Query 002272
Match_columns 944
No_of_seqs 168 out of 296
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 19:35:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002272.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002272hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hpq_C ATG17, KLTH0D15642P; au 99.9 5.1E-24 1.7E-28 240.4 34.1 340 133-496 7-398 (413)
2 3plu_A Ubiquitin-like modifier 98.9 3.8E-09 1.3E-13 96.3 8.2 73 11-84 18-91 (93)
3 3phx_B Ubiquitin-like protein 98.8 2.1E-08 7.1E-13 87.8 8.8 73 13-86 3-76 (79)
4 3v6c_B Ubiquitin; structural g 98.7 4.4E-08 1.5E-12 88.3 8.7 76 11-87 14-90 (91)
5 4dwf_A HLA-B-associated transc 98.7 5.1E-08 1.7E-12 87.5 8.4 74 12-87 3-77 (90)
6 3dbh_I NEDD8; cell cycle, acti 98.7 5.3E-08 1.8E-12 86.6 8.2 76 10-86 8-84 (88)
7 4hcn_B Polyubiquitin, ubiquiti 98.7 4.7E-08 1.6E-12 89.6 8.1 78 9-87 17-95 (98)
8 3n3k_B Ubiquitin; hydrolase, p 98.6 5.7E-08 1.9E-12 85.7 7.9 74 13-87 2-76 (85)
9 2faz_A Ubiquitin-like containi 98.6 6.9E-08 2.3E-12 84.1 8.2 73 13-86 1-76 (78)
10 2bwf_A Ubiquitin-like protein 98.6 8.1E-08 2.8E-12 83.1 8.5 73 14-87 4-76 (77)
11 1uh6_A Ubiquitin-like 5; beta- 98.6 5.9E-08 2E-12 89.8 7.8 72 12-84 26-98 (100)
12 2kk8_A Uncharacterized protein 98.6 7.1E-08 2.4E-12 86.2 7.9 75 11-86 7-83 (84)
13 4fbj_B NEDD8; effector-HOST ta 98.6 7.7E-08 2.6E-12 86.4 8.1 71 15-86 1-72 (88)
14 4eew_A Large proline-rich prot 98.6 8.4E-08 2.9E-12 85.7 8.2 74 11-86 14-88 (88)
15 2hj8_A Interferon-induced 17 k 98.6 8E-08 2.7E-12 86.3 8.0 74 13-87 3-77 (88)
16 3mtn_B UBA80, ubcep1, ubiquiti 98.6 1E-07 3.4E-12 84.0 8.3 74 13-87 2-76 (85)
17 1ndd_A NEDD8, protein (ubiquit 98.6 1.4E-07 4.9E-12 81.0 8.9 72 15-87 1-73 (76)
18 1wx8_A Riken cDNA 4931431F19; 98.6 7.4E-08 2.5E-12 87.6 7.2 81 6-87 9-89 (96)
19 1uel_A HHR23B, UV excision rep 98.6 2.3E-07 7.8E-12 84.5 10.3 72 15-87 1-76 (95)
20 3m62_B UV excision repair prot 98.6 8.5E-08 2.9E-12 89.4 7.4 72 15-87 2-74 (106)
21 1sif_A Ubiquitin; hydrophobic 98.5 1.5E-07 5.1E-12 84.6 8.2 74 13-87 8-82 (88)
22 3a9j_A Ubiquitin; protein comp 98.5 2.2E-07 7.6E-12 79.8 8.7 71 15-86 1-72 (76)
23 2l7r_A Ubiquitin-like protein 98.5 1.4E-07 4.9E-12 85.7 7.6 75 10-86 15-89 (93)
24 3k9o_B Ubiquitin, UBB+1; E2-25 98.5 2E-07 6.9E-12 84.4 8.6 73 15-88 2-75 (96)
25 1wh3_A 59 kDa 2'-5'-oligoadeny 98.5 2.1E-07 7.1E-12 82.8 8.5 75 12-87 5-80 (87)
26 1ttn_A DC-UBP, dendritic cell- 98.5 1.6E-07 5.5E-12 87.3 8.0 75 12-87 21-96 (106)
27 2dzi_A Ubiquitin-like protein 98.5 2.8E-07 9.4E-12 80.5 8.7 74 12-86 5-79 (81)
28 2wyq_A HHR23A, UV excision rep 98.5 2.9E-07 9.8E-12 81.4 8.8 74 12-86 3-80 (85)
29 2uyz_B Small ubiquitin-related 98.5 1.9E-07 6.6E-12 81.6 7.6 73 14-87 3-76 (79)
30 2klc_A Ubiquilin-1; ubiquitin- 98.5 3E-07 1E-11 84.9 9.0 75 11-86 22-96 (101)
31 1wyw_B Ubiquitin-like protein 98.5 2.2E-07 7.4E-12 85.1 7.8 76 11-87 18-94 (97)
32 1v86_A DNA segment, CHR 7, way 98.5 2.5E-07 8.6E-12 84.5 8.2 80 6-87 9-88 (95)
33 1yx5_B Ubiquitin; proteasome, 98.5 2.9E-07 1E-11 84.1 8.7 72 15-87 1-73 (98)
34 1wx7_A Ubiquilin 3; ubiquitin- 98.5 5.7E-07 2E-11 83.5 10.6 82 6-88 9-90 (106)
35 1wy8_A NP95-like ring finger p 98.5 4.3E-07 1.5E-11 81.1 8.8 74 13-87 6-82 (89)
36 1j8c_A Ubiquitin-like protein 98.5 5.4E-07 1.9E-11 86.5 10.0 76 12-88 30-105 (125)
37 2lxa_A Ubiquitin-like protein 98.4 1.7E-07 6E-12 84.5 5.8 76 15-90 2-81 (87)
38 2kan_A Uncharacterized protein 98.4 4E-07 1.4E-11 83.0 8.3 76 11-87 12-88 (94)
39 3m63_B Ubiquitin domain-contai 98.4 2.3E-07 7.9E-12 85.8 6.1 72 14-86 28-99 (101)
40 2fnj_B Transcription elongatio 98.4 6.7E-07 2.3E-11 85.1 9.0 72 15-86 3-80 (118)
41 1v5t_A 8430435I17RIK protein; 98.4 5.3E-07 1.8E-11 81.4 7.2 72 12-84 5-80 (90)
42 3vdz_A Ubiquitin-40S ribosomal 98.4 8.2E-07 2.8E-11 83.3 8.7 74 13-87 34-108 (111)
43 3u30_A Ubiquitin, linear DI-ub 98.4 6.9E-07 2.4E-11 89.7 8.6 77 9-86 15-92 (172)
44 3b1l_X E3 ubiquitin-protein li 97.7 5E-08 1.7E-12 84.4 0.0 71 15-86 1-72 (76)
45 2kd0_A LRR repeats and ubiquit 98.3 1.1E-06 3.6E-11 78.7 8.4 71 14-85 12-82 (85)
46 2dzm_A FAS-associated factor 1 98.3 6.9E-07 2.4E-11 82.7 7.3 75 14-89 8-84 (100)
47 2kdi_A Ubiquitin, vacuolar pro 98.3 1.1E-06 3.7E-11 83.0 8.6 76 12-88 7-83 (114)
48 1yqb_A Ubiquilin 3; structural 98.3 9.2E-07 3.2E-11 81.5 7.8 76 11-87 19-94 (100)
49 4efo_A Serine/threonine-protei 98.3 9.1E-07 3.1E-11 80.8 7.4 74 14-87 14-89 (94)
50 4dbg_A Ranbp-type and C3HC4-ty 98.3 1.4E-06 4.7E-11 81.3 8.7 74 13-86 23-99 (105)
51 1we6_A Splicing factor, putati 98.3 1.3E-06 4.6E-11 81.7 8.7 76 11-87 24-104 (111)
52 1wgg_A Ubiquitin carboxyl-term 98.3 8E-07 2.7E-11 81.4 6.9 70 13-84 6-76 (96)
53 1wxv_A BAG-family molecular ch 98.3 1.5E-06 5.1E-11 78.4 8.3 73 13-86 6-84 (92)
54 3rt3_B Ubiquitin-like protein 98.3 1.5E-06 5.1E-11 85.9 9.0 75 12-87 79-154 (159)
55 3l0w_B Monoubiquitinated proli 98.3 1.8E-06 6E-11 87.1 9.2 73 15-88 1-74 (169)
56 1v5o_A 1700011N24RIK protein; 98.3 1.8E-06 6.1E-11 79.7 8.4 73 14-87 7-85 (102)
57 2ojr_A Ubiquitin; lanthide-bin 98.3 2.6E-06 9E-11 79.8 9.4 74 13-87 34-108 (111)
58 4a20_A Ubiquitin-like protein 98.3 1.4E-06 4.6E-11 80.4 7.1 74 11-85 16-94 (98)
59 4ajy_B Transcription elongatio 98.3 3.1E-06 1E-10 80.4 9.6 71 15-86 3-80 (118)
60 1wgd_A Homocysteine-responsive 98.2 3.2E-06 1.1E-10 76.5 8.4 74 13-87 6-86 (93)
61 3b08_A Polyubiquitin-C, ubiqui 98.2 3.4E-06 1.2E-10 82.0 8.7 72 15-87 1-73 (152)
62 3rt3_B Ubiquitin-like protein 98.2 4.4E-06 1.5E-10 82.5 9.3 71 15-86 3-76 (159)
63 3u5e_m 60S ribosomal protein L 98.2 2.3E-07 7.8E-12 89.3 0.0 72 15-87 1-73 (128)
64 3q3f_A Ribonuclease/ubiquitin 98.2 3.3E-06 1.1E-10 86.7 8.4 75 11-86 102-177 (189)
65 2kdb_A Homocysteine-responsive 98.1 2.6E-06 8.8E-11 78.7 6.5 72 11-83 20-98 (99)
66 1we7_A SF3A1 protein; structur 98.1 4.7E-06 1.6E-10 78.6 8.1 65 22-87 44-108 (115)
67 1x1m_A Ubiquitin-like protein 98.1 7.2E-06 2.5E-10 76.3 8.4 75 12-87 10-100 (107)
68 1wju_A NEDD8 ultimate buster-1 98.1 4E-06 1.4E-10 77.5 6.3 70 14-84 17-89 (100)
69 3u30_A Ubiquitin, linear DI-ub 98.1 5.3E-06 1.8E-10 83.2 7.7 74 12-86 94-168 (172)
70 3b08_A Polyubiquitin-C, ubiqui 98.1 9.1E-06 3.1E-10 79.0 9.1 75 12-87 74-149 (152)
71 3u5c_f 40S ribosomal protein S 98.1 5.5E-07 1.9E-11 89.4 0.0 74 15-89 1-75 (152)
72 1v2y_A 3300001G02RIK protein; 98.0 4.3E-06 1.5E-10 78.0 5.9 75 12-87 5-96 (105)
73 2kjr_A CG11242; UBL, ubiquitin 98.0 9.8E-06 3.3E-10 74.2 7.8 73 12-85 13-94 (95)
74 2kj6_A Tubulin folding cofacto 98.0 1.5E-05 5.1E-10 73.3 8.9 75 12-87 12-96 (97)
75 1wgh_A Ubiquitin-like 3, HCG-1 98.0 1.4E-05 4.6E-10 76.0 8.8 78 11-88 13-100 (116)
76 1v6e_A Cytoskeleton-associated 98.0 1.5E-05 5.1E-10 72.6 8.2 71 15-86 8-87 (95)
77 1wia_A Hypothetical ubiquitin- 98.0 1.6E-05 5.5E-10 72.0 8.1 72 12-87 5-78 (95)
78 2gow_A HCG-1 protein, ubiquiti 97.9 1.1E-05 3.9E-10 77.5 7.0 81 8-88 11-101 (125)
79 3ai5_A Yeast enhanced green fl 97.8 2.8E-05 9.7E-10 85.2 8.6 76 10-86 229-305 (307)
80 2dzj_A Synaptic glycoprotein S 97.8 2.6E-05 8.9E-10 70.3 6.3 69 14-83 10-85 (88)
81 1wf9_A NPL4 family protein; be 97.8 6.1E-05 2.1E-09 70.2 8.6 71 14-86 7-94 (107)
82 4b6w_A Tubulin-specific chaper 97.8 4.1E-05 1.4E-09 68.8 6.9 71 16-87 4-84 (86)
83 1se9_A Ubiquitin family; ubiqu 97.7 4.1E-05 1.4E-09 73.6 7.1 76 13-88 15-104 (126)
84 2daf_A FLJ35834 protein; hypot 97.7 6.5E-05 2.2E-09 71.1 7.8 77 10-87 11-89 (118)
85 1oqy_A HHR23A, UV excision rep 97.7 0.00012 4E-09 82.4 11.2 77 12-89 5-86 (368)
86 1t0y_A Tubulin folding cofacto 97.7 0.0001 3.4E-09 70.3 8.4 72 14-86 6-86 (122)
87 3qa8_A MGC80376 protein; kinas 97.7 0.0023 8E-08 77.2 22.0 312 14-414 312-637 (676)
88 2xzm_9 RPS31E; ribosome, trans 97.6 7E-06 2.4E-10 84.0 0.0 67 15-87 1-68 (189)
89 2io1_B Small ubiquitin-related 97.6 0.00017 5.9E-09 65.8 8.2 78 11-89 4-82 (94)
90 2kzr_A Ubiquitin thioesterase 97.5 0.0001 3.4E-09 65.8 6.0 70 15-86 1-77 (86)
91 3shq_A UBLCP1; phosphatase, hy 97.5 0.0001 3.6E-09 81.3 6.8 71 13-84 4-77 (320)
92 1wm3_A Ubiquitin-like protein 97.4 0.00047 1.6E-08 59.6 8.3 69 15-84 2-71 (72)
93 2eke_C Ubiquitin-like protein 97.4 0.00058 2E-08 63.8 9.1 76 11-87 28-103 (106)
94 2io0_B Small ubiquitin-related 97.3 0.0006 2.1E-08 61.9 8.7 76 12-88 3-79 (91)
95 3a4r_A Nfatc2-interacting prot 97.3 0.00074 2.5E-08 59.5 8.6 72 12-84 5-78 (79)
96 2k8h_A Small ubiquitin protein 97.2 0.00084 2.9E-08 63.1 8.6 74 13-87 25-99 (110)
97 2d07_B Ubiquitin-like protein 97.2 0.00086 2.9E-08 61.0 8.5 76 11-87 14-90 (93)
98 1wz0_A Ubiquitin-like protein 97.1 0.0012 4.1E-08 61.4 8.6 76 12-88 22-98 (104)
99 1wjn_A Tubulin-folding protein 96.5 0.0058 2E-07 55.5 7.4 71 15-86 10-92 (97)
100 3kyd_D Small ubiquitin-related 95.9 0.026 8.9E-07 53.3 8.8 75 12-87 38-113 (115)
101 3pge_A SUMO-modified prolifera 95.7 0.025 8.5E-07 58.4 8.6 77 12-89 27-103 (200)
102 3tix_A Ubiquitin-like protein 95.1 0.036 1.2E-06 56.7 7.1 77 12-89 55-131 (207)
103 3v7o_A Minor nucleoprotein VP3 92.4 0.024 8.1E-07 58.7 0.0 76 12-88 19-94 (227)
104 2jxx_A Nfatc2-interacting prot 92.0 0.51 1.7E-05 43.2 8.3 78 6-84 17-96 (97)
105 2pjh_A Protein NPL4, nuclear p 90.0 0.44 1.5E-05 41.9 5.7 69 15-84 5-78 (80)
106 2l76_A Nfatc2-interacting prot 88.1 1.6 5.6E-05 39.7 8.1 74 11-85 18-91 (95)
107 4eut_A Serine/threonine-protei 88.1 1.1 3.6E-05 49.7 8.5 74 15-88 313-388 (396)
108 3uf8_A Ubiquitin-like protein 87.5 1.2 4.3E-05 45.8 8.0 78 11-89 18-95 (209)
109 4hpq_C ATG17, KLTH0D15642P; au 86.6 49 0.0017 37.6 31.7 17 468-484 343-359 (413)
110 3ix6_A TS, tsase, thymidylate 81.5 0.29 1E-05 54.6 0.0 74 13-87 20-93 (360)
111 4da1_A Protein phosphatase 1K, 73.4 0.69 2.4E-05 51.9 0.0 76 13-89 29-104 (389)
112 3goe_A DNA repair protein RAD6 72.0 14 0.00049 32.5 7.9 60 21-81 17-77 (82)
113 3ghg_A Fibrinogen alpha chain; 70.9 99 0.0034 35.9 16.6 29 173-201 61-89 (562)
114 1wgy_A RAP guanine nucleotide 70.9 28 0.00094 32.2 10.0 75 14-92 11-92 (104)
115 4g1a_A AQ-C16C19 peptide; heli 66.6 3.5 0.00012 29.1 2.3 26 639-664 4-29 (32)
116 2dzk_A UBX domain-containing p 65.8 29 0.001 31.9 9.3 73 2-75 2-80 (109)
117 3ghg_A Fibrinogen alpha chain; 65.0 63 0.0022 37.5 13.5 28 388-415 128-155 (562)
118 1nkp_B MAX protein, MYC proto- 62.7 26 0.00088 30.6 7.9 65 588-666 14-78 (83)
119 3na7_A HP0958; flagellar bioge 61.9 35 0.0012 35.9 10.3 109 820-931 88-196 (256)
120 2dhz_A RAP guanine nucleotide 60.6 32 0.0011 32.6 8.5 75 15-93 12-99 (120)
121 2daj_A KIAA0977 protein, COBL- 60.2 35 0.0012 30.5 8.1 64 21-88 18-84 (91)
122 2al3_A TUG long isoform; TUG U 59.4 21 0.0007 32.2 6.7 66 11-76 6-72 (90)
123 3ljm_A Coil Ser L9C; de novo d 58.6 9.9 0.00034 26.7 3.4 23 645-667 4-26 (31)
124 3qx1_A FAS-associated factor 1 56.8 39 0.0013 29.3 8.0 70 12-83 5-80 (84)
125 2kc2_A Talin-1, F1; FERM, adhe 55.4 18 0.00063 34.6 6.0 33 20-52 18-50 (128)
126 1i6z_A BAG-family molecular ch 55.0 1.5E+02 0.0052 28.5 12.4 51 180-230 39-92 (135)
127 4dnd_A Syntaxin-10, SYN10; str 53.5 1.1E+02 0.0037 29.2 11.1 39 424-462 90-128 (130)
128 3nmd_A CGMP dependent protein 53.5 31 0.0011 29.9 6.4 59 812-870 9-67 (72)
129 1sb0_B Protein C-MYB; CREB-bin 49.7 14 0.00049 25.4 3.0 20 655-674 2-23 (26)
130 1deq_A Fibrinogen (alpha chain 48.7 2.1E+02 0.0072 32.0 13.8 45 265-321 116-160 (390)
131 4ath_A MITF, microphthalmia-as 48.0 25 0.00085 31.3 5.2 40 615-665 30-79 (83)
132 1vd2_A Protein kinase C, IOTA 46.0 51 0.0018 29.5 7.0 49 11-59 3-51 (89)
133 1kd8_A GABH AIV, GCN4 acid bas 44.7 35 0.0012 25.5 4.6 32 839-870 4-35 (36)
134 2v66_B Nuclear distribution pr 41.9 43 0.0015 31.3 6.1 37 834-870 75-111 (111)
135 3gwk_C SAG1039, putative uncha 41.1 1.8E+02 0.006 25.2 11.9 36 241-276 8-43 (98)
136 1d7m_A Cortexillin I; coiled-c 40.7 35 0.0012 30.6 4.9 36 633-668 20-58 (101)
137 3nmd_A CGMP dependent protein 36.9 55 0.0019 28.3 5.4 38 624-661 22-59 (72)
138 3uun_A Dystrophin; triple heli 36.9 1.3E+02 0.0044 26.6 8.5 98 821-922 1-101 (119)
139 2r2v_A GCN4 leucine zipper; co 33.9 68 0.0023 23.8 4.6 31 838-868 3-33 (34)
140 2xs1_A Programmed cell death 6 32.3 7.2E+02 0.025 29.7 28.7 70 243-312 498-570 (704)
141 1nlw_A MAD protein, MAX dimeri 31.9 2E+02 0.0069 25.0 8.5 66 588-666 13-78 (80)
142 3m48_A General control protein 31.4 57 0.002 24.0 3.9 30 839-868 3-32 (33)
143 1wj4_A KIAA0794 protein; UBX d 31.3 1.5E+02 0.005 27.9 8.1 62 13-75 42-109 (124)
144 3zbh_A ESXA; unknown function, 30.9 2.5E+02 0.0086 24.0 12.0 36 241-276 9-44 (99)
145 1kd8_B GABH BLL, GCN4 acid bas 30.3 86 0.0029 23.5 4.7 31 840-870 5-35 (36)
146 3tnu_B Keratin, type II cytosk 29.3 2.6E+02 0.009 26.1 9.6 62 161-222 35-96 (129)
147 3uul_A Utrophin; spectrin repe 28.8 1.4E+02 0.0048 26.4 7.3 96 821-920 1-99 (118)
148 2d9d_A BAG family molecular ch 28.4 72 0.0025 28.2 4.8 43 844-886 11-67 (89)
149 2b9c_A Striated-muscle alpha t 28.4 1.7E+02 0.0058 28.5 8.1 66 822-887 52-117 (147)
150 4ioe_A Secreted protein ESXB; 27.9 2.8E+02 0.0095 23.5 10.7 34 241-274 9-42 (93)
151 1r4t_A Exoenzyme S; EXOS, GAP, 27.8 46 0.0016 32.4 3.8 27 835-861 108-134 (153)
152 3bas_A Myosin heavy chain, str 27.4 3E+02 0.01 24.3 9.0 66 820-885 19-84 (89)
153 3brv_A Inhibitor of nuclear fa 26.6 37 0.0012 27.2 2.5 30 860-890 6-35 (48)
154 1nkp_A C-MYC, MYC proto-oncoge 26.3 2.5E+02 0.0084 24.8 8.2 66 588-666 18-83 (88)
155 3tnu_A Keratin, type I cytoske 26.2 2.4E+02 0.0083 26.5 8.7 61 162-222 38-98 (131)
156 3kdq_A Uncharacterized conserv 24.9 36 0.0012 33.5 2.7 26 823-848 122-147 (154)
157 3c3f_A Alpha/beta peptide with 24.4 1.1E+02 0.0036 22.7 4.3 31 838-868 3-33 (34)
158 2lw1_A ABC transporter ATP-bin 24.1 71 0.0024 28.2 4.2 31 638-668 18-48 (89)
159 3obv_E Protein diaphanous homo 23.9 8.3E+02 0.028 27.7 18.2 31 421-451 363-393 (457)
160 2avr_X Adhesion A; antiparalle 23.0 4.5E+02 0.015 24.8 9.5 58 158-215 37-103 (119)
161 3vjf_A WA20; protein design, d 22.2 3.9E+02 0.013 23.2 11.8 77 245-321 4-85 (102)
162 1zxa_A CGMP-dependent protein 21.6 83 0.0028 26.8 3.9 45 613-665 4-48 (67)
163 1deq_A Fibrinogen (alpha chain 20.9 9E+02 0.031 27.0 16.8 14 258-271 144-157 (390)
164 2cr5_A Reproduction 8; UBX dom 20.9 1.9E+02 0.0067 26.2 6.7 71 13-85 22-97 (109)
165 2vxx_A Starvation induced DNA 20.4 5.7E+02 0.019 25.1 10.6 51 176-226 43-93 (192)
166 2ykt_A Brain-specific angiogen 20.2 6.2E+02 0.021 26.5 11.3 93 127-219 29-139 (253)
No 1
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=99.93 E-value=5.1e-24 Score=240.40 Aligned_cols=340 Identities=13% Similarity=0.149 Sum_probs=221.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH---HHHHHHHHHH
Q 002272 133 PSYERQFRYHYHRGHAIYIRTQAKIE-------MCERLLREQKVQERAVEVGRGNLEQYY--RVINQ---NYNDFMKRYS 200 (944)
Q Consensus 133 ~sye~lf~~~l~wA~al~~da~~~~e-------~ce~Lv~Ei~vq~raL~aAvaNLe~~~--~~lek---~f~~f~~~f~ 200 (944)
..|-+.-+..+.+|+.+++.|+.... .+...++.++++..|+.-....|...+ +.+.. .+++....|.
