Query 002273
Match_columns 944
No_of_seqs 1680 out of 3923
Neff 9.6
Searched_HMMs 46136
Date Thu Mar 28 20:23:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002273.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002273hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4626 O-linked N-acetylgluco 100.0 1E-159 3E-164 1252.3 65.3 838 9-892 79-965 (966)
2 COG3914 Spy Predicted O-linked 100.0 1E-103 2E-108 836.5 52.4 547 307-873 49-619 (620)
3 PF13844 Glyco_transf_41: Glyc 100.0 2.1E-96 5E-101 797.2 29.3 351 511-869 1-468 (468)
4 KOG4626 O-linked N-acetylgluco 100.0 2.5E-43 5.5E-48 373.0 36.2 433 45-486 45-481 (966)
5 TIGR00990 3a0801s09 mitochondr 100.0 6.8E-33 1.5E-37 330.4 53.3 382 48-460 127-577 (615)
6 TIGR02917 PEP_TPR_lipo putativ 100.0 2.1E-32 4.5E-37 345.4 58.3 430 45-485 462-895 (899)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1E-30 2.3E-35 329.9 58.4 417 55-482 438-858 (899)
8 PRK11447 cellulose synthase su 100.0 8.7E-31 1.9E-35 332.0 55.8 441 43-487 176-737 (1157)
9 PRK11447 cellulose synthase su 100.0 4.1E-31 8.9E-36 335.0 52.7 397 53-460 274-749 (1157)
10 PRK15174 Vi polysaccharide exp 100.0 1E-29 2.3E-34 301.6 50.5 365 48-458 42-407 (656)
11 TIGR00990 3a0801s09 mitochondr 100.0 2.4E-29 5.1E-34 300.0 49.5 364 82-485 127-566 (615)
12 PRK15179 Vi polysaccharide bio 100.0 5.9E-29 1.3E-33 289.3 47.0 531 306-866 69-692 (694)
13 PRK15174 Vi polysaccharide exp 100.0 4.3E-29 9.3E-34 296.4 46.0 366 58-461 15-388 (656)
14 KOG2002 TPR-containing nuclear 100.0 9.2E-28 2E-32 269.4 43.3 414 43-456 159-711 (1018)
15 PRK09782 bacteriophage N4 rece 100.0 5E-27 1.1E-31 283.8 53.2 157 43-203 39-228 (987)
16 KOG0547 Translocase of outer m 100.0 9.5E-28 2E-32 249.9 38.6 379 48-457 115-569 (606)
17 PRK10049 pgaA outer membrane p 100.0 2.8E-27 6.1E-32 287.0 48.7 408 46-462 13-464 (765)
18 KOG2002 TPR-containing nuclear 100.0 3.6E-27 7.8E-32 264.7 38.9 417 47-471 306-762 (1018)
19 PRK10049 pgaA outer membrane p 100.0 1.4E-25 3.1E-30 272.1 48.6 410 68-489 2-455 (765)
20 KOG0548 Molecular co-chaperone 99.9 9.2E-25 2E-29 232.1 37.6 390 49-470 3-471 (539)
21 PRK09782 bacteriophage N4 rece 99.9 9.7E-24 2.1E-28 255.4 47.1 266 160-459 480-745 (987)
22 KOG0547 Translocase of outer m 99.9 3.8E-24 8.2E-29 223.2 35.1 362 83-483 116-559 (606)
23 PRK14574 hmsH outer membrane p 99.9 1E-22 2.2E-27 241.6 49.7 414 43-464 29-489 (822)
24 KOG1155 Anaphase-promoting com 99.9 4.2E-23 9E-28 214.4 39.3 367 47-457 163-539 (559)
25 KOG1126 DNA-binding cell divis 99.9 1.6E-24 3.5E-29 235.9 27.6 307 117-460 318-626 (638)
26 KOG1173 Anaphase-promoting com 99.9 3.6E-23 7.7E-28 220.4 37.1 388 46-464 47-528 (611)
27 KOG1155 Anaphase-promoting com 99.9 2.3E-22 4.9E-27 208.9 41.1 390 47-455 77-496 (559)
28 KOG1126 DNA-binding cell divis 99.9 2.8E-24 6.1E-29 234.0 27.3 296 94-426 331-626 (638)
29 KOG0624 dsRNA-activated protei 99.9 1.4E-22 3.1E-27 202.2 35.6 334 42-393 32-377 (504)
30 PRK14574 hmsH outer membrane p 99.9 2E-21 4.2E-26 230.8 47.7 396 75-482 27-471 (822)
31 PRK11788 tetratricopeptide rep 99.9 3.2E-22 6.8E-27 226.7 39.0 323 160-523 38-370 (389)
32 PRK11788 tetratricopeptide rep 99.9 6.8E-22 1.5E-26 224.0 40.1 304 82-453 35-346 (389)
33 KOG2076 RNA polymerase III tra 99.9 1.8E-21 3.9E-26 218.1 41.2 387 47-451 138-552 (895)
34 KOG2003 TPR repeat-containing 99.9 2E-22 4.3E-27 207.4 29.8 270 165-464 427-699 (840)
35 KOG1173 Anaphase-promoting com 99.9 7.1E-21 1.5E-25 203.0 36.2 437 43-483 11-511 (611)
36 KOG4162 Predicted calmodulin-b 99.9 2.5E-20 5.4E-25 205.6 40.4 413 46-460 321-789 (799)
37 KOG0624 dsRNA-activated protei 99.9 4E-21 8.7E-26 191.9 29.8 327 78-463 34-379 (504)
38 KOG2003 TPR repeat-containing 99.9 3E-21 6.4E-26 198.8 27.2 248 171-449 470-717 (840)
39 KOG0495 HAT repeat protein [RN 99.9 1.7E-19 3.7E-24 194.2 41.5 371 50-462 518-888 (913)
40 KOG2076 RNA polymerase III tra 99.9 1.3E-19 2.9E-24 203.3 42.4 365 82-457 139-513 (895)
41 KOG1174 Anaphase-promoting com 99.9 2.4E-19 5.2E-24 183.6 36.4 384 42-464 91-510 (564)
42 KOG0548 Molecular co-chaperone 99.9 1.2E-19 2.7E-24 193.3 34.4 361 51-450 39-485 (539)
43 KOG0495 HAT repeat protein [RN 99.9 3.1E-18 6.7E-23 184.6 44.0 389 48-480 479-870 (913)
44 PLN03218 maturation of RBCL 1; 99.9 1.2E-16 2.6E-21 195.5 55.5 365 47-453 369-747 (1060)
45 KOG1129 TPR repeat-containing 99.9 1.1E-18 2.4E-23 173.6 29.6 383 50-465 6-469 (478)
46 TIGR00540 hemY_coli hemY prote 99.8 5.7E-18 1.2E-22 191.3 39.5 302 119-454 87-399 (409)
47 PLN03081 pentatricopeptide (PP 99.8 3.3E-17 7.2E-22 198.7 47.1 419 47-486 86-553 (697)
48 PLN03077 Protein ECB2; Provisi 99.8 3E-17 6.6E-22 204.0 47.4 414 49-485 254-715 (857)
49 PLN03081 pentatricopeptide (PP 99.8 1.5E-17 3.2E-22 201.9 42.6 401 46-454 121-557 (697)
50 TIGR00540 hemY_coli hemY prote 99.8 1.5E-17 3.2E-22 187.9 39.2 301 49-419 85-398 (409)
51 PF13429 TPR_15: Tetratricopep 99.8 1.9E-20 4E-25 201.1 14.2 261 162-454 13-277 (280)
52 KOG1156 N-terminal acetyltrans 99.8 1.1E-16 2.5E-21 173.7 41.6 372 47-459 6-439 (700)
53 PLN03218 maturation of RBCL 1; 99.8 7.1E-16 1.5E-20 188.7 53.6 362 54-457 412-786 (1060)
54 PRK10747 putative protoheme IX 99.8 4.7E-17 1E-21 182.8 39.4 303 119-455 87-391 (398)
55 PF13429 TPR_15: Tetratricopep 99.8 4.7E-20 1E-24 198.0 14.5 260 87-385 13-276 (280)
56 PRK12370 invasion protein regu 99.8 6.7E-18 1.4E-22 197.9 33.5 195 64-265 277-481 (553)
57 KOG1174 Anaphase-promoting com 99.8 1.6E-17 3.4E-22 170.4 31.5 299 55-390 205-504 (564)
58 KOG1127 TPR repeat-containing 99.8 1.2E-17 2.6E-22 188.0 32.2 390 61-457 471-916 (1238)
59 PRK12370 invasion protein regu 99.8 8.6E-18 1.9E-22 196.9 32.2 244 172-447 276-529 (553)
60 KOG1125 TPR repeat-containing 99.8 1.1E-18 2.4E-23 187.5 21.7 259 161-442 289-559 (579)
61 KOG1129 TPR repeat-containing 99.8 1.3E-18 2.9E-23 173.0 20.0 280 124-434 187-472 (478)
62 PRK10747 putative protoheme IX 99.8 2E-16 4.3E-21 177.7 39.8 293 87-420 89-390 (398)
63 KOG4162 Predicted calmodulin-b 99.8 1.3E-16 2.7E-21 176.7 36.8 372 47-425 356-788 (799)
64 KOG1125 TPR repeat-containing 99.8 1.3E-18 2.8E-23 187.1 20.7 266 47-342 284-561 (579)
65 PLN03077 Protein ECB2; Provisi 99.8 1.4E-16 3.1E-21 198.0 41.0 393 47-454 322-720 (857)
66 COG3063 PilF Tfp pilus assembl 99.8 4.6E-17 1E-21 156.1 25.4 213 44-261 31-243 (250)
67 KOG0550 Molecular chaperone (D 99.8 6.4E-18 1.4E-22 173.9 20.1 299 46-422 47-352 (486)
68 COG2956 Predicted N-acetylgluc 99.8 9.2E-16 2E-20 153.4 33.7 322 163-526 41-373 (389)
69 PRK11189 lipoprotein NlpI; Pro 99.8 1.8E-16 4E-21 170.4 29.9 232 129-398 39-278 (296)
70 KOG1915 Cell cycle control pro 99.8 5.6E-14 1.2E-18 146.9 46.2 400 47-456 72-502 (677)
71 PRK11189 lipoprotein NlpI; Pro 99.8 2.6E-16 5.7E-21 169.2 28.4 100 171-270 40-143 (296)
72 KOG1127 TPR repeat-containing 99.8 2.6E-16 5.6E-21 177.4 28.5 407 51-467 402-892 (1238)
73 TIGR02521 type_IV_pilW type IV 99.8 4.3E-16 9.4E-21 162.4 28.9 206 45-255 28-233 (234)
74 KOG2376 Signal recognition par 99.8 1.4E-14 2.9E-19 156.1 39.4 415 47-472 11-505 (652)
75 COG3063 PilF Tfp pilus assembl 99.8 4E-16 8.8E-21 149.7 24.5 155 306-460 86-242 (250)
76 KOG1156 N-terminal acetyltrans 99.7 8.6E-15 1.9E-19 159.2 37.3 348 82-462 7-408 (700)
77 PRK15490 Vi polysaccharide bio 99.7 6.1E-16 1.3E-20 171.9 29.0 260 578-867 269-575 (578)
78 KOG0550 Molecular chaperone (D 99.7 7.7E-17 1.7E-21 166.0 19.9 286 157-457 49-353 (486)
79 TIGR02521 type_IV_pilW type IV 99.7 1.1E-15 2.5E-20 159.2 28.3 202 191-456 31-234 (234)
80 KOG1840 Kinesin light chain [C 99.7 8.1E-15 1.8E-19 163.1 32.9 238 187-454 195-479 (508)
81 COG2956 Predicted N-acetylgluc 99.7 1.5E-14 3.2E-19 144.9 31.0 297 120-451 39-344 (389)
82 KOG3785 Uncharacterized conser 99.7 7.3E-14 1.6E-18 140.9 35.2 375 56-451 30-419 (557)
83 PLN02789 farnesyltranstransfer 99.7 2.6E-15 5.6E-20 160.6 26.6 210 201-438 47-268 (320)
84 KOG1840 Kinesin light chain [C 99.7 6.1E-15 1.3E-19 164.1 29.9 241 157-420 199-479 (508)
85 PLN02789 farnesyltranstransfer 99.7 1.4E-14 3E-19 155.0 28.2 211 129-369 50-267 (320)
86 cd05804 StaR_like StaR_like; a 99.7 1.4E-13 3E-18 153.8 36.7 314 78-455 2-337 (355)
87 KOG1915 Cell cycle control pro 99.7 5E-12 1.1E-16 132.5 44.7 408 46-464 105-545 (677)
88 cd05804 StaR_like StaR_like; a 99.7 3.6E-13 7.9E-18 150.5 35.8 208 44-256 2-217 (355)
89 KOG3785 Uncharacterized conser 99.6 4.9E-13 1.1E-17 135.0 30.2 377 49-460 58-496 (557)
90 KOG2376 Signal recognition par 99.6 9E-12 2E-16 134.7 40.2 398 45-449 43-515 (652)
91 PLN02949 transferase, transfer 99.6 5.7E-13 1.2E-17 151.1 29.6 176 683-870 269-459 (463)
92 TIGR03302 OM_YfiO outer membra 99.6 3.3E-13 7.2E-18 141.1 24.2 190 43-256 28-234 (235)
93 PF12569 NARP1: NMDA receptor- 99.6 4.9E-11 1.1E-15 135.0 41.0 276 47-352 3-334 (517)
94 TIGR03088 stp2 sugar transfera 99.5 1.3E-12 2.9E-17 147.1 26.2 166 679-868 191-373 (374)
95 PRK14720 transcript cleavage f 99.5 2.2E-12 4.8E-17 151.6 28.4 290 76-462 25-314 (906)
96 COG3071 HemY Uncharacterized e 99.5 1.2E-10 2.6E-15 121.2 36.9 298 123-454 91-390 (400)
97 TIGR03302 OM_YfiO outer membra 99.5 1.2E-12 2.6E-17 136.8 22.9 183 78-281 29-225 (235)
98 cd03796 GT1_PIG-A_like This fa 99.5 9.4E-13 2E-17 149.3 23.8 262 579-870 78-370 (398)
99 PRK15359 type III secretion sy 99.5 2E-13 4.3E-18 129.5 15.1 122 344-468 14-135 (144)
100 KOG1130 Predicted G-alpha GTPa 99.5 2.1E-13 4.6E-18 140.1 16.1 286 123-455 24-345 (639)
101 COG3071 HemY Uncharacterized e 99.5 1.2E-10 2.6E-15 121.1 36.3 295 86-420 88-390 (400)
102 PLN02871 UDP-sulfoquinovose:DA 99.5 1E-12 2.2E-17 151.9 23.4 342 508-875 56-442 (465)
103 KOG1130 Predicted G-alpha GTPa 99.5 4.3E-13 9.3E-18 137.9 16.6 296 89-443 24-373 (639)
104 PRK15359 type III secretion sy 99.5 4.7E-13 1E-17 127.0 15.4 128 308-438 12-139 (144)
105 PRK15427 colanic acid biosynth 99.5 4.9E-13 1.1E-17 150.9 18.3 165 681-867 221-405 (406)
106 PF12569 NARP1: NMDA receptor- 99.5 3.7E-11 7.9E-16 136.0 33.0 298 158-458 5-338 (517)
107 PRK04841 transcriptional regul 99.5 1.7E-10 3.7E-15 145.7 41.5 386 50-459 343-765 (903)
108 cd03801 GT1_YqgM_like This fam 99.5 1.6E-12 3.5E-17 145.3 20.3 340 512-866 1-374 (374)
109 PRK10370 formate-dependent nit 99.5 2.9E-12 6.4E-17 128.3 19.1 152 298-460 25-179 (198)
110 KOG4340 Uncharacterized conser 99.5 6E-11 1.3E-15 117.5 26.7 386 56-462 18-451 (459)
111 cd05844 GT1_like_7 Glycosyltra 99.4 2.1E-12 4.7E-17 145.0 18.9 165 683-863 191-366 (367)
112 PRK14720 transcript cleavage f 99.4 3.2E-11 7E-16 142.0 28.8 285 42-424 25-310 (906)
113 KOG3060 Uncharacterized conser 99.4 1.5E-10 3.2E-15 113.0 27.9 186 187-402 48-236 (289)
114 cd03820 GT1_amsD_like This fam 99.4 8.4E-12 1.8E-16 138.4 22.2 319 512-862 1-347 (348)
115 cd03822 GT1_ecORF704_like This 99.4 1.3E-11 2.8E-16 138.4 23.7 336 512-866 1-366 (366)
116 PRK10370 formate-dependent nit 99.4 1.4E-11 3E-16 123.4 20.7 125 302-426 52-179 (198)
117 cd03792 GT1_Trehalose_phosphor 99.4 4.4E-11 9.5E-16 134.5 27.2 334 512-867 1-371 (372)
118 PRK04841 transcriptional regul 99.4 9.1E-10 2E-14 139.1 39.7 349 49-424 375-764 (903)
119 COG5010 TadD Flp pilus assembl 99.4 3.6E-11 7.9E-16 118.8 20.9 176 244-450 52-227 (257)
120 KOG2047 mRNA splicing factor [ 99.4 8.8E-09 1.9E-13 112.6 40.7 376 48-452 102-613 (835)
121 cd03807 GT1_WbnK_like This fam 99.4 3E-11 6.5E-16 135.0 23.4 325 513-866 2-365 (365)
122 PRK15484 lipopolysaccharide 1, 99.4 1.3E-11 2.7E-16 138.6 20.1 177 677-868 188-378 (380)
123 KOG2047 mRNA splicing factor [ 99.4 1.1E-08 2.3E-13 111.9 41.2 405 43-456 22-542 (835)
124 KOG3060 Uncharacterized conser 99.4 9.1E-11 2E-15 114.4 22.5 171 302-472 65-238 (289)
125 cd04962 GT1_like_5 This family 99.4 1.1E-11 2.3E-16 139.6 19.0 176 676-868 191-371 (371)
126 TIGR03449 mycothiol_MshA UDP-N 99.4 1.4E-11 3.1E-16 140.3 20.1 206 650-869 186-403 (405)
127 cd03813 GT1_like_3 This family 99.4 1.1E-11 2.3E-16 143.3 18.2 173 680-866 291-475 (475)
128 cd03818 GT1_ExpC_like This fam 99.4 1E-11 2.3E-16 140.7 17.5 202 648-861 174-394 (396)
129 cd03805 GT1_ALG2_like This fam 99.4 2.5E-11 5.5E-16 137.7 20.2 173 678-861 207-392 (392)
130 KOG1128 Uncharacterized conser 99.4 4.6E-11 9.9E-16 132.5 21.0 226 189-459 396-621 (777)
131 cd03811 GT1_WabH_like This fam 99.4 4E-11 8.7E-16 133.1 21.4 317 512-846 1-347 (353)
132 TIGR02552 LcrH_SycD type III s 99.4 2.1E-11 4.5E-16 115.2 15.7 119 344-462 4-122 (135)
133 cd03799 GT1_amsK_like This is 99.3 1E-10 2.2E-15 130.7 23.7 327 512-860 1-354 (355)
134 cd03812 GT1_CapH_like This fam 99.3 5.8E-11 1.3E-15 132.9 21.7 314 512-846 1-346 (358)
135 cd03821 GT1_Bme6_like This fam 99.3 1.1E-10 2.4E-15 131.0 23.6 174 677-862 198-374 (375)
136 cd03806 GT1_ALG11_like This fa 99.3 1.6E-11 3.4E-16 139.3 16.5 169 680-859 235-418 (419)
137 COG5010 TadD Flp pilus assembl 99.3 1.5E-10 3.2E-15 114.5 21.0 179 64-250 49-227 (257)
138 cd04951 GT1_WbdM_like This fam 99.3 3.7E-11 8.1E-16 134.5 19.1 171 677-866 183-359 (360)
139 KOG0553 TPR repeat-containing 99.3 1.8E-11 3.9E-16 123.1 13.3 113 357-469 81-193 (304)
140 KOG1128 Uncharacterized conser 99.3 8.5E-10 1.8E-14 122.6 27.2 204 47-272 397-600 (777)
141 cd03798 GT1_wlbH_like This fam 99.3 7.8E-11 1.7E-15 132.0 19.4 325 523-867 14-376 (377)
142 cd03817 GT1_UGDG_like This fam 99.3 7.5E-11 1.6E-15 132.4 18.9 172 678-867 198-373 (374)
143 KOG0553 TPR repeat-containing 99.3 3.4E-11 7.4E-16 121.1 13.9 123 153-275 77-199 (304)
144 TIGR02472 sucr_P_syn_N sucrose 99.3 1.1E-10 2.4E-15 133.8 19.9 166 681-865 247-438 (439)
145 TIGR02552 LcrH_SycD type III s 99.3 9E-11 1.9E-15 110.9 15.6 119 310-428 4-122 (135)
146 PRK15179 Vi polysaccharide bio 99.3 4E-10 8.6E-15 132.5 23.6 149 106-261 76-224 (694)
147 PRK15363 pathogenicity island 99.3 1.1E-10 2.4E-15 108.1 14.6 105 351-455 28-133 (157)
148 PRK09922 UDP-D-galactose:(gluc 99.3 7.1E-11 1.5E-15 131.9 16.3 325 511-869 1-357 (359)
149 PRK10307 putative glycosyl tra 99.3 1.4E-10 3E-15 132.4 18.6 176 676-870 223-410 (412)
150 TIGR02149 glgA_Coryne glycogen 99.2 1.6E-10 3.5E-15 130.9 18.2 178 677-868 196-387 (388)
151 PLN02939 transferase, transfer 99.2 2.4E-10 5.3E-15 134.3 19.1 172 676-871 770-970 (977)
152 cd03795 GT1_like_4 This family 99.2 2.7E-10 5.9E-15 127.3 18.9 253 585-857 79-356 (357)
153 cd03808 GT1_cap1E_like This fa 99.2 1.4E-09 3.1E-14 121.0 24.5 169 679-862 185-358 (359)
154 PF04733 Coatomer_E: Coatomer 99.2 1.3E-10 2.9E-15 123.0 15.0 168 191-391 102-270 (290)
155 cd03825 GT1_wcfI_like This fam 99.2 6.4E-10 1.4E-14 124.8 20.9 166 682-867 193-364 (365)
156 cd03823 GT1_ExpE7_like This fa 99.2 2.3E-10 5.1E-15 127.7 17.0 166 678-866 187-358 (359)
157 PF04733 Coatomer_E: Coatomer 99.2 1.4E-10 3E-15 122.9 13.7 257 167-462 11-273 (290)
158 TIGR02468 sucrsPsyn_pln sucros 99.2 4.9E-10 1.1E-14 134.1 19.5 179 680-872 477-675 (1050)
159 cd04955 GT1_like_6 This family 99.2 1.7E-09 3.6E-14 121.3 22.8 153 690-866 203-363 (363)
160 cd04949 GT1_gtfA_like This fam 99.2 4.7E-10 1E-14 126.3 18.2 158 684-859 206-370 (372)
161 TIGR03087 stp1 sugar transfera 99.2 4.4E-10 9.6E-15 127.4 18.1 163 683-867 225-396 (397)
162 cd03819 GT1_WavL_like This fam 99.2 1.5E-10 3.2E-15 129.4 13.8 263 579-855 68-353 (355)
163 cd03814 GT1_like_2 This family 99.2 5.7E-10 1.2E-14 124.9 18.6 165 680-866 195-364 (364)
164 cd03802 GT1_AviGT4_like This f 99.2 2.2E-09 4.7E-14 118.9 23.0 312 512-866 2-335 (335)
165 cd03800 GT1_Sucrose_synthase T 99.2 1.4E-09 3.1E-14 123.6 22.1 175 678-862 216-397 (398)
166 TIGR02918 accessory Sec system 99.2 3.8E-10 8.2E-15 129.5 17.1 164 684-867 321-499 (500)
167 PRK15363 pathogenicity island 99.2 7E-10 1.5E-14 102.8 15.4 105 45-149 32-136 (157)
168 cd04946 GT1_AmsK_like This fam 99.2 2.7E-10 5.8E-15 129.1 15.6 166 680-861 228-405 (407)
169 PLN02501 digalactosyldiacylgly 99.2 1.9E-10 4.1E-15 129.8 13.6 260 577-864 422-706 (794)
170 cd03809 GT1_mtfB_like This fam 99.2 1.3E-09 2.8E-14 122.1 20.8 168 681-862 194-364 (365)
171 TIGR02470 sucr_synth sucrose s 99.2 5E-10 1.1E-14 131.4 17.6 173 681-870 549-752 (784)
172 PLN00142 sucrose synthase 99.2 6.1E-10 1.3E-14 130.6 17.9 180 682-873 573-777 (815)
173 KOG1111 N-acetylglucosaminyltr 99.2 5.2E-10 1.1E-14 114.4 15.0 209 629-869 144-368 (426)
174 PLN02316 synthase/transferase 99.2 7.1E-10 1.5E-14 133.1 18.7 171 676-868 833-1034(1036)
175 KOG4340 Uncharacterized conser 99.1 8.5E-09 1.8E-13 102.5 21.8 361 46-426 42-449 (459)
176 PLN02846 digalactosyldiacylgly 99.1 5E-10 1.1E-14 125.1 14.9 201 636-866 181-390 (462)
177 PRK10866 outer membrane biogen 99.1 1.5E-08 3.3E-13 104.8 24.5 183 45-251 29-238 (243)
178 COG4783 Putative Zn-dependent 99.1 2.2E-08 4.7E-13 107.4 23.8 157 78-258 302-458 (484)
179 PF13525 YfiO: Outer membrane 99.1 1.5E-08 3.3E-13 102.4 21.2 176 46-245 3-198 (203)
180 COG4783 Putative Zn-dependent 99.1 2.8E-08 6E-13 106.6 23.3 157 320-476 303-459 (484)
181 PF00534 Glycos_transf_1: Glyc 99.1 9E-10 2E-14 108.9 11.4 156 678-845 11-172 (172)
182 PRK00654 glgA glycogen synthas 99.1 4.6E-09 9.9E-14 121.2 18.5 162 681-870 281-465 (466)
183 PLN03088 SGT1, suppressor of 99.1 3.5E-09 7.6E-14 116.6 16.7 108 49-156 3-110 (356)
184 PLN03088 SGT1, suppressor of 99.0 3.9E-09 8.5E-14 116.2 16.7 108 328-435 7-114 (356)
185 PRK14098 glycogen synthase; Pr 99.0 4.7E-09 1E-13 120.8 17.9 163 680-869 305-487 (489)
186 PRK10866 outer membrane biogen 99.0 5E-08 1.1E-12 101.0 23.1 182 80-282 30-235 (243)
187 cd03804 GT1_wbaZ_like This fam 99.0 1.1E-08 2.4E-13 114.0 19.8 150 682-861 197-350 (351)
188 KOG1941 Acetylcholine receptor 99.0 1.1E-07 2.3E-12 97.4 24.2 243 158-454 84-360 (518)
189 cd03816 GT1_ALG1_like This fam 99.0 7.6E-09 1.7E-13 117.6 17.5 153 680-846 230-399 (415)
190 PRK14099 glycogen synthase; Pr 99.0 1.3E-08 2.8E-13 117.1 19.0 161 681-870 294-481 (485)
191 PRK05749 3-deoxy-D-manno-octul 99.0 1.7E-08 3.8E-13 115.4 19.5 153 686-849 237-406 (425)
192 TIGR02095 glgA glycogen/starch 99.0 1E-08 2.2E-13 118.9 17.5 160 681-867 290-472 (473)
193 PHA01630 putative group 1 glyc 99.0 1.8E-08 3.8E-13 109.9 17.2 155 681-867 141-330 (331)
194 KOG3617 WD40 and TPR repeat-co 99.0 7.4E-07 1.6E-11 99.9 29.6 325 59-451 739-1171(1416)
195 TIGR02795 tol_pal_ybgF tol-pal 98.9 1.7E-08 3.7E-13 92.7 14.5 105 358-462 3-113 (119)
196 PF13525 YfiO: Outer membrane 98.9 7.4E-08 1.6E-12 97.4 20.2 175 81-276 4-195 (203)
197 cd03794 GT1_wbuB_like This fam 98.9 1.6E-08 3.5E-13 114.1 17.1 169 678-861 216-393 (394)
198 PF14938 SNAP: Soluble NSF att 98.9 2.9E-08 6.2E-13 106.1 17.0 182 63-260 30-231 (282)
199 KOG2053 Mitochondrial inherita 98.9 3.1E-05 6.7E-10 89.0 41.4 200 51-258 12-259 (932)
200 PHA01633 putative glycosyl tra 98.9 2.5E-08 5.4E-13 107.3 16.3 96 682-791 148-253 (335)
201 PRK13609 diacylglycerol glucos 98.9 4.2E-08 9.1E-13 110.6 18.8 262 579-866 94-370 (380)
202 PLN02605 monogalactosyldiacylg 98.9 6.7E-08 1.4E-12 108.7 19.8 265 579-864 90-378 (382)
203 TIGR02795 tol_pal_ybgF tol-pal 98.9 4E-08 8.6E-13 90.3 14.8 105 48-152 2-112 (119)
204 KOG1941 Acetylcholine receptor 98.9 6.4E-07 1.4E-11 91.9 24.3 313 47-419 5-359 (518)
205 PRK10125 putative glycosyl tra 98.9 2.3E-08 5E-13 112.6 15.7 147 681-867 240-404 (405)
206 KOG1070 rRNA processing protei 98.9 7.9E-07 1.7E-11 105.5 28.2 224 208-458 1441-1667(1710)
207 CHL00033 ycf3 photosystem I as 98.9 4.5E-08 9.7E-13 96.1 15.4 124 58-181 9-137 (168)
208 COG4235 Cytochrome c biogenesi 98.9 5.2E-08 1.1E-12 99.4 16.0 122 339-460 138-262 (287)
209 PRK13608 diacylglycerol glucos 98.9 7.1E-08 1.5E-12 108.7 19.0 160 692-870 215-374 (391)
210 COG3898 Uncharacterized membra 98.9 1.2E-05 2.5E-10 83.7 32.9 296 122-453 90-391 (531)
211 cd00189 TPR Tetratricopeptide 98.9 2.6E-08 5.7E-13 86.7 12.2 99 359-457 2-100 (100)
212 PF13414 TPR_11: TPR repeat; P 98.9 9.9E-09 2.2E-13 83.9 8.5 67 390-456 2-69 (69)
213 COG4785 NlpI Lipoprotein NlpI, 98.9 1.2E-07 2.5E-12 90.5 16.5 106 156-261 64-169 (297)
214 PRK02603 photosystem I assembl 98.8 5.2E-08 1.1E-12 96.0 14.1 119 321-459 33-154 (172)
215 KOG3617 WD40 and TPR repeat-co 98.8 7.5E-06 1.6E-10 92.1 32.0 308 51-383 803-1171(1416)
216 CHL00033 ycf3 photosystem I as 98.8 7.4E-08 1.6E-12 94.6 15.1 99 304-402 14-117 (168)
217 COG0457 NrfG FOG: TPR repeat [ 98.8 8.5E-06 1.8E-10 84.2 31.8 152 306-457 112-268 (291)
218 COG4235 Cytochrome c biogenesi 98.8 9.8E-08 2.1E-12 97.4 16.0 123 303-425 136-261 (287)
219 PF09976 TPR_21: Tetratricopep 98.8 2E-07 4.3E-12 88.9 17.0 117 335-452 23-145 (145)
220 COG0457 NrfG FOG: TPR repeat [ 98.8 1.8E-05 3.8E-10 81.8 33.6 225 130-389 37-268 (291)
221 PF14938 SNAP: Soluble NSF att 98.8 2.8E-07 6.1E-12 98.5 19.9 109 357-465 114-236 (282)
222 cd03791 GT1_Glycogen_synthase_ 98.8 5.9E-08 1.3E-12 113.0 15.9 160 680-866 294-475 (476)
223 KOG3081 Vesicle coat complex C 98.8 2.3E-06 4.9E-11 84.9 23.9 169 190-391 107-276 (299)
224 KOG4648 Uncharacterized conser 98.8 2.9E-09 6.4E-14 107.7 4.0 108 50-157 99-206 (536)
225 KOG1070 rRNA processing protei 98.8 2.4E-06 5.2E-11 101.5 28.2 222 98-353 1440-1664(1710)
226 PRK10153 DNA-binding transcrip 98.8 1.8E-07 3.9E-12 107.2 18.7 142 318-460 332-488 (517)
227 PF13692 Glyco_trans_1_4: Glyc 98.8 1.1E-08 2.3E-13 96.6 7.3 128 682-831 2-135 (135)
228 PRK10803 tol-pal system protei 98.8 2.6E-07 5.7E-12 96.2 18.1 107 46-152 140-253 (263)
229 PF13414 TPR_11: TPR repeat; P 98.8 2.6E-08 5.6E-13 81.4 8.4 67 356-422 2-69 (69)
230 COG4785 NlpI Lipoprotein NlpI, 98.8 9.5E-07 2.1E-11 84.4 19.6 199 46-256 63-268 (297)
231 cd00189 TPR Tetratricopeptide 98.8 7.2E-08 1.6E-12 83.9 11.7 99 50-148 2-100 (100)
232 KOG1914 mRNA cleavage and poly 98.8 0.00054 1.2E-08 74.7 42.5 422 42-483 14-494 (656)
233 PRK02603 photosystem I assembl 98.8 2.3E-07 4.9E-12 91.4 16.2 73 80-152 33-108 (172)
234 KOG0543 FKBP-type peptidyl-pro 98.8 1.8E-07 3.9E-12 98.7 15.8 123 324-465 209-331 (397)
235 PF12895 Apc3: Anaphase-promot 98.7 2.5E-08 5.4E-13 85.1 7.2 82 60-142 1-84 (84)
236 PF13432 TPR_16: Tetratricopep 98.7 3.1E-08 6.7E-13 79.8 7.4 64 396-459 2-65 (65)
237 KOG2300 Uncharacterized conser 98.7 0.00067 1.5E-08 72.9 41.0 406 47-458 6-518 (629)
238 PF09976 TPR_21: Tetratricopep 98.7 6.5E-07 1.4E-11 85.3 17.5 127 49-183 12-144 (145)
239 TIGR00236 wecB UDP-N-acetylglu 98.7 7E-07 1.5E-11 100.0 20.6 297 522-840 9-343 (365)
240 PF13432 TPR_16: Tetratricopep 98.7 4.5E-08 9.9E-13 78.8 7.5 65 52-116 1-65 (65)
241 PF12895 Apc3: Anaphase-promot 98.7 3.6E-08 7.8E-13 84.1 7.3 81 370-451 2-84 (84)
242 KOG4648 Uncharacterized conser 98.7 1.1E-08 2.3E-13 103.7 4.4 240 160-463 100-339 (536)
243 TIGR02400 trehalose_OtsA alpha 98.7 5.4E-07 1.2E-11 102.3 18.6 173 681-865 258-454 (456)
244 PRK11906 transcriptional regul 98.7 9.5E-07 2.1E-11 95.8 19.2 160 50-216 257-432 (458)
245 PRK11906 transcriptional regul 98.7 5.8E-07 1.3E-11 97.4 17.6 147 304-450 273-432 (458)
246 PRK15331 chaperone protein Sic 98.7 1.8E-07 4E-12 87.2 11.9 105 353-458 33-137 (165)
247 COG3898 Uncharacterized membra 98.7 5.7E-05 1.2E-09 78.8 30.9 96 48-144 120-216 (531)
248 KOG2053 Mitochondrial inherita 98.7 0.00074 1.6E-08 78.1 42.7 431 44-479 39-559 (932)
249 PRK15331 chaperone protein Sic 98.7 3.1E-07 6.7E-12 85.7 13.2 107 42-149 31-137 (165)
250 KOG3081 Vesicle coat complex C 98.7 1.1E-05 2.4E-10 80.1 24.4 254 167-460 18-277 (299)
251 PRK00726 murG undecaprenyldiph 98.7 3.2E-07 6.9E-12 102.5 16.0 261 579-866 81-356 (357)
252 PRK10153 DNA-binding transcrip 98.7 6.6E-07 1.4E-11 102.6 18.7 144 75-226 330-488 (517)
253 PRK10803 tol-pal system protei 98.7 5E-07 1.1E-11 94.1 15.9 106 357-462 142-254 (263)
254 cd03785 GT1_MurG MurG is an N- 98.7 4.1E-07 9E-12 101.4 16.0 155 676-846 175-339 (350)
255 cd03788 GT1_TPS Trehalose-6-Ph 98.7 4.3E-07 9.3E-12 104.1 16.3 171 680-863 262-457 (460)
256 COG1729 Uncharacterized protei 98.6 1.5E-06 3.3E-11 87.8 17.9 106 47-152 140-251 (262)
257 KOG0543 FKBP-type peptidyl-pro 98.6 5.7E-07 1.2E-11 95.0 14.8 138 119-256 211-357 (397)
258 COG4105 ComL DNA uptake lipopr 98.6 1E-05 2.3E-10 81.0 22.7 190 45-258 31-237 (254)
259 KOG2471 TPR repeat-containing 98.6 1.1E-05 2.4E-10 86.1 23.4 157 47-203 205-381 (696)
260 cd03786 GT1_UDP-GlcNAc_2-Epime 98.6 9.3E-07 2E-11 99.1 17.0 294 528-839 14-345 (363)
261 PF09295 ChAPs: ChAPs (Chs5p-A 98.6 1.2E-06 2.5E-11 96.0 16.4 122 327-451 173-294 (395)
262 PRK00025 lpxB lipid-A-disaccha 98.6 4.5E-07 9.7E-12 102.3 13.6 139 693-846 202-356 (380)
263 KOG1914 mRNA cleavage and poly 98.6 0.00077 1.7E-08 73.6 36.3 376 72-475 10-451 (656)
264 COG4105 ComL DNA uptake lipopr 98.6 2.1E-05 4.5E-10 78.9 22.7 184 81-285 33-230 (254)
265 PF09295 ChAPs: ChAPs (Chs5p-A 98.5 1.8E-06 4E-11 94.5 16.3 118 297-417 177-294 (395)
266 KOG2300 Uncharacterized conser 98.5 0.0027 5.9E-08 68.5 40.1 371 82-455 7-475 (629)
267 PF13512 TPR_18: Tetratricopep 98.5 3E-06 6.5E-11 77.5 14.4 107 46-152 8-135 (142)
268 PLN02275 transferase, transfer 98.5 6.5E-07 1.4E-11 100.3 12.4 131 683-828 214-370 (371)
269 COG4700 Uncharacterized protei 98.5 2.6E-05 5.6E-10 73.1 20.5 149 303-453 70-221 (251)
270 KOG4234 TPR repeat-containing 98.5 9E-07 2E-11 83.5 10.6 105 360-464 98-207 (271)
271 PF07079 DUF1347: Protein of u 98.5 0.0033 7.3E-08 67.4 42.0 137 50-186 8-157 (549)
272 PF12688 TPR_5: Tetratrico pep 98.5 3.1E-06 6.7E-11 76.3 13.6 94 325-418 3-102 (120)
273 TIGR01133 murG undecaprenyldip 98.5 1.7E-06 3.8E-11 96.2 14.8 155 677-846 174-336 (348)
274 KOG1387 Glycosyltransferase [C 98.5 7.4E-06 1.6E-10 83.9 17.3 271 581-870 142-461 (465)
275 KOG4234 TPR repeat-containing 98.5 2E-06 4.3E-11 81.2 12.2 106 49-154 96-206 (271)
276 PF14559 TPR_19: Tetratricopep 98.5 4.4E-07 9.5E-12 73.8 7.1 67 58-124 1-67 (68)
277 cd04950 GT1_like_1 Glycosyltra 98.5 3.2E-06 7E-11 94.8 16.4 160 680-866 203-370 (373)
278 PRK14501 putative bifunctional 98.5 2.5E-06 5.4E-11 103.6 16.5 178 681-873 264-468 (726)
279 TIGR00215 lpxB lipid-A-disacch 98.5 8.3E-07 1.8E-11 99.4 11.2 250 579-846 79-366 (385)
280 KOG2471 TPR repeat-containing 98.4 0.0001 2.2E-09 79.0 24.9 154 84-237 208-381 (696)
281 PLN03098 LPA1 LOW PSII ACCUMUL 98.4 8.7E-07 1.9E-11 95.9 9.9 68 387-454 71-141 (453)
282 PF12688 TPR_5: Tetratrico pep 98.4 5E-06 1.1E-10 75.0 13.3 96 358-453 2-103 (120)
283 cd01635 Glycosyltransferase_GT 98.4 5.5E-06 1.2E-10 85.6 15.7 103 684-792 109-212 (229)
284 COG1729 Uncharacterized protei 98.4 5.9E-06 1.3E-10 83.6 13.9 104 360-463 144-253 (262)
285 PF14559 TPR_19: Tetratricopep 98.4 1.1E-06 2.4E-11 71.5 7.1 58 370-427 4-61 (68)
286 PLN03063 alpha,alpha-trehalose 98.3 1.5E-05 3.2E-10 96.6 19.0 181 681-872 278-482 (797)
287 KOG4507 Uncharacterized conser 98.3 9.8E-05 2.1E-09 80.6 22.0 104 364-467 614-718 (886)
288 PF13371 TPR_9: Tetratricopept 98.3 3.2E-06 6.9E-11 69.8 8.7 69 55-123 2-70 (73)
289 KOG0853 Glycosyltransferase [C 98.3 1.4E-05 3E-10 88.3 15.9 182 675-866 266-466 (495)
290 PF13371 TPR_9: Tetratricopept 98.3 3.5E-06 7.7E-11 69.6 8.8 63 399-461 3-65 (73)
291 PF13512 TPR_18: Tetratricopep 98.3 2.2E-05 4.7E-10 71.9 14.1 104 359-462 12-136 (142)
292 KOG1586 Protein required for f 98.2 0.00057 1.2E-08 66.8 23.1 185 62-262 28-232 (288)
293 KOG2796 Uncharacterized conser 98.2 0.00045 9.7E-09 68.5 22.2 148 306-459 166-320 (366)
294 KOG2796 Uncharacterized conser 98.2 0.0011 2.3E-08 65.9 24.7 232 81-390 68-319 (366)
295 TIGR03713 acc_sec_asp1 accesso 98.2 7.3E-06 1.6E-10 94.3 11.3 170 679-862 319-516 (519)
296 KOG1586 Protein required for f 98.2 0.00042 9E-09 67.7 21.3 141 325-466 76-236 (288)
297 COG4700 Uncharacterized protei 98.2 0.00025 5.4E-09 66.7 18.6 148 96-252 70-220 (251)
298 KOG4555 TPR repeat-containing 98.2 4.1E-05 8.9E-10 67.3 12.6 97 361-457 47-147 (175)
299 PLN03098 LPA1 LOW PSII ACCUMUL 98.1 2.8E-05 6.2E-10 84.4 13.6 74 38-111 65-141 (453)
300 KOG3616 Selective LIM binding 98.1 0.0035 7.6E-08 70.4 29.6 47 59-106 455-501 (1636)
301 KOG3616 Selective LIM binding 98.1 0.0024 5.2E-08 71.6 28.0 318 85-458 664-1028(1636)
302 PF13424 TPR_12: Tetratricopep 98.1 4.1E-06 8.9E-11 70.2 4.8 64 391-454 5-75 (78)
303 cd03793 GT1_Glycogen_synthase_ 98.1 1.7E-05 3.6E-10 89.7 10.2 110 755-870 467-589 (590)
304 COG0438 RfaG Glycosyltransfera 98.0 0.00018 4E-09 79.4 18.5 174 683-870 200-379 (381)
305 PF13424 TPR_12: Tetratricopep 98.0 8.4E-06 1.8E-10 68.3 5.7 73 114-186 3-75 (78)
306 PF06552 TOM20_plant: Plant sp 98.0 3.9E-05 8.5E-10 72.4 10.3 100 339-465 7-120 (186)
307 KOG4555 TPR repeat-containing 98.0 0.00025 5.5E-09 62.4 14.5 105 155-259 41-149 (175)
308 KOG1585 Protein required for f 98.0 0.0017 3.7E-08 63.9 21.7 30 157-186 31-60 (308)
309 PF10300 DUF3808: Protein of u 98.0 0.0023 5.1E-08 73.2 26.5 55 54-111 2-63 (468)
310 PF06552 TOM20_plant: Plant sp 98.0 6.1E-05 1.3E-09 71.1 10.8 93 132-224 7-113 (186)
311 KOG1258 mRNA processing protei 97.9 0.058 1.3E-06 60.7 34.5 124 323-446 297-421 (577)
312 KOG0985 Vesicle coat protein c 97.9 0.031 6.7E-07 65.6 32.9 197 61-275 1088-1329(1666)
313 PF10300 DUF3808: Protein of u 97.9 0.003 6.5E-08 72.3 25.4 161 294-454 193-376 (468)
314 PF04184 ST7: ST7 protein; In 97.9 0.0017 3.7E-08 70.9 21.6 208 53-268 173-428 (539)
315 KOG1585 Protein required for f 97.9 0.0014 3.1E-08 64.5 18.9 134 331-482 99-248 (308)
316 PF10345 Cohesin_load: Cohesin 97.9 0.11 2.5E-06 62.0 41.5 414 46-485 57-601 (608)
317 KOG4642 Chaperone-dependent E3 97.9 3.6E-05 7.8E-10 75.2 7.9 100 47-146 9-108 (284)
318 PF10345 Cohesin_load: Cohesin 97.9 0.12 2.7E-06 61.8 38.9 316 98-443 37-467 (608)
319 PLN02670 transferase, transfer 97.8 0.00035 7.6E-09 79.4 16.1 172 681-868 278-466 (472)
320 KOG1550 Extracellular protein 97.8 0.018 4E-07 67.6 30.6 230 192-458 289-542 (552)
321 KOG1550 Extracellular protein 97.8 0.013 2.8E-07 68.8 29.1 176 64-254 228-426 (552)
322 TIGR01426 MGT glycosyltransfer 97.8 0.00097 2.1E-08 75.5 19.3 165 679-865 223-390 (392)
323 PF08631 SPO22: Meiosis protei 97.8 0.021 4.5E-07 60.9 28.0 131 126-256 3-152 (278)
324 KOG1258 mRNA processing protei 97.8 0.11 2.5E-06 58.4 43.2 405 63-481 60-497 (577)
325 TIGR03492 conserved hypothetic 97.8 0.00023 5E-09 79.9 13.4 155 693-862 221-393 (396)
326 PF04184 ST7: ST7 protein; In 97.8 0.0024 5.2E-08 69.7 20.1 104 357-460 259-381 (539)
327 KOG4507 Uncharacterized conser 97.8 0.0035 7.6E-08 69.0 21.2 108 329-436 613-721 (886)
328 PF05843 Suf: Suppressor of fo 97.8 0.00046 1E-08 73.5 14.7 135 325-459 3-141 (280)
329 TIGR02919 accessory Sec system 97.8 0.00067 1.5E-08 76.3 16.5 128 696-840 291-420 (438)
330 COG1819 Glycosyl transferases, 97.8 0.0013 2.8E-08 73.8 18.7 165 678-867 234-401 (406)
331 KOG0545 Aryl-hydrocarbon recep 97.7 0.00047 1E-08 67.7 12.5 74 391-464 230-303 (329)
332 COG5107 RNA14 Pre-mRNA 3'-end 97.7 0.11 2.4E-06 56.0 33.5 407 41-457 35-534 (660)
333 KOG0890 Protein kinase of the 97.7 0.13 2.8E-06 66.5 36.2 397 53-468 1388-1847(2382)
334 KOG0890 Protein kinase of the 97.7 0.038 8.2E-07 71.1 31.6 359 87-465 1388-1795(2382)
335 PF13524 Glyco_trans_1_2: Glyc 97.7 0.00022 4.8E-09 61.8 9.2 86 766-861 2-90 (92)
336 KOG4642 Chaperone-dependent E3 97.7 0.00026 5.7E-09 69.3 10.2 93 328-420 15-107 (284)
337 KOG0545 Aryl-hydrocarbon recep 97.7 0.001 2.2E-08 65.4 13.6 109 44-152 174-300 (329)
338 PF02259 FAT: FAT domain; Int 97.7 0.021 4.6E-07 63.5 26.7 138 320-457 143-341 (352)
339 PF02259 FAT: FAT domain; Int 97.6 0.029 6.3E-07 62.4 27.6 189 55-253 5-212 (352)
340 PLN02992 coniferyl-alcohol glu 97.6 0.00082 1.8E-08 76.5 15.0 139 680-831 262-427 (481)
341 KOG2610 Uncharacterized conser 97.6 0.0048 1E-07 63.5 18.5 166 83-252 104-274 (491)
342 KOG2610 Uncharacterized conser 97.6 0.0014 3E-08 67.3 14.5 154 299-452 113-274 (491)
343 PF13281 DUF4071: Domain of un 97.6 0.015 3.3E-07 62.9 23.1 127 190-338 140-274 (374)
344 PF13428 TPR_14: Tetratricopep 97.6 0.00015 3.2E-09 52.8 5.3 40 393-432 3-42 (44)
345 PHA03392 egt ecdysteroid UDP-g 97.6 0.0018 3.9E-08 75.0 16.9 161 682-865 297-465 (507)
346 COG0707 MurG UDP-N-acetylgluco 97.6 0.0024 5.3E-08 69.8 16.6 243 579-846 81-339 (357)
347 KOG0985 Vesicle coat protein c 97.5 0.36 7.9E-06 57.2 36.2 240 189-445 1102-1374(1666)
348 TIGR02398 gluc_glyc_Psyn gluco 97.5 0.0036 7.9E-08 71.0 17.7 168 681-862 284-477 (487)
349 PF13281 DUF4071: Domain of un 97.5 0.021 4.5E-07 61.9 22.4 179 81-260 140-340 (374)
350 PF13428 TPR_14: Tetratricopep 97.5 0.00025 5.5E-09 51.6 5.3 42 358-399 2-43 (44)
351 PLN03004 UDP-glycosyltransfera 97.5 0.0015 3.3E-08 73.9 14.0 138 680-832 269-425 (451)
352 PLN02764 glycosyltransferase f 97.5 0.0023 4.9E-08 72.3 15.2 181 679-875 255-449 (453)
353 KOG0376 Serine-threonine phosp 97.5 0.00019 4E-09 77.9 6.2 108 48-155 4-111 (476)
354 PF05843 Suf: Suppressor of fo 97.4 0.0025 5.4E-08 67.9 14.8 136 50-189 3-139 (280)
355 PF13431 TPR_17: Tetratricopep 97.4 0.00015 3.2E-09 49.2 3.3 32 414-445 2-33 (34)
356 KOG0376 Serine-threonine phosp 97.4 0.00029 6.3E-09 76.4 7.0 113 160-272 7-119 (476)
357 KOG0551 Hsp90 co-chaperone CNS 97.4 0.0052 1.1E-07 63.5 15.4 101 156-256 80-184 (390)
358 KOG2396 HAT (Half-A-TPR) repea 97.4 0.32 7E-06 53.5 36.1 87 68-154 91-178 (568)
359 PLN02410 UDP-glucoronosyl/UDP- 97.4 0.0045 9.9E-08 70.3 16.7 139 680-832 263-411 (451)
360 PLN02863 UDP-glucoronosyl/UDP- 97.4 0.0036 7.8E-08 71.7 15.8 103 680-792 282-388 (477)
361 COG3118 Thioredoxin domain-con 97.4 0.022 4.8E-07 58.5 19.5 160 83-249 135-296 (304)
362 COG3118 Thioredoxin domain-con 97.4 0.0085 1.8E-07 61.5 16.2 160 47-215 133-296 (304)
363 PF08631 SPO22: Meiosis protei 97.3 0.22 4.7E-06 53.1 28.0 161 93-254 4-186 (278)
364 PF00515 TPR_1: Tetratricopept 97.3 0.00036 7.7E-09 47.5 4.4 33 426-458 2-34 (34)
365 PF13431 TPR_17: Tetratricopep 97.3 0.00022 4.7E-09 48.3 3.2 32 380-411 2-33 (34)
366 PLN03007 UDP-glucosyltransfera 97.3 0.0026 5.6E-08 73.4 14.1 107 680-796 284-396 (482)
367 PLN02167 UDP-glycosyltransfera 97.3 0.0045 9.9E-08 71.2 16.1 139 680-831 279-434 (475)
368 KOG0551 Hsp90 co-chaperone CNS 97.3 0.0018 3.9E-08 66.7 11.1 102 47-148 80-185 (390)
369 PF07719 TPR_2: Tetratricopept 97.3 0.00049 1.1E-08 46.7 5.0 34 425-458 1-34 (34)
370 KOG0530 Protein farnesyltransf 97.3 0.086 1.9E-06 53.0 22.0 206 132-367 59-269 (318)
371 COG2909 MalT ATP-dependent tra 97.3 0.18 3.9E-06 59.4 27.8 209 47-256 414-649 (894)
372 PLN03064 alpha,alpha-trehalose 97.3 0.012 2.6E-07 71.7 19.3 177 681-870 362-564 (934)
373 KOG0530 Protein farnesyltransf 97.3 0.083 1.8E-06 53.1 21.4 201 171-401 57-269 (318)
374 PLN00414 glycosyltransferase f 97.3 0.0041 8.8E-08 70.6 14.4 155 679-845 250-417 (446)
375 COG5107 RNA14 Pre-mRNA 3'-end 97.2 0.46 1E-05 51.5 31.0 372 70-472 30-479 (660)
376 PLN02210 UDP-glucosyl transfer 97.2 0.0064 1.4E-07 69.4 15.4 139 680-832 268-416 (456)
377 PLN02208 glycosyltransferase f 97.2 0.0054 1.2E-07 69.6 14.7 151 680-845 250-416 (442)
378 PLN00164 glucosyltransferase; 97.2 0.0041 8.9E-08 71.5 13.8 139 681-832 272-432 (480)
379 cd03784 GT1_Gtf_like This fami 97.2 0.011 2.4E-07 67.2 17.3 141 680-842 238-382 (401)
380 PLN02207 UDP-glycosyltransfera 97.2 0.0093 2E-07 67.9 16.2 106 680-796 274-383 (468)
381 PF00201 UDPGT: UDP-glucoronos 97.2 0.0019 4E-08 75.8 10.9 161 680-864 275-441 (500)
382 COG0790 FOG: TPR repeat, SEL1 97.2 0.099 2.2E-06 56.4 23.5 128 305-439 93-236 (292)
383 PLN02554 UDP-glycosyltransfera 97.2 0.0091 2E-07 68.9 16.2 119 680-811 273-406 (481)
384 COG0297 GlgA Glycogen synthase 97.2 0.013 2.8E-07 66.4 16.8 164 681-870 293-480 (487)
385 PLN02562 UDP-glycosyltransfera 97.1 0.0085 1.8E-07 68.3 15.6 142 681-837 273-419 (448)
386 PLN02173 UDP-glucosyl transfer 97.1 0.0047 1E-07 69.9 13.3 146 680-842 263-418 (449)
387 PLN02448 UDP-glycosyltransfera 97.1 0.0082 1.8E-07 68.9 15.1 133 680-832 273-416 (459)
388 COG2976 Uncharacterized protei 97.1 0.029 6.3E-07 54.0 15.4 117 341-458 70-192 (207)
389 PF03704 BTAD: Bacterial trans 97.0 0.017 3.8E-07 54.9 14.1 113 329-453 12-124 (146)
390 PLN03015 UDP-glucosyl transfer 97.0 0.009 1.9E-07 67.8 13.8 103 680-792 266-380 (470)
391 PRK13184 pknD serine/threonine 97.0 0.32 6.9E-06 59.6 27.6 134 54-190 481-624 (932)
392 PF13528 Glyco_trans_1_3: Glyc 97.0 0.0077 1.7E-07 66.0 12.9 110 680-815 191-301 (318)
393 PF00515 TPR_1: Tetratricopept 97.0 0.0017 3.6E-08 44.1 4.7 31 393-423 3-33 (34)
394 TIGR03590 PseG pseudaminic aci 96.9 0.0056 1.2E-07 65.3 10.9 86 690-792 181-267 (279)
395 KOG1308 Hsp70-interacting prot 96.9 0.00096 2.1E-08 69.1 4.7 97 52-148 118-214 (377)
396 PLN02555 limonoid glucosyltran 96.9 0.015 3.2E-07 66.6 14.8 153 681-844 277-441 (480)
397 COG2909 MalT ATP-dependent tra 96.9 1.5 3.2E-05 52.1 38.3 187 48-240 347-552 (894)
398 PF07719 TPR_2: Tetratricopept 96.9 0.0023 5E-08 43.3 5.1 31 393-423 3-33 (34)
399 PF03704 BTAD: Bacterial trans 96.9 0.022 4.8E-07 54.1 13.8 95 50-144 8-124 (146)
400 PLN02152 indole-3-acetate beta 96.8 0.02 4.4E-07 65.0 15.0 143 680-832 260-418 (455)
401 PF02350 Epimerase_2: UDP-N-ac 96.8 0.013 2.8E-07 64.5 12.8 134 679-832 178-319 (346)
402 COG0790 FOG: TPR repeat, SEL1 96.8 0.59 1.3E-05 50.3 25.7 61 340-405 172-236 (292)
403 PLN02534 UDP-glycosyltransfera 96.8 0.018 3.9E-07 66.0 13.9 106 680-793 282-390 (491)
404 PF08424 NRDE-2: NRDE-2, neces 96.8 0.096 2.1E-06 57.0 18.9 150 310-459 6-188 (321)
405 KOG1308 Hsp70-interacting prot 96.7 0.0014 3E-08 68.0 4.1 91 368-458 125-215 (377)
406 PF13181 TPR_8: Tetratricopept 96.7 0.0024 5.2E-08 43.3 4.1 32 426-457 2-33 (34)
407 COG2976 Uncharacterized protei 96.7 0.074 1.6E-06 51.3 15.2 150 54-224 37-192 (207)
408 PRK09814 beta-1,6-galactofuran 96.7 0.0084 1.8E-07 66.0 10.4 113 709-845 188-312 (333)
409 KOG2041 WD40 repeat protein [G 96.7 0.98 2.1E-05 51.5 25.7 127 115-251 691-822 (1189)
410 PRK12446 undecaprenyldiphospho 96.7 0.026 5.6E-07 62.4 14.1 78 755-836 245-330 (352)
411 KOG2396 HAT (Half-A-TPR) repea 96.6 1.5 3.3E-05 48.5 36.1 75 47-121 104-179 (568)
412 PF07079 DUF1347: Protein of u 96.6 1.6 3.4E-05 47.8 36.9 375 51-451 48-521 (549)
413 PF04910 Tcf25: Transcriptiona 96.6 0.17 3.6E-06 55.8 19.3 142 316-457 33-225 (360)
414 KOG0128 RNA-binding protein SA 96.5 2.5 5.4E-05 49.7 34.1 159 62-221 93-261 (881)
415 PF08424 NRDE-2: NRDE-2, neces 96.5 0.15 3.2E-06 55.5 18.3 114 69-186 6-131 (321)
416 PF02684 LpxB: Lipid-A-disacch 96.5 0.022 4.8E-07 62.5 11.7 139 692-843 199-352 (373)
417 PRK11619 lytic murein transgly 96.4 3.5 7.5E-05 49.3 34.3 123 330-453 248-374 (644)
418 KOG2041 WD40 repeat protein [G 96.3 2.8 6E-05 48.1 26.1 173 56-250 671-877 (1189)
419 KOG3824 Huntingtin interacting 96.3 0.014 2.9E-07 59.5 7.8 67 401-467 126-192 (472)
420 PRK13184 pknD serine/threonine 96.3 2.6 5.6E-05 52.0 28.5 102 47-149 511-624 (932)
421 PF04910 Tcf25: Transcriptiona 96.3 0.2 4.3E-06 55.2 17.6 84 183-266 32-145 (360)
422 KOG3783 Uncharacterized conser 96.1 1.2 2.6E-05 49.9 22.3 298 125-458 199-524 (546)
423 PF04781 DUF627: Protein of un 96.1 0.035 7.5E-07 48.5 8.2 92 54-145 2-107 (111)
424 PF06258 Mito_fiss_Elm1: Mitoc 96.1 0.072 1.6E-06 57.3 12.6 202 585-800 53-264 (311)
425 PF13174 TPR_6: Tetratricopept 96.0 0.011 2.4E-07 39.6 4.1 31 427-457 2-32 (33)
426 PF13176 TPR_7: Tetratricopept 96.0 0.0058 1.2E-07 42.1 2.7 27 428-454 2-28 (36)
427 COG4370 Uncharacterized protei 96.0 0.0023 4.9E-08 64.9 0.9 149 699-869 260-411 (412)
428 TIGR00661 MJ1255 conserved hyp 96.0 0.053 1.2E-06 59.3 11.7 73 741-818 228-301 (321)
429 PF13181 TPR_8: Tetratricopept 95.9 0.014 3E-07 39.4 4.3 30 393-422 3-32 (34)
430 KOG3824 Huntingtin interacting 95.9 0.025 5.5E-07 57.6 7.7 73 51-123 119-191 (472)
431 TIGR03568 NeuC_NnaA UDP-N-acet 95.8 0.21 4.7E-06 55.5 15.4 90 725-832 249-339 (365)
432 PF05693 Glycogen_syn: Glycoge 95.8 0.021 4.6E-07 64.8 7.3 109 755-873 462-587 (633)
433 TIGR02094 more_P_ylases alpha- 95.8 0.31 6.6E-06 57.5 17.1 173 681-865 388-598 (601)
434 PRK02797 4-alpha-L-fucosyltran 95.8 0.31 6.8E-06 51.0 15.0 170 680-867 144-316 (322)
435 KOG0128 RNA-binding protein SA 95.7 6.2 0.00013 46.6 36.1 224 42-267 107-354 (881)
436 KOG3783 Uncharacterized conser 95.6 1.7 3.6E-05 48.8 20.7 80 103-187 254-333 (546)
437 PRK15180 Vi polysaccharide bio 95.6 0.049 1.1E-06 58.9 8.7 142 335-476 301-442 (831)
438 COG1519 KdtA 3-deoxy-D-manno-o 95.5 0.72 1.6E-05 50.4 17.2 154 681-847 232-402 (419)
439 PF09613 HrpB1_HrpK: Bacterial 95.4 0.25 5.3E-06 46.6 11.7 100 47-147 9-108 (160)
440 PF13174 TPR_6: Tetratricopept 95.4 0.03 6.5E-07 37.4 4.3 31 393-423 2-32 (33)
441 COG3914 Spy Predicted O-linked 95.2 0.58 1.3E-05 52.7 15.5 132 337-468 45-185 (620)
442 PRK01021 lpxB lipid-A-disaccha 95.2 0.21 4.6E-06 57.6 12.6 139 692-846 428-586 (608)
443 KOG1538 Uncharacterized conser 95.0 2.8 6E-05 47.7 19.9 48 56-108 564-611 (1081)
444 PF13176 TPR_7: Tetratricopept 95.0 0.048 1E-06 37.5 4.3 23 360-382 2-24 (36)
445 KOG1464 COP9 signalosome, subu 95.0 1.7 3.7E-05 44.0 16.6 93 328-420 150-260 (440)
446 PF14561 TPR_20: Tetratricopep 95.0 0.21 4.5E-06 42.7 9.1 48 411-458 8-55 (90)
447 KOG1192 UDP-glucuronosyl and U 94.9 0.22 4.8E-06 58.3 12.7 147 682-842 278-433 (496)
448 PF09613 HrpB1_HrpK: Bacterial 94.9 0.41 8.9E-06 45.2 11.6 97 359-456 12-108 (160)
449 PF14853 Fis1_TPR_C: Fis1 C-te 94.9 0.058 1.3E-06 40.6 4.9 37 427-463 3-39 (53)
450 PF14561 TPR_20: Tetratricopep 94.9 0.22 4.8E-06 42.5 9.1 75 376-450 7-83 (90)
451 KOG1538 Uncharacterized conser 94.9 1.3 2.9E-05 50.1 17.2 212 194-417 588-830 (1081)
452 COG4649 Uncharacterized protei 94.8 3.8 8.3E-05 38.9 17.3 147 48-201 58-210 (221)
453 cd04299 GT1_Glycogen_Phosphory 94.8 0.72 1.6E-05 55.7 16.2 108 681-792 477-599 (778)
454 PF09986 DUF2225: Uncharacteri 94.7 0.32 6.8E-06 49.2 11.2 92 129-220 90-194 (214)
455 PRK10941 hypothetical protein; 94.7 0.34 7.3E-06 50.8 11.7 70 360-429 184-253 (269)
456 PF12968 DUF3856: Domain of Un 94.6 1.1 2.5E-05 39.4 12.5 86 369-454 21-129 (144)
457 PRK10941 hypothetical protein; 94.6 0.43 9.4E-06 50.0 12.1 71 194-264 184-254 (269)
458 COG4976 Predicted methyltransf 94.5 0.057 1.2E-06 53.0 5.1 67 399-465 3-69 (287)
459 KOG2941 Beta-1,4-mannosyltrans 94.5 0.38 8.3E-06 50.4 11.2 124 709-845 291-423 (444)
460 PF14853 Fis1_TPR_C: Fis1 C-te 94.4 0.24 5.3E-06 37.2 7.1 38 393-430 3-40 (53)
461 smart00028 TPR Tetratricopepti 94.3 0.063 1.4E-06 35.0 3.8 32 426-457 2-33 (34)
462 KOG1839 Uncharacterized protei 94.3 0.74 1.6E-05 56.8 14.9 168 46-217 930-1125(1236)
463 COG4649 Uncharacterized protei 94.3 3.4 7.3E-05 39.3 15.8 132 333-465 68-206 (221)
464 KOG1463 26S proteasome regulat 94.3 8.6 0.00019 40.7 23.7 205 50-255 6-239 (411)
465 PF04781 DUF627: Protein of un 94.1 0.71 1.5E-05 40.5 10.4 28 232-259 3-30 (111)
466 PRK15180 Vi polysaccharide bio 94.1 12 0.00025 41.4 32.8 137 47-190 288-424 (831)
467 KOG1464 COP9 signalosome, subu 94.0 3.9 8.4E-05 41.6 16.6 261 129-457 40-331 (440)
468 PF09986 DUF2225: Uncharacteri 93.9 0.34 7.3E-06 49.0 9.4 67 392-458 119-198 (214)
469 PF12968 DUF3856: Domain of Un 93.7 1.4 3.1E-05 38.8 11.3 95 51-145 12-129 (144)
470 COG0763 LpxB Lipid A disacchar 93.7 0.45 9.8E-06 51.3 10.3 139 692-843 203-356 (381)
471 PF05159 Capsule_synth: Capsul 93.5 0.1 2.2E-06 55.4 5.3 86 694-791 138-224 (269)
472 KOG1463 26S proteasome regulat 93.5 12 0.00025 39.7 24.3 166 86-253 8-196 (411)
473 KOG1839 Uncharacterized protei 93.4 0.45 9.6E-06 58.7 10.9 154 301-454 944-1128(1236)
474 KOG3364 Membrane protein invol 93.4 0.61 1.3E-05 42.2 8.8 74 390-463 31-109 (149)
475 TIGR02561 HrpB1_HrpK type III 93.4 1 2.2E-05 41.8 10.5 86 48-133 10-95 (153)
476 cd03789 GT1_LPS_heptosyltransf 93.3 1.1 2.3E-05 47.9 12.8 97 694-801 137-233 (279)
477 KOG4814 Uncharacterized conser 93.2 11 0.00024 43.2 20.0 101 119-220 357-457 (872)
478 PF01075 Glyco_transf_9: Glyco 93.0 0.28 6.2E-06 51.3 7.7 205 580-801 3-218 (247)
479 PF04101 Glyco_tran_28_C: Glyc 92.9 0.14 3E-06 49.9 4.8 92 742-840 55-153 (167)
480 PF10602 RPN7: 26S proteasome 92.9 1.3 2.7E-05 43.5 11.3 103 82-185 36-141 (177)
481 TIGR02561 HrpB1_HrpK type III 92.8 1.4 3E-05 41.0 10.5 72 370-441 23-94 (153)
482 COG5159 RPN6 26S proteasome re 92.8 13 0.00028 38.3 26.5 173 52-253 7-193 (421)
483 KOG1310 WD40 repeat protein [G 92.7 0.3 6.5E-06 53.8 7.2 87 371-457 388-477 (758)
484 KOG1310 WD40 repeat protein [G 92.6 0.43 9.2E-06 52.7 8.1 107 43-149 369-478 (758)
485 smart00028 TPR Tetratricopepti 92.6 0.18 4E-06 32.6 3.7 29 394-422 4-32 (34)
486 PF04190 DUF410: Protein of un 92.6 9.3 0.0002 40.1 18.1 27 321-347 88-114 (260)
487 PF04007 DUF354: Protein of un 92.5 11 0.00023 41.1 18.9 61 755-823 241-302 (335)
488 KOG3364 Membrane protein invol 92.5 1.1 2.4E-05 40.6 9.1 73 47-119 31-108 (149)
489 COG1747 Uncharacterized N-term 92.4 22 0.00048 39.9 22.3 208 42-258 60-292 (711)
490 KOG2422 Uncharacterized conser 92.3 8.9 0.00019 43.5 17.9 49 205-253 252-312 (665)
491 KOG2422 Uncharacterized conser 92.1 12 0.00026 42.5 18.5 102 60-161 250-388 (665)
492 COG4976 Predicted methyltransf 92.0 0.25 5.4E-06 48.8 5.0 61 91-151 4-64 (287)
493 PF10602 RPN7: 26S proteasome 92.0 1.8 3.8E-05 42.5 11.1 62 324-385 37-101 (177)
494 KOG3807 Predicted membrane pro 92.0 18 0.0004 38.0 18.9 145 86-249 188-335 (556)
495 KOG4814 Uncharacterized conser 91.7 30 0.00065 39.9 31.0 97 50-146 356-458 (872)
496 PF04190 DUF410: Protein of un 91.6 20 0.00043 37.7 19.7 35 220-254 135-170 (260)
497 PRK11619 lytic murein transgly 91.5 38 0.00083 40.7 37.6 139 299-450 322-464 (644)
498 KOG3807 Predicted membrane pro 91.2 20 0.00044 37.6 17.8 58 52-111 188-245 (556)
499 PRK14089 ipid-A-disaccharide s 91.2 1 2.2E-05 49.3 9.4 77 693-790 183-259 (347)
500 KOG2063 Vacuolar assembly/sort 91.0 47 0.001 40.8 25.8 59 51-109 310-373 (877)
No 1
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-159 Score=1252.32 Aligned_cols=838 Identities=40% Similarity=0.586 Sum_probs=790.3
Q ss_pred CCCCCCCCccCCCccCCCCCCCCCCCCCccccCCCCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 002273 9 SNGRERDPVQDNGFLKGPQSLPGTSGSPVAVGSTLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGK 88 (944)
Q Consensus 9 ~~~~g~~~~a~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 88 (944)
....++.....+.|.+..+......... ......+.-++.+-.+|+++..+|++++|+.+|+.++++.|++.++|.++
T Consensus 79 ~t~~~~llll~ai~~q~~r~d~s~a~~~--~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inl 156 (966)
T KOG4626|consen 79 PTNTERLLLLSAIFFQGSRLDKSSAGSL--LAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINL 156 (966)
T ss_pred CCcccceeeehhhhhcccchhhhhhhhh--hhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhH
Confidence 3446677777788887776554443322 22234455677888899999999999999999999999999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHH
Q 002273 89 GICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLK 168 (944)
Q Consensus 89 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~ 168 (944)
|.++...|+.+.|.++|.++++++|+...+...+|.++..+|+..+|..+|.++++..|... .+|.++|..+.
T Consensus 157 a~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fA-------iawsnLg~~f~ 229 (966)
T KOG4626|consen 157 AAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFA-------IAWSNLGCVFN 229 (966)
T ss_pred HHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCcee-------eeehhcchHHh
Confidence 99999999999999999999999999999999999999999999999999999999999754 45889999999
Q ss_pred HcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002273 169 LAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACY 248 (944)
Q Consensus 169 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 248 (944)
.+|+...|+..|+++++++|+..++|++||.+|...+.+++|+.+|.+++...|+++.++.++|.+|+.+|..+-|+..|
T Consensus 230 ~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Y 309 (966)
T KOG4626|consen 230 AQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTY 309 (966)
T ss_pred hcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 002273 249 ERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYN 328 (944)
Q Consensus 249 ~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 328 (944)
+++++..|+.++++.+++.++.+.|.. .+|..+|.+++.+.|.++++.++
T Consensus 310 kral~~~P~F~~Ay~NlanALkd~G~V------------------------------~ea~~cYnkaL~l~p~hadam~N 359 (966)
T KOG4626|consen 310 KRALELQPNFPDAYNNLANALKDKGSV------------------------------TEAVDCYNKALRLCPNHADAMNN 359 (966)
T ss_pred HHHHhcCCCchHHHhHHHHHHHhccch------------------------------HHHHHHHHHHHHhCCccHHHHHH
Confidence 999999999999999999998776655 99999999999999999999999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 002273 329 LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMD 408 (944)
Q Consensus 329 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 408 (944)
||.+|.++|++++|..+|.++++..|+.+.++.+||.+|.++|++++|+.+|++++.+.|..++++.++|..|..+|+.+
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~ 439 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVS 439 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhhHHHHhhhccCCCh-----HHHHHH
Q 002273 409 AAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHD-----DKLFEA 483 (944)
Q Consensus 409 ~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~-----~~~~~~ 483 (944)
.|+++|.++++.+|..++++.+||.+|...|+..+|++.|+.+|+++||.++++.|++.++.++.+|.+ +++.+.
T Consensus 440 ~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~~~~kl~si 519 (966)
T KOG4626|consen 440 AAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDKRMKKLVSI 519 (966)
T ss_pred HHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999988 788888
Q ss_pred HHHHH--HHHhhhc----------------------------------cCCCCCCCCCCCCCCcEEEeecCCCccCcHHH
Q 002273 484 HRDWG--KRFMRLY----------------------------------SQYTSWDNTKDPERPLVIGYVSPDYFTHSVSY 527 (944)
Q Consensus 484 ~~~~~--~~~~~~~----------------------------------~~~~~~~~~~~~~~~lriGy~S~d~~~h~v~~ 527 (944)
+++|. .++.+.. +++..|++-+.+++||||||||+||.+||+++
T Consensus 520 vrdql~~~rlpsvhP~hsm~ypl~~~~~~aia~k~a~~c~~~~~~~~k~pyth~~~l~~~~~rlrIGYvSsDFgnHp~Sh 599 (966)
T KOG4626|consen 520 VRDQLEKNRLPSVHPHHSMLYPLSHILRKAIAAKHANLCLDKVHVLGKPPYTHPDNLKVKEGRLRIGYVSSDFGNHPTSH 599 (966)
T ss_pred HHHHHhhhcCCccCcccccccccchHHHHHHHHHHhhhhHHHHHhccCCCCCChhhCCCCcCceEEEeecccccCCchHH
Confidence 88887 3433322 34667788888899999999999999999999
Q ss_pred HHHhhhhhccCCcEEEEEEeccccCChhhHHHHHHHhhhCCceEeccCCCHHHHHHHhHhCCccEEEecCCCCCCCchhh
Q 002273 528 FIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGM 607 (944)
Q Consensus 528 ~~~~~l~~~d~~~fev~~y~~~~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~d~idilvdl~g~t~~~~~~~ 607 (944)
||+.++.+||+++||||||+.+++++. .||.++.++++||+|+++++...+|.+|++|+|||||.|.|||.|+|.++
T Consensus 600 lmqsv~gmHdr~kveVfcYals~~d~t---~fR~kv~~e~ehf~Dls~i~~~kiA~~I~qD~I~ILvnlnGyTkgarnei 676 (966)
T KOG4626|consen 600 LMQSVPGMHDRSKVEVFCYALSVNDGT---NFRDKVMKEAEHFVDLSQIPCNKIADKIRQDKIHILVNLNGYTKGARNEI 676 (966)
T ss_pred HhccCcCcCCccceEEEEEEeecCCCc---hHHHHHHhhccceeehhcCChHHHHHHHhhcCceEEEeccccccccccce
Confidence 999999999999999999999876543 39999999999999999999999999999999999999999999999999
Q ss_pred hccCCcceeeecccCCCCCCCCCccEEEecCCCCCcccccccccceEEcCCCccccCCCC--------CCCCCCCCCCCC
Q 002273 608 MACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSP--------EAGPVCPTPALT 679 (944)
Q Consensus 608 ~a~r~ApvQ~~~~G~p~t~g~~~~Dy~i~d~~~~p~~~~~~~~e~~~~lp~~~~~~~~~~--------~~~~~~~~~~~~ 679 (944)
||+|||||||+|+|||+|||.++|||+|||.++.|++....|+|||++||+||+|+++.+ ...|.++.++++
T Consensus 677 fAlrPAPIQv~wlGyPgTtGa~~mDYiITDs~tsPl~~a~~ysEkLv~lPh~ffi~d~~qk~~~~~dpn~kP~r~~y~Lp 756 (966)
T KOG4626|consen 677 FALRPAPIQVMWLGYPGTTGATFMDYIITDSVTSPLELAQQYSEKLVYLPHCFFIGDHKQKNQDVLDPNNKPTRSQYGLP 756 (966)
T ss_pred eeccCCceeEEeecCCCCCCCceeeEEeecccCChHHHHHHHHHHHhhCCceEEecCcccccccccCCCCCCCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999876 667889999999
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHh
Q 002273 680 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 759 (944)
Q Consensus 680 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~ 759 (944)
+|.|||||||+++||+|.++++|++||++||||+||+++.|+.++ ++++..++++|++++||+|.+-.. .++|+++
T Consensus 757 ~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~ge---~rf~ty~~~~Gl~p~riifs~va~-k~eHvrr 832 (966)
T KOG4626|consen 757 EDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVGE---QRFRTYAEQLGLEPDRIIFSPVAA-KEEHVRR 832 (966)
T ss_pred CCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccch---HHHHHHHHHhCCCccceeeccccc-hHHHHHh
Confidence 999999999999999999999999999999999999999998665 889999999999999999999877 5999999
Q ss_pred cccccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhcCHHHHHHHH
Q 002273 760 YSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLR 839 (944)
Q Consensus 760 ~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~l~~d~~~~~~~r 839 (944)
+.++||+|||++|+|+||++|.||||||+|||||+++++||++|+|.++|++++|+++.+||+++||+|++|.+.|+++|
T Consensus 833 ~~LaDv~LDTplcnGhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hliak~~eEY~~iaV~Latd~~~L~~lr 912 (966)
T KOG4626|consen 833 GQLADVCLDTPLCNGHTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGHLIAKNREEYVQIAVRLATDKEYLKKLR 912 (966)
T ss_pred hhhhhhcccCcCcCCcccchhhhccCCceeecccHHHHHHHHHHHHHHcccHHHHhhhHHHHHHHHHHhhcCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHhcCCCCCchhhhhhhhcccc
Q 002273 840 MSLRDLMSKSPVCDGQNFALGLESTYRNMWHRYCKGDVPSLKRMEMLQQQVVS 892 (944)
Q Consensus 840 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 892 (944)
.++|..+..||+||..+|+..||++|.+||.+||.|++|.++|++.+|+...+
T Consensus 913 ~~l~~~r~~splfd~~q~~~~LE~~y~~MW~~y~~G~~p~h~~me~~~e~~hd 965 (966)
T KOG4626|consen 913 AKLRKARASSPLFDTKQYAKGLERLYLQMWKKYCSGEVPDHRRMENLQEEPHD 965 (966)
T ss_pred HHHHHHhcCCCccCchHHHHHHHHHHHHHHHHhccCCCCchHHHhccccCcCC
Confidence 99999999999999999999999999999999999999999999998876543
No 2
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.9e-104 Score=836.53 Aligned_cols=547 Identities=30% Similarity=0.486 Sum_probs=462.5
Q ss_pred HHHHHHHHHHHhCCCCHHHHHH--HHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH-H
Q 002273 307 QGVAYYKKALYYNWHYADAMYN--LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM-A 383 (944)
Q Consensus 307 ~A~~~~~~al~~~p~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~-a 383 (944)
-++..+...+..++.++..+.. +...+...+....+.......+..+|++..+..+++......|....+...+.. +
T Consensus 49 ~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a 128 (620)
T COG3914 49 LAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIA 128 (620)
T ss_pred HHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3555555555667777765433 467777788888889999999999999999999999988887776666655555 7
Q ss_pred HhhCCCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002273 384 LSIKPNFSQSLNNL------GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 457 (944)
Q Consensus 384 l~~~p~~~~~~~~l------a~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~ 457 (944)
....|++......+ +.....+|+..++...++++.+..|.++.+...+.........+. ...|.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~cs~~----------~~~~t 198 (620)
T COG3914 129 EWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTARQEQCSWP----------EEAPT 198 (620)
T ss_pred HhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhccch----------hccch
Confidence 88888887755555 888888899999999999999999998776666555533333332 23333
Q ss_pred ChhhhhhHHHH-----hhhccCCChHHHHHHHHHHHHHHhhhc---cCCCCCC-CCCCCCCCcEEEeecCCCccCcHHHH
Q 002273 458 SRNAGQNRLLA-----MNYINEGHDDKLFEAHRDWGKRFMRLY---SQYTSWD-NTKDPERPLVIGYVSPDYFTHSVSYF 528 (944)
Q Consensus 458 ~~~a~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~lriGy~S~d~~~h~v~~~ 528 (944)
+.....+..+. +.|+.+ ++..-.....+..+.+.... .+++.|+ +.+..++|+||||+|+|++.|+|+|+
T Consensus 199 nl~~~~~~~~~~~~~~~~~~~d-~p~~~l~~~~q~~~i~~~~~~~~~~~~~~~~~~~~~~~rlRvGylS~dlr~Havg~l 277 (620)
T COG3914 199 NLLSQLALFLGIYGFSLAYLAD-DPLKNLAIANQLLKILSQNAPELVRFPIRDENIKRNGKRLRVGYLSSDLRSHAVGFL 277 (620)
T ss_pred HHHHHHHHHhhccccchhhhcc-chhhhHHHHHHHHHHhcccCCCccccccchhhccccccceeEEEeccccccchHHHH
Confidence 33222222211 222222 23333444455555554322 2344454 23345789999999999999999999
Q ss_pred HHhhhhhccCCcEEEEEEecc-ccCChhhHHHHHHHhhhCCceEeccCCCHHHHHHHhHhCCccEEEecCCCCCCCchhh
Q 002273 529 IEAPLVYHDYQNYKVVVYSAV-VKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGM 607 (944)
Q Consensus 529 ~~~~l~~~d~~~fev~~y~~~-~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~d~idilvdl~g~t~~~~~~~ 607 (944)
+.+++++|||++|||++|+.+ +..|+.+.|++..+ .+|.++.+|++.++|++|+.|+||||||++|||..+|..|
T Consensus 278 ~~~v~e~hDRdkfEvfay~~g~~~~dal~~rI~a~~----~~~~~~~~~dd~e~a~~I~~d~IdILvDl~g~T~d~r~~v 353 (620)
T COG3914 278 LRWVFEYHDRDKFEVFAYSLGPPHTDALQERISAAV----EKWYPIGRMDDAEIANAIRTDGIDILVDLDGHTVDTRCQV 353 (620)
T ss_pred HHHHHHHhchhheEEEEEecCCCCchhHHHHHHHhh----hheeccCCcCHHHHHHHHHhcCCeEEEeccCceeccchhh
Confidence 999999999999999999998 56688888888877 5799999999999999999999999999999999999999
Q ss_pred hccCCcceeeecccCCCCCCCCCccEEEecCCCCCcccccccccceEEcCCCccccCCCCCCCCCC-----CCCCCCCCC
Q 002273 608 MACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVC-----PTPALTNGF 682 (944)
Q Consensus 608 ~a~r~ApvQ~~~~G~p~t~g~~~~Dy~i~d~~~~p~~~~~~~~e~~~~lp~~~~~~~~~~~~~~~~-----~~~~~~~~~ 682 (944)
||+|||||||||+|||+|||+|.|||||+|+++.||+++.+|+|+|+||| .||.|.+...++. ..++++++.
T Consensus 354 ~A~RpAPiqvswlGy~aT~g~p~~DY~I~D~y~vPp~ae~yysEkl~RLp---~cy~p~d~~~~v~p~~sR~~lglp~~a 430 (620)
T COG3914 354 FAHRPAPIQVSWLGYPATTGSPNMDYFISDPYTVPPTAEEYYSEKLWRLP---QCYQPVDGFEPVTPPPSRAQLGLPEDA 430 (620)
T ss_pred hhcCCCceEEeecccccccCCCcceEEeeCceecCchHHHHHHHHHHhcc---cccCCCCCcccCCCCcchhhcCCCCCe
Confidence 99999999999999999999999999999999999999999999999999 4677766544443 448999999
Q ss_pred eEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhccc
Q 002273 683 ITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSL 762 (944)
Q Consensus 683 ~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~ 762 (944)
+||||||+.+|++|+++++|++||++||||+|||+++| +++.++.+++..++++||+.+|++|+|..+ .++|+++|..
T Consensus 431 vVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~-~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~-~~~h~a~~~i 508 (620)
T COG3914 431 VVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGG-DDAEINARLRDLAEREGVDSERLRFLPPAP-NEDHRARYGI 508 (620)
T ss_pred EEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCC-CcHHHHHHHHHHHHHcCCChhheeecCCCC-CHHHHHhhch
Confidence 99999999999999999999999999999999999876 678999999999999999999999999998 5799999999
Q ss_pred ccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002273 763 MDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSL 842 (944)
Q Consensus 763 ~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~l~~d~~~~~~~r~~~ 842 (944)
+||+||||||+||||++|||||||||||+.|++|+||+|+||++++|++|+||.|+++||++||++++|.+.+++.|..+
T Consensus 509 ADlvLDTyPY~g~TTa~daLwm~vPVlT~~G~~FasR~~~si~~~agi~e~vA~s~~dYV~~av~~g~dral~q~~r~~l 588 (620)
T COG3914 509 ADLVLDTYPYGGHTTASDALWMGVPVLTRVGEQFASRNGASIATNAGIPELVADSRADYVEKAVAFGSDRALRQQVRAEL 588 (620)
T ss_pred hheeeecccCCCccchHHHHHhcCceeeeccHHHHHhhhHHHHHhcCCchhhcCCHHHHHHHHHHhcccHHHHHhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCChHHHHHHHHHHHHHHHHHHh
Q 002273 843 RDLMSKSPVCDGQNFALGLESTYRNMWHRYC 873 (944)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 873 (944)
++.+.+|||||++.|++.||.+|.+||.+|.
T Consensus 589 ~~~r~tspL~d~~~far~le~~y~~M~~~y~ 619 (620)
T COG3914 589 KRSRQTSPLFDPKAFARKLETLYWGMWSEYI 619 (620)
T ss_pred HhccccCcccCHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999875
No 3
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=100.00 E-value=2.1e-96 Score=797.17 Aligned_cols=351 Identities=45% Similarity=0.752 Sum_probs=284.7
Q ss_pred cEEEeecCCCccCcHHHHHHhhhhhccCCcEEEEEEeccccCC-hhhHHHHHHHhhhCCceEeccCCC-HHHHHHHhHhC
Q 002273 511 LVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKAD-AKTIRFREKVMKKGGIWRDIYGID-EKKVAAMVRED 588 (944)
Q Consensus 511 lriGy~S~d~~~h~v~~~~~~~l~~~d~~~fev~~y~~~~~~d-~~t~~~~~~~~~~~~~~~~~~~~~-~~~~a~~i~~d 588 (944)
|||||||+||++|||++|+.+++++||+++|||+||+.++.++ ..+.+++ ..+++|+++.+++ +.++|++|++|
T Consensus 1 LRIGyvS~Df~~Hpv~~l~~~ll~~hDr~rfev~~Ys~~~~d~~~~~~~~~----~~~~~~~dl~~~~~~~~~A~~Ir~D 76 (468)
T PF13844_consen 1 LRIGYVSSDFRNHPVGHLLQPLLENHDRSRFEVFCYSLGPDDGDTFRQRIR----AEADHFVDLSGLSDDAEAAQRIRAD 76 (468)
T ss_dssp EEEEEEES-SSSSHHHHHHHHHHHHHHHHTEEEEEEESS---SCHHHHHHH----HHSEEEEEEEE-TTSHHHHHHHHHT
T ss_pred CEEEEECCcchhCHHHHHHHHHHHhcCcccEEEEEEECCCCCCcHHHHHHH----HhCCeEEECccCCcHHHHHHHHHHC
Confidence 7999999999999999999999999999999999999886433 3444444 4468999999987 68999999999
Q ss_pred CccEEEecCCCCCCCchhhhccCCcceeeecccCCCCCCCCCccEEEecCCCCCcccccccccceEEcCCCccccCCC--
Q 002273 589 KIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPS-- 666 (944)
Q Consensus 589 ~idilvdl~g~t~~~~~~~~a~r~ApvQ~~~~G~p~t~g~~~~Dy~i~d~~~~p~~~~~~~~e~~~~lp~~~~~~~~~-- 666 (944)
+|||||||+|||.++|+.|||+|||||||+|||||+|||+++|||+|+|++++|++.+.+|+|||+|||++|+|+++.
T Consensus 77 ~IDILVDL~GhT~~~R~~ifA~RpAPVQvswlGyp~TtG~~~mDY~ItD~~~~P~~~~~~ysEkLirLP~sy~~~d~~~~ 156 (468)
T PF13844_consen 77 GIDILVDLSGHTAGNRLEIFALRPAPVQVSWLGYPGTTGLPAMDYIITDPVTDPPEAEEHYSEKLIRLPHSYFCNDHRQM 156 (468)
T ss_dssp T-SEEEESSTSSTSSSHHHHHT-SSSEEEEESSSSS---STT--EEEEETTTS-GGGGGG-SSEEEEESS-S----HHHH
T ss_pred CCCEEEeCCCcCCCCHhHHHhcCCcceEEEecCCCcccCCcccCEEEECCCcCCcccccCCccceEEccCceEECChHHh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999995311
Q ss_pred --------------------------------------------------------------------------------
Q 002273 667 -------------------------------------------------------------------------------- 666 (944)
Q Consensus 667 -------------------------------------------------------------------------------- 666 (944)
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (468)
T PF13844_consen 157 FPHLKERIVLEEKDDSRVVDNVAVINATDLSPLLEKTEVKDTVRENIVLSGDGKDATSTEVELPVLEQPTTTPIEQMIAS 236 (468)
T ss_dssp -GGGSS-EEEE--------SSSEEEE-TTHHHHHHTSST-EEEEE---------------EEEEEEESSHHHHHHHHHHH
T ss_pred hhhhhhceEeccccCCcccchhhhhhhhcCchhhhhcchHHHHHHHHhhcCCchhcccceEecccccCccHHHHHHHHHc
Confidence
Q ss_pred ----------------------------CCCC-----CCCCCCCCCCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCce
Q 002273 667 ----------------------------PEAG-----PVCPTPALTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSR 713 (944)
Q Consensus 667 ----------------------------~~~~-----~~~~~~~~~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~ 713 (944)
.+.| +.+...+|++|+|||||||+++||+|+++++|++||+++|+|+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~R~~~gLp~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~ 316 (468)
T PF13844_consen 237 GQVQTSVNGVVVQNGLATTQTNNKAATGEEVPQNIVVTTRAQYGLPEDAVVFGSFNNLFKISPETLDLWARILKAVPNSR 316 (468)
T ss_dssp T-SEEEETTEEEEECCGHHHH-HHHHTTSS--SSEEEEETGGGT--SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEE
T ss_pred CCeeEeECCEEeecccchhhhhccccCCccCCccccccCHHHcCCCCCceEEEecCccccCCHHHHHHHHHHHHhCCCcE
Confidence 0111 1133467899999999999999999999999999999999999
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecCC
Q 002273 714 LVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG 793 (944)
Q Consensus 714 l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g 793 (944)
|||+..+. ..+.+++++++++||+++||+|.|..+ ..+|+.+|+.+||+|||||||||||++|||||||||||++|
T Consensus 317 L~L~~~~~---~~~~~l~~~~~~~Gv~~~Ri~f~~~~~-~~ehl~~~~~~DI~LDT~p~nG~TTt~dALwmGVPvVTl~G 392 (468)
T PF13844_consen 317 LWLLRFPA---SGEARLRRRFAAHGVDPDRIIFSPVAP-REEHLRRYQLADICLDTFPYNGGTTTLDALWMGVPVVTLPG 392 (468)
T ss_dssp EEEEETST---THHHHHHHHHHHTTS-GGGEEEEE----HHHHHHHGGG-SEEE--SSS--SHHHHHHHHHT--EEB---
T ss_pred EEEeeCCH---HHHHHHHHHHHHcCCChhhEEEcCCCC-HHHHHHHhhhCCEEeeCCCCCCcHHHHHHHHcCCCEEeccC
Confidence 99987653 345789999999999999999999876 78999999999999999999999999999999999999999
Q ss_pred CcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 002273 794 SVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMW 869 (944)
Q Consensus 794 ~~~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 869 (944)
++|+||+|+|+|+++||+||||.|+++||++|++|++|++.|+++|++||+++.+|||||.++|+++||++|++||
T Consensus 393 ~~~~sR~~aSiL~~lGl~ElIA~s~~eYv~~Av~La~D~~~l~~lR~~Lr~~~~~SpLfd~~~~ar~lE~a~~~mW 468 (468)
T PF13844_consen 393 ETMASRVGASILRALGLPELIADSEEEYVEIAVRLATDPERLRALRAKLRDRRSKSPLFDPKRFARNLEAAYRQMW 468 (468)
T ss_dssp SSGGGSHHHHHHHHHT-GGGB-SSHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHSGGG-HHHHHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHcCCchhcCCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999
No 4
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-43 Score=373.03 Aligned_cols=433 Identities=26% Similarity=0.387 Sum_probs=305.4
Q ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 002273 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (944)
Q Consensus 45 ~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (944)
+......+++|...++.|+|.+|++.+..+...+|.+.+.+..++.++++..++++....-..+++.+|...++|.++|.
T Consensus 45 ~~~~~~~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN 124 (966)
T KOG4626|consen 45 HEGSDDRLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLAN 124 (966)
T ss_pred CccchhHHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHH
Confidence 34556689999999999999999999988887777665555445555555455554444444444455544455555555
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 002273 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204 (944)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 204 (944)
++...|++++|+..|+.++++.|++.++ +.++|.++..+|+.+.|..+|.++++++|+...+...+|.++..+
T Consensus 125 ~~kerg~~~~al~~y~~aiel~p~fida-------~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~ 197 (966)
T KOG4626|consen 125 ILKERGQLQDALALYRAAIELKPKFIDA-------YINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAE 197 (966)
T ss_pred HHHHhchHHHHHHHHHHHHhcCchhhHH-------HhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhh
Confidence 5555555555555555555555544443 344444444444444555555555555554444444444444444
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 002273 205 MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLF 284 (944)
Q Consensus 205 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~ 284 (944)
|+..+|..+|.++++..|..+-+|.+||-++..+|+...|+..|+++++++|+...++.+++.+|...+..+.+..-...
T Consensus 198 Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~r 277 (966)
T KOG4626|consen 198 GRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLR 277 (966)
T ss_pred cccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHH
Confidence 55555555555555444444444444554444455555555555555555555444555554444444433222111111
Q ss_pred hh-cCCC---CCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHH
Q 002273 285 RL-NGSN---FQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC 360 (944)
Q Consensus 285 ~~-~~~~---~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 360 (944)
.. ..+. ..-.++.+|..+|.++-|+..|+++++..|..++++.++|.++...|+..+|..+|.+++.+.|+.+++.
T Consensus 278 Al~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam 357 (966)
T KOG4626|consen 278 ALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAM 357 (966)
T ss_pred HHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHH
Confidence 11 0111 1112333466678889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 002273 361 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS 440 (944)
Q Consensus 361 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~ 440 (944)
++||.+|.++|++++|...|+++++..|+.+.++.+||.+|.++|++++|+.+|++++.+.|..++++.++|..|..+|+
T Consensus 358 ~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 358 NNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCChhhhhhHHHHhhhccCCChHHHHHHHHH
Q 002273 441 ISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRD 486 (944)
Q Consensus 441 ~~eA~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (944)
...|+++|.+|+.++|...+++.| ++..|-..|+-.++...++.
T Consensus 438 v~~A~q~y~rAI~~nPt~AeAhsN--Lasi~kDsGni~~AI~sY~~ 481 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQINPTFAEAHSN--LASIYKDSGNIPEAIQSYRT 481 (966)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHhh--HHHHhhccCCcHHHHHHHHH
Confidence 999999999999999999999999 56677788888777766553
No 5
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=6.8e-33 Score=330.43 Aligned_cols=382 Identities=16% Similarity=0.172 Sum_probs=333.7
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 002273 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (944)
Q Consensus 48 ~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (944)
+..+..+|..++..|+|++|+..|+++++..|+ +..+..+|.||..+|++++|+..++++++++|++..+++.+|.+|.
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 345678899999999999999999999999996 7789999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCChhH------------------------------HhHHHH-------------------
Q 002273 128 DEGRLVEAAESYHKALSADPSYKPA------------------------------AECLAI------------------- 158 (944)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~p~~~~~------------------------------~~~la~------------------- 158 (944)
.+|++++|+..|..+....+..... ...++.
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 9999999999887766554332111 000111
Q ss_pred -------HHHHHHHHH---HHcCChHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 002273 159 -------VLTDLGTSL---KLAGNTQDGIQKYYEALKI---DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA 225 (944)
Q Consensus 159 -------~~~~lg~~~---~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 225 (944)
.+..+|... ...+++++|++.|+++++. .|....++..+|.++..+|++++|+..|+++++.+|...
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~ 365 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVT 365 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 011111111 1236899999999999986 477888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCH
Q 002273 226 EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDI 305 (944)
Q Consensus 226 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 305 (944)
..+..+|.++...|++++|+..|+++++.+|++...+..++.++.. .|++
T Consensus 366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~------------------------------~g~~ 415 (615)
T TIGR00990 366 QSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFI------------------------------KGEF 415 (615)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH------------------------------cCCH
Confidence 9999999999999999999999999999999999999988887655 4566
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 002273 306 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALS 385 (944)
Q Consensus 306 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 385 (944)
++|+..|+++++.+|++...+..+|.++...|++++|+..|+++++..|+++.++..+|.++...|++++|++.|+++++
T Consensus 416 ~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~ 495 (615)
T TIGR00990 416 AQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIE 495 (615)
T ss_pred HHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHH------HHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002273 386 IKPNFSQS------LNNLGVV-YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 458 (944)
Q Consensus 386 ~~p~~~~~------~~~la~~-~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~ 458 (944)
+.|+.... +...+.+ +...|++++|+.+++++++++|++..++..+|.++...|++++|+.+|++++++.+..
T Consensus 496 l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~ 575 (615)
T TIGR00990 496 LEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTE 575 (615)
T ss_pred cCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccH
Confidence 99875332 2233333 3447999999999999999999999999999999999999999999999999998875
Q ss_pred hh
Q 002273 459 RN 460 (944)
Q Consensus 459 ~~ 460 (944)
.+
T Consensus 576 ~e 577 (615)
T TIGR00990 576 GE 577 (615)
T ss_pred HH
Confidence 54
No 6
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.1e-32 Score=345.40 Aligned_cols=430 Identities=19% Similarity=0.157 Sum_probs=373.0
Q ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 002273 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (944)
Q Consensus 45 ~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (944)
|.++..+..+|..+...|++++|+..|+++++.+|++..+++.++.++...|++++|+..|+++++.+|.+..++..++.
T Consensus 462 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 541 (899)
T TIGR02917 462 PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAG 541 (899)
T ss_pred CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 34556777778888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 002273 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204 (944)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 204 (944)
++...|++++|+..++++++.+|.+... +..++..+...|++++|+..++++++..|.+...+..+|.++...
T Consensus 542 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 614 (899)
T TIGR02917 542 LYLRTGNEEEAVAWLEKAAELNPQEIEP-------ALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAA 614 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchhH-------HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 8888888888888888888877776553 566777888899999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 002273 205 MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLF 284 (944)
Q Consensus 205 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~ 284 (944)
|++++|+..|+++++..|.++..+..++.++...|++++|+..|+++++..|++...+..++.++...++...+..+...
T Consensus 615 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 694 (899)
T TIGR02917 615 GDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKS 694 (899)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988887665554433
Q ss_pred hhcCCC----CCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHH
Q 002273 285 RLNGSN----FQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC 360 (944)
Q Consensus 285 ~~~~~~----~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 360 (944)
...... ....++.++...|++++|+..|++++...|++ ..+..++.++...|++++|++.++++++.+|++..++
T Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~ 773 (899)
T TIGR02917 695 LQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLR 773 (899)
T ss_pred HHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 322211 11234567888999999999999999999887 7788899999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 002273 361 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS 440 (944)
Q Consensus 361 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~ 440 (944)
+.+|.++...|++++|++.|+++++..|+++.++..++.++...|+ .+|+.+++++++..|+++..+..+|.++...|+
T Consensus 774 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 852 (899)
T TIGR02917 774 TALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGE 852 (899)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999999999999999999 889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhCCCChhhhhhHHHHhhhccCCChHHHHHHHH
Q 002273 441 ISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHR 485 (944)
Q Consensus 441 ~~eA~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 485 (944)
+++|+++|+++++.+|+++.+..++ +..+...|+.+++.+..+
T Consensus 853 ~~~A~~~~~~a~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~ 895 (899)
T TIGR02917 853 ADRALPLLRKAVNIAPEAAAIRYHL--ALALLATGRKAEARKELD 895 (899)
T ss_pred HHHHHHHHHHHHhhCCCChHHHHHH--HHHHHHcCCHHHHHHHHH
Confidence 9999999999999999988877764 556777788777665544
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1e-30 Score=329.89 Aligned_cols=417 Identities=21% Similarity=0.196 Sum_probs=216.6
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 002273 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVE 134 (944)
Q Consensus 55 A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 134 (944)
+..+...|++++|+..+++++...|.++..+..+|.++...|++++|+..|+++++.+|++..++..++.++...|++++
T Consensus 438 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~ 517 (899)
T TIGR02917 438 ILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDD 517 (899)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHH
Confidence 33333444444444444444444444444444444444455555555555555554444444444445555555555555
Q ss_pred HHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002273 135 AAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 214 (944)
Q Consensus 135 A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 214 (944)
|+..|+++++..|++... +..++.++...|++++|+..++++++.+|.+...+..++.+|...|++++|+..+
T Consensus 518 A~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 590 (899)
T TIGR02917 518 AIQRFEKVLTIDPKNLRA-------ILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAIL 590 (899)
T ss_pred HHHHHHHHHHhCcCcHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHH
Confidence 555555554444444332 3334444444555555555555555555555555555555555555555555555
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcC-CC---
Q 002273 215 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNG-SN--- 290 (944)
Q Consensus 215 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~-~~--- 290 (944)
+++++..|.+...+..+|.++...|++++|+..|+++++..|++...+..++.++...++...+.......... +.
T Consensus 591 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 670 (899)
T TIGR02917 591 NEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTE 670 (899)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH
Confidence 55555555555555555555555555555555555555555555555555555555554443332222211111 11
Q ss_pred CCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC
Q 002273 291 FQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR 370 (944)
Q Consensus 291 ~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 370 (944)
....+..++...|++++|+..++.+.+..|.+...+..+|.++...|++++|+..|++++...|++ ..+..++.++...
T Consensus 671 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~ 749 (899)
T TIGR02917 671 AQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLAS 749 (899)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHC
Confidence 111233444455555555555555555555555555555555555555555555555555555554 4455555555555
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002273 371 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 450 (944)
Q Consensus 371 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~ 450 (944)
|++++|++.++++++..|++..+++.+|.++...|++++|+..|+++++.+|+++.++..++.++...|+ .+|+..+++
T Consensus 750 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~ 828 (899)
T TIGR02917 750 GNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEK 828 (899)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHH
Confidence 6666666666666555565555666666666666666666666666666666555566666666666665 556666666
Q ss_pred HHhhCCCChhhhhhHHHHhhhccCCChHHHHH
Q 002273 451 CLKIDPDSRNAGQNRLLAMNYINEGHDDKLFE 482 (944)
Q Consensus 451 al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~ 482 (944)
++++.|+++....+ ++..+...|+.+++.+
T Consensus 829 ~~~~~~~~~~~~~~--~~~~~~~~g~~~~A~~ 858 (899)
T TIGR02917 829 ALKLAPNIPAILDT--LGWLLVEKGEADRALP 858 (899)
T ss_pred HHhhCCCCcHHHHH--HHHHHHHcCCHHHHHH
Confidence 66666655554433 2333444455444443
No 8
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=8.7e-31 Score=332.05 Aligned_cols=441 Identities=18% Similarity=0.157 Sum_probs=351.2
Q ss_pred CCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC----------------------------------CCHHH----
Q 002273 43 LKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDS----------------------------------GNVEA---- 84 (944)
Q Consensus 43 ~~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p----------------------------------~~~~~---- 84 (944)
..|.+....+.+|..++..|++++|+..++++++..+ +....
T Consensus 176 ~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~ 255 (1157)
T PRK11447 176 DYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAAR 255 (1157)
T ss_pred hCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHH
Confidence 3466788899999999999999999999999865432 11100
Q ss_pred ----------------HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 002273 85 ----------------HIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPS 148 (944)
Q Consensus 85 ----------------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 148 (944)
...+|.++...|++++|+..|+++++.+|+++.++..+|.++..+|++++|+..|+++++.+|+
T Consensus 256 ~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~ 335 (1157)
T PRK11447 256 SQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPH 335 (1157)
T ss_pred HHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 0134778889999999999999999999999999999999999999999999999999999998
Q ss_pred ChhHH--hH-----HHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 002273 149 YKPAA--EC-----LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER 221 (944)
Q Consensus 149 ~~~~~--~~-----la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 221 (944)
+.... .. .......+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|++.|+++++.+
T Consensus 336 ~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~ 415 (1157)
T PRK11447 336 SSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD 415 (1157)
T ss_pred ccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 75421 11 112334568889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHH------------------------------------------HHHcCCHHHHHHHHHHHHHhCCCcH
Q 002273 222 PMYAEAYCNMGVI------------------------------------------YKNRGDLESAIACYERCLAVSPNFE 259 (944)
Q Consensus 222 p~~~~~~~~la~~------------------------------------------~~~~g~~~~A~~~~~~al~~~p~~~ 259 (944)
|.+..++..++.+ +...|++++|++.|+++++.+|++.
T Consensus 416 p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~ 495 (1157)
T PRK11447 416 PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSV 495 (1157)
T ss_pred CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 9988776655544 4457888888888888888888888
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHhhc-CCCCCc---hhHHHhhhcCCHHHHHHHHHHHHHhCCCC----------HHH
Q 002273 260 IAKNNMAIALTDLGTKTYGRALLLFRLN-GSNFQS---PFFELVKLEGDINQGVAYYKKALYYNWHY----------ADA 325 (944)
Q Consensus 260 ~~~~~la~~l~~~~~~~~~~a~~~~~~~-~~~~~~---~~~~l~~~~~~~~~A~~~~~~al~~~p~~----------~~~ 325 (944)
..+..++.++...|+...+......... .+.... ....++...+++++|+..++++....... ...
T Consensus 496 ~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~ 575 (1157)
T PRK11447 496 WLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQ 575 (1157)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhH
Confidence 8888888888887776555444433222 111111 12233455677777777766643221110 112
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 002273 326 MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 405 (944)
Q Consensus 326 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 405 (944)
...++..+...|++++|+.+++ ..|.++..+..+|.++.+.|++++|++.|+++++.+|+++.++..++.+|...|
T Consensus 576 ~l~~a~~l~~~G~~~eA~~~l~----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g 651 (1157)
T PRK11447 576 VLETANRLRDSGKEAEAEALLR----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQG 651 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHH----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 3456667777777777777665 578899999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhh----hhhHHHHhhhccCCChHHHH
Q 002273 406 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA----GQNRLLAMNYINEGHDDKLF 481 (944)
Q Consensus 406 ~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a----~~~~~~~~~~~~~~~~~~~~ 481 (944)
++++|++.++++++..|++..++..+|.++...|++++|++.|++++...|+++.. ...+..+..+...|+.+++.
T Consensus 652 ~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~ 731 (1157)
T PRK11447 652 DLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQAL 731 (1157)
T ss_pred CHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999998876542 22223355667778888877
Q ss_pred HHHHHH
Q 002273 482 EAHRDW 487 (944)
Q Consensus 482 ~~~~~~ 487 (944)
+.++..
T Consensus 732 ~~y~~A 737 (1157)
T PRK11447 732 ETYKDA 737 (1157)
T ss_pred HHHHHH
Confidence 666543
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=4.1e-31 Score=335.01 Aligned_cols=397 Identities=15% Similarity=0.093 Sum_probs=346.2
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHH--------------H
Q 002273 53 SYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNAC--------------A 118 (944)
Q Consensus 53 ~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--------------~ 118 (944)
.+|..+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++.. .
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 45888999999999999999999999999999999999999999999999999999999997643 1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 002273 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLG 198 (944)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 198 (944)
...+|.++...|++++|+..|+++++.+|++..+ +..+|.++...|++++|++.|+++++.+|++..++..++
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a-------~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~ 426 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYA-------VLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLA 426 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 2345888999999999999999999999988664 677899999999999999999999999999887765554
Q ss_pred HH------------------------------------------HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002273 199 VV------------------------------------------YSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK 236 (944)
Q Consensus 199 ~~------------------------------------------~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 236 (944)
.+ +...|++++|++.|+++++.+|+++.+++.+|.+|.
T Consensus 427 ~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~ 506 (1157)
T PRK11447 427 NLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLR 506 (1157)
T ss_pred HHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 44 456799999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCC--------------CCCchhHHHhhhc
Q 002273 237 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGS--------------NFQSPFFELVKLE 302 (944)
Q Consensus 237 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~--------------~~~~~~~~l~~~~ 302 (944)
..|++++|+..++++++..|+++..++.++..+...++...+........... ......+..+...
T Consensus 507 ~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~ 586 (1157)
T PRK11447 507 QAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDS 586 (1157)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHC
Confidence 99999999999999999999999999888887777666544433322111000 0001234567788
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 002273 303 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 382 (944)
Q Consensus 303 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 382 (944)
|++++|+..++ ..|.++..+..+|.++...|++++|+..|+++++.+|+++.++..++.++...|++++|++.+++
T Consensus 587 G~~~eA~~~l~----~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 587 GKEAEAEALLR----QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred CCHHHHHHHHH----hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999998876 58999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHh---
Q 002273 383 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA------EAYNNLGVLYRDAGSISLAIDAYEQCLK--- 453 (944)
Q Consensus 383 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~------~a~~~la~~~~~~g~~~eA~~~~~~al~--- 453 (944)
+++..|++...+..+|.++...|++++|+++|++++...|+++ .++..+|.++...|++++|++.|++++.
T Consensus 663 ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~ 742 (1157)
T PRK11447 663 LPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASG 742 (1157)
T ss_pred HhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999999876543 4667789999999999999999999986
Q ss_pred hCCCChh
Q 002273 454 IDPDSRN 460 (944)
Q Consensus 454 l~P~~~~ 460 (944)
+.|..+.
T Consensus 743 ~~~~~p~ 749 (1157)
T PRK11447 743 ITPTRPQ 749 (1157)
T ss_pred CCCCCCC
Confidence 4444443
No 10
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=100.00 E-value=1e-29 Score=301.60 Aligned_cols=365 Identities=11% Similarity=-0.018 Sum_probs=252.4
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 002273 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (944)
Q Consensus 48 ~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (944)
...+...+..+..+|++++|+.+++.++...|++..+++.+|.+....|++++|+..|+++++.+|+++.++..+|.++.
T Consensus 42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~ 121 (656)
T PRK15174 42 EQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLL 121 (656)
T ss_pred ccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 34455666777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 002273 128 DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQY 207 (944)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 207 (944)
..|++++|+..|+++++++|++... +..++.++...|++++|+..+++++...|++..++..++ .+...|++
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~P~~~~a-------~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~ 193 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAFSGNSQI-------FALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRL 193 (656)
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHH-------HHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCH
Confidence 7777777777777777777776554 555666677777777777777777777777777666554 36677777
Q ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhh
Q 002273 208 DTALGCYEKAALERPM-YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRL 286 (944)
Q Consensus 208 ~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~ 286 (944)
++|+..++++++.+|. .......++.++...|++++|+..|++++...|++...+..++.++...|+..
T Consensus 194 ~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~---------- 263 (656)
T PRK15174 194 PEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSR---------- 263 (656)
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCch----------
Confidence 7777777777776542 33344455667777777777777777777777777766666666655544330
Q ss_pred cCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 002273 287 NGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI 366 (944)
Q Consensus 287 ~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 366 (944)
....+|+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|+++.++..+|.+
T Consensus 264 ----------------eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~ 327 (656)
T PRK15174 264 ----------------EAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARA 327 (656)
T ss_pred ----------------hhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 0001366677777777777777777777777777777777777777777777776667777777
Q ss_pred HHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002273 367 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAID 446 (944)
Q Consensus 367 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~ 446 (944)
+...|++++|+..|+++++.+|++...+..+|.++...|++++|+..|+++++.+|++. ...+++|+.
T Consensus 328 l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea~~ 395 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEGLL 395 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHHHH
Confidence 77777777777777777766666666555566666667777777777777777666653 234456666
Q ss_pred HHHHHHhhCCCC
Q 002273 447 AYEQCLKIDPDS 458 (944)
Q Consensus 447 ~~~~al~l~P~~ 458 (944)
.|.++++..+..
T Consensus 396 ~~~~~~~~~~~~ 407 (656)
T PRK15174 396 ALDGQISAVNLP 407 (656)
T ss_pred HHHHHHHhcCCc
Confidence 666666655444
No 11
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=100.00 E-value=2.4e-29 Score=300.04 Aligned_cols=364 Identities=20% Similarity=0.193 Sum_probs=311.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHH
Q 002273 82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLT 161 (944)
Q Consensus 82 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 161 (944)
...+..+|..++..|+|++|+..|+++++..|+ +..+.++|.+|..+|++++|+..++++++++|++..+ +.
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a-------~~ 198 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKA-------LN 198 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHH-------HH
Confidence 456778999999999999999999999999996 7789999999999999999999999999999998765 77
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCC------------------------------CHHHH-----------------
Q 002273 162 DLGTSLKLAGNTQDGIQKYYEALKIDPH------------------------------YAPAY----------------- 194 (944)
Q Consensus 162 ~lg~~~~~~g~~~~A~~~~~~al~~~p~------------------------------~~~~~----------------- 194 (944)
.+|.++..+|++++|+..|..+...++. +...+
T Consensus 199 ~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (615)
T TIGR00990 199 RRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPA 278 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchh
Confidence 7888888999999998877665443322 11111
Q ss_pred ----------------HHHHHHH---HHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002273 195 ----------------YNLGVVY---SELMQYDTALGCYEKAALE---RPMYAEAYCNMGVIYKNRGDLESAIACYERCL 252 (944)
Q Consensus 195 ----------------~~la~~~---~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 252 (944)
..++..+ ...++|++|++.|+++++. .|....++..+|.++..+|++++|+..|++++
T Consensus 279 ~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal 358 (615)
T TIGR00990 279 GLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI 358 (615)
T ss_pred hhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1111111 1235799999999999986 46778899999999999999999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002273 253 AVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA 332 (944)
Q Consensus 253 ~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 332 (944)
..+|++...+..++.++... |++++|+..|+++++.+|+++.+++.+|.+
T Consensus 359 ~l~P~~~~~~~~la~~~~~~------------------------------g~~~eA~~~~~~al~~~p~~~~~~~~lg~~ 408 (615)
T TIGR00990 359 ELDPRVTQSYIKRASMNLEL------------------------------GDPDKAEEDFDKALKLNSEDPDIYYHRAQL 408 (615)
T ss_pred HcCCCcHHHHHHHHHHHHHC------------------------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999998888876654 566999999999999999999999999999
Q ss_pred HHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002273 333 YGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 412 (944)
Q Consensus 333 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 412 (944)
+...|++++|+..|+++++++|++...+..+|.++...|++++|+..|+++++..|+++.++..+|.++...|++++|++
T Consensus 409 ~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~ 488 (615)
T TIGR00990 409 HFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIE 488 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHH------HHHHH-HHHHcCCHHHHHHHHHHHHhhCCCChhhhhhHHHHhhhccCCChHHHHHHHH
Q 002273 413 MIEKAIAANPTYAEAY------NNLGV-LYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHR 485 (944)
Q Consensus 413 ~l~~al~~~p~~~~a~------~~la~-~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 485 (944)
.|++++++.|+....+ ...+. ++...|++++|++.++++++++|++..++.. ++..+...|+.+++.+...
T Consensus 489 ~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~--la~~~~~~g~~~eAi~~~e 566 (615)
T TIGR00990 489 KFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVAT--MAQLLLQQGDVDEALKLFE 566 (615)
T ss_pred HHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH--HHHHHHHccCHHHHHHHHH
Confidence 9999999998753322 22233 3445799999999999999999998876654 4666777888777665544
No 12
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=100.00 E-value=5.9e-29 Score=289.33 Aligned_cols=531 Identities=12% Similarity=0.055 Sum_probs=351.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 002273 306 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALS 385 (944)
Q Consensus 306 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 385 (944)
.+++..+.......|.+++++.+||.+....|.+++|...++.++++.|++..++.+++.++.+.+++++|+..+++++.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~ 148 (694)
T PRK15179 69 AAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS 148 (694)
T ss_pred HhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh
Confidence 44455555556678899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhhH
Q 002273 386 IKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 465 (944)
Q Consensus 386 ~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~ 465 (944)
.+|+++..++.+|.++.++|++++|+..|++++..+|+++.++..+|.++...|+.++|...|+++++...+-...+.++
T Consensus 149 ~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~ 228 (694)
T PRK15179 149 GGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRR 228 (694)
T ss_pred cCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988877665555
Q ss_pred HHHhhh----ccC--------CChHHHH---HHHHHHHHHHhhhccCCCCCCCCCCCCCCc-EEEeecCCCccCcHHHHH
Q 002273 466 LLAMNY----INE--------GHDDKLF---EAHRDWGKRFMRLYSQYTSWDNTKDPERPL-VIGYVSPDYFTHSVSYFI 529 (944)
Q Consensus 466 ~~~~~~----~~~--------~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-riGy~S~d~~~h~v~~~~ 529 (944)
+--++- +.. |.+-... .....++.+ +...++ ..|.++. ||-++-..+..=-...++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~--~~~~~~~~rIl~vi~sl~~GGAEr~~ 300 (694)
T PRK15179 229 LVDLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR------RNAEYD--AGPESFVGPVLMINGSLGAGGAERQF 300 (694)
T ss_pred HHHHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc------Cccccc--CCCCCCcceEEEEeCCCCCCcHHHHH
Confidence 432221 110 0000000 001111111 111112 2345667 788887666543333444
Q ss_pred HhhhhhccCCc--------------EEEEEEecccc--CChhhHHHHHHHhhhCCceEeccC------------------
Q 002273 530 EAPLVYHDYQN--------------YKVVVYSAVVK--ADAKTIRFREKVMKKGGIWRDIYG------------------ 575 (944)
Q Consensus 530 ~~~l~~~d~~~--------------fev~~y~~~~~--~d~~t~~~~~~~~~~~~~~~~~~~------------------ 575 (944)
..+..+.++.+ .+|+|.+.... .+.....++..-.. -++....+
T Consensus 301 ~~La~~l~~~~~~~~~~~g~g~~~~~~V~~~~~~~~~g~~~~~~~L~~~Gv~--v~~l~~~~~~~~~~~~~~~~~~~~~~ 378 (694)
T PRK15179 301 VNTAVALQSAIQQGQSIAGYGVLGPVQVVCRSLRSREGADFFAATLADAGIP--VSVYSDMQAWGGCEFSSLLAPYREYL 378 (694)
T ss_pred HHHHHHHHhcccCcccccCccCCCCcEEEEEecccccCcchHHHHHHhCCCe--EEEeccCCccCcccccccchhhHHHh
Confidence 44555555543 35666543221 12333333321000 00111110
Q ss_pred --CC------HHHHHHHhHhCCccEEEecCCCCCC-CchhhhccCC--cceee-ecccCCCCCCCC--------------
Q 002273 576 --ID------EKKVAAMVREDKIDILVELTGHTAN-NKLGMMACQP--APVQV-TWIGYPNTTGLP-------------- 629 (944)
Q Consensus 576 --~~------~~~~a~~i~~d~idilvdl~g~t~~-~~~~~~a~r~--ApvQ~-~~~G~p~t~g~~-------------- 629 (944)
++ -..+.+.|++.++||+.- |+.. +.++.++.+. .|+-+ ++-|+|......
T Consensus 379 ~~lp~~~~~~~~~L~~~lk~~kpDIVH~---h~~~a~~lg~lAa~~~gvPvIv~t~h~~~~~~~~~~~~~~~~~l~~~l~ 455 (694)
T PRK15179 379 RFLPKQIIEGTTKLTDVMRSSVPSVVHI---WQDGSIFACALAALLAGVPRIVLSVRTMPPVDRPDRYRVEYDIIYSELL 455 (694)
T ss_pred hhcchhHHHHHHHHHHHHHHcCCcEEEE---eCCcHHHHHHHHHHHcCCCEEEEEeCCCccccchhHHHHHHHHHHHHHH
Confidence 00 156888999999999963 3322 2334444433 35533 333333211100
Q ss_pred Cc--cEEEecCCCCCccc---ccccccceEEcCCCcc--ccCCCCCCCC--CCCCCCCCCCCeEEEecCCC--CcCCHHH
Q 002273 630 TI--DYRITDSLADPPET---KQKHVEELIRLPECFL--CYTPSPEAGP--VCPTPALTNGFITFGSFNNL--AKITPKV 698 (944)
Q Consensus 630 ~~--Dy~i~d~~~~p~~~---~~~~~e~~~~lp~~~~--~~~~~~~~~~--~~~~~~~~~~~~~f~~~~~~--~K~~~~~ 698 (944)
.+ +.+|+.....-... -..-.+++..+|+..- .|.|.+.... ..-...++++.+++|++.++ .|..+.+
T Consensus 456 ~~~~~i~Vs~S~~~~~~l~~~~g~~~~kI~VI~NGVd~~~f~~~~~~~~~~~~~~~~~~~~~~vIg~VGRL~~~KG~~~L 535 (694)
T PRK15179 456 KMRGVALSSNSQFAAHRYADWLGVDERRIPVVYNGLAPLKSVQDDACTAMMAQFDARTSDARFTVGTVMRVDDNKRPFLW 535 (694)
T ss_pred hcCCeEEEeCcHHHHHHHHHHcCCChhHEEEECCCcCHHhcCCCchhhHHHHhhccccCCCCeEEEEEEeCCccCCHHHH
Confidence 01 22333211000000 0112357777776421 1222111000 00012234566778888754 7999999
Q ss_pred HHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCC-CCccc
Q 002273 699 LQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTT 777 (944)
Q Consensus 699 ~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-~~~~t 777 (944)
+++++++++..|+.+|+|+|.+ ..++.+++..+++|+ .+||.|.|... +....|..+||++-|+.+ +.+++
T Consensus 536 I~A~a~l~~~~p~~~LvIvG~G----~~~~~L~~l~~~lgL-~~~V~flG~~~---dv~~ll~aaDv~VlpS~~Egfp~v 607 (694)
T PRK15179 536 VEAAQRFAASHPKVRFIMVGGG----PLLESVREFAQRLGM-GERILFTGLSR---RVGYWLTQFNAFLLLSRFEGLPNV 607 (694)
T ss_pred HHHHHHHHHHCcCeEEEEEccC----cchHHHHHHHHHcCC-CCcEEEcCCcc---hHHHHHHhcCEEEeccccccchHH
Confidence 9999999999999999999876 456788889999999 59999999854 566778889999888766 66999
Q ss_pred HHHhhhcCCcEEecCCCcccccchhH-HHhhcCCcccccC--C--HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCC
Q 002273 778 TCESLYMGVPCVTMAGSVHAHNVGVS-LLTKVGLKHLIAK--N--EDEYVQLALQLASDVTALANLRMSLRDLMSKSPVC 852 (944)
Q Consensus 778 ~~eal~~gvPvvt~~g~~~~~r~~~~-~l~~~gl~~~v~~--~--~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~ 852 (944)
++|||+||+|||+ +++|+. -+-.-|...++.. | .+++.+...++..++.....+++..+++.. ..|
T Consensus 608 lLEAMA~G~PVVa-------t~~gG~~EiV~dg~~GlLv~~~d~~~~~La~aL~~ll~~l~~~~~l~~~ar~~a~--~~F 678 (694)
T PRK15179 608 LIEAQFSGVPVVT-------TLAGGAGEAVQEGVTGLTLPADTVTAPDVAEALARIHDMCAADPGIARKAADWAS--ARF 678 (694)
T ss_pred HHHHHHcCCeEEE-------ECCCChHHHccCCCCEEEeCCCCCChHHHHHHHHHHHhChhccHHHHHHHHHHHH--HhC
Confidence 9999999999999 666610 0111133344433 3 346666666666655555567777777654 349
Q ss_pred ChHHHHHHHHHHHH
Q 002273 853 DGQNFALGLESTYR 866 (944)
Q Consensus 853 ~~~~~~~~~e~~~~ 866 (944)
+++.+++.++++|+
T Consensus 679 S~~~~~~~~~~lY~ 692 (694)
T PRK15179 679 SLNQMIASTVRCYQ 692 (694)
T ss_pred CHHHHHHHHHHHhC
Confidence 99999999999995
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.98 E-value=4.3e-29 Score=296.36 Aligned_cols=366 Identities=13% Similarity=0.024 Sum_probs=327.7
Q ss_pred HHhCCCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 002273 58 LRSRNKFVDALALYEIVLEKD---SGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVE 134 (944)
Q Consensus 58 ~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 134 (944)
++++.+|+.-.-++...-+.. .++.......+..+...|++++|+..++..+...|+++.+++.+|.+....|++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~ 94 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDA 94 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHH
Confidence 455666766655665554432 23455667778888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002273 135 AAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 214 (944)
Q Consensus 135 A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 214 (944)
|+..|+++++.+|++..+ +..+|.++...|++++|+..|+++++.+|++..++..++.++...|++++|+..+
T Consensus 95 A~~~l~~~l~~~P~~~~a-------~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~ 167 (656)
T PRK15174 95 VLQVVNKLLAVNVCQPED-------VLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLA 167 (656)
T ss_pred HHHHHHHHHHhCCCChHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHH
Confidence 999999999999999776 6778888889999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCc
Q 002273 215 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE-IAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQS 293 (944)
Q Consensus 215 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~ 293 (944)
++++...|++...+..++ .+...|++++|+..++++++.+|... .....++.+
T Consensus 168 ~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~------------------------- 221 (656)
T PRK15174 168 RTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDT------------------------- 221 (656)
T ss_pred HHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHH-------------------------
Confidence 999999999998887764 48899999999999999999876432 222223333
Q ss_pred hhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH----HHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002273 294 PFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDM----AIVFYELAFHFNPHCAEACNNLGVIYKD 369 (944)
Q Consensus 294 ~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~p~~~~~~~~la~~~~~ 369 (944)
+...|++++|+..++++++.+|+++.++..+|.++...|++++ |+..|+++++.+|++..++..+|.++..
T Consensus 222 -----l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~ 296 (656)
T PRK15174 222 -----LCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIR 296 (656)
T ss_pred -----HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 3446778999999999999999999999999999999999986 8999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002273 370 RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYE 449 (944)
Q Consensus 370 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~ 449 (944)
.|++++|+..++++++++|+++.++..+|.++...|++++|+..|++++..+|++...+..+|.++...|++++|++.|+
T Consensus 297 ~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~ 376 (656)
T PRK15174 297 TGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFE 376 (656)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998888888999999999999999999
Q ss_pred HHHhhCCCChhh
Q 002273 450 QCLKIDPDSRNA 461 (944)
Q Consensus 450 ~al~l~P~~~~a 461 (944)
++++.+|++...
T Consensus 377 ~al~~~P~~~~~ 388 (656)
T PRK15174 377 HYIQARASHLPQ 388 (656)
T ss_pred HHHHhChhhchh
Confidence 999999998643
No 14
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.97 E-value=9.2e-28 Score=269.44 Aligned_cols=414 Identities=22% Similarity=0.294 Sum_probs=289.8
Q ss_pred CCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 002273 43 LKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSG-NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTH 121 (944)
Q Consensus 43 ~~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 121 (944)
..|.+.-.++..|.+.+..|+|..|+.+|++++..+|. -++....+|.|+.++|+.+.|+..|.++++++|.+..++..
T Consensus 159 ~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~ 238 (1018)
T KOG2002|consen 159 QSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVA 238 (1018)
T ss_pred hCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHH
Confidence 34557888999999999999999999999999999997 46788899999999999999999999999999999988888
Q ss_pred HHHHHHHcC---CHHHHHHHHHHHHHcCCCChhHHhHHH------------------------------HHHHHHHHHHH
Q 002273 122 CGILYKDEG---RLVEAAESYHKALSADPSYKPAAECLA------------------------------IVLTDLGTSLK 168 (944)
Q Consensus 122 la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la------------------------------~~~~~lg~~~~ 168 (944)
||.+-.... .+..+...+.++...++.++.+...++ ..++.+|.++.
T Consensus 239 L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~H 318 (1018)
T KOG2002|consen 239 LGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYH 318 (1018)
T ss_pred HHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 888766554 466788888888888888877654443 34678899999
Q ss_pred HcCChHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----CHHH
Q 002273 169 LAGNTQDGIQKYYEALKIDPHY-APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG----DLES 243 (944)
Q Consensus 169 ~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~ 243 (944)
.+|++++|..+|.++++.++++ .-.++.+|++|...|+++.|+.+|+++++..|++.+....+|.+|...+ ..++
T Consensus 319 a~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~ 398 (1018)
T KOG2002|consen 319 AQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDK 398 (1018)
T ss_pred hhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHH
Confidence 9999999999999999999888 7788999999999999999999999999999999999999999998875 6788
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhh----hhhHHHHHhhcCC----CCCchhHHHhhhcCC-----------
Q 002273 244 AIACYERCLAVSPNFEIAKNNMAIALTDLGTKT----YGRALLLFRLNGS----NFQSPFFELVKLEGD----------- 304 (944)
Q Consensus 244 A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~----~~~a~~~~~~~~~----~~~~~~~~l~~~~~~----------- 304 (944)
|..++.++++..|.+..+|..++.++....... +..+......... .....++.++...|+
T Consensus 399 a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A 478 (1018)
T KOG2002|consen 399 ASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSA 478 (1018)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHH
Confidence 899999999999999999998888776544332 1112211111111 111123334444444
Q ss_pred ---------------------------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 002273 305 ---------------------------------INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH 351 (944)
Q Consensus 305 ---------------------------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 351 (944)
++.|.+.|+..++.+|...+++..+|......++..+|...++.++.
T Consensus 479 ~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~ 558 (1018)
T KOG2002|consen 479 LGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALN 558 (1018)
T ss_pred hhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHh
Confidence 44444555555555555555555554444444445555555555554
Q ss_pred hCCCCHHHHHHHHHHHHHC------------------------------------------------CCHHHHHHHHHHH
Q 002273 352 FNPHCAEACNNLGVIYKDR------------------------------------------------DNLDKAVECYQMA 383 (944)
Q Consensus 352 ~~p~~~~~~~~la~~~~~~------------------------------------------------g~~~~A~~~~~~a 383 (944)
.+..++.++..+|.++... +.+++|+++|.++
T Consensus 559 ~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kv 638 (1018)
T KOG2002|consen 559 IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKV 638 (1018)
T ss_pred cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHH
Confidence 4444444443333322211 2345555555555
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 002273 384 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 456 (944)
Q Consensus 384 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P 456 (944)
++.+|.+..+-..+|.++...|++.+|+.+|.++.+...++..+|.++|.||..+|+|..|++.|+.+++..-
T Consensus 639 L~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~ 711 (1018)
T KOG2002|consen 639 LRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFY 711 (1018)
T ss_pred HhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5555555555555555555555555555555555555444555666666666666666666666666665543
No 15
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.97 E-value=5e-27 Score=283.79 Aligned_cols=157 Identities=13% Similarity=0.019 Sum_probs=138.0
Q ss_pred CCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 002273 43 LKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC 122 (944)
Q Consensus 43 ~~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 122 (944)
...+....++..|..+...|++++|+..|+++++.+|+++.+++.++.+|...|++++|+..++++++.+|++...+..+
T Consensus 39 ~~~~~~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~L 118 (987)
T PRK09782 39 YRHFVIYPRLDKALKAQKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSL 118 (987)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 44567788999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHH---------------------------------HHHHHHHHHH
Q 002273 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV---------------------------------LTDLGTSLKL 169 (944)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~---------------------------------~~~lg~~~~~ 169 (944)
+.+ +++++|+..|+++++.+|++.+....++.. ...++.+|..
T Consensus 119 a~i----~~~~kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~lr~~~~~~~~~vL~L~~~rlY~~ 194 (987)
T PRK09782 119 AAI----PVEVKSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQLNDATFAASPEGKTLRTDLLQRAIY 194 (987)
T ss_pred HHh----ccChhHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHHHHhhhCCCCCcHHHHHHHHHHHHH
Confidence 776 999999999999999999999988777775 1223778889
Q ss_pred cCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002273 170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE 203 (944)
Q Consensus 170 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 203 (944)
++++++|+..+.++++..|.+......++.+|..
T Consensus 195 l~dw~~Ai~lL~~L~k~~pl~~~~~~~L~~ay~q 228 (987)
T PRK09782 195 LKQWSQADTLYNEARQQNTLSAAERRQWFDVLLA 228 (987)
T ss_pred HhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 9999999999999999888776666555555554
No 16
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=9.5e-28 Score=249.90 Aligned_cols=379 Identities=18% Similarity=0.174 Sum_probs=315.0
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 002273 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (944)
Q Consensus 48 ~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (944)
+..+-..|+.++.+|+|++||++|.++++..|+.+..|.+++-||...|++++.++...++++++|+...+++..+..+.
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE 194 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence 45566788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHc--------------------------------CCCChhHHhHHHH-----------------
Q 002273 128 DEGRLVEAAESYHKALSA--------------------------------DPSYKPAAECLAI----------------- 158 (944)
Q Consensus 128 ~~g~~~~A~~~~~~al~~--------------------------------~p~~~~~~~~la~----------------- 158 (944)
.+|++++|+....-..-. .|.-+.+ ..++.
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~-~fi~syf~sF~~~~~~~~~~~~ 273 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSA-TFIASYFGSFHADPKPLFDNKS 273 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcH-HHHHHHHhhccccccccccCCC
Confidence 999999987554321110 0100000 00000
Q ss_pred ----HHHHHHHHHHHcC---ChHHHHHHHHHHHhhC----CCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002273 159 ----VLTDLGTSLKLAG---NTQDGIQKYYEALKID----PHY---------APAYYNLGVVYSELMQYDTALGCYEKAA 218 (944)
Q Consensus 159 ----~~~~lg~~~~~~g---~~~~A~~~~~~al~~~----p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al 218 (944)
....-+.-....+ .|.+|...+.+..... ..+ +.++...|..++-.|++..|.+.|+++|
T Consensus 274 ~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I 353 (606)
T KOG0547|consen 274 DKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAI 353 (606)
T ss_pred ccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHH
Confidence 0000001111112 4555555555543321 112 5677778888899999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHH
Q 002273 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFEL 298 (944)
Q Consensus 219 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 298 (944)
+++|.....|..++.+|...++.++-...|.++.+++|+++..++..+.++.-+++
T Consensus 354 ~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q------------------------ 409 (606)
T KOG0547|consen 354 KLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQ------------------------ 409 (606)
T ss_pred hcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHH------------------------
Confidence 99999988899999999999999999999999999999999999999988777664
Q ss_pred hhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHH
Q 002273 299 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE 378 (944)
Q Consensus 299 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 378 (944)
+++|+.-|++++.++|++.-.+..++.+.++++++++++..|+.+.+..|+.++++...|.++..++++++|++
T Consensus 410 ------~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k 483 (606)
T KOG0547|consen 410 ------YEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVK 483 (606)
T ss_pred ------HHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHH
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCC------CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002273 379 CYQMALSIKPN------FSQSLNNLGVVYT-VQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 451 (944)
Q Consensus 379 ~~~~al~~~p~------~~~~~~~la~~~~-~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~a 451 (944)
.|.+++++.|. ++..+...|.+.. ..+++.+|+.++++|++++|....++..||.+..++|+.++|+++|+++
T Consensus 484 ~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 484 QYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred HHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999998 5555555554433 4689999999999999999999999999999999999999999999999
Q ss_pred HhhCCC
Q 002273 452 LKIDPD 457 (944)
Q Consensus 452 l~l~P~ 457 (944)
+.+.-.
