BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002273
(944 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 132 bits (332), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 102/352 (28%), Positives = 167/352 (47%), Gaps = 20/352 (5%)
Query: 89 GICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPS 148
I Q + + R A S + A+K +P A A+++ G +YK+ G+L EA E Y AL P
Sbjct: 41 SIHFQCRRLDRSAHFS-TLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD 99
Query: 149 YKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYD 208
+ +L +L AG+ + +Q Y AL+ +P +LG + L + +
Sbjct: 100 FIDG-------YINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLE 152
Query: 209 TALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 268
A CY KA +P +A A+ N+G ++ +G++ AI +E+ + + PNF A N+
Sbjct: 153 EAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNV 212
Query: 269 LT-----DLGTKTYGRALLL---FRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNW 320
L D Y RAL L + N ++E +G I+ + Y++A+
Sbjct: 213 LKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE----QGLIDLAIDTYRRAIELQP 268
Query: 321 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 380
H+ DA NL A E A Y A P A++ NNL I +++ N+++AV Y
Sbjct: 269 HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLY 328
Query: 381 QMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLG 432
+ AL + P F+ + +NL V QG +PT+A+AY+N+G
Sbjct: 329 RKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 380
Score = 110 bits (275), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 133/286 (46%), Gaps = 4/286 (1%)
Query: 183 ALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLE 242
A+K +P A AY NLG VY E Q A+ Y A +P + + Y N+ GD+E
Sbjct: 59 AIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDME 118
Query: 243 SAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGS-NFQSPFFEL--- 298
A+ Y L +P+ ++++ L LG +A L + NF + L
Sbjct: 119 GAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCV 178
Query: 299 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE 358
+G+I + +++KA+ + ++ DA NLG E FD A+ Y A +P+ A
Sbjct: 179 FNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV 238
Query: 359 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXX 418
NL +Y ++ +D A++ Y+ A+ ++P+F + NL +G
Sbjct: 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTAL 298
Query: 419 XXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 464
PT+A++ NNL + R+ G+I A+ Y + L++ P+ A N
Sbjct: 299 RLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSN 344
Score = 109 bits (272), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 84/319 (26%), Positives = 145/319 (45%), Gaps = 13/319 (4%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
N+ + R + +A+ Y L ++ +I L A ++ A++ +P
Sbjct: 75 NVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL 134
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQD 175
C + G L K GRL EA Y KA+ P++ A+ ++LG G
Sbjct: 135 YCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF-------AVAWSNLGCVFNAQGEIWL 187
Query: 176 GIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY 235
I + +A+ +DP++ AY NLG V E +D A+ Y +A P +A + N+ +Y
Sbjct: 188 AIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVY 247
Query: 236 KNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGT-----KTYGRALLLFRLNGSN 290
+G ++ AI Y R + + P+F A N+A AL + G+ Y AL L + +
Sbjct: 248 YEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADS 307
Query: 291 FQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 350
+ + + +G+I + V Y+KAL +A A NL + K A++ Y+ A
Sbjct: 308 LNN-LANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAI 366
Query: 351 HFNPHCAEACNNLGVIYKD 369
+P A+A +N+G K+
Sbjct: 367 RISPTFADAYSNMGNTLKE 385
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 110/225 (48%), Gaps = 10/225 (4%)
Query: 51 ALSYAN---ILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSE 107
A++++N + ++ + A+ +E + D ++A+I G L+ + A ++
Sbjct: 169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLR 228
Query: 108 AVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSL 167
A+ L P +A H + +Y ++G + A ++Y +A+ P + P A C +L +L
Sbjct: 229 ALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF-PDAYC------NLANAL 281
Query: 168 KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEA 227
K G+ + Y AL++ P +A + NL + E + A+ Y KA P +A A
Sbjct: 282 KEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA 341
Query: 228 YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDL 272
+ N+ + + +G L+ A+ Y+ + +SP F A +NM L ++
Sbjct: 342 HSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM 386
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 88/189 (46%), Gaps = 7/189 (3%)
Query: 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL 111
++ N+L+ F A+A Y L + H Q + LA D++ A++L
Sbjct: 207 INLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266
Query: 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG 171
P A+ + K++G + EA + Y+ AL P++ A L +L + G
Sbjct: 267 QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH-------ADSLNNLANIKREQG 319
Query: 172 NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNM 231
N ++ ++ Y +AL++ P +A A+ NL V + + AL Y++A P +A+AY NM
Sbjct: 320 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 379
Query: 232 GVIYKNRGD 240
G K D
Sbjct: 380 GNTLKEMQD 388
>pdb|2VSN|A Chain A, Structure And Topological Arrangement Of An O-Glcnac
Transferase Homolog: Insight Into Molecular Control Of
Intracellular Glycosylation
pdb|2VSN|B Chain B, Structure And Topological Arrangement Of An O-Glcnac
Transferase Homolog: Insight Into Molecular Control Of
Intracellular Glycosylation
Length = 568
Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 99/355 (27%), Positives = 153/355 (43%), Gaps = 16/355 (4%)
Query: 510 PLVIGYVSPDYFTHSVSYFIEAPL-VYHDYQNYXXXXXXXXXXXXXXTIRFREKVMKKGG 568
PL +G+VS + H A Q T+R R + +
Sbjct: 205 PLRVGFVSNGFGAHPTGLLTVALFEALQRRQPDLQMHLFATSGDDGSTLRTR---LAQAS 261
Query: 569 IWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGL 628
D+ + A +R ID+L +L G + + A +PAPVQV W+ YP T+G
Sbjct: 262 TLHDVTALGHLATAKHIRHHGIDLLFDLAGWGGGGRPEVFALRPAPVQVNWLAYPGTSGA 321
Query: 629 PTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALTN-GF----I 683
P +DY + D+ A PP + + E ++RL F PS + V P+ T G +
Sbjct: 322 PWMDYVLGDAFALPPALEPFYSEHVLRLQGAF---QPSDTSRVVAEPPSRTQCGLPEQGV 378
Query: 684 TFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLR 743
FNN K+ P+ + +L VP+S L + P D+ R + G+++ R
Sbjct: 379 VLCCFNNSYKLNPQSMARMLAVLREVPDSVLWLLSGPGEADA---RLRAFAHAQGVDAQR 435
Query: 744 VDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVS 803
+ +P L + ++ Y D+ LDT PY TT ++L+ G P +T G A V S
Sbjct: 436 LVFMP-KLPHPQYLARYRHADLFLDTHPYNAHTTASDALWTGCPVLTTPGETFAARVAGS 494
Query: 804 LLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFA 858
L +GL + ++ +V A+ LASD AL L + L S V FA
Sbjct: 495 LNHHLGLDEMNVADDAAFVAKAVALASDPAALTALHARVDVLRRASGVFHMDGFA 549
>pdb|2VSY|A Chain A, Xanthomonas Campestris Putative Ogt (Xcc0866),
Apostructure
pdb|2VSY|B Chain B, Xanthomonas Campestris Putative Ogt (Xcc0866),
Apostructure
pdb|2JLB|A Chain A, Xanthomonas Campestris Putative Ogt (Xcc0866), Complex
With Udp-Glcnac Phosphonate Analogue
pdb|2JLB|B Chain B, Xanthomonas Campestris Putative Ogt (Xcc0866), Complex
With Udp-Glcnac Phosphonate Analogue
pdb|2XGM|A Chain A, Substrate And Product Analogues As Human O-Glcnac
Transferase Inhibitors.
pdb|2XGM|B Chain B, Substrate And Product Analogues As Human O-Glcnac
Transferase Inhibitors.
pdb|2XGO|A Chain A, Xcogt In Complex With Udp-S-Glcnac
pdb|2XGO|B Chain B, Xcogt In Complex With Udp-S-Glcnac
pdb|2XGS|A Chain A, Xcogt In Complex With C-Udp
pdb|2XGS|B Chain B, Xcogt In Complex With C-Udp
Length = 568
Score = 124 bits (310), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 99/355 (27%), Positives = 153/355 (43%), Gaps = 16/355 (4%)
Query: 510 PLVIGYVSPDYFTHSVSYFIEAPL-VYHDYQNYXXXXXXXXXXXXXXTIRFREKVMKKGG 568
PL +G+VS + H A Q T+R R + +
Sbjct: 205 PLRVGFVSNGFGAHPTGLLTVALFEALQRRQPDLQMHLFATSGDDGSTLRTR---LAQAS 261
Query: 569 IWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGL 628
D+ + A +R ID+L +L G + + A +PAPVQV W+ YP T+G
Sbjct: 262 TLHDVTALGHLATAKHIRHHGIDLLFDLRGWGGGGRPEVFALRPAPVQVNWLAYPGTSGA 321
Query: 629 PTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALTN-GF----I 683
P +DY + D+ A PP + + E ++RL F PS + V P+ T G +
Sbjct: 322 PWMDYVLGDAFALPPALEPFYSEHVLRLQGAF---QPSDTSRVVAEPPSRTQCGLPEQGV 378
Query: 684 TFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLR 743
FNN K+ P+ + +L VP+S L + P D+ R + G+++ R
Sbjct: 379 VLCCFNNSYKLNPQSMARMLAVLREVPDSVLWLLSGPGEADA---RLRAFAHAQGVDAQR 435
Query: 744 VDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVS 803
+ +P L + ++ Y D+ LDT PY TT ++L+ G P +T G A V S
Sbjct: 436 LVFMP-KLPHPQYLARYRHADLFLDTHPYNAHTTASDALWTGCPVLTTPGETFAARVAGS 494
Query: 804 LLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFA 858
L +GL + ++ +V A+ LASD AL L + L S V FA
Sbjct: 495 LNHHLGLDEMNVADDAAFVAKAVALASDPAALTALHARVDVLRRASGVFHMDGFA 549
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 123 bits (308), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 93/370 (25%), Positives = 165/370 (44%), Gaps = 15/370 (4%)
Query: 302 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 361
+G+I + V Y+KAL +A A NL + K A++ Y+ A +P A+A +
Sbjct: 22 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYS 81
Query: 362 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXN 421
N+G K+ ++ A++CY A+ I P F+ + +NL ++ G
Sbjct: 82 NMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK 141
Query: 422 PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMN-------YINE 474
P + +AY NL + + + ++ + I D +NRL +++ ++
Sbjct: 142 PDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLE--KNRLPSVHPHHSMLYPLSH 199
Query: 475 GHDDKLFEAHRDWGKRFMRLYSQ--YTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAP 532
G + E H + + + + Y + K + L +GYVS D+ H S+ +++
Sbjct: 200 GFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYVSSDFGNHPTSHLMQSI 259
Query: 533 LVYHDYQNYXXXXXXXXXXXXXXTIRFREKVMKKGGIWRDIYGID-EKKVAAMVREDKID 591
H+ + FR KVM + + D+ I K A + +D I
Sbjct: 260 PGMHNPDKFEVFCYALSPDDGT---NFRVKVMAEANHFIDLSQIPCNGKAADRIHQDGIH 316
Query: 592 ILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVE 651
ILV + G+T + + A +PAP+Q W+GYP T+G +DY ITD P E +++ E
Sbjct: 317 ILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDQETSPAEVAEQYSE 376
Query: 652 ELIRLPECFL 661
+L +P F
Sbjct: 377 KLAYMPHTFF 386
Score = 107 bits (266), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 98/196 (50%), Gaps = 4/196 (2%)
Query: 683 ITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESL 742
I + +FN L KI P LQ+WA IL VPNS L + P + ++ + +GL
Sbjct: 524 IVYCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGEPNIQQYA---QNMGLPQN 580
Query: 743 RVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGV 802
R+ P + +H++ L D+ LDT G TT + L+ G P VTM G A V
Sbjct: 581 RIIFSP-VAPKEEHVRRGQLADVCLDTPLCNGHTTGMDVLWAGTPMVTMPGETLASRVAA 639
Query: 803 SLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLE 862
S LT +G LIAKN EY +A++L +D+ L +R + SP+ + + + + LE
Sbjct: 640 SQLTCLGCLELIAKNRQEYEDIAVKLGTDLEYLKKVRGKVWKQRISSPLFNTKQYTMELE 699
Query: 863 STYRNMWHRYCKGDVP 878
Y MW Y G+ P
Sbjct: 700 RLYLQMWEHYAAGNKP 715
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 51/157 (32%), Positives = 80/157 (50%), Gaps = 7/157 (4%)
Query: 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172
P +A + + + +++G + EA Y KAL P + A LA VL + G
Sbjct: 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVL-------QQQGK 58
Query: 173 TQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 232
Q+ + Y EA++I P +A AY N+G E+ AL CY +A P +A+A+ N+
Sbjct: 59 LQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLA 118
Query: 233 VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 269
I+K+ G++ AIA Y L + P+F A N+A L
Sbjct: 119 SIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCL 155
Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 84/177 (47%), Gaps = 30/177 (16%)
Query: 222 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRAL 281
P +A++ N+ I + +G++E A+ Y + L V P F A +N+A
Sbjct: 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLA--------------- 50
Query: 282 LLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDM 341
+++ +G + + + +YK+A+ + +ADA N+G EM
Sbjct: 51 ---------------SVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQG 95
Query: 342 AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 398
A+ Y A NP A+A +NL I+KD N+ +A+ Y+ AL +KP+F + NL
Sbjct: 96 ALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLA 152
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/114 (32%), Positives = 62/114 (54%)
Query: 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 219
L +L + GN ++ ++ Y +AL++ P +A A+ NL V + + AL Y++A
Sbjct: 12 LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 71
Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
P +A+AY NMG K D++ A+ CY R + ++P F A +N+A D G
Sbjct: 72 ISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSG 125
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 59/111 (53%)
Query: 354 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXX 413
P A++ NNL I +++ N+++AV Y+ AL + P F+ + +NL V QG
Sbjct: 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 65
Query: 414 XXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 464
+PT+A+AY+N+G ++ + A+ Y + ++I+P +A N
Sbjct: 66 YKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSN 116
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 66/144 (45%), Gaps = 7/144 (4%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
ANI R + +A+ LY LE AH LQ Q + A + EA+++ P
Sbjct: 16 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 75
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
A A+++ G K+ + A + Y +A+ +P++ A LA + D +GN
Sbjct: 76 FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKD-------SGNIP 128
Query: 175 DGIQKYYEALKIDPHYAPAYYNLG 198
+ I Y ALK+ P + AY NL
Sbjct: 129 EAIASYRTALKLKPDFPDAYCNLA 152
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 80/178 (44%), Gaps = 21/178 (11%)
Query: 188 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIAC 247
P +A + NL + E + A+ Y KA P +A A+ N+ + + +G L+ A+
Sbjct: 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 65
Query: 248 YERCLAVSPNFEIAKNNMAIALTDL-----GTKTYGRALLL---FRLNGSNFQSPFFELV 299
Y+ + +SP F A +NM L ++ + Y RA+ + F SN S +
Sbjct: 66 YKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLAS----IH 121
Query: 300 KLEGDINQGVAYYKKALYYNWHYADAMYNLG---------VAYGEMLKFDMAIVFYEL 348
K G+I + +A Y+ AL + DA NL Y E +K ++IV +L
Sbjct: 122 KDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQL 179
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 69/147 (46%), Gaps = 8/147 (5%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
A++L+ + K +AL Y+ + +A+ G L+ + A ++ A++++P
Sbjct: 50 ASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA 109
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPA----AECLAIV--LTDLGTSL- 167
A AH++ ++KD G + EA SY AL P + A A CL IV TD +
Sbjct: 110 FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMK 169
Query: 168 KLAGNTQDGIQKYYEALKIDPHYAPAY 194
KL D ++K + PH++ Y
Sbjct: 170 KLVSIVADQLEK-NRLPSVHPHHSMLY 195
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/136 (37%), Positives = 72/136 (52%)
Query: 323 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 382
A+A YNLG AY + +D AI +Y+ A +P AEA NLG Y + + D+A+E YQ
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 383 ALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSIS 442
AL + P +++ NLG Y QG +P AEA+ NLG Y G
Sbjct: 61 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYD 120
Query: 443 LAIDAYEQCLKIDPDS 458
AI+ Y++ L++DP S
Sbjct: 121 EAIEYYQKALELDPRS 136
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 79/164 (48%), Gaps = 30/164 (18%)
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLF 284
AEA+ N+G Y +GD + AI Y++ L + P A A +LG Y +
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-------SAEAWYNLGNAYYKQ----- 48
Query: 285 RLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIV 344
GD ++ + YY+KAL + A+A YNLG AY + +D AI