T Consensus 7 ~~~~~~A~~tL~~AQ~lC~~A~~~l~~t~~~L~~~~~~~~k~~Fl~~~l~~Q~~~L~~~ilr~~i~~~li~~e~~~~~f~ 86 (413)
T 4hpq_C 7 EKLLENSRKFLTGAKLICQESNDHLTTTKLRIREWQKFQSKLHFVLDCIQQQTKFLSEILLREGIGRNLIEEEWSQTVLV 86 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Confidence 34667778888899999888876443 466666777777788777777776332 34444 4455556677
Q ss_pred HHHHHHHHHHhhHHHHHHHhhCCCCCcccccccccccccccChhH---HHHHHHHH-------HHHHHHHHHHHHHH---
Q 002272 201 QQQRVHSDLLANFGRDIEKLRSVKLHPSLQTATCKCLLDFVKEEH---LRKSAETC-------SSSHRQFENKVSQF--- 267 (944)
Q Consensus 201 ~ll~~~~~LL~~we~dLe~Lr~IpVhpaL~~ee~kTL~DfVd~e~---Lrk~ae~C-------~~s~~~f~~Kl~~L--- 267 (944)
++.+.++...++++..|++|++|++++.| ++.++|+||||.++ |++....| .....+|++-+.++
T Consensus 87 ~lv~~l~~~~~~L~~~~~~Lr~T~v~~~~--~~~k~L~DFIs~~sv~~L~~kLke~p~I~~~i~~i~~~y~~~l~~~~~~ 164 (413)
T 4hpq_C 87 RLVNDMKFWQNEITKMMNKLDNITNEIDQ--QHNSKLGDFISRDSSHILDSKLNEIPTIRKQVENITRQYQTMLAKVQSQ 164 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCCCCSS--SCCCTTTTSSCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcccc--CCCCcHHHHcCHhhHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 88888889999999999999999999999 33399999999643 34444443 55666777777776
Q ss_pred --HHHHHHHHHHHHHHHhhccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhhccccccCCCCCCccccc
Q 002272 268 --KQIFDDVKRRVEELLNTRASLPIKNLEMMIKEHQRFINEQKSIMQSLSKDVSTVKKLVDDCLSCQLSSSLRPHDAVSA 345 (944)
Q Consensus 268 --k~~i~~Ik~~vd~L~~~~~~~s~~~Le~~i~e~~~Ll~eq~siaQ~LssD~e~v~~l~D~~v~~~lsss~~~~d~vS~ 345 (944)
+..+..|+..+...+...+..+..-......+...+- ..||+.|.+..+|+ |.|+... +
T Consensus 165 l~~~~L~~L~~~~~~~~~~~~~~~~~~~~~ll~el~~le---~elA~~L~SLT~Hy----DqC~~l~-----------~- 225 (413)
T 4hpq_C 165 LVESRMKGLRDEFSSKFGDQCRENLKLNEEFTNEADQLE---QELADFLKSFTDHF----DKCSALS-----------S- 225 (413)
T ss_dssp HHHHHHHHHHHHHC--------------CHHHHHHHHHH---HHHHHHHHHHHHHH----HHHHHTT-----------T-
T ss_pred HHHhhHHHHHHHHHhccCCCCccccchhhhhhHHHHHHH---HHHHHHHHHHHHHH----HHHHHHh-----------c-
Confidence 4455556665554444322222111112222333332 34555555555554 6665321 1
Q ss_pred cCcchhhhhccchHhHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHH---HHHHHHH
Q 002272 346 LGPMYDVHDKSHLPRMQACDRSISKLLDFCQDK---------------------KNEMNVFVHNYMQKIT---YVSYVIK 401 (944)
Q Consensus 346 Ls~m~e~H~kelLP~L~~~~~eL~d~l~~~~~~---------------------KneL~~~~~~~Lr~Is---~IQs~I~ 401 (944)
.++...++.+++..|...+.++.+++..+... +..+...+-..+..+. ..-..+.
T Consensus 226 -~~~s~~e~~elleVv~~Da~EL~~V~~eL~~~~~~i~~~~~~~~~~l~~~~~~~~~l~~~~~~l~~~~~~~~e~l~i~~ 304 (413)
T 4hpq_C 226 -RSVSPEDAQNLFEIVERDDKDLAAINSLLQDAAIDVASFVRKVNMLLDERDADKAKMQATLSKLLTELRKHEEYISVFE 304 (413)
T ss_dssp -TSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cCCChHhHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 33444445555555555555554444444332 2222211111111111 1222334
Q ss_pred HHhhhHHHHHHHHHhhhhHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002272 402 DAKLQFPVFREAMVRQDDIFADLKLV-RGIGPAYRACLAEVVRRKASMKLYMGMAGQLAERLATKREVEVRRREEFLKAN 480 (944)
Q Consensus 402 evk~~L~~l~e~L~~~~~~F~~L~~v-~~lP~aYga~LiEVvRRRew~~k~~~~a~~lAEeLa~lrEeE~krRe~F~k~f 480 (944)
++...|..|++.+..+.+.|..|..+ .++..+|.++|+||.|||.+.+++.+.+++++++|++++++|.++|+.|+.++
T Consensus 305 ~i~e~l~~fk~~~~~~~~~~~~L~~~Y~~f~~aY~~lL~Ev~RRr~~~~~~~~i~~~~~~~L~~l~e~d~~~Re~F~~~~ 384 (413)
T 4hpq_C 305 GISALIQKFKASCLEDIRQTRNLLDFYANFERSYHNLLKEVKRRKETAAKLSQILKSCETQLEQINTADLRERQMFLLEN 384 (413)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555667778887887889999965 58999999999999999999999999999999999999999999999999999
Q ss_pred hccCChhhhccCCCCC
Q 002272 481 SVYIPRDILGSMGLYD 496 (944)
Q Consensus 481 G~~LP~dL~~~~GL~d 496 (944)
|+|||.||| ||+-|
T Consensus 385 G~yLP~diw--pg~id 398 (413)
T 4hpq_C 385 GNYLPETIW--PDEIG 398 (413)
T ss_dssp SSSSCGGGS--TTTSS
T ss_pred cccCChhhC--CCccc
Confidence 999999999 68644
No 2
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=98.87 E-value=3.8e-09 Score=96.31 Aligned_cols=73 Identities=14% Similarity=0.211 Sum_probs=67.6
Q ss_pred cCCeEEEEEe-cCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEE
Q 002272 11 HEGKLLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIF 84 (944)
Q Consensus 11 ~~~~m~V~~A-~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVf 84 (944)
.+.-|+||+. .+|+++.+++.+.+||.+||+.|+.+.|||++.|+|+++|..|++..+|++|++. +..+|.+|
T Consensus 18 ~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~-dgstLhL~ 91 (93)
T 3plu_A 18 GSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVH-DQTNLELY 91 (93)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTGGGTCC-TTCEEEEE
T ss_pred CCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCC-CCCEEEEE
Confidence 4557899998 7999999999999999999999999999999999999999999999999999998 78889888
No 3
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=98.76 E-value=2.1e-08 Score=87.78 Aligned_cols=73 Identities=18% Similarity=0.178 Sum_probs=68.5
Q ss_pred CeEEEEEe-cCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEEec
Q 002272 13 GKLLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNK 86 (944)
Q Consensus 13 ~~m~V~~A-~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVfdR 86 (944)
+.|+|++. .+|+++.+++.+..||.+||+.|+..+|||++.|.|++.|..|++..+|.+|++. +..+|+|.-|
T Consensus 3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~-~~~~l~l~~r 76 (79)
T 3phx_B 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLK-PLSTVFMNLR 76 (79)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCC-TTCEEEEEEC
T ss_pred CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcHHHCCCC-CCCEEEEEEe
Confidence 57999998 5999999999999999999999999999999999999999999999999999998 7889999876
No 4
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=98.68 E-value=4.4e-08 Score=88.31 Aligned_cols=76 Identities=20% Similarity=0.376 Sum_probs=70.1
Q ss_pred cCCeEEEEEe-cCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEEecc
Q 002272 11 HEGKLLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKL 87 (944)
Q Consensus 11 ~~~~m~V~~A-~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVfdRr 87 (944)
.+..|+|++. .+|+++.+++.+..||.+||..|+..+|||++.|.|++.|..|++..+|.+||+. +..+|+|.-|-
T Consensus 14 ~~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~-~g~~i~l~~rl 90 (91)
T 3v6c_B 14 PRGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ-KESTLHLVLRL 90 (91)
T ss_dssp CCCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBTGGGTCC-TTCEEEEECCC
T ss_pred CCCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcHHHCCCC-CCCEEEEEEec
Confidence 4567999998 7999999999999999999999999999999999999999999999999999997 78899998663
No 5
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=98.66 E-value=5.1e-08 Score=87.47 Aligned_cols=74 Identities=15% Similarity=0.202 Sum_probs=68.5
Q ss_pred CCeEEEEEe-cCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEEecc
Q 002272 12 EGKLLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKL 87 (944)
Q Consensus 12 ~~~m~V~~A-~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVfdRr 87 (944)
+..|+|++. .+|+++.+++.+..||.+||..|+..+|||++.|.|++.|..|++..+|.+|++ +..+|+|..|.
T Consensus 3 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i--~g~~i~l~~~~ 77 (90)
T 4dwf_A 3 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV--GGKVIHLVERA 77 (90)
T ss_dssp CCEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC--TTEEEEEEECC
T ss_pred CcEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHHHcCC--CCcEEEEEecC
Confidence 457999998 589999999999999999999999999999999999999999999999999999 47899999873
No 6
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=98.65 E-value=5.3e-08 Score=86.58 Aligned_cols=76 Identities=17% Similarity=0.330 Sum_probs=70.2
Q ss_pred ccCCeEEEEEe-cCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEEec
Q 002272 10 VHEGKLLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNK 86 (944)
Q Consensus 10 ~~~~~m~V~~A-~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVfdR 86 (944)
..+..|+|++. .+|.++.+++.+..||.+||..|+..+|||++.|.|++.|..|++..+|.+|++. +..+|||+-|
T Consensus 8 ~~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~-~~~~i~l~~r 84 (88)
T 3dbh_I 8 GSGGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKIL-GGSVLHLVLR 84 (88)
T ss_dssp SCCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBGGGGTCC-TTCEEEECCC
T ss_pred CCCCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCC-CCCEEEEEEe
Confidence 35668999998 6999999999999999999999999999999999999999999999999999998 7889999865
No 7
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=98.65 E-value=4.7e-08 Score=89.60 Aligned_cols=78 Identities=17% Similarity=0.345 Sum_probs=68.5
Q ss_pred cccCCeEEEEEe-cCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEEecc
Q 002272 9 LVHEGKLLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKL 87 (944)
Q Consensus 9 ~~~~~~m~V~~A-~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVfdRr 87 (944)
...+..|+|++. .+|+++.+++.+..+|.+||..|+..+|||++.|.|++.|..|++..+|.+|++. +..+|+|+-|-
T Consensus 17 ~~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~-~g~~i~l~~rl 95 (98)
T 4hcn_B 17 YFQGRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ-KESTLHLVLRL 95 (98)
T ss_dssp -----CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBSGGGTCC-TTEEEEEECBC
T ss_pred CCCCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHCCCC-CCCEEEEEEec
Confidence 344557999998 7999999999999999999999999999999999999999999999999999997 78899998763
No 8
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=98.64 E-value=5.7e-08 Score=85.72 Aligned_cols=74 Identities=20% Similarity=0.365 Sum_probs=67.6
Q ss_pred CeEEEEEe-cCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEEecc
Q 002272 13 GKLLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKL 87 (944)
Q Consensus 13 ~~m~V~~A-~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVfdRr 87 (944)
..|+|++. .+|.++.+++.+..||.+||+.|+..++||++.|.|++.|..|++..+|.+|++. +..+|+|.-|-
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~-~~~~i~l~~rl 76 (85)
T 3n3k_B 2 SHMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIH-NHSALYLLLKL 76 (85)
T ss_dssp --CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTTCBTTTTTCC-TTCEEEEEECC
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCCCCHHHCCCC-CCCEEEEEEec
Confidence 46999998 6999999999999999999999999999999999999999999999999999998 78899998763
No 9
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=98.63 E-value=6.9e-08 Score=84.12 Aligned_cols=73 Identities=15% Similarity=0.238 Sum_probs=66.3
Q ss_pred CeEEEEEe-cCCceE-Eec-CCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEEec
Q 002272 13 GKLLVHIS-ENGHSF-ELD-CNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNK 86 (944)
Q Consensus 13 ~~m~V~~A-~tG~sl-~ld-~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVfdR 86 (944)
+.|+|++. .+|+++ .++ +.+..||.+||..|+..+|||++.|.|++.|..|++..+|.+|++. +..+|+|.-|
T Consensus 1 g~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~-~g~~i~l~~r 76 (78)
T 2faz_A 1 GSMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVR-LNDTIQLLVR 76 (78)
T ss_dssp -CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCC-TTCEEEEEEC
T ss_pred CcEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCC-CCCEEEEEEe
Confidence 46999997 689986 898 9999999999999999999999999999999999999999999998 7889998865
No 10
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=98.63 E-value=8.1e-08 Score=83.11 Aligned_cols=73 Identities=21% Similarity=0.339 Sum_probs=67.6
Q ss_pred eEEEEEecCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEEecc
Q 002272 14 KLLVHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKL 87 (944)
Q Consensus 14 ~m~V~~A~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVfdRr 87 (944)
.|+|++..+|+++.+++.+..||.+||..|+..+|||++.|.|++.|..|.+..+|.+||+. +..+|+|..+.
T Consensus 4 ~m~i~vk~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~-~g~~i~l~~~~ 76 (77)
T 2bwf_A 4 SLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQ-DGHSVHLVKSQ 76 (77)
T ss_dssp EEEEEEEETTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCC-TTCEEEEEECC
T ss_pred EEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCC-CCCEEEEEEcC
Confidence 48899987999999999999999999999999999999999999999999999999999998 77899998764
No 11
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.62 E-value=5.9e-08 Score=89.81 Aligned_cols=72 Identities=14% Similarity=0.305 Sum_probs=66.1
Q ss_pred CCeEEEEEe-cCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEE
Q 002272 12 EGKLLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIF 84 (944)
Q Consensus 12 ~~~m~V~~A-~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVf 84 (944)
..-|+|++. .+|+++.+++.+.+||.+||+.|+.++|||++.|.|+++|..|++..+|.+|++. +..+|+|+
T Consensus 26 ~~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~-~gstlhL~ 98 (100)
T 1uh6_A 26 ATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIH-DGMNLELY 98 (100)
T ss_dssp CCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBHHHHTCC-TTEEEEEE
T ss_pred CCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCHHHcCCC-CCCEEEEE
Confidence 335999997 5799999999999999999999999999999999999999999999999999998 67788876
No 12
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=98.61 E-value=7.1e-08 Score=86.23 Aligned_cols=75 Identities=17% Similarity=0.247 Sum_probs=68.4
Q ss_pred cCCeEEEEEe-cCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCcc-ccccchhccccCCCCCceEEEEec
Q 002272 11 HEGKLLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMK-LEPQKLLSAYRLPSDDKEVFIFNK 86 (944)
Q Consensus 11 ~~~~m~V~~A-~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~k-L~~~~~L~~y~l~td~~eIyVfdR 86 (944)
.-..|+||+. .+|+++.+++.+..||.+||+.|+..+|||++.|.|++.|.. |++..+|.+|++. +..+|+|.-+
T Consensus 7 ~~~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~-~gs~i~lv~~ 83 (84)
T 2kk8_A 7 HHSHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQCQIV-PTSDIQLEVS 83 (84)
T ss_dssp CCCCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCC-TTSCEEEEEC
T ss_pred ccCceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCcCCHHHcCCC-CCCEEEEEEc
Confidence 3467999997 799999999999999999999999999999999999999998 9999999999998 7788888653
No 13
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=98.61 E-value=7.7e-08 Score=86.44 Aligned_cols=71 Identities=17% Similarity=0.327 Sum_probs=66.9
Q ss_pred EEEEEe-cCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEEec
Q 002272 15 LLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNK 86 (944)
Q Consensus 15 m~V~~A-~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVfdR 86 (944)
|+|++. .+|+++.+++.+..||.+||..|+..+|||++.|.|++.|..|++..+|.+|++. +..+|+|.-|
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~-~g~~l~l~~r 72 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKIL-GGSVLHLVLA 72 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTTTTTCC-TTCEEEEECB
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcHHHcCCC-CCCEEEEEEE
Confidence 789997 7999999999999999999999999999999999999999999999999999998 7889999876
No 14
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=98.61 E-value=8.4e-08 Score=85.69 Aligned_cols=74 Identities=15% Similarity=0.209 Sum_probs=67.2
Q ss_pred cCCeEEEEEe-cCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEEec
Q 002272 11 HEGKLLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNK 86 (944)
Q Consensus 11 ~~~~m~V~~A-~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVfdR 86 (944)
.+..|+|++. .+|+++.+++.+..||.+||..|+..+|||++.|.|++.|..|++..+|.+|++ +..+|+|.-|
T Consensus 14 ~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i--~g~~i~lv~R 88 (88)
T 4eew_A 14 EPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQEYNV--GGKVIHLVER 88 (88)
T ss_dssp -CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTC--TTEEEEEEEC
T ss_pred CCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcHHHcCC--CCcEEEEEEC
Confidence 4567999998 489999999999999999999999999999999999999999999999999999 3789998764
No 15
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=98.60 E-value=8e-08 Score=86.27 Aligned_cols=74 Identities=19% Similarity=0.194 Sum_probs=67.8
Q ss_pred CeEEEEEe-cCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEEecc
Q 002272 13 GKLLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKL 87 (944)
Q Consensus 13 ~~m~V~~A-~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVfdRr 87 (944)
+.|+|++. .+|+++.+++.+..||.+||..|+..+|||++.|.|++.|..|++..+|.+|++. +..+|+|..+.
T Consensus 3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~-~g~~i~l~~~~ 77 (88)
T 2hj8_A 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLK-PLSTVFMNLRL 77 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCS-TTCEEEEEEC-
T ss_pred ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcHHHcCCC-CCCEEEEEEEc
Confidence 46999998 5899999999999999999999999999999999999999999999999999998 78899998764
No 16
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=98.59 E-value=1e-07 Score=83.98 Aligned_cols=74 Identities=20% Similarity=0.377 Sum_probs=68.0
Q ss_pred CeEEEEEe-cCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEEecc
Q 002272 13 GKLLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKL 87 (944)
Q Consensus 13 ~~m~V~~A-~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVfdRr 87 (944)
..|+|++. .+|.++.+++.+..||.+||+.|+..++||++.|.|++.|..|.+..+|.+|++. +..+|+|+-|.
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~-~~~~l~l~~r~ 76 (85)
T 3mtn_B 2 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ-KWSTLFLLLRL 76 (85)
T ss_dssp -CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCC-TTCEEEEECCC
T ss_pred CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCCCCHHHcCCC-CCCEEEEEEEC
Confidence 56999998 5899999999999999999999999999999999999999999999999999997 78899998763
No 17
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=98.59 E-value=1.4e-07 Score=80.97 Aligned_cols=72 Identities=18% Similarity=0.341 Sum_probs=66.3
Q ss_pred EEEEEe-cCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEEecc
Q 002272 15 LLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKL 87 (944)
Q Consensus 15 m~V~~A-~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVfdRr 87 (944)
|+|++. .+|+++.+++.+..||.+||..|+..+|||++.|.|++.|..|++..+|.+|++. +..+|+|.-|.
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~-~g~~i~l~~~~ 73 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTAADYKIL-GGSVLHLVLAL 73 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBGGGGTCC-TTCEEEEEECC
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHcCCC-CCCEEEEEEeC
Confidence 789997 5899999999999999999999999999999999999999999999999999998 77889998653
No 18
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.58 E-value=7.4e-08 Score=87.64 Aligned_cols=81 Identities=17% Similarity=0.128 Sum_probs=71.6
Q ss_pred ccccccCCeEEEEEecCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEEe
Q 002272 6 TEVLVHEGKLLVHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFN 85 (944)
Q Consensus 6 ~~~~~~~~~m~V~~A~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVfd 85 (944)
++....+..|+|++...|+++.+++....+|.+||..|+..+|||++.|.|++.|..|++..+|.+|++. +..+|+|+.
T Consensus 9 ~~~~~~~~~m~i~Vk~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~-~g~~i~l~~ 87 (96)
T 1wx8_A 9 SGREPSSRIIRVSVKTPQDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDILSQRGIL-DGSTVHVVV 87 (96)
T ss_dssp CCSCCCSCEEEEEEECSSSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTTSCHHHHTCC-TTEEEECCB
T ss_pred cCCCCCCCcEEEEEEECCeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCcCCHHHCCCC-CCCEEEEEE
Confidence 4444455679999987799999999999999999999999999999999999999999999999999998 778899877
Q ss_pred cc
Q 002272 86 KL 87 (944)
Q Consensus 86 Rr 87 (944)
|.
T Consensus 88 ~~ 89 (96)
T 1wx8_A 88 RS 89 (96)
T ss_dssp CC
T ss_pred eC
Confidence 54
No 19
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.57 E-value=2.3e-07 Score=84.52 Aligned_cols=72 Identities=18% Similarity=0.296 Sum_probs=66.4
Q ss_pred EEEEEe-cCCceEEecCCCCCCHHHHHHHHHHH---hCCCCCCeEEeecCccccccchhccccCCCCCceEEEEecc
Q 002272 15 LLVHIS-ENGHSFELDCNENSPVEAVMRFIESA---AGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKL 87 (944)
Q Consensus 15 m~V~~A-~tG~sl~ld~~~f~sVe~LK~~Ia~~---~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVfdRr 87 (944)
|+|++. .+|+.+.+++.+..||.+||..|+.. +|||++.|.|++.|..|++..+|.+||+. +..+|+|..+.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~-~g~~i~l~~~~ 76 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKID-EKNFVVVMVTK 76 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBGGGGTCC-SSSEEEEEESS
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcHHHCCCC-CCCEEEEEEeC
Confidence 788997 58999999999999999999999999 79999999999999999999999999998 78899998764
No 20
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.57 E-value=8.5e-08 Score=89.35 Aligned_cols=72 Identities=11% Similarity=0.104 Sum_probs=66.5
Q ss_pred EEEEEe-cCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEEecc
Q 002272 15 LLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKL 87 (944)
Q Consensus 15 m~V~~A-~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVfdRr 87 (944)
|+|++. .+|+++.+++.+..+|.+||..|+..+|||++.|.|++.|..|++..+|.+||+. +..+|+|.-+.
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~-~g~~i~lv~~~ 74 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTVSECGLK-DGDQVVFMVSQ 74 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBTTTTTCC-TTCEEEEECCC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCHHHcCCC-CCCEEEEEEcC
Confidence 788998 5999999999999999999999999999999999999999999999999999998 78899999763
No 21
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=98.55 E-value=1.5e-07 Score=84.56 Aligned_cols=74 Identities=20% Similarity=0.367 Sum_probs=66.1
Q ss_pred CeEEEEEe-cCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEEecc
Q 002272 13 GKLLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKL 87 (944)
Q Consensus 13 ~~m~V~~A-~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVfdRr 87 (944)
.-|+|++. .+|+++.+++.+..||.+||..|+..+|||++.|.|++.|..|++..+|.+|++. +..+|+|+-|.