T Consensus 564 a~lArt 569 (606)
T KOG0547|consen 564 AQLART 569 (606)
T ss_pred HHHHHh
Confidence 887544
No 17
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.97 E-value=2.8e-27 Score=286.97 Aligned_cols=408 Identities=13% Similarity=0.047 Sum_probs=306.9
Q ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 002273 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (944)
Q Consensus 46 ~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (944)
.++...-....++...|++++|++.+.++...+|....++..+|.++...|++++|+..|+++++.+|.++.++..++.+
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~ 92 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILT 92 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 35555666677778899999999999999988999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 002273 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM 205 (944)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 205 (944)
+...|++++|+..++++++..|++.. +..+|.++...|++++|+..++++++.+|++..++..++.++...+
T Consensus 93 l~~~g~~~eA~~~l~~~l~~~P~~~~--------~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~ 164 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVSGAPDKAN--------LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNR 164 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHH--------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 99999999999999999999999865 3456777788899999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHH-----cCCH---HHHHHHHHHHHHhCCCcHHHHHHH-------
Q 002273 206 QYDTALGCYEKAALERPMYA-----EAYCNMGVIYKN-----RGDL---ESAIACYERCLAVSPNFEIAKNNM------- 265 (944)
Q Consensus 206 ~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~-----~g~~---~~A~~~~~~al~~~p~~~~~~~~l------- 265 (944)
+.++|+..++++.. .|... .....+..+... .+++ ++|++.++++++..|.++.....+
T Consensus 165 ~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~ 243 (765)
T PRK10049 165 LSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDR 243 (765)
T ss_pred ChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHH
Confidence 99999999998765 44321 122222233322 2334 789999999997654443321111
Q ss_pred HHHHHHhhhhhhhhHHHHHhhcCCC-CCc----hhHHHhhhcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHc
Q 002273 266 AIALTDLGTKTYGRALLLFRLNGSN-FQS----PFFELVKLEGDINQGVAYYKKALYYNWHY----ADAMYNLGVAYGEM 336 (944)
Q Consensus 266 a~~l~~~~~~~~~~a~~~~~~~~~~-~~~----~~~~l~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~ 336 (944)
...+...++...+............ ... .+..++...|++++|+..|+++++.+|.+ ......++.++...
T Consensus 244 l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~ 323 (765)
T PRK10049 244 LGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLES 323 (765)
T ss_pred HHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhc
Confidence 1223333433333322222221111 111 24556777777888888888777766654 34566666677777
Q ss_pred CChHHHHHHHHHHHhhCCC---------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 002273 337 LKFDMAIVFYELAFHFNPH---------------CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVY 401 (944)
Q Consensus 337 g~~~~A~~~~~~al~~~p~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 401 (944)
|++++|+..++++....|. ...++..++.++...|++++|++.+++++...|++..++..+|.++
T Consensus 324 g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~ 403 (765)
T PRK10049 324 ENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVL 403 (765)
T ss_pred ccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 8888888888777776652 1345667777777788888888888888888888878888888888
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhh
Q 002273 402 TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 462 (944)
Q Consensus 402 ~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~ 462 (944)
...|++++|++.++++++++|++..+++.+|.++...|++++|...++++++..|+++.+.
T Consensus 404 ~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 404 QARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred HhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 8888888888888888888888877888888888888888888888888888888776443
No 18
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.97 E-value=3.6e-27 Score=264.69 Aligned_cols=417 Identities=18% Similarity=0.187 Sum_probs=311.8
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGN-VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (944)
.++.++.+|+.+..+|+|++|..+|.++++.++++ .-.++.+|..++..|+++.|+.+|+++++..|++.+....+|.+
T Consensus 306 ~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~L 385 (1018)
T KOG2002|consen 306 KAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCL 385 (1018)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhH
Confidence 44556666666666666666666666666666655 55566666666666666666666666666666666666666666
Q ss_pred HHHcC----CHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-----CCCCHHHHHH
Q 002273 126 YKDEG----RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI-----DPHYAPAYYN 196 (944)
Q Consensus 126 ~~~~g----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~ 196 (944)
|...+ ..++|..+..++++..|.+.+++..++ .++ .+++...++..|..|+.. .+--++.+.+
T Consensus 386 ya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~la-------ql~-e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNN 457 (1018)
T KOG2002|consen 386 YAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELA-------QLL-EQTDPWASLDAYGNALDILESKGKQIPPEVLNN 457 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHH-------HHH-HhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHh
Confidence 65554 445566666666666666555533333 333 235555568888877744 3344778889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-----CCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 002273 197 LGVVYSELMQYDTALGCYEKAALE-----RPM-----YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266 (944)
Q Consensus 197 la~~~~~~g~~~~A~~~~~~al~~-----~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 266 (944)
+|..++..|++.+|...|.+++.. +++ +....+++|.++...++++.|.+.|+.+++.+|.+..++..++
T Consensus 458 vaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~ 537 (1018)
T KOG2002|consen 458 VASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLG 537 (1018)
T ss_pred HHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhh
Confidence 999999999999999999988765 222 2346788999999999999999999999999999999888887
Q ss_pred HHHHHhhhhhhhhHHHHH----hhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH-----
Q 002273 267 IALTDLGTKTYGRALLLF----RLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNW--HYADAMYNLGVAYGE----- 335 (944)
Q Consensus 267 ~~l~~~~~~~~~~a~~~~----~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~----- 335 (944)
......+....+...... ...++...+.++.++....++..|.+-|+..++... .++.+...||++++.
T Consensus 538 ~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~ 617 (1018)
T KOG2002|consen 538 CMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNP 617 (1018)
T ss_pred HHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhccc
Confidence 554444443333222222 223333444556678888888888887777765432 456778888887764
Q ss_pred -------cCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 002273 336 -------MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMD 408 (944)
Q Consensus 336 -------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 408 (944)
.+.+++|++.|.++++.+|.+..+-+.+|.++...|++.+|+.+|.++.+...++.++|.|+|.||..+|+|-
T Consensus 618 ~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~ 697 (1018)
T KOG2002|consen 618 SRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYR 697 (1018)
T ss_pred ccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHH
Confidence 3457899999999999999999999999999999999999999999999988888999999999999999999
Q ss_pred HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhhHHHHhhh
Q 002273 409 AAAEMIEKAIAAN--PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNY 471 (944)
Q Consensus 409 ~A~~~l~~al~~~--p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~~~~~~~ 471 (944)
.|++.|+.+++.. .++.+++..||+++...|.+.+|.++..+++.+.|.++....|+.+.+.-
T Consensus 698 ~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kk 762 (1018)
T KOG2002|consen 698 LAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKK 762 (1018)
T ss_pred HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHH
Confidence 9999999999874 46689999999999999999999999999999999999999998765543
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.96 E-value=1.4e-25 Score=272.15 Aligned_cols=410 Identities=13% Similarity=0.049 Sum_probs=333.7
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 002273 68 LALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADP 147 (944)
Q Consensus 68 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 147 (944)
+.++++ -...|-++........+....|+.++|++.+.++...+|....++..+|.++...|++++|+..|+++++.+|
T Consensus 2 ~~~~~~-~~~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P 80 (765)
T PRK10049 2 LSWLRQ-ALKSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP 80 (765)
T ss_pred chhhhh-hhccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 455666 5567778888888889999999999999999999998999999999999999999999999999999999999
Q ss_pred CChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 002273 148 SYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEA 227 (944)
Q Consensus 148 ~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 227 (944)
.+..+ +..++.++...|++++|+..++++++.+|++.. +..+|.++...|++++|+..++++++..|++..+
T Consensus 81 ~~~~a-------~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~ 152 (765)
T PRK10049 81 QNDDY-------QRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQY 152 (765)
T ss_pred CCHHH-------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 99775 567778888899999999999999999999999 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-----HHHHHHHHHHHhhhh---hh---hhHHHHH---h---hcCCC
Q 002273 228 YCNMGVIYKNRGDLESAIACYERCLAVSPNFEI-----AKNNMAIALTDLGTK---TY---GRALLLF---R---LNGSN 290 (944)
Q Consensus 228 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~la~~l~~~~~~---~~---~~a~~~~---~---~~~~~ 290 (944)
+..++.++...+..++|++.++++.. .|+... ....+.......... .+ .+++..+ . ...+.
T Consensus 153 ~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~ 231 (765)
T PRK10049 153 PTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPD 231 (765)
T ss_pred HHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCc
Confidence 99999999999999999999998776 554211 111111111110000 01 1111111 1 11111
Q ss_pred CCchh-------HHHhhhcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC----HH
Q 002273 291 FQSPF-------FELVKLEGDINQGVAYYKKALYYNWHYA-DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC----AE 358 (944)
Q Consensus 291 ~~~~~-------~~l~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~ 358 (944)
....+ ...+...+++++|+..|+++++..+..+ .+...+|.+|...|++++|+..|+++++.+|.+ ..
T Consensus 232 ~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~ 311 (765)
T PRK10049 232 ATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDE 311 (765)
T ss_pred cchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChH
Confidence 11111 1234577999999999999998864422 344457999999999999999999999988765 45
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002273 359 ACNNLGVIYKDRDNLDKAVECYQMALSIKPN---------------FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 423 (944)
Q Consensus 359 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 423 (944)
....++.++.+.|++++|++.++++.+..|. ...++..++.++...|++++|++.+++++...|+
T Consensus 312 ~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~ 391 (765)
T PRK10049 312 ELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG 391 (765)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 6778888899999999999999999998763 2457789999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhhHHHHhhhccCCChHHHHHHHHHHHH
Q 002273 424 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGK 489 (944)
Q Consensus 424 ~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (944)
+..++..+|.++...|++++|++.++++++++|++..+... .++.++..++.+++....++..+
T Consensus 392 n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~--~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 392 NQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVE--QAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHH--HHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999887765 45567777777777666655543
No 20
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=9.2e-25 Score=232.06 Aligned_cols=390 Identities=21% Similarity=0.230 Sum_probs=322.7
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 002273 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKD 128 (944)
Q Consensus 49 ~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 128 (944)
...-.+++..+..|+|+.|+.+|.+++.++|.|...+.+...+|..+|+|++|++.-.+.++++|+.+..|..+|..+.-
T Consensus 3 ~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~ 82 (539)
T KOG0548|consen 3 VELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFG 82 (539)
T ss_pred hHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHh
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHH---------HHH-cCC-------hHHHHHHHHHHHhhCCCC-
Q 002273 129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTS---------LKL-AGN-------TQDGIQKYYEALKIDPHY- 190 (944)
Q Consensus 129 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~---------~~~-~g~-------~~~A~~~~~~al~~~p~~- 190 (944)
+|+|++|+..|.+.++.+|++......++.++...... +.. .++ .+.+.....+.++.+|.+
T Consensus 83 lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l 162 (539)
T KOG0548|consen 83 LGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSL 162 (539)
T ss_pred cccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhh
Confidence 99999999999999999999988777776665211000 000 000 001111111111111100
Q ss_pred -------------------------------------------------------------HHHHHHHHHHHHHcCCHHH
Q 002273 191 -------------------------------------------------------------APAYYNLGVVYSELMQYDT 209 (944)
Q Consensus 191 -------------------------------------------------------------~~~~~~la~~~~~~g~~~~ 209 (944)
......+|...+...++..
T Consensus 163 ~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~ 242 (539)
T KOG0548|consen 163 KLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFET 242 (539)
T ss_pred hcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHH
Confidence 2234567888888889999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCC
Q 002273 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGS 289 (944)
Q Consensus 210 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~ 289 (944)
|++.|.++++++ .+...+.+.+-+|+..|.+.+.+....++++.......-+..++.++..+|..
T Consensus 243 a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a-------------- 307 (539)
T KOG0548|consen 243 AIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNA-------------- 307 (539)
T ss_pred HHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhh--------------
Confidence 999999999998 77888888999999999999999888888887766666666677777666655
Q ss_pred CCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002273 290 NFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 369 (944)
Q Consensus 290 ~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 369 (944)
+...++++.++.+|++++..... ..+.......++++...+...-++|.-..--...|..++.
T Consensus 308 ---------~~k~~~~~~ai~~~~kaLte~Rt--------~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk 370 (539)
T KOG0548|consen 308 ---------YTKREDYEGAIKYYQKALTEHRT--------PDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFK 370 (539)
T ss_pred ---------hhhHHhHHHHHHHHHHHhhhhcC--------HHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHh
Confidence 66778999999999998876544 5566677788888888888888899888888888999999
Q ss_pred CCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002273 370 RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYE 449 (944)
Q Consensus 370 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~ 449 (944)
.|+|.+|+..|.++++.+|+++..|.|.|.||.++|++..|+...+++++++|+...+|...|.++..+.+|++|.+.|+
T Consensus 371 ~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ 450 (539)
T KOG0548|consen 371 KGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQ 450 (539)
T ss_pred ccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCChhhhhhHHHHhh
Q 002273 450 QCLKIDPDSRNAGQNRLLAMN 470 (944)
Q Consensus 450 ~al~l~P~~~~a~~~~~~~~~ 470 (944)
++++.+|++.++.....-++.
T Consensus 451 eale~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 451 EALELDPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHhcCchhHHHHHHHHHHHH
Confidence 999999999887665444433
No 21
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=9.7e-24 Score=255.38 Aligned_cols=266 Identities=12% Similarity=0.040 Sum_probs=155.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 002273 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239 (944)
Q Consensus 160 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 239 (944)
+..+|.++.. ++..+|+..+.+++...|++. ....+|.++...|++++|+..|+++....|. ...+..+|.++...|
T Consensus 480 ~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~-~~a~~~la~all~~G 556 (987)
T PRK09782 480 WNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVEDYATALAAWQKISLHDMS-NEDLLAAANTAQAAG 556 (987)
T ss_pred HHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCCHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHCC
Confidence 4444444443 444445555555555554432 2333344444555555555555554443333 223344455555555
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhC
Q 002273 240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYN 319 (944)
Q Consensus 240 ~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~ 319 (944)
++++|+.+|+++++..|++......++.. ....|++++|+..|+++++.+
T Consensus 557 d~~eA~~~l~qAL~l~P~~~~l~~~La~~------------------------------l~~~Gr~~eAl~~~~~AL~l~ 606 (987)
T PRK09782 557 NGAARDRWLQQAEQRGLGDNALYWWLHAQ------------------------------RYIPGQPELALNDLTRSLNIA 606 (987)
T ss_pred CHHHHHHHHHHHHhcCCccHHHHHHHHHH------------------------------HHhCCCHHHHHHHHHHHHHhC
Confidence 55555555555555544443322221111 122356666666677666666
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 002273 320 WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 399 (944)
Q Consensus 320 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 399 (944)
|+ ..++..+|.++.+.|++++|+..|++++.++|+++.++.++|.++...|++++|++.|+++++.+|+++.+++++|.
T Consensus 607 P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~ 685 (987)
T PRK09782 607 PS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAY 685 (987)
T ss_pred CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 64 66666666666666777777777777766666666666666666666666677777777776666666666667777
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 002273 400 VYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 459 (944)
Q Consensus 400 ~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~ 459 (944)
++..+|++++|+..|+++++++|++..+....|.+.....+++.|.+.++++..++|+..
T Consensus 686 al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~ 745 (987)
T PRK09782 686 VNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS 745 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch
Confidence 776677777777777777666666666666666666666666666666666666666654
No 22
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=3.8e-24 Score=223.22 Aligned_cols=362 Identities=20% Similarity=0.213 Sum_probs=289.6
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHH
Q 002273 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTD 162 (944)
Q Consensus 83 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 162 (944)
..+-..|+-++..|+|++|+++|.+++++.|+.+..|.+++.||...|++++.++...++++++|++..+ ++.
T Consensus 116 ~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KA-------l~R 188 (606)
T KOG0547|consen 116 AALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKA-------LLR 188 (606)
T ss_pred HHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHH-------HHH
Confidence 4556778889999999999999999999999999999999999999999999999999999999998776 445
Q ss_pred HHHHHHHcCChHHHHHHH------------------HHHHhh--------------CCCCHH-----HH-----------
Q 002273 163 LGTSLKLAGNTQDGIQKY------------------YEALKI--------------DPHYAP-----AY----------- 194 (944)
Q Consensus 163 lg~~~~~~g~~~~A~~~~------------------~~al~~--------------~p~~~~-----~~----------- 194 (944)
.+..+...|++.+|+.-. ++.++. .|.-+. .+
T Consensus 189 RA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~ 268 (606)
T KOG0547|consen 189 RASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPL 268 (606)
T ss_pred HHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccccc
Confidence 555555556665555322 111111 111100 00
Q ss_pred ---------HHHHH--HHHHc---CCHHHHHHHHHHHHHhC----CCC---------HHHHHHHHHHHHHcCCHHHHHHH
Q 002273 195 ---------YNLGV--VYSEL---MQYDTALGCYEKAALER----PMY---------AEAYCNMGVIYKNRGDLESAIAC 247 (944)
Q Consensus 195 ---------~~la~--~~~~~---g~~~~A~~~~~~al~~~----p~~---------~~~~~~la~~~~~~g~~~~A~~~ 247 (944)
-.+.. -+... ..|.+|...+.+..... ..+ ..++...|..++-.|++..|.+.
T Consensus 269 ~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d 348 (606)
T KOG0547|consen 269 FDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQED 348 (606)
T ss_pred ccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhh
Confidence 01111 11111 24666666666554321 112 56788889999999999999999
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 002273 248 YERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMY 327 (944)
Q Consensus 248 ~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 327 (944)
|++++.++|.+...+..++.+|.+..+. ++....|.++..++|+++++|+
T Consensus 349 ~~~~I~l~~~~~~lyI~~a~~y~d~~~~------------------------------~~~~~~F~~A~~ldp~n~dvYy 398 (606)
T KOG0547|consen 349 FDAAIKLDPAFNSLYIKRAAAYADENQS------------------------------EKMWKDFNKAEDLDPENPDVYY 398 (606)
T ss_pred HHHHHhcCcccchHHHHHHHHHhhhhcc------------------------------HHHHHHHHHHHhcCCCCCchhH
Confidence 9999999999988888888887776655 8999999999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 002273 328 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM 407 (944)
Q Consensus 328 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 407 (944)
..|.+++-++++++|+..|++++.++|++...+..++.+.+++++++++...|+.+.+..|+.++++...|.++..++++
T Consensus 399 HRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqF 478 (606)
T KOG0547|consen 399 HRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQF 478 (606)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCC------CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCChhhhhhHHHHhhhccCCChHHH
Q 002273 408 DAAAEMIEKAIAANPT------YAEAYNNLGVLYR-DAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKL 480 (944)
Q Consensus 408 ~~A~~~l~~al~~~p~------~~~a~~~la~~~~-~~g~~~eA~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~ 480 (944)
++|++.|.+++++.|. ++..+...|.+.. -.+++..|++.+++|++++|....++..+ +..-+..+.-+++
T Consensus 479 d~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tl--aq~~lQ~~~i~eA 556 (606)
T KOG0547|consen 479 DKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETL--AQFELQRGKIDEA 556 (606)
T ss_pred HHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHH--HHHHHHHhhHHHH
Confidence 9999999999999998 5554544444332 34899999999999999999999888763 3344455555554
Q ss_pred HHH
Q 002273 481 FEA 483 (944)
Q Consensus 481 ~~~ 483 (944)
++.
T Consensus 557 iel 559 (606)
T KOG0547|consen 557 IEL 559 (606)
T ss_pred HHH
Confidence 443
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.94 E-value=1e-22 Score=241.65 Aligned_cols=414 Identities=12% Similarity=0.020 Sum_probs=258.3
Q ss_pred CCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 002273 43 LKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC 122 (944)
Q Consensus 43 ~~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 122 (944)
..|..++..+..+.+.+++|++..|+..|+++++.+|.++.+...++.++...|+.++|+..+++++...|.....+..+
T Consensus 29 ~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llal 108 (822)
T PRK14574 29 VNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASA 108 (822)
T ss_pred cCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHH
Confidence 34457789999999999999999999999999999999965555888888999999999999999994444555555666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 002273 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYS 202 (944)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 202 (944)
|.++..+|++++|++.|+++++.+|++... +..++..+...++.++|++.++++...+|.+... ..++.++.
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP~n~~~-------l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~ 180 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDPTNPDL-------ISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNR 180 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHH-------HHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHH
Confidence 889999999999999999999999999775 4456777888899999999999999999985554 56666776
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH--HHHHHhhh------
Q 002273 203 ELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA--IALTDLGT------ 274 (944)
Q Consensus 203 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la--~~l~~~~~------ 274 (944)
..++..+|++.++++++.+|++.+++..+..++...|-...|.+..++--.........+.... .-..+.+.
T Consensus 181 ~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~ 260 (822)
T PRK14574 181 ATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSE 260 (822)
T ss_pred hcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccc
Confidence 6788878999999999999999999999999999988888887765542211111111111000 00000000
Q ss_pred ---h-hhhhHHHHHh--h----cCCCCCc-------hhHHHhhhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Q 002273 275 ---K-TYGRALLLFR--L----NGSNFQS-------PFFELVKLEGDINQGVAYYKKALYYN-WHYADAMYNLGVAYGEM 336 (944)
Q Consensus 275 ---~-~~~~a~~~~~--~----~~~~~~~-------~~~~l~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 336 (944)
. ....++.... . ..+.... .....+...+++.++++.|+.+.... +--..+....|..|...
T Consensus 261 ~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~ 340 (822)
T PRK14574 261 TERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDR 340 (822)
T ss_pred hhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhc
Confidence 0 0000000000 0 0011101 11223344455555555555544332 11233444455555555
Q ss_pred CChHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC---------------CCHHHHH
Q 002273 337 LKFDMAIVFYELAFHFNP------HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP---------------NFSQSLN 395 (944)
Q Consensus 337 g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---------------~~~~~~~ 395 (944)
++.++|+.+|++++.-.+ ........|...|...+++++|..++++..+..| +..++..
T Consensus 341 ~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~ 420 (822)
T PRK14574 341 RLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQT 420 (822)
T ss_pred CCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHH
Confidence 555555555555544331 1222234444455555555555555555544222 2233444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhh
Q 002273 396 NLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 464 (944)
Q Consensus 396 ~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~ 464 (944)
.++.++...|++.+|++.+++.+...|.+..++..+|.++...|++.+|++.++.++.++|++..+...
T Consensus 421 l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~ 489 (822)
T PRK14574 421 LLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERA 489 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHH
Confidence 455555555555555555555555555555555555555555555555555555555555555444443
No 24
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=4.2e-23 Score=214.35 Aligned_cols=367 Identities=17% Similarity=0.162 Sum_probs=262.6
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC--CCHHHHHHHHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDP--QNACAHTHCGI 124 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~ 124 (944)
++--++-.|.++.+.|....|+..|..++...|-+-.+|..++.+... ++........-| .+...-+.++.
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~-------~e~~~~l~~~l~~~~h~M~~~F~~~ 235 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITD-------IEILSILVVGLPSDMHWMKKFFLKK 235 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhch-------HHHHHHHHhcCcccchHHHHHHHHH
Confidence 344455566666666666666666666666666666666666555322 112222222222 22333345566
Q ss_pred HHHHcCCHHHHHHHHHHHHHc-CCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002273 125 LYKDEGRLVEAAESYHKALSA-DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE 203 (944)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 203 (944)
++....+.++++.-++..... .|.+... -...|.+...+.++++|+..|++..+.+|-..+-.-...++++-
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i-------~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv 308 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYI-------KTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHH-------HHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH
Confidence 666666777777777776666 4544332 34455666667788888888888888777766666666666666
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHH
Q 002273 204 LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLL 283 (944)
Q Consensus 204 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~ 283 (944)
.++-.+-.-+.+.+.+++.-.++...-+|..|...++.++|+.+|+++++++|....+|..+|.-+..+.+.
T Consensus 309 ~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt-------- 380 (559)
T KOG1155|consen 309 KNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNT-------- 380 (559)
T ss_pred HhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhccc--------
Confidence 666555555556666777777777778888888888888888888888888888888888877776666554
Q ss_pred HhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 002273 284 FRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNL 363 (944)
Q Consensus 284 ~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 363 (944)
..|++.|+++++++|.+-.+|+.+|.+|.-++...=|+-+|+++++..|+++..|..|
T Consensus 381 ----------------------~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aL 438 (559)
T KOG1155|consen 381 ----------------------HAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVAL 438 (559)
T ss_pred ----------------------HHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHH
Confidence 8888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHH
Q 002273 364 GVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA-------ANPTYAEAYNNLGVLYR 436 (944)
Q Consensus 364 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~-------~~p~~~~a~~~la~~~~ 436 (944)
|.||.+.++.++|+++|.+++.....+..++..+|.+|.++++.++|..+|++.++ ..|+...+...|+.-+.
T Consensus 439 G~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~ 518 (559)
T KOG1155|consen 439 GECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFK 518 (559)
T ss_pred HHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHH
Confidence 88888888888888888888888777778888888888888888888888888887 34555667777888888
Q ss_pred HcCCHHHHHHHHHHHHhhCCC
Q 002273 437 DAGSISLAIDAYEQCLKIDPD 457 (944)
Q Consensus 437 ~~g~~~eA~~~~~~al~l~P~ 457 (944)
+.+++++|..+..+++.-++.
T Consensus 519 k~~~~~~As~Ya~~~~~~~~e 539 (559)
T KOG1155|consen 519 KMKDFDEASYYATLVLKGETE 539 (559)
T ss_pred hhcchHHHHHHHHHHhcCCch
Confidence 888888888877777666444
No 25
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=1.6e-24 Score=235.86 Aligned_cols=307 Identities=19% Similarity=0.266 Sum_probs=273.0
Q ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHH
Q 002273 117 CAHTHCGILYKD--EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAY 194 (944)
Q Consensus 117 ~~~~~la~~~~~--~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 194 (944)
..+..+|..|.. +-+..+|+..|++.-...++. +.++.++|..|+.+++|++|.++|+.+-+..|-..+..
T Consensus 318 ~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~nt-------~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~m 390 (638)
T KOG1126|consen 318 ELLRGLGEGYRSLSQYNCREALNLFEKLPSHHYNT-------GWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGM 390 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCCc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccch
Confidence 345556655544 446678999999855555544 34688999999999999999999999999999876666
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhh
Q 002273 195 YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGT 274 (944)
Q Consensus 195 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~ 274 (944)
-....++..+.+--+--.+.+.+++.+|+.++.|..+|.+|..+++++.|+++|+++++++|++..++..+|.-+..
T Consensus 391 eiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~--- 467 (638)
T KOG1126|consen 391 EIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIA--- 467 (638)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhh---
Confidence 66666777776655555566778889999999999999999999999999999999999999988777766654443
Q ss_pred hhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 002273 275 KTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP 354 (944)
Q Consensus 275 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 354 (944)
..++++|..+|+.++..+|.+..+|+.+|.+|.++++++.|.-.|++|++++|
T Consensus 468 ---------------------------~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP 520 (638)
T KOG1126|consen 468 ---------------------------TEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINP 520 (638)
T ss_pred ---------------------------hHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCc
Confidence 45669999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002273 355 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 434 (944)
Q Consensus 355 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~ 434 (944)
.+..+...+|.++.+.|+.++|+.+|++|+.++|.++-..+..|.++..++++++|+..+++..++-|+...+++.+|++
T Consensus 521 ~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki 600 (638)
T KOG1126|consen 521 SNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKI 600 (638)
T ss_pred cchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCChh
Q 002273 435 YRDAGSISLAIDAYEQCLKIDPDSRN 460 (944)
Q Consensus 435 ~~~~g~~~eA~~~~~~al~l~P~~~~ 460 (944)
|.+.|+.+.|+..|.-|+.++|.-.+
T Consensus 601 ~k~~~~~~~Al~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 601 YKRLGNTDLALLHFSWALDLDPKGAQ 626 (638)
T ss_pred HHHHccchHHHHhhHHHhcCCCccch
Confidence 99999999999999999999998655
No 26
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=3.6e-23 Score=220.42 Aligned_cols=388 Identities=20% Similarity=0.232 Sum_probs=315.2
Q ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH------HhcCCCC----
Q 002273 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEA------VKLDPQN---- 115 (944)
Q Consensus 46 ~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a------l~~~p~~---- 115 (944)
.++...+.+|++++-.|+|+.|..+...- +....+....+..+.|+....++++|...+... +..+|.+
T Consensus 47 ~dp~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~ 125 (611)
T KOG1173|consen 47 NDPADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANT 125 (611)
T ss_pred CChHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhce
Confidence 57888999999999999999998887765 455567888899999999999999998888732 1111111
Q ss_pred ---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHH----------------------
Q 002273 116 ---------------ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAI---------------------- 158 (944)
Q Consensus 116 ---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~---------------------- 158 (944)
....+..|.+|..+.+.++|...|.+++..++...++...+..
T Consensus 126 l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~ 205 (611)
T KOG1173|consen 126 LELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLT 205 (611)
T ss_pred eccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhh
Confidence 2345677888999999999999999999888766554333322
Q ss_pred ----------------------------------------HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 002273 159 ----------------------------------------VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLG 198 (944)
Q Consensus 159 ----------------------------------------~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 198 (944)
++...+..++...++.+..+..+..++.+|-+...+-..-
T Consensus 206 ~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~i 285 (611)
T KOG1173|consen 206 KEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHI 285 (611)
T ss_pred hhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHH
Confidence 1122344556666777777777777777777666554444
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhh
Q 002273 199 VVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYG 278 (944)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 278 (944)
-++...|+..+-...-.++++..|+.+-.|+..|..|...|++.+|..+|.++..++|....+|...|..+...+..
T Consensus 286 a~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~Eh--- 362 (611)
T KOG1173|consen 286 ACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEH--- 362 (611)
T ss_pred HHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchH---
Confidence 47777777777666667777777888888888888888888888888888888888888888888888776665544
Q ss_pred hHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHH
Q 002273 279 RALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE 358 (944)
Q Consensus 279 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 358 (944)
++|+..|..+.+..|....-...+|.-|...++++-|.++|.+++.+.|.++-
T Consensus 363 ---------------------------dQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dpl 415 (611)
T KOG1173|consen 363 ---------------------------DQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPL 415 (611)
T ss_pred ---------------------------HHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcch
Confidence 99999999999999998888889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCC-------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 002273 359 ACNNLGVIYKDRDNLDKAVECYQMALSIKP-------NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 431 (944)
Q Consensus 359 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p-------~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~l 431 (944)
++..+|.+.+..+.|.+|+.+|++++..-+ .....+.+||.++.+++++++|+.++++++.+.|.++.++..+
T Consensus 416 v~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asi 495 (611)
T KOG1173|consen 416 VLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASI 495 (611)
T ss_pred hhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHH
Confidence 999999999999999999999999984321 2345789999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhh
Q 002273 432 GVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 464 (944)
Q Consensus 432 a~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~ 464 (944)
|.+|..+|+++.|+++|.++|.++|++..+..-
T Consensus 496 g~iy~llgnld~Aid~fhKaL~l~p~n~~~~~l 528 (611)
T KOG1173|consen 496 GYIYHLLGNLDKAIDHFHKALALKPDNIFISEL 528 (611)
T ss_pred HHHHHHhcChHHHHHHHHHHHhcCCccHHHHHH
Confidence 999999999999999999999999999665543
No 27
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.3e-22 Score=208.94 Aligned_cols=390 Identities=20% Similarity=0.172 Sum_probs=300.1
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH-------------------HHHHHHHHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMG-------------------RLAFDSFSE 107 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-------------------~~A~~~~~~ 107 (944)
.....+.+|..++....|+.|.-.++.... ....+..-.+.+..|.. ...+..+.+
T Consensus 77 ~~~~~y~laks~fd~kEf~Raa~fL~~~~s-----~k~~FL~lysk~La~~kk~~e~~~~~l~~~~~~~~~~~~l~~L~~ 151 (559)
T KOG1155|consen 77 LEKDIYLLAKSYFDCKEFERAAFFLQNCKS-----KKSAFLRLYSKYLAGEKKSEEEMAELLGRLESFSRINSELIELNK 151 (559)
T ss_pred hhcchhhhHhhhhhhHHHHHHHHHHHhcch-----HHHHHHHHHHHHHhhhHHHHHHHHHhhccchhhhhhhhHHHHHhh
Confidence 345678899999999999999888887644 22222222222222211 112222222
Q ss_pred HHhc----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002273 108 AVKL----DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEA 183 (944)
Q Consensus 108 al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~a 183 (944)
-++. ...++..++..|.++.+.|...+|+..+..++...|-+..+|..+..+.... +.....
T Consensus 152 ~le~~~~~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~--------------e~~~~l 217 (559)
T KOG1155|consen 152 PLESKHCGGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDI--------------EILSIL 217 (559)
T ss_pred HHHHHHhcccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchH--------------HHHHHH
Confidence 2221 2345778899999999999999999999999999999988866554433221 122222
Q ss_pred HhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 002273 184 LKIDP--HYAPAYYNLGVVYSELMQYDTALGCYEKAALE-RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI 260 (944)
Q Consensus 184 l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 260 (944)
...-| .+.-.-+.++.++....+.++++.-++..... .|.+...-...|.+...+.++++|+..|+...+.+|-...
T Consensus 218 ~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~ 297 (559)
T KOG1155|consen 218 VVGLPSDMHWMKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLD 297 (559)
T ss_pred HhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcch
Confidence 21223 33444566788888888889999888888887 7888888888899999999999999999999998886554
Q ss_pred HHHHHHHHHHHhhhhh----hhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 002273 261 AKNNMAIALTDLGTKT----YGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM 336 (944)
Q Consensus 261 ~~~~la~~l~~~~~~~----~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 336 (944)
-.-.+..++.-..... .+..+.......+..-.-++..|...++.++|+.+|+++++++|....+|..+|.-|..+
T Consensus 298 dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEm 377 (559)
T KOG1155|consen 298 DMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEM 377 (559)
T ss_pred hHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHh
Confidence 4444444443333211 111111112222333334666777888999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002273 337 LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEK 416 (944)
Q Consensus 337 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~ 416 (944)
++...|++.|++|++++|.+..+|+.+|+.|.-++...=|+-+|++|.+..|+++..|..||.||.++++.++|+++|.+
T Consensus 378 KNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykr 457 (559)
T KOG1155|consen 378 KNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKR 457 (559)
T ss_pred cccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 002273 417 AIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 455 (944)
Q Consensus 417 al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~ 455 (944)
++.....+..++..||.+|.++++.++|..+|++.++..
T Consensus 458 ai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~ 496 (559)
T KOG1155|consen 458 AILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS 496 (559)
T ss_pred HHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 999998889999999999999999999999999999843
No 28
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=2.8e-24 Score=233.96 Aligned_cols=296 Identities=19% Similarity=0.204 Sum_probs=229.8
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCCh
Q 002273 94 MQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT 173 (944)
Q Consensus 94 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~ 173 (944)
.+-+..+|+..|.+.-+..++...++..+|..|+++++|++|..+|+.+-+..|-..+....+..++..+ .+-
T Consensus 331 s~y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHL-------q~~ 403 (638)
T KOG1126|consen 331 SQYNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHL-------QDE 403 (638)
T ss_pred HHHHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHH-------Hhh
Confidence 3445567777777755666666777777777777777777777777777777776655544444444443 222
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002273 174 QDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA 253 (944)
Q Consensus 174 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 253 (944)
-+---+.+..++.+|+.++.|..+|++|.-+++++.|+++|+++++++|....+|..+|.=+....++++|..+|++++.
T Consensus 404 v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~ 483 (638)
T KOG1126|consen 404 VALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG 483 (638)
T ss_pred HHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc
Confidence 22223345566677888888888888888888888888888888888888788888888888888888888888888888
Q ss_pred hCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002273 254 VSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY 333 (944)
Q Consensus 254 ~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 333 (944)
.+|.+..+|+.+|.+|.+.++. +.|.-.|++|++++|.+..+...+|.++
T Consensus 484 ~~~rhYnAwYGlG~vy~Kqek~------------------------------e~Ae~~fqkA~~INP~nsvi~~~~g~~~ 533 (638)
T KOG1126|consen 484 VDPRHYNAWYGLGTVYLKQEKL------------------------------EFAEFHFQKAVEINPSNSVILCHIGRIQ 533 (638)
T ss_pred CCchhhHHHHhhhhheeccchh------------------------------hHHHHHHHhhhcCCccchhHHhhhhHHH
Confidence 8888888888888888765543 7788888888888888888888888888
Q ss_pred HHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002273 334 GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEM 413 (944)
Q Consensus 334 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 413 (944)
.+.|+.++|+.+|++|+.++|.++-..+..|.++...+++++|+..+++..++-|+...+++.+|.+|.+.|+.+.|+..
T Consensus 534 ~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~ 613 (638)
T KOG1126|consen 534 HQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLH 613 (638)
T ss_pred HHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHh
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHhCCCCHH
Q 002273 414 IEKAIAANPTYAE 426 (944)
Q Consensus 414 l~~al~~~p~~~~ 426 (944)
|.-|.+++|.-..
T Consensus 614 f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 614 FSWALDLDPKGAQ 626 (638)
T ss_pred hHHHhcCCCccch
Confidence 8888888886544
No 29
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.93 E-value=1.4e-22 Score=202.23 Aligned_cols=334 Identities=20% Similarity=0.222 Sum_probs=262.1
Q ss_pred CCCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 002273 42 TLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTH 121 (944)
Q Consensus 42 ~~~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 121 (944)
+..+.+++..+.+|..++.+|++.+|+..|..+++.+|++..+++..|.+|+.+|+-.-|+..+.+++++.|+...+...
T Consensus 32 ~~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQ 111 (504)
T KOG0624|consen 32 TASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQ 111 (504)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHH
Confidence 45556889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHh---HHHH-----HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHH
Q 002273 122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAE---CLAI-----VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA 193 (944)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~---~la~-----~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 193 (944)
.|.+++++|++++|...|+++++.+|++..... .++. .+......+...|+...|+......+++.|-++..
T Consensus 112 Rg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l 191 (504)
T KOG0624|consen 112 RGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASL 191 (504)
T ss_pred hchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHH
Confidence 999999999999999999999999997554322 2221 23445556777899999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhh
Q 002273 194 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273 (944)
Q Consensus 194 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~ 273 (944)
+...+.+|...|+..+|+..++.+-++..++.+.++.++.+++..|+.+.++...+.+++++|++...+-.+-. +.
T Consensus 192 ~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKk----lk 267 (504)
T KOG0624|consen 192 RQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKK----LK 267 (504)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHH----HH
Confidence 99999999999999999999999999999999999999999999999999999999999999997654322211 11
Q ss_pred hhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCChHHHHHHHHHH
Q 002273 274 TKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYAD----AMYNLGVAYGEMLKFDMAIVFYELA 349 (944)
Q Consensus 274 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~a 349 (944)
+. .+.+. -..-....++|.++++..++.++.+|..+. ....+..++...+++-+|+..+.++
T Consensus 268 Kv--~K~le------------s~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ev 333 (504)
T KOG0624|consen 268 KV--VKSLE------------SAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEV 333 (504)
T ss_pred HH--HHHHH------------HHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHH
Confidence 00 00000 001133455666666666666666665332 3334455566666666666666666
Q ss_pred HhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHH
Q 002273 350 FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQS 393 (944)
Q Consensus 350 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 393 (944)
+.++|++..++...+..|+....|+.|+..|++|.+.++++..+
T Consensus 334 L~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 334 LDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred HhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence 66666666666666666666666666666666666666665443
No 30
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.92 E-value=2e-21 Score=230.78 Aligned_cols=396 Identities=13% Similarity=0.020 Sum_probs=313.5
Q ss_pred HHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHh
Q 002273 75 LEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAE 154 (944)
Q Consensus 75 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 154 (944)
.-..|..+...+..+.+..+.|+++.|+..|+++++.+|+++.+...+..++...|+.++|+.++++++ +|.+....
T Consensus 27 ~~~~p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n~~~~- 103 (822)
T PRK14574 27 FVVNPAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNISSR- 103 (822)
T ss_pred cccCccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCCCHH-
Confidence 446788999999999999999999999999999999999996554488889999999999999999999 55444431
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002273 155 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234 (944)
Q Consensus 155 ~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 234 (944)
.+..+|.++...|++++|++.|+++++.+|+++.++..++.++...++.++|++.++++...+|.+... ..++.+
T Consensus 104 ----~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL 178 (822)
T PRK14574 104 ----GLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYL 178 (822)
T ss_pred ----HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHH
Confidence 244457788899999999999999999999999999999999999999999999999999999985554 566777
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCc---------hhHHHhh-----
Q 002273 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQS---------PFFELVK----- 300 (944)
Q Consensus 235 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~---------~~~~l~~----- 300 (944)
+...++..+|++.++++++.+|++...+..+..++...|....+..+..... .-+.. ..+....
T Consensus 179 ~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p--~~f~~~~~~~l~~~~~a~~vr~a~~~ 256 (822)
T PRK14574 179 NRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENP--NLVSAEHYRQLERDAAAEQVRMAVLP 256 (822)
T ss_pred HHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc--cccCHHHHHHHHHHHHHHHHhhcccc
Confidence 7678888789999999999999999999999999988887644443332211 11100 0011110
Q ss_pred ---hcC---CHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Q 002273 301 ---LEG---DINQGVAYYKKALYYNWHY-------ADAMYNLGVAYGEMLKFDMAIVFYELAFHFN-PHCAEACNNLGVI 366 (944)
Q Consensus 301 ---~~~---~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 366 (944)
... -.+.|+..++..+...+.. ..+....-.++...|++.++++.|+.+.... +--..+....|..
T Consensus 257 ~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ada 336 (822)
T PRK14574 257 TRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASA 336 (822)
T ss_pred cccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHH
Confidence 011 2356777788877743332 2345566678889999999999999987665 3345688889999
Q ss_pred HHHCCCHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------CCH
Q 002273 367 YKDRDNLDKAVECYQMALSIKP------NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP---------------TYA 425 (944)
Q Consensus 367 ~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p---------------~~~ 425 (944)
|...++.++|+.+|++++.-.+ ........|...|...+++++|..++++..+..| +..
T Consensus 337 yl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~ 416 (822)
T PRK14574 337 YIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWI 416 (822)
T ss_pred HHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHH
Confidence 9999999999999999988653 2333457888899999999999999999998443 446
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhhHHHHhhhccCCChHHHHH
Q 002273 426 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFE 482 (944)
Q Consensus 426 ~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~ 482 (944)
++...++.++...|++.+|.+.+++.+...|.|...... .+-.+...|.+..+.+
T Consensus 417 ~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~--~A~v~~~Rg~p~~A~~ 471 (822)
T PRK14574 417 EGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIA--LASIYLARDLPRKAEQ 471 (822)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHhcCCHHHHHH
Confidence 888899999999999999999999999999999887765 3445555555554443
No 31
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=3.2e-22 Score=226.73 Aligned_cols=323 Identities=17% Similarity=0.164 Sum_probs=265.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHH
Q 002273 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY----AEAYCNMGVIY 235 (944)
Q Consensus 160 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~ 235 (944)
.+..|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...+.. ...+..+|.+|
T Consensus 38 ~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~ 117 (389)
T PRK11788 38 DYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDY 117 (389)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 45567888899999999999999999999999999999999999999999999999998854332 35788999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHH
Q 002273 236 KNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKA 315 (944)
Q Consensus 236 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~a 315 (944)
...|++++|+..|+++++..|.+..++..++.++.. .|++++|++.++++
T Consensus 118 ~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~------------------------------~g~~~~A~~~~~~~ 167 (389)
T PRK11788 118 LKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQ------------------------------EKDWQKAIDVAERL 167 (389)
T ss_pred HHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH------------------------------hchHHHHHHHHHHH
Confidence 999999999999999999988888888877776655 45669999999999
Q ss_pred HHhCCCCH-----HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCC
Q 002273 316 LYYNWHYA-----DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF 390 (944)
Q Consensus 316 l~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 390 (944)
++..|.+. ..+..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|++.++++++.+|.+
T Consensus 168 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~ 247 (389)
T PRK11788 168 EKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEY 247 (389)
T ss_pred HHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence 99887653 3567899999999999999999999999999999999999999999999999999999999998876
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhhHHHHh
Q 002273 391 -SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAM 469 (944)
Q Consensus 391 -~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~~~~~ 469 (944)
..++..++.+|...|++++|+..++++++..|+... +..++.++.+.|++++|+..++++++.+|++..........+
T Consensus 248 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~ 326 (389)
T PRK11788 248 LSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHL 326 (389)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhh
Confidence 467889999999999999999999999999998654 489999999999999999999999999999875442211111
Q ss_pred hhccCCChHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCcEEEeecCCCccC
Q 002273 470 NYINEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTH 523 (944)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lriGy~S~d~~~h 523 (944)
.....|...+.+...+++.++... +.|. ...-.+|+++..+..+
T Consensus 327 ~~~~~g~~~~a~~~~~~~~~~~~~---~~p~-------~~c~~cg~~~~~~~~~ 370 (389)
T PRK11788 327 AEAEEGRAKESLLLLRDLVGEQLK---RKPR-------YRCRNCGFTARTLYWH 370 (389)
T ss_pred hccCCccchhHHHHHHHHHHHHHh---CCCC-------EECCCCCCCCccceeE
Confidence 121244555666555544433322 2122 2344566666655443
No 32
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.92 E-value=6.8e-22 Score=224.02 Aligned_cols=304 Identities=19% Similarity=0.205 Sum_probs=234.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHH
Q 002273 82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLT 161 (944)
Q Consensus 82 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 161 (944)
....+.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...+.... ....++.
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~---~~~~~~~ 111 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTRE---QRLLALQ 111 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHH---HHHHHHH
Confidence 4456667888888899999999999999999988888999999999999999999999888874322211 1234567
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHH
Q 002273 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA-----EAYCNMGVIYK 236 (944)
Q Consensus 162 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~ 236 (944)
.+|.++...|++++|+..|+++++.+|.+..++..++.++...|++++|++.++++++..|.+. ..+..+|.++.
T Consensus 112 ~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 191 (389)
T PRK11788 112 ELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQAL 191 (389)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH
Confidence 7788888888888888888888877777777888888888888888888888888877766542 23445666666
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHH
Q 002273 237 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKAL 316 (944)
Q Consensus 237 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al 316 (944)
..|++++|+..|+++++..|
T Consensus 192 ~~~~~~~A~~~~~~al~~~p------------------------------------------------------------ 211 (389)
T PRK11788 192 ARGDLDAARALLKKALAADP------------------------------------------------------------ 211 (389)
T ss_pred hCCCHHHHHHHHHHHHhHCc------------------------------------------------------------
Confidence 66666666666666655544
Q ss_pred HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHH
Q 002273 317 YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC-AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLN 395 (944)
Q Consensus 317 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 395 (944)
+...++..+|.++...|++++|++.+++++..+|.+ ..++..++.+|...|++++|+..++++++..|+.... .
T Consensus 212 ----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~-~ 286 (389)
T PRK11788 212 ----QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLL-L 286 (389)
T ss_pred ----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHH-H
Confidence 445566777888888888888888888888887766 4567888999999999999999999999999987544 8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHh
Q 002273 396 NLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD--AGSISLAIDAYEQCLK 453 (944)
Q Consensus 396 ~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~--~g~~~eA~~~~~~al~ 453 (944)
.++.++.+.|++++|+..++++++..|++......++..+.. .|+..+|+..+++.++
T Consensus 287 ~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 287 ALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 899999999999999999999999999987655445444422 4588888887776664
No 33
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.92 E-value=1.8e-21 Score=218.12 Aligned_cols=387 Identities=15% Similarity=0.134 Sum_probs=288.5
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (944)
....++..|+.++.+|++++|..++.++++++|.+..+|+.+|.+|.++|+.+++...+-.|-.++|++.+.|..++...
T Consensus 138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls 217 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLS 217 (895)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-----HHHHHHHHHHH
Q 002273 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY-----APAYYNLGVVY 201 (944)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~ 201 (944)
.++|++++|+-+|.++++.+|.+... ......+|.+.|+...|+..|.++++..|.. .......+..+
T Consensus 218 ~~~~~i~qA~~cy~rAI~~~p~n~~~-------~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~ 290 (895)
T KOG2076|consen 218 EQLGNINQARYCYSRAIQANPSNWEL-------IYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYF 290 (895)
T ss_pred HhcccHHHHHHHHHHHHhcCCcchHH-------HHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHH
Confidence 99999999999999999999998765 5666777888899999999999999999832 22334457778
Q ss_pred HHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH-----HHHHHHh
Q 002273 202 SELMQYDTALGCYEKAALER--PMYAEAYCNMGVIYKNRGDLESAIACYERCLAV--SPNFEIAKNNM-----AIALTDL 272 (944)
Q Consensus 202 ~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l-----a~~l~~~ 272 (944)
...++-+.|++.++.++... ....+.+..++.++.....++.|.......... .+++...-..- -..+...
T Consensus 291 ~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~ 370 (895)
T KOG2076|consen 291 ITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEV 370 (895)
T ss_pred HHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccC
Confidence 88888899999999998833 234456778899999999999998887665441 11111100000 0000000
Q ss_pred hhhhhhhHHHHHhhcCCCCCc---hhHHHhhhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 002273 273 GTKTYGRALLLFRLNGSNFQS---PFFELVKLEGDINQGVAYYKKALYYNW-HYADAMYNLGVAYGEMLKFDMAIVFYEL 348 (944)
Q Consensus 273 ~~~~~~~a~~~~~~~~~~~~~---~~~~l~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~ 348 (944)
+. .....+.. .+.-+.....+..+++..+..--...+ +.++.+..++.++...|++.+|+.+|..
T Consensus 371 ~~-----------~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~ 439 (895)
T KOG2076|consen 371 GK-----------ELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSP 439 (895)
T ss_pred CC-----------CCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 00 00000000 001112223334444443332222223 3567888888888888888888888888
Q ss_pred HHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----
Q 002273 349 AFHFNPH-CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT---- 423 (944)
Q Consensus 349 al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~---- 423 (944)
+....+. +..+|+.+|.||..+|.+++|+++|++++...|++.++...|+.++.++|+.++|.+.++....-++.
T Consensus 440 i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~ 519 (895)
T KOG2076|consen 440 ITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEA 519 (895)
T ss_pred HhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhh
Confidence 8876543 36788888888888888888888888888888888888888888888888888888888876633322
Q ss_pred -----CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002273 424 -----YAEAYNNLGVLYRDAGSISLAIDAYEQC 451 (944)
Q Consensus 424 -----~~~a~~~la~~~~~~g~~~eA~~~~~~a 451 (944)
.......+..++...|+.++=+..-...
T Consensus 520 ~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~L 552 (895)
T KOG2076|consen 520 CAWEPERRILAHRCDILFQVGKREEFINTASTL 552 (895)
T ss_pred ccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 2345677778888888887754444333
No 34
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.92 E-value=2e-22 Score=207.36 Aligned_cols=270 Identities=18% Similarity=0.172 Sum_probs=222.3
Q ss_pred HHHHHcCChHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 002273 165 TSLKLAGNTQDGIQKYYEALKIDPHY-APAYYNLGVVYSELM--QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDL 241 (944)
Q Consensus 165 ~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 241 (944)
..+.+.|+++.|++.+.-.-+.+... ..+-.+|..+++.+| ++..|.++...++.++..++.++.+.|.+.+..|++
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcH
Confidence 34556666666666655433333221 223344544444432 566666666677777777777888888888888888
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCC
Q 002273 242 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWH 321 (944)
Q Consensus 242 ~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~ 321 (944)
++|.+.|+.++..+.....+.++++..+.. .|++++|+++|-++-.+--+
T Consensus 507 dka~~~ykeal~ndasc~ealfniglt~e~------------------------------~~~ldeald~f~klh~il~n 556 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFNIGLTAEA------------------------------LGNLDEALDCFLKLHAILLN 556 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHhcccHHH------------------------------hcCHHHHHHHHHHHHHHHHh
Confidence 888888888888877777777777666544 45669999999999888888
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 002273 322 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVY 401 (944)
Q Consensus 322 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 401 (944)
++++++.++.+|..+.+..+|+++|.++..+-|+++.++..||.+|-+.|+-.+|.+++-......|.+.+..-.||..|
T Consensus 557 n~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayy 636 (840)
T KOG2003|consen 557 NAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYY 636 (840)
T ss_pred hHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhh
Q 002273 402 TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 464 (944)
Q Consensus 402 ~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~ 464 (944)
....-+++|+.+|+++--+.|+.......++.|+.+.|+|++|.+.|+..-+..|++.+...-
T Consensus 637 idtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkf 699 (840)
T KOG2003|consen 637 IDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKF 699 (840)
T ss_pred HhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998776543
No 35
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=7.1e-21 Score=203.02 Aligned_cols=437 Identities=17% Similarity=0.122 Sum_probs=339.8
Q ss_pred CCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 002273 43 LKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC 122 (944)
Q Consensus 43 ~~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 122 (944)
.+..+...+..+-+-+..+.+|.-|+-+-+++.... .++.-.+.+|++++..+++..|......- +++..+....+..
T Consensus 11 ~d~~s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~-~dp~d~~~~aq~l~~~~~y~ra~~lit~~-~le~~d~~cryL~ 88 (611)
T KOG1173|consen 11 ADELSLEKYRRLVRDALMQHRYKTALFWADKVAGLT-NDPADIYWLAQVLYLGRQYERAAHLITTY-KLEKRDIACRYLA 88 (611)
T ss_pred cccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc-CChHHHHHHHHHHHhhhHHHHHHHHHHHh-hhhhhhHHHHHHH
Confidence 344566777777778899999999999999998887 78888999999999999999998777654 5667788889999
Q ss_pred HHHHHHcCCHHHHHHHHHHH------HHcCCCC---------hh---HHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002273 123 GILYKDEGRLVEAAESYHKA------LSADPSY---------KP---AAECLAIVLTDLGTSLKLAGNTQDGIQKYYEAL 184 (944)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~a------l~~~p~~---------~~---~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al 184 (944)
+.++....++++|...+... +..++.+ .. .....+.+++..|.+|....+.++|...|.+++
T Consensus 89 ~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al 168 (611)
T KOG1173|consen 89 AKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEAL 168 (611)
T ss_pred HHHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHH
Confidence 99999999999999888732 1112221 11 122334456678899999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHc-----------------CCHHHHHHHHHHHHH----------hC--------CCCHHHHH
Q 002273 185 KIDPHYAPAYYNLGVVYSEL-----------------MQYDTALGCYEKAAL----------ER--------PMYAEAYC 229 (944)
Q Consensus 185 ~~~p~~~~~~~~la~~~~~~-----------------g~~~~A~~~~~~al~----------~~--------p~~~~~~~ 229 (944)
..++.+.++...+-....-. +...+-++.+-++.. .. .++.+...
T Consensus 169 ~~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~ 248 (611)
T KOG1173|consen 169 LADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLA 248 (611)
T ss_pred hcchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHH
Confidence 99988877665543322211 111111111111110 11 13567888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhh--hHHHHHhhcC--CCCCchhHHHhhhcCCH
Q 002273 230 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYG--RALLLFRLNG--SNFQSPFFELVKLEGDI 305 (944)
Q Consensus 230 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~--~a~~~~~~~~--~~~~~~~~~l~~~~~~~ 305 (944)
..+..++..+++.+..+..+..++.+|-+...+....-++..+++...- .........+ .-.+-..+-.|...+++
T Consensus 249 ~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~ 328 (611)
T KOG1173|consen 249 EKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKY 328 (611)
T ss_pred HHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCc
Confidence 8999999999999999999999999998877665544467666654211 1111111111 12222344566677999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 002273 306 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALS 385 (944)
Q Consensus 306 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 385 (944)
.+|..+|.++..++|....+|...|..+...|+.++|+..|..|-++-|....-...+|.-|...++++-|.++|.+|+.
T Consensus 329 seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a 408 (611)
T KOG1173|consen 329 SEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA 408 (611)
T ss_pred HHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999988899999999999999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----C---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002273 386 IKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP----T---YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 458 (944)
Q Consensus 386 ~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p----~---~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~ 458 (944)
+.|.++-++..+|.+.+..+.|.+|..+|++++..-+ + -...+.+||.++.+++.+++|+.+|+++|.+.|.+
T Consensus 409 i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~ 488 (611)
T KOG1173|consen 409 IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD 488 (611)
T ss_pred cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc
Confidence 9999999999999999999999999999999995422 1 23468999999999999999999999999999999
Q ss_pred hhhhhhHHHHhhhccCCChHHHHHH
Q 002273 459 RNAGQNRLLAMNYINEGHDDKLFEA 483 (944)
Q Consensus 459 ~~a~~~~~~~~~~~~~~~~~~~~~~ 483 (944)
..++.. .+..|...|..+.+.+.
T Consensus 489 ~~~~as--ig~iy~llgnld~Aid~ 511 (611)
T KOG1173|consen 489 ASTHAS--IGYIYHLLGNLDKAIDH 511 (611)
T ss_pred hhHHHH--HHHHHHHhcChHHHHHH
Confidence 998877 45556666777666544
No 36
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.90 E-value=2.5e-20 Score=205.62 Aligned_cols=413 Identities=15% Similarity=0.127 Sum_probs=325.1
Q ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCCHHHHHHHH
Q 002273 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD--PQNACAHTHCG 123 (944)
Q Consensus 46 ~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la 123 (944)
+++..+-.+...+...|+|+.+.+.|++++...-...+.|+.++.++...|.-..|+...++..... |.++..+...+
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 4566666778888889999999999999998888888999999999999999999999999999988 77777666665
Q ss_pred H-HHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHc-----------CChHHHHHHHHHHHhhCCCCH
Q 002273 124 I-LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA-----------GNTQDGIQKYYEALKIDPHYA 191 (944)
Q Consensus 124 ~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~-----------g~~~~A~~~~~~al~~~p~~~ 191 (944)
. |+.+.+.+++++.+..+++.... .......+..+..+|.+|..+ ....++++.++++++.+|.++
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~--~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp 478 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLG--GQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDP 478 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhh--hhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 5 45567999999999999998542 222233455566666665432 234689999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 002273 192 PAYYNLGVVYSELMQYDTALGCYEKAALE-RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 270 (944)
Q Consensus 192 ~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~ 270 (944)
.+.+.++.-|..+++.+.|+...+++++. ..+++.+|..++.++...+++.+|+.....++...++|.........+-.
T Consensus 479 ~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~ 558 (799)
T KOG4162|consen 479 LVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIEL 558 (799)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhh
Confidence 99999999999999999999999999999 55678999999999999999999999999999998885443333322222
Q ss_pred HhhhhhhhhHHHH-----Hh------h--cCCCCCchhHHHhhhcCCHHHHHHHHHHHHHh-------------------
Q 002273 271 DLGTKTYGRALLL-----FR------L--NGSNFQSPFFELVKLEGDINQGVAYYKKALYY------------------- 318 (944)
Q Consensus 271 ~~~~~~~~~a~~~-----~~------~--~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~------------------- 318 (944)
.+++......... +. . ...........+.....+..+|++.++++...
T Consensus 559 ~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~ 638 (799)
T KOG4162|consen 559 TFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTV 638 (799)
T ss_pred hcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccc
Confidence 2222211111000 00 0 00000000011111122333333333333221
Q ss_pred --CCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCH
Q 002273 319 --NWHY-----ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS 391 (944)
Q Consensus 319 --~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 391 (944)
.|.. ...|...+..+...++.++|..++.++-+++|..+..|+..|.++...|+.++|.+.|..++.++|+++
T Consensus 639 ~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv 718 (799)
T KOG4162|consen 639 LPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHV 718 (799)
T ss_pred cCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCc
Confidence 1111 246778899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChh
Q 002273 392 QSLNNLGVVYTVQGKMDAAAE--MIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 460 (944)
Q Consensus 392 ~~~~~la~~~~~~g~~~~A~~--~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~ 460 (944)
.+...+|.++.+.|+..-|.. .+..+++++|.++++|+.+|.++.+.|+.++|.++|..++++.+.+|.
T Consensus 719 ~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 719 PSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 999999999999999888888 999999999999999999999999999999999999999999998874
No 37
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.90 E-value=4e-21 Score=191.93 Aligned_cols=327 Identities=16% Similarity=0.162 Sum_probs=238.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHH
Q 002273 78 DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157 (944)
Q Consensus 78 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 157 (944)
+|.+++-++.+|..++..|++..|+..|..+++.+|++..+++..|.+|+.+|+-.-|+..+.+++++.|+...+
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~A----- 108 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAA----- 108 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHH-----
Confidence 456788899999999999999999999999999999999999999999999999999999999999999997665
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH---HHHH------------HHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 002273 158 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA---PAYY------------NLGVVYSELMQYDTALGCYEKAALERP 222 (944)
Q Consensus 158 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~------------~la~~~~~~g~~~~A~~~~~~al~~~p 222 (944)
-...|.++.++|.+++|..-|...++.+|++. +++. .....+...|++..|++...+++++.|
T Consensus 109 --RiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~ 186 (504)
T KOG0624|consen 109 --RIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP 186 (504)
T ss_pred --HHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc
Confidence 56678888899999999999999999999642 2222 233445567899999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhc
Q 002273 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLE 302 (944)
Q Consensus 223 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~ 302 (944)
-++..+...+.+|...|+..+|+.-++.+-++..++.+..+.++.++...|..
T Consensus 187 Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~--------------------------- 239 (504)
T KOG0624|consen 187 WDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDA--------------------------- 239 (504)
T ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhH---------------------------
Confidence 99999999999999999999999999999999999988888888887776654
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 002273 303 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQM 382 (944)
Q Consensus 303 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 382 (944)
+.++...++.++++|++...+-.. .+..+..+.++..+ -..+.++|.++++..++
T Consensus 240 ---~~sL~~iRECLKldpdHK~Cf~~Y----KklkKv~K~les~e------------------~~ie~~~~t~cle~ge~ 294 (504)
T KOG0624|consen 240 ---ENSLKEIRECLKLDPDHKLCFPFY----KKLKKVVKSLESAE------------------QAIEEKHWTECLEAGEK 294 (504)
T ss_pred ---HHHHHHHHHHHccCcchhhHHHHH----HHHHHHHHHHHHHH------------------HHHhhhhHHHHHHHHHH
Confidence 888888888888888865433221 11111111111111 11233455555555555
Q ss_pred HHhhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002273 383 ALSIKPNFSQ----SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 458 (944)
Q Consensus 383 al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~ 458 (944)
.++.+|..+. ....+..|+..-+++.+|+..+.++++.+|++.+++...+.+|.....|+.|+..|++|.+.++++
T Consensus 295 vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 295 VLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESN 374 (504)
T ss_pred HHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccc
Confidence 5555555322 223344455555555555555555555555555555555555555555555555555555555555
Q ss_pred hhhhh
Q 002273 459 RNAGQ 463 (944)
Q Consensus 459 ~~a~~ 463 (944)
..+..
T Consensus 375 ~~~re 379 (504)
T KOG0624|consen 375 TRARE 379 (504)
T ss_pred HHHHH
Confidence 54443
No 38
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.89 E-value=3e-21 Score=198.77 Aligned_cols=248 Identities=20% Similarity=0.161 Sum_probs=229.6
Q ss_pred CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002273 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250 (944)
Q Consensus 171 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 250 (944)
.++..|..+...++..+..++.++.+.|.+.+..|++++|.+.|++++..+..-.++++++|..+..+|+.++|+++|-+
T Consensus 470 k~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~k 549 (840)
T KOG2003|consen 470 KDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLK 549 (840)
T ss_pred cchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999988899999999999999999999999999
Q ss_pred HHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002273 251 CLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLG 330 (944)
Q Consensus 251 al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 330 (944)
.-.+--++......++.+|..+... .+|++++-++...-|+++.++..+|
T Consensus 550 lh~il~nn~evl~qianiye~led~------------------------------aqaie~~~q~~slip~dp~ilskl~ 599 (840)
T KOG2003|consen 550 LHAILLNNAEVLVQIANIYELLEDP------------------------------AQAIELLMQANSLIPNDPAILSKLA 599 (840)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhhCH------------------------------HHHHHHHHHhcccCCCCHHHHHHHH
Confidence 8888788888888888877665544 9999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 002273 331 VAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAA 410 (944)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 410 (944)
.+|-+.|+-.+|.+++-......|-+.+..-.||..|....-+++|+.+|+++.-+.|+.......++.|+.+.|+|.+|
T Consensus 600 dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka 679 (840)
T KOG2003|consen 600 DLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKA 679 (840)
T ss_pred HHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002273 411 AEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYE 449 (944)
Q Consensus 411 ~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~ 449 (944)
.+.|+..-...|++.+.+..|.++.-.+|-. +|.++-.
T Consensus 680 ~d~yk~~hrkfpedldclkflvri~~dlgl~-d~key~~ 717 (840)
T KOG2003|consen 680 FDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK-DAKEYAD 717 (840)
T ss_pred HHHHHHHHHhCccchHHHHHHHHHhccccch-hHHHHHH
Confidence 9999999999999999999999988888753 3444433
No 39
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.89 E-value=1.7e-19 Score=194.17 Aligned_cols=371 Identities=14% Similarity=0.053 Sum_probs=178.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 002273 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDE 129 (944)
Q Consensus 50 ~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 129 (944)
.|+.-|..+.+.+-++-|+.+|..+++..|.....|...+..-..-|..++-..++++++...|.....|.+.+..+...
T Consensus 518 tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~a 597 (913)
T KOG0495|consen 518 TWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKA 597 (913)
T ss_pred HHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhc
Confidence 34444444444455555555555555555544444444444444444444444445555554454444444444444444
Q ss_pred CCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 002273 130 GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDT 209 (944)
Q Consensus 130 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 209 (944)
|+...|...+.++++.+|++.+. ++..-.+.....+++.|..+|.++....|. ..+|+.-+.+...+++.++
T Consensus 598 gdv~~ar~il~~af~~~pnseei-------wlaavKle~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~ee 669 (913)
T KOG0495|consen 598 GDVPAARVILDQAFEANPNSEEI-------WLAAVKLEFENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEE 669 (913)
T ss_pred CCcHHHHHHHHHHHHhCCCcHHH-------HHHHHHHhhccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHH
Confidence 55555555555555555444332 222222333344445555555444443332 3344444444444445555
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCC
Q 002273 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGS 289 (944)
Q Consensus 210 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~ 289 (944)
|+.+++++++..|.....|..+|+++..+++.+.|.+.|...++..|.....|..++.+-..
T Consensus 670 A~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk------------------ 731 (913)
T KOG0495|consen 670 ALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEK------------------ 731 (913)
T ss_pred HHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHH------------------
Confidence 55555555555555555555555555555555555555555555555444444444433222
Q ss_pred CCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002273 290 NFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 369 (944)
Q Consensus 290 ~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 369 (944)
.|..-+|...++++.-.+|++...|.....+-.+.|+.++|...+.++++..|.+...|..-..+.-.
T Consensus 732 ------------~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~ 799 (913)
T KOG0495|consen 732 ------------DGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPR 799 (913)
T ss_pred ------------hcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccC
Confidence 22334555555555555555555555555555555555555555555555555544444433333333
Q ss_pred CCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002273 370 RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYE 449 (944)
Q Consensus 370 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~ 449 (944)
-++-.+++ .|++....++.++...|.++....++++|.++|.++++.+|++.++|..+-..+...|.-++-.+.|.
T Consensus 800 ~~rkTks~----DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~ 875 (913)
T KOG0495|consen 800 PQRKTKSI----DALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLK 875 (913)
T ss_pred cccchHHH----HHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHH
Confidence 33322222 22233344455555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHhhCCCChhhh
Q 002273 450 QCLKIDPDSRNAG 462 (944)
Q Consensus 450 ~al~l~P~~~~a~ 462 (944)
++....|.+...+
T Consensus 876 ~c~~~EP~hG~~W 888 (913)
T KOG0495|consen 876 KCETAEPTHGELW 888 (913)
T ss_pred HHhccCCCCCcHH
Confidence 5555555554433
No 40
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.89 E-value=1.3e-19 Score=203.27 Aligned_cols=365 Identities=15% Similarity=0.121 Sum_probs=268.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHH
Q 002273 82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLT 161 (944)
Q Consensus 82 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 161 (944)
...++..|+.++..|++++|...+.++++++|.++.+|+.||.+|.++|+.+++...+-.|-.++|++.+. |.
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~-------W~ 211 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYEL-------WK 211 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHH-------HH
Confidence 46778888889999999999999999999999999999999999999999999999999999999999875 66
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHH
Q 002273 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY-----AEAYCNMGVIYK 236 (944)
Q Consensus 162 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~ 236 (944)
.++....++|++.+|.-+|.++++.+|.+....+..+.+|.+.|++..|...|.+++...|.. .......+..+.
T Consensus 212 ~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~ 291 (895)
T KOG2076|consen 212 RLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFI 291 (895)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHH
Confidence 777778888999999999999999999999999999999999999999999999999999831 123344577788
Q ss_pred HcCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHH
Q 002273 237 NRGDLESAIACYERCLAVSPN--FEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKK 314 (944)
Q Consensus 237 ~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~ 314 (944)
..++-+.|++.++.++....+ ....+..++.++........+............- ..-.+.-....+-.+-...+..
T Consensus 292 ~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e-~d~~e~~~~~~~~~~~~~~~~~ 370 (895)
T KOG2076|consen 292 THNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESE-KDDSEWDTDERRREEPNALCEV 370 (895)
T ss_pred HhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccC-CChhhhhhhhhccccccccccC
Confidence 888889999999999883322 2233444555554444332111111111000000 0000000000000000000000
Q ss_pred HHHhCCCCHHH-HHHHHHHHHHcCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC-CH
Q 002273 315 ALYYNWHYADA-MYNLGVAYGEMLKFDMAIVFYELAFHFNP-HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN-FS 391 (944)
Q Consensus 315 al~~~p~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~ 391 (944)
--+..+ +..+ ...++.+..+.++..+++..+..--...+ +.++.+..++..|...|++.+|+.+|..+....+. +.
T Consensus 371 ~~~~s~-~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~ 449 (895)
T KOG2076|consen 371 GKELSY-DLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNA 449 (895)
T ss_pred CCCCCc-cchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccch
Confidence 000011 1122 44444445555555555544433322223 45889999999999999999999999999887654 46
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002273 392 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 457 (944)
Q Consensus 392 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~ 457 (944)
.+|+.+|.||..+|.+++|+++|++++...|++.++...|+.++.++|+.++|.+.+++.. +||
T Consensus 450 ~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~--~~D 513 (895)
T KOG2076|consen 450 FVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII--NPD 513 (895)
T ss_pred hhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc--CCC
Confidence 7999999999999999999999999999999999999999999999999999999999887 444
No 41
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=2.4e-19 Score=183.61 Aligned_cols=384 Identities=14% Similarity=0.112 Sum_probs=319.4
Q ss_pred CCCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC---------
Q 002273 42 TLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD--------- 112 (944)
Q Consensus 42 ~~~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------- 112 (944)
...+.+.+.....+.++...++-+.|+....++.... ..+.....++..+..-++-.++.-.|...+...
T Consensus 91 ~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~-r~p~inlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ 169 (564)
T KOG1174|consen 91 YPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTL-RSPRINLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEA 169 (564)
T ss_pred CCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCccc-cchhHHHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHH
Confidence 4455688889999999999999999998877654321 234555556666555555445544444443322
Q ss_pred ----------------------CCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHH
Q 002273 113 ----------------------PQNACAH---THCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSL 167 (944)
Q Consensus 113 ----------------------p~~~~~~---~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~ 167 (944)
|..+..+ ..++.++....-+..+..++-.-....|++... +..+|.++
T Consensus 170 ll~l~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhL-------l~~lak~~ 242 (564)
T KOG1174|consen 170 LLELGVNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHL-------MMALGKCL 242 (564)
T ss_pred HHHHhhcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHH-------HHHHhhhh
Confidence 2222221 223444444445555556666666677777654 77888999
Q ss_pred HHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002273 168 KLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIAC 247 (944)
Q Consensus 168 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 247 (944)
+..|++.+|+..|+++..++|......-..|.++...|+++.-.......+........-|+--+...+..++++.|+.+
T Consensus 243 ~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~ 322 (564)
T KOG1174|consen 243 YYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNF 322 (564)
T ss_pred hhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988888888899999999999999999999
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 002273 248 YERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMY 327 (944)
Q Consensus 248 ~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 327 (944)
-+++++.+|++..++...|.++..+++. ++|+-.|+.+..+.|...+.|.
T Consensus 323 ~eK~I~~~~r~~~alilKG~lL~~~~R~------------------------------~~A~IaFR~Aq~Lap~rL~~Y~ 372 (564)
T KOG1174|consen 323 VEKCIDSEPRNHEALILKGRLLIALERH------------------------------TQAVIAFRTAQMLAPYRLEIYR 372 (564)
T ss_pred HHHHhccCcccchHHHhccHHHHhccch------------------------------HHHHHHHHHHHhcchhhHHHHH
Confidence 9999999999999999999888877766 9999999999999999999999
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH-HHHH-HCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 002273 328 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLG-VIYK-DRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 405 (944)
Q Consensus 328 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la-~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 405 (944)
.+..+|...|++.+|...-+.+++.-|.++..+..+| .++. .-.--++|.+.++++++++|....+-..+|.++...|
T Consensus 373 GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg 452 (564)
T KOG1174|consen 373 GLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEG 452 (564)
T ss_pred HHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999987 4443 3445689999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhh
Q 002273 406 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 464 (944)
Q Consensus 406 ~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~ 464 (944)
.++.++..+++.+...|+ ...+..||.++...+.+++|.++|..|+.++|++..+...
T Consensus 453 ~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~G 510 (564)
T KOG1174|consen 453 PTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRG 510 (564)
T ss_pred ccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHH
Confidence 999999999999999887 6789999999999999999999999999999998776554
No 42
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=1.2e-19 Score=193.30 Aligned_cols=361 Identities=19% Similarity=0.175 Sum_probs=293.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 002273 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEG 130 (944)
Q Consensus 51 ~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 130 (944)
+-.....+...|+|++|++--.+..+++|.-+..|..+|..+.-+|+|++|+..|.+.++.+|++...+..++.++....
T Consensus 39 ySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~ 118 (539)
T KOG0548|consen 39 YSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDY 118 (539)
T ss_pred hcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHH
Confidence 33455678889999999999999999999999999999999999999999999999999999999998888887763220
Q ss_pred ---------------------CHHHHHHHHHHHHHcCCCChhH-------------------------------------
Q 002273 131 ---------------------RLVEAAESYHKALSADPSYKPA------------------------------------- 152 (944)
Q Consensus 131 ---------------------~~~~A~~~~~~al~~~p~~~~~------------------------------------- 152 (944)
++-.....|.+.++..+.++..
T Consensus 119 ~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~ 198 (539)
T KOG0548|consen 119 AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMA 198 (539)
T ss_pred HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCC
Confidence 0001111222222211111000
Q ss_pred ---------------------HhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002273 153 ---------------------AECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTAL 211 (944)
Q Consensus 153 ---------------------~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 211 (944)
....+.-...+|+..+...++..|++.|..++.++ .+...+.+.+-+|+..|.+.+++
T Consensus 199 ~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~ 277 (539)
T KOG0548|consen 199 EPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECI 277 (539)
T ss_pred CcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhh
Confidence 11123345678999999999999999999999999 88889999999999999999999
Q ss_pred HHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 002273 212 GCYEKAALERPMY-------AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLF 284 (944)
Q Consensus 212 ~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~ 284 (944)
....++++..... ......+|..|.+.++++.|+.+|++++..... + .+
T Consensus 278 ~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt-~-------~~---------------- 333 (539)
T KOG0548|consen 278 ELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT-P-------DL---------------- 333 (539)
T ss_pred cchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC-H-------HH----------------
Confidence 9999988765432 234445677888899999999999998876544 1 11
Q ss_pred hhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 002273 285 RLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLG 364 (944)
Q Consensus 285 ~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 364 (944)
....+..++++...+...-.+|.-...-...|..++..|+|..|+..|.++++.+|+++..|.+.|
T Consensus 334 --------------ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRA 399 (539)
T KOG0548|consen 334 --------------LSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRA 399 (539)
T ss_pred --------------HHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHH
Confidence 122234477777787777788888888888899999999999999999999999999999999999
Q ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 002273 365 VIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLA 444 (944)
Q Consensus 365 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA 444 (944)
.+|..++.+..|+...+++++++|++...|...|.++..+.+|++|++.|+++++.+|++.++.-.+.+|+..+......
T Consensus 400 ac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~~~~~~ 479 (539)
T KOG0548|consen 400 ACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQRGDETP 479 (539)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhhcCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998875444444
Q ss_pred HHHHHH
Q 002273 445 IDAYEQ 450 (944)
Q Consensus 445 ~~~~~~ 450 (944)
.+.+++
T Consensus 480 ee~~~r 485 (539)
T KOG0548|consen 480 EETKRR 485 (539)
T ss_pred HHHHHh
Confidence 555555
No 43
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.88 E-value=3.1e-18 Score=184.58 Aligned_cols=389 Identities=13% Similarity=0.037 Sum_probs=244.6
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 002273 48 GKDALSYANILRSRNKFVDALALYEIVLEKDS---GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (944)
Q Consensus 48 ~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (944)
-+.|+..|..+-..|-.-.+..+...++...- +.-..|..-+..+.+.+-++-|...|..+++..|.....|...+.
T Consensus 479 rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~ 558 (913)
T KOG0495|consen 479 RDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAM 558 (913)
T ss_pred HHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 34455555555555544444444444444321 223445555566666666666666666666666666666666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 002273 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204 (944)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 204 (944)
.-..-|..++-..++++++...|+.... +...+..+...|+...|...+.++++.+|++.++|+.--.+....
T Consensus 559 ~ek~hgt~Esl~Allqkav~~~pkae~l-------wlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en 631 (913)
T KOG0495|consen 559 FEKSHGTRESLEALLQKAVEQCPKAEIL-------WLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFEN 631 (913)
T ss_pred HHHhcCcHHHHHHHHHHHHHhCCcchhH-------HHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhcc
Confidence 6666666666666666666666654443 333344444556666666666666666666666666666666666
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 002273 205 MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLF 284 (944)
Q Consensus 205 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~ 284 (944)
.+++.|..+|.++....|. ..+|+.-+.+...+++.++|+..++++++..|+....|..++.++.++++.
T Consensus 632 ~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~i--------- 701 (913)
T KOG0495|consen 632 DELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENI--------- 701 (913)
T ss_pred ccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHH---------
Confidence 6666666666666655443 455666666666666666666666666666666666666666655544433
Q ss_pred hhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 002273 285 RLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLG 364 (944)
Q Consensus 285 ~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 364 (944)
+.|.+.|...++..|.....|..++.+-.+.|+.-.|...++++.-.+|.+...|....
T Consensus 702 ---------------------e~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~I 760 (913)
T KOG0495|consen 702 ---------------------EMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESI 760 (913)
T ss_pred ---------------------HHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 002273 365 VIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLA 444 (944)
Q Consensus 365 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA 444 (944)
..-.+.|+.++|.....+|++..|.+...|..-..+.-.-++-..++. |++....++.++...|.++....++++|
T Consensus 761 r~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~D----ALkkce~dphVllaia~lfw~e~k~~ka 836 (913)
T KOG0495|consen 761 RMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSID----ALKKCEHDPHVLLAIAKLFWSEKKIEKA 836 (913)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHH----HHHhccCCchhHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666666555554444444444333333 3333345678889999999999999999
Q ss_pred HHHHHHHHhhCCCChhhhhhHHHHhhhccCCChHHH
Q 002273 445 IDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKL 480 (944)
Q Consensus 445 ~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~ 480 (944)
.++|.++++++|++.+++..++ -.++..|..++.
T Consensus 837 r~Wf~Ravk~d~d~GD~wa~fy--kfel~hG~eed~ 870 (913)
T KOG0495|consen 837 REWFERAVKKDPDNGDAWAWFY--KFELRHGTEEDQ 870 (913)
T ss_pred HHHHHHHHccCCccchHHHHHH--HHHHHhCCHHHH
Confidence 9999999999999999987643 334556655543
No 44
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.85 E-value=1.2e-16 Score=195.46 Aligned_cols=365 Identities=15% Similarity=0.091 Sum_probs=269.2
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDS--GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (944)
+...++..-..+.+.|++++|+++|+++.+.+. .+...+..+...+...|..++|...++.... | +...|..+-.
T Consensus 369 ~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--p-d~~Tyn~LL~ 445 (1060)
T PLN03218 369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--P-TLSTFNMLMS 445 (1060)
T ss_pred CchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--C-CHHHHHHHHH
Confidence 456677777778899999999999999987653 3444455566677889999999999887754 4 5678888889
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHH
Q 002273 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH-YAPAYYNLGVVYSE 203 (944)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~ 203 (944)
.+.+.|++++|...|+++.+...... ..++..+...|.+.|+.++|.+.|+++.+.... +...|..+...|.+
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD------~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k 519 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKAD------CKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR 519 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999988654322 124677788889999999999999999876533 68899999999999
Q ss_pred cCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHhhhhhhh
Q 002273 204 LMQYDTALGCYEKAALERP-MYAEAYCNMGVIYKNRGDLESAIACYERCLAV----SPNFEIAKNNMAIALTDLGTKTYG 278 (944)
Q Consensus 204 ~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~l~~~~~~~~~ 278 (944)
.|++++|+++|+++.+..- -+...|..+...|.+.|++++|.+.|+++... .|+ ...+..+...+.+
T Consensus 520 ~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k------- 591 (1060)
T PLN03218 520 AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACAN------- 591 (1060)
T ss_pred CcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHH-------
Confidence 9999999999999976532 24778999999999999999999999999763 343 4556656555555
Q ss_pred hHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--CCC
Q 002273 279 RALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYN-WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF--NPH 355 (944)
Q Consensus 279 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~ 355 (944)
.|++++|.++|+++.+.. +.+...|..+...|.+.|++++|+++|+++.+. .|+
T Consensus 592 -----------------------~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD 648 (1060)
T PLN03218 592 -----------------------AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD 648 (1060)
T ss_pred -----------------------CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Confidence 455577777777766654 335566667777777777777777777776655 232
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Q 002273 356 CAEACNNLGVIYKDRDNLDKAVECYQMALSIK-PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA--NPTYAEAYNNLG 432 (944)
Q Consensus 356 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~--~p~~~~a~~~la 432 (944)
...|..+...|.+.|++++|.++++++.+.. +.+...+..+...|.+.|++++|++.|++..+. .|+ ...|..+.
T Consensus 649 -~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd-vvtyN~LI 726 (1060)
T PLN03218 649 -EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT-VSTMNALI 726 (1060)
T ss_pred -HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHH
Confidence 5566666677777777777777777766553 234556666777777777777777777766543 333 55666777
Q ss_pred HHHHHcCCHHHHHHHHHHHHh
Q 002273 433 VLYRDAGSISLAIDAYEQCLK 453 (944)
Q Consensus 433 ~~~~~~g~~~eA~~~~~~al~ 453 (944)
..|.+.|++++|.+.|++..+
T Consensus 727 ~gy~k~G~~eeAlelf~eM~~ 747 (1060)
T PLN03218 727 TALCEGNQLPKALEVLSEMKR 747 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 777777777777777776554
No 45
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.85 E-value=1.1e-18 Score=173.58 Aligned_cols=383 Identities=18% Similarity=0.152 Sum_probs=296.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC--------CHHHHHHHHHH-HHhcC--CCC---
Q 002273 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQN--------MGRLAFDSFSE-AVKLD--PQN--- 115 (944)
Q Consensus 50 ~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--------~~~~A~~~~~~-al~~~--p~~--- 115 (944)
.-+-+|..+++...|+...+++..+++..|++...|.....++.+.- +-.+|...++. .+... |..
T Consensus 6 ~~~~~a~s~~rrr~~~~ca~lc~~~l~~~~~~q~~W~LKmraLt~~vYvDeld~dd~G~Ae~~ld~n~IA~~aRPGtS~k 85 (478)
T KOG1129|consen 6 LDYFRAVSLYRRRSYERCAELCNALLQAGHDMEGVWQLKMRALTQRVYVDELDEDDGGEAEEELDFNRIATAARPGTSIK 85 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHhhheehhhccccccchHHHHhhhhhhccCCCCCCccc
Confidence 34567889999999999999999999999999999999888875432 22245444432 12111 100
Q ss_pred ----------HH-----------HHHHHHHH-HHHcCCHHHHHHH--------------------------------HHH
Q 002273 116 ----------AC-----------AHTHCGIL-YKDEGRLVEAAES--------------------------------YHK 141 (944)
Q Consensus 116 ----------~~-----------~~~~la~~-~~~~g~~~~A~~~--------------------------------~~~ 141 (944)
.. +....... -.+-|..+.|+.. |-.
T Consensus 86 ~p~t~~~g~sq~~rp~t~aGrpv~g~~rp~~~S~rpGsm~qA~rt~rta~tar~~~S~sgr~~RlgtaSmaa~~dG~f~n 165 (478)
T KOG1129|consen 86 TPFTPRPGTSQRARPATSAGRPVAGSSRPRLNSSRPGSMAQARRTTRTARTARSLGSRSGRASRLGTASMAAFNDGKFYN 165 (478)
T ss_pred CCCCCCCCCchhhcchhhcCCCCccccCccccCCCCccHHhhccCccccccccccccccchhhhhhhhhhhccCCcceee
Confidence 00 00000000 0111222222211 111
Q ss_pred HHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC---CC-------CHHHHHHHHHHHHHcCCHHHHH
Q 002273 142 ALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID---PH-------YAPAYYNLGVVYSELMQYDTAL 211 (944)
Q Consensus 142 al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~-------~~~~~~~la~~~~~~g~~~~A~ 211 (944)
+-.++|+.......+...++. .+++..++...|-......++.+ |. +......+|.+|+++|-+.+|.
T Consensus 166 lsRLN~tkYa~~p~l~kaLFe--y~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~Ae 243 (478)
T KOG1129|consen 166 LSRLNPTKYAERPTLVKALFE--YLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAE 243 (478)
T ss_pred hhhcCchhhccChHHHHHHHH--HHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhH
Confidence 122333322222223333333 24555677777776666655542 11 2334467999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCC
Q 002273 212 GCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNF 291 (944)
Q Consensus 212 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~ 291 (944)
+.++..++..|. ++.+..|+.+|.+..+...|+..+...++..|.+.......+.++..+++
T Consensus 244 kqlqssL~q~~~-~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~----------------- 305 (478)
T KOG1129|consen 244 KQLQSSLTQFPH-PDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ----------------- 305 (478)
T ss_pred HHHHHHhhcCCc-hhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh-----------------
Confidence 999999998775 88999999999999999999999999999999998888888887766654
Q ss_pred CchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC
Q 002273 292 QSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD 371 (944)
Q Consensus 292 ~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 371 (944)
+++|.++|+.+++.+|.+.++.-.+|.-|+..++.+-|+.+|++.+++.-.+++.+.++|.|++..+
T Consensus 306 -------------~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaq 372 (478)
T KOG1129|consen 306 -------------QEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQ 372 (478)
T ss_pred -------------HHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhc
Confidence 4999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002273 372 NLDKAVECYQMALSIKP---NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAY 448 (944)
Q Consensus 372 ~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~ 448 (944)
+++-++..|++++.... .-.++|+++|.+....|++.-|..+|+-++..++++.+++.+||.+-.+.|+.++|..++
T Consensus 373 Q~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll 452 (478)
T KOG1129|consen 373 QIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLL 452 (478)
T ss_pred chhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHH
Confidence 99999999999998743 246799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCChhhhhhH
Q 002273 449 EQCLKIDPDSRNAGQNR 465 (944)
Q Consensus 449 ~~al~l~P~~~~a~~~~ 465 (944)
..+-.+.|+-.+...|+
T Consensus 453 ~~A~s~~P~m~E~~~Nl 469 (478)
T KOG1129|consen 453 NAAKSVMPDMAEVTTNL 469 (478)
T ss_pred HHhhhhCccccccccce
Confidence 99999999988887774
No 46
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.85 E-value=5.7e-18 Score=191.28 Aligned_cols=302 Identities=12% Similarity=0.006 Sum_probs=232.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH-HHHHHH
Q 002273 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA-PAYYNL 197 (944)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l 197 (944)
....|.+....|+++.|.+.+.++.+..|+.... +...+.+...+|++++|..++.++.+..|+.. .+....
T Consensus 87 ~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~-------~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~ 159 (409)
T TIGR00540 87 QTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLN-------LIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIAR 159 (409)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHH-------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHH
Confidence 3455667777888888888888887777664432 44556777777888888888888888777764 455666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhh
Q 002273 198 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTY 277 (944)
Q Consensus 198 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~ 277 (944)
+.++...|++++|...++++.+..|+++.++..++.++...|++++|.+.+.+..+....+......+... ...+
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~-a~~~---- 234 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQK-AEIG---- 234 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHH-HHHH----
Confidence 88888888888888888888888888888888888888888888888888888887754443322111110 0000
Q ss_pred hhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 002273 278 GRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNW----HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN 353 (944)
Q Consensus 278 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 353 (944)
....+..+++.+.+.++.+..| +++.++..++..+...|++++|++.++++++..
T Consensus 235 ---------------------~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~ 293 (409)
T TIGR00540 235 ---------------------LLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL 293 (409)
T ss_pred ---------------------HHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Confidence 0111122344556666666666 589999999999999999999999999999999
Q ss_pred CCCHHHH--HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCCHHH
Q 002273 354 PHCAEAC--NNLGVIYKDRDNLDKAVECYQMALSIKPNFS--QSLNNLGVVYTVQGKMDAAAEMIE--KAIAANPTYAEA 427 (944)
Q Consensus 354 p~~~~~~--~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~l~--~al~~~p~~~~a 427 (944)
|++.... ..........++.+++++.++++++..|+++ ..+..+|+++.+.|++++|.++|+ ++++..|+...
T Consensus 294 pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~- 372 (409)
T TIGR00540 294 GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND- 372 (409)
T ss_pred CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-
Confidence 9987532 2233334446889999999999999999999 899999999999999999999999 57778887554
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002273 428 YNNLGVLYRDAGSISLAIDAYEQCLKI 454 (944)
Q Consensus 428 ~~~la~~~~~~g~~~eA~~~~~~al~l 454 (944)
+..+|.++.+.|+.++|.++|++++..
T Consensus 373 ~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 373 LAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 669999999999999999999998764
No 47
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.84 E-value=3.3e-17 Score=198.72 Aligned_cols=419 Identities=14% Similarity=0.061 Sum_probs=335.3
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCCHHHHHHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDS--GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL--DPQNACAHTHC 122 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 122 (944)
+...+......+...|++++|+.+|+.+....+ -+...+..+..++...++++.|...+..+.+. .| +...+..+
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~-~~~~~n~L 164 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEP-DQYMMNRV 164 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCc-chHHHHHH
Confidence 344677777888999999999999999877543 36778888888899999999999999888764 34 56788888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC--C-----------
Q 002273 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP--H----------- 189 (944)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~----------- 189 (944)
...|.+.|++++|.+.|++..+ |+. . .|..+...+.+.|++++|++.|+++.+... +
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~--~~~-~-------t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~ 234 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPE--RNL-A-------SWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRAS 234 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCC--CCe-e-------eHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHH
Confidence 8999999999999999988753 321 1 367777788888999999999999876532 1
Q ss_pred -----------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002273 190 -----------------------YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIA 246 (944)
Q Consensus 190 -----------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 246 (944)
+..++..+...|.+.|++++|.+.|++.. +.+...|..+...|.+.|++++|++
T Consensus 235 ~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~ 311 (697)
T PLN03081 235 AGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALC 311 (697)
T ss_pred hcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHH
Confidence 23345667888999999999999998763 4567899999999999999999999
Q ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcC-----CCCCchhHHHhhhcCCHHHHHHHHHHHHHhCC
Q 002273 247 CYERCLAVS-PNFEIAKNNMAIALTDLGTKTYGRALLLFRLNG-----SNFQSPFFELVKLEGDINQGVAYYKKALYYNW 320 (944)
Q Consensus 247 ~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p 320 (944)
.|+++.+.. ..+...+..+..++.+.+....+..+....... ......+...|.+.|++++|.+.|++..+
T Consensus 312 lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--- 388 (697)
T PLN03081 312 LYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR--- 388 (697)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---
Confidence 999987653 235567888888888888877666655443222 22344688899999999999999998754
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC--CCHHHHHHH
Q 002273 321 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN-PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP--NFSQSLNNL 397 (944)
Q Consensus 321 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l 397 (944)
.+...|..+...|.+.|+.++|+++|+++.+.. ..+...+..+...+...|+.++|.++|+...+..+ .+...|..+
T Consensus 389 ~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~l 468 (697)
T PLN03081 389 KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM 468 (697)
T ss_pred CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhH
Confidence 356789999999999999999999999998753 22467788888999999999999999999986532 235678889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhhHHHHhhhccCCCh
Q 002273 398 GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHD 477 (944)
Q Consensus 398 a~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~ 477 (944)
..+|.+.|++++|.+.+++. ...| +..+|..+...+...|+++.|...+++.+++.|++...+.. +.-.|...|..
T Consensus 469 i~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~--L~~~y~~~G~~ 544 (697)
T PLN03081 469 IELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVV--LLNLYNSSGRQ 544 (697)
T ss_pred HHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHH--HHHHHHhCCCH
Confidence 99999999999999998864 2334 36789999999999999999999999999999998766543 45567778887
Q ss_pred HHHHHHHHH
Q 002273 478 DKLFEAHRD 486 (944)
Q Consensus 478 ~~~~~~~~~ 486 (944)
+++.+..+.
T Consensus 545 ~~A~~v~~~ 553 (697)
T PLN03081 545 AEAAKVVET 553 (697)
T ss_pred HHHHHHHHH
Confidence 776655443
No 48
>PLN03077 Protein ECB2; Provisional
Probab=99.84 E-value=3e-17 Score=203.99 Aligned_cols=414 Identities=15% Similarity=0.095 Sum_probs=278.0
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCC----------------------------------CHHHHHHHHHHH
Q 002273 49 KDALSYANILRSRNKFVDALALYEIVLEK--DSG----------------------------------NVEAHIGKGICL 92 (944)
Q Consensus 49 ~~~~~~A~~~~~~g~~~~A~~~~~~al~~--~p~----------------------------------~~~~~~~la~~~ 92 (944)
..|-.+...|.+.|++++|+.+|+++.+. .|+ +...+..+...|
T Consensus 254 ~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y 333 (857)
T PLN03077 254 ISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMY 333 (857)
T ss_pred chhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHH
Confidence 34555556666667777777776666553 222 223333344444
Q ss_pred HHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhHHhHHHHHHHHHHHHHHHc
Q 002273 93 QMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSAD--PSYKPAAECLAIVLTDLGTSLKLA 170 (944)
Q Consensus 93 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~lg~~~~~~ 170 (944)
.+.|++++|.+.|++... .+...|..+...|.+.|++++|++.|++..+.. |+... +..+-..+...
T Consensus 334 ~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t--------~~~ll~a~~~~ 402 (857)
T PLN03077 334 LSLGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEIT--------IASVLSACACL 402 (857)
T ss_pred HhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCcee--------HHHHHHHHhcc
Confidence 444444444444444321 223344444445555555555555555443322 22211 22222334445
Q ss_pred CChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002273 171 GNTQDGIQKYYEALKIDP-HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE 249 (944)
Q Consensus 171 g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 249 (944)
|++++|.+.+..+.+... .+..++..+...|.+.|++++|.+.|++..+ .+...|..+...|...|+.++|+..|+
T Consensus 403 g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~ 479 (857)
T PLN03077 403 GDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFR 479 (857)
T ss_pred chHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHH
Confidence 555555555555554422 2345666777778888888888888877543 345577778888888888888888888
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhh-----cCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHH
Q 002273 250 RCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRL-----NGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYAD 324 (944)
Q Consensus 250 ~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~-----~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~ 324 (944)
++....+.+...+..+..++...|....++.+..... .+......+...|.+.|++++|...|+.. +.+..
T Consensus 480 ~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~ 555 (857)
T PLN03077 480 QMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVV 555 (857)
T ss_pred HHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChh
Confidence 8876555555666666666767666655555443322 22234446788999999999999999886 56788
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHH
Q 002273 325 AMYNLGVAYGEMLKFDMAIVFYELAFHF--NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP--NFSQSLNNLGVV 400 (944)
Q Consensus 325 ~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~ 400 (944)
.|..+...|...|+.++|+++|++..+. .|+ ...+..+...+.+.|+.++|.++|+...+..+ .+...+..+..+
T Consensus 556 s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~ 634 (857)
T PLN03077 556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDL 634 (857)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 9999999999999999999999998875 344 55666777789999999999999999885432 235789999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhhHHHHhhhccCCChHHH
Q 002273 401 YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKL 480 (944)
Q Consensus 401 ~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~ 480 (944)
+.+.|++++|.+.+++. ...|+ ..+|..|-..+...|+.+.|....+++++++|++...+. +++-.|...|..+++
T Consensus 635 l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~--ll~n~ya~~g~~~~a 710 (857)
T PLN03077 635 LGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYI--LLCNLYADAGKWDEV 710 (857)
T ss_pred HHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHH--HHHHHHHHCCChHHH
Confidence 99999999999999886 35565 777888888889999999999999999999999876554 345567777776665
Q ss_pred HHHHH
Q 002273 481 FEAHR 485 (944)
Q Consensus 481 ~~~~~ 485 (944)
.+..+
T Consensus 711 ~~vr~ 715 (857)
T PLN03077 711 ARVRK 715 (857)
T ss_pred HHHHH
Confidence 54433
No 49
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.84 E-value=1.5e-17 Score=201.86 Aligned_cols=401 Identities=13% Similarity=0.012 Sum_probs=330.1
Q ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 002273 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDS-GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (944)
Q Consensus 46 ~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (944)
.+...+..+...+...++++.|.+++..+.+..- .+...+..+...|.+.|++++|.+.|++..+ .+...|..+..
T Consensus 121 ~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---~~~~t~n~li~ 197 (697)
T PLN03081 121 LPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE---RNLASWGTIIG 197 (697)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC---CCeeeHHHHHH
Confidence 4667788888888999999999999999887532 3678888999999999999999999998754 35667899999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCChh-HHhHH----------------------------HHHHHHHHHHHHHcCChHH
Q 002273 125 LYKDEGRLVEAAESYHKALSADPSYKP-AAECL----------------------------AIVLTDLGTSLKLAGNTQD 175 (944)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~l----------------------------a~~~~~lg~~~~~~g~~~~ 175 (944)
.|.+.|++++|+..|++..+....... ....+ ..++..+...|.+.|++++
T Consensus 198 ~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~ 277 (697)
T PLN03081 198 GLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIED 277 (697)
T ss_pred HHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHH
Confidence 999999999999999999875432111 11000 0124556788999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002273 176 GIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER-PMYAEAYCNMGVIYKNRGDLESAIACYERCLAV 254 (944)
Q Consensus 176 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 254 (944)
|.+.|++.. +.+..+|..+...|.+.|++++|+++|++..+.. .-+...+..+...+.+.|++++|.+.+..+++.
T Consensus 278 A~~vf~~m~---~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~ 354 (697)
T PLN03081 278 ARCVFDGMP---EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT 354 (697)
T ss_pred HHHHHHhCC---CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh
Confidence 999998763 4578899999999999999999999999997653 225678899999999999999999999999987
Q ss_pred C-CCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhc-CCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Q 002273 255 S-PNFEIAKNNMAIALTDLGTKTYGRALLLFRLN-GSNFQSPFFELVKLEGDINQGVAYYKKALYYNW-HYADAMYNLGV 331 (944)
Q Consensus 255 ~-p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~-~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~ 331 (944)
. +.+...+..+...|.+.|+...+..+...... +...+..++..+...|+.++|++.|++..+... .+..++..+..
T Consensus 355 g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~ 434 (697)
T PLN03081 355 GFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLS 434 (697)
T ss_pred CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 6 55677888999999999988776666544322 223344677889999999999999999987532 35677888999
Q ss_pred HHHHcCChHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 002273 332 AYGEMLKFDMAIVFYELAFHFNP--HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDA 409 (944)
Q Consensus 332 ~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 409 (944)
.+...|+.++|.++|+.+.+..+ .+...|..+...|.+.|++++|.+.+++. ...| +...|..+...+...|+++.
T Consensus 435 a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~ 512 (697)
T PLN03081 435 ACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLEL 512 (697)
T ss_pred HHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHH
Confidence 99999999999999999986432 23568889999999999999999998864 2333 46679999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002273 410 AAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 454 (944)
Q Consensus 410 A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l 454 (944)
|...+++.+++.|++...|..++.+|.+.|++++|.+.+++..+.
T Consensus 513 a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 513 GRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999987765
No 50
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.84 E-value=1.5e-17 Score=187.94 Aligned_cols=301 Identities=12% Similarity=0.009 Sum_probs=161.1
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHH
Q 002273 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA-CAHTHCGILYK 127 (944)
Q Consensus 49 ~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~ 127 (944)
...+..|...+..|+++.|.+.+.++.+..|+....+...|.++..+|++++|..++.++.+..|++. .+....+.++.
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l 164 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILL 164 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHH
Confidence 34455555555566666666666655555555555555555555556666666666666555555543 33444455555
Q ss_pred HcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH----HHHHHHHH
Q 002273 128 DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY----NLGVVYSE 203 (944)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~----~la~~~~~ 203 (944)
..|++++|...+++..+..|+++.+ +..++.++...|++++|++.+.+..+....+..... ....-+..
T Consensus 165 ~~~~~~~Al~~l~~l~~~~P~~~~~-------l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~ 237 (409)
T TIGR00540 165 AQNELHAARHGVDKLLEMAPRHKEV-------LKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLD 237 (409)
T ss_pred HCCCHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 5666666666666666665555543 444445555555666566555555554332222111 11111122
Q ss_pred cCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhh
Q 002273 204 LMQYDTALGCYEKAALERP----MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGR 279 (944)
Q Consensus 204 ~g~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 279 (944)
.+..+++.+.+.++.+..| +++..+..++..+...|++++|.+.++++++..|++......
T Consensus 238 ~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~--------------- 302 (409)
T TIGR00540 238 EAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLP--------------- 302 (409)
T ss_pred HHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhH---------------
Confidence 2333333444555554444 355555555555555555555555555555555554321100
Q ss_pred HHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH--
Q 002273 280 ALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA-- 357 (944)
Q Consensus 280 a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-- 357 (944)
..........++.+++++.++++++..|+++
T Consensus 303 -----------------------------------------------~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~ 335 (409)
T TIGR00540 303 -----------------------------------------------LCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKC 335 (409)
T ss_pred -----------------------------------------------HHHHhhhcCCCChHHHHHHHHHHHHhCCCChhH
Confidence 1111122223445556666666666666666
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHH--HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002273 358 EACNNLGVIYKDRDNLDKAVECYQ--MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA 419 (944)
Q Consensus 358 ~~~~~la~~~~~~g~~~~A~~~~~--~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 419 (944)
..+..+|.++.+.|++++|.++|+ ++++..|+... +..+|.++.+.|+.++|.+++++++.
T Consensus 336 ~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 336 CINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666666666666666666666666 45555565444 44666666666666666666666654
No 51
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.84 E-value=1.9e-20 Score=201.14 Aligned_cols=261 Identities=21% Similarity=0.203 Sum_probs=121.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 002273 162 DLGTSLKLAGNTQDGIQKYYEALKI--DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239 (944)
Q Consensus 162 ~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 239 (944)
.++.++...|++++|++.+.+.+.. .|++...|..+|.+....+++++|+..|++++..++.++..+..++.+ ...+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 5588888999999999999766544 488899999999999999999999999999999999988888888888 7999
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhC
Q 002273 240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYN 319 (944)
Q Consensus 240 ~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~ 319 (944)
++++|+.+++++.+..++ +..+.....+ +...++++++...++++....
T Consensus 92 ~~~~A~~~~~~~~~~~~~-~~~l~~~l~~------------------------------~~~~~~~~~~~~~l~~~~~~~ 140 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGD-PRYLLSALQL------------------------------YYRLGDYDEAEELLEKLEELP 140 (280)
T ss_dssp ---------------------------H-------------------------------HHHTT-HHHHHHHHHHHHH-T
T ss_pred cccccccccccccccccc-cchhhHHHHH------------------------------HHHHhHHHHHHHHHHHHHhcc
Confidence 999999999998876543 3333333333 444567799999999977654
Q ss_pred --CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 002273 320 --WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 397 (944)
Q Consensus 320 --p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 397 (944)
+.++..+..+|.++.+.|+.++|+..|+++++.+|++..+...++.++...|+++++.+.++...+..|.++..+..+
T Consensus 141 ~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~l 220 (280)
T PF13429_consen 141 AAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDAL 220 (280)
T ss_dssp ---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 678899999999999999999999999999999999999999999999999999999999999988888899999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002273 398 GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 454 (944)
Q Consensus 398 a~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l 454 (944)
|.++..+|++++|+.+|+++++.+|+++.++..+|.++...|+.++|..+++++++.
T Consensus 221 a~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 221 AAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred HHHhccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999999999999999999999999998763
No 52
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.83 E-value=1.1e-16 Score=173.68 Aligned_cols=372 Identities=19% Similarity=0.233 Sum_probs=277.0
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (944)
....+|..+...+..++|.+.++..+++++..|++++.+...|..+...|+.++|......++..++.+...|..+|.++
T Consensus 6 KE~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~ 85 (700)
T KOG1156|consen 6 KENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQ 85 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 002273 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206 (944)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 206 (944)
....+|++|+++|+.|+.+.|+|... +..++....+.++++.....-.+.++..|..-..|...+..+...|+
T Consensus 86 R~dK~Y~eaiKcy~nAl~~~~dN~qi-------lrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~ 158 (700)
T KOG1156|consen 86 RSDKKYDEAIKCYRNALKIEKDNLQI-------LRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGE 158 (700)
T ss_pred hhhhhHHHHHHHHHHHHhcCCCcHHH-------HHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999775 67777777888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhC---CC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhh
Q 002273 207 YDTALGCYEKAALER---PM-----YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYG 278 (944)
Q Consensus 207 ~~~A~~~~~~al~~~---p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 278 (944)
+..|....+...+.. |. ..+.......+..+.|.+++|++.+..--..--+........+
T Consensus 159 y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka------------ 226 (700)
T KOG1156|consen 159 YKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKA------------ 226 (700)
T ss_pred HHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHH------------
Confidence 999999988877654 32 2334555666777788888887766553222111111111122
Q ss_pred hHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH-HHHHHHHhhCCCCH
Q 002273 279 RALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAI-VFYELAFHFNPHCA 357 (944)
Q Consensus 279 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~ 357 (944)
.++...+++++|...|...+..+|++...+..+-.++..-.+.-++. ..|...-+..|...
T Consensus 227 ------------------~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e 288 (700)
T KOG1156|consen 227 ------------------DLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHE 288 (700)
T ss_pred ------------------HHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccc
Confidence 23555667799999999999999998888877777775333334444 44444433322210
Q ss_pred --------------------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHhh-------C-----------
Q 002273 358 --------------------------------EACNNLGVIYKDRDNLDKAVECYQMALSI-------K----------- 387 (944)
Q Consensus 358 --------------------------------~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~----------- 387 (944)
.+...+-.+|. +.++. ..+++.+.. .
T Consensus 289 ~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk---~p~k~-~~le~Lvt~y~~~L~~~~~f~~~D~~~~ 364 (700)
T KOG1156|consen 289 CPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYK---DPEKV-AFLEKLVTSYQHSLSGTGMFNFLDDGKQ 364 (700)
T ss_pred cchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHh---chhHh-HHHHHHHHHHHhhcccccCCCccccccc
Confidence 00011111111 11111 122222211 1
Q ss_pred -CCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 002273 388 -PNFS--QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 459 (944)
Q Consensus 388 -p~~~--~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~ 459 (944)
|-.+ ..++.++.-+...|+++.|..+++.|+...|+..+.+...|+++...|++++|..+++.+.++|-.|.
T Consensus 365 E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR 439 (700)
T KOG1156|consen 365 EPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADR 439 (700)
T ss_pred CCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhH
Confidence 1111 24566777788888888888888888888888888888888888888888888888888888776554
No 53
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.83 E-value=7.1e-16 Score=188.70 Aligned_cols=362 Identities=13% Similarity=0.048 Sum_probs=301.7
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCH
Q 002273 54 YANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDP-QNACAHTHCGILYKDEGRL 132 (944)
Q Consensus 54 ~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~ 132 (944)
....+...|..++|..+|+.+.. .+...|..+...+.+.|++++|...|+++.+... .+...+..+...|.+.|+.
T Consensus 412 li~~~~~~g~~~eAl~lf~~M~~---pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~v 488 (1060)
T PLN03218 412 FFKACKKQRAVKEAFRFAKLIRN---PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKV 488 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHcCC---CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCH
Confidence 34456778999999999987754 4578888889999999999999999999988653 3567899999999999999
Q ss_pred HHHHHHHHHHHHcCCC-ChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHH
Q 002273 133 VEAAESYHKALSADPS-YKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP-HYAPAYYNLGVVYSELMQYDTA 210 (944)
Q Consensus 133 ~~A~~~~~~al~~~p~-~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A 210 (944)
++|.+.|+++.+.... +.. .|..+...|.+.|++++|++.|+++.+..- -+...|..+...|.+.|++++|
T Consensus 489 d~A~~vf~eM~~~Gv~Pdvv-------TynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA 561 (1060)
T PLN03218 489 DAMFEVFHEMVNAGVEANVH-------TFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRA 561 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999876432 222 477788889999999999999999976532 2477899999999999999999
Q ss_pred HHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhhhhhhhhHHHHHh
Q 002273 211 LGCYEKAALE----RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS-PNFEIAKNNMAIALTDLGTKTYGRALLLFR 285 (944)
Q Consensus 211 ~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~a~~~~~ 285 (944)
.++|+++... .| +...+..+...|.+.|++++|.+.|+++.+.. +.+...+..+...+.
T Consensus 562 ~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~--------------- 625 (1060)
T PLN03218 562 FDVLAEMKAETHPIDP-DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCS--------------- 625 (1060)
T ss_pred HHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHH---------------
Confidence 9999999763 34 46788889999999999999999999998876 345556666655544
Q ss_pred hcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CCCHHHHHHH
Q 002273 286 LNGSNFQSPFFELVKLEGDINQGVAYYKKALYYN-WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN-PHCAEACNNL 363 (944)
Q Consensus 286 ~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 363 (944)
+.|++++|+++|+++.+.. ..+...|..+...|.+.|++++|.++++++.+.. +.+...+..+
T Consensus 626 ---------------k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsL 690 (1060)
T PLN03218 626 ---------------QKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSL 690 (1060)
T ss_pred ---------------hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4566799999999998763 2246789999999999999999999999999874 4467899999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Q 002273 364 GVIYKDRDNLDKAVECYQMALSIK-PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA--NPTYAEAYNNLGVLYRDAGS 440 (944)
Q Consensus 364 a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~--~p~~~~a~~~la~~~~~~g~ 440 (944)
...|.+.|++++|++.|++..+.. ..+...|..+...|.+.|++++|+++|++..+. .|+ ...|..+...+.+.|+
T Consensus 691 I~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd-~~Ty~sLL~a~~k~G~ 769 (1060)
T PLN03218 691 MGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN-TITYSILLVASERKDD 769 (1060)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCC
Confidence 999999999999999999987642 234678999999999999999999999998765 354 6778888899999999
Q ss_pred HHHHHHHHHHHHhhCCC
Q 002273 441 ISLAIDAYEQCLKIDPD 457 (944)
Q Consensus 441 ~~eA~~~~~~al~l~P~ 457 (944)
+++|.+.+.+.++....
T Consensus 770 le~A~~l~~~M~k~Gi~ 786 (1060)
T PLN03218 770 ADVGLDLLSQAKEDGIK 786 (1060)
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 99999999999886443
No 54
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.83 E-value=4.7e-17 Score=182.79 Aligned_cols=303 Identities=11% Similarity=0.007 Sum_probs=232.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHH-HHHH
Q 002273 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA-YYNL 197 (944)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~l 197 (944)
.+..|......|++++|.+...+.-+..+. +.. .+...+......|+++.|..++.++.+.+|+.... ....
T Consensus 87 ~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p~l------~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~ 159 (398)
T PRK10747 87 QTEQALLKLAEGDYQQVEKLMTRNADHAEQ-PVV------NYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITR 159 (398)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcccc-hHH------HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 345566667788888888777765544222 221 13334555578888888888888888888877533 3345
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH-HHHHHhhhhh
Q 002273 198 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA-IALTDLGTKT 276 (944)
Q Consensus 198 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la-~~l~~~~~~~ 276 (944)
+.++...|++++|+..++++.+..|+++.++..++.+|...|++++|++.+.+..+..+.+......+- .++..+-..
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~- 238 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQ- 238 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHH-
Confidence 888888999999999999999999999999999999999999999999888888877665544322111 111111000
Q ss_pred hhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 002273 277 YGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC 356 (944)
Q Consensus 277 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 356 (944)
.....+.+...+.++...+..|+++.+...++..+...|+.++|.+.++++++. +.+
T Consensus 239 ----------------------~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~ 295 (398)
T PRK10747 239 ----------------------AMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYD 295 (398)
T ss_pred ----------------------HHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCC
Confidence 111223345555556655667789999999999999999999999999999994 445
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002273 357 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 436 (944)
Q Consensus 357 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~ 436 (944)
+......+.+ ..++.+++++.+++.++.+|+++..+..+|.++...+++++|.++|+++++..|++ ..+..++.++.
T Consensus 296 ~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~ 372 (398)
T PRK10747 296 ERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALD 372 (398)
T ss_pred HHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHH
Confidence 6555555544 44999999999999999999999999999999999999999999999999999985 55678999999
Q ss_pred HcCCHHHHHHHHHHHHhhC
Q 002273 437 DAGSISLAIDAYEQCLKID 455 (944)
Q Consensus 437 ~~g~~~eA~~~~~~al~l~ 455 (944)
+.|+.++|.++|++++.+.
T Consensus 373 ~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 373 RLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HcCCHHHHHHHHHHHHhhh
Confidence 9999999999999998864
No 55
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.83 E-value=4.7e-20 Score=198.01 Aligned_cols=260 Identities=21% Similarity=0.213 Sum_probs=72.6
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHh-c-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHH
Q 002273 87 GKGICLQMQNMGRLAFDSFSEAVK-L-DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLG 164 (944)
Q Consensus 87 ~la~~~~~~g~~~~A~~~~~~al~-~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg 164 (944)
.+|.+++..|++++|++.+++.+. . .|+++..|..+|.+....+++++|+..|++++..++.+... +..++
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~-------~~~l~ 85 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQD-------YERLI 85 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-------ccccc
Confidence 345555555555555555543332 2 24445555555555555555555555555555544443332 22222
Q ss_pred HHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHH
Q 002273 165 TSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER--PMYAEAYCNMGVIYKNRGDLE 242 (944)
Q Consensus 165 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~ 242 (944)
.. ...+++++|+..++++.+..+ ++..+.....++...++++++...++++.... +.++..+..+|.++.+.|+.+
T Consensus 86 ~l-~~~~~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~ 163 (280)
T PF13429_consen 86 QL-LQDGDPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPD 163 (280)
T ss_dssp ----------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHH
T ss_pred cc-ccccccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHH
Confidence 22 344555555555555544332 23444445555556666666666666554433 345555666666666666666
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCC
Q 002273 243 SAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHY 322 (944)
Q Consensus 243 ~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~ 322 (944)
+|+..|+++++.+|++......++.++...|+ .+++.+.++...+..|.+
T Consensus 164 ~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~------------------------------~~~~~~~l~~~~~~~~~~ 213 (280)
T PF13429_consen 164 KALRDYRKALELDPDDPDARNALAWLLIDMGD------------------------------YDEAREALKRLLKAAPDD 213 (280)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCH------------------------------HHHHHHHHHHHHHH-HTS
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCC------------------------------hHHHHHHHHHHHHHCcCH
Confidence 66666666666666555555444444333222 244444444444444444
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 002273 323 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALS 385 (944)
Q Consensus 323 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 385 (944)
+..+..+|.++...|++++|+.+|+++++.+|+++..+..+|.++...|+.++|.++++++++
T Consensus 214 ~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 214 PDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp CCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred HHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 455555566666666666666666666666666666666666666666666666666655543
No 56
>PRK12370 invasion protein regulator; Provisional
Probab=99.82 E-value=6.7e-18 Score=197.86 Aligned_cols=195 Identities=17% Similarity=0.081 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC---------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 002273 64 FVDALALYEIVLEKDSGNVEAHIGKGICLQMQN---------MGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVE 134 (944)
Q Consensus 64 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 134 (944)
+++|+.+|+++++.+|+++.++..+|.++...+ ++++|+..++++++++|+++.++..+|.++...|++++
T Consensus 277 ~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~ 356 (553)
T PRK12370 277 LQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIV 356 (553)
T ss_pred HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHH
Confidence 344555555555555555555544444443221 24445555555555555555555555555555555555
Q ss_pred HHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002273 135 AAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 214 (944)
Q Consensus 135 A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 214 (944)
|+..|+++++++|++..+ ++.+|.++...|++++|+..++++++++|.+...+..++.+++..|++++|+..+
T Consensus 357 A~~~~~~Al~l~P~~~~a-------~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 357 GSLLFKQANLLSPISADI-------KYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred HHHHHHHHHHhCCCCHHH-------HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence 555555555555544332 3334444444455555555555555555544444333444444444455555555
Q ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 002273 215 EKAALER-PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 265 (944)
Q Consensus 215 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 265 (944)
+++++.. |+++..+..+|.++..+|++++|...++++....|........+
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l 481 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLL 481 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHH
Confidence 4444432 34444444445555455555555554444444444433333333
No 57
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.6e-17 Score=170.43 Aligned_cols=299 Identities=17% Similarity=0.098 Sum_probs=165.7
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 002273 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVE 134 (944)
Q Consensus 55 A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 134 (944)
|.++....-+.-+..++-+-...-|+|...+..+|.+++..|++.+|+..|+++.-++|.+....-..|.++...|+++.
T Consensus 205 Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~ 284 (564)
T KOG1174|consen 205 AQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQ 284 (564)
T ss_pred HHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhh
Confidence 33333333444444455555555666666677777777777777777777777766677666666666666666666666
Q ss_pred HHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002273 135 AAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 214 (944)
Q Consensus 135 A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 214 (944)
-.......+......... ++--+..++..++++.|+.+-+++++.+|.+..++...|.++...++.++|+-.|
T Consensus 285 ~~~L~~~Lf~~~~~ta~~-------wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaF 357 (564)
T KOG1174|consen 285 DSALMDYLFAKVKYTASH-------WFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAF 357 (564)
T ss_pred HHHHHHHHHhhhhcchhh-------hhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHH
Confidence 666655555554333222 3333444445566666666666666666666666666666666666666666666
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH-HHHHHhhhhhhhhHHHHHhhcCCCCCc
Q 002273 215 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA-IALTDLGTKTYGRALLLFRLNGSNFQS 293 (944)
Q Consensus 215 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la-~~l~~~~~~~~~~a~~~~~~~~~~~~~ 293 (944)
+.+..+.|...+.|..+..+|...|++.+|...-..+++..|.+..+...++ .++..-
T Consensus 358 R~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~d--------------------- 416 (564)
T KOG1174|consen 358 RTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPD--------------------- 416 (564)
T ss_pred HHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccC---------------------
Confidence 6666666666666666666666666666666666666666555554443332 111100
Q ss_pred hhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCH
Q 002273 294 PFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL 373 (944)
Q Consensus 294 ~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 373 (944)
..--++|.+++++.+.+.|....+...++.++...|.+++++.++++.+...|+ ...+..||.++...+.+
T Consensus 417 --------p~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~ 487 (564)
T KOG1174|consen 417 --------PRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEP 487 (564)
T ss_pred --------chhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhH
Confidence 001144444444444444444444444444444444444444444444444433 22344444444444444
Q ss_pred HHHHHHHHHHHhhCCCC
Q 002273 374 DKAVECYQMALSIKPNF 390 (944)
Q Consensus 374 ~~A~~~~~~al~~~p~~ 390 (944)
++|.++|..|+.++|++
T Consensus 488 Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 488 QKAMEYYYKALRQDPKS 504 (564)
T ss_pred HHHHHHHHHHHhcCccc
Confidence 44444444444444443
No 58
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.82 E-value=1.2e-17 Score=187.99 Aligned_cols=390 Identities=19% Similarity=0.186 Sum_probs=293.2
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002273 61 RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYH 140 (944)
Q Consensus 61 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 140 (944)
+++...|...|-+++++++..+.++..+|.+|...-+...|.++|++|.++|+.+..+....+..|.+..+++.|....-
T Consensus 471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred HHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002273 141 KALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE 220 (944)
Q Consensus 141 ~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 220 (944)
.+-+..|.... ...+..+|..|...++..+|+..|+.++..+|.+...|..+|.+|...|+|..|++.|.++..+
T Consensus 551 ~~~qka~a~~~-----k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L 625 (1238)
T KOG1127|consen 551 RAAQKAPAFAC-----KENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL 625 (1238)
T ss_pred HHhhhchHHHH-----HhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc
Confidence 66665554322 2235558999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHH------------HHh---
Q 002273 221 RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALL------------LFR--- 285 (944)
Q Consensus 221 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~------------~~~--- 285 (944)
+|.+....+..+.+....|+|.+|+..+...+............++.++.+.........+. .+.
T Consensus 626 rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l 705 (1238)
T KOG1127|consen 626 RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSL 705 (1238)
T ss_pred CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998887666666666666665544331111110 000
Q ss_pred ----------------------hcCCCCCch-hHHHhhh----cCCH------HHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002273 286 ----------------------LNGSNFQSP-FFELVKL----EGDI------NQGVAYYKKALYYNWHYADAMYNLGVA 332 (944)
Q Consensus 286 ----------------------~~~~~~~~~-~~~l~~~----~~~~------~~A~~~~~~al~~~p~~~~~~~~la~~ 332 (944)
...+.+... +..++.. .+.. --+.+++-..++... ++..|+++|..
T Consensus 706 ~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~-~~~~WyNLGin 784 (1238)
T KOG1127|consen 706 IHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAI-HMYPWYNLGIN 784 (1238)
T ss_pred HHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhh-ccchHHHHhHH
Confidence 000001110 0111111 0000 112233333332221 14557777766
Q ss_pred HHH--------cCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 002273 333 YGE--------MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ 404 (944)
Q Consensus 333 ~~~--------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 404 (944)
|.+ +.+...|+.++.+++++..++...|+.||.+ ...|++.-|..+|-+.+...|.....|.|+|.++.+.
T Consensus 785 ylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n 863 (1238)
T KOG1127|consen 785 YLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLEN 863 (1238)
T ss_pred HHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEec
Confidence 655 1233467788888888887778888888777 5557777888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002273 405 GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 457 (944)
Q Consensus 405 g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~ 457 (944)
.+++.|...|.++..++|.+...|...+.+....|+.-++...|...-++.-.
T Consensus 864 ~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~ 916 (1238)
T KOG1127|consen 864 QDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSK 916 (1238)
T ss_pred ccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhcc
Confidence 88888888888888888888888888888888888777777777775554443
No 59
>PRK12370 invasion protein regulator; Provisional
Probab=99.82 E-value=8.6e-18 Score=196.94 Aligned_cols=244 Identities=12% Similarity=-0.000 Sum_probs=135.1
Q ss_pred ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 002273 172 NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL---------MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLE 242 (944)
Q Consensus 172 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 242 (944)
++++|+..|+++++.+|+++.++..+|.+|... +++++|+..++++++++|+++.++..+|.++...|+++
T Consensus 276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~ 355 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYI 355 (553)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHH
Confidence 456777777777777777777777777665533 23666777777777777777777777777776677777
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCC
Q 002273 243 SAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHY 322 (944)
Q Consensus 243 ~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~ 322 (944)
+|+..|+++++++|++..++..++.++... |++++|+..++++++.+|.+
T Consensus 356 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~------------------------------G~~~eAi~~~~~Al~l~P~~ 405 (553)
T PRK12370 356 VGSLLFKQANLLSPISADIKYYYGWNLFMA------------------------------GQLEEALQTINECLKLDPTR 405 (553)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHC------------------------------CCHHHHHHHHHHHHhcCCCC
Confidence 777666666666666665555555444332 23355555555555555555
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 002273 323 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFN-PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVY 401 (944)
Q Consensus 323 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 401 (944)
+..+..++.++...|++++|+..+++++... |+++..+..+|.++...|++++|+..+++.....|....+...++..|
T Consensus 406 ~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~ 485 (553)
T PRK12370 406 AAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEY 485 (553)
T ss_pred hhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHH
Confidence 4444444444444555555555555555443 444555555555555555555555555555555555555555555555
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002273 402 TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 447 (944)
Q Consensus 402 ~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~ 447 (944)
...|+ +|...+++.++.......-...+..+|.-.|+.+.+..+
T Consensus 486 ~~~g~--~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 529 (553)
T PRK12370 486 CQNSE--RALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW 529 (553)
T ss_pred hccHH--HHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH
Confidence 54442 444444444333221111122244444444554444444
No 60
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.81 E-value=1.1e-18 Score=187.51 Aligned_cols=259 Identities=20% Similarity=0.284 Sum_probs=198.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 002273 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240 (944)
Q Consensus 161 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 240 (944)
+..|..+.+.|+..+|.-+|+.+++.+|.+.++|..||.+....++-..|+..++++++++|++.+++..||..|...|.
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 45788889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCC
Q 002273 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNW 320 (944)
Q Consensus 241 ~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p 320 (944)
-.+|+.++.+-+...|........ +.. ..+... .-......+....++|-.+....|
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a--------~~~-------------~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~ 425 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSA--------GEN-------------EDFENT--KSFLDSSHLAHIQELFLEAARQLP 425 (579)
T ss_pred HHHHHHHHHHHHHhCccchhcccc--------Ccc-------------ccccCC--cCCCCHHHHHHHHHHHHHHHHhCC
Confidence 999999999998887764321100 000 000000 000111123445566666666677
Q ss_pred --CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 002273 321 --HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 398 (944)
Q Consensus 321 --~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 398 (944)
.++++...||.+|.-.|+|++|+.+|+.++..+|++...|+.||..+....+.++|+..|.+|+++.|.+..+++++|
T Consensus 426 ~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlg 505 (579)
T KOG1125|consen 426 TKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLG 505 (579)
T ss_pred CCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhh
Confidence 578888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHcCCHH
Q 002273 399 VVYTVQGKMDAAAEMIEKAIAANPTY----------AEAYNNLGVLYRDAGSIS 442 (944)
Q Consensus 399 ~~~~~~g~~~~A~~~l~~al~~~p~~----------~~a~~~la~~~~~~g~~~ 442 (944)
..+..+|.|++|.++|-.||.+.+.. ..+|..|-.++...++.+
T Consensus 506 IS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 506 ISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred hhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 88888888888888888888775431 134444444444455444
No 61
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.81 E-value=1.3e-18 Score=172.99 Aligned_cols=280 Identities=19% Similarity=0.250 Sum_probs=239.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcC---CCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 002273 124 ILYKDEGRLVEAAESYHKALSAD---PSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVV 200 (944)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 200 (944)
.+++..++...|-......++.. |.....-..--.--..+|.+|...|.+.+|.+.++.+++..| .++.+..|+.+
T Consensus 187 y~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskv 265 (478)
T KOG1129|consen 187 YLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKV 265 (478)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHH
Confidence 34556667777665555544432 211111000001135689999999999999999999999776 58899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhH
Q 002273 201 YSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRA 280 (944)
Q Consensus 201 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a 280 (944)
|.+..+...|+..+.+.++..|.+...+...++++..++++++|+++|+.+++.+|.+.++...++.-
T Consensus 266 Y~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~------------ 333 (478)
T KOG1129|consen 266 YQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVG------------ 333 (478)
T ss_pred HHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeec------------
Confidence 99999999999999999999999999999999999999999999999999999999988776554443
Q ss_pred HHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC---CCH
Q 002273 281 LLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP---HCA 357 (944)
Q Consensus 281 ~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~ 357 (944)
+...++.+-|+.+|++.+++.-.+++.+.++|.+++..++++-++..|++++.... .-.
T Consensus 334 ------------------yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aa 395 (478)
T KOG1129|consen 334 ------------------YFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAA 395 (478)
T ss_pred ------------------cccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhh
Confidence 34456679999999999999999999999999999999999999999999998743 237
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002273 358 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 434 (944)
Q Consensus 358 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~ 434 (944)
++|+++|.+....|++.-|.++|+-++..++++.+++.+||.+-.+.|+.++|..+++.+-...|+-.+..++++.+
T Consensus 396 DvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~~ 472 (478)
T KOG1129|consen 396 DVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQFM 472 (478)
T ss_pred hhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccceeEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999988888877654
No 62
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.81 E-value=2e-16 Score=177.69 Aligned_cols=293 Identities=10% Similarity=-0.010 Sum_probs=142.1
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHH
Q 002273 87 GKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC-GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGT 165 (944)
Q Consensus 87 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~ 165 (944)
..|......|++++|.+...+..+..+ ++..++.+ +......|+++.|..++.++.+..|++... .....+.
T Consensus 89 ~~gl~a~~eGd~~~A~k~l~~~~~~~~-~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~------~~l~~a~ 161 (398)
T PRK10747 89 EQALLKLAEGDYQQVEKLMTRNADHAE-QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLP------VEITRVR 161 (398)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhccc-chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHH------HHHHHHH
Confidence 344444445555555544444333221 22222222 333355555555555555555554443221 0112244
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--------HHHHHHHHHHH
Q 002273 166 SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE--------AYCNMGVIYKN 237 (944)
Q Consensus 166 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--------~~~~la~~~~~ 237 (944)
++...|++++|+..+++..+.+|+++.++..++.+|...|++++|++.+.++.+..+.+.. ++..+......
T Consensus 162 l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~ 241 (398)
T PRK10747 162 IQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMA 241 (398)
T ss_pred HHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555555555555555555555555444333222 11111111112
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHH
Q 002273 238 RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALY 317 (944)
Q Consensus 238 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~ 317 (944)
..+.+...+.++..-+..|+++.....++..+...| +.++|...++++++
T Consensus 242 ~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g------------------------------~~~~A~~~L~~~l~ 291 (398)
T PRK10747 242 DQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECD------------------------------DHDTAQQIILDGLK 291 (398)
T ss_pred hcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCC------------------------------CHHHHHHHHHHHHh
Confidence 222233333333333333444445444444443332 22555555555555
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 002273 318 YNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 397 (944)
Q Consensus 318 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 397 (944)
. +.++......+.+ ..++.+++++.+++.++.+|+++..+..+|.++...+++++|.++|+++++..|++. .+..+
T Consensus 292 ~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~L 367 (398)
T PRK10747 292 R-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWL 367 (398)
T ss_pred c-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHH
Confidence 2 2233322222222 236666666666666666666666666666666666666666666666666666643 34456
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Q 002273 398 GVVYTVQGKMDAAAEMIEKAIAA 420 (944)
Q Consensus 398 a~~~~~~g~~~~A~~~l~~al~~ 420 (944)
+.++.++|+.++|.++|++++.+
T Consensus 368 a~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 368 ADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh
Confidence 66666666666666666666554
No 63
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.81 E-value=1.3e-16 Score=176.67 Aligned_cols=372 Identities=16% Similarity=0.097 Sum_probs=298.8
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHH-HHHHhCCHHHHHHHHHHHHhcC-----CCCHHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKD--SGNVEAHIGKGI-CLQMQNMGRLAFDSFSEAVKLD-----PQNACA 118 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~-----p~~~~~ 118 (944)
..+.|..++..+...|.-..|+.+.++.+... |.+...+...+. |....+.+++++++..+++... --.+.+
T Consensus 356 ~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~ 435 (799)
T KOG4162|consen 356 EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRG 435 (799)
T ss_pred hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhH
Confidence 56788999999999999999999999999988 777666655554 5567899999999999999842 123567
Q ss_pred HHHHHHHHHHc-----------CCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-
Q 002273 119 HTHCGILYKDE-----------GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI- 186 (944)
Q Consensus 119 ~~~la~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~- 186 (944)
+..+|.+|-.+ -...++++.++++++.+|.++.+ .+.++.-|..+++.+.|+....++++.
T Consensus 436 ~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~-------if~lalq~A~~R~l~sAl~~~~eaL~l~ 508 (799)
T KOG4162|consen 436 YLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLV-------IFYLALQYAEQRQLTSALDYAREALALN 508 (799)
T ss_pred HHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchH-------HHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 88888877543 23568899999999999999875 677888888999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 002273 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266 (944)
Q Consensus 187 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 266 (944)
..+++.+|..++.++...+++.+|+.+.+.+++..++|.........+-...++.++|+..+...+..-.....+...++
T Consensus 509 ~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~ 588 (799)
T KOG4162|consen 509 RGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLD 588 (799)
T ss_pred CCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhh
Confidence 56688999999999999999999999999999999998887777777888899999999988877765432221111111
Q ss_pred HHHH---------Hhhhh-------hhhhHHHHHh--------------hcCCCC---------CchhHHHhhhcCCHHH
Q 002273 267 IALT---------DLGTK-------TYGRALLLFR--------------LNGSNF---------QSPFFELVKLEGDINQ 307 (944)
Q Consensus 267 ~~l~---------~~~~~-------~~~~a~~~~~--------------~~~~~~---------~~~~~~l~~~~~~~~~ 307 (944)
.... ...+. .+.......+ ....+. +......+...++.++
T Consensus 589 ~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~ 668 (799)
T KOG4162|consen 589 EGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDE 668 (799)
T ss_pred hhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchH
Confidence 0000 00000 0000000000 000000 0123356677888899
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHH--HHHHHHh
Q 002273 308 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE--CYQMALS 385 (944)
Q Consensus 308 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~ 385 (944)
|..++.++-++.|..+..|+..|.++...|+..+|.+.|..++.++|+++.....+|.++.+.|+..-|.. .+..+++
T Consensus 669 a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr 748 (799)
T KOG4162|consen 669 ARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALR 748 (799)
T ss_pred HHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999888888 9999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 002273 386 IKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 425 (944)
Q Consensus 386 ~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~ 425 (944)
++|.++++|+.+|.++.+.|+.++|.++|+.++++.+.+|
T Consensus 749 ~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 749 LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 9999999999999999999999999999999999987764
No 64
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.81 E-value=1.3e-18 Score=187.06 Aligned_cols=266 Identities=21% Similarity=0.268 Sum_probs=219.5
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (944)
+...-|..|..++++|+..+|.-+|+.+++.+|+++++|..||.+....++-..|+..++++++++|+|..++..||..|
T Consensus 284 ~~pdPf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSy 363 (579)
T KOG1125|consen 284 DHPDPFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSY 363 (579)
T ss_pred CCCChHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 34456889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHc
Q 002273 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP--HYAPAYYNLGVVYSEL 204 (944)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~ 204 (944)
...|.-.+|..++.+-+...|........--...............+..-.+.|.++....| .+++++..||.+|...