Sbjct: 49 ------------------GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIE 90
Query: 345 FYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 388
+Y+ A +P AEA NLG Y + + D+A+E YQ AL + P
Sbjct: 91 YYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
Score = 79.7 bits (195), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 72/141 (51%), Gaps = 7/141 (4%)
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQD 175
A A + G Y +G EA E Y KAL DP A +LG + G+ +
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-------SAEAWYNLGNAYYKQGDYDE 53
Query: 176 GIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY 235
I+ Y +AL++DP A A+YNLG Y + YD A+ Y+KA P AEA+ N+G Y
Sbjct: 54 AIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAY 113
Query: 236 KNRGDLESAIACYERCLAVSP 256
+GD + AI Y++ L + P
Sbjct: 114 YKQGDYDEAIEYYQKALELDP 134
Score = 79.0 bits (193), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 62/104 (59%)
Query: 302 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 361
+GD ++ + YY+KAL + A+A YNLG AY + +D AI +Y+ A +P AEA
Sbjct: 14 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWY 73
Query: 362 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 405
NLG Y + + D+A+E YQ AL + P +++ NLG Y QG
Sbjct: 74 NLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 117
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 74/160 (46%), Gaps = 30/160 (18%)
Query: 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216
A +LG + G+ + I+ Y +AL++DP A A+YNLG Y + YD A+ Y+K
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 217 AALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKT 276
A P AEA+ N+G Y +GD + AI Y++ L + P A A +LG
Sbjct: 61 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-------RSAEAWYNLGNAY 113
Query: 277 YGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKAL 316
Y + GD ++ + YY+KAL
Sbjct: 114 YKQ-----------------------GDYDEAIEYYQKAL 130
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 63/129 (48%), Gaps = 2/129 (1%)
Query: 357 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXX 416
AEA NLG Y + + D+A+E YQ AL + P +++ NLG Y QG
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 417 XXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH 476
+P AEA+ NLG Y G AI+ Y++ L++DP S A N L Y +G
Sbjct: 61 ALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYN--LGNAYYKQGD 118
Query: 477 DDKLFEAHR 485
D+ E ++
Sbjct: 119 YDEAIEYYQ 127
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 62/134 (46%), Gaps = 7/134 (5%)
Query: 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115
N + + +A+ Y+ LE D + EA G Q A + + +A++LDP++
Sbjct: 9 NAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 68
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQD 175
A A + G Y +G EA E Y KAL DP A +LG + G+ +
Sbjct: 69 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-------SAEAWYNLGNAYYKQGDYDE 121
Query: 176 GIQKYYEALKIDPH 189
I+ Y +AL++DP
Sbjct: 122 AIEYYQKALELDPR 135
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 64/104 (61%)
Query: 302 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 361
+GD ++ + YY+KAL + + A+A YNLG AY + +D AI +Y+ A +P+ AEA
Sbjct: 22 QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWY 81
Query: 362 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 405
NLG Y + + D+A+E YQ AL + PN +++ NLG QG
Sbjct: 82 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 59/110 (53%)
Query: 323 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 382
A+A YNLG AY + +D AI +Y+ A +P+ AEA NLG Y + + D+A+E YQ
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 383 ALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLG 432
AL + PN +++ NLG Y QG +P AEA NLG
Sbjct: 69 ALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 118
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 64/117 (54%)
Query: 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216
A +LG + G+ + I+ Y +AL++DP+ A A+YNLG Y + YD A+ Y+K
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 217 AALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
A P AEA+ N+G Y +GD + AI Y++ L + PN AK N+ A G
Sbjct: 69 ALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
Score = 70.1 bits (170), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 40/110 (36%), Positives = 58/110 (52%)
Query: 355 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXX 414
+ AEA NLG Y + + D+A+E YQ AL + PN +++ NLG Y QG
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 415 XXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 464
+P AEA+ NLG Y G AI+ Y++ L++DP++ A QN
Sbjct: 67 QKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQN 116
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 67/130 (51%), Gaps = 8/130 (6%)
Query: 111 LDPQNAC-AHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKL 169
+DP N+ A + G Y +G EA E Y KAL DP+ A +LG +
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-------NAEAWYNLGNAYYK 55
Query: 170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC 229
G+ + I+ Y +AL++DP+ A A+YNLG Y + YD A+ Y+KA P AEA
Sbjct: 56 QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQ 115
Query: 230 NMGVIYKNRG 239
N+G + +G
Sbjct: 116 NLGNAKQKQG 125
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 70/148 (47%), Gaps = 31/148 (20%)
Query: 186 IDP-HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA 244
+DP + A A+YNLG Y + YD A+ Y+KA P AEA+ N+G Y +GD + A
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62
Query: 245 IACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGD 304
I Y++ L + P N A A +LG Y + GD
Sbjct: 63 IEYYQKALELDP-------NNAEAWYNLGNAYYKQ-----------------------GD 92
Query: 305 INQGVAYYKKALYYNWHYADAMYNLGVA 332
++ + YY+KAL + + A+A NLG A
Sbjct: 93 YDEAIEYYQKALELDPNNAEAKQNLGNA 120
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 48/110 (43%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
N + + +A+ Y+ LE D N EA G Q A + + +A++LDP
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLG 164
NA A + G Y +G EA E Y KAL DP+ A + L G
Sbjct: 76 NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 72.8 bits (177), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 62/104 (59%)
Query: 302 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 361
+GD ++ + YY+KAL + A+A YNLG AY + +D AI +Y+ A P+ AEA
Sbjct: 22 QGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWY 81
Query: 362 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 405
NLG Y + + D+A+E YQ AL + PN +++ NLG QG
Sbjct: 82 NLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGNAKQKQG 125
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 43/110 (39%), Positives = 57/110 (51%)
Query: 323 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 382
A+A YNLG AY + +D AI +Y+ A P+ AEA NLG Y + + D+A+E YQ
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 383 ALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLG 432
AL + PN +++ NLG Y QG P AEA NLG
Sbjct: 69 ALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLG 118
Score = 69.3 bits (168), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 63/117 (53%)
Query: 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216
A +LG + G+ + I+ Y +AL++ P+ A A+YNLG Y + YD A+ Y+K
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 217 AALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
A P AEA+ N+G Y +GD + AI Y++ L + PN AK N+ A G
Sbjct: 69 ALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGNAKQKQG 125
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 65/130 (50%), Gaps = 8/130 (6%)
Query: 111 LDPQNAC-AHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKL 169
+DP N+ A + G Y +G EA E Y KAL P+ A +LG +
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPN-------NAEAWYNLGNAYYK 55
Query: 170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC 229
G+ + I+ Y +AL++ P+ A A+YNLG Y + YD A+ Y+KA P AEA
Sbjct: 56 QGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQ 115
Query: 230 NMGVIYKNRG 239
N+G + +G
Sbjct: 116 NLGNAKQKQG 125
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 61/132 (46%), Gaps = 31/132 (23%)
Query: 186 IDP-HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA 244
+DP + A A+YNLG Y + YD A+ Y+KA P AEA+ N+G Y +GD + A
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEA 62
Query: 245 IACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGD 304
I Y++ L + P N A A +LG Y + GD
Sbjct: 63 IEYYQKALELYP-------NNAEAWYNLGNAYYKQ-----------------------GD 92
Query: 305 INQGVAYYKKAL 316
++ + YY+KAL
Sbjct: 93 YDEAIEYYQKAL 104
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 45/110 (40%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
N + + +A+ Y+ LE N EA G Q A + + +A++L P
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPN 75
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLG 164
NA A + G Y +G EA E Y KAL P+ A + L G
Sbjct: 76 NAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGNAKQKQG 125
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 69.7 bits (169), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 61/117 (52%)
Query: 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216
A +LG + G+ Q I+ Y +AL++DP+ A A+YNLG Y + Y A+ Y+K
Sbjct: 9 AEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQK 68
Query: 217 AALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
A P A+A+ G Y +GD + AI Y++ L + PN AK N+ A G
Sbjct: 69 ALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQG 125
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 58/104 (55%)
Query: 302 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 361
+GD + + YY+KAL + + A A YNLG AY + + AI +Y+ A +P+ A+A
Sbjct: 22 QGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWY 81
Query: 362 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 405
G Y + + KA+E YQ AL + PN +++ NLG QG
Sbjct: 82 RRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQG 125
Score = 63.2 bits (152), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 54/110 (49%)
Query: 355 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXX 414
+ AEA NLG Y + + KA+E YQ AL + PN + + NLG Y QG
Sbjct: 7 NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYY 66
Query: 415 XXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 464
+P A+A+ G Y G AI+ Y++ L++DP++ A QN
Sbjct: 67 QKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQN 116
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 53/110 (48%)
Query: 323 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 382
A+A NLG AY + + AI +Y+ A +P+ A A NLG Y + + KA+E YQ
Sbjct: 9 AEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQK 68
Query: 383 ALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLG 432
AL + PN +++ G Y QG +P A+A NLG
Sbjct: 69 ALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLG 118
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/130 (32%), Positives = 64/130 (49%), Gaps = 8/130 (6%)
Query: 111 LDPQNAC-AHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKL 169
+DP N+ A + G Y +G +A E Y KAL DP+ A +LG +
Sbjct: 3 MDPGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPN-------NASAWYNLGNAYYK 55
Query: 170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC 229
G+ Q I+ Y +AL++DP+ A A+Y G Y + Y A+ Y+KA P A+A
Sbjct: 56 QGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQ 115
Query: 230 NMGVIYKNRG 239
N+G + +G
Sbjct: 116 NLGNAKQKQG 125
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 62/140 (44%), Gaps = 30/140 (21%)
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLF 284
AEA+ N+G Y +GD + AI Y++ L + P N A A +LG Y
Sbjct: 9 AEAWKNLGNAYYKQGDYQKAIEYYQKALELDP-------NNASAWYNLGNAYY------- 54
Query: 285 RLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIV 344
+GD + + YY+KAL + + A A Y G AY + + AI
Sbjct: 55 ----------------KQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIE 98
Query: 345 FYELAFHFNPHCAEACNNLG 364
Y+ A +P+ A+A NLG
Sbjct: 99 DYQKALELDPNNAKAKQNLG 118
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 58/122 (47%), Gaps = 8/122 (6%)
Query: 78 DSGN-VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAA 136
D GN EA G Q + A + + +A++LDP NA A + G Y +G +A
Sbjct: 4 DPGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAI 63
Query: 137 ESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYN 196
E Y KAL DP+ A G + G+ Q I+ Y +AL++DP+ A A N
Sbjct: 64 EYYQKALELDPN-------NAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQN 116
Query: 197 LG 198
LG
Sbjct: 117 LG 118
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 46/110 (41%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
N + + A+ Y+ LE D N A G Q + A + + +A++LDP
Sbjct: 16 GNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPN 75
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLG 164
NA A G Y +G +A E Y KAL DP+ A + L G
Sbjct: 76 NAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNAKQKQG 125
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 186 IDP-HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA 244
+DP + A A+ NLG Y + Y A+ Y+KA P A A+ N+G Y +GD + A
Sbjct: 3 MDPGNSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKA 62
Query: 245 IACYERCLAVSPN 257
I Y++ L + PN
Sbjct: 63 IEYYQKALELDPN 75
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 50/83 (60%)
Query: 323 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 382
A+A YNLG AY + +D AI +Y+ A +P+ AEA NLG Y + + D+A+E YQ
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 383 ALSIKPNFSQSLNNLGVVYTVQG 405
AL + PN +++ NLG QG
Sbjct: 69 ALELDPNNAEAKQNLGNAKQKQG 91
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 186 IDP-HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA 244
+DP + A A+YNLG Y + YD A+ Y+KA P AEA+ N+G Y +GD + A
Sbjct: 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 62
Query: 245 IACYERCLAVSPNFEIAKNNMAIALTDLG 273
I Y++ L + PN AK N+ A G
Sbjct: 63 IEYYQKALELDPNNAEAKQNLGNAKQKQG 91
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 41/63 (65%)
Query: 302 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 361
+GD ++ + YY+KAL + + A+A YNLG AY + +D AI +Y+ A +P+ AEA
Sbjct: 22 QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQ 81
Query: 362 NLG 364
NLG
Sbjct: 82 NLG 84
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 46/83 (55%)
Query: 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216
A +LG + G+ + I+ Y +AL++DP+ A A+YNLG Y + YD A+ Y+K
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQK 68
Query: 217 AALERPMYAEAYCNMGVIYKNRG 239
A P AEA N+G + +G
Sbjct: 69 ALELDPNNAEAKQNLGNAKQKQG 91
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 39/78 (50%)
Query: 355 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXX 414
+ AEA NLG Y + + D+A+E YQ AL + PN +++ NLG Y QG
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 415 XXXXXXNPTYAEAYNNLG 432
+P AEA NLG
Sbjct: 67 QKALELDPNNAEAKQNLG 84
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 78 DSGN-VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAA 136
D GN EA G Q A + + +A++LDP NA A + G Y +G EA
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAI 63
Query: 137 ESYHKALSADPSYKPAAECLAIVLTDLG 164
E Y KAL DP+ A + L G
Sbjct: 64 EYYQKALELDPNNAEAKQNLGNAKQKQG 91
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 48/108 (44%), Gaps = 30/108 (27%)
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLF 284
AEA+ N+G Y +GD + AI Y++ L + PN A A +LG Y
Sbjct: 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-------NAEAWYNLGNAYY------- 54
Query: 285 RLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA 332
+GD ++ + YY+KAL + + A+A NLG A
Sbjct: 55 ----------------KQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 34/76 (44%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ 114
N + + +A+ Y+ LE D N EA G Q A + + +A++LDP
Sbjct: 16 GNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 75
Query: 115 NACAHTHCGILYKDEG 130
NA A + G + +G
Sbjct: 76 NAEAKQNLGNAKQKQG 91
>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein
pdb|3VTX|B Chain B, Crystal Structure Of Mama Protein
pdb|3VTY|A Chain A, Crystal Structure Of Mama
pdb|3VTY|B Chain B, Crystal Structure Of Mama
pdb|3VTY|C Chain C, Crystal Structure Of Mama
pdb|3VTY|D Chain D, Crystal Structure Of Mama
Length = 184
Score = 63.9 bits (154), Expect = 4e-10, Method: Composition-based stats.