T Consensus 8 ~~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~-~g~~i~l~~r~ 82 (88)
T 1sif_A 8 QGLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ-KESTLHLVLRL 82 (88)
T ss_dssp --CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBSGGGTCC-TTCEEEEEC--
T ss_pred cceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcHHHcCCC-CCCEEEEEEeC
Confidence 35899997 7999999999999999999999999999999999999999999999999999998 77899998653
No 22
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=98.54 E-value=2.2e-07 Score=79.80 Aligned_cols=71 Identities=18% Similarity=0.360 Sum_probs=65.6
Q ss_pred EEEEEe-cCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEEec
Q 002272 15 LLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNK 86 (944)
Q Consensus 15 m~V~~A-~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVfdR 86 (944)
|+|++. .+|+++.+++.+..||.+||..|+..+|||++.|.|++.|..|.+..+|.+|++. +..+|+|.-|
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~-~g~~i~l~~~ 72 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ-RESTLHLVLR 72 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCC-TTCEEEEEEC
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcHHHcCCC-CCCEEEEEEe
Confidence 788987 5899999999999999999999999999999999999999999999999999998 6788998865
No 23
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=98.53 E-value=1.4e-07 Score=85.66 Aligned_cols=75 Identities=17% Similarity=0.244 Sum_probs=66.0
Q ss_pred ccCCeEEEEEecCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEEec
Q 002272 10 VHEGKLLVHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNK 86 (944)
Q Consensus 10 ~~~~~m~V~~A~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVfdR 86 (944)
.....|+|++.. |+++.+++.+..||.+||+.|+..+|||++.|.|++.|..|++..+|.+|++. +..+|+|.-|
T Consensus 15 ~~~~~m~I~Vk~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~-~gstI~lv~r 89 (93)
T 2l7r_A 15 VPRGSMQLFVRA-QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATLGQCGVE-ALTTLEVAGR 89 (93)
T ss_dssp -----CEEEEES-SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBHHHHTCC-SSCEEEEECC
T ss_pred CCCCcEEEEEEC-CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcHHHCCCC-CCCEEEEEEe
Confidence 344579999987 99999999999999999999999999999999999999999999999999998 7789999865
No 24
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=98.53 E-value=2e-07 Score=84.45 Aligned_cols=73 Identities=21% Similarity=0.394 Sum_probs=68.1
Q ss_pred EEEEEe-cCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEEeccc
Q 002272 15 LLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKLR 88 (944)
Q Consensus 15 m~V~~A-~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVfdRrl 88 (944)
|+|++. .+|.++.+++.+..||.+||..|+..+|||++.|.|++.|..|++..+|.+|++. +..+|||+-|..
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~-~~~~i~l~~r~~ 75 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ-KESTLHLVLRLR 75 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCC-TTCEEEEEECCC
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcHHHcCCC-CCCEEEEEEEcC
Confidence 889998 6899999999999999999999999999999999999999999999999999997 788999998744
No 25
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.53 E-value=2.1e-07 Score=82.76 Aligned_cols=75 Identities=20% Similarity=0.244 Sum_probs=68.8
Q ss_pred CCeEEEEEe-cCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEEecc
Q 002272 12 EGKLLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKL 87 (944)
Q Consensus 12 ~~~m~V~~A-~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVfdRr 87 (944)
++.|+|++. .+|+++.+++.+..||.+||..|+..+|||++.|.|++.|..|++..+|.+|++. +..+|||+-|.
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~-~g~~i~l~~~~ 80 (87)
T 1wh3_A 5 SSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQ-DSDTLILSKKK 80 (87)
T ss_dssp SSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBHHHHTCC-TTEEEEEEECS
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCHHHCCCC-CCCEEEEEEec
Confidence 357999998 5899999999999999999999999999999999999999999999999999998 77899998764
No 26
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.52 E-value=1.6e-07 Score=87.35 Aligned_cols=75 Identities=15% Similarity=0.185 Sum_probs=69.0
Q ss_pred CCeEEEEEe-cCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEEecc
Q 002272 12 EGKLLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKL 87 (944)
Q Consensus 12 ~~~m~V~~A-~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVfdRr 87 (944)
+..|+|++. .+|+++.+++....||.+||..|+..+|||++.|.|++.|..|++..+|..||+. +..+|+|+.+.
T Consensus 21 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~-~g~ti~lv~~~ 96 (106)
T 1ttn_A 21 GYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIP-KDYVVQVIVSQ 96 (106)
T ss_dssp CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTTSHHHHCCCS-SSCEEEEECCC
T ss_pred CCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCC-CCCEEEEEEeC
Confidence 446999998 5899999999999999999999999999999999999999999999999999998 78899998764
No 27
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.51 E-value=2.8e-07 Score=80.53 Aligned_cols=74 Identities=16% Similarity=0.258 Sum_probs=67.1
Q ss_pred CCeEEEEEe-cCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEEec
Q 002272 12 EGKLLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNK 86 (944)
Q Consensus 12 ~~~m~V~~A-~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVfdR 86 (944)
+..|+|++. .+|+.+.+++.+..||.+||+.|+..+|||++.|.|++.|..|.+..+|.+||+. +..+|+|.-|
T Consensus 5 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~-~g~~i~l~~~ 79 (81)
T 2dzi_A 5 SSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRLSDYSIG-PNSKLNLVVK 79 (81)
T ss_dssp SSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBGGGGTCC-SSBCCEEECC
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcHHHcCCC-CCCEEEEEEe
Confidence 346999997 6899999999999999999999999999999999999999999999999999998 6778888765
No 28
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=98.51 E-value=2.9e-07 Score=81.38 Aligned_cols=74 Identities=12% Similarity=0.222 Sum_probs=67.2
Q ss_pred CCeEEEEEe-cCCceEEecCCCCCCHHHHHHHHHHH---hCCCCCCeEEeecCccccccchhccccCCCCCceEEEEec
Q 002272 12 EGKLLVHIS-ENGHSFELDCNENSPVEAVMRFIESA---AGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNK 86 (944)
Q Consensus 12 ~~~m~V~~A-~tG~sl~ld~~~f~sVe~LK~~Ia~~---~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVfdR 86 (944)
++.|+|++. .+|+++.+++.+..||.+||+.|+.. +|||++.|.|++.|..|++..+|.+|++. +..+|+|..+
T Consensus 3 ~~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~-~g~~i~l~~~ 80 (85)
T 2wyq_A 3 PMAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRID-EKNFVVVMVT 80 (85)
T ss_dssp -CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGGGGCCC-TTSEEEEEEC
T ss_pred CceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHHHcCCC-CCCEEEEEEc
Confidence 457999997 57999999999999999999999998 89999999999999999999999999998 7889998864
No 29
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=98.51 E-value=1.9e-07 Score=81.55 Aligned_cols=73 Identities=4% Similarity=0.151 Sum_probs=68.1
Q ss_pred eEEEEEe-cCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEEecc
Q 002272 14 KLLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKL 87 (944)
Q Consensus 14 ~m~V~~A-~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVfdRr 87 (944)
.|+|++. .+|+++.+++.+.++|.+||+.|+...|||++.|.|++.|..|.+..++.+|++. +...|+|+-|.
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~-~~~~i~l~~~~ 76 (79)
T 2uyz_B 3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGME-EEDVIEVYQEQ 76 (79)
T ss_dssp EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCC-TTEEEEEEECC
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCCCCHHHcCCC-CCCEEEEEEec
Confidence 5899997 6999999999999999999999999999999999999999999999999999998 78899998763
No 30
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=98.50 E-value=3e-07 Score=84.88 Aligned_cols=75 Identities=20% Similarity=0.173 Sum_probs=68.4
Q ss_pred cCCeEEEEEecCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEEec
Q 002272 11 HEGKLLVHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNK 86 (944)
Q Consensus 11 ~~~~m~V~~A~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVfdR 86 (944)
....|+|++...|.++.+++.+..||.+||..|+..+|||++.|.|++.|..|++..+|.+||+. +..+|+|..+
T Consensus 22 ~~~~m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~-~g~~I~l~~~ 96 (101)
T 2klc_A 22 HPKIMKVTVKTPKEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIH-DGLTVHLVIK 96 (101)
T ss_dssp -CCCEEEEEECSSCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCTGGGTCC-TTCEEEEEEC
T ss_pred CCCeEEEEEEeCCcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCC-CCCEEEEEEc
Confidence 34579999987799999999999999999999999999999999999999999999999999998 7789999875
No 31
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=98.49 E-value=2.2e-07 Score=85.12 Aligned_cols=76 Identities=4% Similarity=0.140 Sum_probs=69.6
Q ss_pred cCCeEEEEEe-cCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEEecc
Q 002272 11 HEGKLLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKL 87 (944)
Q Consensus 11 ~~~~m~V~~A-~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVfdRr 87 (944)
.+..|+|++. .+|+++.+++.+.++|.+||..|+...|||++.|.|++.|..|.+..++..|++. +...|+|+-|.
T Consensus 18 ~~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~-~g~~I~l~~~~ 94 (97)
T 1wyw_B 18 EGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGME-EEDVIEVYQEQ 94 (97)
T ss_dssp -CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCHHHHTCC-TTCEEEEEESS
T ss_pred CCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCCCCHHHCCCC-CCCEEEEEEec
Confidence 4457999998 6999999999999999999999999999999999999999999999999999998 78899998764
No 32
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.49 E-value=2.5e-07 Score=84.50 Aligned_cols=80 Identities=15% Similarity=0.111 Sum_probs=69.3
Q ss_pred ccccccCCeEEEEEecCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEEe
Q 002272 6 TEVLVHEGKLLVHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFN 85 (944)
Q Consensus 6 ~~~~~~~~~m~V~~A~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVfd 85 (944)
.+..+....|+|++.++|+++.+++.+..||.+||+.|+..+|||++.|.|++.|..|++ .+|..|++. +..+|+|..
T Consensus 9 ~~~~~~~~~~~i~Vk~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~Ldd-~tL~~~~i~-~g~~i~lv~ 86 (95)
T 1v86_A 9 AGGGVGKELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVPED-KTLREIKVT-SGAKIMVVG 86 (95)
T ss_dssp CCCCCCCCCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCCSS-SBHHHHCCC-TTEEEEECC
T ss_pred CCCCCCCceEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeCCc-CcHHHCCCC-CCCEEEEEe
Confidence 344445567999999999999999999999999999999999999999999998888854 599999997 778899876
Q ss_pred cc
Q 002272 86 KL 87 (944)
Q Consensus 86 Rr 87 (944)
+.
T Consensus 87 ~~ 88 (95)
T 1v86_A 87 ST 88 (95)
T ss_dssp SS
T ss_pred cc
Confidence 54
No 33
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=98.49 E-value=2.9e-07 Score=84.06 Aligned_cols=72 Identities=19% Similarity=0.378 Sum_probs=66.8
Q ss_pred EEEEEe-cCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEEecc
Q 002272 15 LLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKL 87 (944)
Q Consensus 15 m~V~~A-~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVfdRr 87 (944)
|+|++. .+|+++.+++.+..||.+||..|+..+|||++.|.|++.|..|.+..+|.+||+. +..+|+|+.|.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~-~g~~i~l~~~~ 73 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ-KESTLHLVLRL 73 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTTSBTGGGTCC-TTCEEEEEECC
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCHHHcCCC-CCCEEEEEEeC
Confidence 789997 5899999999999999999999999999999999999999999999999999998 78899998863
No 34
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.48 E-value=5.7e-07 Score=83.49 Aligned_cols=82 Identities=9% Similarity=0.092 Sum_probs=69.3
Q ss_pred ccccccCCeEEEEEecCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEEe
Q 002272 6 TEVLVHEGKLLVHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFN 85 (944)
Q Consensus 6 ~~~~~~~~~m~V~~A~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVfd 85 (944)
++.......|+|++...+..+.+++....+|.+||..|+..+|||++.|.|++.|..|++..+|.+|++. +..+|||+.
T Consensus 9 ~~~~~~~~~m~I~Vk~~~g~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~-~g~~i~l~~ 87 (106)
T 1wx7_A 9 PAPVQDPHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVR-DGLTVHLVI 87 (106)
T ss_dssp CSCCCCSSEEEEEEECSSCEEEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTTSCHHHHTCC-TTEEEEEEE
T ss_pred CCCCCCCceEEEEEEeCCCcEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHcCCC-CCCEEEEEE
Confidence 3333345679999985443578888899999999999999999999999999999999999999999998 778999998
Q ss_pred ccc
Q 002272 86 KLR 88 (944)
Q Consensus 86 Rrl 88 (944)
|..
T Consensus 88 ~~~ 90 (106)
T 1wx7_A 88 KRQ 90 (106)
T ss_dssp CCC
T ss_pred cCC
Confidence 643
No 35
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.46 E-value=4.3e-07 Score=81.12 Aligned_cols=74 Identities=11% Similarity=0.167 Sum_probs=67.5
Q ss_pred CeEEEEEe-cCC-ceEEe-cCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEEecc
Q 002272 13 GKLLVHIS-ENG-HSFEL-DCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKL 87 (944)
Q Consensus 13 ~~m~V~~A-~tG-~sl~l-d~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVfdRr 87 (944)
..|+|++. .+| +++.+ ++.+..||.+||+.|+..+|||++.|.|++.|..|++..+|.+|++. +..+|+|.-|.
T Consensus 6 ~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~-~g~~i~l~~~~ 82 (89)
T 1wy8_A 6 SGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTLFDYDVG-LNDIIQLLVRP 82 (89)
T ss_dssp SCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBHHHHTCC-TTCEEEEEECC
T ss_pred CcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCHHHCCCC-CCCEEEEEEeC
Confidence 56999997 589 79999 59999999999999999999999999999999999999999999998 77899998764
No 36
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.46 E-value=5.4e-07 Score=86.53 Aligned_cols=76 Identities=17% Similarity=0.121 Sum_probs=68.7
Q ss_pred CCeEEEEEecCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEEeccc
Q 002272 12 EGKLLVHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKLR 88 (944)
Q Consensus 12 ~~~m~V~~A~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVfdRrl 88 (944)
...|+|++...|.++.+++....||.+||..|+..+|||++.|.|++.|..|++..+|.+|++. +..+|||+.+..
T Consensus 30 ~~~m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~-~gstI~lv~~~~ 105 (125)
T 1j8c_A 30 PKIIKVTVKTPKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIH-DGLTVHLVIKRD 105 (125)
T ss_dssp CCCEEEEEECSSCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCGGGTTCS-SSEEEEEEEC--
T ss_pred CCcEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCHHHcCCC-CCCEEEEEeccC
Confidence 4579999986699999999999999999999999999999999999999999999999999998 788999998753
No 37
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=98.45 E-value=1.7e-07 Score=84.53 Aligned_cols=76 Identities=9% Similarity=0.211 Sum_probs=67.3
Q ss_pred EEEEEe-cCCceEEecC--CCCCCHHHHHHHH-HHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEEeccccC
Q 002272 15 LLVHIS-ENGHSFELDC--NENSPVEAVMRFI-ESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKLRLQ 90 (944)
Q Consensus 15 m~V~~A-~tG~sl~ld~--~~f~sVe~LK~~I-a~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVfdRrll~ 90 (944)
|+|++. .+|+++.+++ .+.+||.+||+.| +...|||+++|.|++.|..|++..+|++|++..+..+|.|--+.-+.
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~~~~ 81 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKPNLE 81 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECCCCC
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCCCcc
Confidence 789997 7999888874 4999999999999 99999999999999999999999999999994367889988766553
No 38
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=98.44 E-value=4e-07 Score=83.03 Aligned_cols=76 Identities=14% Similarity=0.242 Sum_probs=67.8
Q ss_pred cCCeEEEEEecCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCcccccc-chhccccCCCCCceEEEEecc
Q 002272 11 HEGKLLVHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQ-KLLSAYRLPSDDKEVFIFNKL 87 (944)
Q Consensus 11 ~~~~m~V~~A~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~-~~L~~y~l~td~~eIyVfdRr 87 (944)
-...|+|++...+.++.+++.+..||.+||..|+..+|||++.|.|++.|..|++. .+|..|++. +..+|+|..|.
T Consensus 12 ~~~~~~I~Vk~~~~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~-~gstl~lv~r~ 88 (94)
T 2kan_A 12 AVRKIHVTVKFPSKQFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGIT-EFSEIVVFLKS 88 (94)
T ss_dssp SSCCEEEEEECSSCEEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCC-TTEEEEEEECC
T ss_pred CCCCEEEEEEcCCcEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCC-CCCEEEEEEeC
Confidence 45679999985444899999999999999999999999999999999999999888 999999998 78899998764
No 39
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.42 E-value=2.3e-07 Score=85.76 Aligned_cols=72 Identities=21% Similarity=0.351 Sum_probs=65.1
Q ss_pred eEEEEEecCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEEec
Q 002272 14 KLLVHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNK 86 (944)
Q Consensus 14 ~m~V~~A~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVfdR 86 (944)
.+.|++..+|+++.+++.+..||.+||+.|+..+|||++.|.|++.|..|++..+|.+||+. +..+|+|..+
T Consensus 28 ~i~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~-~g~tI~lv~~ 99 (101)
T 3m63_B 28 SLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTVESYHIQ-DGHSVHLVKS 99 (101)
T ss_dssp -CCEEEECSSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBTTTTTCC-TTEEEEECCC
T ss_pred EEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcHHHCCCC-CCCEEEEEeC
Confidence 45666667999999999999999999999999999999999999999999999999999998 7889998765
No 40
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=98.41 E-value=6.7e-07 Score=85.06 Aligned_cols=72 Identities=19% Similarity=0.152 Sum_probs=62.8
Q ss_pred EEEEEecCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCC------CCceEEEEec
Q 002272 15 LLVHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPS------DDKEVFIFNK 86 (944)
Q Consensus 15 m~V~~A~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~t------d~~eIyVfdR 86 (944)
|+|++.....++.+++.+.+||.+||+.|+...|||++.|.|+++|..|++..+|..||+.. ...+|++..|
T Consensus 3 mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr 80 (118)
T 2fnj_B 3 VFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR 80 (118)
T ss_dssp EEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB
T ss_pred EEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec
Confidence 45555433346889999999999999999999999999999999999999999999999985 5789999988
No 41
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=98.38 E-value=5.3e-07 Score=81.42 Aligned_cols=72 Identities=17% Similarity=0.304 Sum_probs=65.3
Q ss_pred CCeEEEEEecCCceEEe-cCCCCCCHHHHHHHHHHHhCCCCCCeEEe---ecCccccccchhccccCCCCCceEEEE
Q 002272 12 EGKLLVHISENGHSFEL-DCNENSPVEAVMRFIESAAGINFNDQLVL---CLDMKLEPQKLLSAYRLPSDDKEVFIF 84 (944)
Q Consensus 12 ~~~m~V~~A~tG~sl~l-d~~~f~sVe~LK~~Ia~~~gIp~~~QILL---~~G~kL~~~~~L~~y~l~td~~eIyVf 84 (944)
+..|+|++.++|+++.+ ++.+..+|.+||+.|+..+|||++.|.|+ +.|..|.+..+|..|++. +..+|+|.
T Consensus 5 ~~~m~i~Vk~~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~-~g~~l~l~ 80 (90)
T 1v5t_A 5 SSGLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLK-PNTKIMMM 80 (90)
T ss_dssp CCSCCEEEEETTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCC-TTEEEEEE
T ss_pred CceEEEEEEECCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCC-CCCEEEEE
Confidence 34689999999999999 99999999999999999999999999999 888889888999999988 66778774
No 42
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=98.37 E-value=8.2e-07 Score=83.33 Aligned_cols=74 Identities=19% Similarity=0.346 Sum_probs=68.7
Q ss_pred CeEEEEEe-cCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEEecc
Q 002272 13 GKLLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKL 87 (944)
Q Consensus 13 ~~m~V~~A-~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVfdRr 87 (944)
..|+|++. .+|+++.+++.+..||.+||..|+..+|||++.|.|++.|..|.+..+|.+|++. +..+|+|.-|-
T Consensus 34 ~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~-~gs~I~l~~rl 108 (111)
T 3vdz_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ-KESTLHLVLRL 108 (111)
T ss_dssp GCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCC-TTCEEEEEECC
T ss_pred ccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCCCcHHHCCCC-CCCEEEEEEec
Confidence 47999998 6999999999999999999999999999999999999999999999999999997 78899998763
No 43
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=98.37 E-value=6.9e-07 Score=89.68 Aligned_cols=77 Identities=17% Similarity=0.339 Sum_probs=68.6
Q ss_pred cccCCeEEEEEe-cCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEEec
Q 002272 9 LVHEGKLLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNK 86 (944)
Q Consensus 9 ~~~~~~m~V~~A-~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVfdR 86 (944)
......|+|++. .+|+++.+++.+..||.+||..|+..+|||++.|.|++.|..|++..+|.+|++. +..+|+|..+
T Consensus 15 ~~~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~-~~~~l~l~~~ 92 (172)
T 3u30_A 15 VPRGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ-KESTLHLVLR 92 (172)
T ss_dssp ----CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTGGGTCC-TTCEEEEEEC
T ss_pred CCCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCccccccCCHhHcCCc-ccceeeeeec
Confidence 345668999998 8999999999999999999999999999999999999999999999999999998 7788888875
No 44
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=97.71 E-value=5e-08 Score=84.45 Aligned_cols=71 Identities=11% Similarity=0.275 Sum_probs=65.0
Q ss_pred EEEEEe-cCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEEec
Q 002272 15 LLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNK 86 (944)
Q Consensus 15 m~V~~A-~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVfdR 86 (944)
|+|++. .+|+++.+++.+..||.+||..|+..+|||++.|.|++.|..|++..+|.+||+. +..+|+|.-|
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~-~g~~i~l~~r 72 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNHLTVQNCDLE-QQSIVHIVQR 72 (76)
Confidence 788997 5899999999999999999999999999999999999999999999999999998 6778888755
No 45
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=98.35 E-value=1.1e-06 Score=78.66 Aligned_cols=71 Identities=10% Similarity=0.159 Sum_probs=64.4
Q ss_pred eEEEEEecCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEEe
Q 002272 14 KLLVHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFN 85 (944)
Q Consensus 14 ~m~V~~A~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVfd 85 (944)
.+.++...+|+++.+++.+..||.+||+.|+..+|||++.|.|++.|..|++..+|.+|++. +..+|+|..
T Consensus 12 ~~~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~-~g~~l~l~~ 82 (85)
T 2kd0_A 12 TIKLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETSTLKQSDVG-SGAKLMLMA 82 (85)
T ss_dssp CEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTTCBTTTTTCC-TTEEEEEEC
T ss_pred cEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCcCCHHHCCCC-CCCEEEEEE
Confidence 45666678999999999999999999999999999999999999999999999999999998 678888865
No 46
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.34 E-value=6.9e-07 Score=82.69 Aligned_cols=75 Identities=12% Similarity=0.225 Sum_probs=65.3
Q ss_pred eEEEEEe-cCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEee-cCccccccchhccccCCCCCceEEEEecccc
Q 002272 14 KLLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLC-LDMKLEPQKLLSAYRLPSDDKEVFIFNKLRL 89 (944)
Q Consensus 14 ~m~V~~A-~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~-~G~kL~~~~~L~~y~l~td~~eIyVfdRrll 89 (944)
.|++|+. .+|+++.+++.+.++|.+||+.|++++|||++.|.|+. .+++|++...|..|++. ...+|+|-.+.+-
T Consensus 8 ~m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gkL~D~~tLs~~~I~-~gstL~lvl~~~~ 84 (100)
T 2dzm_A 8 RMLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGDVEDSTVLKSLHLP-KNNSLYVLTPDLP 84 (100)
T ss_dssp CEEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSCCCTTSBHHHHCCC-SEEEEEECCSSSC
T ss_pred ceEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCCCCCcCCHHHcCCC-CCCEEEEEecCCC
Confidence 5888886 89999999999999999999999999999999999975 56679988999999998 5688888665544
No 47
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=98.33 E-value=1.1e-06 Score=82.99 Aligned_cols=76 Identities=20% Similarity=0.390 Sum_probs=69.5
Q ss_pred CCeEEEEEe-cCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEEeccc
Q 002272 12 EGKLLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKLR 88 (944)
Q Consensus 12 ~~~m~V~~A-~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVfdRrl 88 (944)
-+..+|++. .+|+++.+++.+..||.+||..|+..+|||++.|.|++.|..|++..+|.+|++. +..+|+|..|..
T Consensus 7 ~~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~-~gstI~l~~~~~ 83 (114)
T 2kdi_A 7 HGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQ-RESTLHLVLRLR 83 (114)
T ss_dssp CCCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBTTTTTCC-SSCEEEEEECCC
T ss_pred CCcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcHHHCCCC-CCCEEEEEEEcC
Confidence 456789996 7999999999999999999999999999999999999999999999999999998 788999998643
No 48
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=98.33 E-value=9.2e-07 Score=81.53 Aligned_cols=76 Identities=9% Similarity=0.096 Sum_probs=66.5
Q ss_pred cCCeEEEEEecCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEEecc
Q 002272 11 HEGKLLVHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKL 87 (944)
Q Consensus 11 ~~~~m~V~~A~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVfdRr 87 (944)
.+..|+|++...+..+.+++.+..||.+||..|+..+|||++.|.|++.|..|++..+|.+|++. +..+|+|+.|.
