-PKEGFVKGEIIEE-------EGDKVTVKTED-GKEVTVKKD 41 (42)
T ss_dssp EEEEEE-SSSSEEEEEEEEE-------ESSEEEEEETT-TEEEEEEGG
T ss_pred EEEEeC-CcccEEEEEEEEE-------cCCEEEEEECC-CCEEEeCCC
Confidence 344443 3567999999987 68999999999 998888765
No 39
>PF11730 DUF3297: Protein of unknown function (DUF3297); InterPro: IPR021724 This family is expressed in Proteobacteria and Actinobacteria. The function is not known.
Probab=27.26 E-value=20 Score=30.95 Aligned_cols=29 Identities=34% Similarity=0.610 Sum_probs=21.2
Q ss_pred CceEEEEEeCC--ccHHHHHHhccceeeeec
Q 002271 16 GREFGTVILGD--KNVAMLVVSEGWAKVKEQ 44 (944)
Q Consensus 16 ~r~~g~v~~~~--~nv~~~lv~~G~akv~~~ 44 (944)
.|..|.-|-+- .||-++.|++||++|-..
T Consensus 19 ~~~iGIrfng~Er~nVeEYciSEGWvrv~~g 49 (71)
T PF11730_consen 19 ERGIGIRFNGKERTNVEEYCISEGWVRVAAG 49 (71)
T ss_pred hcCcceEECCeEcccceeEeccCCEEEeecC
Confidence 35666444442 489999999999998654
No 40
>PRK07899 rpsA 30S ribosomal protein S1; Reviewed
Probab=26.85 E-value=1.2e+03 Score=28.22 Aligned_cols=132 Identities=8% Similarity=0.099 Sum_probs=76.8
Q ss_pred CCCCcEEEEEEEEEecCC-eEEEEEcCchhHHHHHHHHHHHHhcCCCCCCCCCCccCCeEEEEEcCCCceEEEEEEeecc
Q 002271 682 GKQKEVLKVVVTEILGGG-KFYVQQVGDQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVNAPR 760 (944)
Q Consensus 682 ~~~~~~~~V~VT~V~sp~-~FyVQ~~~~~~Le~L~~~L~~~~~~~~p~~~~~~p~~G~lcaA~fs~D~~WYRA~I~~v~~ 760 (944)
.+.++.++++|..+.+.. .+.+-... ..++..-+.+.+.+ +.+....|+|+++.
T Consensus 80 ~~vGd~Ie~~V~~~~~~~g~liLS~k~-~~~~~~w~~ie~~~-----------------------e~g~~V~G~V~~v~- 134 (486)
T PRK07899 80 VEVGDEVEALVLQKEDKEGRLILSKKR-AQYERAWGTIEKIK-----------------------EKDGVVTGTVIEVV- 134 (486)
T ss_pred CCCCCEEEEEEEEEECCCCeEEEEehh-hcccchHHHHHHHh-----------------------cCCCEEEEEEEEEE-
Confidence 456899999999987543 44443322 11122333333332 13445566688874
Q ss_pred CccccCCCEEEEEEeecCCeeeecCCCcccCC-ccccCcccccceeeecceecCCCC----------CCCcHHHHHHHhh
Q 002271 761 EKVESVNDKFEVFYIDYGNQELVPYNKLRPID-PSLSSTPPLAQLCSLAYIKIPALE----------DEYGPEAAEFLNE 829 (944)
Q Consensus 761 ~~~~~~~~~v~V~fVDYGn~e~V~~s~Lr~Lp-~~f~~lP~qAi~c~LagV~p~~~~----------~~ws~eA~~~f~~ 829 (944)
+.- ++||+|....+|.+.+-.-+ ..+..+.-+-++|.+-.+.+-... ..+...-..++.+
T Consensus 135 ------k~G---~~VdlGi~gflP~Sel~~~~~~~~~~~vGq~V~vkVleid~~~~~ivLSrr~~l~~~~~~~~~~~~~~ 205 (486)
T PRK07899 135 ------KGG---LILDIGLRGFLPASLVEMRRVRDLQPYIGQEIEAKIIELDKNRNNVVLSRRAWLEQTQSEVRSEFLNQ 205 (486)
T ss_pred ------CCe---EEEEECCEEEEEhhHhcccccCChhhcCCCEEEEEEEEEECCCCEEEEEhHHHHHhhhHHHHHHHHHh
Confidence 222 47777998899887553211 233446778888888777654221 1111222244556
Q ss_pred ccccCCCEEEEEEEEEeCCC
Q 002271 830 HTYNSSNEFRALVEERDSSG 849 (944)
Q Consensus 830 lllv~gk~l~a~V~~~~~~g 849 (944)
+-.|..+.+.|..+.+.|
T Consensus 206 --lk~G~iv~G~V~~i~~~G 223 (486)
T PRK07899 206 --LQKGQVRKGVVSSIVNFG 223 (486)
T ss_pred --ccCCCEEEEEEEEEECCe
Confidence 567899999999987644
No 41
>cd06080 MUM1_like Mutated melanoma-associated antigen 1 (MUM-1) is a melanoma-associated antigen (MAA). MUM-1 belongs to the mutated or aberrantly expressed type of MAAs, along with antigens such as CDK4, beta-catenin, gp100-in4, p15, and N-acetylglucosaminyltransferase V. It is highly expressed in several types of human cancers. The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins seem to be nuclear, often DNA-binding, proteins that function as transcription factors regulating a variety of developmental processes.