T Consensus 364 tNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls 443 (579)
T KOG1125|consen 364 TNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLS 443 (579)
T ss_pred hhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcc
Confidence 99999999999999999988764321000000000000001111223455667777777777 6899999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 002273 205 MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLF 284 (944)
Q Consensus 205 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~ 284 (944)
|+|++|+.+|+.++...|++...|..||-.+....+.++|+..|.+|+++.|.+..+++++|..+..+|.
T Consensus 444 ~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~---------- 513 (579)
T KOG1125|consen 444 GEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGA---------- 513 (579)
T ss_pred hHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhh----------
Confidence 9999999999999999999999999999999999999999999999999999999999999999887765
Q ss_pred hhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHcCChHHH
Q 002273 285 RLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHY----------ADAMYNLGVAYGEMLKFDMA 342 (944)
Q Consensus 285 ~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~----------~~~~~~la~~~~~~g~~~~A 342 (944)
|++|.++|-.++.+.+.. ..+|-.|-.++...++.|-+
T Consensus 514 --------------------ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 514 --------------------YKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred --------------------HHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 499999999999886541 13555555555555655543
No 65
>PLN03077 Protein ECB2; Provisional
Probab=99.80 E-value=1.4e-16 Score=197.99 Aligned_cols=393 Identities=9% Similarity=-0.014 Sum_probs=319.9
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCCHHHHHHHHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL--DPQNACAHTHCGI 124 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~ 124 (944)
+...+..+...|.+.|++++|.++|+++.+ .+...|..+...|.+.|++++|++.|+++.+. .|+. ..+..+-.
T Consensus 322 d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~-~t~~~ll~ 397 (857)
T PLN03077 322 DVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDE-ITIASVLS 397 (857)
T ss_pred chHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCc-eeHHHHHH
Confidence 566677788899999999999999998743 46678999999999999999999999998764 3554 35555566
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 002273 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204 (944)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 204 (944)
.+.+.|++++|.+.++.+.+....... .++..+...|.+.|++++|.+.|++..+ .+...|..+...|.+.
T Consensus 398 a~~~~g~~~~a~~l~~~~~~~g~~~~~------~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~ 468 (857)
T PLN03077 398 ACACLGDLDVGVKLHELAERKGLISYV------VVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLN 468 (857)
T ss_pred HHhccchHHHHHHHHHHHHHhCCCcch------HHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHC
Confidence 888999999999999999887554322 2467788889999999999999998654 3567899999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhhhhhhhhHHHH
Q 002273 205 MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP-NFEIAKNNMAIALTDLGTKTYGRALLL 283 (944)
Q Consensus 205 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~~a~~~ 283 (944)
|++++|+..|+++....+.+...+..+-..+.+.|+.+.+.+.+..+++..- .+......+...|.+.|+...+..+..
T Consensus 469 g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~ 548 (857)
T PLN03077 469 NRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN 548 (857)
T ss_pred CCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999876555667777788888899999999999998887643 234456677788888887766655544
Q ss_pred HhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC--CCCHHHH
Q 002273 284 FRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNW-HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN--PHCAEAC 360 (944)
Q Consensus 284 ~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~ 360 (944)
....+...+..++..+...|+.++|++.|++..+... .+..++..+...+.+.|+.++|.++|+.+.+.. ..+...|
T Consensus 549 ~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y 628 (857)
T PLN03077 549 SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHY 628 (857)
T ss_pred hcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHH
Confidence 4322223344667788899999999999999887532 245567777788999999999999999998543 2246789
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 002273 361 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS 440 (944)
Q Consensus 361 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~ 440 (944)
..+..++.+.|++++|.+.+++. ...|+ ..+|..+-..+...|+.+.+....++++++.|++...|..++.+|...|+
T Consensus 629 ~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~ 706 (857)
T PLN03077 629 ACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGK 706 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCC
Confidence 99999999999999999999885 35555 67788887888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 002273 441 ISLAIDAYEQCLKI 454 (944)
Q Consensus 441 ~~eA~~~~~~al~l 454 (944)
+++|.+..+...+.
T Consensus 707 ~~~a~~vr~~M~~~ 720 (857)
T PLN03077 707 WDEVARVRKTMREN 720 (857)
T ss_pred hHHHHHHHHHHHHc
Confidence 99999998877543
No 66
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.79 E-value=4.6e-17 Score=156.08 Aligned_cols=213 Identities=24% Similarity=0.249 Sum_probs=196.9
Q ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 002273 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (944)
Q Consensus 44 ~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (944)
.....++.+.+|..|+++|++..|...++++|+.+|++..+|..++.+|...|+.+.|.+.|+++++++|++.+++.+.|
T Consensus 31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG 110 (250)
T COG3063 31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYG 110 (250)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhh
Confidence 33457889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002273 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE 203 (944)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 203 (944)
..++.+|++++|...|++++. +|.... .+..+.++|.|..+.|+++.|...|+++++.+|+.+.....++..++.
T Consensus 111 ~FLC~qg~~~eA~q~F~~Al~-~P~Y~~----~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~ 185 (250)
T COG3063 111 AFLCAQGRPEEAMQQFERALA-DPAYGE----PSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYK 185 (250)
T ss_pred HHHHhCCChHHHHHHHHHHHh-CCCCCC----cchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHh
Confidence 999999999999999999986 344333 255689999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Q 002273 204 LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 261 (944)
Q Consensus 204 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 261 (944)
.|+|-.|..++++.....+-..+.+.....+-...|+-+.+-.+=.+.....|...+.
T Consensus 186 ~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 186 AGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred cccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 9999999999999998888888888888899999999999998888888888887654
No 67
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=6.4e-18 Score=173.89 Aligned_cols=299 Identities=17% Similarity=0.141 Sum_probs=219.4
Q ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 002273 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (944)
Q Consensus 46 ~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (944)
..++.....+..++++.+|.+|+..|..+++..|+++..|...+.++...+++++|....++.++++|..+..+...+.+
T Consensus 47 ~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c 126 (486)
T KOG0550|consen 47 QQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQC 126 (486)
T ss_pred HHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhh
Confidence 35677888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC---CCCHHHHHHHHHHHH
Q 002273 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID---PHYAPAYYNLGVVYS 202 (944)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~la~~~~ 202 (944)
+...++..+|.+.++. ..+ + ....|+..+++.+..+ |....+...-+.++.
T Consensus 127 ~~a~~~~i~A~~~~~~--------~~~-------~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~ 180 (486)
T KOG0550|consen 127 HLALSDLIEAEEKLKS--------KQA-------Y-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLA 180 (486)
T ss_pred hhhhHHHHHHHHHhhh--------hhh-------h-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhh
Confidence 9999999999888871 111 0 1223444444444332 444566677889999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHH
Q 002273 203 ELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALL 282 (944)
Q Consensus 203 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~ 282 (944)
..|++++|...--..+++++.+.++++..|.+++..++.+.|+..|++++.++|+...+....
T Consensus 181 ~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~----------------- 243 (486)
T KOG0550|consen 181 FLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSAS----------------- 243 (486)
T ss_pred hcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHh-----------------
Confidence 999999999999999999999999999999999999999999999999999999865432111
Q ss_pred HHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC----HH
Q 002273 283 LFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC----AE 358 (944)
Q Consensus 283 ~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~ 358 (944)
..|+....+..-|.-.++.|++.+|.+.|..++.++|++ +.
T Consensus 244 -----------------------------------~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nak 288 (486)
T KOG0550|consen 244 -----------------------------------MMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAK 288 (486)
T ss_pred -----------------------------------hhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHH
Confidence 011112344455666666666666666666666666654 33
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 002273 359 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 422 (944)
Q Consensus 359 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p 422 (944)
.|.+++.+....|+..+|+...+.++++++....++...|.++..++++++|.+.|+++++...
T Consensus 289 lY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 289 LYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4455555555555555555555555555555555555555555555555555555555555443
No 68
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.78 E-value=9.2e-16 Score=153.44 Aligned_cols=322 Identities=19% Similarity=0.191 Sum_probs=254.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHH
Q 002273 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY-----AEAYCNMGVIYKN 237 (944)
Q Consensus 163 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~ 237 (944)
.|..+...++.++|+..|.++++.+|...++...||.+|...|..+.|+.+-+..++. |+. .-+...||.-|+.
T Consensus 41 ~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~ 119 (389)
T COG2956 41 KGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMA 119 (389)
T ss_pred hHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHH
Confidence 4566667799999999999999999999999999999999999999999998887664 432 3478899999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHH
Q 002273 238 RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALY 317 (944)
Q Consensus 238 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~ 317 (944)
.|-++.|...|....+...--..+...+..+ |....+|++|++..++..+
T Consensus 120 aGl~DRAE~~f~~L~de~efa~~AlqqLl~I------------------------------YQ~treW~KAId~A~~L~k 169 (389)
T COG2956 120 AGLLDRAEDIFNQLVDEGEFAEGALQQLLNI------------------------------YQATREWEKAIDVAERLVK 169 (389)
T ss_pred hhhhhHHHHHHHHHhcchhhhHHHHHHHHHH------------------------------HHHhhHHHHHHHHHHHHHH
Confidence 9999999999999877544444455444444 5556778999999999999
Q ss_pred hCCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCC-H
Q 002273 318 YNWHY-----ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF-S 391 (944)
Q Consensus 318 ~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~ 391 (944)
..++. +..+..++..+....+.+.|+..+.++++.+|++..+-..+|.++...|+|++|++.++.+++.+|+. +
T Consensus 170 ~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~ 249 (389)
T COG2956 170 LGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLS 249 (389)
T ss_pred cCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHH
Confidence 88765 46788999999999999999999999999999999999999999999999999999999999999987 5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhhHHHHhhh
Q 002273 392 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNY 471 (944)
Q Consensus 392 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~~~~~~~ 471 (944)
++...|..+|.++|+.++.+..+.++.+..+. +++...++.+-....-.+.|..++.+-+...|+-...+.-.-+.++-
T Consensus 250 evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~d 328 (389)
T COG2956 250 EVLEMLYECYAQLGKPAEGLNFLRRAMETNTG-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLAD 328 (389)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhcc
Confidence 68899999999999999999999999998877 56666777777777778899999999999999854333211122222
Q ss_pred ccCCChHHHHHHHHHHHHHHhhhccCCCCCCCCCCCCCCcEEEeecCCCccCcHH
Q 002273 472 INEGHDDKLFEAHRDWGKRFMRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVS 526 (944)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lriGy~S~d~~~h~v~ 526 (944)
..+|...+.+-..+....+..+..+ .=|.-++||-+.-|.+|.-+
T Consensus 329 aeeg~~k~sL~~lr~mvge~l~~~~----------~YRC~~CGF~a~~l~W~CPs 373 (389)
T COG2956 329 AEEGRAKESLDLLRDMVGEQLRRKP----------RYRCQNCGFTAHTLYWHCPS 373 (389)
T ss_pred ccccchhhhHHHHHHHHHHHHhhcC----------CceecccCCcceeeeeeCCC
Confidence 2333333333333333222222111 13566788888888777643
No 69
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.78 E-value=1.8e-16 Score=170.40 Aligned_cols=232 Identities=18% Similarity=0.123 Sum_probs=157.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 002273 129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYD 208 (944)
Q Consensus 129 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 208 (944)
.++.+.++..+.+++...+-++. ..+..++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|+++
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~---~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~ 115 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDE---ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFD 115 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcH---hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHH
Confidence 45678888888888875554332 235568889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcC
Q 002273 209 TALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNG 288 (944)
Q Consensus 209 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~ 288 (944)
+|+..|+++++++|++..++.++|.++...|++++|++.|+++++.+|+++..... ..+
T Consensus 116 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~--~~l------------------- 174 (296)
T PRK11189 116 AAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALW--LYL------------------- 174 (296)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH--HHH-------------------
Confidence 99999999999999999999999999999999999999999999999987631111 000
Q ss_pred CCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH-------hhCCCCHHHHH
Q 002273 289 SNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF-------HFNPHCAEACN 361 (944)
Q Consensus 289 ~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al-------~~~p~~~~~~~ 361 (944)
....+++++|+..+++.....+.. .+. .+.++...|+..++ ..++.+. ++.|...++|+
T Consensus 175 ----------~~~~~~~~~A~~~l~~~~~~~~~~--~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~ 240 (296)
T PRK11189 175 ----------AESKLDPKQAKENLKQRYEKLDKE--QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYF 240 (296)
T ss_pred ----------HHccCCHHHHHHHHHHHHhhCCcc--ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 122345677777776655433221 111 23444445554332 1222222 33334445555
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCC-CCHHHHHHHH
Q 002273 362 NLGVIYKDRDNLDKAVECYQMALSIKP-NFSQSLNNLG 398 (944)
Q Consensus 362 ~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la 398 (944)
++|.++...|++++|+.+|+++++.+| ++.+..+.+.
T Consensus 241 ~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~ 278 (296)
T PRK11189 241 YLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALL 278 (296)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 555555555555555555555555553 3344333333
No 70
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=5.6e-14 Score=146.86 Aligned_cols=400 Identities=15% Similarity=0.094 Sum_probs=322.0
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (944)
+...|+..|.--..++++..|..+|+++|..+..+...|+..+.+-++......|...+++++.+-|.--..|+....+-
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymE 151 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYME 151 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 44567777888888999999999999999999999999999999999999999999999999999999989999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 002273 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206 (944)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 206 (944)
..+|+...|.+.|++-++..|+.. + +......-.+.+..+.|...|++-+-.+|+ ...|...+..-.+.|+
T Consensus 152 E~LgNi~gaRqiferW~~w~P~eq-a-------W~sfI~fElRykeieraR~IYerfV~~HP~-v~~wikyarFE~k~g~ 222 (677)
T KOG1915|consen 152 EMLGNIAGARQIFERWMEWEPDEQ-A-------WLSFIKFELRYKEIERARSIYERFVLVHPK-VSNWIKYARFEEKHGN 222 (677)
T ss_pred HHhcccHHHHHHHHHHHcCCCcHH-H-------HHHHHHHHHHhhHHHHHHHHHHHHheeccc-HHHHHHHHHHHHhcCc
Confidence 999999999999999999999843 2 344444455678899999999999988885 6788899999999999
Q ss_pred HHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHhhhhhhhhHH
Q 002273 207 YDTALGCYEKAALERPMYA---EAYCNMGVIYKNRGDLESAIACYERCLAVSPNF--EIAKNNMAIALTDLGTKTYGRAL 281 (944)
Q Consensus 207 ~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~l~~~~~~~~~~a~ 281 (944)
...|...|+++++.-.++. ..+...|..-..+..++.|.-.|+-+++.-|.+ ...+..+...-.+.|+..-.+..
T Consensus 223 ~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~ 302 (677)
T KOG1915|consen 223 VALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDA 302 (677)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHH
Confidence 9999999999998755432 345556666777889999999999999999887 44444444444444543221111
Q ss_pred HHH----------hhcCCCCCc--hhHHHhhhcCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHH-HHHcCCh
Q 002273 282 LLF----------RLNGSNFQS--PFFELVKLEGDINQGVAYYKKALYYNWHYAD---------AMYNLGVA-YGEMLKF 339 (944)
Q Consensus 282 ~~~----------~~~~~~~~~--~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~---------~~~~la~~-~~~~g~~ 339 (944)
... ..++.++.. .+..+....|+.+.-.+.|++++...|...+ .|.+.+.. -....+.
T Consensus 303 Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ 382 (677)
T KOG1915|consen 303 IVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDV 382 (677)
T ss_pred HhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 111 112222222 4556777889999999999999988776332 23333221 2456789
Q ss_pred HHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002273 340 DMAIVFYELAFHFNPHC----AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIE 415 (944)
Q Consensus 340 ~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~ 415 (944)
+.+.+.|+.++++-|.. +.+|...|....++.+...|.+.+-.|+...|.+ ...-....+-.++++++....+|+
T Consensus 383 ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRcRkLYE 461 (677)
T KOG1915|consen 383 ERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRCRKLYE 461 (677)
T ss_pred HHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999999998864 7788899999999999999999999999999984 455556667788999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 002273 416 KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 456 (944)
Q Consensus 416 ~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P 456 (944)
+.++..|.+..+|...|.+-..+|+.+.|...|+-|++...
T Consensus 462 kfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ 502 (677)
T KOG1915|consen 462 KFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPA 502 (677)
T ss_pred HHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc
Confidence 99999999999999999999999999999999999987543
No 71
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.76 E-value=2.6e-16 Score=169.15 Aligned_cols=100 Identities=24% Similarity=0.345 Sum_probs=73.2
Q ss_pred CChHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002273 171 GNTQDGIQKYYEALKIDP----HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIA 246 (944)
Q Consensus 171 g~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 246 (944)
+..+.++..+.+++...+ ..+..++.+|.+|...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 455677777777775333 2356678888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHH
Q 002273 247 CYERCLAVSPNFEIAKNNMAIALT 270 (944)
Q Consensus 247 ~~~~al~~~p~~~~~~~~la~~l~ 270 (944)
.|+++++++|++..++.+++.++.
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~ 143 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHH
Confidence 888877777776655555554443
No 72
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.76 E-value=2.6e-16 Score=177.38 Aligned_cols=407 Identities=18% Similarity=0.181 Sum_probs=306.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH--------------------------HHhCCHHHHHHH
Q 002273 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICL--------------------------QMQNMGRLAFDS 104 (944)
Q Consensus 51 ~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~--------------------------~~~g~~~~A~~~ 104 (944)
...++.+....+.|.+|...+..+....- +-+.+..+..|+ +...+...|...
T Consensus 402 ~~akgl~~ie~~~y~Daa~tl~lv~~~s~-nd~slselswc~~~~~ek~mdva~~~~~e~~~~w~a~~~~rK~~~~al~a 480 (1238)
T KOG1127|consen 402 QRAKGLAPIEANVYTDAAITLDLVSSLSF-NDDSLSELSWCLPRALEKMMDVALLLECENSEFWVALGCMRKNSALALHA 480 (1238)
T ss_pred hhhcchhHHHHhhchHHHHHHHHHHHhhc-CchhhhHhhHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 45556666667777777777776665541 111111111111 234457889999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002273 105 FSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEAL 184 (944)
Q Consensus 105 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al 184 (944)
|-+++++++..+.++..+|.+|....+...|..+|++|.++++.+..+ ....+..|....+++.|......+-
T Consensus 481 li~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaea-------aaa~adtyae~~~we~a~~I~l~~~ 553 (1238)
T KOG1127|consen 481 LIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEA-------AAASADTYAEESTWEEAFEICLRAA 553 (1238)
T ss_pred HHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhh-------HHHHHHHhhccccHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999998776 4455666777899999999977777
Q ss_pred hhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 002273 185 KIDPHY--APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262 (944)
Q Consensus 185 ~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 262 (944)
+..|.. ...|..+|..|.+.++...|+..|+.++..+|.+.+.|..+|.+|...|++..|++.|.++..++|.+....
T Consensus 554 qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~ 633 (1238)
T KOG1127|consen 554 QKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGR 633 (1238)
T ss_pred hhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHH
Confidence 766643 345667999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHhhc----CCCCCchhH-------HHhhhcCCHHHHHHHHHHHHHhC--------CCCH
Q 002273 263 NNMAIALTDLGTKTYGRALLLFRLN----GSNFQSPFF-------ELVKLEGDINQGVAYYKKALYYN--------WHYA 323 (944)
Q Consensus 263 ~~la~~l~~~~~~~~~~a~~~~~~~----~~~~~~~~~-------~l~~~~~~~~~A~~~~~~al~~~--------p~~~ 323 (944)
+..+.+....|+...+......... ....+..++ ..+...|-..+|..++++.++.. -++.
T Consensus 634 fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~ 713 (1238)
T KOG1127|consen 634 FKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDR 713 (1238)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhH
Confidence 9999999988887655444322111 111222222 23344566677888888776541 1222
Q ss_pred HHHHHHHHHHHHc-----------------------CCh------HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-----
Q 002273 324 DAMYNLGVAYGEM-----------------------LKF------DMAIVFYELAFHFNPHCAEACNNLGVIYKD----- 369 (944)
Q Consensus 324 ~~~~~la~~~~~~-----------------------g~~------~~A~~~~~~al~~~p~~~~~~~~la~~~~~----- 369 (944)
..|..++.++.-. +.. --+.+++-..+++.. .+..|+++|..|+.
T Consensus 714 ~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~-~~~~WyNLGinylr~f~~l 792 (1238)
T KOG1127|consen 714 LQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAI-HMYPWYNLGINYLRYFLLL 792 (1238)
T ss_pred HHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhh-ccchHHHHhHHHHHHHHHc
Confidence 2333333322111 100 112333333333222 25678888888775
Q ss_pred ---CCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002273 370 ---RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAID 446 (944)
Q Consensus 370 ---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~ 446 (944)
+.+...|+.++++++++..++...|..||.+ ...|++.-|..+|-+.+...|.....|.++|.++....+++.|..
T Consensus 793 ~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~ 871 (1238)
T KOG1127|consen 793 GETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEP 871 (1238)
T ss_pred CCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhH
Confidence 2345689999999999999999999999998 667999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCChhhhhhHHH
Q 002273 447 AYEQCLKIDPDSRNAGQNRLL 467 (944)
Q Consensus 447 ~~~~al~l~P~~~~a~~~~~~ 467 (944)
.|.++..++|.+...+....+
T Consensus 872 af~~~qSLdP~nl~~WlG~Al 892 (1238)
T KOG1127|consen 872 AFSSVQSLDPLNLVQWLGEAL 892 (1238)
T ss_pred HHHhhhhcCchhhHHHHHHHH
Confidence 999999999999887766433
No 73
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.76 E-value=4.3e-16 Score=162.36 Aligned_cols=206 Identities=20% Similarity=0.163 Sum_probs=189.1
Q ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 002273 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (944)
Q Consensus 45 ~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (944)
...+..++.+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|++.++++++..|.+..++..+|.
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 107 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGT 107 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 002273 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204 (944)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 204 (944)
++...|++++|+..+++++...+... ....+..+|.++...|++++|...++++++.+|++...+..+|.++...
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 182 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQ-----PARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLR 182 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhcccccc-----chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHc
Confidence 99999999999999999998543211 1234677899999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 002273 205 MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS 255 (944)
Q Consensus 205 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 255 (944)
|++++|+..++++++..|.+...+..++.++...|+.++|..+.+.+....
T Consensus 183 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 183 GQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF 233 (234)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 999999999999999988889999999999999999999999988876654
No 74
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.75 E-value=1.4e-14 Score=156.09 Aligned_cols=415 Identities=13% Similarity=0.033 Sum_probs=281.2
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (944)
...+++..-..+...|+|++|.+...+++...|++..++...-.++.+.++|++|+...++-......+ ...+..+.|.
T Consensus 11 ~~~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~ 89 (652)
T KOG2376|consen 11 NLEALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCE 89 (652)
T ss_pred cHHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHH
Confidence 347888888999999999999999999999999999999999999999999999996554433222222 2237899999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC------------------
Q 002273 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP------------------ 188 (944)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------------------ 188 (944)
++++..++|+..++ ..++.+... +...+.+++++|+|++|+..|+..++.+.
T Consensus 90 Yrlnk~Dealk~~~---~~~~~~~~l-------l~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l 159 (652)
T KOG2376|consen 90 YRLNKLDEALKTLK---GLDRLDDKL-------LELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL 159 (652)
T ss_pred HHcccHHHHHHHHh---cccccchHH-------HHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh
Confidence 99999999999998 334443333 45566777788999999999988755422
Q ss_pred ------------C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CC-------CHHHHHHHHHHHHHcCC
Q 002273 189 ------------H-YAPAYYNLGVVYSELMQYDTALGCYEKAALER--------PM-------YAEAYCNMGVIYKNRGD 240 (944)
Q Consensus 189 ------------~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~-------~~~~~~~la~~~~~~g~ 240 (944)
+ ..+.+++.+.++...|+|.+|++.+++++.+. .+ -..+...++.++..+|+
T Consensus 160 ~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq 239 (652)
T KOG2376|consen 160 QVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ 239 (652)
T ss_pred hHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc
Confidence 1 35678899999999999999999999995431 11 12367788999999999
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhh-h--hhhHHHHHhhcCCCCCc----------------hhHHHhhh
Q 002273 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK-T--YGRALLLFRLNGSNFQS----------------PFFELVKL 301 (944)
Q Consensus 241 ~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~-~--~~~a~~~~~~~~~~~~~----------------~~~~l~~~ 301 (944)
.++|...|...++.+|.+.........-+..+... . ....+.........+.. ...-+...
T Consensus 240 t~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~ 319 (652)
T KOG2376|consen 240 TAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF 319 (652)
T ss_pred hHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887654332222211111110 0 00000000000000000 00111112
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHCCCHHHHHHHH
Q 002273 302 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC-AEACNNLGVIYKDRDNLDKAVECY 380 (944)
Q Consensus 302 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~ 380 (944)
.+.-+.+.+...+.-...|...--.............+.+|++++....+.+|.. ..+...++.+...+|+++.|++.+
T Consensus 320 tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il 399 (652)
T KOG2376|consen 320 TNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEIL 399 (652)
T ss_pred hhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 2233333333333222233322222222333333337899999999999999987 778888999999999999999999
Q ss_pred HHHHhhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002273 381 QMALSIK-------PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA-------NPTYAEAYNNLGVLYRDAGSISLAID 446 (944)
Q Consensus 381 ~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~-------~p~~~~a~~~la~~~~~~g~~~eA~~ 446 (944)
...++.. ...+.+-..+-..++..++-+.|...+.+++.- .+.....+..++....+.|+.++|..
T Consensus 400 ~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s 479 (652)
T KOG2376|consen 400 SLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASS 479 (652)
T ss_pred HHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHH
Confidence 9443221 123444555556677777777777777777653 22223455567777788899999999
Q ss_pred HHHHHHhhCCCChhhhhhHHHHhhhc
Q 002273 447 AYEQCLKIDPDSRNAGQNRLLAMNYI 472 (944)
Q Consensus 447 ~~~~al~l~P~~~~a~~~~~~~~~~~ 472 (944)
.+++.++.+|++.++...+..++.++
T Consensus 480 ~leel~k~n~~d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 480 LLEELVKFNPNDTDLLVQLVTAYARL 505 (652)
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHhc
Confidence 99999999999999988887777665
No 75
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.75 E-value=4e-16 Score=149.67 Aligned_cols=155 Identities=21% Similarity=0.174 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 002273 306 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF--NPHCAEACNNLGVIYKDRDNLDKAVECYQMA 383 (944)
Q Consensus 306 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 383 (944)
+.|.+.|+++++++|++.+++++.|..++.+|++++|...|++++.. .+..+..+.++|.|..+.|+++.|.++|+++
T Consensus 86 ~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~ra 165 (250)
T COG3063 86 DLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRA 165 (250)
T ss_pred hhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHH
Confidence 44444555555555555666667777777777777777777777764 3455677888888888888888888888888
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChh
Q 002273 384 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 460 (944)
Q Consensus 384 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~ 460 (944)
++++|+++.....++..+++.|++-.|..++++.....+-..+.+....++-...|+-+.|-++=.+..+..|...+
T Consensus 166 L~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 166 LELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 88888888888888888888888888888888877777766777777777777888888777777777777777654
No 76
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.75 E-value=8.6e-15 Score=159.25 Aligned_cols=348 Identities=13% Similarity=0.123 Sum_probs=258.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHH
Q 002273 82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLT 161 (944)
Q Consensus 82 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 161 (944)
...++..+.-.+..++|.+.++..+..++..|++++.+...|..+..+|+-++|......++..++...- +|.
T Consensus 7 E~~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~v-------CwH 79 (700)
T KOG1156|consen 7 ENALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHV-------CWH 79 (700)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccch-------hHH
Confidence 3456667777788999999999999999999999999999999999999999999999999998888765 477
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 002273 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDL 241 (944)
Q Consensus 162 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 241 (944)
-+|.++....+|++|+++|+.|+..+|+|..++..++.+..++++++.....-.+.++..|..-..|...+..+...|++
T Consensus 80 v~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y 159 (700)
T KOG1156|consen 80 VLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEY 159 (700)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence 78888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhC---CCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHh
Q 002273 242 ESAIACYERCLAVS---PNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYY 318 (944)
Q Consensus 242 ~~A~~~~~~al~~~---p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~ 318 (944)
..|...++...+.. |+....-......+.. . .....|.+++|++.+..--..
T Consensus 160 ~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n--~-----------------------i~~E~g~~q~ale~L~~~e~~ 214 (700)
T KOG1156|consen 160 KMALEILEEFEKTQNTSPSKEDYEHSELLLYQN--Q-----------------------ILIEAGSLQKALEHLLDNEKQ 214 (700)
T ss_pred HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHH--H-----------------------HHHHcccHHHHHHHHHhhhhH
Confidence 99999988877655 3322222122221111 1 144456667777766554433
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHH-HHHHHHHhhCCCCH------
Q 002273 319 NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAV-ECYQMALSIKPNFS------ 391 (944)
Q Consensus 319 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~------ 391 (944)
.-+........+.++.+++++++|...|...+..+|++...+..+-.++..-.+--+++ ..|...-+..|...
T Consensus 215 i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlp 294 (700)
T KOG1156|consen 215 IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLP 294 (700)
T ss_pred HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhcc
Confidence 33344566678999999999999999999999999999998888877775333333444 55555444433210
Q ss_pred -------HHHHHHHHHH---HHc-------------CCHHHHHHHHHHHHHh-----C--------------CCC--HHH
Q 002273 392 -------QSLNNLGVVY---TVQ-------------GKMDAAAEMIEKAIAA-----N--------------PTY--AEA 427 (944)
Q Consensus 392 -------~~~~~la~~~---~~~-------------g~~~~A~~~l~~al~~-----~--------------p~~--~~a 427 (944)
+....+..++ .+. .+..+. ..+++.+.. . |-. ...
T Consensus 295 lsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~-~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt 373 (700)
T KOG1156|consen 295 LSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKV-AFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWT 373 (700)
T ss_pred HHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHh-HHHHHHHHHHHhhcccccCCCcccccccCCchHHHHH
Confidence 0000000000 001 111111 133333221 1 111 345
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhh
Q 002273 428 YNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 462 (944)
Q Consensus 428 ~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~ 462 (944)
++.++.-+...|+++.|..+...|+...|.-.+-+
T Consensus 374 ~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly 408 (700)
T KOG1156|consen 374 LYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELY 408 (700)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHH
Confidence 67789999999999999999999999999876655
No 77
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.75 E-value=6.1e-16 Score=171.94 Aligned_cols=260 Identities=17% Similarity=0.116 Sum_probs=170.6
Q ss_pred HHHHHHHhHhCCccEEEecCCCCCCC---chhhhccCCcceee--ecc-cCCCCCCCCCc----------cE--EEecCC
Q 002273 578 EKKVAAMVREDKIDILVELTGHTANN---KLGMMACQPAPVQV--TWI-GYPNTTGLPTI----------DY--RITDSL 639 (944)
Q Consensus 578 ~~~~a~~i~~d~idilvdl~g~t~~~---~~~~~a~r~ApvQ~--~~~-G~p~t~g~~~~----------Dy--~i~d~~ 639 (944)
-..++..|++.++||+ ||... ..+.++.+.|.+-+ +.. |++...+-..+ |. ..+| +
T Consensus 269 ~~~l~~~ir~~rpDIV-----Ht~~~~a~l~g~laA~lagvpviv~~~h~~~~~~~~r~~~~e~~~~~~a~~i~~~sd-~ 342 (578)
T PRK15490 269 IKHLVPHLCERKLDYL-----SVWQDGACLMIALAALIAGVPRIQLGLRGLPPVVRKRLFKPEYEPLYQALAVVPGVD-F 342 (578)
T ss_pred HHHHHHHHHHcCCCEE-----EEcCcccHHHHHHHHHhcCCCEEEEeecccCCcchhhHHHHHHHHhhhhceeEecch-h
Confidence 4679999999999999 66433 45555666655544 332 23322221100 11 1122 2
Q ss_pred CCCccc-cc-------ccccceEEcCCCccc--cCCCCCCC-CCCC--CCCCCCCCeEEEecCC--CCcCCHHHHHHHHH
Q 002273 640 ADPPET-KQ-------KHVEELIRLPECFLC--YTPSPEAG-PVCP--TPALTNGFITFGSFNN--LAKITPKVLQVWAR 704 (944)
Q Consensus 640 ~~p~~~-~~-------~~~e~~~~lp~~~~~--~~~~~~~~-~~~~--~~~~~~~~~~f~~~~~--~~K~~~~~~~~~~~ 704 (944)
+.-... .+ .-.+++..+|+..-. |.|....+ ..+. ..+++.+.+++|++.+ ..|.....++++.+
T Consensus 343 v~~s~~v~~~l~~~lgip~~KI~VIyNGVD~~rf~p~~~~~~~~r~~~~~~l~~~~~vIg~VgRl~~~Kg~~~LI~A~a~ 422 (578)
T PRK15490 343 MSNNHCVTRHYADWLKLEAKHFQVVYNGVLPPSTEPSSEVPHKIWQQFTQKTQDADTTIGGVFRFVGDKNPFAWIDFAAR 422 (578)
T ss_pred hhccHHHHHHHHHHhCCCHHHEEEEeCCcchhhcCccchhhHHHHHHhhhccCCCCcEEEEEEEEehhcCHHHHHHHHHH
Confidence 211111 11 124677788864311 22221111 0000 1233455567787775 48999999999999
Q ss_pred HHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCC-CCcccHHHhhh
Q 002273 705 ILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLY 783 (944)
Q Consensus 705 il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~ 783 (944)
+++..|+.+|+++|.+ ..++.+++.++++|+ .++|.|+|.. .+....|..+||++-|+-+ +.|.+.+|||+
T Consensus 423 llk~~pdirLvIVGdG----~~~eeLk~la~elgL-~d~V~FlG~~---~Dv~~~LaaADVfVlPS~~EGfp~vlLEAMA 494 (578)
T PRK15490 423 YLQHHPATRFVLVGDG----DLRAEAQKRAEQLGI-LERILFVGAS---RDVGYWLQKMNVFILFSRYEGLPNVLIEAQM 494 (578)
T ss_pred HHhHCCCeEEEEEeCc----hhHHHHHHHHHHcCC-CCcEEECCCh---hhHHHHHHhCCEEEEcccccCccHHHHHHHH
Confidence 9999999999999876 567788899999999 5899999984 4566678889999888766 66999999999
Q ss_pred cCCcEEecCCCcccccchhHHHhhcCCcccc--------cC--CHHH---HHHHHHHHhcCHHHHHHHHHHHHHHhhcCC
Q 002273 784 MGVPCVTMAGSVHAHNVGVSLLTKVGLKHLI--------AK--NEDE---YVQLALQLASDVTALANLRMSLRDLMSKSP 850 (944)
Q Consensus 784 ~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v--------~~--~~~~---y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~ 850 (944)
||+|||+ +++| |.+|+| +. |.++ -+..+.++..+...+..+++..|+.+. .
T Consensus 495 ~GlPVVA-------TdvG-------G~~EiV~dG~nG~LVp~~D~~aLa~ai~lA~aL~~ll~~~~~mg~~ARe~V~--e 558 (578)
T PRK15490 495 VGVPVIS-------TPAG-------GSAECFIEGVSGFILDDAQTVNLDQACRYAEKLVNLWRSRTGICQQTQSFLQ--E 558 (578)
T ss_pred hCCCEEE-------eCCC-------CcHHHcccCCcEEEECCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--h
Confidence 9999999 7776 554443 32 3333 333345556666555667777787765 4
Q ss_pred CCChHHHHHHHHHHHHH
Q 002273 851 VCDGQNFALGLESTYRN 867 (944)
Q Consensus 851 ~~~~~~~~~~~e~~~~~ 867 (944)
.|+.+.++..++++|..
T Consensus 559 ~FS~e~Mv~~y~ki~~~ 575 (578)
T PRK15490 559 RFTVEHMVGTFVKTIAS 575 (578)
T ss_pred hCCHHHHHHHHHHHHHh
Confidence 49999999999999853
No 78
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=7.7e-17 Score=166.04 Aligned_cols=286 Identities=20% Similarity=0.194 Sum_probs=239.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002273 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK 236 (944)
Q Consensus 157 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 236 (944)
+.-....|..++...+|.+|+..|..+++..|+++..|.+.+..++..++|++|.-..++.++++|.....+...+.++.
T Consensus 49 Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~ 128 (486)
T KOG0550|consen 49 AEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHL 128 (486)
T ss_pred HHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhh
Confidence 34456677778888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCC---CCchhHHHhhhcCCHHHHHHHHH
Q 002273 237 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSN---FQSPFFELVKLEGDINQGVAYYK 313 (944)
Q Consensus 237 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~A~~~~~ 313 (944)
..++..+|.+.++.. .++ ..+..+-.+... .......+. ....-..++...+++++|...--
T Consensus 129 a~~~~i~A~~~~~~~--------~~~-~~anal~~~~~~------~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~ 193 (486)
T KOG0550|consen 129 ALSDLIEAEEKLKSK--------QAY-KAANALPTLEKL------APSHSREPACFKAKLLKAECLAFLGDYDEAQSEAI 193 (486)
T ss_pred hhHHHHHHHHHhhhh--------hhh-HHhhhhhhhhcc------cccccCCchhhHHHHhhhhhhhhcccchhHHHHHH
Confidence 999999998887721 111 111111110000 000000000 00012345667899999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH------------HHHHHHHHHHHHCCCHHHHHHHHH
Q 002273 314 KALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA------------EACNNLGVIYKDRDNLDKAVECYQ 381 (944)
Q Consensus 314 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------------~~~~~la~~~~~~g~~~~A~~~~~ 381 (944)
..+++++.+.++++..|.++...++.+.|+..|++++.++|+.. ..+..-|.-.++.|++.+|.++|.
T Consensus 194 ~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yt 273 (486)
T KOG0550|consen 194 DILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYT 273 (486)
T ss_pred HHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHH
Confidence 99999999999999999999999999999999999999999863 456667888899999999999999
Q ss_pred HHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002273 382 MALSIKPNF----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 457 (944)
Q Consensus 382 ~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~ 457 (944)
.++.++|++ +..|.+++.+...+|+..+|+...+.++++++....++...|.|+..+++|++|.+.|+++++...+
T Consensus 274 eal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 274 EALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 999999986 4578999999999999999999999999999999999999999999999999999999999998877
No 79
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.74 E-value=1.1e-15 Score=159.20 Aligned_cols=202 Identities=26% Similarity=0.291 Sum_probs=146.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 002273 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 270 (944)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~ 270 (944)
...+..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|++.++++++..|.+.
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~----------- 99 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNG----------- 99 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-----------
Confidence 566777777777777777777777777777777777777777777777777777777777666655544
Q ss_pred HhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002273 271 DLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 350 (944)
Q Consensus 271 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 350 (944)
..+..+|.++...|++++|+..+++++
T Consensus 100 -----------------------------------------------------~~~~~~~~~~~~~g~~~~A~~~~~~~~ 126 (234)
T TIGR02521 100 -----------------------------------------------------DVLNNYGTFLCQQGKYEQAMQQFEQAI 126 (234)
T ss_pred -----------------------------------------------------HHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 445555666666666666666666666
Q ss_pred hhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 002273 351 HFN--PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 428 (944)
Q Consensus 351 ~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~ 428 (944)
... +.....+..+|.++...|++++|...++++++.+|++...+..+|.++...|++++|+.+++++++..|.++..+
T Consensus 127 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 206 (234)
T TIGR02521 127 EDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESL 206 (234)
T ss_pred hccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 542 344566777777777888888888888888887777777777888888888888888888888877777777777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 002273 429 NNLGVLYRDAGSISLAIDAYEQCLKIDP 456 (944)
Q Consensus 429 ~~la~~~~~~g~~~eA~~~~~~al~l~P 456 (944)
..++.++...|+.++|..+.+.+....|
T Consensus 207 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 207 WLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 7777888888888888777777665543
No 80
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.72 E-value=8.1e-15 Score=163.14 Aligned_cols=238 Identities=23% Similarity=0.324 Sum_probs=195.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Q 002273 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE--------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS--- 255 (944)
Q Consensus 187 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--- 255 (944)
+|....+...++..|...|+|++|+..++.+++. .|.-......+|.+|..++++.+|+..|++++.+.
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 5666777788999999999999999999999987 44445556679999999999999999999999873
Q ss_pred -----CCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCC--------CC
Q 002273 256 -----PNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNW--------HY 322 (944)
Q Consensus 256 -----p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p--------~~ 322 (944)
|.-...+.+|+.+ |...|++++|..++++++++.. .-
T Consensus 275 ~G~~h~~va~~l~nLa~l------------------------------y~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v 324 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVL------------------------------YYKQGKFAEAEEYCERALEIYEKLLGASHPEV 324 (508)
T ss_pred cCCCCHHHHHHHHHHHHH------------------------------HhccCChHHHHHHHHHHHHHHHHhhccChHHH
Confidence 2223344455544 4556777888888888877632 23
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-------
Q 002273 323 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFN--------PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK------- 387 (944)
Q Consensus 323 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------- 387 (944)
...+.+++.++..++++++|+.++++++++. +.-+..+.++|.+|..+|++++|.++|++|+++.
T Consensus 325 ~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~ 404 (508)
T KOG1840|consen 325 AAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKK 404 (508)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCc
Confidence 4578889999999999999999999999872 2346789999999999999999999999999874
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002273 388 -PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA-------NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 454 (944)
Q Consensus 388 -p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~-------~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l 454 (944)
+.....+.++|..|.+.+++.+|...|.+++.+ .|+....+.+|+.+|..+|++++|+++.++++..
T Consensus 405 ~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 405 DYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred ChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 233568899999999999999999999999876 3555678999999999999999999999998853
No 81
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.72 E-value=1.5e-14 Score=144.86 Aligned_cols=297 Identities=19% Similarity=0.189 Sum_probs=245.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-----HHHH
Q 002273 120 THCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY-----APAY 194 (944)
Q Consensus 120 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~ 194 (944)
+..|.-+.-.++.++|+..|...++.+|...++ ...+|+.+...|..+.|+..-+..++ .|+. ..+.
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~-------~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl 110 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEA-------HLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLAL 110 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhcCchhhHH-------HHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHH
Confidence 345666677889999999999999999887665 67889999999999999998877665 4443 4578
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhh
Q 002273 195 YNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGT 274 (944)
Q Consensus 195 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~ 274 (944)
..||.-|+..|-++.|...|....+...--..++..|..+|....++++|++.-++..++.+... ...++..|+.+..
T Consensus 111 ~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~--~~eIAqfyCELAq 188 (389)
T COG2956 111 QQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTY--RVEIAQFYCELAQ 188 (389)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccc--hhHHHHHHHHHHH
Confidence 89999999999999999999999887666678999999999999999999999999999988754 3456777777765
Q ss_pred hhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 002273 275 KTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP 354 (944)
Q Consensus 275 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 354 (944)
. +....+.+.|+..++++++.+|+...+-..+|.++...|+|++|++.++.+++.+|
T Consensus 189 ~-----------------------~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~ 245 (389)
T COG2956 189 Q-----------------------ALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNP 245 (389)
T ss_pred H-----------------------HhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhCh
Confidence 5 66677889999999999999999999999999999999999999999999999999
Q ss_pred CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002273 355 HC-AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 433 (944)
Q Consensus 355 ~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~ 433 (944)
+. +++...|..+|.+.|+.++.+..+.++.+..++ +++...++..-....-.+.|..++.+-+...|+--. .+.+..
T Consensus 246 ~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~g-f~rl~~ 323 (389)
T COG2956 246 EYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRG-FHRLMD 323 (389)
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHH-HHHHHH
Confidence 87 778889999999999999999999999998876 455666777777777788999999999999998443 333333
Q ss_pred HHHH---cCCHHHHHHHHHHH
Q 002273 434 LYRD---AGSISLAIDAYEQC 451 (944)
Q Consensus 434 ~~~~---~g~~~eA~~~~~~a 451 (944)
.... .|...+.+..+++.
T Consensus 324 ~~l~daeeg~~k~sL~~lr~m 344 (389)
T COG2956 324 YHLADAEEGRAKESLDLLRDM 344 (389)
T ss_pred hhhccccccchhhhHHHHHHH
Confidence 3222 23344444444444
No 82
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.71 E-value=7.3e-14 Score=140.87 Aligned_cols=375 Identities=15% Similarity=0.115 Sum_probs=239.1
Q ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 002273 56 NILRSRNKFVDALALYEIVLEKDSGN-VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVE 134 (944)
Q Consensus 56 ~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 134 (944)
.-++.+.+|..|+.+++-.+..+.+. ...-..+|.|++..|+|++|+..|.-+.+.+.-+.+.+.+++.+++-+|.|.+
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~e 109 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIE 109 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHH
Confidence 45677899999999999887665443 35677899999999999999999999988777778899999999999999999
Q ss_pred HHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002273 135 AAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 214 (944)
Q Consensus 135 A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 214 (944)
|...-.++ |+.+-- .++++.++ .+.++-++ +..|.+.++. ..+-...|+.+.+..-.|++|++.|
T Consensus 110 A~~~~~ka----~k~pL~----~RLlfhla---hklndEk~-~~~fh~~LqD---~~EdqLSLAsvhYmR~HYQeAIdvY 174 (557)
T KOG3785|consen 110 AKSIAEKA----PKTPLC----IRLLFHLA---HKLNDEKR-ILTFHSSLQD---TLEDQLSLASVHYMRMHYQEAIDVY 174 (557)
T ss_pred HHHHHhhC----CCChHH----HHHHHHHH---HHhCcHHH-HHHHHHHHhh---hHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 98877665 444332 22233333 23444333 3334443332 2345667888888888999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCch
Q 002273 215 EKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSP 294 (944)
Q Consensus 215 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~ 294 (944)
++++..+|+....-..++.+|.++.-++-+.+.+.-.++..|+...+...++..+.++-....++........+....-.
T Consensus 175 krvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~ 254 (557)
T KOG3785|consen 175 KRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYP 254 (557)
T ss_pred HHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccch
Confidence 99999999988888899999999999999999999999999999998888887776654433333322222111111111
Q ss_pred hHHHhhh-----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002273 295 FFELVKL-----EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD 369 (944)
Q Consensus 295 ~~~l~~~-----~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 369 (944)
.++-+.+ -.+-+.|++.+-..++.- +++..++...|.++++.++|+.+.+ +++|..+.-+...|.+...
T Consensus 255 f~~~l~rHNLVvFrngEgALqVLP~L~~~I---PEARlNL~iYyL~q~dVqeA~~L~K---dl~PttP~EyilKgvv~aa 328 (557)
T KOG3785|consen 255 FIEYLCRHNLVVFRNGEGALQVLPSLMKHI---PEARLNLIIYYLNQNDVQEAISLCK---DLDPTTPYEYILKGVVFAA 328 (557)
T ss_pred hHHHHHHcCeEEEeCCccHHHhchHHHhhC---hHhhhhheeeecccccHHHHHHHHh---hcCCCChHHHHHHHHHHHH
Confidence 1111110 112233444443333322 4556666666666666666665554 3466666666666666666
Q ss_pred CCCHHHHHHHHHHHH---hhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 002273 370 RDNLDKAVECYQMAL---SIK------PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS 440 (944)
Q Consensus 370 ~g~~~~A~~~~~~al---~~~------p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~ 440 (944)
.|+--...+.++-|- .+- -+.......+|.+++-..++++-+.++...-...-++....+++++++...|+
T Consensus 329 lGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgn 408 (557)
T KOG3785|consen 329 LGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGN 408 (557)
T ss_pred hhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcC
Confidence 554433333332222 111 11112233445555555566666666655555555555556666666666666
Q ss_pred HHHHHHHHHHH
Q 002273 441 ISLAIDAYEQC 451 (944)
Q Consensus 441 ~~eA~~~~~~a 451 (944)
+.+|.+.|-+.
T Consensus 409 y~eaEelf~~i 419 (557)
T KOG3785|consen 409 YVEAEELFIRI 419 (557)
T ss_pred hHHHHHHHhhh
Confidence 66666665544
No 83
>PLN02789 farnesyltranstransferase
Probab=99.71 E-value=2.6e-15 Score=160.63 Aligned_cols=210 Identities=12% Similarity=0.061 Sum_probs=166.1
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhh
Q 002273 201 YSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG-DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGR 279 (944)
Q Consensus 201 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 279 (944)
+...+++++|+..+.++++++|.+..+|...+.++..+| ++++++..+.++++.+|++..+|...+.++..++..
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~---- 122 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPD---- 122 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCch----
Confidence 334566777888888888888888888888888877777 567888888888888888877777777666554421
Q ss_pred HHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHH
Q 002273 280 ALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA 359 (944)
Q Consensus 280 a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 359 (944)
.+++++.+++++++.+|++..+|...+.++...|++++|+++++++++.+|.+..+
T Consensus 123 ------------------------~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sA 178 (320)
T PLN02789 123 ------------------------AANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSA 178 (320)
T ss_pred ------------------------hhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhH
Confidence 12567778888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHC---CCH----HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHH
Q 002273 360 CNNLGVIYKDR---DNL----DKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAEAY 428 (944)
Q Consensus 360 ~~~la~~~~~~---g~~----~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~l~~al~~~p~~~~a~ 428 (944)
|+..+.++... |.+ ++++++..+++.++|++..+|..++.++.. +++..+|++.+.++++..|.+..++
T Consensus 179 W~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al 258 (320)
T PLN02789 179 WNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFAL 258 (320)
T ss_pred HHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHH
Confidence 88888887665 222 567888889999999999999988888877 4556778888888888888888888
Q ss_pred HHHHHHHHHc
Q 002273 429 NNLGVLYRDA 438 (944)
Q Consensus 429 ~~la~~~~~~ 438 (944)
..|+.+|...
T Consensus 259 ~~l~d~~~~~ 268 (320)
T PLN02789 259 SDLLDLLCEG 268 (320)
T ss_pred HHHHHHHHhh
Confidence 8899888763
No 84
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.71 E-value=6.1e-15 Score=164.13 Aligned_cols=241 Identities=25% Similarity=0.347 Sum_probs=194.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Q 002273 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKI--------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE-------- 220 (944)
Q Consensus 157 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------- 220 (944)
..+...++..|..+|++++|+..++.+++. .|.-......+|.+|..++++++|+..|++++.+
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345666999999999999999999999998 5555566667999999999999999999999975
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHh
Q 002273 221 RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE-IAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELV 299 (944)
Q Consensus 221 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~ 299 (944)
+|....++.+||.+|...|++++|..++++++++..... ...-.++..+..++ .++
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~-----------------------~~~ 335 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELA-----------------------AIL 335 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHH-----------------------HHH
Confidence 344567899999999999999999999999998743300 00111111222211 225
Q ss_pred hhcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC--------CCCHHHHHHH
Q 002273 300 KLEGDINQGVAYYKKALYYN--------WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN--------PHCAEACNNL 363 (944)
Q Consensus 300 ~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l 363 (944)
...+++++|..++++++++. +.-+..+.++|.+|..+|++++|.++|++++.+. +.....+..+
T Consensus 336 ~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~l 415 (508)
T KOG1840|consen 336 QSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQL 415 (508)
T ss_pred HHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHH
Confidence 56778899999999888763 2335789999999999999999999999999873 2335688899
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002273 364 GVIYKDRDNLDKAVECYQMALSI-------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 420 (944)
Q Consensus 364 a~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 420 (944)
|..|.+.+++.+|.+.|.++..+ .|+....+.+|+.+|..+|++++|+++.++++..
T Consensus 416 a~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 416 AEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNA 479 (508)
T ss_pred HHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 99999999999999999998876 3455668999999999999999999999999854
No 85
>PLN02789 farnesyltranstransferase
Probab=99.69 E-value=1.4e-14 Score=155.05 Aligned_cols=211 Identities=11% Similarity=0.017 Sum_probs=147.9
Q ss_pred cCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 002273 129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG-NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQY 207 (944)
Q Consensus 129 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 207 (944)
.++.++|+..+.++++++|++..++ ...+.++...+ ++++++..++++++.+|++..+|+..+.++...++.
T Consensus 50 ~e~serAL~lt~~aI~lnP~~ytaW-------~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 50 DERSPRALDLTADVIRLNPGNYTVW-------HFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred CCCCHHHHHHHHHHHHHCchhHHHH-------HHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCch
Confidence 4555666666666666666665543 33333333344 456777777777777777777777777777766653
Q ss_pred --HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHh
Q 002273 208 --DTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFR 285 (944)
Q Consensus 208 --~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~ 285 (944)
++++.+++++++.+|.+..+|...+.++...|+++++++++.++++.+|.+..+|...+.++..++..
T Consensus 123 ~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l---------- 192 (320)
T PLN02789 123 AANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLL---------- 192 (320)
T ss_pred hhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccc----------
Confidence 56777777888888888888888888888888888888888888888888877777777666544211
Q ss_pred hcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCCCHHHHH
Q 002273 286 LNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE----MLKFDMAIVFYELAFHFNPHCAEACN 361 (944)
Q Consensus 286 ~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~ 361 (944)
.......++++++..+++..+|++..+|..++.++.. .++..+|+..+.+++..+|.++.++.
T Consensus 193 -------------~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~ 259 (320)
T PLN02789 193 -------------GGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALS 259 (320)
T ss_pred -------------ccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHH
Confidence 0001123567888888888999988888888888877 34556788888888888888888888
Q ss_pred HHHHHHHH
Q 002273 362 NLGVIYKD 369 (944)
Q Consensus 362 ~la~~~~~ 369 (944)
.|+.+|..
T Consensus 260 ~l~d~~~~ 267 (320)
T PLN02789 260 DLLDLLCE 267 (320)
T ss_pred HHHHHHHh
Confidence 88888865
No 86
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.68 E-value=1.4e-13 Score=153.85 Aligned_cols=314 Identities=14% Similarity=0.042 Sum_probs=203.1
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHh
Q 002273 78 DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAE 154 (944)
Q Consensus 78 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 154 (944)
+|+.+.++..+|.++...|+.+++.+.+.++.+..|.+ .+.....+.++...|++++|...++++++.+|++.....
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 67888888888888888888888888888877766644 445667778888888888888888888888888764422
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002273 155 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVI 234 (944)
Q Consensus 155 ~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 234 (944)
. +..+..+| ...+....+.+.+......+|.....+..+|.++...|++++|+..++++++..|++..++..+|.+
T Consensus 82 ~-~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i 157 (355)
T cd05804 82 L-HLGAFGLG---DFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHV 157 (355)
T ss_pred H-hHHHHHhc---ccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence 2 11222222 1234444444444443345666677777888888888888888888888888888888888888888
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHH
Q 002273 235 YKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKK 314 (944)
Q Consensus 235 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~ 314 (944)
+...|++++|+..+++++...|......
T Consensus 158 ~~~~g~~~eA~~~l~~~l~~~~~~~~~~---------------------------------------------------- 185 (355)
T cd05804 158 LEMQGRFKEGIAFMESWRDTWDCSSMLR---------------------------------------------------- 185 (355)
T ss_pred HHHcCCHHHHHHHHHhhhhccCCCcchh----------------------------------------------------
Confidence 8888888888888888887766421110
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--CHHHHH---HHHHHHHHCCCHHHHHHH---HHHHHhh
Q 002273 315 ALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH--CAEACN---NLGVIYKDRDNLDKAVEC---YQMALSI 386 (944)
Q Consensus 315 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~---~la~~~~~~g~~~~A~~~---~~~al~~ 386 (944)
...+..++.++...|++++|+..|++++...|. ...... .+...+...|....+..+ .......
T Consensus 186 --------~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~ 257 (355)
T cd05804 186 --------GHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWH 257 (355)
T ss_pred --------HHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhh
Confidence 123445666666667777777777666554441 111111 111222223322222221 1111111
Q ss_pred CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 002273 387 KPN--FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT---------YAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 455 (944)
Q Consensus 387 ~p~--~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~---------~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~ 455 (944)
.+. ........+.++...|+.++|...++........ ...+....+.++...|++++|.+.+..++.+-
T Consensus 258 ~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 258 FPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred cCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 111 1222335677777888888888888777554322 24566778888899999999999999988765
No 87
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=5e-12 Score=132.53 Aligned_cols=408 Identities=15% Similarity=0.058 Sum_probs=302.3
Q ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 002273 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (944)
Q Consensus 46 ~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (944)
-....|+..|..-+++.....|..++++++..-|.-...|+.....-..+|+...|.+.|++-++..|+. .+|......
T Consensus 105 r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~e-qaW~sfI~f 183 (677)
T KOG1915|consen 105 RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDE-QAWLSFIKF 183 (677)
T ss_pred ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcH-HHHHHHHHH
Confidence 3566789999999999999999999999999999999999999999999999999999999999999864 677777788
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHH
Q 002273 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY---APAYYNLGVVYS 202 (944)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~ 202 (944)
-.+.++.+.|...|++.+-..|+-.. +...+..-...|+...|...|++|++.-.++ ...+...|..-.
T Consensus 184 ElRykeieraR~IYerfV~~HP~v~~--------wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe 255 (677)
T KOG1915|consen 184 ELRYKEIERARSIYERFVLVHPKVSN--------WIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEE 255 (677)
T ss_pred HHHhhHHHHHHHHHHHHheecccHHH--------HHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 88888899999999999888887332 5566666677788888888888887764443 223444455555
Q ss_pred HcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHH---HHH-----HHHHHHHHhCCCcHHHHHHHHHHHHHh
Q 002273 203 ELMQYDTALGCYEKAALERPMY--AEAYCNMGVIYKNRGDLE---SAI-----ACYERCLAVSPNFEIAKNNMAIALTDL 272 (944)
Q Consensus 203 ~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~---~A~-----~~~~~al~~~p~~~~~~~~la~~l~~~ 272 (944)
.++.++.|.-+|+-++..-|.+ .+.+......--+-|+.. +++ -.|++.+..+|-+.++|..+..+....
T Consensus 256 ~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~ 335 (677)
T KOG1915|consen 256 RQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESV 335 (677)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhc
Confidence 6667777777777777766654 222222222222333322 222 135555666666666666666655555
Q ss_pred hhhhhhhHHHHHhhcCCCCCc------hhH------HH--hhhcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHH
Q 002273 273 GTKTYGRALLLFRLNGSNFQS------PFF------EL--VKLEGDINQGVAYYKKALYYNWHY----ADAMYNLGVAYG 334 (944)
Q Consensus 273 ~~~~~~~a~~~~~~~~~~~~~------~~~------~l--~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~ 334 (944)
|..............+....+ .++ .+ -....+.+.+.+.|+.++++-|.. +.+|...|....
T Consensus 336 g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feI 415 (677)
T KOG1915|consen 336 GDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEI 415 (677)
T ss_pred CCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHH
Confidence 544333332222222111111 111 11 123578899999999999998874 678999999999
Q ss_pred HcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002273 335 EMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMI 414 (944)
Q Consensus 335 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l 414 (944)
++.+...|.+.+-.++-..|.+ ........+-.+.++++....+|++-++..|.+..+|...|.+-..+|+.+.|...|
T Consensus 416 Rq~~l~~ARkiLG~AIG~cPK~-KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaif 494 (677)
T KOG1915|consen 416 RQLNLTGARKILGNAIGKCPKD-KLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIF 494 (677)
T ss_pred HHcccHHHHHHHHHHhccCCch-hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHH
Confidence 9999999999999999999984 455556677778899999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCC-HH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhh
Q 002273 415 EKAIAANPTY-AE-AYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 464 (944)
Q Consensus 415 ~~al~~~p~~-~~-a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~ 464 (944)
+-|++...-+ ++ .|-.....-...|.+++|...|++.|+..+... ++..
T Consensus 495 elAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWis 545 (677)
T KOG1915|consen 495 ELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWIS 545 (677)
T ss_pred HHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHh
Confidence 9998875433 22 334445556778999999999999999998766 5544
No 88
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.65 E-value=3.6e-13 Score=150.49 Aligned_cols=208 Identities=16% Similarity=0.088 Sum_probs=170.4
Q ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHH
Q 002273 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT 120 (944)
Q Consensus 44 ~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 120 (944)
+|..+..++.+|..+...|+.++|...+.++.+..|.+ .+..+..+.++...|++++|.+.++++++.+|++..++.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 45577889999999999999999999999998887754 567888899999999999999999999999999987776
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH-cCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 002273 121 HCGILYKDEGRLVEAAESYHKALS-ADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGV 199 (944)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 199 (944)
. +..+...|++..+.....+++. ..+.++.. ...+..+|.++...|++++|+..++++++.+|++..++..+|.
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~ 156 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDHVARVLPLWAPENPDY----WYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAH 156 (355)
T ss_pred H-hHHHHHhcccccCchhHHHHHhccCcCCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 5 5555555554444444444443 22222222 2235677888999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 002273 200 VYSELMQYDTALGCYEKAALERPMYA----EAYCNMGVIYKNRGDLESAIACYERCLAVSP 256 (944)
Q Consensus 200 ~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 256 (944)
++...|++++|+.++++++...|..+ ..+..++.++...|++++|+..|++++...|
T Consensus 157 i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 157 VLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 99999999999999999999876432 3466899999999999999999999976665
No 89
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.63 E-value=4.9e-13 Score=134.99 Aligned_cols=377 Identities=15% Similarity=0.096 Sum_probs=266.0
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------------CC-
Q 002273 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL--------------DP- 113 (944)
Q Consensus 49 ~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------------~p- 113 (944)
+..+..|.+++..|+|++|+..|+-+...+.-+.+.+..++.|++-.|.|.+|.....++-+. +.
T Consensus 58 ~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndE 137 (557)
T KOG3785|consen 58 SLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDE 137 (557)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcH
Confidence 455678999999999999999999999887778999999999999999999998877665321 10
Q ss_pred -----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 002273 114 -----------QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182 (944)
Q Consensus 114 -----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~ 182 (944)
+..+-...++.+.+..-.|++|++.|.+.+.-+|+.... -..++.+|++..-++-+.+.+.-
T Consensus 138 k~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~al-------NVy~ALCyyKlDYydvsqevl~v 210 (557)
T KOG3785|consen 138 KRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIAL-------NVYMALCYYKLDYYDVSQEVLKV 210 (557)
T ss_pred HHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhh-------HHHHHHHHHhcchhhhHHHHHHH
Confidence 112234556666666777888888888888877765432 34566677777888888888888
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----------------------------HHhCC----CCHHHHHH
Q 002273 183 ALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA----------------------------ALERP----MYAEAYCN 230 (944)
Q Consensus 183 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a----------------------------l~~~p----~~~~~~~~ 230 (944)
.++..|++..+...++...++.=+-..|....+.. ++.-| --+++..+
T Consensus 211 YL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlN 290 (557)
T KOG3785|consen 211 YLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLN 290 (557)
T ss_pred HHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhh
Confidence 88888888877777776666543222222222211 11112 13567788
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHH
Q 002273 231 MGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVA 310 (944)
Q Consensus 231 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~ 310 (944)
+...|.++++.++|+...+. .+|..+.-+...+.+...+|+. ........-|..
T Consensus 291 L~iYyL~q~dVqeA~~L~Kd---l~PttP~EyilKgvv~aalGQe-----------------------~gSreHlKiAqq 344 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKD---LDPTTPYEYILKGVVFAALGQE-----------------------TGSREHLKIAQQ 344 (557)
T ss_pred heeeecccccHHHHHHHHhh---cCCCChHHHHHHHHHHHHhhhh-----------------------cCcHHHHHHHHH
Confidence 88888888888888876554 6788887777777777777754 111112233333
Q ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-
Q 002273 311 YYKKALYY--NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK- 387 (944)
Q Consensus 311 ~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~- 387 (944)
.++-.-.. .-+.......++.+++-..++++.+.+++..-....++....++++..+...|++.+|.+.|-+.-..+
T Consensus 345 ffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~i 424 (557)
T KOG3785|consen 345 FFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEI 424 (557)
T ss_pred HHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhh
Confidence 33322111 111223456677778888899999999988888888888889999999999999999999998775544
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChh
Q 002273 388 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY-AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 460 (944)
Q Consensus 388 p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~-~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~ 460 (944)
.+.......+|+||...++++-|-..+-+. ..|.. ...+..++....+.+++--|.+.|...-.++|+-.+
T Consensus 425 kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~--~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEn 496 (557)
T KOG3785|consen 425 KNKILYKSMLARCYIRNKKPQLAWDMMLKT--NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPEN 496 (557)
T ss_pred hhhHHHHHHHHHHHHhcCCchHHHHHHHhc--CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCccc
Confidence 334456677999999999999998877543 12222 334556788888899988899999988888887543
No 90
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=9e-12 Score=134.68 Aligned_cols=398 Identities=14% Similarity=0.046 Sum_probs=263.3
Q ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 002273 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (944)
Q Consensus 45 ~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (944)
|.+..++...-..+.+.++|++|+.+.++-......+ ...+..+.|.+++++.++|+..++ -.++.+..++...|.
T Consensus 43 pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~-~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQ 118 (652)
T KOG2376|consen 43 PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVIN-SFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQ 118 (652)
T ss_pred CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcc-hhhHHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHH
Confidence 5577888888999999999999995544432221112 223799999999999999999998 456666778899999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCChhHHhHH------------------------HHHHHHHHHHHHHcCChHHHHHHH
Q 002273 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECL------------------------AIVLTDLGTSLKLAGNTQDGIQKY 180 (944)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l------------------------a~~~~~lg~~~~~~g~~~~A~~~~ 180 (944)
+++++|+|++|...|+...+.+.++.+..... -..+++.+.++...|+|.+|++.+
T Consensus 119 vlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL 198 (652)
T KOG2376|consen 119 VLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELL 198 (652)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHH
Confidence 99999999999999999987665543321110 124678888999999999999999
Q ss_pred HHHHhh--------CCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH----HHHHHHHHcCCH
Q 002273 181 YEALKI--------DPH-------YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC----NMGVIYKNRGDL 241 (944)
Q Consensus 181 ~~al~~--------~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~----~la~~~~~~g~~ 241 (944)
++++++ +.+ -..+...++.++..+|+.++|...|...++.+|.+..... ++-.+-....-+
T Consensus 199 ~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~ 278 (652)
T KOG2376|consen 199 EKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYF 278 (652)
T ss_pred HHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccC
Confidence 999544 111 1345678899999999999999999999998876653222 221111111111
Q ss_pred H-HHHHHHHHHHHhCCC----------cHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhH-----HHh-hhcCC
Q 002273 242 E-SAIACYERCLAVSPN----------FEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFF-----ELV-KLEGD 304 (944)
Q Consensus 242 ~-~A~~~~~~al~~~p~----------~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~l~-~~~~~ 304 (944)
+ .++..++......++ -...+.+.+.+....+..... ..........+...++ +.. .....
T Consensus 279 d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~--r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~ 356 (652)
T KOG2376|consen 279 DGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQV--RELSASLPGMSPESLFPILLQEATKVREKK 356 (652)
T ss_pred chHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH--HHHHHhCCccCchHHHHHHHHHHHHHHHHH
Confidence 1 111122111111111 111222333332222222111 1111222222222222 112 22235
Q ss_pred HHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhh-------CCCCHHHHHHHHHHHHHCCCHHHH
Q 002273 305 INQGVAYYKKALYYNWHY-ADAMYNLGVAYGEMLKFDMAIVFYELAFHF-------NPHCAEACNNLGVIYKDRDNLDKA 376 (944)
Q Consensus 305 ~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A 376 (944)
+.++.+++....+.+|.. ..+...++.+.+.+|+++.|++.+...+.. ....+.+-..+-.+++..++.+.|
T Consensus 357 ~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a 436 (652)
T KOG2376|consen 357 HKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSA 436 (652)
T ss_pred HhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccH
Confidence 788999999999889887 678889999999999999999999944321 112244555555666777766666
Q ss_pred HHHHHHHHhh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002273 377 VECYQMALSI-------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYE 449 (944)
Q Consensus 377 ~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~ 449 (944)
...+.+++.. .+..-..+...+.+-.+.|+-++|...+++.++.+|++.+++..+...|... +.+.|..+-+
T Consensus 437 ~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k 515 (652)
T KOG2376|consen 437 SAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSK 515 (652)
T ss_pred HHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence 6666666654 2333345666778888889999999999999999999999999998888766 5666665443
No 91
>PLN02949 transferase, transferring glycosyl groups
Probab=99.59 E-value=5.7e-13 Score=151.14 Aligned_cols=176 Identities=15% Similarity=0.120 Sum_probs=140.6
Q ss_pred eEEEecCC--CCcCCHHHHHHHHHHHhH----cCCceEEEecCCCC--CHHHHHHHHHHHHHcCCCCCcEEEccCccCcH
Q 002273 683 ITFGSFNN--LAKITPKVLQVWARILCA----VPNSRLVVKCKPFC--CDSVRHRFLSTLEQLGLESLRVDLLPLILLNH 754 (944)
Q Consensus 683 ~~f~~~~~--~~K~~~~~~~~~~~il~~----~p~~~l~~~~~~~~--~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~ 754 (944)
.+|.++++ +.|.++..+++|+++++. .|+.+|+|+|++.. +....+.+++.++++|+ .++|.|.|.++ .+
T Consensus 269 ~~il~vGR~~~~Kg~~llI~A~~~l~~~~~~~~~~~~LvIvG~~~~~~~~~~~~eL~~la~~l~L-~~~V~f~g~v~-~~ 346 (463)
T PLN02949 269 PYIISVAQFRPEKAHALQLEAFALALEKLDADVPRPKLQFVGSCRNKEDEERLQKLKDRAKELGL-DGDVEFHKNVS-YR 346 (463)
T ss_pred CEEEEEEeeeccCCHHHHHHHHHHHHHhccccCCCcEEEEEeCCCCcccHHHHHHHHHHHHHcCC-CCcEEEeCCCC-HH
Confidence 34666664 589999999999998764 47899999987532 23445778889999999 68999999987 68
Q ss_pred HHHHhcccccEEecCC-CCCCcccHHHhhhcCCcEEecCCCcccccchhHH---Hhh--cCCcccccCCHHHHHHHHHHH
Q 002273 755 DHMQAYSLMDISLDTF-PYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSL---LTK--VGLKHLIAKNEDEYVQLALQL 828 (944)
Q Consensus 755 ~~~~~~~~~Di~Ld~~-~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~---l~~--~gl~~~v~~~~~~y~~~a~~l 828 (944)
+....|+.+|+++-|. ..+.|.+.+|||++|+|||+ ++.|+-. ... -|...+.+.|++++.+...++
T Consensus 347 el~~ll~~a~~~v~~s~~E~FGivvlEAMA~G~PVIa-------~~~gGp~~eIV~~~~~g~tG~l~~~~~~la~ai~~l 419 (463)
T PLN02949 347 DLVRLLGGAVAGLHSMIDEHFGISVVEYMAAGAVPIA-------HNSAGPKMDIVLDEDGQQTGFLATTVEEYADAILEV 419 (463)
T ss_pred HHHHHHHhCcEEEeCCccCCCChHHHHHHHcCCcEEE-------eCCCCCcceeeecCCCCcccccCCCHHHHHHHHHHH
Confidence 8889999999999876 45889999999999999998 4444211 111 144567778999999999999
Q ss_pred hc-CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 002273 829 AS-DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 870 (944)
Q Consensus 829 ~~-d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 870 (944)
.+ |++.+.+|++..|++.. .|+++.|+++++++|+.+..
T Consensus 420 l~~~~~~r~~m~~~ar~~~~---~FS~e~~~~~~~~~i~~l~~ 459 (463)
T PLN02949 420 LRMRETERLEIAAAARKRAN---RFSEQRFNEDFKDAIRPILN 459 (463)
T ss_pred HhCCHHHHHHHHHHHHHHHH---HcCHHHHHHHHHHHHHHHHh
Confidence 98 57888899999998862 39999999999999998764
No 92
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.58 E-value=3.3e-13 Score=141.06 Aligned_cols=190 Identities=14% Similarity=0.116 Sum_probs=157.0
Q ss_pred CCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHH--
Q 002273 43 LKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNV---EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNAC-- 117 (944)
Q Consensus 43 ~~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-- 117 (944)
.++..++.++.+|..++..|++++|+..|++++..+|.++ .+++.+|.++...|++++|+..|+++++.+|+++.
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 107 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD 107 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH
Confidence 3456889999999999999999999999999999999875 68899999999999999999999999999998776
Q ss_pred -HHHHHHHHHHHc--------CCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 002273 118 -AHTHCGILYKDE--------GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP 188 (944)
Q Consensus 118 -~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 188 (944)
+++.+|.++... |++++|++.|++++..+|++......+ ..++.... .
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~----~~~~~~~~-------~------------ 164 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAK----KRMDYLRN-------R------------ 164 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHH----HHHHHHHH-------H------------
Confidence 789999999886 889999999999999999986653221 11111110 0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 002273 189 HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM---YAEAYCNMGVIYKNRGDLESAIACYERCLAVSP 256 (944)
Q Consensus 189 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 256 (944)
.......+|.+|...|++.+|+..++++++..|+ .+++++.+|.++...|++++|..+++.+....|
T Consensus 165 -~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 165 -LAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred -HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 0123457888899999999999999999988665 457889999999999999999998888776655
No 93
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.56 E-value=4.9e-11 Score=134.99 Aligned_cols=276 Identities=16% Similarity=0.066 Sum_probs=205.0
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (944)
..+.++..+.++...|++++|++.+++....-.+....+-.+|.++.++|++++|...|...++.+|++...+..+..+.
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 35678889999999999999999999988888888999999999999999999999999999999999999999988887
Q ss_pred HHcC-----CHHHHHHHHHHHHHcCCCChhH------------HhHHHHH-------------HHHHHHHHHHcCChHHH
Q 002273 127 KDEG-----RLVEAAESYHKALSADPSYKPA------------AECLAIV-------------LTDLGTSLKLAGNTQDG 176 (944)
Q Consensus 127 ~~~g-----~~~~A~~~~~~al~~~p~~~~~------------~~~la~~-------------~~~lg~~~~~~g~~~~A 176 (944)
.... +.+.-...|++.....|..... ....+.. +.++-..|....+..-.
T Consensus 83 g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 83 GLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAII 162 (517)
T ss_pred hhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHH
Confidence 3332 5677788888887777763222 1111111 11222222222222222
Q ss_pred HHHHHHHHhh---C------------CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 002273 177 IQKYYEALKI---D------------PHY--APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239 (944)
Q Consensus 177 ~~~~~~al~~---~------------p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 239 (944)
..++...... . |.. ..+++.++..|...|++++|+++++++|+..|..++.+...|.++...|
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G 242 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCC
Confidence 2222222211 0 111 2466889999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhC
Q 002273 240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYN 319 (944)
Q Consensus 240 ~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~ 319 (944)
++.+|.+.++.+-.++..+-......+..+.+. |++++|.+.+......+
T Consensus 243 ~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa------------------------------~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 243 DLKEAAEAMDEARELDLADRYINSKCAKYLLRA------------------------------GRIEEAEKTASLFTRED 292 (517)
T ss_pred CHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHC------------------------------CCHHHHHHHHHhhcCCC
Confidence 999999999999999998877766666665554 45577776666554433
Q ss_pred CC--C-------HHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 002273 320 WH--Y-------ADAMYNLGVAYGEMLKFDMAIVFYELAFHF 352 (944)
Q Consensus 320 p~--~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 352 (944)
.+ . .......|.+|.+.|++..|++.|..+.+.
T Consensus 293 ~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~ 334 (517)
T PF12569_consen 293 VDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH 334 (517)
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 11 0 223455688888888888888888877765
No 94
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.54 E-value=1.3e-12 Score=147.11 Aligned_cols=166 Identities=17% Similarity=0.193 Sum_probs=136.2
Q ss_pred CCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcC----CceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccC
Q 002273 679 TNGFITFGSFNNL--AKITPKVLQVWARILCAVP----NSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILL 752 (944)
Q Consensus 679 ~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p----~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~ 752 (944)
.++.++++++.+. .|..+.+++++.++++..| +.+|+++|.+ ..++.+++.+++.|+ .++|.|.|.
T Consensus 191 ~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~~~~l~i~G~g----~~~~~~~~~~~~~~~-~~~v~~~g~--- 262 (374)
T TIGR03088 191 ADESVVVGTVGRLQAVKDQPTLVRAFALLVRQLPEGAERLRLVIVGDG----PARGACEQMVRAAGL-AHLVWLPGE--- 262 (374)
T ss_pred CCCCeEEEEEecCCcccCHHHHHHHHHHHHHhCcccccceEEEEecCC----chHHHHHHHHHHcCC-cceEEEcCC---
Confidence 4556677777755 7899999999999998877 6799998865 355778888899999 588999886
Q ss_pred cHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCccc--------c--cCCHHHH
Q 002273 753 NHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHL--------I--AKNEDEY 821 (944)
Q Consensus 753 ~~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~--------v--~~~~~~y 821 (944)
..+....|..+|+++-|.-+ +.|.+.+|||+||+|||+ +++| |++|+ + ..|.+++
T Consensus 263 ~~~~~~~~~~adi~v~pS~~Eg~~~~~lEAma~G~Pvv~-------s~~~-------g~~e~i~~~~~g~~~~~~d~~~l 328 (374)
T TIGR03088 263 RDDVPALMQALDLFVLPSLAEGISNTILEAMASGLPVIA-------TAVG-------GNPELVQHGVTGALVPPGDAVAL 328 (374)
T ss_pred cCCHHHHHHhcCEEEeccccccCchHHHHHHHcCCCEEE-------cCCC-------CcHHHhcCCCceEEeCCCCHHHH
Confidence 35677888999999877644 779999999999999998 6665 44433 3 3589999
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 002273 822 VQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNM 868 (944)
Q Consensus 822 ~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 868 (944)
++....+.+|++.+..+++..|+.+.+ .|+++.+++.+++.|+++
T Consensus 329 a~~i~~l~~~~~~~~~~~~~a~~~~~~--~fs~~~~~~~~~~~y~~~ 373 (374)
T TIGR03088 329 ARALQPYVSDPAARRAHGAAGRARAEQ--QFSINAMVAAYAGLYDQL 373 (374)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHh
Confidence 999999999999999999998887754 499999999999999864
No 95
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.54 E-value=2.2e-12 Score=151.63 Aligned_cols=290 Identities=13% Similarity=0.089 Sum_probs=220.3
Q ss_pred HhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhH
Q 002273 76 EKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAEC 155 (944)
Q Consensus 76 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 155 (944)
..+|.+..++..++..+...+++++|+..++.+++..|+....++.+|.++.+.+++.++... .++...+.+
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~------ 96 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQN------ 96 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccc------
Confidence 346888999999999999999999999999999999999999999999999999997777666 555554443
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002273 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY 235 (944)
Q Consensus 156 la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 235 (944)
.++ .+++++...+...+++..+++.+|.+|-++|++++|...|+++++.+|+++.++.++|..|
T Consensus 97 ---------------~~~-~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ 160 (906)
T PRK14720 97 ---------------LKW-AIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSY 160 (906)
T ss_pred ---------------cch-hHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 233 5556666666667788889999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHH
Q 002273 236 KNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKA 315 (944)
Q Consensus 236 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~a 315 (944)
... +.++|++++.+++.. +...+++.++.+++.+.
T Consensus 161 ae~-dL~KA~~m~~KAV~~--------------------------------------------~i~~kq~~~~~e~W~k~ 195 (906)
T PRK14720 161 EEE-DKEKAITYLKKAIYR--------------------------------------------FIKKKQYVGIEEIWSKL 195 (906)
T ss_pred HHh-hHHHHHHHHHHHHHH--------------------------------------------HHhhhcchHHHHHHHHH
Confidence 999 999999999998875 22244668888889999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHH
Q 002273 316 LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLN 395 (944)
Q Consensus 316 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 395 (944)
+..+|.+.+.+..+-......-.+..+ ...+.-+-..|...++|++++.+++.+++.+|.+..+..
T Consensus 196 ~~~~~~d~d~f~~i~~ki~~~~~~~~~--------------~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~ 261 (906)
T PRK14720 196 VHYNSDDFDFFLRIERKVLGHREFTRL--------------VGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKARE 261 (906)
T ss_pred HhcCcccchHHHHHHHHHHhhhccchh--------------HHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHH
Confidence 998888777654443322222112222 344555566777888899999999999999999988888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhh
Q 002273 396 NLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 462 (944)
Q Consensus 396 ~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~ 462 (944)
.++.+|. +.|.. ...++..+++. .+-.....+..|+..|++.+..++.+--.+
T Consensus 262 ~l~~~y~--~kY~~-~~~~ee~l~~s-----------~l~~~~~~~~~~i~~fek~i~f~~G~yv~H 314 (906)
T PRK14720 262 ELIRFYK--EKYKD-HSLLEDYLKMS-----------DIGNNRKPVKDCIADFEKNIVFDTGNFVYH 314 (906)
T ss_pred HHHHHHH--HHccC-cchHHHHHHHh-----------ccccCCccHHHHHHHHHHHeeecCCCEEEE
Confidence 8888887 44433 44455444432 111112456788888999888888765443
No 96
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.53 E-value=1.2e-10 Score=121.17 Aligned_cols=298 Identities=13% Similarity=0.061 Sum_probs=198.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHH
Q 002273 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH-YAPAYYNLGVVY 201 (944)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~ 201 (944)
|..-+..|+|.+|.....+.-+..+...- .+..-+....+.|+++.+-.++.++-+..++ ...+....+.+.
T Consensus 91 gl~~l~eG~~~qAEkl~~rnae~~e~p~l-------~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarll 163 (400)
T COG3071 91 GLLKLFEGDFQQAEKLLRRNAEHGEQPVL-------AYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLL 163 (400)
T ss_pred HHHHHhcCcHHHHHHHHHHhhhcCcchHH-------HHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 44444556666666666665444433222 2333445555666666666666666665322 344555666667
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH-HHHHHHhhhhhhhhH
Q 002273 202 SELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM-AIALTDLGTKTYGRA 280 (944)
Q Consensus 202 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-a~~l~~~~~~~~~~a 280 (944)
...|+++.|..-..++++..|.++.++.....+|...|++.+....+.+.-+..--+..-...+ -.++..+=+.
T Consensus 164 l~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q----- 238 (400)
T COG3071 164 LNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQ----- 238 (400)
T ss_pred HhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHH-----
Confidence 7777777777777777777777777777777777777777776666666554432221111111 0000000000
Q ss_pred HHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHH
Q 002273 281 LLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC 360 (944)
Q Consensus 281 ~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 360 (944)
....+..+.-..+++..-..-..++.+...++.-+...|+.++|.+..+.+++..-+.. ..
T Consensus 239 ------------------~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~ 299 (400)
T COG3071 239 ------------------ARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LC 299 (400)
T ss_pred ------------------HhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HH
Confidence 00011112222344444444445688888999999999999999999999998764432 22
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 002273 361 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS 440 (944)
Q Consensus 361 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~ 440 (944)
..++ ...-++.+.=++..++.++..|+++..+..||.++.+.+.|.+|.++|+.+++..|+ ...+..+|.++.+.|+
T Consensus 300 ~~~~--~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~ 376 (400)
T COG3071 300 RLIP--RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGE 376 (400)
T ss_pred HHHh--hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCC
Confidence 2222 235678899999999999999999999999999999999999999999999999887 7889999999999999
Q ss_pred HHHHHHHHHHHHhh
Q 002273 441 ISLAIDAYEQCLKI 454 (944)
Q Consensus 441 ~~eA~~~~~~al~l 454 (944)
.++|.+.+++++..
T Consensus 377 ~~~A~~~r~e~L~~ 390 (400)
T COG3071 377 PEEAEQVRREALLL 390 (400)
T ss_pred hHHHHHHHHHHHHH
Confidence 99999999998854
No 97
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.53 E-value=1.2e-12 Score=136.77 Aligned_cols=183 Identities=16% Similarity=0.089 Sum_probs=148.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHh
Q 002273 78 DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA---CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAE 154 (944)
Q Consensus 78 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 154 (944)
++..+..++.+|..+...|++++|+..|+++++.+|+++ .+++.+|.++...|++++|+..|+++++..|++...
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~-- 106 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA-- 106 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch--
Confidence 445789999999999999999999999999999999876 578999999999999999999999999999988764
Q ss_pred HHHHHHHHHHHHHHHc--------CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 002273 155 CLAIVLTDLGTSLKLA--------GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE 226 (944)
Q Consensus 155 ~la~~~~~lg~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 226 (944)
..+++.+|.++... |++++|++.|+++++.+|++...+..+..+.... .. ...
T Consensus 107 --~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~----~~-------------~~~ 167 (235)
T TIGR03302 107 --DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLR----NR-------------LAG 167 (235)
T ss_pred --HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHH----HH-------------HHH
Confidence 22456667777665 7899999999999999999866654333221111 10 012
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhhhhhhhhHH
Q 002273 227 AYCNMGVIYKNRGDLESAIACYERCLAVSPNF---EIAKNNMAIALTDLGTKTYGRAL 281 (944)
Q Consensus 227 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~l~~~~~~~~~~a~ 281 (944)
....+|.++...|++.+|+..++++++..|+. ..++..++.++..+|+...+...
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~ 225 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDA 225 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34578899999999999999999999997764 57899999999999987655543
No 98
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=99.53 E-value=9.4e-13 Score=149.26 Aligned_cols=262 Identities=18% Similarity=0.173 Sum_probs=176.1
Q ss_pred HHHHHHhHhCCccEEEecCCCCCCCchhhhccC--CcceeeecccC---CCCC----------CCCCccEEEecCC--CC
Q 002273 579 KKVAAMVREDKIDILVELTGHTANNKLGMMACQ--PAPVQVTWIGY---PNTT----------GLPTIDYRITDSL--AD 641 (944)
Q Consensus 579 ~~~a~~i~~d~idilvdl~g~t~~~~~~~~a~r--~ApvQ~~~~G~---p~t~----------g~~~~Dy~i~d~~--~~ 641 (944)
..+.+.|...++||+.--+.++...-..+++.| ..|+=.+.-|. +... .....|.+|+-.. .+
T Consensus 78 ~~l~~~~~~~~~DiIh~~~~~~~~~~~~~~~~~~~~~~~v~t~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~ 157 (398)
T cd03796 78 PLLRNILIRERITIVHGHQAFSALAHEALLHARTMGLKTVFTDHSLFGFADASSIHTNKLLRFSLADVDHVICVSHTSKE 157 (398)
T ss_pred HHHHHHHHhcCCCEEEECCCCchHHHHHHHHhhhcCCcEEEEecccccccchhhHHhhHHHHHhhccCCEEEEecHhHhh
Confidence 456677778899999543332221111233333 34554443331 1111 1234566554211 11
Q ss_pred Ccc-cccccccceEEcCCCccc--cCCCCCCCCCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCceEEE
Q 002273 642 PPE-TKQKHVEELIRLPECFLC--YTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVV 716 (944)
Q Consensus 642 p~~-~~~~~~e~~~~lp~~~~~--~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~ 716 (944)
-.- ....-.+++..+|+..-. |.|.... ..++.++++++++. .|....+++++..+.+..|+.+|++
T Consensus 158 ~~~~~~~~~~~k~~vi~ngvd~~~f~~~~~~--------~~~~~~~i~~~grl~~~Kg~~~li~a~~~l~~~~~~~~l~i 229 (398)
T cd03796 158 NTVLRASLDPERVSVIPNAVDSSDFTPDPSK--------RDNDKITIVVISRLVYRKGIDLLVGIIPEICKKHPNVRFII 229 (398)
T ss_pred HHHHHhCCChhhEEEEcCccCHHHcCCCccc--------CCCCceEEEEEeccchhcCHHHHHHHHHHHHhhCCCEEEEE
Confidence 000 011124567788864210 2221110 23455678777765 8889999999999988999999999
Q ss_pred ecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCc
Q 002273 717 KCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSV 795 (944)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~ 795 (944)
+|.+ .....+++.+++.|++ ++|.|.|.++ ..+....|..+|+++-|..+ +.|.+.+|||+||+|||+
T Consensus 230 ~G~g----~~~~~l~~~~~~~~l~-~~v~~~G~~~-~~~~~~~l~~ad~~v~pS~~E~~g~~~~EAma~G~PVI~----- 298 (398)
T cd03796 230 GGDG----PKRILLEEMREKYNLQ-DRVELLGAVP-HERVRDVLVQGHIFLNTSLTEAFCIAIVEAASCGLLVVS----- 298 (398)
T ss_pred EeCC----chHHHHHHHHHHhCCC-CeEEEeCCCC-HHHHHHHHHhCCEEEeCChhhccCHHHHHHHHcCCCEEE-----
Confidence 9875 3567788888999994 8999999987 68999999999999877755 778999999999999998
Q ss_pred ccccchhHHHhhcCCcc--------cccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 002273 796 HAHNVGVSLLTKVGLKH--------LIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 867 (944)
Q Consensus 796 ~~~r~~~~~l~~~gl~~--------~v~~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 867 (944)
+.+| |++| ++..|.+++++...++.++......+++..++++.. .|+++..++.+.+.|+.
T Consensus 299 --s~~g-------g~~e~i~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~--~fs~~~~~~~~~~~y~~ 367 (398)
T cd03796 299 --TRVG-------GIPEVLPPDMILLAEPDVESIVRKLEEAISILRTGKHDPWSFHNRVKK--MYSWEDVAKRTEKVYDR 367 (398)
T ss_pred --CCCC-------CchhheeCCceeecCCCHHHHHHHHHHHHhChhhhhhHHHHHHHHHHh--hCCHHHHHHHHHHHHHH
Confidence 5444 3333 345588999999999999877666677777776653 49999999999999998
Q ss_pred HHH
Q 002273 868 MWH 870 (944)
Q Consensus 868 ~~~ 870 (944)
+..
T Consensus 368 l~~ 370 (398)
T cd03796 368 ILQ 370 (398)
T ss_pred Hhc
Confidence 653
No 99
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.52 E-value=2e-13 Score=129.53 Aligned_cols=122 Identities=15% Similarity=0.160 Sum_probs=79.2
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002273 344 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 423 (944)
Q Consensus 344 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 423 (944)
.+++++++++|++ +..+|.++...|++++|+.+|++++..+|.+..++..+|.++...|++++|+..|+++++++|+
T Consensus 14 ~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~ 90 (144)
T PRK15359 14 DILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS 90 (144)
T ss_pred HHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 4556666666553 4455666666666666666666666666666666666666666666666666666666666666
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhhHHHH
Q 002273 424 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 468 (944)
Q Consensus 424 ~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~~~~ 468 (944)
++.+++++|.++...|++++|+..|++++++.|+++..+.++..+
T Consensus 91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~ 135 (144)
T PRK15359 91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNA 135 (144)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 666666666666666666666666666666666666666554443
No 100
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.52 E-value=2.1e-13 Score=140.11 Aligned_cols=286 Identities=21% Similarity=0.220 Sum_probs=202.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhh------CCCCHHHHHH
Q 002273 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI------DPHYAPAYYN 196 (944)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~ 196 (944)
|.-+++.|++...+..|+.+++...++. ..+..+|..+|+.|...++|++|+++-..-+.+ .-..+.+.-+
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl---~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgN 100 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDL---STLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGN 100 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHH---HHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccc
Confidence 5667888888989999999988876653 346677888999999999999998876543322 2234556678
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 002273 197 LGVVYSELMQYDTALGCYEKAALERP------MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 270 (944)
Q Consensus 197 la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~ 270 (944)
||.++.-.|.|++|+.+..+-+.+.. ....+++++|.+|...|+.-.-..-- +....+.++.
T Consensus 101 LGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pe----e~g~f~~ev~-------- 168 (639)
T KOG1130|consen 101 LGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPE----EKGAFNAEVT-------- 168 (639)
T ss_pred ccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChh----hcccccHHHH--------
Confidence 89999999999999998888766432 23568888999988877532110000 0000000000
Q ss_pred HhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCChHHHHH
Q 002273 271 DLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWH------YADAMYNLGVAYGEMLKFDMAIV 344 (944)
Q Consensus 271 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~ 344 (944)
..++.|.++|..-+++... ...++-++|..|+-+|+|++|+.
T Consensus 169 --------------------------------~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~ 216 (639)
T KOG1130|consen 169 --------------------------------SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIH 216 (639)
T ss_pred --------------------------------HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHH
Confidence 1124444444444443222 13467788888888899999988
Q ss_pred HHHHHHhhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC----C--CCHHHHHHHHHHHHHcCCHHHHHH
Q 002273 345 FYELAFHFNPHC------AEACNNLGVIYKDRDNLDKAVECYQMALSIK----P--NFSQSLNNLGVVYTVQGKMDAAAE 412 (944)
Q Consensus 345 ~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----p--~~~~~~~~la~~~~~~g~~~~A~~ 412 (944)
.-+.-+.+..+. -.++.++|.++.-.|+++.|+++|++.+.+. . ..+...+.||..|.-..++++|+.
T Consensus 217 ~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~ 296 (639)
T KOG1130|consen 217 FHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAIT 296 (639)
T ss_pred HHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 887777664322 4578889999999999999999998877552 1 235578889999999999999999
Q ss_pred HHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 002273 413 MIEKAIAANP------TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 455 (944)
Q Consensus 413 ~l~~al~~~p------~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~ 455 (944)
++++-+.+.. ....+++.||..+..+|..++|+.+.++.+++.
T Consensus 297 Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s 345 (639)
T KOG1130|consen 297 YHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSS 345 (639)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 9998877632 236788999999999999999999888877653
No 101
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.52 E-value=1.2e-10 Score=121.15 Aligned_cols=295 Identities=14% Similarity=0.033 Sum_probs=210.3
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHH
Q 002273 86 IGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGT 165 (944)
Q Consensus 86 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~ 165 (944)
..-|..-+..|+|.+|.+...+.-+..+....++..-+...-+.|+++.|-.++.++-+..+++.-. +....+.
T Consensus 88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~------v~ltrar 161 (400)
T COG3071 88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLA------VELTRAR 161 (400)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHH------HHHHHHH
Confidence 3445556677899999998888877777666777777788888899999999999988885554433 3566677
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH---HHHHHH--HHHcCC
Q 002273 166 SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAY---CNMGVI--YKNRGD 240 (944)
Q Consensus 166 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~---~~la~~--~~~~g~ 240 (944)
.+...|++..|.....++++..|.++.+......+|...|++.+...++.+.-+..--+.+-+ -+.+.. +.+..+
T Consensus 162 lll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~ 241 (400)
T COG3071 162 LLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARD 241 (400)
T ss_pred HHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhc
Confidence 778889999999999999999999999999999999999999998888888776543222111 111111 111111
Q ss_pred HHHH---HHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHH
Q 002273 241 LESA---IACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALY 317 (944)
Q Consensus 241 ~~~A---~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~ 317 (944)
-+.+ ..+++..-..-.+++.....++.- +...|+.++|.+..+++++
T Consensus 242 ~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~------------------------------li~l~~~~~A~~~i~~~Lk 291 (400)
T COG3071 242 DNGSEGLKTWWKNQPRKLRNDPELVVAYAER------------------------------LIRLGDHDEAQEIIEDALK 291 (400)
T ss_pred cccchHHHHHHHhccHHhhcChhHHHHHHHH------------------------------HHHcCChHHHHHHHHHHHH
Confidence 1111 112222222222233333333333 4455666999999998888
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 002273 318 YNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 397 (944)
Q Consensus 318 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 397 (944)
..-+.. .... .-...-++...=++..++.++..|+++..+..||.++.+.+.|.+|..+|+.+++..|+ ...+..+
T Consensus 292 ~~~D~~-L~~~--~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~l 367 (400)
T COG3071 292 RQWDPR-LCRL--IPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAEL 367 (400)
T ss_pred hccChh-HHHH--HhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHH
Confidence 765533 1111 22345678888888899999999999999999999999999999999999999988776 6678889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Q 002273 398 GVVYTVQGKMDAAAEMIEKAIAA 420 (944)
Q Consensus 398 a~~~~~~g~~~~A~~~l~~al~~ 420 (944)
|.++.++|+..+|.+..++++..
T Consensus 368 a~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 368 ADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHcCChHHHHHHHHHHHHH
Confidence 99999999999999999988754
No 102
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.52 E-value=1e-12 Score=151.86 Aligned_cols=342 Identities=13% Similarity=0.081 Sum_probs=198.4
Q ss_pred CCCcEEEeecC-CCccCc--HHHHHHhhhhhccCCcEEEEEEeccccCChhhHHHHH-HHhhh-CCceEec---cCCCHH
Q 002273 508 ERPLVIGYVSP-DYFTHS--VSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFRE-KVMKK-GGIWRDI---YGIDEK 579 (944)
Q Consensus 508 ~~~lriGy~S~-d~~~h~--v~~~~~~~l~~~d~~~fev~~y~~~~~~d~~t~~~~~-~~~~~-~~~~~~~---~~~~~~ 579 (944)
.++.||..+.. .+..|. +...+..+.+.+.....||++.+...........++- .+... ...+..+ .... .
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~-~ 134 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDEGVPQEFHGAKVIGSWSFPCPFYQKVPLSLALS-P 134 (465)
T ss_pred CCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCCCCCccccCceeeccCCcCCccCCCceeeccCC-H
Confidence 67889998753 333333 2345555666666677888888764322110000000 00000 0000000 0111 3
Q ss_pred HHHHHhHhCCccEEEecCCCCCCCchhhh--ccCCcceeeecccCCCCC----C---------------CCCccEEEecC
Q 002273 580 KVAAMVREDKIDILVELTGHTANNKLGMM--ACQPAPVQVTWIGYPNTT----G---------------LPTIDYRITDS 638 (944)
Q Consensus 580 ~~a~~i~~d~idilvdl~g~t~~~~~~~~--a~r~ApvQ~~~~G~p~t~----g---------------~~~~Dy~i~d~ 638 (944)
.+.+.|+..++||+.--+.+. ..-..++ ...-.|+-+++-++.... + ....|.+++..
T Consensus 135 ~l~~~i~~~kpDiIh~~~~~~-~~~~~~~~ak~~~ip~V~~~h~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ad~ii~~S 213 (465)
T PLN02871 135 RIISEVARFKPDLIHASSPGI-MVFGALFYAKLLCVPLVMSYHTHVPVYIPRYTFSWLVKPMWDIIRFLHRAADLTLVTS 213 (465)
T ss_pred HHHHHHHhCCCCEEEECCCch-hHHHHHHHHHHhCCCEEEEEecCchhhhhcccchhhHHHHHHHHHHHHhhCCEEEECC
Confidence 678899999999985322111 1111211 223357666554432110 0 01235554421
Q ss_pred CCCCccccccc---ccceEEcCCCcc--ccCCCCCCCCCCC-CCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcC
Q 002273 639 LADPPETKQKH---VEELIRLPECFL--CYTPSPEAGPVCP-TPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVP 710 (944)
Q Consensus 639 ~~~p~~~~~~~---~e~~~~lp~~~~--~~~~~~~~~~~~~-~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p 710 (944)
-..-......+ .+++..+|+..- .|.|.......+. ......+.++++.++++ .|.. +.+.+++...|
T Consensus 214 ~~~~~~l~~~~~~~~~kv~vi~nGvd~~~f~p~~~~~~~~~~~~~~~~~~~~i~~vGrl~~~K~~----~~li~a~~~~~ 289 (465)
T PLN02871 214 PALGKELEAAGVTAANRIRVWNKGVDSESFHPRFRSEEMRARLSGGEPEKPLIVYVGRLGAEKNL----DFLKRVMERLP 289 (465)
T ss_pred HHHHHHHHHcCCCCcCeEEEeCCccCccccCCccccHHHHHHhcCCCCCCeEEEEeCCCchhhhH----HHHHHHHHhCC
Confidence 10000111222 456666675321 1222211110000 11122244566777765 5554 44455667789
Q ss_pred CceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEE
Q 002273 711 NSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCV 789 (944)
Q Consensus 711 ~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvv 789 (944)
+.+|+|+|.+ ..++.+++.++. .+|.|+|.++ .++....|..+||++-|..+ +.|.+.+|||+||+|||
T Consensus 290 ~~~l~ivG~G----~~~~~l~~~~~~-----~~V~f~G~v~-~~ev~~~~~~aDv~V~pS~~E~~g~~vlEAmA~G~PVI 359 (465)
T PLN02871 290 GARLAFVGDG----PYREELEKMFAG-----TPTVFTGMLQ-GDELSQAYASGDVFVMPSESETLGFVVLEAMASGVPVV 359 (465)
T ss_pred CcEEEEEeCC----hHHHHHHHHhcc-----CCeEEeccCC-HHHHHHHHHHCCEEEECCcccccCcHHHHHHHcCCCEE
Confidence 9999999876 455556555432 4799999987 58899999999999988755 66999999999999999
Q ss_pred ecCCCcccccchh--HHHhh--cCCcccc--cCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHH
Q 002273 790 TMAGSVHAHNVGV--SLLTK--VGLKHLI--AKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLES 863 (944)
Q Consensus 790 t~~g~~~~~r~~~--~~l~~--~gl~~~v--~~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~ 863 (944)
+ +++|. -++.. .|-..++ ..|++++.+....|.+|++.+.++++..++... -|+++..++.+++
T Consensus 360 ~-------s~~gg~~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~---~fsw~~~a~~l~~ 429 (465)
T PLN02871 360 A-------ARAGGIPDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLADPELRERMGAAAREEVE---KWDWRAATRKLRN 429 (465)
T ss_pred E-------cCCCCcHhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH---hCCHHHHHHHHHH
Confidence 8 55542 11211 1333444 358999999999999999999999999998763 3999999999998
Q ss_pred -HHHHHHHHHhcC
Q 002273 864 -TYRNMWHRYCKG 875 (944)
Q Consensus 864 -~~~~~~~~~~~~ 875 (944)
.|++++.+|...
T Consensus 430 ~~Y~~~~~~~~~~ 442 (465)
T PLN02871 430 EQYSAAIWFWRKK 442 (465)
T ss_pred HHHHHHHHHHHHH
Confidence 799988887653
No 103
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.51 E-value=4.3e-13 Score=137.93 Aligned_cols=296 Identities=23% Similarity=0.249 Sum_probs=186.4
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHH
Q 002273 89 GICLQMQNMGRLAFDSFSEAVKLDPQNA----CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLG 164 (944)
Q Consensus 89 a~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg 164 (944)
|.-+++.|++...+.+|+.+++...++. .+|..||..|+.+++|++|+++...-+.+...-.+ ...-+...-++|
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgd-klGEAKssgNLG 102 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGD-KLGEAKSSGNLG 102 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcc-hhcccccccccc
Confidence 4555666777777777777776655543 35666777777777777777665433322111000 011123345677
Q ss_pred HHHHHcCChHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHH
Q 002273 165 TSLKLAGNTQDGIQKYYEALKIDP------HYAPAYYNLGVVYSELMQY--------------------DTALGCYEKAA 218 (944)
Q Consensus 165 ~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~--------------------~~A~~~~~~al 218 (944)
+.+...|.|++|+.+..+-+.... ....+++++|.+|...|+. +.|.++|+.-+
T Consensus 103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL 182 (639)
T KOG1130|consen 103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENL 182 (639)
T ss_pred chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHH
Confidence 777778888888877777665422 2356788888888877652 23333333333
Q ss_pred HhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCC
Q 002273 219 LERPM------YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQ 292 (944)
Q Consensus 219 ~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~ 292 (944)
++... ...++-+||..|+-+|+|+.|+..-+.-+.+....
T Consensus 183 ~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~ef---------------------------------- 228 (639)
T KOG1130|consen 183 ELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEF---------------------------------- 228 (639)
T ss_pred HHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHh----------------------------------
Confidence 32111 12244455555555555555555444333221110
Q ss_pred chhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC------CCCHHHHHHHHHH
Q 002273 293 SPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN------PHCAEACNNLGVI 366 (944)
Q Consensus 293 ~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~ 366 (944)
=.++. .-.++.++|.++.-.|+++.|+++|++.+.+. ...+...+.||..
T Consensus 229 -------------------GDrAa-----eRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNt 284 (639)
T KOG1130|consen 229 -------------------GDRAA-----ERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNT 284 (639)
T ss_pred -------------------hhHHH-----HHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhH
Confidence 00000 13577889999999999999999999877652 2236778899999
Q ss_pred HHHCCCHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CC-CHHHHHHHHHH
Q 002273 367 YKDRDNLDKAVECYQMALSIKP------NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN-----PT-YAEAYNNLGVL 434 (944)
Q Consensus 367 ~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~-----p~-~~~a~~~la~~ 434 (944)
|.-..++++||.++++-+.+.. ....+++.||..+..+|..++|+.+.++.++.. +. ...+..++...
T Consensus 285 ytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl 364 (639)
T KOG1130|consen 285 YTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDL 364 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHH
Confidence 9999999999999998877643 335689999999999999999999998887752 22 24566777777
Q ss_pred HHHcCCHHH
Q 002273 435 YRDAGSISL 443 (944)
Q Consensus 435 ~~~~g~~~e 443 (944)
-..+|..+.
T Consensus 365 ~~~lG~~ds 373 (639)
T KOG1130|consen 365 ILELGQEDS 373 (639)
T ss_pred HHHhCCCcc
Confidence 777776544
No 104
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.50 E-value=4.7e-13 Score=126.96 Aligned_cols=128 Identities=16% Similarity=0.102 Sum_probs=120.4
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Q 002273 308 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 387 (944)
Q Consensus 308 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 387 (944)
-...++++++.+|++ +..+|.++...|++++|+..|++++..+|.+..++..+|.++...|++++|+..|+++++++
T Consensus 12 ~~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 12 PEDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 356788999998874 66789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 002273 388 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 438 (944)
Q Consensus 388 p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~ 438 (944)
|+++.+++++|.++...|++++|+..|+++++..|+++..+.+++.+....
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998876544
No 105
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=99.50 E-value=4.9e-13 Score=150.90 Aligned_cols=165 Identities=16% Similarity=0.119 Sum_probs=141.5
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHH
Q 002273 681 GFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 758 (944)
Q Consensus 681 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 758 (944)
+.+++++++++ .|..+.+++++..+.+..|+.+|+++|.+ +.++.+++.++++|+ .++|.|.|.++ +.+...
T Consensus 221 ~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~~l~ivG~G----~~~~~l~~~~~~~~l-~~~V~~~G~~~-~~el~~ 294 (406)
T PRK15427 221 TPLEIISVARLTEKKGLHVAIEACRQLKEQGVAFRYRILGIG----PWERRLRTLIEQYQL-EDVVEMPGFKP-SHEVKA 294 (406)
T ss_pred CCeEEEEEeCcchhcCHHHHHHHHHHHHhhCCCEEEEEEECc----hhHHHHHHHHHHcCC-CCeEEEeCCCC-HHHHHH
Confidence 44566777765 79999999999999888899999999876 567889999999999 58999999987 688999
Q ss_pred hcccccEEecCCC-------CCCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccc----------cCCHHHH
Q 002273 759 AYSLMDISLDTFP-------YAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLI----------AKNEDEY 821 (944)
Q Consensus 759 ~~~~~Di~Ld~~~-------~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v----------~~~~~~y 821 (944)
.|..+|+++-|+- .+.+++.+|||+||+|||+ +++| |++|+| ..|.+++
T Consensus 295 ~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~-------t~~~-------g~~E~v~~~~~G~lv~~~d~~~l 360 (406)
T PRK15427 295 MLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVS-------TLHS-------GIPELVEADKSGWLVPENDAQAL 360 (406)
T ss_pred HHHhCCEEEECCccCCCCCccCccHHHHHHHhCCCCEEE-------eCCC-------CchhhhcCCCceEEeCCCCHHHH
Confidence 9999999988764 4678999999999999999 6666 454433 2589999
Q ss_pred HHHHHHHhc-CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 002273 822 VQLALQLAS-DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 867 (944)
Q Consensus 822 ~~~a~~l~~-d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 867 (944)
.+...+|.+ |++.++++++..|+.+.+. |+++..++.+++.|++
T Consensus 361 a~ai~~l~~~d~~~~~~~~~~ar~~v~~~--f~~~~~~~~l~~~~~~ 405 (406)
T PRK15427 361 AQRLAAFSQLDTDELAPVVKRAREKVETD--FNQQVINRELASLLQA 405 (406)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHhh
Confidence 999999999 9999999999999988655 9999999999999976
No 106
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.50 E-value=3.7e-11 Score=136.04 Aligned_cols=298 Identities=14% Similarity=0.092 Sum_probs=221.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 002273 158 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN 237 (944)
Q Consensus 158 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 237 (944)
.++.....++...|++++|++++++....-.+....+-..|.++.++|++++|...|..+++.+|++...+..+..+...
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~ 84 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGL 84 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhh
Confidence 34566677888999999999999998888888899999999999999999999999999999999999999998888733
Q ss_pred cC-----CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHH-----hhcCCCCCchhHHHhhhcCCHHH
Q 002273 238 RG-----DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLF-----RLNGSNFQSPFFELVKLEGDINQ 307 (944)
Q Consensus 238 ~g-----~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~-----~~~~~~~~~~~~~l~~~~~~~~~ 307 (944)
.. +.+.-.+.|++.....|........- .... .|. .+...+..+ ....+.+-..+-.+|....+..-
T Consensus 85 ~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~-L~~~-~g~-~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 85 QLQLSDEDVEKLLELYDELAEKYPRSDAPRRLP-LDFL-EGD-EFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAI 161 (517)
T ss_pred hcccccccHHHHHHHHHHHHHhCccccchhHhh-cccC-CHH-HHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHH
Confidence 33 56777888888888777643322111 1000 011 111111111 11112222233344443333333
Q ss_pred HHHHHHHHHHh---------------CCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC
Q 002273 308 GVAYYKKALYY---------------NWHY--ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR 370 (944)
Q Consensus 308 A~~~~~~al~~---------------~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 370 (944)
...++...... .|.. ..+++.++..|...|++++|+++.+++++..|..++.+...|.++...
T Consensus 162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~ 241 (517)
T PF12569_consen 162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHA 241 (517)
T ss_pred HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHC
Confidence 33333332211 1111 246788999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CC-------HHHHHHHHHHHHHcCCH
Q 002273 371 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP--TY-------AEAYNNLGVLYRDAGSI 441 (944)
Q Consensus 371 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p--~~-------~~a~~~la~~~~~~g~~ 441 (944)
|++++|.+.++.+.+++..+-.+....+..+.+.|+.++|.+.+......+- .. .......|.+|.+.|++
T Consensus 242 G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~ 321 (517)
T PF12569_consen 242 GDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDY 321 (517)
T ss_pred CCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhH
Confidence 9999999999999999999999999999999999999999999988765542 11 22334579999999999
Q ss_pred HHHHHHHHHHHhhCCCC
Q 002273 442 SLAIDAYEQCLKIDPDS 458 (944)
Q Consensus 442 ~eA~~~~~~al~l~P~~ 458 (944)
..|++.|..+.+..-+.
T Consensus 322 ~~ALk~~~~v~k~f~~~ 338 (517)
T PF12569_consen 322 GLALKRFHAVLKHFDDF 338 (517)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999988875543
No 107
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.48 E-value=1.7e-10 Score=145.66 Aligned_cols=386 Identities=13% Similarity=-0.014 Sum_probs=269.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHH
Q 002273 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAV-KLDPQNACAHTHCGILYKD 128 (944)
Q Consensus 50 ~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~~~~~~~~la~~~~~ 128 (944)
.....|..+...|++.+|+..+..+-.. +.-.......+..+...|++..+...+..+- .....++......+.++..
T Consensus 343 lh~raa~~~~~~g~~~~Al~~a~~a~d~-~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~ 421 (903)
T PRK04841 343 LHRAAAEAWLAQGFPSEAIHHALAAGDA-QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQS 421 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHCCCH-HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHH
Confidence 3345566778899999888766554111 1123445556777778888888777665431 1112344556777888899
Q ss_pred cCCHHHHHHHHHHHHHcCCCCh--hHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-----HHHHHHHHHHH
Q 002273 129 EGRLVEAAESYHKALSADPSYK--PAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY-----APAYYNLGVVY 201 (944)
Q Consensus 129 ~g~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~ 201 (944)
.|++++|...+.++....+... ......+.+...++.++...|++++|...++++++..+.. ..+...+|.++
T Consensus 422 ~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~ 501 (903)
T PRK04841 422 QHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVH 501 (903)
T ss_pred CCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH
Confidence 9999999999998876543211 0111234455567888899999999999999999864432 23567789999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHhhh
Q 002273 202 SELMQYDTALGCYEKAALERPM------YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI-AKNNMAIALTDLGT 274 (944)
Q Consensus 202 ~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~l~~~~~ 274 (944)
...|++++|...+++++..... ....+..++.++...|++++|...+++++........ .....+.++..++
T Consensus 502 ~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la- 580 (903)
T PRK04841 502 HCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRA- 580 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHH-
Confidence 9999999999999999875332 1245678899999999999999999999876322100 0000000011111
Q ss_pred hhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002273 275 KTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWH-----YADAMYNLGVAYGEMLKFDMAIVFYELA 349 (944)
Q Consensus 275 ~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~a 349 (944)
.++...|++++|...+++++..... ....+..++.++...|++++|...+.++
T Consensus 581 ----------------------~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a 638 (903)
T PRK04841 581 ----------------------QLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRL 638 (903)
T ss_pred ----------------------HHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2244568889999999998775321 2456677899999999999999999999
Q ss_pred HhhCCCC---HHHHH----HHHHHHHHCCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002273 350 FHFNPHC---AEACN----NLGVIYKDRDNLDKAVECYQMALSIKPNFS----QSLNNLGVVYTVQGKMDAAAEMIEKAI 418 (944)
Q Consensus 350 l~~~p~~---~~~~~----~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~l~~al 418 (944)
..+.... ..... .....+...|+.++|...+.......+... ..+..++.++...|++++|...+++++
T Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al 718 (903)
T PRK04841 639 ENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELN 718 (903)
T ss_pred HHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7763321 11111 122445568999999999877655332222 225678999999999999999999998
Q ss_pred HhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 002273 419 AANP------TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 459 (944)
Q Consensus 419 ~~~p------~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~ 459 (944)
.... ....++..+|.++...|+.++|...+++++++.....
T Consensus 719 ~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g 765 (903)
T PRK04841 719 ENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTG 765 (903)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccc
Confidence 8621 2356788999999999999999999999999886543
No 108
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.48 E-value=1.6e-12 Score=145.31 Aligned_cols=340 Identities=16% Similarity=0.096 Sum_probs=214.5
Q ss_pred EEEeecCCCccC--cHHHHHHhhhhhccCCcEEEEEEeccccCChhhHHHHHHHhh-----hCCceEeccCCCHHHHHHH
Q 002273 512 VIGYVSPDYFTH--SVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMK-----KGGIWRDIYGIDEKKVAAM 584 (944)
Q Consensus 512 riGy~S~d~~~h--~v~~~~~~~l~~~d~~~fev~~y~~~~~~d~~t~~~~~~~~~-----~~~~~~~~~~~~~~~~a~~ 584 (944)
||.+++..+..+ .....+..+...+....++|.+++.................. ....+..........+...
T Consensus 1 kI~ii~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (374)
T cd03801 1 KILLVTPEYPPSVGGAERHVLELARALAARGHEVTVLTPGDGGLPDEEEVGGIVVVRPPPLLRVRRLLLLLLLALRLRRL 80 (374)
T ss_pred CeeEEecccCCccCcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceeeecCcceecCCcccccchhHHHHHHHHHHHHH
Confidence 356666665544 344555666666666788888887754332211110000000 0000000000113457778
Q ss_pred hHhCCccEEEecCCCCCCCchhhhccCCcceeeecccCCCCCC------------------CCCccEEEecCCCCCcccc
Q 002273 585 VREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTG------------------LPTIDYRITDSLADPPETK 646 (944)
Q Consensus 585 i~~d~idilvdl~g~t~~~~~~~~a~r~ApvQ~~~~G~p~t~g------------------~~~~Dy~i~d~~~~p~~~~ 646 (944)
+...++||++-...+...........+-.|+-+.+.+...... +...|++++-....-....
T Consensus 81 ~~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~~~~ 160 (374)
T cd03801 81 LRRERFDVVHAHDWLALLAAALAARLLGIPLVLTVHGLEFGRPGNELGLLLKLARALERRALRRADRIIAVSEATREELR 160 (374)
T ss_pred hhhcCCcEEEEechhHHHHHHHHHHhcCCcEEEEeccchhhccccchhHHHHHHHHHHHHHHHhCCEEEEecHHHHHHHH
Confidence 8889999999877777655443334455666656555443221 2345766653222222223
Q ss_pred cccc---cceEEcCCCccccCCCCCC-CCCCCCCCCCCCCeEEEecCC--CCcCCHHHHHHHHHHHhHcCCceEEEecCC
Q 002273 647 QKHV---EELIRLPECFLCYTPSPEA-GPVCPTPALTNGFITFGSFNN--LAKITPKVLQVWARILCAVPNSRLVVKCKP 720 (944)
Q Consensus 647 ~~~~---e~~~~lp~~~~~~~~~~~~-~~~~~~~~~~~~~~~f~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~ 720 (944)
..+. .++..+|+.. ........ ...........+.++++.+++ ..|....++++|..+....|+.+|++.|.+
T Consensus 161 ~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~l~i~G~~ 239 (374)
T cd03801 161 ELGGVPPEKITVIPNGV-DTERFRPAPRAARRRLGIPEDEPVILFVGRLVPRKGVDLLLEALAKLRKEYPDVRLVIVGDG 239 (374)
T ss_pred hcCCCCCCcEEEecCcc-cccccCccchHHHhhcCCcCCCeEEEEecchhhhcCHHHHHHHHHHHhhhcCCeEEEEEeCc
Confidence 3333 3677777532 11111000 000112233444556666664 588999999999999999999999999854
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCccccc
Q 002273 721 FCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHN 799 (944)
Q Consensus 721 ~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r 799 (944)
.....+.+.+...++ .++|.|.|.++ ..+....+..+|+++.|..+ +.|++.+|||++|+|||+.....+...
T Consensus 240 ----~~~~~~~~~~~~~~~-~~~v~~~g~~~-~~~~~~~~~~~di~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~~~~~~~ 313 (374)
T cd03801 240 ----PLREELEALAAELGL-GDRVTFLGFVP-DEDLPALYAAADVFVLPSLYEGFGLVLLEAMAAGLPVVASDVGGIPEV 313 (374)
T ss_pred ----HHHHHHHHHHHHhCC-CcceEEEeccC-hhhHHHHHHhcCEEEecchhccccchHHHHHHcCCcEEEeCCCChhHH
Confidence 556667777778888 58999999987 68999999999999999877 669999999999999999554333221
Q ss_pred chhHHHhhcCCccccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 002273 800 VGVSLLTKVGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 866 (944)
Q Consensus 800 ~~~~~l~~~gl~~~v~--~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 866 (944)
+.. |-..++. .|++++++....+..|++.+.++++..++...+. |+++.+++.+.+.|+
T Consensus 314 -----~~~-~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 374 (374)
T cd03801 314 -----VED-GETGLLVPPGDPEALAEAILRLLDDPELRRRLGEAARERVAER--FSWDRVAARTEEVYY 374 (374)
T ss_pred -----hcC-CcceEEeCCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHh--cCHHHHHHHHHHhhC
Confidence 211 2223333 3469999999999999999999999988766544 899999999988773
No 109
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.47 E-value=2.9e-12 Score=128.27 Aligned_cols=152 Identities=20% Similarity=0.204 Sum_probs=129.4
Q ss_pred HhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHH
Q 002273 298 LVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAV 377 (944)
Q Consensus 298 l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 377 (944)
+|...|+++......++.. +|.. -+...++.++++..++++++.+|++.+.|..+|.+|...|++++|+
T Consensus 25 ~Y~~~g~~~~v~~~~~~~~--~~~~---------~~~~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 25 SYLLSPKWQAVRAEYQRLA--DPLH---------QFASQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHcchHHHHHHHHHHHh--Cccc---------cccCchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 3666777777544432221 1110 1113677899999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002273 378 ECYQMALSIKPNFSQSLNNLGVVY-TVQGK--MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 454 (944)
Q Consensus 378 ~~~~~al~~~p~~~~~~~~la~~~-~~~g~--~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l 454 (944)
..|+++++++|+++.++..+|.++ ...|+ +++|.+.++++++.+|++..+++.+|.++...|++++|+.+|++++++
T Consensus 94 ~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 94 LAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999999999975 67787 599999999999999999999999999999999999999999999999
Q ss_pred CCCChh
Q 002273 455 DPDSRN 460 (944)
Q Consensus 455 ~P~~~~ 460 (944)
+|.+.+
T Consensus 174 ~~~~~~ 179 (198)
T PRK10370 174 NSPRVN 179 (198)
T ss_pred CCCCcc
Confidence 998653
No 110
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.46 E-value=6e-11 Score=117.54 Aligned_cols=386 Identities=14% Similarity=0.069 Sum_probs=232.2
Q ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHH
Q 002273 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEA 135 (944)
Q Consensus 56 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 135 (944)
..+.+..+|++|++++..-.+.+|.+...+..+|.||+...+|..|.++|++.-.+.|......+..+..+++.+.+.+|
T Consensus 18 y~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADA 97 (459)
T KOG4340|consen 18 YRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADA 97 (459)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHH
Confidence 34577889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002273 136 AESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYE 215 (944)
Q Consensus 136 ~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 215 (944)
+......... .. ....++...+.+.+..+++..+....++.-. .+.+....+.|.+.++.|+++.|++-|+
T Consensus 98 LrV~~~~~D~----~~---L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~--en~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 98 LRVAFLLLDN----PA---LHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS--ENEADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred HHHHHHhcCC----HH---HHHHHHHHHHHHhcccccCcchHHHHHhccC--CCccchhccchheeeccccHHHHHHHHH
Confidence 9887665432 11 1233444455566677777777766654321 2456777888888888888888888888
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCcH-------------------------HHHHHHH
Q 002273 216 KAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV----SPNFE-------------------------IAKNNMA 266 (944)
Q Consensus 216 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~-------------------------~~~~~la 266 (944)
.+++...-++-.-++++.++++.+++..|+++....++. .|... .+.+..+
T Consensus 169 aAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKa 248 (459)
T KOG4340|consen 169 AALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKA 248 (459)
T ss_pred HHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhh
Confidence 888887777778888888888888888888877666543 33210 0111111
Q ss_pred HHHHHhhhhhhhhHHHHHhhcCCCCCc-----hh--HHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q 002273 267 IALTDLGTKTYGRALLLFRLNGSNFQS-----PF--FELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKF 339 (944)
Q Consensus 267 ~~l~~~~~~~~~~a~~~~~~~~~~~~~-----~~--~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 339 (944)
-++.+.++.+.++..+.. .++.... .+ ..+....+++.+..+-+.-.+.++|--.+..-++-.+|++..-|
T Consensus 249 AIeyq~~n~eAA~eaLtD--mPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf 326 (459)
T KOG4340|consen 249 AIEYQLRNYEAAQEALTD--MPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYF 326 (459)
T ss_pred hhhhhcccHHHHHHHhhc--CCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHH
Confidence 111122211111111000 0000000 00 11122234445555555555666665556666666666666555
Q ss_pred HHHHHHHHHHHhhCCCC-----HHHHHHHHHHHH-HCCCHHHHHHHHHHHHhhCCCCHHHHHHH-HHHHHH--c---CCH
Q 002273 340 DMAIVFYELAFHFNPHC-----AEACNNLGVIYK-DRDNLDKAVECYQMALSIKPNFSQSLNNL-GVVYTV--Q---GKM 407 (944)
Q Consensus 340 ~~A~~~~~~al~~~p~~-----~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l-a~~~~~--~---g~~ 407 (944)
+-|...+.+ +|+. ....+.+-..+. ..-..++|.+-+.+.-..- ..-+..+ +.+... . ...
T Consensus 327 ~lAADvLAE----n~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l---~~kLRklAi~vQe~r~~~dd~a~ 399 (459)
T KOG4340|consen 327 DLAADVLAE----NAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGML---TEKLRKLAIQVQEARHNRDDEAI 399 (459)
T ss_pred hHHHHHHhh----CcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcccHHHH
Confidence 555444322 2221 112222222222 2234444444433322111 0001111 111111 1 112
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhh
Q 002273 408 DAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 462 (944)
Q Consensus 408 ~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~ 462 (944)
..|++.|++++++. ..+....+++|+...++..+.+.|++..+...++....
T Consensus 400 R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~ehd~Wk 451 (459)
T KOG4340|consen 400 RKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCNDHDVWK 451 (459)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHhhhcccceee
Confidence 33455555555542 44567778888888888888888888888776664433
No 111
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.45 E-value=2.1e-12 Score=145.05 Aligned_cols=165 Identities=21% Similarity=0.143 Sum_probs=129.9
Q ss_pred eEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhccc
Q 002273 683 ITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSL 762 (944)
Q Consensus 683 ~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~ 762 (944)
++|..--...|..+.+++++..+.++.|+.+|+++|.+ ...+.+++.+++.|+ .++|.|.|.++ ..+....|..
T Consensus 191 i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~ivG~g----~~~~~~~~~~~~~~~-~~~v~~~g~~~-~~~l~~~~~~ 264 (367)
T cd05844 191 ILFVGRFVEKKGPLLLLEAFARLARRVPEVRLVIIGDG----PLLAALEALARALGL-GGRVTFLGAQP-HAEVRELMRR 264 (367)
T ss_pred EEEEEeeccccChHHHHHHHHHHHHhCCCeEEEEEeCc----hHHHHHHHHHHHcCC-CCeEEECCCCC-HHHHHHHHHh
Confidence 33333335689999999999999999999999999865 455678888889999 58999999987 6789999999
Q ss_pred ccEEecCCC-------CCCcccHHHhhhcCCcEEecCCCcccccchh--HHHhhcCCcccc--cCCHHHHHHHHHHHhcC
Q 002273 763 MDISLDTFP-------YAGTTTTCESLYMGVPCVTMAGSVHAHNVGV--SLLTKVGLKHLI--AKNEDEYVQLALQLASD 831 (944)
Q Consensus 763 ~Di~Ld~~~-------~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~--~~l~~~gl~~~v--~~~~~~y~~~a~~l~~d 831 (944)
+|+++-|.- .+.|++.+|||++|+|||+ +++++ .++.. |-..++ ..|++++++...++.+|
T Consensus 265 ad~~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~-------s~~~~~~e~i~~-~~~g~~~~~~d~~~l~~~i~~l~~~ 336 (367)
T cd05844 265 ARIFLQPSVTAPSGDAEGLPVVLLEAQASGVPVVA-------TRHGGIPEAVED-GETGLLVPEGDVAALAAALGRLLAD 336 (367)
T ss_pred CCEEEECcccCCCCCccCCchHHHHHHHcCCCEEE-------eCCCCchhheec-CCeeEEECCCCHHHHHHHHHHHHcC
Confidence 999988764 3568999999999999998 44441 01111 111233 35899999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChHHHHHHHHH
Q 002273 832 VTALANLRMSLRDLMSKSPVCDGQNFALGLES 863 (944)
Q Consensus 832 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~ 863 (944)
++.+.+++.+.++.+.+ .|+++.++..+++
T Consensus 337 ~~~~~~~~~~a~~~~~~--~~s~~~~~~~l~~ 366 (367)
T cd05844 337 PDLRARMGAAGRRRVEE--RFDLRRQTAKLEA 366 (367)
T ss_pred HHHHHHHHHHHHHHHHH--HCCHHHHHHHHhc
Confidence 99999999988887643 4999999988875
No 112
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.45 E-value=3.2e-11 Score=141.97 Aligned_cols=285 Identities=12% Similarity=0.036 Sum_probs=209.8
Q ss_pred CCCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 002273 42 TLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTH 121 (944)
Q Consensus 42 ~~~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 121 (944)
.-.|...+++..++..+...+++++|+.+++..++..|+....++.+|.++++.++++++... .++..-+
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~-------- 94 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFS-------- 94 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcc--------
Confidence 445668899999999999999999999999999999999999999999999999997776655 4444333
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 002273 122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVY 201 (944)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 201 (944)
...++ .+++++...+...+.+.. +++.+|.+|.+.|+.++|...|+++++.+|+++.++.++|..|
T Consensus 95 ------~~~~~-~~ve~~~~~i~~~~~~k~-------Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ 160 (906)
T PRK14720 95 ------QNLKW-AIVEHICDKILLYGENKL-------ALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSY 160 (906)
T ss_pred ------cccch-hHHHHHHHHHHhhhhhhH-------HHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 33344 455555555555666554 4888999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh-hhhhhhhH
Q 002273 202 SELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDL-GTKTYGRA 280 (944)
Q Consensus 202 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~-~~~~~~~a 280 (944)
... +.++|++++.+++.. +...+++.++.+++++.+..+|++......+-...... +
T Consensus 161 ae~-dL~KA~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~------- 218 (906)
T PRK14720 161 EEE-DKEKAITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHRE------- 218 (906)
T ss_pred HHh-hHHHHHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhc-------
Confidence 999 999999999999876 66778999999999999999999877655443222111 1
Q ss_pred HHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHH
Q 002273 281 LLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC 360 (944)
Q Consensus 281 ~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 360 (944)
.......+.-+-..|...+++++++.+++.+++.+|.+..+.
T Consensus 219 --------------------------------------~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~ 260 (906)
T PRK14720 219 --------------------------------------FTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAR 260 (906)
T ss_pred --------------------------------------cchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhH
Confidence 011234455555667777777777777777777777777777
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 002273 361 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY 424 (944)
Q Consensus 361 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~ 424 (944)
..++.+|. ++|.. ...++..+++.. +-..-.++..|+..|++.+..++.+
T Consensus 261 ~~l~~~y~--~kY~~-~~~~ee~l~~s~-----------l~~~~~~~~~~i~~fek~i~f~~G~ 310 (906)
T PRK14720 261 EELIRFYK--EKYKD-HSLLEDYLKMSD-----------IGNNRKPVKDCIADFEKNIVFDTGN 310 (906)
T ss_pred HHHHHHHH--HHccC-cchHHHHHHHhc-----------cccCCccHHHHHHHHHHHeeecCCC
Confidence 77777776 33332 344444443311 0001134566777777776665543
No 113
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.44 E-value=1.5e-10 Score=112.98 Aligned_cols=186 Identities=17% Similarity=0.145 Sum_probs=156.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 002273 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266 (944)
Q Consensus 187 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 266 (944)
.++...++-....+....|+.+.|..++++.....|++..+....|..+...|++++|+++|+..++.+|.+...+....
T Consensus 48 g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKl 127 (289)
T KOG3060|consen 48 GDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKL 127 (289)
T ss_pred CchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHH
Confidence 44455666677777888999999999999999888999999999999999999999999999999999999888777655
Q ss_pred HHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 002273 267 IALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFY 346 (944)
Q Consensus 267 ~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 346 (944)
.++...|+ -.+|++.+...++..+.+.++|..++.+|...|+|++|.-+|
T Consensus 128 Ailka~GK------------------------------~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fCl 177 (289)
T KOG3060|consen 128 AILKAQGK------------------------------NLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCL 177 (289)
T ss_pred HHHHHcCC------------------------------cHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHH
Confidence 55544444 478999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 002273 347 ELAFHFNPHCAEACNNLGVIYKDRD---NLDKAVECYQMALSIKPNFSQSLNNLGVVYT 402 (944)
Q Consensus 347 ~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 402 (944)
++++-+.|.++..+..+|.+++-+| +++-|.++|.++++++|.+...++.+-.+..
T Consensus 178 EE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~ 236 (289)
T KOG3060|consen 178 EELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGS 236 (289)
T ss_pred HHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHH
Confidence 9999999999998889998888766 6777889999999999877777766655443
No 114
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.44 E-value=8.4e-12 Score=138.38 Aligned_cols=319 Identities=14% Similarity=0.143 Sum_probs=193.8
Q ss_pred EEEeecCCCc-cCcHHHHHHhhhhhccCCcEEEEEEeccccCChhhHHHHHHHhhhCCceEec----------cCCCHHH
Q 002273 512 VIGYVSPDYF-THSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDI----------YGIDEKK 580 (944)
Q Consensus 512 riGy~S~d~~-~h~v~~~~~~~l~~~d~~~fev~~y~~~~~~d~~t~~~~~~~~~~~~~~~~~----------~~~~~~~ 580 (944)
||.++.+.+. .--+...+..+.......+++|++++....... .......+ .+..+ .-.....
T Consensus 1 kI~i~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 74 (348)
T cd03820 1 KILFVIPSLGNAGGAERVLSNLANALAEKGHEVTIISLDKGEPP-FYELDPKI-----KVIDLGDKRDSKLLARFKKLRR 74 (348)
T ss_pred CeEEEeccccCCCChHHHHHHHHHHHHhCCCeEEEEecCCCCCC-ccccCCcc-----ceeecccccccchhccccchHH
Confidence 4667777766 333334445555555556788888876543200 00001100 11111 1123467
Q ss_pred HHHHhHhCCccEEEecCCCCCCCchhhhccCCcceeeecccCCCCCC------------CCCccEEEecCCCCCcccccc
Q 002273 581 VAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTG------------LPTIDYRITDSLADPPETKQK 648 (944)
Q Consensus 581 ~a~~i~~d~idilvdl~g~t~~~~~~~~a~r~ApvQ~~~~G~p~t~g------------~~~~Dy~i~d~~~~p~~~~~~ 648 (944)
+.+.|+..++|+++-..++ ...-+..+..+..|+=+..-+.+.... +...|.+++..-..-......
T Consensus 75 ~~~~l~~~~~d~i~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~ 153 (348)
T cd03820 75 LRKLLKNNKPDVVISFLTS-LLTFLASLGLKIVKLIVSEHNSPDAYKKRLRRLLLRRLLYRRADAVVVLTEEDRALYYKK 153 (348)
T ss_pred HHHhhcccCCCEEEEcCch-HHHHHHHHhhccccEEEecCCCccchhhhhHHHHHHHHHHhcCCEEEEeCHHHHHHhhcc
Confidence 8889999999999977766 111222222222244333222222211 345677765321111112233
Q ss_pred cccceEEcCCCccccCCCCCCCCCCCCCCCCCCCeEEEecC--CCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHH
Q 002273 649 HVEELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFN--NLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSV 726 (944)
Q Consensus 649 ~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~--~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~ 726 (944)
+..++..+|+.. ..... ... ..++..+|++++ ...|..+.++++|.++.+..|+.+|++.|.+ ..