T Consensus 19 ~~~~m~I~Vk~~~g~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~-~gstI~l~~r~ 94 (100)
T 1yqb_A 19 SPHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVR-DGLTVHLVIKR 94 (100)
T ss_dssp CTTEEEEEEECSSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBHHHHTCC-TTCEEEEEECC
T ss_pred CCCeEEEEEEcCCCcEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcHHHCCCC-CCCEEEEEEcC
Confidence 34579999985333478898899999999999999999999999999999999999999999998 77899998763
No 49
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.32 E-value=9.1e-07 Score=80.81 Aligned_cols=74 Identities=11% Similarity=0.187 Sum_probs=65.6
Q ss_pred eEEEEEecCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCcc--ccccchhccccCCCCCceEEEEecc
Q 002272 14 KLLVHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMK--LEPQKLLSAYRLPSDDKEVFIFNKL 87 (944)
Q Consensus 14 ~m~V~~A~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~k--L~~~~~L~~y~l~td~~eIyVfdRr 87 (944)
-++||+..++..+.+++.+..++..||+.|++++|||+++|.||++|.. |++......|...+.++||+||++.
T Consensus 14 vvHVf~~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~s~~ 89 (94)
T 4efo_A 14 VIHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVSLE 89 (94)
T ss_dssp EEEEEETTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEEECC
T ss_pred eEEEEEcccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEEecC
Confidence 3689999999999999999999999999999999999999999999854 5666666777767789999999975
No 50
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=98.32 E-value=1.4e-06 Score=81.33 Aligned_cols=74 Identities=11% Similarity=0.072 Sum_probs=65.3
Q ss_pred CeEEEEEec-C--CceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEEec
Q 002272 13 GKLLVHISE-N--GHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNK 86 (944)
Q Consensus 13 ~~m~V~~A~-t--G~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVfdR 86 (944)
-+|+|++.. . +.++.+++.+..||.+||+.|++++|||++.|.++++|.-+++.++|.+||+..+..+||+|--
T Consensus 23 i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~ 99 (105)
T 4dbg_A 23 IRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLL 99 (105)
T ss_dssp EEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEEC
T ss_pred EEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEE
Confidence 389999974 3 4789999999999999999999999999999998887776678999999999668899999864
No 51
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=98.31 E-value=1.3e-06 Score=81.72 Aligned_cols=76 Identities=17% Similarity=0.181 Sum_probs=68.6
Q ss_pred cCCeEEEEEe-c---CCceEEecCCC-CCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEEe
Q 002272 11 HEGKLLVHIS-E---NGHSFELDCNE-NSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFN 85 (944)
Q Consensus 11 ~~~~m~V~~A-~---tG~sl~ld~~~-f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVfd 85 (944)
+++.|+|++. . +|+++.+++.+ ..||.+||..|+..+|||++.|.|++.|..|++..+|.+|++. +..+|+|.-
T Consensus 24 ~~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~-~g~~l~l~~ 102 (111)
T 1we6_A 24 HPGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVG-AGEILTLSL 102 (111)
T ss_dssp CCSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCS-SSCEEEEEC
T ss_pred CCCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcHHHCCCC-CCCEEEEEE
Confidence 4567999997 4 89999999997 9999999999999999999999999999999999999999998 778899986
Q ss_pred cc
Q 002272 86 KL 87 (944)
Q Consensus 86 Rr 87 (944)
|.
T Consensus 103 r~ 104 (111)
T 1we6_A 103 RE 104 (111)
T ss_dssp SS
T ss_pred Ec
Confidence 54
No 52
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.31 E-value=8e-07 Score=81.40 Aligned_cols=70 Identities=13% Similarity=0.172 Sum_probs=63.9
Q ss_pred CeEEEEEecCCceE-EecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEE
Q 002272 13 GKLLVHISENGHSF-ELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIF 84 (944)
Q Consensus 13 ~~m~V~~A~tG~sl-~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVf 84 (944)
..|+|++.+.|+++ .+++....+|.+||+.|+..+|||++.|.|++.|+.|.+. +|..|++. +..+|+|.
T Consensus 6 ~~m~i~Vk~~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~-~g~~i~l~ 76 (96)
T 1wgg_A 6 SGYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD-DWGNIKMK-NGMTVLMM 76 (96)
T ss_dssp CEEEEEEEETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS-CCCSCCCC-SSCEEECC
T ss_pred cEEEEEEEECCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCC-CCCEEEEE
Confidence 46999999999999 6999999999999999999999999999999999999888 99999988 67778774
No 53
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.30 E-value=1.5e-06 Score=78.44 Aligned_cols=73 Identities=19% Similarity=0.301 Sum_probs=64.9
Q ss_pred CeEEEEEecCCceEEecCCCC-----CCHHHHHHHHHHHhCCCCCCeEEeecCccccc-cchhccccCCCCCceEEEEec
Q 002272 13 GKLLVHISENGHSFELDCNEN-----SPVEAVMRFIESAAGINFNDQLVLCLDMKLEP-QKLLSAYRLPSDDKEVFIFNK 86 (944)
Q Consensus 13 ~~m~V~~A~tG~sl~ld~~~f-----~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~-~~~L~~y~l~td~~eIyVfdR 86 (944)
..|+|++.+.|+++.+++... .||.+||+.|+..+|||++.|.|++.|..|.+ ..+|..|++. +...|+|..+
T Consensus 6 ~~~~v~Vk~~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~-~g~~i~l~~~ 84 (92)
T 1wxv_A 6 SGLTVTVTHSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQ-DGCRVMLIGK 84 (92)
T ss_dssp SSEEEEEECSSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCC-SSEEEEEESC
T ss_pred CeEEEEEEECCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCC-CCCEEEEEec
Confidence 469999998999999998874 99999999999999999999999999998987 5589999987 6788988764
No 54
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=98.29 E-value=1.5e-06 Score=85.87 Aligned_cols=75 Identities=19% Similarity=0.203 Sum_probs=69.4
Q ss_pred CCeEEEEEe-cCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEEecc
Q 002272 12 EGKLLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKL 87 (944)
Q Consensus 12 ~~~m~V~~A-~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVfdRr 87 (944)
++.|+|++. .+|+++.+++.+..||.+||..|+..+|||++.|.|++.|..|++..+|.+|++. +..+|+|.-|-
T Consensus 79 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~-~g~~l~l~~rl 154 (159)
T 3rt3_B 79 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLK-PLSTVFMNLRL 154 (159)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGGGGTCC-TTCEEEEEECC
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCCCCHHHcCCC-CCCEEEEEEec
Confidence 567999997 5899999999999999999999999999999999999999999999999999988 78899998763
No 55
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=98.28 E-value=1.8e-06 Score=87.10 Aligned_cols=73 Identities=19% Similarity=0.395 Sum_probs=67.8
Q ss_pred EEEEEe-cCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEEeccc
Q 002272 15 LLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKLR 88 (944)
Q Consensus 15 m~V~~A-~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVfdRrl 88 (944)
|+|++. .+|+++.+++.+..||.+||..|+..+|||++.|.|++.|..|++..+|.+|++. +..+|+|.-|..
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~-~gstI~Lvlrl~ 74 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ-KESTLHLVLRLR 74 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBGGGGTCC-TTCEEEEEECCC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcHHHcCCC-CCCEEEEEEEec
Confidence 789997 6999999999999999999999999999999999999999999999999999997 788999998643
No 56
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.27 E-value=1.8e-06 Score=79.71 Aligned_cols=73 Identities=18% Similarity=0.289 Sum_probs=64.1
Q ss_pred eEEEEEec-CC----ceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCcccccc-chhccccCCCCCceEEEEecc
Q 002272 14 KLLVHISE-NG----HSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQ-KLLSAYRLPSDDKEVFIFNKL 87 (944)
Q Consensus 14 ~m~V~~A~-tG----~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~-~~L~~y~l~td~~eIyVfdRr 87 (944)
.|+|++.. +| +++.+++....||.+||+.|+..+|||++.|.|++.|..|++. .+|.+|++. +..+|+|..+.
T Consensus 7 ~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~-~g~~l~l~~~~ 85 (102)
T 1v5o_A 7 GMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLK-DGDMVVLLQKD 85 (102)
T ss_dssp CEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCC-TTEEEEECBCC
T ss_pred eEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCC-CCCEEEEEECC
Confidence 48888864 33 7999999999999999999999999999999999999999776 689999998 77889988764
No 57
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=98.26 E-value=2.6e-06 Score=79.78 Aligned_cols=74 Identities=19% Similarity=0.346 Sum_probs=67.9
Q ss_pred CeEEEEEe-cCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEEecc
Q 002272 13 GKLLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKL 87 (944)
Q Consensus 13 ~~m~V~~A-~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVfdRr 87 (944)
..|+|++. .+|+++.+++.+..||.+||..|+..+|||++.|.|++.|..|.+..+|.+|++. +..+|+|.-|.
T Consensus 34 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~-~gs~I~l~~rl 108 (111)
T 2ojr_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ-KESTLHLVLRL 108 (111)
T ss_dssp SCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSSCBTTTTTCC-TTCEEEEEECC
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCCCcHHHcCCC-CCCEEEEEEeC
Confidence 47999998 5899999999999999999999999999999999999999999999999999998 77899998663
No 58
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=98.26 E-value=1.4e-06 Score=80.42 Aligned_cols=74 Identities=9% Similarity=0.235 Sum_probs=64.0
Q ss_pred cCCeEEEEEe-cCCceEEe--cCCCCCCHHHHHHHH-HHHhCCCCCCeEEeecCccccccchhccccC-CCCCceEEEEe
Q 002272 11 HEGKLLVHIS-ENGHSFEL--DCNENSPVEAVMRFI-ESAAGINFNDQLVLCLDMKLEPQKLLSAYRL-PSDDKEVFIFN 85 (944)
Q Consensus 11 ~~~~m~V~~A-~tG~sl~l--d~~~f~sVe~LK~~I-a~~~gIp~~~QILL~~G~kL~~~~~L~~y~l-~td~~eIyVfd 85 (944)
.++.|+|++. .+|+++.+ ++.+..||.+||+.| +...|||+++|.|++.|+.|.+..+|..|++ . +..+|.|.-
T Consensus 16 ~~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~-~g~ti~lmv 94 (98)
T 4a20_A 16 DNAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFLSDLKVTP-ANSTITVMI 94 (98)
T ss_dssp --CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBGGGSCCBT-TBCEEEEEE
T ss_pred CCCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCHHHcCcCC-CCCEEEEEE
Confidence 3467999997 69998766 566999999999999 8889999999999999999999999999999 5 677887764
No 59
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=98.25 E-value=3.1e-06 Score=80.39 Aligned_cols=71 Identities=18% Similarity=0.154 Sum_probs=63.3
Q ss_pred EEEEEecCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCC-------CceEEEEec
Q 002272 15 LLVHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSD-------DKEVFIFNK 86 (944)
Q Consensus 15 m~V~~A~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td-------~~eIyVfdR 86 (944)
|+|.+.....++.+++.+.+||.+||+.|+...|||++.|.|+++|..|++.++|..||+. . ..+|++-.|
T Consensus 3 vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~-~~ta~~q~~atl~Lvlr 80 (118)
T 4ajy_B 3 VFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFT-SQTARPQAPATVGLAFR 80 (118)
T ss_dssp EEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTTTTTCC-GGGSBTTBCEEEEEEEC
T ss_pred eEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCC-cCcccCCCCCEEEEEEe
Confidence 4444455666899999999999999999999999999999999999999999999999998 5 789999887
No 60
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.21 E-value=3.2e-06 Score=76.47 Aligned_cols=74 Identities=11% Similarity=0.112 Sum_probs=65.5
Q ss_pred CeEEEEEe-cCCc--eEEecCCCCCCHHHHHHHHHHHh--CCCCCCeEEeecCccccccchhccc--cCCCCCceEEEEe
Q 002272 13 GKLLVHIS-ENGH--SFELDCNENSPVEAVMRFIESAA--GINFNDQLVLCLDMKLEPQKLLSAY--RLPSDDKEVFIFN 85 (944)
Q Consensus 13 ~~m~V~~A-~tG~--sl~ld~~~f~sVe~LK~~Ia~~~--gIp~~~QILL~~G~kL~~~~~L~~y--~l~td~~eIyVfd 85 (944)
..|+|++. .+|. .+.+++.+..||.+||+.|+..+ |||+++|.|++.|..|++..+|.+| ++. +..+|+|..
T Consensus 6 ~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~-~~~~i~lv~ 84 (93)
T 1wgd_A 6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQE-KRHVLHLVC 84 (93)
T ss_dssp CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSS-CSEEEEEEC
T ss_pred cEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCC-CCCEEEEEe
Confidence 45899997 5677 68888889999999999999999 9999999999999999999999999 887 778898876
Q ss_pred cc
Q 002272 86 KL 87 (944)
Q Consensus 86 Rr 87 (944)
|.
T Consensus 85 ~~ 86 (93)
T 1wgd_A 85 NV 86 (93)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 61
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=98.18 E-value=3.4e-06 Score=81.96 Aligned_cols=72 Identities=19% Similarity=0.378 Sum_probs=66.6
Q ss_pred EEEEEe-cCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEEecc
Q 002272 15 LLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKL 87 (944)
Q Consensus 15 m~V~~A-~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVfdRr 87 (944)
|+|++. .+|.++.+++.+..||.+||..|+..+|||++.|.|++.|..|++..+|.+||+. +..+|+|..+.
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~-~~~~l~l~~~~ 73 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ-KESTLHLVLRL 73 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCC-TTCEEEEEECC
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCcccHHHhccC-CCCeeEEEeec
Confidence 789997 6899999999999999999999999999999999999999999999999999998 77889998863
No 62
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=98.17 E-value=4.4e-06 Score=82.47 Aligned_cols=71 Identities=14% Similarity=0.185 Sum_probs=66.5
Q ss_pred EEEEEe-cCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEe-e-cCccccccchhccccCCCCCceEEEEec
Q 002272 15 LLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVL-C-LDMKLEPQKLLSAYRLPSDDKEVFIFNK 86 (944)
Q Consensus 15 m~V~~A-~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL-~-~G~kL~~~~~L~~y~l~td~~eIyVfdR 86 (944)
|+|++. .+|+++.+++.+..||.+||..|+..+|||++.|.|+ + +|..|++..+|.+|++. +..+|++.-+
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~-~~~~l~l~~~ 76 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLG-PGSTVLLVVD 76 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCC-TTCEEEEEEC
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCC-CCCEEEEEcc
Confidence 889997 7999999999999999999999999999999999998 8 69999999999999998 7888998876
No 63
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=98.17 E-value=2.3e-07 Score=89.26 Aligned_cols=72 Identities=18% Similarity=0.379 Sum_probs=0.0
Q ss_pred EEEEEe-cCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEEecc
Q 002272 15 LLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKL 87 (944)
Q Consensus 15 m~V~~A-~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVfdRr 87 (944)
|+|++. .+|.++.+++.+..||.+||..|+..+|||++.|.|++.|..|++..+|.+||+. +..+|+|+-|.
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~-~gsti~l~~rl 73 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ-KESTLHLVLRL 73 (128)
T ss_dssp --------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCCCchhhhccC-CCCEEEEEEEc
Confidence 788887 5899999999999999999999999999999999999999999999999999998 78889988763
No 64
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=98.17 E-value=3.3e-06 Score=86.68 Aligned_cols=75 Identities=17% Similarity=0.294 Sum_probs=69.0
Q ss_pred cCCeEEEEEe-cCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEEec
Q 002272 11 HEGKLLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNK 86 (944)
Q Consensus 11 ~~~~m~V~~A-~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVfdR 86 (944)
.-..|+|++. .+|+++.+++.+..||.+||..|+..+|||++.|.|++.|..|++..+|.+|++. +..+|+|.-|
T Consensus 102 d~~eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~-~gstI~Lvlr 177 (189)
T 3q3f_A 102 DHYGGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ-KESTLHLVLR 177 (189)
T ss_dssp CCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBGGGGTCC-TTCEEEECCC
T ss_pred cccceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCHHHCCCC-CCCEEEEEEE
Confidence 3446999998 5899999999999999999999999999999999999999999999999999997 7889999876
No 65
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=98.14 E-value=2.6e-06 Score=78.68 Aligned_cols=72 Identities=14% Similarity=0.112 Sum_probs=59.9
Q ss_pred cCCeEEEEEe-cCCc--eEEecCCCCCCHHHHHHHHHHHh-CCC-CCCeEEeecCccccccchhccc--cCCCCCceEEE
Q 002272 11 HEGKLLVHIS-ENGH--SFELDCNENSPVEAVMRFIESAA-GIN-FNDQLVLCLDMKLEPQKLLSAY--RLPSDDKEVFI 83 (944)
Q Consensus 11 ~~~~m~V~~A-~tG~--sl~ld~~~f~sVe~LK~~Ia~~~-gIp-~~~QILL~~G~kL~~~~~L~~y--~l~td~~eIyV 83 (944)
.++.|+|++. .+|. .+.+++.+..||.+||+.|+..+ |+| +++|.|++.|..|++..+|..| ++. +..+|+|
T Consensus 20 ~~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~-~~~tihL 98 (99)
T 2kdb_A 20 QGHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQLKDILRKQD-EYHMVHL 98 (99)
T ss_dssp ---CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBTHHHHTTTC-SEEEEEE
T ss_pred CCCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCHHHHhcCCC-CCCEEEe
Confidence 3456999997 6787 67888889999999999999975 666 5999999999999999999999 987 6677765
No 66
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=98.13 E-value=4.7e-06 Score=78.56 Aligned_cols=65 Identities=15% Similarity=0.189 Sum_probs=60.2
Q ss_pred CCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEEecc
Q 002272 22 NGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKL 87 (944)
Q Consensus 22 tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVfdRr 87 (944)
+|+++.+++.+..||.+||..|+..+|||++.|.|++.|..|++..+|.+|++. +..+|+|.-|.
T Consensus 44 ~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~-~g~~i~lv~rl 108 (115)
T 1we7_A 44 NGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMA-SGAVIHLALKE 108 (115)
T ss_dssp SSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTTSBHHHHTCC-SSCEEEEEECC
T ss_pred CCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCCCCHHHCCCC-CCCEEEEEEEc
Confidence 588999999999999999999999999999999999999999999999999998 77899998764
No 67
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.09 E-value=7.2e-06 Score=76.34 Aligned_cols=75 Identities=11% Similarity=0.110 Sum_probs=64.4
Q ss_pred CCeEEEEEec-CC---ceEEecC--------CCC-CCHHHHHHHHHHHh--CCCCCC-eEEeecCccccccchhccccCC
Q 002272 12 EGKLLVHISE-NG---HSFELDC--------NEN-SPVEAVMRFIESAA--GINFND-QLVLCLDMKLEPQKLLSAYRLP 75 (944)
Q Consensus 12 ~~~m~V~~A~-tG---~sl~ld~--------~~f-~sVe~LK~~Ia~~~--gIp~~~-QILL~~G~kL~~~~~L~~y~l~ 75 (944)
...|+|++.. +| ..+.+++ .+. .||.+||+.|+..+ |||++. |.|++.|..|++..+|..|++.
T Consensus 10 ~~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~ 89 (107)
T 1x1m_A 10 LSDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQ 89 (107)
T ss_dssp CCSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCC
T ss_pred CCceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCCCcHHHcCCC
Confidence 4468899985 55 5888884 444 99999999999999 999999 9999999999999999999998
Q ss_pred CCCceEEEEecc
Q 002272 76 SDDKEVFIFNKL 87 (944)
Q Consensus 76 td~~eIyVfdRr 87 (944)
+..+|+|..+.
T Consensus 90 -~g~~i~lv~~~ 100 (107)
T 1x1m_A 90 -PGSTVHVLRKS 100 (107)
T ss_dssp -TTCEEEEEESS
T ss_pred -CCCEEEEEeCC
Confidence 67889998764
No 68
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.08 E-value=4e-06 Score=77.55 Aligned_cols=70 Identities=11% Similarity=0.092 Sum_probs=61.8
Q ss_pred eEEEEEec-C--CceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEE
Q 002272 14 KLLVHISE-N--GHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIF 84 (944)
Q Consensus 14 ~m~V~~A~-t--G~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVf 84 (944)
.++|+... . |+++.+++.+..+|.+||+.|+..+|||++.|.|++.|..|++..+|.+|++. +...|.|.
T Consensus 17 ti~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~-~gsti~vl 89 (100)
T 1wju_A 17 TIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTLEEQGVA-HNVKAMVL 89 (100)
T ss_dssp EEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTTSBHHHHTCC-SSEEEEEE
T ss_pred EEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCC-CCCEEEEE
Confidence 46777653 3 88999999999999999999999999999999999999999999999999998 67777443
No 69
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=98.07 E-value=5.3e-06 Score=83.22 Aligned_cols=74 Identities=19% Similarity=0.376 Sum_probs=67.4
Q ss_pred CCeEEEEEe-cCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEEec
Q 002272 12 EGKLLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNK 86 (944)
Q Consensus 12 ~~~m~V~~A-~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVfdR 86 (944)
.+.|+|++. .+|+++.+++.+..||.+||..|+..+|||++.|.|++.|..|++..+|.+|++. +..+|+|.-|
T Consensus 94 ~gg~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~-~g~tl~l~~r 168 (172)
T 3u30_A 94 RGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ-KESTLHLVLR 168 (172)
T ss_dssp CCCEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBSGGGTCC-TTCEEEECC-
T ss_pred cccccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCCCcHHHhCCC-CCCEEEEEEe
Confidence 456788886 7999999999999999999999999999999999999999999999999999998 7889998765
No 70
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=98.07 E-value=9.1e-06 Score=78.95 Aligned_cols=75 Identities=20% Similarity=0.389 Sum_probs=68.0
Q ss_pred CCeEEEEEe-cCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEEecc
Q 002272 12 EGKLLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKL 87 (944)
Q Consensus 12 ~~~m~V~~A-~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVfdRr 87 (944)
.+.|+|++. .+|+++.+++.+..+|.+||..|+..+|||++.|.|++.|..|++..+|.+|++. +..+|+|+-|.
T Consensus 74 ~~~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~-~~~~i~l~~r~ 149 (152)
T 3b08_A 74 RGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ-KESTLHLVLRL 149 (152)
T ss_dssp TTCEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTGGGTCC-TTCEEEEEECC
T ss_pred ccccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCCCCHHHcCCC-CCCEEEEEEec
Confidence 345888886 6899999999999999999999999999999999999999999999999999998 77889998764
No 71
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=98.05 E-value=5.5e-07 Score=89.39 Aligned_cols=74 Identities=19% Similarity=0.370 Sum_probs=0.0
Q ss_pred EEEEEe-cCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEEecccc
Q 002272 15 LLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKLRL 89 (944)
Q Consensus 15 m~V~~A-~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVfdRrll 89 (944)
|+|++. .+|.++.+++.+.+||.+||..|+..+|||++.|.|++.|..|++..+|.+|++. +..+|+|.-|-.-
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~-~gstL~Lvlrl~G 75 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ-KESTLHLVLRLRG 75 (152)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEccccCcHHHcCCC-CCCEEEEEeeccC
Confidence 788887 5899999999999999999999999999999999999999999999999999998 7889999986443
No 72
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.04 E-value=4.3e-06 Score=78.03 Aligned_cols=75 Identities=19% Similarity=0.251 Sum_probs=64.5
Q ss_pred CCeEEEEEe-cCCceEEecCCCCCCHHHHHHHHHHHhCCCCC---------------CeEEeecCcccc-ccchhccccC
Q 002272 12 EGKLLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFN---------------DQLVLCLDMKLE-PQKLLSAYRL 74 (944)
Q Consensus 12 ~~~m~V~~A-~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~---------------~QILL~~G~kL~-~~~~L~~y~l 74 (944)
+..|+|++. .+|.++.+++.+..||.+||+.|++.+|||+. .|.|++.|..|. +..+|.+||+
T Consensus 5 ~~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI 84 (105)
T 1v2y_A 5 SSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGI 84 (105)
T ss_dssp CCSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTC
T ss_pred CCcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCC
Confidence 456999996 89999999999999999999999999999983 568999999996 6699999999
Q ss_pred CCCCceEEEEecc
Q 002272 75 PSDDKEVFIFNKL 87 (944)
Q Consensus 75 ~td~~eIyVfdRr 87 (944)
. +..+|++.-+.