Probab=25.28 E-value=1.6e+02 Score=26.65 Aligned_cols=55 Identities=20% Similarity=0.261 Sum_probs=41.8
Q ss_pred ccCCeEEEEEcCCCceEEEEEEeeccCccccCCCEEEEEEeecC-CeeeecCCCcccCCccc
Q 002271 735 KKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYG-NQELVPYNKLRPIDPSL 795 (944)
Q Consensus 735 ~~G~lcaA~fs~D~~WYRA~I~~v~~~~~~~~~~~v~V~fVDYG-n~e~V~~s~Lr~Lp~~f 795 (944)
.+|+++-|++. .--|.=|+|.++.+ ...++.|+|+.-+ ....+..++|.+-.+.|
T Consensus 2 ~~gdlVWaK~~-g~P~WPa~I~~~~~-----~~~k~~V~FfG~~~~~a~~~~~~l~p~~~~~ 57 (80)
T cd06080 2 EKNDLVWAKIQ-GYPWWPAVIKSISR-----KKQKARVNFIGDNMQSEKKGIRVVKRWLKHF 57 (80)
T ss_pred CCCCEEEEeCC-CCCCCCEEEeeecC-----CCCEEEEEEeCCCCceeccchhhcccccccH
Confidence 57999999973 44588899999863 5789999999887 66777777776655544
No 42
>PF00855 PWWP: PWWP domain; InterPro: IPR000313 Upon characterisation of WHSC1, a gene mapping to the Wolf-Hirschhornsyndrome critical region and at its C terminus similar to the Drosophila melanogaster ASH1/trithorax group proteins, a novel protein domain designated PWWP domain was identified []. The PWWP domain is named after a conserved Pro-Trp-Trp-Pro motif. It is present in proteins of nuclear origin and plays a role in cell growth and differentiation. Due to its position, the composition of amino acids close to the PWWP motif and the pattern of other domains present it has been suggested that the domain is involved in protein-protein interactions [].; PDB: 3LYI_B 2L89_A 2NLU_A 1RI0_A 1KHC_A 3QKJ_C 2DAQ_A 1N27_A 3PFS_B 3QJ6_A ....
Probab=24.25 E-value=1.7e+02 Score=25.79 Aligned_cols=58 Identities=16% Similarity=0.342 Sum_probs=44.7
Q ss_pred ccCCeEEEEEcCCCceEEEEEEeeccC-ccccCCCEEEEEEeecCCeeeecCCCcccCCc
Q 002271 735 KKGEIVLAQFSADNSWNRAMIVNAPRE-KVESVNDKFEVFYIDYGNQELVPYNKLRPIDP 793 (944)
Q Consensus 735 ~~G~lcaA~fs~D~~WYRA~I~~v~~~-~~~~~~~~v~V~fVDYGn~e~V~~s~Lr~Lp~ 793 (944)
++|++|-|+.. .--|.=|+|+..... ......+.+.|+|.+-.+...|+.++|.++..
T Consensus 2 ~~GdlVWaK~~-g~pwWPa~V~~~~~~~~~~~~~~~~~V~Ffg~~~~~wv~~~~i~~f~~ 60 (86)
T PF00855_consen 2 RPGDLVWAKLK-GYPWWPARVCDPDEKSKKKRKDGHVLVRFFGDNDYAWVKPSNIKPFSE 60 (86)
T ss_dssp STTEEEEEEET-TSEEEEEEEEECCHCTSCSSSSTEEEEEETTTTEEEEEEGGGEEECCH
T ss_pred CCCCEEEEEeC-CCCCCceEEeecccccccCCCCCEEEEEecCCCCEEEECHHHhhChhh
Confidence 57999999983 556999999987410 01225688999999888888899999998873
No 43
>COG1093 SUI2 Translation initiation factor 2, alpha subunit (eIF-2alpha) [Translation, ribosomal structure and biogenesis]
Probab=24.19 E-value=4.5e+02 Score=28.99 Aligned_cols=67 Identities=18% Similarity=0.279 Sum_probs=46.8
Q ss_pred CCCccCCeEEEEEcCCCceEEEEEEeeccCccccCCCEEEEEEeecCCee-eecCCCcccCCccccCcccccceeeecce
Q 002271 732 FNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQE-LVPYNKLRPIDPSLSSTPPLAQLCSLAYI 810 (944)
Q Consensus 732 ~~p~~G~lcaA~fs~D~~WYRA~I~~v~~~~~~~~~~~v~V~fVDYGn~e-~V~~s~Lr~Lp~~f~~lP~qAi~c~LagV 810 (944)
.-|..|+++++. |.++ .+--+-|.+--||+.+ .+++|.+
T Consensus 7 ~~PeeGEiVv~t-----------V~~V-------~~~GAyv~L~EY~g~Eg~ihiSEv---------------------- 46 (269)
T COG1093 7 EYPEEGEIVVGT-----------VKQV-------ADYGAYVELDEYPGKEGFIHISEV---------------------- 46 (269)
T ss_pred CCCCCCcEEEEE-----------EEEe-------eccccEEEeeccCCeeeeEEHHHH----------------------
Confidence 348899999987 6666 3445667777788765 3443322
Q ss_pred ecCCCCCCCcHHHHHHHhhccccCCCEEEEEEEEEeCC
Q 002271 811 KIPALEDEYGPEAAEFLNEHTYNSSNEFRALVEERDSS 848 (944)
Q Consensus 811 ~p~~~~~~ws~eA~~~f~~lllv~gk~l~a~V~~~~~~ 848 (944)
...|-....++++. |+...|+|..+++.