T Consensus 154 ~~~~~~vi~~~~-~~~~~--~~~------~~~~~~~i~~~g~~~~~K~~~~l~~~~~~l~~~~~~~~l~i~G~~----~~ 220 (348)
T cd03820 154 FNKNVVVIPNPL-PFPPE--EPS------SDLKSKRILAVGRLVPQKGFDLLIEAWAKIAKKHPDWKLRIVGDG----PE 220 (348)
T ss_pred CCCCeEEecCCc-Chhhc--ccc------CCCCCcEEEEEEeeccccCHHHHHHHHHHHHhcCCCeEEEEEeCC----CC
Confidence 456677777532 11111 000 123334455554 3488999999999999988999999999865 23
Q ss_pred HHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhHHH
Q 002273 727 RHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLL 805 (944)
Q Consensus 727 ~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l 805 (944)
+..+.+.+.+.|+ .++|.|.|. ..+....|..+|+++-|..+ +.|++++|||++|+|||+...... ...+
T Consensus 221 ~~~~~~~~~~~~~-~~~v~~~g~---~~~~~~~~~~ad~~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~-----~~~~ 291 (348)
T cd03820 221 REALEALIKELGL-EDRVILLGF---TKNIEEYYAKASIFVLTSRFEGFPMVLLEAMAFGLPVISFDCPTG-----PSEI 291 (348)
T ss_pred HHHHHHHHHHcCC-CCeEEEcCC---cchHHHHHHhCCEEEeCccccccCHHHHHHHHcCCCEEEecCCCc-----hHhh
Confidence 4556667788888 589999987 46788889999999988866 669999999999999998431111 1112
Q ss_pred hhcCCccccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 002273 806 TKVGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLE 862 (944)
Q Consensus 806 ~~~gl~~~v~--~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e 862 (944)
..-|-..++. .|++++++...++.+|++.++++++..++.. + .|+++.+++.++
T Consensus 292 ~~~~~~g~~~~~~~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~ 347 (348)
T cd03820 292 IEDGVNGLLVPNGDVEALAEALLRLMEDEELRKRMGANARESA-E--RFSIENIIKQWE 347 (348)
T ss_pred hccCcceEEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHH-H--HhCHHHHHHHhc
Confidence 2223233443 4679999999999999999999999886543 2 388988887764
No 115
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=99.43 E-value=1.3e-11 Score=138.39 Aligned_cols=336 Identities=16% Similarity=0.064 Sum_probs=200.7
Q ss_pred EEEeecCCCc-cCcHHHHHHhhhhhccCCcEEEEEEeccccCChhhHHHHHHHhhhCCceEe-ccCCCHHHHHHHhHhCC
Q 002273 512 VIGYVSPDYF-THSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRD-IYGIDEKKVAAMVREDK 589 (944)
Q Consensus 512 riGy~S~d~~-~h~v~~~~~~~l~~~d~~~fev~~y~~~~~~d~~t~~~~~~~~~~~~~~~~-~~~~~~~~~a~~i~~d~ 589 (944)
+|+++++..- .--+..++..+.........++.++........... .... ....... ........+.+.++..+
T Consensus 1 kI~~v~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (366)
T cd03822 1 RIALVSPYPPRKCGIATFTTDLVNALSARGPDVLVVSVAALYPSLLY-GGEQ---EVVRVIVLDNPLDYRRAARAIRLSG 76 (366)
T ss_pred CeEEecCCCCCCCcHHHHHHHHHHHhhhcCCeEEEEEeecccCcccC-CCcc---cceeeeecCCchhHHHHHHHHhhcC
Confidence 4778877543 233456666666666666677777754432111000 0000 0001111 12233456788899999
Q ss_pred ccEEEecCCCC--CCCchhhhc----cCCcceeeecccC-CCCCC----------CCCccEEEecC-CCCCccccccccc
Q 002273 590 IDILVELTGHT--ANNKLGMMA----CQPAPVQVTWIGY-PNTTG----------LPTIDYRITDS-LADPPETKQKHVE 651 (944)
Q Consensus 590 idilvdl~g~t--~~~~~~~~a----~r~ApvQ~~~~G~-p~t~g----------~~~~Dy~i~d~-~~~p~~~~~~~~e 651 (944)
+||++-...+. .......+. .+..|+-++.-++ +.... +...|.+++.. -..-.-....+.+
T Consensus 77 ~dii~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~ 156 (366)
T cd03822 77 PDVVVIQHEYGIFGGEAGLYLLLLLRGLGIPVVVTLHTVLLHEPRPGDRALLRLLLRRADAVIVMSSELLRALLLRAYPE 156 (366)
T ss_pred CCEEEEeeccccccchhhHHHHHHHhhcCCCEEEEEecCCccccchhhhHHHHHHHhcCCEEEEeeHHHHHHHHhhcCCC
Confidence 99998644222 111111111 2556776665554 21111 12346655442 0000000122357
Q ss_pred ceEEcCCCccccCCCCCCCCCCCCCCCCCCCeEEEecCC--CCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHH-H
Q 002273 652 ELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNN--LAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVR-H 728 (944)
Q Consensus 652 ~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~-~ 728 (944)
++..+|+..-...+. ............+.++++++++ ..|..+.+++++.++....|+.+|++.|.+....... .
T Consensus 157 ~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~~~~~~~~~~l~i~G~~~~~~~~~~~ 234 (366)
T cd03822 157 KIAVIPHGVPDPPAE--PPESLKALGGLDGRPVLLTFGLLRPYKGLELLLEALPLLVAKHPDVRLLVAGETHPDLERYRG 234 (366)
T ss_pred cEEEeCCCCcCcccC--CchhhHhhcCCCCCeEEEEEeeccCCCCHHHHHHHHHHHHhhCCCeEEEEeccCccchhhhhh
Confidence 888888643111111 0000011122334455666664 4788899999999999999999999998653221111 1
Q ss_pred HHHHHHHHcCCCCCcEEEccC-ccCcHHHHHhcccccEEecCCCCC---CcccHHHhhhcCCcEEecCCCcccccchhH-
Q 002273 729 RFLSTLEQLGLESLRVDLLPL-ILLNHDHMQAYSLMDISLDTFPYA---GTTTTCESLYMGVPCVTMAGSVHAHNVGVS- 803 (944)
Q Consensus 729 ~~~~~~~~~gi~~~rv~~~~~-~~~~~~~~~~~~~~Di~Ld~~~~~---~~~t~~eal~~gvPvvt~~g~~~~~r~~~~- 803 (944)
...+.+++.|+ .++|.|.|. ++ ..+....|+.+|+++-|+.+. .+.+.+|||++|+|||+ +.+++.
T Consensus 235 ~~~~~i~~~~~-~~~v~~~~~~~~-~~~~~~~~~~ad~~v~ps~~e~~~~~~~~~Ea~a~G~PvI~-------~~~~~~~ 305 (366)
T cd03822 235 EAYALAERLGL-ADRVIFINRYLP-DEELPELFSAADVVVLPYRSADQTQSGVLAYAIGFGKPVIS-------TPVGHAE 305 (366)
T ss_pred hhHhHHHhcCC-CCcEEEecCcCC-HHHHHHHHhhcCEEEecccccccccchHHHHHHHcCCCEEe-------cCCCChh
Confidence 11134678898 589999987 65 688999999999999887554 57899999999999999 444421
Q ss_pred HHhhcCCccccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 002273 804 LLTKVGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 866 (944)
Q Consensus 804 ~l~~~gl~~~v~--~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 866 (944)
.+.. +-..++. .|.+++++....+.+|++.+.++++..+.... . |+++.+++.+.++|+
T Consensus 306 ~i~~-~~~g~~~~~~d~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~--~-~s~~~~~~~~~~~~~ 366 (366)
T cd03822 306 EVLD-GGTGLLVPPGDPAALAEAIRRLLADPELAQALRARAREYAR--A-MSWERVAERYLRLLA 366 (366)
T ss_pred eeee-CCCcEEEcCCCHHHHHHHHHHHHcChHHHHHHHHHHHHHHh--h-CCHHHHHHHHHHHhC
Confidence 1111 2233443 57999999999999999999999999988764 3 999999999998873
No 116
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.43 E-value=1.4e-11 Score=123.40 Aligned_cols=125 Identities=18% Similarity=0.150 Sum_probs=116.9
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHCCC--HHHHHH
Q 002273 302 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIY-KDRDN--LDKAVE 378 (944)
Q Consensus 302 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~--~~~A~~ 378 (944)
.++.++++..++++++.+|++.+.|..+|.+|...|++++|+..|+++++++|+++.++..+|.++ ...|+ +++|.+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 455689999999999999999999999999999999999999999999999999999999999975 67777 599999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 002273 379 CYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE 426 (944)
Q Consensus 379 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~ 426 (944)
.++++++.+|+++.+++.+|..+...|++++|+.+++++++..|.+..
T Consensus 132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 132 MIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 999999999999999999999999999999999999999999886543
No 117
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=99.43 E-value=4.4e-11 Score=134.49 Aligned_cols=334 Identities=12% Similarity=0.034 Sum_probs=201.9
Q ss_pred EEEeecCCCccCcHHHHHHhhhhhccCCcEEEEEEeccccCChhh--HHHHHHHhhhCCceEeccCCCHHH---H----H
Q 002273 512 VIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKT--IRFREKVMKKGGIWRDIYGIDEKK---V----A 582 (944)
Q Consensus 512 riGy~S~d~~~h~v~~~~~~~l~~~d~~~fev~~y~~~~~~d~~t--~~~~~~~~~~~~~~~~~~~~~~~~---~----a 582 (944)
||.++++.+..--+...+..+....++.+.|+.+|......+... .++...+ . +... .++... . .
T Consensus 1 ki~~~~~~~~~GGv~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~-~--g~~~---~~~~~~~~~~~~~~~ 74 (372)
T cd03792 1 KVLHVNSTPYGGGVAEILHSLVPLMRDLGVDTRWEVIKGDPEFFNVTKKFHNAL-Q--GADI---ELSEEEKEIYLEWNE 74 (372)
T ss_pred CeEEEeCCCCCCcHHHHHHHHHHHHHHcCCCceEEecCCChhHHHHHHHhhHhh-c--CCCC---CCCHHHHHHHHHHHH
Confidence 477788877777788888888888888889999887654332111 1111111 0 1111 232221 1 1
Q ss_pred HH----hHhCCccEEEecCCCCCCC-chhhhccC-CcceeeecccCCCCC----------CCCCccEEEecCCCCCcccc
Q 002273 583 AM----VREDKIDILVELTGHTANN-KLGMMACQ-PAPVQVTWIGYPNTT----------GLPTIDYRITDSLADPPETK 646 (944)
Q Consensus 583 ~~----i~~d~idilvdl~g~t~~~-~~~~~a~r-~ApvQ~~~~G~p~t~----------g~~~~Dy~i~d~~~~p~~~~ 646 (944)
.. +...+.||++- |+... -+..+..+ ..|+=+++-+...+. .+...|.+++-. +....
T Consensus 75 ~~~~~~~~~~~~Dvv~~---h~~~~~~~~~~~~~~~~~~i~~~H~~~~~~~~~~~~~~~~~~~~~d~~i~~~---~~~~~ 148 (372)
T cd03792 75 ENAERPLLDLDADVVVI---HDPQPLALPLFKKKRGRPWIWRCHIDLSSPNRRVWDFLQPYIEDYDAAVFHL---PEYVP 148 (372)
T ss_pred HHhccccccCCCCEEEE---CCCCchhHHHhhhcCCCeEEEEeeeecCCCcHHHHHHHHHHHHhCCEEeecH---HHhcC
Confidence 11 22568999963 22221 12222222 455433332211110 012245444321 11112
Q ss_pred cccccceEEcCCCccccCCC--CCCC----CCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCceEEEec
Q 002273 647 QKHVEELIRLPECFLCYTPS--PEAG----PVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKC 718 (944)
Q Consensus 647 ~~~~e~~~~lp~~~~~~~~~--~~~~----~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~ 718 (944)
..+..+.+.+|+..=...+. ...+ ..+...+++.+..+++.+.|. .|..+.+++++..+.+..|+.+|+++|
T Consensus 149 ~~~~~~~~vipngvd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vgrl~~~Kg~~~ll~a~~~l~~~~~~~~l~i~G 228 (372)
T cd03792 149 PQVPPRKVIIPPSIDPLSGKNRELSPADIEYILEKYGIDPERPYITQVSRFDPWKDPFGVIDAYRKVKERVPDPQLVLVG 228 (372)
T ss_pred CCCCCceEEeCCCCCCCccccCCCCHHHHHHHHHHhCCCCCCcEEEEEeccccccCcHHHHHHHHHHHhhCCCCEEEEEe
Confidence 22332333666532111000 0000 011123455666778888865 899999999999999888999999998
Q ss_pred CCCCCHH-HHHHHHHHHHHcCCCCCcEEEccCcc-CcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCc
Q 002273 719 KPFCCDS-VRHRFLSTLEQLGLESLRVDLLPLIL-LNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSV 795 (944)
Q Consensus 719 ~~~~~~~-~~~~~~~~~~~~gi~~~rv~~~~~~~-~~~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~ 795 (944)
.+...+. ....+.+..+..|+ .++|.|.+..+ ...+....|+.+|+++-|..+ +.|.+++|||++|+|||+
T Consensus 229 ~g~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~ad~~v~~s~~Eg~g~~~lEA~a~G~Pvv~----- 302 (372)
T cd03792 229 SGATDDPEGWIVYEEVLEYAEG-DPDIHVLTLPPVSDLEVNALQRASTVVLQKSIREGFGLTVTEALWKGKPVIA----- 302 (372)
T ss_pred CCCCCCchhHHHHHHHHHHhCC-CCCeEEEecCCCCHHHHHHHHHhCeEEEeCCCccCCCHHHHHHHHcCCCEEE-----
Confidence 7643222 22223333345677 47899988763 357788889999999988766 669999999999999998
Q ss_pred ccccchh-HHHhhcCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 002273 796 HAHNVGV-SLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 867 (944)
Q Consensus 796 ~~~r~~~-~~l~~~gl~~~v~~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 867 (944)
++++. .-.-.-|...+++.+.++......++.+|++.++.+++..++.... .|+++..++.+.+.|+.
T Consensus 303 --s~~~~~~~~i~~~~~g~~~~~~~~~a~~i~~ll~~~~~~~~~~~~a~~~~~~--~~s~~~~~~~~~~~~~~ 371 (372)
T cd03792 303 --GPVGGIPLQIEDGETGFLVDTVEEAAVRILYLLRDPELRRKMGANAREHVRE--NFLITRHLKDYLYLISK 371 (372)
T ss_pred --cCCCCchhhcccCCceEEeCCcHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH--HcCHHHHHHHHHHHHHh
Confidence 44431 1111224455667888888888888999999999999999887643 49999999999999875
No 118
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.40 E-value=9.1e-10 Score=139.10 Aligned_cols=349 Identities=13% Similarity=-0.014 Sum_probs=249.9
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC---------CHHH
Q 002273 49 KDALSYANILRSRNKFVDALALYEIVLE-KDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ---------NACA 118 (944)
Q Consensus 49 ~~~~~~A~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~ 118 (944)
......+..+...|++..+..+++.+-. ....++......+.++...|++++|...+.++....+. ....
T Consensus 375 ~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~ 454 (903)
T PRK04841 375 DILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEF 454 (903)
T ss_pred HHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHH
Confidence 4455567777888888887777665411 11234555677888889999999999999988764221 1234
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC------CHH
Q 002273 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH------YAP 192 (944)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~ 192 (944)
...++.++...|++++|...+++++...+.... ...+.+...+|.++...|++++|...+++++..... ...
T Consensus 455 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~ 532 (903)
T PRK04841 455 NALRAQVAINDGDPEEAERLAELALAELPLTWY--YSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALW 532 (903)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccH--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHH
Confidence 556788899999999999999999986554322 223445677889999999999999999999876332 134
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 002273 193 AYYNLGVVYSELMQYDTALGCYEKAALERPM--------YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNN 264 (944)
Q Consensus 193 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 264 (944)
++..+|.++...|++++|...+++++..... ....+..+|.++...|++++|...+.+++..........
T Consensus 533 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~-- 610 (903)
T PRK04841 533 SLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQ-- 610 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchH--
Confidence 5678899999999999999999999875221 223456788999999999999999999987644221110
Q ss_pred HHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCC---HHHH----HHHHHHHHHcC
Q 002273 265 MAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHY---ADAM----YNLGVAYGEML 337 (944)
Q Consensus 265 la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~---~~~~----~~la~~~~~~g 337 (944)
....+..++ .+....|++++|...+.++....... .... ......+...|
T Consensus 611 ~~~~~~~la-----------------------~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 667 (903)
T PRK04841 611 QLQCLAMLA-----------------------KISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTG 667 (903)
T ss_pred HHHHHHHHH-----------------------HHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCC
Confidence 111111122 12556788899999999987653321 1111 11224455688
Q ss_pred ChHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHcCCH
Q 002273 338 KFDMAIVFYELAFHFNPHCA----EACNNLGVIYKDRDNLDKAVECYQMALSIKP------NFSQSLNNLGVVYTVQGKM 407 (944)
Q Consensus 338 ~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~ 407 (944)
+.++|...+.......+... ..+..++.++...|++++|...+++++.... ....++..+|.++...|+.
T Consensus 668 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~ 747 (903)
T PRK04841 668 DKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRK 747 (903)
T ss_pred CHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCH
Confidence 99999998877665332222 2256789999999999999999999987632 2345788899999999999
Q ss_pred HHHHHHHHHHHHhCCCC
Q 002273 408 DAAAEMIEKAIAANPTY 424 (944)
Q Consensus 408 ~~A~~~l~~al~~~p~~ 424 (944)
++|...+.+++++....
T Consensus 748 ~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 748 SEAQRVLLEALKLANRT 764 (903)
T ss_pred HHHHHHHHHHHHHhCcc
Confidence 99999999999986543
No 119
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.40 E-value=3.6e-11 Score=118.78 Aligned_cols=176 Identities=22% Similarity=0.211 Sum_probs=145.3
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCH
Q 002273 244 AIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYA 323 (944)
Q Consensus 244 A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~ 323 (944)
+...+-+....+|++..+ .+++..+...|.. +.+..+..++...+|.+.
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a------------------------------~~~l~~~~~~~~~~~~d~ 100 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDA------------------------------DSSLAVLQKSAIAYPKDR 100 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccc------------------------------cchHHHHhhhhccCcccH
Confidence 445555555566666665 5555554444333 666666667677777777
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002273 324 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 403 (944)
Q Consensus 324 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 403 (944)
..+..+|...+..|++.+|+..+.++....|+++++|..+|.+|.+.|++++|...|.+++++.|+.+.+..|+|..|.-
T Consensus 101 ~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L 180 (257)
T COG5010 101 ELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLL 180 (257)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHH
Confidence 78878889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002273 404 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 450 (944)
Q Consensus 404 ~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~ 450 (944)
.|+++.|..++..+....+.+..+..+|+.+....|++.+|.+.-.+
T Consensus 181 ~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 181 RGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred cCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 99999999999999988888899999999999999999999877554
No 120
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.40 E-value=8.8e-09 Score=112.56 Aligned_cols=376 Identities=14% Similarity=0.159 Sum_probs=210.8
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 002273 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSG--NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (944)
Q Consensus 48 ~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (944)
+..|+.....+..+|+...-...|.++|..-|- +...|-..-......+-.+-++..|++.++.+|...+ .....
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~e---eyie~ 178 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEARE---EYIEY 178 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHH---HHHHH
Confidence 457778888899999999999999999998773 5566766666777788888999999999999987643 33455
Q ss_pred HHHcCCHHHHHHHHHHHHHcCC-------CChhH-------------------------------HhHHHHHHHHHHHHH
Q 002273 126 YKDEGRLVEAAESYHKALSADP-------SYKPA-------------------------------AECLAIVLTDLGTSL 167 (944)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~p-------~~~~~-------------------------------~~~la~~~~~lg~~~ 167 (944)
+...++.++|.+.|...+..+. .+... ...++.++..|+..|
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYY 258 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYY 258 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHH
Confidence 6778888888888877654321 11111 112345677899999
Q ss_pred HHcCChHHHHHHHHHHHhhCC---CCHHHHHHH------------H----------------------------------
Q 002273 168 KLAGNTQDGIQKYYEALKIDP---HYAPAYYNL------------G---------------------------------- 198 (944)
Q Consensus 168 ~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l------------a---------------------------------- 198 (944)
.+.|.+++|...|+++++.-- +...++... .
T Consensus 259 Ir~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lN 338 (835)
T KOG2047|consen 259 IRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLN 338 (835)
T ss_pred HHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHH
Confidence 999999999999999987521 111111000 0
Q ss_pred ----------------HHHHHcCCHHHHHHHHHHHHH-hCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 002273 199 ----------------VVYSELMQYDTALGCYEKAAL-ERPM-----YAEAYCNMGVIYKNRGDLESAIACYERCLAVSP 256 (944)
Q Consensus 199 ----------------~~~~~~g~~~~A~~~~~~al~-~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 256 (944)
.+-...|+..+-+..|.++++ .+|. -...|..+|..|...|+.+.|...|+++.+..-
T Consensus 339 sVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y 418 (835)
T KOG2047|consen 339 SVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY 418 (835)
T ss_pred HHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc
Confidence 011112334444444444443 2222 224555666666666666666666666665533
Q ss_pred CcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCC---------------
Q 002273 257 NFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWH--------------- 321 (944)
Q Consensus 257 ~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~--------------- 321 (944)
.... .|+.+++.. +++-....+++.|+.+.+++......
T Consensus 419 ~~v~---dLa~vw~~w-----------------------aemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~r 472 (835)
T KOG2047|consen 419 KTVE---DLAEVWCAW-----------------------AEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQAR 472 (835)
T ss_pred cchH---HHHHHHHHH-----------------------HHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHH
Confidence 2211 111222111 12223344455555555554432111
Q ss_pred ---CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCCHHHHHH
Q 002273 322 ---YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK--PNFSQSLNN 396 (944)
Q Consensus 322 ---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~ 396 (944)
+..+|..++......|-++.....|++.+.+.--.|.+..+.|..+....-++++.+.|++.+.+. |.-.++|..
T Consensus 473 lhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~t 552 (835)
T KOG2047|consen 473 LHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNT 552 (835)
T ss_pred HHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHH
Confidence 123445555555555555555556666655555555555555655555555566666666555553 233333332
Q ss_pred HHHHH---HHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002273 397 LGVVY---TVQGKMDAAAEMIEKAIAANPTY--AEAYNNLGVLYRDAGSISLAIDAYEQCL 452 (944)
Q Consensus 397 la~~~---~~~g~~~~A~~~l~~al~~~p~~--~~a~~~la~~~~~~g~~~eA~~~~~~al 452 (944)
+-..+ +.--+.+.|...|++|++.-|.. -.++...+.+-.+-|-...|+..|++|-
T Consensus 553 YLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 553 YLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 22111 12234555666666666554421 1233444445555555555555555543
No 121
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=99.40 E-value=3e-11 Score=135.04 Aligned_cols=325 Identities=16% Similarity=0.113 Sum_probs=196.1
Q ss_pred EEeecCCCccCcHHHHHHhhhhhccCCcEEEEEEeccccCChhhHHHHHHHhhhCCceEec--cC-----CCHHHHHHHh
Q 002273 513 IGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDI--YG-----IDEKKVAAMV 585 (944)
Q Consensus 513 iGy~S~d~~~h~v~~~~~~~l~~~d~~~fev~~y~~~~~~d~~t~~~~~~~~~~~~~~~~~--~~-----~~~~~~a~~i 585 (944)
|.++.+.+..=-+...+..+.......++++.+++.....+ ....++.. .-....+ .. .....+.+.+
T Consensus 2 i~~i~~~~~~gG~~~~~~~l~~~l~~~~~~v~~~~~~~~~~-~~~~~~~~----~i~v~~~~~~~~~~~~~~~~~~~~~~ 76 (365)
T cd03807 2 VLHVITGLDVGGAERMLVRLLKGLDRDRFEHVVISLTDRGE-LGEELEEA----GVPVYCLGKRPGRPDPGALLRLYKLI 76 (365)
T ss_pred eEEEEeeccCccHHHHHHHHHHHhhhccceEEEEecCcchh-hhHHHHhc----CCeEEEEecccccccHHHHHHHHHHH
Confidence 44555555433344455566777766778888776543221 11122210 0011111 11 0124577888
Q ss_pred HhCCccEEEecCCCCCCCchhhhcc-CCcceeeecccCCCCCC--------------CCCccEEEecCCCCCcccc----
Q 002273 586 REDKIDILVELTGHTANNKLGMMAC-QPAPVQVTWIGYPNTTG--------------LPTIDYRITDSLADPPETK---- 646 (944)
Q Consensus 586 ~~d~idilvdl~g~t~~~~~~~~a~-r~ApvQ~~~~G~p~t~g--------------~~~~Dy~i~d~~~~p~~~~---- 646 (944)
+..++||++-...++.......... +-.|+-.+..+.....+ ....|.+++- .+...
T Consensus 77 ~~~~~div~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~----s~~~~~~~~ 152 (365)
T cd03807 77 RRLRPDVVHTWMYHADLYGGLAARLAGVPPVIWGIRHSDLDLGKKSTRLVARLRRLLSSFIPLIVAN----SAAAAEYHQ 152 (365)
T ss_pred HhhCCCEEEeccccccHHHHHHHHhcCCCcEEEEecCCcccccchhHhHHHHHHHHhccccCeEEec----cHHHHHHHH
Confidence 8999999986554432211111111 34455554444443321 1223443321 11111
Q ss_pred --cccccceEEcCCCccc--cCCCCCCC-CCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCceEEEecC
Q 002273 647 --QKHVEELIRLPECFLC--YTPSPEAG-PVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCK 719 (944)
Q Consensus 647 --~~~~e~~~~lp~~~~~--~~~~~~~~-~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~ 719 (944)
..-.+++..+|+..-. +.+..... ..+...+++++.++|+.+++. .|..+.+++++.++....|+.+|++.|.
T Consensus 153 ~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~ 232 (365)
T cd03807 153 AIGYPPKKIVVIPNGVDTERFSPDLDARARLREELGLPEDTFLIGIVARLHPQKDHATLLRAAALLLKKFPNARLLLVGD 232 (365)
T ss_pred HcCCChhheeEeCCCcCHHhcCCcccchHHHHHhcCCCCCCeEEEEecccchhcCHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 1223566666653211 11111100 011223455666777777754 7889999999999999999999999986
Q ss_pred CCCCHHHHHHHHHHHH-HcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCccc
Q 002273 720 PFCCDSVRHRFLSTLE-QLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHA 797 (944)
Q Consensus 720 ~~~~~~~~~~~~~~~~-~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~ 797 (944)
+.. ...+..... ..|+ .++|.|.|.. .+....|..+|+++-|..+ +.|++.+|||++|+|||+
T Consensus 233 ~~~----~~~~~~~~~~~~~~-~~~v~~~g~~---~~~~~~~~~adi~v~ps~~e~~~~~~~Ea~a~g~PvI~------- 297 (365)
T cd03807 233 GPD----RANLELLALKELGL-EDKVILLGER---SDVPALLNALDVFVLSSLSEGFPNVLLEAMACGLPVVA------- 297 (365)
T ss_pred Ccc----hhHHHHHHHHhcCC-CceEEEcccc---ccHHHHHHhCCEEEeCCccccCCcHHHHHHhcCCCEEE-------
Confidence 532 223333333 7788 5899999864 4677888999999988876 779999999999999999
Q ss_pred ccchh--HHHhhcCCcccc--cCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 002273 798 HNVGV--SLLTKVGLKHLI--AKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 866 (944)
Q Consensus 798 ~r~~~--~~l~~~gl~~~v--~~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 866 (944)
++.++ .++.. ..++ ..|.+++++....+.+|++.+..+++..++...+ .|++..+++.++++|+
T Consensus 298 ~~~~~~~e~~~~---~g~~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~--~~s~~~~~~~~~~~y~ 365 (365)
T cd03807 298 TDVGDNAELVGD---TGFLVPPGDPEALAEAIEALLADPALRQALGEAARERIEE--NFSIEAMVEAYEELYR 365 (365)
T ss_pred cCCCChHHHhhc---CCEEeCCCCHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHhC
Confidence 44441 11111 2222 3589999999999999999999999998887654 4999999999999884
No 122
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=99.39 E-value=1.3e-11 Score=138.60 Aligned_cols=177 Identities=15% Similarity=0.151 Sum_probs=132.6
Q ss_pred CCCCCCeEEEecCC--CCcCCHHHHHHHHHHHhHcCCceEEEecCCCCC-----HHHHHHHHHHHHHcCCCCCcEEEccC
Q 002273 677 ALTNGFITFGSFNN--LAKITPKVLQVWARILCAVPNSRLVVKCKPFCC-----DSVRHRFLSTLEQLGLESLRVDLLPL 749 (944)
Q Consensus 677 ~~~~~~~~f~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~-----~~~~~~~~~~~~~~gi~~~rv~~~~~ 749 (944)
+++.+..+++...+ ..|..+.++++|.++.+..|+.+|+++|.+... ....+.+.+.+...| ++|.|+|.
T Consensus 188 ~~~~~~~~il~~Grl~~~Kg~~~Li~A~~~l~~~~p~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~---~~v~~~G~ 264 (380)
T PRK15484 188 NISPDETVLLYAGRISPDKGILLLMQAFEKLATAHSNLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIG---DRCIMLGG 264 (380)
T ss_pred CCCCCCeEEEEeccCccccCHHHHHHHHHHHHHhCCCeEEEEEeCCccccccchhHHHHHHHHHHHhcC---CcEEEeCC
Confidence 44444455665554 589999999999999999999999999865321 223445555555554 57999999
Q ss_pred ccCcHHHHHhcccccEEecCCC--CCCcccHHHhhhcCCcEEecCCCcccccchhH--HHhhcCCccc-c--cCCHHHHH
Q 002273 750 ILLNHDHMQAYSLMDISLDTFP--YAGTTTTCESLYMGVPCVTMAGSVHAHNVGVS--LLTKVGLKHL-I--AKNEDEYV 822 (944)
Q Consensus 750 ~~~~~~~~~~~~~~Di~Ld~~~--~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~--~l~~~gl~~~-v--~~~~~~y~ 822 (944)
++ ..+....|+.+|+++-|+. .+.|.+.+|||+||+|||+ ++.|+. ++. -|...+ + ..|++++.
T Consensus 265 ~~-~~~l~~~~~~aDv~v~pS~~~E~f~~~~lEAma~G~PVI~-------s~~gg~~Eiv~-~~~~G~~l~~~~d~~~la 335 (380)
T PRK15484 265 QP-PEKMHNYYPLADLVVVPSQVEEAFCMVAVEAMAAGKPVLA-------STKGGITEFVL-EGITGYHLAEPMTSDSII 335 (380)
T ss_pred CC-HHHHHHHHHhCCEEEeCCCCccccccHHHHHHHcCCCEEE-------eCCCCcHhhcc-cCCceEEEeCCCCHHHHH
Confidence 86 6788999999999988775 4568999999999999999 555410 111 133333 3 35889999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 002273 823 QLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNM 868 (944)
Q Consensus 823 ~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 868 (944)
+...+|.+|++. .++++..|+...+ .|+++.+++.+++.|.+.
T Consensus 336 ~~I~~ll~d~~~-~~~~~~ar~~~~~--~fsw~~~a~~~~~~l~~~ 378 (380)
T PRK15484 336 SDINRTLADPEL-TQIAEQAKDFVFS--KYSWEGVTQRFEEQIHNW 378 (380)
T ss_pred HHHHHHHcCHHH-HHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHh
Confidence 999999999974 6788888877653 499999999999999764
No 123
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.39 E-value=1.1e-08 Score=111.90 Aligned_cols=405 Identities=15% Similarity=0.134 Sum_probs=248.8
Q ss_pred CCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh--------CCHHHHHHHHHHHHhcCCC
Q 002273 43 LKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQ--------NMGRLAFDSFSEAVKLDPQ 114 (944)
Q Consensus 43 ~~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~p~ 114 (944)
..|.+...|+........ .-..+-.-+|+++++.-|.+...|+..-..-..+ ..|+.--.+|++++-.--+
T Consensus 22 Rnp~svk~W~RYIe~k~~-sp~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mHk 100 (835)
T KOG2047|consen 22 RNPFSVKCWLRYIEHKAG-SPDKQRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMHK 100 (835)
T ss_pred cCchhHHHHHHHHHHHcc-CChHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHhc
Confidence 456677777776554333 3345566789999999999988887655332211 2345556677777765566
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHH
Q 002273 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAY 194 (944)
Q Consensus 115 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 194 (944)
-+.+|......+..+|+...-...|.+++..-|-.... .++-..-......+-.+-++..|++.++..|...+
T Consensus 101 mpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~-----rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~e-- 173 (835)
T KOG2047|consen 101 MPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHD-----RIWDLYLKFVESHGLPETSIRVYRRYLKVAPEARE-- 173 (835)
T ss_pred CCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhc-----cchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHH--
Confidence 77889999999999999999999999999877753221 12222233344556677888888888888876533
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh------------------------CCC---------------------CHHHHH
Q 002273 195 YNLGVVYSELMQYDTALGCYEKAALE------------------------RPM---------------------YAEAYC 229 (944)
Q Consensus 195 ~~la~~~~~~g~~~~A~~~~~~al~~------------------------~p~---------------------~~~~~~ 229 (944)
.....+...+++++|.+.|...+.. +|+ -...|.
T Consensus 174 -eyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~ 252 (835)
T KOG2047|consen 174 -EYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWC 252 (835)
T ss_pred -HHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHH
Confidence 3344566777777777777666431 121 124678
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC---CcHHHHHHHHH-----HHHHhh-------hhhhhhHHH------------
Q 002273 230 NMGVIYKNRGDLESAIACYERCLAVSP---NFEIAKNNMAI-----ALTDLG-------TKTYGRALL------------ 282 (944)
Q Consensus 230 ~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~-----~l~~~~-------~~~~~~a~~------------ 282 (944)
.||..|.+.|.+++|...|++++..-- +....+...+. +-..++ +......+.
T Consensus 253 SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~r 332 (835)
T KOG2047|consen 253 SLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNR 332 (835)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhc
Confidence 889999999999999999999887532 22222221111 111111 000000000
Q ss_pred --------HHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHh-CCCC-----HHHHHHHHHHHHHcCChHHHHHHHHH
Q 002273 283 --------LFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYY-NWHY-----ADAMYNLGVAYGEMLKFDMAIVFYEL 348 (944)
Q Consensus 283 --------~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~-~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~ 348 (944)
..+.+..+.....-..-...++..+-+..|.++++. +|.. ...|..+|..|...|+.+.|...|++
T Consensus 333 r~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifek 412 (835)
T KOG2047|consen 333 RPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEK 412 (835)
T ss_pred cchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 001111111111223334456667777777776653 4432 35677777777777777777777777
Q ss_pred HHhhCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC------------------CHHHHHHHHHHHHHcCC
Q 002273 349 AFHFNPH----CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN------------------FSQSLNNLGVVYTVQGK 406 (944)
Q Consensus 349 al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------------~~~~~~~la~~~~~~g~ 406 (944)
+.+..-. -..+|...|..-....+++.|.++.++|...-.. +..+|..++......|-
T Consensus 413 a~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gt 492 (835)
T KOG2047|consen 413 ATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGT 492 (835)
T ss_pred hhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 7766422 2566777777777777777777777776644111 12356666666666777
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 002273 407 MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDP 456 (944)
Q Consensus 407 ~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P 456 (944)
++.....|++.+++.--.+....+.|..+....-+++|.+.|++.+.+.+
T Consensus 493 festk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk 542 (835)
T KOG2047|consen 493 FESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFK 542 (835)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCC
Confidence 77777777777776666666667777777666667777777777666643
No 124
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.39 E-value=9.1e-11 Score=114.45 Aligned_cols=171 Identities=17% Similarity=0.136 Sum_probs=137.7
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q 002273 302 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 381 (944)
Q Consensus 302 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 381 (944)
.++...|..++++.....|.+..+....|..+...|++++|+++|+..++-+|.+..++...-.+...+|+..+|++.+.
T Consensus 65 ~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln 144 (289)
T KOG3060|consen 65 TGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELN 144 (289)
T ss_pred hcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 45557777777777777788888888888888888888888888888888888888888777777778888888888888
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCC
Q 002273 382 MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG---SISLAIDAYEQCLKIDPDS 458 (944)
Q Consensus 382 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g---~~~eA~~~~~~al~l~P~~ 458 (944)
..++..+.+.++|..++.+|...|+|++|.-++++.+-..|.++-.+..+|.+++-+| +++-|.++|.++++++|.+
T Consensus 145 ~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~ 224 (289)
T KOG3060|consen 145 EYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKN 224 (289)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHh
Confidence 8888888888888888888888888888888888888888888888888888877766 5677888888888888877
Q ss_pred hhhhhhHHHHhhhc
Q 002273 459 RNAGQNRLLAMNYI 472 (944)
Q Consensus 459 ~~a~~~~~~~~~~~ 472 (944)
..+.....++.+.+
T Consensus 225 ~ral~GI~lc~~~l 238 (289)
T KOG3060|consen 225 LRALFGIYLCGSAL 238 (289)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777666655554
No 125
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.39 E-value=1.1e-11 Score=139.62 Aligned_cols=176 Identities=18% Similarity=0.173 Sum_probs=133.9
Q ss_pred CCCCCCCeEEEecCC--CCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCc
Q 002273 676 PALTNGFITFGSFNN--LAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLN 753 (944)
Q Consensus 676 ~~~~~~~~~f~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~ 753 (944)
.++.++..+++++++ ..|....++++|.++... ++.+|++.|.+. ....+++.+.+.|+ .++|.|.|...
T Consensus 191 ~~~~~~~~~il~~g~l~~~K~~~~li~a~~~l~~~-~~~~l~i~G~g~----~~~~~~~~~~~~~~-~~~v~~~g~~~-- 262 (371)
T cd04962 191 LGAPEGEKVLIHISNFRPVKRIDDVIRIFAKVRKE-VPARLLLVGDGP----ERSPAERLARELGL-QDDVLFLGKQD-- 262 (371)
T ss_pred cCCCCCCeEEEEecccccccCHHHHHHHHHHHHhc-CCceEEEEcCCc----CHHHHHHHHHHcCC-CceEEEecCcc--
Confidence 345556666777775 489999999999998766 568999988662 34567777888898 48999999753
Q ss_pred HHHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCccccc--CCHHHHHHHHHHHhc
Q 002273 754 HDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQLAS 830 (944)
Q Consensus 754 ~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~--~~~~~y~~~a~~l~~ 830 (944)
+....|..+|+++-|..+ +.|.+.+|||++|+|||+........ ++.. |-..+++ .|.+++++....+.+
T Consensus 263 -~~~~~~~~~d~~v~ps~~E~~~~~~~EAma~g~PvI~s~~~~~~e-----~i~~-~~~G~~~~~~~~~~l~~~i~~l~~ 335 (371)
T cd04962 263 -HVEELLSIADLFLLPSEKESFGLAALEAMACGVPVVASNAGGIPE-----VVKH-GETGFLVDVGDVEAMAEYALSLLE 335 (371)
T ss_pred -cHHHHHHhcCEEEeCCCcCCCccHHHHHHHcCCCEEEeCCCCchh-----hhcC-CCceEEcCCCCHHHHHHHHHHHHh
Confidence 566778889999988865 77999999999999999833221111 1111 2233433 388999999999999
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 002273 831 DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNM 868 (944)
Q Consensus 831 d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 868 (944)
|++.+..+++..++...+. |+++.++..+++.|+++
T Consensus 336 ~~~~~~~~~~~~~~~~~~~--fs~~~~~~~~~~~y~~~ 371 (371)
T cd04962 336 DDELWQEFSRAARNRAAER--FDSERIVPQYEALYRRL 371 (371)
T ss_pred CHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHhC
Confidence 9999999999998875433 99999999999999863
No 126
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=99.38 E-value=1.4e-11 Score=140.30 Aligned_cols=206 Identities=17% Similarity=0.169 Sum_probs=151.6
Q ss_pred ccceEEcCCCcc--ccCCCCCCCCCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCC--ceEEEecCCCCC
Q 002273 650 VEELIRLPECFL--CYTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPN--SRLVVKCKPFCC 723 (944)
Q Consensus 650 ~e~~~~lp~~~~--~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~--~~l~~~~~~~~~ 723 (944)
.+++..+|+..- .|.|.+ ....+...+++++.++|+++++. .|..+.+++++.++++..|+ .+|+++|++...
T Consensus 186 ~~ki~vi~ngvd~~~~~~~~-~~~~~~~~~~~~~~~~i~~~G~l~~~K~~~~li~a~~~l~~~~~~~~~~l~ivG~~~~~ 264 (405)
T TIGR03449 186 PDRIDVVAPGADLERFRPGD-RATERARLGLPLDTKVVAFVGRIQPLKAPDVLLRAVAELLDRDPDRNLRVIVVGGPSGS 264 (405)
T ss_pred hhhEEEECCCcCHHHcCCCc-HHHHHHhcCCCCCCcEEEEecCCCcccCHHHHHHHHHHHHhhCCCcceEEEEEeCCCCC
Confidence 366777776421 122221 11112223455566677777766 78899999999999999888 788888754322
Q ss_pred H-HHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCC-CCCcccHHHhhhcCCcEEecCCCcccccch
Q 002273 724 D-SVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFP-YAGTTTTCESLYMGVPCVTMAGSVHAHNVG 801 (944)
Q Consensus 724 ~-~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~-~~~~~t~~eal~~gvPvvt~~g~~~~~r~~ 801 (944)
. ...+.+++..+++|+ .++|.|+|.++ ..+....|+.+|+++-|.- .+.|++.+|||++|+|||+ +++|
T Consensus 265 g~~~~~~l~~~~~~~~l-~~~v~~~g~~~-~~~~~~~l~~ad~~v~ps~~E~~g~~~lEAma~G~Pvi~-------~~~~ 335 (405)
T TIGR03449 265 GLATPDALIELAAELGI-ADRVRFLPPRP-PEELVHVYRAADVVAVPSYNESFGLVAMEAQACGTPVVA-------ARVG 335 (405)
T ss_pred cchHHHHHHHHHHHcCC-CceEEECCCCC-HHHHHHHHHhCCEEEECCCCCCcChHHHHHHHcCCCEEE-------ecCC
Confidence 2 456778888899999 47999999986 6888999999999977664 4779999999999999999 5554
Q ss_pred h--HHHhhcCCccccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 002273 802 V--SLLTKVGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMW 869 (944)
Q Consensus 802 ~--~~l~~~gl~~~v~--~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 869 (944)
+ .++.. |-..+++ .|.+++.+...++.+|++.+..+++..++.. ..|+++.+++.++++|.++.
T Consensus 336 ~~~e~i~~-~~~g~~~~~~d~~~la~~i~~~l~~~~~~~~~~~~~~~~~---~~fsw~~~~~~~~~~y~~~~ 403 (405)
T TIGR03449 336 GLPVAVAD-GETGLLVDGHDPADWADALARLLDDPRTRIRMGAAAVEHA---AGFSWAATADGLLSSYRDAL 403 (405)
T ss_pred CcHhhhcc-CCceEECCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH---HhCCHHHHHHHHHHHHHHHh
Confidence 1 11111 2233443 4999999999999999999999999988764 24999999999999998764
No 127
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.37 E-value=1.1e-11 Score=143.33 Aligned_cols=173 Identities=14% Similarity=0.125 Sum_probs=138.0
Q ss_pred CCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHH
Q 002273 680 NGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 757 (944)
Q Consensus 680 ~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~ 757 (944)
.+.++++.+++. .|..+.+++++..+.+..|+.+|+++|.+...+...+.+++.+++.|+ .++|.|+|. .+..
T Consensus 291 ~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~p~~~l~IvG~g~~~~~~~~e~~~li~~l~l-~~~V~f~G~----~~v~ 365 (475)
T cd03813 291 KEPPVVGLIGRVVPIKDIKTFIRAAAIVRKKIPDAEGWVIGPTDEDPEYAEECRELVESLGL-EDNVKFTGF----QNVK 365 (475)
T ss_pred CCCcEEEEEeccccccCHHHHHHHHHHHHHhCCCeEEEEECCCCcChHHHHHHHHHHHHhCC-CCeEEEcCC----ccHH
Confidence 344567777765 788899999999999999999999998764455677888888999999 599999993 4566
Q ss_pred HhcccccEEecCCC-CCCcccHHHhhhcCCcEEecCCCcccccchh--HHHhh-----cCCcccc--cCCHHHHHHHHHH
Q 002273 758 QAYSLMDISLDTFP-YAGTTTTCESLYMGVPCVTMAGSVHAHNVGV--SLLTK-----VGLKHLI--AKNEDEYVQLALQ 827 (944)
Q Consensus 758 ~~~~~~Di~Ld~~~-~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~--~~l~~-----~gl~~~v--~~~~~~y~~~a~~ 827 (944)
..|..+||++-|.- .+.+++.+|||++|+|||+ +.+|+ .++.. .|-..++ ..|++++.+...+
T Consensus 366 ~~l~~aDv~vlpS~~Eg~p~~vlEAma~G~PVVa-------td~g~~~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ 438 (475)
T cd03813 366 EYLPKLDVLVLTSISEGQPLVILEAMAAGIPVVA-------TDVGSCRELIEGADDEALGPAGEVVPPADPEALARAILR 438 (475)
T ss_pred HHHHhCCEEEeCchhhcCChHHHHHHHcCCCEEE-------CCCCChHHHhcCCcccccCCceEEECCCCHHHHHHHHHH
Confidence 77788999977764 4789999999999999999 55542 12222 1223333 3589999999999
Q ss_pred HhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 002273 828 LASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 866 (944)
Q Consensus 828 l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 866 (944)
|.+|++.+.++++..++++.+ .|+++.++..++++|+
T Consensus 439 ll~~~~~~~~~~~~a~~~v~~--~~s~~~~~~~y~~lY~ 475 (475)
T cd03813 439 LLKDPELRRAMGEAGRKRVER--YYTLERMIDSYRRLYL 475 (475)
T ss_pred HhcCHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHhC
Confidence 999999999999999988764 4899999999999884
No 128
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.37 E-value=1e-11 Score=140.68 Aligned_cols=202 Identities=17% Similarity=0.150 Sum_probs=137.2
Q ss_pred ccccceEEcCCCccc--cCCCCCCCC-CCCCCCCCCCCeEEEecCC---CCcCCHHHHHHHHHHHhHcCCceEEEecCCC
Q 002273 648 KHVEELIRLPECFLC--YTPSPEAGP-VCPTPALTNGFITFGSFNN---LAKITPKVLQVWARILCAVPNSRLVVKCKPF 721 (944)
Q Consensus 648 ~~~e~~~~lp~~~~~--~~~~~~~~~-~~~~~~~~~~~~~f~~~~~---~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~ 721 (944)
.|.+++..+|+..-. |.|.+.... ......+..+..+++..++ ..|..+.+++++.++.+..|+.+|+++|++.
T Consensus 174 ~~~~ki~vI~ngvd~~~f~~~~~~~~~~~~~~~~~~~~~~i~~vgR~l~~~Kg~~~ll~a~~~l~~~~~~~~lvivG~~~ 253 (396)
T cd03818 174 ELRSRISVIHDGIDTDRLRPDPQARLRLPNGRVLTPGDEVITFVARNLEPYRGFHVFMRALPRLLRARPDARVVIVGGDG 253 (396)
T ss_pred hhccceEEeCCCccccccCCCchhhhcccccccCCCCCeEEEEECCCcccccCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 345788888864211 222211110 1111123344444554443 5899999999999999999999999998531
Q ss_pred C--------CHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCC-CCCCcccHHHhhhcCCcEEecC
Q 002273 722 C--------CDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTF-PYAGTTTTCESLYMGVPCVTMA 792 (944)
Q Consensus 722 ~--------~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~-~~~~~~t~~eal~~gvPvvt~~ 792 (944)
. .+..++.+.+.+... .+.++|.|+|.++ ..+....|+.+|+++-|. |++.|.+.+|||+||+|||+
T Consensus 254 ~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~V~f~G~v~-~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIa-- 329 (396)
T cd03818 254 VSYGAPPPDGESWKQHMLDELGGR-LDLSRVHFLGRVP-YDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVG-- 329 (396)
T ss_pred cccCCCCCCcccHHHHHHHHhhcc-cCcceEEEeCCCC-HHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEE--
Confidence 0 111333433333221 1358999999987 688999999999997655 67888999999999999999
Q ss_pred CCcccccchh--HHHhhcCCccccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHH
Q 002273 793 GSVHAHNVGV--SLLTKVGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGL 861 (944)
Q Consensus 793 g~~~~~r~~~--~~l~~~gl~~~v~--~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 861 (944)
+++++ .++.. |...+++ .|++++.+...++.+|++.+.+++++.|+.... .|+++.++..+
T Consensus 330 -----s~~~g~~e~i~~-~~~G~lv~~~d~~~la~~i~~ll~~~~~~~~l~~~ar~~~~~--~fs~~~~~~~~ 394 (396)
T cd03818 330 -----SDTAPVREVITD-GENGLLVDFFDPDALAAAVIELLDDPARRARLRRAARRTALR--YDLLSVCLPRQ 394 (396)
T ss_pred -----cCCCCchhhccc-CCceEEcCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH--hccHHHHHHHH
Confidence 55541 11111 3334443 589999999999999999999999999998764 48888777654
No 129
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=99.36 E-value=2.5e-11 Score=137.68 Aligned_cols=173 Identities=21% Similarity=0.171 Sum_probs=133.7
Q ss_pred CCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHc---CCceEEEecCCCC----CHHHHHHHHHHHHH-cCCCCCcEEEc
Q 002273 678 LTNGFITFGSFNNL--AKITPKVLQVWARILCAV---PNSRLVVKCKPFC----CDSVRHRFLSTLEQ-LGLESLRVDLL 747 (944)
Q Consensus 678 ~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~---p~~~l~~~~~~~~----~~~~~~~~~~~~~~-~gi~~~rv~~~ 747 (944)
..++.++|+++++. .|..+.+++++.++.... |+.+|+++|++.. .....+.+.+.+++ .|+ .++|.|.
T Consensus 207 ~~~~~~~i~~~grl~~~Kg~~~ll~a~~~l~~~~~~~~~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l-~~~V~f~ 285 (392)
T cd03805 207 PKSGKKTFLSINRFERKKNIALAIEAFAILKDKLAEFKNVRLVIAGGYDPRVAENVEYLEELQRLAEELLLL-EDQVIFL 285 (392)
T ss_pred cCCCceEEEEEeeecccCChHHHHHHHHHHHhhcccccCeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCC-CceEEEe
Confidence 44566778877754 889999999999999887 8999999986522 11234677788888 899 4999999
Q ss_pred cCccCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhH--HHhhcCCcccccCCHHHHHHH
Q 002273 748 PLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVS--LLTKVGLKHLIAKNEDEYVQL 824 (944)
Q Consensus 748 ~~~~~~~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~--~l~~~gl~~~v~~~~~~y~~~ 824 (944)
|.++ ..+....|..+|++|-|..+ +.|.+.+|||++|+|||+ +++++. ++..-+..-++..|++++.+.
T Consensus 286 g~~~-~~~~~~~l~~ad~~l~~s~~E~~g~~~lEAma~G~PvI~-------s~~~~~~e~i~~~~~g~~~~~~~~~~a~~ 357 (392)
T cd03805 286 PSIS-DSQKELLLSSARALLYTPSNEHFGIVPLEAMYAGKPVIA-------CNSGGPLETVVDGETGFLCEPTPEEFAEA 357 (392)
T ss_pred CCCC-hHHHHHHHhhCeEEEECCCcCCCCchHHHHHHcCCCEEE-------ECCCCcHHHhccCCceEEeCCCHHHHHHH
Confidence 9987 57778889999999876655 668999999999999999 444421 222211122445689999999
Q ss_pred HHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHH
Q 002273 825 ALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGL 861 (944)
Q Consensus 825 a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 861 (944)
...+..|++.+.++++..++.+.+. |+++.+++.|
T Consensus 358 i~~l~~~~~~~~~~~~~a~~~~~~~--~s~~~~~~~~ 392 (392)
T cd03805 358 MLKLANDPDLADRMGAAGRKRVKEK--FSTEAFAERL 392 (392)
T ss_pred HHHHHhChHHHHHHHHHHHHHHHHh--cCHHHHhhhC
Confidence 9999999999999999998887544 8888887653
No 130
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.36 E-value=4.6e-11 Score=132.48 Aligned_cols=226 Identities=18% Similarity=0.135 Sum_probs=190.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 002273 189 HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 268 (944)
Q Consensus 189 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 268 (944)
........++.++...|-...|+..|++. ..|.....||...|+..+|.....+-++ .|+++..|..++.+
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDV 466 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhh
Confidence 34556678899999999999999999984 6677888899999999999999888888 56666666666555
Q ss_pred HHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 002273 269 LTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 348 (944)
Q Consensus 269 l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 348 (944)
..+.. -|++|.++.+.. +..+...+|......++|+++.++++.
T Consensus 467 ~~d~s------------------------------~yEkawElsn~~------sarA~r~~~~~~~~~~~fs~~~~hle~ 510 (777)
T KOG1128|consen 467 LHDPS------------------------------LYEKAWELSNYI------SARAQRSLALLILSNKDFSEADKHLER 510 (777)
T ss_pred ccChH------------------------------HHHHHHHHhhhh------hHHHHHhhccccccchhHHHHHHHHHH
Confidence 43322 124444444332 345677777777888999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 002273 349 AFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 428 (944)
Q Consensus 349 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~ 428 (944)
.++++|-....|+.+|.+..+.++++.|.++|..++.++|++.++|++++..|.+.++-.+|...++++++.+-++..+|
T Consensus 511 sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iW 590 (777)
T KOG1128|consen 511 SLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIW 590 (777)
T ss_pred HhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998889999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 002273 429 NNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 459 (944)
Q Consensus 429 ~~la~~~~~~g~~~eA~~~~~~al~l~P~~~ 459 (944)
.|...+..+.|.+++|++.|.+.+.+.-+..
T Consensus 591 ENymlvsvdvge~eda~~A~~rll~~~~~~~ 621 (777)
T KOG1128|consen 591 ENYMLVSVDVGEFEDAIKAYHRLLDLRKKYK 621 (777)
T ss_pred echhhhhhhcccHHHHHHHHHHHHHhhhhcc
Confidence 9999999999999999999999988755433
No 131
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=99.36 E-value=4e-11 Score=133.09 Aligned_cols=317 Identities=15% Similarity=0.087 Sum_probs=187.3
Q ss_pred EEEeecCCCccCcHHHHHHhhhhhccCCcEEEEEEeccccCChhhHHHHHH--Hh-hhCCceEeccCCCHHHHHHHhHhC
Q 002273 512 VIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREK--VM-KKGGIWRDIYGIDEKKVAAMVRED 588 (944)
Q Consensus 512 riGy~S~d~~~h~v~~~~~~~l~~~d~~~fev~~y~~~~~~d~~t~~~~~~--~~-~~~~~~~~~~~~~~~~~a~~i~~d 588 (944)
||.++++.+...-+...+..+...+....++|.++................ .. ................+.+.|+..
T Consensus 1 kIl~~~~~~~~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (353)
T cd03811 1 KILFVIPSLGGGGAERVLLNLANGLDKRGYDVTLVVLRDEGDYLELLPSNVKLIPVRVLKLKSLRDLLAILRLRRLLRKE 80 (353)
T ss_pred CeEEEeecccCCCcchhHHHHHHHHHhcCceEEEEEcCCCCccccccccchhhhceeeeecccccchhHHHHHHHHHHhc
Confidence 467777777554455555667777767788898887654332211100000 00 000000001112246788899999
Q ss_pred CccEEEecCCCCCCCchhhhccC-CcceeeecccCCCCCCC-------------CCccEEEecCCCCCccccccc---cc
Q 002273 589 KIDILVELTGHTANNKLGMMACQ-PAPVQVTWIGYPNTTGL-------------PTIDYRITDSLADPPETKQKH---VE 651 (944)
Q Consensus 589 ~idilvdl~g~t~~~~~~~~a~r-~ApvQ~~~~G~p~t~g~-------------~~~Dy~i~d~~~~p~~~~~~~---~e 651 (944)
++||++-... ....-+..+..+ -.|+-+..-+.+..... ...|.+++-.-..-......| .+
T Consensus 81 ~~dii~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~ 159 (353)
T cd03811 81 KPDVVISHLT-TTPNVLALLAARLGTKLIVWEHNSLSLELKRKLRLLLLIRKLYRRADKIVAVSEGVKEDLLKLLGIPPD 159 (353)
T ss_pred CCCEEEEcCc-cchhHHHHHHhhcCCceEEEEcCcchhhhccchhHHHHHHhhccccceEEEeccchhhhHHHhhcCCcc
Confidence 9999987665 222223333322 13444443333322211 445666543221111222333 36
Q ss_pred ceEEcCCCccccCCCCCCCCCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHH
Q 002273 652 ELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHR 729 (944)
Q Consensus 652 ~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~ 729 (944)
++..+|+.. ..................++.++|+++++. .|....++++|..+....|+.+|++.|.+ .....
T Consensus 160 ~~~vi~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~~i~~~~~l~~~~~~~~l~i~G~~----~~~~~ 234 (353)
T cd03811 160 KIEVIYNPI-DIEEIRALAEEPLELGIPPDGPVILAVGRLSPQKGFDTLIRAFALLRKEGPDARLVILGDG----PLREE 234 (353)
T ss_pred ccEEecCCc-ChhhcCcccchhhhcCCCCCceEEEEEecchhhcChHHHHHHHHHhhhcCCCceEEEEcCC----ccHHH
Confidence 777777542 111110000000012345666778877765 78999999999999988899999999865 34456
Q ss_pred HHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchh--HHHh
Q 002273 730 FLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGV--SLLT 806 (944)
Q Consensus 730 ~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~--~~l~ 806 (944)
+.+.....|+ .++|.|.|... +....+..+|+++-|..+ +.|++.+|||++|+|||+ +++++ .++.
T Consensus 235 ~~~~~~~~~~-~~~v~~~g~~~---~~~~~~~~~d~~i~ps~~e~~~~~~~Ea~~~G~PvI~-------~~~~~~~e~i~ 303 (353)
T cd03811 235 LEALAKELGL-ADRVHFLGFQS---NPYPYLKAADLFVLSSRYEGFPNVLLEAMALGTPVVA-------TDCPGPREILE 303 (353)
T ss_pred HHHHHHhcCC-CccEEEecccC---CHHHHHHhCCEEEeCcccCCCCcHHHHHHHhCCCEEE-------cCCCChHHHhc
Confidence 6677788898 58999999854 466788889999988876 669999999999999999 44441 1111
Q ss_pred hcCCccccc--CCHHHH---HHHHHHHhcCHHHHHHHHHHHHHHh
Q 002273 807 KVGLKHLIA--KNEDEY---VQLALQLASDVTALANLRMSLRDLM 846 (944)
Q Consensus 807 ~~gl~~~v~--~~~~~y---~~~a~~l~~d~~~~~~~r~~~~~~~ 846 (944)
. |-..++. .+++++ +.....+..|++.+.+++...++..
T Consensus 304 ~-~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 347 (353)
T cd03811 304 D-GENGLLVPVGDEAALAAAALALLDLLLDPELRERLAAAARERV 347 (353)
T ss_pred C-CCceEEECCCCHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence 1 2223333 456666 7888888889888888887555544
No 132
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.35 E-value=2.1e-11 Score=115.24 Aligned_cols=119 Identities=14% Similarity=0.147 Sum_probs=103.0
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002273 344 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 423 (944)
Q Consensus 344 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 423 (944)
+.|++++..+|++..+.+.+|..+...|++++|+..++++++.+|.++.++..+|.++...|++++|+.+++++++.+|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45778888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhh
Q 002273 424 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 462 (944)
Q Consensus 424 ~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~ 462 (944)
++..++.+|.++...|++++|+..|+++++++|++....
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 888888899999999999999999999999888876543
No 133
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=99.35 E-value=1e-10 Score=130.73 Aligned_cols=327 Identities=16% Similarity=0.114 Sum_probs=195.6
Q ss_pred EEEeecCCCccCcHHHHHHhhhhhccCCcEEEEEEeccccCChhh-HHHHHHHhhhCCceEeccCC-CHHHHHHHhHhCC
Q 002273 512 VIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKT-IRFREKVMKKGGIWRDIYGI-DEKKVAAMVREDK 589 (944)
Q Consensus 512 riGy~S~d~~~h~v~~~~~~~l~~~d~~~fev~~y~~~~~~d~~t-~~~~~~~~~~~~~~~~~~~~-~~~~~a~~i~~d~ 589 (944)
+|.+++..|-.- ...++......+.+.+++|.+++.....+... ...........-.......+ ....+.+.++..+
T Consensus 1 ki~~~~~~~~~~-~~~~~~~~~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (355)
T cd03799 1 KIAYLVKEFPRL-SETFILREILALEAAGHEVEIFSLRPPEDTLVHPEDRAELARTRYLARSLALLAQALVLARELRRLG 79 (355)
T ss_pred CEEEECCCCCCc-chHHHHHHHHHHHhCCCeEEEEEecCcccccccccccccccchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 467788776332 34456666677677788898887654322211 00000000000000000111 1235667778889
Q ss_pred ccEEEecCCCCCCCchhhhccCC--cceeeecccCCCCC---------CCCCccEEEecCCCCCccccc---ccccceEE
Q 002273 590 IDILVELTGHTANNKLGMMACQP--APVQVTWIGYPNTT---------GLPTIDYRITDSLADPPETKQ---KHVEELIR 655 (944)
Q Consensus 590 idilvdl~g~t~~~~~~~~a~r~--ApvQ~~~~G~p~t~---------g~~~~Dy~i~d~~~~p~~~~~---~~~e~~~~ 655 (944)
+||+.--.++. ......+..+. -|+-++..|+.... .+...|++++..-..-..... ...+++..
T Consensus 80 ~Dii~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~s~~~~~~l~~~~~~~~~~~~v 158 (355)
T cd03799 80 IDHIHAHFGTT-PATVAMLASRLGGIPYSFTAHGKDIFRSPDAIDLDEKLARADFVVAISEYNRQQLIRLLGCDPDKIHV 158 (355)
T ss_pred CCEEEECCCCc-hHHHHHHHHHhcCCCEEEEEecccccccCchHHHHHHHhhCCEEEECCHHHHHHHHHhcCCCcccEEE
Confidence 99987543332 12223333333 34444444433221 133467766532111111122 23466677
Q ss_pred cCCCccccCCCCCCCCCCCCCCCCCCCeEEEecC--CCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHH
Q 002273 656 LPECFLCYTPSPEAGPVCPTPALTNGFITFGSFN--NLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLST 733 (944)
Q Consensus 656 lp~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~--~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~ 733 (944)
+|+.. ..... .+. + ....++.+++++++ ...|..+.+++++.++....|+.+|.+.|.+ .....+.+.
T Consensus 159 i~~~~-d~~~~--~~~--~-~~~~~~~~~i~~~g~~~~~k~~~~l~~~~~~l~~~~~~~~l~i~G~~----~~~~~~~~~ 228 (355)
T cd03799 159 VHCGV-DLERF--PPR--P-PPPPGEPLRILSVGRLVEKKGLDYLLEALALLKDRGIDFRLDIVGDG----PLRDELEAL 228 (355)
T ss_pred EeCCc-CHHHc--CCc--c-ccccCCCeEEEEEeeeccccCHHHHHHHHHHHhhcCCCeEEEEEECC----ccHHHHHHH
Confidence 77532 11100 000 0 12223344455544 3589999999999998888899999998865 345567777
Q ss_pred HHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCC-------CCCcccHHHhhhcCCcEEecCCCcccccchhHHHh
Q 002273 734 LEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFP-------YAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLT 806 (944)
Q Consensus 734 ~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~-------~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~ 806 (944)
+++.|+ .++|.|.|.++ .++....|..+||+|-|.. .+.|++.+|||++|+|||+........ ++.
T Consensus 229 ~~~~~~-~~~v~~~g~~~-~~~l~~~~~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~-----~i~ 301 (355)
T cd03799 229 IAELGL-EDRVTLLGAKS-QEEVRELLRAADLFVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSGIPE-----LVE 301 (355)
T ss_pred HHHcCC-CCeEEECCcCC-hHHHHHHHHhCCEEEecceecCCCCccCccHHHHHHHHcCCCEEecCCCCcch-----hhh
Confidence 788888 58899999987 6899999999999999886 467899999999999999843222111 222
Q ss_pred hcCCccccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHH
Q 002273 807 KVGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALG 860 (944)
Q Consensus 807 ~~gl~~~v~--~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 860 (944)
. |-..++. .|.+++++....+..|++.+..+++..++.+.+. |+++..++.
T Consensus 302 ~-~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~a~~~~~~~--~s~~~~~~~ 354 (355)
T cd03799 302 D-GETGLLVPPGDPEALADAIERLLDDPELRREMGEAGRARVEEE--FDIRKQAAR 354 (355)
T ss_pred C-CCceEEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh--cCHHHHhhc
Confidence 2 2223333 3899999999999999999999999998887644 788777654
No 134
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=99.35 E-value=5.8e-11 Score=132.89 Aligned_cols=314 Identities=15% Similarity=0.133 Sum_probs=183.9
Q ss_pred EEEeecCCCccCcHHHHHHhhhhhccCCcEEEEEEeccccCChhhHHHHHHHhhhCCceEeccCC--C----HHHHHHHh
Q 002273 512 VIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGI--D----EKKVAAMV 585 (944)
Q Consensus 512 riGy~S~d~~~h~v~~~~~~~l~~~d~~~fev~~y~~~~~~d~~t~~~~~~~~~~~~~~~~~~~~--~----~~~~a~~i 585 (944)
||.++.+++..=-+..++..+.+.+...+++|++++...........+.. ....+..+... . ...+.+.+
T Consensus 1 kIl~~~~~~~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (358)
T cd03812 1 KILHIVGTMNRGGIETFIMNYYRNLDRSKIQFDFLVTSKEEGDYDDEIEK----LGGKIYYIPARKKNPLKYFKKLYKLI 76 (358)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHhcCccceEEEEEEeCCCCcchHHHHHH----cCCeEEEecCCCccHHHHHHHHHHHH
Confidence 35667777633334556666777777788999988765433222222221 11222222111 1 23566677
Q ss_pred HhCCccEEEecCCCCCCCchhhhc-cCCcceeeec-ccCCCCCCCCCcc----------EEEecCCCCCccc-ccc----
Q 002273 586 REDKIDILVELTGHTANNKLGMMA-CQPAPVQVTW-IGYPNTTGLPTID----------YRITDSLADPPET-KQK---- 648 (944)
Q Consensus 586 ~~d~idilvdl~g~t~~~~~~~~a-~r~ApvQ~~~-~G~p~t~g~~~~D----------y~i~d~~~~p~~~-~~~---- 648 (944)
+..++||++-.+.++. .-..+++ ....|+-+.+ .+...+....... +..+|.++.+... ...
T Consensus 77 ~~~~~Dvv~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~~ 155 (358)
T cd03812 77 KKNKYDIVHVHGSSAS-GFILLAAKKAGVKVRIAHSHNTSDSHDKKKKILKYKVLRKLINRLATDYLACSEEAGKWLFGK 155 (358)
T ss_pred hcCCCCEEEEeCcchh-HHHHHHHhhCCCCeEEEEeccccccccccchhhHHHHHHHHHHhcCCEEEEcCHHHHHHHHhC
Confidence 8899999976444321 1111222 2344544332 2211111110000 1112332222221 111
Q ss_pred -cccceEEcCCCccc--cCCCCCCCCCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCceEEEecCCCCC
Q 002273 649 -HVEELIRLPECFLC--YTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCC 723 (944)
Q Consensus 649 -~~e~~~~lp~~~~~--~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~ 723 (944)
..+++.-+|+..-. |.+.+.............+.++++.+++. .|..+.+++++..+....|+.+++++|.+
T Consensus 156 ~~~~~~~vi~ngvd~~~~~~~~~~~~~~~~~~~~~~~~~i~~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g--- 232 (358)
T cd03812 156 VKNKKFKVIPNGIDLEKFIFNEEIRKKRRELGILEDKFVIGHVGRFSEQKNHEFLIEIFAELLKKNPNAKLLLVGDG--- 232 (358)
T ss_pred CCcccEEEEeccCcHHHcCCCchhhhHHHHcCCCCCCEEEEEEeccccccChHHHHHHHHHHHHhCCCeEEEEEeCC---
Confidence 23566666653110 11111110111112345566777777754 89999999999999999999999999865
Q ss_pred HHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchh
Q 002273 724 DSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGV 802 (944)
Q Consensus 724 ~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~ 802 (944)
.....+++.+++.|+ .++|.|.|. ..+....|..+|+++-|.-+ +.|.+.+|||++|+|||+ ++++.
T Consensus 233 -~~~~~~~~~~~~~~~-~~~v~~~g~---~~~~~~~~~~adi~v~ps~~E~~~~~~lEAma~G~PvI~-------s~~~~ 300 (358)
T cd03812 233 -ELEEEIKKKVKELGL-EDKVIFLGV---RNDVPELLQAMDVFLFPSLYEGLPLVLIEAQASGLPCIL-------SDTIT 300 (358)
T ss_pred -chHHHHHHHHHhcCC-CCcEEEecc---cCCHHHHHHhcCEEEecccccCCCHHHHHHHHhCCCEEE-------EcCCc
Confidence 345677777888899 589999997 34667788999999988755 779999999999999998 44441
Q ss_pred H--HHhhcCCccccc-CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Q 002273 803 S--LLTKVGLKHLIA-KNEDEYVQLALQLASDVTALANLRMSLRDLM 846 (944)
Q Consensus 803 ~--~l~~~gl~~~v~-~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~ 846 (944)
. ++.. +..-++. .+++++.+...+|.+|++.++.++...+...
T Consensus 301 ~~~~i~~-~~~~~~~~~~~~~~a~~i~~l~~~~~~~~~~~~~~~~~~ 346 (358)
T cd03812 301 KEVDLTD-LVKFLSLDESPEIWAEEILKLKSEDRRERSSESIKKKGL 346 (358)
T ss_pred hhhhhcc-CccEEeCCCCHHHHHHHHHHHHhCcchhhhhhhhhhccc
Confidence 1 1222 2233333 4569999999999999988877766655443
No 135
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=99.34 E-value=1.1e-10 Score=130.96 Aligned_cols=174 Identities=16% Similarity=0.114 Sum_probs=134.6
Q ss_pred CCCCCCeEEEecCC--CCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcH
Q 002273 677 ALTNGFITFGSFNN--LAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNH 754 (944)
Q Consensus 677 ~~~~~~~~f~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~ 754 (944)
..+++.++|+++++ ..|..+.+++++.++.+..|+.+|+++|.+. ......+.....+.|+ .++|.|.|.++ ..
T Consensus 198 ~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~~--~~~~~~~~~~~~~~~~-~~~v~~~g~~~-~~ 273 (375)
T cd03821 198 PILPDKRIILFLGRLHPKKGLDLLIEAFAKLAERFPDWHLVIAGPDE--GGYRAELKQIAAALGL-EDRVTFTGMLY-GE 273 (375)
T ss_pred cCCCCCcEEEEEeCcchhcCHHHHHHHHHHhhhhcCCeEEEEECCCC--cchHHHHHHHHHhcCc-cceEEEcCCCC-hH
Confidence 45566667777774 4889999999999999999999999998642 2233444444578898 58999999987 57
Q ss_pred HHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhcCHH
Q 002273 755 DHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVT 833 (944)
Q Consensus 755 ~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~l~~d~~ 833 (944)
+....|..+|+++-|..+ +.|++.+|||+||+|||+-.+..+.. ++.. +..-++..+.+++++...++.+|++
T Consensus 274 ~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~ 347 (375)
T cd03821 274 DKAAALADADLFVLPSHSENFGIVVAEALACGTPVVTTDKVPWQE-----LIEY-GCGWVVDDDVDALAAALRRALELPQ 347 (375)
T ss_pred HHHHHHhhCCEEEeccccCCCCcHHHHHHhcCCCEEEcCCCCHHH-----Hhhc-CceEEeCCChHHHHHHHHHHHhCHH
Confidence 889999999999887764 77999999999999999944332222 2222 3334556677999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 002273 834 ALANLRMSLRDLMSKSPVCDGQNFALGLE 862 (944)
Q Consensus 834 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~e 862 (944)
.++.+++..++.+.. .|+++.+++.++
T Consensus 348 ~~~~~~~~~~~~~~~--~~s~~~~~~~~~ 374 (375)
T cd03821 348 RLKAMGENGRALVEE--RFSWTAIAQQLL 374 (375)
T ss_pred HHHHHHHHHHHHHHH--hcCHHHHHHHhh
Confidence 999999999888654 489999888775
No 136
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=99.34 E-value=1.6e-11 Score=139.31 Aligned_cols=169 Identities=17% Similarity=0.109 Sum_probs=126.2
Q ss_pred CCCeEEEecC--CCCcCCHHHHHHHHHHHhHcCC-----ceEEEecCCCC--CHHHHHHHHHHHHHcCCCCCcEEEccCc
Q 002273 680 NGFITFGSFN--NLAKITPKVLQVWARILCAVPN-----SRLVVKCKPFC--CDSVRHRFLSTLEQLGLESLRVDLLPLI 750 (944)
Q Consensus 680 ~~~~~f~~~~--~~~K~~~~~~~~~~~il~~~p~-----~~l~~~~~~~~--~~~~~~~~~~~~~~~gi~~~rv~~~~~~ 750 (944)
++..+|.+++ .+.|.....+++|..+.+..|+ .+|+++|++.. +....+.|++.++++|+ .++|.|+|.+
T Consensus 235 ~~~~~il~vgr~~~~K~~~~li~A~~~l~~~~~~~~~~~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l-~~~V~f~g~v 313 (419)
T cd03806 235 TRENQILSIAQFRPEKNHPLQLRAFAKLLKRLPEEIKEKIKLVLIGSCRNEDDEKRVEDLKLLAKELGL-EDKVEFVVNA 313 (419)
T ss_pred cCCcEEEEEEeecCCCCHHHHHHHHHHHHHhCcccccCceEEEEEcCCCCcccHHHHHHHHHHHHHhCC-CCeEEEecCC
Confidence 3445666666 4589999999999999988875 89999986532 22456778888899999 5899999998
Q ss_pred cCcHHHHHhcccccEEecCCC-CCCcccHHHhhhcCCcEEecCCCcccccchhHHHhh-----cCCcccccCCHHHHHHH
Q 002273 751 LLNHDHMQAYSLMDISLDTFP-YAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTK-----VGLKHLIAKNEDEYVQL 824 (944)
Q Consensus 751 ~~~~~~~~~~~~~Di~Ld~~~-~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~-----~gl~~~v~~~~~~y~~~ 824 (944)
+ .++....|+.+|++|-|.. .+.|.+.+|||++|+|||+ ++.|+....- -|-..+++.|++++.+.
T Consensus 314 ~-~~~l~~~l~~adv~v~~s~~E~Fgi~~lEAMa~G~pvIa-------~~~ggp~~~iv~~~~~g~~G~l~~d~~~la~a 385 (419)
T cd03806 314 P-FEELLEELSTASIGLHTMWNEHFGIGVVEYMAAGLIPLA-------HASGGPLLDIVVPWDGGPTGFLASTAEEYAEA 385 (419)
T ss_pred C-HHHHHHHHHhCeEEEECCccCCcccHHHHHHHcCCcEEE-------EcCCCCchheeeccCCCCceEEeCCHHHHHHH
Confidence 7 6899999999999988874 4889999999999999998 4433211111 14455667899999999
Q ss_pred HHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHH
Q 002273 825 ALQLASDVTALANLRMSLRDLMSKSPVCDGQNFAL 859 (944)
Q Consensus 825 a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 859 (944)
..++.+|++..+..+.+.+.+.. ..|+.+.|.+
T Consensus 386 i~~ll~~~~~~~~~~~~~~~~~~--~~fs~~~f~~ 418 (419)
T cd03806 386 IEKILSLSEEERLRIRRAARSSV--KRFSDEEFER 418 (419)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHH--HhhCHHHhcc
Confidence 99999976554443343344433 3488887753
No 137
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.34 E-value=1.5e-10 Score=114.48 Aligned_cols=179 Identities=17% Similarity=0.145 Sum_probs=158.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002273 64 FVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKAL 143 (944)
Q Consensus 64 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 143 (944)
...+...+-+....+|++..+ ..++..+...|+-+.+.....++...+|.+...+..+|......|++.+|+..++++.
T Consensus 49 ~~~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~ 127 (257)
T COG5010 49 TQGAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAA 127 (257)
T ss_pred hhHHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHh
Confidence 334666666667788998888 8999999999999999999999888899998888889999999999999999999999
Q ss_pred HcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002273 144 SADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM 223 (944)
Q Consensus 144 ~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 223 (944)
...|++... +..+|.+|.+.|++++|...|.+++++.|+.+.+..++|..|.-.|+++.|..++.++....+.
T Consensus 128 ~l~p~d~~~-------~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a 200 (257)
T COG5010 128 RLAPTDWEA-------WNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA 200 (257)
T ss_pred ccCCCChhh-------hhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC
Confidence 999998775 7778888888899999999999999999999999999999999999999999999999888888
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002273 224 YAEAYCNMGVIYKNRGDLESAIACYER 250 (944)
Q Consensus 224 ~~~~~~~la~~~~~~g~~~~A~~~~~~ 250 (944)
+..+..+++.+....|++++|.....+
T Consensus 201 d~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 201 DSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred chHHHHHHHHHHhhcCChHHHHhhccc
Confidence 899999999999999999999876554
No 138
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=99.33 E-value=3.7e-11 Score=134.50 Aligned_cols=171 Identities=17% Similarity=0.206 Sum_probs=128.8
Q ss_pred CCCCCCeEEEecC--CCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcH
Q 002273 677 ALTNGFITFGSFN--NLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNH 754 (944)
Q Consensus 677 ~~~~~~~~f~~~~--~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~ 754 (944)
+++++.++|..++ ...|..+.+++++.++....|+.+|+++|.+ ..++.+.+.+++.|+ .++|.|.|.. .
T Consensus 183 ~~~~~~~~~l~~g~~~~~kg~~~li~a~~~l~~~~~~~~l~i~G~g----~~~~~~~~~~~~~~~-~~~v~~~g~~---~ 254 (360)
T cd04951 183 GVKNDTFVILAVGRLVEAKDYPNLLKAFAKLLSDYLDIKLLIAGDG----PLRATLERLIKALGL-SNRVKLLGLR---D 254 (360)
T ss_pred CcCCCCEEEEEEeeCchhcCcHHHHHHHHHHHhhCCCeEEEEEcCC----CcHHHHHHHHHhcCC-CCcEEEeccc---c
Confidence 3455555666666 4589999999999999999999999999865 345677788888898 4899999974 4
Q ss_pred HHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhH--HHhhcCCcccccCCHHHHHHHHHHHh-c
Q 002273 755 DHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVS--LLTKVGLKHLIAKNEDEYVQLALQLA-S 830 (944)
Q Consensus 755 ~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~--~l~~~gl~~~v~~~~~~y~~~a~~l~-~ 830 (944)
+....|..+|+++-|..+ +.|.+.+|||++|+|||+ ++++.. ++...|. -+...|++++++....+. .
T Consensus 255 ~~~~~~~~ad~~v~~s~~e~~~~~~~Ea~a~G~PvI~-------~~~~~~~e~i~~~g~-~~~~~~~~~~~~~i~~ll~~ 326 (360)
T cd04951 255 DIAAYYNAADLFVLSSAWEGFGLVVAEAMACELPVVA-------TDAGGVREVVGDSGL-IVPISDPEALANKIDEILKM 326 (360)
T ss_pred cHHHHHHhhceEEecccccCCChHHHHHHHcCCCEEE-------ecCCChhhEecCCce-EeCCCCHHHHHHHHHHHHhC
Confidence 566778899999887765 669999999999999998 444410 1111111 122478999999999998 5
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 002273 831 DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 866 (944)
Q Consensus 831 d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 866 (944)
++..+..++.. +..+. ..|+++.++..+++.|+
T Consensus 327 ~~~~~~~~~~~-~~~~~--~~~s~~~~~~~~~~~y~ 359 (360)
T cd04951 327 SGEERDIIGAR-RERIV--KKFSINSIVQQWLTLYT 359 (360)
T ss_pred CHHHHHHHHHH-HHHHH--HhcCHHHHHHHHHHHhh
Confidence 66666666666 66554 44999999999999986
No 139
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.32 E-value=1.8e-11 Score=123.06 Aligned_cols=113 Identities=29% Similarity=0.475 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002273 357 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 436 (944)
Q Consensus 357 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~ 436 (944)
++-+-.-|.-+++.++|++|+..|.+|++++|.++..|.+.|.+|.++|+++.|++.++.++.++|.+..+|..||.+|.
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~ 160 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYL 160 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 34556678888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhhCCCChhhhhhHHHHh
Q 002273 437 DAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAM 469 (944)
Q Consensus 437 ~~g~~~eA~~~~~~al~l~P~~~~a~~~~~~~~ 469 (944)
.+|++++|++.|+++|+++|++.....++-.+-
T Consensus 161 ~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae 193 (304)
T KOG0553|consen 161 ALGKYEEAIEAYKKALELDPDNESYKSNLKIAE 193 (304)
T ss_pred ccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHH
Confidence 999999999999999999999997777754443
No 140
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=99.31 E-value=8.5e-10 Score=122.60 Aligned_cols=204 Identities=16% Similarity=0.112 Sum_probs=137.9
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (944)
-......+|..+...|-...|+.+|++. ..|-....||...|+..+|..+..+-++ .|.++..|..+|.+.
T Consensus 397 ~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 397 IWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVL 467 (777)
T ss_pred cchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhc
Confidence 4445566777777777777777777764 5566677777777777777777777776 556666777777666
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 002273 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206 (944)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 206 (944)
....-|++|.++.+..- +.+...+|......++++++.++++..++++|-....|+.+|.+..+.++
T Consensus 468 ~d~s~yEkawElsn~~s-------------arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek 534 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYIS-------------ARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEK 534 (777)
T ss_pred cChHHHHHHHHHhhhhh-------------HHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhh
Confidence 65555555555444321 11233444445556777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Q 002273 207 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDL 272 (944)
Q Consensus 207 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~ 272 (944)
++.|.++|.+.+..+|++.++|.+++..|...++..+|...++++++.+-++...|.+...+..+.
T Consensus 535 ~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdv 600 (777)
T KOG1128|consen 535 EQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDV 600 (777)
T ss_pred hHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhc
Confidence 777777777777777777777777777777777777777777777777666555555554444443
No 141
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.30 E-value=7.8e-11 Score=132.03 Aligned_cols=325 Identities=16% Similarity=0.106 Sum_probs=194.1
Q ss_pred CcHHHHHHhhhhhccCCcEEEEEEeccccCChhhHHHHH--------H-Hhh--hCCceEeccCCCHHHHHHHhH--hCC
Q 002273 523 HSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFRE--------K-VMK--KGGIWRDIYGIDEKKVAAMVR--EDK 589 (944)
Q Consensus 523 h~v~~~~~~~l~~~d~~~fev~~y~~~~~~d~~t~~~~~--------~-~~~--~~~~~~~~~~~~~~~~a~~i~--~d~ 589 (944)
.....++..++..+....++|++++.............. . ... ....+..........+...|+ ..+
T Consensus 14 ~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 93 (377)
T cd03798 14 GGGGIFVKELARALAKRGVEVTVLAPGPWGPKLLDLLKGRLVGVERLPVLLPVVPLLKGPLLYLLAARALLKLLKLKRFR 93 (377)
T ss_pred chHHHHHHHHHHHHHHCCCceEEEecCCCCCCchhhcccccccccccccCcchhhccccchhHHHHHHHHHHHHhcccCC
Confidence 445566677777777788889988765432221110000 0 000 000000000011356788888 999
Q ss_pred ccEEEecCCCCCCCchhhhccCC--cceeeecccCCCCCC-------------CCCccEEEecCCCCCcccccc--cccc
Q 002273 590 IDILVELTGHTANNKLGMMACQP--APVQVTWIGYPNTTG-------------LPTIDYRITDSLADPPETKQK--HVEE 652 (944)
Q Consensus 590 idilvdl~g~t~~~~~~~~a~r~--ApvQ~~~~G~p~t~g-------------~~~~Dy~i~d~~~~p~~~~~~--~~e~ 652 (944)
+||++-.......... ....|. .|+-+...+...... +...|++++..-......... ...+
T Consensus 94 ~dii~~~~~~~~~~~~-~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~~~~~~ 172 (377)
T cd03798 94 PDLIHAHFAYPDGFAA-ALLKRKLGIPLVVTLHGSDVNLLPRKRLLRALLRRALRRADAVIAVSEALADELKALGIDPEK 172 (377)
T ss_pred CCEEEEeccchHHHHH-HHHHHhcCCCEEEEeecchhcccCchhhHHHHHHHHHhcCCeEEeCCHHHHHHHHHhcCCCCc
Confidence 9998765333332222 222222 365554444332211 223566665321111111222 4556
Q ss_pred eEEcCCCccccCCCCCCCCCC---CCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHH
Q 002273 653 LIRLPECFLCYTPSPEAGPVC---PTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVR 727 (944)
Q Consensus 653 ~~~lp~~~~~~~~~~~~~~~~---~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~ 727 (944)
+..+|+.. ++....+... ......++.++++++++. .|....+++++..+....|+.+|.+.|.+ ...
T Consensus 173 ~~~i~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~~~~k~~~~li~~~~~~~~~~~~~~l~i~g~~----~~~ 245 (377)
T cd03798 173 VTVIPNGV---DTERFSPADRAEARKLGLPEDKKVILFVGRLVPRKGIDYLIEALARLLKKRPDVHLVIVGDG----PLR 245 (377)
T ss_pred eEEcCCCc---CcccCCCcchHHHHhccCCCCceEEEEeccCccccCHHHHHHHHHHHHhcCCCeEEEEEcCC----cch
Confidence 77777532 1111110000 011344566677777754 78889999999999988899999998765 334
Q ss_pred HHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhHHHh
Q 002273 728 HRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLT 806 (944)
Q Consensus 728 ~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~ 806 (944)
..+.+.++..++ .++|.+.|.++ ..+....+..+|+++-|..+ +.|++.+|||++|+|||+-....+.. ++.
T Consensus 246 ~~~~~~~~~~~~-~~~v~~~g~~~-~~~~~~~~~~ad~~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~~~~~-----~~~ 318 (377)
T cd03798 246 EALEALAAELGL-EDRVTFLGAVP-HEEVPAYYAAADVFVLPSLREGFGLVLLEAMACGLPVVATDVGGIPE-----IIT 318 (377)
T ss_pred HHHHHHHHhcCC-cceEEEeCCCC-HHHHHHHHHhcCeeecchhhccCChHHHHHHhcCCCEEEecCCChHH-----Hhc
Confidence 556666777888 57999999987 68899999999999988865 77999999999999999843221111 111
Q ss_pred hcCCcccc--cCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 002273 807 KVGLKHLI--AKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 867 (944)
Q Consensus 807 ~~gl~~~v--~~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 867 (944)
. +-..++ ..|.+++++....+.+|+.. .+....+.... ..|++..++..+.++|++
T Consensus 319 ~-~~~g~~~~~~~~~~l~~~i~~~~~~~~~--~~~~~~~~~~~--~~~s~~~~~~~~~~~~~~ 376 (377)
T cd03798 319 D-GENGLLVPPGDPEALAEAILRLLADPWL--RLGRAARRRVA--ERFSWENVAERLLELYRE 376 (377)
T ss_pred C-CcceeEECCCCHHHHHHHHHHHhcCcHH--HHhHHHHHHHH--HHhhHHHHHHHHHHHHhh
Confidence 1 222233 46899999999999999876 44444444443 338999999999988875
No 142
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.30 E-value=7.5e-11 Score=132.36 Aligned_cols=172 Identities=17% Similarity=0.214 Sum_probs=131.0
Q ss_pred CCCCCeEEEecCC--CCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHH
Q 002273 678 LTNGFITFGSFNN--LAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHD 755 (944)
Q Consensus 678 ~~~~~~~f~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~ 755 (944)
+.++.++++++++ ..|..+.++++|.++....|+.+|++.|.+ .....+.+...+.++ .++|.|.|.++ ..+
T Consensus 198 ~~~~~~~i~~~G~~~~~k~~~~l~~~~~~~~~~~~~~~l~i~G~~----~~~~~~~~~~~~~~~-~~~v~~~g~~~-~~~ 271 (374)
T cd03817 198 IPEDEPVLLYVGRLAKEKNIDFLIRAFARLLKEEPDVKLVIVGDG----PEREELEELARELGL-ADRVIFTGFVP-REE 271 (374)
T ss_pred CCCCCeEEEEEeeeecccCHHHHHHHHHHHHHhCCCeEEEEEeCC----chHHHHHHHHHHcCC-CCcEEEeccCC-hHH
Confidence 3455566666664 468889999999999988899999999865 355667777788888 58999999987 688
Q ss_pred HHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccccCC-HHHHHHHHHHHhcCHH
Q 002273 756 HMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKN-EDEYVQLALQLASDVT 833 (944)
Q Consensus 756 ~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~~-~~~y~~~a~~l~~d~~ 833 (944)
....|+.+|+++-|... ++|++.+|||+||+|||+.....+.. ++.. |-..++..+ .+++++....+.+|++
T Consensus 272 ~~~~~~~ad~~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~~~~~~-----~i~~-~~~g~~~~~~~~~~~~~i~~l~~~~~ 345 (374)
T cd03817 272 LPDYYKAADLFVFASTTETQGLVLLEAMAAGLPVVAVDAPGLPD-----LVAD-GENGFLFPPGDEALAEALLRLLQDPE 345 (374)
T ss_pred HHHHHHHcCEEEecccccCcChHHHHHHHcCCcEEEeCCCChhh-----heec-CceeEEeCCCCHHHHHHHHHHHhChH
Confidence 99999999999988865 77899999999999999944322211 1111 223344433 3399999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 002273 834 ALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 867 (944)
Q Consensus 834 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 867 (944)
.++.+++..++..... . +.+.+++.|++
T Consensus 346 ~~~~~~~~~~~~~~~~---~---~~~~~~~~~~~ 373 (374)
T cd03817 346 LRRRLSKNAEESAEKF---S---FAKKVEKLYEE 373 (374)
T ss_pred HHHHHHHHHHHHHHHH---H---HHHHHHHHHhc
Confidence 9999999888876432 1 77888888765
No 143
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.29 E-value=3.4e-11 Score=121.12 Aligned_cols=123 Identities=33% Similarity=0.507 Sum_probs=115.0
Q ss_pred HhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002273 153 AECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG 232 (944)
Q Consensus 153 ~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 232 (944)
...+|.-+..-|+-+.+.++|++|+..|.+||+++|.++..|.+.+.+|.++|.++.|++..+.++.++|.+..+|..||
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG 156 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLG 156 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 45567788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhh
Q 002273 233 VIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK 275 (944)
Q Consensus 233 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~ 275 (944)
.+|..+|++++|++.|+++++++|++...+.+|..+-..++..
T Consensus 157 ~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~ 199 (304)
T KOG0553|consen 157 LAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEP 199 (304)
T ss_pred HHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999998888887776665544
No 144
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=99.29 E-value=1.1e-10 Score=133.77 Aligned_cols=166 Identities=14% Similarity=0.065 Sum_probs=123.0
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHH--HhHcCCceEEEecCCCCCH-------HHHHHHHHHHHHcCCCCCcEEEccC
Q 002273 681 GFITFGSFNNL--AKITPKVLQVWARI--LCAVPNSRLVVKCKPFCCD-------SVRHRFLSTLEQLGLESLRVDLLPL 749 (944)
Q Consensus 681 ~~~~f~~~~~~--~K~~~~~~~~~~~i--l~~~p~~~l~~~~~~~~~~-------~~~~~~~~~~~~~gi~~~rv~~~~~ 749 (944)
+..++++++++ .|..+.++++++++ +...|+.+| ++|++-..+ ...+.+.....+.|+ .++|.|.|.
T Consensus 247 ~~~~i~~vGrl~~~Kg~~~li~A~~~l~~~~~~~~l~l-i~G~g~~~~~l~~~~~~~~~~~~~~~~~~~l-~~~V~f~g~ 324 (439)
T TIGR02472 247 EKPPILAISRPDRRKNIPSLVEAYGRSPKLQEMANLVL-VLGCRDDIRKMESQQREVLQKVLLLIDRYDL-YGKVAYPKH 324 (439)
T ss_pred CCcEEEEEcCCcccCCHHHHHHHHHhChhhhhhccEEE-EeCCccccccccHHHHHHHHHHHHHHHHcCC-CceEEecCC
Confidence 34456666654 89999999999864 233344332 444331111 123345566788899 589999998
Q ss_pred ccCcHHHHHhcccc----cEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCccc--------c--
Q 002273 750 ILLNHDHMQAYSLM----DISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHL--------I-- 814 (944)
Q Consensus 750 ~~~~~~~~~~~~~~----Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~--------v-- 814 (944)
++ ..+....|+.+ |+++-|.-+ +.|.|.+|||++|+|||+ +++| |++|+ +
T Consensus 325 ~~-~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~-------s~~g-------g~~eiv~~~~~G~lv~ 389 (439)
T TIGR02472 325 HR-PDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVA-------TDDG-------GPRDIIANCRNGLLVD 389 (439)
T ss_pred CC-HHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEE-------eCCC-------CcHHHhcCCCcEEEeC
Confidence 76 56777777766 999877655 779999999999999999 7776 44443 3
Q ss_pred cCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 002273 815 AKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTY 865 (944)
Q Consensus 815 ~~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~ 865 (944)
..|++++.+...++.+|++.++++++..++++... |+++.++.++++.+
T Consensus 390 ~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~--fsw~~~~~~~~~l~ 438 (439)
T TIGR02472 390 VLDLEAIASALEDALSDSSQWQLWSRNGIEGVRRH--YSWDAHVEKYLRIL 438 (439)
T ss_pred CCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHh
Confidence 35899999999999999999999999999887544 99999999998875
No 145
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.28 E-value=9e-11 Score=110.88 Aligned_cols=119 Identities=16% Similarity=0.228 Sum_probs=113.8
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC
Q 002273 310 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 389 (944)
Q Consensus 310 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 389 (944)
+.+++++..+|++......+|..+...|++++|+..+++++..+|.++.++..+|.++...|++++|+.+++++++.+|+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 83 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD 83 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 002273 390 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 428 (944)
Q Consensus 390 ~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~ 428 (944)
++..++.+|.++...|++++|+..++++++.+|++....
T Consensus 84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 84 DPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 999999999999999999999999999999999876643
No 146
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.27 E-value=4e-10 Score=132.50 Aligned_cols=149 Identities=14% Similarity=0.102 Sum_probs=110.6
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 002273 106 SEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK 185 (944)
Q Consensus 106 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~ 185 (944)
.......|+++.++..||.+....|.+++|...++.++++.|++..+ ...++.++.+.+++++|+..+++++.
T Consensus 76 ~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a-------~~~~a~~L~~~~~~eeA~~~~~~~l~ 148 (694)
T PRK15179 76 LDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEA-------FILMLRGVKRQQGIEAGRAEIELYFS 148 (694)
T ss_pred HHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHH-------HHHHHHHHHHhccHHHHHHHHHHHhh
Confidence 33344567777777777777777777777777777777777777665 45556666667777777777777777
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Q 002273 186 IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 261 (944)
Q Consensus 186 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 261 (944)
.+|++...++.+|.++.+.|++++|+.+|++++..+|++..++..+|.++...|+.++|...|+++++...+-...
T Consensus 149 ~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~ 224 (694)
T PRK15179 149 GGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARK 224 (694)
T ss_pred cCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHH
Confidence 7777777777777777777778888887877777777777777777777777787777777777777776554433
No 147
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.27 E-value=1.1e-10 Score=108.14 Aligned_cols=105 Identities=12% Similarity=0.047 Sum_probs=82.6
Q ss_pred hhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 002273 351 HFN-PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 429 (944)
Q Consensus 351 ~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~ 429 (944)
.+. ++..+..+.+|..++..|++++|+..|+-+..++|.+...|++||.++..+|++++|+..|.+++.++|+++..++
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~ 107 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW 107 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 344 5566677777777888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC
Q 002273 430 NLGVLYRDAGSISLAIDAYEQCLKID 455 (944)
Q Consensus 430 ~la~~~~~~g~~~eA~~~~~~al~l~ 455 (944)
++|.|+...|+.+.|++.|+.++...
T Consensus 108 ~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 108 AAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 88888888888888888888877765
No 148
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=99.27 E-value=7.1e-11 Score=131.91 Aligned_cols=325 Identities=13% Similarity=0.105 Sum_probs=180.4
Q ss_pred cEEEeecCCCcc-CcHHHHHHhhhhhccCC--cEEEEEEeccccCChhhHHHHHHHhh---hCCceEeccC--CCHHHHH
Q 002273 511 LVIGYVSPDYFT-HSVSYFIEAPLVYHDYQ--NYKVVVYSAVVKADAKTIRFREKVMK---KGGIWRDIYG--IDEKKVA 582 (944)
Q Consensus 511 lriGy~S~d~~~-h~v~~~~~~~l~~~d~~--~fev~~y~~~~~~d~~t~~~~~~~~~---~~~~~~~~~~--~~~~~~a 582 (944)
+||.++...+.. --+..++..+...+... .++++++......+.. ..+. +.. .......... .....+.
T Consensus 1 mkI~~~~~~~~~~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~ 77 (359)
T PRK09922 1 MKIAFIGEAVSGFGGMETVISNVINTFEESKINCEMFFFCRNDKMDKA--WLKE-IKYAQSFSNIKLSFLRRAKHVYNFS 77 (359)
T ss_pred CeeEEecccccCCCchhHHHHHHHHHhhhcCcceeEEEEecCCCCChH--HHHh-cchhcccccchhhhhcccHHHHHHH
Confidence 366777654322 23445666666666666 7999888765432211 1111 100 0000000000 1135677
Q ss_pred HHhHhCCccEEEecCCCCCCCchhhhccC----Ccceeeeccc--CCCCCC-----CCCccEEEecCCCCCcccccc--c
Q 002273 583 AMVREDKIDILVELTGHTANNKLGMMACQ----PAPVQVTWIG--YPNTTG-----LPTIDYRITDSLADPPETKQK--H 649 (944)
Q Consensus 583 ~~i~~d~idilvdl~g~t~~~~~~~~a~r----~ApvQ~~~~G--~p~t~g-----~~~~Dy~i~d~~~~p~~~~~~--~ 649 (944)
+.|++.++||++-.+.. ......++.+ |-| .++|.- .+.... +...|++++-....-.....+ -
T Consensus 78 ~~l~~~~~Dii~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~h~~~~~~~~~~~~~~~~~d~~i~~S~~~~~~~~~~~~~ 154 (359)
T PRK09922 78 KWLKETQPDIVICIDVI--SCLYANKARKKSGKQFK-IFSWPHFSLDHKKHAECKKITCADYHLAISSGIKEQMMARGIS 154 (359)
T ss_pred HHHHhcCCCEEEEcCHH--HHHHHHHHHHHhCCCCe-EEEEecCcccccchhhhhhhhcCCEEEEcCHHHHHHHHHcCCC
Confidence 88999999999753221 1122222221 222 244431 111111 223344443210000000011 1
Q ss_pred ccceEEcCCCccccCCCCCCCCCCCCCCCCCCCeEEEecCCC----CcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHH
Q 002273 650 VEELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNL----AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDS 725 (944)
Q Consensus 650 ~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~----~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~ 725 (944)
.+++..+|+.. . ...... +.+. ....++|++++++ .|....+++++..+. ++.+|+++|.+ .
T Consensus 155 ~~ki~vi~N~i-d--~~~~~~---~~~~-~~~~~~i~~~Grl~~~~~k~~~~l~~a~~~~~---~~~~l~ivG~g----~ 220 (359)
T PRK09922 155 AQRISVIYNPV-E--IKTIII---PPPE-RDKPAVFLYVGRLKFEGQKNVKELFDGLSQTT---GEWQLHIIGDG----S 220 (359)
T ss_pred HHHEEEEcCCC-C--HHHccC---CCcc-cCCCcEEEEEEEEecccCcCHHHHHHHHHhhC---CCeEEEEEeCC----c
Confidence 34566666532 1 000000 1111 1234556666664 377777888777653 47899999876 3
Q ss_pred HHHHHHHHHHHcCCCCCcEEEccCccCc-HHHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCccccc-chh
Q 002273 726 VRHRFLSTLEQLGLESLRVDLLPLILLN-HDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHN-VGV 802 (944)
Q Consensus 726 ~~~~~~~~~~~~gi~~~rv~~~~~~~~~-~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r-~~~ 802 (944)
.++.+++..++.|+ .++|.|.|.+... +.....|..+|+++-|..+ +.|.|++|||+||+|||+ ++ +++
T Consensus 221 ~~~~l~~~~~~~~l-~~~v~f~G~~~~~~~~~~~~~~~~d~~v~~s~~Egf~~~~lEAma~G~Pvv~-------s~~~~g 292 (359)
T PRK09922 221 DFEKCKAYSRELGI-EQRIIWHGWQSQPWEVVQQKIKNVSALLLTSKFEGFPMTLLEAMSYGIPCIS-------SDCMSG 292 (359)
T ss_pred cHHHHHHHHHHcCC-CCeEEEecccCCcHHHHHHHHhcCcEEEECCcccCcChHHHHHHHcCCCEEE-------eCCCCC
Confidence 46778888889999 5899999987644 3455567899999988766 779999999999999999 44 331
Q ss_pred --HHHhhcCCcccc--cCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 002273 803 --SLLTKVGLKHLI--AKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMW 869 (944)
Q Consensus 803 --~~l~~~gl~~~v--~~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 869 (944)
.++.. |...++ ..|.+++++....|.+|++.+ .+...++.+ ..|..+.|++.|-++|..+-
T Consensus 293 ~~eiv~~-~~~G~lv~~~d~~~la~~i~~l~~~~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 357 (359)
T PRK09922 293 PRDIIKP-GLNGELYTPGNIDEFVGKLNKVISGEVKY--QHDAIPNSI---ERFYEVLYFKNLNNALFSKL 357 (359)
T ss_pred hHHHccC-CCceEEECCCCHHHHHHHHHHHHhCcccC--CHHHHHHHH---HHhhHHHHHHHHHHHHHHHh
Confidence 11211 333333 469999999999999999743 122222221 22556888888888887764
No 149
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.26 E-value=1.4e-10 Score=132.39 Aligned_cols=176 Identities=16% Similarity=0.132 Sum_probs=138.3
Q ss_pred CCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCc
Q 002273 676 PALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLN 753 (944)
Q Consensus 676 ~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~ 753 (944)
.+++++.++++..++. .|....+++++.++ ...|+.+|+++|.+ ..++.+++.++++|++ +|.|+|.++ .
T Consensus 223 ~~~~~~~~~i~~~G~l~~~kg~~~li~a~~~l-~~~~~~~l~ivG~g----~~~~~l~~~~~~~~l~--~v~f~G~~~-~ 294 (412)
T PRK10307 223 LGLPDGKKIVLYSGNIGEKQGLELVIDAARRL-RDRPDLIFVICGQG----GGKARLEKMAQCRGLP--NVHFLPLQP-Y 294 (412)
T ss_pred cCCCCCCEEEEEcCccccccCHHHHHHHHHHh-ccCCCeEEEEECCC----hhHHHHHHHHHHcCCC--ceEEeCCCC-H
Confidence 3556676777777765 78889999998776 55689999999876 4567788888899994 799999987 6
Q ss_pred HHHHHhcccccEEecCCCCCC-----cccHHHhhhcCCcEEecCCCcccccchh----HHHhhcCCcccc-cCCHHHHHH
Q 002273 754 HDHMQAYSLMDISLDTFPYAG-----TTTTCESLYMGVPCVTMAGSVHAHNVGV----SLLTKVGLKHLI-AKNEDEYVQ 823 (944)
Q Consensus 754 ~~~~~~~~~~Di~Ld~~~~~~-----~~t~~eal~~gvPvvt~~g~~~~~r~~~----~~l~~~gl~~~v-~~~~~~y~~ 823 (944)
++....|+.+||++-|+-..+ ++...|+|+||+|||+ ++.+. .+.. +..-++ ..|++++.+
T Consensus 295 ~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~-------s~~~g~~~~~~i~--~~G~~~~~~d~~~la~ 365 (412)
T PRK10307 295 DRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVA-------TAEPGTELGQLVE--GIGVCVEPESVEALVA 365 (412)
T ss_pred HHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEE-------EeCCCchHHHHHh--CCcEEeCCCCHHHHHH
Confidence 788999999999987775533 3346899999999999 44321 1222 322233 368999999
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 002273 824 LALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 870 (944)
Q Consensus 824 ~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 870 (944)
...+|.+|++.+..+++..++...+ .|+++..++.+++.|+++..
T Consensus 366 ~i~~l~~~~~~~~~~~~~a~~~~~~--~fs~~~~~~~~~~~~~~~~~ 410 (412)
T PRK10307 366 AIAALARQALLRPKLGTVAREYAER--TLDKENVLRQFIADIRGLVA 410 (412)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHH--HcCHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999988753 49999999999999998653
No 150
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=99.25 E-value=1.6e-10 Score=130.94 Aligned_cols=178 Identities=13% Similarity=0.123 Sum_probs=135.5
Q ss_pred CCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcc-CccCc
Q 002273 677 ALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLP-LILLN 753 (944)
Q Consensus 677 ~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~-~~~~~ 753 (944)
+++++.++|+.+.++ .|..+.+++++.++. ++.+|++++++...+...+.+++.+...+...++|+|.+ .++ .
T Consensus 196 ~~~~~~~~i~~~Grl~~~Kg~~~li~a~~~l~---~~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~ 271 (388)
T TIGR02149 196 GIDRSRPYILFVGRITRQKGVPHLLDAVHYIP---KDVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLP-K 271 (388)
T ss_pred CCCCCceEEEEEcccccccCHHHHHHHHHHHh---hcCcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCC-H
Confidence 455666677777765 688999999988864 567888876654455567778888888888667788764 454 6
Q ss_pred HHHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchh--HHHhhcCCccccc--CCH------HHHH
Q 002273 754 HDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGV--SLLTKVGLKHLIA--KNE------DEYV 822 (944)
Q Consensus 754 ~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~--~~l~~~gl~~~v~--~~~------~~y~ 822 (944)
.+....|..+||+|-|+.+ +.|.+.+|||++|+|||+ +++|. .++.. |...++. .|. +++.
T Consensus 272 ~~~~~~~~~aDv~v~ps~~e~~g~~~lEA~a~G~PvI~-------s~~~~~~e~i~~-~~~G~~~~~~~~~~~~~~~~l~ 343 (388)
T TIGR02149 272 EELVELLSNAEVFVCPSIYEPLGIVNLEAMACGTPVVA-------SATGGIPEVVVD-GETGFLVPPDNSDADGFQAELA 343 (388)
T ss_pred HHHHHHHHhCCEEEeCCccCCCChHHHHHHHcCCCEEE-------eCCCCHHHHhhC-CCceEEcCCCCCcccchHHHHH
Confidence 8899999999999988866 779999999999999999 55541 11111 2222332 344 7899
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 002273 823 QLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNM 868 (944)
Q Consensus 823 ~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 868 (944)
+....+..|++.++.+++..++...+. |+++.++.++.+.|+++
T Consensus 344 ~~i~~l~~~~~~~~~~~~~a~~~~~~~--~s~~~~~~~~~~~y~~~ 387 (388)
T TIGR02149 344 KAINILLADPELAKKMGIAGRKRAEEE--FSWGSIAKKTVEMYRKV 387 (388)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHhh
Confidence 999999999999999999988876544 99999999999999875
No 151
>PLN02939 transferase, transferring glycosyl groups
Probab=99.24 E-value=2.4e-10 Score=134.35 Aligned_cols=172 Identities=13% Similarity=0.072 Sum_probs=130.4
Q ss_pred CCCCC---CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCc
Q 002273 676 PALTN---GFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLI 750 (944)
Q Consensus 676 ~~~~~---~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~ 750 (944)
.+++. +.++||++.|+ .|..+.+++++.+++. ++.+|+|+|.|- .......+.....++|+ .+||.|.+..
T Consensus 770 lGL~~~d~d~pLIg~VGRL~~QKGiDlLleA~~~Ll~--~dvqLVIvGdGp-~~~~e~eL~~La~~l~l-~drV~FlG~~ 845 (977)
T PLN02939 770 LGLSSADASQPLVGCITRLVPQKGVHLIRHAIYKTAE--LGGQFVLLGSSP-VPHIQREFEGIADQFQS-NNNIRLILKY 845 (977)
T ss_pred hCCCcccccceEEEEeecCCcccChHHHHHHHHHHhh--cCCEEEEEeCCC-cHHHHHHHHHHHHHcCC-CCeEEEEecc
Confidence 45552 56789999976 8999999999999885 688999988652 22445677788888898 5899999875
Q ss_pred cCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccc---------------
Q 002273 751 LLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLI--------------- 814 (944)
Q Consensus 751 ~~~~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v--------------- 814 (944)
. ...-...|..+|+||-|+-| +.|.|.+|||++|+|+|+ +++| |++|.|
T Consensus 846 d-e~lah~IYAaADIFLmPSr~EPfGLvqLEAMAyGtPPVV-------s~vG-------GL~DtV~d~d~e~i~~eg~NG 910 (977)
T PLN02939 846 D-EALSHSIYAASDMFIIPSMFEPCGLTQMIAMRYGSVPIV-------RKTG-------GLNDSVFDFDDETIPVELRNG 910 (977)
T ss_pred C-HHHHHHHHHhCCEEEECCCccCCcHHHHHHHHCCCCEEE-------ecCC-------CCcceeecCCccccccCCCce
Confidence 4 23334688999999988877 889999999999988887 6666 554433
Q ss_pred ----cCCHHHHHHHHHHHh----cCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHH
Q 002273 815 ----AKNEDEYVQLALQLA----SDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHR 871 (944)
Q Consensus 815 ----~~~~~~y~~~a~~l~----~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 871 (944)
..|++++.....++. .|++.+.++++.. +. ..|+++.++..++++|+.+..+
T Consensus 911 fLf~~~D~eaLa~AL~rAL~~~~~dpe~~~~L~~~a---m~--~dFSWe~~A~qYeeLY~~ll~~ 970 (977)
T PLN02939 911 FTFLTPDEQGLNSALERAFNYYKRKPEVWKQLVQKD---MN--IDFSWDSSASQYEELYQRAVAR 970 (977)
T ss_pred EEecCCCHHHHHHHHHHHHHHhccCHHHHHHHHHHH---HH--hcCCHHHHHHHHHHHHHHHHHh
Confidence 247777766555543 4788888877632 32 4599999999999999999864
No 152
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.23 E-value=2.7e-10 Score=127.34 Aligned_cols=253 Identities=14% Similarity=0.116 Sum_probs=157.0
Q ss_pred hHhCCccEEEecCCCCCCCchhhhccCCcceeeecccCCCCCC-------------CCCccEEEecCCCCCc--cccccc
Q 002273 585 VREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTG-------------LPTIDYRITDSLADPP--ETKQKH 649 (944)
Q Consensus 585 i~~d~idilvdl~g~t~~~~~~~~a~r~ApvQ~~~~G~p~t~g-------------~~~~Dy~i~d~~~~p~--~~~~~~ 649 (944)
+...+.||++--.......-...+..+..|+-++|-+...... +...|.+|+..-..-. .....+
T Consensus 79 ~~~~~~Dii~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~s~~~~~~~~~~~~~ 158 (357)
T cd03795 79 KLAKKADVIHLHFPNPLADLALLLLPRKKPVVVHWHSDIVKQKLLLKLYRPLQRRFLRRADAIVATSPNYAETSPVLRRF 158 (357)
T ss_pred hcCCCCCEEEEecCcchHHHHHHHhccCceEEEEEcChhhccchhhhhhhHHHHHHHHhcCEEEeCcHHHHHHHHHhcCC
Confidence 5678999987433332222222333345677666654322211 1224555532100000 011233
Q ss_pred ccceEEcCCCccccCCCCCCCCCC-CCCCCCCCCeEEEecCC--CCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHH
Q 002273 650 VEELIRLPECFLCYTPSPEAGPVC-PTPALTNGFITFGSFNN--LAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSV 726 (944)
Q Consensus 650 ~e~~~~lp~~~~~~~~~~~~~~~~-~~~~~~~~~~~f~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~ 726 (944)
.+++..+|+..-. .......... .......+.++++++.+ ..|....+++++.++. +.+|++.|.+ ..
T Consensus 159 ~~~~~~i~~gi~~-~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~----~~~l~i~G~g----~~ 229 (357)
T cd03795 159 RDKVRVIPLGLDP-ARYPRPDALEEAIWRRAAGRPFFLFVGRLVYYKGLDVLLEAAAALP----DAPLVIVGEG----PL 229 (357)
T ss_pred ccceEEecCCCCh-hhcCCcchhhhHhhcCCCCCcEEEEecccccccCHHHHHHHHHhcc----CcEEEEEeCC----hh
Confidence 4778888864211 1000000000 01123344455666665 5888888888887754 7899998866 35
Q ss_pred HHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCC---CCCcccHHHhhhcCCcEEecCCCcccccchhH
Q 002273 727 RHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFP---YAGTTTTCESLYMGVPCVTMAGSVHAHNVGVS 803 (944)
Q Consensus 727 ~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~---~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~ 803 (944)
...+.+.+.+.+. .++|.|.|.++ ..+....|..||+++-|.. .+.|.+.+|||++|+|||+ +++++.
T Consensus 230 ~~~~~~~~~~~~~-~~~V~~~g~v~-~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~-------~~~~~~ 300 (357)
T cd03795 230 EAELEALAAALGL-LDRVRFLGRLD-DEEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVIS-------TEIGTG 300 (357)
T ss_pred HHHHHHHHHhcCC-cceEEEcCCCC-HHHHHHHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEe-------cCCCCc
Confidence 5667777778888 58999999987 6788999999999987764 4778999999999999999 444321
Q ss_pred --HHhhcCCccccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHH
Q 002273 804 --LLTKVGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNF 857 (944)
Q Consensus 804 --~l~~~gl~~~v~--~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~ 857 (944)
++..-|-..++. .|.+++++....+.+|++.++.++...++.+.+. |+...+
T Consensus 301 ~~~i~~~~~~g~~~~~~d~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~--~s~~~~ 356 (357)
T cd03795 301 GSYVNLHGVTGLVVPPGDPAALAEAIRRLLEDPELRERLGEAARERAEEE--FTADRM 356 (357)
T ss_pred hhHHhhCCCceEEeCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHh--cchHhh
Confidence 111113333343 5899999999999999999999999999887543 776654
No 153
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.23 E-value=1.4e-09 Score=121.01 Aligned_cols=169 Identities=16% Similarity=0.120 Sum_probs=124.4
Q ss_pred CCCCeEEEecCC--CCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHH
Q 002273 679 TNGFITFGSFNN--LAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 756 (944)
Q Consensus 679 ~~~~~~f~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~ 756 (944)
.++.++|+.+++ ..|..+.+++++..+....|+.+|++.|.+......... .+...+. .++|.|.|. ..+.
T Consensus 185 ~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~---~~~~~~~-~~~v~~~g~---~~~~ 257 (359)
T cd03808 185 PEDDPVFLFVARLLKDKGIDELLEAARILKAKGPNVRLLLVGDGDEENPAAIL---EIEKLGL-EGRVEFLGF---RDDV 257 (359)
T ss_pred CCCCcEEEEEeccccccCHHHHHHHHHHHHhcCCCeEEEEEcCCCcchhhHHH---HHHhcCC-cceEEEeec---cccH
Confidence 345566777664 478899999999999888899999999876432222211 2455666 578999997 3567
Q ss_pred HHhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCccccc--CCHHHHHHHHHHHhcCHH
Q 002273 757 MQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQLASDVT 833 (944)
Q Consensus 757 ~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~--~~~~~y~~~a~~l~~d~~ 833 (944)
...|..+|+++-|..+ +.|++.+|||++|+|||+-...... -++.. |-..++. .|++++++....+..|++
T Consensus 258 ~~~~~~adi~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~~~~-----~~i~~-~~~g~~~~~~~~~~~~~~i~~l~~~~~ 331 (359)
T cd03808 258 PELLAAADVFVLPSYREGLPRVLLEAMAMGRPVIATDVPGCR-----EAVID-GVNGFLVPPGDAEALADAIERLIEDPE 331 (359)
T ss_pred HHHHHhccEEEecCcccCcchHHHHHHHcCCCEEEecCCCch-----hhhhc-CcceEEECCCCHHHHHHHHHHHHhCHH
Confidence 8888999999988765 6699999999999999994322211 12221 2233443 478999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 002273 834 ALANLRMSLRDLMSKSPVCDGQNFALGLE 862 (944)
Q Consensus 834 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~e 862 (944)
.+..++...++..... |+++.+++.++
T Consensus 332 ~~~~~~~~~~~~~~~~--~s~~~~~~~~~ 358 (359)
T cd03808 332 LRARMGQAARKRAEEE--FDEEIVVKKLL 358 (359)
T ss_pred HHHHHHHHHHHHHHHh--cCHHHHHHHhh
Confidence 9999999888876533 89998888775
No 154
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.23 E-value=1.3e-10 Score=123.00 Aligned_cols=168 Identities=14% Similarity=0.038 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 002273 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 270 (944)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~ 270 (944)
.......|.++...|++++|++.+.+. .+.+.......++..+++++.|.+.++.+.+.+.+.... .++.++.
T Consensus 102 ~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~--qLa~awv 174 (290)
T PF04733_consen 102 EIVQLLAATILFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILT--QLAEAWV 174 (290)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHH--HHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHH--HHHHHHH
Confidence 445566677777888888888887754 567788888889999999999999998887776654433 3333322
Q ss_pred HhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002273 271 DLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 350 (944)
Q Consensus 271 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 350 (944)
.+.. -.+++++|...|++..+..+.++..+..++.++..+|++++|.+.+++++
T Consensus 175 ~l~~--------------------------g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al 228 (290)
T PF04733_consen 175 NLAT--------------------------GGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEAL 228 (290)
T ss_dssp HHHH--------------------------TTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHC
T ss_pred HHHh--------------------------CchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 2111 01234555555555554444555555555555555555555555555555
Q ss_pred hhCCCCHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhhCCCCH
Q 002273 351 HFNPHCAEACNNLGVIYKDRDNL-DKAVECYQMALSIKPNFS 391 (944)
Q Consensus 351 ~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~ 391 (944)
..+|.+++++.+++.+....|+. +.+.+++.+....+|+++
T Consensus 229 ~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 229 EKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp CC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 55555555555555555555544 334444444444455443
No 155
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.22 E-value=6.4e-10 Score=124.77 Aligned_cols=166 Identities=19% Similarity=0.152 Sum_probs=124.4
Q ss_pred CeEEEecCCC--CcCCHHHHHHHHHHHhH-cCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHH
Q 002273 682 FITFGSFNNL--AKITPKVLQVWARILCA-VPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 758 (944)
Q Consensus 682 ~~~f~~~~~~--~K~~~~~~~~~~~il~~-~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 758 (944)
.+.|+..... .|..+.++++|..+.+. .|+.++++.|.+.. ... .++ .++|.|+|.+++..+...
T Consensus 193 ~i~~~~~~~~~~~K~~~~ll~a~~~l~~~~~~~~~~~i~G~~~~--~~~---------~~~-~~~v~~~g~~~~~~~~~~ 260 (365)
T cd03825 193 IILFGAVGGTDPRKGFDELIEALKRLAERWKDDIELVVFGASDP--EIP---------PDL-PFPVHYLGSLNDDESLAL 260 (365)
T ss_pred EEEEEecCCCccccCHHHHHHHHHHhhhccCCCeEEEEeCCCch--hhh---------ccC-CCceEecCCcCCHHHHHH
Confidence 3455665544 89999999999987665 68899999876521 111 145 478999999876667888
Q ss_pred hcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCccccc--CCHHHHHHHHHHHhcCHHHH
Q 002273 759 AYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQLASDVTAL 835 (944)
Q Consensus 759 ~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~--~~~~~y~~~a~~l~~d~~~~ 835 (944)
.|..+|++|-|.-+ +.|.+++|||.+|+|||+.....+..- +.. +-..++. .|.+++++....+.+|++.+
T Consensus 261 ~~~~ad~~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~~~~e~-----~~~-~~~g~~~~~~~~~~~~~~l~~l~~~~~~~ 334 (365)
T cd03825 261 IYSAADVFVVPSLQENFPNTAIEALACGTPVVAFDVGGIPDI-----VDH-GVTGYLAKPGDPEDLAEGIEWLLADPDER 334 (365)
T ss_pred HHHhCCEEEeccccccccHHHHHHHhcCCCEEEecCCCChhh-----eeC-CCceEEeCCCCHHHHHHHHHHHHhCHHHH
Confidence 89999999988755 889999999999999998432222211 111 1123332 37899999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 002273 836 ANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 867 (944)
Q Consensus 836 ~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 867 (944)
.++++..++.... .|+++.+++.++++|++
T Consensus 335 ~~~~~~~~~~~~~--~~s~~~~~~~~~~~y~~ 364 (365)
T cd03825 335 EELGEAARELAEN--EFDSRVQAKRYLSLYEE 364 (365)
T ss_pred HHHHHHHHHHHHH--hcCHHHHHHHHHHHHhh
Confidence 9999999887643 48999999999999976
No 156
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.21 E-value=2.3e-10 Score=127.67 Aligned_cols=166 Identities=20% Similarity=0.192 Sum_probs=121.9
Q ss_pred CCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHH
Q 002273 678 LTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHD 755 (944)
Q Consensus 678 ~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~ 755 (944)
.+++.++|+.+.+. .|..+.+++++..+.. |+.+|++.|.+... ....... +. .++|.|.|.++ ..+
T Consensus 187 ~~~~~~~i~~~G~~~~~k~~~~li~~~~~l~~--~~~~l~i~G~~~~~----~~~~~~~---~~-~~~v~~~g~~~-~~~ 255 (359)
T cd03823 187 PPGGRLRFGFIGQLTPHKGVDLLLEAFKRLPR--GDIELVIVGNGLEL----EEESYEL---EG-DPRVEFLGAYP-QEE 255 (359)
T ss_pred CCCCceEEEEEecCccccCHHHHHHHHHHHHh--cCcEEEEEcCchhh----hHHHHhh---cC-CCeEEEeCCCC-HHH
Confidence 44556677776654 7888889999988776 89999998865321 1111111 44 47899999987 689
Q ss_pred HHHhcccccEEecCCC--CCCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccc--cCCHHHHHHHHHHHhcC
Q 002273 756 HMQAYSLMDISLDTFP--YAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLI--AKNEDEYVQLALQLASD 831 (944)
Q Consensus 756 ~~~~~~~~Di~Ld~~~--~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v--~~~~~~y~~~a~~l~~d 831 (944)
....|..+|+++-|.. .+.|.+.+|||++|+|||+-...... .++.. |...++ ..|.+++++....+.+|
T Consensus 256 ~~~~~~~ad~~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~-----e~i~~-~~~g~~~~~~d~~~l~~~i~~l~~~ 329 (359)
T cd03823 256 IDDFYAEIDVLVVPSIWPENFPLVIREALAAGVPVIASDIGGMA-----ELVRD-GVNGLLFPPGDAEDLAAALERLIDD 329 (359)
T ss_pred HHHHHHhCCEEEEcCcccCCCChHHHHHHHCCCCEEECCCCCHH-----HHhcC-CCcEEEECCCCHHHHHHHHHHHHhC
Confidence 9999999999998874 47788999999999999994322111 11222 222333 34589999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 002273 832 VTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 866 (944)
Q Consensus 832 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 866 (944)
++.++.+++..++.... +.+++.++++|+
T Consensus 330 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 358 (359)
T cd03823 330 PDLLERLRAGIEPPRSI------EDQAEEYLKLYR 358 (359)
T ss_pred hHHHHHHHHhHHHhhhH------HHHHHHHHHHhh
Confidence 99999999988887532 888899988885
No 157
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.20 E-value=1.4e-10 Score=122.94 Aligned_cols=257 Identities=18% Similarity=0.107 Sum_probs=184.5
Q ss_pred HHHcCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002273 167 LKLAGNTQDGIQKYYEALKIDP-HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAI 245 (944)
Q Consensus 167 ~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 245 (944)
++-.|+|.+++..++ ....++ ........+.+++..+|+++..+..... ..+....+...++..+...++.+.++
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTHHCHH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccchHHHH
Confidence 445689999987766 222233 2345667788889999998876655433 22333455566666666556666776
Q ss_pred HHHHHHHHhCCC--cHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCH
Q 002273 246 ACYERCLAVSPN--FEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYA 323 (944)
Q Consensus 246 ~~~~~al~~~p~--~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~ 323 (944)
..++..+..... +.......+.+ +...|++++|++.+.+. .+.
T Consensus 87 ~~l~~~~~~~~~~~~~~~~~~~A~i------------------------------~~~~~~~~~AL~~l~~~-----~~l 131 (290)
T PF04733_consen 87 EELKELLADQAGESNEIVQLLAATI------------------------------LFHEGDYEEALKLLHKG-----GSL 131 (290)
T ss_dssp HHHHHCCCTS---CHHHHHHHHHHH------------------------------HCCCCHHHHHHCCCTTT-----TCH
T ss_pred HHHHHHHHhccccccHHHHHHHHHH------------------------------HHHcCCHHHHHHHHHcc-----Ccc
Confidence 666554433222 22222222222 44567788888887653 567
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 002273 324 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD--NLDKAVECYQMALSIKPNFSQSLNNLGVVY 401 (944)
Q Consensus 324 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 401 (944)
+.......++...++++.|.+.++.+.+.+.+..-.....+++....| ++.+|...|++..+..+..+..+..++.++
T Consensus 132 E~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~ 211 (290)
T PF04733_consen 132 ELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCH 211 (290)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 888888999999999999999999999988877666666666666655 699999999998888888899999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhCCCChhhh
Q 002273 402 TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSI-SLAIDAYEQCLKIDPDSRNAG 462 (944)
Q Consensus 402 ~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~-~eA~~~~~~al~l~P~~~~a~ 462 (944)
..+|++++|.+.++++++.+|++++++.+++.+...+|+. +.+.+++.+....+|+++-..
T Consensus 212 l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~ 273 (290)
T PF04733_consen 212 LQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVK 273 (290)
T ss_dssp HHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHH
Confidence 9999999999999999999999999999999999999998 667788888888999987443
No 158
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=99.20 E-value=4.9e-10 Score=134.06 Aligned_cols=179 Identities=15% Similarity=0.061 Sum_probs=134.1
Q ss_pred CCCeEEEecCCC--CcCCHHHHHHHHHHHhH--cCCceEEEecCCCC-------CHHHHHHHHHHHHHcCCCCCcEEEcc
Q 002273 680 NGFITFGSFNNL--AKITPKVLQVWARILCA--VPNSRLVVKCKPFC-------CDSVRHRFLSTLEQLGLESLRVDLLP 748 (944)
Q Consensus 680 ~~~~~f~~~~~~--~K~~~~~~~~~~~il~~--~p~~~l~~~~~~~~-------~~~~~~~~~~~~~~~gi~~~rv~~~~ 748 (944)
.+..++.++.++ .|....+++++..+... .|+.++ ++|.+-. .......+...+.+.|+ .++|.|.|
T Consensus 477 pdkpvIL~VGRL~p~KGi~~LIeAf~~L~~l~~~~nL~L-IiG~gdd~d~l~~~~~~~l~~L~~li~~lgL-~g~V~FlG 554 (1050)
T TIGR02468 477 PRKPMILALARPDPKKNITTLVKAFGECRPLRELANLTL-IMGNRDDIDEMSSGSSSVLTSVLKLIDKYDL-YGQVAYPK 554 (1050)
T ss_pred CCCcEEEEEcCCccccCHHHHHHHHHHhHhhccCCCEEE-EEecCchhhhhhccchHHHHHHHHHHHHhCC-CCeEEecC
Confidence 344456666755 89999999999998653 345554 3443211 11234678888899999 59999999
Q ss_pred CccCcHHHHHhcccc----cEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhH--HHhhcCCcccc--cCCHH
Q 002273 749 LILLNHDHMQAYSLM----DISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVS--LLTKVGLKHLI--AKNED 819 (944)
Q Consensus 749 ~~~~~~~~~~~~~~~----Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~--~l~~~gl~~~v--~~~~~ 819 (944)
..+ ..+....|+.+ |||+-|.-+ +.|.|.+|||+||+|||+ +++|+. ++. -|...++ ..|++
T Consensus 555 ~v~-~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVA-------SdvGG~~EII~-~g~nGlLVdP~D~e 625 (1050)
T TIGR02468 555 HHK-QSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVA-------TKNGGPVDIHR-VLDNGLLVDPHDQQ 625 (1050)
T ss_pred CCC-HHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEE-------eCCCCcHHHhc-cCCcEEEECCCCHH
Confidence 876 56777788777 699887766 889999999999999999 777721 111 1223333 35899
Q ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHH
Q 002273 820 EYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRY 872 (944)
Q Consensus 820 ~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 872 (944)
++.+...++.+|++.++++++..+++.. .|++...++.+.+.|..+-.|.
T Consensus 626 aLA~AL~~LL~Dpelr~~m~~~gr~~v~---~FSWe~ia~~yl~~i~~~~~~~ 675 (1050)
T TIGR02468 626 AIADALLKLVADKQLWAECRQNGLKNIH---LFSWPEHCKTYLSRIASCRPRH 675 (1050)
T ss_pred HHHHHHHHHhhCHHHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999988863 3999999999999998775443
No 159
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.19 E-value=1.7e-09 Score=121.33 Aligned_cols=153 Identities=10% Similarity=0.111 Sum_probs=116.7
Q ss_pred CCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecC
Q 002273 690 NLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDT 769 (944)
Q Consensus 690 ~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~ 769 (944)
...|....+++++.++.. +.+|+++|.+.........+.+ ..++ .++|.|.|.++ ..+....+..+|+++-|
T Consensus 203 ~~~Kg~~~li~a~~~l~~---~~~l~ivG~~~~~~~~~~~~~~---~~~~-~~~V~~~g~~~-~~~~~~~~~~ad~~v~p 274 (363)
T cd04955 203 VPENNIDDLIEAFSKSNS---GKKLVIVGNADHNTPYGKLLKE---KAAA-DPRIIFVGPIY-DQELLELLRYAALFYLH 274 (363)
T ss_pred cccCCHHHHHHHHHhhcc---CceEEEEcCCCCcchHHHHHHH---HhCC-CCcEEEccccC-hHHHHHHHHhCCEEEeC
Confidence 457888889988887643 7899999875332233333322 4566 58999999987 57888899999999766
Q ss_pred CC--CCCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcc------cccCCHHHHHHHHHHHhcCHHHHHHHHHH
Q 002273 770 FP--YAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKH------LIAKNEDEYVQLALQLASDVTALANLRMS 841 (944)
Q Consensus 770 ~~--~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~------~v~~~~~~y~~~a~~l~~d~~~~~~~r~~ 841 (944)
.. .+.|.+.+|||++|+|||| ++++ |++| ++..+.+.+.+...+|.+|++.+.++++.
T Consensus 275 s~~~e~~~~~~~EAma~G~PvI~-------s~~~-------~~~e~~~~~g~~~~~~~~l~~~i~~l~~~~~~~~~~~~~ 340 (363)
T cd04955 275 GHSVGGTNPSLLEAMAYGCPVLA-------SDNP-------FNREVLGDKAIYFKVGDDLASLLEELEADPEEVSAMAKA 340 (363)
T ss_pred CccCCCCChHHHHHHHcCCCEEE-------ecCC-------ccceeecCCeeEecCchHHHHHHHHHHhCHHHHHHHHHH
Confidence 64 4678899999999999999 6665 4444 33344444899999999999999999999
Q ss_pred HHHHhhcCCCCChHHHHHHHHHHHH
Q 002273 842 LRDLMSKSPVCDGQNFALGLESTYR 866 (944)
Q Consensus 842 ~~~~~~~~~~~~~~~~~~~~e~~~~ 866 (944)
.++...+ .|+++.++.++++.|+
T Consensus 341 ~~~~~~~--~fs~~~~~~~~~~~y~ 363 (363)
T cd04955 341 ARERIRE--KYTWEKIADQYEELYK 363 (363)
T ss_pred HHHHHHH--hCCHHHHHHHHHHHhC
Confidence 8887654 4999999999999884
No 160
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=99.19 E-value=4.7e-10 Score=126.30 Aligned_cols=158 Identities=17% Similarity=0.183 Sum_probs=122.5
Q ss_pred EEEecC--CCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcc
Q 002273 684 TFGSFN--NLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYS 761 (944)
Q Consensus 684 ~f~~~~--~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~ 761 (944)
+++.+. ...|..+.+++++.++....|+.+|.+.|.+ .....+....+..|+ .++|.|.|.. .+....|+
T Consensus 206 ~i~~vgrl~~~K~~~~li~a~~~l~~~~~~~~l~i~G~g----~~~~~~~~~~~~~~~-~~~v~~~g~~---~~~~~~~~ 277 (372)
T cd04949 206 KIITVARLAPEKQLDQLIKAFAKVVKQVPDATLDIYGYG----DEEEKLKELIEELGL-EDYVFLKGYT---RDLDEVYQ 277 (372)
T ss_pred eEEEEEccCcccCHHHHHHHHHHHHHhCCCcEEEEEEeC----chHHHHHHHHHHcCC-cceEEEcCCC---CCHHHHHh
Confidence 344444 4689999999999999999999999999876 234556666788898 5899999853 46778889
Q ss_pred cccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccch--hHHHhhcCCcccccC--CHHHHHHHHHHHhcCHHHHH
Q 002273 762 LMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVG--VSLLTKVGLKHLIAK--NEDEYVQLALQLASDVTALA 836 (944)
Q Consensus 762 ~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~--~~~l~~~gl~~~v~~--~~~~y~~~a~~l~~d~~~~~ 836 (944)
.+|++++|..+ +.|.+.+|||++|+|||+ ++++ ..-+-.-|-..++.. |.+++.+....+.+|++.++
T Consensus 278 ~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~-------~~~~~g~~~~v~~~~~G~lv~~~d~~~la~~i~~ll~~~~~~~ 350 (372)
T cd04949 278 KAQLSLLTSQSEGFGLSLMEALSHGLPVIS-------YDVNYGPSEIIEDGENGYLVPKGDIEALAEAIIELLNDPKLLQ 350 (372)
T ss_pred hhhEEEecccccccChHHHHHHhCCCCEEE-------ecCCCCcHHHcccCCCceEeCCCcHHHHHHHHHHHHcCHHHHH
Confidence 99999999977 779999999999999999 4432 111222255556655 99999999999999999999
Q ss_pred HHHHHHHHHhhcCCCCChHHHHH
Q 002273 837 NLRMSLRDLMSKSPVCDGQNFAL 859 (944)
Q Consensus 837 ~~r~~~~~~~~~~~~~~~~~~~~ 859 (944)
.+++..++.. .-|+++.++.
T Consensus 351 ~~~~~a~~~~---~~~s~~~~~~ 370 (372)
T cd04949 351 KFSEAAYENA---ERYSEENVWE 370 (372)
T ss_pred HHHHHHHHHH---HHhhHHHHHh
Confidence 9999888763 2366666554
No 161
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.19 E-value=4.4e-10 Score=127.39 Aligned_cols=163 Identities=11% Similarity=0.080 Sum_probs=120.6
Q ss_pred eEEEecCC--CCcCCHHHH----HHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHH
Q 002273 683 ITFGSFNN--LAKITPKVL----QVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 756 (944)
Q Consensus 683 ~~f~~~~~--~~K~~~~~~----~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~ 756 (944)
.+++.+++ ..|..+.++ ++|..|.+..|+.+|+++|.+. . .. +++++. .++|.|+|.++ +.