T Consensus 85 ~-~g~~l~lv~~l 96 (105)
T 1v2y_A 85 R-NRDEVSFIKKL 96 (105)
T ss_dssp C-SSEEEEEEECS
T ss_pred C-CCCEEEEEehh
Confidence 8 67777666543
No 73
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=98.02 E-value=9.8e-06 Score=74.22 Aligned_cols=73 Identities=15% Similarity=0.190 Sum_probs=61.3
Q ss_pred CCeEEEEEec-CC--ceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecC-c----cc-cccchhccccCCCCCceEE
Q 002272 12 EGKLLVHISE-NG--HSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLD-M----KL-EPQKLLSAYRLPSDDKEVF 82 (944)
Q Consensus 12 ~~~m~V~~A~-tG--~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G-~----kL-~~~~~L~~y~l~td~~eIy 82 (944)
.+-+.|++.+ ++ .++.+++.+..||.+||+.|+..+|||++.|.|++.| + .| ++..+|.+|++. +..+|+
T Consensus 13 ~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~-~gstih 91 (95)
T 2kjr_A 13 SDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANS-DGLRLH 91 (95)
T ss_dssp CCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCS-SSCEEE
T ss_pred CCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcC-CCCEEE
Confidence 4567787774 33 4788888999999999999999999999999997653 3 34 788999999988 788999
Q ss_pred EEe
Q 002272 83 IFN 85 (944)
Q Consensus 83 Vfd 85 (944)
|.|
T Consensus 92 lvD 94 (95)
T 2kjr_A 92 VVD 94 (95)
T ss_dssp EEE
T ss_pred EEC
Confidence 987
No 74
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=98.02 E-value=1.5e-05 Score=73.34 Aligned_cols=75 Identities=20% Similarity=0.191 Sum_probs=62.2
Q ss_pred CCeEEEEEec-CC--ceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecC---cc----ccccchhccccCCCCCceE
Q 002272 12 EGKLLVHISE-NG--HSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLD---MK----LEPQKLLSAYRLPSDDKEV 81 (944)
Q Consensus 12 ~~~m~V~~A~-tG--~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G---~k----L~~~~~L~~y~l~td~~eI 81 (944)
.+.+.|++.+ ++ .++.+++.+..||.+||+.|+..+|||++.|.|++.| .. +++.++|.+|++. +..+|
T Consensus 12 ~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~-~g~~I 90 (97)
T 2kj6_A 12 DDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPF-DGFRL 90 (97)
T ss_dssp CCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCC-SCCEE
T ss_pred CceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCC-CCCEE
Confidence 4567777774 33 4788889999999999999999999999999997765 22 4888999999987 78999
Q ss_pred EEEecc
Q 002272 82 FIFNKL 87 (944)
Q Consensus 82 yVfdRr 87 (944)
+|.|.+
T Consensus 91 hlvd~~ 96 (97)
T 2kj6_A 91 HIIDLD 96 (97)
T ss_dssp EEEECC
T ss_pred EEEeCC
Confidence 998853
No 75
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.02 E-value=1.4e-05 Score=75.95 Aligned_cols=78 Identities=12% Similarity=0.099 Sum_probs=65.6
Q ss_pred cCCeEEEEEe-cCCceEEecCCCCCCHHHHHHHHHHHh------CC--CCCCeEEeecCccccccchhccccCCC-CCce
Q 002272 11 HEGKLLVHIS-ENGHSFELDCNENSPVEAVMRFIESAA------GI--NFNDQLVLCLDMKLEPQKLLSAYRLPS-DDKE 80 (944)
Q Consensus 11 ~~~~m~V~~A-~tG~sl~ld~~~f~sVe~LK~~Ia~~~------gI--p~~~QILL~~G~kL~~~~~L~~y~l~t-d~~e 80 (944)
....|+|++. .+|.++.+++.+.+||.+||+.|+..| || |++.|.|++.|..|++..+|.+|++.. +..+
T Consensus 13 ~~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~t 92 (116)
T 1wgh_A 13 PADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTV 92 (116)
T ss_dssp CSSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEE
T ss_pred CCCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceE
Confidence 3446999997 799999999999999999999999954 65 699999999999999999999999862 3356
Q ss_pred EEEEeccc
Q 002272 81 VFIFNKLR 88 (944)
Q Consensus 81 IyVfdRrl 88 (944)
|+|.-|..
T Consensus 93 lhLvlr~~ 100 (116)
T 1wgh_A 93 MHLVARET 100 (116)
T ss_dssp EEEEECSS
T ss_pred EEEEccCC
Confidence 77766543
No 76
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.98 E-value=1.5e-05 Score=72.56 Aligned_cols=71 Identities=14% Similarity=0.127 Sum_probs=60.8
Q ss_pred EEEEEecCCc--eEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecC---cc----ccccchhccccCCCCCceEEEEe
Q 002272 15 LLVHISENGH--SFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLD---MK----LEPQKLLSAYRLPSDDKEVFIFN 85 (944)
Q Consensus 15 m~V~~A~tG~--sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G---~k----L~~~~~L~~y~l~td~~eIyVfd 85 (944)
+.|++.+.+. .+.+++.+..||.+||+.|+..+|||++.|.|++.| .. +++..+|.+||+. +..+|+|-|
T Consensus 8 v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~-~g~~l~v~d 86 (95)
T 1v6e_A 8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVD-DGCRIHVID 86 (95)
T ss_dssp EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCC-TTCEEEEBC
T ss_pred EEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCC-CCCEEEEEE
Confidence 7777777666 688888999999999999999999999999997765 32 4788999999998 778999987
Q ss_pred c
Q 002272 86 K 86 (944)
Q Consensus 86 R 86 (944)
.
T Consensus 87 ~ 87 (95)
T 1v6e_A 87 H 87 (95)
T ss_dssp C
T ss_pred C
Confidence 3
No 77
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=97.97 E-value=1.6e-05 Score=72.03 Aligned_cols=72 Identities=8% Similarity=0.022 Sum_probs=64.6
Q ss_pred CCeEEEEEe-cCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCcccccc-chhccccCCCCCceEEEEecc
Q 002272 12 EGKLLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQ-KLLSAYRLPSDDKEVFIFNKL 87 (944)
Q Consensus 12 ~~~m~V~~A-~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~-~~L~~y~l~td~~eIyVfdRr 87 (944)
...|+|++. .+|..+.+++.+..+|.+||..|+..+ ++.|.|++.|..|.+. .+|..|++. +..+|+|..+.
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~-~g~~i~l~~~~ 78 (95)
T 1wia_A 5 SSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNIT-NNCVIHCHRSP 78 (95)
T ss_dssp CCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCC-TTEEEEEECCC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCC-CCCEEEEEECC
Confidence 456999996 689999999999999999999999998 7799999999999888 999999998 78899998764
No 78
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=97.95 E-value=1.1e-05 Score=77.47 Aligned_cols=81 Identities=12% Similarity=0.094 Sum_probs=68.0
Q ss_pred ccccCCeEEEEEe-cCCceEEecCCCCCCHHHHHHHHHH------HhCCC--CCCeEEeecCccccccchhccccCCCC-
Q 002272 8 VLVHEGKLLVHIS-ENGHSFELDCNENSPVEAVMRFIES------AAGIN--FNDQLVLCLDMKLEPQKLLSAYRLPSD- 77 (944)
Q Consensus 8 ~~~~~~~m~V~~A-~tG~sl~ld~~~f~sVe~LK~~Ia~------~~gIp--~~~QILL~~G~kL~~~~~L~~y~l~td- 77 (944)
+.+.+..|+|++. .+|.++.+++.+.+||.+||+.|+. ..||| +++|.|+++|..|++..+|.+|++...
T Consensus 11 ~~~~~~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~ 90 (125)
T 2gow_A 11 SNVPADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGK 90 (125)
T ss_dssp CSCCTTCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTS
T ss_pred cCCCCCeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCC
Confidence 3445667999996 7999999999999999999999999 45784 889999999999999999999999732
Q ss_pred CceEEEEeccc
Q 002272 78 DKEVFIFNKLR 88 (944)
Q Consensus 78 ~~eIyVfdRrl 88 (944)
..+|+|.-|..
T Consensus 91 ~~tlhlv~r~~ 101 (125)
T 2gow_A 91 TTVMHLVARET 101 (125)
T ss_dssp EEEEEEEECSC
T ss_pred ceEEEEEecCC
Confidence 34677777654
No 79
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=97.84 E-value=2.8e-05 Score=85.21 Aligned_cols=76 Identities=18% Similarity=0.345 Sum_probs=69.1
Q ss_pred ccCCeEEEEEe-cCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEEec
Q 002272 10 VHEGKLLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNK 86 (944)
Q Consensus 10 ~~~~~m~V~~A-~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVfdR 86 (944)
...+.|+|++. .+|+++.+++.+..||.+||+.|+..+|||++.|.|++.|..|++..+|.+|++. +..+|+|.-|
T Consensus 229 ~~~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~-~gstL~LvlR 305 (307)
T 3ai5_A 229 GITGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ-KESTLHLVLR 305 (307)
T ss_dssp SSCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCC-TTCEEEEEC-
T ss_pred CCCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCHHHcCCC-CCCEEEEEEe
Confidence 45678999998 5899999999999999999999999999999999999999999999999999998 7788998765
No 80
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.80 E-value=2.6e-05 Score=70.31 Aligned_cols=69 Identities=9% Similarity=0.084 Sum_probs=58.3
Q ss_pred eEEEEEe-cCCceE--Ee-cCCCCCCHHHHHHHHHHH-hCCCCCCeEEeec--CccccccchhccccCCCCCceEEE
Q 002272 14 KLLVHIS-ENGHSF--EL-DCNENSPVEAVMRFIESA-AGINFNDQLVLCL--DMKLEPQKLLSAYRLPSDDKEVFI 83 (944)
Q Consensus 14 ~m~V~~A-~tG~sl--~l-d~~~f~sVe~LK~~Ia~~-~gIp~~~QILL~~--G~kL~~~~~L~~y~l~td~~eIyV 83 (944)
.|+|++. .+|..+ .+ ++.+..||.+||+.|+.. .|||++.|.|++. |..|++..+|.+|++. +..+||+
T Consensus 10 ~M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~-~~stl~~ 85 (88)
T 2dzj_A 10 HYEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVG-TTATLYF 85 (88)
T ss_dssp CEEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCC-SEEEEEE
T ss_pred EEEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCC-CCCEEEE
Confidence 4999997 677664 47 788899999999999995 8999999999766 7788899999999988 5667665
No 81
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=97.78 E-value=6.1e-05 Score=70.16 Aligned_cols=71 Identities=13% Similarity=0.247 Sum_probs=60.4
Q ss_pred eEEEEEe-cCCceEEecCC-CCCCHHHHHHHHHHHhCCCCCCeEEeecCc-----------c----ccccchhccccCCC
Q 002272 14 KLLVHIS-ENGHSFELDCN-ENSPVEAVMRFIESAAGINFNDQLVLCLDM-----------K----LEPQKLLSAYRLPS 76 (944)
Q Consensus 14 ~m~V~~A-~tG~sl~ld~~-~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~-----------k----L~~~~~L~~y~l~t 76 (944)
.|+|++. .+|.. .+++. +..+|.+||+.|+..+|||++.|.|.+.|. . +++..+|..||+.
T Consensus 7 ~M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~- 84 (107)
T 1wf9_A 7 GTMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLA- 84 (107)
T ss_dssp CEEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCC-
T ss_pred eEEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCC-
Confidence 3999996 68865 68888 889999999999999999999999966555 3 4788899999998
Q ss_pred CCceEEEEec
Q 002272 77 DDKEVFIFNK 86 (944)
Q Consensus 77 d~~eIyVfdR 86 (944)
+...|||.+.
T Consensus 85 ~G~~L~l~~~ 94 (107)
T 1wf9_A 85 HGSMVYLAYE 94 (107)
T ss_dssp TTCEEECCCS
T ss_pred CCCEEEEEeC
Confidence 7788998776
No 82
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=97.76 E-value=4.1e-05 Score=68.79 Aligned_cols=71 Identities=10% Similarity=0.076 Sum_probs=57.9
Q ss_pred EEEEec---CCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEee-------cCccccccchhccccCCCCCceEEEEe
Q 002272 16 LVHISE---NGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLC-------LDMKLEPQKLLSAYRLPSDDKEVFIFN 85 (944)
Q Consensus 16 ~V~~A~---tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~-------~G~kL~~~~~L~~y~l~td~~eIyVfd 85 (944)
.|.+.| .++.+..-+....||++||+.|+..+|||++.|.|++ .|..+++.++|.+|++. +..+|+|-|
T Consensus 4 ~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~-~g~~ihlvd 82 (86)
T 4b6w_A 4 KVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCR-DEFVIHVVD 82 (86)
T ss_dssp EEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCC-TTCEEEEEE
T ss_pred EEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCC-CCCEEEEEe
Confidence 444543 3344566677889999999999999999999999964 36678899999999998 899999988
Q ss_pred cc
Q 002272 86 KL 87 (944)
Q Consensus 86 Rr 87 (944)
++
T Consensus 83 ~~ 84 (86)
T 4b6w_A 83 LQ 84 (86)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 83
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=97.75 E-value=4.1e-05 Score=73.62 Aligned_cols=76 Identities=14% Similarity=0.199 Sum_probs=64.5
Q ss_pred CeEEEEEe-cCCceE-EecCCCCCCHHHHHHHHHHHh-----CCCC--CCeEEeecCccccccchhccccCCCCC-----
Q 002272 13 GKLLVHIS-ENGHSF-ELDCNENSPVEAVMRFIESAA-----GINF--NDQLVLCLDMKLEPQKLLSAYRLPSDD----- 78 (944)
Q Consensus 13 ~~m~V~~A-~tG~sl-~ld~~~f~sVe~LK~~Ia~~~-----gIp~--~~QILL~~G~kL~~~~~L~~y~l~td~----- 78 (944)
..|+|++. .+|..+ .+++.+.+||.+||+.|+..| |||+ +.|.|+++|..|++..+|++|++...+
T Consensus 15 ~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v 94 (126)
T 1se9_A 15 NQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAV 94 (126)
T ss_dssp CCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCC
T ss_pred ccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCc
Confidence 57889886 799888 689999999999999997665 6986 799999999999999999999998432
Q ss_pred ceEEEEeccc
Q 002272 79 KEVFIFNKLR 88 (944)
Q Consensus 79 ~eIyVfdRrl 88 (944)
.+++|..|..
T Consensus 95 ~tmhlVlrl~ 104 (126)
T 1se9_A 95 TTMHVIIQAP 104 (126)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEeccC
Confidence 5778777654
No 84
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.72 E-value=6.5e-05 Score=71.14 Aligned_cols=77 Identities=10% Similarity=0.038 Sum_probs=67.6
Q ss_pred ccCCeEEEEE--ecCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEEecc
Q 002272 10 VHEGKLLVHI--SENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKL 87 (944)
Q Consensus 10 ~~~~~m~V~~--A~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVfdRr 87 (944)
+....+.|-+ ...|+.+.+++....+|.+||+.|+..++||++.|.|+++|+-|.+.++|..||+. +..+|+|--+.
T Consensus 11 ~~~~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk-~g~TIhLvi~s 89 (118)
T 2daf_A 11 VEDSLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETLVQHGVK-PQEIVQVEIFS 89 (118)
T ss_dssp CCSSCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCHHHHSCC-SSCEEEEEEEE
T ss_pred ccCccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchHHHcCCC-CCCEEEEEEec
Confidence 3455566664 57899999999999999999999999999999999999999999999999999998 78889887654
No 85
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=97.71 E-value=0.00012 Score=82.36 Aligned_cols=77 Identities=13% Similarity=0.247 Sum_probs=66.1
Q ss_pred CCeEEEEEe-cCCceEEecCCCCCCHHHHHHHHHH---HhCCCCCCeEEeecCccccccchhccccCCCCCceE-EEEec
Q 002272 12 EGKLLVHIS-ENGHSFELDCNENSPVEAVMRFIES---AAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEV-FIFNK 86 (944)
Q Consensus 12 ~~~m~V~~A-~tG~sl~ld~~~f~sVe~LK~~Ia~---~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eI-yVfdR 86 (944)
+..|+|++. .+|+++.+++....||.+||..|+. ++|||++.|.|++.|..|++..+|..|++. +...| ++..|
T Consensus 5 ~~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL~dygI~-~gstIv~lv~k 83 (368)
T 1oqy_A 5 SSAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRID-EKNFVVVMVTK 83 (368)
T ss_dssp -CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBTTTTCCC-TTSCEEEEEEC
T ss_pred CceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCHHHcCCC-CCCEEEEEEec
Confidence 346999997 5799999999999999999999999 567999999999999999999999999998 55666 66666
Q ss_pred ccc
Q 002272 87 LRL 89 (944)
Q Consensus 87 rll 89 (944)
..-
T Consensus 84 ~~~ 86 (368)
T 1oqy_A 84 TKA 86 (368)
T ss_dssp CCS
T ss_pred CCC
Confidence 543
No 86
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=97.66 E-value=0.0001 Score=70.30 Aligned_cols=72 Identities=13% Similarity=0.170 Sum_probs=61.0
Q ss_pred eEEEEEecCCc--eEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecC--cc-----ccccchhccccCCCCCceEEEE
Q 002272 14 KLLVHISENGH--SFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLD--MK-----LEPQKLLSAYRLPSDDKEVFIF 84 (944)
Q Consensus 14 ~m~V~~A~tG~--sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G--~k-----L~~~~~L~~y~l~td~~eIyVf 84 (944)
.+.|++.+.+. .+.+++.+..||.+||..|+..+|||++.|.|++.| ++ +++..+|.+||+. +..+|||-
T Consensus 6 ~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~-~g~~ihvv 84 (122)
T 1t0y_A 6 VYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVR-DGYRIHAV 84 (122)
T ss_dssp EEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCC-SSEEEEEE
T ss_pred EEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCC-CCCEEEEE
Confidence 47787877666 678888899999999999999999999999997765 23 3688999999998 78999999
Q ss_pred ec
Q 002272 85 NK 86 (944)
Q Consensus 85 dR 86 (944)
+.
T Consensus 85 d~ 86 (122)
T 1t0y_A 85 DV 86 (122)
T ss_dssp EC
T ss_pred eC
Confidence 84
No 87
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=97.65 E-value=0.0023 Score=77.22 Aligned_cols=312 Identities=14% Similarity=0.148 Sum_probs=174.1
Q ss_pred eEEEEEecCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeec-Cccccccchhccc---c-----CCCCCceEEEE
Q 002272 14 KLLVHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCL-DMKLEPQKLLSAY---R-----LPSDDKEVFIF 84 (944)
Q Consensus 14 ~m~V~~A~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~-G~kL~~~~~L~~y---~-----l~td~~eIyVf 84 (944)
.+.+|+..+++...+.+.+..++.+|+.+|.+.||||..+|.++.+ |..+.+......+ + ...+..-||+|
T Consensus 312 il~~f~~~~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (676)
T 3qa8_A 312 LLSVMNMVSGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQYVIDCTVIDGRQGEGDLIFLF 391 (676)
T ss_dssp EEECCCSSSSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGSCCCSCC-------CCCEEEC
T ss_pred ccccccccccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhheeccccccccCCCCceEEEE
Confidence 3578888999999999999999999999999999999999999887 5566665444432 1 23467899999
Q ss_pred eccccCCCC---CCCCCCcccccccCCCCCCCCCCCCCCCCCCCChhhhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002272 85 NKLRLQSNS---PPPSPEQVDVLEVADPPPPALSQDPHPLDDAPDPALKALPSYERQFRYHYHRGHAIYIRTQAKIEMCE 161 (944)
Q Consensus 85 dRrll~~~~---~~p~~e~~~i~e~~ipp~p~~~~~pspL~da~~p~lraL~sye~lf~~~l~wA~al~~da~~~~e~ce 161 (944)
|+....... +++.|+.+..-.. .|.. .|. -+. + +.-||+++.-. .
T Consensus 392 ~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~--------~~~---~~~---~---------~~~~~~~~~~~--------~ 439 (676)
T 3qa8_A 392 DNRKTVYEPQISLPAHPESVSIVLQ-DPKR--------PLT---YTH---L---------RRVWGQIWQTI--------R 439 (676)
T ss_dssp SSCC------CCCCCCCCCHHHHHH-TTCC--------CCC---CSC---C---------TTHHHHHHHHH--------H
T ss_pred ecccccccCCCCCCCCChHHHHHHh-hhhh--------cCC---HHH---H---------HHHHHHHHHHH--------H
Confidence 996554221 1223332111000 1110 000 011 1 23466666433 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhCCCCCccccccccccccccc
Q 002272 162 RLLREQKVQERAVEVGRGNLEQYYRVINQNYNDFMKRYSQQQRVHSDLLANFGRDIEKLRSVKLHPSLQTATCKCLLDFV 241 (944)
Q Consensus 162 ~Lv~Ei~vq~raL~aAvaNLe~~~~~lek~f~~f~~~f~~ll~~~~~LL~~we~dLe~Lr~IpVhpaL~~ee~kTL~DfV 241 (944)
.+..+-.-+++|-.||+-||-.|-..+.+.-+......+++..+++=.-..+.-||+.-.. +..-+ -.
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~-~~ 507 (676)
T 3qa8_A 440 ALKEDCARLLQGQRTSMVNLLRYNTELSKKKNSMTSECEQLKAKLDFFRSSIQIDLEKYSE-----------QMEFG-IT 507 (676)
T ss_dssp HHHHHHHHHHHHHHHHTSSHHHHHHTTTTGGGTHHHHHHHHHHHHHHHHHHHHHHHHHTTS-----------CSSSC-CC
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-----------HHhcC-Cc
Confidence 3445556677888999999999999999998888888888777776666666677776544 12222 23
Q ss_pred ChhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhccC-CchhhhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 002272 242 KEEHLRKSAETCSSS-HRQFENKVSQFKQIFDDVKRRVEELLNTRAS-LPIKNLEMMIKEHQRFINEQKSIMQSLSKDVS 319 (944)
Q Consensus 242 d~e~Lrk~ae~C~~s-~~~f~~Kl~~Lk~~i~~Ik~~vd~L~~~~~~-~s~~~Le~~i~e~~~Ll~eq~siaQ~LssD~e 319 (944)
++.-++.|.+-=... +....+++..+...+-.+..+|-+|-..+-. -....++.+ + ++-...|.
T Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~---~~~~~~~~ 573 (676)
T 3qa8_A 508 SEKLLSAWREMEQAVELCGREREVQALVDKMMALQTDSVDLQRNPLGRKHRGTLDDL-----------E---EQARDLYR 573 (676)
T ss_dssp CSHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHTHHHHTTTTTTCC-------CHHHH-----------H---HHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhhhccCchhcccccHHHHH-----------H---HHHHHHHH
Confidence 334445554421111 1111235566666666666665444222100 001112111 1 11112233
Q ss_pred HHHhhhhhhccccccCCCCCCccccccCcchhhhhccchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002272 320 TVKKLVDDCLSCQLSSSLRPHDAVSALGPMYDVHDKSHLPRMQACDRSISKLLDFCQDKKNEMNVFVHNYMQKITYVSYV 399 (944)
Q Consensus 320 ~v~~l~D~~v~~~lsss~~~~d~vS~Ls~m~e~H~kelLP~L~~~~~eL~d~l~~~~~~KneL~~~~~~~Lr~Is~IQs~ 399 (944)
.+.+...+ +..- .. ..+|-.++.++.+......+.++.+|..|...-.+
T Consensus 574 ~~~~~~~~------------~~~~-------~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (676)
T 3qa8_A 574 RLRERPRD------------QRTP-------GD------------SNDMVRLLILAIQSFEKRVILIYDQLSKTVVCKRK 622 (676)
T ss_dssp HHHHSCST------------TCCS-------CC------------CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCcc------------cCCC-------cc------------hHHHHHHHHHHHHhhhHHHHHHHHHhhHHHHHHHH
Confidence 33222111 1000 00 01244455666667777777888888887777777
Q ss_pred HHHHhhhHHHHHHHH
Q 002272 400 IKDAKLQFPVFREAM 414 (944)
Q Consensus 400 I~evk~~L~~l~e~L 414 (944)
+.++-.++..+-+.+
T Consensus 623 ~~~~~~~~~~~~~~~ 637 (676)
T 3qa8_A 623 ALELSPKVKEVMNLM 637 (676)
T ss_dssp HHHTTTHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHH
Confidence 777666665544444
No 88
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=97.64 E-value=7e-06 Score=84.01 Aligned_cols=67 Identities=15% Similarity=0.205 Sum_probs=0.0
Q ss_pred EEEEEe-cCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEEecc
Q 002272 15 LLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKL 87 (944)
Q Consensus 15 m~V~~A-~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVfdRr 87 (944)
|+||+. .+|.++.+++.+.+||.+||..|+..+|||+++|.|++.|..|++..+|. +.++|+|.-|-
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TLs------~~STLhLvlRL 68 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELVT------DDVTYYLSLKL 68 (189)
T ss_dssp --------------------------------------------------------------------------
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCccc------CCCEEEEEEec
Confidence 789997 68999999999999999999999999999999999999999999988885 56788888753
No 89
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=97.57 E-value=0.00017 Score=65.78 Aligned_cols=78 Identities=8% Similarity=0.221 Sum_probs=70.4
Q ss_pred cCCeEEEEEe-cCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEEecccc
Q 002272 11 HEGKLLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKLRL 89 (944)
Q Consensus 11 ~~~~m~V~~A-~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVfdRrll 89 (944)
.+..|+|.+. .+|..+.+.+.+.+++..|+..++++.|||++.|.|++.|.+|.+.++...|++. +...|.||-+..=
T Consensus 4 ~~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~me-dgD~Idv~~~~~G 82 (94)
T 2io1_B 4 MNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEME-DEDTIDVFQQQTG 82 (94)
T ss_dssp --CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCC-TTCEEEEEECCEE
T ss_pred CCCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCC-CCCEEEEEEeccC
Confidence 3467999998 6999999999999999999999999999999999999999999999999999998 8889999987543
No 90
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=97.54 E-value=0.0001 Score=65.77 Aligned_cols=70 Identities=14% Similarity=0.174 Sum_probs=57.2
Q ss_pred EEEEEe-cCCceEEec-CCCCCCHHHHHHHHHHHhCCCCCCeEEeec--Ccccc---ccchhccccCCCCCceEEEEec
Q 002272 15 LLVHIS-ENGHSFELD-CNENSPVEAVMRFIESAAGINFNDQLVLCL--DMKLE---PQKLLSAYRLPSDDKEVFIFNK 86 (944)
Q Consensus 15 m~V~~A-~tG~sl~ld-~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~--G~kL~---~~~~L~~y~l~td~~eIyVfdR 86 (944)
|+|.+. .+|..+ +. +.+..||.+||++|++.+|||++.|.|+++ +..++ +..+|..||+. ....|||-++
T Consensus 1 m~i~vr~~~G~~~-v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~-~g~~l~v~~~ 77 (86)
T 2kzr_A 1 WRVRCKAKGGTHL-LQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQ-SGDMLIVEED 77 (86)
T ss_dssp CCEEEEETTEEEE-ECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCC-TTCEEECCCC
T ss_pred CEEEEEcCCCCEE-eeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCC-CCCEEEEEeC
Confidence 567775 688655 66 888999999999999999999999999876 35553 57899999998 5677888765
No 91
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=97.49 E-value=0.0001 Score=81.33 Aligned_cols=71 Identities=15% Similarity=0.207 Sum_probs=63.1
Q ss_pred CeEEEEEecCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEe---ecCccccccchhccccCCCCCceEEEE
Q 002272 13 GKLLVHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVL---CLDMKLEPQKLLSAYRLPSDDKEVFIF 84 (944)
Q Consensus 13 ~~m~V~~A~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL---~~G~kL~~~~~L~~y~l~td~~eIyVf 84 (944)
..+.|.+.++|+++.+++.+..||.+||+.|+..+|||++.|.|+ +.|+.|.+..+|+.|++. +..+|+|.
T Consensus 4 ~~i~i~Vk~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik-~g~~l~L~ 77 (320)
T 3shq_A 4 KEVVVIVKWSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADNVKISALELK-PNFKLMMV 77 (320)
T ss_dssp CEEEEEEEETTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC---CEEEEE
T ss_pred ceEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCccccHHHcCCC-CCCEEEEE
Confidence 357888889999999999999999999999999999999999998 778889999999999987 67788776
No 92
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=97.40 E-value=0.00047 Score=59.58 Aligned_cols=69 Identities=9% Similarity=0.267 Sum_probs=63.7
Q ss_pred EEEEEe-cCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEE
Q 002272 15 LLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIF 84 (944)
Q Consensus 15 m~V~~A-~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVf 84 (944)
|+|.+. .+|..+.+.+.+.+++..|+...+++.|||+..+.|++.|.+|.+.++...|++. +...|.||
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~me-dgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEME-DEDTIDVF 71 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTTCCTTTTTCC-TTEEEEEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCC-CCCEEEEE
Confidence 677886 6999999999999999999999999999999999999999999999999999988 77778776
No 93
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=97.37 E-value=0.00058 Score=63.79 Aligned_cols=76 Identities=9% Similarity=0.214 Sum_probs=69.5
Q ss_pred cCCeEEEEEecCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEEecc
Q 002272 11 HEGKLLVHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKL 87 (944)
Q Consensus 11 ~~~~m~V~~A~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVfdRr 87 (944)
.+..|+|.+..+|..+.|.+...+.+..|+..++++.||+++.+.|++.|.+|.+.++...|++. +...|.||-+.
T Consensus 28 ~~~~I~IkV~~~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~me-dgD~Idv~~~q 103 (106)
T 2eke_C 28 PETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDME-DNDIIEAHREQ 103 (106)
T ss_dssp CCSEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCC-TTEEEEEEECC
T ss_pred CCCeEEEEEecCCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCCCCHHHcCCC-CCCEEEEEeec
Confidence 44679999976999999999999999999999999999999999999999999999999999988 78889998764
No 94
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=97.34 E-value=0.0006 Score=61.88 Aligned_cols=76 Identities=8% Similarity=0.252 Sum_probs=69.1
Q ss_pred CCeEEEEEe-cCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEEeccc
Q 002272 12 EGKLLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKLR 88 (944)
Q Consensus 12 ~~~m~V~~A-~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVfdRrl 88 (944)
+..|+|.+. .+|..+.+.+.+.+++..|+..++++.|||+..+.|++.|.+|.+.++...|++. +...|.||-+..
T Consensus 3 ~~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~me-dgD~Idv~~~q~ 79 (91)
T 2io0_B 3 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEME-DEDTIDVFQQQT 79 (91)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTTCCTTTTTCC-TTEEEEEEECCC
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCC-CCCEEEEEEecc
Confidence 457899997 6999999999999999999999999999999999999999999999999999998 888999997643
No 95
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=97.31 E-value=0.00074 Score=59.52 Aligned_cols=72 Identities=18% Similarity=0.301 Sum_probs=65.9
Q ss_pred CCeEEEEEe-cCCc-eEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEE
Q 002272 12 EGKLLVHIS-ENGH-SFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIF 84 (944)
Q Consensus 12 ~~~m~V~~A-~tG~-sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVf 84 (944)
+..|+|.+. .+|. .+.+.+...+++..|+..++++.|||++.+.|++.|.+|.+.++...|++. +...|.||
T Consensus 5 ~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~me-dgD~Idv~ 78 (79)
T 3a4r_A 5 SQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGKELPADLGLE-SGDLIEVW 78 (79)
T ss_dssp CCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSCCCHHHHTCC-TTCEEEEE
T ss_pred CCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCC-CCCEEEEe
Confidence 457999997 5895 899999999999999999999999999999999999999999999999988 77888887
No 96
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=97.23 E-value=0.00084 Score=63.07 Aligned_cols=74 Identities=12% Similarity=0.150 Sum_probs=68.4
Q ss_pred CeEEEEEe-cCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEEecc
Q 002272 13 GKLLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKL 87 (944)
Q Consensus 13 ~~m~V~~A-~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVfdRr 87 (944)
..|+|.+. .+|..+.|.+...+++..|+..++++.|||+..|.|++.|.+|.+.++...|++. +...|.||-+.
T Consensus 25 ~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mE-DgD~Idv~~~q 99 (110)
T 2k8h_A 25 ALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDETKTPEELGME-DDDVIDAMVEQ 99 (110)
T ss_dssp CCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSSSHHHHHHCS-SEEEEEEECCC
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCCCCHHHcCCC-CCCEEEEEEcc
Confidence 46999997 6999999999999999999999999999999999999999999999999999998 78889988764
No 97
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=97.23 E-value=0.00086 Score=60.97 Aligned_cols=76 Identities=8% Similarity=0.258 Sum_probs=68.9
Q ss_pred cCCeEEEEEe-cCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEEecc
Q 002272 11 HEGKLLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKL 87 (944)
Q Consensus 11 ~~~~m~V~~A-~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVfdRr 87 (944)
.+..|+|.+. .+|..+.+.+...+++..|+..++++.|||++.+.|++.|.+|.+..+...|++. +...|.||-+.
T Consensus 14 ~~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~me-dgD~Idv~~~q 90 (93)
T 2d07_B 14 NNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEME-DEDTIDVFQQQ 90 (93)
T ss_dssp -CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTTCCTTTTTCC-TTEEEEEEECC
T ss_pred CCCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCCCCHHHcCCC-CCCEEEEEeec
Confidence 3568999997 6999999999999999999999999999999999999999999999999999998 78889998764
No 98
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=97.14 E-value=0.0012 Score=61.38 Aligned_cols=76 Identities=8% Similarity=0.252 Sum_probs=69.6
Q ss_pred CCeEEEEEe-cCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEEeccc
Q 002272 12 EGKLLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKLR 88 (944)
Q Consensus 12 ~~~m~V~~A-~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVfdRrl 88 (944)
+..|+|.+. .+|..+.|.+...+++..|+..++++.|||+..+.|++.|.+|.+.++...|++. +...|.||-+..
T Consensus 22 ~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~me-dgD~Idv~~~q~ 98 (104)
T 1wz0_A 22 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEME-DEDTIDVFQQQT 98 (104)
T ss_dssp SCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTTSCTTTTTCC-TTEEEEECCCCC
T ss_pred CCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCC-CCCEEEEEEecc
Confidence 458999997 5999999999999999999999999999999999999999999999999999998 788999987643
No 99
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=96.47 E-value=0.0058 Score=55.49 Aligned_cols=71 Identities=13% Similarity=0.174 Sum_probs=57.6
Q ss_pred EEEEEe----cCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeec-C----c--cc-cccchhccccCCCCCceEE
Q 002272 15 LLVHIS----ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCL-D----M--KL-EPQKLLSAYRLPSDDKEVF 82 (944)
Q Consensus 15 m~V~~A----~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~-G----~--kL-~~~~~L~~y~l~td~~eIy 82 (944)
+.|.+. .+|+.+...+....||.+||..|+..+|||+..|.|... + . .| ++..+|.+|++. +..+|+
T Consensus 10 v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~-~G~~I~ 88 (97)
T 1wjn_A 10 LTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVE-NGDCLL 88 (97)
T ss_dssp EEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCC-TTCEEE
T ss_pred EEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCC-CCCEEE
Confidence 555553 478898888888999999999999999999999999543 1 1 24 667899999998 788999
Q ss_pred EEec
Q 002272 83 IFNK 86 (944)
Q Consensus 83 VfdR 86 (944)
|-+.
T Consensus 89 V~d~ 92 (97)
T 1wjn_A 89 VRWS 92 (97)
T ss_dssp EECC
T ss_pred EEec
Confidence 9874
No 100
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=95.88 E-value=0.026 Score=53.35 Aligned_cols=75 Identities=4% Similarity=0.140 Sum_probs=67.4
Q ss_pred CCeEEEEEe-cCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEEecc
Q 002272 12 EGKLLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKL 87 (944)
Q Consensus 12 ~~~m~V~~A-~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVfdRr 87 (944)
+..+.|.+. .+|..+.|.+...+.+..|+...+++.|||+..+.|++.|.+|.+..+...+++. +...|.||-+.
T Consensus 38 ~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~~TP~dL~ME-DgD~IdV~~~Q 113 (115)
T 3kyd_D 38 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNHTPKELGME-EEDVIEVYQEQ 113 (115)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTTCCTTTTTCC-TTCEEEEEECC
T ss_pred CCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCCCCHHHcCCC-CCCEEEEEeec
Confidence 357888887 5899999999999999999999999999999999999999999999999999998 78889988654
No 101
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=95.72 E-value=0.025 Score=58.41 Aligned_cols=77 Identities=9% Similarity=0.187 Sum_probs=70.2
Q ss_pred CCeEEEEEecCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEEecccc
Q 002272 12 EGKLLVHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKLRL 89 (944)
Q Consensus 12 ~~~m~V~~A~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVfdRrll 89 (944)
+..++|.+..+|..+.|.+...+.+..|+...+++.|||...+.|++.|.++.+.++...+++. +...|.||-...-
T Consensus 27 ~~~I~LkV~~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~ME-dgD~Idv~~~q~g 103 (200)
T 3pge_A 27 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDME-DNDIIEAHREQIG 103 (200)
T ss_dssp CCCEEEEEECSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTTCCTTTTTCC-TTEEEEEEECCSC
T ss_pred CCeEEEEEecCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCCCCHHHcCCC-CCCEEEEEeccCc
Confidence 4568888888999999999999999999999999999999999999999999999999999998 7888999987654
No 102
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=95.10 E-value=0.036 Score=56.73 Aligned_cols=77 Identities=9% Similarity=0.184 Sum_probs=70.0
Q ss_pred CCeEEEEEecCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEEecccc
Q 002272 12 EGKLLVHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKLRL 89 (944)
Q Consensus 12 ~~~m~V~~A~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVfdRrll 89 (944)
+..+.|.+..+|..+.|.+...+.+..|+...+++.|||+..+.|++.|.++.+.++...+++. +..+|.||-+..=
T Consensus 55 ~e~InLKVk~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~ddTPeDLdME-DGDtIDV~leQ~G 131 (207)
T 3tix_A 55 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQADQTPEDLDME-DNDIIEAHREQIG 131 (207)
T ss_dssp CCEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSSCCTTTTTCC-TTEEEEECCCCCT
T ss_pred CCcEEEEEecCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCCCCHHHcCCC-CCCEEEEEEeccC
Confidence 3468888888999999999999999999999999999999999999999999999999999998 7888999976644
No 103
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=92.41 E-value=0.024 Score=58.73 Aligned_cols=76 Identities=9% Similarity=0.208 Sum_probs=0.0
Q ss_pred CCeEEEEEecCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEEeccc
Q 002272 12 EGKLLVHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKLR 88 (944)
Q Consensus 12 ~~~m~V~~A~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVfdRrl 88 (944)
+..|.|.+..+|..+.|.+...+.+..|+...+++.|||+..+.|++.|.++.+.++...+++. +..+|.||-...
T Consensus 19 ~e~InLKV~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dddTPadL~ME-DGDtIDV~leQ~ 94 (227)
T 3v7o_A 19 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDME-DNDIIEAHREQI 94 (227)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred CCeEEEEEeCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCCCCHHHcCCC-CCCEEEEEeccc
Confidence 4578888878999999999999999999999999999999999999999999999999999988 778888886543
No 104
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=91.96 E-value=0.51 Score=43.23 Aligned_cols=78 Identities=14% Similarity=0.243 Sum_probs=64.1
Q ss_pred ccccccCCeEEEEEe-cCC-ceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEE
Q 002272 6 TEVLVHEGKLLVHIS-ENG-HSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFI 83 (944)
Q Consensus 6 ~~~~~~~~~m~V~~A-~tG-~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyV 83 (944)
+.....+..+.|-+. .+| +.+.+-+...+.+..|...-+++.|+++..-.|++.|.++.+.++...+++. +...|-|
T Consensus 17 ~~~~~~~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~~TP~dLdME-DgD~IDv 95 (97)
T 2jxx_A 17 RGSTETSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGRELPADLGME-SGDLIEV 95 (97)
T ss_dssp ---CCSCSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSCSCHHHHTCC-TTEEEEE
T ss_pred CCCCCCCCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCCCCHHHcCCC-CCCEEEE
Confidence 334445567888776 477 4788888999999999999999999999988889999999999999999988 6777877
Q ss_pred E
Q 002272 84 F 84 (944)
Q Consensus 84 f 84 (944)
|
T Consensus 96 ~ 96 (97)
T 2jxx_A 96 W 96 (97)
T ss_dssp E
T ss_pred e
Confidence 6
No 105
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=89.97 E-value=0.44 Score=41.89 Aligned_cols=69 Identities=10% Similarity=0.225 Sum_probs=49.7
Q ss_pred EEEEEecCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecC---ccc--cccchhccccCCCCCceEEEE
Q 002272 15 LLVHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLD---MKL--EPQKLLSAYRLPSDDKEVFIF 84 (944)
Q Consensus 15 m~V~~A~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G---~kL--~~~~~L~~y~l~td~~eIyVf 84 (944)
|.|=+..-+.+..+++.+..++.+|+..|++.++||++.|-+..+- +.| .+..++..+|+. ....|||.
T Consensus 5 m~lRvrs~~G~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~-hGd~l~l~ 78 (80)
T 2pjh_A 5 IIIRVQSPDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIK-HGDLLFLF 78 (80)
T ss_dssp CCCEEECSSEEEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCC-TTCCEEC-
T ss_pred EEEEEECCCCCEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCC-CCCEEEEe
Confidence 4454544444777888899999999999999999999888885552 223 256678888876 35566653
No 106
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=88.11 E-value=1.6 Score=39.74 Aligned_cols=74 Identities=14% Similarity=0.161 Sum_probs=63.6
Q ss_pred cCCeEEEEEecCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEEe
Q 002272 11 HEGKLLVHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFN 85 (944)
Q Consensus 11 ~~~~m~V~~A~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVfd 85 (944)
.+..+.|-+...|..+.|-+...+.++.|...-+++.|++++..+||+.|.++.+.++-..+++. +.-.|-+|-
T Consensus 18 ~~~~IniKV~~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~~TP~~L~me-D~DiID~~~ 91 (95)
T 2l76_A 18 TPRLFPLKIRCRADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPTATPRTLKLG-VADIIDCVV 91 (95)
T ss_dssp CCCCEEEEEECSSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTTSCHHHHTCC-SSCEEEEEE
T ss_pred CCCeEEEEEEcCCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCCCCHhHcCCC-CCCEEEEEE
Confidence 34457777778899999999999999999999999999999888889999999999888888887 556666653
No 107
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=88.08 E-value=1.1 Score=49.67 Aligned_cols=74 Identities=11% Similarity=0.192 Sum_probs=61.6
Q ss_pred EEEEEecCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCc--cccccchhccccCCCCCceEEEEeccc
Q 002272 15 LLVHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDM--KLEPQKLLSAYRLPSDDKEVFIFNKLR 88 (944)
Q Consensus 15 m~V~~A~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~--kL~~~~~L~~y~l~td~~eIyVfdRrl 88 (944)
.+++...+-....+......++.+|++.|+..+||++.+|.||..++ .+++......|..++..+||++|++..
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (396)
T 4eut_A 313 IHVFSLQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVSREG 388 (396)
T ss_dssp EEEEETTTTEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBTTSSCCCCSSSCEEEEECC-
T ss_pred EEEEEeccceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCccccCCCCCCCCCeEEEecCC
Confidence 46777778888888888899999999999999999999999998864 346667777787777899999998753
No 108
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=87.53 E-value=1.2 Score=45.83 Aligned_cols=78 Identities=9% Similarity=0.180 Sum_probs=66.5
Q ss_pred cCCeEEEEEecCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEEecccc
Q 002272 11 HEGKLLVHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKLRL 89 (944)
Q Consensus 11 ~~~~m~V~~A~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVfdRrll 89 (944)
...++.|.+..+|..+.|.+...+.+..|+...+++.|+|.+.+.|++.|.++...++-..+... +...|=||-+..-
T Consensus 18 ~~~~i~ikv~~~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~e-d~d~I~~~~eq~G 95 (209)
T 3uf8_A 18 PETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDME-DNDIIEAHREQIG 95 (209)
T ss_dssp CCSEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTTCCTTTTTCC-TTEEEEEECSCTT
T ss_pred CCCcEEEEEEcCCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCCCChHHhhhc-ccccchhhccccc
Confidence 34578888888999999999999999999999999999999999999999999888888777766 6677777766443
No 109
>4hpq_C ATG17, KLTH0D15642P; autophagy, protein transport; 3.06A {Lachancea thermotolerans cbs 6340}
Probab=86.59 E-value=49 Score=37.60 Aligned_cols=17 Identities=35% Similarity=0.350 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHhhccC
Q 002272 468 VEVRRREEFLKANSVYI 484 (944)
Q Consensus 468 eE~krRe~F~k~fG~~L 484 (944)
.|+.||+.+.+.+.+++
T Consensus 343 ~Ev~RRr~~~~~~~~i~ 359 (413)
T 4hpq_C 343 KEVKRRKETAAKLSQIL 359 (413)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 38999999999887776
No 110
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=81.52 E-value=0.29 Score=54.63 Aligned_cols=74 Identities=8% Similarity=0.209 Sum_probs=0.0
Q ss_pred CeEEEEEecCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEEecc
Q 002272 13 GKLLVHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKL 87 (944)
Q Consensus 13 ~~m~V~~A~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVfdRr 87 (944)
..+.|.+..+|..+.+.+...+.+..|+...+++.|+++..+.|++.|.++.+.++..++++. +..+|-||-+.
T Consensus 20 ~~I~LKV~~~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~ME-DgD~Idv~~~Q 93 (360)
T 3ix6_A 20 THINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDME-DNDIIEAHREQ 93 (360)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred CeEEEEEecCCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCCCChHHcCCC-ccchhhhhhcc
Confidence 467777777899999999999999999999999999999999999999999999999999888 66777777653
No 111
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=73.41 E-value=0.69 Score=51.90 Aligned_cols=76 Identities=8% Similarity=0.174 Sum_probs=0.0
Q ss_pred CeEEEEEecCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCCCCceEEEEecccc
Q 002272 13 GKLLVHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPSDDKEVFIFNKLRL 89 (944)
Q Consensus 13 ~~m~V~~A~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~td~~eIyVfdRrll 89 (944)
..+.|.+..+|..+.|.+...+.+..|+...+++.|+|...+.|++.|.++.+.++-..+++. +.-.|-||-+..=
T Consensus 29 ~~i~lkv~~~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~me-d~d~i~~~~~q~g 104 (389)
T 4da1_A 29 THINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQAPEDLDME-DNDIIEAHREQIG 104 (389)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred CcEEEEEecCCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCCCCHHHcCCC-CCCEeeeeecccc
Confidence 456677777899999999999999999999999999999999999999999999999999888 6677777766553
No 112
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=71.96 E-value=14 Score=32.54 Aligned_cols=60 Identities=15% Similarity=0.226 Sum_probs=50.2
Q ss_pred cCCceEEecCCCCCCHHHHHHHHHHHhCCCCC-CeEEeecCccccccchhccccCCCCCceE
Q 002272 21 ENGHSFELDCNENSPVEAVMRFIESAAGINFN-DQLVLCLDMKLEPQKLLSAYRLPSDDKEV 81 (944)
Q Consensus 21 ~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~-~QILL~~G~kL~~~~~L~~y~l~td~~eI 81 (944)
.-..-+.+.+...++|..|-..-..+.|||.+ ...|++-|.+|.+..++..|.+. |.-.|
T Consensus 17 ~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~Dleme-D~D~I 77 (82)
T 3goe_A 17 SKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELE-DEDQV 77 (82)
T ss_dssp SSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCC-TTCEE
T ss_pred cCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCc-CCcee
Confidence 34445677777889999999999999999999 88889999999999999999987 44444
No 113
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=70.92 E-value=99 Score=35.95 Aligned_cols=29 Identities=10% Similarity=-0.024 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002272 173 AVEVGRGNLEQYYRVINQNYNDFMKRYSQ 201 (944)
Q Consensus 173 aL~aAvaNLe~~~~~lek~f~~f~~~f~~ 201 (944)
-+.-.+..|...+..+++++.+...+|+.