Identities = 43/145 (29%), Positives = 71/145 (48%), Gaps = 7/145 (4%)
Query: 101 AFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160
A ++ + +K DP N G Y D G +A ES K + D + +AE I
Sbjct: 24 AIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT---SAEAYYI-- 78
Query: 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE 220
LG++ + Q I A+ ++ YA AYY LG+VY + ++D A+ YEK
Sbjct: 79 --LGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISI 136
Query: 221 RPMYAEAYCNMGVIYKNRGDLESAI 245
+P + AY ++G+ Y+ +G + A+
Sbjct: 137 KPGFIRAYQSIGLAYEGKGLRDEAV 161
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 39/149 (26%), Positives = 69/149 (46%), Gaps = 7/149 (4%)
Query: 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI 186
+ +G A +Y K L ADP+ L LG + G D I+ + + +
Sbjct: 16 RTKGDFDGAIRAYKKVLKADPNNVET-------LLKLGKTYMDIGLPNDAIESLKKFVVL 68
Query: 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIA 246
D A AYY LG + + A+ ++A +YA+AY +G++Y + G+ + AI
Sbjct: 69 DTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIE 128
Query: 247 CYERCLAVSPNFEIAKNNMAIALTDLGTK 275
YE+ +++ P F A ++ +A G +
Sbjct: 129 AYEKTISIKPGFIRAYQSIGLAYEGKGLR 157
Score = 53.9 bits (128), Expect = 4e-07, Method: Composition-based stats.
Identities = 41/166 (24%), Positives = 74/166 (44%), Gaps = 22/166 (13%)
Query: 228 YCNMGVIYKNRGDLESAIACYERCLAVSPN-----FEIAKNNMAIALTDLGTKTYGRALL 282
Y ++G + +GD + AI Y++ L PN ++ K M I L + ++ + ++
Sbjct: 8 YMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV 67
Query: 283 L--------FRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYG 334
L + L +NF + + + ++A+ N YADA Y LG+ Y
Sbjct: 68 LDTTSAEAYYILGSANF---------MIDEKQAAIDALQRAIALNTVYADAYYKLGLVYD 118
Query: 335 EMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 380
M + D AI YE P A ++G+ Y+ + D+AV+ +
Sbjct: 119 SMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYF 164
Score = 43.5 bits (101), Expect = 5e-04, Method: Composition-based stats.
Identities = 36/141 (25%), Positives = 59/141 (41%), Gaps = 2/141 (1%)
Query: 339 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 398
FD AI Y+ +P+ E LG Y D + A+E + + + +++ LG
Sbjct: 21 FDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILG 80
Query: 399 VVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 458
+ N YA+AY LG++Y G AI+AYE+ + I P
Sbjct: 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGF 140
Query: 459 RNAGQNRLLAMNYINEGHDDK 479
A Q+ + + Y +G D+
Sbjct: 141 IRAYQS--IGLAYEGKGLRDE 159
Score = 33.5 bits (75), Expect = 0.53, Method: Composition-based stats.
Identities = 21/81 (25%), Positives = 39/81 (48%)
Query: 78 DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAE 137
D+ + EA+ G M + + A D+ A+ L+ A A+ G++Y G +A E
Sbjct: 69 DTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIE 128
Query: 138 SYHKALSADPSYKPAAECLAI 158
+Y K +S P + A + + +
Sbjct: 129 AYEKTISIKPGFIRAYQSIGL 149
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 40/66 (60%)
Query: 323 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 382
A+A YNLG AY + +D AI +Y+ A +P AEA NLG Y + + D+A+E YQ
Sbjct: 3 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 62
Query: 383 ALSIKP 388
AL + P
Sbjct: 63 ALELDP 68
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 38/66 (57%)
Query: 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250
A A+YNLG Y + YD A+ Y+KA P AEA+ N+G Y +GD + AI Y++
Sbjct: 3 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 62
Query: 251 CLAVSP 256
L + P
Sbjct: 63 ALELDP 68
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 29/50 (58%)
Query: 356 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 405
AEA NLG Y + + D+A+E YQ AL + P +++ NLG Y QG
Sbjct: 2 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 51
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 35/61 (57%)
Query: 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216
A +LG + G+ + I+ Y +AL++DP A A+YNLG Y + YD A+ Y+K
Sbjct: 3 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 62
Query: 217 A 217
A
Sbjct: 63 A 63
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 33/55 (60%)
Query: 302 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC 356
+GD ++ + YY+KAL + A+A YNLG AY + +D AI +Y+ A +P
Sbjct: 16 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 70
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 34/68 (50%)
Query: 80 GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESY 139
G+ EA G Q A + + +A++LDP++A A + G Y +G EA E Y
Sbjct: 1 GSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 60
Query: 140 HKALSADP 147
KAL DP
Sbjct: 61 QKALELDP 68
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 30/92 (32%)
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLF 284
AEA+ N+G Y +GD + AI Y++ L + P A A +LG Y +
Sbjct: 3 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-------RSAEAWYNLGNAYYKQ----- 50
Query: 285 RLNGSNFQSPFFELVKLEGDINQGVAYYKKAL 316
GD ++ + YY+KAL
Sbjct: 51 ------------------GDYDEAIEYYQKAL 64
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 425 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAH 484
AEA+ NLG Y G AI+ Y++ L++DP S A N L Y +G D+ E +
Sbjct: 3 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYN--LGNAYYKQGDYDEAIEYY 60
Query: 485 R 485
+
Sbjct: 61 Q 61
Score = 34.7 bits (78), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174
+A A + G Y +G EA E Y KAL DP A +LG + G+
Sbjct: 2 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-------SAEAWYNLGNAYYKQGDYD 54
Query: 175 DGIQKYYEALKIDPH 189
+ I+ Y +AL++DP
Sbjct: 55 EAIEYYQKALELDPR 69
>pdb|3R9A|B Chain B, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
pdb|3R9A|D Chain D, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
Length = 328
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 94/226 (41%), Gaps = 26/226 (11%)
Query: 66 DALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125
+A+ L+E +++D ++EA G LA + ++L P N A +
Sbjct: 42 NAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVS 101
Query: 126 YKDEGRLVEAAESYHKALSADPSY----------------KPAAECLAIVLTDLGTSLKL 169
+ +E +A E+ L P+Y P+ L +L+D SL L
Sbjct: 102 FTNESLQRQACETLRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD---SLFL 158
Query: 170 AGNTQDGIQKYYEALKIDPHY--APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEA 227
+ + + A+++DP LGV+++ +YD A+ C+ A RP
Sbjct: 159 -----EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLL 213
Query: 228 YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
+ +G N E A+A Y R L + P + ++ N+ I+ +LG
Sbjct: 214 WNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLG 259
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 52/250 (20%), Positives = 94/250 (37%), Gaps = 13/250 (5%)
Query: 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 269
A+ +E A + P + EA+ +G AI+ RCL + P+ + A +A++
Sbjct: 43 AVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSF 102
Query: 270 TDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNL 329
T+ + L L + + LV + G +D+++
Sbjct: 103 TNESLQRQACETLRDWLR---YTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLF-- 157
Query: 330 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 389
+ E+ F A+ + + C LGV++ DKAV+C+ ALS++PN
Sbjct: 158 -LEVKEL--FLAAVRLDPTSIDPDVQCG-----LGVLFNLSGEYDKAVDCFTAALSVRPN 209
Query: 390 FSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYE 449
N LG P Y + NLG+ + G+ A++ +
Sbjct: 210 DYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFL 269
Query: 450 QCLKIDPDSR 459
+ L + SR
Sbjct: 270 EALNMQRKSR 279
Score = 38.9 bits (89), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 421 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKL 480
+P + EA+ LG + LAI A +CL++ PD++ A LA+++ NE +
Sbjct: 54 DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMA--LAVSFTNESLQRQA 111
Query: 481 FEAHRDW 487
E RDW
Sbjct: 112 CETLRDW 118
Score = 33.5 bits (75), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 49/122 (40%), Gaps = 7/122 (5%)
Query: 65 VDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124
V L L + L+ S + + G G+ + A D F+ A+ + P + G
Sbjct: 160 VKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGA 219
Query: 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEAL 184
+ + EA +Y +AL P Y + L I +LG ++ ++ + EAL
Sbjct: 220 TLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAH-------REAVEHFLEAL 272
Query: 185 KI 186
+
Sbjct: 273 NM 274
>pdb|4EQF|A Chain A, Trip8b-1a#206-567 Interacting With The Carboxy-Terminal
Seven Residues Of Hcn2
Length = 365
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 83/210 (39%), Gaps = 34/210 (16%)
Query: 215 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD--- 271
E A L+ P AEA+ +G+ + ++AI +RCL + PN A +A++ T+
Sbjct: 89 EAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSH 148
Query: 272 --------------------LGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAY 311
L G L R++ S S E VK
Sbjct: 149 QQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVK---------EL 199
Query: 312 YKKALYYNWHYADA--MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 369
Y +A + N D LGV + +F+ AI + A P N LG +
Sbjct: 200 YLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLAN 259
Query: 370 RDNLDKAVECYQMALSIKPNFSQSLNNLGV 399
D ++AVE Y AL I+P F +S NLG+
Sbjct: 260 GDRSEEAVEAYTRALEIQPGFIRSRYNLGI 289
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 85/211 (40%), Gaps = 11/211 (5%)
Query: 72 EIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGR 131
E + +D G+ EA GI + A + ++L P N A + Y +
Sbjct: 89 EAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSH 148
Query: 132 LVEAAESYHKALSADPSYKPAAECL--AIVLTDLGTSLKLAGNTQDGIQKYY-EALK--- 185
+A E+ + +P YK + + LT + + + +G+++ Y EA
Sbjct: 149 QQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNG 208
Query: 186 --IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLES 243
IDP LGV++ +++ A+ + A RP + +G N E
Sbjct: 209 DMIDPDLQTG---LGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEE 265
Query: 244 AIACYERCLAVSPNFEIAKNNMAIALTDLGT 274
A+ Y R L + P F ++ N+ I+ +LG
Sbjct: 266 AVEAYTRALEIQPGFIRSRYNLGISCINLGA 296
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 7/96 (7%)
Query: 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQ 178
T G+L+ G A ++++ AL+ P + LG +L +++ ++
Sbjct: 216 QTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYS-------LWNRLGATLANGDRSEEAVE 268
Query: 179 KYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 214
Y AL+I P + + YNLG+ L Y A+ +
Sbjct: 269 AYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNF 304
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 8/100 (8%)
Query: 309 VAYYKKALYYNWHYADAMYNLGVAYGEMLK------FDMAIVFYELAFHFNPHCAEACNN 362
V+ +K Y+ H + + A+ E LK + I+F E A +P AEA
Sbjct: 47 VSASEKGYYF--HTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQF 104
Query: 363 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYT 402
LG+ + +N A+ Q L ++PN ++L L V YT
Sbjct: 105 LGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYT 144
Score = 36.2 bits (82), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 421 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKL 480
+P AEA+ LG+ + + AI A ++CL++ P++ A LA++Y N H
Sbjct: 95 DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALM--ALAVSYTNTSHQQDA 152
Query: 481 FEAHRDWGKR 490
EA ++W K+
Sbjct: 153 CEALKNWIKQ 162
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 2/109 (1%)
Query: 85 HIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALS 144
G G+ + A D+F+ A+ + P++ G + R EA E+Y +AL
Sbjct: 216 QTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALE 275
Query: 145 ADPSYKPAAECLAIVLTDLGTSLKLAGN--TQDGIQKYYEALKIDPHYA 191
P + + L I +LG + N T +Q+ + PH A
Sbjct: 276 IQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPA 324
Score = 33.1 bits (74), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 35/168 (20%), Positives = 60/168 (35%), Gaps = 12/168 (7%)
Query: 302 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 361
EGD+ + + + A+ + A+A LG+ E AIV + P+ +A
Sbjct: 78 EGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALM 137
Query: 362 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXN 421
L V Y + + A E + + P + + N +
Sbjct: 138 ALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVK 197
Query: 422 PTYAEAYNN------------LGVLYRDAGSISLAIDAYEQCLKIDPD 457
Y EA + LGVL+ +G + AIDA+ L + P+
Sbjct: 198 ELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE 245
>pdb|2C0L|A Chain A, Tpr Domain Of Human Pex5p In Complex With Human Mscp2
Length = 305
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 93/227 (40%), Gaps = 26/227 (11%)
Query: 66 DALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125
+A+ L+E +++D ++EA G LA + ++L P N A +
Sbjct: 19 NAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVS 78
Query: 126 YKDEGRLVEAAESYHKALSADPSYK----------------PAAECLAIVLTDLGTSLKL 169
+ +E +A E L P+Y P+ L +L+D SL L
Sbjct: 79 FTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD---SLFL 135
Query: 170 AGNTQDGIQKYYEALKIDPHY--APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEA 227
+ + + A+++DP LGV+++ +YD A+ C+ A RP
Sbjct: 136 -----EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLL 190
Query: 228 YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGT 274
+ +G N E A+A Y R L + P + ++ N+ I+ +LG
Sbjct: 191 WNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGA 237
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 52/250 (20%), Positives = 95/250 (38%), Gaps = 13/250 (5%)
Query: 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 269
A+ +E A + P + EA+ +G AI+ RCL + P+ + A +A++
Sbjct: 20 AVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSF 79
Query: 270 TDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNL 329
T+ + +L L + + LV + G +D+++
Sbjct: 80 TNESLQRQACEILRDWLR---YTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLF-- 134
Query: 330 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 389
+ E+ F A+ + + C LGV++ DKAV+C+ ALS++PN
Sbjct: 135 -LEVKEL--FLAAVRLDPTSIDPDVQCG-----LGVLFNLSGEYDKAVDCFTAALSVRPN 186
Query: 390 FSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYE 449
N LG P Y + NLG+ + G+ A++ +
Sbjct: 187 DYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFL 246
Query: 450 QCLKIDPDSR 459
+ L + SR
Sbjct: 247 EALNMQRKSR 256
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 421 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKL 480
+P + EA+ LG + LAI A +CL++ PD++ A LA+++ NE +
Sbjct: 31 DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMA--LAVSFTNESLQRQA 88
Query: 481 FEAHRDW 487
E RDW
Sbjct: 89 CEILRDW 95