T Consensus 225 ~~ilf~G~l~~~k~~~~l~~~~~~~~~~l~~~~p~~~l~ivG~g~----~-~~----~~~l~~-~~~V~~~G~v~---~~ 291 (397)
T TIGR03087 225 RVLVFTGAMDYWPNIDAVVWFAERVFPAVRARRPAAEFYIVGAKP----S-PA----VRALAA-LPGVTVTGSVA---DV 291 (397)
T ss_pred cEEEEEEecCCccCHHHHHHHHHHHHHHHHHHCCCcEEEEECCCC----h-HH----HHHhcc-CCCeEEeeecC---CH
Confidence 34444454 466666555 6788888889999999998652 1 11 233444 46899999875 45
Q ss_pred HHhcccccEEecCCCC--CCcccHHHhhhcCCcEEecCCCcccccchhHHHh-hcCCcccccCCHHHHHHHHHHHhcCHH
Q 002273 757 MQAYSLMDISLDTFPY--AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLT-KVGLKHLIAKNEDEYVQLALQLASDVT 833 (944)
Q Consensus 757 ~~~~~~~Di~Ld~~~~--~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~-~~gl~~~v~~~~~~y~~~a~~l~~d~~ 833 (944)
...|..+||++-|+.+ +.+++.+|||+||+|||+- +++..-+. .-|..-+|+.|.+++++...+|.+|++
T Consensus 292 ~~~~~~adv~v~Ps~~~eG~~~~~lEAma~G~PVV~t-------~~~~~~i~~~~~~g~lv~~~~~~la~ai~~ll~~~~ 364 (397)
T TIGR03087 292 RPYLAHAAVAVAPLRIARGIQNKVLEAMAMAKPVVAS-------PEAAEGIDALPGAELLVAADPADFAAAILALLANPA 364 (397)
T ss_pred HHHHHhCCEEEecccccCCcccHHHHHHHcCCCEEec-------CcccccccccCCcceEeCCCHHHHHHHHHHHHcCHH
Confidence 6778899999988754 4466899999999999994 33221121 123334567899999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 002273 834 ALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 867 (944)
Q Consensus 834 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 867 (944)
.+++++++.|+.+.+. |+++..++.+|+.|++
T Consensus 365 ~~~~~~~~ar~~v~~~--fsw~~~~~~~~~~l~~ 396 (397)
T TIGR03087 365 EREELGQAARRRVLQH--YHWPRNLARLDALLEQ 396 (397)
T ss_pred HHHHHHHHHHHHHHHh--CCHHHHHHHHHHHhcC
Confidence 9999999999887544 9999999999998853
No 162
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=99.19 E-value=1.5e-10 Score=129.38 Aligned_cols=263 Identities=18% Similarity=0.145 Sum_probs=163.8
Q ss_pred HHHHHHhHhCCccEEEecCCCCCCCchhhhccC--CcceeeecccCCCCC-----CCCCccEEEecCCCCCcccc---cc
Q 002273 579 KKVAAMVREDKIDILVELTGHTANNKLGMMACQ--PAPVQVTWIGYPNTT-----GLPTIDYRITDSLADPPETK---QK 648 (944)
Q Consensus 579 ~~~a~~i~~d~idilvdl~g~t~~~~~~~~a~r--~ApvQ~~~~G~p~t~-----g~~~~Dy~i~d~~~~p~~~~---~~ 648 (944)
..+.+.++..++||++--+.++. -+..++.+ -.|+-.++.|+.... .+...|.+++-.-....... ..
T Consensus 68 ~~l~~~~~~~~~dii~~~~~~~~--~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~vi~~s~~~~~~~~~~~~~ 145 (355)
T cd03819 68 ARLRRLIREEKVDIVHARSRAPA--WSAYLAARRTRPPFVTTVHGFYSVNFRYNAIMARGDRVIAVSNFIADHIRENYGV 145 (355)
T ss_pred HHHHHHHHHcCCCEEEECCCchh--HHHHHHHHhcCCCEEEEeCCchhhHHHHHHHHHhcCEEEEeCHHHHHHHHHhcCC
Confidence 45777889999999976443322 12222222 356655565554322 12345666542111001111 11
Q ss_pred cccceEEcCCCcc--ccCCCCCCCC----CCCCCCCCCCCeEEEecCC--CCcCCHHHHHHHHHHHhHcCCceEEEecCC
Q 002273 649 HVEELIRLPECFL--CYTPSPEAGP----VCPTPALTNGFITFGSFNN--LAKITPKVLQVWARILCAVPNSRLVVKCKP 720 (944)
Q Consensus 649 ~~e~~~~lp~~~~--~~~~~~~~~~----~~~~~~~~~~~~~f~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~ 720 (944)
..+++..+|+..- .|.+...... .+.....+++.++++..++ ..|..+.+++++..+....|+.+|+++|.+
T Consensus 146 ~~~k~~~i~ngi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~~~~~l~ivG~~ 225 (355)
T cd03819 146 DPDRIRVIPRGVDLDRFDPGAVPPERILALAREWPLPKGKPVILLPGRLTRWKGQEVFIEALARLKKDDPDVHLLIVGDA 225 (355)
T ss_pred ChhhEEEecCCccccccCccccchHHHHHHHHHcCCCCCceEEEEeeccccccCHHHHHHHHHHHHhcCCCeEEEEEECC
Confidence 2367777776321 0111100000 0011123456666766665 489999999999999888889999999876
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCC--CCCCcccHHHhhhcCCcEEecCCCcccc
Q 002273 721 FCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTF--PYAGTTTTCESLYMGVPCVTMAGSVHAH 798 (944)
Q Consensus 721 ~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~--~~~~~~t~~eal~~gvPvvt~~g~~~~~ 798 (944)
...+...+.+.+.+.+.|+ .++|.|.|. ..+....+..+|+++-|. +.+.|+|.+|||++|+|||+........
T Consensus 226 ~~~~~~~~~~~~~~~~~~~-~~~v~~~g~---~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~~~~e 301 (355)
T cd03819 226 QGRRFYYAELLELIKRLGL-QDRVTFVGH---CSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDHGGARE 301 (355)
T ss_pred cccchHHHHHHHHHHHcCC-cceEEEcCC---cccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCCCCcHH
Confidence 5555566777778888898 589999998 357788889999999887 3477999999999999999843221111
Q ss_pred cchhHHHhhcCCcccc--cCCHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhhcCCCCChH
Q 002273 799 NVGVSLLTKVGLKHLI--AKNEDEYVQLAL-QLASDVTALANLRMSLRDLMSKSPVCDGQ 855 (944)
Q Consensus 799 r~~~~~l~~~gl~~~v--~~~~~~y~~~a~-~l~~d~~~~~~~r~~~~~~~~~~~~~~~~ 855 (944)
++.. |...++ ..|++++++... .+..|++.+.++++..++.+... |+.+
T Consensus 302 -----~i~~-~~~g~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~a~~~~~~~--f~~~ 353 (355)
T cd03819 302 -----TVRP-GETGLLVPPGDAEALAQALDQILSLLPEGRAKMFAKARMCVETL--FSYD 353 (355)
T ss_pred -----HHhC-CCceEEeCCCCHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHh--hhhc
Confidence 1222 222333 368888888774 45558999999999998877533 5543
No 163
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.19 E-value=5.7e-10 Score=124.86 Aligned_cols=165 Identities=18% Similarity=0.118 Sum_probs=125.6
Q ss_pred CCCeEEEecCC--CCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHH
Q 002273 680 NGFITFGSFNN--LAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 757 (944)
Q Consensus 680 ~~~~~f~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~ 757 (944)
++.++|+.+++ ..|..+.+++++.++... |+.+|++.|.+. ....++ +. .++|.|.|.++ ..+..
T Consensus 195 ~~~~~i~~~G~~~~~k~~~~~i~~~~~l~~~-~~~~l~i~G~~~----~~~~~~------~~-~~~v~~~g~~~-~~~~~ 261 (364)
T cd03814 195 PDRPVLLYVGRLAPEKNLEALLDADLPLRRR-PPVRLVIVGDGP----ARARLE------AR-YPNVHFLGFLD-GEELA 261 (364)
T ss_pred CCCeEEEEEeccccccCHHHHHHHHHHhhhc-CCceEEEEeCCc----hHHHHh------cc-CCcEEEEeccC-HHHHH
Confidence 34455665554 478889999999999888 999999998652 222222 33 57899999866 67888
Q ss_pred HhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccc--cCCHHHHHHHHHHHhcCHHH
Q 002273 758 QAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLI--AKNEDEYVQLALQLASDVTA 834 (944)
Q Consensus 758 ~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v--~~~~~~y~~~a~~l~~d~~~ 834 (944)
..|..+|++|-|... +.|+|.+|||++|+|||+.....+...+ .. +-..++ ..|.+++++....+..|++.
T Consensus 262 ~~~~~~d~~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~~~~~i-----~~-~~~g~~~~~~~~~~l~~~i~~l~~~~~~ 335 (364)
T cd03814 262 AAYASADVFVFPSRTETFGLVVLEAMASGLPVVAPDAGGPADIV-----TD-GENGLLVEPGDAEAFAAALAALLADPEL 335 (364)
T ss_pred HHHHhCCEEEECcccccCCcHHHHHHHcCCCEEEcCCCCchhhh-----cC-CcceEEcCCCCHHHHHHHHHHHHcCHHH
Confidence 999999999988855 7799999999999999996644433222 22 122333 35677799999999999999
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 002273 835 LANLRMSLRDLMSKSPVCDGQNFALGLESTYR 866 (944)
Q Consensus 835 ~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 866 (944)
+.++....++.. .-|+++.+++.+++.|+
T Consensus 336 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 364 (364)
T cd03814 336 RRRMAARARAEA---ERRSWEAFLDNLLEAYR 364 (364)
T ss_pred HHHHHHHHHHHH---hhcCHHHHHHHHHHhhC
Confidence 999999888875 34899999999998873
No 164
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=99.19 E-value=2.2e-09 Score=118.89 Aligned_cols=312 Identities=12% Similarity=0.015 Sum_probs=171.8
Q ss_pred EEEeecCCC------ccCcHHHHHHhhhhhccCCcEEEEEEeccccCChhhHHHHHHHhhhCCceEeccC------CCHH
Q 002273 512 VIGYVSPDY------FTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYG------IDEK 579 (944)
Q Consensus 512 riGy~S~d~------~~h~v~~~~~~~l~~~d~~~fev~~y~~~~~~d~~t~~~~~~~~~~~~~~~~~~~------~~~~ 579 (944)
+|.++++.+ ....+..++..+...+.+.+.||++++......... ...... ...+..... ....
T Consensus 2 kI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~ 77 (335)
T cd03802 2 RIALVAPPREPVPPPAYGGTERVVAALTEGLVARGHEVTLFASGDSKTAAP--LVPVVP--EPLRLDAPGRDRAEAEALA 77 (335)
T ss_pred eEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcCceEEEEecCCCCcccc--eeeccC--CCcccccchhhHhhHHHHH
Confidence 577777765 233334555667676767788999987654321111 111000 011111000 0124
Q ss_pred HHHHHhHhCCccEEEecCCCCCCCchhhhccCCcceeeecccCCCCCCC------CCccEEEecCCCCCcccccccccce
Q 002273 580 KVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGL------PTIDYRITDSLADPPETKQKHVEEL 653 (944)
Q Consensus 580 ~~a~~i~~d~idilvdl~g~t~~~~~~~~a~r~ApvQ~~~~G~p~t~g~------~~~Dy~i~d~~~~p~~~~~~~~e~~ 653 (944)
.+.+.|...++||+.--+.... ......+-.|+-++..|.+..... ...|.+++-.-........ . .++
T Consensus 78 ~~~~~~~~~~~Divh~~~~~~~---~~~~~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~-~-~~~ 152 (335)
T cd03802 78 LAERALAAGDFDIVHNHSLHLP---LPFARPLPVPVVTTLHGPPDPELLKLYYAARPDVPFVSISDAQRRPWPP-L-PWV 152 (335)
T ss_pred HHHHHHhcCCCCEEEecCcccc---hhhhcccCCCEEEEecCCCCcccchHHHhhCcCCeEEEecHHHHhhccc-c-ccc
Confidence 5677888899999964322222 113334556777776665543211 2223333211100000001 1 455
Q ss_pred EEcCCCccccCCCCCCCCCCCCCCCCCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHH
Q 002273 654 IRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLST 733 (944)
Q Consensus 654 ~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~ 733 (944)
..+|+.. ++..-.+ .+ .....++|..--...|..+.++++..+ ++.+|++.|.+.. ...+...
T Consensus 153 ~vi~ngv---d~~~~~~----~~-~~~~~i~~~Gr~~~~Kg~~~li~~~~~-----~~~~l~i~G~~~~----~~~~~~~ 215 (335)
T cd03802 153 ATVHNGI---DLDDYPF----RG-PKGDYLLFLGRISPEKGPHLAIRAARR-----AGIPLKLAGPVSD----PDYFYRE 215 (335)
T ss_pred EEecCCc---ChhhCCC----CC-CCCCEEEEEEeeccccCHHHHHHHHHh-----cCCeEEEEeCCCC----HHHHHHH
Confidence 5666431 1111000 01 111223332222568888777776432 5789999887632 2223333
Q ss_pred HHHcC-CCCCcEEEccCccCcHHHHHhcccccEEecCCC--CCCcccHHHhhhcCCcEEecCCCcccccchhH-HHhhcC
Q 002273 734 LEQLG-LESLRVDLLPLILLNHDHMQAYSLMDISLDTFP--YAGTTTTCESLYMGVPCVTMAGSVHAHNVGVS-LLTKVG 809 (944)
Q Consensus 734 ~~~~g-i~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~--~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~-~l~~~g 809 (944)
..+.. + .++|.|.|.++ ..+....+..+|+++-|.. .+.|.+.+|||+||+|||+ +++|+. -+-.-|
T Consensus 216 ~~~~~~~-~~~v~~~G~~~-~~~~~~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~-------~~~~~~~e~i~~~ 286 (335)
T cd03802 216 IAPELLD-GPDIEYLGEVG-GAEKAELLGNARALLFPILWEEPFGLVMIEAMACGTPVIA-------FRRGAVPEVVEDG 286 (335)
T ss_pred HHHhccc-CCcEEEeCCCC-HHHHHHHHHhCcEEEeCCcccCCcchHHHHHHhcCCCEEE-------eCCCCchhheeCC
Confidence 33332 4 48999999987 5678889999999998874 5779999999999999999 555410 011113
Q ss_pred CcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 002273 810 LKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 866 (944)
Q Consensus 810 l~~~v~~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 866 (944)
...++..+.+++++....+..+.. +..++... ..|+++.++.++++.|+
T Consensus 287 ~~g~l~~~~~~l~~~l~~l~~~~~------~~~~~~~~--~~~s~~~~~~~~~~~y~ 335 (335)
T cd03802 287 VTGFLVDSVEELAAAVARADRLDR------AACRRRAE--RRFSAARMVDDYLALYR 335 (335)
T ss_pred CcEEEeCCHHHHHHHHHHHhccHH------HHHHHHHH--HhCCHHHHHHHHHHHhC
Confidence 344566678888888887765442 23333332 44999999999999884
No 165
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.19 E-value=1.4e-09 Score=123.55 Aligned_cols=175 Identities=16% Similarity=0.125 Sum_probs=132.2
Q ss_pred CCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCceEEEecCCCCC--HHHHHHHHHHHHHcCCCCCcEEEccCccCc
Q 002273 678 LTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCC--DSVRHRFLSTLEQLGLESLRVDLLPLILLN 753 (944)
Q Consensus 678 ~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~--~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~ 753 (944)
...+.++|+.+++. .|..+.+++++.++....|+.+|+++|++... ......+....+..|+ .++|.|.|.++ .
T Consensus 216 ~~~~~~~i~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~g~~~-~ 293 (398)
T cd03800 216 RDPDKPRILAVGRLDPRKGIDTLIRAYAELPELRERANLVIVGGPRDDILAMDEEELRELARELGV-IDRVDFPGRVS-R 293 (398)
T ss_pred cCCCCcEEEEEcccccccCHHHHHHHHHHHHHhCCCeEEEEEECCCCcchhhhhHHHHHHHHhcCC-CceEEEeccCC-H
Confidence 34455667777755 77889999999999988999999999865432 1223446667778888 48999999987 6
Q ss_pred HHHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCccccc--CCHHHHHHHHHHHhc
Q 002273 754 HDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQLAS 830 (944)
Q Consensus 754 ~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~--~~~~~y~~~a~~l~~ 830 (944)
.+....+..+|++|-|.-+ +.|.+.+|||++|+|||+-...... .++.. +-..++. .|++++++....+.+
T Consensus 294 ~~~~~~~~~adi~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~~~~-----e~i~~-~~~g~~~~~~~~~~l~~~i~~l~~ 367 (398)
T cd03800 294 EDLPALYRAADVFVNPALYEPFGLTALEAMACGLPVVATAVGGPR-----DIVVD-GVTGLLVDPRDPEALAAALRRLLT 367 (398)
T ss_pred HHHHHHHHhCCEEEecccccccCcHHHHHHhcCCCEEECCCCCHH-----HHccC-CCCeEEeCCCCHHHHHHHHHHHHh
Confidence 7889999999999987754 6689999999999999984322111 12222 1123333 489999999999999
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 002273 831 DVTALANLRMSLRDLMSKSPVCDGQNFALGLE 862 (944)
Q Consensus 831 d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e 862 (944)
|++.+..++...++...+. |+++.++..++
T Consensus 368 ~~~~~~~~~~~a~~~~~~~--~s~~~~~~~~~ 397 (398)
T cd03800 368 DPALRRRLSRAGLRRARAR--YTWERVAARLL 397 (398)
T ss_pred CHHHHHHHHHHHHHHHHHh--CCHHHHHHHHh
Confidence 9999999999988876434 89998888765
No 166
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=99.18 E-value=3.8e-10 Score=129.55 Aligned_cols=164 Identities=7% Similarity=0.013 Sum_probs=127.6
Q ss_pred EEEecC--CCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcc
Q 002273 684 TFGSFN--NLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYS 761 (944)
Q Consensus 684 ~f~~~~--~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~ 761 (944)
++..++ ...|..+.+++++..+.+..|+.+|.++|.+ ..++.+++.+++.|+ .++|.|.|.. +....|+
T Consensus 321 ~il~vGrl~~~Kg~~~li~A~~~l~~~~p~~~l~i~G~G----~~~~~l~~~i~~~~l-~~~V~f~G~~----~~~~~~~ 391 (500)
T TIGR02918 321 SIITASRLAKEKHIDWLVKAVVKAKKSVPELTFDIYGEG----GEKQKLQKIINENQA-QDYIHLKGHR----NLSEVYK 391 (500)
T ss_pred EEEEEeccccccCHHHHHHHHHHHHhhCCCeEEEEEECc----hhHHHHHHHHHHcCC-CCeEEEcCCC----CHHHHHH
Confidence 344444 4589999999999999999999999999876 456788888899999 5899999975 3445678
Q ss_pred cccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccch--hHHHhhcCCcccccC------C----HHHHHHHHHHH
Q 002273 762 LMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVG--VSLLTKVGLKHLIAK------N----EDEYVQLALQL 828 (944)
Q Consensus 762 ~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~--~~~l~~~gl~~~v~~------~----~~~y~~~a~~l 828 (944)
.+|+++-|.-+ +.|.|++|||++|+|||+ ++++ ..=+-.-|...++.. | .+++.++.++|
T Consensus 392 ~adv~v~pS~~Egfgl~~lEAma~G~PVI~-------~dv~~G~~eiI~~g~nG~lv~~~~~~~d~~~~~~~la~~I~~l 464 (500)
T TIGR02918 392 DYELYLSASTSEGFGLTLMEAVGSGLGMIG-------FDVNYGNPTFIEDNKNGYLIPIDEEEDDEDQIITALAEKIVEY 464 (500)
T ss_pred hCCEEEEcCccccccHHHHHHHHhCCCEEE-------ecCCCCCHHHccCCCCEEEEeCCccccchhHHHHHHHHHHHHH
Confidence 89999888755 789999999999999999 5553 211222266666654 2 77888888888
Q ss_pred hcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 002273 829 ASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 867 (944)
Q Consensus 829 ~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 867 (944)
.+ ++.+.++++..++.. .-|+++..+..++++++.
T Consensus 465 l~-~~~~~~~~~~a~~~a---~~fs~~~v~~~w~~ll~~ 499 (500)
T TIGR02918 465 FN-SNDIDAFHEYSYQIA---EGFLTANIIEKWKKLVRE 499 (500)
T ss_pred hC-hHHHHHHHHHHHHHH---HhcCHHHHHHHHHHHHhh
Confidence 85 557889999888753 349999999999988865
No 167
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.18 E-value=7e-10 Score=102.81 Aligned_cols=105 Identities=15% Similarity=0.107 Sum_probs=100.6
Q ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 002273 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (944)
Q Consensus 45 ~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (944)
+..-+.++..|..++..|++++|...|+-+...+|.+...|+.+|.|+..+|++++|+..|.+++.++|+++..++++|.
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~ 111 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE 111 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence 55788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCC
Q 002273 125 LYKDEGRLVEAAESYHKALSADPSY 149 (944)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~p~~ 149 (944)
+++..|+.+.|++.|+.++......
T Consensus 112 c~L~lG~~~~A~~aF~~Ai~~~~~~ 136 (157)
T PRK15363 112 CYLACDNVCYAIKALKAVVRICGEV 136 (157)
T ss_pred HHHHcCCHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999887443
No 168
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=99.18 E-value=2.7e-10 Score=129.08 Aligned_cols=166 Identities=13% Similarity=0.185 Sum_probs=125.2
Q ss_pred CCCeEEEecCC--CCcCCHHHHHHHHHHHhHcCCceE--EEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHH
Q 002273 680 NGFITFGSFNN--LAKITPKVLQVWARILCAVPNSRL--VVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHD 755 (944)
Q Consensus 680 ~~~~~f~~~~~--~~K~~~~~~~~~~~il~~~p~~~l--~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~ 755 (944)
++.++|+++++ ..|..+.+++++.++....|+..+ .++|++ .....+++.++..+. .++|.|+|.++ ..+
T Consensus 228 ~~~~~il~~Grl~~~Kg~~~li~a~~~l~~~~p~~~l~~~iiG~g----~~~~~l~~~~~~~~~-~~~V~f~G~v~-~~e 301 (407)
T cd04946 228 DDTLRIVSCSYLVPVKRVDLIIKALAALAKARPSIKIKWTHIGGG----PLEDTLKELAESKPE-NISVNFTGELS-NSE 301 (407)
T ss_pred CCCEEEEEeeccccccCHHHHHHHHHHHHHhCCCceEEEEEEeCc----hHHHHHHHHHHhcCC-CceEEEecCCC-hHH
Confidence 44556666665 478899999999999998886544 455654 455677777777777 58999999987 577
Q ss_pred HHHhccc--ccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhH--HHhhcCCcc-ccc--CCHHHHHHHHHH
Q 002273 756 HMQAYSL--MDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVS--LLTKVGLKH-LIA--KNEDEYVQLALQ 827 (944)
Q Consensus 756 ~~~~~~~--~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~--~l~~~gl~~-~v~--~~~~~y~~~a~~ 827 (944)
....|.. +|+++-|..+ +.+.+.+|||++|+|||+ +++|+. ++.. |-.. ++. .|++++++...+
T Consensus 302 ~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIa-------s~vgg~~e~i~~-~~~G~l~~~~~~~~~la~~I~~ 373 (407)
T cd04946 302 VYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIA-------TNVGGTPEIVDN-GGNGLLLSKDPTPNELVSSLSK 373 (407)
T ss_pred HHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEe-------CCCCCcHHHhcC-CCcEEEeCCCCCHHHHHHHHHH
Confidence 7777754 7898777755 779999999999999999 667611 1111 2112 232 378999999999
Q ss_pred HhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHH
Q 002273 828 LASDVTALANLRMSLRDLMSKSPVCDGQNFALGL 861 (944)
Q Consensus 828 l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 861 (944)
+.+|++.+.+++++.|+.+... |+.+...+.+
T Consensus 374 ll~~~~~~~~m~~~ar~~~~~~--f~~~~~~~~~ 405 (407)
T cd04946 374 FIDNEEEYQTMREKAREKWEEN--FNASKNYREF 405 (407)
T ss_pred HHhCHHHHHHHHHHHHHHHHHH--cCHHHhHHHh
Confidence 9999999999999999988644 8888776654
No 169
>PLN02501 digalactosyldiacylglycerol synthase
Probab=99.18 E-value=1.9e-10 Score=129.81 Aligned_cols=260 Identities=11% Similarity=-0.006 Sum_probs=157.6
Q ss_pred CHHHHHHHhHhCCccEEEecC-CCCCCCchh-hhccCCcceeeec----ccCCCCCCCCCccE--------EE----ecC
Q 002273 577 DEKKVAAMVREDKIDILVELT-GHTANNKLG-MMACQPAPVQVTW----IGYPNTTGLPTIDY--------RI----TDS 638 (944)
Q Consensus 577 ~~~~~a~~i~~d~idilvdl~-g~t~~~~~~-~~a~r~ApvQ~~~----~G~p~t~g~~~~Dy--------~i----~d~ 638 (944)
+..++.+.|.+.++||++=-+ +|-.....+ ..|.|.-||-.++ ..|....|+..+-- ++ +|.
T Consensus 422 p~gdI~~~L~~f~PDVVHLatP~~LGw~~~Glr~ArKl~PVVasyHTny~eYl~~y~~g~L~~~llk~l~~~v~r~hcD~ 501 (794)
T PLN02501 422 PAGDTSQFIPSKDADIAILEEPEHLNWYHHGKRWTDKFNHVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCHK 501 (794)
T ss_pred chHHHHHHhhccCCCEEEECCchhhccHHHHHHHHHHcCCeEEEEeCCcHHHHhHhcchhHHHHHHHHHHHHHHHhhCCE
Confidence 457799999999999986221 222211111 2344555654443 22222222222111 11 455
Q ss_pred CCCCcccccccccceEEcCCCcc---ccCCCCCCCCCCCCCCC---CCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCc
Q 002273 639 LADPPETKQKHVEELIRLPECFL---CYTPSPEAGPVCPTPAL---TNGFITFGSFNNLAKITPKVLQVWARILCAVPNS 712 (944)
Q Consensus 639 ~~~p~~~~~~~~e~~~~lp~~~~---~~~~~~~~~~~~~~~~~---~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~ 712 (944)
++.|.+....+...++...+ ++ .|.|....... ...++ +.+ +.|..==...|....++++|..+....|+.
T Consensus 502 VIaPS~atq~L~~~vI~nVn-GVDte~F~P~~r~~~~-r~lgi~~~~kg-iLfVGRLa~EKGld~LLeAla~L~~~~pnv 578 (794)
T PLN02501 502 VLRLSAATQDLPKSVICNVH-GVNPKFLKIGEKVAEE-RELGQQAFSKG-AYFLGKMVWAKGYRELIDLLAKHKNELDGF 578 (794)
T ss_pred EEcCCHHHHHhcccceeecc-cccccccCCcchhHHH-HhcCCccccCc-eEEEEcccccCCHHHHHHHHHHHHhhCCCe
Confidence 66665544433333333222 22 13333221111 11122 223 334332245999999999999999989999
Q ss_pred eEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEec
Q 002273 713 RLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTM 791 (944)
Q Consensus 713 ~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~ 791 (944)
+|+|+|.| +.++.+++.+.++|+ +|.|+|.... ....|+.+|||+-|..+ +.|++++|||+||+|||+-
T Consensus 579 rLvIVGDG----P~reeLe~la~eLgL---~V~FLG~~dd---~~~lyasaDVFVlPS~sEgFGlVlLEAMA~GlPVVAT 648 (794)
T PLN02501 579 NLDVFGNG----EDAHEVQRAAKRLDL---NLNFLKGRDH---ADDSLHGYKVFINPSISDVLCTATAEALAMGKFVVCA 648 (794)
T ss_pred EEEEEcCC----ccHHHHHHHHHHcCC---EEEecCCCCC---HHHHHHhCCEEEECCCcccchHHHHHHHHcCCCEEEe
Confidence 99999877 567788888888888 3899988542 22567889999888766 7799999999999999983
Q ss_pred CCCcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHH
Q 002273 792 AGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLEST 864 (944)
Q Consensus 792 ~g~~~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~ 864 (944)
+++..-.-.-|-..++..|.+++++.+.++..|++.+...++ + .-++++.++..|++.
T Consensus 649 -------d~pG~e~V~~g~nGll~~D~EafAeAI~~LLsd~~~rl~~~a----~----~~~SWeAaadrLle~ 706 (794)
T PLN02501 649 -------DHPSNEFFRSFPNCLTYKTSEDFVAKVKEALANEPQPLTPEQ----R----YNLSWEAATQRFMEY 706 (794)
T ss_pred -------cCCCCceEeecCCeEecCCHHHHHHHHHHHHhCchhhhHHHH----H----hhCCHHHHHHHHHHh
Confidence 333111000133345668999999999999998864322221 1 247888888877764
No 170
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=99.18 E-value=1.3e-09 Score=122.12 Aligned_cols=168 Identities=18% Similarity=0.122 Sum_probs=123.9
Q ss_pred CCeEEEecCC--CCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHH
Q 002273 681 GFITFGSFNN--LAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 758 (944)
Q Consensus 681 ~~~~f~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 758 (944)
+.++++.+++ ..|..+.+++++..+....|+.+|.+.|.+... .......+++.+. .++|.|.|.++ ..+...
T Consensus 194 ~~~~i~~~G~~~~~K~~~~~l~~~~~~~~~~~~~~l~i~G~~~~~---~~~~~~~~~~~~~-~~~v~~~g~~~-~~~~~~ 268 (365)
T cd03809 194 PRPYFLYVGTIEPRKNLERLLEAFARLPAKGPDPKLVIVGKRGWL---NEELLARLRELGL-GDRVRFLGYVS-DEELAA 268 (365)
T ss_pred CCCeEEEeCCCccccCHHHHHHHHHHHHHhcCCCCEEEecCCccc---cHHHHHHHHHcCC-CCeEEECCCCC-hhHHHH
Confidence 3444555554 478899999999999999888999998764322 1222233356777 68999999987 578999
Q ss_pred hcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhcCHHHHHH
Q 002273 759 AYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALAN 837 (944)
Q Consensus 759 ~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~l~~d~~~~~~ 837 (944)
.+..+|++|-|.-+ +.|.+.+|||++|+|||+-....+..-++ ..|+ -+...|.+++++....+.+|++.+..
T Consensus 269 ~~~~~d~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~~-----~~~~-~~~~~~~~~~~~~i~~l~~~~~~~~~ 342 (365)
T cd03809 269 LYRGARAFVFPSLYEGFGLPVLEAMACGTPVIASNISSLPEVAG-----DAAL-YFDPLDPEALAAAIERLLEDPALREE 342 (365)
T ss_pred HHhhhhhhcccchhccCCCCHHHHhcCCCcEEecCCCCccceec-----Ccee-eeCCCCHHHHHHHHHHHhcCHHHHHH
Confidence 99999999988755 67899999999999999943322222111 1010 12356899999999999999999999
Q ss_pred HHHHHHHHhhcCCCCChHHHHHHHH
Q 002273 838 LRMSLRDLMSKSPVCDGQNFALGLE 862 (944)
Q Consensus 838 ~r~~~~~~~~~~~~~~~~~~~~~~e 862 (944)
+++..++.+ ..|+++.+++.+.
T Consensus 343 ~~~~~~~~~---~~~sw~~~~~~~~ 364 (365)
T cd03809 343 LRERGLARA---KRFSWEKTARRTL 364 (365)
T ss_pred HHHHHHHHH---HhCCHHHHHHHHh
Confidence 999888543 3389999888764
No 171
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=99.17 E-value=5e-10 Score=131.35 Aligned_cols=173 Identities=14% Similarity=0.118 Sum_probs=131.0
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCceEEEecCCCC-----C-H--HHHHHHHHHHHHcCCCCCcEEEccCc
Q 002273 681 GFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFC-----C-D--SVRHRFLSTLEQLGLESLRVDLLPLI 750 (944)
Q Consensus 681 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~-----~-~--~~~~~~~~~~~~~gi~~~rv~~~~~~ 750 (944)
+..++++.+|+ .|..+.+++++.++....+++.|+|+|++.. + + ...+++.+.+.+.|+ .++|.|+|..
T Consensus 549 ~kpiIl~VGRL~~~KGid~LIeA~~~l~~l~~~~~LVIVGGg~~~~~s~d~ee~~~i~~L~~la~~~gL-~g~V~flG~~ 627 (784)
T TIGR02470 549 NKPIIFSMARLDRVKNLTGLVECYGRSPKLRELVNLVVVAGKLDAKESKDREEQAEIEKMHNLIDQYQL-HGQIRWIGAQ 627 (784)
T ss_pred CCcEEEEEeCCCccCCHHHHHHHHHHhHhhCCCeEEEEEeCCcccccccchhHHHHHHHHHHHHHHhCC-CCeEEEccCc
Confidence 44457777765 7999999999988765557899999986532 1 1 244678888999999 5999999975
Q ss_pred cCcH---HHHHhc-ccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccc----------c
Q 002273 751 LLNH---DHMQAY-SLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLI----------A 815 (944)
Q Consensus 751 ~~~~---~~~~~~-~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v----------~ 815 (944)
.... ++...+ +.+|||+-|.-| +.|.|.+|||+||+|||+ +++| |++|.| .
T Consensus 628 ~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVA-------T~~G-------G~~EiV~dg~tGfLVdp 693 (784)
T TIGR02470 628 LNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFA-------TRFG-------GPLEIIQDGVSGFHIDP 693 (784)
T ss_pred CCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEE-------cCCC-------CHHHHhcCCCcEEEeCC
Confidence 3222 333332 346899877765 889999999999999999 8888 555544 3
Q ss_pred CCHHHHHHHHHHHh----cCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH--HHHH
Q 002273 816 KNEDEYVQLALQLA----SDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR--NMWH 870 (944)
Q Consensus 816 ~~~~~y~~~a~~l~----~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~--~~~~ 870 (944)
.|++++.+...++. +|++.+.++++..++++... |+++.+++.+.+... ..|.
T Consensus 694 ~D~eaLA~aL~~ll~kll~dp~~~~~ms~~a~~rV~~~--FSW~~~A~~ll~l~~~~~~~~ 752 (784)
T TIGR02470 694 YHGEEAAEKIVDFFEKCDEDPSYWQKISQGGLQRIYEK--YTWKIYSERLLTLAGIYGFWK 752 (784)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHhhhhHhh
Confidence 47888888877654 79999999999998887544 999999999998875 4674
No 172
>PLN00142 sucrose synthase
Probab=99.17 E-value=6.1e-10 Score=130.60 Aligned_cols=180 Identities=14% Similarity=0.055 Sum_probs=131.4
Q ss_pred CeEEEecCCC--CcCCHHHHHHHHHHHhHcCCceEEEecCCCC-----CHH---HHHHHHHHHHHcCCCCCcEEEccCcc
Q 002273 682 FITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFC-----CDS---VRHRFLSTLEQLGLESLRVDLLPLIL 751 (944)
Q Consensus 682 ~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~-----~~~---~~~~~~~~~~~~gi~~~rv~~~~~~~ 751 (944)
..++++++|+ .|..+.+++++.++.+..|+++|+++|++.. ... ...++.+.+.+.|+ .++|.|+|...
T Consensus 573 kpvIl~VGRL~~~KGid~LIeA~a~l~~l~~~~~LVIVGgg~d~~~s~d~ee~~el~~L~~La~~lgL-~~~V~flG~~~ 651 (815)
T PLN00142 573 KPIIFSMARLDRVKNLTGLVEWYGKNKRLRELVNLVVVGGFIDPSKSKDREEIAEIKKMHSLIEKYNL-KGQFRWIAAQT 651 (815)
T ss_pred CcEEEEEecCcccCCHHHHHHHHHHHHHhCCCcEEEEEECCccccccccHHHHHHHHHHHHHHHHcCC-CCcEEEcCCcC
Confidence 3457777766 7889999999999877778999999986521 111 23567788899999 59999998643
Q ss_pred C---cHHHHHhcc-cccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhHHHhh--cCCcccc--cCCHHHHH
Q 002273 752 L---NHDHMQAYS-LMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTK--VGLKHLI--AKNEDEYV 822 (944)
Q Consensus 752 ~---~~~~~~~~~-~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~--~gl~~~v--~~~~~~y~ 822 (944)
+ ..+....+. .+|||+-|.-| +.|.|.+|||+||+|||+ +++|+ +-.. -|...++ ..|.+++.
T Consensus 652 ~~~~~~eLyr~iadaaDVfVlPS~~EgFGLvvLEAMA~GlPVVA-------TdvGG-~~EIV~dG~tG~LV~P~D~eaLA 723 (815)
T PLN00142 652 NRVRNGELYRYIADTKGAFVQPALYEAFGLTVVEAMTCGLPTFA-------TCQGG-PAEIIVDGVSGFHIDPYHGDEAA 723 (815)
T ss_pred CcccHHHHHHHHHhhCCEEEeCCcccCCCHHHHHHHHcCCCEEE-------cCCCC-HHHHhcCCCcEEEeCCCCHHHHH
Confidence 2 245555454 57999887766 789999999999999999 77772 1111 1333333 34788887
Q ss_pred HHHHH----HhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH--HHHHHHh
Q 002273 823 QLALQ----LASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR--NMWHRYC 873 (944)
Q Consensus 823 ~~a~~----l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~ 873 (944)
+.... +.+|++.+.++++..++++.+ .|+++.++..+++.-. ..| +|.
T Consensus 724 ~aI~~lLekLl~Dp~lr~~mg~~Ar~rv~e--~FSWe~~A~rll~L~~~~~~~-~~~ 777 (815)
T PLN00142 724 NKIADFFEKCKEDPSYWNKISDAGLQRIYE--CYTWKIYAERLLTLGGVYGFW-KYV 777 (815)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHhhcchh-hhc
Confidence 77654 458999999999999888754 4999999999999764 356 344
No 173
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=99.17 E-value=5.2e-10 Score=114.40 Aligned_cols=209 Identities=20% Similarity=0.229 Sum_probs=150.1
Q ss_pred CCccEEEecCCCCCccc---ccccccceEEcCCCcc--ccCCCCCCCCCCCCCCCCCCCeEEEecCCC--CcCCHHHHHH
Q 002273 629 PTIDYRITDSLADPPET---KQKHVEELIRLPECFL--CYTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVLQV 701 (944)
Q Consensus 629 ~~~Dy~i~d~~~~p~~~---~~~~~e~~~~lp~~~~--~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~ 701 (944)
..+|-.|.=.+..-+.+ ...-.+++..+|+.-. .|.|.+.. ..+++.++.-..+|+ .|..+-.+.+
T Consensus 144 ~~id~~IcVshtskentvlr~~L~p~kvsvIPnAv~~~~f~P~~~~-------~~S~~i~~ivv~sRLvyrKGiDll~~i 216 (426)
T KOG1111|consen 144 ANIDRIICVSHTSKENTVLRGALAPAKVSVIPNAVVTHTFTPDAAD-------KPSADIITIVVASRLVYRKGIDLLLEI 216 (426)
T ss_pred cCCCcEEEEeecCCCceEEEeccCHhHeeeccceeeccccccCccc-------cCCCCeeEEEEEeeeeeccchHHHHHH
Confidence 44555553333333332 2334478888887432 24442211 123343566666676 8999999999
Q ss_pred HHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCC-CCCCcccHHH
Q 002273 702 WARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTF-PYAGTTTTCE 780 (944)
Q Consensus 702 ~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~-~~~~~~t~~e 780 (944)
-.+|-+..|+.++++.|+| +-+..+++.++++-+ .+||.|+|.++ +++.-..|..-||||.|. ....|++.+|
T Consensus 217 Ip~vc~~~p~vrfii~GDG----Pk~i~lee~lEk~~l-~~rV~~lG~v~-h~~Vr~vl~~G~IFlntSlTEafc~~ivE 290 (426)
T KOG1111|consen 217 IPSVCDKHPEVRFIIIGDG----PKRIDLEEMLEKLFL-QDRVVMLGTVP-HDRVRDVLVRGDIFLNTSLTEAFCMVIVE 290 (426)
T ss_pred HHHHHhcCCCeeEEEecCC----cccchHHHHHHHhhc-cCceEEecccc-hHHHHHHHhcCcEEeccHHHHHHHHHHHH
Confidence 9999999999999999877 667778888888888 69999999998 789999999999999999 4588999999
Q ss_pred hhhcCCcEEecCCCcccccchhHHHhhcCCcccccCC--------HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCC
Q 002273 781 SLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKN--------EDEYVQLALQLASDVTALANLRMSLRDLMSKSPVC 852 (944)
Q Consensus 781 al~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~~--------~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~ 852 (944)
|+.||+|||+ +||| |+||.+..| +++.++....-.+.. ...-....+++ ...+
T Consensus 291 AaScGL~VVs-------TrVG-------GIpeVLP~d~i~~~~~~~~dl~~~v~~ai~~~---~~~p~~~h~~v--~~~y 351 (426)
T KOG1111|consen 291 AASCGLPVVS-------TRVG-------GIPEVLPEDMITLGEPGPDDLVGAVEKAITKL---RTLPLEFHDRV--KKMY 351 (426)
T ss_pred HHhCCCEEEE-------eecC-------CccccCCccceeccCCChHHHHHHHHHHHHHh---ccCchhHHHHH--HHhc
Confidence 9999999999 9999 999977554 555554444333221 11122234454 4569
Q ss_pred ChHHHHHHHHHHHHHHH
Q 002273 853 DGQNFALGLESTYRNMW 869 (944)
Q Consensus 853 ~~~~~~~~~e~~~~~~~ 869 (944)
+|+..++.-|+.|.++-
T Consensus 352 ~w~dVa~rTekvy~r~~ 368 (426)
T KOG1111|consen 352 SWKDVAERTEKVYDRAA 368 (426)
T ss_pred cHHHHHHHHHHHHHHHh
Confidence 99999999999997653
No 174
>PLN02316 synthase/transferase
Probab=99.16 E-value=7.1e-10 Score=133.14 Aligned_cols=171 Identities=16% Similarity=0.080 Sum_probs=132.3
Q ss_pred CCCC-CCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCC-CCcEEEccCcc
Q 002273 676 PALT-NGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLE-SLRVDLLPLIL 751 (944)
Q Consensus 676 ~~~~-~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~-~~rv~~~~~~~ 751 (944)
.+++ .+.++++++.|+ .|..+.+++++.+++. ++.+|+|+|.+- +......|++.+.++|+. ++||.|.+...
T Consensus 833 lGL~~~d~plVg~VGRL~~qKGvdlLi~Al~~ll~--~~~qlVIvG~Gp-d~~~e~~l~~La~~Lg~~~~~rV~f~g~~d 909 (1036)
T PLN02316 833 LGLKQADLPLVGIITRLTHQKGIHLIKHAIWRTLE--RNGQVVLLGSAP-DPRIQNDFVNLANQLHSSHHDRARLCLTYD 909 (1036)
T ss_pred hCCCcccCeEEEEEeccccccCHHHHHHHHHHHhh--cCcEEEEEeCCC-CHHHHHHHHHHHHHhCccCCCeEEEEecCC
Confidence 3455 366789999977 7999999999999986 579999988652 335677888888888885 58999987643
Q ss_pred CcHHHH--HhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccccC------------
Q 002273 752 LNHDHM--QAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK------------ 816 (944)
Q Consensus 752 ~~~~~~--~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~------------ 816 (944)
+.+ ..|..+||||-|+-| +.|.|.+|||.+|+|+|+ +++| |++|.|.+
T Consensus 910 ---e~lah~iyaaADiflmPS~~EP~GLvqLEAMa~GtppVv-------s~vG-------GL~DtV~d~d~~~~~~~~~g 972 (1036)
T PLN02316 910 ---EPLSHLIYAGADFILVPSIFEPCGLTQLTAMRYGSIPVV-------RKTG-------GLFDTVFDVDHDKERAQAQG 972 (1036)
T ss_pred ---HHHHHHHHHhCcEEEeCCcccCccHHHHHHHHcCCCeEE-------EcCC-------CcHhhccccccccccccccc
Confidence 332 588999999988866 889999999999998887 7777 77776633
Q ss_pred -----------CHHHHHHHHHHHhcC-HHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 002273 817 -----------NEDEYVQLALQLASD-VTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNM 868 (944)
Q Consensus 817 -----------~~~~y~~~a~~l~~d-~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 868 (944)
|++++.....++..+ ++.+..+++..+..|. .-|++.+.++.++++|+.+
T Consensus 973 ~~~tGflf~~~d~~aLa~AL~raL~~~~~~~~~~~~~~r~~m~--~dFSW~~~A~~Y~~LY~~a 1034 (1036)
T PLN02316 973 LEPNGFSFDGADAAGVDYALNRAISAWYDGRDWFNSLCKRVME--QDWSWNRPALDYMELYHSA 1034 (1036)
T ss_pred cCCceEEeCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH--hhCCHHHHHHHHHHHHHHH
Confidence 577777777776665 3445556777777775 4499999999999999875
No 175
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.14 E-value=8.5e-09 Score=102.54 Aligned_cols=361 Identities=16% Similarity=0.071 Sum_probs=236.7
Q ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 002273 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (944)
Q Consensus 46 ~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (944)
.+...+-.+|.+|+...+|..|..+|++.-...|+.....+..+..+++.+.+..|+.........+.-.......-+.+
T Consensus 42 ~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAI 121 (459)
T KOG4340|consen 42 RSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAI 121 (459)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 35567788999999999999999999999999999999999999999999999999998877654322223455556777
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 002273 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM 205 (944)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 205 (944)
.+..+++..+....++. |...+ +....+.|.+.++.|++++|++-|+.+++...-++-.-++++.++++.+
T Consensus 122 kYse~Dl~g~rsLveQl----p~en~-----Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~ 192 (459)
T KOG4340|consen 122 KYSEGDLPGSRSLVEQL----PSENE-----ADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSR 192 (459)
T ss_pred hcccccCcchHHHHHhc----cCCCc-----cchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhh
Confidence 78888888887776654 32111 3357888999999999999999999999999989999999999999999
Q ss_pred CHHHHHHHHHHHHHh----CCC-------------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 002273 206 QYDTALGCYEKAALE----RPM-------------------------YAEAYCNMGVIYKNRGDLESAIACYERCLAVSP 256 (944)
Q Consensus 206 ~~~~A~~~~~~al~~----~p~-------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 256 (944)
+++.|+++..++++. .|. -.+++...+.++++.++++.|.+.+..+--...
T Consensus 193 qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE 272 (459)
T KOG4340|consen 193 QYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAE 272 (459)
T ss_pred hHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCccc
Confidence 999999998888763 232 124667778889999999998876544321111
Q ss_pred --CcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCc-h---hHHHhhhcCCHHHHHHHHHHHHHhCCCC-----HHH
Q 002273 257 --NFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQS-P---FFELVKLEGDINQGVAYYKKALYYNWHY-----ADA 325 (944)
Q Consensus 257 --~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~-~---~~~l~~~~~~~~~A~~~~~~al~~~p~~-----~~~ 325 (944)
-++....+++..-.... .......+.+.....+++. . +.-++.+..-++-|...+ ..+|+. ...
T Consensus 273 ~elDPvTLHN~Al~n~~~~-p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvL----AEn~~lTyk~L~~Y 347 (459)
T KOG4340|consen 273 EELDPVTLHNQALMNMDAR-PTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVL----AENAHLTYKFLTPY 347 (459)
T ss_pred ccCCchhhhHHHHhcccCC-ccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHH----hhCcchhHHHhhHH
Confidence 13445555554433221 1111122222222222333 2 334555665666665544 333432 122
Q ss_pred HHHHHHHHHH-cCChHHHHHHHHHHHhhCCCCHHHHHHHH-HHHHH--CC---CHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 002273 326 MYNLGVAYGE-MLKFDMAIVFYELAFHFNPHCAEACNNLG-VIYKD--RD---NLDKAVECYQMALSIKPNFSQSLNNLG 398 (944)
Q Consensus 326 ~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la-~~~~~--~g---~~~~A~~~~~~al~~~p~~~~~~~~la 398 (944)
.+.+-..+.. .-..++|.+-+...-..- ..-+..++ .+... .+ ...+|++.|++++++. ..+....+
T Consensus 348 ly~LLdaLIt~qT~pEea~KKL~~La~~l---~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~A 421 (459)
T KOG4340|consen 348 LYDLLDALITCQTAPEEAFKKLDGLAGML---TEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQA 421 (459)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 3333333332 335566665555443221 11111111 11111 11 2345566666666652 45677889
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 002273 399 VVYTVQGKMDAAAEMIEKAIAANPTYAE 426 (944)
Q Consensus 399 ~~~~~~g~~~~A~~~l~~al~~~p~~~~ 426 (944)
++|....+|..+.+.|++..+.-.++..
T Consensus 422 kiyW~~~Dy~~vEk~Fr~SvefC~ehd~ 449 (459)
T KOG4340|consen 422 KIYWNLEDYPMVEKIFRKSVEFCNDHDV 449 (459)
T ss_pred HhhccccccHHHHHHHHHHHhhhcccce
Confidence 9999999999999999999887655433
No 176
>PLN02846 digalactosyldiacylglycerol synthase
Probab=99.14 E-value=5e-10 Score=125.12 Aligned_cols=201 Identities=12% Similarity=0.009 Sum_probs=135.0
Q ss_pred ecCCCCCcccccccccceEEcCCCccc---cCCCCCCCCCCCCCCCCCCC--eEEEecCCC--CcCCHHHHHHHHHHHhH
Q 002273 636 TDSLADPPETKQKHVEELIRLPECFLC---YTPSPEAGPVCPTPALTNGF--ITFGSFNNL--AKITPKVLQVWARILCA 708 (944)
Q Consensus 636 ~d~~~~p~~~~~~~~e~~~~lp~~~~~---~~~~~~~~~~~~~~~~~~~~--~~f~~~~~~--~K~~~~~~~~~~~il~~ 708 (944)
+|.++.|......+.+..+..+ .++. |.|.... ....+. +++. .++...+|+ .|..+.+++++.+|.+.
T Consensus 181 ~d~vi~pS~~~~~l~~~~i~~v-~GVd~~~f~~~~~~--~~~~~~-~~~~~~~~~l~vGRL~~eK~~~~Li~a~~~l~~~ 256 (462)
T PLN02846 181 CHKVIRLSAATQDYPRSIICNV-HGVNPKFLEIGKLK--LEQQKN-GEQAFTKGAYYIGKMVWSKGYKELLKLLHKHQKE 256 (462)
T ss_pred cCEEEccCHHHHHHhhCEEecC-ceechhhcCCCccc--HhhhcC-CCCCcceEEEEEecCcccCCHHHHHHHHHHHHhh
Confidence 5666666555444555555544 2332 3332211 111111 2332 235556665 89999999999999998
Q ss_pred cCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCc
Q 002273 709 VPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVP 787 (944)
Q Consensus 709 ~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvP 787 (944)
.|+.+|+|+|.| +.++.|++.+.++|++ .++ |.|... .. ..|..+|||+-|+.+ +.|+|++|||+||+|
T Consensus 257 ~~~~~l~ivGdG----p~~~~L~~~a~~l~l~-~~v-f~G~~~-~~---~~~~~~DvFv~pS~~Et~g~v~lEAmA~G~P 326 (462)
T PLN02846 257 LSGLEVDLYGSG----EDSDEVKAAAEKLELD-VRV-YPGRDH-AD---PLFHDYKVFLNPSTTDVVCTTTAEALAMGKI 326 (462)
T ss_pred CCCeEEEEECCC----ccHHHHHHHHHhcCCc-EEE-ECCCCC-HH---HHHHhCCEEEECCCcccchHHHHHHHHcCCc
Confidence 999999999987 6788899999999984 555 777643 33 455667999888866 889999999999999
Q ss_pred EEecCCCcccccchh-HHHhhcCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 002273 788 CVTMAGSVHAHNVGV-SLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 866 (944)
Q Consensus 788 vvt~~g~~~~~r~~~-~~l~~~gl~~~v~~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 866 (944)
||+ +++++ .++.. |-..+...|.+++++....+..++. ..++...++ .|+++..+++|++.|+
T Consensus 327 VVa-------~~~~~~~~v~~-~~ng~~~~~~~~~a~ai~~~l~~~~--~~~~~~a~~------~~SWe~~~~~l~~~~~ 390 (462)
T PLN02846 327 VVC-------ANHPSNEFFKQ-FPNCRTYDDGKGFVRATLKALAEEP--APLTDAQRH------ELSWEAATERFLRVAD 390 (462)
T ss_pred EEE-------ecCCCcceeec-CCceEecCCHHHHHHHHHHHHccCc--hhHHHHHHH------hCCHHHHHHHHHHHhc
Confidence 999 44431 22222 4444556899999999998877542 233333222 4899999888888876
No 177
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.13 E-value=1.5e-08 Score=104.78 Aligned_cols=183 Identities=11% Similarity=0.036 Sum_probs=138.9
Q ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCH---HH
Q 002273 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEA---HIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA---CA 118 (944)
Q Consensus 45 ~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~ 118 (944)
..+++.++..|..++..|+|++|+..|++++...|....+ .+.+|.++++.+++++|+..+++.++.+|+++ .+
T Consensus 29 ~~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a 108 (243)
T PRK10866 29 DNPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV 108 (243)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence 4578899999999999999999999999999999987654 48999999999999999999999999988764 67
Q ss_pred HHHHHHHHHHcC---------------C---HHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHH
Q 002273 119 HTHCGILYKDEG---------------R---LVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKY 180 (944)
Q Consensus 119 ~~~la~~~~~~g---------------~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~ 180 (944)
++.+|.++...+ + ..+|+..|++.++..|+...+... .. -+..+
T Consensus 109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A----~~--------------rl~~l 170 (243)
T PRK10866 109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDA----TK--------------RLVFL 170 (243)
T ss_pred HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHH----HH--------------HHHHH
Confidence 888998865443 1 357889999999999987543111 11 01111
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002273 181 YEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM---YAEAYCNMGVIYKNRGDLESAIACYERC 251 (944)
Q Consensus 181 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~a 251 (944)
+..+ ..--+..|..|.+.|.|..|+.-++.+++..|+ ..+++..++..|..+|..++|.+.....
T Consensus 171 ~~~l------a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 171 KDRL------AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHH------HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 1111 223346677788888888888888888887765 3567778888888888888887765543
No 178
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.09 E-value=2.2e-08 Score=107.42 Aligned_cols=157 Identities=23% Similarity=0.223 Sum_probs=139.7
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHH
Q 002273 78 DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157 (944)
Q Consensus 78 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 157 (944)
+|....+++..+..++..|++++|+..++..++..|+|+..+...+.++...|+.++|.+.+++++..+|.....
T Consensus 302 ~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l----- 376 (484)
T COG4783 302 KRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLL----- 376 (484)
T ss_pred CccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHH-----
Confidence 378889999999999999999999999999999999999999999999999999999999999999999997543
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 002273 158 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN 237 (944)
Q Consensus 158 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 237 (944)
..++|..+.+.|++.+|+..+++.+..+|+++..|..|+..|..+|+-.+|.. ..+..|..
T Consensus 377 --~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~-----------------A~AE~~~~ 437 (484)
T COG4783 377 --QLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL-----------------ARAEGYAL 437 (484)
T ss_pred --HHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH-----------------HHHHHHHh
Confidence 67778888889999999999999999999999999999999999998776654 44566777
Q ss_pred cCCHHHHHHHHHHHHHhCCCc
Q 002273 238 RGDLESAIACYERCLAVSPNF 258 (944)
Q Consensus 238 ~g~~~~A~~~~~~al~~~p~~ 258 (944)
.|++++|+..+.++.+...-+
T Consensus 438 ~G~~~~A~~~l~~A~~~~~~~ 458 (484)
T COG4783 438 AGRLEQAIIFLMRASQQVKLG 458 (484)
T ss_pred CCCHHHHHHHHHHHHHhccCC
Confidence 899999999999998876443
No 179
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=99.08 E-value=1.5e-08 Score=102.41 Aligned_cols=176 Identities=16% Similarity=0.173 Sum_probs=126.1
Q ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCH---HHH
Q 002273 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA---CAH 119 (944)
Q Consensus 46 ~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~ 119 (944)
.+++.++..|..++..|+|.+|+..|++++...|.. ..+.+.+|.+++..|++++|+..+++.++..|+++ .++
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 467899999999999999999999999999998874 68999999999999999999999999999999875 578
Q ss_pred HHHHHHHHHcC-----------CHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 002273 120 THCGILYKDEG-----------RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP 188 (944)
Q Consensus 120 ~~la~~~~~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 188 (944)
+.+|.+++.+. ...+|+..|+..++..|+...+.... +-+..+...+
T Consensus 83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~------------------~~l~~l~~~l---- 140 (203)
T PF13525_consen 83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAK------------------KRLAELRNRL---- 140 (203)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHH------------------HHHHHHHHHH----
T ss_pred HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHH------------------HHHHHHHHHH----
Confidence 88888876543 34589999999999999976542110 0111111111
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHH
Q 002273 189 HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA---EAYCNMGVIYKNRGDLESAI 245 (944)
Q Consensus 189 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~ 245 (944)
..--+.+|..|.+.|.|..|+..++.+++..|+.. +++..++..|..+|..+.|.
T Consensus 141 --a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 141 --AEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp --HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred --HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 22334567777777778888877877777777653 46677777777777776443
No 180
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=99.07 E-value=2.8e-08 Score=106.62 Aligned_cols=157 Identities=17% Similarity=0.152 Sum_probs=139.9
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 002273 320 WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 399 (944)
Q Consensus 320 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 399 (944)
|....+++..+..++..|++++|+..++..+...|+|+..+...+.++.+.++.++|.+.+++++.++|+.+....++|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~ 382 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQ 382 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 56778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhhHHHHhhhccCCC
Q 002273 400 VYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH 476 (944)
Q Consensus 400 ~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~ 476 (944)
+|.+.|++.+|+..++..+..+|+++..|..|++.|..+|+..+|...+.+.+.+.-+...+..-...+......+.
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~~~~~ 459 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQVKLGF 459 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhccCCc
Confidence 99999999999999999999999999999999999999999999999999988888877766655444444443443
No 181
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=99.06 E-value=9e-10 Score=108.92 Aligned_cols=156 Identities=14% Similarity=0.176 Sum_probs=120.1
Q ss_pred CCCCCeEEEecCCC--CcCCHHHHHHHHHHHhH-cCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcH
Q 002273 678 LTNGFITFGSFNNL--AKITPKVLQVWARILCA-VPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNH 754 (944)
Q Consensus 678 ~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~-~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~ 754 (944)
..++.++++.+++. .|....+++++..+... .|+..|++.|.+ .....+.......++ .++|.|.+..+ ..
T Consensus 11 ~~~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~~----~~~~~~~~~~~~~~~-~~~i~~~~~~~-~~ 84 (172)
T PF00534_consen 11 IPDKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNYKLVIVGDG----EYKKELKNLIEKLNL-KENIIFLGYVP-DD 84 (172)
T ss_dssp T-TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTEEEEEESHC----CHHHHHHHHHHHTTC-GTTEEEEESHS-HH
T ss_pred CCCCCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCeEEEEEccc----ccccccccccccccc-ccccccccccc-cc
Confidence 34566777777754 78999999999998875 899999999843 355667788888898 58999999987 78
Q ss_pred HHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCccccc--CCHHHHHHHHHHHhcC
Q 002273 755 DHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA--KNEDEYVQLALQLASD 831 (944)
Q Consensus 755 ~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~--~~~~~y~~~a~~l~~d 831 (944)
+....|+.+||++-|..+ ++|++.+|||++|+|||+-....+.. ++ .-+...++. .|.++.++...++..|
T Consensus 85 ~l~~~~~~~di~v~~s~~e~~~~~~~Ea~~~g~pvI~~~~~~~~e-----~~-~~~~~g~~~~~~~~~~l~~~i~~~l~~ 158 (172)
T PF00534_consen 85 ELDELYKSSDIFVSPSRNEGFGLSLLEAMACGCPVIASDIGGNNE-----II-NDGVNGFLFDPNDIEELADAIEKLLND 158 (172)
T ss_dssp HHHHHHHHTSEEEE-BSSBSS-HHHHHHHHTT-EEEEESSTHHHH-----HS-GTTTSEEEESTTSHHHHHHHHHHHHHH
T ss_pred ccccccccceeccccccccccccccccccccccceeeccccCCce-----ee-ccccceEEeCCCCHHHHHHHHHHHHCC
Confidence 999999999999999877 88999999999999999933222211 11 113334443 4679999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 002273 832 VTALANLRMSLRDL 845 (944)
Q Consensus 832 ~~~~~~~r~~~~~~ 845 (944)
++.++.|++..|++
T Consensus 159 ~~~~~~l~~~~~~~ 172 (172)
T PF00534_consen 159 PELRQKLGKNARER 172 (172)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC
Confidence 99999999988875
No 182
>PRK00654 glgA glycogen synthase; Provisional
Probab=99.05 E-value=4.6e-09 Score=121.23 Aligned_cols=162 Identities=15% Similarity=0.117 Sum_probs=120.0
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEE-ccCccCcHHHH
Q 002273 681 GFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDL-LPLILLNHDHM 757 (944)
Q Consensus 681 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~-~~~~~~~~~~~ 757 (944)
+.++++.+.|+ .|..+.+++++.+++.. +.+|+++|.+ .......+++..+++| +++.| .+. . .....
T Consensus 281 ~~~~i~~vGRl~~~KG~~~li~a~~~l~~~--~~~lvivG~g--~~~~~~~l~~l~~~~~---~~v~~~~g~-~-~~~~~ 351 (466)
T PRK00654 281 DAPLFAMVSRLTEQKGLDLVLEALPELLEQ--GGQLVLLGTG--DPELEEAFRALAARYP---GKVGVQIGY-D-EALAH 351 (466)
T ss_pred CCcEEEEeeccccccChHHHHHHHHHHHhc--CCEEEEEecC--cHHHHHHHHHHHHHCC---CcEEEEEeC-C-HHHHH
Confidence 56678888865 79999999999998864 7899998765 2345677777777775 45654 444 2 23344
Q ss_pred HhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccc----------------cCCHHH
Q 002273 758 QAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLI----------------AKNEDE 820 (944)
Q Consensus 758 ~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v----------------~~~~~~ 820 (944)
..|+.+|++|-|+.| +.|.|.+|||++|+|||+ +++| |++|.| ..|+++
T Consensus 352 ~~~~~aDv~v~PS~~E~~gl~~lEAma~G~p~V~-------~~~g-------G~~e~v~~~~~~~~~~~G~lv~~~d~~~ 417 (466)
T PRK00654 352 RIYAGADMFLMPSRFEPCGLTQLYALRYGTLPIV-------RRTG-------GLADTVIDYNPEDGEATGFVFDDFNAED 417 (466)
T ss_pred HHHhhCCEEEeCCCCCCchHHHHHHHHCCCCEEE-------eCCC-------CccceeecCCCCCCCCceEEeCCCCHHH
Confidence 678999999988877 779999999999999998 6666 555433 247788
Q ss_pred HHHHHHHHhc---CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 002273 821 YVQLALQLAS---DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 870 (944)
Q Consensus 821 y~~~a~~l~~---d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 870 (944)
+.+...++.. |++.+.+++.+. +. ..|+++.+++.++++|+++..
T Consensus 418 la~~i~~~l~~~~~~~~~~~~~~~~---~~--~~fsw~~~a~~~~~lY~~~~~ 465 (466)
T PRK00654 418 LLRALRRALELYRQPPLWRALQRQA---MA--QDFSWDKSAEEYLELYRRLLG 465 (466)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH---hc--cCCChHHHHHHHHHHHHHHhh
Confidence 8877776655 666655555433 22 459999999999999998754
No 183
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.05 E-value=3.5e-09 Score=116.58 Aligned_cols=108 Identities=20% Similarity=0.133 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 002273 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKD 128 (944)
Q Consensus 49 ~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 128 (944)
..+...|..++..|+|++|+.+|+++++.+|++..+++.+|.++...|++++|+..++++++++|+++.+++.+|.++..
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 35788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCChhHHhHH
Q 002273 129 EGRLVEAAESYHKALSADPSYKPAAECL 156 (944)
Q Consensus 129 ~g~~~~A~~~~~~al~~~p~~~~~~~~l 156 (944)
+|++++|+..|+++++++|++......+
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 9999999999999999999998764433
No 184
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.05 E-value=3.9e-09 Score=116.23 Aligned_cols=108 Identities=16% Similarity=0.152 Sum_probs=58.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 002273 328 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM 407 (944)
Q Consensus 328 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 407 (944)
..|..++..|++++|+.+|+++++++|+++.+++++|.++...|++++|+..++++++++|+++.+++.+|.++..+|++
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 33444555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002273 408 DAAAEMIEKAIAANPTYAEAYNNLGVLY 435 (944)
Q Consensus 408 ~~A~~~l~~al~~~p~~~~a~~~la~~~ 435 (944)
++|+..|+++++++|++..+...++.+.
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l~~~~ 114 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLIKECD 114 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 5555555555555555555555544443
No 185
>PRK14098 glycogen synthase; Provisional
Probab=99.04 E-value=4.7e-09 Score=120.84 Aligned_cols=163 Identities=15% Similarity=0.081 Sum_probs=123.0
Q ss_pred CCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHH
Q 002273 680 NGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 757 (944)
Q Consensus 680 ~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~ 757 (944)
.+.++|+++.|+ .|..+.+++++.+++. ++.+|+++|.+ ....++.+++..+++ ++||.|.+..+ ..+..
T Consensus 305 ~~~~~i~~vgRl~~~KG~d~li~a~~~l~~--~~~~lvivG~G--~~~~~~~l~~l~~~~---~~~V~~~g~~~-~~~~~ 376 (489)
T PRK14098 305 EETPLVGVIINFDDFQGAELLAESLEKLVE--LDIQLVICGSG--DKEYEKRFQDFAEEH---PEQVSVQTEFT-DAFFH 376 (489)
T ss_pred cCCCEEEEeccccccCcHHHHHHHHHHHHh--cCcEEEEEeCC--CHHHHHHHHHHHHHC---CCCEEEEEecC-HHHHH
Confidence 356678888866 7999999999999886 48999999865 234567777777776 47999998865 45667
Q ss_pred HhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcc------------cc--cCCHHHHH
Q 002273 758 QAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKH------------LI--AKNEDEYV 822 (944)
Q Consensus 758 ~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~------------~v--~~~~~~y~ 822 (944)
..|+.+|++|-|+-+ +.|.+.+|||.+|+|+|+ +++| |+.| ++ ..|++++.
T Consensus 377 ~~~a~aDi~l~PS~~E~~Gl~~lEAma~G~ppVv-------~~~G-------Gl~d~v~~~~~~~~~G~l~~~~d~~~la 442 (489)
T PRK14098 377 LAIAGLDMLLMPGKIESCGMLQMFAMSYGTIPVA-------YAGG-------GIVETIEEVSEDKGSGFIFHDYTPEALV 442 (489)
T ss_pred HHHHhCCEEEeCCCCCCchHHHHHHHhCCCCeEE-------ecCC-------CCceeeecCCCCCCceeEeCCCCHHHHH
Confidence 789999999988866 779999999999988777 4555 4433 33 24677777
Q ss_pred HHHHH---HhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 002273 823 QLALQ---LASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMW 869 (944)
Q Consensus 823 ~~a~~---l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 869 (944)
+...+ +.+|++.+++++.+ .+. ..|+++..+++++++|+++.
T Consensus 443 ~ai~~~l~~~~~~~~~~~~~~~---~~~--~~fsw~~~a~~y~~lY~~~~ 487 (489)
T PRK14098 443 AKLGEALALYHDEERWEELVLE---AME--RDFSWKNSAEEYAQLYRELL 487 (489)
T ss_pred HHHHHHHHHHcCHHHHHHHHHH---Hhc--CCCChHHHHHHHHHHHHHHh
Confidence 66544 55788776666542 332 46999999999999999875
No 186
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=99.03 E-value=5e-08 Score=100.98 Aligned_cols=182 Identities=12% Similarity=0.050 Sum_probs=140.6
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHH
Q 002273 80 GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACA---HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECL 156 (944)
Q Consensus 80 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 156 (944)
..+..++..|..++..|++++|++.|++++...|..+.+ .+.+|.++++.+++++|+..+++.++.+|+++..
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~---- 105 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI---- 105 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch----
Confidence 467888999999999999999999999999999988654 4899999999999999999999999999998775
Q ss_pred HHHHHHHHHHHHHcC------------------ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002273 157 AIVLTDLGTSLKLAG------------------NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA 218 (944)
Q Consensus 157 a~~~~~lg~~~~~~g------------------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 218 (944)
..+++.+|.++...+ ...+|+..|++.++..|+...+ .+|...+..+
T Consensus 106 ~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya--------------~~A~~rl~~l- 170 (243)
T PRK10866 106 DYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYT--------------TDATKRLVFL- 170 (243)
T ss_pred HHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhH--------------HHHHHHHHHH-
Confidence 445677776653332 1356888889999998876332 1222111111
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHhhhhhhhhHHH
Q 002273 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF---EIAKNNMAIALTDLGTKTYGRALL 282 (944)
Q Consensus 219 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~l~~~~~~~~~~a~~ 282 (944)
...-..--+.+|..|.+.|++..|+.-++.+++..|+. .++...+..++..+|....+....
T Consensus 171 --~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~ 235 (243)
T PRK10866 171 --KDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVA 235 (243)
T ss_pred --HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 11112334578999999999999999999999998875 467788888999988877665543
No 187
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=99.03 E-value=1.1e-08 Score=114.02 Aligned_cols=150 Identities=11% Similarity=0.081 Sum_probs=104.0
Q ss_pred CeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcc
Q 002273 682 FITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYS 761 (944)
Q Consensus 682 ~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~ 761 (944)
.++|..--...|..+.+++++.+ .| .+|+++|.+ ...+.+++ ++ .++|.|+|.++ ..+....|.
T Consensus 197 ~il~~G~~~~~K~~~~li~a~~~----~~-~~l~ivG~g----~~~~~l~~-----~~-~~~V~~~g~~~-~~~~~~~~~ 260 (351)
T cd03804 197 YYLSVGRLVPYKRIDLAIEAFNK----LG-KRLVVIGDG----PELDRLRA-----KA-GPNVTFLGRVS-DEELRDLYA 260 (351)
T ss_pred EEEEEEcCccccChHHHHHHHHH----CC-CcEEEEECC----hhHHHHHh-----hc-CCCEEEecCCC-HHHHHHHHH
Confidence 34444433457888888887765 45 788888865 33344433 44 58999999987 678999999
Q ss_pred cccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchh--HHHhhcCCccc-c-cCCHHHHHHHHHHHhcCHHHHHH
Q 002273 762 LMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGV--SLLTKVGLKHL-I-AKNEDEYVQLALQLASDVTALAN 837 (944)
Q Consensus 762 ~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~--~~l~~~gl~~~-v-~~~~~~y~~~a~~l~~d~~~~~~ 837 (944)
.+|+++-|...+.|.+.+|||+||+|||+. ++|+ .++.. |-..+ + ..|++++++....+.+|++ .
T Consensus 261 ~ad~~v~ps~e~~g~~~~Eama~G~Pvi~~-------~~~~~~e~i~~-~~~G~~~~~~~~~~la~~i~~l~~~~~---~ 329 (351)
T cd03804 261 RARAFLFPAEEDFGIVPVEAMASGTPVIAY-------GKGGALETVID-GVTGILFEEQTVESLAAAVERFEKNED---F 329 (351)
T ss_pred hCCEEEECCcCCCCchHHHHHHcCCCEEEe-------CCCCCcceeeC-CCCEEEeCCCCHHHHHHHHHHHHhCcc---c
Confidence 999999887778899999999999999993 3331 00111 11222 2 3688899999999999984 3
Q ss_pred HHHHHHHHhhcCCCCChHHHHHHH
Q 002273 838 LRMSLRDLMSKSPVCDGQNFALGL 861 (944)
Q Consensus 838 ~r~~~~~~~~~~~~~~~~~~~~~~ 861 (944)
+++.++++. ..|+.+.|.+++
T Consensus 330 ~~~~~~~~~---~~~~~~~~~~~~ 350 (351)
T cd03804 330 DPQAIRAHA---ERFSESRFREKI 350 (351)
T ss_pred CHHHHHHHH---HhcCHHHHHHHh
Confidence 444454443 237888888765
No 188
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.02 E-value=1.1e-07 Score=97.45 Aligned_cols=243 Identities=16% Similarity=0.168 Sum_probs=164.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HH
Q 002273 158 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH-----YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY------AE 226 (944)
Q Consensus 158 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~ 226 (944)
.++.+++..+....++.+++.+-+..+.+... -......++..+..++.++++++.|+++++...++ ..
T Consensus 84 ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElq 163 (518)
T KOG1941|consen 84 EAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQ 163 (518)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeee
Confidence 34667777777778888888888777766322 23567778999999999999999999998864432 24
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHH
Q 002273 227 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDIN 306 (944)
Q Consensus 227 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~ 306 (944)
++..+|.++....++++|+-+..++.++..... .+++.
T Consensus 164 vcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~------------------------------------------l~d~~ 201 (518)
T KOG1941|consen 164 VCVSLGSLFAQLKDYEKALFFPCKAAELVNSYG------------------------------------------LKDWS 201 (518)
T ss_pred hhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcC------------------------------------------cCchh
Confidence 778899999999999999998888877643211 00000
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Q 002273 307 QGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN------PHCAEACNNLGVIYKDRDNLDKAVECY 380 (944)
Q Consensus 307 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~ 380 (944)
. .| ...+++.++..+..+|+.-.|.++.+++.++. +-.......+|.+|...|+.+.|..-|
T Consensus 202 ~---ky---------r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rY 269 (518)
T KOG1941|consen 202 L---KY---------RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRY 269 (518)
T ss_pred H---HH---------HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHH
Confidence 0 00 02345667777777777777777777776652 223455666788888888888888888
Q ss_pred HHHHhhCCC------CHHHHHHHHHHHHHcCCHHH-----HHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHH
Q 002273 381 QMALSIKPN------FSQSLNNLGVVYTVQGKMDA-----AAEMIEKAIAANPTY------AEAYNNLGVLYRDAGSISL 443 (944)
Q Consensus 381 ~~al~~~p~------~~~~~~~la~~~~~~g~~~~-----A~~~l~~al~~~p~~------~~a~~~la~~~~~~g~~~e 443 (944)
++|...... ..+++...+.++....-..+ |++.-++++++.... ...+..++.+|..+|.-++
T Consensus 270 e~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~ 349 (518)
T KOG1941|consen 270 EQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDE 349 (518)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhH
Confidence 877755321 23455555666554443333 777777777764332 4567788999988888877
Q ss_pred HHHHHHHHHhh
Q 002273 444 AIDAYEQCLKI 454 (944)
Q Consensus 444 A~~~~~~al~l 454 (944)
=...+.++-+.
T Consensus 350 ~~~h~~ra~~~ 360 (518)
T KOG1941|consen 350 LRAHVVRAHEC 360 (518)
T ss_pred HHHHHHHHHHH
Confidence 77777665443
No 189
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.01 E-value=7.6e-09 Score=117.56 Aligned_cols=153 Identities=13% Similarity=0.159 Sum_probs=116.6
Q ss_pred CCCeEEEecCC--CCcCCHHHHHHHHHHHhH------cCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCcc
Q 002273 680 NGFITFGSFNN--LAKITPKVLQVWARILCA------VPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLIL 751 (944)
Q Consensus 680 ~~~~~f~~~~~--~~K~~~~~~~~~~~il~~------~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~ 751 (944)
++..++++..+ ..|..+.+++++..+.+. .|+.+|+++|.+ ..++.+++.+++.|++ +.+.|.|.++
T Consensus 230 ~~~~vi~~~grl~~~K~~~~li~A~~~l~~~~~~~~~~~~i~l~ivG~G----~~~~~l~~~~~~~~l~-~~~~~~g~~~ 304 (415)
T cd03816 230 ERPALLVSSTSWTPDEDFGILLDALVAYEKSAATGPKLPKLLCIITGKG----PLKEKYLERIKELKLK-KVTIRTPWLS 304 (415)
T ss_pred CCceEEEEeccccCCCCHHHHHHHHHHHHHhhcccccCCCEEEEEEecC----ccHHHHHHHHHHcCCC-cEEEEcCcCC
Confidence 44455666564 478889999999988753 488999999876 4578888899999994 5555556666
Q ss_pred CcHHHHHhcccccEEecCCC----CCCcccHHHhhhcCCcEEecCCCcccccch--hHHHhhcCCcccccCCHHHHHHHH
Q 002273 752 LNHDHMQAYSLMDISLDTFP----YAGTTTTCESLYMGVPCVTMAGSVHAHNVG--VSLLTKVGLKHLIAKNEDEYVQLA 825 (944)
Q Consensus 752 ~~~~~~~~~~~~Di~Ld~~~----~~~~~t~~eal~~gvPvvt~~g~~~~~r~~--~~~l~~~gl~~~v~~~~~~y~~~a 825 (944)
.++....|..+||++-+.+ ++.+++.+|||+||+|||+ ++++ .-++.. |-..++..|.+++.+..
T Consensus 305 -~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~-------s~~~~~~eiv~~-~~~G~lv~d~~~la~~i 375 (415)
T cd03816 305 -AEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCA-------LDFKCIDELVKH-GENGLVFGDSEELAEQL 375 (415)
T ss_pred -HHHHHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEE-------eCCCCHHHHhcC-CCCEEEECCHHHHHHHH
Confidence 6888999999999984332 3458899999999999999 4443 112222 44455567999999999
Q ss_pred HHHhcC---HHHHHHHHHHHHHHh
Q 002273 826 LQLASD---VTALANLRMSLRDLM 846 (944)
Q Consensus 826 ~~l~~d---~~~~~~~r~~~~~~~ 846 (944)
..|.+| ++.+.+|++..|+..
T Consensus 376 ~~ll~~~~~~~~~~~m~~~~~~~~ 399 (415)
T cd03816 376 IDLLSNFPNRGKLNSLKKGAQEES 399 (415)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHhh
Confidence 999999 899999998887764
No 190
>PRK14099 glycogen synthase; Provisional
Probab=99.00 E-value=1.3e-08 Score=117.15 Aligned_cols=161 Identities=17% Similarity=0.141 Sum_probs=120.0
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcE-EEccCccCcHHHH
Q 002273 681 GFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRV-DLLPLILLNHDHM 757 (944)
Q Consensus 681 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv-~~~~~~~~~~~~~ 757 (944)
+.++|+++.|+ .|..+.++++..+++. .+.+|+++|.+ .+..++.+++..++++ +++ .|+|. .++..
T Consensus 294 ~~~li~~VgRL~~~KG~d~Li~A~~~l~~--~~~~lvivG~G--~~~~~~~l~~l~~~~~---~~v~~~~G~---~~~l~ 363 (485)
T PRK14099 294 DALLLGVISRLSWQKGLDLLLEALPTLLG--EGAQLALLGSG--DAELEARFRAAAQAYP---GQIGVVIGY---DEALA 363 (485)
T ss_pred CCcEEEEEecCCccccHHHHHHHHHHHHh--cCcEEEEEecC--CHHHHHHHHHHHHHCC---CCEEEEeCC---CHHHH
Confidence 46778888865 7999999999998876 36899998865 3346677777766653 565 67786 35666
Q ss_pred Hhc-ccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcc-----------------cc--cC
Q 002273 758 QAY-SLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKH-----------------LI--AK 816 (944)
Q Consensus 758 ~~~-~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~-----------------~v--~~ 816 (944)
..| ..+|++|-|+-+ +.|.+.+|||++|+|+|+ +++| |++| ++ ..
T Consensus 364 ~~~~a~aDifv~PS~~E~fGl~~lEAma~G~ppVv-------s~~G-------Gl~d~V~~~~~~~~~~~~~~G~l~~~~ 429 (485)
T PRK14099 364 HLIQAGADALLVPSRFEPCGLTQLCALRYGAVPVV-------ARVG-------GLADTVVDANEMAIATGVATGVQFSPV 429 (485)
T ss_pred HHHHhcCCEEEECCccCCCcHHHHHHHHCCCCcEE-------eCCC-------CccceeecccccccccCCCceEEeCCC
Confidence 665 579999988876 779999999999965554 3444 4433 33 24
Q ss_pred CHHHHHHHHHH---HhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 002273 817 NEDEYVQLALQ---LASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 870 (944)
Q Consensus 817 ~~~~y~~~a~~---l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 870 (944)
|++++.+...+ +.+|++.++++++..+ ...|++++.+++++++|+++..
T Consensus 430 d~~~La~ai~~a~~l~~d~~~~~~l~~~~~-----~~~fSw~~~a~~y~~lY~~l~~ 481 (485)
T PRK14099 430 TADALAAALRKTAALFADPVAWRRLQRNGM-----TTDVSWRNPAQHYAALYRSLVA 481 (485)
T ss_pred CHHHHHHHHHHHHHHhcCHHHHHHHHHHhh-----hhcCChHHHHHHHHHHHHHHHh
Confidence 77888776664 7889988887777653 2459999999999999999875
No 191
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=98.98 E-value=1.7e-08 Score=115.44 Aligned_cols=153 Identities=17% Similarity=0.175 Sum_probs=108.4
Q ss_pred EecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHH-HHHHHHHHHcCCCC------------CcEEEccCccC
Q 002273 686 GSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVR-HRFLSTLEQLGLES------------LRVDLLPLILL 752 (944)
Q Consensus 686 ~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~-~~~~~~~~~~gi~~------------~rv~~~~~~~~ 752 (944)
.+..+..|-...++++|.++++..|+.+|+|+|.+ ..+ ..+.+.+++.|+.. .+|.+.+.
T Consensus 237 l~~~~~~~~~~~ll~A~~~l~~~~~~~~liivG~g----~~r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~--- 309 (425)
T PRK05749 237 IAASTHEGEEELVLDAHRALLKQFPNLLLILVPRH----PERFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDT--- 309 (425)
T ss_pred EEeCCCchHHHHHHHHHHHHHHhCCCcEEEEcCCC----hhhHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEec---
Confidence 33345566667789999999988999999999765 343 67888889999841 12333222
Q ss_pred cHHHHHhcccccEE-e-cCCCCCCcccHHHhhhcCCcEEecCCCcccccchh--HHHhhcCCcccccCCHHHHHHHHHHH
Q 002273 753 NHDHMQAYSLMDIS-L-DTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGV--SLLTKVGLKHLIAKNEDEYVQLALQL 828 (944)
Q Consensus 753 ~~~~~~~~~~~Di~-L-d~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~--~~l~~~gl~~~v~~~~~~y~~~a~~l 828 (944)
..+....|+.+||+ + -|+..+||.+.+|||++|+|||+-+.. +.++. ..+...|. -+...|.+++.+....|
T Consensus 310 ~~el~~~y~~aDi~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~---~~~~e~~~~~~~~g~-~~~~~d~~~La~~l~~l 385 (425)
T PRK05749 310 MGELGLLYAIADIAFVGGSLVKRGGHNPLEPAAFGVPVISGPHT---FNFKEIFERLLQAGA-AIQVEDAEDLAKAVTYL 385 (425)
T ss_pred HHHHHHHHHhCCEEEECCCcCCCCCCCHHHHHHhCCCEEECCCc---cCHHHHHHHHHHCCC-eEEECCHHHHHHHHHHH
Confidence 35788899999995 4 244447899999999999999983211 11111 12222232 11257999999999999
Q ss_pred hcCHHHHHHHHHHHHHHhhcC
Q 002273 829 ASDVTALANLRMSLRDLMSKS 849 (944)
Q Consensus 829 ~~d~~~~~~~r~~~~~~~~~~ 849 (944)
.+|++.+++++++.++.+.+.
T Consensus 386 l~~~~~~~~m~~~a~~~~~~~ 406 (425)
T PRK05749 386 LTDPDARQAYGEAGVAFLKQN 406 (425)
T ss_pred hcCHHHHHHHHHHHHHHHHhC
Confidence 999999999999999887544
No 192
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=98.98 E-value=1e-08 Score=118.91 Aligned_cols=160 Identities=16% Similarity=0.093 Sum_probs=121.8
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHH
Q 002273 681 GFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 758 (944)
Q Consensus 681 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 758 (944)
+.++++++.++ .|..+.+++++.++.+. +.+|+++|.+ .+...+.+++...+.+ +++.|.+..+ ......
T Consensus 290 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~--~~~lvi~G~g--~~~~~~~l~~~~~~~~---~~v~~~~~~~-~~~~~~ 361 (473)
T TIGR02095 290 DVPLFGVISRLTQQKGVDLLLAALPELLEL--GGQLVVLGTG--DPELEEALRELAERYP---GNVRVIIGYD-EALAHL 361 (473)
T ss_pred CCCEEEEEecCccccChHHHHHHHHHHHHc--CcEEEEECCC--CHHHHHHHHHHHHHCC---CcEEEEEcCC-HHHHHH
Confidence 66778888866 89999999999998863 5899998865 2345666766666553 5788776654 455567
Q ss_pred hcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccc----------------cCCHHHH
Q 002273 759 AYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLI----------------AKNEDEY 821 (944)
Q Consensus 759 ~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v----------------~~~~~~y 821 (944)
.|+.+|++|-|+-+ +.|.+.+|||++|+|||+ +++| |++|.| ..|++++
T Consensus 362 ~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~-------s~~g-------g~~e~v~~~~~~~~~~~G~l~~~~d~~~l 427 (473)
T TIGR02095 362 IYAGADFILMPSRFEPCGLTQLYAMRYGTVPIV-------RRTG-------GLADTVVDGDPEAESGTGFLFEEYDPGAL 427 (473)
T ss_pred HHHhCCEEEeCCCcCCcHHHHHHHHHCCCCeEE-------ccCC-------CccceEecCCCCCCCCceEEeCCCCHHHH
Confidence 88999999998877 779999999999999998 6666 555443 2478888
Q ss_pred HHHHHHHhc----CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 002273 822 VQLALQLAS----DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 867 (944)
Q Consensus 822 ~~~a~~l~~----d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 867 (944)
.+...++.. |++.+.++++... ...|+++..++.++++|++
T Consensus 428 a~~i~~~l~~~~~~~~~~~~~~~~~~-----~~~fsw~~~a~~~~~~Y~~ 472 (473)
T TIGR02095 428 LAALSRALRLYRQDPSLWEALQKNAM-----SQDFSWDKSAKQYVELYRS 472 (473)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHh-----ccCCCcHHHHHHHHHHHHh
Confidence 887766666 8877777766543 2459999999999999986
No 193
>PHA01630 putative group 1 glycosyl transferase
Probab=98.96 E-value=1.8e-08 Score=109.88 Aligned_cols=155 Identities=14% Similarity=0.073 Sum_probs=109.2
Q ss_pred CCeEEEecC--CCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHH
Q 002273 681 GFITFGSFN--NLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 758 (944)
Q Consensus 681 ~~~~f~~~~--~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 758 (944)
+.++++... ...|..+.++++|..+....|+.+|+++|.+.. ..++ .|+. . +.+.++ ..+...
T Consensus 141 ~~~vl~~~g~~~~~Kg~d~Li~A~~~l~~~~~~~~llivG~~~~----~~~l------~~~~-~---~~~~v~-~~~l~~ 205 (331)
T PHA01630 141 HPCVLAILPHSWDRKGGDIVVKIFHELQNEGYDFYFLIKSSNML----DPRL------FGLN-G---VKTPLP-DDDIYS 205 (331)
T ss_pred CCEEEEEeccccccCCHHHHHHHHHHHHhhCCCEEEEEEeCccc----chhh------cccc-c---eeccCC-HHHHHH
Confidence 334444443 368999999999999998889999999985421 1111 1331 1 223344 578889
Q ss_pred hcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcc-------------------------
Q 002273 759 AYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKH------------------------- 812 (944)
Q Consensus 759 ~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~------------------------- 812 (944)
.|+.+||++-|+-+ +.|.+.+|||++|+|||+ +++| |++|
T Consensus 206 ~y~~aDv~v~pS~~E~fgl~~lEAMA~G~PVIa-------s~~g-------g~~E~i~~~~ng~lv~~~~~~~~~~~~~~ 271 (331)
T PHA01630 206 LFAGCDILFYPVRGGAFEIPVIEALALGLDVVV-------TEKG-------AWSEWVLSNLDVYWIKSGRKPKLWYTNPI 271 (331)
T ss_pred HHHhCCEEEECCccccCChHHHHHHHcCCCEEE-------eCCC-------CchhhccCCCceEEeeecccccccccCCc
Confidence 99999999888766 669999999999999999 5555 3333
Q ss_pred ----cccCCHHHHHHHHHHHhcCH--H-HHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 002273 813 ----LIAKNEDEYVQLALQLASDV--T-ALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 867 (944)
Q Consensus 813 ----~v~~~~~~y~~~a~~l~~d~--~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 867 (944)
++..|.++..+.++++..|+ + .++.++...+. .. .-|+++..+..++++|++
T Consensus 272 ~~G~~v~~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~-~~--~~fs~~~ia~k~~~l~~~ 330 (331)
T PHA01630 272 HVGYFLDPDIEDAYQKLLEALANWTPEKKKENLEGRAIL-YR--ENYSYNAIAKMWEKILEK 330 (331)
T ss_pred ccccccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-HH--HhCCHHHHHHHHHHHHhc
Confidence 33447788888888988873 3 44444444333 32 449999999999999974
No 194
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.96 E-value=7.4e-07 Score=99.92 Aligned_cols=325 Identities=17% Similarity=0.172 Sum_probs=198.9
Q ss_pred HhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHH------------HHHHhcCCCCHHHHHHHHHHH
Q 002273 59 RSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSF------------SEAVKLDPQNACAHTHCGILY 126 (944)
Q Consensus 59 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~------------~~al~~~p~~~~~~~~la~~~ 126 (944)
...|+.+.|.+..+-+ ++...|-+++..+.+..+.+-|.-++ +++.+ +|++ .-...+.+.
T Consensus 739 vtiG~MD~AfksI~~I-----kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q-~~~e--~eakvAvLA 810 (1416)
T KOG3617|consen 739 VTIGSMDAAFKSIQFI-----KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ-NGEE--DEAKVAVLA 810 (1416)
T ss_pred EEeccHHHHHHHHHHH-----hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh-CCcc--hhhHHHHHH
Confidence 3468888887766554 23467888888877777666665443 33332 3332 334456777
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 002273 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206 (944)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 206 (944)
.++|..++|...|++.-+ +-.+-..|...|.+++|.+..+.-=.++ .-..|++.|..+...++
T Consensus 811 ieLgMlEeA~~lYr~ckR---------------~DLlNKlyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~D 873 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKR---------------YDLLNKLYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARRD 873 (1416)
T ss_pred HHHhhHHHHHHHHHHHHH---------------HHHHHHHHHhcccHHHHHHHHhhcccee--hhhhHHHHHHHHHhhcc
Confidence 889999999999988754 2334456777889998888766432222 24578888999999999
Q ss_pred HHHHHHHHHHH----------HHhCCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 002273 207 YDTALGCYEKA----------ALERPM----------YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266 (944)
Q Consensus 207 ~~~A~~~~~~a----------l~~~p~----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 266 (944)
.+.|+++|+++ +..+|. +...|...|..+...|+.+.|+.+|..+-. |+.+.
T Consensus 874 i~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D--------~fs~V 945 (1416)
T KOG3617|consen 874 IEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD--------YFSMV 945 (1416)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh--------hhhhe
Confidence 99999999885 223332 455677778888889999999999888643 23333
Q ss_pred HHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 002273 267 IALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFY 346 (944)
Q Consensus 267 ~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 346 (944)
.+.+- +|+.++|-.+.++ ..+..+.+.+|..|...|++.+|+..|
T Consensus 946 rI~C~------------------------------qGk~~kAa~iA~e-----sgd~AAcYhlaR~YEn~g~v~~Av~Ff 990 (1416)
T KOG3617|consen 946 RIKCI------------------------------QGKTDKAARIAEE-----SGDKAACYHLARMYENDGDVVKAVKFF 990 (1416)
T ss_pred eeEee------------------------------ccCchHHHHHHHh-----cccHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 33333 3344444443332 233445555666666666666666555
Q ss_pred HHHHhh------CCCC--------------HHHHHHHHHHHHHCC-CHHHHHHHHHHH------Hh--------------
Q 002273 347 ELAFHF------NPHC--------------AEACNNLGVIYKDRD-NLDKAVECYQMA------LS-------------- 385 (944)
Q Consensus 347 ~~al~~------~p~~--------------~~~~~~la~~~~~~g-~~~~A~~~~~~a------l~-------------- 385 (944)
.++... ..++ ..-....|..|...| +...|..+|.+| ++
T Consensus 991 TrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lI 1070 (1416)
T KOG3617|consen 991 TRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLI 1070 (1416)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHH
Confidence 554332 1110 011112233333333 444444444322 11
Q ss_pred ---hCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH------HHh----------------CCC---------CHHHHHH
Q 002273 386 ---IKP-NFSQSLNNLGVVYTVQGKMDAAAEMIEKA------IAA----------------NPT---------YAEAYNN 430 (944)
Q Consensus 386 ---~~p-~~~~~~~~la~~~~~~g~~~~A~~~l~~a------l~~----------------~p~---------~~~a~~~ 430 (944)
++| .++..+..-+..+....+|++|...+-.+ +++ .|. ...++..
T Consensus 1071 a~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeq 1150 (1416)
T KOG3617|consen 1071 AKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQ 1150 (1416)
T ss_pred HHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHH
Confidence 123 35777778888888888888887765443 332 111 1357788
Q ss_pred HHHHHHHcCCHHHHHHHHHHH
Q 002273 431 LGVLYRDAGSISLAIDAYEQC 451 (944)
Q Consensus 431 la~~~~~~g~~~eA~~~~~~a 451 (944)
+|.++.++|.|..|-+-|.+|
T Consensus 1151 vae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1151 VAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHHhccchHHHHHHHhhh
Confidence 999999999998888877765
No 195
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.95 E-value=1.7e-08 Score=92.73 Aligned_cols=105 Identities=24% Similarity=0.303 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q 002273 358 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---AEAYNNL 431 (944)
Q Consensus 358 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~---~~a~~~l 431 (944)
+.++.+|..+...|++++|++.|+++++.+|++ ..+++.+|.++...|++++|+.+|++++...|++ +.+++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 466777777777777888888887777777665 4577778888888888888888888888777664 5677788
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCChhhh
Q 002273 432 GVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 462 (944)
Q Consensus 432 a~~~~~~g~~~eA~~~~~~al~l~P~~~~a~ 462 (944)
|.++...|++++|...++++++..|++..+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 113 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAAK 113 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence 8888888888888888888888888776543
No 196
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.95 E-value=7.4e-08 Score=97.39 Aligned_cols=175 Identities=23% Similarity=0.213 Sum_probs=126.8
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHH
Q 002273 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157 (944)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 157 (944)
.+..++..|..++..|++.+|+..|++++...|.. +.+.+.+|.+++..|++++|+..+++.++..|+++.. .
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~----~ 79 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA----D 79 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH----H
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch----h
Confidence 56789999999999999999999999999998875 5789999999999999999999999999999998764 3
Q ss_pred HHHHHHHHHHHHc-----------CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 002273 158 IVLTDLGTSLKLA-----------GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAE 226 (944)
Q Consensus 158 ~~~~~lg~~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 226 (944)
.+++.+|.++... +...+|+..|+..++..|++..+- +|...+..+-+ .-..
T Consensus 80 ~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~--------------~A~~~l~~l~~---~la~ 142 (203)
T PF13525_consen 80 YALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAE--------------EAKKRLAELRN---RLAE 142 (203)
T ss_dssp HHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHH--------------HHHHHHHHHHH---HHHH
T ss_pred hHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHH--------------HHHHHHHHHHH---HHHH
Confidence 3455555554433 334577888888888877764322 22221111111 0123
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHhhhhh
Q 002273 227 AYCNMGVIYKNRGDLESAIACYERCLAVSPNFE---IAKNNMAIALTDLGTKT 276 (944)
Q Consensus 227 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~l~~~~~~~ 276 (944)
--+.+|..|.+.|.+..|+..++.+++..|+.. .+...++.++..+|...
T Consensus 143 ~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~ 195 (203)
T PF13525_consen 143 HELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQ 195 (203)
T ss_dssp HHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChH
Confidence 345689999999999999999999999999875 46677788888888765
No 197
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=98.94 E-value=1.6e-08 Score=114.06 Aligned_cols=169 Identities=15% Similarity=0.151 Sum_probs=124.5
Q ss_pred CCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHH
Q 002273 678 LTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHD 755 (944)
Q Consensus 678 ~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~ 755 (944)
...+.++|+.+++. .|..+.+++++.++... |+.+|++.|.+ .....+.+.....++ ++|.|.|.++ ..+
T Consensus 216 ~~~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~-~~~~l~i~G~~----~~~~~~~~~~~~~~~--~~v~~~g~~~-~~~ 287 (394)
T cd03794 216 GLDDKFVVLYAGNIGRAQGLDTLLEAAALLKDR-PDIRFLIVGDG----PEKEELKELAKALGL--DNVTFLGRVP-KEE 287 (394)
T ss_pred CCCCcEEEEEecCcccccCHHHHHHHHHHHhhc-CCeEEEEeCCc----ccHHHHHHHHHHcCC--CcEEEeCCCC-hHH
Confidence 34556677777754 78889999999999887 99999999865 234455555555665 5799999776 688
Q ss_pred HHHhcccccEEecCCCCCC------cccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCccccc-CCHHHHHHHHHHH
Q 002273 756 HMQAYSLMDISLDTFPYAG------TTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA-KNEDEYVQLALQL 828 (944)
Q Consensus 756 ~~~~~~~~Di~Ld~~~~~~------~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~-~~~~~y~~~a~~l 828 (944)
....|..+|+++-|....+ +++.+|||++|+|||+........- +..-+..-++. .|.+++++...++
T Consensus 288 ~~~~~~~~di~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~~-----~~~~~~g~~~~~~~~~~l~~~i~~~ 362 (394)
T cd03794 288 LPELLAAADVGLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAEL-----VEEAGAGLVVPPGDPEALAAAILEL 362 (394)
T ss_pred HHHHHHhhCeeEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchhh-----hccCCcceEeCCCCHHHHHHHHHHH
Confidence 9999999999998876542 4558999999999999543322211 11112222333 4899999999999
Q ss_pred hcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHH
Q 002273 829 ASDVTALANLRMSLRDLMSKSPVCDGQNFALGL 861 (944)
Q Consensus 829 ~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~ 861 (944)
..|++.+..+++..++...+ .|+++.+++.+
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~--~~s~~~~~~~~ 393 (394)
T cd03794 363 LDDPEERAEMGENGRRYVEE--KFSREKLAERL 393 (394)
T ss_pred HhChHHHHHHHHHHHHHHHH--hhcHHHHHHhc
Confidence 99999999999998887653 38888887765
No 198
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.92 E-value=2.9e-08 Score=106.14 Aligned_cols=182 Identities=22% Similarity=0.254 Sum_probs=135.0
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC--CC----HHHHHHHHHHHHHcCCHHHHH
Q 002273 63 KFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDP--QN----ACAHTHCGILYKDEGRLVEAA 136 (944)
Q Consensus 63 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~----~~~~~~la~~~~~~g~~~~A~ 136 (944)
+|++|..+|+++ |.+|...+++++|.+.|.++....- ++ ...+...+.++.+. ++++|+
T Consensus 30 ~~e~Aa~~y~~A--------------a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai 94 (282)
T PF14938_consen 30 DYEEAADLYEKA--------------ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAI 94 (282)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHH
T ss_pred CHHHHHHHHHHH--------------HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHH
Confidence 555666655554 6777888888888888888876431 11 34566667776665 999999
Q ss_pred HHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHH
Q 002273 137 ESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA-GNTQDGIQKYYEALKIDPH------YAPAYYNLGVVYSELMQYDT 209 (944)
Q Consensus 137 ~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~ 209 (944)
.+|++++.+.-.... ....+.++..+|.+|... |++++|+++|+++++.... ....+..+|.++...|+|++
T Consensus 95 ~~~~~A~~~y~~~G~-~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~ 173 (282)
T PF14938_consen 95 ECYEKAIEIYREAGR-FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEE 173 (282)
T ss_dssp HHHHHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHH
T ss_pred HHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHH
Confidence 999999987544333 234578899999999999 9999999999999987321 14567889999999999999
Q ss_pred HHHHHHHHHHhCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 002273 210 ALGCYEKAALERPM-------YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI 260 (944)
Q Consensus 210 A~~~~~~al~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 260 (944)
|++.|+++....-+ ....++..+.+++..|++..|...+++....+|....
T Consensus 174 A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~ 231 (282)
T PF14938_consen 174 AIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS 231 (282)
T ss_dssp HHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT
T ss_pred HHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 99999999875322 1235667888999999999999999999999886543
No 199
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.92 E-value=3.1e-05 Score=88.99 Aligned_cols=200 Identities=18% Similarity=0.099 Sum_probs=135.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 002273 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEG 130 (944)
Q Consensus 51 ~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 130 (944)
.++-..-....+++.+|++...++++..|+...+....|..+.++|+.++|..+++..-...+++...+-.+-.+|..++
T Consensus 12 r~rpi~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~ 91 (932)
T KOG2053|consen 12 RLRPIYDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLG 91 (932)
T ss_pred HHhHHHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHh
Confidence 34444556778999999999999999999999999999999999999999998888777777888888999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH--------------
Q 002273 131 RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYN-------------- 196 (944)
Q Consensus 131 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-------------- 196 (944)
++++|..+|++++..+|+ .+. +..+=.+|.+.+.|.+-.+.--+..+..|+++.....
T Consensus 92 ~~d~~~~~Ye~~~~~~P~-eel-------l~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~ 163 (932)
T KOG2053|consen 92 KLDEAVHLYERANQKYPS-EEL-------LYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENE 163 (932)
T ss_pred hhhHHHHHHHHHHhhCCc-HHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcc
Confidence 999999999999999998 443 2222233333333333222222222233332211111
Q ss_pred --------------------------------HHHHHHHcCCHHHHHHHHHH-HHH-hCCCCHHHHHHHHHHHHHcCCHH
Q 002273 197 --------------------------------LGVVYSELMQYDTALGCYEK-AAL-ERPMYAEAYCNMGVIYKNRGDLE 242 (944)
Q Consensus 197 --------------------------------la~~~~~~g~~~~A~~~~~~-al~-~~p~~~~~~~~la~~~~~~g~~~ 242 (944)
.-.++..+|++++|.+.+.. ..+ ..+.+...-......+...+++.
T Consensus 164 ~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~ 243 (932)
T KOG2053|consen 164 LLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQ 243 (932)
T ss_pred cccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChH
Confidence 11233456667777777632 222 23333444445566667777777
Q ss_pred HHHHHHHHHHHhCCCc
Q 002273 243 SAIACYERCLAVSPNF 258 (944)
Q Consensus 243 ~A~~~~~~al~~~p~~ 258 (944)
+-.+...+++...+++
T Consensus 244 ~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 244 ELFELSSRLLEKGNDD 259 (932)
T ss_pred HHHHHHHHHHHhCCcc
Confidence 7777777777777776
No 200
>PHA01633 putative glycosyl transferase group 1
Probab=98.92 E-value=2.5e-08 Score=107.27 Aligned_cols=96 Identities=21% Similarity=0.250 Sum_probs=76.0
Q ss_pred CeEEEecCC--CCcCCHHHHHHHHHHHhHcCC----ceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEcc---CccC
Q 002273 682 FITFGSFNN--LAKITPKVLQVWARILCAVPN----SRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLP---LILL 752 (944)
Q Consensus 682 ~~~f~~~~~--~~K~~~~~~~~~~~il~~~p~----~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~---~~~~ 752 (944)
.++|+++.+ ..|..+.++++|.++.+..|+ .+|++.|. ..+.++++ .++|.|++ .++
T Consensus 148 ~~~i~~vGRl~~~KG~~~LI~A~~~L~~~~p~~~~~i~l~ivG~------------~~~~~l~l-~~~V~f~g~~G~~~- 213 (335)
T PHA01633 148 TIKFGIVSGLTKRKNMDLMLQVFNELNTKYPDIAKKIHFFVISH------------KQFTQLEV-PANVHFVAEFGHNS- 213 (335)
T ss_pred CeEEEEEeCCccccCHHHHHHHHHHHHHhCCCccccEEEEEEcH------------HHHHHcCC-CCcEEEEecCCCCC-
Confidence 356777775 499999999999999988886 36766642 12356777 58999985 433
Q ss_pred cHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEec
Q 002273 753 NHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTM 791 (944)
Q Consensus 753 ~~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~ 791 (944)
..+....|..+|++|-|.-+ +.|.+.+|||+||+|||+-
T Consensus 214 ~~dl~~~y~~aDifV~PS~~EgfGlvlLEAMA~G~PVVas 253 (335)
T PHA01633 214 REYIFAFYGAMDFTIVPSGTEGFGMPVLESMAMGTPVIHQ 253 (335)
T ss_pred HHHHHHHHHhCCEEEECCccccCCHHHHHHHHcCCCEEEc
Confidence 57888999999999887755 8899999999999999983
No 201
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=98.91 E-value=4.2e-08 Score=110.59 Aligned_cols=262 Identities=11% Similarity=0.119 Sum_probs=147.8
Q ss_pred HHHHHHhHhCCccEEEecCCCCCCCchhhhccCC--ccee--eecccCCCCCCCCCccEEEecCCCCCccccc------c
Q 002273 579 KKVAAMVREDKIDILVELTGHTANNKLGMMACQP--APVQ--VTWIGYPNTTGLPTIDYRITDSLADPPETKQ------K 648 (944)
Q Consensus 579 ~~~a~~i~~d~idilvdl~g~t~~~~~~~~a~r~--ApvQ--~~~~G~p~t~g~~~~Dy~i~d~~~~p~~~~~------~ 648 (944)
..+.+.|++.++||+|-..+.. +-..+.+.+- -|+= ++..|.+...-.+.+|.+++-. ++... .
T Consensus 94 ~~l~~~l~~~~pD~Vi~~~~~~--~~~~~~~~~~~~ip~~~~~td~~~~~~~~~~~ad~i~~~s----~~~~~~l~~~gi 167 (380)
T PRK13609 94 KRLKLLLQAEKPDIVINTFPII--AVPELKKQTGISIPTYNVLTDFCLHKIWVHREVDRYFVAT----DHVKKVLVDIGV 167 (380)
T ss_pred HHHHHHHHHhCcCEEEEcChHH--HHHHHHHhcCCCCCeEEEeCCCCCCcccccCCCCEEEECC----HHHHHHHHHcCC
Confidence 5688899999999999432221 1111222222 2432 1112333333345677766431 11111 1
Q ss_pred cccceEEcCCCcc-ccCCCCCCCCCCCCCCCCC-CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCceEEEecCCCCCH
Q 002273 649 HVEELIRLPECFL-CYTPSPEAGPVCPTPALTN-GFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCD 724 (944)
Q Consensus 649 ~~e~~~~lp~~~~-~~~~~~~~~~~~~~~~~~~-~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~ 724 (944)
-.|++...+.... .|.+.......+...+++. ..+++...++. .|.-..+++.+ ...|+.++++++++ +.
T Consensus 168 ~~~ki~v~G~p~~~~f~~~~~~~~~~~~~~l~~~~~~il~~~G~~~~~k~~~~li~~l----~~~~~~~~viv~G~--~~ 241 (380)
T PRK13609 168 PPEQVVETGIPIRSSFELKINPDIIYNKYQLCPNKKILLIMAGAHGVLGNVKELCQSL----MSVPDLQVVVVCGK--NE 241 (380)
T ss_pred ChhHEEEECcccChHHcCcCCHHHHHHHcCCCCCCcEEEEEcCCCCCCcCHHHHHHHH----hhCCCcEEEEEeCC--CH
Confidence 1245544432110 1211111101112234443 34333333332 34444444443 34588888877542 23
Q ss_pred HHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecC-CCcccccchhH
Q 002273 725 SVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA-GSVHAHNVGVS 803 (944)
Q Consensus 725 ~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~-g~~~~~r~~~~ 803 (944)
..++.+++..+..+ ++|.|+|.+. +....|..+|+++. -+||.|.+|||++|+|||+.. ... .....+.
T Consensus 242 ~~~~~l~~~~~~~~---~~v~~~g~~~---~~~~l~~~aD~~v~---~~gg~t~~EA~a~g~PvI~~~~~~g-~~~~n~~ 311 (380)
T PRK13609 242 ALKQSLEDLQETNP---DALKVFGYVE---NIDELFRVTSCMIT---KPGGITLSEAAALGVPVILYKPVPG-QEKENAM 311 (380)
T ss_pred HHHHHHHHHHhcCC---CcEEEEechh---hHHHHHHhccEEEe---CCCchHHHHHHHhCCCEEECCCCCC-cchHHHH
Confidence 46677777666654 6899999864 34566788999983 367889999999999999842 111 1122233
Q ss_pred HHhhcCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 002273 804 LLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 866 (944)
Q Consensus 804 ~l~~~gl~~~v~~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 866 (944)
++...|+. ++..|.+++.+...+|.+|++.++++++..++.. .-++.+.+++.+++.+.
T Consensus 312 ~~~~~G~~-~~~~~~~~l~~~i~~ll~~~~~~~~m~~~~~~~~---~~~s~~~i~~~i~~~~~ 370 (380)
T PRK13609 312 YFERKGAA-VVIRDDEEVFAKTEALLQDDMKLLQMKEAMKSLY---LPEPADHIVDDILAENH 370 (380)
T ss_pred HHHhCCcE-EEECCHHHHHHHHHHHHCCHHHHHHHHHHHHHhC---CCchHHHHHHHHHHhhh
Confidence 44444553 3468999999999999999999999998887642 23588888888877664
No 202
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=98.90 E-value=6.7e-08 Score=108.71 Aligned_cols=265 Identities=12% Similarity=0.090 Sum_probs=151.7
Q ss_pred HHHHHHhHhCCccEEEecCCCCCCCchh--hhc-c-----CCcceeeeccc-C---CCCCCCCCccEEEecCCCCCccc-
Q 002273 579 KKVAAMVREDKIDILVELTGHTANNKLG--MMA-C-----QPAPVQVTWIG-Y---PNTTGLPTIDYRITDSLADPPET- 645 (944)
Q Consensus 579 ~~~a~~i~~d~idilvdl~g~t~~~~~~--~~a-~-----r~ApvQ~~~~G-~---p~t~g~~~~Dy~i~d~~~~p~~~- 645 (944)
..+.+.|++.++||+|-. |.-.++.+ ++. + ..-|+= +.+. + ....-.+.+|++++-.-..-...
T Consensus 90 ~~l~~~i~~~~pDvIi~t--hp~~~~~~~~~l~~~~~~~~~~~p~~-~~~tD~~~~~~~w~~~~~d~~~~~s~~~~~~l~ 166 (382)
T PLN02605 90 REVAKGLMKYKPDIIVSV--HPLMQHVPLRVLRWQGKELGKKIPFT-TVVTDLGTCHPTWFHKGVTRCFCPSEEVAKRAL 166 (382)
T ss_pred HHHHHHHHhcCcCEEEEe--CcCcccCHHHHHHHHhhccCCCCCEE-EEECCCCCcCcccccCCCCEEEECCHHHHHHHH
Confidence 467889999999999863 44333322 221 1 145543 2211 1 11233567888885211000000
Q ss_pred cccc-ccceEEcCCCc-cccCCCC-CCCCCCCCCCCCCCCeEEEecCC--CCcCCHHHHHHHHHHHh----HcCCceEE-
Q 002273 646 KQKH-VEELIRLPECF-LCYTPSP-EAGPVCPTPALTNGFITFGSFNN--LAKITPKVLQVWARILC----AVPNSRLV- 715 (944)
Q Consensus 646 ~~~~-~e~~~~lp~~~-~~~~~~~-~~~~~~~~~~~~~~~~~f~~~~~--~~K~~~~~~~~~~~il~----~~p~~~l~- 715 (944)
+... .+++...+... -.|.++. .....+...+++.+..+++.+.+ ..|....+++.+..++. ..|+.+++
T Consensus 167 ~~g~~~~ki~v~g~~v~~~f~~~~~~~~~~r~~~gl~~~~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~~~~~v 246 (382)
T PLN02605 167 KRGLEPSQIRVYGLPIRPSFARAVRPKDELRRELGMDEDLPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPIGQVVV 246 (382)
T ss_pred HcCCCHHHEEEECcccCHhhccCCCCHHHHHHHcCCCCCCcEEEEECCCcccccHHHHHHHHHHhhccccccCCCceEEE
Confidence 1112 25565554221 1121111 11112233566666666666664 36777788888776652 13666644
Q ss_pred EecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCc
Q 002273 716 VKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSV 795 (944)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~ 795 (944)
+.|.+ +..++++. +... ..+|.|+|.+. +....|+.+|+++-+ +||.|++|||++|+|||+..--.
T Consensus 247 i~G~~---~~~~~~L~----~~~~-~~~v~~~G~~~---~~~~l~~aaDv~V~~---~g~~ti~EAma~g~PvI~~~~~p 312 (382)
T PLN02605 247 ICGRN---KKLQSKLE----SRDW-KIPVKVRGFVT---NMEEWMGACDCIITK---AGPGTIAEALIRGLPIILNGYIP 312 (382)
T ss_pred EECCC---HHHHHHHH----hhcc-cCCeEEEeccc---cHHHHHHhCCEEEEC---CCcchHHHHHHcCCCEEEecCCC
Confidence 44433 23344443 3332 35799999875 456667889999953 47889999999999999854111
Q ss_pred ccccchhHHHhhcCCcccccCCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHH
Q 002273 796 HAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASD-VTALANLRMSLRDLMSKSPVCDGQNFALGLEST 864 (944)
Q Consensus 796 ~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~l~~d-~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~ 864 (944)
.....++-.+...|..- +..|+++..+...+|..| ++.+++|++..++... -.....++..+.+.
T Consensus 313 gqe~gn~~~i~~~g~g~-~~~~~~~la~~i~~ll~~~~~~~~~m~~~~~~~~~---~~a~~~i~~~l~~~ 378 (382)
T PLN02605 313 GQEEGNVPYVVDNGFGA-FSESPKEIARIVAEWFGDKSDELEAMSENALKLAR---PEAVFDIVHDLHEL 378 (382)
T ss_pred ccchhhHHHHHhCCcee-ecCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC---CchHHHHHHHHHHH
Confidence 11122344454456643 458999999999999998 9999999998887642 23456666655543
No 203
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.90 E-value=4e-08 Score=90.28 Aligned_cols=105 Identities=19% Similarity=0.193 Sum_probs=97.4
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC---HHHHHH
Q 002273 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTH 121 (944)
Q Consensus 48 ~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~ 121 (944)
++.++..|..+...|++++|+..|+++++.+|++ ..+++.+|.++...|++++|+..|++++..+|++ +.++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 4678999999999999999999999999999876 5789999999999999999999999999998875 678999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCChhH
Q 002273 122 CGILYKDEGRLVEAAESYHKALSADPSYKPA 152 (944)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 152 (944)
+|.++...|++++|+..++++++..|++..+
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 9999999999999999999999999987654
No 204
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.89 E-value=6.4e-07 Score=91.87 Aligned_cols=313 Identities=16% Similarity=0.106 Sum_probs=214.7
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHhCCHHHHHHHHHHHHhc----CCC--CHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVE---AHIGKGICLQMQNMGRLAFDSFSEAVKL----DPQ--NAC 117 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~--~~~ 117 (944)
.+...+..|..++...++++|+....+.+..-.+... .+-.+..+...+|.|++++...-..+.. +.. ..+
T Consensus 5 q~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~e 84 (518)
T KOG1941|consen 5 QTKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLE 84 (518)
T ss_pred hhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788999999999999999999999986544332 3334556778888888877655444432 211 236
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------H
Q 002273 118 AHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY------A 191 (944)
Q Consensus 118 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~ 191 (944)
++.+++..+.+..++.+++.+-+..+.+-...+. ..-+.+...+|..+...+.++++++.|+++++...++ .
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~--~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LEl 162 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAG--QLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLEL 162 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcc--cccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeee
Confidence 7888999999999999999988887776433221 1112345567888888899999999999999884332 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Q 002273 192 PAYYNLGVVYSELMQYDTALGCYEKAALERPM----------YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 261 (944)
Q Consensus 192 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 261 (944)
.++..||.+|....++++|+-+..++.++-.. ..-+++.++..+..+|..-.|.++.+++.++.-.
T Consensus 163 qvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~---- 238 (518)
T KOG1941|consen 163 QVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQ---- 238 (518)
T ss_pred ehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH----
Confidence 57889999999999999999999999876332 1246778888888999999999998887664211
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q 002273 262 KNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDM 341 (944)
Q Consensus 262 ~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 341 (944)
.|+ .| ........+|.+|...|+.+.
T Consensus 239 ----------~Gd--------------------------------ra------------~~arc~~~~aDIyR~~gd~e~ 264 (518)
T KOG1941|consen 239 ----------HGD--------------------------------RA------------LQARCLLCFADIYRSRGDLER 264 (518)
T ss_pred ----------hCC--------------------------------hH------------HHHHHHHHHHHHHHhcccHhH
Confidence 010 00 113445566677777777777
Q ss_pred HHHHHHHHHhhCCC------CHHHHHHHHHHHHHCCCH-----HHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHc
Q 002273 342 AIVFYELAFHFNPH------CAEACNNLGVIYKDRDNL-----DKAVECYQMALSIKPNF------SQSLNNLGVVYTVQ 404 (944)
Q Consensus 342 A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~-----~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~ 404 (944)
|..-|+.+...... ..+++...+.++....-. -.|++.-++++++...- -..+..++.+|..+
T Consensus 265 af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~ 344 (518)
T KOG1941|consen 265 AFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSK 344 (518)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhc
Confidence 77666666654211 134444555555443322 34777777777764332 34778889999888
Q ss_pred CCHHHHHHHHHHHHH
Q 002273 405 GKMDAAAEMIEKAIA 419 (944)
Q Consensus 405 g~~~~A~~~l~~al~ 419 (944)
|.-++-...+.++-+
T Consensus 345 gl~d~~~~h~~ra~~ 359 (518)
T KOG1941|consen 345 GLQDELRAHVVRAHE 359 (518)
T ss_pred cchhHHHHHHHHHHH
Confidence 887776666666543
No 205
>PRK10125 putative glycosyl transferase; Provisional
Probab=98.89 E-value=2.3e-08 Score=112.56 Aligned_cols=147 Identities=14% Similarity=0.083 Sum_probs=103.8
Q ss_pred CCeEEEecCC----CCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHH
Q 002273 681 GFITFGSFNN----LAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 756 (944)
Q Consensus 681 ~~~~f~~~~~----~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~ 756 (944)
+..+++.+.+ ..|..+.+++++..+ .++.+|+++|.+.. .. .++|.+.|...+..+.
T Consensus 240 ~~~~il~v~~~~~~~~Kg~~~li~A~~~l---~~~~~L~ivG~g~~----~~------------~~~v~~~g~~~~~~~l 300 (405)
T PRK10125 240 GKPKIAVVAHDLRYDGKTDQQLVREMMAL---GDKIELHTFGKFSP----FT------------AGNVVNHGFETDKRKL 300 (405)
T ss_pred CCCEEEEEEeccccCCccHHHHHHHHHhC---CCCeEEEEEcCCCc----cc------------ccceEEecCcCCHHHH
Confidence 3334555554 246667888877764 36789999886411 00 2568888877667788
Q ss_pred HHhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCccccc---------CCHHHHHHHHH
Q 002273 757 MQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA---------KNEDEYVQLAL 826 (944)
Q Consensus 757 ~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~---------~~~~~y~~~a~ 826 (944)
...|+.+|||+-|.-+ +.|+|.+|||+||+|||+ +++| |++|+|. .|.++..+
T Consensus 301 ~~~y~~aDvfV~pS~~Egfp~vilEAmA~G~PVVa-------t~~g-------G~~Eiv~~~~G~lv~~~d~~~La~--- 363 (405)
T PRK10125 301 MSALNQMDALVFSSRVDNYPLILCEALSIGVPVIA-------THSD-------AAREVLQKSGGKTVSEEEVLQLAQ--- 363 (405)
T ss_pred HHHHHhCCEEEECCccccCcCHHHHHHHcCCCEEE-------eCCC-------ChHHhEeCCcEEEECCCCHHHHHh---
Confidence 9999999999877766 889999999999999999 8888 7776662 35555554
Q ss_pred HHhcCHHHHHH-HH---HHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 002273 827 QLASDVTALAN-LR---MSLRDLMSKSPVCDGQNFALGLESTYRN 867 (944)
Q Consensus 827 ~l~~d~~~~~~-~r---~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 867 (944)
+.|++.+.+ ++ ...|++.. ..|+.+.++++++++|++
T Consensus 364 --~~~~~~~~~~~~~~~~~~r~~~~--~~fs~~~~~~~y~~lY~~ 404 (405)
T PRK10125 364 --LSKPEIAQAVFGTTLAEFSQRSR--AAYSGQQMLEEYVNFYQN 404 (405)
T ss_pred --ccCHHHHHHhhhhHHHHHHHHHH--HhCCHHHHHHHHHHHHHh
Confidence 245544443 22 33455543 349999999999999975
No 206
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.89 E-value=7.9e-07 Score=105.45 Aligned_cols=224 Identities=16% Similarity=0.116 Sum_probs=188.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhh
Q 002273 208 DTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV-SPNFEIAKNNMAIALTDLGTKTYGRALLLFRL 286 (944)
Q Consensus 208 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~ 286 (944)
.+..+.|++.+..+|+..-.|......+.+.++.++|.+..++++.. ++...+-..++..+|.++...
T Consensus 1441 pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~----------- 1509 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENA----------- 1509 (1710)
T ss_pred CcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHh-----------
Confidence 34556788888888988888888888888899999999999988864 555555555555555554432
Q ss_pred cCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 002273 287 NGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI 366 (944)
Q Consensus 287 ~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 366 (944)
-|.-+...+.|+++.+... ...++..|..+|...+++++|.++|+..++...+....|..++..
T Consensus 1510 ---------------yG~eesl~kVFeRAcqycd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~f 1573 (1710)
T KOG1070|consen 1510 ---------------YGTEESLKKVFERACQYCD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADF 1573 (1710)
T ss_pred ---------------hCcHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 2344666777888777642 246788899999999999999999999999988889999999999
Q ss_pred HHHCCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 002273 367 YKDRDNLDKAVECYQMALSIKPN--FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLA 444 (944)
Q Consensus 367 ~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA 444 (944)
++.+++-++|...+++|++.-|. +.+.....|.+-++.|+.+.+...|+..+..+|...+.|.-+...-.+.|+.+.+
T Consensus 1574 Ll~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~v 1653 (1710)
T KOG1070|consen 1574 LLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYV 1653 (1710)
T ss_pred HhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHH
Confidence 99999999999999999999887 7888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCC
Q 002273 445 IDAYEQCLKIDPDS 458 (944)
Q Consensus 445 ~~~~~~al~l~P~~ 458 (944)
...|++++.+.=.-
T Consensus 1654 R~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1654 RDLFERVIELKLSI 1667 (1710)
T ss_pred HHHHHHHHhcCCCh
Confidence 99999999875443
No 207
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.88 E-value=4.5e-08 Score=96.12 Aligned_cols=124 Identities=18% Similarity=0.205 Sum_probs=102.5
Q ss_pred HHhCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCH
Q 002273 58 LRSRNKFVDALALYEIVLEKDSGN--VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILYKDEGRL 132 (944)
Q Consensus 58 ~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~ 132 (944)
++-.+.|..+...+.+.++..+.+ ...++.+|.++...|++++|+..|++++.+.|+. +.++..+|.++...|++
T Consensus 9 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~ 88 (168)
T CHL00033 9 NFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEH 88 (168)
T ss_pred cccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCH
Confidence 344556777777777776666554 6778999999999999999999999999887653 45899999999999999
Q ss_pred HHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 002273 133 VEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYY 181 (944)
Q Consensus 133 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~ 181 (944)
++|+..+++++.+.|.....+..++.++..+|..+...|++++|+..+.
T Consensus 89 ~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 89 TKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHH
Confidence 9999999999999999998888888888888888878888775554443
No 208
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=5.2e-08 Score=99.44 Aligned_cols=122 Identities=22% Similarity=0.254 Sum_probs=102.7
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHH
Q 002273 339 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG---KMDAAAEMIE 415 (944)
Q Consensus 339 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~l~ 415 (944)
.++-+.-++.-+..+|++.+-|..||.+|+.+|++..|...|.+++++.|++++.+..+|.++..+. ...++...++
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 4566666777788888888888888888888888888888888888888888888888888877643 4568888999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChh
Q 002273 416 KAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 460 (944)
Q Consensus 416 ~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~ 460 (944)
+++..+|++..+.+.||..++..|++.+|...++..++..|.+..
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 999999999999999999999999999999999999988887654
No 209
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=98.88 E-value=7.1e-08 Score=108.66 Aligned_cols=160 Identities=13% Similarity=0.134 Sum_probs=113.5
Q ss_pred CcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCC
Q 002273 692 AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFP 771 (944)
Q Consensus 692 ~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~ 771 (944)
.|....+++.+ ++..|+.+++++++. .+..++.+.+.+ +. .++|.|.|.+. +....|..+|+++-
T Consensus 215 ~k~~~~li~~~---~~~~~~~~~vvv~G~--~~~l~~~l~~~~---~~-~~~v~~~G~~~---~~~~~~~~aDl~I~--- 279 (391)
T PRK13608 215 SKGFDTMITDI---LAKSANAQVVMICGK--SKELKRSLTAKF---KS-NENVLILGYTK---HMNEWMASSQLMIT--- 279 (391)
T ss_pred chhHHHHHHHH---HhcCCCceEEEEcCC--CHHHHHHHHHHh---cc-CCCeEEEeccc---hHHHHHHhhhEEEe---
Confidence 36555666654 445578888776543 223445555433 33 35899999863 56667788999984
Q ss_pred CCCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCC
Q 002273 772 YAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPV 851 (944)
Q Consensus 772 ~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~ 851 (944)
-+||.|+.|||++|+|||+..-..-.....+-++...|.. +++.|.++.++...+|.+|++.+++|++..++.. .-
T Consensus 280 k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~G~g-~~~~~~~~l~~~i~~ll~~~~~~~~m~~~~~~~~---~~ 355 (391)
T PRK13608 280 KPGGITISEGLARCIPMIFLNPAPGQELENALYFEEKGFG-KIADTPEEAIKIVASLTNGNEQLTNMISTMEQDK---IK 355 (391)
T ss_pred CCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhCCcE-EEeCCHHHHHHHHHHHhcCHHHHHHHHHHHHHhc---CC
Confidence 2578899999999999998631111234555667777776 3467999999999999999999999999998763 33
Q ss_pred CChHHHHHHHHHHHHHHHH
Q 002273 852 CDGQNFALGLESTYRNMWH 870 (944)
Q Consensus 852 ~~~~~~~~~~e~~~~~~~~ 870 (944)
++....+..+++.+..+-+
T Consensus 356 ~s~~~i~~~l~~l~~~~~~ 374 (391)
T PRK13608 356 YATQTICRDLLDLIGHSSQ 374 (391)
T ss_pred CCHHHHHHHHHHHhhhhhh
Confidence 8899999999988775544
No 210
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.88 E-value=1.2e-05 Score=83.72 Aligned_cols=296 Identities=19% Similarity=0.122 Sum_probs=172.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-HHHHHHHHHH
Q 002273 122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY-APAYYNLGVV 200 (944)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~ 200 (944)
-|.+....|+-..|.+.-.++-++-..+.+.. +...-++.....|+++.|.+.|+.++. +|+. .-.+..|-.-
T Consensus 90 tGliAagAGda~lARkmt~~~~~llssDqepL-----IhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyle 163 (531)
T COG3898 90 TGLIAAGAGDASLARKMTARASKLLSSDQEPL-----IHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLE 163 (531)
T ss_pred hhhhhhccCchHHHHHHHHHHHhhhhccchHH-----HHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHH
Confidence 45666678899999999888876655555542 233345556678999999999998876 3432 1122223233
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHhhhhhhhh
Q 002273 201 YSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE-IAKNNMAIALTDLGTKTYGR 279 (944)
Q Consensus 201 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~l~~~~~~~~~~ 279 (944)
-...|..+.|..+-+++....|.-+.++...-...+..|+++.|++..+......--.. .+....+.++.....
T Consensus 164 Aqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~----- 238 (531)
T COG3898 164 AQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM----- 238 (531)
T ss_pred HHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH-----
Confidence 35789999999999999999999998888888889999999999999887654321111 011111111110000
Q ss_pred HHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHH
Q 002273 280 ALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA 359 (944)
Q Consensus 280 a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 359 (944)
-....+...|...-.+++++.|+....-..-+..+++.|+..++-.+++.+.+..|. +.
T Consensus 239 -------------------s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-P~- 297 (531)
T COG3898 239 -------------------SLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-PD- 297 (531)
T ss_pred -------------------HHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-hH-
Confidence 011223455555566666666666655555666666666666666666666665554 21
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHH---HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002273 360 CNNLGVIYKDRDNLDKAVECYQM---ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 436 (944)
Q Consensus 360 ~~~la~~~~~~g~~~~A~~~~~~---al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~ 436 (944)
++.+|....--+.++.-+++ ...+.|++.+.....+..-+..|++..|..--+.+....|. ..++..|+.+-.
T Consensus 298 ---ia~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIee 373 (531)
T COG3898 298 ---IALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEE 373 (531)
T ss_pred ---HHHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHh
Confidence 22222222222223322322 23345555555555555555566666555555555555554 344555555544
Q ss_pred Hc-CCHHHHHHHHHHHHh
Q 002273 437 DA-GSISLAIDAYEQCLK 453 (944)
Q Consensus 437 ~~-g~~~eA~~~~~~al~ 453 (944)
.. |+-.++..++-++++
T Consensus 374 AetGDqg~vR~wlAqav~ 391 (531)
T COG3898 374 AETGDQGKVRQWLAQAVK 391 (531)
T ss_pred hccCchHHHHHHHHHHhc
Confidence 44 555555555555554
No 211
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.87 E-value=2.6e-08 Score=86.68 Aligned_cols=99 Identities=38% Similarity=0.623 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 002273 359 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 438 (944)
Q Consensus 359 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~ 438 (944)
+++.+|.++...|++++|+..++++++..|.+..++..+|.++...+++++|++.+++++...|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 45677777777888888888888888888877777888888888888888888888888888887777888888888888
Q ss_pred CCHHHHHHHHHHHHhhCCC
Q 002273 439 GSISLAIDAYEQCLKIDPD 457 (944)
Q Consensus 439 g~~~eA~~~~~~al~l~P~ 457 (944)
|++++|...++++++.+|+
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 8888888888888877763
No 212
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.86 E-value=9.9e-09 Score=83.90 Aligned_cols=67 Identities=43% Similarity=0.691 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCC
Q 002273 390 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG-SISLAIDAYEQCLKIDP 456 (944)
Q Consensus 390 ~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g-~~~eA~~~~~~al~l~P 456 (944)
++..+..+|.++...|++++|+.+|+++++.+|+++.+++++|.++..+| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45667777777777777777777777777777777777777777777777 57777777777777776
No 213
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.86 E-value=1.2e-07 Score=90.54 Aligned_cols=106 Identities=20% Similarity=0.227 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002273 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIY 235 (944)
Q Consensus 156 la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 235 (944)
.+..++..|..|-..|-..-|.--|.+++.+.|+.+.+++.+|..+...|+|+.|.+.|...++++|.+..+..+.|..+
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~ 143 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 143 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee
Confidence 46678888888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHH
Q 002273 236 KNRGDLESAIACYERCLAVSPNFEIA 261 (944)
Q Consensus 236 ~~~g~~~~A~~~~~~al~~~p~~~~~ 261 (944)
+--|++.-|.+-+.+-.+.+|+++.-
T Consensus 144 YY~gR~~LAq~d~~~fYQ~D~~DPfR 169 (297)
T COG4785 144 YYGGRYKLAQDDLLAFYQDDPNDPFR 169 (297)
T ss_pred eecCchHhhHHHHHHHHhcCCCChHH
Confidence 99999999999999999999998753
No 214
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.83 E-value=5.2e-08 Score=96.01 Aligned_cols=119 Identities=26% Similarity=0.398 Sum_probs=98.8
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 002273 321 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNL 397 (944)
Q Consensus 321 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 397 (944)
.....++.+|..+...|++++|+.+|+++++..|+. ..++..+|.++...|++++|+..++++++..|++...+..+
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 112 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNI 112 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 456678889999999999999999999998876653 46888899999999999999999999999999888888889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 002273 398 GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 459 (944)
Q Consensus 398 a~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~ 459 (944)
|.++...|+...+...+++++. .+++|++++++++..+|++.
T Consensus 113 g~~~~~~g~~~~a~~~~~~A~~--------------------~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 113 AVIYHKRGEKAEEAGDQDEAEA--------------------LFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred HHHHHHcCChHhHhhCHHHHHH--------------------HHHHHHHHHHHHHhhCchhH
Confidence 9999888888777766665543 26788999999999999873
No 215
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.83 E-value=7.5e-06 Score=92.15 Aligned_cols=308 Identities=15% Similarity=0.131 Sum_probs=185.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Q 002273 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEG 130 (944)
Q Consensus 51 ~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 130 (944)
-...|....+.|-.++|+.+|++.-. +-.+-..|...|.+++|.+..+.--++. --..|++.+..+...+
T Consensus 803 eakvAvLAieLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~ 872 (1416)
T KOG3617|consen 803 EAKVAVLAIELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARR 872 (1416)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhcccee--hhhhHHHHHHHHHhhc
Confidence 34456666777888888888887644 3345566778888888887665432222 2346888899999999
Q ss_pred CHHHHHHHHHHH----------HHcCCCChhHHhHH---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 002273 131 RLVEAAESYHKA----------LSADPSYKPAAECL---AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNL 197 (944)
Q Consensus 131 ~~~~A~~~~~~a----------l~~~p~~~~~~~~l---a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 197 (944)
+.+.|+++|+++ +..+|...+.+... -.+|...|..+...|+.+.|+.+|..+- -|+.+
T Consensus 873 Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~--------D~fs~ 944 (1416)
T KOG3617|consen 873 DIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK--------DYFSM 944 (1416)
T ss_pred cHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh--------hhhhh
Confidence 999999999886 22233221111000 1235556667777777777777777643 35566
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHH
Q 002273 198 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAV------SPNFEIAKNNMAIALTD 271 (944)
Q Consensus 198 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~l~~ 271 (944)
-.+..-+|+.++|-.+.++ ..+..+.+.+|+.|...|++.+|+..|.++-.. ...+. ..-.++.+...
T Consensus 945 VrI~C~qGk~~kAa~iA~e-----sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd-~~d~L~nlal~ 1018 (1416)
T KOG3617|consen 945 VRIKCIQGKTDKAARIAEE-----SGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKEND-MKDRLANLALM 1018 (1416)
T ss_pred eeeEeeccCchHHHHHHHh-----cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHhh
Confidence 6666677777777665544 356678899999999999999999988876433 22211 01111111111
Q ss_pred hhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHH--------HH--HhCC-CCHHHHHHHHHHHHHcCChH
Q 002273 272 LGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKK--------AL--YYNW-HYADAMYNLGVAYGEMLKFD 340 (944)
Q Consensus 272 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~--------al--~~~p-~~~~~~~~la~~~~~~g~~~ 340 (944)
.+..+...+...+... .........+|.+.|.+.+|++..=+ ++ .+++ .++..+..-+..+....+|+
T Consensus 1019 s~~~d~v~aArYyEe~-g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qye 1097 (1416)
T KOG3617|consen 1019 SGGSDLVSAARYYEEL-GGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYE 1097 (1416)
T ss_pred cCchhHHHHHHHHHHc-chhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHH
Confidence 1222122222222111 11222233456666666666654321 11 1233 36778888888888888888
Q ss_pred HHHHHHHH------HHhh----------------CCC---------CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q 002273 341 MAIVFYEL------AFHF----------------NPH---------CAEACNNLGVIYKDRDNLDKAVECYQMA 383 (944)
Q Consensus 341 ~A~~~~~~------al~~----------------~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~a 383 (944)
+|..++-. ++.+ .|. ...++..+|.++.++|.|..|-+-|.+|
T Consensus 1098 kAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1098 KAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 88776543 3332 111 1356777888888888888887777665
No 216
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.83 E-value=7.4e-08 Score=94.55 Aligned_cols=99 Identities=22% Similarity=0.208 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHCCCHHHHHH
Q 002273 304 DINQGVAYYKKALYYNWHY--ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVE 378 (944)
Q Consensus 304 ~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~ 378 (944)
.+..+...+...++..+.. ...++.+|.++...|++++|+..|++++.+.++. +.++.++|.++...|++++|++
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~ 93 (168)
T CHL00033 14 TFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALE 93 (168)
T ss_pred ccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 3444444444443333332 3344555555555555555555555555443331 2345555555555555555555
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHH
Q 002273 379 CYQMALSIKPNFSQSLNNLGVVYT 402 (944)
Q Consensus 379 ~~~~al~~~p~~~~~~~~la~~~~ 402 (944)
+|+++++++|.....+.++|.++.