T Consensus 61 DltkrINELKnqLEdlsKnsKdseqy~k~ 89 (562)
T 3ghg_A 61 DFTNRINKLKNSLFEYQKNNKDSHSLTTN 89 (562)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhchhHHHHHHH
Confidence 33333444444444445555555554443
No 114
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=70.86 E-value=28 Score=32.23 Aligned_cols=75 Identities=11% Similarity=0.180 Sum_probs=52.2
Q ss_pred eEEEEEecCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEE--eec-Ccccc--ccc--hhccccCCCCCceEEEEec
Q 002272 14 KLLVHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLV--LCL-DMKLE--PQK--LLSAYRLPSDDKEVFIFNK 86 (944)
Q Consensus 14 ~m~V~~A~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QIL--L~~-G~kL~--~~~--~L~~y~l~td~~eIyVfdR 86 (944)
-.+||++ +..-+++-...+.++.+++..++.+.+...++++| +.. |.|.. +.+ ...++++ ...|||+.|
T Consensus 11 ~~~Vy~~-Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~d~si~tsL~~---NgRLfvc~k 86 (104)
T 1wgy_A 11 FCHVYIT-EHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPNDLVISKSLEA---SGRIYVYRK 86 (104)
T ss_dssp CEEEECS-SSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTTSBSSCCSSCS---SCEEEEEEC
T ss_pred EEEEEec-cCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCcceEEEeeccc---cceEEEeeh
Confidence 3677777 33355566667799999999999999998888988 553 76653 221 1122233 489999999
Q ss_pred cccCCC
Q 002272 87 LRLQSN 92 (944)
Q Consensus 87 rll~~~ 92 (944)
..++.=
T Consensus 87 d~~d~L 92 (104)
T 1wgy_A 87 DLADTL 92 (104)
T ss_dssp CSSSCC
T ss_pred Hhcccc
Confidence 888544
No 115
>4g1a_A AQ-C16C19 peptide; helical bundles, metallopeptide complexes, polynuclear metal CD(II), SELF-assembly, metal binding protein; 1.85A {Synthetic construct}
Probab=66.64 E-value=3.5 Score=29.11 Aligned_cols=26 Identities=27% Similarity=0.562 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHH
Q 002272 639 HIQAMLKAKQMQCVSYEKRIQELEQR 664 (944)
Q Consensus 639 ~~~~~~~~~~~~~~~ye~ri~~le~~ 664 (944)
.|..-+.+.+.+|++-|..|..|||+
T Consensus 4 aleqkiaaleqkcaaceqkiaaleqk 29 (32)
T 4g1a_A 4 ALEQKIAALEQKCAACEQKIAALEQK 29 (32)
T ss_dssp HHHHHHHHHHHHTSSHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45666888999999999999999985
No 116
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=65.84 E-value=29 Score=31.90 Aligned_cols=73 Identities=14% Similarity=0.207 Sum_probs=51.4
Q ss_pred CCCcccccccCCeEEEEEe-cCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeec-C-cccc---ccchhccccCC
Q 002272 2 SCSITEVLVHEGKLLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCL-D-MKLE---PQKLLSAYRLP 75 (944)
Q Consensus 2 ~~~~~~~~~~~~~m~V~~A-~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~-G-~kL~---~~~~L~~y~l~ 75 (944)
|||.+..... ....|-+. .+|.++.--....++|.+|..||....+.+...-.|+++ . ..+. ...+|.+.|+.
T Consensus 2 ~~~~p~~~~~-~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~ 80 (109)
T 2dzk_A 2 SSGSSGRDRS-TIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELA 80 (109)
T ss_dssp CSCCCCCCCS-CCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCS
T ss_pred CCCCCCCCCC-CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCC
Confidence 5666555333 34555555 799988888888899999999999998887655566554 3 3454 35788887776
No 117
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=64.97 E-value=63 Score=37.53 Aligned_cols=28 Identities=7% Similarity=0.122 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 002272 388 NYMQKITYVSYVIKDAKLQFPVFREAMV 415 (944)
Q Consensus 388 ~~Lr~Is~IQs~I~evk~~L~~l~e~L~ 415 (944)
..+++|..+|..|.++..+|..|.-+|.
T Consensus 128 nQlsnIrvLQsnLedq~~kIQRLEvDId 155 (562)
T 3ghg_A 128 EKVQHIQLLQKNVRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555555555555544443
No 118
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=62.74 E-value=26 Score=30.59 Aligned_cols=65 Identities=15% Similarity=0.215 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhccCCCcccccccccccchhhhhHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 002272 588 KAELASAIALICSLCPEMEYESLDDSKLDGVLKNAAEKTAEALHLKDEYGKHIQAMLKAKQMQCVSYEKRIQELEQRLS 666 (944)
Q Consensus 588 ~ae~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~kd~~~~~~~~~~~~~~~~~~~ye~ri~~le~~l~ 666 (944)
|..+-.++..+..+-|.....-++ -..+|..| =+|+++|+......+.+...-..++..|+++|.
T Consensus 14 R~~in~~f~~Lr~lvP~~~~~k~s---K~~iL~~A-----------i~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~ 78 (83)
T 1nkp_B 14 RDHIKDSFHSLRDSVPSLQGEKAS---RAQILDKA-----------TEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVR 78 (83)
T ss_dssp HHHHHHHHHHHHTTSGGGTTSCCC---HHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCC---HHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777788887765422221 12344545 689999999999999999999999999999885
No 119
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=61.95 E-value=35 Score=35.90 Aligned_cols=109 Identities=11% Similarity=0.106 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhHHhhhHHHHHHHHhhhhhhhhhhh
Q 002272 820 SSELVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEAREEAQTHLCAADRRAS 899 (944)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 899 (944)
+......|+..+..-.......|.++..+|+++..++.+++.....+.+-+-.-.++..-+-++..+.+...=.-..+..
T Consensus 88 ~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~r~ 167 (256)
T 3na7_A 88 SERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKKKE 167 (256)
T ss_dssp SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhHhhhhHHHHhhHHHhhhhcccCCCCccch
Q 002272 900 EYSALRASAVKLRGLFERLRSCVFASEGAGGF 931 (944)
Q Consensus 900 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 931 (944)
++.+ .---.+-..|||+|.-...+ ||+.+
T Consensus 168 ~l~~--~i~~~lL~~Yerir~~~~g~-avv~v 196 (256)
T 3na7_A 168 DLVE--KTEPKIYSFYERIRRWAKNT-SIVTI 196 (256)
T ss_dssp HHHH--TSCHHHHHHHHHHHHHHGGG-SEEEC
T ss_pred HHHh--cCCHHHHHHHHHHHHhCCCc-eEEEe
No 120
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=60.62 E-value=32 Score=32.62 Aligned_cols=75 Identities=8% Similarity=0.130 Sum_probs=50.0
Q ss_pred EEEEEecCCceEEecCCCCCCHHHHHHHHHHHhCCCCC------CeEE--eec-Ccccc--cc--chhccccCCCCCceE
Q 002272 15 LLVHISENGHSFELDCNENSPVEAVMRFIESAAGINFN------DQLV--LCL-DMKLE--PQ--KLLSAYRLPSDDKEV 81 (944)
Q Consensus 15 m~V~~A~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~------~QIL--L~~-G~kL~--~~--~~L~~y~l~td~~eI 81 (944)
.+||++ +..-+.+-...+.++.+++..++.+.+...+ +++| +.. |.|.. +. -...++++. ..|
T Consensus 12 ~~VY~~-Dhsy~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~d~sv~tsL~~N---gRL 87 (120)
T 2dhz_A 12 CRVYMP-DHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEKVLLQPTEDCVFTALGIN---SHL 87 (120)
T ss_dssp ECEECT-TSCCCCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCCEECCTTCSCHHHHSCSS---EEE
T ss_pred EEEEec-cCceEEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcEeecCCcceEEEeecccc---ceE
Confidence 566766 2223334445668999999999999998765 7888 554 76642 22 222334444 899
Q ss_pred EEEeccccCCCC
Q 002272 82 FIFNKLRLQSNS 93 (944)
Q Consensus 82 yVfdRrll~~~~ 93 (944)
||+.|..++.=.
T Consensus 88 fvc~kd~~d~Lt 99 (120)
T 2dhz_A 88 FACTRDSYEALV 99 (120)
T ss_dssp EEECTTTTTTCC
T ss_pred EEeehHhccccc
Confidence 999999885443
No 121
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.16 E-value=35 Score=30.53 Aligned_cols=64 Identities=16% Similarity=0.173 Sum_probs=53.7
Q ss_pred cCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeec---CccccccchhccccCCCCCceEEEEeccc
Q 002272 21 ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCL---DMKLEPQKLLSAYRLPSDDKEVFIFNKLR 88 (944)
Q Consensus 21 ~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~---G~kL~~~~~L~~y~l~td~~eIyVfdRrl 88 (944)
.--+...+-+++..++.+|--.|.+++.+.++.-+|+-. +..|+=...|..||+. |+|+.|.+.
T Consensus 18 ~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLskSLndlgir----ELya~d~~~ 84 (91)
T 2daj_A 18 KKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLTKSLNDLGLR----ELYAMDVNR 84 (91)
T ss_dssp TTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTTSCHHHHTCS----EEEEEECCC
T ss_pred cCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchhcchhhhhhh----hhheecccc
Confidence 444555667889999999999999999999988888744 6678888999999987 899999765
No 122
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=59.38 E-value=21 Score=32.25 Aligned_cols=66 Identities=14% Similarity=0.097 Sum_probs=51.2
Q ss_pred cCCeEEEEE-ecCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeecCccccccchhccccCCC
Q 002272 11 HEGKLLVHI-SENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCLDMKLEPQKLLSAYRLPS 76 (944)
Q Consensus 11 ~~~~m~V~~-A~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~G~kL~~~~~L~~y~l~t 76 (944)
.++.|.|.+ ..+|+...+.+.+.+++-++-+.-..++|+++++=.|...+..++-+-.+...|+++
T Consensus 6 ~~~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpn 72 (90)
T 2al3_A 6 GGGGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDLSLQWRFANLPN 72 (90)
T ss_dssp ----CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESSSCBHHHHCCCS
T ss_pred cCCccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccccceeEecCCCC
Confidence 445565555 489999999999999999999999999999987666667777777777777778883
No 123
>3ljm_A Coil Ser L9C; de novo design, three stranded coiled coil, APO, de novo Pro; 1.36A {Synthetic} PDB: 2jgo_A 1cos_A 3h5g_A 3h5f_A 3pbj_A 2x6p_C 1coi_A
Probab=58.62 E-value=9.9 Score=26.70 Aligned_cols=23 Identities=30% Similarity=0.632 Sum_probs=19.7
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHH
Q 002272 645 KAKQMQCVSYEKRIQELEQRLSD 667 (944)
Q Consensus 645 ~~~~~~~~~ye~ri~~le~~l~~ 667 (944)
.+.+.+|++.|..+|.||.+|..
T Consensus 4 ealekkcaalesklqalekklea 26 (31)
T 3ljm_A 4 EALEKKCAALESKLQALEKKLEA 26 (31)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778999999999999999853
No 124
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=56.79 E-value=39 Score=29.32 Aligned_cols=70 Identities=20% Similarity=0.343 Sum_probs=48.9
Q ss_pred CCeEEEEEe-cCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeec--Cccc---cccchhccccCCCCCceEEE
Q 002272 12 EGKLLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCL--DMKL---EPQKLLSAYRLPSDDKEVFI 83 (944)
Q Consensus 12 ~~~m~V~~A-~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~--G~kL---~~~~~L~~y~l~td~~eIyV 83 (944)
++...|-+. .+|..+.--....++|.+|..||.. .+.+...-.|+++ ...+ +...+|...|+. ....|+|
T Consensus 5 ~~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~-p~a~L~v 80 (84)
T 3qx1_A 5 EPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLF-PQETLFL 80 (84)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCC-SEEEEEE
T ss_pred CCeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCC-CCCEEEE
Confidence 344555555 7999877666778999999999998 6777777777655 4456 345678777766 3445554
No 125
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=55.37 E-value=18 Score=34.57 Aligned_cols=33 Identities=15% Similarity=0.195 Sum_probs=30.6
Q ss_pred ecCCceEEecCCCCCCHHHHHHHHHHHhCCCCC
Q 002272 20 SENGHSFELDCNENSPVEAVMRFIESAAGINFN 52 (944)
Q Consensus 20 A~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~ 52 (944)
-.+|...++-++...+|..++..|....||+..
T Consensus 18 llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~ 50 (128)
T 2kc2_A 18 MLDGTVKTIMVDDSKTVTDMLMTICARIGITNH 50 (128)
T ss_dssp CTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCC
T ss_pred cCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCc
Confidence 379999999999999999999999999999965
No 126
>1i6z_A BAG-family molecular chaperone regulator-1; triple helix bundle; NMR {Mus musculus} SCOP: a.7.7.1
Probab=54.97 E-value=1.5e+02 Score=28.51 Aligned_cols=51 Identities=14% Similarity=0.212 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhHHHHHHHhhCCCCCcccc
Q 002272 180 NLEQYYRVINQNY---NDFMKRYSQQQRVHSDLLANFGRDIEKLRSVKLHPSLQ 230 (944)
Q Consensus 180 NLe~~~~~lek~f---~~f~~~f~~ll~~~~~LL~~we~dLe~Lr~IpVhpaL~ 230 (944)
-+..-+..|++-| .-....+..+-++.....+.+-..|+.|-++.+++.+.
T Consensus 39 ~l~~el~~iekGFL~k~l~~ea~~kl~Krik~~~E~~Mk~LE~LDs~~ip~~~~ 92 (135)
T 1i6z_A 39 ELNKELSGIQQGFLAKELQAEALCKLDRKVKATIEQFMKILEEIDTMVLPEQFK 92 (135)
T ss_dssp HHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCSCCH
T ss_pred HHHHHHHHHHhcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhccccCCccHH
Confidence 3334444555554 12224555666677778888889999999999987654
No 127
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=53.53 E-value=1.1e+02 Score=29.19 Aligned_cols=39 Identities=8% Similarity=0.175 Sum_probs=33.6
Q ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002272 424 LKLVRGIGPAYRACLAEVVRRKASMKLYMGMAGQLAERL 462 (944)
Q Consensus 424 L~~v~~lP~aYga~LiEVvRRRew~~k~~~~a~~lAEeL 462 (944)
+..+..=|.-|+..-.|+.|||.|...+.+.+..+..+|
T Consensus 90 I~ivE~np~kF~l~~~Ei~~Rr~fV~~~r~~I~~mk~~l 128 (130)
T 4dnd_A 90 IGIVEANPGKFKLPAGDLQERKVFVERMREAVQEMKDHM 128 (130)
T ss_dssp HHHHHHCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445567799999999999999999999999999888766
No 128
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=53.50 E-value=31 Score=29.88 Aligned_cols=59 Identities=20% Similarity=0.236 Sum_probs=38.0
Q ss_pred CCCCCCCchhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhh
Q 002272 812 DSGLDPKVSSELVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQ 870 (944)
Q Consensus 812 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 870 (944)
++++.+-++-..+-+||.+|..|..+|..-|..++..-.++.....|+..-+.-||..|
T Consensus 9 ~~~~~~~~~mgti~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 9 HHGMASIEGRGSLRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccchhhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444455599999999999998888887777777777777777766666666554
No 129
>1sb0_B Protein C-MYB; CREB-binding protein, transcriptional activation, constitutive activation, LXXLL motif, KIX; NMR {Mus musculus} PDB: 2agh_A
Probab=49.67 E-value=14 Score=25.37 Aligned_cols=20 Identities=50% Similarity=0.557 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHH--HHHHhhcc
Q 002272 655 EKRIQELEQRLS--DQYLMKQK 674 (944)
Q Consensus 655 e~ri~~le~~l~--~~~~~~~~ 674 (944)
|+||+|||=.|- +..+++|.
T Consensus 2 EkriKElELLLMS~E~Ev~~~~ 23 (26)
T 1sb0_B 2 EKRIKELELLLMSTENELKGQQ 23 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC
T ss_pred chHHHHHHHHHHhhHHHHcccc
Confidence 899999998873 45566654
No 130
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=48.73 E-value=2.1e+02 Score=32.00 Aligned_cols=45 Identities=20% Similarity=0.285 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 002272 265 SQFKQIFDDVKRRVEELLNTRASLPIKNLEMMIKEHQRFINEQKSIMQSLSKDVSTV 321 (944)
Q Consensus 265 ~~Lk~~i~~Ik~~vd~L~~~~~~~s~~~Le~~i~e~~~Ll~eq~siaQ~LssD~e~v 321 (944)
.+|++.+.-|+..|+.-+ . .|.-++..|.+|..-+|+|..|++..
T Consensus 116 ~eLe~~i~~lk~~V~~q~-----------~-~ir~Lq~~l~~q~~kiqRLE~~Id~c 160 (390)
T 1deq_A 116 EDLRSRIEILRRKVIEQV-----------Q-RINLLQKNVRDQLVDMKRLEVDIDIK 160 (390)
T ss_pred HHHHHHHHHHHHHHHHHh-----------H-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666665322 1 23344556777778888888887443
No 131
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=48.01 E-value=25 Score=31.26 Aligned_cols=40 Identities=25% Similarity=0.241 Sum_probs=27.6
Q ss_pred cchhhhhHHHHHHHHhhcchHHHHHHHHH----------HHHHHHHhhhHHHHHHHHHHHH
Q 002272 615 LDGVLKNAAEKTAEALHLKDEYGKHIQAM----------LKAKQMQCVSYEKRIQELEQRL 665 (944)
Q Consensus 615 ~~~~~~~a~~~~~~al~~kd~~~~~~~~~----------~~~~~~~~~~ye~ri~~le~~l 665 (944)
-+.+|+.| =||+++||.. ++-.+.....+=.||||||-+-
T Consensus 30 Kg~IL~ks-----------vdYI~~Lq~e~~r~~e~e~r~k~le~~n~~l~~riqELE~qa 79 (83)
T 4ath_A 30 KGTILKAS-----------VDYIRKLQREQQRAKDLENRQKKLEHANRHLLLRVQELEMQA 79 (83)
T ss_dssp HHHHHHHH-----------HHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 35677766 6888888653 3344455668888999999764
No 132
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=45.96 E-value=51 Score=29.55 Aligned_cols=49 Identities=6% Similarity=0.052 Sum_probs=41.5
Q ss_pred cCCeEEEEEecCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeec
Q 002272 11 HEGKLLVHISENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCL 59 (944)
Q Consensus 11 ~~~~m~V~~A~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~ 59 (944)
.++.|.|-....|..+.+.+.+..+++.|.+.|.+.++++..+.+.+.-
T Consensus 3 ~~~~vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky 51 (89)
T 1vd2_A 3 LGSQVRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKW 51 (89)
T ss_dssp CSSCEEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEE
T ss_pred CCCeEEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEE
Confidence 4567899999999999998888899999999999999999866566543
No 133
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=44.67 E-value=35 Score=25.51 Aligned_cols=32 Identities=19% Similarity=0.216 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhh
Q 002272 839 SETQTKLKAVMEEVVMLGRELEMRQKLLDESQ 870 (944)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 870 (944)
+..|+|....+.|..-|..|++.-++||-+|.
T Consensus 4 nQLE~kVEeLl~~~~~Le~EV~RL~~ll~~~e 35 (36)
T 1kd8_A 4 KQLEAEVEEIESEVWHLENEVARLEKENAECE 35 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcccc
Confidence 44577889999999999999999999998874
No 134
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=41.93 E-value=43 Score=31.29 Aligned_cols=37 Identities=24% Similarity=0.346 Sum_probs=24.0
Q ss_pred hhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhh
Q 002272 834 KSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQ 870 (944)
Q Consensus 834 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 870 (944)
.+--|.++|+||+.+|+.-+-|..||+.-..|.-++|
T Consensus 75 t~~SLeD~E~k~n~aiErnalLE~El~EKe~L~~~~Q 111 (111)
T 2v66_B 75 TIVSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQ 111 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3445666777777777777777777776666655554
No 135
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=41.12 E-value=1.8e+02 Score=25.21 Aligned_cols=36 Identities=19% Similarity=0.258 Sum_probs=27.3
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002272 241 VKEEHLRKSAETCSSSHRQFENKVSQFKQIFDDVKR 276 (944)
Q Consensus 241 Vd~e~Lrk~ae~C~~s~~~f~~Kl~~Lk~~i~~Ik~ 276 (944)
|+.+.|+..+..+......+...+..|...++.|..
T Consensus 8 V~~e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~l~~ 43 (98)
T 3gwk_C 8 LTPEELRSSAQKYTAGSQQVTEVLNLLTQEQAVIDE 43 (98)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 678899999998888888877777666666655543
No 136
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=40.71 E-value=35 Score=30.55 Aligned_cols=36 Identities=25% Similarity=0.484 Sum_probs=29.3
Q ss_pred chHHHH---HHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 002272 633 KDEYGK---HIQAMLKAKQMQCVSYEKRIQELEQRLSDQ 668 (944)
Q Consensus 633 kd~~~~---~~~~~~~~~~~~~~~ye~ri~~le~~l~~~ 668 (944)
+++++| .|.+.|...+.+..+.++||++|+.++-+.
T Consensus 20 ~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~ 58 (101)
T 1d7m_A 20 REQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDET 58 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345544 477888899999999999999999998664
No 137
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=36.95 E-value=55 Score=28.34 Aligned_cols=38 Identities=21% Similarity=0.147 Sum_probs=17.5
Q ss_pred HHHHHHhhcchHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 002272 624 EKTAEALHLKDEYGKHIQAMLKAKQMQCVSYEKRIQEL 661 (944)
Q Consensus 624 ~~~~~al~~kd~~~~~~~~~~~~~~~~~~~ye~ri~~l 661 (944)
.+.-+||..|||-..+.+..++.++.+..-+|.-|++|
T Consensus 22 ~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~L 59 (72)
T 3nmd_A 22 RDLQYALQEKIEELRQRDALIDELELELDQKDELIQML 59 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666654444433333333333333333333
No 138
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=36.89 E-value=1.3e+02 Score=26.58 Aligned_cols=98 Identities=16% Similarity=0.174 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHHH---HHHHHHHhHHHHHHHHHHhhhhhhhhhhHHhhhHHHHHHHHhhhhhhhhh
Q 002272 821 SELVLKLQSALADKSDQLSETQTKLKA---VMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEAREEAQTHLCAADRR 897 (944)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 897 (944)
+..+...+..+.+=..||.++|.+|.. +-.++..++.-++.-..|..+-.-.-..++.+...|+.=.....|+.+
T Consensus 1 el~L~~F~~~l~el~~WL~~~e~~l~~~~~~~~d~~~v~~~l~~h~~l~~ei~~~~~~v~~~~~~g~~L~~~~~~~~~-- 78 (119)
T 3uun_A 1 EVNLDRYQTALEEVLSWLLSAEDTLQAQGEISNDVEVVKDQFHTHEGYMMDLTAHQGRVGNILQLGSKLIGTGKLSED-- 78 (119)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHH--
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCCHH--
Q ss_pred hhhhhHhhhhHHHHhhHHHhhhhcc
Q 002272 898 ASEYSALRASAVKLRGLFERLRSCV 922 (944)
Q Consensus 898 ~~~~~~~~~~~~~~~~~~~~~~~~~ 922 (944)
+...++.-.-.|..-++.|...+
T Consensus 79 --~~~~i~~~l~~l~~rw~~L~~~~ 101 (119)
T 3uun_A 79 --EETEVQEQMNLLNSRWECLRVAS 101 (119)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHH
No 139
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=33.87 E-value=68 Score=23.79 Aligned_cols=31 Identities=32% Similarity=0.366 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHhhh
Q 002272 838 LSETQTKLKAVMEEVVMLGRELEMRQKLLDE 868 (944)
Q Consensus 838 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (944)
++..|+|++.++.+-.-|..|+..-++||-|
T Consensus 3 MnQledKvEel~~~~~~l~nEv~Rl~~lLg~ 33 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYHNANELARVAKLLGE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHhHHHHHHHHHHHHHhcC
Confidence 3456789999999999999999999998865
No 140
>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A
Probab=32.27 E-value=7.2e+02 Score=29.72 Aligned_cols=70 Identities=9% Similarity=0.079 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCc-hhh--hHHHHHHHHHHHHHHHHHHH
Q 002272 243 EEHLRKSAETCSSSHRQFENKVSQFKQIFDDVKRRVEELLNTRASLP-IKN--LEMMIKEHQRFINEQKSIMQ 312 (944)
Q Consensus 243 ~e~Lrk~ae~C~~s~~~f~~Kl~~Lk~~i~~Ik~~vd~L~~~~~~~s-~~~--Le~~i~e~~~Ll~eq~siaQ 312 (944)
..+++...+....+...+..++...+..|..+....++|....|+.. ... -...+..++.++++...|-+
T Consensus 498 ~~~~~~~l~~A~~sD~~v~~~~~~~~~~l~~L~~~~~~l~~~~p~~~~~~~~~~~~~~~~L~~~l~~l~~l~~ 570 (704)
T 2xs1_A 498 GTNFRTVLDKAVQADGQVKECYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQGSEVVNVLKSLLSNLDEVKK 570 (704)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHTSCHHHHHHTSCCCCCCGGGSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhCCCHHHHHhhCccCCCcccccchHHHHHHHHHHHHHHHHHH
Confidence 45667777777778888888888888888777766666655544321 111 11233444555555544433
No 141
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=31.91 E-value=2e+02 Score=24.96 Aligned_cols=66 Identities=15% Similarity=0.125 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHhccCCCcccccccccccchhhhhHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 002272 588 KAELASAIALICSLCPEMEYESLDDSKLDGVLKNAAEKTAEALHLKDEYGKHIQAMLKAKQMQCVSYEKRIQELEQRLS 666 (944)
Q Consensus 588 ~ae~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~kd~~~~~~~~~~~~~~~~~~~ye~ri~~le~~l~ 666 (944)
|+.|-..+..+...-|..... +--.-..+|+.| -+|+++|+......+.....-.+++++|.++|.