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 49/122 (40%), Gaps = 7/122 (5%)
Query: 65 VDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124
V L L + L+ S + + G G+ + A D F+ A+ + P + G
Sbjct: 137 VKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGA 196
Query: 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEAL 184
+ + EA +Y +AL P Y + L I +LG ++ ++ + EAL
Sbjct: 197 TLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAH-------REAVEHFLEAL 249
Query: 185 KI 186
+
Sbjct: 250 NM 251
>pdb|2C0M|A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|B Chain B, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|C Chain C, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|F Chain F, Apo Form Of The Tpr Domain Of The Pex5p Receptor
Length = 319
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 93/227 (40%), Gaps = 26/227 (11%)
Query: 66 DALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125
+A+ L+E +++D ++EA G LA + ++L P N A +
Sbjct: 33 NAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVS 92
Query: 126 YKDEGRLVEAAESYHKALSADPSY----------------KPAAECLAIVLTDLGTSLKL 169
+ +E +A E L P+Y P+ L +L+D SL L
Sbjct: 93 FTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD---SLFL 149
Query: 170 AGNTQDGIQKYYEALKIDPHY--APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEA 227
+ + + A+++DP LGV+++ +YD A+ C+ A RP
Sbjct: 150 -----EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLL 204
Query: 228 YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGT 274
+ +G N E A+A Y R L + P + ++ N+ I+ +LG
Sbjct: 205 WNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGA 251
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/250 (20%), Positives = 95/250 (38%), Gaps = 13/250 (5%)
Query: 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 269
A+ +E A + P + EA+ +G AI+ RCL + P+ + A +A++
Sbjct: 34 AVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSF 93
Query: 270 TDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNL 329
T+ + +L L + + LV + G +D+++
Sbjct: 94 TNESLQRQACEILRDWLR---YTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLF-- 148
Query: 330 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 389
+ E+ F A+ + + C LGV++ DKAV+C+ ALS++PN
Sbjct: 149 -LEVKEL--FLAAVRLDPTSIDPDVQCG-----LGVLFNLSGEYDKAVDCFTAALSVRPN 200
Query: 390 FSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYE 449
N LG P Y + NLG+ + G+ A++ +
Sbjct: 201 DYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFL 260
Query: 450 QCLKIDPDSR 459
+ L + SR
Sbjct: 261 EALNMQRKSR 270
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 421 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKL 480
+P + EA+ LG + LAI A +CL++ PD++ A LA+++ NE +
Sbjct: 45 DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMA--LAVSFTNESLQRQA 102
Query: 481 FEAHRDW 487
E RDW
Sbjct: 103 CEILRDW 109
Score = 33.5 bits (75), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 49/122 (40%), Gaps = 7/122 (5%)
Query: 65 VDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124
V L L + L+ S + + G G+ + A D F+ A+ + P + G
Sbjct: 151 VKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGA 210
Query: 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEAL 184
+ + EA +Y +AL P Y + L I +LG ++ ++ + EAL
Sbjct: 211 TLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAH-------REAVEHFLEAL 263
Query: 185 KI 186
+
Sbjct: 264 NM 265
>pdb|2J9Q|A Chain A, A Novel Conformation For The Tpr Domain Of Pex5p
pdb|2J9Q|B Chain B, A Novel Conformation For The Tpr Domain Of Pex5p
Length = 328
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 93/226 (41%), Gaps = 26/226 (11%)
Query: 66 DALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125
+A+ L+E +++D ++EA G LA + ++L P N A +
Sbjct: 42 NAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVS 101
Query: 126 YKDEGRLVEAAESYHKALSADPSY----------------KPAAECLAIVLTDLGTSLKL 169
+ +E +A E L P+Y P+ L +L+D SL L
Sbjct: 102 FTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD---SLFL 158
Query: 170 AGNTQDGIQKYYEALKIDPHY--APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEA 227
+ + + A+++DP LGV+++ +YD A+ C+ A RP
Sbjct: 159 -----EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLL 213
Query: 228 YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
+ +G N E A+A Y R L + P + ++ N+ I+ +LG
Sbjct: 214 WNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLG 259
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/250 (20%), Positives = 95/250 (38%), Gaps = 13/250 (5%)
Query: 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 269
A+ +E A + P + EA+ +G AI+ RCL + P+ + A +A++
Sbjct: 43 AVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSF 102
Query: 270 TDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNL 329
T+ + +L L + + LV + G +D+++
Sbjct: 103 TNESLQRQACEILRDWLR---YTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLF-- 157
Query: 330 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 389
+ E+ F A+ + + C LGV++ DKAV+C+ ALS++PN
Sbjct: 158 -LEVKEL--FLAAVRLDPTSIDPDVQCG-----LGVLFNLSGEYDKAVDCFTAALSVRPN 209
Query: 390 FSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYE 449
N LG P Y + NLG+ + G+ A++ +
Sbjct: 210 DYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFL 269
Query: 450 QCLKIDPDSR 459
+ L + SR
Sbjct: 270 EALNMQRKSR 279
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 421 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKL 480
+P + EA+ LG + LAI A +CL++ PD++ A LA+++ NE +
Sbjct: 54 DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMA--LAVSFTNESLQRQA 111
Query: 481 FEAHRDW 487
E RDW
Sbjct: 112 CEILRDW 118
Score = 33.9 bits (76), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 49/122 (40%), Gaps = 7/122 (5%)
Query: 65 VDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124
V L L + L+ S + + G G+ + A D F+ A+ + P + G
Sbjct: 160 VKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGA 219
Query: 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEAL 184
+ + EA +Y +AL P Y + L I +LG ++ ++ + EAL
Sbjct: 220 TLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAH-------REAVEHFLEAL 272
Query: 185 KI 186
+
Sbjct: 273 NM 274
>pdb|1FCH|A Chain A, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
pdb|1FCH|B Chain B, Crystal Structure Of The Pts1 Complexed To The Tpr Region
Of Human Pex5
Length = 368
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 93/227 (40%), Gaps = 26/227 (11%)
Query: 66 DALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125
+A+ L+E +++D ++EA G LA + ++L P N A +
Sbjct: 82 NAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVS 141
Query: 126 YKDEGRLVEAAESYHKALSADPSY----------------KPAAECLAIVLTDLGTSLKL 169
+ +E +A E L P+Y P+ L +L+D SL L
Sbjct: 142 FTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD---SLFL 198
Query: 170 AGNTQDGIQKYYEALKIDPHY--APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEA 227
+ + + A+++DP LGV+++ +YD A+ C+ A RP
Sbjct: 199 -----EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLL 253
Query: 228 YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGT 274
+ +G N E A+A Y R L + P + ++ N+ I+ +LG
Sbjct: 254 WNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGA 300
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/250 (20%), Positives = 95/250 (38%), Gaps = 13/250 (5%)
Query: 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 269
A+ +E A + P + EA+ +G AI+ RCL + P+ + A +A++
Sbjct: 83 AVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSF 142
Query: 270 TDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNL 329
T+ + +L L + + LV + G +D+++
Sbjct: 143 TNESLQRQACEILRDWLR---YTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLF-- 197
Query: 330 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 389
+ E+ F A+ + + C LGV++ DKAV+C+ ALS++PN
Sbjct: 198 -LEVKEL--FLAAVRLDPTSIDPDVQCG-----LGVLFNLSGEYDKAVDCFTAALSVRPN 249
Query: 390 FSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYE 449
N LG P Y + NLG+ + G+ A++ +
Sbjct: 250 DYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFL 309
Query: 450 QCLKIDPDSR 459
+ L + SR
Sbjct: 310 EALNMQRKSR 319
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 421 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKL 480
+P + EA+ LG + LAI A +CL++ PD++ A LA+++ NE +
Sbjct: 94 DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMA--LAVSFTNESLQRQA 151
Query: 481 FEAHRDW 487
E RDW
Sbjct: 152 CEILRDW 158
Score = 33.1 bits (74), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 49/122 (40%), Gaps = 7/122 (5%)
Query: 65 VDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124
V L L + L+ S + + G G+ + A D F+ A+ + P + G
Sbjct: 200 VKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGA 259
Query: 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEAL 184
+ + EA +Y +AL P Y + L I +LG ++ ++ + EAL
Sbjct: 260 TLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAH-------REAVEHFLEAL 312
Query: 185 KI 186
+
Sbjct: 313 NM 314
>pdb|3CVQ|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (tbpex5)complexed
To Pts1 Peptide (7- Skl)
Length = 327
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 91/226 (40%), Gaps = 19/226 (8%)
Query: 74 VLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLV 133
V +K+ EA G+ LA + + A LDP + H + + +E
Sbjct: 47 VCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARALDPADIAVHAALAVSHTNEHNAN 106
Query: 134 EAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQD----GIQKYYE------- 182
A S L + P Y+ D+ L ++D +Y E
Sbjct: 107 AALASLRAWLLSQPQYEQLGSVNLQADVDID---DLNVQSEDFFFAAPNEYRECRTLLHA 163
Query: 183 ALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLE 242
AL+++P+ A + +LGV+Y+ YD+A +A RP A+ + +G N +
Sbjct: 164 ALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQ 223
Query: 243 SAIACYERCLAVSPNFEIAKNNMAIALT-----DLGTKTYGRALLL 283
A+ Y R L ++P + NMA++ + DL K RA+ +
Sbjct: 224 EALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM 269
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 38/96 (39%)
Query: 349 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXX 408
A NP+ A+ +LGV+Y +N D A + A+ ++P+ +Q N LG
Sbjct: 164 ALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQ 223
Query: 409 XXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLA 444
NP Y N+ V Y + LA
Sbjct: 224 EALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLA 259
Score = 36.6 bits (83), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Query: 378 ECYQM---ALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVL 434
EC + AL + PN +Q +LGV+Y + P A+ +N LG
Sbjct: 156 ECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGAT 215
Query: 435 YRDAGSISLAIDAYEQCLKIDP 456
+ A+DAY + L I+P
Sbjct: 216 LANGNRPQEALDAYNRALDINP 237
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 31/127 (24%)
Query: 217 AALE-RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK 275
AALE P A+ + ++GV+Y + +SA A R + + P+ N + L
Sbjct: 163 AALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLA----- 217
Query: 276 TYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE 335
NG+ Q + + Y +AL N Y MYN+ V+Y
Sbjct: 218 -----------NGNRPQ--------------EALDAYNRALDINPGYVRVMYNMAVSYSN 252
Query: 336 MLKFDMA 342
M ++D+A
Sbjct: 253 MSQYDLA 259
>pdb|3CV0|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphoglucoisomerase (Pgi) Pts1 Peptide
pdb|3CVL|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphofructokinase (Pfk) Pts1 Peptide
pdb|3CVN|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Glyceraldehyde-3-Phosphate Dehydrogenase
(Gapdh) Pts1 Peptide
pdb|3CVP|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To Pts1 Peptide (10-Skl)
Length = 327
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 84/200 (42%), Gaps = 19/200 (9%)
Query: 100 LAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV 159
LA + + A LDP++ H + + +E A S L + P Y+
Sbjct: 73 LAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQA 132
Query: 160 LTDLGTSLKLAGNTQD----GIQKYYE-------ALKIDPHYAPAYYNLGVVYSELMQYD 208
D+ L ++D +Y E AL+++P+ A + +LGV+Y+ YD
Sbjct: 133 DVDID---DLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYD 189
Query: 209 TALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 268
+A +A RP A+ + +G N + A+ Y R L ++P + NMA++
Sbjct: 190 SAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVS 249
Query: 269 LT-----DLGTKTYGRALLL 283
+ DL K RA+ +
Sbjct: 250 YSNMSQYDLAAKQLVRAIYM 269
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 38/96 (39%)
Query: 349 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXX 408
A NP+ A+ +LGV+Y +N D A + A+ ++P+ +Q N LG
Sbjct: 164 ALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQ 223
Query: 409 XXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLA 444
NP Y N+ V Y + LA
Sbjct: 224 EALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLA 259
Score = 36.6 bits (83), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 3/82 (3%)
Query: 378 ECYQM---ALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVL 434
EC + AL + PN +Q +LGV+Y + P A+ +N LG
Sbjct: 156 ECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGAT 215
Query: 435 YRDAGSISLAIDAYEQCLKIDP 456
+ A+DAY + L I+P
Sbjct: 216 LANGNRPQEALDAYNRALDINP 237
Score = 34.3 bits (77), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 52/127 (40%), Gaps = 31/127 (24%)
Query: 217 AALE-RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK 275
AALE P A+ + ++GV+Y + +SA A R + + P+ N + L
Sbjct: 163 AALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLA----- 217
Query: 276 TYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE 335
NG+ Q + + Y +AL N Y MYN+ V+Y
Sbjct: 218 -----------NGNRPQ--------------EALDAYNRALDINPGYVRVMYNMAVSYSN 252
Query: 336 MLKFDMA 342
M ++D+A
Sbjct: 253 MSQYDLA 259
>pdb|3Q3E|A Chain A, Crystal Structure Of The Actinobacillus Pleuropneumoniae
Hmw1c Glycosyltransferase
pdb|3Q3E|B Chain B, Crystal Structure Of The Actinobacillus Pleuropneumoniae
Hmw1c Glycosyltransferase
pdb|3Q3H|A Chain A, Crystal Structure Of The Actinobacillus Pleuropneumoniae
Hmw1c Glycosyltransferase In Complex With Udp-Glc
pdb|3Q3H|B Chain B, Crystal Structure Of The Actinobacillus Pleuropneumoniae
Hmw1c Glycosyltransferase In Complex With Udp-Glc
pdb|3Q3I|A Chain A, Crystal Structure Of The Actinobacillus Pleuropneumoniae
Hmw1c Glycosyltransferase In The Presence Of Peptide
N1131
pdb|3Q3I|B Chain B, Crystal Structure Of The Actinobacillus Pleuropneumoniae
Hmw1c Glycosyltransferase In The Presence Of Peptide
N1131
Length = 631
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 68/262 (25%), Positives = 108/262 (41%), Gaps = 31/262 (11%)