T Consensus 94 ~~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 94 YYFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHH
Confidence 555555555555555555555544
No 217
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.83 E-value=8.5e-06 Score=84.20 Aligned_cols=152 Identities=32% Similarity=0.461 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHcCChHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHCCCHHHHHHHHH
Q 002273 306 NQGVAYYKKALYYNWHYADAMYNLGV-AYGEMLKFDMAIVFYELAFHFNP---HCAEACNNLGVIYKDRDNLDKAVECYQ 381 (944)
Q Consensus 306 ~~A~~~~~~al~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~ 381 (944)
.+++..+..++...+.........+. ++...|++++|...+++++...| .....+...+..+...+++++|+..+.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 191 (291)
T COG0457 112 EEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLE 191 (291)
T ss_pred HHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHH
Confidence 44455555554444443333333333 67777777777777777766555 345555566666677778888888888
Q ss_pred HHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002273 382 MALSIKPN-FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 457 (944)
Q Consensus 382 ~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~ 457 (944)
+++...+. ....+..++..+...+++++|+..+.+++...|.....+..++..+...++++++...+.+++...|.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 192 KALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 88888777 57778888888888888888888888888887776667777777777667788888888888888886
No 218
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.83 E-value=9.8e-08 Score=97.45 Aligned_cols=123 Identities=20% Similarity=0.138 Sum_probs=114.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC---CHHHHHHH
Q 002273 303 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD---NLDKAVEC 379 (944)
Q Consensus 303 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~ 379 (944)
.+.++.+.-++.-+..+|++.+-|..||.+|...|+++.|...|.+++++.|++++.+..+|.++..+. ...++...
T Consensus 136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 346778888999999999999999999999999999999999999999999999999999999887643 56799999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 002273 380 YQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 425 (944)
Q Consensus 380 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~ 425 (944)
++++++.+|.+..+.+.||..+++.|+|.+|+..++..++..|.+.
T Consensus 216 l~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 216 LRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 9999999999999999999999999999999999999999987653
No 219
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.82 E-value=2e-07 Score=88.91 Aligned_cols=117 Identities=22% Similarity=0.174 Sum_probs=101.6
Q ss_pred HcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHH
Q 002273 335 EMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMD 408 (944)
Q Consensus 335 ~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~ 408 (944)
..++...+...+++.++.+|+. ..+.+.+|.++...|++++|+..|++++...|+. ..+.+.++.++...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 5788889988999999999988 5678889999999999999999999999987665 347888999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002273 409 AAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 452 (944)
Q Consensus 409 ~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al 452 (944)
+|+..++.. ...+-.+.++..+|.+|...|++++|+..|++++
T Consensus 103 ~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 103 EALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 999999763 3344457788899999999999999999999875
No 220
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.81 E-value=1.8e-05 Score=81.77 Aligned_cols=225 Identities=30% Similarity=0.408 Sum_probs=121.4
Q ss_pred CCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCH
Q 002273 130 GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK--IDPHYAPAYYNLGVVYSELMQY 207 (944)
Q Consensus 130 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~ 207 (944)
+.+..+...+...+...+.. .........+..+...+++..+...+...+. ..+.....+...+..+...+++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (291)
T COG0457 37 GELAEALELLEEALELLPNS-----DLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKY 111 (291)
T ss_pred hhHHHHHHHHHHHHhcCccc-----cchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhH
Confidence 45555555555555554442 0111244555566666777777777777665 5666677777777777777777
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHhhhhhhhhHHHH
Q 002273 208 DTALGCYEKAALERPMYAEAYCNMGV-IYKNRGDLESAIACYERCLAVSPN---FEIAKNNMAIALTDLGTKTYGRALLL 283 (944)
Q Consensus 208 ~~A~~~~~~al~~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~l~~~~~~~~~~a~~~ 283 (944)
..++..+.+++...+.........+. ++...|++++|...+++++...|. ...........
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 176 (291)
T COG0457 112 EEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGAL--------------- 176 (291)
T ss_pred HHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhH---------------
Confidence 77777777777766665444455555 777788888888888877665542 11111111111
Q ss_pred HhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q 002273 284 FRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWH-YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNN 362 (944)
Q Consensus 284 ~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 362 (944)
+...+++++++..+.+++...+. ....+..++..+...+++++|+..+..++...|.....+..
T Consensus 177 ---------------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 241 (291)
T COG0457 177 ---------------LEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYN 241 (291)
T ss_pred ---------------HHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhh
Confidence 11223444555555555554444 34444444444444444445555554444444443333444
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCC
Q 002273 363 LGVIYKDRDNLDKAVECYQMALSIKPN 389 (944)
Q Consensus 363 la~~~~~~g~~~~A~~~~~~al~~~p~ 389 (944)
++..+...+.++++...+.+++...|.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 242 LALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 444444333444444444444444443
No 221
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.81 E-value=2.8e-07 Score=98.51 Aligned_cols=109 Identities=21% Similarity=0.272 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHC-CCHHHHHHHHHHHHhhCC--CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----
Q 002273 357 AEACNNLGVIYKDR-DNLDKAVECYQMALSIKP--NF----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY----- 424 (944)
Q Consensus 357 ~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p--~~----~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~----- 424 (944)
...+..+|.+|... |++++|+++|++|+++.. +. ...+..+|.++...|+|++|++.|++.....-++
T Consensus 114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~ 193 (282)
T PF14938_consen 114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKY 193 (282)
T ss_dssp HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccch
Confidence 44566778888888 899999999999988732 11 3477889999999999999999999998753221
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhhH
Q 002273 425 --AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 465 (944)
Q Consensus 425 --~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~ 465 (944)
.+.++..+.|+...|+...|.+.+++....+|.........
T Consensus 194 ~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 194 SAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 24566788899999999999999999999999877665544
No 222
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=98.81 E-value=5.9e-08 Score=113.05 Aligned_cols=160 Identities=17% Similarity=0.092 Sum_probs=117.7
Q ss_pred CCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHH
Q 002273 680 NGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 757 (944)
Q Consensus 680 ~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~ 757 (944)
.+.++++.+.|+ .|..+.+++++.++.+. +.+|+++|.+ .+...+.+.+...+. .++|+|.+... .....
T Consensus 294 ~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~--~~~lvi~G~g--~~~~~~~~~~~~~~~---~~~v~~~~~~~-~~~~~ 365 (476)
T cd03791 294 PDAPLFGFVGRLTEQKGIDLLLEALPELLEL--GGQLVILGSG--DPEYEEALRELAARY---PGRVAVLIGYD-EALAH 365 (476)
T ss_pred CCCCEEEEEeeccccccHHHHHHHHHHHHHc--CcEEEEEecC--CHHHHHHHHHHHHhC---CCcEEEEEeCC-HHHHH
Confidence 556678877765 79999999999998864 3889998865 334556666665554 57888766554 45555
Q ss_pred HhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccc----------------cCCHHH
Q 002273 758 QAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLI----------------AKNEDE 820 (944)
Q Consensus 758 ~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v----------------~~~~~~ 820 (944)
..|+.+||+|-|+-+ +.|.+.+|||++|+|||+ +++| |++|+| ..|.++
T Consensus 366 ~~~~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~-------~~~g-------g~~e~v~~~~~~~~~~~G~~~~~~~~~~ 431 (476)
T cd03791 366 LIYAGADFFLMPSRFEPCGLTQMYAMRYGTVPIV-------RATG-------GLADTVIDYNEDTGEGTGFVFEGYNADA 431 (476)
T ss_pred HHHHhCCEEECCCCCCCCcHHHHHHhhCCCCCEE-------CcCC-------CccceEeCCcCCCCCCCeEEeCCCCHHH
Confidence 688999999998876 778999999999999998 6666 554443 246777
Q ss_pred HHHHHHHHh---cCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 002273 821 YVQLALQLA---SDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 866 (944)
Q Consensus 821 y~~~a~~l~---~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 866 (944)
+.+...++. .+++.+.+++++..+ ..|+++.+++++++.|+
T Consensus 432 l~~~i~~~l~~~~~~~~~~~~~~~~~~-----~~fsw~~~a~~~~~~y~ 475 (476)
T cd03791 432 LLAALRRALALYRDPEAWRKLQRNAMA-----QDFSWDRSAKEYLELYR 475 (476)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHhc-----cCCChHHHHHHHHHHHh
Confidence 777776655 466666665554432 24999999999999986
No 223
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=2.3e-06 Score=84.92 Aligned_cols=169 Identities=13% Similarity=0.040 Sum_probs=113.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 002273 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 269 (944)
Q Consensus 190 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l 269 (944)
+......-|.+|...+++++|++...+. .+.++...-..++.++.+.+-|.+.++++.+++.+ .....++.++
T Consensus 107 n~i~~l~aa~i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided--~tLtQLA~aw 179 (299)
T KOG3081|consen 107 NLIDLLLAAIIYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQIDED--ATLTQLAQAW 179 (299)
T ss_pred hHHHHHHhhHHhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH--HHHHHHHHHH
Confidence 3345556678888999999998887763 34566666778888899999999999998877654 3344455555
Q ss_pred HHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002273 270 TDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELA 349 (944)
Q Consensus 270 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 349 (944)
..+... .+++.+|.-+|++.-+..+..+.....++.++..++++++|...++.+
T Consensus 180 v~la~g--------------------------gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~ea 233 (299)
T KOG3081|consen 180 VKLATG--------------------------GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEA 233 (299)
T ss_pred HHHhcc--------------------------chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHH
Confidence 544322 334567777777777666666677777777777777777777777777
Q ss_pred HhhCCCCHHHHHHHHHHHHHCCCHHHHH-HHHHHHHhhCCCCH
Q 002273 350 FHFNPHCAEACNNLGVIYKDRDNLDKAV-ECYQMALSIKPNFS 391 (944)
Q Consensus 350 l~~~p~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~~ 391 (944)
+..++++++.+.++..+-...|.-.++. +.+.+....+|+++
T Consensus 234 L~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 234 LDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred HhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 7777777777777766666666554443 34444444455543
No 224
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.80 E-value=2.9e-09 Score=107.65 Aligned_cols=108 Identities=19% Similarity=0.166 Sum_probs=100.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 002273 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDE 129 (944)
Q Consensus 50 ~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 129 (944)
.+-..|+.|+++|+|++|+.+|.+.+..+|.|+..+.+.+.+|+++..+..|...+..++.++.....+|...+..-..+
T Consensus 99 EiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~L 178 (536)
T KOG4648|consen 99 EIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESL 178 (536)
T ss_pred HHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCChhHHhHHH
Q 002273 130 GRLVEAAESYHKALSADPSYKPAAECLA 157 (944)
Q Consensus 130 g~~~~A~~~~~~al~~~p~~~~~~~~la 157 (944)
|...+|.+.++.++++.|++.+....++
T Consensus 179 g~~~EAKkD~E~vL~LEP~~~ELkK~~a 206 (536)
T KOG4648|consen 179 GNNMEAKKDCETVLALEPKNIELKKSLA 206 (536)
T ss_pred hhHHHHHHhHHHHHhhCcccHHHHHHHH
Confidence 9999999999999999999776544443
No 225
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.80 E-value=2.4e-06 Score=101.54 Aligned_cols=222 Identities=12% Similarity=0.026 Sum_probs=174.5
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCChhHHhHHHHHHHHHHHHHHHcCChHHH
Q 002273 98 GRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSA-DPSYKPAAECLAIVLTDLGTSLKLAGNTQDG 176 (944)
Q Consensus 98 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A 176 (944)
-.+..+.|++.+..+|+....|..+...+.+.++.++|.+..++|+.. ++...+-..++-.+|.++-+ .-|.-+.-
T Consensus 1440 ~pesaeDferlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn---~yG~eesl 1516 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLEN---AYGTEESL 1516 (1710)
T ss_pred CCcCHHHHHHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHH---hhCcHHHH
Confidence 344567788889999999999999999999999999999999999974 55544444444444554443 34677778
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 002273 177 IQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP 256 (944)
Q Consensus 177 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 256 (944)
.+.|++|-+.. +...++..|..+|...+++++|.++|+..++...+....|..++..++++++-+.|...+++|++.-|
T Consensus 1517 ~kVFeRAcqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lP 1595 (1710)
T KOG1070|consen 1517 KKVFERACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLP 1595 (1710)
T ss_pred HHHHHHHHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcc
Confidence 88888887753 23567888999999999999999999999999888899999999999999999999999999999888
Q ss_pred C--cHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002273 257 N--FEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYG 334 (944)
Q Consensus 257 ~--~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 334 (944)
. +.......+.+ -++.|+.+.+..+|+..+..+|...+.|.-+...-.
T Consensus 1596 k~eHv~~IskfAqL------------------------------EFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~ei 1645 (1710)
T KOG1070|consen 1596 KQEHVEFISKFAQL------------------------------EFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEI 1645 (1710)
T ss_pred hhhhHHHHHHHHHH------------------------------HhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHH
Confidence 7 33333333322 344566688888888888888888888888888888
Q ss_pred HcCChHHHHHHHHHHHhhC
Q 002273 335 EMLKFDMAIVFYELAFHFN 353 (944)
Q Consensus 335 ~~g~~~~A~~~~~~al~~~ 353 (944)
+.|+.+.+..+|++++.+.
T Consensus 1646 k~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1646 KHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred ccCCHHHHHHHHHHHHhcC
Confidence 8888888888888887764
No 226
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.79 E-value=1.8e-07 Score=107.23 Aligned_cols=142 Identities=22% Similarity=0.202 Sum_probs=118.4
Q ss_pred hCCCCHHHH--HHHHHHHHHcCC---hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC--------CCHHHHHHHHHHHH
Q 002273 318 YNWHYADAM--YNLGVAYGEMLK---FDMAIVFYELAFHFNPHCAEACNNLGVIYKDR--------DNLDKAVECYQMAL 384 (944)
Q Consensus 318 ~~p~~~~~~--~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al 384 (944)
..|.+..+| +..|..+...++ ..+|+.+|+++++++|+++.++..++.++... .+..++.+..++++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 345565554 445655655544 78999999999999999999999988877553 23456666777766
Q ss_pred hh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChh
Q 002273 385 SI--KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 460 (944)
Q Consensus 385 ~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~ 460 (944)
.+ +|..+.++..+|..+...|++++|...++++++++|+ ..+|..+|.++...|+.++|++.|++|+.++|.++.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 64 7777889999999999999999999999999999995 889999999999999999999999999999999885
No 227
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=98.79 E-value=1.1e-08 Score=96.63 Aligned_cols=128 Identities=15% Similarity=0.243 Sum_probs=86.9
Q ss_pred CeEEEecCCC--CcCCHHHHH-HHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHH
Q 002273 682 FITFGSFNNL--AKITPKVLQ-VWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 758 (944)
Q Consensus 682 ~~~f~~~~~~--~K~~~~~~~-~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 758 (944)
.++||.+++. .|-...+++ +|.++.++.|+..|.+.|... + ++.+. ..++|.|.|.+ +++..
T Consensus 2 ~~~i~~~g~~~~~k~~~~li~~~~~~l~~~~p~~~l~i~G~~~--~----~l~~~------~~~~v~~~g~~---~e~~~ 66 (135)
T PF13692_consen 2 ILYIGYLGRIRPDKGLEELIEAALERLKEKHPDIELIIIGNGP--D----ELKRL------RRPNVRFHGFV---EELPE 66 (135)
T ss_dssp -EEEE--S-SSGGGTHHHHHH-HHHHHHHHSTTEEEEEECESS-------HHCCH------HHCTEEEE-S----HHHHH
T ss_pred cccccccccccccccccchhhhHHHHHHHHCcCEEEEEEeCCH--H----HHHHh------cCCCEEEcCCH---HHHHH
Confidence 4678888866 477788999 999999999999999987642 1 23222 24699999997 58999
Q ss_pred hcccccEEecCCCC--CCcccHHHhhhcCCcEEecCCCcccccch-hHHHhhcCCcccccCCHHHHHHHHHHHhcC
Q 002273 759 AYSLMDISLDTFPY--AGTTTTCESLYMGVPCVTMAGSVHAHNVG-VSLLTKVGLKHLIAKNEDEYVQLALQLASD 831 (944)
Q Consensus 759 ~~~~~Di~Ld~~~~--~~~~t~~eal~~gvPvvt~~g~~~~~r~~-~~~l~~~gl~~~v~~~~~~y~~~a~~l~~d 831 (944)
.++.+||+|.|+.. +.+++.+|+|++|+|||+ ++.+ ..+....|..-++..|.+++++...+|..|
T Consensus 67 ~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~-------~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 67 ILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIA-------SDNGAEGIVEEDGCGVLVANDPEELAEAIERLLND 135 (135)
T ss_dssp HHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEE-------EHHHCHCHS---SEEEE-TT-HHHHHHHHHHHHH-
T ss_pred HHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEE-------CCcchhhheeecCCeEEECCCHHHHHHHHHHHhcC
Confidence 99999999999865 346799999999999999 4332 223333456667789999999999998876
No 228
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.79 E-value=2.6e-07 Score=96.18 Aligned_cols=107 Identities=20% Similarity=0.203 Sum_probs=97.8
Q ss_pred CChHHHHHHHHHH-HhCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC---CHHH
Q 002273 46 FEGKDALSYANIL-RSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ---NACA 118 (944)
Q Consensus 46 ~~~~~~~~~A~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~ 118 (944)
.+....+..|..+ +..|+|++|+..|+++++..|++ +.+++.+|.+|+..|++++|+..|+++++..|+ .+++
T Consensus 140 ~~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dA 219 (263)
T PRK10803 140 GDANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADA 219 (263)
T ss_pred CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence 3568888898877 66899999999999999999987 589999999999999999999999999998877 4788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhH
Q 002273 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPA 152 (944)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 152 (944)
++.+|.++..+|++++|+..|+++++.+|+...+
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 9999999999999999999999999999997654
No 229
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.78 E-value=2.6e-08 Score=81.41 Aligned_cols=67 Identities=36% Similarity=0.602 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 002273 356 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG-KMDAAAEMIEKAIAANP 422 (944)
Q Consensus 356 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~l~~al~~~p 422 (944)
++..|..+|.++...|++++|+.+|+++++++|+++.+++++|.++..+| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 35566666666666667777777777777766666667777777776666 56677777777666665
No 230
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.78 E-value=9.5e-07 Score=84.44 Aligned_cols=199 Identities=17% Similarity=0.117 Sum_probs=148.1
Q ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 002273 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (944)
Q Consensus 46 ~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (944)
..+.-+++.|..|-..|-+.-|.--|.+++.+.|+.++++..+|..+...|+++.|.+.|...++++|....+..+.|..
T Consensus 63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~ 142 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA 142 (297)
T ss_pred HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee
Confidence 45667788888888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 002273 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM 205 (944)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 205 (944)
++--|++.-|.+.+.+-.+.+|+++--.. |..+ -...-+..+|...+.+-.+...+....|+..+. .+|
T Consensus 143 ~YY~gR~~LAq~d~~~fYQ~D~~DPfR~L-----WLYl---~E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~---yLg 211 (297)
T COG4785 143 LYYGGRYKLAQDDLLAFYQDDPNDPFRSL-----WLYL---NEQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEF---YLG 211 (297)
T ss_pred eeecCchHhhHHHHHHHHhcCCCChHHHH-----HHHH---HHhhCCHHHHHHHHHHHHHhccHhhhhHHHHHH---HHh
Confidence 99999999999999999999999875311 1111 123346677776654433333322333332222 223
Q ss_pred CHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 002273 206 QYDTALGCYEKAALERPMY-------AEAYCNMGVIYKNRGDLESAIACYERCLAVSP 256 (944)
Q Consensus 206 ~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 256 (944)
+..+ ...++++.....++ .++++.+|..+...|+.++|...|+-++..+-
T Consensus 212 kiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 212 KISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred hccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 2221 22334443333322 46889999999999999999999999887543
No 231
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.78 E-value=7.2e-08 Score=83.87 Aligned_cols=99 Identities=31% Similarity=0.432 Sum_probs=94.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 002273 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDE 129 (944)
Q Consensus 50 ~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 129 (944)
.++.+|..++..|++++|+..++++++..|.+..++..+|.++...+++++|++.++++++..|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCC
Q 002273 130 GRLVEAAESYHKALSADPS 148 (944)
Q Consensus 130 g~~~~A~~~~~~al~~~p~ 148 (944)
|++++|...+.++++..|+
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 9999999999999987763
No 232
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.77 E-value=0.00054 Score=74.73 Aligned_cols=422 Identities=12% Similarity=0.037 Sum_probs=260.5
Q ss_pred CCCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHH-
Q 002273 42 TLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT- 120 (944)
Q Consensus 42 ~~~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~- 120 (944)
...|.+...|+.+.+.+..+ .+++....|++.+...|..+.+|.......+..++|+.-.++|.+++..-= +.+.|.
T Consensus 14 e~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL-nlDLW~l 91 (656)
T KOG1914|consen 14 EENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL-NLDLWKL 91 (656)
T ss_pred hcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh-hHhHHHH
Confidence 56788999999999888777 999999999999999999999999999999999999999999999986432 234443
Q ss_pred HHHHHHHHcCCHHHHHHH----HHHHHH---cCCCChhHHhHHHHHHHH---HHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 002273 121 HCGILYKDEGRLVEAAES----YHKALS---ADPSYKPAAECLAIVLTD---LGTSLKLAGNTQDGIQKYYEALKIDPHY 190 (944)
Q Consensus 121 ~la~~~~~~g~~~~A~~~----~~~al~---~~p~~~~~~~~la~~~~~---lg~~~~~~g~~~~A~~~~~~al~~~p~~ 190 (944)
.+..+-...++...+... |+-++. .++.....|......+.. .|. +..+.+.+...+.|++++..--.+
T Consensus 92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk-~ee~QRI~~vRriYqral~tPm~n 170 (656)
T KOG1914|consen 92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGK-YEENQRITAVRRIYQRALVTPMHN 170 (656)
T ss_pred HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHccccccc-HHHHHHHHHHHHHHHHHhcCcccc
Confidence 233444445555444333 333333 233333333332222111 222 233447778888999998753333
Q ss_pred HH-HHHH-----------HH--HHHHHcCCHHHHHHHHHHHHHhC-------CC-----------CHHHHHHHHHHHHHc
Q 002273 191 AP-AYYN-----------LG--VVYSELMQYDTALGCYEKAALER-------PM-----------YAEAYCNMGVIYKNR 238 (944)
Q Consensus 191 ~~-~~~~-----------la--~~~~~~g~~~~A~~~~~~al~~~-------p~-----------~~~~~~~la~~~~~~ 238 (944)
.+ .|.. .| .+-.....|..|...+++..... |. ..+.|.++...-...
T Consensus 171 lEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksN 250 (656)
T KOG1914|consen 171 LEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSN 250 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcC
Confidence 22 1111 11 11223345667777777664421 11 112233332222111
Q ss_pred C------C--HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHH
Q 002273 239 G------D--LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVA 310 (944)
Q Consensus 239 g------~--~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~ 310 (944)
+ . ...-.-.|++++..-+-.++.|+..+..+...++... ..++.-.....-+++..
T Consensus 251 pL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~----------------~~~d~~~a~~~t~e~~~ 314 (656)
T KOG1914|consen 251 PLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLT----------------EKGDVPDAKSLTDEAAS 314 (656)
T ss_pred CcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHH----------------HhcccccchhhHHHHHH
Confidence 1 1 1122335677777777777788777776666554200 00000011112367888
Q ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 002273 311 YYKKALYYNW-HYADAMYNLGVAYGEMLK---FDMAIVFYELAFHFNPHC-AEACNNLGVIYKDRDNLDKAVECYQMALS 385 (944)
Q Consensus 311 ~~~~al~~~p-~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~ 385 (944)
+|++++...- .+...++.++..-...-+ ++.....+++++.+...+ .-++..+-..-.+..-.+.|...|.+|-+
T Consensus 315 ~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~ 394 (656)
T KOG1914|consen 315 IYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKARE 394 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 8888876432 234455555544433333 777788888888774433 34566666666677778899999999987
Q ss_pred hCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCChhhh
Q 002273 386 IKPNFSQSLNNLGVV-YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI--DPDSRNAG 462 (944)
Q Consensus 386 ~~p~~~~~~~~la~~-~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l--~P~~~~a~ 462 (944)
..-....++..-|.+ |...++.+-|...|+-.+...++.+..-+.....+...|+-..|...|++++.. .|+...-.
T Consensus 395 ~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~I 474 (656)
T KOG1914|consen 395 DKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEI 474 (656)
T ss_pred ccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHH
Confidence 655444444444443 567899999999999999999999999888899999999999999999999987 55544333
Q ss_pred hhHHHHhhhccCCChHHHHHH
Q 002273 463 QNRLLAMNYINEGHDDKLFEA 483 (944)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~ 483 (944)
+.+.+... ..-|+....++.
T Consensus 475 w~r~l~yE-S~vGdL~si~~l 494 (656)
T KOG1914|consen 475 WDRMLEYE-SNVGDLNSILKL 494 (656)
T ss_pred HHHHHHHH-HhcccHHHHHHH
Confidence 34333221 233555544433
No 233
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.77 E-value=2.3e-07 Score=91.45 Aligned_cols=73 Identities=26% Similarity=0.371 Sum_probs=47.2
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhH
Q 002273 80 GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPA 152 (944)
Q Consensus 80 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 152 (944)
.....++.+|..+...|++++|+.+|+++++..|+. ..++..+|.++...|++++|+..++++++..|++...
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 108 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSA 108 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHH
Confidence 345566666666666677777777777666655432 3466666777777777777777777777766665544
No 234
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=1.8e-07 Score=98.70 Aligned_cols=123 Identities=23% Similarity=0.223 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002273 324 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 403 (944)
Q Consensus 324 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 403 (944)
......|..|++.|+|..|...|++++..-.... .-+.++..... ++ ...++.|++.++.+
T Consensus 209 ~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~------------~~~~ee~~~~~--~~-----k~~~~lNlA~c~lK 269 (397)
T KOG0543|consen 209 DRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRR------------SFDEEEQKKAE--AL-----KLACHLNLAACYLK 269 (397)
T ss_pred HHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccc------------cCCHHHHHHHH--HH-----HHHHhhHHHHHHHh
Confidence 3455678888888888888888888876522110 00001100000 00 02345666666666
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhhH
Q 002273 404 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 465 (944)
Q Consensus 404 ~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~ 465 (944)
+++|.+|+..+.++|.++|++..++|..|.++..+|+++.|+..|+++++++|+|..+...+
T Consensus 270 l~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el 331 (397)
T KOG0543|consen 270 LKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAEL 331 (397)
T ss_pred hhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666665554443
No 235
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.74 E-value=2.5e-08 Score=85.08 Aligned_cols=82 Identities=26% Similarity=0.306 Sum_probs=73.4
Q ss_pred hCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002273 60 SRNKFVDALALYEIVLEKDSG--NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAE 137 (944)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 137 (944)
.+|+|++|+.+|+++++.+|. +...++.+|.|+++.|++++|+..+++ .+.++.+....+.+|.++..+|++++|++
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 368999999999999999995 466788899999999999999999999 88888888999999999999999999999
Q ss_pred HHHHH
Q 002273 138 SYHKA 142 (944)
Q Consensus 138 ~~~~a 142 (944)
.++++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99875
No 236
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.74 E-value=3.1e-08 Score=79.80 Aligned_cols=64 Identities=31% Similarity=0.490 Sum_probs=45.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 002273 396 NLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 459 (944)
Q Consensus 396 ~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~ 459 (944)
.+|..+...|++++|+..|+++++.+|+++++++.+|.++..+|++++|+..|+++++.+|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4667777777777777777777777777777777777777777777777777777777777654
No 237
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.73 E-value=0.00067 Score=72.94 Aligned_cols=406 Identities=13% Similarity=0.066 Sum_probs=226.0
Q ss_pred ChHHHHHHHHHHHhCC--CHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHH-HhCCHHHHHHHHHHHHhcC---CCC--
Q 002273 47 EGKDALSYANILRSRN--KFVDALALYEIVLEKDSGN---VEAHIGKGICLQ-MQNMGRLAFDSFSEAVKLD---PQN-- 115 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g--~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~---p~~-- 115 (944)
-..+++.+|+.+...| +...++++++..+...|.+ +.....+|.+++ ...+.+.|...++++..+. |..
T Consensus 6 va~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fyd 85 (629)
T KOG2300|consen 6 VAEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYD 85 (629)
T ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHh
Confidence 3567889999999999 9999999999999887763 456677777654 6789999999999998653 322
Q ss_pred --HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-CCCC-
Q 002273 116 --ACAHTHCGILYKDEG-RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI-DPHY- 190 (944)
Q Consensus 116 --~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~- 190 (944)
.++...++.+|.... .+..|...+++++++..+.+.- -...++.++....-..++..|++.+.-..+. ++..
T Consensus 86 vKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~w---sckllfQLaql~~idkD~~sA~elLavga~sAd~~~~ 162 (629)
T KOG2300|consen 86 VKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYW---SCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICF 162 (629)
T ss_pred hhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchh---hHHHHHHHHHHHhhhccchhHHHHHhccccccchhhh
Confidence 356788899988877 8899999999999998776632 2446788999999999999999985433222 1111
Q ss_pred --HHHHHHH--HHHHHHcCCHHHHHHHHH---HHHHhCCCCH---H----HHHHHHHH-HHHcCCHHHHHHHHHHHHH--
Q 002273 191 --APAYYNL--GVVYSELMQYDTALGCYE---KAALERPMYA---E----AYCNMGVI-YKNRGDLESAIACYERCLA-- 253 (944)
Q Consensus 191 --~~~~~~l--a~~~~~~g~~~~A~~~~~---~al~~~p~~~---~----~~~~la~~-~~~~g~~~~A~~~~~~al~-- 253 (944)
..+.+.+ +.++...-+..+.....+ +..+....++ + .+..+-.+ |...|+...+...+++.-+
T Consensus 163 ~ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~si 242 (629)
T KOG2300|consen 163 PYLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSI 242 (629)
T ss_pred HHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHH
Confidence 1122222 333333334434444433 3333322221 1 22333333 3446776666665554322
Q ss_pred -h-CCC-----------c-HH--HHHH----HHHHH------------HHhhhhhhhhHHHHH-hhcCCCCCchh-----
Q 002273 254 -V-SPN-----------F-EI--AKNN----MAIAL------------TDLGTKTYGRALLLF-RLNGSNFQSPF----- 295 (944)
Q Consensus 254 -~-~p~-----------~-~~--~~~~----la~~l------------~~~~~~~~~~a~~~~-~~~~~~~~~~~----- 295 (944)
. .+. + +. .|.- .+.++ .+...+...+++... +....+.....
T Consensus 243 qtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~k 322 (629)
T KOG2300|consen 243 QTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFK 322 (629)
T ss_pred hccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHH
Confidence 1 110 0 00 0000 00111 111111111111111 11111111111
Q ss_pred -------HHHhhhcCCHHHHHHHHHHHHHh---CCC-------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-C-
Q 002273 296 -------FELVKLEGDINQGVAYYKKALYY---NWH-------YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH-C- 356 (944)
Q Consensus 296 -------~~l~~~~~~~~~A~~~~~~al~~---~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~- 356 (944)
+.+-.-.|++.+|++....+.+. .|. .+.+.+.+|......+.++.|...|..+.+.... +
T Consensus 323 m~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl 402 (629)
T KOG2300|consen 323 MILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDL 402 (629)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHH
Confidence 11222356666666666555443 232 2345566666666667777777777776665322 2
Q ss_pred -HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-C
Q 002273 357 -AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF----------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT-Y 424 (944)
Q Consensus 357 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----------~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~-~ 424 (944)
+....++|..|...++-+.-.+.++ .+.|.+ ..+++..|...+.++++.||...+.+.++.... +
T Consensus 403 ~a~~nlnlAi~YL~~~~~ed~y~~ld---~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed 479 (629)
T KOG2300|consen 403 QAFCNLNLAISYLRIGDAEDLYKALD---LIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAED 479 (629)
T ss_pred HHHHHHhHHHHHHHhccHHHHHHHHH---hcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhh
Confidence 2334456667776655443333222 233331 235556666666777777777777777665411 0
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002273 425 -----AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 458 (944)
Q Consensus 425 -----~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~ 458 (944)
.-.+..|+.+....|+..++.+..+-++++....
T Consensus 480 ~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi 518 (629)
T KOG2300|consen 480 LNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKI 518 (629)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcC
Confidence 2234456666666777777777666666554333
No 238
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.73 E-value=6.5e-07 Score=85.33 Aligned_cols=127 Identities=16% Similarity=0.064 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC---HHHHHHH
Q 002273 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHC 122 (944)
Q Consensus 49 ~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l 122 (944)
...+..+......++...+...++++++.+|+. ..+.+.+|.+++..|++++|...|++++...|+. ..+.+.+
T Consensus 12 ~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 12 SALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344455555555666666666666666666665 4455566666666666666666666666655433 2345556
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002273 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEA 183 (944)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~a 183 (944)
+.++...|++++|+..++.. ++... .+.++..+|.++...|++++|+..|+++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~----~~~~~----~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQI----PDEAF----KALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhc----cCcch----HHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 66666666666666666441 11000 1223444555555555555555555554
No 239
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.73 E-value=7e-07 Score=100.00 Aligned_cols=297 Identities=14% Similarity=0.117 Sum_probs=163.1
Q ss_pred cCcHHHHHHhhhhhccC-CcEEEEEEeccccCChhhHHHHHHHhhhCCceEeccC--CC--------HHHHHHHhHhCCc
Q 002273 522 THSVSYFIEAPLVYHDY-QNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYG--ID--------EKKVAAMVREDKI 590 (944)
Q Consensus 522 ~h~v~~~~~~~l~~~d~-~~fev~~y~~~~~~d~~t~~~~~~~~~~~~~~~~~~~--~~--------~~~~a~~i~~d~i 590 (944)
+.|--.++.+++..... ..|++.+..++..-+. ...+.....-..+....+.+ -+ -.++++.+++.++
T Consensus 9 tr~~~~~~~p~~~~l~~~~~~~~~~~~tg~h~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~p 87 (365)
T TIGR00236 9 TRPEAIKMAPLIRALKKYPEIDSYVIVTAQHREM-LDQVLDLFHLPPDYDLNIMSPGQTLGEITSNMLEGLEELLLEEKP 87 (365)
T ss_pred cCHHHHHHHHHHHHHhhCCCCCEEEEEeCCCHHH-HHHHHHhcCCCCCeeeecCCCCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 45555566677665544 4688888887765422 22222222111122223322 22 1457888999999
Q ss_pred cEEEecCCCCCCCchhhhc--cCCcceeeecccCCCCCCCC--CccE-------EEecCCCCCcccc-------cccccc
Q 002273 591 DILVELTGHTANNKLGMMA--CQPAPVQVTWIGYPNTTGLP--TIDY-------RITDSLADPPETK-------QKHVEE 652 (944)
Q Consensus 591 dilvdl~g~t~~~~~~~~a--~r~ApvQ~~~~G~p~t~g~~--~~Dy-------~i~d~~~~p~~~~-------~~~~e~ 652 (944)
||++=. |.+...-.+..+ .+-.|| +..-|...|.+.. .-|- .++|.++.|.+.. ..-.|+
T Consensus 88 Div~~~-gd~~~~la~a~aa~~~~ipv-~h~~~g~~s~~~~~~~~~~~~r~~~~~~ad~~~~~s~~~~~~l~~~G~~~~~ 165 (365)
T TIGR00236 88 DIVLVQ-GDTTTTLAGALAAFYLQIPV-GHVEAGLRTGDRYSPMPEEINRQLTGHIADLHFAPTEQAKDNLLRENVKADS 165 (365)
T ss_pred CEEEEe-CCchHHHHHHHHHHHhCCCE-EEEeCCCCcCCCCCCCccHHHHHHHHHHHHhccCCCHHHHHHHHHcCCCccc
Confidence 999644 222111111222 223455 2222222222211 1111 1345555554331 112345
Q ss_pred eEEcCCCccc--cCCCC-C-CCCCCCCCCCCCCCeEEEecCCC---CcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHH
Q 002273 653 LIRLPECFLC--YTPSP-E-AGPVCPTPALTNGFITFGSFNNL---AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDS 725 (944)
Q Consensus 653 ~~~lp~~~~~--~~~~~-~-~~~~~~~~~~~~~~~~f~~~~~~---~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~ 725 (944)
+..+++.... +.+.. . ........+ .++.++++++++. .|..+.+++++.++.+..|+.++++.+.+- ..
T Consensus 166 I~vign~~~d~~~~~~~~~~~~~~~~~~~-~~~~~vl~~~hr~~~~~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~--~~ 242 (365)
T TIGR00236 166 IFVTGNTVIDALLTNVEIAYSSPVLSEFG-EDKRYILLTLHRRENVGEPLENIFKAIREIVEEFEDVQIVYPVHLN--PV 242 (365)
T ss_pred EEEeCChHHHHHHHHHhhccchhHHHhcC-CCCCEEEEecCchhhhhhHHHHHHHHHHHHHHHCCCCEEEEECCCC--hH
Confidence 6666654321 11110 0 011111122 2345566666543 366789999999998888999888765431 23
Q ss_pred HHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecC--CCcccccchhH
Q 002273 726 VRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVHAHNVGVS 803 (944)
Q Consensus 726 ~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~--g~~~~~r~~~~ 803 (944)
.+..+. +..|. .++|.|++..+ ..+++..+..+|+++-+. |+.++||+++|+|||+.. |+..-
T Consensus 243 ~~~~~~---~~~~~-~~~v~~~~~~~-~~~~~~~l~~ad~vv~~S----g~~~~EA~a~g~PvI~~~~~~~~~e------ 307 (365)
T TIGR00236 243 VREPLH---KHLGD-SKRVHLIEPLE-YLDFLNLAANSHLILTDS----GGVQEEAPSLGKPVLVLRDTTERPE------ 307 (365)
T ss_pred HHHHHH---HHhCC-CCCEEEECCCC-hHHHHHHHHhCCEEEECC----hhHHHHHHHcCCCEEECCCCCCChH------
Confidence 444333 23455 47899999876 678999999999997432 344799999999999963 22111
Q ss_pred HHhhcCCcccccCCHHHHHHHHHHHhcCHHHHHHHHH
Q 002273 804 LLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRM 840 (944)
Q Consensus 804 ~l~~~gl~~~v~~~~~~y~~~a~~l~~d~~~~~~~r~ 840 (944)
+...|..-++..|+++..+...++.+|++.+++++.
T Consensus 308 -~~~~g~~~lv~~d~~~i~~ai~~ll~~~~~~~~~~~ 343 (365)
T TIGR00236 308 -TVEAGTNKLVGTDKENITKAAKRLLTDPDEYKKMSN 343 (365)
T ss_pred -HHhcCceEEeCCCHHHHHHHHHHHHhChHHHHHhhh
Confidence 112354445667999999999999999877666654
No 240
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.71 E-value=4.5e-08 Score=78.83 Aligned_cols=65 Identities=29% Similarity=0.366 Sum_probs=47.3
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCH
Q 002273 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA 116 (944)
Q Consensus 52 ~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 116 (944)
+.+|..++..|+|++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 35677777777777777777777777777777777777777777777777777777777777654
No 241
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.71 E-value=3.6e-08 Score=84.07 Aligned_cols=81 Identities=28% Similarity=0.420 Sum_probs=52.8
Q ss_pred CCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002273 370 RDNLDKAVECYQMALSIKPN--FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 447 (944)
Q Consensus 370 ~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~ 447 (944)
+|++++|+..++++++..|. +...++.+|.++++.|++++|+..+++ .+.++.+....+.+|.++..+|++++|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46667777777777776664 344566667777777777777777766 556666666666667777777777777777
Q ss_pred HHHH
Q 002273 448 YEQC 451 (944)
Q Consensus 448 ~~~a 451 (944)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 6654
No 242
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.70 E-value=1.1e-08 Score=103.72 Aligned_cols=240 Identities=15% Similarity=0.049 Sum_probs=172.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 002273 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239 (944)
Q Consensus 160 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 239 (944)
+...|+-|+++|.|++|+.+|.+++..+|.++..+.+.+..|++++.|..|...++.++.++.....+|...+..-..+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 45678899999999999999999999999999999999999999999999999999999999989999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhC
Q 002273 240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYN 319 (944)
Q Consensus 240 ~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~ 319 (944)
+..+|.+-++.++.+.|++.+....++.+-.- .++ +-+.+..
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl----------------------------------~E~----~I~~KsT 221 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIELKKSLARINSL----------------------------------RER----KIATKST 221 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHHHHHHHHHhcch----------------------------------Hhh----hHHhhcC
Confidence 99999999999999999876554433322110 000 0000111
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 002273 320 WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 399 (944)
Q Consensus 320 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 399 (944)
|. +-.|.+-..+++.+. .-|..+...|.++.++.++-.-+....++...-.+ +.
T Consensus 222 ~G-----------------~~~A~Q~~~Q~l~~K--------~~G~~Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~-~~ 275 (536)
T KOG4648|consen 222 PG-----------------FTPARQGMIQILPIK--------KPGYKFSKKAMRSVPVVDVVSPRATIDDSNQLRIS-DE 275 (536)
T ss_pred CC-----------------CCccccchhhhcccc--------CcchhhhhhhccccceeEeeccccccCccccCccc-HH
Confidence 11 112222222222111 12445556677777777777666555544444444 66
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhh
Q 002273 400 VYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 463 (944)
Q Consensus 400 ~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~ 463 (944)
.|.+..++++|+...-+++..+|.........+.+---.|...++...++.++.+.|.+..+..
T Consensus 276 ~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~T~~~~~~E~K~~~~T~~~~~P~~~~~~~ 339 (536)
T KOG4648|consen 276 DIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAETIAKTSKEVKPTKQTAVKVAPAVETPKE 339 (536)
T ss_pred HHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhHHHHhhhhhcCcchhheeeeccccccchh
Confidence 6777888888888888888887776555555555556667778888999999999998776554
No 243
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=98.70 E-value=5.4e-07 Score=102.34 Aligned_cols=173 Identities=17% Similarity=0.127 Sum_probs=120.3
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCC----ceEEEecCCC-CCHHHHHHHHHHHHHc--------CC-CCCcE
Q 002273 681 GFITFGSFNNL--AKITPKVLQVWARILCAVPN----SRLVVKCKPF-CCDSVRHRFLSTLEQL--------GL-ESLRV 744 (944)
Q Consensus 681 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~----~~l~~~~~~~-~~~~~~~~~~~~~~~~--------gi-~~~rv 744 (944)
+..++++..|+ .|..+..++++.++++..|+ .+|++++.+. .+......+++.+++. |- +-.-|
T Consensus 258 ~~~vIl~VgRLd~~KGi~~ll~A~~~ll~~~p~~~~~v~Lv~v~~p~rg~~~~~~~l~~~i~~lv~~in~~~~~~~~~pv 337 (456)
T TIGR02400 258 GRKLIIGVDRLDYSKGLPERLLAFERFLEEHPEWRGKVVLVQIAVPSRGDVPEYQQLRRQVEELVGRINGRFGTLDWTPI 337 (456)
T ss_pred CCeEEEEccccccccCHHHHHHHHHHHHHhCccccCceEEEEEecCCccCchHHHHHHHHHHHHHHHHHhccCCCCCccE
Confidence 44567787866 89999999999999999997 4577665443 2223344555555443 21 11114
Q ss_pred EEccCccCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCc----EEecCCCcccccchhHHHhhcCCcccc--cCC
Q 002273 745 DLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVP----CVTMAGSVHAHNVGVSLLTKVGLKHLI--AKN 817 (944)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvP----vvt~~g~~~~~r~~~~~l~~~gl~~~v--~~~ 817 (944)
++++...+.++..+.|+.+||+|-|+-+ +-+.|++|||+||+| ||. |+++++. ..++ ..++ ..|
T Consensus 338 ~~l~~~~~~~el~aly~aaDv~vv~S~~EG~~Lv~lEamA~g~P~~g~vVl-------S~~~G~~-~~l~-~gllVnP~d 408 (456)
T TIGR02400 338 RYLNRSYDREELMALYRAADVGLVTPLRDGMNLVAKEYVAAQDPKDGVLIL-------SEFAGAA-QELN-GALLVNPYD 408 (456)
T ss_pred EEEcCCCCHHHHHHHHHhCcEEEECccccccCccHHHHHHhcCCCCceEEE-------eCCCCCh-HHhC-CcEEECCCC
Confidence 5544333478999999999999999977 669999999999999 776 5554211 1122 3333 468
Q ss_pred HHHHHHHHHHHhc-CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 002273 818 EDEYVQLALQLAS-DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTY 865 (944)
Q Consensus 818 ~~~y~~~a~~l~~-d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~ 865 (944)
.++..+...++.+ +++++++..+++++++.+ ||...+++.+...+
T Consensus 409 ~~~lA~aI~~aL~~~~~er~~r~~~~~~~v~~---~~~~~W~~~~l~~l 454 (456)
T TIGR02400 409 IDGMADAIARALTMPLEEREERHRAMMDKLRK---NDVQRWREDFLSDL 454 (456)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh---CCHHHHHHHHHHHh
Confidence 8888888877776 667888888888888642 79999998876544
No 244
>PRK11906 transcriptional regulator; Provisional
Probab=98.70 E-value=9.5e-07 Score=95.78 Aligned_cols=160 Identities=9% Similarity=0.008 Sum_probs=101.7
Q ss_pred HHHHHHHHHHhCC---CHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHh---------CCHHHHHHHHHHHHhcCCC
Q 002273 50 DALSYANILRSRN---KFVDALALYEIVL---EKDSGNVEAHIGKGICLQMQ---------NMGRLAFDSFSEAVKLDPQ 114 (944)
Q Consensus 50 ~~~~~A~~~~~~g---~~~~A~~~~~~al---~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~ 114 (944)
.++..|...+..+ ..+.|+.+|.+++ +.+|..+.++-.++.|++.. ....+|....+++++++|.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 4466666665554 3456777788888 77777788888888777644 2344566777777777777
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHH
Q 002273 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAY 194 (944)
Q Consensus 115 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 194 (944)
++.++..+|.++...++++.|...|++++.++|+...+ ++..|......|+.++|++.++++++++|....+-
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~-------~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASL-------YYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHH-------HHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 77777777777777777777777777777777766443 45555555566667777777777666666544333
Q ss_pred HHHHHH-HHHcCCHHHHHHHHHH
Q 002273 195 YNLGVV-YSELMQYDTALGCYEK 216 (944)
Q Consensus 195 ~~la~~-~~~~g~~~~A~~~~~~ 216 (944)
...-.+ .+-....++|+..|-+
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 410 VIKECVDMYVPNPLKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHHcCCchhhhHHHHhh
Confidence 222222 2333445555555544
No 245
>PRK11906 transcriptional regulator; Provisional
Probab=98.70 E-value=5.8e-07 Score=97.40 Aligned_cols=147 Identities=11% Similarity=0.067 Sum_probs=94.2
Q ss_pred CHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHc---------CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC
Q 002273 304 DINQGVAYYKKAL---YYNWHYADAMYNLGVAYGEM---------LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD 371 (944)
Q Consensus 304 ~~~~A~~~~~~al---~~~p~~~~~~~~la~~~~~~---------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 371 (944)
..+.|+.+|.+++ ..+|..+.+|..++.++... ....+|.+..+++++++|.++.++..+|.++...+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 3477888888888 77888888888888877654 12345666666666666666666666666666666
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHH
Q 002273 372 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL-YRDAGSISLAIDAYEQ 450 (944)
Q Consensus 372 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~-~~~~g~~~eA~~~~~~ 450 (944)
+++.|+..|++|+.++|+.+.+++..|.+....|+.++|.+.++++++++|....+-...-.+ .+-....++|+..|-+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLYYK 432 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHHhh
Confidence 666666666666666666666666666666666666666666666666666554333222222 2223344555555543
No 246
>PRK15331 chaperone protein SicA; Provisional
Probab=98.69 E-value=1.8e-07 Score=87.20 Aligned_cols=105 Identities=10% Similarity=0.030 Sum_probs=73.0
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002273 353 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLG 432 (944)
Q Consensus 353 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la 432 (944)
.++..+..+..|.-++..|++++|...|+-....+|.+++.+..||.++..+++|++|+..|..+..++++++...+..|
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ag 112 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTG 112 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHH
Confidence 33445566666666677777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002273 433 VLYRDAGSISLAIDAYEQCLKIDPDS 458 (944)
Q Consensus 433 ~~~~~~g~~~eA~~~~~~al~l~P~~ 458 (944)
.||..+|+.++|+.+|+.+++ .|.+
T Consensus 113 qC~l~l~~~~~A~~~f~~a~~-~~~~ 137 (165)
T PRK15331 113 QCQLLMRKAAKARQCFELVNE-RTED 137 (165)
T ss_pred HHHHHhCCHHHHHHHHHHHHh-Ccch
Confidence 777777777777777777766 3443
No 247
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.69 E-value=5.7e-05 Score=78.75 Aligned_cols=96 Identities=17% Similarity=-0.005 Sum_probs=71.4
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 002273 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGN-VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (944)
Q Consensus 48 ~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (944)
+-..+..|+...-.|+|+.|.+-|+.++. +|+. .-.+..+-......|..+.|+.+.+.+...-|.-+.+....-...
T Consensus 120 pLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r 198 (531)
T COG3898 120 PLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEAR 198 (531)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHH
Confidence 34455667788888999999999988875 3331 112222333345678999999999999999999888888888888
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 002273 127 KDEGRLVEAAESYHKALS 144 (944)
Q Consensus 127 ~~~g~~~~A~~~~~~al~ 144 (944)
+..|+++.|++..+....
T Consensus 199 ~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 199 CAAGDWDGALKLVDAQRA 216 (531)
T ss_pred HhcCChHHHHHHHHHHHH
Confidence 889999999998876654
No 248
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.69 E-value=0.00074 Score=78.06 Aligned_cols=431 Identities=12% Similarity=0.017 Sum_probs=236.1
Q ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 002273 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (944)
Q Consensus 44 ~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (944)
.|...-+....|..+++.|++++|..+++..-...+++...+-.+-.||..++++++|..+|++++..+|+ .+.++.+-
T Consensus 39 ~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lF 117 (932)
T KOG2053|consen 39 HPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLF 117 (932)
T ss_pred CCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHH
Confidence 34566677888999999999999998888877777788889999999999999999999999999999999 78888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHH---------------------------------------HHH
Q 002273 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLT---------------------------------------DLG 164 (944)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---------------------------------------~lg 164 (944)
.+|.+.+.|.+-.+.--+..+..|+.+........+.. ..-
T Consensus 118 mayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl 197 (932)
T KOG2053|consen 118 MAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYL 197 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHH
Confidence 88888888776555555555555554332211111100 011
Q ss_pred HHHHHcCChHHHHHHHHH-HHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHH-------
Q 002273 165 TSLKLAGNTQDGIQKYYE-ALKI-DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCN-MGVI------- 234 (944)
Q Consensus 165 ~~~~~~g~~~~A~~~~~~-al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~-la~~------- 234 (944)
.++..+|++++|...+.. ..+. .+.+..........+...+++.+-.+...+++...+++...+.. .-.+
T Consensus 198 ~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Ddy~~~~~sv~klLe~~~~~ 277 (932)
T KOG2053|consen 198 LILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDDYKIYTDSVFKLLELLNKE 277 (932)
T ss_pred HHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcchHHHHHHHHHHHHhcccc
Confidence 245567888888888833 2222 34444455566778888999999999999999988887222211 0111
Q ss_pred -----HHHcCCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchh--HHHhhhcCCHH
Q 002273 235 -----YKNRGDLESAIACYERCLAVSPNFE-IAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPF--FELVKLEGDIN 306 (944)
Q Consensus 235 -----~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~--~~l~~~~~~~~ 306 (944)
+...+..+..++..++.+......+ -++..+..-+...|..+ +.+..+...-.....-. ...+...=...
T Consensus 278 ~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd~e--e~~~~y~~kfg~kpcc~~Dl~~yl~~l~~~ 355 (932)
T KOG2053|consen 278 PAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGDSE--EMLSYYFKKFGDKPCCAIDLNHYLGHLNID 355 (932)
T ss_pred cchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCChH--HHHHHHHHHhCCCcHhHhhHHHhhccCCHH
Confidence 1111222222232233222211111 11111111111111111 00000000000000000 00000000111
Q ss_pred HHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCh-----HHHHHHH-------HHHHhh----CCC---CHHHHH
Q 002273 307 QGVAYYKKALYYNWHYA------DAMYNLGVAYGEMLKF-----DMAIVFY-------ELAFHF----NPH---CAEACN 361 (944)
Q Consensus 307 ~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~-----~~A~~~~-------~~al~~----~p~---~~~~~~ 361 (944)
+-.....+.+...+... ..+...-.+....|.| +.-..++ ++-++. .|. ..+.+.
T Consensus 356 q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~l 435 (932)
T KOG2053|consen 356 QLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELL 435 (932)
T ss_pred HHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHH
Confidence 11222222222222211 0111111222223321 1112222 222121 122 123333
Q ss_pred HHH-----HHHHHCCC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002273 362 NLG-----VIYKDRDN---LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 433 (944)
Q Consensus 362 ~la-----~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~ 433 (944)
.++ ..+.+.++ .-+|+-.++..+..+|.+......+-.+|...|-+..|.+.|+..--.+-.....-+.+-.
T Consensus 436 lLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~~ 515 (932)
T KOG2053|consen 436 LLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIFR 515 (932)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHHH
Confidence 333 44555554 4588999999999999999999999999999999999999987652222221222233445
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChhhhhhHHHHhhhccCCChHH
Q 002273 434 LYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDK 479 (944)
Q Consensus 434 ~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~ 479 (944)
.+...|++.-+...+...+...-++..-.. .+.++.| ..|...+
T Consensus 516 ~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~-eyI~~AY-r~g~ySk 559 (932)
T KOG2053|consen 516 RAETSGRSSFASNTFNEHLKFYDSSLKETP-EYIALAY-RRGAYSK 559 (932)
T ss_pred HHHhcccchhHHHHHHHHHHHHhhhhhhhH-HHHHHHH-HcCchhh
Confidence 566778998898888888888766543322 2344444 3344433
No 249
>PRK15331 chaperone protein SicA; Provisional
Probab=98.69 E-value=3.1e-07 Score=85.71 Aligned_cols=107 Identities=11% Similarity=0.021 Sum_probs=99.7
Q ss_pred CCCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 002273 42 TLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTH 121 (944)
Q Consensus 42 ~~~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 121 (944)
...+..-+..+..|..++.+|++++|..+|+-+...+|.+.+.++.+|.|+..+++|++|+..|..+..++++++...+.
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 34445678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 002273 122 CGILYKDEGRLVEAAESYHKALSADPSY 149 (944)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~p~~ 149 (944)
.|.|++.+|+.++|+..|+.++. .|.+
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~-~~~~ 137 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNE-RTED 137 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh-Ccch
Confidence 99999999999999999999998 3443
No 250
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=1.1e-05 Score=80.15 Aligned_cols=254 Identities=15% Similarity=0.096 Sum_probs=168.0
Q ss_pred HHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002273 167 LKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIA 246 (944)
Q Consensus 167 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 246 (944)
++-.|+|.+++..-++.-... ........+.+.|..+|++...+.-....- .....+...++.....-++.++-+.
T Consensus 18 ~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~~~~ 93 (299)
T KOG3081|consen 18 YFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKSILA 93 (299)
T ss_pred HHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHHHHH
Confidence 344577777777666554433 556667777777888887765544333221 1112344444554444445444444
Q ss_pred HHHHHHHhCCCcHH-HHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHH
Q 002273 247 CYERCLAVSPNFEI-AKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADA 325 (944)
Q Consensus 247 ~~~~al~~~p~~~~-~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~ 325 (944)
.+.+.+........ .+..++ +.++...+++++|++..... .+.++
T Consensus 94 ~l~E~~a~~~~~sn~i~~l~a-----------------------------a~i~~~~~~~deAl~~~~~~-----~~lE~ 139 (299)
T KOG3081|consen 94 SLYELVADSTDGSNLIDLLLA-----------------------------AIIYMHDGDFDEALKALHLG-----ENLEA 139 (299)
T ss_pred HHHHHHHhhccchhHHHHHHh-----------------------------hHHhhcCCChHHHHHHHhcc-----chHHH
Confidence 43333322211111 111111 12355677888888877663 33556
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 002273 326 MYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVY 401 (944)
Q Consensus 326 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 401 (944)
...-..++.++.+++-|.+.++++.+++.+ ..+..||..+.. .+++.+|.-+|++.-+..|..+..+...+.+.
T Consensus 140 ~Al~VqI~lk~~r~d~A~~~lk~mq~ided--~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~ 217 (299)
T KOG3081|consen 140 AALNVQILLKMHRFDLAEKELKKMQQIDED--ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCH 217 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccchH--HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHH
Confidence 666677888889999999999998888755 344445555443 34688899999998887888889999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHhhCCCChh
Q 002273 402 TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAID-AYEQCLKIDPDSRN 460 (944)
Q Consensus 402 ~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~-~~~~al~l~P~~~~ 460 (944)
..+|++++|...++.++..++++++++.++..+-...|.-.++.+ ...+....+|+++-
T Consensus 218 l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 218 LQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred HHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 999999999999999999999999999999998888888766554 45666666777653
No 251
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=98.68 E-value=3.2e-07 Score=102.52 Aligned_cols=261 Identities=17% Similarity=0.140 Sum_probs=146.6
Q ss_pred HHHHHHhHhCCccEEEecCCCCCCCchhhhccC--Ccceeeecc-cCCCC---CCCCCccEEEecCCCCCcccccccccc
Q 002273 579 KKVAAMVREDKIDILVELTGHTANNKLGMMACQ--PAPVQVTWI-GYPNT---TGLPTIDYRITDSLADPPETKQKHVEE 652 (944)
Q Consensus 579 ~~~a~~i~~d~idilvdl~g~t~~~~~~~~a~r--~ApvQ~~~~-G~p~t---~g~~~~Dy~i~d~~~~p~~~~~~~~e~ 652 (944)
..+.+.|++.++||++--+.++ +-...++.| ..|+=+.-. .+|+- ......|.+++.. +......-..+
T Consensus 81 ~~~~~~ik~~~pDvv~~~~~~~--~~~~~~~~~~~~~p~v~~~~~~~~~~~~r~~~~~~d~ii~~~---~~~~~~~~~~~ 155 (357)
T PRK00726 81 LQARKILKRFKPDVVVGFGGYV--SGPGGLAARLLGIPLVIHEQNAVPGLANKLLARFAKKVATAF---PGAFPEFFKPK 155 (357)
T ss_pred HHHHHHHHhcCCCEEEECCCcc--hhHHHHHHHHcCCCEEEEcCCCCccHHHHHHHHHhchheECc---hhhhhccCCCC
Confidence 3567788999999998765444 223333333 234422211 11110 0112334444321 10000122345
Q ss_pred eEEcCCCccccCCCCCCCCCCCCCCCCCCCeEEEecCCC--CcCCHHHH-HHHHHHHhHcCCceEEEecCCCCCHHHHHH
Q 002273 653 LIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNL--AKITPKVL-QVWARILCAVPNSRLVVKCKPFCCDSVRHR 729 (944)
Q Consensus 653 ~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~-~~~~~il~~~p~~~l~~~~~~~~~~~~~~~ 729 (944)
+..+|+..-. ... ..........++.+..+++.+.+. .|.....+ +++.++... | -++++.|.+. .+.
T Consensus 156 i~vi~n~v~~-~~~-~~~~~~~~~~~~~~~~~i~~~gg~~~~~~~~~~l~~a~~~~~~~-~-~~~~~~G~g~-----~~~ 226 (357)
T PRK00726 156 AVVTGNPVRE-EIL-ALAAPPARLAGREGKPTLLVVGGSQGARVLNEAVPEALALLPEA-L-QVIHQTGKGD-----LEE 226 (357)
T ss_pred EEEECCCCCh-Hhh-cccchhhhccCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhhhC-c-EEEEEcCCCc-----HHH
Confidence 6666653211 100 000111112333444455555543 34333333 666666443 4 4555666542 245
Q ss_pred HHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCcc---cccchhHHHh
Q 002273 730 FLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVH---AHNVGVSLLT 806 (944)
Q Consensus 730 ~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~---~~r~~~~~l~ 806 (944)
+.+..+ +|+. |.|.+.+ .++...+..+|+++-+ +|+.|++|||.+|+|||+.+.... .....+.++.
T Consensus 227 ~~~~~~-~~~~---v~~~g~~---~~~~~~~~~~d~~i~~---~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~ 296 (357)
T PRK00726 227 VRAAYA-AGIN---AEVVPFI---DDMAAAYAAADLVICR---AGASTVAELAAAGLPAILVPLPHAADDHQTANARALV 296 (357)
T ss_pred HHHHhh-cCCc---EEEeehH---hhHHHHHHhCCEEEEC---CCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHH
Confidence 555555 7773 8998885 4677788889999843 356889999999999999764211 1112245566
Q ss_pred hcCCccccc-CC--HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 002273 807 KVGLKHLIA-KN--EDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 866 (944)
Q Consensus 807 ~~gl~~~v~-~~--~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 866 (944)
..|..-++. .| ++++.+....+.+|++.++++++..++.. .-++..+.++.+++..+
T Consensus 297 ~~~~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 356 (357)
T PRK00726 297 DAGAALLIPQSDLTPEKLAEKLLELLSDPERLEAMAEAARALG---KPDAAERLADLIEELAR 356 (357)
T ss_pred HCCCEEEEEcccCCHHHHHHHHHHHHcCHHHHHHHHHHHHhcC---CcCHHHHHHHHHHHHhh
Confidence 667655553 34 89999999999999999999999887663 33677788777776544
No 252
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.68 E-value=6.6e-07 Score=102.58 Aligned_cols=144 Identities=16% Similarity=0.071 Sum_probs=107.5
Q ss_pred HHhCCCCHHHH--HHHHHHHHHhCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHH
Q 002273 75 LEKDSGNVEAH--IGKGICLQMQNM---GRLAFDSFSEAVKLDPQNACAHTHCGILYKDE--------GRLVEAAESYHK 141 (944)
Q Consensus 75 l~~~p~~~~~~--~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------g~~~~A~~~~~~ 141 (944)
....|.+..+| +..|..+...++ ..+|+.+|+++++++|+++.++..++.++... .+..++....++
T Consensus 330 ~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 330 QQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred hccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 34556665554 556666655544 67888899999999999888888877776543 234556666666
Q ss_pred HHHc--CCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002273 142 ALSA--DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAAL 219 (944)
Q Consensus 142 al~~--~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 219 (944)
++.+ ++..+. ++..+|......|++++|...+++++.++| +..+|..+|.++...|++++|++.|++++.
T Consensus 410 a~al~~~~~~~~-------~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 410 IVALPELNVLPR-------IYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred hhhcccCcCChH-------HHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6664 444433 355566667778999999999999999998 478999999999999999999999999999
Q ss_pred hCCCCHH
Q 002273 220 ERPMYAE 226 (944)
Q Consensus 220 ~~p~~~~ 226 (944)
++|.++.
T Consensus 482 L~P~~pt 488 (517)
T PRK10153 482 LRPGENT 488 (517)
T ss_pred cCCCCch
Confidence 9998765
No 253
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.67 E-value=5e-07 Score=94.11 Aligned_cols=106 Identities=25% Similarity=0.343 Sum_probs=81.1
Q ss_pred HHHHHHHHHHH-HHCCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHH
Q 002273 357 AEACNNLGVIY-KDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---AEAYN 429 (944)
Q Consensus 357 ~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~---~~a~~ 429 (944)
....+..+..+ ...|++++|+..|++.++..|++ +.+++.+|.+|+..|++++|+..|+++++..|++ +++++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34555555554 45678888888888888888876 4688888888888888888888888888777664 67788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhh
Q 002273 430 NLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 462 (944)
Q Consensus 430 ~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~ 462 (944)
.+|.++..+|++++|+..|+++++..|+...+.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~ 254 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAK 254 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHH
Confidence 888888888888888888888888888776543
No 254
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=98.66 E-value=4.1e-07 Score=101.37 Aligned_cols=155 Identities=22% Similarity=0.310 Sum_probs=100.5
Q ss_pred CCCCCCCeEEEecCCC--CcCCHHH-HHHHHHHHhHcCCceEE-EecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCcc
Q 002273 676 PALTNGFITFGSFNNL--AKITPKV-LQVWARILCAVPNSRLV-VKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLIL 751 (944)
Q Consensus 676 ~~~~~~~~~f~~~~~~--~K~~~~~-~~~~~~il~~~p~~~l~-~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~ 751 (944)
.+++++..++.++.+. .|...++ +++...+. . ++..++ +.|.+ ..+.+.+.++++ .++|.|.|.+
T Consensus 175 ~~~~~~~~~i~~~~g~~~~~~~~~~l~~a~~~l~-~-~~~~~~~i~G~g-----~~~~l~~~~~~~---~~~v~~~g~~- 243 (350)
T cd03785 175 LGLRPGKPTLLVFGGSQGARAINEAVPEALAELL-R-KRLQVIHQTGKG-----DLEEVKKAYEEL---GVNYEVFPFI- 243 (350)
T ss_pred cCCCCCCeEEEEECCcHhHHHHHHHHHHHHHHhh-c-cCeEEEEEcCCc-----cHHHHHHHHhcc---CCCeEEeehh-
Confidence 3455555455555433 2322233 24444433 2 455544 44443 335566666665 3789999985
Q ss_pred CcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCcc---cccchhHHHhhcCCcccccC---CHHHHHHHH
Q 002273 752 LNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVH---AHNVGVSLLTKVGLKHLIAK---NEDEYVQLA 825 (944)
Q Consensus 752 ~~~~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~---~~r~~~~~l~~~gl~~~v~~---~~~~y~~~a 825 (944)
.+....|..+|+++-+ +|++|++|||.+|+|||+.+-... .....+..+...|..-++.. |.+++.+..
T Consensus 244 --~~~~~~l~~ad~~v~~---sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~g~~v~~~~~~~~~l~~~i 318 (350)
T cd03785 244 --DDMAAAYAAADLVISR---AGASTVAELAALGLPAILIPLPYAADDHQTANARALVKAGAAVLIPQEELTPERLAAAL 318 (350)
T ss_pred --hhHHHHHHhcCEEEEC---CCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHhCCCEEEEecCCCCHHHHHHHH
Confidence 5777888999999943 367899999999999998642211 11112345655677666653 799999999
Q ss_pred HHHhcCHHHHHHHHHHHHHHh
Q 002273 826 LQLASDVTALANLRMSLRDLM 846 (944)
Q Consensus 826 ~~l~~d~~~~~~~r~~~~~~~ 846 (944)
..|.+|++.++.++...++..
T Consensus 319 ~~ll~~~~~~~~~~~~~~~~~ 339 (350)
T cd03785 319 LELLSDPERLKAMAEAARSLA 339 (350)
T ss_pred HHHhcCHHHHHHHHHHHHhcC
Confidence 999999999999998887653
No 255
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=98.66 E-value=4.3e-07 Score=104.07 Aligned_cols=171 Identities=16% Similarity=0.080 Sum_probs=117.7
Q ss_pred CCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCC----ceEEEecCCC-CCH----HHHHHHHHHHHHcCCC-----CCc
Q 002273 680 NGFITFGSFNNL--AKITPKVLQVWARILCAVPN----SRLVVKCKPF-CCD----SVRHRFLSTLEQLGLE-----SLR 743 (944)
Q Consensus 680 ~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~----~~l~~~~~~~-~~~----~~~~~~~~~~~~~gi~-----~~r 743 (944)
.+..++++..|+ .|..+..++++.++++..|+ .+|++++.+. .+. ..++.+.+...+.+.. -..
T Consensus 262 ~~~~~il~vgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~vg~~~~g~~~~~~~l~~~l~~~v~~in~~~g~~~~~~ 341 (460)
T cd03788 262 GGRKLIVGVDRLDYSKGIPERLLAFERLLERYPEWRGKVVLVQIAVPSRTDVPEYQELRREVEELVGRINGKFGTLDWTP 341 (460)
T ss_pred CCCEEEEEecCccccCCHHHHHHHHHHHHHhChhhcCCEEEEEEccCCCcCcHHHHHHHHHHHHHHHHHHhccCCCCcee
Confidence 344567777765 89999999999999999997 4677776442 121 2333343333332221 134
Q ss_pred EEEc-cCccCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCc----EEecCCCcccccchhHHHhhcCCcccc--c
Q 002273 744 VDLL-PLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVP----CVTMAGSVHAHNVGVSLLTKVGLKHLI--A 815 (944)
Q Consensus 744 v~~~-~~~~~~~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvP----vvt~~g~~~~~r~~~~~l~~~gl~~~v--~ 815 (944)
|+|. +.++ ..+..+.|+.+||++-|+-. +-|.|.+|||+||+| ||+ |+.+++.-. |-..++ .
T Consensus 342 v~~~~g~v~-~~el~~~y~~aDv~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~-------S~~~G~~~~--~~~g~lv~p 411 (460)
T cd03788 342 VRYLYRSLP-REELAALYRAADVALVTPLRDGMNLVAKEYVACQDDDPGVLIL-------SEFAGAAEE--LSGALLVNP 411 (460)
T ss_pred EEEEeCCCC-HHHHHHHHHhccEEEeCccccccCcccceeEEEecCCCceEEE-------eccccchhh--cCCCEEECC
Confidence 6555 4444 78999999999999998876 669999999999999 665 544322111 333444 3
Q ss_pred CCHHHHHHHHHHHhcCH-HHHHHHHHHHHHHhhcCCCCChHHHHHHHHH
Q 002273 816 KNEDEYVQLALQLASDV-TALANLRMSLRDLMSKSPVCDGQNFALGLES 863 (944)
Q Consensus 816 ~~~~~y~~~a~~l~~d~-~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~ 863 (944)
.|.+++.+...++.+++ ++++.+.++.++.+. -||...++..+..
T Consensus 412 ~d~~~la~ai~~~l~~~~~e~~~~~~~~~~~v~---~~~~~~w~~~~l~ 457 (460)
T cd03788 412 YDIDEVADAIHRALTMPLEERRERHRKLREYVR---THDVQAWANSFLD 457 (460)
T ss_pred CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCHHHHHHHHHH
Confidence 58999999998888855 677777777777753 3899998887654
No 256
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.65 E-value=1.5e-06 Score=87.82 Aligned_cols=106 Identities=19% Similarity=0.130 Sum_probs=98.5
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC---HHHHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHT 120 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~ 120 (944)
++...+..|..++..|+|.+|...|...++..|++ +.+++.||.+++.+|+|++|...|..+.+..|++ +++++
T Consensus 140 ~~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdall 219 (262)
T COG1729 140 PATKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALL 219 (262)
T ss_pred chhHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHH
Confidence 44569999999999999999999999999999985 7899999999999999999999999999987654 68899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCChhH
Q 002273 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPA 152 (944)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 152 (944)
.+|.+...+|+.++|...|+++++.+|+...+
T Consensus 220 Klg~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 220 KLGVSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 99999999999999999999999999998765
No 257
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=5.7e-07 Score=95.00 Aligned_cols=138 Identities=20% Similarity=0.218 Sum_probs=105.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--------hhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 002273 119 HTHCGILYKDEGRLVEAAESYHKALSADPSY--------KPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY 190 (944)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--------~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 190 (944)
....|..|++.|+|..|...|++++..-... ......+-.++.+++.++.+++++.+|+...+++|..+|++
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N 290 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNN 290 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 4456788888899999999988887753311 11122233467788888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhCC
Q 002273 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA-IACYERCLAVSP 256 (944)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~p 256 (944)
..+++..|.++..+|+|+.|+..|++++++.|.|..+...+..+..+..++.+. .+.|.+++...+
T Consensus 291 ~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 291 VKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 888888888888888888888888888888888888888888777766655544 667777766543
No 258
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.62 E-value=1e-05 Score=80.97 Aligned_cols=190 Identities=16% Similarity=0.145 Sum_probs=138.7
Q ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCH---HH
Q 002273 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA---CA 118 (944)
Q Consensus 45 ~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~ 118 (944)
...+..++..|...++.|+|++|+..|+.+....|.. ..+.+.++.++++.+++++|+..+++.+++.|.++ .+
T Consensus 31 ~~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~ 110 (254)
T COG4105 31 NLPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYA 110 (254)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHH
Confidence 4478999999999999999999999999999988864 67899999999999999999999999999988775 46
Q ss_pred HHHHHHHHHHc--------CCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 002273 119 HTHCGILYKDE--------GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY 190 (944)
Q Consensus 119 ~~~la~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 190 (944)
++..|.+++.. .-..+|+..|+..+...|+..-+.... .-+..+...+
T Consensus 111 ~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~------------------~~i~~~~d~L------ 166 (254)
T COG4105 111 YYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAK------------------ARIVKLNDAL------ 166 (254)
T ss_pred HHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHH------------------HHHHHHHHHH------
Confidence 77788877653 224567888899999999875442111 1111111111
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Q 002273 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMY---AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF 258 (944)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 258 (944)
+.--..+|..|.+.|.+..|+.-++.+++..|+. .+++..+..+|..+|-.++|...-+-.-...|++
T Consensus 167 A~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 167 AGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 1223456777777888888888888777765543 4567777777788887777766544443344444
No 259
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.61 E-value=1.1e-05 Score=86.08 Aligned_cols=157 Identities=12% Similarity=0.039 Sum_probs=123.5
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH-hcCCC--------CHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAV-KLDPQ--------NAC 117 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~p~--------~~~ 117 (944)
..+........+++..+...+....+.+.....+.+.+++..+..++..|++.+|.+.+...- ...|. .-.
T Consensus 205 k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~ci 284 (696)
T KOG2471|consen 205 KLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCI 284 (696)
T ss_pred chhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhhe
Confidence 344555566677888888888888888888888899999999999999999999999876542 22222 123
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc---------CCC--ChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 002273 118 AHTHCGILYKDEGRLVEAAESYHKALSA---------DPS--YKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI 186 (944)
Q Consensus 118 ~~~~la~~~~~~g~~~~A~~~~~~al~~---------~p~--~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (944)
.+.++|.++++.|.|.-+..+|.++++. .|. ..-....--.++++.|..+...|+...|.++|.++...
T Consensus 285 f~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~v 364 (696)
T KOG2471|consen 285 FNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV 364 (696)
T ss_pred eecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH
Confidence 4688999999999999999999999961 111 11111122346889999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHH
Q 002273 187 DPHYAPAYYNLGVVYSE 203 (944)
Q Consensus 187 ~p~~~~~~~~la~~~~~ 203 (944)
.-.++..|..++.++..
T Consensus 365 fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 365 FHRNPRLWLRLAECCIM 381 (696)
T ss_pred HhcCcHHHHHHHHHHHH
Confidence 99999999999998875
No 260
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.60 E-value=9.3e-07 Score=99.09 Aligned_cols=294 Identities=14% Similarity=0.123 Sum_probs=160.3
Q ss_pred HHHhhhhhccC-CcEEEEEEeccccCChhhH-HHHHH-HhhhCCceEeccCCC----------HHHHHHHhHhCCccEEE
Q 002273 528 FIEAPLVYHDY-QNYKVVVYSAVVKADAKTI-RFREK-VMKKGGIWRDIYGID----------EKKVAAMVREDKIDILV 594 (944)
Q Consensus 528 ~~~~~l~~~d~-~~fev~~y~~~~~~d~~t~-~~~~~-~~~~~~~~~~~~~~~----------~~~~a~~i~~d~idilv 594 (944)
.+.+++..... +.+++.++.++..-|..-. .+... .....+++..+.+-+ -.++.+.|++.++||++
T Consensus 14 ~~~pl~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~pDvV~ 93 (363)
T cd03786 14 KLAPLIRALKKDPGFELVLVVTGQHYDMEMGVTFFEILFIIKPDYDLLLGSDSQSLGAQTAGLLIGLEAVLLEEKPDLVL 93 (363)
T ss_pred HHHHHHHHHhcCCCCCEEEEEeCCCCChhhhHHHHHhhCCCCCCEEEecCCCCCCHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence 44555544433 4788988888765543321 11111 111123344444431 24567788899999987
Q ss_pred ecCCCCCCCchhhhccCCcceeeecc--cCCCCCCCCCccE-------EEecCCCCCccccccc-------ccceEEcCC
Q 002273 595 ELTGHTANNKLGMMACQPAPVQVTWI--GYPNTTGLPTIDY-------RITDSLADPPETKQKH-------VEELIRLPE 658 (944)
Q Consensus 595 dl~g~t~~~~~~~~a~r~ApvQ~~~~--G~p~t~g~~~~Dy-------~i~d~~~~p~~~~~~~-------~e~~~~lp~ 658 (944)
=. |++...-...++.|..-+.+... |. .|.-.+.++. .++|.++.|.+....+ .+++..+++
T Consensus 94 ~~-g~~~~~~~~~~aa~~~~iPvv~~~~g~-~s~~~~~~~~~~r~~~~~~ad~~~~~s~~~~~~l~~~G~~~~kI~vign 171 (363)
T cd03786 94 VL-GDTNETLAAALAAFKLGIPVAHVEAGL-RSFDRGMPDEENRHAIDKLSDLHFAPTEEARRNLLQEGEPPERIFVVGN 171 (363)
T ss_pred Ee-CCchHHHHHHHHHHHcCCCEEEEeccc-ccCCCCCCchHHHHHHHHHhhhccCCCHHHHHHHHHcCCCcccEEEECc
Confidence 43 33322222334444333333221 21 1100011111 1355555554432221 244656665
Q ss_pred Cccc---cCCCCC-CCCCCCCCCCCCCCeEEEecCCC-----CcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHH
Q 002273 659 CFLC---YTPSPE-AGPVCPTPALTNGFITFGSFNNL-----AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHR 729 (944)
Q Consensus 659 ~~~~---~~~~~~-~~~~~~~~~~~~~~~~f~~~~~~-----~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~ 729 (944)
.... +.+... ....+...+++++.++..++++. .|..+.+++++.++... +.++++.+.+ ..+..
T Consensus 172 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~--~~~vi~~~~~----~~~~~ 245 (363)
T cd03786 172 TMIDALLRLLELAKKELILELLGLLPKKYILVTLHRVENVDDGEQLEEILEALAELAEE--DVPVVFPNHP----RTRPR 245 (363)
T ss_pred hHHHHHHHHHHhhccchhhhhcccCCCCEEEEEeCCccccCChHHHHHHHHHHHHHHhc--CCEEEEECCC----ChHHH
Confidence 4221 111111 11111233455565555566654 46677888888776543 4455554433 45677
Q ss_pred HHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcC
Q 002273 730 FLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVG 809 (944)
Q Consensus 730 ~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~g 809 (944)
+++.+.+.|+..++|.|.+... ..+....|..||+++-+. | +.+.||+++|+|||+....+ ..-.+...|
T Consensus 246 l~~~~~~~~~~~~~v~~~~~~~-~~~~~~l~~~ad~~v~~S---g-gi~~Ea~~~g~PvI~~~~~~-----~~~~~~~~g 315 (363)
T cd03786 246 IREAGLEFLGHHPNVLLISPLG-YLYFLLLLKNADLVLTDS---G-GIQEEASFLGVPVLNLRDRT-----ERPETVESG 315 (363)
T ss_pred HHHHHHhhccCCCCEEEECCcC-HHHHHHHHHcCcEEEEcC---c-cHHhhhhhcCCCEEeeCCCC-----ccchhhhee
Confidence 7777788887457899988654 466777789999998443 2 45789999999999975321 111233346
Q ss_pred CcccccCCHHHHHHHHHHHhcCHHHHHHHH
Q 002273 810 LKHLIAKNEDEYVQLALQLASDVTALANLR 839 (944)
Q Consensus 810 l~~~v~~~~~~y~~~a~~l~~d~~~~~~~r 839 (944)
..-++..|.++.++....+..|+..+..++
T Consensus 316 ~~~~~~~~~~~i~~~i~~ll~~~~~~~~~~ 345 (363)
T cd03786 316 TNVLVGTDPEAILAAIEKLLSDEFAYSLMS 345 (363)
T ss_pred eEEecCCCHHHHHHHHHHHhcCchhhhcCC
Confidence 655666678999999999999986655553
No 261
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.59 E-value=1.2e-06 Score=96.02 Aligned_cols=122 Identities=23% Similarity=0.229 Sum_probs=109.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 002273 327 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK 406 (944)
Q Consensus 327 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 406 (944)
..+...+...++++.|+..+++..+.+|+ +...++.++...++..+|++.+.++++..|.+...+...+..+...++
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 34455566678899999999999888865 566789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002273 407 MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 451 (944)
Q Consensus 407 ~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~a 451 (944)
++.|++..+++++..|++.+.|+.|+.+|...|++++|+..+..+
T Consensus 250 ~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 250 YELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999776643
No 262
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.58 E-value=4.5e-07 Score=102.33 Aligned_cols=139 Identities=22% Similarity=0.229 Sum_probs=95.9
Q ss_pred cCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHc-CCCCCcEEEccCccCcHHHHHhcccccEEecCCC
Q 002273 693 KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQL-GLESLRVDLLPLILLNHDHMQAYSLMDISLDTFP 771 (944)
Q Consensus 693 K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~-gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~ 771 (944)
++.+.+++++..+.+..|+.++++.+++ ...++.+.+...+. |+. +.+.. .+....|+.+|+++-+
T Consensus 202 ~~~~~l~~a~~~l~~~~~~~~~ii~~~~---~~~~~~~~~~~~~~~~~~---v~~~~-----~~~~~~~~~aDl~v~~-- 268 (380)
T PRK00025 202 RLLPPFLKAAQLLQQRYPDLRFVLPLVN---PKRREQIEEALAEYAGLE---VTLLD-----GQKREAMAAADAALAA-- 268 (380)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEEEecCC---hhhHHHHHHHHhhcCCCC---eEEEc-----ccHHHHHHhCCEEEEC--
Confidence 4568888999988888899998887642 24556677777777 663 44432 3567788999999864
Q ss_pred CCCcccHHHhhhcCCcEEecCCCcccccchhHHH---hhcCC----------ccccc--CCHHHHHHHHHHHhcCHHHHH
Q 002273 772 YAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLL---TKVGL----------KHLIA--KNEDEYVQLALQLASDVTALA 836 (944)
Q Consensus 772 ~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l---~~~gl----------~~~v~--~~~~~y~~~a~~l~~d~~~~~ 836 (944)
+|++++||+++|+|||+.+.-.......+..+ ...|+ ++++. .|+++..+....|.+|++.++
T Consensus 269 --sG~~~lEa~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ll~~~~~~~ 346 (380)
T PRK00025 269 --SGTVTLELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEATPEKLARALLPLLADGARRQ 346 (380)
T ss_pred --ccHHHHHHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCCCHHHHHHHHHHHhcCHHHHH
Confidence 47788899999999998654322221111111 12232 33443 467899999999999999999
Q ss_pred HHHHHHHHHh
Q 002273 837 NLRMSLRDLM 846 (944)
Q Consensus 837 ~~r~~~~~~~ 846 (944)
.+++.+++..
T Consensus 347 ~~~~~~~~~~ 356 (380)
T PRK00025 347 ALLEGFTELH 356 (380)
T ss_pred HHHHHHHHHH
Confidence 9999875443
No 263
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.57 E-value=0.00077 Score=73.60 Aligned_cols=376 Identities=14% Similarity=0.063 Sum_probs=231.9
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChh
Q 002273 72 EIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKP 151 (944)
Q Consensus 72 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 151 (944)
++-++.+|.+..+|+.+..-+..+ .+++..+.|++.+...|..+.+|.......+..++|+.-...|.+++...-+ .+
T Consensus 10 ~~rie~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLn-lD 87 (656)
T KOG1914|consen 10 RERIEENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLN-LD 87 (656)
T ss_pred HHHHhcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhh-Hh
Confidence 677899999999999999887766 9999999999999999999999999999999999999999999999864332 22
Q ss_pred HHhHHHHHHHHHHHHHHHcCChHHHHH----HHHHHHh---hCCCCHHHHHHHHHHHH---------HcCCHHHHHHHHH
Q 002273 152 AAECLAIVLTDLGTSLKLAGNTQDGIQ----KYYEALK---IDPHYAPAYYNLGVVYS---------ELMQYDTALGCYE 215 (944)
Q Consensus 152 ~~~~la~~~~~lg~~~~~~g~~~~A~~----~~~~al~---~~p~~~~~~~~la~~~~---------~~g~~~~A~~~~~ 215 (944)
.|. +| +-.+-...++...+.. .|+-++. .++.....|...+..+. .+.+.+.-.+.|+
T Consensus 88 LW~----lY--l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYq 161 (656)
T KOG1914|consen 88 LWK----LY--LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQ 161 (656)
T ss_pred HHH----HH--HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHH
Confidence 221 11 1122223344333333 2333332 35666666666555432 3346667778888
Q ss_pred HHHHhCCCCHHH-HH-------------HHHHHHHHcCCHHHHHHHHHHHHHhC-------CC----c-HHH--HHHHHH
Q 002273 216 KAALERPMYAEA-YC-------------NMGVIYKNRGDLESAIACYERCLAVS-------PN----F-EIA--KNNMAI 267 (944)
Q Consensus 216 ~al~~~p~~~~~-~~-------------~la~~~~~~g~~~~A~~~~~~al~~~-------p~----~-~~~--~~~la~ 267 (944)
+++..--.+.+- |. ..-.+-.....|..|...+++....- |. . ... ...+-.
T Consensus 162 ral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~ 241 (656)
T KOG1914|consen 162 RALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWK 241 (656)
T ss_pred HHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHH
Confidence 887643232221 11 11112223334555555555544331 11 0 000 000000
Q ss_pred HHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-------
Q 002273 268 ALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGD--INQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK------- 338 (944)
Q Consensus 268 ~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~------- 338 (944)
-+++..+ .+ .+.. ..+. -....-.|++++..-+-.+++|+..+..+...++
T Consensus 242 n~I~wEk------------sN-pL~t-------~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d 301 (656)
T KOG1914|consen 242 NWIKWEK------------SN-PLRT-------LDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGD 301 (656)
T ss_pred HHHHHHh------------cC-Cccc-------ccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcc
Confidence 0111000 00 0000 0011 0233345677777777788888877776666665
Q ss_pred -------hHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHcCC
Q 002273 339 -------FDMAIVFYELAFHFN-PHCAEACNNLGVIYKDRD---NLDKAVECYQMALSIKPNFS-QSLNNLGVVYTVQGK 406 (944)
Q Consensus 339 -------~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~ 406 (944)
.+++..+|++++..- ..+...++.++..-...- +++.....+++++.+...++ -++..+-..-.+..=
T Consensus 302 ~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eG 381 (656)
T KOG1914|consen 302 VPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEG 381 (656)
T ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhh
Confidence 678888999888753 334455555555443333 37778888888887754433 356666666667777
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhCCCChhhhhhHHHHhhhccCC
Q 002273 407 MDAAAEMIEKAIAANPTYAEAYNNLGVL-YRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEG 475 (944)
Q Consensus 407 ~~~A~~~l~~al~~~p~~~~a~~~la~~-~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~ 475 (944)
.+.|...|.++-+..-....++..-|.+ |...++.+-|...|+-.++..++.+.-....+..+.++.+.
T Consensus 382 lkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd 451 (656)
T KOG1914|consen 382 LKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDD 451 (656)
T ss_pred HHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcc
Confidence 8899999999987654433444443333 56789999999999999999999988777666666666543
No 264
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.56 E-value=2.1e-05 Score=78.91 Aligned_cols=184 Identities=16% Similarity=0.095 Sum_probs=136.4
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHH
Q 002273 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157 (944)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 157 (944)
.+..++..|...++.|++++|++.|+.+....|.. ..+...++.++++.+++++|+...++.+.+.|.++++ .
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~----d 108 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA----D 108 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh----h
Confidence 47789999999999999999999999999988765 4789999999999999999999999999999998876 3
Q ss_pred HHHHHHHHHHHHc--------CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 002273 158 IVLTDLGTSLKLA--------GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYC 229 (944)
Q Consensus 158 ~~~~~lg~~~~~~--------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 229 (944)
.+++..|.++... .-..+|+..|++.++..|++.-+-..... +..+... -..--.
T Consensus 109 Y~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~-----------i~~~~d~------LA~~Em 171 (254)
T COG4105 109 YAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKAR-----------IVKLNDA------LAGHEM 171 (254)
T ss_pred HHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHH-----------HHHHHHH------HHHHHH
Confidence 3456666654432 22356777777777777775332211111 0111111 122335
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---HHHHHHHHHHHHhhhhhhhhHHHHHh
Q 002273 230 NMGVIYKNRGDLESAIACYERCLAVSPNFE---IAKNNMAIALTDLGTKTYGRALLLFR 285 (944)
Q Consensus 230 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~l~~~~~~~~~~a~~~~~ 285 (944)
.+|..|.+.|.+..|+..++.+++..|+.. +++..+..++..+|....++......
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 678999999999999999999999987754 56667778888888887666554443
No 265
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.54 E-value=1.8e-06 Score=94.47 Aligned_cols=118 Identities=17% Similarity=0.151 Sum_probs=108.9
Q ss_pred HHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHH
Q 002273 297 ELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKA 376 (944)
Q Consensus 297 ~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 376 (944)
.++...++++.|+..++++.+.+|+ +...++.++...++..+|++.+.++++.+|.+...+...+..+...++++.|
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lA 253 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELA 253 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 3455678899999999999988865 6667899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002273 377 VECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA 417 (944)
Q Consensus 377 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~a 417 (944)
+++.+++.+..|++...|+.|+.+|..+|++++|+..++.+
T Consensus 254 L~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 254 LEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 99999999999999999999999999999999999877754
No 266
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=0.0027 Score=68.48 Aligned_cols=371 Identities=12% Similarity=0.037 Sum_probs=236.1
Q ss_pred HHHHHHHHHHHHHhC--CHHHHHHHHHHHHhcCCCC---HHHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCChhHHhH
Q 002273 82 VEAHIGKGICLQMQN--MGRLAFDSFSEAVKLDPQN---ACAHTHCGILY-KDEGRLVEAAESYHKALSADPSYKPAAEC 155 (944)
Q Consensus 82 ~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~---~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 155 (944)
..++..+|..+...| +..+++++++..+...|.+ +.....+|.++ ....+.+.|...++++..+...-+..+..
T Consensus 7 a~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydv 86 (629)
T KOG2300|consen 7 AEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDV 86 (629)
T ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhh
Confidence 356778888888888 8999999999998877654 34566777654 45789999999999998776554444344
Q ss_pred HHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HH
Q 002273 156 LAIVLTDLGTSLKLAG-NTQDGIQKYYEALKIDPHYA----PAYYNLGVVYSELMQYDTALGCYEKAALERPMY----AE 226 (944)
Q Consensus 156 la~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~ 226 (944)
.-..+..++.++.... .+..+...+.+++++....+ ...+.|++++.-..++..|++.+.-..+....- ..
T Consensus 87 Kf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~~~ylr 166 (629)
T KOG2300|consen 87 KFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHICFPYLR 166 (629)
T ss_pred hhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhccccccchhhhHHHH
Confidence 4445666777777766 88999999999999976654 456788999999999999999854332221111 12
Q ss_pred HHHHH--HHHHHHcCCH---HHHHHHHHHHHHhCCCcHHH-------HHHHHHHH-HHhhhhhhhhHHHHH----hhc-C
Q 002273 227 AYCNM--GVIYKNRGDL---ESAIACYERCLAVSPNFEIA-------KNNMAIAL-TDLGTKTYGRALLLF----RLN-G 288 (944)
Q Consensus 227 ~~~~l--a~~~~~~g~~---~~A~~~~~~al~~~p~~~~~-------~~~la~~l-~~~~~~~~~~a~~~~----~~~-~ 288 (944)
+.+.+ +.++....+. ..+.....+..+....++.- +..+..++ ...|+....+..... ... .
T Consensus 167 ~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~n~~sdk~~~E~LkvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtis 246 (629)
T KOG2300|consen 167 MLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQNISSDKTQKEMLKVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTIS 246 (629)
T ss_pred HHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccC
Confidence 22222 2333333333 34444444444433333211 11222222 222332221111111 000 0
Q ss_pred CC--------CCc---hhHH-----------------HhhhcCCHHHHHHHHHHHHHhCCC------CH--------HHH
Q 002273 289 SN--------FQS---PFFE-----------------LVKLEGDINQGVAYYKKALYYNWH------YA--------DAM 326 (944)
Q Consensus 289 ~~--------~~~---~~~~-----------------l~~~~~~~~~A~~~~~~al~~~p~------~~--------~~~ 326 (944)
.. +.+ .++. --...|-+++|.++-++++....+ .. ..+
T Consensus 247 t~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~L 326 (629)
T KOG2300|consen 247 TSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILL 326 (629)
T ss_pred CCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 00 000 0010 011357788888888888765221 11 234
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhh---CCC-------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC-C--HHH
Q 002273 327 YNLGVAYGEMLKFDMAIVFYELAFHF---NPH-------CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN-F--SQS 393 (944)
Q Consensus 327 ~~la~~~~~~g~~~~A~~~~~~al~~---~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~--~~~ 393 (944)
-.+..+-.-.|++.+|++....+.+. .|. .+.+.+.+|......+.++.|...|..|.++... + ..+
T Consensus 327 E~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~ 406 (629)
T KOG2300|consen 327 EHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFC 406 (629)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 45566677789999999888877765 343 2567778888888899999999999999887543 2 335
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 002273 394 LNNLGVVYTVQGKMDAAAEMIEKAIAANPTY----------AEAYNNLGVLYRDAGSISLAIDAYEQCLKID 455 (944)
Q Consensus 394 ~~~la~~~~~~g~~~~A~~~l~~al~~~p~~----------~~a~~~la~~~~~~g~~~eA~~~~~~al~l~ 455 (944)
..++|..|...|+-+.-.+.++ .+.|.+ ..+++..|.....++++.||....++.++..
T Consensus 407 nlnlAi~YL~~~~~ed~y~~ld---~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 407 NLNLAISYLRIGDAEDLYKALD---LIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred HHhHHHHHHHhccHHHHHHHHH---hcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 6788999999887554433333 334442 4577888889999999999999999999986
No 267
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.52 E-value=3e-06 Score=77.48 Aligned_cols=107 Identities=13% Similarity=0.147 Sum_probs=97.5
Q ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCH---HHH
Q 002273 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSG---NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA---CAH 119 (944)
Q Consensus 46 ~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~ 119 (944)
.++..++..|...++.|+|.+|++.|+.+....|. ...+.+.++.+|++.+++++|+..+++.++++|.++ .++
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~ 87 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAY 87 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 47889999999999999999999999999999886 468999999999999999999999999999999875 578
Q ss_pred HHHHHHHHHcCC---------------HHHHHHHHHHHHHcCCCChhH
Q 002273 120 THCGILYKDEGR---------------LVEAAESYHKALSADPSYKPA 152 (944)
Q Consensus 120 ~~la~~~~~~g~---------------~~~A~~~~~~al~~~p~~~~~ 152 (944)
+..|.+++.+.. ..+|...|++.++..|++..+
T Consensus 88 Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya 135 (142)
T PF13512_consen 88 YMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA 135 (142)
T ss_pred HHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence 999999998876 889999999999999997654
No 268
>PLN02275 transferase, transferring glycosyl groups
Probab=98.51 E-value=6.5e-07 Score=100.28 Aligned_cols=131 Identities=13% Similarity=0.122 Sum_probs=92.5
Q ss_pred eEEEecCC--CCcCCHHHHHHHHHHH-----------------hHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCc
Q 002273 683 ITFGSFNN--LAKITPKVLQVWARIL-----------------CAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLR 743 (944)
Q Consensus 683 ~~f~~~~~--~~K~~~~~~~~~~~il-----------------~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~r 743 (944)
++++...+ ..|..+.++++...+. ...|+.+|+++|.| +.++.+++.++++|++ +
T Consensus 214 ~~i~~~grl~~~k~~~~li~a~~~l~~~~~~~~~~~~~~~~~~~~~~~i~l~ivG~G----~~~~~l~~~~~~~~l~-~- 287 (371)
T PLN02275 214 ALVVSSTSWTPDEDFGILLEAAVMYDRRVAARLNESDSASGKQSLYPRLLFIITGKG----PQKAMYEEKISRLNLR-H- 287 (371)
T ss_pred EEEEEeCceeccCCHHHHHHHHHHHHhhhhhccccccccccccccCCCeEEEEEeCC----CCHHHHHHHHHHcCCC-c-
Confidence 34444454 4788888888877664 23589999999877 4678899999999994 4
Q ss_pred EEEcc-CccCcHHHHHhcccccEEecCCC----CCCcccHHHhhhcCCcEEecCCCcccccchh--HHHhhcCCcccccC
Q 002273 744 VDLLP-LILLNHDHMQAYSLMDISLDTFP----YAGTTTTCESLYMGVPCVTMAGSVHAHNVGV--SLLTKVGLKHLIAK 816 (944)
Q Consensus 744 v~~~~-~~~~~~~~~~~~~~~Di~Ld~~~----~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~--~~l~~~gl~~~v~~ 816 (944)
|+|.+ .++ .++....|..+||++-+.+ .+-+++.+|||+||+|||+ +++|. -++.. |-..++..
T Consensus 288 v~~~~~~~~-~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVVa-------~~~gg~~eiv~~-g~~G~lv~ 358 (371)
T PLN02275 288 VAFRTMWLE-AEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCA-------VSYSCIGELVKD-GKNGLLFS 358 (371)
T ss_pred eEEEcCCCC-HHHHHHHHHhCCEEEEeccccccccccHHHHHHHHCCCCEEE-------ecCCChHHHccC-CCCeEEEC
Confidence 77765 465 6888999999999984321 3458899999999999998 44431 12222 44455566
Q ss_pred CHHHHHHHHHHH
Q 002273 817 NEDEYVQLALQL 828 (944)
Q Consensus 817 ~~~~y~~~a~~l 828 (944)
|.+++.+...+|
T Consensus 359 ~~~~la~~i~~l 370 (371)
T PLN02275 359 SSSELADQLLEL 370 (371)
T ss_pred CHHHHHHHHHHh
Confidence 777776655544
No 269
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.51 E-value=2.6e-05 Score=73.07 Aligned_cols=149 Identities=17% Similarity=0.150 Sum_probs=123.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q 002273 303 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH-FNPHCAEACNNLGVIYKDRDNLDKAVECYQ 381 (944)
Q Consensus 303 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 381 (944)
=+.+.......+.+...|. ..-.+.++..+.+.|++.+|...|++++. +...++..+..++...+..+++..|...++
T Consensus 70 ldP~R~~Rea~~~~~~ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe 148 (251)
T COG4700 70 LDPERHLREATEELAIAPT-VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLE 148 (251)
T ss_pred cChhHHHHHHHHHHhhchh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 3445555555555665555 34567899999999999999999999886 467788899999999999999999999999
Q ss_pred HHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002273 382 MALSIKPN--FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 453 (944)
Q Consensus 382 ~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~ 453 (944)
+..+.+|. .++....+|++|...|++.+|...|+.++...|+ +.+....+..+.++|+..+|..-+....+
T Consensus 149 ~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 149 DLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 99999875 4678888999999999999999999999999987 77888889999999998888877665543
No 270
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.49 E-value=9e-07 Score=83.49 Aligned_cols=105 Identities=27% Similarity=0.308 Sum_probs=90.9
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002273 360 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFS-----QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 434 (944)
Q Consensus 360 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~ 434 (944)
+-.-|.-++..|+|++|..-|..|+++.|..+ -.+.+.|.++.+++.++.|+..+.++++++|.+..++...|.+
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea 177 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA 177 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence 33456677788888999988999988887654 3678889999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCChhhhhh
Q 002273 435 YRDAGSISLAIDAYEQCLKIDPDSRNAGQN 464 (944)
Q Consensus 435 ~~~~g~~~eA~~~~~~al~l~P~~~~a~~~ 464 (944)
|.++..+++|++.|++.++++|...+++..
T Consensus 178 yek~ek~eealeDyKki~E~dPs~~ear~~ 207 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPSRREAREA 207 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcchHHHHHH
Confidence 999999999999999999999998776643
No 271
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.49 E-value=0.0033 Score=67.43 Aligned_cols=137 Identities=11% Similarity=0.017 Sum_probs=99.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 002273 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNV-----EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (944)
Q Consensus 50 ~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (944)
.+...|..+.+++++.+|.++|.++.+...+.+ +.+.++....+-+++.+.-...+...-+..|..+....-.|.
T Consensus 8 llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L 87 (549)
T PF07079_consen 8 LLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKAL 87 (549)
T ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 355678999999999999999999988655442 344444455556677777777777666778888888888999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCChhHH------hHHHHHH--HHHHHHHHHcCChHHHHHHHHHHHhh
Q 002273 125 LYKDEGRLVEAAESYHKALSADPSYKPAA------ECLAIVL--TDLGTSLKLAGNTQDGIQKYYEALKI 186 (944)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~------~~la~~~--~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (944)
..++.+++.+|++.+......-......+ ......+ ...+.++...|.+.++...+++.+..
T Consensus 88 ~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 88 VAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred HHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 99999999999998877655422221111 1111111 23577888999999999999988765
No 272
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.49 E-value=3.1e-06 Score=76.32 Aligned_cols=94 Identities=21% Similarity=0.193 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC---CHHHHHHHH
Q 002273 325 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSIKPN---FSQSLNNLG 398 (944)
Q Consensus 325 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la 398 (944)
+++.+|.++-..|+.++|+.+|++++...... ..++..+|..+...|++++|+..+++++...|+ +..+...++
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 45566666666666666666666666653332 345666666666666666666666666666555 455555566
Q ss_pred HHHHHcCCHHHHHHHHHHHH
Q 002273 399 VVYTVQGKMDAAAEMIEKAI 418 (944)
Q Consensus 399 ~~~~~~g~~~~A~~~l~~al 418 (944)
.++...|++++|++.+-.++
T Consensus 83 l~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 66666666666666665554
No 273
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=98.48 E-value=1.7e-06 Score=96.25 Aligned_cols=155 Identities=21% Similarity=0.281 Sum_probs=100.2
Q ss_pred CCCCCCeEEEecCCC--CcCCHH-HHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCc
Q 002273 677 ALTNGFITFGSFNNL--AKITPK-VLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLN 753 (944)
Q Consensus 677 ~~~~~~~~f~~~~~~--~K~~~~-~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~ 753 (944)
+++++..+++++.+. .|.... +++++.++.. ++.++++.+++ ...+.+++.++++|+ .++|.|. . .
T Consensus 174 ~~~~~~~~i~~~gg~~~~~~~~~~l~~a~~~l~~--~~~~~~~~~g~----~~~~~l~~~~~~~~l-~~~v~~~-~---~ 242 (348)
T TIGR01133 174 GLREGKPTILVLGGSQGAKILNELVPKALAKLAE--KGIQIVHQTGK----NDLEKVKNVYQELGI-EAIVTFI-D---E 242 (348)
T ss_pred CCCCCCeEEEEECCchhHHHHHHHHHHHHHHHhh--cCcEEEEECCc----chHHHHHHHHhhCCc-eEEecCc-c---c
Confidence 455566667776543 333333 2355555443 23444443332 123677777888888 4566665 1 2
Q ss_pred HHHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCccc--ccchhHHHhhcCCccccc-C--CHHHHHHHHHHH
Q 002273 754 HDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHA--HNVGVSLLTKVGLKHLIA-K--NEDEYVQLALQL 828 (944)
Q Consensus 754 ~~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~--~r~~~~~l~~~gl~~~v~-~--~~~~y~~~a~~l 828 (944)
+....|..||+++-+ +|++|++|||.+|+|||+.+-.... .+..+.++...|..-++. . +++++.+....|
T Consensus 243 -~~~~~l~~ad~~v~~---~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~l 318 (348)
T TIGR01133 243 -NMAAAYAAADLVISR---AGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKL 318 (348)
T ss_pred -CHHHHHHhCCEEEEC---CChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHHH
Confidence 567778889999853 4678899999999999986422111 222344666656555553 2 499999999999
Q ss_pred hcCHHHHHHHHHHHHHHh
Q 002273 829 ASDVTALANLRMSLRDLM 846 (944)
Q Consensus 829 ~~d~~~~~~~r~~~~~~~ 846 (944)
..|++.++++++..++..
T Consensus 319 l~~~~~~~~~~~~~~~~~ 336 (348)
T TIGR01133 319 LLDPANLEAMAEAARKLA 336 (348)
T ss_pred HcCHHHHHHHHHHHHhcC
Confidence 999999999998887654
No 274
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.47 E-value=7.4e-06 Score=83.85 Aligned_cols=271 Identities=16% Similarity=0.197 Sum_probs=177.5
Q ss_pred HHHHhHhCCccEEEecCCCCCCCchhhhc-cCCcceeeecccCCCCCC-------------C------------------
Q 002273 581 VAAMVREDKIDILVELTGHTANNKLGMMA-CQPAPVQVTWIGYPNTTG-------------L------------------ 628 (944)
Q Consensus 581 ~a~~i~~d~idilvdl~g~t~~~~~~~~a-~r~ApvQ~~~~G~p~t~g-------------~------------------ 628 (944)
.-+.|-.--+||-||.+|+.. ..++|. +|--|| ++|.-||.-+- +
T Consensus 142 ~~Eai~r~~Pdi~IDtMGY~f--s~p~~r~l~~~~V-~aYvHYP~iS~DML~~l~qrq~s~~l~~~KlaY~rlFa~lY~~ 218 (465)
T KOG1387|consen 142 AFEAIIRFPPDIFIDTMGYPF--SYPIFRRLRRIPV-VAYVHYPTISTDMLKKLFQRQKSGILVWGKLAYWRLFALLYQS 218 (465)
T ss_pred HHHHHHhCCchheEecCCCcc--hhHHHHHHccCce-EEEEecccccHHHHHHHHhhhhcchhhhHHHHHHHHHHHHHHh
Confidence 345666778999999999986 567776 454554 55666774321 1
Q ss_pred --CCccEEEecCCCCCcccccccccceEEcCCCccccCCCCCCCCCCCCCC-CCCCCeEEEecC--CCCcCCHHHHHHHH
Q 002273 629 --PTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPA-LTNGFITFGSFN--NLAKITPKVLQVWA 703 (944)
Q Consensus 629 --~~~Dy~i~d~~~~p~~~~~~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~-~~~~~~~f~~~~--~~~K~~~~~~~~~~ 703 (944)
...|++++.. .=-..+--.+|.--.|.+.|.|.... ......+ ..+.-++.-+.. |+.|.|+ ++++++
T Consensus 219 ~G~~ad~vm~Ns-----sWT~nHI~qiW~~~~~~iVyPPC~~e-~lks~~~te~~r~~~ll~l~Q~RPEKnH~-~Lql~A 291 (465)
T KOG1387|consen 219 AGSKADIVMTNS-----SWTNNHIKQIWQSNTCSIVYPPCSTE-DLKSKFGTEGERENQLLSLAQFRPEKNHK-ILQLFA 291 (465)
T ss_pred ccccceEEEecc-----hhhHHHHHHHhhccceeEEcCCCCHH-HHHHHhcccCCcceEEEEEeecCcccccH-HHHHHH
Confidence 1245554431 10111222344443444455554321 1111111 122233344444 8899999 899888
Q ss_pred HHHhHcCC------ceEEEecCCC--CCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCC-CCCC
Q 002273 704 RILCAVPN------SRLVVKCKPF--CCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTF-PYAG 774 (944)
Q Consensus 704 ~il~~~p~------~~l~~~~~~~--~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~-~~~~ 774 (944)
--+.+.|. ..|.++|.-. .+......|+.+++.+.|+ +.|.|.-.+| .++....++-|-+.+.+- -...
T Consensus 292 l~~~~~pl~a~~~~iKL~ivGScRneeD~ervk~Lkd~a~~L~i~-~~v~F~~N~P-y~~lv~lL~~a~iGvh~MwNEHF 369 (465)
T KOG1387|consen 292 LYLKNEPLEASVSPIKLIIVGSCRNEEDEERVKSLKDLAEELKIP-KHVQFEKNVP-YEKLVELLGKATIGVHTMWNEHF 369 (465)
T ss_pred HHHhcCchhhccCCceEEEEeccCChhhHHHHHHHHHHHHhcCCc-cceEEEecCC-HHHHHHHhccceeehhhhhhhhc
Confidence 77766655 7788886422 2344567888999999995 6799998888 799999999999999998 4588
Q ss_pred cccHHHhhhcC-CcEEecCCCcccccchhHHHhhcCC-cccccCCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhhcCCC
Q 002273 775 TTTTCESLYMG-VPCVTMAGSVHAHNVGVSLLTKVGL-KHLIAKNEDEYVQLALQLAS-DVTALANLRMSLRDLMSKSPV 851 (944)
Q Consensus 775 ~~t~~eal~~g-vPvvt~~g~~~~~r~~~~~l~~~gl-~~~v~~~~~~y~~~a~~l~~-d~~~~~~~r~~~~~~~~~~~~ 851 (944)
|.+.+|+|++| +|||--.|.....=|.- -.|- ..+.+.|.+||++.-+.... |.+.+..+|...|..+ ..
T Consensus 370 GIsVVEyMAAGlIpi~h~SgGP~lDIV~~----~~G~~tGFla~t~~EYaE~iLkIv~~~~~~r~~~r~~AR~s~---~R 442 (465)
T KOG1387|consen 370 GISVVEYMAAGLIPIVHNSGGPLLDIVTP----WDGETTGFLAPTDEEYAEAILKIVKLNYDERNMMRRNARKSL---AR 442 (465)
T ss_pred chhHHHHHhcCceEEEeCCCCCceeeeec----cCCccceeecCChHHHHHHHHHHHHcCHHHHHHHHHHHHHHH---HH
Confidence 99999999999 56765554433222210 1122 35779999999998887766 6666888888888775 45
Q ss_pred CChHHHHHHHHHHHHHHHH
Q 002273 852 CDGQNFALGLESTYRNMWH 870 (944)
Q Consensus 852 ~~~~~~~~~~e~~~~~~~~ 870 (944)
|....|-++++..++.+.+
T Consensus 443 FsE~~F~kd~~~~i~kll~ 461 (465)
T KOG1387|consen 443 FGELKFDKDWENPICKLLE 461 (465)
T ss_pred hhHHHHHHhHhHHHHHhhc
Confidence 8888999999988877654
No 275
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.47 E-value=2e-06 Score=81.22 Aligned_cols=106 Identities=24% Similarity=0.241 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 002273 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGN-----VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (944)
Q Consensus 49 ~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (944)
..+-.-|..++.+|+|++|..-|..+|+..|.- ...|.+.|.++++++.++.|++.+.++++++|.+..++...+
T Consensus 96 d~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRA 175 (271)
T KOG4234|consen 96 DSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRA 175 (271)
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHH
Confidence 345556889999999999999999999999863 457788999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCChhHHh
Q 002273 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAE 154 (944)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 154 (944)
.+|.++.++++|++.|.++++.+|....+..
T Consensus 176 eayek~ek~eealeDyKki~E~dPs~~ear~ 206 (271)
T KOG4234|consen 176 EAYEKMEKYEEALEDYKKILESDPSRREARE 206 (271)
T ss_pred HHHHhhhhHHHHHHHHHHHHHhCcchHHHHH
Confidence 9999999999999999999999999766543
No 276
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.47 E-value=4.4e-07 Score=73.82 Aligned_cols=67 Identities=22% Similarity=0.253 Sum_probs=56.0
Q ss_pred HHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 002273 58 LRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (944)
Q Consensus 58 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (944)
++..|+|++|+..|+++++.+|++..+++.+|.++...|++++|...+++++..+|+++.++..++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 3577888889999999888888888888888999888899999998888888888888777776664
No 277
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.46 E-value=3.2e-06 Score=94.82 Aligned_cols=160 Identities=16% Similarity=0.082 Sum_probs=103.7
Q ss_pred CCCeEEEecCCCC-cCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHH
Q 002273 680 NGFITFGSFNNLA-KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 758 (944)
Q Consensus 680 ~~~~~f~~~~~~~-K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 758 (944)
.+.+++|.+++.. |... ++..++.+..|+..|+|+|.+-.. ..... + .. .++|.|+|.++ +++...
T Consensus 203 ~~~~~i~y~G~l~~~~d~---~ll~~la~~~p~~~~vliG~~~~~-~~~~~----~--~~--~~nV~~~G~~~-~~~l~~ 269 (373)
T cd04950 203 LPRPVIGYYGAIAEWLDL---ELLEALAKARPDWSFVLIGPVDVS-IDPSA----L--LR--LPNVHYLGPKP-YKELPA 269 (373)
T ss_pred CCCCEEEEEeccccccCH---HHHHHHHHHCCCCEEEEECCCcCc-cChhH----h--cc--CCCEEEeCCCC-HHHHHH
Confidence 3455677777664 4443 455667778899999999865111 01111 1 11 47899999987 688999
Q ss_pred hcccccEEecCCCC------CCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccccCCHHHHHHHHHHH-hcC
Q 002273 759 AYSLMDISLDTFPY------AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQL-ASD 831 (944)
Q Consensus 759 ~~~~~Di~Ld~~~~------~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~l-~~d 831 (944)
.++.+||+|-|+.. +.++.++|+|+||+|||+.. ++ .+....+..-+++.|.+++++...+. ..+
T Consensus 270 ~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~-------~~-~~~~~~~~~~~~~~d~~~~~~ai~~~l~~~ 341 (373)
T cd04950 270 YLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATP-------LP-EVRRYEDEVVLIADDPEEFVAAIEKALLED 341 (373)
T ss_pred HHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecC-------cH-HHHhhcCcEEEeCCCHHHHHHHHHHHHhcC
Confidence 99999999988743 23567999999999999843 32 22232232234567899999999884 444
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 002273 832 VTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 866 (944)
Q Consensus 832 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 866 (944)
...+...+ +. +.+. ++++..+..+++..+
T Consensus 342 ~~~~~~~~---~~-~~~~--~sW~~~a~~~~~~l~ 370 (373)
T cd04950 342 GPARERRR---LR-LAAQ--NSWDARAAEMLEALQ 370 (373)
T ss_pred CchHHHHH---HH-HHHH--CCHHHHHHHHHHHHH
Confidence 33222211 11 3323 789999998886554
No 278
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=98.46 E-value=2.5e-06 Score=103.57 Aligned_cols=178 Identities=16% Similarity=0.147 Sum_probs=123.3
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCC----ceEEEecCCCCCH-HHHHHHHHHHHHc--------CC-CCCcE
Q 002273 681 GFITFGSFNNL--AKITPKVLQVWARILCAVPN----SRLVVKCKPFCCD-SVRHRFLSTLEQL--------GL-ESLRV 744 (944)
Q Consensus 681 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~----~~l~~~~~~~~~~-~~~~~~~~~~~~~--------gi-~~~rv 744 (944)
+..++.++.|+ .|..+..++++.++++..|+ .+|++++.|..+. +..+.+++.+.+. |. +..-|
T Consensus 264 ~~~~il~VgRl~~~Kgi~~~l~A~~~ll~~~p~~~~~v~lv~v~~~sr~~~~~~~~l~~~~~~~v~~in~~~~~~~~~pv 343 (726)
T PRK14501 264 GRKIILSIDRLDYTKGIPRRLLAFERFLEKNPEWRGKVRLVQVAVPSRTGVPQYQEMKREIDELVGRINGEFGTVDWTPI 343 (726)
T ss_pred CCEEEEEecCcccccCHHHHHHHHHHHHHhCccccCCEEEEEEecCCCcchHHHHHHHHHHHHHHHHHHhhcCCCCcceE
Confidence 44567777766 89999999999999999996 5788876443221 2333444444332 22 11124
Q ss_pred -EEccCccCcHHHHHhcccccEEecCCCC-CCcccHHHhhhc-----CCcEEecCCCcccccchhH-HHhhcCCcccc--
Q 002273 745 -DLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYM-----GVPCVTMAGSVHAHNVGVS-LLTKVGLKHLI-- 814 (944)
Q Consensus 745 -~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~-----gvPvvt~~g~~~~~r~~~~-~l~~~gl~~~v-- 814 (944)
.|.+.++ ..+..+.|+.+||+|-|+-+ +-+.+++|||+| |+|||+ ...|++ -|. | .++
T Consensus 344 ~~~~~~~~-~~~l~~ly~~aDv~v~~S~~EG~~lv~~Eama~~~~~~g~~vls-------~~~G~~~~l~--~--~llv~ 411 (726)
T PRK14501 344 HYFYRSLP-FEELVALYRAADVALVTPLRDGMNLVAKEYVASRTDGDGVLILS-------EMAGAAAELA--E--ALLVN 411 (726)
T ss_pred EEEeCCCC-HHHHHHHHHhccEEEecccccccCcccceEEEEcCCCCceEEEe-------cccchhHHhC--c--CeEEC
Confidence 4556665 78999999999999999977 669999999999 556775 322311 111 1 222
Q ss_pred cCCHHHHHHHHHHHhcCH-HHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHh
Q 002273 815 AKNEDEYVQLALQLASDV-TALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRYC 873 (944)
Q Consensus 815 ~~~~~~y~~~a~~l~~d~-~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 873 (944)
..|.++..+...++.+++ +.+....+++++++. -||+..+++.+.+.|+.+|...-
T Consensus 412 P~d~~~la~ai~~~l~~~~~e~~~r~~~~~~~v~---~~~~~~w~~~~l~~l~~~~~~~~ 468 (726)
T PRK14501 412 PNDIEGIAAAIKRALEMPEEEQRERMQAMQERLR---RYDVHKWASDFLDELREAAEKNK 468 (726)
T ss_pred CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHHhhhh
Confidence 368899988888888754 444544456777653 48999999999999999997654
No 279
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=98.45 E-value=8.3e-07 Score=99.38 Aligned_cols=250 Identities=17% Similarity=0.136 Sum_probs=139.9
Q ss_pred HHHHHHhHhCCccEEEecCCCCCCC-chhhhccC--------CcceeeecccCCCCCCCCCccEEEecCCCCCccccccc
Q 002273 579 KKVAAMVREDKIDILVELTGHTANN-KLGMMACQ--------PAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKH 649 (944)
Q Consensus 579 ~~~a~~i~~d~idilvdl~g~t~~~-~~~~~a~r--------~ApvQ~~~~G~p~t~g~~~~Dy~i~d~~~~p~~~~~~~ 649 (944)
.++.+.|++.++|++|=.++ .+.+ ++...+.+ -+|-|-+|-|.-+..-....|.+++-- |....+|
T Consensus 79 ~~~~~~l~~~kPd~vi~~g~-~~~~~~~a~aa~~~gip~v~~i~P~~waw~~~~~r~l~~~~d~v~~~~----~~e~~~~ 153 (385)
T TIGR00215 79 KEVVQLAKQAKPDLLVGIDA-PDFNLTKELKKKDPGIKIIYYISPQVWAWRKWRAKKIEKATDFLLAIL----PFEKAFY 153 (385)
T ss_pred HHHHHHHHhcCCCEEEEeCC-CCccHHHHHHHhhCCCCEEEEeCCcHhhcCcchHHHHHHHHhHhhccC----CCcHHHH
Confidence 47888999999999987765 4333 33222211 122222232221112234455554321 2222333
Q ss_pred cc---ceEEcCCCccccCCC--CCCCCCCCCCCCCCCCeEEEecC--CC---CcCCHHHHHHHHHHHhHcCCceEEEecC
Q 002273 650 VE---ELIRLPECFLCYTPS--PEAGPVCPTPALTNGFITFGSFN--NL---AKITPKVLQVWARILCAVPNSRLVVKCK 719 (944)
Q Consensus 650 ~e---~~~~lp~~~~~~~~~--~~~~~~~~~~~~~~~~~~f~~~~--~~---~K~~~~~~~~~~~il~~~p~~~l~~~~~ 719 (944)
.+ +.....+......+. +.....+...+++.+..+++.+. +. .|+.+.++++...+.+..|+.++++...
T Consensus 154 ~~~g~~~~~vGnPv~~~~~~~~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~ 233 (385)
T TIGR00215 154 QKKNVPCRFVGHPLLDAIPLYKPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVV 233 (385)
T ss_pred HhcCCCEEEECCchhhhccccCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeC
Confidence 22 233333221110010 00001112235555554555442 33 5688999999999988899988866433
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCccccc
Q 002273 720 PFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHN 799 (944)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r 799 (944)
+. .....+.+..+..|. ..+|.+.+. +....|..+|+++-+. |++|+|++.+|+|+|....-..-+.
T Consensus 234 ~~---~~~~~~~~~~~~~~~-~~~v~~~~~-----~~~~~l~aADl~V~~S----Gt~tlEa~a~G~P~Vv~yk~~pl~~ 300 (385)
T TIGR00215 234 NF---KRRLQFEQIKAEYGP-DLQLHLIDG-----DARKAMFAADAALLAS----GTAALEAALIKTPMVVGYRMKPLTF 300 (385)
T ss_pred Cc---hhHHHHHHHHHHhCC-CCcEEEECc-----hHHHHHHhCCEEeecC----CHHHHHHHHcCCCEEEEEcCCHHHH
Confidence 21 233445555556666 457766543 2234778899999665 7788899999999887643333333
Q ss_pred chhHHH-------------hhcCCccccc--CCHHHHHHHHHHHhcCH----HHHHHHHHHHHHHh
Q 002273 800 VGVSLL-------------TKVGLKHLIA--KNEDEYVQLALQLASDV----TALANLRMSLRDLM 846 (944)
Q Consensus 800 ~~~~~l-------------~~~gl~~~v~--~~~~~y~~~a~~l~~d~----~~~~~~r~~~~~~~ 846 (944)
..+..+ ..-..+|++- -+++...+...+|..|+ +.++.+++.+++.+
T Consensus 301 ~~~~~~~~~~~~~~~nil~~~~~~pel~q~~~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~ 366 (385)
T TIGR00215 301 LIARRLVKTDYISLPNILANRLLVPELLQEECTPHPLAIALLLLLENGLKAYKEMHRERQFFEELR 366 (385)
T ss_pred HHHHHHHcCCeeeccHHhcCCccchhhcCCCCCHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHH
Confidence 322221 1222356663 36788899999999999 99999999887764
No 280
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.42 E-value=0.0001 Score=78.96 Aligned_cols=154 Identities=15% Similarity=0.087 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHcCCCCh-hHHhHHHHHHH
Q 002273 84 AHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKA-LSADPSYK-PAAECLAIVLT 161 (944)
Q Consensus 84 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a-l~~~p~~~-~~~~~la~~~~ 161 (944)
+.......+.+..+...+....+.+.....+.+.+++..+..++..|++.+|.+.+... +...+... .........+.
T Consensus 208 ~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~N 287 (696)
T KOG2471|consen 208 LQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNN 287 (696)
T ss_pred hhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeec
Confidence 33445556677777777777777777777788999999999999999999999887653 22222211 11112233467
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhh------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002273 162 DLGTSLKLAGNTQDGIQKYYEALKI------------------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM 223 (944)
Q Consensus 162 ~lg~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 223 (944)
++|.++++.+.|.-+..+|.++++. .....++.|+.|..|...|+.-.|.++|.++......
T Consensus 288 NlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~ 367 (696)
T KOG2471|consen 288 NLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHR 367 (696)
T ss_pred CcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhc
Confidence 8999999999999999999999962 1124678999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHH
Q 002273 224 YAEAYCNMGVIYKN 237 (944)
Q Consensus 224 ~~~~~~~la~~~~~ 237 (944)
++..|..++.+...
T Consensus 368 nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 368 NPRLWLRLAECCIM 381 (696)
T ss_pred CcHHHHHHHHHHHH
Confidence 99999999998765
No 281
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.42 E-value=8.7e-07 Score=95.94 Aligned_cols=68 Identities=24% Similarity=0.245 Sum_probs=49.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002273 387 KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA---YNNLGVLYRDAGSISLAIDAYEQCLKI 454 (944)
Q Consensus 387 ~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a---~~~la~~~~~~g~~~eA~~~~~~al~l 454 (944)
+|+++..++++|.+|..+|+|++|+..|+++++++|++.++ |+++|.+|..+|++++|++++++++++
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 56667777777777777777777777777777777777644 777777777777777777777777776
No 282
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.42 E-value=5e-06 Score=74.96 Aligned_cols=96 Identities=20% Similarity=0.191 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHH
Q 002273 358 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT---YAEAYNNL 431 (944)
Q Consensus 358 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~---~~~a~~~l 431 (944)
.+++.+|.++-..|+.++|+.+|++++...... ..++..+|..+..+|++++|+..+++++...|+ +..+...+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 478899999999999999999999999975544 468999999999999999999999999999888 77888889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 002273 432 GVLYRDAGSISLAIDAYEQCLK 453 (944)
Q Consensus 432 a~~~~~~g~~~eA~~~~~~al~ 453 (944)
+.++...|+.++|++.+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999988775
No 283
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=98.42 E-value=5.5e-06 Score=85.56 Aligned_cols=103 Identities=17% Similarity=0.074 Sum_probs=77.8
Q ss_pred EEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccc
Q 002273 684 TFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLM 763 (944)
Q Consensus 684 ~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~ 763 (944)
.+|.++. .|..+.+++++.++.+..|+.++++.|.+.. ...........+. .++|.+.+..+..++....+..+
T Consensus 109 ~~g~~~~-~k~~~~~~~a~~~l~~~~~~~~~~i~G~~~~----~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~ 182 (229)
T cd01635 109 FVGRLAP-EKGLDDLIEAFALLKERGPDLKLVIAGDGPE----REYLEELLAALLL-LDRVIFLGGLDPEELLALLLAAA 182 (229)
T ss_pred EEEeecc-cCCHHHHHHHHHHHHHhCCCeEEEEEeCCCC----hHHHHHHHHhcCC-cccEEEeCCCCcHHHHHHHhhcC
Confidence 4666554 5999999999999999999999999986532 2222222456666 58999999875344555555569
Q ss_pred cEEecCCCC-CCcccHHHhhhcCCcEEecC
Q 002273 764 DISLDTFPY-AGTTTTCESLYMGVPCVTMA 792 (944)
Q Consensus 764 Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~ 792 (944)
||+|-|... +.+++.+|||+||+|||+-.
T Consensus 183 di~l~~~~~e~~~~~~~Eam~~g~pvi~s~ 212 (229)
T cd01635 183 DVFVLPSLREGFGLVVLEAMACGLPVIATD 212 (229)
T ss_pred CEEEecccccCcChHHHHHHhCCCCEEEcC
Confidence 999988855 66999999999999999933
No 284
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.38 E-value=5.9e-06 Score=83.61 Aligned_cols=104 Identities=21% Similarity=0.249 Sum_probs=79.4
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHH
Q 002273 360 CNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---AEAYNNLGV 433 (944)
Q Consensus 360 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~---~~a~~~la~ 433 (944)
.++.|.-++..|+|.+|...|..-++..|+. +.+++.||.+++.+|++++|...|..+++..|+. +++++.||.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 5666666777777777777777777777765 4677888888888888888888888887776654 677888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChhhhh
Q 002273 434 LYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 463 (944)
Q Consensus 434 ~~~~~g~~~eA~~~~~~al~l~P~~~~a~~ 463 (944)
+..++|+.++|...|+++++..|+.+.+..
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 888888888888888888888887766554
No 285
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.37 E-value=1.1e-06 Score=71.45 Aligned_cols=58 Identities=28% Similarity=0.440 Sum_probs=23.7
Q ss_pred CCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 002273 370 RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA 427 (944)
Q Consensus 370 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a 427 (944)
.|++++|++.|+++++.+|++..+++.+|.+|.+.|++++|...+++++..+|+++..
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 61 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEY 61 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHH
Confidence 3344444444444444444444444444444444444444444444444444443333
No 286
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=98.34 E-value=1.5e-05 Score=96.65 Aligned_cols=181 Identities=14% Similarity=0.052 Sum_probs=127.5
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCce----EEEecCCC-CCHHHHHHHHHHHHHcC--CCC--Cc-----E
Q 002273 681 GFITFGSFNNL--AKITPKVLQVWARILCAVPNSR----LVVKCKPF-CCDSVRHRFLSTLEQLG--LES--LR-----V 744 (944)
Q Consensus 681 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~----l~~~~~~~-~~~~~~~~~~~~~~~~g--i~~--~r-----v 744 (944)
+..++.+..++ .|..+..+.++.++|+..|+.+ |++++.+. .+.+..+.+++.+++++ |.. .. |
T Consensus 278 ~~~lIl~VgRLd~~KGi~~lL~Afe~lL~~~P~~~~kvvLvqia~psr~~~~~y~~l~~~v~~l~g~In~~~g~~~~~pv 357 (797)
T PLN03063 278 GRKVILGVDRLDMIKGIPQKYLAFEKFLEENPEWRDKVMLVQIAVPTRNDVPEYQKLKSQVHELVGRINGRFGSVSSVPI 357 (797)
T ss_pred CCeEEEEecccccccCHHHHHHHHHHHHHhCccccCcEEEEEEecCCCCchHHHHHHHHHHHHHHHHhhcccccCCCcee
Confidence 33456666755 8999999999999999999864 34344332 23345566777777664 421 12 3
Q ss_pred EEccCccCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCc----EEecCCCcccccchhHHHhhcCCcccc--cCC
Q 002273 745 DLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVP----CVTMAGSVHAHNVGVSLLTKVGLKHLI--AKN 817 (944)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvP----vvt~~g~~~~~r~~~~~l~~~gl~~~v--~~~ 817 (944)
+++...-..++..+.|+.+||||-|+-+ |-+.+.+|||+||+| +|. |+++++-- .+|-..++ ..|
T Consensus 358 ~~l~~~v~~~el~aly~~ADvfvvtSlrEGmnLv~lEamA~g~p~~gvlVl-------Se~~G~~~-~l~~~allVnP~D 429 (797)
T PLN03063 358 HHLDCSVDFNYLCALYAITDVMLVTSLRDGMNLVSYEFVACQKAKKGVLVL-------SEFAGAGQ-SLGAGALLVNPWN 429 (797)
T ss_pred EEecCCCCHHHHHHHHHhCCEEEeCccccccCcchhhHheeecCCCCCEEe-------eCCcCchh-hhcCCeEEECCCC
Confidence 3333322368999999999999999987 779999999999998 555 66552111 12333333 468
Q ss_pred HHHHHHHHHHHhc-CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHH
Q 002273 818 EDEYVQLALQLAS-DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRY 872 (944)
Q Consensus 818 ~~~y~~~a~~l~~-d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 872 (944)
.++..+...++.+ ++++++...+++++.+. -+|...|++.+.+.+...|...
T Consensus 430 ~~~lA~AI~~aL~m~~~er~~r~~~~~~~v~---~~~~~~Wa~~fl~~l~~~~~~~ 482 (797)
T PLN03063 430 ITEVSSAIKEALNMSDEERETRHRHNFQYVK---THSAQKWADDFMSELNDIIVEA 482 (797)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhh---hCCHHHHHHHHHHHHHHHhhhh
Confidence 8998888888888 77777777777777753 3689999999999999988643
No 287
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=98.31 E-value=9.8e-05 Score=80.63 Aligned_cols=104 Identities=26% Similarity=0.351 Sum_probs=92.2
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 002273 364 GVIYKDRDNLDKAVECYQMALSIKPNFSQ-SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSIS 442 (944)
Q Consensus 364 a~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~ 442 (944)
|..+...|+...|++++..|+...|.... ...+||.++.+.|....|-..+.+++.+....+-.++.+|++|..+.+.+
T Consensus 614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 614 GLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred cceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhH
Confidence 33344589999999999999999987654 67899999999999999999999999999888999999999999999999
Q ss_pred HHHHHHHHHHhhCCCChhhhhhHHH
Q 002273 443 LAIDAYEQCLKIDPDSRNAGQNRLL 467 (944)
Q Consensus 443 eA~~~~~~al~l~P~~~~a~~~~~~ 467 (944)
.|++.|++|++++|+++.....+.+
T Consensus 694 ~a~~~~~~a~~~~~~~~~~~~~l~~ 718 (886)
T KOG4507|consen 694 GALEAFRQALKLTTKCPECENSLKL 718 (886)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHH
Confidence 9999999999999999887766543
No 288
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.31 E-value=3.2e-06 Score=69.81 Aligned_cols=69 Identities=22% Similarity=0.322 Sum_probs=53.4
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 002273 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (944)
Q Consensus 55 A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (944)
..+++.+++|++|+++++++++.+|+++..+..+|.++...|++++|+..++++++..|+++.+....+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 456777888888888888888888888888888888888888888888888888888887776655443
No 289
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.31 E-value=1.4e-05 Score=88.33 Aligned_cols=182 Identities=18% Similarity=0.137 Sum_probs=129.5
Q ss_pred CCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcC-----CceEEEecC-CCC-----CHHHHHHHHHHHHHcCCCC
Q 002273 675 TPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVP-----NSRLVVKCK-PFC-----CDSVRHRFLSTLEQLGLES 741 (944)
Q Consensus 675 ~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p-----~~~l~~~~~-~~~-----~~~~~~~~~~~~~~~gi~~ 741 (944)
..+..+..+.|.++|+. -|-..-.+..+.......| .-++.+.+. |.. .-..-..+++.+++.++..
T Consensus 266 ~~~v~~~d~~~~siN~~~pgkd~~l~l~a~~~~~~~i~~~~~~~~hl~~~g~~G~d~~~sen~~~~~el~~lie~~~l~g 345 (495)
T KOG0853|consen 266 YRGVSGIDRFFPSINRFEPGKDQDLALPAFTLLHDSIPEPSISSEHLVVAGSRGYDERDSENVEYLKELLSLIEEYDLLG 345 (495)
T ss_pred eeeecccceEeeeeeecCCCCCceeehhhHHhhhcccCCCCCCceEEEEecCCCccccchhhHHHHHHHHHHHHHhCccC
Confidence 33456656779999954 5666666667776666664 445555542 121 1223467888899999988
Q ss_pred CcEEEccCccCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEec-CCCcccccchhHHHhhcCCcc-cccCCH
Q 002273 742 LRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTM-AGSVHAHNVGVSLLTKVGLKH-LIAKNE 818 (944)
Q Consensus 742 ~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~-~g~~~~~r~~~~~l~~~gl~~-~v~~~~ 818 (944)
+.|.|++... +.+-..++..+.+.+-+... ..|.|++|||++|+|||+. .|.+.-.-+. |... +|..+.
T Consensus 346 ~~v~~~~s~~-~~~~yrl~adt~~v~~qPa~E~FGiv~IEAMa~glPvvAt~~GGP~EiV~~-------~~tG~l~dp~~ 417 (495)
T KOG0853|consen 346 QFVWFLPSTT-RVAKYRLAADTKGVLYQPANEHFGIVPIEAMACGLPVVATNNGGPAEIVVH-------GVTGLLIDPGQ 417 (495)
T ss_pred ceEEEecCCc-hHHHHHHHHhcceEEecCCCCCccceeHHHHhcCCCEEEecCCCceEEEEc-------CCcceeeCCch
Confidence 8999988876 44556677778888888876 9999999999999999864 3443322221 3333 334455
Q ss_pred H---HHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 002273 819 D---EYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 866 (944)
Q Consensus 819 ~---~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 866 (944)
+ ...+..++|.+||+.+.+++...++++.+. |.++.|..++.....