T Consensus 13 R~~lk~~f~~Lr~~vP~~~~~--~k~sk~~iL~kA-----------~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~ 78 (80)
T 1nlw_A 13 RAHLRLSLEKLKGLVPLGPDS--SRHTTLSLLTKA-----------KLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (80)
T ss_dssp HHHHHHHHHHHHHSSCCCSSS--CCCTTHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCC--CCCCHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 667777777777776654211 111123566767 599999999999999999999999999999886
No 142
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=31.40 E-value=57 Score=24.04 Aligned_cols=30 Identities=20% Similarity=0.315 Sum_probs=26.1
Q ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHhhh
Q 002272 839 SETQTKLKAVMEEVVMLGRELEMRQKLLDE 868 (944)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (944)
+..|.|....+.|...|..|++.-++||.+
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk~Ll~~ 32 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLKKLVGE 32 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 446789999999999999999999999865
No 143
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=31.30 E-value=1.5e+02 Score=27.86 Aligned_cols=62 Identities=18% Similarity=0.170 Sum_probs=43.5
Q ss_pred CeEEEEEe-cCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeec--Cccc---cccchhccccCC
Q 002272 13 GKLLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCL--DMKL---EPQKLLSAYRLP 75 (944)
Q Consensus 13 ~~m~V~~A-~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~--G~kL---~~~~~L~~y~l~ 75 (944)
....|-+. .+|.++.--....++|.+|..||... +.+...-.|+++ ...| +...+|...|+.
T Consensus 42 ~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~ 109 (124)
T 1wj4_A 42 PKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLC 109 (124)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCC
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCC
Confidence 45666666 69998877777889999999999887 776656566554 4445 234666666655
No 144
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=30.92 E-value=2.5e+02 Score=23.96 Aligned_cols=36 Identities=14% Similarity=0.250 Sum_probs=29.0
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002272 241 VKEEHLRKSAETCSSSHRQFENKVSQFKQIFDDVKR 276 (944)
Q Consensus 241 Vd~e~Lrk~ae~C~~s~~~f~~Kl~~Lk~~i~~Ik~ 276 (944)
|+.+.|+..+..+......+...+..|+..+..|..
T Consensus 9 v~~~~l~~~A~~~~~~~~~i~~~l~~L~~~v~~L~~ 44 (99)
T 3zbh_A 9 LTPEELRGVARQYNVESSNVTELIARLDQMSHTLQG 44 (99)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 778999999999888888888887777777666654
No 145
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=30.25 E-value=86 Score=23.50 Aligned_cols=31 Identities=13% Similarity=0.165 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHhhhhh
Q 002272 840 ETQTKLKAVMEEVVMLGRELEMRQKLLDESQ 870 (944)
Q Consensus 840 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 870 (944)
..|+|....+.+-.-|..|++.-++||-+|.
T Consensus 5 QLE~KVEeLl~~~~~Le~eV~RLk~ll~~~~ 35 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNKVARLKKKNAECK 35 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcccc
Confidence 3467888888888888888888888888873
No 146
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=29.28 E-value=2.6e+02 Score=26.14 Aligned_cols=62 Identities=11% Similarity=0.120 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhC
Q 002272 161 ERLLREQKVQERAVEVGRGNLEQYYRVINQNYNDFMKRYSQQQRVHSDLLANFGRDIEKLRS 222 (944)
Q Consensus 161 e~Lv~Ei~vq~raL~aAvaNLe~~~~~lek~f~~f~~~f~~ll~~~~~LL~~we~dLe~Lr~ 222 (944)
..=+.+++-+.++|.+-+..+......++....+....+...+..+...+..++..|..++.
T Consensus 35 k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~ 96 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQ 96 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 33355566666677777777777777777777766666666666666677777766666655
No 147
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=28.80 E-value=1.4e+02 Score=26.41 Aligned_cols=96 Identities=13% Similarity=0.143 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHHH---HHHHHHHhHHHHHHHHHHhhhhhhhhhhHHhhhHHHHHHHHhhhhhhhhh
Q 002272 821 SELVLKLQSALADKSDQLSETQTKLKA---VMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEAREEAQTHLCAADRR 897 (944)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 897 (944)
+..+...+.++.+=..||.++|.+|.. +-..+..++.-+..-+.|..+-.-.=..++.+...|+.=.....++.+
T Consensus 1 ~l~L~~f~~~l~el~~WL~e~e~~l~~~~~~~~d~~~v~~~l~~h~~l~~ei~~~~~~v~~v~~~g~~L~~~~~~~~~-- 78 (118)
T 3uul_A 1 DMDLDSYQIALEEVLTWLLSAEDTFQEQDDISDDVEDVKEQFATHETFMMELSAHQSSVGSVLQAGNQLMTQGTLSDE-- 78 (118)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHTSCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHH--
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChh--
Q ss_pred hhhhhHhhhhHHHHhhHHHhhhh
Q 002272 898 ASEYSALRASAVKLRGLFERLRS 920 (944)
Q Consensus 898 ~~~~~~~~~~~~~~~~~~~~~~~ 920 (944)
+...++.-.-.|+.-++.|..
T Consensus 79 --~~~~i~~~l~~l~~rw~~L~~ 99 (118)
T 3uul_A 79 --EEFEIQEQMTLLNARWEALRV 99 (118)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHH
No 148
>2d9d_A BAG family molecular chaperone regulator 5; triple helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.42 E-value=72 Score=28.25 Aligned_cols=43 Identities=28% Similarity=0.376 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhHHHHHHHH-------HHhhhhhhhhhhHHh-------hhHHHHHH
Q 002272 844 KLKAVMEEVVMLGRELEMRQ-------KLLDESQMNCAHLEN-------CLHEAREE 886 (944)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~-------~~~~~~~~ 886 (944)
|+.+++..+..|+.||...+ .+-.|-|---.||.| |..|||.-
T Consensus 11 ~Ie~v~~r~r~l~~ell~~~~~s~~yl~~k~eLq~Li~~LDev~~~~NpcIReaRRr 67 (89)
T 2d9d_A 11 KIEKVLKRMREIKNELLQAQNPSELYLSSKTELQGLIGQLDEVSLEKNPCIREARRR 67 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHCSCTTTHHHHHHHHHHHHHHHHGGGCSCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCchHHHhhhHHHHHHHHHHHhhcccCCChHHHHHHHH
Confidence 66778888888888888777 666677777788876 88998853
No 149
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=28.38 E-value=1.7e+02 Score=28.46 Aligned_cols=66 Identities=20% Similarity=0.281 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhHHhhhHHHHHHH
Q 002272 822 ELVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEAREEA 887 (944)
Q Consensus 822 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 887 (944)
..+..|...|.+-.....+.+.|...+.--++++..+|+.+-.=++.+..-|..||+-|+-+=.--
T Consensus 52 Er~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nl 117 (147)
T 2b9c_A 52 EKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNL 117 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666667777888888888899999999999999999999999999999998654433
No 150
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=27.88 E-value=2.8e+02 Score=23.52 Aligned_cols=34 Identities=9% Similarity=0.261 Sum_probs=27.4
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002272 241 VKEEHLRKSAETCSSSHRQFENKVSQFKQIFDDV 274 (944)
Q Consensus 241 Vd~e~Lrk~ae~C~~s~~~f~~Kl~~Lk~~i~~I 274 (944)
|+.+.|+..+..+......+...+..|+..+..|
T Consensus 9 v~~e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~L 42 (93)
T 4ioe_A 9 ITPEELERIAGNFKNAAGEAQSQINRLEGDINSL 42 (93)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999998888888888777776666655
No 151
>1r4t_A Exoenzyme S; EXOS, GAP, toxin, virulence factor, signal transduction; NMR {Pseudomonas aeruginosa}
Probab=27.81 E-value=46 Score=32.40 Aligned_cols=27 Identities=30% Similarity=0.425 Sum_probs=23.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHhHHHHHH
Q 002272 835 SDQLSETQTKLKAVMEEVVMLGRELEM 861 (944)
Q Consensus 835 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 861 (944)
.++|.++-.+|..+|+||+-|++++|.
T Consensus 108 ~e~L~ea~~~lh~vm~eva~l~~ave~ 134 (153)
T 1r4t_A 108 PELRREITDQLHQVMSEVALLRQAVES 134 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888999999999999999985
No 152
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=27.43 E-value=3e+02 Score=24.27 Aligned_cols=66 Identities=17% Similarity=0.139 Sum_probs=45.5
Q ss_pred hhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhhhhHHhhhHHHHH
Q 002272 820 SSELVLKLQSALADKSDQLSETQTKLKAVMEEVVMLGRELEMRQKLLDESQMNCAHLENCLHEARE 885 (944)
Q Consensus 820 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 885 (944)
.+..+..|+..|..-.....+++.+...++.|.+.|...+..+....+.-.-.=..||.-||+..+
T Consensus 19 ~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~ 84 (89)
T 3bas_A 19 QLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKK 84 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777788777788889999999999999999877444444444333334466777776643
No 153
>3brv_A Inhibitor of nuclear factor kappa-B kinase subuni; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Synthetic} PDB: 3brt_A
Probab=26.65 E-value=37 Score=27.20 Aligned_cols=30 Identities=27% Similarity=0.490 Sum_probs=24.9
Q ss_pred HHHHHHhhhhhhhhhhHHhhhHHHHHHHHhh
Q 002272 860 EMRQKLLDESQMNCAHLENCLHEAREEAQTH 890 (944)
Q Consensus 860 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 890 (944)
+.+..|++|.|-=|-+|++-+|++.+| |.+
T Consensus 6 ~~~~~lleEn~~~~~~L~sliqdt~~e-q~~ 35 (48)
T 3brv_A 6 KKSEELVAEAHNLCTLLENAIQDTVRE-QDQ 35 (48)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHH-TTS
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHH-Hhc
Confidence 567789999999999999999999998 443
No 154
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=26.32 E-value=2.5e+02 Score=24.81 Aligned_cols=66 Identities=23% Similarity=0.236 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhccCCCcccccccccccchhhhhHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 002272 588 KAELASAIALICSLCPEMEYESLDDSKLDGVLKNAAEKTAEALHLKDEYGKHIQAMLKAKQMQCVSYEKRIQELEQRLS 666 (944)
Q Consensus 588 ~ae~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~kd~~~~~~~~~~~~~~~~~~~ye~ri~~le~~l~ 666 (944)
|..|-..+..+...-|...... --.-..+|+.| =+|+++|+......+.+...-..+.+.|.++|.
T Consensus 18 R~~ln~~f~~Lr~~vP~~~~~~--K~sK~~iL~~A-----------~~YI~~L~~~~~~l~~~~~~L~~~n~~L~~rl~ 83 (88)
T 1nkp_A 18 RNELKRSFFALRDQIPELENNE--KAPKVVILKKA-----------TAYILSVQAEEQKLISEEDLLRKRREQLKHKLE 83 (88)
T ss_dssp HHHHHHHHHHHHTTCGGGTTCT--TCCHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCC--CCCHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777766553211 01112455555 589999999999888888888888888888875
No 155
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=26.22 E-value=2.4e+02 Score=26.52 Aligned_cols=61 Identities=11% Similarity=0.193 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhC
Q 002272 162 RLLREQKVQERAVEVGRGNLEQYYRVINQNYNDFMKRYSQQQRVHSDLLANFGRDIEKLRS 222 (944)
Q Consensus 162 ~Lv~Ei~vq~raL~aAvaNLe~~~~~lek~f~~f~~~f~~ll~~~~~LL~~we~dLe~Lr~ 222 (944)
.=+.+++-+.++|.+-+..+......++....+....+...+..+...+..++..|..++.
T Consensus 38 ~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~ 98 (131)
T 3tnu_A 38 SEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRC 98 (131)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555566666666666666666666666666666666666666666767766666655
No 156
>3kdq_A Uncharacterized conserved protein; functionally unknown protein,corynebacterium diphtheriae, structural genomics, PSI-2; 3.00A {Corynebacterium diphtheriae}
Probab=24.90 E-value=36 Score=33.52 Aligned_cols=26 Identities=0% Similarity=0.049 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHH
Q 002272 823 LVLKLQSALADKSDQLSETQTKLKAV 848 (944)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 848 (944)
-|.++|...++.++++.+++.|+..+
T Consensus 122 dv~~~qk~ad~l~k~~r~Ld~~IQ~~ 147 (154)
T 3kdq_A 122 DAREIRKKADLAAKEYRQLDVDIQRL 147 (154)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999888653
No 157
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=24.37 E-value=1.1e+02 Score=22.71 Aligned_cols=31 Identities=23% Similarity=0.323 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHHHHHHhHHHHHHHHHHhhh
Q 002272 838 LSETQTKLKAVMEEVVMLGRELEMRQKLLDE 868 (944)
Q Consensus 838 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 868 (944)
.+..|.|....+.|-..|..|++.-++||.+
T Consensus 3 MnQLEdKVEeLl~~~~~Le~EV~RLk~ll~~ 33 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYHXENEXARIXKLLXE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Confidence 3456788999999888888888888888854
No 158
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=24.10 E-value=71 Score=28.22 Aligned_cols=31 Identities=16% Similarity=0.255 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q 002272 638 KHIQAMLKAKQMQCVSYEKRIQELEQRLSDQ 668 (944)
Q Consensus 638 ~~~~~~~~~~~~~~~~ye~ri~~le~~l~~~ 668 (944)
...|..|.....++...|++|.+|+++|++-
T Consensus 18 ykeqrEle~le~~Ie~LE~~i~~le~~ladp 48 (89)
T 2lw1_A 18 YKLQRELEQLPQLLEDLEAKLEALQTQVADA 48 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 3578899999999999999999999999863
No 159
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D
Probab=23.93 E-value=8.3e+02 Score=27.69 Aligned_cols=31 Identities=6% Similarity=0.028 Sum_probs=25.8
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Q 002272 421 FADLKLVRGIGPAYRACLAEVVRRKASMKLY 451 (944)
Q Consensus 421 F~~L~~v~~lP~aYga~LiEVvRRRew~~k~ 451 (944)
.+.+..+.++-..|..+.-|..+|++-.++.
T Consensus 363 ~eFF~~~~~F~~~fkkA~~eN~~r~e~eek~ 393 (457)
T 3obv_E 363 EEFFMDLHNFRNMFLQAVKENQKRRETEEKM 393 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777788899999999999999988776
No 160
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=23.02 E-value=4.5e+02 Score=24.77 Aligned_cols=58 Identities=12% Similarity=0.317 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 002272 158 EMCERLLREQKVQERAVEVGRGNLEQ---------YYRVINQNYNDFMKRYSQQQRVHSDLLANFGR 215 (944)
Q Consensus 158 e~ce~Lv~Ei~vq~raL~aAvaNLe~---------~~~~lek~f~~f~~~f~~ll~~~~~LL~~we~ 215 (944)
+.+...+.+...++..+..-.+.|.. -+..+-+.|..+.+.++..+.+...+.++|+.
T Consensus 37 E~A~~~L~~~~~m~~~i~ek~~~i~~~~~~~~yK~eY~~L~KkYk~~~~~Ld~eI~~qe~iI~nFe~ 103 (119)
T 2avr_X 37 DAARQALAQNEQVYNELSQRAQRLQAEANTRFYKSQYQELASKYEDALKKLEAEMEQQKAVISDFEK 103 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555566666666655554 33445555555555555555555555555554
No 161
>3vjf_A WA20; protein design, de novo protein, binary patterned design, FO bundle, rudimentary enzymatic activitie; 2.20A {Synthetic construct}
Probab=22.22 E-value=3.9e+02 Score=23.19 Aligned_cols=77 Identities=23% Similarity=0.303 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----cCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 002272 245 HLRKSAETCSSSHRQFENKVSQFKQIFDDVKRRVEELLNTR-----ASLPIKNLEMMIKEHQRFINEQKSIMQSLSKDVS 319 (944)
Q Consensus 245 ~Lrk~ae~C~~s~~~f~~Kl~~Lk~~i~~Ik~~vd~L~~~~-----~~~s~~~Le~~i~e~~~Ll~eq~siaQ~LssD~e 319 (944)
+|.+..+..+..+++++..--+-...+.+++...+.|+..+ .+-+.-.+..++-+..++++......|+-+.-+.
T Consensus 4 klnklvehikellqqlnknwhrhqgnlhdmnqqmeqlfqefqhfmqgnqddgklqnmihemqqfmnqvdnhlqsesdtvh 83 (102)
T 3vjf_A 4 KLNKLVEHIKELLQQLNKNWHRHQGNLHDMNQQMEQLFQEFQHFMQGNQDDGKLQNMIHEMQQFMNQVDNHLQSESDTVH 83 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHhhccchHHH
Confidence 45667777777777877777777777777777777776642 2334445777777777777776666665554444
Q ss_pred HH
Q 002272 320 TV 321 (944)
Q Consensus 320 ~v 321 (944)
++
T Consensus 84 hf 85 (102)
T 3vjf_A 84 HF 85 (102)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 162
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=21.62 E-value=83 Score=26.85 Aligned_cols=45 Identities=33% Similarity=0.395 Sum_probs=0.0
Q ss_pred cccchhhhhHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 002272 613 SKLDGVLKNAAEKTAEALHLKDEYGKHIQAMLKAKQMQCVSYEKRIQELEQRL 665 (944)
Q Consensus 613 ~~~~~~~~~a~~~~~~al~~kd~~~~~~~~~~~~~~~~~~~ye~ri~~le~~l 665 (944)
|..|+. +.--+...+++..||+-+..|+..|..+ +..|++|..+|
T Consensus 4 ~~~~~~-~~~~e~~~~~i~~Kde~I~eLE~~L~~k-------d~eI~eLr~~L 48 (67)
T 1zxa_A 4 GIPGST-SELEEDFAKILMLKEERIKELEKRLSEK-------EEEIQELKRKL 48 (67)
T ss_dssp --------------CHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred CCCCcc-hHHHHHHHHHHHccHHHHHHHHHHHHHH-------HHHHHHHHHHH
No 163
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=20.95 E-value=9e+02 Score=27.01 Aligned_cols=14 Identities=7% Similarity=0.017 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHH
Q 002272 258 RQFENKVSQFKQIF 271 (944)
Q Consensus 258 ~~f~~Kl~~Lk~~i 271 (944)
.....|+++|+.+|
T Consensus 144 ~~q~~kiqRLE~~I 157 (390)
T 1deq_A 144 RDQLVDMKRLEVDI 157 (390)
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555555555
No 164
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=20.86 E-value=1.9e+02 Score=26.21 Aligned_cols=71 Identities=10% Similarity=0.012 Sum_probs=47.9
Q ss_pred CeEEEEEe-cCCceEEecCCCCCCHHHHHHHHHHHhCCCCCCeEEeec--Ccccc--ccchhccccCCCCCceEEEEe
Q 002272 13 GKLLVHIS-ENGHSFELDCNENSPVEAVMRFIESAAGINFNDQLVLCL--DMKLE--PQKLLSAYRLPSDDKEVFIFN 85 (944)
Q Consensus 13 ~~m~V~~A-~tG~sl~ld~~~f~sVe~LK~~Ia~~~gIp~~~QILL~~--G~kL~--~~~~L~~y~l~td~~eIyVfd 85 (944)
...+|-+. .+|..+.--....++|.+|..||...-..+. .-.|+++ ...+. ...+|...|+. ....|+|=.
T Consensus 22 ~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~~~~~~-~f~L~t~fPrk~l~~d~~~TL~e~gL~-p~a~L~Ve~ 97 (109)
T 2cr5_A 22 EVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKVGYHKS-LYRLSTSFPRRALEVEGGSSLEDIGIT-VDTVLNVEE 97 (109)
T ss_dssp SEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHHTCCTT-TEEEECSSSCCBCCCCSSCBHHHHTCS-SCEEEEEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhcCCCCC-CeEEEeCCCCcCCCCCCCCCHHHcCCC-CCeEEEEEe
Confidence 45677676 7998876666677999999999997643333 4445443 55564 46888888877 345566643
No 165
>2vxx_A Starvation induced DNA binding protein; stress response protein, DPS, oxidation, iron binding, ferroxidase centre; HET: PG4; 2.40A {Synechococcus elongatus}
Probab=20.42 E-value=5.7e+02 Score=25.06 Aligned_cols=51 Identities=10% Similarity=0.132 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhCCCCC
Q 002272 176 VGRGNLEQYYRVINQNYNDFMKRYSQQQRVHSDLLANFGRDIEKLRSVKLH 226 (944)
Q Consensus 176 aAvaNLe~~~~~lek~f~~f~~~f~~ll~~~~~LL~~we~dLe~Lr~IpVh 226 (944)
+..+++..|+.--...|..+..+|..+......-.+.+-..+-.|+..|.-
T Consensus 43 a~~~y~~~hw~v~g~~f~~lh~~~~~~~~ee~~had~laErI~~LGg~p~~ 93 (192)
T 2vxx_A 43 LYLQYQKHHFVVEGAEFYPLHQFFQDCYEQVQDHVHALGERLNGLGGVPVA 93 (192)
T ss_dssp HHHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 334444445554456677777788777776666777777778888888754
No 166
>2ykt_A Brain-specific angiogenesis inhibitor 1-associate protein 2; signaling protein, NPY motif, binding pocket; 2.11A {Homo sapiens} PDB: 1y2o_A 1wdz_A
Probab=20.24 E-value=6.2e+02 Score=26.49 Aligned_cols=93 Identities=11% Similarity=0.053 Sum_probs=0.0
Q ss_pred hhhhhchh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHH-----HHHHHHHHH
Q 002272 127 PALKALPS----YERQFRYHYHRGHAIYIRTQAKIEMCERLL---------REQKVQERAVEVGRG-----NLEQYYRVI 188 (944)
Q Consensus 127 p~lraL~s----ye~lf~~~l~wA~al~~da~~~~e~ce~Lv---------~Ei~vq~raL~aAva-----NLe~~~~~l 188 (944)
|.++.|.. |++.++....-+.+++...++..+.+.... -++-..+|++..-+. ..+..+..+
T Consensus 29 P~~e~li~~~~kY~~al~~~~~a~~~f~dal~kia~~A~~s~gs~elG~~L~~i~~~~r~ie~~l~~~~~~~~~~li~pL 108 (253)
T 2ykt_A 29 PSLRNFIAMGKNYEKALAGVTYAAKGYFDALVKMGELASESQGSKELGDVLFQMAEVHRQIQNQLEEMLKSFHNELLTQL 108 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 002272 189 NQNYNDFMKRYSQQQRVHSDLLANFGRDIEK 219 (944)
Q Consensus 189 ek~f~~f~~~f~~ll~~~~~LL~~we~dLe~ 219 (944)
+++...-.+++....++|..=..+....|++
T Consensus 109 ~~kie~d~K~v~~~~K~~~~e~k~~~~~l~K 139 (253)
T 2ykt_A 109 EQKVELDSRYLSAALKKYQTEQRSKGDALDK 139 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhHhHHHH
Done!