Query: 613 APVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPV 672
AP+Q +G+P TT I+Y I + D +++ E L+RLP+ L Y PS A
Sbjct: 373 APIQAIALGHPATTHSDFIEYVIVED--DYVGSEECFSETLLRLPKDALPYVPSALAPEK 430
Query: 673 CPTPALTN-GFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCC----DSVR 727
N + G + K+ P L+ I R VK + +
Sbjct: 431 VDYLLRENPEVVNIGIASTTMKLNPYFLEALKAI-----RDRAKVKVHFHFALGQSNGIT 485
Query: 728 H----RFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLY 783
H RF+ + LG + P H +++ D+ ++ FP+ T + +
Sbjct: 486 HPYVERFIKSY--LGDSATAHPHSPY----HQYLRILHNCDMMVNPFPFGNTNGIIDMVT 539
Query: 784 MGVPCVTMAGS-VHAHNVGVSLLTKVGL-KHLIAKNEDEYVQLALQLASDVTALANLRM- 840
+G+ V G+ VH H + L ++GL + LIA DEYV+ A++LA + LR
Sbjct: 540 LGLVGVCKTGAEVHEH-IDEGLFKRLGLPEWLIANTVDEYVERAVRLAENHQERLELRRY 598
Query: 841 -----SLRDLMSKSPVCDGQNF 857
L L + P GQ F
Sbjct: 599 IIENNGLNTLFTGDPRPMGQVF 620
>pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
pdb|2Q7F|B Chain B, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
Length = 243
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 86/199 (43%), Gaps = 6/199 (3%)
Query: 202 SELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 261
SE Y+ A + KA E A Y N + + +LE A+A Y++ L + + A
Sbjct: 34 SEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATA 93
Query: 262 ---KNNMAIA--LTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKAL 316
N+ + + + +AL NG F LVKLE + Y ++A+
Sbjct: 94 YYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLE-QPKLALPYLQRAV 152
Query: 317 YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKA 376
N + +A + G+ D A+ + +P A+A N GV Y ++N +KA
Sbjct: 153 ELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKA 212
Query: 377 VECYQMALSIKPNFSQSLN 395
+E A+ I+P+ +L+
Sbjct: 213 LEMLDKAIDIQPDHMLALH 231
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 75/169 (44%), Gaps = 13/169 (7%)
Query: 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL 111
+++AN+L S N+ ALA Y+ LE DS A+ G G ++ M + A D F +A++
Sbjct: 61 INFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA 120
Query: 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAEC---LAIVLTDLGTSLK 168
+N G L+ G ++ E AL P + A E G L
Sbjct: 121 GMEN-------GDLFYMLGTVLVKLEQPKLAL---PYLQRAVELNENDTEARFQFGMCLA 170
Query: 169 LAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 217
G + + ++ + DP +A A+YN GV Y+ + AL +KA
Sbjct: 171 NEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKA 219
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 72/162 (44%), Gaps = 9/162 (5%)
Query: 100 LAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV 159
LAF + +A++LD A A+ G +Y + EA + + KAL A L V
Sbjct: 77 LAF--YDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTV 134
Query: 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 219
L L KLA + A++++ + A + G+ + D AL +
Sbjct: 135 LVKL-EQPKLA------LPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTE 187
Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 261
+ P +A+A+ N GV Y + + E A+ ++ + + P+ +A
Sbjct: 188 QDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLA 229
Score = 37.0 bits (84), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 35/167 (20%), Positives = 64/167 (38%), Gaps = 3/167 (1%)
Query: 294 PFFELVKLEGDINQ---GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 350
P+ L +N+ +A+Y KAL + A A Y G Y + A +E A
Sbjct: 59 PYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKAL 118
Query: 351 HFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXX 410
+ LG + + A+ Q A+ + N +++ G+ +G
Sbjct: 119 RAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178
Query: 411 XXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 457
+P +A+A+ N GV Y + A++ ++ + I PD
Sbjct: 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD 225
Score = 32.7 bits (73), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 37/83 (44%)
Query: 67 ALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126
AL + +E + + EA G+CL + M A F+ + DP +A A + G+ Y
Sbjct: 144 ALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTY 203
Query: 127 KDEGRLVEAAESYHKALSADPSY 149
+ +A E KA+ P +
Sbjct: 204 AYKENREKALEMLDKAIDIQPDH 226
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 7/113 (6%)
Query: 167 LKLAGNTQDGIQK-------YYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 219
LK GN Q ++ Y +A++++P A + N YS+L Y A+ E+A
Sbjct: 15 LKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAIC 74
Query: 220 ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDL 272
P Y++AY MG+ + A+A Y++ L + P+ E K+N+ IA L
Sbjct: 75 IDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKL 127
Score = 34.7 bits (78), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 40/98 (40%)
Query: 371 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNN 430
+N + AV Y A+ + P + N Y+ G +P Y++AY
Sbjct: 26 ENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGR 85
Query: 431 LGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 468
+G+ A+ Y++ L++DPD+ N +A
Sbjct: 86 MGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIA 123
Score = 33.1 bits (74), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Query: 139 YHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLG 198
Y KA+ +P+ A+ + + GN +Q A+ IDP Y+ AY +G
Sbjct: 35 YGKAIELNPAN-------AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMG 87
Query: 199 VVYSELMQYDTALGCYEKA 217
+ S L ++ A+ Y+KA
Sbjct: 88 LALSSLNKHVEAVAYYKKA 106
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 52/114 (45%), Gaps = 9/114 (7%)
Query: 76 EKDSGNVEAHIGKG-ICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVE 134
E+DS E +G ++++N A + +A++L+P NA + Y G
Sbjct: 6 EEDSAEAERLKTEGNEQMKVENF-EAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAG 64
Query: 135 AAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP 188
A + +A+ DP+Y A + + L+ L + + + Y +AL++DP
Sbjct: 65 AVQDCERAICIDPAYSKAYGRMGLALSSLNKHV-------EAVAYYKKALELDP 111
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 7/120 (5%)
Query: 288 GSNFQSPFFELVKLEGD-------INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFD 340
GS S E +K EG+ V +Y KA+ N A N AY ++ +
Sbjct: 4 GSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYA 63
Query: 341 MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV 400
A+ E A +P ++A +G+ + +AV Y+ AL + P+ +NL +
Sbjct: 64 GAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIA 123
>pdb|2XPI|A Chain A, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
pdb|2XPI|D Chain D, Crystal Structure Of ApcC HETERO-Tetramer Cut9-Hcn1
Length = 597
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/244 (21%), Positives = 94/244 (38%), Gaps = 27/244 (11%)
Query: 41 STLKGFEGKD--ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMG 98
S++ G E L A+ L R++F+D LA+ +LE D N++ + L
Sbjct: 296 SSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEK 355
Query: 99 RLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAI 158
+ ++ V P+ A GI Y ++ EA + K+ + DP + PA
Sbjct: 356 NKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPA------ 409
Query: 159 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL---------MQYDT 209
S + G I Y A ++ Y LG+ + +L +Q
Sbjct: 410 -WIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSY 468
Query: 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 269
AL Y+ L +GV+ N+ D+++AI ++ L + + + A
Sbjct: 469 ALFQYDPLLLNE---------LGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATW 519
Query: 270 TDLG 273
+LG
Sbjct: 520 ANLG 523
Score = 36.2 bits (82), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 79/195 (40%), Gaps = 14/195 (7%)
Query: 84 AHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKAL 143
A IG ++ A +++ A +L + G+ + G ++ A E Y ++
Sbjct: 409 AWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANE-YLQSS 467
Query: 144 SADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI-------DPHYAPAYYN 196
A Y P ++L +LG + Q I + AL + + +A + N
Sbjct: 468 YALFQYDP------LLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWAN 521
Query: 197 LGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP 256
LG Y +L YD A+ + L A + + ++Y ++ AI LA+SP
Sbjct: 522 LGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581
Query: 257 NFEIAKNNMAIALTD 271
N +A + + AL +
Sbjct: 582 NEIMASDLLKRALEE 596
>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus
Fumigatus
Length = 164
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 6/116 (5%)
Query: 370 RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYN 429
R KA++ Y ALSI P L+N Y+ G +P Y++A++
Sbjct: 24 RKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWS 83
Query: 430 NLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHR 485
LG+ D A +AYE+ ++ + N G + AM E K+ EA+R
Sbjct: 84 RLGLARFDMADYKGAKEAYEKGIEAE---GNGGSD---AMKRGLETTKRKIEEANR 133
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 35/81 (43%)
Query: 177 IQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK 236
I Y +AL I P N YS Q++ A E A + P Y++A+ +G+
Sbjct: 31 IDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90
Query: 237 NRGDLESAIACYERCLAVSPN 257
+ D + A YE+ + N
Sbjct: 91 DMADYKGAKEAYEKGIEAEGN 111
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 37/90 (41%)
Query: 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI 186
K EG A + Y KA+ A I L++ + +G + + A +
Sbjct: 15 KSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVV 74
Query: 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEK 216
DP Y+ A+ LG+ ++ Y A YEK
Sbjct: 75 DPKYSKAWSRLGLARFDMADYKGAKEAYEK 104
>pdb|3FP2|A Chain A, Crystal Structure Of Tom71 Complexed With Hsp82 C-Terminal
Fragment
pdb|3FP3|A Chain A, Crystal Structure Of Tom71
pdb|3FP4|A Chain A, Crystal Structure Of Tom71 Complexed With Ssa1 C-Terminal
Fragment
Length = 537
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 66/159 (41%), Gaps = 10/159 (6%)
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAEC-LAIVLTDLGTSLKLAGNTQ 174
A A + GI + + L++A ++++ P+ P + LA+ L D N+Q
Sbjct: 243 ALALCYTGIFHFLKNNLLDAQVLLQESINLHPT--PNSYIFLALTLAD-------KENSQ 293
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
+ + + +A+ ++P Y P YY+ G +Y L Y A ++KA P Y + +
Sbjct: 294 EFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACL 353
Query: 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
+G + A + P A LTD G
Sbjct: 354 LYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRG 392
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%)
Query: 322 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 381
YA + N G + F+ AI +Y+ A +P+ +N+ Y +L+K +E
Sbjct: 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTT 83
Query: 382 MALSIKPNFSQSL 394
AL IKP+ S++L
Sbjct: 84 KALEIKPDHSKAL 96
>pdb|3LCA|A Chain A, Structure Of Tom71 Complexed With Hsp70 Ssa1 C Terminal
Tail Indicating Conformational Plasticity
Length = 533
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 66/159 (41%), Gaps = 10/159 (6%)
Query: 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAEC-LAIVLTDLGTSLKLAGNTQ 174
A A + GI + + L++A ++++ P+ P + LA+ L D N+Q
Sbjct: 239 ALALCYTGIFHFLKNNLLDAQVLLQESINLHPT--PNSYIFLALTLAD-------KENSQ 289
Query: 175 DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234
+ + + +A+ ++P Y P YY+ G +Y L Y A ++KA P Y + +
Sbjct: 290 EFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACL 349
Query: 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273
+G + A + P A LTD G
Sbjct: 350 LYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRG 388
Score = 37.7 bits (86), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%)
Query: 322 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 381
YA + N G + F+ AI +Y+ A +P+ +N+ Y +L+K +E
Sbjct: 20 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTT 79
Query: 382 MALSIKPNFSQSL 394
AL IKP+ S++L
Sbjct: 80 KALEIKPDHSKAL 92
>pdb|3ASG|A Chain A, Mama D159k Mutant 2
pdb|3ASG|B Chain B, Mama D159k Mutant 2
pdb|3ASH|A Chain A, Mama D159k Mutant 1
pdb|3ASH|B Chain B, Mama D159k Mutant 1
Length = 186
Score = 39.3 bits (90), Expect = 0.010, Method: Composition-based stats.
Identities = 35/150 (23%), Positives = 57/150 (38%)
Query: 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEA 183
+ Y+D+G A Y +A+ A V LG + G G + +
Sbjct: 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERS 68
Query: 184 LKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLES 243
L P LG+ Y ++ +YD A+ K A P+ +GV KN G +
Sbjct: 69 LADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALKNLGRFDE 128
Query: 244 AIACYERCLAVSPNFEIAKNNMAIALTDLG 273
AI ++ L + PN +A + +G
Sbjct: 129 AIDSFKIALGLRPNEGKVHRAIAFSYEQMG 158
Score = 39.3 bits (90), Expect = 0.011, Method: Composition-based stats.
Identities = 32/153 (20%), Positives = 65/153 (42%), Gaps = 5/153 (3%)
Query: 330 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 389
G+++ + ++ A++ E + + + +LG+ Y +D+ E + +L+ P+
Sbjct: 15 GISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD 74
Query: 390 FSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYE 449
+ LG+ Y NP LGV ++ G AID+++
Sbjct: 75 NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALKNLGRFDEAIDSFK 134
Query: 450 QCLKIDPDSRNAGQ-NRLLAMNYINEG-HDDKL 480
L + P N G+ +R +A +Y G H++ L
Sbjct: 135 IALGLRP---NEGKVHRAIAFSYEQMGRHEEAL 164
Score = 37.0 bits (84), Expect = 0.056, Method: Composition-based stats.
Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 12/93 (12%)
Query: 303 GDINQGVAYYKKALYYNWHYADAMYN------LGVAYGEMLKFDMAIVFYELAFHFNPHC 356
G +++G +++L ADA N LG+ Y ++ K+D+A+ NP
Sbjct: 56 GAVDRGTELLERSL------ADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN 109
Query: 357 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 389
LGV K+ D+A++ +++AL ++PN
Sbjct: 110 FNVRFRLGVALKNLGRFDEAIDSFKIALGLRPN 142
>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
pdb|1ELW|B Chain B, Crystal Structure Of The Tpr1 Domain Of Hop In Complex
With A Hsc70 Peptide
Length = 118
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 39/100 (39%), Gaps = 4/100 (4%)
Query: 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTAL--GCYEKA 217
L + G GN D +Q Y EA+K+DPH Y N Y++ Y A GC K
Sbjct: 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGC--KT 64
Query: 218 ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257
+P + + Y + E A YE L N
Sbjct: 65 VDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEAN 104
>pdb|3AS8|A Chain A, Mama Msr-1 P41212
pdb|3ASF|A Chain A, Mama Msr-1 C2
pdb|3ASF|B Chain B, Mama Msr-1 C2
Length = 186
Score = 38.1 bits (87), Expect = 0.026, Method: Composition-based stats.