T Consensus 418 e~~~~~a~~~~kl~~~p~l~~~~~~~G~~rV~e~--fs~~~~~~ri~~~~~ 466 (495)
T KOG0853|consen 418 EAVAELADALLKLRRDPELWARMGKNGLKRVKEM--FSWQHYSERIASVLG 466 (495)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHhH
Confidence 5 589999999999999999999999999755 888888777777665
No 290
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.30 E-value=3.5e-06 Score=69.55 Aligned_cols=63 Identities=24% Similarity=0.399 Sum_probs=33.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhh
Q 002273 399 VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 461 (944)
Q Consensus 399 ~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a 461 (944)
.+|...+++++|++++++++..+|+++..+..+|.++..+|++++|.+.|+++++..|++..+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 344555555555555555555555555555555555555555555555555555555554443
No 291
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.29 E-value=2.2e-05 Score=71.90 Aligned_cols=104 Identities=21% Similarity=0.229 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHH
Q 002273 359 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---AEAYNNLG 432 (944)
Q Consensus 359 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~---~~a~~~la 432 (944)
.++.-|...++.|+|++|++.|+.+....|.. ..+.+.++.+|++.+++++|+..+++.++++|++ ..+++..|
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~g 91 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRG 91 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence 34444444444444444444444444443332 2344444444444444444444444444444443 23444444
Q ss_pred HHHHHcCC---------------HHHHHHHHHHHHhhCCCChhhh
Q 002273 433 VLYRDAGS---------------ISLAIDAYEQCLKIDPDSRNAG 462 (944)
Q Consensus 433 ~~~~~~g~---------------~~eA~~~~~~al~l~P~~~~a~ 462 (944)
.++..+.. ..+|...|++.++..|++..+.
T Consensus 92 L~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~ 136 (142)
T PF13512_consen 92 LSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAA 136 (142)
T ss_pred HHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence 44444433 6789999999999999887553
No 292
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.23 E-value=0.00057 Score=66.75 Aligned_cols=185 Identities=19% Similarity=0.191 Sum_probs=123.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----CC-CHHHHHHHHHHHHHcCCHHHH
Q 002273 62 NKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD-----PQ-NACAHTHCGILYKDEGRLVEA 135 (944)
Q Consensus 62 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~-~~~~~~~la~~~~~~g~~~~A 135 (944)
++|++|.++|.++- ..|....+++.|=..|.++-+.. .+ ....|...+.+|. ..+.++|
T Consensus 28 ~k~eeAadl~~~Aa--------------n~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cyk-k~~~~eA 92 (288)
T KOG1586|consen 28 NKYEEAAELYERAA--------------NMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYK-KVDPEEA 92 (288)
T ss_pred cchHHHHHHHHHHH--------------HHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhh-ccChHHH
Confidence 46777777777652 33333444444444444443321 11 2234444455554 4488888
Q ss_pred HHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHH
Q 002273 136 AESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA-GNTQDGIQKYYEALKIDPHY------APAYYNLGVVYSELMQYD 208 (944)
Q Consensus 136 ~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~ 208 (944)
+.++++++++..+.... ..-+.-+..+|.+|... .++++|+.+|+++-+..... ...+...+..-..+++|.
T Consensus 93 v~cL~~aieIyt~~Grf-~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~ 171 (288)
T KOG1586|consen 93 VNCLEKAIEIYTDMGRF-TMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYS 171 (288)
T ss_pred HHHHHHHHHHHHhhhHH-HHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 88888888876654332 22244456677777665 89999999999988764332 234566677778899999
Q ss_pred HHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Q 002273 209 TALGCYEKAALERPMYA-------EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAK 262 (944)
Q Consensus 209 ~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 262 (944)
+|+..|+++....-++. ..++.-|.|++-..+.-.+...+++..+++|......
T Consensus 172 ~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsR 232 (288)
T KOG1586|consen 172 KAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSR 232 (288)
T ss_pred HHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccH
Confidence 99999999887654432 3456678888888999999999999999999876543
No 293
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.22 E-value=0.00045 Score=68.54 Aligned_cols=148 Identities=17% Similarity=0.234 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 002273 306 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN-PHCAEACNNLGVIYKDRDNLDKAVECYQMAL 384 (944)
Q Consensus 306 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 384 (944)
+..++.+++-+ ..+.+.+..++...|+|.-.+..+.+.++.+ |..+.....+|.+.++.|+.+.|..+|++.-
T Consensus 166 ESsv~lW~KRl------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~ve 239 (366)
T KOG2796|consen 166 ESSIRLWRKRL------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVE 239 (366)
T ss_pred hhHHHHHHHHH------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 44455555443 3567888999999999999999999999988 6678889999999999999999999999654
Q ss_pred hhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002273 385 SIK------PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 458 (944)
Q Consensus 385 ~~~------p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~ 458 (944)
+.. .....+..+.+.++.-.+++.+|...+.+++..+|.++.+..+.|.|+.-.|+..+|++..+.+++..|..
T Consensus 240 k~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 240 KVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 432 22345778889999999999999999999999999999999999999999999999999999999999975
Q ss_pred h
Q 002273 459 R 459 (944)
Q Consensus 459 ~ 459 (944)
.
T Consensus 320 ~ 320 (366)
T KOG2796|consen 320 Y 320 (366)
T ss_pred c
Confidence 4
No 294
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.21 E-value=0.0011 Score=65.93 Aligned_cols=232 Identities=14% Similarity=0.111 Sum_probs=145.7
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC------------------H-HHHHHHHHHHHHcCCHHHHHHHHHH
Q 002273 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN------------------A-CAHTHCGILYKDEGRLVEAAESYHK 141 (944)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------------------~-~~~~~la~~~~~~g~~~~A~~~~~~ 141 (944)
+...|...-.++.+....++|...+...-+++..+ | ......|.+....|+..+.+.-+..
T Consensus 68 ~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD~pdl~Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~lgnpqesLdRl~~ 147 (366)
T KOG2796|consen 68 SLQLWTVRLALLVKLRLFQNAEMELEPFGNLDQPDLYYEYYPHVYPGRRGSMVPFSMRILHAELQQYLGNPQESLDRLHK 147 (366)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhhhhccCCCcceeeeeccccCCCCcCccccHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 44566666677777777777776666554443211 1 1223335555566666666555444
Q ss_pred HHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 002273 142 ALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALER 221 (944)
Q Consensus 142 al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 221 (944)
....- ...-.........+..++.+++-+. .+.+.+..++.-.|.|.-.+..+.+.++.+
T Consensus 148 L~~~V--------------~~ii~~~e~~~~~ESsv~lW~KRl~------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~ 207 (366)
T KOG2796|consen 148 LKTVV--------------SKILANLEQGLAEESSIRLWRKRLG------RVMYSMANCLLGMKEYVLSVDAYHSVIKYY 207 (366)
T ss_pred HHHHH--------------HHHHHHHHhccchhhHHHHHHHHHH------HHHHHHHHHHhcchhhhhhHHHHHHHHHhC
Confidence 33211 1111112222233555666655443 466777778888888888888888888877
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhh
Q 002273 222 -PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVK 300 (944)
Q Consensus 222 -p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~ 300 (944)
|..+.....+|.+.++.|+.+.|..+|++.-+....-
T Consensus 208 ~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL------------------------------------------ 245 (366)
T KOG2796|consen 208 PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKL------------------------------------------ 245 (366)
T ss_pred CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh------------------------------------------
Confidence 5577777888888888888888888887654321110
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Q 002273 301 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECY 380 (944)
Q Consensus 301 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 380 (944)
..-....-+..+.+.++...+++.+|...+.+++..+|.++.+.++.|.|+...|+...|++..
T Consensus 246 ----------------~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~ 309 (366)
T KOG2796|consen 246 ----------------DGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQL 309 (366)
T ss_pred ----------------hccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHH
Confidence 0001122345566667777777777777777777777777777777777777777777788777
Q ss_pred HHHHhhCCCC
Q 002273 381 QMALSIKPNF 390 (944)
Q Consensus 381 ~~al~~~p~~ 390 (944)
+.+++..|..
T Consensus 310 e~~~~~~P~~ 319 (366)
T KOG2796|consen 310 EAMVQQDPRH 319 (366)
T ss_pred HHHhccCCcc
Confidence 7777777753
No 295
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=98.20 E-value=7.3e-06 Score=94.32 Aligned_cols=170 Identities=14% Similarity=0.084 Sum_probs=121.5
Q ss_pred CCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCC------------------
Q 002273 679 TNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLE------------------ 740 (944)
Q Consensus 679 ~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~------------------ 740 (944)
+.-.|.++.=.=+.|-....+.++.+++..+|++.|.+.|.+.. ......+++..++.++.
T Consensus 319 ~~~~I~v~idrL~ek~~~~~I~av~~~~~~~p~~~L~~~gy~~~-~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 397 (519)
T TIGR03713 319 YETEIGFWIDGLSDEELQQILQQLLQYILKNPDYELKILTYNND-NDITQLLEDILEQINEEYNQDKNFFSLSEQDENQP 397 (519)
T ss_pred cceEEEEEcCCCChHHHHHHHHHHHHHHhhCCCeEEEEEEecCc-hhHHHHHHHHHHHHHhhhchhhhccccchhhhhhh
Confidence 34445444112278889999999999999999999999876522 23345555555555553
Q ss_pred ----------CCcEEEccCccCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCC
Q 002273 741 ----------SLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGL 810 (944)
Q Consensus 741 ----------~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl 810 (944)
.+||.|.+... ..+....|..+.|++|+....|-.|.+||+..|||+|-.....+ -.-|-
T Consensus 398 ~~~~~~~~~~~~~v~f~gy~~-e~dl~~~~~~arl~id~s~~eg~~~~ieAiS~GiPqInyg~~~~---------V~d~~ 467 (519)
T TIGR03713 398 ILQTDEEQKEKERIAFTTLTN-EEDLISALDKLRLIIDLSKEPDLYTQISGISAGIPQINKVETDY---------VEHNK 467 (519)
T ss_pred cccchhhcccccEEEEEecCC-HHHHHHHHhhheEEEECCCCCChHHHHHHHHcCCCeeecCCcee---------eEcCC
Confidence 17999998754 35899999999999999977553499999999999992211111 12277
Q ss_pred cccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 002273 811 KHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLE 862 (944)
Q Consensus 811 ~~~v~~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e 862 (944)
.+.|..|.++..+.++.+..|+..+.++....-+.+ ..|+.......++
T Consensus 468 NG~li~d~~~l~~al~~~L~~~~~wn~~~~~sy~~~---~~yS~~~i~~kW~ 516 (519)
T TIGR03713 468 NGYIIDDISELLKALDYYLDNLKNWNYSLAYSIKLI---DDYSSENIIERLN 516 (519)
T ss_pred CcEEeCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHH---HHhhHHHHHHHHH
Confidence 778889999999999999999988877777665553 3355555444433
No 296
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.20 E-value=0.00042 Score=67.68 Aligned_cols=141 Identities=14% Similarity=0.174 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHC-CCHHHHHHHHHHHHhhCCCC------H
Q 002273 325 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC------AEACNNLGVIYKDR-DNLDKAVECYQMALSIKPNF------S 391 (944)
Q Consensus 325 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~------~ 391 (944)
.|...+.+|.+ .+.++|+.++++++++..+. +..+..+|.+|... .++++|+.+|+++-+..... -
T Consensus 76 ~YveA~~cykk-~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssAN 154 (288)
T KOG1586|consen 76 TYVEAANCYKK-VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSAN 154 (288)
T ss_pred HHHHHHHHhhc-cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHH
Confidence 34444444443 37777777777777764433 33455788888765 89999999999998775432 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhh
Q 002273 392 QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA-------EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 464 (944)
Q Consensus 392 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~-------~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~ 464 (944)
..+...+..-...++|.+|+..|++.....-++. .-++.-|.|+....+.-.+...+++..+++|...+.+.-
T Consensus 155 KC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREc 234 (288)
T KOG1586|consen 155 KCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSREC 234 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHH
Confidence 3566677777889999999999999887654442 334566778888889999999999999999998877655
Q ss_pred HH
Q 002273 465 RL 466 (944)
Q Consensus 465 ~~ 466 (944)
.+
T Consensus 235 kf 236 (288)
T KOG1586|consen 235 KF 236 (288)
T ss_pred HH
Confidence 43
No 297
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.18 E-value=0.00025 Score=66.68 Aligned_cols=148 Identities=17% Similarity=0.138 Sum_probs=95.3
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCChhHHhHHHHHHHHHHHHHHHcCChH
Q 002273 96 NMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSA-DPSYKPAAECLAIVLTDLGTSLKLAGNTQ 174 (944)
Q Consensus 96 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~lg~~~~~~g~~~ 174 (944)
=+.+.......+.+...|.. .-.+.||..+.+.|++.+|...|++++.- ...+.. ++..+++.....+++.
T Consensus 70 ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a-------~lLglA~Aqfa~~~~A 141 (251)
T COG4700 70 LDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAA-------MLLGLAQAQFAIQEFA 141 (251)
T ss_pred cChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHH-------HHHHHHHHHHhhccHH
Confidence 34444444444444444443 34566777777777777777777777653 222222 3555666666677777
Q ss_pred HHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002273 175 DGIQKYYEALKIDPH--YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 252 (944)
Q Consensus 175 ~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 252 (944)
.|...+++..+.+|. .++....+|..|...|++.+|...|+.++...|+ +.+....+..+.++|+..+|...+....
T Consensus 142 ~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 142 AAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 777777777777664 4566677777777777777777777777777765 5666667777777777776665554443
No 298
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.17 E-value=4.1e-05 Score=67.29 Aligned_cols=97 Identities=23% Similarity=0.349 Sum_probs=74.8
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHH
Q 002273 361 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY----AEAYNNLGVLYR 436 (944)
Q Consensus 361 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~----~~a~~~la~~~~ 436 (944)
-..|..+...|+.+.|++.|.+++.+.|..+.+|++.+..+.-+|+.++|++-+++++++.... ..++...|.+|.
T Consensus 47 El~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 47 ELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 3456666777888888888888888888888888888888888888888888888888875433 356778888888
Q ss_pred HcCCHHHHHHHHHHHHhhCCC
Q 002273 437 DAGSISLAIDAYEQCLKIDPD 457 (944)
Q Consensus 437 ~~g~~~eA~~~~~~al~l~P~ 457 (944)
.+|+-+.|...|+.+-++-..
T Consensus 127 l~g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLGSK 147 (175)
T ss_pred HhCchHHHHHhHHHHHHhCCH
Confidence 888888888888888777554
No 299
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.14 E-value=2.8e-05 Score=84.45 Aligned_cols=74 Identities=28% Similarity=0.315 Sum_probs=66.9
Q ss_pred cccCCCCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 002273 38 AVGSTLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEA---HIGKGICLQMQNMGRLAFDSFSEAVKL 111 (944)
Q Consensus 38 ~~~~~~~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~la~~~~~~g~~~~A~~~~~~al~~ 111 (944)
..+...+|..+..++.+|..|+..|+|++|+..|+++++.+|++.++ |+++|.+|..+|++++|+.++++++++
T Consensus 65 ~~~~~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 65 KDGSEADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44456788899999999999999999999999999999999998854 999999999999999999999999987
No 300
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.14 E-value=0.0035 Score=70.36 Aligned_cols=47 Identities=19% Similarity=0.037 Sum_probs=33.6
Q ss_pred HhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 002273 59 RSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFS 106 (944)
Q Consensus 59 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 106 (944)
...|+|+.|...++. ++..|+....|..++...+..|+.--|..+|.
T Consensus 455 id~~df~ra~afles-~~~~~da~amw~~laelale~~nl~iaercfa 501 (1636)
T KOG3616|consen 455 IDDGDFDRATAFLES-LEMGPDAEAMWIRLAELALEAGNLFIAERCFA 501 (1636)
T ss_pred cccCchHHHHHHHHh-hccCccHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 567889988877765 56677777777777777777776666655554
No 301
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.12 E-value=0.0024 Score=71.63 Aligned_cols=318 Identities=15% Similarity=0.129 Sum_probs=172.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHH------Hhc----CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHH
Q 002273 85 HIGKGICLQMQNMGRLAFDSFSEA------VKL----DPQNA-CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAA 153 (944)
Q Consensus 85 ~~~la~~~~~~g~~~~A~~~~~~a------l~~----~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 153 (944)
|-.-|..+.+..++++|+++|++. +++ .|... ..-...|.-+...|+++.|+..|-++-.
T Consensus 664 ydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~--------- 734 (1636)
T KOG3616|consen 664 YDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC--------- 734 (1636)
T ss_pred HHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------
Confidence 334455555666666666666542 222 12211 1222335556667777777777755421
Q ss_pred hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002273 154 ECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGV 233 (944)
Q Consensus 154 ~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 233 (944)
+..-........++.+|+..++...... .....|-.++.-|...|+|+.|.++|.++- ....-..
T Consensus 735 ------~~kaieaai~akew~kai~ildniqdqk-~~s~yy~~iadhyan~~dfe~ae~lf~e~~--------~~~dai~ 799 (1636)
T KOG3616|consen 735 ------LIKAIEAAIGAKEWKKAISILDNIQDQK-TASGYYGEIADHYANKGDFEIAEELFTEAD--------LFKDAID 799 (1636)
T ss_pred ------HHHHHHHHhhhhhhhhhHhHHHHhhhhc-cccccchHHHHHhccchhHHHHHHHHHhcc--------hhHHHHH
Confidence 1222223334567777777776543322 123345567888888999999988888752 2233445
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHH
Q 002273 234 IYKNRGDLESAIACYERCLAVSPNFE-IAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYY 312 (944)
Q Consensus 234 ~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~ 312 (944)
.|-+.|++++|.+.-+++.. |... ..+...+.-+-..|+..+++. +|...|..++|+..|
T Consensus 800 my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeq-----------------lyiti~~p~~aiqmy 860 (1636)
T KOG3616|consen 800 MYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQ-----------------LYITIGEPDKAIQMY 860 (1636)
T ss_pred HHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhh-----------------eeEEccCchHHHHHH
Confidence 67788888888877766532 3322 233334444444444322221 133334444555544
Q ss_pred HHH------H----HhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q 002273 313 KKA------L----YYNWHY-ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 381 (944)
Q Consensus 313 ~~a------l----~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 381 (944)
++. + +..++. .+....+|.-+...|+...|...|-++-.. ..-...|...+-+++|...-+
T Consensus 861 dk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~--------kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 861 DKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDF--------KAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred HhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhH--------HHHHHHhhhhhhHHHHHHHHh
Confidence 432 1 123332 357788888999999999998888776432 122233334444444433221
Q ss_pred HHHhhCCCCHH--HHHH---------HHHHHHHcCCHHHHHH-------------HHHHHHHhCCCCHHHHHHHHHHHHH
Q 002273 382 MALSIKPNFSQ--SLNN---------LGVVYTVQGKMDAAAE-------------MIEKAIAANPTYAEAYNNLGVLYRD 437 (944)
Q Consensus 382 ~al~~~p~~~~--~~~~---------la~~~~~~g~~~~A~~-------------~l~~al~~~p~~~~a~~~la~~~~~ 437 (944)
.....+.. +.+. -..++.+.|-.++|+. .-+-+. ...-++++..++..+..
T Consensus 933 ---tegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~--k~k~~~vhlk~a~~led 1007 (1636)
T KOG3616|consen 933 ---TEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAA--KDKMGEVHLKLAMFLED 1007 (1636)
T ss_pred ---ccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhh--hccCccchhHHhhhhhh
Confidence 11111111 0000 1122333444444443 222222 23346788999999999
Q ss_pred cCCHHHHHHHHHHHHhhCCCC
Q 002273 438 AGSISLAIDAYEQCLKIDPDS 458 (944)
Q Consensus 438 ~g~~~eA~~~~~~al~l~P~~ 458 (944)
.|++++|-+.|-.+++++.-+
T Consensus 1008 egk~edaskhyveaiklntyn 1028 (1636)
T KOG3616|consen 1008 EGKFEDASKHYVEAIKLNTYN 1028 (1636)
T ss_pred ccchhhhhHhhHHHhhccccc
Confidence 999999999999999998655
No 302
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.09 E-value=4.1e-06 Score=70.20 Aligned_cols=64 Identities=36% Similarity=0.540 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---C----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002273 391 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAA---N----PTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 454 (944)
Q Consensus 391 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~---~----p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l 454 (944)
..++.++|.+|..+|++++|+++|++++++ . |....++.++|.++..+|++++|++++++++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 345555666666666666666666666544 1 112445666677777777777777777766654
No 303
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=98.06 E-value=1.7e-05 Score=89.68 Aligned_cols=110 Identities=14% Similarity=0.038 Sum_probs=73.8
Q ss_pred HHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCC----cccc--------cCCHHHH
Q 002273 755 DHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGL----KHLI--------AKNEDEY 821 (944)
Q Consensus 755 ~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl----~~~v--------~~~~~~y 821 (944)
++-..++.||+++=|+-| +.|.|.+|||+||+||||-....|. ..+-..+|- .-+| ..+.++.
T Consensus 467 ~y~E~~~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~----~~v~E~v~~~~~~gi~V~~r~~~~~~e~v~~L 542 (590)
T cd03793 467 DYEEFVRGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFG----CFMEEHIEDPESYGIYIVDRRFKSPDESVQQL 542 (590)
T ss_pred chHHHhhhceEEEeccccCCCCcHHHHHHHcCCCEEEccCcchh----hhhHHHhccCCCceEEEecCCccchHHHHHHH
Confidence 466678889999988877 6699999999999999994333221 011111121 1122 3467777
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 002273 822 VQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 870 (944)
Q Consensus 822 ~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 870 (944)
.+...++++. +.++.+.++-+.. ..+..|+++.++..+.+||..+.+
T Consensus 543 a~~m~~~~~~-~~r~~~~~r~~~~-r~s~~f~W~~~~~~Y~~A~~~Al~ 589 (590)
T cd03793 543 TQYMYEFCQL-SRRQRIIQRNRTE-RLSDLLDWRNLGRYYRKARQLALS 589 (590)
T ss_pred HHHHHHHhCC-cHHHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHHHHhh
Confidence 7777777754 4555555544321 125779999999999999988765
No 304
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.04 E-value=0.00018 Score=79.38 Aligned_cols=174 Identities=16% Similarity=0.130 Sum_probs=123.9
Q ss_pred eEEEecCC--CCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhc
Q 002273 683 ITFGSFNN--LAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY 760 (944)
Q Consensus 683 ~~f~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~ 760 (944)
+.+.++++ ..|..+.++++...+....|+..+++.|.+... ...+...+...+. .+.|.|.|..+ ..+....+
T Consensus 200 ~~i~~~g~~~~~k~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~-~~~v~~~g~~~-~~~~~~~~ 274 (381)
T COG0438 200 FVVLYVGRLDPEKGLDLLIEAAAKLKKRGPDIKLVIVGDGPER---REELEKLAKKLGL-EDNVKFLGYVP-DEELAELL 274 (381)
T ss_pred eEEEEeeccChhcCHHHHHHHHHHhhhhcCCeEEEEEcCCCcc---HHHHHHHHHHhCC-CCcEEEecccC-HHHHHHHH
Confidence 34444443 368888999999998888887788888765322 3445556666676 57899988876 45667778
Q ss_pred ccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccch--hHHHhhcCCcccccC-CHHHHHHHHHHHhcCHHHHH
Q 002273 761 SLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVG--VSLLTKVGLKHLIAK-NEDEYVQLALQLASDVTALA 836 (944)
Q Consensus 761 ~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~--~~~l~~~gl~~~v~~-~~~~y~~~a~~l~~d~~~~~ 836 (944)
..+|+++-|..+ +.|.+++|||++|+|||+ ++++ ..++..-+..-++.. +.++.......+..+.+.++
T Consensus 275 ~~~~~~v~ps~~e~~~~~~~Ea~a~g~pvi~-------~~~~~~~e~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~ 347 (381)
T COG0438 275 ASADVFVLPSLSEGFGLVLLEAMAAGTPVIA-------SDVGGIPEVVEDGETGLLVPPGDVEELADALEQLLEDPELRE 347 (381)
T ss_pred HhCCEEEeccccccchHHHHHHHhcCCcEEE-------CCCCChHHHhcCCCceEecCCCCHHHHHHHHHHHhcCHHHHH
Confidence 889999999876 778889999999999998 4444 112222211113333 58999999999999986677
Q ss_pred HHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 002273 837 NLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 870 (944)
Q Consensus 837 ~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 870 (944)
.+....++... ..|++..++..+++.|.....
T Consensus 348 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 379 (381)
T COG0438 348 ELGEAARERVE--EEFSWERIAEQLLELYEELLA 379 (381)
T ss_pred HHHHHHHHHHH--HhcCHHHHHHHHHHHHHHHHh
Confidence 77764545443 458999999988888876543
No 305
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.03 E-value=8.4e-06 Score=68.28 Aligned_cols=73 Identities=27% Similarity=0.378 Sum_probs=57.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 002273 114 QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI 186 (944)
Q Consensus 114 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (944)
+-..++..+|.+|..+|++++|+.+|++++++.....+.....+.++.++|.++...|++++|++++++++++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3456889999999999999999999999998743333344456778888888888888888888888888764
No 306
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.02 E-value=3.9e-05 Score=72.41 Aligned_cols=100 Identities=21% Similarity=0.266 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002273 339 FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL---DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIE 415 (944)
Q Consensus 339 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~ 415 (944)
++.|.+.++.....+|.+++.+++.|..+..+.++ .++.+ .+++|+.-|+
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~---------------------------miedAisK~e 59 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKK---------------------------MIEDAISKFE 59 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHH---------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHH---------------------------HHHHHHHHHH
Confidence 56667777777777777777777777666554322 11111 1233344444
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhhCCCChhhhhhH
Q 002273 416 KAIAANPTYAEAYNNLGVLYRDAG-----------SISLAIDAYEQCLKIDPDSRNAGQNR 465 (944)
Q Consensus 416 ~al~~~p~~~~a~~~la~~~~~~g-----------~~~eA~~~~~~al~l~P~~~~a~~~~ 465 (944)
+++.++|+..++++.+|.+|...+ .+++|.++|++|...+|++...+..+
T Consensus 60 eAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksL 120 (186)
T PF06552_consen 60 EALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSL 120 (186)
T ss_dssp HHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred HHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 444455555555555554444333 37789999999999999987555443
No 307
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.02 E-value=0.00025 Score=62.45 Aligned_cols=105 Identities=22% Similarity=0.233 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHH
Q 002273 155 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY----AEAYCN 230 (944)
Q Consensus 155 ~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~ 230 (944)
.....+...|..+...|+.+.|++.|.+++.+-|..+.+|.+.+..+.-+|+.++|++.+++++++.... -.++..
T Consensus 41 e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQ 120 (175)
T KOG4555|consen 41 KASRELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQ 120 (175)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 3344566678888899999999999999999999999999999999999999999999999999986543 347888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 002273 231 MGVIYKNRGDLESAIACYERCLAVSPNFE 259 (944)
Q Consensus 231 la~~~~~~g~~~~A~~~~~~al~~~p~~~ 259 (944)
.|.+|..+|+-+.|..-|+.+-++...+.
T Consensus 121 Rg~lyRl~g~dd~AR~DFe~AA~LGS~FA 149 (175)
T KOG4555|consen 121 RGLLYRLLGNDDAARADFEAAAQLGSKFA 149 (175)
T ss_pred HHHHHHHhCchHHHHHhHHHHHHhCCHHH
Confidence 99999999999999999999988866544
No 308
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.02 E-value=0.0017 Score=63.93 Aligned_cols=30 Identities=13% Similarity=0.044 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 002273 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKI 186 (944)
Q Consensus 157 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (944)
+..|..-+..+...+++++|..++.++.+-
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~ 60 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKG 60 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 334445555566666666666666666644
No 309
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=98.00 E-value=0.0023 Score=73.19 Aligned_cols=55 Identities=22% Similarity=0.123 Sum_probs=33.8
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-------HHhCCHHHHHHHHHHHHhc
Q 002273 54 YANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICL-------QMQNMGRLAFDSFSEAVKL 111 (944)
Q Consensus 54 ~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-------~~~g~~~~A~~~~~~al~~ 111 (944)
.|..++-++++++|.++++.. .+.++.-....|.+. +...+.++|.+.+.++.+.
T Consensus 2 ~a~~lflnn~~~eAe~~l~~~---~~~s~~h~lg~~~i~fl~A~ltfe~~~~~~A~~~l~~a~~~ 63 (468)
T PF10300_consen 2 KAIDLFLNNRFKEAEELLSPR---ADESPYHALGYGVIAFLKAMLTFEPEDIEEALEALKEAESL 63 (468)
T ss_pred hHHHHHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 366788899999999999854 223332222333322 3445677777777776643
No 310
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.98 E-value=6.1e-05 Score=71.15 Aligned_cols=93 Identities=26% Similarity=0.319 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHH---HcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--
Q 002273 132 LVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLK---LAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ-- 206 (944)
Q Consensus 132 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-- 206 (944)
++.|.+.++.....+|.+.++....+.++..++.... ...-+++|+.-|++++.++|+..++++.+|.+|...+.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 3445555555555555555554444444444443311 22356788899999999999999999999999987653
Q ss_pred ---------HHHHHHHHHHHHHhCCCC
Q 002273 207 ---------YDTALGCYEKAALERPMY 224 (944)
Q Consensus 207 ---------~~~A~~~~~~al~~~p~~ 224 (944)
|++|..+|+++...+|++
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~~~P~n 113 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVDEDPNN 113 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 444555555555555554
No 311
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.93 E-value=0.058 Score=60.69 Aligned_cols=124 Identities=11% Similarity=-0.026 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHH
Q 002273 323 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI-KPNFSQSLNNLGVVY 401 (944)
Q Consensus 323 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~ 401 (944)
...|......-...|+++...-.|++++--.....+.|...+......|+.+-|...+..+.++ .|..+.+...-+.+-
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~ 376 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFE 376 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHH
Confidence 3467777777888899999999999998887788889999999999999999999888888877 466677888888888
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002273 402 TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAID 446 (944)
Q Consensus 402 ~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~ 446 (944)
...|++..|...+++..+..|+..++-........++|+.+.+..
T Consensus 377 e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~ 421 (577)
T KOG1258|consen 377 ESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANY 421 (577)
T ss_pred HhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH
Confidence 889999999999999998889988888888888888999888884
No 312
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.93 E-value=0.031 Score=65.62 Aligned_cols=197 Identities=13% Similarity=0.081 Sum_probs=129.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002273 61 RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYH 140 (944)
Q Consensus 61 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 140 (944)
-+..+.|.++.+++ +.+..|..+|.+..+.|...+|++.|-++ +++..|.....+..+.|.|++-+.++.
T Consensus 1088 i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~ 1157 (1666)
T KOG0985|consen 1088 IGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLL 1157 (1666)
T ss_pred hhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 35666666665554 45667777777777777777777776543 455566666666777777777777766
Q ss_pred HHHHcCCCC-hhHHhHHHHH-------------------HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 002273 141 KALSADPSY-KPAAECLAIV-------------------LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVV 200 (944)
Q Consensus 141 ~al~~~p~~-~~~~~~la~~-------------------~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 200 (944)
.+-+..... .+.....|.+ ....|.-++..+.|+.|.-+|.. ..-|..|+..
T Consensus 1158 MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~T 1229 (1666)
T KOG0985|consen 1158 MARKKVREPYIDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLAST 1229 (1666)
T ss_pred HHHHhhcCccchHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHH
Confidence 665432221 1110000100 23356666777777777776653 3456778888
Q ss_pred HHHcCCHHHHHHHHHHHHHhC-----------C--------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 002273 201 YSELMQYDTALGCYEKAALER-----------P--------------MYAEAYCNMGVIYKNRGDLESAIACYERCLAVS 255 (944)
Q Consensus 201 ~~~~g~~~~A~~~~~~al~~~-----------p--------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 255 (944)
+..+|+|..|....+++-... . -+++-+-.+...|...|-+++-+..++.++.+.
T Consensus 1230 LV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE 1309 (1666)
T KOG0985|consen 1230 LVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE 1309 (1666)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh
Confidence 888999999988888763311 0 034456677888999999999999999999888
Q ss_pred CCcHHHHHHHHHHHHHhhhh
Q 002273 256 PNFEIAKNNMAIALTDLGTK 275 (944)
Q Consensus 256 p~~~~~~~~la~~l~~~~~~ 275 (944)
..+...+..++.+|.+..-.
T Consensus 1310 RAHMgmfTELaiLYskykp~ 1329 (1666)
T KOG0985|consen 1310 RAHMGMFTELAILYSKYKPE 1329 (1666)
T ss_pred HHHHHHHHHHHHHHHhcCHH
Confidence 87777788888888765443
No 313
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.92 E-value=0.003 Score=72.34 Aligned_cols=161 Identities=16% Similarity=0.093 Sum_probs=117.0
Q ss_pred hhHHHhhhcCCHHHHHHHHHHHHHhCCCC-HHH------HHHHHHHHH----HcCChHHHHHHHHHHHhhCCCCHHHHHH
Q 002273 294 PFFELVKLEGDINQGVAYYKKALYYNWHY-ADA------MYNLGVAYG----EMLKFDMAIVFYELAFHFNPHCAEACNN 362 (944)
Q Consensus 294 ~~~~l~~~~~~~~~A~~~~~~al~~~p~~-~~~------~~~la~~~~----~~g~~~~A~~~~~~al~~~p~~~~~~~~ 362 (944)
.+.++..-.||-+.+++.+.++.+...-. +-+ |+.....+. .....+.|.++++...+..|+..-.++.
T Consensus 193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~ 272 (468)
T PF10300_consen 193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFF 272 (468)
T ss_pred HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 34455666789999999999887632211 111 111111111 2446788999999999999999999999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH
Q 002273 363 LGVIYKDRDNLDKAVECYQMALSIKPNF----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY-AEAYNNLGVLYRD 437 (944)
Q Consensus 363 la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~-~~a~~~la~~~~~ 437 (944)
.|+++...|+.++|++.|++++...... .-.++.+++++..+.+|++|.+++.+..+.+.-. .-..+..|.++..
T Consensus 273 ~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~ 352 (468)
T PF10300_consen 273 EGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLM 352 (468)
T ss_pred HHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 9999999999999999999888544332 2367889999999999999999999998876543 3345567888888
Q ss_pred cCCH-------HHHHHHHHHHHhh
Q 002273 438 AGSI-------SLAIDAYEQCLKI 454 (944)
Q Consensus 438 ~g~~-------~eA~~~~~~al~l 454 (944)
.|+. ++|.+.|+++-.+
T Consensus 353 l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 353 LGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred hccchhhhhhHHHHHHHHHHHHHH
Confidence 9988 6667766666443
No 314
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.91 E-value=0.0017 Score=70.89 Aligned_cols=208 Identities=18% Similarity=0.059 Sum_probs=135.4
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC------------------
Q 002273 53 SYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ------------------ 114 (944)
Q Consensus 53 ~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------------------ 114 (944)
.......+..+.++-++..+++++.+|+.+.+|..++.-. .....+|.++|+++++....
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~ 250 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAW 250 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhh
Confidence 3444557789999999999999999999999999887642 23456677777776653110
Q ss_pred ---C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-
Q 002273 115 ---N----ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI- 186 (944)
Q Consensus 115 ---~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~- 186 (944)
+ ..+...+|.+..+.|+.++|++.++..++..|.... -.+..++..++...+.+.++...+.+.-+.
T Consensus 251 ~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~-----l~IrenLie~LLelq~Yad~q~lL~kYdDi~ 325 (539)
T PF04184_consen 251 HRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDN-----LNIRENLIEALLELQAYADVQALLAKYDDIS 325 (539)
T ss_pred hccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccch-----hhHHHHHHHHHHhcCCHHHHHHHHHHhcccc
Confidence 0 234566888888888888888888888887775322 224667777788888888888888775433
Q ss_pred CCCCHHHHHHHHHHHHH-cCC---------------HHHHHHHHHHHHHhCCCCHHHHHHHH------HHHHHcCCHHHH
Q 002273 187 DPHYAPAYYNLGVVYSE-LMQ---------------YDTALGCYEKAALERPMYAEAYCNMG------VIYKNRGDLESA 244 (944)
Q Consensus 187 ~p~~~~~~~~la~~~~~-~g~---------------~~~A~~~~~~al~~~p~~~~~~~~la------~~~~~~g~~~~A 244 (944)
-|+.+...+..+.+-.+ .++ -..|++.+.++++.+|..+..+..+- .-+.+.|+ .||
T Consensus 326 lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLLe~K~LilPPehilkrGD-SEA 404 (539)
T PF04184_consen 326 LPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLLEMKSLILPPEHILKRGD-SEA 404 (539)
T ss_pred CCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhhccCCCCCChHHhcCCCc-HHH
Confidence 35556666655554332 111 13466788888888887766554332 12344554 677
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHH
Q 002273 245 IACYERCLAVSPNFEIAKNNMAIA 268 (944)
Q Consensus 245 ~~~~~~al~~~p~~~~~~~~la~~ 268 (944)
+.+---.+..-.+...+...+...
T Consensus 405 iaYAf~hL~hWk~veGAL~lL~~t 428 (539)
T PF04184_consen 405 IAYAFFHLQHWKRVEGALNLLHCT 428 (539)
T ss_pred HHHHHHHHHHHhcCHhHHHHHHHH
Confidence 776666655544444444444333
No 315
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.91 E-value=0.0014 Score=64.50 Aligned_cols=134 Identities=22% Similarity=0.178 Sum_probs=82.0
Q ss_pred HHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHc
Q 002273 331 VAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF------SQSLNNLGVVYTVQ 404 (944)
Q Consensus 331 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~ 404 (944)
..|.+.|..+.|-..++++-+. .+..+.++|+++|++++.+-... .+.+-..++++.+.
T Consensus 99 ~lY~E~GspdtAAmaleKAak~---------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl 163 (308)
T KOG1585|consen 99 ELYVECGSPDTAAMALEKAAKA---------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRL 163 (308)
T ss_pred HHHHHhCCcchHHHHHHHHHHH---------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhh
Confidence 4556666666666666555433 23356677777777776653222 23555667778888
Q ss_pred CCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCChhhhhhHHHHhhhccC
Q 002273 405 GKMDAAAEMIEKAIAA------NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI----DPDSRNAGQNRLLAMNYINE 474 (944)
Q Consensus 405 g~~~~A~~~l~~al~~------~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l----~P~~~~a~~~~~~~~~~~~~ 474 (944)
.++++|-..+.+-... .++....+.....+|.-..+|..|..+|+..-++ .|++..+..|++- ...+
T Consensus 164 ~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~---ayd~ 240 (308)
T KOG1585|consen 164 EKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLT---AYDE 240 (308)
T ss_pred HHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHH---Hhcc
Confidence 8888877776665432 3444555666666777777888888888887665 3455555555433 3456
Q ss_pred CChHHHHH
Q 002273 475 GHDDKLFE 482 (944)
Q Consensus 475 ~~~~~~~~ 482 (944)
|+.++.-.
T Consensus 241 gD~E~~~k 248 (308)
T KOG1585|consen 241 GDIEEIKK 248 (308)
T ss_pred CCHHHHHH
Confidence 66665443
No 316
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.91 E-value=0.11 Score=62.00 Aligned_cols=414 Identities=15% Similarity=0.073 Sum_probs=235.7
Q ss_pred CChHHHHHHHHHHH-hCCCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC---C
Q 002273 46 FEGKDALSYANILR-SRNKFVDALALYEIVLEKDSG--N----VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ---N 115 (944)
Q Consensus 46 ~~~~~~~~~A~~~~-~~g~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~ 115 (944)
.++...+++|.+++ ...++++|..++++++..... . ..+.+.++.++.+.+... |...+++.++.... .
T Consensus 57 ~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~ 135 (608)
T PF10345_consen 57 QEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHS 135 (608)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCch
Confidence 36778899999998 678999999999999876533 2 234556788888888777 99999999886443 2
Q ss_pred H-HHHHHH--HHHHHHcCCHHHHHHHHHHHHHcCC--CChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC---
Q 002273 116 A-CAHTHC--GILYKDEGRLVEAAESYHKALSADP--SYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID--- 187 (944)
Q Consensus 116 ~-~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--- 187 (944)
. ...+.+ ...+...+++..|++.++....... .+... ...+....+.+....+..+++++..+++....
T Consensus 136 ~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~---~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~ 212 (608)
T PF10345_consen 136 AWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV---FVLASLSEALLHLRRGSPDDVLELLQRAIAQARSL 212 (608)
T ss_pred hHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH---HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhc
Confidence 2 112222 2333334799999999999888753 33322 23334445566677787888888888774431
Q ss_pred ---CC----CHHHHHHHHH--HHHHcCCHHHHHHHHHHHH---H---hCC---C---C----------------------
Q 002273 188 ---PH----YAPAYYNLGV--VYSELMQYDTALGCYEKAA---L---ERP---M---Y---------------------- 224 (944)
Q Consensus 188 ---p~----~~~~~~~la~--~~~~~g~~~~A~~~~~~al---~---~~p---~---~---------------------- 224 (944)
++ ...++..+-. ++...|+++.+...+++.- + ..+ . +
T Consensus 213 q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~ 292 (608)
T PF10345_consen 213 QLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFS 292 (608)
T ss_pred ccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEe
Confidence 11 2334444333 3456677666666555442 2 111 0 0
Q ss_pred --------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-----------------HHHHHHHHHHHHhhhhhhhh
Q 002273 225 --------AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE-----------------IAKNNMAIALTDLGTKTYGR 279 (944)
Q Consensus 225 --------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~l~~~~~~~~~~ 279 (944)
.-.+..-|......+..++|.++++++++.-.+.. ..+......+...
T Consensus 293 wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~------- 365 (608)
T PF10345_consen 293 WLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLF------- 365 (608)
T ss_pred ecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHH-------
Confidence 01233345566667777788888888876421111 0000000000000
Q ss_pred HHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhC---CC------CHHHHHHHHHHHHHcCChHHHHHHHH---
Q 002273 280 ALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYN---WH------YADAMYNLGVAYGEMLKFDMAIVFYE--- 347 (944)
Q Consensus 280 a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~---p~------~~~~~~~la~~~~~~g~~~~A~~~~~--- 347 (944)
...-.....+++.++....+.+.... |. .+..++..|..+...|+.+.|...|.
T Consensus 366 --------------y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~ 431 (608)
T PF10345_consen 366 --------------YQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPR 431 (608)
T ss_pred --------------HHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhH
Confidence 00112345678888888887776542 22 36788999999999999999999998
Q ss_pred -----HHHhhCCCC---HHHHHHHHHHHHHCCCHHH----HHHHHHHHHhhCCCCHHHHHHHHH-----HHH--HcCCHH
Q 002273 348 -----LAFHFNPHC---AEACNNLGVIYKDRDNLDK----AVECYQMALSIKPNFSQSLNNLGV-----VYT--VQGKMD 408 (944)
Q Consensus 348 -----~al~~~p~~---~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~p~~~~~~~~la~-----~~~--~~g~~~ 408 (944)
.+....+.+ .-+..++..++...+.-.. +.+.+++.-....+.+..++..+. .+. ..-...
T Consensus 432 ~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n 511 (608)
T PF10345_consen 432 FLLCEAANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSN 511 (608)
T ss_pred HhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccH
Confidence 333333333 2344556666665554333 334443322221122222222222 221 122334
Q ss_pred HHHHHHHHHHHhC-CC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---hhhhhhH----HHHhhhccC
Q 002273 409 AAAEMIEKAIAAN-PT--Y----AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS---RNAGQNR----LLAMNYINE 474 (944)
Q Consensus 409 ~A~~~l~~al~~~-p~--~----~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~---~~a~~~~----~~~~~~~~~ 474 (944)
++...+.++++.. .. + .-++..++..+. .|+..+..+...++....... ....+.. ++...+-..
T Consensus 512 e~k~~l~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~ 590 (608)
T PF10345_consen 512 EAKRHLQEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQ 590 (608)
T ss_pred HHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHc
Confidence 7777777777654 11 1 234555666666 788888777777776654443 4433321 222335566
Q ss_pred CChHHHHHHHH
Q 002273 475 GHDDKLFEAHR 485 (944)
Q Consensus 475 ~~~~~~~~~~~ 485 (944)
|+.+++-+...
T Consensus 591 G~~~ka~~~~~ 601 (608)
T PF10345_consen 591 GDRDKAEEARQ 601 (608)
T ss_pred CcHHHHHHHHH
Confidence 77776554433
No 317
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=3.6e-05 Score=75.17 Aligned_cols=100 Identities=16% Similarity=0.125 Sum_probs=95.2
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (944)
....+-..|+.++...+|..|+..|.+++..+|..+..+.+.+.|+++..+++.+.....++++++|+....++.+|...
T Consensus 9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~ 88 (284)
T KOG4642|consen 9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWL 88 (284)
T ss_pred HHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHH
Confidence 56778888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcC
Q 002273 127 KDEGRLVEAAESYHKALSAD 146 (944)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~ 146 (944)
.....+++|+..++++..+.
T Consensus 89 l~s~~~~eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 89 LQSKGYDEAIKVLQRAYSLL 108 (284)
T ss_pred HhhccccHHHHHHHHHHHHH
Confidence 99999999999999997653
No 318
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.86 E-value=0.12 Score=61.76 Aligned_cols=316 Identities=14% Similarity=0.023 Sum_probs=188.9
Q ss_pred HHHHHHHHHHHHhcCCC----CHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCC
Q 002273 98 GRLAFDSFSEAVKLDPQ----NACAHTHCGILYK-DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN 172 (944)
Q Consensus 98 ~~~A~~~~~~al~~~p~----~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~ 172 (944)
...|+.+++-+++..+- .+.+++.+|.+++ ...++++|..++++++.+...+ ......-.+...++.++.+.+.
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~-~~~d~k~~~~~ll~~i~~~~~~ 115 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERH-RLTDLKFRCQFLLARIYFKTNP 115 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHHHhcCH
Confidence 35678888887752221 3467888998887 7899999999999998887552 2222223334455777877777
Q ss_pred hHHHHHHHHHHHhhCCC---C-HHHHHHH--HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHH----HHHHHHHHHHcCC
Q 002273 173 TQDGIQKYYEALKIDPH---Y-APAYYNL--GVVYSELMQYDTALGCYEKAALER--PMYAEA----YCNMGVIYKNRGD 240 (944)
Q Consensus 173 ~~~A~~~~~~al~~~p~---~-~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~----~~~la~~~~~~g~ 240 (944)
.. |+..+++.++.... . ....+.+ ...+...+++..|++.++...... ..++.+ ....+.++...+.
T Consensus 116 ~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~ 194 (608)
T PF10345_consen 116 KA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGS 194 (608)
T ss_pred HH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCC
Confidence 76 99999999887444 1 2222222 223333479999999999998765 344432 2334566777788
Q ss_pred HHHHHHHHHHHHHhCCC----------cHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHH
Q 002273 241 LESAIACYERCLAVSPN----------FEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVA 310 (944)
Q Consensus 241 ~~~A~~~~~~al~~~p~----------~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~ 310 (944)
.+++++.++++...... ...++..+..+...+... +++.+..
T Consensus 195 ~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~----------------------------~~~~~~~ 246 (608)
T PF10345_consen 195 PDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQG----------------------------DVKNSKQ 246 (608)
T ss_pred chhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcC----------------------------CHHHHHH
Confidence 88888888877443221 122333333333322221 1111111
Q ss_pred HH---HHHHHh---CC---------------------------------C---CHHHHHHHHHHHHHcCChHHHHHHHHH
Q 002273 311 YY---KKALYY---NW---------------------------------H---YADAMYNLGVAYGEMLKFDMAIVFYEL 348 (944)
Q Consensus 311 ~~---~~al~~---~p---------------------------------~---~~~~~~~la~~~~~~g~~~~A~~~~~~ 348 (944)
.+ ++.++. .+ . ..-+|..-|......+..++|.+++++
T Consensus 247 ~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k 326 (608)
T PF10345_consen 247 KLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEK 326 (608)
T ss_pred HHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHH
Confidence 11 111100 00 0 011233445566666777788888877
Q ss_pred HHhhC-------CCC-------------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---CC------CHHH
Q 002273 349 AFHFN-------PHC-------------------AEACNNLGVIYKDRDNLDKAVECYQMALSIK---PN------FSQS 393 (944)
Q Consensus 349 al~~~-------p~~-------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~------~~~~ 393 (944)
+++.- +.. ....+.++.+..-.+++.+|....+.+.+.. |. .+..
T Consensus 327 ~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~ 406 (608)
T PF10345_consen 327 ALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLL 406 (608)
T ss_pred HHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHH
Confidence 77541 110 1234455666677899999998888777653 22 3667
Q ss_pred HHHHHHHHHHcCCHHHHHHHHH--------HHHHhCCCC---HHHHHHHHHHHHHcCCHHH
Q 002273 394 LNNLGVVYTVQGKMDAAAEMIE--------KAIAANPTY---AEAYNNLGVLYRDAGSISL 443 (944)
Q Consensus 394 ~~~la~~~~~~g~~~~A~~~l~--------~al~~~p~~---~~a~~~la~~~~~~g~~~e 443 (944)
++..|..+...|+.+.|+.+|. .+....+.. .-+..++..++...+....
T Consensus 407 ~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~LNl~~I~~~~~~~~~ 467 (608)
T PF10345_consen 407 HYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAALNLAIILQYESSRDD 467 (608)
T ss_pred HHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHHHHHHHhHhhcccch
Confidence 8888999999999999999998 333333332 2345667777776665443
No 319
>PLN02670 transferase, transferring glycosyl groups
Probab=97.84 E-value=0.00035 Score=79.38 Aligned_cols=172 Identities=12% Similarity=0.059 Sum_probs=111.6
Q ss_pred CCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCC-----HHHHHHHHHHHHHcCCCCCcEEEccCccCcHH
Q 002273 681 GFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCC-----DSVRHRFLSTLEQLGLESLRVDLLPLILLNHD 755 (944)
Q Consensus 681 ~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~-----~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~ 755 (944)
..|+|-||++...++++-++..+.-|...|...||....+... +...+.+.++....| +++.++.| +.+
T Consensus 278 ~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~~~~~~lp~~f~~~~~~rG-----~vv~~W~P-Q~~ 351 (472)
T PLN02670 278 NSVVYVALGTEASLRREEVTELALGLEKSETPFFWVLRNEPGTTQNALEMLPDGFEERVKGRG-----MIHVGWVP-QVK 351 (472)
T ss_pred CceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCcccccchhhcCChHHHHhccCCC-----eEEeCcCC-HHH
Confidence 4588999999999999999999999999999999987643111 112234444443333 56678887 555
Q ss_pred HHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecC--CCcccccchhHHHhhcCCccccc-------CCHHHHHHHHH
Q 002273 756 HMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVHAHNVGVSLLTKVGLKHLIA-------KNEDEYVQLAL 826 (944)
Q Consensus 756 ~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~--g~~~~~r~~~~~l~~~gl~~~v~-------~~~~~y~~~a~ 826 (944)
.|.- ..+..|+ ..+|-+|++||+++|||+|++| ++.+ ..+.++...|+.--+. -+.++-.+...
T Consensus 352 IL~H-~~v~~Fv---tHcGwnS~~Eai~~GVP~l~~P~~~DQ~---~Na~~v~~~g~Gv~l~~~~~~~~~~~e~i~~av~ 424 (472)
T PLN02670 352 ILSH-ESVGGFL---THCGWNSVVEGLGFGRVLILFPVLNEQG---LNTRLLHGKKLGLEVPRDERDGSFTSDSVAESVR 424 (472)
T ss_pred HhcC-cccceee---ecCCcchHHHHHHcCCCEEeCcchhccH---HHHHHHHHcCeeEEeeccccCCcCcHHHHHHHHH
Confidence 5532 3344465 3588899999999999999998 4432 3344445556654432 25677777777
Q ss_pred HHhcCHHHHHHHHHH---HHHHhhcCCCCChHHHHHHHHHHHHHH
Q 002273 827 QLASDVTALANLRMS---LRDLMSKSPVCDGQNFALGLESTYRNM 868 (944)
Q Consensus 827 ~l~~d~~~~~~~r~~---~~~~~~~~~~~~~~~~~~~~e~~~~~~ 868 (944)
++..|++ -..+|++ +++.+... -.....++.+++.+..+
T Consensus 425 ~vm~~~~-g~~~r~~a~~l~~~~~~~--~~~~~~~~~~~~~l~~~ 466 (472)
T PLN02670 425 LAMVDDA-GEEIRDKAKEMRNLFGDM--DRNNRYVDELVHYLREN 466 (472)
T ss_pred HHhcCcc-hHHHHHHHHHHHHHHhCc--chhHHHHHHHHHHHHHh
Confidence 7776642 2233333 33444333 35778888888877654
No 320
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.83 E-value=0.018 Score=67.55 Aligned_cols=230 Identities=25% Similarity=0.297 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHcC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCcHHHHH
Q 002273 192 PAYYNLGVVYSELM-----QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG---DLESAIACYERCLAVSPNFEIAKN 263 (944)
Q Consensus 192 ~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~ 263 (944)
.+.+.+|.+|.+-. +++.|+.+|.++.+.. ++.+.+.+|.++.... ++..|.++|..+.+. .+..+.+
T Consensus 289 ~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~ 364 (552)
T KOG1550|consen 289 PAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIY 364 (552)
T ss_pred ccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHH
Confidence 34555555555422 4555666666655442 3445555555555543 445666666655432 3444555
Q ss_pred HHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CChHHH
Q 002273 264 NMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM-LKFDMA 342 (944)
Q Consensus 264 ~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A 342 (944)
.++.++..-. ....+...|..+++++.+.. .+.+...++..+... +.++.+
T Consensus 365 ~la~~y~~G~--------------------------gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~ 416 (552)
T KOG1550|consen 365 RLALCYELGL--------------------------GVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTA 416 (552)
T ss_pred HHHHHHHhCC--------------------------CcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHH
Confidence 5555443221 11334566666666666655 233333333333222 555555
Q ss_pred HHHHHHHHhhCCCCHH----HHHHHHHHHHH----CCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc----CCHHHH
Q 002273 343 IVFYELAFHFNPHCAE----ACNNLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ----GKMDAA 410 (944)
Q Consensus 343 ~~~~~~al~~~p~~~~----~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A 410 (944)
...+....+..-+.+. .+......... ..+.+.+...+.++.. ..+..+...+|.+|+.- .+++.|
T Consensus 417 ~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~d~~~a 494 (552)
T KOG1550|consen 417 LALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAA--QGNADAILKLGDYYYYGLGTGRDPEKA 494 (552)
T ss_pred HHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHh--ccCHHHHhhhcceeeecCCCCCChHHH
Confidence 5554444443222111 11111101111 1244555556655543 45677778888887654 458888
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCCC
Q 002273 411 AEMIEKAIAANPTYAEAYNNLGVLYRDA---GSISLAIDAYEQCLKIDPDS 458 (944)
Q Consensus 411 ~~~l~~al~~~p~~~~a~~~la~~~~~~---g~~~eA~~~~~~al~l~P~~ 458 (944)
...|.++.... ....+++|.++..- ..+..|..+|.++.+.+.+.
T Consensus 495 ~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~~~~ 542 (552)
T KOG1550|consen 495 AAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASEEDSRA 542 (552)
T ss_pred HHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHhcCchh
Confidence 88888887776 78888888888642 12678888888888766543
No 321
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.81 E-value=0.013 Score=68.79 Aligned_cols=176 Identities=23% Similarity=0.231 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcC---
Q 002273 64 FVDALALYEIVLEKDSGNVEAHIGKGICLQMQ-----NMGRLAFDSFSEAVKL-----DPQNACAHTHCGILYKDEG--- 130 (944)
Q Consensus 64 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g--- 130 (944)
..+|..+++.+.+. .+..+...+|.++..- .+.+.|+.+|+.+.+. .-.++.+.+.+|.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCc
Confidence 46788888887665 5788888999988754 5899999999998771 1125567888999988743
Q ss_pred --CHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH--
Q 002273 131 --RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG---NTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE-- 203 (944)
Q Consensus 131 --~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-- 203 (944)
++..|..+|.++-.....+ + .+.+|.++..-. ++..|.++|..+.+. .+..+.+.++.+|..
T Consensus 306 ~~d~~~A~~~~~~aA~~g~~~--a-------~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G~ 374 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAELGNPD--A-------QYLLGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELGL 374 (552)
T ss_pred cccHHHHHHHHHHHHhcCCch--H-------HHHHHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhCC
Confidence 6788999999988775443 2 445555555443 678899999888764 467888888888864
Q ss_pred --cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh
Q 002273 204 --LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR-GDLESAIACYERCLAV 254 (944)
Q Consensus 204 --~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 254 (944)
..+...|..+++++.+.. .+.+...++.++... +++..+...+......
T Consensus 375 gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~ 426 (552)
T KOG1550|consen 375 GVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAEL 426 (552)
T ss_pred CcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHh
Confidence 347889999999998876 455556666555443 6676666665554443
No 322
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=97.81 E-value=0.00097 Score=75.47 Aligned_cols=165 Identities=13% Similarity=0.172 Sum_probs=107.2
Q ss_pred CCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHH
Q 002273 679 TNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 758 (944)
Q Consensus 679 ~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 758 (944)
.+..++|.+++......+..++...+.+...|--.++..+.+.. ...+ . .+ +++|.+.+.++ .. .
T Consensus 223 ~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~----~~~~----~--~~-~~~v~~~~~~p-~~---~ 287 (392)
T TIGR01426 223 DGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVD----PADL----G--EL-PPNVEVRQWVP-QL---E 287 (392)
T ss_pred CCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCCC----hhHh----c--cC-CCCeEEeCCCC-HH---H
Confidence 34567788888877777777776677777666544555443311 1111 1 23 57888888876 33 4
Q ss_pred hcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccccC---CHHHHHHHHHHHhcCHHHH
Q 002273 759 AYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQLASDVTAL 835 (944)
Q Consensus 759 ~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~---~~~~y~~~a~~l~~d~~~~ 835 (944)
.+..+|+++- .+|..|++|||.+|+|+|.++...- ...-+..+...|....+.. +.++..+...++..|++.+
T Consensus 288 ll~~~~~~I~---hgG~~t~~Eal~~G~P~v~~p~~~d-q~~~a~~l~~~g~g~~l~~~~~~~~~l~~ai~~~l~~~~~~ 363 (392)
T TIGR01426 288 ILKKADAFIT---HGGMNSTMEALFNGVPMVAVPQGAD-QPMTARRIAELGLGRHLPPEEVTAEKLREAVLAVLSDPRYA 363 (392)
T ss_pred HHhhCCEEEE---CCCchHHHHHHHhCCCEEecCCccc-HHHHHHHHHHCCCEEEeccccCCHHHHHHHHHHHhcCHHHH
Confidence 4577999982 4666789999999999999885432 3334555667787765532 5678888888899998766
Q ss_pred HHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 002273 836 ANLRMSLRDLMSKSPVCDGQNFALGLESTY 865 (944)
Q Consensus 836 ~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~ 865 (944)
+++ +.+++.+... ......+..+|+.+
T Consensus 364 ~~~-~~l~~~~~~~--~~~~~aa~~i~~~~ 390 (392)
T TIGR01426 364 ERL-RKMRAEIREA--GGARRAADEIEGFL 390 (392)
T ss_pred HHH-HHHHHHHHHc--CCHHHHHHHHHHhh
Confidence 665 3444554432 35666666666654
No 323
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.80 E-value=0.021 Score=60.88 Aligned_cols=131 Identities=21% Similarity=0.087 Sum_probs=103.7
Q ss_pred HHHcCCHHHHHHHHHHHHHcC-CCChhHHhHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHhh----CC---C-------
Q 002273 126 YKDEGRLVEAAESYHKALSAD-PSYKPAAECLAIVLTDLGTSLKLAG-NTQDGIQKYYEALKI----DP---H------- 189 (944)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~lg~~~~~~g-~~~~A~~~~~~al~~----~p---~------- 189 (944)
..++|+++.|..++.|+-... ..++.....++.++++.|......+ ++++|..+++++++. .+ .
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 357899999999999998766 6667777889999999999999999 999999999999887 21 1
Q ss_pred CHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 002273 190 YAPAYYNLGVVYSELMQYD---TALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP 256 (944)
Q Consensus 190 ~~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 256 (944)
...++..++.+|...+.++ +|...++.+-...|+.+..+...-.+..+.++.+++.+.+.+++...+
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence 1345677888888877654 455666666667788788876666666668899999999999887644
No 324
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=97.79 E-value=0.11 Score=58.44 Aligned_cols=405 Identities=11% Similarity=-0.005 Sum_probs=244.3
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHH
Q 002273 63 KFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK-DEGRLVEAAESYHK 141 (944)
Q Consensus 63 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~ 141 (944)
..+.+...|...|...|---..|...|..-.+.|..+.+.+.|++++.--|-+...|..+-.... ..|+.+.-...|++
T Consensus 60 ~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~ 139 (577)
T KOG1258|consen 60 DVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFER 139 (577)
T ss_pred HHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 33666777888888899888899999999999999999999999999988887777766544333 45677777788888
Q ss_pred HHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc------CCHHHHHHHHH
Q 002273 142 ALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL------MQYDTALGCYE 215 (944)
Q Consensus 142 al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~------g~~~~A~~~~~ 215 (944)
|......+-.. ...+-..-.....++++..-...|++.++.--.....++..=.-+.+. ...+++...-.
T Consensus 140 A~~~vG~dF~S----~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~ 215 (577)
T KOG1258|consen 140 AKSYVGLDFLS----DPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRS 215 (577)
T ss_pred HHHhcccchhc----cHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhh
Confidence 88766543322 111222223335677888888888888875333222222211111111 11222222211
Q ss_pred HHHHh--CCC---CHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCC
Q 002273 216 KAALE--RPM---YAEAYC-NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGS 289 (944)
Q Consensus 216 ~al~~--~p~---~~~~~~-~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~ 289 (944)
..... .+. ..+.+- .+-.+-...+.++++...+.+...+.. .++.........+.........+
T Consensus 216 ~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~----------~~~~~s~~~~~kr~~fE~~Ikrp 285 (577)
T KOG1258|consen 216 DVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHE----------KVYQKSEEEEEKRWGFEEGIKRP 285 (577)
T ss_pred hHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHH----------HHHHhhHhHHHHHHhhhhhcccc
Confidence 11110 000 000000 000000001112222222211111100 00000000000111111111111
Q ss_pred CCCc------------hhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-CCCC
Q 002273 290 NFQS------------PFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF-NPHC 356 (944)
Q Consensus 290 ~~~~------------~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~ 356 (944)
.+.. .........|+++...-.|++++--.....+.|...+......|+.+-|...+..+.++ .|..
T Consensus 286 Yfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~ 365 (577)
T KOG1258|consen 286 YFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKT 365 (577)
T ss_pred ccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCC
Confidence 1111 12334556899999999999999888888999999999999999999999999888887 4667
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH---HHHHHHHhCCCC---HHHHHH
Q 002273 357 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE---MIEKAIAANPTY---AEAYNN 430 (944)
Q Consensus 357 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~---~l~~al~~~p~~---~~a~~~ 430 (944)
+.+...-+.+....|++..|...+++..+..|+...+-..........|+.+.+.. ++.....-..+. ...+..
T Consensus 366 ~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~ 445 (577)
T KOG1258|consen 366 PIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVK 445 (577)
T ss_pred cHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHH
Confidence 88888888999999999999999999998889998888888888889999988884 333322221111 233444
Q ss_pred HHHH-HHHcCCHHHHHHHHHHHHhhCCCChhhhhhHHHHhhhccCCChHHHH
Q 002273 431 LGVL-YRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLF 481 (944)
Q Consensus 431 la~~-~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~ 481 (944)
.++. +.-.++.+.|...+.++++..|++...+..+.....+...+.....+
T Consensus 446 ~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~d~~ 497 (577)
T KOG1258|consen 446 FARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPSGREYDLL 497 (577)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcchhhhhh
Confidence 4544 34467899999999999999999987776654433333334333333
No 325
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=97.79 E-value=0.00023 Score=79.89 Aligned_cols=155 Identities=15% Similarity=0.174 Sum_probs=98.8
Q ss_pred cCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCC-------------cEEEccCccCcHHHHHh
Q 002273 693 KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESL-------------RVDLLPLILLNHDHMQA 759 (944)
Q Consensus 693 K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~-------------rv~~~~~~~~~~~~~~~ 759 (944)
+.-|.++++..++.+. |+.++++...+. ...+.+.+.+.+.|+... .+.+.+. ..+....
T Consensus 221 ~~lp~~l~al~~L~~~-~~~~~v~~~~~~---~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~~~ 293 (396)
T TIGR03492 221 RNLKLLLRALEALPDS-QPFVFLAAIVPS---LSLEKLQAILEDLGWQLEGSSEDQTSLFQKGTLEVLLG---RGAFAEI 293 (396)
T ss_pred ccHHHHHHHHHHHhhC-CCeEEEEEeCCC---CCHHHHHHHHHhcCceecCCccccchhhccCceEEEec---hHhHHHH
Confidence 4445788887777655 777777654221 223445556666676422 2444443 3467788
Q ss_pred cccccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchhHHHhhc----CCcccc-cCCHHHHHHHHHHHhcCHHH
Q 002273 760 YSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKV----GLKHLI-AKNEDEYVQLALQLASDVTA 834 (944)
Q Consensus 760 ~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~----gl~~~v-~~~~~~y~~~a~~l~~d~~~ 834 (944)
|+.+|++|-. .||+|.|++.+|+|+|..++..+ ...+.++... |-...+ -.+.+...+...+|..|++.
T Consensus 294 l~~ADlvI~r----SGt~T~E~a~lg~P~Ilip~~~~--q~na~~~~~~~~l~g~~~~l~~~~~~~l~~~l~~ll~d~~~ 367 (396)
T TIGR03492 294 LHWADLGIAM----AGTATEQAVGLGKPVIQLPGKGP--QFTYGFAEAQSRLLGGSVFLASKNPEQAAQVVRQLLADPEL 367 (396)
T ss_pred HHhCCEEEEC----cCHHHHHHHHhCCCEEEEeCCCC--HHHHHHHHhhHhhcCCEEecCCCCHHHHHHHHHHHHcCHHH
Confidence 8999999955 55777999999999999996533 2345555542 433333 45678888889999999998
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 002273 835 LANLRMSLRDLMSKSPVCDGQNFALGLE 862 (944)
Q Consensus 835 ~~~~r~~~~~~~~~~~~~~~~~~~~~~e 862 (944)
+.++++..+.++.. -....+.++.++
T Consensus 368 ~~~~~~~~~~~lg~--~~a~~~ia~~i~ 393 (396)
T TIGR03492 368 LERCRRNGQERMGP--PGASARIAESIL 393 (396)
T ss_pred HHHHHHHHHHhcCC--CCHHHHHHHHHH
Confidence 88888655555431 123444444443
No 326
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.78 E-value=0.0024 Score=69.74 Aligned_cols=104 Identities=16% Similarity=0.141 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHH
Q 002273 357 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPN--FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA-NPTYAEAYNNLGV 433 (944)
Q Consensus 357 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~l~~al~~-~p~~~~a~~~la~ 433 (944)
..+...+|.+..+.|+.++|++.++..++..|. +..++.+|..++..++.|.++...+.+.-+. -|+.+...+.-+.
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence 344556777777777777777777777776654 3457777777777777777777777775433 2455555555444
Q ss_pred HHHH-------------cC---CHHHHHHHHHHHHhhCCCChh
Q 002273 434 LYRD-------------AG---SISLAIDAYEQCLKIDPDSRN 460 (944)
Q Consensus 434 ~~~~-------------~g---~~~eA~~~~~~al~l~P~~~~ 460 (944)
+..+ .| .-..|.+...+|++.||.-+.
T Consensus 339 LkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 339 LKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred HHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 3322 11 123477889999999998764
No 327
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.77 E-value=0.0035 Score=68.99 Aligned_cols=108 Identities=19% Similarity=0.184 Sum_probs=94.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 002273 329 LGVAYGEMLKFDMAIVFYELAFHFNPHCA-EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM 407 (944)
Q Consensus 329 la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 407 (944)
.|..+...|+...|++++..++...|... ....++|.++...|-.-.|-..+.+++.+....+-.++.+|..+..+.+.
T Consensus 613 aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i 692 (886)
T KOG4507|consen 613 AGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNI 692 (886)
T ss_pred ccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhh
Confidence 34455667999999999999999988653 45778999999999999999999999999988889999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002273 408 DAAAEMIEKAIAANPTYAEAYNNLGVLYR 436 (944)
Q Consensus 408 ~~A~~~l~~al~~~p~~~~a~~~la~~~~ 436 (944)
+.|++.|++|++++|++++....|-.+-.
T Consensus 693 ~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 693 SGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 99999999999999999988777665544
No 328
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.77 E-value=0.00046 Score=73.52 Aligned_cols=135 Identities=9% Similarity=0.041 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002273 325 AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD-RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 403 (944)
Q Consensus 325 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 403 (944)
+|..+.....+.+..+.|..+|.++.+..+....+|...|.+.+. .++.+.|..+|+.+++..|.+...|..+...+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 566677777777789999999999987666678899999999777 5666669999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 002273 404 QGKMDAAAEMIEKAIAANPTYA---EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 459 (944)
Q Consensus 404 ~g~~~~A~~~l~~al~~~p~~~---~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~ 459 (944)
.|+.+.|..+|++++..-+... .+|......-.+.|+.+...+.++++.+..|++.
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999998866544 5788888888999999999999999999999843
No 329
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=97.76 E-value=0.00067 Score=76.33 Aligned_cols=128 Identities=11% Similarity=0.129 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCC-CC
Q 002273 696 PKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AG 774 (944)
Q Consensus 696 ~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-~~ 774 (944)
+..+..+.++.+++|+..|-| |.+. .+..+|.+. .+. ++-+.+-+.. +.+.-..|..||++||+... +.
T Consensus 291 s~~I~~i~~Lv~~lPd~~f~I-ga~t---e~s~kL~~L-~~y---~nvvly~~~~--~~~l~~ly~~~dlyLdin~~e~~ 360 (438)
T TIGR02919 291 SDQIEHLEEIVQALPDYHFHI-AALT---EMSSKLMSL-DKY---DNVKLYPNIT--TQKIQELYQTCDIYLDINHGNEI 360 (438)
T ss_pred HHHHHHHHHHHHhCCCcEEEE-EecC---cccHHHHHH-Hhc---CCcEEECCcC--hHHHHHHHHhccEEEEccccccH
Confidence 899999999999999999999 3321 223566555 554 3444444433 35788999999999999988 55
Q ss_pred cccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccc-cCCHHHHHHHHHHHhcCHHHHHHHHH
Q 002273 775 TTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLI-AKNEDEYVQLALQLASDVTALANLRM 840 (944)
Q Consensus 775 ~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v-~~~~~~y~~~a~~l~~d~~~~~~~r~ 840 (944)
+.+..||+..|+|||+..-..+..... .-..++ ..+.++++++.+.+.+|++.++..-.
T Consensus 361 ~~al~eA~~~G~pI~afd~t~~~~~~i-------~~g~l~~~~~~~~m~~~i~~lL~d~~~~~~~~~ 420 (438)
T TIGR02919 361 LNAVRRAFEYNLLILGFEETAHNRDFI-------ASENIFEHNEVDQLISKLKDLLNDPNQFRELLE 420 (438)
T ss_pred HHHHHHHHHcCCcEEEEecccCCcccc-------cCCceecCCCHHHHHHHHHHHhcCHHHHHHHHH
Confidence 889999999999999966443322211 002233 46889999999999999975554433
No 330
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=97.75 E-value=0.0013 Score=73.82 Aligned_cols=165 Identities=16% Similarity=0.162 Sum_probs=110.0
Q ss_pred CCCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHH
Q 002273 678 LTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 757 (944)
Q Consensus 678 ~~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~ 757 (944)
..+..++|-++....=- .+++.+..+.+...|-.+++-.+. . +. ...++ ++.+...+.++ +.
T Consensus 234 ~~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~-~-----~~------~~~~~-p~n~~v~~~~p----~~ 295 (406)
T COG1819 234 PADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLGG-A-----RD------TLVNV-PDNVIVADYVP----QL 295 (406)
T ss_pred cCCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEeccc-c-----cc------ccccC-CCceEEecCCC----HH
Confidence 34456677777655422 777777777777776554444432 1 10 12244 68888888876 35
Q ss_pred HhcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCccccc---CCHHHHHHHHHHHhcCHHH
Q 002273 758 QAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA---KNEDEYVQLALQLASDVTA 834 (944)
Q Consensus 758 ~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~---~~~~~y~~~a~~l~~d~~~ 834 (944)
..+..+|+++ ..||++||+|||..|||+|.+|.. +-.-.-|.-+..+|.+..+- .+++.-.+...+..+|...
T Consensus 296 ~~l~~ad~vI---~hGG~gtt~eaL~~gvP~vv~P~~-~DQ~~nA~rve~~G~G~~l~~~~l~~~~l~~av~~vL~~~~~ 371 (406)
T COG1819 296 ELLPRADAVI---HHGGAGTTSEALYAGVPLVVIPDG-ADQPLNAERVEELGAGIALPFEELTEERLRAAVNEVLADDSY 371 (406)
T ss_pred HHhhhcCEEE---ecCCcchHHHHHHcCCCEEEecCC-cchhHHHHHHHHcCCceecCcccCCHHHHHHHHHHHhcCHHH
Confidence 5667799998 248888999999999999999976 22223566667889988775 5777777777888888766
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 002273 835 LANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 867 (944)
Q Consensus 835 ~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 867 (944)
+++.+. +++.+... ...+..+..+|+..++
T Consensus 372 ~~~~~~-~~~~~~~~--~g~~~~a~~le~~~~~ 401 (406)
T COG1819 372 RRAAER-LAEEFKEE--DGPAKAADLLEEFARE 401 (406)
T ss_pred HHHHHH-HHHHhhhc--ccHHHHHHHHHHHHhc
Confidence 655443 44444322 3466688888876653
No 331
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.00047 Score=67.69 Aligned_cols=74 Identities=14% Similarity=0.082 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhh
Q 002273 391 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 464 (944)
Q Consensus 391 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~ 464 (944)
...+.|++.|+...|+|-++++.....+..+|.+..+++..|.+....=+..+|...|.++|+++|.-..+...
T Consensus 230 tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsr 303 (329)
T KOG0545|consen 230 TPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSR 303 (329)
T ss_pred hHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999999999987655544
No 332
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.71 E-value=0.11 Score=56.01 Aligned_cols=407 Identities=11% Similarity=-0.024 Sum_probs=218.9
Q ss_pred CCCCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHH
Q 002273 41 STLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHT 120 (944)
Q Consensus 41 ~~~~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 120 (944)
....|.+.-.++++...+-.+|.+++-.+.|++...-.|--..+|......-+..+++.....+|.+++...-+ .+.|.
T Consensus 35 IkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~-ldLW~ 113 (660)
T COG5107 35 IKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN-LDLWM 113 (660)
T ss_pred hhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc-HhHHH
Confidence 35667788999999999999999999999999999888887778777666666778888888888888875432 33443
Q ss_pred HHHHHHHHcC-----C----HHHHHHHHHHHHHcCCCChhHHhHHHHHHHH---HHHHHHHcCChHHHHHHHHHHHhhCC
Q 002273 121 HCGILYKDEG-----R----LVEAAESYHKALSADPSYKPAAECLAIVLTD---LGTSLKLAGNTQDGIQKYYEALKIDP 188 (944)
Q Consensus 121 ~la~~~~~~g-----~----~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---lg~~~~~~g~~~~A~~~~~~al~~~p 188 (944)
..-..-.+.+ + .-+|.+..-...-.+|.....|......+.. ++. ...+.+.+.-...|.+++...-
T Consensus 114 lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~k-wEeQqrid~iR~~Y~ral~tP~ 192 (660)
T COG5107 114 LYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGK-WEEQQRIDKIRNGYMRALQTPM 192 (660)
T ss_pred HHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhcccccc-HHHHHHHHHHHHHHHHHHcCcc
Confidence 3222222211 1 2223333323333455555554443332211 111 1133444555555555554322
Q ss_pred CCHH-HHHHHH---------HHHHHcC----CHHHHH-------------------------------------------
Q 002273 189 HYAP-AYYNLG---------VVYSELM----QYDTAL------------------------------------------- 211 (944)
Q Consensus 189 ~~~~-~~~~la---------~~~~~~g----~~~~A~------------------------------------------- 211 (944)
++.+ .|...- ..-.-.| -|-.|.
T Consensus 193 ~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~ 272 (660)
T COG5107 193 GNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEM 272 (660)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhh
Confidence 2111 000000 0000000 011111
Q ss_pred ----------------HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhh
Q 002273 212 ----------------GCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK 275 (944)
Q Consensus 212 ----------------~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~ 275 (944)
-.+++++...+-.++.|+.....+...++-++|+...++.+...|. ....++..+....+.
T Consensus 273 en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---L~~~lse~yel~nd~ 349 (660)
T COG5107 273 ENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---LTMFLSEYYELVNDE 349 (660)
T ss_pred cCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---hheeHHHHHhhcccH
Confidence 1234444445556778888888888999999999999998888776 333333333322221
Q ss_pred hh-----hhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002273 276 TY-----GRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 350 (944)
Q Consensus 276 ~~-----~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 350 (944)
.. .+........-....+.. .-...++++...+++-+-. .+..-+++..-..-.+..-.+.|...|-++-
T Consensus 350 e~v~~~fdk~~q~L~r~ys~~~s~~--~s~~D~N~e~~~Ell~kr~---~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~r 424 (660)
T COG5107 350 EAVYGCFDKCTQDLKRKYSMGESES--ASKVDNNFEYSKELLLKRI---NKLTFVFCVHLNYVLRKRGLEAARKLFIKLR 424 (660)
T ss_pred HHHhhhHHHHHHHHHHHHhhhhhhh--hccccCCccccHHHHHHHH---hhhhhHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence 00 000000000000000000 0000111111111111000 0112233334444444455677777777776
Q ss_pred hhCCCCHHHHHHHHHH-HHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHH
Q 002273 351 HFNPHCAEACNNLGVI-YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY--AEA 427 (944)
Q Consensus 351 ~~~p~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~--~~a 427 (944)
+..-....++..-|.+ +...|++.-|-..|+-.+...|+.+......-..+...++-+.|...|++++..-... ..+
T Consensus 425 k~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~i 504 (660)
T COG5107 425 KEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRI 504 (660)
T ss_pred ccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHH
Confidence 6543333444433333 4457888888888888888888888777777777788888888888888877653322 344
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002273 428 YNNLGVLYRDAGSISLAIDAYEQCLKIDPD 457 (944)
Q Consensus 428 ~~~la~~~~~~g~~~eA~~~~~~al~l~P~ 457 (944)
|..+-..-..-|+...+...=++..++.|.
T Consensus 505 y~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 505 YDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 555555555566666666666666666664
No 333
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.71 E-value=0.13 Score=66.50 Aligned_cols=397 Identities=13% Similarity=0.051 Sum_probs=227.3
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 002273 53 SYANILRSRNKFVDALALYEIVLEKDSG----NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKD 128 (944)
Q Consensus 53 ~~A~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 128 (944)
.+|..-++.+.|.+|+.++++- ...+. ....++.+-.+|...++++.-.-.... ...+| .+...-.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~-~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~-r~a~~----sl~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESH-RSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSAR-RFADP----SLYQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHH-hhcCc----cHHHHHHHHHh
Confidence 6788888999999999999985 22221 123444555588888888876665553 11222 23444455677
Q ss_pred cCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHH-HHHHcCCH
Q 002273 129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGV-VYSELMQY 207 (944)
Q Consensus 129 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~-~~~~~g~~ 207 (944)
.|++..|..+|+++++.+|+.... +...-......+.++..+...+-.....++...-++.++. +..+.+++
T Consensus 1462 ~g~~~da~~Cye~~~q~~p~~~~~-------~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qw 1534 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDPDKEKH-------HSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQW 1534 (2382)
T ss_pred hccHHHHHHHHHHhhcCCCccccc-------hhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcch
Confidence 899999999999999999986654 2333334445677777777776666555555555555543 33567777
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH-----HHHHHHHHH-------HhCCCcHHHHHHHHHHHHHhhhh
Q 002273 208 DTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLES-----AIACYERCL-------AVSPNFEIAKNNMAIALTDLGTK 275 (944)
Q Consensus 208 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~-----A~~~~~~al-------~~~p~~~~~~~~la~~l~~~~~~ 275 (944)
+.-..+.. ..+-++..+.. +|.+.....+-+. .++..+..+ .........+..+..+.......
T Consensus 1535 D~~e~~l~---~~n~e~w~~~~-~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~ 1610 (2382)
T KOG0890|consen 1535 DLLESYLS---DRNIEYWSVES-IGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELE 1610 (2382)
T ss_pred hhhhhhhh---cccccchhHHH-HHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence 76655544 22222222221 4555444332221 111111110 00011111222221111111111
Q ss_pred hhhhHHHHHhhcCCC-CCc-h---hHHHhhhcCCHHHHHHHHHHHHH---hC----CCCHHHHHHHHHHHHHcCChHHHH
Q 002273 276 TYGRALLLFRLNGSN-FQS-P---FFELVKLEGDINQGVAYYKKALY---YN----WHYADAMYNLGVAYGEMLKFDMAI 343 (944)
Q Consensus 276 ~~~~a~~~~~~~~~~-~~~-~---~~~l~~~~~~~~~A~~~~~~al~---~~----p~~~~~~~~la~~~~~~g~~~~A~ 343 (944)
...+.+......... ..+ . ..+......+..+-+-.+++++- .+ ....+.|...|.+....|+++.|.
T Consensus 1611 ~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~ 1690 (2382)
T KOG0890|consen 1611 NSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQ 1690 (2382)
T ss_pred HHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHH
Confidence 111111111111111 111 1 11111112223444444444432 12 234689999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CC----------C------HHHHHHHHHHHHHcCC
Q 002273 344 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK-PN----------F------SQSLNNLGVVYTVQGK 406 (944)
Q Consensus 344 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~----------~------~~~~~~la~~~~~~g~ 406 (944)
.++-+|.+.. -++++...|..+...|+-..|+..+++.++.+ |+ . ..+...++......++
T Consensus 1691 nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n 1768 (2382)
T KOG0890|consen 1691 NALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGN 1768 (2382)
T ss_pred HHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcc
Confidence 9999888776 57899999999999999999999999999764 22 1 1234445555555565
Q ss_pred H--HHHHHHHHHHHHhCCCCHHHHHHHHHHHH------------HcCCHHH---HHHHHHHHHhhCCCChhhhhhHHHH
Q 002273 407 M--DAAAEMIEKAIAANPTYAEAYNNLGVLYR------------DAGSISL---AIDAYEQCLKIDPDSRNAGQNRLLA 468 (944)
Q Consensus 407 ~--~~A~~~l~~al~~~p~~~~a~~~la~~~~------------~~g~~~e---A~~~~~~al~l~P~~~~a~~~~~~~ 468 (944)
+ ++-+++|..+.+..|....-++.+|..|. +.|++.. ++..|.+++...-.+...-.-+++.
T Consensus 1769 ~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~~~~~~~sl~yg~~~iyqsmPRllT 1847 (2382)
T KOG0890|consen 1769 FESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKAIYFFGRALYYGNQHLYQSMPRLLT 1847 (2382)
T ss_pred hhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHhcchhHHHhhhHHHH
Confidence 4 35688899999999987777777775543 3455555 6666778877766554443333433
No 334
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.70 E-value=0.038 Score=71.09 Aligned_cols=359 Identities=11% Similarity=0.042 Sum_probs=215.4
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCC--C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHH
Q 002273 87 GKGICLQMQNMGRLAFDSFSEAVKLDPQ--N--ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTD 162 (944)
Q Consensus 87 ~la~~~~~~g~~~~A~~~~~~al~~~p~--~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 162 (944)
.++.+-++.+.|..|+.++++. ...+. + ...+..+-.+|...++++.-.-.... ....|+ +..
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~-~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~-r~a~~s-----------l~~ 1454 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESH-RSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSAR-RFADPS-----------LYQ 1454 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHH-hhcCcc-----------HHH
Confidence 6788888999999999999985 22221 1 22344455588899998877666653 222333 344
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHcCCH
Q 002273 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMG-VIYKNRGDL 241 (944)
Q Consensus 163 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la-~~~~~~g~~ 241 (944)
.-......|++..|..+|+++++.+|+....+...-......+.++..+...+-.....++..+-++.++ .+..+.+++
T Consensus 1455 qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qw 1534 (2382)
T KOG0890|consen 1455 QILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQW 1534 (2382)
T ss_pred HHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcch
Confidence 4455667899999999999999999998888888888888999999999888877766666555555554 344677777
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHH-----
Q 002273 242 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKAL----- 316 (944)
Q Consensus 242 ~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al----- 316 (944)
+.-..+.. ..+-.+..+. .++.++....+.+.-................+. .....+.+..+.++.-++.
T Consensus 1535 D~~e~~l~---~~n~e~w~~~-~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~ls-a~s~~~Sy~~~Y~~~~kLH~l~el 1609 (2382)
T KOG0890|consen 1535 DLLESYLS---DRNIEYWSVE-SIGKLLLRNKKKDEIATLDLIENSRELVIENLS-ACSIEGSYVRSYEILMKLHLLLEL 1609 (2382)
T ss_pred hhhhhhhh---cccccchhHH-HHHHHHHhhcccchhhHHHHHHHHHHHhhhhHH-HhhccchHHHHHHHHHHHHHHHHH
Confidence 76655543 1111111111 133333332222111100000000000000000 0111112223322222211
Q ss_pred -------H-hCCC-----CHHHHHHHHHHHHHcCChHHHHHHHHHHHh---hC----CCCHHHHHHHHHHHHHCCCHHHH
Q 002273 317 -------Y-YNWH-----YADAMYNLGVAYGEMLKFDMAIVFYELAFH---FN----PHCAEACNNLGVIYKDRDNLDKA 376 (944)
Q Consensus 317 -------~-~~p~-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~----p~~~~~~~~la~~~~~~g~~~~A 376 (944)
. ..++ +.+-|.+....-....+..+-+-.+++++- .+ ....+.|...|++....|+++.|
T Consensus 1610 ~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A 1689 (2382)
T KOG0890|consen 1610 ENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRA 1689 (2382)
T ss_pred HHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHH
Confidence 1 1111 112222222221112223333434444332 23 33478999999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC----------C------HHHHHHHHHHHHHcC
Q 002273 377 VECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN-PT----------Y------AEAYNNLGVLYRDAG 439 (944)
Q Consensus 377 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~-p~----------~------~~a~~~la~~~~~~g 439 (944)
..++-+|.+.. -+.+....|..+...|+...|+..+++.++.+ |+ . ..+.+.++.-....|
T Consensus 1690 ~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~ 1767 (2382)
T KOG0890|consen 1690 QNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESG 1767 (2382)
T ss_pred HHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhc
Confidence 99999998876 57899999999999999999999999999763 22 1 224455555566666
Q ss_pred CH--HHHHHHHHHHHhhCCCChhhhhhH
Q 002273 440 SI--SLAIDAYEQCLKIDPDSRNAGQNR 465 (944)
Q Consensus 440 ~~--~eA~~~~~~al~l~P~~~~a~~~~ 465 (944)
++ +.-+++|+.+.++.|...+-+..+
T Consensus 1768 n~~s~~ilk~Y~~~~ail~ewe~~hy~l 1795 (2382)
T KOG0890|consen 1768 NFESKDILKYYHDAKAILPEWEDKHYHL 1795 (2382)
T ss_pred chhHHHHHHHHHHHHHHcccccCceeeH
Confidence 64 345788999999999777666553
No 335
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=97.70 E-value=0.00022 Score=61.83 Aligned_cols=86 Identities=13% Similarity=0.127 Sum_probs=64.4
Q ss_pred EecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhHHHhhc--CCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHH
Q 002273 766 SLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKV--GLKHLIAKNEDEYVQLALQLASDVTALANLRMSL 842 (944)
Q Consensus 766 ~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~--gl~~~v~~~~~~y~~~a~~l~~d~~~~~~~r~~~ 842 (944)
+|.+..+ +.+...+|+|++|+|||+ .+.+ .+-..+ |..-+...|+++.+++...|.+|++.+++++++.
T Consensus 2 ~Ln~~~~~~~~~r~~E~~a~G~~vi~-------~~~~-~~~~~~~~~~~~~~~~~~~el~~~i~~ll~~~~~~~~ia~~a 73 (92)
T PF13524_consen 2 NLNPSRSDGPNMRIFEAMACGTPVIS-------DDSP-GLREIFEDGEHIITYNDPEELAEKIEYLLENPEERRRIAKNA 73 (92)
T ss_pred EeeCCCCCCCchHHHHHHHCCCeEEE-------CChH-HHHHHcCCCCeEEEECCHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 4555444 446689999999999999 4331 111111 4445667799999999999999999999999999
Q ss_pred HHHhhcCCCCChHHHHHHH
Q 002273 843 RDLMSKSPVCDGQNFALGL 861 (944)
Q Consensus 843 ~~~~~~~~~~~~~~~~~~~ 861 (944)
++.+.+. +++...+.++
T Consensus 74 ~~~v~~~--~t~~~~~~~i 90 (92)
T PF13524_consen 74 RERVLKR--HTWEHRAEQI 90 (92)
T ss_pred HHHHHHh--CCHHHHHHHH
Confidence 9998755 7777777655
No 336
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=0.00026 Score=69.32 Aligned_cols=93 Identities=22% Similarity=0.212 Sum_probs=74.4
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 002273 328 NLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM 407 (944)
Q Consensus 328 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 407 (944)
.-|..++...+|+.|+..|.+++.++|..+..+.+.+.++++.++++.+.....+++++.|+....++.+|.++.....+
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccc
Confidence 34555666677888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHh
Q 002273 408 DAAAEMIEKAIAA 420 (944)
Q Consensus 408 ~~A~~~l~~al~~ 420 (944)
++|+..++++..+
T Consensus 95 ~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 95 DEAIKVLQRAYSL 107 (284)
T ss_pred cHHHHHHHHHHHH
Confidence 8888888888654
No 337
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=0.001 Score=65.40 Aligned_cols=109 Identities=18% Similarity=0.113 Sum_probs=95.6
Q ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--------hCCCC----------HHHHHHHHHHHHHhCCHHHHHHHH
Q 002273 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLE--------KDSGN----------VEAHIGKGICLQMQNMGRLAFDSF 105 (944)
Q Consensus 44 ~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~--------~~p~~----------~~~~~~la~~~~~~g~~~~A~~~~ 105 (944)
+-.....+-..|+.++..|+|.+|...|+.++. ..|.. ...+.+++.|++..|+|-++++..
T Consensus 174 Kmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~ 253 (329)
T KOG0545|consen 174 KMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHC 253 (329)
T ss_pred hhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHH
Confidence 334567788899999999999999999998864 24443 346788999999999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhH
Q 002273 106 SEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPA 152 (944)
Q Consensus 106 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 152 (944)
...+..+|.+..+++..|.+....-+..+|...|.++++++|.-...
T Consensus 254 seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasv 300 (329)
T KOG0545|consen 254 SEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASV 300 (329)
T ss_pred HHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHH
Confidence 99999999999999999999999999999999999999999985443
No 338
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.65 E-value=0.021 Score=63.48 Aligned_cols=138 Identities=13% Similarity=0.198 Sum_probs=101.2
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-C-C----
Q 002273 320 WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNP----HCAEACNNLGVIYKDRDNLDKAVECYQMALSIK-P-N---- 389 (944)
Q Consensus 320 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p-~---- 389 (944)
......+...+.+..+.|+++.|...+.++...++ ..+.+.+..+.++...|+..+|+..++..++.. . .
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~ 222 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSI 222 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccc
Confidence 34567788888999999999999988888887642 246778888888889999999998888877711 0 0
Q ss_pred ----------------------------CHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002273 390 ----------------------------FSQSLNNLGVVYTVQ------GKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 435 (944)
Q Consensus 390 ----------------------------~~~~~~~la~~~~~~------g~~~~A~~~l~~al~~~p~~~~a~~~la~~~ 435 (944)
...++..+|...... +..++++..|+++++.+|+...+|+.+|..+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 223 SNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred cHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 123566666666666 7888889999999999998888888888776
Q ss_pred HHcCC-----------------HHHHHHHHHHHHhhCCC
Q 002273 436 RDAGS-----------------ISLAIDAYEQCLKIDPD 457 (944)
Q Consensus 436 ~~~g~-----------------~~eA~~~~~~al~l~P~ 457 (944)
...=+ ...|+..|-+++...++
T Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 303 DKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred HHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 54421 13366666667766666
No 339
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.64 E-value=0.029 Score=62.38 Aligned_cols=189 Identities=12% Similarity=0.046 Sum_probs=106.8
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--------CCCHHHHHHHHHH
Q 002273 55 ANILRSRNKFVDALALYEIVLEKDS-GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD--------PQNACAHTHCGIL 125 (944)
Q Consensus 55 A~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~ 125 (944)
+......|+|+. +++.+...+ +..+..+..+......++++++....+++...- +.+....+..-..
T Consensus 5 ~eaaWrl~~Wd~----l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~ 80 (352)
T PF02259_consen 5 AEAAWRLGDWDL----LEEYLSQSNEDSPEYSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVK 80 (352)
T ss_pred HHHHHhcCChhh----HHHHHhhccCCChhHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 456677888888 333333332 234667777777778899998888888876531 1111111111111
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChH--HHHHHHHHHHh----hCCCCHHHHHHHHH
Q 002273 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ--DGIQKYYEALK----IDPHYAPAYYNLGV 199 (944)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~--~A~~~~~~al~----~~p~~~~~~~~la~ 199 (944)
+....+.+++..+....... ......+...+...-.. ...+++ +-+-.++..+- ........+...+.
T Consensus 81 lq~L~Elee~~~~~~~~~~~----~~~~~~l~~~W~~Rl~~--~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~ 154 (352)
T PF02259_consen 81 LQQLVELEEIIELKSNLSQN----PQDLKSLLKRWRSRLPN--MQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAK 154 (352)
T ss_pred HhHHHHHHHHHHHHHhhccc----HHHHHHHHHHHHHHHHH--hccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHH
Confidence 22223334444333211100 11111111111111000 011111 11111122221 14455778899999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002273 200 VYSELMQYDTALGCYEKAALERP----MYAEAYCNMGVIYKNRGDLESAIACYERCLA 253 (944)
Q Consensus 200 ~~~~~g~~~~A~~~~~~al~~~p----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 253 (944)
+..+.|+++.|...+.++....+ ..+.+.+..+.++...|+..+|+..++..+.
T Consensus 155 ~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 155 LARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999887552 2567888889999999999999999998887
No 340
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=97.64 E-value=0.00082 Score=76.49 Aligned_cols=139 Identities=17% Similarity=0.149 Sum_probs=90.8
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCC---------------H----HHHHHHHHHHHHcCCC
Q 002273 680 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCC---------------D----SVRHRFLSTLEQLGLE 740 (944)
Q Consensus 680 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~---------------~----~~~~~~~~~~~~~gi~ 740 (944)
.+.|+|.||++...++.+-++-.+.-|...|...||.+..+... + ..-+.+.++...
T Consensus 262 ~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~f~eR~~~---- 337 (481)
T PLN02992 262 NESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVRPPVDGSACSAYFSANGGETRDNTPEYLPEGFVSRTHD---- 337 (481)
T ss_pred CCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEeCCcccccccccccCcccccccchhhhCCHHHHHHhcC----
Confidence 35588999999999999999999999999999999998532100 0 112334443322
Q ss_pred CCcEEEccCccCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecC--CCcccccchhHHH-hhcCCccccc--
Q 002273 741 SLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVHAHNVGVSLL-TKVGLKHLIA-- 815 (944)
Q Consensus 741 ~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~--g~~~~~r~~~~~l-~~~gl~~~v~-- 815 (944)
..+++.++.| +.+.+.. ..+..|+ ..+|.+|++||+++|||+|++| ++.+. -+..+ ..+|+.-.+.
T Consensus 338 -rg~vv~~W~P-Q~~iL~h-~~vg~Fi---tH~G~nS~~Eal~~GVP~l~~P~~~DQ~~---na~~~~~~~g~gv~~~~~ 408 (481)
T PLN02992 338 -RGFVVPSWAP-QAEILAH-QAVGGFL---THCGWSSTLESVVGGVPMIAWPLFAEQNM---NAALLSDELGIAVRSDDP 408 (481)
T ss_pred -CCEEEeecCC-HHHHhCC-cccCeeE---ecCchhHHHHHHHcCCCEEecCccchhHH---HHHHHHHHhCeeEEecCC
Confidence 3467778877 4554432 2233344 3588889999999999999998 34332 23344 3556654332
Q ss_pred ---CCHHHHHHHHHHHhcC
Q 002273 816 ---KNEDEYVQLALQLASD 831 (944)
Q Consensus 816 ---~~~~~y~~~a~~l~~d 831 (944)
-+.++..+...++..+
T Consensus 409 ~~~~~~~~l~~av~~vm~~ 427 (481)
T PLN02992 409 KEVISRSKIEALVRKVMVE 427 (481)
T ss_pred CCcccHHHHHHHHHHHhcC
Confidence 2556666666677665
No 341
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.63 E-value=0.0048 Score=63.53 Aligned_cols=166 Identities=14% Similarity=0.046 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCChhHHhHHHHHHH
Q 002273 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSA-DPSYKPAAECLAIVLT 161 (944)
Q Consensus 83 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~ 161 (944)
+-....+.+....|++.+|-..+++.++..|.+.-++..--..++.+|+...-...+++++-. +++.+-. ..+.-
T Consensus 104 Ek~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~----sYv~G 179 (491)
T KOG2610|consen 104 EKRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCY----SYVHG 179 (491)
T ss_pred HhhhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHH----HHHHH
Confidence 444555667778899999999999999999999888888888899999999999999998877 5554432 22233
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHH
Q 002273 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY----AEAYCNMGVIYKN 237 (944)
Q Consensus 162 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~ 237 (944)
.++-.+...|-|++|.+.-++++++++.+..+...++.++...+++.++.+...+.-..-... .--|...+.++..
T Consensus 180 myaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE 259 (491)
T KOG2610|consen 180 MYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIE 259 (491)
T ss_pred HHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhc
Confidence 345567788999999999999999999999999999999999999999999888754332211 1235567888888
Q ss_pred cCCHHHHHHHHHHHH
Q 002273 238 RGDLESAIACYERCL 252 (944)
Q Consensus 238 ~g~~~~A~~~~~~al 252 (944)
.+.|+.|++.|.+-+
T Consensus 260 ~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 260 GAEYEKALEIYDREI 274 (491)
T ss_pred ccchhHHHHHHHHHH
Confidence 999999999998754
No 342
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.62 E-value=0.0014 Score=67.30 Aligned_cols=154 Identities=12% Similarity=-0.044 Sum_probs=122.1
Q ss_pred hhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-CCCC---HHHHHHHHHHHHHCCCHH
Q 002273 299 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF-NPHC---AEACNNLGVIYKDRDNLD 374 (944)
Q Consensus 299 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~---~~~~~~la~~~~~~g~~~ 374 (944)
+...|++.+|-...++.++..|.+.-++..--.+++.+|+.+.-...+++.+.. +++. ..+.-.++..+.+.|-|+
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 334677788888899999999998888888888889999988888888888877 6665 445556777788899999
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002273 375 KAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY----AEAYNNLGVLYRDAGSISLAIDAYEQ 450 (944)
Q Consensus 375 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~----~~a~~~la~~~~~~g~~~eA~~~~~~ 450 (944)
+|.+.-++++++++.+.-+...++.++...|++.++.++..+--..-... ..-|...+.++...+.|+.|++.|.+
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 99999999999999999999999999999999999998887654322111 22345567788888899999999876
Q ss_pred HH
Q 002273 451 CL 452 (944)
Q Consensus 451 al 452 (944)
-+
T Consensus 273 ei 274 (491)
T KOG2610|consen 273 EI 274 (491)
T ss_pred HH
Confidence 44
No 343
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.60 E-value=0.015 Score=62.93 Aligned_cols=127 Identities=12% Similarity=0.030 Sum_probs=93.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHHhCCCcHHH
Q 002273 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALE----RPMYAEAYCNMGVIYKN---RGDLESAIACYER-CLAVSPNFEIA 261 (944)
Q Consensus 190 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~-al~~~p~~~~~ 261 (944)
.+++..++-..|....+|+.-+++.+.+-.. -++...+.+.+|.++.+ .|+.++|+..+.. .....+.+++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 4567778888899999999999999987666 44567788889999999 9999999999999 55556678888
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 002273 262 KNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK 338 (944)
Q Consensus 262 ~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 338 (944)
+..+|.+|.++-... ........++|+..|.++.+.+|+ ...-.+++.++...|.
T Consensus 220 ~gL~GRIyKD~~~~s---------------------~~~d~~~ldkAi~~Y~kgFe~~~~-~Y~GIN~AtLL~~~g~ 274 (374)
T PF13281_consen 220 LGLLGRIYKDLFLES---------------------NFTDRESLDKAIEWYRKGFEIEPD-YYSGINAATLLMLAGH 274 (374)
T ss_pred HHHHHHHHHHHHHHc---------------------CccchHHHHHHHHHHHHHHcCCcc-ccchHHHHHHHHHcCC
Confidence 888888887653220 011122368888888888888854 3444555666666654
No 344
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.58 E-value=0.00015 Score=52.80 Aligned_cols=40 Identities=28% Similarity=0.450 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 002273 393 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLG 432 (944)
Q Consensus 393 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la 432 (944)
++..+|.+|...|++++|++.|+++++.+|+++.++..+|
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 3444444444444444444444444444444444444443
No 345
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=97.58 E-value=0.0018 Score=74.97 Aligned_cols=161 Identities=15% Similarity=0.144 Sum_probs=107.2
Q ss_pred CeEEEecCCCC---cCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHH
Q 002273 682 FITFGSFNNLA---KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 758 (944)
Q Consensus 682 ~~~f~~~~~~~---K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 758 (944)
.++|.+|+... +..++.++...+.+.+.|.-++|-.+... .. .++ +++|.+.++.| +.+.|
T Consensus 297 g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~~-----~~--------~~~-p~Nv~i~~w~P-q~~lL- 360 (507)
T PHA03392 297 GVVYVSFGSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGEV-----EA--------INL-PANVLTQKWFP-QRAVL- 360 (507)
T ss_pred cEEEEECCCCCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCCc-----Cc--------ccC-CCceEEecCCC-HHHHh-
Confidence 36677777654 57889999999999999975555433221 00 234 68999999987 55555
Q ss_pred hcccccEEecCCCCCCcccHHHhhhcCCcEEecCC--CcccccchhHHHhhcCCccccc---CCHHHHHHHHHHHhcCHH
Q 002273 759 AYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG--SVHAHNVGVSLLTKVGLKHLIA---KNEDEYVQLALQLASDVT 833 (944)
Q Consensus 759 ~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g--~~~~~r~~~~~l~~~gl~~~v~---~~~~~y~~~a~~l~~d~~ 833 (944)
....+|+|+ ..+|..|+.||++.|||+|.+|- +.+ .-+..+...|+...+- -+.++..+...++.+|+.
T Consensus 361 ~hp~v~~fI---tHGG~~s~~Eal~~GvP~v~iP~~~DQ~---~Na~rv~~~G~G~~l~~~~~t~~~l~~ai~~vl~~~~ 434 (507)
T PHA03392 361 KHKNVKAFV---TQGGVQSTDEAIDALVPMVGLPMMGDQF---YNTNKYVELGIGRALDTVTVSAAQLVLAIVDVIENPK 434 (507)
T ss_pred cCCCCCEEE---ecCCcccHHHHHHcCCCEEECCCCccHH---HHHHHHHHcCcEEEeccCCcCHHHHHHHHHHHhCCHH
Confidence 336688887 35888899999999999999984 433 2334445667765442 267887777778999987
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 002273 834 ALANLRMSLRDLMSKSPVCDGQNFALGLESTY 865 (944)
Q Consensus 834 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~ 865 (944)
.+++.++ +++.+...|.=-.++.+..+|.+.
T Consensus 435 y~~~a~~-ls~~~~~~p~~~~~~av~~iE~v~ 465 (507)
T PHA03392 435 YRKNLKE-LRHLIRHQPMTPLHKAIWYTEHVI 465 (507)
T ss_pred HHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHH
Confidence 6666544 444455455433456666666543
No 346
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=97.55 E-value=0.0024 Score=69.81 Aligned_cols=243 Identities=15% Similarity=0.145 Sum_probs=143.0
Q ss_pred HHHHHHhHhCCccEEEecCCCCCCCchhhhccCCcceeee----cccCCCCCCCCCccEEEecCCCCCcccccccccceE
Q 002273 579 KKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVT----WIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELI 654 (944)
Q Consensus 579 ~~~a~~i~~d~idilvdl~g~t~~~~~~~~a~r~ApvQ~~----~~G~p~t~g~~~~Dy~i~d~~~~p~~~~~~~~e~~~ 654 (944)
.++-+.|+..++|++|=..|+-...-.--.....=||=+. ..|--+-...+..+.+.+.. .. .......|+..
T Consensus 81 ~~a~~il~~~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ihEqn~~~G~ank~~~~~a~~V~~~f-~~--~~~~~~~~~~~ 157 (357)
T COG0707 81 LQARKILKKLKPDVVIGTGGYVSGPVGIAAKLLGIPVIIHEQNAVPGLANKILSKFAKKVASAF-PK--LEAGVKPENVV 157 (357)
T ss_pred HHHHHHHHHcCCCEEEecCCccccHHHHHHHhCCCCEEEEecCCCcchhHHHhHHhhceeeecc-cc--ccccCCCCceE
Confidence 5788899999999999888887633222222223444222 12222222223344444321 11 01111112222
Q ss_pred EcCCCccc--cCCCCCCCCCCCCCCCCCCCeEEEecC---CCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHH
Q 002273 655 RLPECFLC--YTPSPEAGPVCPTPALTNGFITFGSFN---NLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHR 729 (944)
Q Consensus 655 ~lp~~~~~--~~~~~~~~~~~~~~~~~~~~~~f~~~~---~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~ 729 (944)
..-.. +. +.. ...+..+..+.. +..|...+. -..+++..+-+++..... +-.++..++. ....+
T Consensus 158 ~tG~P-vr~~~~~--~~~~~~~~~~~~-~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~---~~~v~~~~G~----~~~~~ 226 (357)
T COG0707 158 VTGIP-VRPEFEE--LPAAEVRKDGRL-DKKTILVTGGSQGAKALNDLVPEALAKLAN---RIQVIHQTGK----NDLEE 226 (357)
T ss_pred EecCc-ccHHhhc--cchhhhhhhccC-CCcEEEEECCcchhHHHHHHHHHHHHHhhh---CeEEEEEcCc----chHHH
Confidence 11110 00 000 000000111111 444444443 335566555555554443 3455555443 22567
Q ss_pred HHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcc---cccchhHHH
Q 002273 730 FLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVH---AHNVGVSLL 805 (944)
Q Consensus 730 ~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~---~~r~~~~~l 805 (944)
+.....+.|+ +.+.|. .++....|..+|+++ . +|++|..|.+++|+|+|-.|=..- .....|-.|
T Consensus 227 ~~~~~~~~~~----~~v~~f---~~dm~~~~~~ADLvI----sRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l 295 (357)
T COG0707 227 LKSAYNELGV----VRVLPF---IDDMAALLAAADLVI----SRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFL 295 (357)
T ss_pred HHHHHhhcCc----EEEeeH---HhhHHHHHHhccEEE----eCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHH
Confidence 7777777887 666666 357888889999999 6 899999999999999998774333 455678889
Q ss_pred hhcCCcccccC---CHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Q 002273 806 TKVGLKHLIAK---NEDEYVQLALQLASDVTALANLRMSLRDLM 846 (944)
Q Consensus 806 ~~~gl~~~v~~---~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~ 846 (944)
...|..-++.+ +.+.+++...++.++++.+.++++..++..
T Consensus 296 ~~~gaa~~i~~~~lt~~~l~~~i~~l~~~~~~l~~m~~~a~~~~ 339 (357)
T COG0707 296 EKAGAALVIRQSELTPEKLAELILRLLSNPEKLKAMAENAKKLG 339 (357)
T ss_pred HhCCCEEEeccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 98898877754 468999999999999999999999988763
No 347
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.53 E-value=0.36 Score=57.17 Aligned_cols=240 Identities=13% Similarity=0.086 Sum_probs=156.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 002273 189 HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIA 268 (944)
Q Consensus 189 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 268 (944)
+.+.+|..+|....+.|...+|++.|-++ +++..|.....+..+.|+|++-+.++.-+-+.... +..-..+..+
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E-~~id~eLi~A 1175 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVRE-PYIDSELIFA 1175 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcC-ccchHHHHHH
Confidence 45789999999999999999999998875 56778888899999999999999998877665432 2233344455
Q ss_pred HHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q 002273 269 LTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYEL 348 (944)
Q Consensus 269 l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 348 (944)
|.+.++..+-+.+.. ..+..-.....+-+...+.|+.|.-+|... .-|..++..+..+|+|+.|...-++
T Consensus 1176 yAkt~rl~elE~fi~--gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~AVD~aRK 1245 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFIA--GPNVANIQQVGDRCFEEKMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGAVDAARK 1245 (1666)
T ss_pred HHHhchHHHHHHHhc--CCCchhHHHHhHHHhhhhhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 555554422222111 111111224455667778888887777643 3467788888888999988887777
Q ss_pred HHhhCC-----------C--------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002273 349 AFHFNP-----------H--------------CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 403 (944)
Q Consensus 349 al~~~p-----------~--------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 403 (944)
+-.... . .++-+-.+...|...|-+++-+..++.++.+...+...+..||.+|.+
T Consensus 1246 Ans~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1246 ANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred ccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHh
Confidence 643210 0 133444566777788888888888888888877777777788877765
Q ss_pred cCCHHHHHHHHHHHHHhC--C------CCHHHHHHHHHHHHHcCCHHHHH
Q 002273 404 QGKMDAAAEMIEKAIAAN--P------TYAEAYNNLGVLYRDAGSISLAI 445 (944)
Q Consensus 404 ~g~~~~A~~~l~~al~~~--p------~~~~a~~~la~~~~~~g~~~eA~ 445 (944)
- ++++-.+.++-....- | +....|..+..+|.+-..|+.|.
T Consensus 1326 y-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1326 Y-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred c-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 3 4455555444332210 1 12345556666666666666554
No 348
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=97.51 E-value=0.0036 Score=71.04 Aligned_cols=168 Identities=14% Similarity=0.080 Sum_probs=111.8
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCC----ceEEEecCCCCC-----HHHHHHHHHHHHH-------cCCCCC
Q 002273 681 GFITFGSFNNL--AKITPKVLQVWARILCAVPN----SRLVVKCKPFCC-----DSVRHRFLSTLEQ-------LGLESL 742 (944)
Q Consensus 681 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~----~~l~~~~~~~~~-----~~~~~~~~~~~~~-------~gi~~~ 742 (944)
|..++.+..|+ .|..+.-+.++.++|+..|+ .+|++++.+..+ ...+..+.+...+ .|.. .
T Consensus 284 ~~kiIl~VDRLDy~KGI~~kl~Afe~~L~~~Pe~~gkv~Lvqi~~psr~~v~~y~~l~~~v~~~v~~IN~~fg~~~~~-p 362 (487)
T TIGR02398 284 GVKLILSAERVDYTKGILEKLNAYERLLERRPELLGKVTLVTACVPAASGMTIYDELQGQIEQAVGRINGRFARIGWT-P 362 (487)
T ss_pred CceEEEEecccccccCHHHHHHHHHHHHHhCccccCceEEEEEeCCCcccchHHHHHHHHHHHHHHHHhhccCCCCCc-c
Confidence 44456677776 89999999999999999996 688888765422 2244444444433 3552 3
Q ss_pred cEEEccCccCcHHHHHhcccccEEecCCCCCC-cccHHHhhhcCC----cEEecCCCcccccchhHHHhhcCCcccc--c
Q 002273 743 RVDLLPLILLNHDHMQAYSLMDISLDTFPYAG-TTTTCESLYMGV----PCVTMAGSVHAHNVGVSLLTKVGLKHLI--A 815 (944)
Q Consensus 743 rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~~-~~t~~eal~~gv----Pvvt~~g~~~~~r~~~~~l~~~gl~~~v--~ 815 (944)
.+.|.+.++ .++..+.|+.+||+|.|+-+-| +.++.|.++++. |+|. |+.+++- ..+. .-++ .
T Consensus 363 v~~~~~~v~-~~el~alYr~ADV~lvT~lrDGmNLVa~Eyva~~~~~~GvLIL-------SefaGaa-~~l~-~AllVNP 432 (487)
T TIGR02398 363 LQFFTRSLP-YEEVSAWFAMADVMWITPLRDGLNLVAKEYVAAQGLLDGVLVL-------SEFAGAA-VELK-GALLTNP 432 (487)
T ss_pred EEEEcCCCC-HHHHHHHHHhCCEEEECccccccCcchhhHHhhhcCCCCCEEE-------eccccch-hhcC-CCEEECC
Confidence 455666666 7899999999999999998855 789999999988 6776 7776332 1111 1122 4
Q ss_pred CCHHHHHHHHHHHhcCH-HHHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 002273 816 KNEDEYVQLALQLASDV-TALANLRMSLRDLMSKSPVCDGQNFALGLE 862 (944)
Q Consensus 816 ~~~~~y~~~a~~l~~d~-~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e 862 (944)
.|.++..+...+-.+.+ +++++--+++++.+.+ +|...|++.+=
T Consensus 433 ~d~~~~A~ai~~AL~m~~~Er~~R~~~l~~~v~~---~d~~~W~~~fl 477 (487)
T TIGR02398 433 YDPVRMDETIYVALAMPKAEQQARMREMFDAVNY---YDVQRWADEFL 477 (487)
T ss_pred CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh---CCHHHHHHHHH
Confidence 57777766555555544 4555555556666543 46777666543
No 349
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.50 E-value=0.021 Score=61.92 Aligned_cols=179 Identities=12% Similarity=0.014 Sum_probs=128.1
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHH-HHcCCCChhH
Q 002273 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKL----DPQNACAHTHCGILYKD---EGRLVEAAESYHKA-LSADPSYKPA 152 (944)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~a-l~~~p~~~~~ 152 (944)
+++....+-.+|....+|+.-+++.+..-.+ -++...+.+.+|.++.+ .|+.++|+..+..+ ....+.+++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 4667778888899999999999988887666 45567788889999988 99999999999994 4555667777
Q ss_pred HhHHHHHHHHHHHH--HHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------Hh--
Q 002273 153 AECLAIVLTDLGTS--LKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA--------LE-- 220 (944)
Q Consensus 153 ~~~la~~~~~lg~~--~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~-- 220 (944)
....+.+|..+-.. .......++|+..|.++.+.+|+. ..-.+++.++...|.-.+....+++.. +.
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~-Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~ 298 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY-YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS 298 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc-cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc
Confidence 66667776665332 122345899999999999999653 444566666666665333332222221 11
Q ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH
Q 002273 221 --RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI 260 (944)
Q Consensus 221 --~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 260 (944)
.-.+...+..++.+..-.|++++|.+.++++++..|..-.
T Consensus 299 ~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~ 340 (374)
T PF13281_consen 299 LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWE 340 (374)
T ss_pred ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchh
Confidence 1224455566778888899999999999999999877543
No 350
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.48 E-value=0.00025 Score=51.55 Aligned_cols=42 Identities=21% Similarity=0.264 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 002273 358 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 399 (944)
Q Consensus 358 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 399 (944)
.++..+|..|...|++++|++.|+++++.+|+++.++..+|.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 345556666666666666666666666666666666665553
No 351
>PLN03004 UDP-glycosyltransferase
Probab=97.46 E-value=0.0015 Score=73.86 Aligned_cols=138 Identities=14% Similarity=0.111 Sum_probs=90.5
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCC-------HH-HHHHHHHHHHHcCCCCCcEEEccCcc
Q 002273 680 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCC-------DS-VRHRFLSTLEQLGLESLRVDLLPLIL 751 (944)
Q Consensus 680 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~-------~~-~~~~~~~~~~~~gi~~~rv~~~~~~~ 751 (944)
.+.|+|.||++...++++-++-.+.-|...|...||.+..+... .. +.+.+.++. ....+++.++.|
T Consensus 269 ~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~~~~~~~~~~~~~~~lp~gf~er~-----~~~g~~v~~W~P 343 (451)
T PLN03004 269 EKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRNPPELEKTELDLKSLLPEGFLSRT-----EDKGMVVKSWAP 343 (451)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCccccccccchhhhCChHHHHhc-----cCCcEEEEeeCC
Confidence 35688999999999999999999999999999999988643110 00 112333332 224567778877
Q ss_pred CcHHHHHhcccccE--EecCCCCCCcccHHHhhhcCCcEEecCC--CcccccchhHHHh-hcCCccccc------CCHHH
Q 002273 752 LNHDHMQAYSLMDI--SLDTFPYAGTTTTCESLYMGVPCVTMAG--SVHAHNVGVSLLT-KVGLKHLIA------KNEDE 820 (944)
Q Consensus 752 ~~~~~~~~~~~~Di--~Ld~~~~~~~~t~~eal~~gvPvvt~~g--~~~~~r~~~~~l~-~~gl~~~v~------~~~~~ 820 (944)
+.+.| ...+| |+ ..+|-+|++||+++|||+|++|- +.+ ..+..+. .+|+.--+. -+.++
T Consensus 344 -Q~~iL---~H~~v~~Fv---TH~G~nS~lEal~~GVP~v~~P~~~DQ~---~na~~~~~~~g~g~~l~~~~~~~~~~e~ 413 (451)
T PLN03004 344 -QVPVL---NHKAVGGFV---THCGWNSILEAVCAGVPMVAWPLYAEQR---FNRVMIVDEIKIAISMNESETGFVSSTE 413 (451)
T ss_pred -HHHHh---CCCccceEe---ccCcchHHHHHHHcCCCEEeccccccch---hhHHHHHHHhCceEEecCCcCCccCHHH
Confidence 55554 44555 65 34888899999999999999983 332 2333443 345543332 25566
Q ss_pred HHHHHHHHhcCH
Q 002273 821 YVQLALQLASDV 832 (944)
Q Consensus 821 y~~~a~~l~~d~ 832 (944)
-.+...++..|+
T Consensus 414 l~~av~~vm~~~ 425 (451)
T PLN03004 414 VEKRVQEIIGEC 425 (451)
T ss_pred HHHHHHHHhcCH
Confidence 666666666664
No 352
>PLN02764 glycosyltransferase family protein
Probab=97.45 E-value=0.0023 Score=72.28 Aligned_cols=181 Identities=9% Similarity=0.023 Sum_probs=107.8
Q ss_pred CCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCC----HHHHHHHHHHHHHcCCCCCcEEEccCccCcH
Q 002273 679 TNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCC----DSVRHRFLSTLEQLGLESLRVDLLPLILLNH 754 (944)
Q Consensus 679 ~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~----~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~ 754 (944)
+.+.|+|.||.+...+++.-+.-.+.=|...-..-+|++..+... ..+.+.+..+....| +++.++.| +.
T Consensus 255 ~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r~~~~~~~~~~~lp~~f~~r~~grG-----~v~~~W~P-Q~ 328 (453)
T PLN02764 255 EPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVKPPRGSSTIQEALPEGFEERVKGRG-----VVWGGWVQ-QP 328 (453)
T ss_pred CCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEeCCCCCcchhhhCCcchHhhhccCC-----cEEeCCCC-HH
Confidence 456689999999989887766655555556666688888643211 112234444433333 45667877 55
Q ss_pred HHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecCC--CcccccchhHHH-hhcCCccccc------CCHHHHHHHH
Q 002273 755 DHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG--SVHAHNVGVSLL-TKVGLKHLIA------KNEDEYVQLA 825 (944)
Q Consensus 755 ~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g--~~~~~r~~~~~l-~~~gl~~~v~------~~~~~y~~~a 825 (944)
+.|+ ...++.|+ ..+|.+|++||+++|||+|++|- +.+ .-+.++ ..+|+.--+. -+.++-.+..
T Consensus 329 ~vL~-h~~v~~Fv---tH~G~nS~~Eal~~GVP~l~~P~~~DQ~---~na~~l~~~~g~gv~~~~~~~~~~~~e~i~~av 401 (453)
T PLN02764 329 LILS-HPSVGCFV---SHCGFGSMWESLLSDCQIVLVPQLGDQV---LNTRLLSDELKVSVEVAREETGWFSKESLRDAI 401 (453)
T ss_pred HHhc-CcccCeEE---ecCCchHHHHHHHcCCCEEeCCcccchH---HHHHHHHHHhceEEEeccccCCccCHHHHHHHH
Confidence 5553 35566676 35888999999999999999984 332 233344 3344432121 2667777777
Q ss_pred HHHhcCH-HHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHhcC
Q 002273 826 LQLASDV-TALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRYCKG 875 (944)
Q Consensus 826 ~~l~~d~-~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 875 (944)
.++..+. +..+++|++.++..... .+.-..-+.+++..+. |.+++.+
T Consensus 402 ~~vm~~~~~~g~~~r~~a~~~~~~~--~~~GSS~~~l~~lv~~-~~~~~~~ 449 (453)
T PLN02764 402 NSVMKRDSEIGNLVKKNHTKWRETL--ASPGLLTGYVDNFIES-LQDLVSG 449 (453)
T ss_pred HHHhcCCchhHHHHHHHHHHHHHHH--HhcCCHHHHHHHHHHH-HHHhccc
Confidence 7777665 45566666666533222 1222334466665544 5556654
No 353
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.45 E-value=0.00019 Score=77.89 Aligned_cols=108 Identities=19% Similarity=0.112 Sum_probs=100.4
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 002273 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (944)
Q Consensus 48 ~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (944)
+..+-..|..++..++|+.|+..|.++++++|+.+..+-..+..+.+.+++..|+..+.++++.+|....+|+..|.+..
T Consensus 4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m 83 (476)
T KOG0376|consen 4 AEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVM 83 (476)
T ss_pred hhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHH
Confidence 34455678889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCChhHHhH
Q 002273 128 DEGRLVEAAESYHKALSADPSYKPAAEC 155 (944)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~p~~~~~~~~ 155 (944)
..+++.+|...|++...+.|+.+.+...
T Consensus 84 ~l~~~~~A~~~l~~~~~l~Pnd~~~~r~ 111 (476)
T KOG0376|consen 84 ALGEFKKALLDLEKVKKLAPNDPDATRK 111 (476)
T ss_pred hHHHHHHHHHHHHHhhhcCcCcHHHHHH
Confidence 9999999999999999999999876433
No 354
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.45 E-value=0.0025 Score=67.90 Aligned_cols=136 Identities=11% Similarity=0.057 Sum_probs=80.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 002273 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQM-QNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKD 128 (944)
Q Consensus 50 ~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 128 (944)
.|+...+...+.+..+.|..+|+++.+..+.....|...|...+. .++.+.|.+.|+.+++..|.+...|......+..
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 345555666666667777777777765444456666666666555 3444447777777777777777777777777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 002273 129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH 189 (944)
Q Consensus 129 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 189 (944)
.|+.+.|...|++++..-+..... ..+|......-...|+.+...++.+++.+..|+
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~----~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQS----KKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHC----HHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred hCcHHHHHHHHHHHHHhcCchhHH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 777777777777777665543311 112333444444556666666666666655554
No 355
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.43 E-value=0.00015 Score=49.20 Aligned_cols=32 Identities=53% Similarity=0.701 Sum_probs=18.9
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002273 414 IEKAIAANPTYAEAYNNLGVLYRDAGSISLAI 445 (944)
Q Consensus 414 l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~ 445 (944)
|+++++++|+++.+|++||.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45555666666666666666666666655554
No 356
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=97.41 E-value=0.00029 Score=76.44 Aligned_cols=113 Identities=19% Similarity=0.210 Sum_probs=102.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 002273 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239 (944)
Q Consensus 160 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 239 (944)
+-..+......+.++.|+..|.++++++|+++..+-+.+..+.+.+++..|+.-+.++++.+|....+|+..|......+
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 44556667778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Q 002273 240 DLESAIACYERCLAVSPNFEIAKNNMAIALTDL 272 (944)
Q Consensus 240 ~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~ 272 (944)
++.+|+..|++...+.|+++.+...+..+-...
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~v 119 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKIDECNKIV 119 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHH
Confidence 999999999999999999998877666554433
No 357
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.41 E-value=0.0052 Score=63.47 Aligned_cols=101 Identities=21% Similarity=0.163 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 002273 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH----YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNM 231 (944)
Q Consensus 156 la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 231 (944)
.|.-+..-|+-|++..+|..|+..|.+.++..-. ++..|.+.+-+....|+|..|+....+++..+|.+..+++.-
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 4666788899999999999999999999988433 466788999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC
Q 002273 232 GVIYKNRGDLESAIACYERCLAVSP 256 (944)
Q Consensus 232 a~~~~~~g~~~~A~~~~~~al~~~p 256 (944)
+.+++.+.++.+|....+..+.++.
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 9999999999999999988866653
No 358
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=97.40 E-value=0.32 Score=53.51 Aligned_cols=87 Identities=11% Similarity=0.066 Sum_probs=56.5
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcC
Q 002273 68 LALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGR-LVEAAESYHKALSAD 146 (944)
Q Consensus 68 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~ 146 (944)
..+|+.++...+.++..|........+.+.+.+--..|.+++..+|+++..|...|.-.+.-+. .+.|...+.++++.+
T Consensus 91 v~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n 170 (568)
T KOG2396|consen 91 VFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN 170 (568)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC
Confidence 4556666666666666666666666666666666666777777777777766666665555554 666666677777777
Q ss_pred CCChhHHh
Q 002273 147 PSYKPAAE 154 (944)
Q Consensus 147 p~~~~~~~ 154 (944)
|+.+..+.
T Consensus 171 pdsp~Lw~ 178 (568)
T KOG2396|consen 171 PDSPKLWK 178 (568)
T ss_pred CCChHHHH
Confidence 66665543
No 359
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=97.39 E-value=0.0045 Score=70.34 Aligned_cols=139 Identities=16% Similarity=0.069 Sum_probs=90.7
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCC-CHH----HHHHHHHHHHHcCCCCCcEEEccCccCcH
Q 002273 680 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFC-CDS----VRHRFLSTLEQLGLESLRVDLLPLILLNH 754 (944)
Q Consensus 680 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~-~~~----~~~~~~~~~~~~gi~~~rv~~~~~~~~~~ 754 (944)
.+.|+|.||.+..+++++.+.-.+.-|...+...||.+..+.. ++. +...+.++ + .+|..+.++.| +.
T Consensus 263 ~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~~~~~~~~~~~lp~~f~er-----~-~~~g~v~~w~P-Q~ 335 (451)
T PLN02410 263 KNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPGSVRGSEWIESLPKEFSKI-----I-SGRGYIVKWAP-QK 335 (451)
T ss_pred CCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccCcccccchhhcCChhHHHh-----c-cCCeEEEccCC-HH
Confidence 4568999999999999999999999999999999998863311 111 12233332 2 46777778887 55
Q ss_pred HHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecCC--CcccccchhHHHhhc-CCcccc--cCCHHHHHHHHHHHh
Q 002273 755 DHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG--SVHAHNVGVSLLTKV-GLKHLI--AKNEDEYVQLALQLA 829 (944)
Q Consensus 755 ~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g--~~~~~r~~~~~l~~~-gl~~~v--~~~~~~y~~~a~~l~ 829 (944)
+.|. ...+..|+ ..+|-+|++||+++|||+|++|- +.+ ..+-.+... |+.--+ .-+.++..+...++.
T Consensus 336 ~iL~-h~~v~~fv---tH~G~nS~~Ea~~~GvP~l~~P~~~DQ~---~na~~~~~~~~~G~~~~~~~~~~~v~~av~~lm 408 (451)
T PLN02410 336 EVLS-HPAVGGFW---SHCGWNSTLESIGEGVPMICKPFSSDQK---VNARYLECVWKIGIQVEGDLDRGAVERAVKRLM 408 (451)
T ss_pred HHhC-CCccCeee---ecCchhHHHHHHHcCCCEEeccccccCH---HHHHHHHHHhCeeEEeCCcccHHHHHHHHHHHH
Confidence 5553 34455566 35788899999999999999984 432 223333222 333111 125566666666776
Q ss_pred cCH
Q 002273 830 SDV 832 (944)
Q Consensus 830 ~d~ 832 (944)
.|+
T Consensus 409 ~~~ 411 (451)
T PLN02410 409 VEE 411 (451)
T ss_pred cCC
Confidence 664
No 360
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=97.38 E-value=0.0036 Score=71.72 Aligned_cols=103 Identities=13% Similarity=0.100 Sum_probs=74.1
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCC----HHHHHHHHHHHHHcCCCCCcEEEccCccCcHH
Q 002273 680 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCC----DSVRHRFLSTLEQLGLESLRVDLLPLILLNHD 755 (944)
Q Consensus 680 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~----~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~ 755 (944)
.+.|+|.||+....++++.++-.+.-|...+...||.++.+... ......+.++.. ...+++.++.| +.+
T Consensus 282 ~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~-----~~g~~v~~w~P-Q~~ 355 (477)
T PLN02863 282 DHKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFIWCVKEPVNEESDYSNIPSGFEDRVA-----GRGLVIRGWAP-QVA 355 (477)
T ss_pred CCceEEEEeeceecCCHHHHHHHHHHHHhCCCcEEEEECCCcccccchhhCCHHHHHHhc-----cCCEEecCCCC-HHH
Confidence 34588999999999999999999999999999999988643211 011223333322 34567778887 455
Q ss_pred HHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecC
Q 002273 756 HMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA 792 (944)
Q Consensus 756 ~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~ 792 (944)
.|. ...+++|+ ..+|-+|++||+++|||+|++|
T Consensus 356 vL~-h~~v~~fv---tH~G~nS~~Eal~~GvP~l~~P 388 (477)
T PLN02863 356 ILS-HRAVGAFL---THCGWNSVLEGLVAGVPMLAWP 388 (477)
T ss_pred Hhc-CCCcCeEE---ecCCchHHHHHHHcCCCEEeCC
Confidence 553 24577777 3588889999999999999998
No 361
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.37 E-value=0.022 Score=58.51 Aligned_cols=160 Identities=16% Similarity=0.062 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHH
Q 002273 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTD 162 (944)
Q Consensus 83 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 162 (944)
+.-+..+.-....|++.+|...|..++...|++..+...++.+|...|+.+.|...+...-....+.. .. . ......
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~-~~-~-l~a~i~ 211 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKA-AH-G-LQAQIE 211 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhH-HH-H-HHHHHH
Confidence 34445555566677777777777777777777777777777777777777776666654322211111 00 0 001111
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCC
Q 002273 163 LGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM--YAEAYCNMGVIYKNRGD 240 (944)
Q Consensus 163 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~ 240 (944)
+ +.+.....+. ..+++.+..+|++.++.+.+|..+...|+.++|++.+-..++.+.. +..+...+-.++...|.
T Consensus 212 l---l~qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 212 L---LEQAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGP 287 (304)
T ss_pred H---HHHHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCC
Confidence 1 1111222111 2234455678999999999999999999999999988888877543 44555556666665554
Q ss_pred HHHHHHHHH
Q 002273 241 LESAIACYE 249 (944)
Q Consensus 241 ~~~A~~~~~ 249 (944)
-+.+...++
T Consensus 288 ~Dp~~~~~R 296 (304)
T COG3118 288 ADPLVLAYR 296 (304)
T ss_pred CCHHHHHHH
Confidence 444443333
No 362
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.0085 Score=61.49 Aligned_cols=160 Identities=22% Similarity=0.221 Sum_probs=112.1
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHH--H
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG--I 124 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la--~ 124 (944)
..+..+..+......|++.+|...|+.++...|++.++...++.|+...|+.+.|...+...-....+.. .....+ .
T Consensus 133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~-~~~l~a~i~ 211 (304)
T COG3118 133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKA-AHGLQAQIE 211 (304)
T ss_pred HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhH-HHHHHHHHH
Confidence 4455677788999999999999999999999999999999999999999999999888776433222221 111111 2
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--CHHHHHHHHHHHH
Q 002273 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH--YAPAYYNLGVVYS 202 (944)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~ 202 (944)
.+.+.....+ ...+++.+..+|++.+. -+.++..+...|+.++|++.+-..++.+-. +..+...+-.++.
T Consensus 212 ll~qaa~~~~-~~~l~~~~aadPdd~~a-------a~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~ 283 (304)
T COG3118 212 LLEQAAATPE-IQDLQRRLAADPDDVEA-------ALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFE 283 (304)
T ss_pred HHHHHhcCCC-HHHHHHHHHhCCCCHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHH
Confidence 3333333222 23455667789998876 566677777889999999999998887543 4556666666666
Q ss_pred HcCCHHHHHHHHH
Q 002273 203 ELMQYDTALGCYE 215 (944)
Q Consensus 203 ~~g~~~~A~~~~~ 215 (944)
..|.-+.+...++
T Consensus 284 ~~g~~Dp~~~~~R 296 (304)
T COG3118 284 AFGPADPLVLAYR 296 (304)
T ss_pred hcCCCCHHHHHHH
Confidence 6654444433333
No 363
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.34 E-value=0.22 Score=53.14 Aligned_cols=161 Identities=12% Similarity=-0.027 Sum_probs=101.7
Q ss_pred HHhCCHHHHHHHHHHHHhcC----CCC----HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHc-------CCCChhHHhHH
Q 002273 93 QMQNMGRLAFDSFSEAVKLD----PQN----ACAHTHCGILYKDEG-RLVEAAESYHKALSA-------DPSYKPAAECL 156 (944)
Q Consensus 93 ~~~g~~~~A~~~~~~al~~~----p~~----~~~~~~la~~~~~~g-~~~~A~~~~~~al~~-------~p~~~~~~~~l 156 (944)
.++|+++.|..++.|+-... |+. ...++..|......+ ++++|..+++++.++ .....+.....
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 35566666666666665433 221 234566677777777 888888888777766 23344555667
Q ss_pred HHHHHHHHHHHHHcCChH---HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHH
Q 002273 157 AIVLTDLGTSLKLAGNTQ---DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM---YAEAYCN 230 (944)
Q Consensus 157 a~~~~~lg~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~ 230 (944)
..++..++.++...+.++ +|....+.+-...|+.+..+...-.++...++.+++.+.+.+++..-+- +.+....
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~ 163 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHH
Confidence 778888999998877765 4555555666667887888866666676789999999999999886542 2222222
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Q 002273 231 MGVIYKNRGDLESAIACYERCLAV 254 (944)
Q Consensus 231 la~~~~~~g~~~~A~~~~~~al~~ 254 (944)
....+.. .....|...+...+..