T Consensus 47 -----as~wVknIrd~vke-----gqkvV~kVlrVd~~ 74 (269)
T COG1093 47 -----ASGWVKNIRDYVKE-----GQKVVAKVLRVDPK 74 (269)
T ss_pred -----HHHHHHHHHHHhhc-----CCeEEEEEEEEcCC
Confidence 23577777777776 89999999998853
No 44
>PF08169 RBB1NT: RBB1NT (NUC162) domain; InterPro: IPR012603 This domain is found N-terminal to the ARID/BRIGHT domain in DNA-binding proteins of the Retinoblastoma-binding protein 1 family [].; PDB: 2YRV_A.
Probab=22.05 E-value=2.1e+02 Score=26.80 Aligned_cols=58 Identities=24% Similarity=0.365 Sum_probs=31.3
Q ss_pred cCCeEEEEEcCC-CceEEEEEEeecc-CccccCCCEEEEE-EeecCCeeeecCCCcccCCcc
Q 002271 736 KGEIVLAQFSAD-NSWNRAMIVNAPR-EKVESVNDKFEVF-YIDYGNQELVPYNKLRPIDPS 794 (944)
Q Consensus 736 ~G~lcaA~fs~D-~~WYRA~I~~v~~-~~~~~~~~~v~V~-fVDYGn~e~V~~s~Lr~Lp~~ 794 (944)
.|.+|++.-..+ ..||=|.|+.-.- +.+....+++.|+ |.| |-..+|+..+++.+...
T Consensus 8 lGkVV~V~~~~~k~~W~PALVVsPsc~ddv~VkKD~~lVRSFkD-~KfysV~rkd~~e~~~~ 68 (96)
T PF08169_consen 8 LGKVVCVESTKKKTSWFPALVVSPSCNDDVTVKKDQCLVRSFKD-GKFYSVARKDVREFDID 68 (96)
T ss_dssp TTSEEEEE-SS-SS-EEEEEEE--SS-SS----TT-EEEEESSS---EEEE-TTTEE---ST
T ss_pred cCcEEEEEcCCCCCceeeEEEEcCCccceeeeccceEEEEEecc-CceEEEEhhhhhhcccc
Confidence 688888865333 3699999997532 1112245678888 666 99999999999998754
No 45
>PRK12442 translation initiation factor IF-1; Reviewed
Probab=20.78 E-value=2e+02 Score=26.36 Aligned_cols=31 Identities=29% Similarity=0.388 Sum_probs=23.5
Q ss_pred ceeEEEEEEecCCEEEEEEcCCceEEEEEEee
Q 002271 111 PMQGIVEQARDGSTLRVYLLPEFQFVQVFVAG 142 (944)
Q Consensus 111 ~~~a~Ve~V~DGdt~~v~l~~~~~~~~v~laG 142 (944)
.++|+|+.+.-++.|+|.|. ++..+.-+++|
T Consensus 8 e~~G~V~e~Lp~~~frV~Le-nG~~vla~isG 38 (87)
T PRK12442 8 ELDGIVDEVLPDSRFRVTLE-NGVEVGAYASG 38 (87)
T ss_pred EEEEEEEEECCCCEEEEEeC-CCCEEEEEecc
Confidence 56899999999999999875 45555555544
No 46
>cd04508 TUDOR Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal.
Probab=20.32 E-value=1.3e+02 Score=23.50 Aligned_cols=36 Identities=28% Similarity=0.392 Sum_probs=27.2
Q ss_pred cceeEEEEEEEEeCCEEEEecCCCCCCCCCcceEEEEeecc
Q 002271 301 DQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIR 341 (944)
Q Consensus 301 ~~~~~~~V~~V~~gD~i~v~~~~~~~~~~~~~~~v~L~~i~ 341 (944)
++.++|+|+++..++.+.|...+ ||+ ...|.+..|+
T Consensus 12 ~~wyra~V~~~~~~~~~~V~f~D--yG~---~~~v~~~~l~ 47 (48)
T cd04508 12 GKWYRAKITSILSDGKVEVFFVD--YGN---TEVVPLSDLR 47 (48)
T ss_pred CeEEEEEEEEECCCCcEEEEEEc--CCC---cEEEeHHHcC
Confidence 46789999999988888888744 454 5667776664
Done!