Identities = 33/153 (21%), Positives = 64/153 (41%), Gaps = 5/153 (3%)
Query: 330 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 389
G+++ + ++ A+V E + + E +LG+ Y +D+ E + +++ P+
Sbjct: 15 GISHAKAGRYSEAVVMLEQVYDADAFDVEVALHLGIAYVKTGAVDRGTELLERSIADAPD 74
Query: 390 FSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYE 449
+ LG+ Y NP LGV + G AID+++
Sbjct: 75 NIKVATVLGLTYVQVQKYDLAVPLLVKVAEANPVNFNVRFRLGVALDNLGRFDEAIDSFK 134
Query: 450 QCLKIDPDSRNAGQ-NRLLAMNYINEG-HDDKL 480
L + P N G+ +R +A +Y G H++ L
Sbjct: 135 IALGLRP---NEGKVHRAIAYSYEQMGSHEEAL 164
Score = 35.8 bits (81), Expect = 0.12, Method: Composition-based stats.
Identities = 33/151 (21%), Positives = 57/151 (37%)
Query: 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEA 183
+ Y+D+G A Y +A+ A V LG + G G + +
Sbjct: 9 VYYRDKGISHAKAGRYSEAVVMLEQVYDADAFDVEVALHLGIAYVKTGAVDRGTELLERS 68
Query: 184 LKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLES 243
+ P LG+ Y ++ +YD A+ K A P+ +GV N G +
Sbjct: 69 IADAPDNIKVATVLGLTYVQVQKYDLAVPLLVKVAEANPVNFNVRFRLGVALDNLGRFDE 128
Query: 244 AIACYERCLAVSPNFEIAKNNMAIALTDLGT 274
AI ++ L + PN +A + +G+
Sbjct: 129 AIDSFKIALGLRPNEGKVHRAIAYSYEQMGS 159
Score = 34.3 bits (77), Expect = 0.30, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 32/61 (52%)
Query: 329 LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 388
LG+ Y ++ K+D+A+ NP LGV + D+A++ +++AL ++P
Sbjct: 82 LGLTYVQVQKYDLAVPLLVKVAEANPVNFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP 141
Query: 389 N 389
N
Sbjct: 142 N 142
>pdb|1XNF|A Chain A, Crystal Structure Of E.Coli Tpr-Protein Nlpi
pdb|1XNF|B Chain B, Crystal Structure Of E.Coli Tpr-Protein Nlpi
Length = 275
Score = 37.7 bits (86), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 84/210 (40%), Gaps = 16/210 (7%)
Query: 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIA 246
D A Y GV+Y L A + +A RP E + +G+ G+ ++A
Sbjct: 39 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDXPEVFNYLGIYLTQAGNFDAAYE 98
Query: 247 CYERCLAVSPNFEIAKNNMAIALTDLGTKTYGR-ALLLFRLNGSN--FQSPFFELVKLEG 303
++ L + P + A N IAL G + LL F + N F+S + L + +
Sbjct: 99 AFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKL 158
Query: 304 DINQG----VAYYKKALYYNWHYADAMYNLG----VAYGEMLKFDMAIVFYELAFHFNPH 355
D Q +++K+ W + + LG E LK D A LA H
Sbjct: 159 DEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLXERLKAD-ATDNTSLA----EH 213
Query: 356 CAEACNNLGVIYKDRDNLDKAVECYQMALS 385
+E LG Y +LD A +++A++
Sbjct: 214 LSETNFYLGKYYLSLGDLDSATALFKLAVA 243
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 3/90 (3%)
Query: 391 SQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 450
+Q L GV+Y G P E +N LG+ AG+ A +A++
Sbjct: 43 AQLLYERGVLYDSLGLRALARNDFSQALAIRPDXPEVFNYLGIYLTQAGNFDAAYEAFDS 102
Query: 451 CLKIDPDSRNAGQNRLLAMNYINEGHDDKL 480
L++DP A NR +A+ Y G DKL
Sbjct: 103 VLELDPTYNYAHLNRGIALYY---GGRDKL 129
Score = 33.5 bits (75), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 42/101 (41%), Gaps = 4/101 (3%)
Query: 88 KGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADP 147
+G+ + LA + FS+A+ + P + GI G A E++ L DP
Sbjct: 49 RGVLYDSLGLRALARNDFSQALAIRPDXPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP 108
Query: 148 SYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP 188
+Y A I L G KLA QD + +Y+ DP
Sbjct: 109 TYNYAHLNRGIALY-YGGRDKLA---QDDLLAFYQDDPNDP 145
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 50/138 (36%), Gaps = 6/138 (4%)
Query: 364 GVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPT 423
GV+Y A + AL+I+P+ + N LG+ T G +PT
Sbjct: 50 GVLYDSLGLRALARNDFSQALAIRPDXPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT 109
Query: 424 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEA 483
Y A+ N G+ G LA D + DP+ LA ++E ++ +
Sbjct: 110 YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQ 169
Query: 484 H------RDWGKRFMRLY 495
H WG + Y
Sbjct: 170 HFEKSDKEQWGWNIVEFY 187
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 31/78 (39%)
Query: 323 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 382
A +Y GV Y + +A + A P E N LG+ N D A E +
Sbjct: 43 AQLLYERGVLYDSLGLRALARNDFSQALAIRPDXPEVFNYLGIYLTQAGNFDAAYEAFDS 102
Query: 383 ALSIKPNFSQSLNNLGVV 400
L + P ++ + N G+
Sbjct: 103 VLELDPTYNYAHLNRGIA 120
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 35/89 (39%), Gaps = 7/89 (7%)
Query: 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG 171
D + A G+LY G A + +AL+ P L I LT AG
Sbjct: 39 DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDXPEVFNYLGIYLTQ-------AG 91
Query: 172 NTQDGIQKYYEALKIDPHYAPAYYNLGVV 200
N + + L++DP Y A+ N G+
Sbjct: 92 NFDAAYEAFDSVLELDPTYNYAHLNRGIA 120
>pdb|3ASD|A Chain A, Mama R50e Mutant
Length = 200
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 64/153 (41%), Gaps = 5/153 (3%)
Query: 330 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 389
G+++ + ++ A++ E + + + +LG+ Y +D+ E + +L+ P+
Sbjct: 15 GISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD 74
Query: 390 FSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYE 449
+ LG+ Y NP LGV + G AID+++
Sbjct: 75 NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFK 134
Query: 450 QCLKIDPDSRNAGQ-NRLLAMNYINEG-HDDKL 480
L + P N G+ +R +A +Y G H++ L
Sbjct: 135 IALGLRP---NEGKVHRAIAFSYEQMGRHEEAL 164
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 51/134 (38%)
Query: 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEA 183
+ Y+D+G A Y +A+ A V LG + G G + +
Sbjct: 9 VYYEDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERS 68
Query: 184 LKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLES 243
L P LG+ Y ++ +YD A+ K A P+ +GV N G +
Sbjct: 69 LADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDE 128
Query: 244 AIACYERCLAVSPN 257
AI ++ L + PN
Sbjct: 129 AIDSFKIALGLRPN 142
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 32/61 (52%)
Query: 329 LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 388
LG+ Y ++ K+D+A+ NP LGV + D+A++ +++AL ++P
Sbjct: 82 LGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP 141
Query: 389 N 389
N
Sbjct: 142 N 142
>pdb|3AS4|A Chain A, Mama Amb-1 C2221
pdb|3AS5|A Chain A, Mama Amb-1 P212121
pdb|3AS5|B Chain B, Mama Amb-1 P212121
Length = 186
Score = 37.7 bits (86), Expect = 0.033, Method: Composition-based stats.
Identities = 32/153 (20%), Positives = 64/153 (41%), Gaps = 5/153 (3%)
Query: 330 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 389
G+++ + ++ A++ E + + + +LG+ Y +D+ E + +L+ P+
Sbjct: 15 GISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD 74
Query: 390 FSQSLNNLGVVYTVQGXXXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYE 449
+ LG+ Y NP LGV + G AID+++
Sbjct: 75 NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFK 134
Query: 450 QCLKIDPDSRNAGQ-NRLLAMNYINEG-HDDKL 480
L + P N G+ +R +A +Y G H++ L
Sbjct: 135 IALGLRP---NEGKVHRAIAFSYEQMGRHEEAL 164
Score = 37.4 bits (85), Expect = 0.044, Method: Composition-based stats.
Identities = 34/150 (22%), Positives = 56/150 (37%)
Query: 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEA 183
+ Y+D+G A Y +A+ A V LG + G G + +
Sbjct: 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERS 68
Query: 184 LKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLES 243
L P LG+ Y ++ +YD A+ K A P+ +GV N G +
Sbjct: 69 LADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDE 128
Query: 244 AIACYERCLAVSPNFEIAKNNMAIALTDLG 273
AI ++ L + PN +A + +G
Sbjct: 129 AIDSFKIALGLRPNEGKVHRAIAFSYEQMG 158
Score = 34.7 bits (78), Expect = 0.25, Method: Composition-based stats.
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 12/93 (12%)
Query: 303 GDINQGVAYYKKALYYNWHYADAMYN------LGVAYGEMLKFDMAIVFYELAFHFNPHC 356
G +++G +++L ADA N LG+ Y ++ K+D+A+ NP
Sbjct: 56 GAVDRGTELLERSL------ADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN 109
Query: 357 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 389
LGV + D+A++ +++AL ++PN
Sbjct: 110 FNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN 142
>pdb|2HO1|A Chain A, Functional Characterization Of Pseudomonas Aeruginosa Pilf
pdb|2HO1|B Chain B, Functional Characterization Of Pseudomonas Aeruginosa Pilf
Length = 252
Score = 37.4 bits (85), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 75/170 (44%), Gaps = 13/170 (7%)
Query: 75 LEKDSGNVEA---HIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGR 131
L+ D G EA +I G+ + A +A+++DP +A AH ++++ E
Sbjct: 27 LKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEXE 86
Query: 132 LVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK--IDPH 189
A E Y KAL++D A VL + G L ++ Q+ EA + + P
Sbjct: 87 PKLADEEYRKALASDSRN-------ARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPE 139
Query: 190 YAPAYYNLGVVYSELMQYDTALGCYEKA-ALERPMYAEAYCNMGVIYKNR 238
+ + NLG+V + + A +EK+ L R + A ++YK R
Sbjct: 140 RSRVFENLGLVSLQXKKPAQAKEYFEKSLRLNRNQPSVALEXADLLYKER 189
>pdb|2PL2|A Chain A, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
pdb|2PL2|B Chain B, Crystal Structure Of Ttc0263: A Thermophilic Tpr Protein
In Thermus Thermophilus Hb27
Length = 217
Score = 37.4 bits (85), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 13/93 (13%)
Query: 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA-ALE-----RPMY 224
G + + +A +++P YAP + G+VY+ L + D A ++A ALE R
Sbjct: 98 GYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157
Query: 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257
AE Y +M G L+ A+A Y + L +P
Sbjct: 158 AELYLSM-------GRLDEALAQYAKALEQAPK 183
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 37.4 bits (85), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 44/97 (45%)
Query: 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYE 215
LA+++ + G G+ ++ Y EA+K +P A Y N Y++L+++ AL E
Sbjct: 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCE 74
Query: 216 KAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 252
+ P + + Y + D A+ Y++ L
Sbjct: 75 ECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKAL 111
>pdb|2FI7|A Chain A, Crystal Structure Of Pilf : Functional Implication In The
Type 4 Pilus Biogenesis In Pseudomonas Aeruginosa
pdb|2FI7|B Chain B, Crystal Structure Of Pilf : Functional Implication In The
Type 4 Pilus Biogenesis In Pseudomonas Aeruginosa
Length = 265
Score = 37.4 bits (85), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 76/170 (44%), Gaps = 13/170 (7%)
Query: 75 LEKDSGNVEA---HIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGR 131
L+ D G EA +I G+ + A +A+++DP +A AH ++++ E
Sbjct: 40 LKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEME 99
Query: 132 LVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK--IDPH 189
A E Y KAL++D A VL + G L ++ Q+ EA + + P
Sbjct: 100 PKLADEEYRKALASDSRN-------ARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPE 152
Query: 190 YAPAYYNLGVVYSELMQYDTALGCYEKA-ALERPMYAEAYCNMGVIYKNR 238
+ + NLG+V ++ + A +EK+ L R + A ++YK R
Sbjct: 153 RSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKER 202
>pdb|3SF4|A Chain A, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
pdb|3SF4|B Chain B, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
pdb|3SF4|C Chain C, Crystal Structure Of The Complex Between The Conserved
Cell Polarity Proteins Inscuteable And Lgn
Length = 406
Score = 36.6 bits (83), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 71/284 (25%), Positives = 113/284 (39%), Gaps = 44/284 (15%)
Query: 153 AECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH----YAPAYYNLGVVYSELMQYD 208
A CL + L G L +G+ + G+ + A+++ + Y LG Y L Y
Sbjct: 7 ASCLELALE--GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYA 64
Query: 209 TALGCYEK-AALERPM-----YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262
AL + L R + A+A N+G K G+ + AI C +R L +S K
Sbjct: 65 KALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN-DK 123
Query: 263 NNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELV-----KLEGDINQGVAYYKKALY 317
A AL +LG ++ G +F P + V ++ + V +Y++ L
Sbjct: 124 VGEARALYNLGN--------VYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLS 175
Query: 318 YNWHYAD------AMYNLGVAYGEMLKFDMAIVFYE----LAFHFNPHCAE--ACNNLGV 365
D A NLG + + F A++ +E +A F AE A +NLG
Sbjct: 176 LVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGN 235
Query: 366 IYKDRDNLDKAVECYQMALSIKPNF------SQSLNNLGVVYTV 403
Y + A E Y+ L + +QS +LG YT+
Sbjct: 236 AYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL 279
Score = 33.5 bits (75), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 12/109 (11%)
Query: 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAP------AYYNLGVVYSELMQYDTALGCYE 215
+LG + L GN +D + + + L I + AY NLG Y L +++TA Y+
Sbjct: 192 NLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 251
Query: 216 KAAL------ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 258
K L +R + A++ ++G Y D E AI + + LA++
Sbjct: 252 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 300
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 16/119 (13%)
Query: 303 GDINQGVAYYKKALYY---NWHYADAMYN-LGVAYGEMLKFDMAIVFYE----LAFHFNP 354
GD GV++++ A+ + A+Y+ LG AY + + A+ ++ LA
Sbjct: 23 GDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD 82
Query: 355 HCAEA--CNNLGVIYKDRDNLDKAVECYQMALSI------KPNFSQSLNNLGVVYTVQG 405
EA NLG K N D+A+ C Q L I K +++L NLG VY +G
Sbjct: 83 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG 141
>pdb|3EDT|B Chain B, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|D Chain D, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|F Chain F, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
pdb|3EDT|H Chain H, Crystal Structure Of The Mutated S328n Hklc2 Tpr Domain
Length = 283
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 44/99 (44%), Gaps = 16/99 (16%)
Query: 323 ADAMYNLGVAYGEMLKFDMAIVFYELAFH--------FNPHCAEACNNLGVIYKDRDNLD 374
A + NL V YG+ K+ A + A F+P A+ NNL ++ +++ +
Sbjct: 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAE 144
Query: 375 KAVECYQMALSI--------KPNFSQSLNNLGVVYTVQG 405
+ Y+ AL I PN +++ NNL Y QG
Sbjct: 145 EVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQG 183
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 43/116 (37%), Gaps = 16/116 (13%)
Query: 353 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK--------PNFSQSLNNLGVVYTVQ 404
+P A NNL V+Y R +A + AL I+ P+ ++ LNNL ++ Q
Sbjct: 81 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQ 140
Query: 405 GXXXXXXXXXXXXXX--------XNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 452
G +P A+ NNL Y G A Y++ L
Sbjct: 141 GKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL 196
>pdb|3RO3|A Chain A, Crystal Structure Of LgnMINSCUTEABLE COMPLEX
Length = 164
Score = 35.8 bits (81), Expect = 0.13, Method: Composition-based stats.
Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 12/106 (11%)
Query: 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAP------AYYNLGVVYSELMQYDTALGCYE 215
+LG + L GN +D + + + L I + AY NLG Y L +++TA Y+
Sbjct: 14 NLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYK 73
Query: 216 KAAL------ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS 255
K L +R + A++ ++G Y D E AI + + LA++
Sbjct: 74 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 119
>pdb|4A1S|A Chain A, Crystallographic Structure Of The Pins:insc Complex
pdb|4A1S|B Chain B, Crystallographic Structure Of The Pins:insc Complex
Length = 411
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 68/278 (24%), Positives = 110/278 (39%), Gaps = 39/278 (14%)
Query: 155 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALK-----------IDPHYAPAYYNLGVVYSE 203
CL + L G L AG+ + G+ + A++ I AY+ LG Y++
Sbjct: 48 CLELALE--GERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGD-YNK 104
Query: 204 LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKN 263
MQY K+ +R A++ N+G K G + A C ER L ++ +
Sbjct: 105 AMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLG-DRL 163
Query: 264 NMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYA 323
+ AL +LG + + L + N F E + + V +Y++ L
Sbjct: 164 SEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA------LTRAVEFYQENLKLMRDLG 217
Query: 324 D------AMYNLGVAYGEMLKFDMAIVFYE----LAFHFNPHCAE--ACNNLGVIYKDRD 371
D A NLG Y + F AI ++ +A F AE A +NLG +
Sbjct: 218 DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLG 277
Query: 372 NLDKAVECYQMALSIKPNF------SQSLNNLGVVYTV 403
+ A E Y+ L++ +QS +LG YT+
Sbjct: 278 QFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTL 315
>pdb|4GA1|A Chain A, Structure Of The N-Terminal Domain Of Nup358
Length = 150
Score = 35.0 bits (79), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%)
Query: 333 YGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 388
Y E ++D+A + + +A LG++Y+ +N DKAVECY+ ++ + P
Sbjct: 41 YXEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNP 96
>pdb|4GA2|A Chain A, Structure Of The N-Terminal Domain Of Nup358
Length = 150
Score = 34.3 bits (77), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 333 YGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 389
Y E ++D+A + + +A LG++Y+ +N DKAVECY+ ++ + P
Sbjct: 41 YYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPT 97
>pdb|4GA0|A Chain A, Structure Of The N-Terminal Domain Of Nup358
Length = 150
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 333 YGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 389
Y E ++D+A + + +A LG++Y+ +N DKAVECY+ ++ + P
Sbjct: 41 YYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPT 97
>pdb|3CEQ|A Chain A, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
pdb|3CEQ|B Chain B, The Tpr Domain Of Human Kinesin Light Chain 2 (Hklc2)
Length = 283
Score = 33.9 bits (76), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 16/99 (16%)
Query: 323 ADAMYNLGVAYGEMLKFDMAIVFYELAFH--------FNPHCAEACNNLGVIYKDRDNLD 374
A + NL V YG+ K+ A + A F+P A+ +NL ++ +++ +
Sbjct: 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQNQGKAE 144
Query: 375 KAVECYQMALSI--------KPNFSQSLNNLGVVYTVQG 405
+ Y+ AL I PN +++ NNL Y QG
Sbjct: 145 EVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQG 183
Score = 29.3 bits (64), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 43/116 (37%), Gaps = 16/116 (13%)
Query: 353 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK--------PNFSQSLNNLGVVYTVQ 404
+P A NNL V+Y R +A + AL I+ P+ ++ L+NL ++ Q
Sbjct: 81 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLSNLALLCQNQ 140
Query: 405 GXXXXXXXXXXXXXX--------XNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 452
G +P A+ NNL Y G A Y++ L
Sbjct: 141 GKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL 196
>pdb|4ABN|A Chain A, Crystal Structure Of Full Length Mouse Strap (Ttc5)
pdb|4ABN|B Chain B, Crystal Structure Of Full Length Mouse Strap (Ttc5)
Length = 474
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 17/95 (17%)
Query: 182 EALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDL 241
+AL + P Y+P L KA P EA+ +G +Y +GD+
Sbjct: 110 KALNVTPDYSPEAEVL----------------LSKAVKLEPELVEAWNQLGEVYWKKGDV 153
Query: 242 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKT 276
SA C+ L N +++ N+++ L L T +
Sbjct: 154 TSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTDS 187
>pdb|4G2V|A Chain A, Structure Complex Of Lgn Binding With Frmpd1
Length = 340
Score = 33.9 bits (76), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 113/287 (39%), Gaps = 48/287 (16%)
Query: 152 AAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH----YAPAYYNLGVVYSELMQY 207
+A CL + L G L +G+ + G+ + A+++ + Y LG Y L Y
Sbjct: 4 SASCLELALE--GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDY 61
Query: 208 DTALGCYEK-AALERPM-----YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 261
AL + L R + A+A N+G K G+ + AI C +R L +S
Sbjct: 62 AKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN-D 120
Query: 262 KNNMAIALTDLGTKTYGRALLLFRLNGSNFQSP-------FFELVKLEGDINQGVAYYKK 314
K A AL +LG ++ G +F P F E V+ + V Y++
Sbjct: 121 KVGEARALYNLGN--------VYHAKGKSFGCPGPQDTGEFPEDVR--NALQAAVDLYEE 170
Query: 315 ALYYNWHYAD------AMYNLGVAYGEMLKFDMAIVFYE----LAFHFNPHCAE--ACNN 362
L D A NLG + + F A++ +E +A F AE A +N
Sbjct: 171 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSN 230
Query: 363 LGVIYKDRDNLDKAVECYQMALSIKPNF------SQSLNNLGVVYTV 403
LG Y + A E Y+ L + +QS +LG YT+
Sbjct: 231 LGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL 277
Score = 33.1 bits (74), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 12/110 (10%)
Query: 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAP------AYYNLGVVYSELMQYDTALGCYE 215
+LG + L GN +D + + + L I + AY NLG Y L +++TA Y+
Sbjct: 190 NLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 249
Query: 216 KAAL------ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 259
K L +R + A++ ++G Y D E AI + + LA++ +
Sbjct: 250 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 299
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 16/119 (13%)
Query: 303 GDINQGVAYYKKALYY---NWHYADAMYN-LGVAYGEMLKFDMAIVFYE----LAFHFNP 354
GD GV++++ A+ + A+Y+ LG AY + + A+ ++ LA
Sbjct: 21 GDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD 80
Query: 355 HCAEA--CNNLGVIYKDRDNLDKAVECYQMALSI------KPNFSQSLNNLGVVYTVQG 405
EA NLG K N D+A+ C Q L I K +++L NLG VY +G
Sbjct: 81 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG 139
>pdb|3RO2|A Chain A, Structures Of The LgnNUMA COMPLEX
Length = 338
Score = 33.5 bits (75), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 113/287 (39%), Gaps = 48/287 (16%)
Query: 152 AAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH----YAPAYYNLGVVYSELMQY 207
+A CL + L G L +G+ + G+ + A+++ + Y LG Y L Y
Sbjct: 2 SASCLELALE--GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDY 59
Query: 208 DTALGCYEK-AALERPM-----YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 261
AL + L R + A+A N+G K G+ + AI C +R L +S
Sbjct: 60 AKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN-D 118
Query: 262 KNNMAIALTDLGTKTYGRALLLFRLNGSNFQSP-------FFELVKLEGDINQGVAYYKK 314
K A AL +LG ++ G +F P F E V+ + V Y++
Sbjct: 119 KVGEARALYNLGN--------VYHAKGKSFGCPGPQDTGEFPEDVR--NALQAAVDLYEE 168
Query: 315 ALYYNWHYAD------AMYNLGVAYGEMLKFDMAIVFYE----LAFHFNPHCAE--ACNN 362
L D A NLG + + F A++ +E +A F AE A +N
Sbjct: 169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSN 228
Query: 363 LGVIYKDRDNLDKAVECYQMALSIKPNF------SQSLNNLGVVYTV 403
LG Y + A E Y+ L + +QS +LG YT+
Sbjct: 229 LGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL 275
Score = 33.1 bits (74), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 52/110 (47%), Gaps = 12/110 (10%)
Query: 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAP------AYYNLGVVYSELMQYDTALGCYE 215
+LG + L GN +D + + + L I + AY NLG Y L +++TA Y+
Sbjct: 188 NLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK 247
Query: 216 KAAL------ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 259
K L +R + A++ ++G Y D E AI + + LA++ +
Sbjct: 248 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 297
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 16/119 (13%)
Query: 303 GDINQGVAYYKKALYY---NWHYADAMYN-LGVAYGEMLKFDMAIVFYE----LAFHFNP 354
GD GV++++ A+ + A+Y+ LG AY + + A+ ++ LA
Sbjct: 19 GDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD 78
Query: 355 HCAEA--CNNLGVIYKDRDNLDKAVECYQMALSI------KPNFSQSLNNLGVVYTVQG 405
EA NLG K N D+A+ C Q L I K +++L NLG VY +G
Sbjct: 79 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG 137
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 42/96 (43%)
Query: 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER 221
+LG L AG D + +++ A+ DP AYY V+ + + AL K +
Sbjct: 31 ELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK 90
Query: 222 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257
+ A G + +G L+ A +++ L +P+
Sbjct: 91 MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS 126
Score = 30.8 bits (68), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/93 (21%), Positives = 38/93 (40%)
Query: 63 KFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC 122
+ DAL+ + ++ D N A+ + + A ++ ++L A
Sbjct: 41 QLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQR 100
Query: 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAEC 155
G L +G+L EA + + K L ++PS E
Sbjct: 101 GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEA 133
>pdb|3NF1|A Chain A, Crystal Structure Of The Tpr Domain Of Kinesin Light Chain
1
Length = 311
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 43/116 (37%), Gaps = 16/116 (13%)
Query: 353 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK--------PNFSQSLNNLGVVYTVQ 404
+P A NNL V+Y R +A + AL I+ P+ ++ LNNL ++ Q
Sbjct: 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQ 166
Query: 405 GX--------XXXXXXXXXXXXXXNPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 452
G +P A+ NNL Y G A Y++ L
Sbjct: 167 GKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL 222
>pdb|3ZGQ|A Chain A, Crystal Structure Of Human Interferon-induced Protein
Ifit5
pdb|4HOR|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
5`-triphosphate Oligocytidine
pdb|4HOS|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
5`-triphosphate Oligouridine
pdb|4HOT|A Chain A, Crystal Structure Of Full-length Human Ifit5 With
5`-triphosphate Oligoadenine
pdb|4J0U|A Chain A, Crystal Structure Of Ifit5/isg58
Length = 482
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 91/229 (39%), Gaps = 33/229 (14%)
Query: 93 QMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPA 152
+ +N A + +A+++ P ++ H G+ Y+ ++++ ++ H +P
Sbjct: 260 RRKNSWNKALELLKKALEVTPTSSFLHHQMGLCYR--AQMIQIKKATHN--------RPK 309
Query: 153 AECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALG 212
+ LK+ I + A++ D +A AY +L +Y+E QY A
Sbjct: 310 GK----------DKLKVDELISSAIFHFKAAMERDSMFAFAYTDLANMYAEGGQYSNAED 359
Query: 213 CYEKAALERPMYAEAYCNMGVIYK-----NRGDLESAIACYERCLAVSPNFEIAKNNMAI 267
+ KA + + + Y +R +AI Y L V + + +
Sbjct: 360 IFRKALRLENITDDHKHQIHYHYGRFQEFHRKSENTAIHHYLEALKVKDRSPL-RTKLTS 418
Query: 268 ALTDLGTKTY-GRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKA 315
AL L TK AL + L+ F + KLEG+ Q YY+KA
Sbjct: 419 ALKKLSTKRLCHNALDVQSLSALGF------VYKLEGEKRQAAEYYEKA 461
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 48/223 (21%), Positives = 80/223 (35%), Gaps = 33/223 (14%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNM-------------GRLA 101
A R +N + AL L + LE + H G+C + Q + +L
Sbjct: 256 AKFYRRKNSWNKALELLKKALEVTPTSSFLHHQMGLCYRAQMIQIKKATHNRPKGKDKLK 315
Query: 102 FDS--------FSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAA 153
D F A++ D A A+T +Y + G+ A + + KAL +
Sbjct: 316 VDELISSAIFHFKAAMERDSMFAFAYTDLANMYAEGGQYSNAEDIFRKALRLENITDDHK 375
Query: 154 ECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGC 213
+ + + NT I Y EALK+ +P L S L + T C
Sbjct: 376 HQIHYHYGRFQEFHRKSENT--AIHHYLEALKVKDR-SPLRTKLT---SALKKLSTKRLC 429
Query: 214 YEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP 256
+ + ++ +G +YK G+ A YE+ + P
Sbjct: 430 H------NALDVQSLSALGFVYKLEGEKRQAAEYYEKAQKIDP 466
>pdb|1WAO|1 Chain 1, Pp5 Structure
pdb|1WAO|2 Chain 2, Pp5 Structure
pdb|1WAO|3 Chain 3, Pp5 Structure
pdb|1WAO|4 Chain 4, Pp5 Structure
Length = 477
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 47/112 (41%)
Query: 170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC 229
A + ++ I+ Y +A++++P A Y N + Y Y ALG +A Y + Y
Sbjct: 19 AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYY 78
Query: 230 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRAL 281
G +A+ YE + V P+ + AK + K + RA+
Sbjct: 79 RRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAI 130
>pdb|4GCN|A Chain A, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
pdb|4GCN|B Chain B, N-Terminal Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 127
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 27/113 (23%), Positives = 48/113 (42%), Gaps = 7/113 (6%)
Query: 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216
AI DLG + + + Y +A+++DP Y N VY E ++ + EK
Sbjct: 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEK 67
Query: 217 AA-------LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262
A + + A+A G ++ + DL A+ + R L+ + E+ K
Sbjct: 68 AVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVK 120
>pdb|3MA5|A Chain A, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c.
pdb|3MA5|B Chain B, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c.
pdb|3MA5|C Chain C, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c.
pdb|3MA5|D Chain D, Crystal Structure Of The Tetratricopeptide Repeat Domain
Protein Q2s6c5_salrd From Salinibacter Ruber. Northeast
Structural Genomics Consortium Target Srr115c
Length = 100
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 172 NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 217
N + + E ++ DP Y YY+LG +Y L + D A+ Y +
Sbjct: 22 NASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67
>pdb|2KCL|A Chain A, Solution Nmr Structure Of Tetratricopeptide Repeat Domain
Protein Sru_0103 From Salinibacter Ruber, Northeast
Structural Genomics Consortium (Nesg) Target Srr115c
pdb|2KCV|A Chain A, Solution Nmr Structure Of Tetratricopeptide Repeat Domain
Protein Sru_0103 From Salinibacter Ruber, Northeast
Structural Genomics Consortium (Nesg) Target Srr115c
Length = 99
Score = 32.0 bits (71), Expect = 1.6, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 172 NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 217
N + + E ++ DP Y YY+LG +Y L + D A+ Y +
Sbjct: 21 NASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQG 66
>pdb|4I17|A Chain A, Crystal Structure Of A Hypothetical Protein (Bf2334) From
Bacteroides Fragilis Nctc 9343 At 1.50 A Resolution
Length = 228
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
Query: 63 KFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC 122
K+ +A ++I ++K+ A+IGK + + + +E +K P NA
Sbjct: 57 KYKEAADYFDIAIKKNYNLANAYIGKSAAYRDXKNNQEYIATLTEGIKAVPGNATIEKLY 116
Query: 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157
I Y EG+ + A + K A+ +YK A + +
Sbjct: 117 AIYYLKEGQKFQQAGNIEK---AEENYKHATDVTS 148
Score = 29.6 bits (65), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 62/157 (39%), Gaps = 8/157 (5%)
Query: 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFS 106
EG DAL+ N + K+ + L L + +V A+ G+C + A D F
Sbjct: 13 EGNDALNAKNYAVAFEKYSEYLKL-----TNNQDSVTAY-NCGVCADNIKKYKEAADYFD 66
Query: 107 EAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTS 166
A+K + A A+ Y+D E + + + A P + AI G
Sbjct: 67 IAIKKNYNLANAYIGKSAAYRDXKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQK 126
Query: 167 LKLAGNTQDGIQKYYEALKIDPH--YAPAYYNLGVVY 201
+ AGN + + Y A + A Y+LGV++
Sbjct: 127 FQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF 163
>pdb|2KAT|A Chain A, Solution Structure Of Protein Bpp2914 From Bordetella
Parapertussis. Northeast Structural Genomics Consortium
Target Bpr206
Length = 115
Score = 32.0 bits (71), Expect = 1.8, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 195 YNLGVVYSELMQYDTALGCYEKAALE-RPMYAEAYCNMGVIYKNRGDLESAIACYERCLA 253
+ LG Y+E Q+D AL + +AAL+ P Y+ A+ +G + +GD A +E LA
Sbjct: 23 FTLGKTYAEHEQFDAALP-HLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81
Query: 254 VS 255
+
Sbjct: 82 AA 83
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 31.6 bits (70), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 41/96 (42%)
Query: 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER 221
+LG L AG D + +++ A+ DP AYY V+ + AL K +
Sbjct: 31 ELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTKVIQLK 90
Query: 222 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257
+ A G + +G L+ A +++ L +P+
Sbjct: 91 XDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS 126
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/93 (21%), Positives = 38/93 (40%)
Query: 63 KFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC 122
+ DAL+ + ++ D N A+ + + A ++ ++L A
Sbjct: 41 QLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTKVIQLKXDFTAARLQR 100
Query: 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAEC 155
G L +G+L EA + + K L ++PS E
Sbjct: 101 GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEA 133
>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form
pdb|1IIP|A Chain A, Bovine Cyclophilin 40, Tetragonal Form
Length = 370
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 155 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 214
L+ VL LK++ + Q + EAL+IDP A Y + L +YD AL
Sbjct: 272 ALSCVLNIGACKLKMS-DWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADL 330
Query: 215 EKA 217
+KA
Sbjct: 331 KKA 333
>pdb|1I4V|A Chain A, Solution Structure Of The Umud' Homodimer
pdb|1I4V|B Chain B, Solution Structure Of The Umud' Homodimer
Length = 115
Score = 31.2 bits (69), Expect = 2.6, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 291 FQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAI 343
F SP + V+ D+NQ + + A Y+ D+M + G++ G++L D AI
Sbjct: 2 FPSPAADYVEQRIDLNQLLIQHPSATYFVKASGDSMIDGGISDGDLLIVDSAI 54
>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
pdb|3IEG|B Chain B, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A
Length = 359
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 59/141 (41%), Gaps = 3/141 (2%)
Query: 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER 221
+LG L AG D + +++ A+ DP AYY V+ + AL K +
Sbjct: 8 ELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTKVIALK 67
Query: 222 PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKN-NMAIALTDLGTKTYGRA 280
+ A G + +G L+ A +++ L +P+ + K + D + +A
Sbjct: 68 XDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEXQRLRSQA 127
Query: 281 LLLFRLNGSNFQSPFFELVKL 301
L F +G+++ + L K+
Sbjct: 128 LDAF--DGADYTAAITFLDKI 146
Score = 29.6 bits (65), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/92 (21%), Positives = 38/92 (41%)
Query: 63 KFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC 122
+ DAL+ + ++ D N A+ + + A ++ + L A
Sbjct: 18 QLADALSQFHAAVDGDPDNYIAYYRRATVFLAXGKSKAALPDLTKVIALKXDFTAARLQR 77
Query: 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAE 154
G L +G+L EA + + K L ++PS + E
Sbjct: 78 GHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKE 109
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 30.8 bits (68), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Query: 321 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 380
YA A+ + G + K+D AI +Y A +NL Y +L K VE
Sbjct: 4 KYALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPV-FYSNLSACYVSVGDLKKVVEMS 62
Query: 381 QMALSIKPNFSQSL 394
AL +KP++S+ L
Sbjct: 63 TKALELKPDYSKVL 76
>pdb|4HOU|A Chain A, Crystal Structure Of N-terminal Human Ifit1
pdb|4HOU|B Chain B, Crystal Structure Of N-terminal Human Ifit1
Length = 273
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 38/90 (42%), Gaps = 8/90 (8%)
Query: 67 ALALYEIVLEKDSGNVEAHIG--------KGICLQMQNMGRLAFDSFSEAVKLDPQNACA 118
A A +E VLE D N E+ G G L +N + +AV+L+P N
Sbjct: 154 AKACFEKVLEVDPENPESSAGYAISAYRLDGFKLATKNHKPFSLLPLRQAVRLNPDNGYI 213
Query: 119 HTHCGILYKDEGRLVEAAESYHKALSADPS 148
+ +DEG+ E + +AL+ S
Sbjct: 214 KVLLALKLQDEGQEAEGEKYIEEALANXSS 243
>pdb|2F1Y|A Chain A, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Bound To A Mdm2 Peptide
Length = 159
Score = 30.4 bits (67), Expect = 4.8, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 12/54 (22%)
Query: 480 LFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPL 533
F DWG +S + +W DPE+ G++ D T V F++A L
Sbjct: 110 FFHKENDWG------FSNFMAWSEVTDPEK----GFIDDDKVTFEV--FVQADL 151
>pdb|1YY6|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With An Ebna1 Peptide
pdb|1YZE|A Chain A, Crystal Structure Of The N-Terminal Domain Of Usp7HAUSP.
pdb|1YZE|B Chain B, Crystal Structure Of The N-Terminal Domain Of Usp7HAUSP.
pdb|1YZE|C Chain C, Crystal Structure Of The N-Terminal Domain Of Usp7HAUSP.
pdb|2FOJ|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With P53 Peptide 364-367
pdb|2FOO|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With P53 Peptide 359-362
pdb|2FOP|A Chain A, The Crystal Strucure Of The N-Terminal Domain Of HauspUSP7
Complexed With Mdm2 Peptide 147-150
pdb|3MQR|A Chain A, Crystal Structure Of The Usp7:hdmx(Ahss) Complex
pdb|3MQS|C Chain C, Crystal Structure Of The Usp7:hdm2(Psts) Complex
Length = 155
Score = 30.4 bits (67), Expect = 4.8, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 10/53 (18%)
Query: 480 LFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAP 532
F DWG +S + +W DPE+ G++ D T V +AP
Sbjct: 108 FFHKENDWG------FSNFMAWSEVTDPEK----GFIDDDKVTFEVFVQADAP 150
>pdb|2XXN|A Chain A, Structure Of The Virf4-Hausp Traf Domain Complex
Length = 143
Score = 30.4 bits (67), Expect = 4.8, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 10/53 (18%)
Query: 480 LFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAP 532
F DWG +S + +W DPE+ G++ D T V +AP
Sbjct: 96 FFHKENDWG------FSNFMAWSEVTDPEK----GFIDDDKVTFEVFVQADAP 138
>pdb|2F1X|A Chain A, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Bound To A P53 Peptide
pdb|2F1X|B Chain B, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Bound To A P53 Peptide
Length = 161
Score = 30.4 bits (67), Expect = 4.8, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 10/53 (18%)
Query: 480 LFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAP 532
F DWG +S + +W DPE+ G++ D T V +AP
Sbjct: 110 FFHKENDWG------FSNFMAWSEVTDPEK----GFIDDDKVTFEVFVQADAP 152
>pdb|2F1W|A Chain A, Crystal Structure Of The Traf-Like Domain Of HauspUSP7
Length = 158
Score = 30.4 bits (67), Expect = 4.8, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 10/53 (18%)
Query: 480 LFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAP 532
F DWG +S + +W DPE+ G++ D T V +AP
Sbjct: 110 FFHKENDWG------FSNFMAWSEVTDPEK----GFIDDDKVTFEVFVQADAP 152
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 37/92 (40%)
Query: 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCN 230
G+ ++ Y EA+K DP A Y N ++LM++ AL + + + Y
Sbjct: 27 GDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR 86
Query: 231 MGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262
+ A YE L V P+ E A+
Sbjct: 87 KAACLVAMREWSKAQRAYEDALQVDPSNEEAR 118
>pdb|2KC7|A Chain A, Solution Nmr Structure Of Bacteroides Fragilis Protein
Bf1650. Northeast Structural Genomics Consortium Target
Bfr218
Length = 99
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 426 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYIN 473
EAY +G YR G A++ Y+ ++++PDS A Q R + M+ +N
Sbjct: 36 EAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP-ALQARKMVMDILN 82
>pdb|1HH8|A Chain A, The Active N-Terminal Region Of P67phox: Structure At 1.8
Angstrom Resolution And Biochemical Characterizations Of
The A128v Mutant Implicated In Chronic Granulomatous
Disease
Length = 213
Score = 29.6 bits (65), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/93 (20%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 128 DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID 187
+EG L + + AL A + + + + ++G + N + + + ++ D
Sbjct: 11 NEGVLAADKKDWKGALDA---FSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD 67
Query: 188 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALE 220
H A AY+ G++Y + +YD A+ ++A ++
Sbjct: 68 KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQ 100
>pdb|1E96|B Chain B, Structure Of The RacP67PHOX COMPLEX
Length = 203
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/93 (20%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 128 DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID 187
+EG L + + AL A + + + + ++G + N + + + ++ D
Sbjct: 11 NEGVLAADKKDWKGALDA---FSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD 67
Query: 188 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALE 220
H A AY+ G++Y + +YD A+ ++A ++
Sbjct: 68 KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQ 100
>pdb|1WM5|A Chain A, Crystal Structure Of The N-Terminal Tpr Domain (1-203) Of
P67phox
Length = 208
Score = 29.6 bits (65), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/93 (20%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 128 DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID 187
+EG L + + AL A + + + + ++G + N + + + ++ D
Sbjct: 16 NEGVLAADKKDWKGALDA---FSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD 72
Query: 188 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALE 220
H A AY+ G++Y + +YD A+ ++A ++
Sbjct: 73 KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQ 105
>pdb|4HOQ|A Chain A, Crystal Structure Of Full-length Human Ifit5
Length = 482
Score = 29.6 bits (65), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 48/223 (21%), Positives = 78/223 (34%), Gaps = 33/223 (14%)
Query: 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNM-------------GRLA 101
A R +N + AL L + LE + H G+C + Q + +L
Sbjct: 256 AKFYRRKNSWNKALELLKKALEVTPTSSFLHHQXGLCYRAQXIQIKKATHNRPKGKDKLK 315
Query: 102 FDS--------FSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAA 153
D F A + D A A+T Y + G+ A + + KAL +
Sbjct: 316 VDELISSAIFHFKAAXERDSXFAFAYTDLANXYAEGGQYSNAEDIFRKALRLENITDDHK 375
Query: 154 ECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGC 213
+ + + NT I Y EALK+ +P L S L + T C
Sbjct: 376 HQIHYHYGRFQEFHRKSENT--AIHHYLEALKVKDR-SPLRTKLT---SALKKLSTKRLC 429
Query: 214 YEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP 256
+ + ++ +G +YK G+ A YE+ + P
Sbjct: 430 H------NALDVQSLSALGFVYKLEGEKRQAAEYYEKAQKIDP 466
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,457,223
Number of Sequences: 62578
Number of extensions: 1205997
Number of successful extensions: 3566
Number of sequences better than 100.0: 89
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 3010
Number of HSP's gapped (non-prelim): 416
length of query: 944
length of database: 14,973,337
effective HSP length: 108
effective length of query: 836
effective length of database: 8,214,913
effective search space: 6867667268
effective search space used: 6867667268
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)