T Consensus 164 ~i~~l~~-~~~~~a~~~ld~~l~~ 186 (278)
T PF08631_consen 164 HIKQLAE-KSPELAAFCLDYLLLN 186 (278)
T ss_pred HHHHHHh-hCcHHHHHHHHHHHHH
Confidence 2222222 3345566666665543
No 364
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.34 E-value=0.00036 Score=47.49 Aligned_cols=33 Identities=42% Similarity=0.753 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002273 426 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 458 (944)
Q Consensus 426 ~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~ 458 (944)
.+|+++|.+|..+|++++|+.+|+++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 567777777777777777777777777777753
No 365
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.33 E-value=0.00022 Score=48.34 Aligned_cols=32 Identities=34% Similarity=0.615 Sum_probs=19.7
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002273 380 YQMALSIKPNFSQSLNNLGVVYTVQGKMDAAA 411 (944)
Q Consensus 380 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 411 (944)
|+++++++|+++.+++++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 55666666666666666666666666666554
No 366
>PLN03007 UDP-glucosyltransferase family protein
Probab=97.33 E-value=0.0026 Score=73.43 Aligned_cols=107 Identities=14% Similarity=0.022 Sum_probs=70.8
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCC-H---HHHHHHHHHHHHcCCCCCcEEEccCccCcHH
Q 002273 680 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCC-D---SVRHRFLSTLEQLGLESLRVDLLPLILLNHD 755 (944)
Q Consensus 680 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~-~---~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~ 755 (944)
++.|+|.||.+...+++.-+.-.+.-|...+...||.++.+... + ...+.+.++. ....|++.++.| +.+
T Consensus 284 ~~svvyvsfGS~~~~~~~~~~~~~~~l~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~-----~~~g~~v~~w~P-Q~~ 357 (482)
T PLN03007 284 PDSVIYLSFGSVASFKNEQLFEIAAGLEGSGQNFIWVVRKNENQGEKEEWLPEGFEERT-----KGKGLIIRGWAP-QVL 357 (482)
T ss_pred CCceEEEeecCCcCCCHHHHHHHHHHHHHCCCCEEEEEecCCcccchhhcCCHHHHHHh-----ccCCEEEecCCC-HHH
Confidence 45578999999888877766666677888888889988653211 0 1122333222 145678888887 455
Q ss_pred HHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecC--CCcc
Q 002273 756 HMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVH 796 (944)
Q Consensus 756 ~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~--g~~~ 796 (944)
.|.. ..+..|+ ..+|-+|++||+++|||+|++| ++.+
T Consensus 358 iL~h-~~v~~fv---tH~G~nS~~Eal~~GVP~v~~P~~~DQ~ 396 (482)
T PLN03007 358 ILDH-QATGGFV---THCGWNSLLEGVAAGLPMVTWPVGAEQF 396 (482)
T ss_pred Hhcc-Cccceee---ecCcchHHHHHHHcCCCeeeccchhhhh
Confidence 4432 2233455 3578889999999999999998 4443
No 367
>PLN02167 UDP-glycosyltransferase family protein
Probab=97.33 E-value=0.0045 Score=71.21 Aligned_cols=139 Identities=17% Similarity=0.165 Sum_probs=87.1
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCC-----HHHHHHHHHHHHHcCCCCCcEEEccCccCcH
Q 002273 680 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCC-----DSVRHRFLSTLEQLGLESLRVDLLPLILLNH 754 (944)
Q Consensus 680 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~-----~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~ 754 (944)
.+.|+|.||++...++++.+.-.+.-|...+...||.++.+... ....+.+.++. .+|..+.++.| +.
T Consensus 279 ~~svvyvsfGS~~~~~~~~~~ela~~l~~~~~~flw~~~~~~~~~~~~~~~lp~~~~er~------~~rg~v~~w~P-Q~ 351 (475)
T PLN02167 279 ESSVVFLCFGSLGSLPAPQIKEIAQALELVGCRFLWSIRTNPAEYASPYEPLPEGFMDRV------MGRGLVCGWAP-QV 351 (475)
T ss_pred CCceEEEeecccccCCHHHHHHHHHHHHhCCCcEEEEEecCcccccchhhhCChHHHHHh------ccCeeeeccCC-HH
Confidence 34588999998888899999999999999999888887643211 01122333332 24556668876 44
Q ss_pred HHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecC--CCcccccchhHHHhhcCCccccc----------CCHHHHH
Q 002273 755 DHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVHAHNVGVSLLTKVGLKHLIA----------KNEDEYV 822 (944)
Q Consensus 755 ~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~--g~~~~~r~~~~~l~~~gl~~~v~----------~~~~~y~ 822 (944)
+.| ....++.|| ..+|-+|++||+++|||+|++| ++.+.. +.-++..+|..--+. -+.++..
T Consensus 352 ~iL-~h~~vg~fv---tH~G~nS~~Eal~~GvP~l~~P~~~DQ~~n--a~~~~~~~g~g~~~~~~~~~~~~~~~~~~~l~ 425 (475)
T PLN02167 352 EIL-AHKAIGGFV---SHCGWNSVLESLWFGVPIATWPMYAEQQLN--AFTMVKELGLAVELRLDYVSAYGEIVKADEIA 425 (475)
T ss_pred HHh-cCcccCeEE---eeCCcccHHHHHHcCCCEEeccccccchhh--HHHHHHHhCeeEEeecccccccCCcccHHHHH
Confidence 444 334456666 3588889999999999999998 444432 111244445432221 1455665
Q ss_pred HHHHHHhcC
Q 002273 823 QLALQLASD 831 (944)
Q Consensus 823 ~~a~~l~~d 831 (944)
+...++..+
T Consensus 426 ~av~~~m~~ 434 (475)
T PLN02167 426 GAVRSLMDG 434 (475)
T ss_pred HHHHHHhcC
Confidence 555566543
No 368
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=0.0018 Score=66.74 Aligned_cols=102 Identities=20% Similarity=0.174 Sum_probs=92.5
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSG----NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC 122 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 122 (944)
.++.+-..|+.|++.++|..|+..|.+.|+..-. ++..|.+.+.|.+..|+|..|+..+.+++..+|.+..+++.-
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~ 159 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRG 159 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh
Confidence 4566778899999999999999999999997543 567889999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCC
Q 002273 123 GILYKDEGRLVEAAESYHKALSADPS 148 (944)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~al~~~p~ 148 (944)
+.|++.+.++.+|..+++..+.++.+
T Consensus 160 Akc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 160 AKCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 99999999999999999998776544
No 369
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.32 E-value=0.00049 Score=46.74 Aligned_cols=34 Identities=38% Similarity=0.672 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002273 425 AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 458 (944)
Q Consensus 425 ~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~ 458 (944)
+++++.+|.++..+|++++|+++|+++++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3567777777777777777777777777777764
No 370
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.086 Score=52.97 Aligned_cols=206 Identities=13% Similarity=0.070 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH-HH
Q 002273 132 LVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYD-TA 210 (944)
Q Consensus 132 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~-~A 210 (944)
-..|+..-..++.++|.+-..+...-.++..++ .+..+-++++.+.++.+|.+-.+|...-.+....|++. .-
T Consensus 59 S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~------~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rE 132 (318)
T KOG0530|consen 59 SPRALQLTEDAIRLNPANYTVWQYRRVILRHLM------SDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRE 132 (318)
T ss_pred CHHHHHHHHHHHHhCcccchHHHHHHHHHHHhH------HHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccch
Confidence 344566666777777777766555444444443 34667778888888888888888888878888888777 77
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCC
Q 002273 211 LGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSN 290 (944)
Q Consensus 211 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~ 290 (944)
++..++++..+..+.-+|...-.+....+.++.-+.+....++.+-.+..+|...-.+......
T Consensus 133 Lef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~---------------- 196 (318)
T KOG0530|consen 133 LEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKG---------------- 196 (318)
T ss_pred HHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccC----------------
Confidence 7888888888888888888888888888888888888888888776665555443221111000
Q ss_pred CCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC--ChHHHHHHHHHHH-hhCCCCHHHHHHHHHH
Q 002273 291 FQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE-ML--KFDMAIVFYELAF-HFNPHCAEACNNLGVI 366 (944)
Q Consensus 291 ~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g--~~~~A~~~~~~al-~~~p~~~~~~~~la~~ 366 (944)
....-..+.-+.+..+.+...|++..+|..|.-++.. .| .+.+-.......+ ......+..+..+..+
T Consensus 197 --------~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~ 268 (318)
T KOG0530|consen 197 --------VISKAELERELNYTKDKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLDL 268 (318)
T ss_pred --------CccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHHHHHHHH
Confidence 0001122555667777788888888888888777765 33 1233333333333 2233345555555554
Q ss_pred H
Q 002273 367 Y 367 (944)
Q Consensus 367 ~ 367 (944)
|
T Consensus 269 ~ 269 (318)
T KOG0530|consen 269 Y 269 (318)
T ss_pred H
Confidence 4
No 371
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.29 E-value=0.18 Score=59.43 Aligned_cols=209 Identities=15% Similarity=0.024 Sum_probs=145.5
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC--
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSG---------NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN-- 115 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-- 115 (944)
.+.-.+..|.....+.++.+|..+..++...-+. .++..-..|.+....|++++|++..+.++..-|.+
T Consensus 414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~ 493 (894)
T COG2909 414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAY 493 (894)
T ss_pred CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccc
Confidence 5566788899999999999999999988775443 24556677888999999999999999999987754
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCCh--HHHHHHHHHHH----hh
Q 002273 116 ---ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT--QDGIQKYYEAL----KI 186 (944)
Q Consensus 116 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~--~~A~~~~~~al----~~ 186 (944)
..++..+|.+..-.|++++|..+...+.+....+.. +.....+....+.++..+|+. .+....|...- ..
T Consensus 494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~-~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q 572 (894)
T COG2909 494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDV-YHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQ 572 (894)
T ss_pred hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHccc-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhh
Confidence 356778899999999999999999998887544322 233344555667777888833 33333333222 22
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCC--HH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 002273 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE----RPMY--AE-AYCNMGVIYKNRGDLESAIACYERCLAVSP 256 (944)
Q Consensus 187 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~--~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p 256 (944)
.|-........+.++...-+++.+.....+.++. .|.. .. .++.++.++...|++++|...+........
T Consensus 573 ~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~ 649 (894)
T COG2909 573 KPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLL 649 (894)
T ss_pred cccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 3443344444455554444477766666666553 2222 22 335789999999999999999988776643
No 372
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=97.28 E-value=0.012 Score=71.69 Aligned_cols=177 Identities=17% Similarity=0.126 Sum_probs=118.4
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCce--EEE--ecCCCC-CHHHHHHHHHHHH--------HcCCC-CCcE
Q 002273 681 GFITFGSFNNL--AKITPKVLQVWARILCAVPNSR--LVV--KCKPFC-CDSVRHRFLSTLE--------QLGLE-SLRV 744 (944)
Q Consensus 681 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~--l~~--~~~~~~-~~~~~~~~~~~~~--------~~gi~-~~rv 744 (944)
|..++....++ .|..+.-+.+|.+.|...|+-+ ++| +..|.. +-+..+.++..+. +.|-. ..=|
T Consensus 362 g~kiIlgVDRLD~~KGI~~kL~AfE~fL~~~Pe~r~kVVLvQIa~psr~~v~eY~~l~~~V~~~V~rIN~~fg~~~w~Pv 441 (934)
T PLN03064 362 GRKVMLGVDRLDMIKGIPQKILAFEKFLEENPEWRDKVVLLQIAVPTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPI 441 (934)
T ss_pred CceEEEEeeccccccCHHHHHHHHHHHHHhCccccCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHHHhhhccCCCcceE
Confidence 34456666766 8999999999999999999853 333 333322 1122233333332 23321 1225
Q ss_pred EEccCccCcHHHHHhcccccEEecCCCC-CCcccHHHhhhc-----CCcEEecCCCcccccchhH-HHhhcCCcccc--c
Q 002273 745 DLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYM-----GVPCVTMAGSVHAHNVGVS-LLTKVGLKHLI--A 815 (944)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~-----gvPvvt~~g~~~~~r~~~~-~l~~~gl~~~v--~ 815 (944)
+++...-..++++++|..+||+|.|.-. +-+.++.|+++| ||+|+. .-.|++ .| |-..++ .
T Consensus 442 ~~~~~~l~~eeL~AlY~~ADV~lvTslrDGmNLva~Eyva~~~~~~GvLILS-------EfaGaa~~L---~~~AllVNP 511 (934)
T PLN03064 442 HHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQDSKKGVLILS-------EFAGAAQSL---GAGAILVNP 511 (934)
T ss_pred EEeccCCCHHHHHHHHHhCCEEEeCccccccCchHHHHHHhhcCCCCCeEEe-------CCCchHHHh---CCceEEECC
Confidence 5554434478999999999999999988 558899999999 677774 222222 22 322333 3
Q ss_pred CCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 002273 816 KNEDEYVQLALQLAS-DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 870 (944)
Q Consensus 816 ~~~~~y~~~a~~l~~-d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 870 (944)
.|.++..+...+.++ +++++++..+++++.+. -+|...|++.+...+...|.
T Consensus 512 ~D~~~vA~AI~~AL~M~~~Er~~r~~~~~~~V~---~~d~~~Wa~~fl~~L~~~~~ 564 (934)
T PLN03064 512 WNITEVAASIAQALNMPEEEREKRHRHNFMHVT---THTAQEWAETFVSELNDTVV 564 (934)
T ss_pred CCHHHHHHHHHHHHhCCHHHHHHHHHHHHhhcc---cCCHHHHHHHHHHHHHHHHh
Confidence 578888887777666 88888888888888764 36899999998888887774
No 373
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.083 Score=53.07 Aligned_cols=201 Identities=14% Similarity=0.112 Sum_probs=133.7
Q ss_pred CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH-HHHHHH
Q 002273 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM-QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLE-SAIACY 248 (944)
Q Consensus 171 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~-~A~~~~ 248 (944)
..-..|+++-+.++.++|.+-.+|...-.++..++ +..+-++++.++++.+|.+..+|...-.+....|++. .-++..
T Consensus 57 E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef~ 136 (318)
T KOG0530|consen 57 EKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEFT 136 (318)
T ss_pred ccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHHH
Confidence 34456777888889999998888877777766554 5777888999999999999999998888888888888 778888
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 002273 249 ERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYN 328 (944)
Q Consensus 249 ~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 328 (944)
+.++..+..+..+|.....++...+ .++.-+.+..++++.+-.+-.+|..
T Consensus 137 ~~~l~~DaKNYHaWshRqW~~r~F~------------------------------~~~~EL~y~~~Lle~Di~NNSAWN~ 186 (318)
T KOG0530|consen 137 KLMLDDDAKNYHAWSHRQWVLRFFK------------------------------DYEDELAYADELLEEDIRNNSAWNQ 186 (318)
T ss_pred HHHHhccccchhhhHHHHHHHHHHh------------------------------hHHHHHHHHHHHHHHhhhccchhhe
Confidence 8899888888888877766655543 3477777777777765554444433
Q ss_pred HHHHHHH-cC-----ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-CC--CHHHHHHHHHHHH-hhCCCCHHHHHHHH
Q 002273 329 LGVAYGE-ML-----KFDMAIVFYELAFHFNPHCAEACNNLGVIYKD-RD--NLDKAVECYQMAL-SIKPNFSQSLNNLG 398 (944)
Q Consensus 329 la~~~~~-~g-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g--~~~~A~~~~~~al-~~~p~~~~~~~~la 398 (944)
.-.+... .| ..+.-+.+..+.+...|++..+|..|.-++.. .| ...+-.......+ ......+..+..+.
T Consensus 187 Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~ 266 (318)
T KOG0530|consen 187 RYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLL 266 (318)
T ss_pred eeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHHHHHH
Confidence 2211111 11 13344566677777888888888888777765 33 1233333333333 22333444444444
Q ss_pred HHH
Q 002273 399 VVY 401 (944)
Q Consensus 399 ~~~ 401 (944)
.+|
T Consensus 267 d~~ 269 (318)
T KOG0530|consen 267 DLY 269 (318)
T ss_pred HHH
Confidence 444
No 374
>PLN00414 glycosyltransferase family protein
Probab=97.26 E-value=0.0041 Score=70.61 Aligned_cols=155 Identities=10% Similarity=0.046 Sum_probs=93.8
Q ss_pred CCCCeEEEecCCCCcCC-HHHHHHHHHHHhHcCCceEEEecCCCC----CHHHHHHHHHHHHHcCCCCCcEEEccCccCc
Q 002273 679 TNGFITFGSFNNLAKIT-PKVLQVWARILCAVPNSRLVVKCKPFC----CDSVRHRFLSTLEQLGLESLRVDLLPLILLN 753 (944)
Q Consensus 679 ~~~~~~f~~~~~~~K~~-~~~~~~~~~il~~~p~~~l~~~~~~~~----~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~ 753 (944)
+.+.|+|.||.+...++ ..+.++... |...-..-||++..+.. .+...+.+.++....| +++.+++| +
T Consensus 250 ~~~sVvyvsfGS~~~~~~~q~~e~a~g-L~~s~~~Flwvvr~~~~~~~~~~~lp~~f~~r~~~~g-----~vv~~w~P-Q 322 (446)
T PLN00414 250 EPGSVVFCAFGTQFFFEKDQFQEFCLG-MELTGLPFLIAVMPPKGSSTVQEALPEGFEERVKGRG-----IVWEGWVE-Q 322 (446)
T ss_pred CCCceEEEeecccccCCHHHHHHHHHH-HHHcCCCeEEEEecCCCcccchhhCChhHHHHhcCCC-----eEEeccCC-H
Confidence 45678999999999998 555555554 44444456788764321 1123445555554444 35567777 4
Q ss_pred HHHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchhHHH-hhcCCccccc------CCHHHHHHHHH
Q 002273 754 HDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLL-TKVGLKHLIA------KNEDEYVQLAL 826 (944)
Q Consensus 754 ~~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l-~~~gl~~~v~------~~~~~y~~~a~ 826 (944)
.+.|. ...++.|| ..+|.+|++||+++|||+|++|--.= ....+.++ ..+|+.--+. -+.++-.+...
T Consensus 323 ~~vL~-h~~v~~fv---tH~G~nS~~Ea~~~GvP~l~~P~~~d-Q~~na~~~~~~~g~g~~~~~~~~~~~~~~~i~~~v~ 397 (446)
T PLN00414 323 PLILS-HPSVGCFV---NHCGFGSMWESLVSDCQIVFIPQLAD-QVLITRLLTEELEVSVKVQREDSGWFSKESLRDTVK 397 (446)
T ss_pred HHHhc-CCccceEE---ecCchhHHHHHHHcCCCEEecCcccc-hHHHHHHHHHHhCeEEEeccccCCccCHHHHHHHHH
Confidence 55552 24456666 35888999999999999999984211 22334455 3456653331 26667766666
Q ss_pred HHhcCH-HHHHHHHHHHHHH
Q 002273 827 QLASDV-TALANLRMSLRDL 845 (944)
Q Consensus 827 ~l~~d~-~~~~~~r~~~~~~ 845 (944)
++..|. +..+++|++.++.
T Consensus 398 ~~m~~~~e~g~~~r~~a~~~ 417 (446)
T PLN00414 398 SVMDKDSEIGNLVKRNHKKL 417 (446)
T ss_pred HHhcCChhhHHHHHHHHHHH
Confidence 766654 4455566655543
No 375
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.22 E-value=0.46 Score=51.45 Aligned_cols=372 Identities=13% Similarity=0.052 Sum_probs=213.3
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 002273 70 LYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSY 149 (944)
Q Consensus 70 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 149 (944)
-++.-++.+|.+...|+.+...+..++.+++-.+.|++...-.|--+.+|...-..-...+++......|.+++...-+
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~- 108 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN- 108 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc-
Confidence 3455678899999999999999999999999999999999888887777776666566667888888888888765433
Q ss_pred hhHHhHHHHHHHHHHHHHHHc------C----ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH---------HcCCHHHH
Q 002273 150 KPAAECLAIVLTDLGTSLKLA------G----NTQDGIQKYYEALKIDPHYAPAYYNLGVVYS---------ELMQYDTA 210 (944)
Q Consensus 150 ~~~~~~la~~~~~lg~~~~~~------g----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---------~~g~~~~A 210 (944)
.+.|. .|. .|.+. | ..-+|.+..-...-.+|.....|...+..+. ++.+.+.-
T Consensus 109 ldLW~----lYl----~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~i 180 (660)
T COG5107 109 LDLWM----LYL----EYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKI 180 (660)
T ss_pred HhHHH----HHH----HHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHH
Confidence 22111 111 11111 1 1122333322333346777777777766554 33455666
Q ss_pred HHHHHHHHHhCCCCHH-HHHHHH---------HHHHHcC----CHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHH
Q 002273 211 LGCYEKAALERPMYAE-AYCNMG---------VIYKNRG----DLESAIACYERCLAVS-------PNFEIAKNNMAIAL 269 (944)
Q Consensus 211 ~~~~~~al~~~p~~~~-~~~~la---------~~~~~~g----~~~~A~~~~~~al~~~-------p~~~~~~~~la~~l 269 (944)
...|.+++..--.+.+ .|...- ..-.-.| -|-.|...|++...+. |-+.........
T Consensus 181 R~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r-- 258 (660)
T COG5107 181 RNGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAAR-- 258 (660)
T ss_pred HHHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccc--
Confidence 7778888765333322 111111 1100111 2334444444443321 111111100000
Q ss_pred HHhhhhhhhhHHHHHhhcCCCCCchhHHH-----hhhcC-CHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q 002273 270 TDLGTKTYGRALLLFRLNGSNFQSPFFEL-----VKLEG-DIN-QGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMA 342 (944)
Q Consensus 270 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~l-----~~~~~-~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 342 (944)
....+ +..++.+ +...+ -.. .---.+++++...+-.+++|+.........++-+.|
T Consensus 259 ----------------~s~S~-WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~a 321 (660)
T COG5107 259 ----------------TSDSN-WLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKA 321 (660)
T ss_pred ----------------cccch-hhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHH
Confidence 00000 0001110 11111 112 222346777777888889999999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh------------------CCC-CHH-----------
Q 002273 343 IVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI------------------KPN-FSQ----------- 392 (944)
Q Consensus 343 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------------~p~-~~~----------- 392 (944)
+...++.+...|. ....++.+|....+.++...+|+++.+. ++. .++
T Consensus 322 l~tv~rg~~~sps---L~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~ 398 (660)
T COG5107 322 LKTVERGIEMSPS---LTMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTF 398 (660)
T ss_pred HHHHHhcccCCCc---hheeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhh
Confidence 9888888777665 6667777777777766666666665532 111 011
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhhCCCChhhhhhHHHHhhh
Q 002273 393 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV-LYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNY 471 (944)
Q Consensus 393 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~-~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~~~~~~~ 471 (944)
+++.+-..-.+..-.+.|...|-++-+..-...+++..-|. -|...|++.-|...|+-.+...||++--....+..+..
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~ 478 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIR 478 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 12222222233444677777777776554222333333332 25678899999999999999999887555544444444
Q ss_pred c
Q 002273 472 I 472 (944)
Q Consensus 472 ~ 472 (944)
+
T Consensus 479 i 479 (660)
T COG5107 479 I 479 (660)
T ss_pred h
Confidence 4
No 376
>PLN02210 UDP-glucosyl transferase
Probab=97.21 E-value=0.0064 Score=69.42 Aligned_cols=139 Identities=13% Similarity=0.086 Sum_probs=88.9
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHh
Q 002273 680 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 759 (944)
Q Consensus 680 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~ 759 (944)
...|+|.||.+..+.+++.++..+.-|...+...||.++..... .....+.++. ..+|.++.++.| +.+.|..
T Consensus 268 ~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw~~~~~~~~-~~~~~~~~~~-----~~~~g~v~~w~P-Q~~iL~h 340 (456)
T PLN02210 268 RSSVVYISFGSMLESLENQVETIAKALKNRGVPFLWVIRPKEKA-QNVQVLQEMV-----KEGQGVVLEWSP-QEKILSH 340 (456)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEeCCccc-cchhhHHhhc-----cCCCeEEEecCC-HHHHhcC
Confidence 34588999999999999999999999999999888987643211 1112222221 125555678877 5555533
Q ss_pred cccccEEecCCCCCCcccHHHhhhcCCcEEecC--CCcccccchhHHHhh-cCCccccc-------CCHHHHHHHHHHHh
Q 002273 760 YSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVHAHNVGVSLLTK-VGLKHLIA-------KNEDEYVQLALQLA 829 (944)
Q Consensus 760 ~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~--g~~~~~r~~~~~l~~-~gl~~~v~-------~~~~~y~~~a~~l~ 829 (944)
..+..|| ..+|-+|++||++.|||+|++| ++.+ +-+-++.. +|+.-.+. -+.++-.+...++.
T Consensus 341 -~~vg~Fi---tH~G~nS~~Eai~~GVP~v~~P~~~DQ~---~na~~~~~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m 413 (456)
T PLN02210 341 -MAISCFV---THCGWNSTIETVVAGVPVVAYPSWTDQP---IDARLLVDVFGIGVRMRNDAVDGELKVEEVERCIEAVT 413 (456)
T ss_pred -cCcCeEE---eeCCcccHHHHHHcCCCEEecccccccH---HHHHHHHHHhCeEEEEeccccCCcCCHHHHHHHHHHHh
Confidence 3344666 3478889999999999999998 4443 23334443 45543231 25556666666666
Q ss_pred cCH
Q 002273 830 SDV 832 (944)
Q Consensus 830 ~d~ 832 (944)
.+.
T Consensus 414 ~~~ 416 (456)
T PLN02210 414 EGP 416 (456)
T ss_pred cCc
Confidence 554
No 377
>PLN02208 glycosyltransferase family protein
Probab=97.21 E-value=0.0054 Score=69.57 Aligned_cols=151 Identities=12% Similarity=0.068 Sum_probs=93.4
Q ss_pred CCCeEEEecCCCCcCCHH-HHHHHHHH-HhHcCCceEEEecCCCC----CHHHHHHHHHHHHHcCCCCCcEEEccCccCc
Q 002273 680 NGFITFGSFNNLAKITPK-VLQVWARI-LCAVPNSRLVVKCKPFC----CDSVRHRFLSTLEQLGLESLRVDLLPLILLN 753 (944)
Q Consensus 680 ~~~~~f~~~~~~~K~~~~-~~~~~~~i-l~~~p~~~l~~~~~~~~----~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~ 753 (944)
.+.|+|-||.+..+++++ +.++...+ ....|- +|+...+.. .+.+.+.+.++.... .+++.++.| +
T Consensus 250 ~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf--~wv~r~~~~~~~~~~~lp~~f~~r~~~~-----g~~v~~W~P-Q 321 (442)
T PLN02208 250 PKSVVFCSLGSQIILEKDQFQELCLGMELTGLPF--LIAVKPPRGSSTVQEGLPEGFEERVKGR-----GVVWGGWVQ-Q 321 (442)
T ss_pred CCcEEEEeccccccCCHHHHHHHHHHHHhCCCcE--EEEEeCCCcccchhhhCCHHHHHHHhcC-----CcEeeccCC-H
Confidence 456889999999998888 88877776 777775 566542211 012334444444333 356668877 5
Q ss_pred HHHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecC--CCcccccchhHHHh-hcCCccccc------CCHHHHHHH
Q 002273 754 HDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVHAHNVGVSLLT-KVGLKHLIA------KNEDEYVQL 824 (944)
Q Consensus 754 ~~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~--g~~~~~r~~~~~l~-~~gl~~~v~------~~~~~y~~~ 824 (944)
.+.|+- ..+..|+ ..+|-+|++||+++|||+|++| ++.+. .+-++. .+|+.--+- =+.++-.+.
T Consensus 322 ~~iL~H-~~v~~Fv---tHcG~nS~~Eai~~GVP~l~~P~~~DQ~~---na~~~~~~~g~gv~~~~~~~~~~~~~~l~~a 394 (442)
T PLN02208 322 PLILDH-PSIGCFV---NHCGPGTIWESLVSDCQMVLIPFLSDQVL---FTRLMTEEFEVSVEVSREKTGWFSKESLSNA 394 (442)
T ss_pred HHHhcC-CccCeEE---ccCCchHHHHHHHcCCCEEecCcchhhHH---HHHHHHHHhceeEEeccccCCcCcHHHHHHH
Confidence 565533 4445566 3578889999999999999998 55443 233333 356653332 155666665
Q ss_pred HHHHhcCH-HHHHHHHHHHHHH
Q 002273 825 ALQLASDV-TALANLRMSLRDL 845 (944)
Q Consensus 825 a~~l~~d~-~~~~~~r~~~~~~ 845 (944)
..++..|+ +..+++|++.++.
T Consensus 395 i~~~m~~~~e~g~~~r~~~~~~ 416 (442)
T PLN02208 395 IKSVMDKDSDLGKLVRSNHTKL 416 (442)
T ss_pred HHHHhcCCchhHHHHHHHHHHH
Confidence 65666554 4456666666543
No 378
>PLN00164 glucosyltransferase; Provisional
Probab=97.20 E-value=0.0041 Score=71.46 Aligned_cols=139 Identities=16% Similarity=0.141 Sum_probs=87.5
Q ss_pred CCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCC-------CHH----HHHHHHHHHHHcCCCCCcEEEccC
Q 002273 681 GFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFC-------CDS----VRHRFLSTLEQLGLESLRVDLLPL 749 (944)
Q Consensus 681 ~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~-------~~~----~~~~~~~~~~~~gi~~~rv~~~~~ 749 (944)
+.|+|.||.+...++.+.+.-.+.-|.+.+...||.+..+.. +.. ..+.+.++.+..| +++.++
T Consensus 272 ~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~flWv~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~g-----~~v~~w 346 (480)
T PLN00164 272 ASVVFLCFGSMGFFDAPQVREIAAGLERSGHRFLWVLRGPPAAGSRHPTDADLDELLPEGFLERTKGRG-----LVWPTW 346 (480)
T ss_pred CceEEEEecccccCCHHHHHHHHHHHHHcCCCEEEEEcCCcccccccccccchhhhCChHHHHHhcCCC-----eEEeec
Confidence 457899999988999998999999999999988998764211 001 1233333332222 456677
Q ss_pred ccCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecC--CCcccccchhH-HHhhcCCccccc--------CCH
Q 002273 750 ILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVHAHNVGVS-LLTKVGLKHLIA--------KNE 818 (944)
Q Consensus 750 ~~~~~~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~--g~~~~~r~~~~-~l~~~gl~~~v~--------~~~ 818 (944)
.| +.+.|.- ..+-.|| ..+|-+|++||+++|||+|++| ++.+. -+. +...+|+.-.+. -+.
T Consensus 347 ~P-Q~~iL~h-~~vg~fv---tH~GwnS~~Eai~~GVP~l~~P~~~DQ~~---Na~~~~~~~gvG~~~~~~~~~~~~~~~ 418 (480)
T PLN00164 347 AP-QKEILAH-AAVGGFV---THCGWNSVLESLWHGVPMAPWPLYAEQHL---NAFELVADMGVAVAMKVDRKRDNFVEA 418 (480)
T ss_pred CC-HHHHhcC-cccCeEE---eecccchHHHHHHcCCCEEeCCccccchh---HHHHHHHHhCeEEEeccccccCCcCcH
Confidence 76 4555532 2333455 3588889999999999999998 45433 232 234456553331 145
Q ss_pred HHHHHHHHHHhcCH
Q 002273 819 DEYVQLALQLASDV 832 (944)
Q Consensus 819 ~~y~~~a~~l~~d~ 832 (944)
++-.+...++..|.
T Consensus 419 e~l~~av~~vm~~~ 432 (480)
T PLN00164 419 AELERAVRSLMGGG 432 (480)
T ss_pred HHHHHHHHHHhcCC
Confidence 56555555666654
No 379
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=97.19 E-value=0.011 Score=67.18 Aligned_cols=141 Identities=9% Similarity=0.029 Sum_probs=89.3
Q ss_pred CCCeEEEecCCCCc-CCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHH
Q 002273 680 NGFITFGSFNNLAK-ITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 758 (944)
Q Consensus 680 ~~~~~f~~~~~~~K-~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 758 (944)
+..++|.++.+... ....+.....+.+...+.-.++..+..... . ..+ +++|.+.+.++ .. .
T Consensus 238 ~~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~i~~~g~~~~~----~--------~~~-~~~v~~~~~~p-~~---~ 300 (401)
T cd03784 238 GRPPVYVGFGSMVVRDPEALARLDVEAVATLGQRAILSLGWGGLG----A--------EDL-PDNVRVVDFVP-HD---W 300 (401)
T ss_pred CCCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeEEEEccCcccc----c--------cCC-CCceEEeCCCC-HH---H
Confidence 34566777766543 445677777777777655445555432111 0 233 68899988865 33 4
Q ss_pred hcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccccC---CHHHHHHHHHHHhcCHHHH
Q 002273 759 AYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQLASDVTAL 835 (944)
Q Consensus 759 ~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~---~~~~y~~~a~~l~~d~~~~ 835 (944)
.+..||+++ ..+|.+|+.|||.+|||+|.++-..- .-..+..+...|..-.+.. +.++..+...++.+|+ .+
T Consensus 301 ll~~~d~~I---~hgG~~t~~eal~~GvP~v~~P~~~d-Q~~~a~~~~~~G~g~~l~~~~~~~~~l~~al~~~l~~~-~~ 375 (401)
T cd03784 301 LLPRCAAVV---HHGGAGTTAAALRAGVPQLVVPFFGD-QPFWAARVAELGAGPALDPRELTAERLAAALRRLLDPP-SR 375 (401)
T ss_pred Hhhhhheee---ecCCchhHHHHHHcCCCEEeeCCCCC-cHHHHHHHHHCCCCCCCCcccCCHHHHHHHHHHHhCHH-HH
Confidence 456699999 45777999999999999999874321 2334556677787655543 6777777777777754 44
Q ss_pred HHHHHHH
Q 002273 836 ANLRMSL 842 (944)
Q Consensus 836 ~~~r~~~ 842 (944)
++.++..
T Consensus 376 ~~~~~~~ 382 (401)
T cd03784 376 RRAAALL 382 (401)
T ss_pred HHHHHHH
Confidence 4444333
No 380
>PLN02207 UDP-glycosyltransferase
Probab=97.18 E-value=0.0093 Score=67.89 Aligned_cols=106 Identities=18% Similarity=0.148 Sum_probs=76.0
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCC--CHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHH
Q 002273 680 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFC--CDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 757 (944)
Q Consensus 680 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~--~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~ 757 (944)
.+.|+|.||.+...++.+.++..+.-|...+...||.+..+.. .+.+.+.+.++ + .+|+.+.++.| +.+.|
T Consensus 274 ~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~flW~~r~~~~~~~~~lp~~f~er-----~-~~~g~i~~W~P-Q~~IL 346 (468)
T PLN02207 274 EASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFLWSLRTEEVTNDDLLPEGFLDR-----V-SGRGMICGWSP-QVEIL 346 (468)
T ss_pred CCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEEEEEeCCCccccccCCHHHHhh-----c-CCCeEEEEeCC-HHHHh
Confidence 4568899999999999999999999999999999998764311 11111233322 2 46666778887 55555
Q ss_pred HhcccccEEecCCCCCCcccHHHhhhcCCcEEecC--CCcc
Q 002273 758 QAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVH 796 (944)
Q Consensus 758 ~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~--g~~~ 796 (944)
+- ..+..|+ ..+|-+|++||+++|||+|++| |+.+
T Consensus 347 ~H-~~vg~Fv---TH~GwnS~~Eai~~GVP~l~~P~~~DQ~ 383 (468)
T PLN02207 347 AH-KAVGGFV---SHCGWNSIVESLWFGVPIVTWPMYAEQQ 383 (468)
T ss_pred cc-cccceee---ecCccccHHHHHHcCCCEEecCccccch
Confidence 33 4455565 3578889999999999999998 4544
No 381
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=97.16 E-value=0.0019 Score=75.80 Aligned_cols=161 Identities=16% Similarity=0.223 Sum_probs=90.5
Q ss_pred CCCeEEEecCCCCcCCH-HHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHH
Q 002273 680 NGFITFGSFNNLAKITP-KVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 758 (944)
Q Consensus 680 ~~~~~f~~~~~~~K~~~-~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 758 (944)
+..++|-||++..+-.| +.++..++.+.+.|...||-..+. .... + ++.+.+..+.| +.+.|+
T Consensus 275 ~~~vv~vsfGs~~~~~~~~~~~~~~~~~~~~~~~~iW~~~~~-----~~~~---------l-~~n~~~~~W~P-Q~~lL~ 338 (500)
T PF00201_consen 275 KKGVVYVSFGSIVSSMPEEKLKEIAEAFENLPQRFIWKYEGE-----PPEN---------L-PKNVLIVKWLP-QNDLLA 338 (500)
T ss_dssp TTEEEEEE-TSSSTT-HHHHHHHHHHHHHCSTTEEEEEETCS-----HGCH---------H-HTTEEEESS---HHHHHT
T ss_pred CCCEEEEecCcccchhHHHHHHHHHHHHhhCCCccccccccc-----cccc---------c-cceEEEecccc-chhhhh
Confidence 34577999998765444 448889999999999777765431 1111 1 46678888987 666664
Q ss_pred hcccccEEecCCCCCCcccHHHhhhcCCcEEecC--CCcccccchhHHHhhcCCccccc---CCHHHHHHHHHHHhcCHH
Q 002273 759 AYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVHAHNVGVSLLTKVGLKHLIA---KNEDEYVQLALQLASDVT 833 (944)
Q Consensus 759 ~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~--g~~~~~r~~~~~l~~~gl~~~v~---~~~~~y~~~a~~l~~d~~ 833 (944)
...+++|+ ..+|-+|+.||++.|||+|++| |+.+. -+..+...|....+- -|.++..+...++..|+.
T Consensus 339 -hp~v~~fi---tHgG~~s~~Ea~~~gvP~l~~P~~~DQ~~---na~~~~~~G~g~~l~~~~~~~~~l~~ai~~vl~~~~ 411 (500)
T PF00201_consen 339 -HPRVKLFI---THGGLNSTQEALYHGVPMLGIPLFGDQPR---NAARVEEKGVGVVLDKNDLTEEELRAAIREVLENPS 411 (500)
T ss_dssp -STTEEEEE---ES--HHHHHHHHHCT--EEE-GCSTTHHH---HHHHHHHTTSEEEEGGGC-SHHHHHHHHHHHHHSHH
T ss_pred -cccceeee---eccccchhhhhhhccCCccCCCCcccCCc---cceEEEEEeeEEEEEecCCcHHHHHHHHHHHHhhhH
Confidence 45567776 2477789999999999999998 55432 344566667754332 267888888888889986
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHHHHHHHHH
Q 002273 834 ALANLRMSLRDLMSKSPVCDGQNFALGLEST 864 (944)
Q Consensus 834 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~ 864 (944)
..++.++ +++.+...|.--.++.+..+|-+
T Consensus 412 y~~~a~~-ls~~~~~~p~~p~~~~~~~ie~v 441 (500)
T PF00201_consen 412 YKENAKR-LSSLFRDRPISPLERAVWWIEYV 441 (500)
T ss_dssp HHHHHHH-HHHTTT-----------------
T ss_pred HHHHHHH-HHHHHhcCCCCHHHHHHHHHHHH
Confidence 5555433 44444444432233444444433
No 382
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=97.16 E-value=0.099 Score=56.36 Aligned_cols=128 Identities=27% Similarity=0.317 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHCC-------C
Q 002273 305 INQGVAYYKKALYYNWHYADAMYNLGVAYGE----MLKFDMAIVFYELAFHFNPHC-AEACNNLGVIYKDRD-------N 372 (944)
Q Consensus 305 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g-------~ 372 (944)
..+|..+|+.+. ....+.+.+.+|.+|.. ..+..+|..+|+++.+..-.. ..+.+.++.+|..-. +
T Consensus 93 ~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~ 170 (292)
T COG0790 93 KTKAADWYRCAA--ADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYD 170 (292)
T ss_pred HHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHH
Confidence 455555555222 23344555555555554 335666666666666554332 233555665555431 2
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 002273 373 LDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 439 (944)
Q Consensus 373 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g 439 (944)
...|...|.++.... ++.+.+.+|.+|.. ..++++|..+|+++.+... ..+.+.++ ++...|
T Consensus 171 ~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 171 DKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred HHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 246777777776655 67788888877755 3478888888888887765 77778888 665555
No 383
>PLN02554 UDP-glycosyltransferase family protein
Probab=97.16 E-value=0.0091 Score=68.88 Aligned_cols=119 Identities=14% Similarity=0.125 Sum_probs=79.8
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCC-----------C--HHHHHHHHHHHHHcCCCCCcEEE
Q 002273 680 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFC-----------C--DSVRHRFLSTLEQLGLESLRVDL 746 (944)
Q Consensus 680 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~-----------~--~~~~~~~~~~~~~~gi~~~rv~~ 746 (944)
.+.|+|-||++...++++.++..+.-|...+...||.+..+.. + +.....+.++. .+|+.+
T Consensus 273 ~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~r~------~~~g~v 346 (481)
T PLN02554 273 PKSVVFLCFGSMGGFSEEQAREIAIALERSGHRFLWSLRRASPNIMKEPPGEFTNLEEILPEGFLDRT------KDIGKV 346 (481)
T ss_pred CCcEEEEeccccccCCHHHHHHHHHHHHHcCCCeEEEEcCCcccccccccccccchhhhCChHHHHHh------ccCceE
Confidence 3457899999999999999999999999999988888753210 0 00122333222 367777
Q ss_pred ccCccCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecC--CCcccccchhHHHhhcCCc
Q 002273 747 LPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVHAHNVGVSLLTKVGLK 811 (944)
Q Consensus 747 ~~~~~~~~~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~--g~~~~~r~~~~~l~~~gl~ 811 (944)
.++.| +.+.| ....++.|+ ..+|-+|++||++.|||+|++| ++.+.. +.-++..+|+.
T Consensus 347 ~~W~P-Q~~iL-~H~~v~~Fv---tH~G~nS~~Ea~~~GVP~l~~P~~~DQ~~N--a~~~v~~~g~G 406 (481)
T PLN02554 347 IGWAP-QVAVL-AKPAIGGFV---THCGWNSILESLWFGVPMAAWPLYAEQKFN--AFEMVEELGLA 406 (481)
T ss_pred EeeCC-HHHHh-CCcccCccc---ccCccchHHHHHHcCCCEEecCccccchhh--HHHHHHHhCce
Confidence 78887 45555 235566666 3578889999999999999998 444422 11234555554
No 384
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=97.16 E-value=0.013 Score=66.35 Aligned_cols=164 Identities=17% Similarity=0.082 Sum_probs=118.9
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHH
Q 002273 681 GFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 758 (944)
Q Consensus 681 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 758 (944)
..+.||..+|+ .|.-+-.+.+--.++... .++++.|.+ +......++...+.+ ++++.+.-.-. ..-...
T Consensus 293 ~~pl~~~vsRl~~QKG~dl~~~~i~~~l~~~--~~~vilG~g--d~~le~~~~~la~~~---~~~~~~~i~~~-~~la~~ 364 (487)
T COG0297 293 PGPLFGFVSRLTAQKGLDLLLEAIDELLEQG--WQLVLLGTG--DPELEEALRALASRH---PGRVLVVIGYD-EPLAHL 364 (487)
T ss_pred CCcEEEEeeccccccchhHHHHHHHHHHHhC--ceEEEEecC--cHHHHHHHHHHHHhc---CceEEEEeeec-HHHHHH
Confidence 34579998877 899899999888888876 889998876 556777777777766 34554433322 345566
Q ss_pred hcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccccC------------------CHH
Q 002273 759 AYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK------------------NED 819 (944)
Q Consensus 759 ~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~------------------~~~ 819 (944)
.|..+|++|-|+-| +-|.|-++||..|++.|. .++| ||.|.|.+ |++
T Consensus 365 i~agaD~~lmPSrfEPcGL~ql~amryGtvpIv-------~~tG-------GLadTV~~~~~~~~~~~gtGf~f~~~~~~ 430 (487)
T COG0297 365 IYAGADVILMPSRFEPCGLTQLYAMRYGTLPIV-------RETG-------GLADTVVDRNEWLIQGVGTGFLFLQTNPD 430 (487)
T ss_pred HHhcCCEEEeCCcCcCCcHHHHHHHHcCCcceE-------cccC-------CccceecCccchhccCceeEEEEecCCHH
Confidence 78999999999988 889999999999966555 5666 77766642 444
Q ss_pred HH---HHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 002273 820 EY---VQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 870 (944)
Q Consensus 820 ~y---~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 870 (944)
++ +.+|+.+..+++.. +|.-.+..|. ..|.++..+..+.+.|+.+-.
T Consensus 431 ~l~~al~rA~~~y~~~~~~--w~~~~~~~m~--~d~sw~~sa~~y~~lY~~~~~ 480 (487)
T COG0297 431 HLANALRRALVLYRAPPLL--WRKVQPNAMG--ADFSWDLSAKEYVELYKPLLS 480 (487)
T ss_pred HHHHHHHHHHHHhhCCHHH--HHHHHHhhcc--cccCchhHHHHHHHHHHHHhc
Confidence 44 45666777776542 4444455554 568999999999999998754
No 385
>PLN02562 UDP-glycosyltransferase
Probab=97.15 E-value=0.0085 Score=68.32 Aligned_cols=142 Identities=11% Similarity=0.075 Sum_probs=88.8
Q ss_pred CCeEEEecCCCC-cCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHh
Q 002273 681 GFITFGSFNNLA-KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 759 (944)
Q Consensus 681 ~~~~f~~~~~~~-K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~ 759 (944)
+.++|-||++.. .++++.++..+.-+...+...||.+..+.. +.....+.++ + ++|+.+.++.| +.+.|..
T Consensus 273 ~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~~~~~~~-~~l~~~~~~~-----~-~~~~~v~~w~P-Q~~iL~h 344 (448)
T PLN02562 273 NSVIYISFGSWVSPIGESNVRTLALALEASGRPFIWVLNPVWR-EGLPPGYVER-----V-SKQGKVVSWAP-QLEVLKH 344 (448)
T ss_pred CceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEEEcCCch-hhCCHHHHHH-----h-ccCEEEEecCC-HHHHhCC
Confidence 346788888764 789999999999999999988887754211 0111222222 2 47888888887 5555532
Q ss_pred cccccEEecCCCCCCcccHHHhhhcCCcEEecC--CCcccccchhHHHh-hcCCcccc-cCCHHHHHHHHHHHhcCHHHH
Q 002273 760 YSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVHAHNVGVSLLT-KVGLKHLI-AKNEDEYVQLALQLASDVTAL 835 (944)
Q Consensus 760 ~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~--g~~~~~r~~~~~l~-~~gl~~~v-~~~~~~y~~~a~~l~~d~~~~ 835 (944)
..+-.|+ ..+|-+|++||+++|||+|++| ++.+. -+..+. .+|+.=-+ --+.++-.+...++..|++.+
T Consensus 345 -~~v~~fv---tH~G~nS~~Eal~~GvP~l~~P~~~DQ~~---na~~~~~~~g~g~~~~~~~~~~l~~~v~~~l~~~~~r 417 (448)
T PLN02562 345 -QAVGCYL---THCGWNSTMEAIQCQKRLLCYPVAGDQFV---NCAYIVDVWKIGVRISGFGQKEVEEGLRKVMEDSGMG 417 (448)
T ss_pred -CccceEE---ecCcchhHHHHHHcCCCEEeCCcccchHH---HHHHHHHHhCceeEeCCCCHHHHHHHHHHHhCCHHHH
Confidence 3334555 3588889999999999999988 45432 122221 13332111 136677555555666776554
Q ss_pred HH
Q 002273 836 AN 837 (944)
Q Consensus 836 ~~ 837 (944)
++
T Consensus 418 ~~ 419 (448)
T PLN02562 418 ER 419 (448)
T ss_pred HH
Confidence 44
No 386
>PLN02173 UDP-glucosyl transferase family protein
Probab=97.15 E-value=0.0047 Score=69.95 Aligned_cols=146 Identities=14% Similarity=0.183 Sum_probs=90.5
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHh
Q 002273 680 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 759 (944)
Q Consensus 680 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~ 759 (944)
.+.|+|-||.+...++++.++-.+.-|...| .||.+..+. .+...+.+.++ +..+++.+.++.| +.+.|.
T Consensus 263 ~~svvyvsfGS~~~~~~~~~~ela~gLs~~~--flWvvr~~~-~~~lp~~~~~~-----~~~~~~~i~~W~P-Q~~iL~- 332 (449)
T PLN02173 263 QGSVVYIAFGSMAKLSSEQMEEIASAISNFS--YLWVVRASE-ESKLPPGFLET-----VDKDKSLVLKWSP-QLQVLS- 332 (449)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHhcCCC--EEEEEeccc-hhcccchHHHh-----hcCCceEEeCCCC-HHHHhC-
Confidence 4558899999999999999999888887666 778775321 11111222222 2246788889987 555553
Q ss_pred cccccEEecCCCCCCcccHHHhhhcCCcEEecC--CCcccccchhHHHhh-cCCccccc-------CCHHHHHHHHHHHh
Q 002273 760 YSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVHAHNVGVSLLTK-VGLKHLIA-------KNEDEYVQLALQLA 829 (944)
Q Consensus 760 ~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~--g~~~~~r~~~~~l~~-~gl~~~v~-------~~~~~y~~~a~~l~ 829 (944)
...+..|| ..+|.+|++||+++|||+|++| ++.+ +.+-++.. +|+.--|. -+.++-.+...++.
T Consensus 333 H~~v~~Fv---tHcGwnS~~Eai~~GVP~l~~P~~~DQ~---~Na~~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm 406 (449)
T PLN02173 333 NKAIGCFM---THCGWNSTMEGLSLGVPMVAMPQWTDQP---MNAKYIQDVWKVGVRVKAEKESGIAKREEIEFSIKEVM 406 (449)
T ss_pred CCccceEE---ecCccchHHHHHHcCCCEEecCchhcch---HHHHHHHHHhCceEEEeecccCCcccHHHHHHHHHHHh
Confidence 24445666 3588899999999999999998 3432 33334432 23331111 15677777777777
Q ss_pred cCHHHHHHHHHHH
Q 002273 830 SDVTALANLRMSL 842 (944)
Q Consensus 830 ~d~~~~~~~r~~~ 842 (944)
.|.+. +++|++.
T Consensus 407 ~~~~~-~~~r~~a 418 (449)
T PLN02173 407 EGEKS-KEMKENA 418 (449)
T ss_pred cCChH-HHHHHHH
Confidence 66432 3444433
No 387
>PLN02448 UDP-glycosyltransferase family protein
Probab=97.11 E-value=0.0082 Score=68.93 Aligned_cols=133 Identities=14% Similarity=0.085 Sum_probs=86.1
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHh
Q 002273 680 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 759 (944)
Q Consensus 680 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~ 759 (944)
.+.++|-||.....++++.++...+-|...+...+|....+ ...+.+. ..+|+.+.++.+ +.+.|.
T Consensus 273 ~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~------~~~~~~~------~~~~~~v~~w~p-Q~~iL~- 338 (459)
T PLN02448 273 EGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVARGE------ASRLKEI------CGDMGLVVPWCD-QLKVLC- 338 (459)
T ss_pred CCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEcCc------hhhHhHh------ccCCEEEeccCC-HHHHhc-
Confidence 35578999998888999999999999999888788865422 0112111 136788888887 555553
Q ss_pred cccccEEecCCCCCCcccHHHhhhcCCcEEecCC--CcccccchhHHHhh-cCCccccc--------CCHHHHHHHHHHH
Q 002273 760 YSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG--SVHAHNVGVSLLTK-VGLKHLIA--------KNEDEYVQLALQL 828 (944)
Q Consensus 760 ~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g--~~~~~r~~~~~l~~-~gl~~~v~--------~~~~~y~~~a~~l 828 (944)
...+..|+ ..+|.+|++||+++|||+|++|- +.+. .+..+.. +|+.--|. -+.++-.+...++
T Consensus 339 h~~v~~fv---tHgG~nS~~eal~~GvP~l~~P~~~DQ~~---na~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~v 412 (459)
T PLN02448 339 HSSVGGFW---THCGWNSTLEAVFAGVPMLTFPLFWDQPL---NSKLIVEDWKIGWRVKREVGEETLVGREEIAELVKRF 412 (459)
T ss_pred cCccceEE---ecCchhHHHHHHHcCCCEEeccccccchh---hHHHHHHHhCceEEEecccccCCcCcHHHHHHHHHHH
Confidence 23344466 35888899999999999999984 3322 2233322 33332221 2566777777777
Q ss_pred hcCH
Q 002273 829 ASDV 832 (944)
Q Consensus 829 ~~d~ 832 (944)
..|+
T Consensus 413 l~~~ 416 (459)
T PLN02448 413 MDLE 416 (459)
T ss_pred hcCC
Confidence 7664
No 388
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.06 E-value=0.029 Score=53.99 Aligned_cols=117 Identities=24% Similarity=0.144 Sum_probs=87.3
Q ss_pred HHHHHHHHHHhhCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHH
Q 002273 341 MAIVFYELAFHFNPHCA---EACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNLGVVYTVQGKMDAAAEMI 414 (944)
Q Consensus 341 ~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~l 414 (944)
+.....++....++... .+...++..+...+++++|+..++.++....+. .-+-.+|+.+...+|++++|+..+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 44444555555554442 345567888999999999999999998654432 336678999999999999999988
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002273 415 EKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 458 (944)
Q Consensus 415 ~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~ 458 (944)
....... =.+......|.++...|+.++|+..|+++++.+++.
T Consensus 150 ~t~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 150 DTIKEES-WAAIVAELRGDILLAKGDKQEARAAYEKALESDASP 192 (207)
T ss_pred hcccccc-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence 7653211 013345668999999999999999999999998554
No 389
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.01 E-value=0.017 Score=54.89 Aligned_cols=113 Identities=19% Similarity=0.159 Sum_probs=71.2
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 002273 329 LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMD 408 (944)
Q Consensus 329 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 408 (944)
.+......++.+.++..+++++.+.....-.-... ..-.......++.. ...+...++..+...|+++
T Consensus 12 ~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~------~~W~~~~r~~l~~~------~~~~~~~l~~~~~~~~~~~ 79 (146)
T PF03704_consen 12 EARAAARAGDPEEAIELLEEALALYRGDFLPDLDD------EEWVEPERERLREL------YLDALERLAEALLEAGDYE 79 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT------STTHHHHHHHHHHH------HHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc------cHHHHHHHHHHHHH------HHHHHHHHHHHHHhccCHH
Confidence 34455566677777777777776632210000000 00111111222222 1346667788888999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002273 409 AAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 453 (944)
Q Consensus 409 ~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~ 453 (944)
+|+..+++++..+|.+..++..+..+|...|+..+|++.|+++.+
T Consensus 80 ~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 80 EALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988754
No 390
>PLN03015 UDP-glucosyl transferase
Probab=97.00 E-value=0.009 Score=67.79 Aligned_cols=103 Identities=18% Similarity=0.126 Sum_probs=74.5
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCC--------CH----HHHHHHHHHHHHcCCCCCcEEEc
Q 002273 680 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFC--------CD----SVRHRFLSTLEQLGLESLRVDLL 747 (944)
Q Consensus 680 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~--------~~----~~~~~~~~~~~~~gi~~~rv~~~ 747 (944)
.+.|+|.||.+...++++-++-.+.-|...+...||.+..+.. .+ .+.+.+.++....| +++.
T Consensus 266 ~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~~~~~~~~~~~~~lp~~f~er~~~rG-----l~v~ 340 (470)
T PLN03015 266 ERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVWVLRRPASYLGASSSDDDQVSASLPEGFLDRTRGVG-----LVVT 340 (470)
T ss_pred CCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEEEEecCccccccccccccchhhcCChHHHHhhccCc-----eEEE
Confidence 4568899999999999999999999999999999999853210 00 12234444443333 4556
Q ss_pred cCccCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecC
Q 002273 748 PLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA 792 (944)
Q Consensus 748 ~~~~~~~~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~ 792 (944)
++.| +.+.|. ...+..|+ ..+|-+|++||+++|||+|++|
T Consensus 341 ~W~P-Q~~vL~-h~~vg~fv---tH~GwnS~~Eai~~GvP~v~~P 380 (470)
T PLN03015 341 QWAP-QVEILS-HRSIGGFL---SHCGWSSVLESLTKGVPIVAWP 380 (470)
T ss_pred ecCC-HHHHhc-cCccCeEE---ecCCchhHHHHHHcCCCEEecc
Confidence 7777 556554 34455566 3578889999999999999998
No 391
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=97.00 E-value=0.32 Score=59.63 Aligned_cols=134 Identities=19% Similarity=0.146 Sum_probs=96.4
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHh----C---CHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 002273 54 YANILRSRNKFVDALALYEIVLEKDSG---NVEAHIGKGICLQMQ----N---MGRLAFDSFSEAVKLDPQNACAHTHCG 123 (944)
Q Consensus 54 ~A~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~----g---~~~~A~~~~~~al~~~p~~~~~~~~la 123 (944)
.-..++..+.|++|+..|+++-...|. ..++.+..|..+..+ | .+++|+..|++. .-.|..|--|...|
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 559 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLGKA 559 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHhHH
Confidence 345677889999999999999999986 457888888887643 2 466777777763 34566777788999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 002273 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY 190 (944)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 190 (944)
.+|.++|++++-+++|..+++..|.++......-.+.+.+-.+... +-..|....--++..-|..
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 624 (932)
T PRK13184 560 LVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYK--HRREALVFMLLALWIAPEK 624 (932)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCccc
Confidence 9999999999999999999999999887655444444444433332 2234444444555555543
No 392
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=96.97 E-value=0.0077 Score=65.97 Aligned_cols=110 Identities=16% Similarity=0.236 Sum_probs=77.9
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHh
Q 002273 680 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 759 (944)
Q Consensus 680 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~ 759 (944)
++..++.+++....- ++ .++++..|+..+++.|.+. ... ..++|.+.+.. ..++...
T Consensus 191 ~~~~iLv~~gg~~~~-----~~-~~~l~~~~~~~~~v~g~~~----~~~-----------~~~ni~~~~~~--~~~~~~~ 247 (318)
T PF13528_consen 191 DEPKILVYFGGGGPG-----DL-IEALKALPDYQFIVFGPNA----ADP-----------RPGNIHVRPFS--TPDFAEL 247 (318)
T ss_pred CCCEEEEEeCCCcHH-----HH-HHHHHhCCCCeEEEEcCCc----ccc-----------cCCCEEEeecC--hHHHHHH
Confidence 344457777655332 44 4677789988888875431 000 15788887764 2577788
Q ss_pred cccccEEecCCCCCCcccHHHhhhcCCcEEecCCCc-ccccchhHHHhhcCCccccc
Q 002273 760 YSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSV-HAHNVGVSLLTKVGLKHLIA 815 (944)
Q Consensus 760 ~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~-~~~r~~~~~l~~~gl~~~v~ 815 (944)
+..||+++-. +|.||++|++++|+|+|.++-.. .-.+.-+..|+.+|+...+.
T Consensus 248 m~~ad~vIs~---~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~G~~~~~~ 301 (318)
T PF13528_consen 248 MAAADLVISK---GGYTTISEALALGKPALVIPRPGQDEQEYNARKLEELGLGIVLS 301 (318)
T ss_pred HHhCCEEEEC---CCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHCCCeEEcc
Confidence 8889999943 77888999999999999988653 44666788899999987764
No 393
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=96.95 E-value=0.0017 Score=44.14 Aligned_cols=31 Identities=29% Similarity=0.498 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002273 393 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 423 (944)
Q Consensus 393 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 423 (944)
+|+++|.++..+|++++|+..|+++++++|+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4455555555555555555555555555544
No 394
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=96.93 E-value=0.0056 Score=65.31 Aligned_cols=86 Identities=15% Similarity=0.190 Sum_probs=56.5
Q ss_pred CCCcCCHHHHHHHHHHHhHcCCceE-EEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEec
Q 002273 690 NLAKITPKVLQVWARILCAVPNSRL-VVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLD 768 (944)
Q Consensus 690 ~~~K~~~~~~~~~~~il~~~p~~~l-~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld 768 (944)
...+++..+++...++. ++..+ ++.|.+.. ..+.+++..+.. .+|.+.+.+ .+....+..+|+++-
T Consensus 181 d~~~~~~~~l~~l~~~~---~~~~i~vv~G~~~~---~~~~l~~~~~~~----~~i~~~~~~---~~m~~lm~~aDl~Is 247 (279)
T TIGR03590 181 DPDNLTLKLLSALAESQ---INISITLVTGSSNP---NLDELKKFAKEY----PNIILFIDV---ENMAELMNEADLAIG 247 (279)
T ss_pred CCcCHHHHHHHHHhccc---cCceEEEEECCCCc---CHHHHHHHHHhC----CCEEEEeCH---HHHHHHHHHCCEEEE
Confidence 34556777777665532 33333 34454432 234555554442 478777764 466677888999996
Q ss_pred CCCCCCcccHHHhhhcCCcEEecC
Q 002273 769 TFPYAGTTTTCESLYMGVPCVTMA 792 (944)
Q Consensus 769 ~~~~~~~~t~~eal~~gvPvvt~~ 792 (944)
.||+|+.|++++|+|+|.++
T Consensus 248 ----~~G~T~~E~~a~g~P~i~i~ 267 (279)
T TIGR03590 248 ----AAGSTSWERCCLGLPSLAIC 267 (279)
T ss_pred ----CCchHHHHHHHcCCCEEEEE
Confidence 47799999999999999864
No 395
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.92 E-value=0.00096 Score=69.13 Aligned_cols=97 Identities=16% Similarity=0.098 Sum_probs=90.8
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 002273 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGR 131 (944)
Q Consensus 52 ~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 131 (944)
-..|...+..|++++|++.|..+++++|.....+...+.+++++++...|+..+..+++++|+...-|-..+.....+|+
T Consensus 118 k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~ 197 (377)
T KOG1308|consen 118 KVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGN 197 (377)
T ss_pred HHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhc
Confidence 34567788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCC
Q 002273 132 LVEAAESYHKALSADPS 148 (944)
Q Consensus 132 ~~~A~~~~~~al~~~p~ 148 (944)
+++|...+..+.+++-+
T Consensus 198 ~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 198 WEEAAHDLALACKLDYD 214 (377)
T ss_pred hHHHHHHHHHHHhcccc
Confidence 99999999999987654
No 396
>PLN02555 limonoid glucosyltransferase
Probab=96.92 E-value=0.015 Score=66.61 Aligned_cols=153 Identities=16% Similarity=0.120 Sum_probs=92.9
Q ss_pred CCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHH-HHHHHHHHHHcCCCCCcEEEccCccCcHHHHHh
Q 002273 681 GFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSV-RHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 759 (944)
Q Consensus 681 ~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~-~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~ 759 (944)
+.|+|-||.+...+++..+.-.+.-|...+...||.+..+...... ...+-+.+.+ .+ .+|+.+.++.| +.+.| .
T Consensus 277 ~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~flW~~~~~~~~~~~~~~~lp~~~~~-~~-~~~g~v~~W~P-Q~~iL-~ 352 (480)
T PLN02555 277 SSVVYISFGTVVYLKQEQIDEIAYGVLNSGVSFLWVMRPPHKDSGVEPHVLPEEFLE-KA-GDKGKIVQWCP-QEKVL-A 352 (480)
T ss_pred CceeEEEeccccCCCHHHHHHHHHHHHhcCCeEEEEEecCcccccchhhcCChhhhh-hc-CCceEEEecCC-HHHHh-C
Confidence 3478999998889999888888888899988888887532110000 0111111211 12 46777788877 44444 3
Q ss_pred cccccEEecCCCCCCcccHHHhhhcCCcEEecC--CCcccccchhHHH-hhcCCccccc--------CCHHHHHHHHHHH
Q 002273 760 YSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVHAHNVGVSLL-TKVGLKHLIA--------KNEDEYVQLALQL 828 (944)
Q Consensus 760 ~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~--g~~~~~r~~~~~l-~~~gl~~~v~--------~~~~~y~~~a~~l 828 (944)
...+..|+ ..+|-+|++||+++|||+|++| ++.+.. +.++ ..+|+.--+. =+.++..+...++
T Consensus 353 H~~v~~Fv---tH~G~nS~~Eai~~GVP~l~~P~~~DQ~~N---a~~~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~v 426 (480)
T PLN02555 353 HPSVACFV---THCGWNSTMEALSSGVPVVCFPQWGDQVTD---AVYLVDVFKTGVRLCRGEAENKLITREEVAECLLEA 426 (480)
T ss_pred CCccCeEE---ecCCcchHHHHHHcCCCEEeCCCccccHHH---HHHHHHHhCceEEccCCccccCcCcHHHHHHHHHHH
Confidence 46677776 3588889999999999999998 443322 2223 2335553331 1455666555566
Q ss_pred hcCHHHHHHHHHHHHH
Q 002273 829 ASDVTALANLRMSLRD 844 (944)
Q Consensus 829 ~~d~~~~~~~r~~~~~ 844 (944)
..++ +-+.+|++.++
T Consensus 427 m~~~-~g~~~r~ra~~ 441 (480)
T PLN02555 427 TVGE-KAAELKQNALK 441 (480)
T ss_pred hcCc-hHHHHHHHHHH
Confidence 6553 23455555444
No 397
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.91 E-value=1.5 Score=52.06 Aligned_cols=187 Identities=14% Similarity=-0.041 Sum_probs=123.7
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-----CCHHHHHH
Q 002273 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGN-VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDP-----QNACAHTH 121 (944)
Q Consensus 48 ~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~ 121 (944)
.+-...-+.-+...|...+|+...-.+ .+|.. +...-..+.-++..++..- +...++.-| .++.....
T Consensus 347 ~~lH~~Aa~w~~~~g~~~eAI~hAlaA--~d~~~aa~lle~~~~~L~~~~~lsl----l~~~~~~lP~~~l~~~P~Lvll 420 (894)
T COG2909 347 KELHRAAAEWFAEHGLPSEAIDHALAA--GDPEMAADLLEQLEWQLFNGSELSL----LLAWLKALPAELLASTPRLVLL 420 (894)
T ss_pred hHHHHHHHHHHHhCCChHHHHHHHHhC--CCHHHHHHHHHhhhhhhhcccchHH----HHHHHHhCCHHHHhhCchHHHH
Confidence 455566667777788888888765443 23322 2223333444444454432 333333333 34566677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCC--ChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-----HHHH
Q 002273 122 CGILYKDEGRLVEAAESYHKALSADPS--YKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY-----APAY 194 (944)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~ 194 (944)
.+.......++.+|..+..++...-+. .......++......|.+....|++++|++..+.++..-|.+ ..++
T Consensus 421 ~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~ 500 (894)
T COG2909 421 QAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVAL 500 (894)
T ss_pred HHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhh
Confidence 788888999999999999888765433 333344455556667778888999999999999999886654 4567
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC----C--HHHHHHHHHHHHHcCC
Q 002273 195 YNLGVVYSELMQYDTALGCYEKAALERPM----Y--AEAYCNMGVIYKNRGD 240 (944)
Q Consensus 195 ~~la~~~~~~g~~~~A~~~~~~al~~~p~----~--~~~~~~la~~~~~~g~ 240 (944)
..+|.+..-.|++++|..+...+.+.... . ..+....+.++..+|+
T Consensus 501 sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq 552 (894)
T COG2909 501 SVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQ 552 (894)
T ss_pred hhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhH
Confidence 78888999999999999998888776322 2 2233445677778883
No 398
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=96.91 E-value=0.0023 Score=43.33 Aligned_cols=31 Identities=32% Similarity=0.502 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002273 393 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 423 (944)
Q Consensus 393 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 423 (944)
+++.+|.++..+|++++|+++|+++++++|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4445555555555555555555555555544
No 399
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.90 E-value=0.022 Score=54.13 Aligned_cols=95 Identities=20% Similarity=0.120 Sum_probs=75.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHhCCHHHHHHHHHH
Q 002273 50 DALSYANILRSRNKFVDALALYEIVLEKDSGN----------------------VEAHIGKGICLQMQNMGRLAFDSFSE 107 (944)
Q Consensus 50 ~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~----------------------~~~~~~la~~~~~~g~~~~A~~~~~~ 107 (944)
.+...|......++.+.++..+++++...... ..+...++..+...|++++|+..+++
T Consensus 8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 87 (146)
T PF03704_consen 8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQR 87 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 44556777788899999999999999864321 23445677778889999999999999
Q ss_pred HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002273 108 AVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALS 144 (944)
Q Consensus 108 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 144 (944)
++..+|.+..++..+..+|...|+..+|+..|++..+
T Consensus 88 ~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 88 ALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988754
No 400
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=96.84 E-value=0.02 Score=64.97 Aligned_cols=143 Identities=15% Similarity=0.184 Sum_probs=87.9
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCC-----HHHHHHH--HHHHHHcCCCCCcEEEccCccC
Q 002273 680 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCC-----DSVRHRF--LSTLEQLGLESLRVDLLPLILL 752 (944)
Q Consensus 680 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~-----~~~~~~~--~~~~~~~gi~~~rv~~~~~~~~ 752 (944)
.+.|+|.||++...++.+.++-.+.-|...|...||.+..+... ......+ -+.|.++ + .+|..+.++.|
T Consensus 260 ~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flWv~r~~~~~~~~~~~~~~~~~~~~~~f~e~-~-~~~g~v~~W~P- 336 (455)
T PLN02152 260 ESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLWVITDKLNREAKIEGEEETEIEKIAGFRHE-L-EEVGMIVSWCS- 336 (455)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEEEEecCcccccccccccccccccchhHHHh-c-cCCeEEEeeCC-
Confidence 34688999999999999999999999999999999987642110 0000000 1112211 2 46777778887
Q ss_pred cHHHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecC--CCcccccchhHHHhh---cCCcccc----cCCHHHHHH
Q 002273 753 NHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVHAHNVGVSLLTK---VGLKHLI----AKNEDEYVQ 823 (944)
Q Consensus 753 ~~~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~--g~~~~~r~~~~~l~~---~gl~~~v----~~~~~~y~~ 823 (944)
+.+.|.. ..+-.|+ ..+|.+|++||+++|||+|++| ++.+.. +..+.. +|+.-.. .-+.++..+
T Consensus 337 Q~~iL~h-~~vg~fv---tH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~n---a~~~~~~~~~G~~~~~~~~~~~~~e~l~~ 409 (455)
T PLN02152 337 QIEVLRH-RAVGCFV---THCGWSSSLESLVLGVPVVAFPMWSDQPAN---AKLLEEIWKTGVRVRENSEGLVERGEIRR 409 (455)
T ss_pred HHHHhCC-cccceEE---eeCCcccHHHHHHcCCCEEeccccccchHH---HHHHHHHhCceEEeecCcCCcCcHHHHHH
Confidence 5555432 2333455 3588899999999999999998 444322 223322 2332111 114566666
Q ss_pred HHHHHhcCH
Q 002273 824 LALQLASDV 832 (944)
Q Consensus 824 ~a~~l~~d~ 832 (944)
...++..|+
T Consensus 410 av~~vm~~~ 418 (455)
T PLN02152 410 CLEAVMEEK 418 (455)
T ss_pred HHHHHHhhh
Confidence 666666554
No 401
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=96.81 E-value=0.013 Score=64.47 Aligned_cols=134 Identities=13% Similarity=0.158 Sum_probs=86.4
Q ss_pred CCCCeEEEecCCCCcCC-H----HHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCc
Q 002273 679 TNGFITFGSFNNLAKIT-P----KVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLN 753 (944)
Q Consensus 679 ~~~~~~f~~~~~~~K~~-~----~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~ 753 (944)
..+.+++.++++..... + .+..+..++... ++..+++...+ .+.....+.+.+.+. ++|.+.+..+ +
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~-~~~~vi~~~hn--~p~~~~~i~~~l~~~----~~v~~~~~l~-~ 249 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAER-QNVPVIFPLHN--NPRGSDIIIEKLKKY----DNVRLIEPLG-Y 249 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHH-TTEEEEEE--S---HHHHHHHHHHHTT-----TTEEEE-----H
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhc-CCCcEEEEecC--CchHHHHHHHHhccc----CCEEEECCCC-H
Confidence 45556788888887777 5 555666666665 66666665442 246667776666554 2999998876 7
Q ss_pred HHHHHhcccccEEecCCCCCCcccHH-HhhhcCCcEEecC--CCcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhc
Q 002273 754 HDHMQAYSLMDISLDTFPYAGTTTTC-ESLYMGVPCVTMA--GSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLAS 830 (944)
Q Consensus 754 ~~~~~~~~~~Di~Ld~~~~~~~~t~~-eal~~gvPvvt~~--g~~~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~l~~ 830 (944)
.+|+.+++.||+++ -+.| +.. ||.++|+|||++. |+...+|.. |-.-+|..|.++-.+..-+...
T Consensus 250 ~~~l~ll~~a~~vv----gdSs-GI~eEa~~lg~P~v~iR~~geRqe~r~~-------~~nvlv~~~~~~I~~ai~~~l~ 317 (346)
T PF02350_consen 250 EEYLSLLKNADLVV----GDSS-GIQEEAPSLGKPVVNIRDSGERQEGRER-------GSNVLVGTDPEAIIQAIEKALS 317 (346)
T ss_dssp HHHHHHHHHESEEE----ESSH-HHHHHGGGGT--EEECSSS-S-HHHHHT-------TSEEEETSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhcceEEE----EcCc-cHHHHHHHhCCeEEEecCCCCCHHHHhh-------cceEEeCCCHHHHHHHHHHHHh
Confidence 89999999999998 5666 788 9999999999985 666666664 5555666777777666666666
Q ss_pred CH
Q 002273 831 DV 832 (944)
Q Consensus 831 d~ 832 (944)
+.
T Consensus 318 ~~ 319 (346)
T PF02350_consen 318 DK 319 (346)
T ss_dssp -H
T ss_pred Ch
Confidence 63
No 402
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.80 E-value=0.59 Score=50.32 Aligned_cols=61 Identities=26% Similarity=0.372 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 002273 340 DMAIVFYELAFHFNPHCAEACNNLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 405 (944)
Q Consensus 340 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 405 (944)
..|...|.++.... ++.+.+.+|.+|.. ..++++|..+|+++.+... ....+.++ ++...|
T Consensus 172 ~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 172 KKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred HhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 36777777766655 56777888877755 3478888888888887766 77777777 666555
No 403
>PLN02534 UDP-glycosyltransferase
Probab=96.76 E-value=0.018 Score=66.04 Aligned_cols=106 Identities=16% Similarity=0.103 Sum_probs=71.8
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHH-HHHHHHcCCCCCcEEEccCccCcHHHHH
Q 002273 680 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRF-LSTLEQLGLESLRVDLLPLILLNHDHMQ 758 (944)
Q Consensus 680 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~-~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 758 (944)
...|+|-||++...+++.-+.-.+.-|...+...||.+..+...+.....+ -+-|.+. +...++++.++.| +.+.+
T Consensus 282 ~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~flW~~r~~~~~~~~~~~~~p~gf~~~-~~~~g~~v~~w~p-q~~iL- 358 (491)
T PLN02534 282 PRSVIYACLGSLCRLVPSQLIELGLGLEASKKPFIWVIKTGEKHSELEEWLVKENFEER-IKGRGLLIKGWAP-QVLIL- 358 (491)
T ss_pred CCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEecCccccchhhhcCchhhHHh-hccCCeeccCCCC-HHHHh-
Confidence 356889999999999998888878889999999999986321111111111 0122221 2245677788887 44444
Q ss_pred hcccccE--EecCCCCCCcccHHHhhhcCCcEEecCC
Q 002273 759 AYSLMDI--SLDTFPYAGTTTTCESLYMGVPCVTMAG 793 (944)
Q Consensus 759 ~~~~~Di--~Ld~~~~~~~~t~~eal~~gvPvvt~~g 793 (944)
...+| |+ ..+|.+|++||+++|||+|++|-
T Consensus 359 --~h~~v~~fv---tH~G~ns~~ea~~~GvP~v~~P~ 390 (491)
T PLN02534 359 --SHPAIGGFL---THCGWNSTIEGICSGVPMITWPL 390 (491)
T ss_pred --cCCccceEE---ecCccHHHHHHHHcCCCEEeccc
Confidence 33444 44 35888999999999999999985
No 404
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.75 E-value=0.096 Score=57.02 Aligned_cols=150 Identities=15% Similarity=0.076 Sum_probs=119.5
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCC------------hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHH
Q 002273 310 AYYKKALYYNWHYADAMYNLGVAYGEMLK------------FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAV 377 (944)
Q Consensus 310 ~~~~~al~~~p~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 377 (944)
..+++.++.+|.+.++|..+....-..-. .+..+.+|++|++.+|++...+..+-.+..+..+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45778889999999999998876655432 456788999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCC------------------CCHHHHHHHHHHHH
Q 002273 378 ECYQMALSIKPNFSQSLNNLGVVYTV---QGKMDAAAEMIEKAIAANP------------------TYAEAYNNLGVLYR 436 (944)
Q Consensus 378 ~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~~A~~~l~~al~~~p------------------~~~~a~~~la~~~~ 436 (944)
+.+++++..+|++...|..+-..... .-.++.....|.++++.-. ....++..+...+.
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~ 165 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLR 165 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999888776555443 3357788888888776411 01345677788889
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCh
Q 002273 437 DAGSISLAIDAYEQCLKIDPDSR 459 (944)
Q Consensus 437 ~~g~~~eA~~~~~~al~l~P~~~ 459 (944)
..|..+.|+..++-.++++=-.+
T Consensus 166 ~aG~~E~Ava~~Qa~lE~n~~~P 188 (321)
T PF08424_consen 166 QAGYTERAVALWQALLEFNFFRP 188 (321)
T ss_pred HCCchHHHHHHHHHHHHHHcCCc
Confidence 99999999999999999864333
No 405
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.74 E-value=0.0014 Score=67.98 Aligned_cols=91 Identities=24% Similarity=0.277 Sum_probs=71.9
Q ss_pred HHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002273 368 KDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 447 (944)
Q Consensus 368 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~ 447 (944)
+..|.+++|++.|..+++++|.....+...+.++.++++...|+.-+..+++++|+...-|-..+.....+|++++|...
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 34577788888888888888888888888888888888888888888888888888777777778888888888888888
Q ss_pred HHHHHhhCCCC
Q 002273 448 YEQCLKIDPDS 458 (944)
Q Consensus 448 ~~~al~l~P~~ 458 (944)
++.+.+++-+-
T Consensus 205 l~~a~kld~dE 215 (377)
T KOG1308|consen 205 LALACKLDYDE 215 (377)
T ss_pred HHHHHhccccH
Confidence 88887776553
No 406
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.74 E-value=0.0024 Score=43.29 Aligned_cols=32 Identities=41% Similarity=0.817 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002273 426 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 457 (944)
Q Consensus 426 ~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~ 457 (944)
++++.+|.+|..+|++++|+++|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 46777777777778888888888877777774
No 407
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.73 E-value=0.074 Score=51.29 Aligned_cols=150 Identities=12% Similarity=0.019 Sum_probs=97.9
Q ss_pred HHHHHHhCCCHH---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHH
Q 002273 54 YANILRSRNKFV---DALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA---CAHTHCGILYK 127 (944)
Q Consensus 54 ~A~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~ 127 (944)
.|..|++..+.+ +|-..|+++++.- ..+.. +.....++....++.+. .+-..++..+.
T Consensus 37 fGW~ywq~~q~~q~~~AS~~Y~~~i~~~---------------~ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~v 100 (207)
T COG2976 37 FGWRYWQSHQVEQAQEASAQYQNAIKAV---------------QAKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEV 100 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------hcCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHH
Confidence 344444444433 6677777766532 12222 44444555555555543 24566788888
Q ss_pred HcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 002273 128 DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQY 207 (944)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 207 (944)
..|++++|+..++.++....+. ...+.+-.+++.+...+|.+++|+..+...-.. .-.+......|.++...|+-
T Consensus 101 e~~~~d~A~aqL~~~l~~t~De----~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~-~w~~~~~elrGDill~kg~k 175 (207)
T COG2976 101 EANNLDKAEAQLKQALAQTKDE----NLKALAALRLARVQLQQKKADAALKTLDTIKEE-SWAAIVAELRGDILLAKGDK 175 (207)
T ss_pred hhccHHHHHHHHHHHHccchhH----HHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc-cHHHHHHHHhhhHHHHcCch
Confidence 8999999999999888654332 123445677888888999999999888754321 11233456779999999999
Q ss_pred HHHHHHHHHHHHhCCCC
Q 002273 208 DTALGCYEKAALERPMY 224 (944)
Q Consensus 208 ~~A~~~~~~al~~~p~~ 224 (944)
++|...|+++++..++.
T Consensus 176 ~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 176 QEARAAYEKALESDASP 192 (207)
T ss_pred HHHHHHHHHHHHccCCh
Confidence 99999999999886543
No 408
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=96.70 E-value=0.0084 Score=66.03 Aligned_cols=113 Identities=9% Similarity=0.038 Sum_probs=75.5
Q ss_pred cCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCC------------CCCCcc
Q 002273 709 VPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTF------------PYAGTT 776 (944)
Q Consensus 709 ~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~------------~~~~~~ 776 (944)
.|+.+|.+.|.+... . .. .++|.|.|.++ .++....|.. |+.|-+. .++...
T Consensus 188 ~~~~~l~i~G~g~~~----~---------~~-~~~V~f~G~~~-~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~ 251 (333)
T PRK09814 188 SQGIKLTVFGPNPED----L---------EN-SANISYKGWFD-PEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPH 251 (333)
T ss_pred CCCCeEEEECCCccc----c---------cc-CCCeEEecCCC-HHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchH
Confidence 578899998866311 1 22 47999999988 5777777776 6554322 355666
Q ss_pred cHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 002273 777 TTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDL 845 (944)
Q Consensus 777 t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~ 845 (944)
-+.++|++|+|||+...... +.+... +-..++++|.++..+....+ +.+.+.+|++..++.
T Consensus 252 K~~~ymA~G~PVI~~~~~~~-----~~~V~~-~~~G~~v~~~~el~~~l~~~--~~~~~~~m~~n~~~~ 312 (333)
T PRK09814 252 KLSLYLAAGLPVIVWSKAAI-----ADFIVE-NGLGFVVDSLEELPEIIDNI--TEEEYQEMVENVKKI 312 (333)
T ss_pred HHHHHHHCCCCEEECCCccH-----HHHHHh-CCceEEeCCHHHHHHHHHhc--CHHHHHHHHHHHHHH
Confidence 68899999999999443211 123333 33344556888888877775 457788888888774
No 409
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.69 E-value=0.98 Score=51.52 Aligned_cols=127 Identities=13% Similarity=0.085 Sum_probs=65.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHH---HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH
Q 002273 115 NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV---LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA 191 (944)
Q Consensus 115 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~---~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 191 (944)
++..|..++......-.++-|...|-+.-.. +.-. ....+..+ -...+.+-.--|++++|.+.|-.+-+.+
T Consensus 691 HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gik-~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD---- 764 (1189)
T KOG2041|consen 691 HPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGIK-LVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD---- 764 (1189)
T ss_pred chHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cchh-HHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh----
Confidence 4566666666666666666666555543211 1100 00000111 0122333334478888888776543221
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002273 192 PAYYNLGVVYSELMQYDTALGCYEKAALER--PMYAEAYCNMGVIYKNRGDLESAIACYERC 251 (944)
Q Consensus 192 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 251 (944)
.-..++.+.|+|-...++++..-... ..-..++.++|..+..+..+++|.++|.+.
T Consensus 765 ----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 765 ----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred ----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 11234556666666555554321111 112357777788888888888888877765
No 410
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=96.68 E-value=0.026 Score=62.43 Aligned_cols=78 Identities=12% Similarity=0.186 Sum_probs=59.0
Q ss_pred HHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCc----ccccchhHHHhhcCCcccccC---CHHHHHHHHH
Q 002273 755 DHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSV----HAHNVGVSLLTKVGLKHLIAK---NEDEYVQLAL 826 (944)
Q Consensus 755 ~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~----~~~r~~~~~l~~~gl~~~v~~---~~~~y~~~a~ 826 (944)
+.-..|..+|+++ . +|++|+.|++++|+|.|..|=.. .....-+..+...|....+.. +.+...+...
T Consensus 245 ~m~~~~~~adlvI----sr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~~g~~~~l~~~~~~~~~l~~~l~ 320 (352)
T PRK12446 245 ELPDILAITDFVI----SRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFERQGYASVLYEEDVTVNSLIKHVE 320 (352)
T ss_pred hHHHHHHhCCEEE----ECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHHCCCEEEcchhcCCHHHHHHHHH
Confidence 4556788899999 5 68999999999999999886321 234456778888888766543 5678888888
Q ss_pred HHhcCHHHHH
Q 002273 827 QLASDVTALA 836 (944)
Q Consensus 827 ~l~~d~~~~~ 836 (944)
.+.+|++.++
T Consensus 321 ~ll~~~~~~~ 330 (352)
T PRK12446 321 ELSHNNEKYK 330 (352)
T ss_pred HHHcCHHHHH
Confidence 8888986654
No 411
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=96.65 E-value=1.5 Score=48.49 Aligned_cols=75 Identities=16% Similarity=0.182 Sum_probs=67.8
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHhcCCCCHHHHHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNM-GRLAFDSFSEAVKLDPQNACAHTH 121 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~ 121 (944)
++..|+.......+.+.+.+--.+|.+++..+|++++.|..-|.-.+..+. .+.|...|.++++.+|+++..|..
T Consensus 104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~e 179 (568)
T KOG2396|consen 104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKE 179 (568)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHH
Confidence 778888888888888889999999999999999999999999988887776 999999999999999999877644
No 412
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.59 E-value=1.6 Score=47.81 Aligned_cols=375 Identities=11% Similarity=0.012 Sum_probs=194.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC--C-------------
Q 002273 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ--N------------- 115 (944)
Q Consensus 51 ~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~------------- 115 (944)
+..+....+-.++.+.-...+-..-+..|..+...+..|...++.+++.+|++.+....+.-.. .
T Consensus 48 l~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~d 127 (549)
T PF07079_consen 48 LGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSD 127 (549)
T ss_pred HhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhH
Confidence 3333444455567777777777766778888888899999999999999999988776554111 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----ChhHHhHHHHHHHHHHHHHHH----cCChHHHHHHHH-----
Q 002273 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPS-----YKPAAECLAIVLTDLGTSLKL----AGNTQDGIQKYY----- 181 (944)
Q Consensus 116 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~la~~~~~lg~~~~~----~g~~~~A~~~~~----- 181 (944)
...-...+.++...|++.++...+++.+..--. +.+.+.. +-..+|..|.. ....+-+..+|+
T Consensus 128 f~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~---~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY 204 (549)
T PF07079_consen 128 FFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR---AVLMLSRSYFLELKESMSSDLYPDYYEMILFY 204 (549)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH---HHHHHhHHHHHHHHHhcccccChHHHHHHHHH
Confidence 112234678899999999999999988764322 1222111 11112222211 111111111111
Q ss_pred --HHHhh--------CCCC---------------------HHHHHHHHHHHHH--------------cCCHHHHHHHHHH
Q 002273 182 --EALKI--------DPHY---------------------APAYYNLGVVYSE--------------LMQYDTALGCYEK 216 (944)
Q Consensus 182 --~al~~--------~p~~---------------------~~~~~~la~~~~~--------------~g~~~~A~~~~~~ 216 (944)
+.-.. -|.. ..++.+..+.|.. ..+.+++....+.
T Consensus 205 ~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~~~e~~~~~ce~ 284 (549)
T PF07079_consen 205 LKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMSDPEQVGHFCEA 284 (549)
T ss_pred HHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhcChHHHHHHHHH
Confidence 11111 1110 1111111111100 0122222222222
Q ss_pred HHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCC
Q 002273 217 AALE-----RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNF 291 (944)
Q Consensus 217 al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~ 291 (944)
.... ...-....-.+-....++++..+|.+++.-....+|+.......+ .....+. .....+..
T Consensus 285 ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kll-ls~~~lq---------~Iv~~DD~- 353 (549)
T PF07079_consen 285 IASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLL-LSPKVLQ---------DIVCEDDE- 353 (549)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhh-cCHHHHH---------HHHhcchH-
Confidence 1111 001112222333334556777777777777777777754221111 0000000 00000000
Q ss_pred CchhHHHhhhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCC-hHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 002273 292 QSPFFELVKLEGDINQGVAYYKKALYYNWHY---ADAMYNLGVAYGEMLK-FDMAIVFYELAFHFNPHCAEACNNLGVIY 367 (944)
Q Consensus 292 ~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~ 367 (944)
..-+...=+..++.+-..+-+. +.-+..-|.-+.+.|. -++|+.+++.+++..+.+.+..+..-..
T Consensus 354 ---------~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~f- 423 (549)
T PF07079_consen 354 ---------SYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLF- 423 (549)
T ss_pred ---------HHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHH-
Confidence 0111122233333333333332 3344555666777776 8889999999998888776433322111
Q ss_pred HHCCCHHHHHH--HHHHHHhh---------CC---CCHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 002273 368 KDRDNLDKAVE--CYQMALSI---------KP---NFSQSLNNL--GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 431 (944)
Q Consensus 368 ~~~g~~~~A~~--~~~~al~~---------~p---~~~~~~~~l--a~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~l 431 (944)
-...|.+|+. .+-+.+.+ .| .+.+.-+.| |..++.+|+|.++.-+-.-..++.| .+.++..+
T Consensus 424 -vKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLl 501 (549)
T PF07079_consen 424 -VKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLL 501 (549)
T ss_pred -HHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHH
Confidence 1112333322 22222222 22 233444444 4456789999999999999999999 69999999
Q ss_pred HHHHHHcCCHHHHHHHHHHH
Q 002273 432 GVLYRDAGSISLAIDAYEQC 451 (944)
Q Consensus 432 a~~~~~~g~~~eA~~~~~~a 451 (944)
|.++....+|++|..++.+.
T Consensus 502 Gl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 502 GLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHhhHHHHHHHHHhC
Confidence 99999999999999988753
No 413
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.58 E-value=0.17 Score=55.79 Aligned_cols=142 Identities=17% Similarity=0.052 Sum_probs=97.8
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--------------C------------CCC---HHHHHHHHHH
Q 002273 316 LYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF--------------N------------PHC---AEACNNLGVI 366 (944)
Q Consensus 316 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------------~------------p~~---~~~~~~la~~ 366 (944)
+..+|-+.+++..++.++..+|+.+.|.+++++++-. + ++| ..+.+.....
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~ 112 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS 112 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence 4567888888888888888888888888888777532 1 112 2345556667
Q ss_pred HHHCCCHHHHHHHHHHHHhhCCC-CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcC
Q 002273 367 YKDRDNLDKAVECYQMALSIKPN-FSQ-SLNNLGVVYTVQGKMDAAAEMIEKAIAANP-----TYAEAYNNLGVLYRDAG 439 (944)
Q Consensus 367 ~~~~g~~~~A~~~~~~al~~~p~-~~~-~~~~la~~~~~~g~~~~A~~~l~~al~~~p-----~~~~a~~~la~~~~~~g 439 (944)
+.+.|-+..|.++.+-.+.++|. ++- +++.+-....+.++++--++.++....... ..+..-+..+.++...+
T Consensus 113 L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~ 192 (360)
T PF04910_consen 113 LGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLE 192 (360)
T ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhc
Confidence 77888888888888888888887 654 444444445566777766666666544211 12356677777777777
Q ss_pred CH---------------HHHHHHHHHHHhhCCC
Q 002273 440 SI---------------SLAIDAYEQCLKIDPD 457 (944)
Q Consensus 440 ~~---------------~eA~~~~~~al~l~P~ 457 (944)
+. ++|...+++|+...|.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 193 KEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred CccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 77 7888888888887774
No 414
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.55 E-value=2.5 Score=49.71 Aligned_cols=159 Identities=13% Similarity=0.001 Sum_probs=114.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH---HcCCHHHHHHH
Q 002273 62 NKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK---DEGRLVEAAES 138 (944)
Q Consensus 62 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~g~~~~A~~~ 138 (944)
+.-++=+.-++.-+..++.+...+..+..++.+.|++++-...-.++.++.|..+..|.....-.. ..++..++...
T Consensus 93 ~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~ 172 (881)
T KOG0128|consen 93 GGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEEL 172 (881)
T ss_pred ccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHH
Confidence 445555666777777888888899999999999999999888888888888888887766554332 34677888889
Q ss_pred HHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC-------CHHHHHHHHHHHHHcCCHHHHH
Q 002273 139 YHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH-------YAPAYYNLGVVYSELMQYDTAL 211 (944)
Q Consensus 139 ~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-------~~~~~~~la~~~~~~g~~~~A~ 211 (944)
|++++.-. .....+...+......+..+...++++.-...|.+++..--. ....+..+-..|...-..++-+
T Consensus 173 ~ekal~dy-~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~ 251 (881)
T KOG0128|consen 173 FEKALGDY-NSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVI 251 (881)
T ss_pred HHHHhccc-ccchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99998644 344556666666666677777778999999999999876221 2344555556666655566777
Q ss_pred HHHHHHHHhC
Q 002273 212 GCYEKAALER 221 (944)
Q Consensus 212 ~~~~~al~~~ 221 (944)
.++...+...
T Consensus 252 a~~~~el~~~ 261 (881)
T KOG0128|consen 252 ALFVRELKQP 261 (881)
T ss_pred HHHHHHHhcc
Confidence 7777776653
No 415
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=96.51 E-value=0.15 Score=55.54 Aligned_cols=114 Identities=11% Similarity=-0.030 Sum_probs=82.8
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHhCC------------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002273 69 ALYEIVLEKDSGNVEAHIGKGICLQMQNM------------GRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAA 136 (944)
Q Consensus 69 ~~~~~al~~~p~~~~~~~~la~~~~~~g~------------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 136 (944)
..|++.++.+|.+.++|+.+....-..-. .+.-+..|++|++.+|++...+..+-.+..+..+.++..
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 45778888899999999888876544322 356678899999999999998888888888888888989
Q ss_pred HHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 002273 137 ESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI 186 (944)
Q Consensus 137 ~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (944)
+.+++++..+|++...+..+.. .-......-.+.+....|.++++.
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~----~~q~~~~~f~v~~~~~~y~~~l~~ 131 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLD----FRQSNFASFTVSDVRDVYEKCLRA 131 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHH----HHHHHhccCcHHHHHHHHHHHHHH
Confidence 9999999999987776543222 111112233566777777766653
No 416
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=96.50 E-value=0.022 Score=62.52 Aligned_cols=139 Identities=19% Similarity=0.233 Sum_probs=87.9
Q ss_pred CcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCC
Q 002273 692 AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFP 771 (944)
Q Consensus 692 ~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~ 771 (944)
.++-|.++++-.++.+..|+-++++...+ ....+.+.+.+...+.... +.+.. .+-...+..+|++|
T Consensus 199 ~rllP~~l~aa~~l~~~~p~l~fvvp~a~---~~~~~~i~~~~~~~~~~~~-~~~~~-----~~~~~~m~~ad~al---- 265 (373)
T PF02684_consen 199 KRLLPIFLEAAKLLKKQRPDLQFVVPVAP---EVHEELIEEILAEYPPDVS-IVIIE-----GESYDAMAAADAAL---- 265 (373)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEecCC---HHHHHHHHHHHHhhCCCCe-EEEcC-----CchHHHHHhCcchh----
Confidence 35569999999999999999999986543 2333335555555555332 33221 22344567799998
Q ss_pred CCCcccHHHhhhcCCcEE-ecCCCcccccchhHH--HhhcCCccccc------------CCHHHHHHHHHHHhcCHHHHH
Q 002273 772 YAGTTTTCESLYMGVPCV-TMAGSVHAHNVGVSL--LTKVGLKHLIA------------KNEDEYVQLALQLASDVTALA 836 (944)
Q Consensus 772 ~~~~~t~~eal~~gvPvv-t~~g~~~~~r~~~~~--l~~~gl~~~v~------------~~~~~y~~~a~~l~~d~~~~~ 836 (944)
-..||.|+|+..+|+|.| +.....+--.++--+ ..-+||+.+|+ -+++.-.+.+..+..|++.+.
T Consensus 266 ~~SGTaTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk~~~isL~Niia~~~v~PEliQ~~~~~~~i~~~~~~ll~~~~~~~ 345 (373)
T PF02684_consen 266 AASGTATLEAALLGVPMVVAYKVSPLTYFIAKRLVKVKYISLPNIIAGREVVPELIQEDATPENIAAELLELLENPEKRK 345 (373)
T ss_pred hcCCHHHHHHHHhCCCEEEEEcCcHHHHHHHHHhhcCCEeechhhhcCCCcchhhhcccCCHHHHHHHHHHHhcCHHHHH
Confidence 678999999999999955 444433322222222 12346654442 377888888888999987655
Q ss_pred HHHHHHH
Q 002273 837 NLRMSLR 843 (944)
Q Consensus 837 ~~r~~~~ 843 (944)
......+
T Consensus 346 ~~~~~~~ 352 (373)
T PF02684_consen 346 KQKELFR 352 (373)
T ss_pred HHHHHHH
Confidence 4444443
No 417
>PRK11619 lytic murein transglycosylase; Provisional
Probab=96.37 E-value=3.5 Score=49.33 Aligned_cols=123 Identities=10% Similarity=-0.056 Sum_probs=80.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 002273 330 GVAYGEMLKFDMAIVFYELAFHFNPHC----AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG 405 (944)
Q Consensus 330 a~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 405 (944)
+..-....+.+.|...+.+......-+ ..++..+|.-....+...+|...+..+..... +.........+....+
T Consensus 248 ~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~-~~~~~e~r~r~Al~~~ 326 (644)
T PRK11619 248 AFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ-STSLLERRVRMALGTG 326 (644)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC-CcHHHHHHHHHHHHcc
Confidence 333345556677777777654443322 22334445444444335677777776554322 3333444444555888
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002273 406 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 453 (944)
Q Consensus 406 ~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~ 453 (944)
+++.+...+...-....+.....|.+|+.+...|+.++|..+|+++..
T Consensus 327 dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 327 DRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred CHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 998888887776444456688999999999999999999999999854
No 418
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.28 E-value=2.8 Score=48.06 Aligned_cols=173 Identities=18% Similarity=0.100 Sum_probs=89.5
Q ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHH----------HHHHHH
Q 002273 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAH----------THCGIL 125 (944)
Q Consensus 56 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~----------~~la~~ 125 (944)
..+...=..++|+++.+ .+| ++..|..++......-.++-|...|-+.-.. +.- ..- ...+.+
T Consensus 671 ~~Lve~vgledA~qfiE----dnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~Gi-k~vkrl~~i~s~~~q~aei 743 (1189)
T KOG2041|consen 671 MNLVEAVGLEDAIQFIE----DNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDY-AGI-KLVKRLRTIHSKEQQRAEI 743 (1189)
T ss_pred HHHHHHhchHHHHHHHh----cCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cch-hHHHHhhhhhhHHHHhHhH
Confidence 33444455667766543 344 6889999999988888888888777665321 110 011 223444
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHH
Q 002273 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID--PHYAPAYYNLGVVYSE 203 (944)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~ 203 (944)
-.--|++++|.+.|-.+-+.+- | ...+...|++-...++++..-.-+ .....++.++|..+..
T Consensus 744 ~~~~g~feeaek~yld~drrDL---------A------ielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~ 808 (1189)
T KOG2041|consen 744 SAFYGEFEEAEKLYLDADRRDL---------A------IELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAE 808 (1189)
T ss_pred hhhhcchhHhhhhhhccchhhh---------h------HHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHH
Confidence 4445788888777754322110 0 011223344444444443211111 1113345555555555
Q ss_pred cCCHHHHHHHHHHH----------------------HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002273 204 LMQYDTALGCYEKA----------------------ALERPMYAEAYCNMGVIYKNRGDLESAIACYER 250 (944)
Q Consensus 204 ~g~~~~A~~~~~~a----------------------l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 250 (944)
+..+++|.++|.+. ...-|++.+.+-.+|..+...|.-++|.+.|-+
T Consensus 809 ~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 809 MMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 55555555555443 222355555555666666666666666665544
No 419
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.28 E-value=0.014 Score=59.51 Aligned_cols=67 Identities=27% Similarity=0.343 Sum_probs=61.2
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhhHHH
Q 002273 401 YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLL 467 (944)
Q Consensus 401 ~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~~~ 467 (944)
..+.|+.++|...|+.|+.+.|++++++..+|......++.-+|-.+|-+|+.++|.+.++..|+.-
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 4677999999999999999999999999999999999999999999999999999999998887643
No 420
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=96.27 E-value=2.6 Score=51.98 Aligned_cols=102 Identities=18% Similarity=0.062 Sum_probs=68.2
Q ss_pred ChHHHHHHHHHHHhC-------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHH
Q 002273 47 EGKDALSYANILRSR-------NKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAH 119 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~-------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 119 (944)
.-++.+..|..++.+ ..+.+|+..|++. ...|.-+--|...|.+|..+|++++-+++|.-+++..|+.|..-
T Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (932)
T PRK13184 511 GYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEIS 589 (932)
T ss_pred chHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccH
Confidence 345566666555443 2578888888874 44677788899999999999999999999999999999887643
Q ss_pred HHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCC
Q 002273 120 THCGILYKDE-----GRLVEAAESYHKALSADPSY 149 (944)
Q Consensus 120 ~~la~~~~~~-----g~~~~A~~~~~~al~~~p~~ 149 (944)
...-.+-+++ .+-..|....--++...|..
T Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (932)
T PRK13184 590 RLRDHLVYRLHESLYKHRREALVFMLLALWIAPEK 624 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 3332222221 12234444445555555554
No 421
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=96.27 E-value=0.2 Score=55.19 Aligned_cols=84 Identities=17% Similarity=0.102 Sum_probs=64.7
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------CC------------CC---HHHHHHHHH
Q 002273 183 ALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE--------------RP------------MY---AEAYCNMGV 233 (944)
Q Consensus 183 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------------~p------------~~---~~~~~~la~ 233 (944)
.++.+|-+.+++..++.++..+|+.+.|.+.+++++-. ++ .| ..+++....
T Consensus 32 ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~ 111 (360)
T PF04910_consen 32 LLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQ 111 (360)
T ss_pred HHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHH
Confidence 34679999999999999999999999999999998631 11 12 135566677
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHH
Q 002273 234 IYKNRGDLESAIACYERCLAVSPN-FEIAKNNMA 266 (944)
Q Consensus 234 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la 266 (944)
.+.+.|-+..|+++.+-.+.++|. ++-......
T Consensus 112 ~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~I 145 (360)
T PF04910_consen 112 SLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFI 145 (360)
T ss_pred HHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHH
Confidence 788899999999999999999998 655443333
No 422
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.14 E-value=1.2 Score=49.91 Aligned_cols=298 Identities=12% Similarity=-0.009 Sum_probs=159.6
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCCh--HHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 002273 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT--QDGIQKYYEALKIDPHYAPAYYNLGVVYS 202 (944)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~--~~A~~~~~~al~~~p~~~~~~~~la~~~~ 202 (944)
+.-..|+-+++...+-++-...+-...........+......+...++. +...+.+.......|.++......+..+.
T Consensus 199 vvgf~g~r~egl~~Lw~~a~~~s~~~~i~~l~L~~y~~~~~~~~~~p~~d~~~~~~~Ll~~~~~~p~ga~wll~~ar~l~ 278 (546)
T KOG3783|consen 199 VVGFSGDRDEGLRLLWEAAKQRNFRGAIALLALLCYYQFISFVLGTPNPDGEECEKALKKYRKRYPKGALWLLMEARILS 278 (546)
T ss_pred HHhhcccHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHhHHHHHhCCCCccHHHHHHHHHH
Confidence 3444566667766666554443222222111122223333333333333 44445555556668888888889999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH-HHHHHhhhhhhhh
Q 002273 203 ELMQYDTALGCYEKAALERPM--YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA-IALTDLGTKTYGR 279 (944)
Q Consensus 203 ~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la-~~l~~~~~~~~~~ 279 (944)
..|+.+.|+..++..++..-. ..-.++.+|.++..+.+|..|...+....+.+.-....+..++ .++..-...
T Consensus 279 ~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdWS~a~Y~Yfa~cc~l~~~~~---- 354 (546)
T KOG3783|consen 279 IKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDWSHAFYTYFAGCCLLQNWEV---- 354 (546)
T ss_pred HcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhhhHHHHHHHHHHHHhccHHH----
Confidence 999988888888887761111 2335677888888899999999998888776544333333333 333221111
Q ss_pred HHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHH---HHhCCCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 002273 280 ALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKA---LYYNWHYAD---AMYNLGVAYGEMLKFDMAIVFYELAFHFN 353 (944)
Q Consensus 280 a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~a---l~~~p~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~ 353 (944)
.....++-+++..+.+.. +...|++.. .....+.-+...+. .+
T Consensus 355 ------------------~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~-------------~~ 403 (546)
T KOG3783|consen 355 ------------------NQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGP-------------LN 403 (546)
T ss_pred ------------------HHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhcccc-------------cc
Confidence 011112333333332222 222222111 11111111111110 11
Q ss_pred CCCHH--HHHHHHHHHHHCC--CHHHHHHHHHHHHh---h-CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Q 002273 354 PHCAE--ACNNLGVIYKDRD--NLDKAVECYQMALS---I-KPNFS-QSLNNLGVVYTVQGKMDAAAEMIEKAIAAN--- 421 (944)
Q Consensus 354 p~~~~--~~~~la~~~~~~g--~~~~A~~~~~~al~---~-~p~~~-~~~~~la~~~~~~g~~~~A~~~l~~al~~~--- 421 (944)
+.... -++.++.++.... ...+.. -++..++ . ++++. --++.+|.++..+|+...|..+|+..++..
T Consensus 404 ~~~~la~P~~El~Y~Wngf~~~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~ 482 (546)
T KOG3783|consen 404 ASILLASPYYELAYFWNGFSRMSKNELE-KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKR 482 (546)
T ss_pred ccccccchHHHHHHHHhhcccCChhhHH-HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh
Confidence 11111 1233333333211 122222 1111111 1 22221 245667999999999999999999887541
Q ss_pred CC----CHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCC
Q 002273 422 PT----YAEAYNNLGVLYRDAGS-ISLAIDAYEQCLKIDPDS 458 (944)
Q Consensus 422 p~----~~~a~~~la~~~~~~g~-~~eA~~~~~~al~l~P~~ 458 (944)
.+ .|.+++.+|.+|..+|. ..++.+++.+|-+...++
T Consensus 483 ~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~dY 524 (546)
T KOG3783|consen 483 TEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASDY 524 (546)
T ss_pred ccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccc
Confidence 11 27799999999999999 999999999998877654
No 423
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.08 E-value=0.035 Score=48.46 Aligned_cols=92 Identities=18% Similarity=0.152 Sum_probs=75.7
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhCC-----------HHHHHHHHHHHHhcCCCCHHHH
Q 002273 54 YANILRSRNKFVDALALYEIVLEKDSGNV---EAHIGKGICLQMQNM-----------GRLAFDSFSEAVKLDPQNACAH 119 (944)
Q Consensus 54 ~A~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~-----------~~~A~~~~~~al~~~p~~~~~~ 119 (944)
+|..++.+|++-+|+++.+..+...+++. ..+...|.++..+.. .-.++++|.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 57889999999999999999999888765 566777888765542 2358999999999999998889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Q 002273 120 THCGILYKDEGRLVEAAESYHKALSA 145 (944)
Q Consensus 120 ~~la~~~~~~g~~~~A~~~~~~al~~ 145 (944)
+.+|.-+-....|+++....++++.+
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 99988877777888888888887765
No 424
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=96.05 E-value=0.072 Score=57.25 Aligned_cols=202 Identities=13% Similarity=0.041 Sum_probs=122.3
Q ss_pred hHhCCccEEEecCCCCCCCchhhhccCCcceeeecccCCCCCCCCCccEEEecCCCCCcccccccccceEEcCCCccccC
Q 002273 585 VREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYT 664 (944)
Q Consensus 585 i~~d~idilvdl~g~t~~~~~~~~a~r~ApvQ~~~~G~p~t~g~~~~Dy~i~d~~~~p~~~~~~~~e~~~~lp~~~~~~~ 664 (944)
+.....|++|=..+.|...-+.+=.....++.+..++.|..- ...+|++|+-.+=.++ -..+++..++.....+
T Consensus 53 ~~~~~pdLiIsaGr~t~~~~~~l~r~~gg~~~~V~i~~P~~~-~~~FDlvi~p~HD~~~-----~~~Nvl~t~ga~~~i~ 126 (311)
T PF06258_consen 53 LEPPWPDLIISAGRRTAPAALALRRASGGRTKTVQIMDPRLP-PRPFDLVIVPEHDRLP-----RGPNVLPTLGAPNRIT 126 (311)
T ss_pred ccCCCCcEEEECCCchHHHHHHHHHHcCCCceEEEEcCCCCC-ccccCEEEECcccCcC-----CCCceEecccCCCcCC
Confidence 445678999877666653333333333566678888999765 8899999974332221 2356677766543333
Q ss_pred CCCCCCCC----CCCCC--CCCCCeEEEecCCCCcCCHH----HHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHH
Q 002273 665 PSPEAGPV----CPTPA--LTNGFITFGSFNNLAKITPK----VLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTL 734 (944)
Q Consensus 665 ~~~~~~~~----~~~~~--~~~~~~~f~~~~~~~K~~~~----~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~ 734 (944)
|....... ..... -+-..|.+|--++.++++++ +++...++.+..+ ..++|....-..+.+...|.+.+
T Consensus 127 ~~~l~~a~~~~~~~~~~l~~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~vttSRRTp~~~~~~L~~~~ 205 (311)
T PF06258_consen 127 PERLAEAAAAWAPRLAALPRPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAAYG-GSLLVTTSRRTPPEAEAALRELL 205 (311)
T ss_pred HHHHHHHHHhhhhhhccCCCCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHhCC-CeEEEEcCCCCcHHHHHHHHHhh
Confidence 32111100 00111 23345778888899999998 4455566677766 56666554444556666666655
Q ss_pred HHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccc
Q 002273 735 EQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNV 800 (944)
Q Consensus 735 ~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~ 800 (944)
. +...+.+....+ ..-|++.+..+|.++-|--- -.=..||++.|+||..++-+.-.+|+
T Consensus 206 ~----~~~~~~~~~~~~-~nPy~~~La~ad~i~VT~DS--vSMvsEA~~tG~pV~v~~l~~~~~r~ 264 (311)
T PF06258_consen 206 K----DNPGVYIWDGTG-ENPYLGFLAAADAIVVTEDS--VSMVSEAAATGKPVYVLPLPGRSGRF 264 (311)
T ss_pred c----CCCceEEecCCC-CCcHHHHHHhCCEEEEcCcc--HHHHHHHHHcCCCEEEecCCCcchHH
Confidence 4 235663334444 34689999999999854321 22367999999999887655433444
No 425
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.04 E-value=0.011 Score=39.60 Aligned_cols=31 Identities=29% Similarity=0.415 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002273 427 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 457 (944)
Q Consensus 427 a~~~la~~~~~~g~~~eA~~~~~~al~l~P~ 457 (944)
+++.+|.++...|++++|++.|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 5566666666666666666666666666665
No 426
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.03 E-value=0.0058 Score=42.08 Aligned_cols=27 Identities=48% Similarity=0.797 Sum_probs=16.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002273 428 YNNLGVLYRDAGSISLAIDAYEQCLKI 454 (944)
Q Consensus 428 ~~~la~~~~~~g~~~eA~~~~~~al~l 454 (944)
+.+||.+|...|++++|+++|++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 556666667777777777777664443
No 427
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.02 E-value=0.0023 Score=64.93 Aligned_cols=149 Identities=17% Similarity=0.183 Sum_probs=100.1
Q ss_pred HHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCCCCcccH
Q 002273 699 LQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTT 778 (944)
Q Consensus 699 ~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~~~~t~ 778 (944)
+..|++|...+|--.||-.. .++..+-....+|-+.-+++|. ++.|-..++.+|++| =-.||.+
T Consensus 260 vvfw~ai~~~lpl~~l~~l~-------e~~gWq~~ad~~~kdnc~l~ls-----qqsfadiLH~adaal----gmAGTAt 323 (412)
T COG4370 260 VVFWAAIAPELPLLLLWTLE-------ERQGWQPLADRFGKDNCSLWLS-----QQSFADILHAADAAL----GMAGTAT 323 (412)
T ss_pred HHHHhccCcCCCHHHHHHHH-------HhcCcchhhhhhccCceEEEEe-----HHHHHHHHHHHHHHH----HhccchH
Confidence 56788887777644444221 1111111112244444556653 567788888899987 3578999
Q ss_pred HHhhhcCCcEEecCCCc--ccccchhHHHhhcCCcccccCCHHHHHHHHHH-HhcCHHHHHHHHHHHHHHhhcCCCCChH
Q 002273 779 CESLYMGVPCVTMAGSV--HAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQ-LASDVTALANLRMSLRDLMSKSPVCDGQ 855 (944)
Q Consensus 779 ~eal~~gvPvvt~~g~~--~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~-l~~d~~~~~~~r~~~~~~~~~~~~~~~~ 855 (944)
=++.-.|+|||.+||.. +.--.+..-.+-+|+.=.....++.-...+++ +..|++++.++|..-++|+-+ +
T Consensus 324 EQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~~~aq~a~~~~q~ll~dp~r~~air~nGqrRiGq------a 397 (412)
T COG4370 324 EQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVRPEAQAAAQAVQELLGDPQRLTAIRHNGQRRIGQ------A 397 (412)
T ss_pred HHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecCCchhhHHHHHHHHhcChHHHHHHHhcchhhccC------c
Confidence 99999999999999853 33333444457778877667777766777777 999999999999998888742 2
Q ss_pred HHHHHHHHHHHHHH
Q 002273 856 NFALGLESTYRNMW 869 (944)
Q Consensus 856 ~~~~~~e~~~~~~~ 869 (944)
+-++++-+...+||
T Consensus 398 Gaa~rIAe~l~e~a 411 (412)
T COG4370 398 GAARRIAEELGEMA 411 (412)
T ss_pred chHHHHHHHHHHhc
Confidence 45666666666665
No 428
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=96.00 E-value=0.053 Score=59.34 Aligned_cols=73 Identities=12% Similarity=0.202 Sum_probs=55.2
Q ss_pred CCcEEEccCccCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCc-ccccchhHHHhhcCCcccccCCH
Q 002273 741 SLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSV-HAHNVGVSLLTKVGLKHLIAKNE 818 (944)
Q Consensus 741 ~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~-~~~r~~~~~l~~~gl~~~v~~~~ 818 (944)
+++|.+.+..+ .++...+..||+++-. +|.+|++||+++|+|+|..|-.. +-...-+-.|...|+...+..+.
T Consensus 228 ~~~v~~~~~~~--~~~~~~l~~ad~vI~~---~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~g~~~~l~~~~ 301 (321)
T TIGR00661 228 NENVEIRRITT--DNFKELIKNAELVITH---GGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGIALEYKE 301 (321)
T ss_pred CCCEEEEECCh--HHHHHHHHhCCEEEEC---CChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHCCCEEEcChhh
Confidence 46888887653 5788888999999943 56678999999999999988643 24556777888889886664443
No 429
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=95.92 E-value=0.014 Score=39.45 Aligned_cols=30 Identities=40% Similarity=0.639 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 002273 393 SLNNLGVVYTVQGKMDAAAEMIEKAIAANP 422 (944)
Q Consensus 393 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p 422 (944)
+++.+|.+|..+|++++|+++|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 344455555555555555555555555444
No 430
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.91 E-value=0.025 Score=57.63 Aligned_cols=73 Identities=26% Similarity=0.244 Sum_probs=49.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 002273 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (944)
Q Consensus 51 ~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (944)
.+..|......|+.++|..+|+.++...|.+++++..+|......++.-+|-.+|-+++.++|.+.+++.+.+
T Consensus 119 Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~ 191 (472)
T KOG3824|consen 119 ALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRA 191 (472)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhh
Confidence 3445555666677777777777777777777777777777766666777777777777777777766665544
No 431
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=95.79 E-value=0.21 Score=55.50 Aligned_cols=90 Identities=10% Similarity=0.117 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchhHH
Q 002273 725 SVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSL 804 (944)
Q Consensus 725 ~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~ 804 (944)
..++.+.+.+. + ..+|.+.+..+ ..+++.++..||+++ -+++...-||..+|+|||++.+ ...+|-.
T Consensus 249 ~i~~~i~~~~~--~--~~~v~l~~~l~-~~~~l~Ll~~a~~vi----tdSSggi~EA~~lg~Pvv~l~~-R~e~~~~--- 315 (365)
T TIGR03568 249 IINEAIEEYVN--E--HPNFRLFKSLG-QERYLSLLKNADAVI----GNSSSGIIEAPSFGVPTINIGT-RQKGRLR--- 315 (365)
T ss_pred HHHHHHHHHhc--C--CCCEEEECCCC-hHHHHHHHHhCCEEE----EcChhHHHhhhhcCCCEEeecC-Cchhhhh---
Confidence 44555544421 1 36799999877 799999999999999 4443555899999999999753 3333322
Q ss_pred HhhcCCccc-ccCCHHHHHHHHHHHhcCH
Q 002273 805 LTKVGLKHL-IAKNEDEYVQLALQLASDV 832 (944)
Q Consensus 805 l~~~gl~~~-v~~~~~~y~~~a~~l~~d~ 832 (944)
|-.-+ |..+.++-++.+.+ +.++
T Consensus 316 ----g~nvl~vg~~~~~I~~a~~~-~~~~ 339 (365)
T TIGR03568 316 ----ADSVIDVDPDKEEIVKAIEK-LLDP 339 (365)
T ss_pred ----cCeEEEeCCCHHHHHHHHHH-HhCh
Confidence 33334 55688888877776 4554
No 432
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=95.79 E-value=0.021 Score=64.77 Aligned_cols=109 Identities=17% Similarity=0.169 Sum_probs=63.6
Q ss_pred HHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchh---HHHhhcCCc-----ccccCCH-------
Q 002273 755 DHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGV---SLLTKVGLK-----HLIAKNE------- 818 (944)
Q Consensus 755 ~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~---~~l~~~gl~-----~~v~~~~------- 818 (944)
+|-....-||+.+=|.-| .=|-|-+|+.+||||.|| ++.++ -+...++-+ ..|-+..
T Consensus 462 ~Y~dfv~GcdLgvFPSYYEPWGYTPlE~~a~gVPsIT-------TnLsGFG~~~~~~~~~~~~~GV~VvdR~~~n~~e~v 534 (633)
T PF05693_consen 462 DYYDFVRGCDLGVFPSYYEPWGYTPLECTAFGVPSIT-------TNLSGFGCWMQEHIEDPEEYGVYVVDRRDKNYDESV 534 (633)
T ss_dssp -HHHHHHHSSEEEE--SSBSS-HHHHHHHHTT--EEE-------ETTBHHHHHHHTTS-HHGGGTEEEE-SSSS-HHHHH
T ss_pred CHHHHhccCceeeeccccccccCChHHHhhcCCceee-------ccchhHHHHHHHhhccCcCCcEEEEeCCCCCHHHHH
Confidence 455556779999888877 889999999999999999 44431 112222211 1222333
Q ss_pred HHHHHHHHHHhc-CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHHh
Q 002273 819 DEYVQLALQLAS-DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRYC 873 (944)
Q Consensus 819 ~~y~~~a~~l~~-d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 873 (944)
+++.+....++. +...+..+|.+.++. |.++||+.|...++++|..+.++-.
T Consensus 535 ~~la~~l~~f~~~~~rqri~~Rn~ae~L---S~~~dW~~~~~yY~~Ay~~AL~~a~ 587 (633)
T PF05693_consen 535 NQLADFLYKFCQLSRRQRIIQRNRAERL---SDLADWKNFGKYYEKAYDLALRRAY 587 (633)
T ss_dssp HHHHHHHHHHHT--HHHHHHHHHHHHHH---GGGGBHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH---HHhCCHHHHHHHHHHHHHHHHHhcC
Confidence 333333334333 344455555544322 7889999999999999998887653
No 433
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=95.77 E-value=0.31 Score=57.48 Aligned_cols=173 Identities=13% Similarity=0.099 Sum_probs=103.6
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHh--Hc--CCceEEEecCCCCCHH----HHHHHHHHHHHcCCCCCcEEEccCc
Q 002273 681 GFITFGSFNNL--AKITPKVLQVWARILC--AV--PNSRLVVKCKPFCCDS----VRHRFLSTLEQLGLESLRVDLLPLI 750 (944)
Q Consensus 681 ~~~~f~~~~~~--~K~~~~~~~~~~~il~--~~--p~~~l~~~~~~~~~~~----~~~~~~~~~~~~gi~~~rv~~~~~~ 750 (944)
+.+++|...|+ +|..+-++....++++ .. .+.++++.|++...+. ..+.+....++-.+ ++||+|+..-
T Consensus 388 d~~~ig~v~Rl~~yKr~dLil~~i~~l~~i~~~~~~pvq~V~~Gka~p~d~~gk~~i~~i~~la~~~~~-~~kv~f~~~Y 466 (601)
T TIGR02094 388 DVLTIGFARRFATYKRADLIFRDLERLARILNNPERPVQIVFAGKAHPADGEGKEIIQRIVEFSKRPEF-RGRIVFLENY 466 (601)
T ss_pred CCcEEEEEEcchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCcccchHHHHHHHHHHHHhcccC-CCCEEEEcCC
Confidence 44567777766 8988888888777764 21 3578888877643322 34444443333223 5799997653
Q ss_pred cCcHHHHH--hcccccEEec-CCC-C-CCcccHHHhhhcCCcEEecCC-CcccccchhHHHhhcCCcccc----------
Q 002273 751 LLNHDHMQ--AYSLMDISLD-TFP-Y-AGTTTTCESLYMGVPCVTMAG-SVHAHNVGVSLLTKVGLKHLI---------- 814 (944)
Q Consensus 751 ~~~~~~~~--~~~~~Di~Ld-~~~-~-~~~~t~~eal~~gvPvvt~~g-~~~~~r~~~~~l~~~gl~~~v---------- 814 (944)
..-++ .+..+||+|- |.. + ..||+-+=||.-|++.+|.-. -.--.-- |-..|.
T Consensus 467 ---d~~lA~~i~aG~Dv~L~~Psr~~EacGtsqMka~~nGgL~~sv~DG~~~E~~~--------~~nGf~f~~~~~~~~~ 535 (601)
T TIGR02094 467 ---DINLARYLVSGVDVWLNNPRRPLEASGTSGMKAAMNGVLNLSILDGWWGEGYD--------GDNGWAIGDGEEYDDE 535 (601)
T ss_pred ---CHHHHHHHhhhheeEEeCCCCCcCCchHHHHHHHHcCCceeecccCcccccCC--------CCcEEEECCCcccccc
Confidence 33333 5688999999 664 7 889999999999999987542 1111000 111221
Q ss_pred ----cCCHHHHHH---HHH-HHhcC-HHH--HHHHHHHHHHHhhc-CCCCChHHHHHHHHHHH
Q 002273 815 ----AKNEDEYVQ---LAL-QLASD-VTA--LANLRMSLRDLMSK-SPVCDGQNFALGLESTY 865 (944)
Q Consensus 815 ----~~~~~~y~~---~a~-~l~~d-~~~--~~~~r~~~~~~~~~-~~~~~~~~~~~~~e~~~ 865 (944)
..|.+++.+ .++ .+-.| ++. -..+.+..+..|.+ .|.|++.++++++.+.|
T Consensus 536 ~~~d~~da~~l~~~L~~ai~~~yy~~~~~~~p~~W~~~~k~am~~~~~~fsw~r~a~~Y~~~y 598 (601)
T TIGR02094 536 EEQDRLDAEALYDLLENEVIPLYYDRDEKGIPADWVEMMKESIATIAPRFSTNRMVREYVDKF 598 (601)
T ss_pred ccccCCCHHHHHHHHHHHHHHHHhcCCcccCcHHHHHHHHHHHhccCCCCCHHHHHHHHHHHh
Confidence 134444333 334 44433 221 12344444455543 56899999999998876
No 434
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=95.76 E-value=0.31 Score=50.96 Aligned_cols=170 Identities=16% Similarity=0.102 Sum_probs=101.5
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHc-CCceEEE-ecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHH
Q 002273 680 NGFITFGSFNNLAKITPKVLQVWARILCAV-PNSRLVV-KCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 757 (944)
Q Consensus 680 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~-p~~~l~~-~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~ 757 (944)
.+.+|+-.-|+..+-+ .-+++...|.+.. .+.++++ .+-|.+++.-++++++...++.- ++++..+.....-.+|+
T Consensus 144 ~~~~tIlvGNSgd~SN-~Hie~L~~l~~~~~~~v~ii~PlsYp~gn~~Yi~~V~~~~~~lF~-~~~~~~L~e~l~f~eYl 221 (322)
T PRK02797 144 AGKMTILVGNSGDRSN-RHIEALRALHQQFGDNVKIIVPMGYPANNQAYIEEVRQAGLALFG-AENFQILTEKLPFDDYL 221 (322)
T ss_pred CCceEEEEeCCCCCcc-cHHHHHHHHHHHhCCCeEEEEECCcCCCCHHHHHHHHHHHHHhcC-cccEEehhhhCCHHHHH
Confidence 3445554444443333 3444445554443 3445544 34444677888899888888764 47777654444468999
Q ss_pred HhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhcCHHHHH
Q 002273 758 QAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALA 836 (944)
Q Consensus 758 ~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~l~~d~~~~~ 836 (944)
+.++.|||..=-|.= -|--|+|=.+.+|+|||...-.+ .-..|...|++=+-..+.= |....+
T Consensus 222 ~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r~n~-----fwqdl~e~gv~Vlf~~d~L-----------~~~~v~ 285 (322)
T PRK02797 222 ALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSRDNP-----FWQDLTEQGLPVLFTGDDL-----------DEDIVR 285 (322)
T ss_pred HHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEecCCc-----hHHHHHhCCCeEEecCCcc-----------cHHHHH
Confidence 999999999866654 44457888999999999844333 2345778888875322211 222222
Q ss_pred HHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 002273 837 NLRMSLRDLMSKSPVCDGQNFALGLESTYRN 867 (944)
Q Consensus 837 ~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 867 (944)
+.++++...-.+.-.|..+.++..+.++|+.
T Consensus 286 e~~rql~~~dk~~I~Ff~pn~~~~W~~~l~~ 316 (322)
T PRK02797 286 EAQRQLASVDKNIIAFFSPNYLQGWRNALAI 316 (322)
T ss_pred HHHHHHHhhCcceeeecCHhHHHHHHHHHHH
Confidence 3333332221112227777877777777754
No 435
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=95.72 E-value=6.2 Score=46.62 Aligned_cols=224 Identities=11% Similarity=0.003 Sum_probs=144.1
Q ss_pred CCCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HhCCHHHHHHHHHHHHhcCCCCHHH
Q 002273 42 TLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQ---MQNMGRLAFDSFSEAVKLDPQNACA 118 (944)
Q Consensus 42 ~~~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~---~~g~~~~A~~~~~~al~~~p~~~~~ 118 (944)
...+++......+-..+...|++++-...-.++.+..|..+..|.....-.. ..++-.++...|++++. +-+++..
T Consensus 107 ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~-dy~~v~i 185 (881)
T KOG0128|consen 107 AINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALG-DYNSVPI 185 (881)
T ss_pred cccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhc-ccccchH
Confidence 3445666777888889999999998888888888888888888877665443 33677788889999886 3344445
Q ss_pred HHHHHHHH-------HHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH
Q 002273 119 HTHCGILY-------KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA 191 (944)
Q Consensus 119 ~~~la~~~-------~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 191 (944)
|...+... ...++++.-...|.+++..-.....--..+...+...-..+...-..++-+.++...+... .+.
T Consensus 186 w~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~-~D~ 264 (881)
T KOG0128|consen 186 WEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP-LDE 264 (881)
T ss_pred HHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc-chh
Confidence 54444443 4456788888899999876443333223334455556666666666677888888777654 221
Q ss_pred H----HHHHHH--H-HHHHcCCHHHHHHHHHHH-------HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002273 192 P----AYYNLG--V-VYSELMQYDTALGCYEKA-------ALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257 (944)
Q Consensus 192 ~----~~~~la--~-~~~~~g~~~~A~~~~~~a-------l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 257 (944)
+ .+.... . ......+++.|.+-+.+. ++..+.....|..+.......|+...-...+++++...+.
T Consensus 265 ~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~ 344 (881)
T KOG0128|consen 265 DTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVL 344 (881)
T ss_pred hhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccc
Confidence 1 111111 1 112344555555554433 3344444455666667777788888888888888888877
Q ss_pred cHHHHHHHHH
Q 002273 258 FEIAKNNMAI 267 (944)
Q Consensus 258 ~~~~~~~la~ 267 (944)
+...|...+.
T Consensus 345 ~~~~wi~y~~ 354 (881)
T KOG0128|consen 345 DRALWIGYGV 354 (881)
T ss_pred cHHHHhhhhh
Confidence 7777666553
No 436
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.62 E-value=1.7 Score=48.79 Aligned_cols=80 Identities=6% Similarity=-0.075 Sum_probs=40.0
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 002273 103 DSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182 (944)
Q Consensus 103 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~ 182 (944)
+.+....+..|+++......+..+...|+.+.|+..++..+. + .-.......++.+|.++.-+.+|..|-..+..
T Consensus 254 ~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~---~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~ 328 (546)
T KOG3783|consen 254 KALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--I---RMKQVKSLMVFERAWLSVGQHQYSRAADSFDL 328 (546)
T ss_pred HHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--H---HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 333333444566655555566666666665555555555544 1 11222233444555555555555555555555
Q ss_pred HHhhC
Q 002273 183 ALKID 187 (944)
Q Consensus 183 al~~~ 187 (944)
..+.+
T Consensus 329 L~des 333 (546)
T KOG3783|consen 329 LRDES 333 (546)
T ss_pred HHhhh
Confidence 44443
No 437
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=95.60 E-value=0.049 Score=58.89 Aligned_cols=142 Identities=12% Similarity=0.022 Sum_probs=105.0
Q ss_pred HcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002273 335 EMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMI 414 (944)
Q Consensus 335 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l 414 (944)
..|+.-.|-.-+..++...|.++......+.+....|.|+.|.+.+..+-..-..-..+...+-+-...+|++++|....
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a 380 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTA 380 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHH
Confidence 34666777777777777777777777777778888888888877776555443333444555556677888889888888
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhhHHHHhhhccCCC
Q 002273 415 EKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGH 476 (944)
Q Consensus 415 ~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~ 476 (944)
+-.+...-+++++..--+..-..+|-+++|..++++.+.++|....-+.|.+-...|..+|+
T Consensus 381 ~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~~~~~~~~~ 442 (831)
T PRK15180 381 EMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSSTQYFNDGN 442 (831)
T ss_pred HHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeeccceeccCcc
Confidence 88877766777777666666777888899999999999999887777777777777777765
No 438
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=95.51 E-value=0.72 Score=50.43 Aligned_cols=154 Identities=16% Similarity=0.132 Sum_probs=97.2
Q ss_pred CCeEEEecCCCCcCCHH-HHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCC------------cEEEc
Q 002273 681 GFITFGSFNNLAKITPK-VLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESL------------RVDLL 747 (944)
Q Consensus 681 ~~~~f~~~~~~~K~~~~-~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~------------rv~~~ 747 (944)
..++++|. ....++ .++++.+++++.||..|+++-.. ++--..+.+.+.++|+... .|.+.
T Consensus 232 ~v~iaaST---H~GEeei~l~~~~~l~~~~~~~llIlVPRH---pERf~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~ 305 (419)
T COG1519 232 PVWVAAST---HEGEEEIILDAHQALKKQFPNLLLILVPRH---PERFKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLG 305 (419)
T ss_pred ceEEEecC---CCchHHHHHHHHHHHHhhCCCceEEEecCC---hhhHHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEE
Confidence 34444443 566666 88999999999999999998432 2444566677777776432 33332
Q ss_pred cCccCcHHHHHhcccccEEec--CCCCCCcccHHHhhhcCCcEEecCCCccc-ccchhHHHhhcCCcccccCCHHHHHHH
Q 002273 748 PLILLNHDHMQAYSLMDISLD--TFPYAGTTTTCESLYMGVPCVTMAGSVHA-HNVGVSLLTKVGLKHLIAKNEDEYVQL 824 (944)
Q Consensus 748 ~~~~~~~~~~~~~~~~Di~Ld--~~~~~~~~t~~eal~~gvPvvt~~g~~~~-~r~~~~~l~~~gl~~~v~~~~~~y~~~ 824 (944)
.. -.+....|.++||+.- ||--.||--.+|++++|+|||+ |.... -+..+-.|...|-. ++++| ++.+..
T Consensus 306 Dt---mGEL~l~y~~adiAFVGGSlv~~GGHN~LEpa~~~~pvi~--Gp~~~Nf~ei~~~l~~~ga~-~~v~~-~~~l~~ 378 (419)
T COG1519 306 DT---MGELGLLYGIADIAFVGGSLVPIGGHNPLEPAAFGTPVIF--GPYTFNFSDIAERLLQAGAG-LQVED-ADLLAK 378 (419)
T ss_pred ec---HhHHHHHHhhccEEEECCcccCCCCCChhhHHHcCCCEEe--CCccccHHHHHHHHHhcCCe-EEECC-HHHHHH
Confidence 22 3578889999999853 3422677779999999999999 33221 11122222222322 34566 555666
Q ss_pred HHHHh-cCHHHHHHHHHHHHHHhh
Q 002273 825 ALQLA-SDVTALANLRMSLRDLMS 847 (944)
Q Consensus 825 a~~l~-~d~~~~~~~r~~~~~~~~ 847 (944)
++.+. .|++.+.++++...+-+.
T Consensus 379 ~v~~l~~~~~~r~~~~~~~~~~v~ 402 (419)
T COG1519 379 AVELLLADEDKREAYGRAGLEFLA 402 (419)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHH
Confidence 65554 458888888777666544
No 439
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.43 E-value=0.25 Score=46.64 Aligned_cols=100 Identities=12% Similarity=-0.045 Sum_probs=85.0
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (944)
-...++.........++.+++..++..+--..|+.++.-..-|..+...|++.+|+..++.+.+..|..+.+--.++.|+
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 45678888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCC
Q 002273 127 KDEGRLVEAAESYHKALSADP 147 (944)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~p 147 (944)
..+|+.+ =..+-+++++..+
T Consensus 89 ~~~~D~~-Wr~~A~evle~~~ 108 (160)
T PF09613_consen 89 YALGDPS-WRRYADEVLESGA 108 (160)
T ss_pred HHcCChH-HHHHHHHHHhcCC
Confidence 9888754 2223344444443
No 440
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.40 E-value=0.03 Score=37.38 Aligned_cols=31 Identities=29% Similarity=0.422 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002273 393 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 423 (944)
Q Consensus 393 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 423 (944)
+++.+|.++.+.|++++|++.|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 4566666666666666666666666666665
No 441
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.18 E-value=0.58 Score=52.73 Aligned_cols=132 Identities=20% Similarity=0.151 Sum_probs=106.4
Q ss_pred CChHHHHHHHHHHHhhCCCCHHHHHH--HHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002273 337 LKFDMAIVFYELAFHFNPHCAEACNN--LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMI 414 (944)
Q Consensus 337 g~~~~A~~~~~~al~~~p~~~~~~~~--la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l 414 (944)
+...-++..+...+.+++.+++.+.. +...+...+....+...+..++..+|++..+..+|+......|....+...+
T Consensus 45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~ 124 (620)
T COG3914 45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADI 124 (620)
T ss_pred CchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHH
Confidence 34444677777777788888877544 4666777888889999999999999999999999999988888776666655
Q ss_pred HH-HHHhCCCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhhHHHH
Q 002273 415 EK-AIAANPTYAEAYNNL------GVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 468 (944)
Q Consensus 415 ~~-al~~~p~~~~a~~~l------a~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~~~~ 468 (944)
.. +....|++.+....+ ++....+|+..++....+++..+.|.++.+...++.+
T Consensus 125 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 125 SEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 55 888889887766555 8889999999999999999999999997776665444
No 442
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=95.17 E-value=0.21 Score=57.62 Aligned_cols=139 Identities=17% Similarity=0.180 Sum_probs=78.3
Q ss_pred CcCCHHHHHHHH-HHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCC
Q 002273 692 AKITPKVLQVWA-RILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTF 770 (944)
Q Consensus 692 ~K~~~~~~~~~~-~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~ 770 (944)
.++-|.++++-. +.++ ++.++++-. ..+..++.+.+..+..++ -.+.+... ... ...++.||++|
T Consensus 428 ~rllPv~l~aa~~~~l~--~~l~fvvp~---a~~~~~~~i~~~~~~~~~--~~~~ii~~---~~~-~~~m~aaD~aL--- 493 (608)
T PRK01021 428 LRNLTIQVQAFLASSLA--STHQLLVSS---ANPKYDHLILEVLQQEGC--LHSHIVPS---QFR-YELMRECDCAL--- 493 (608)
T ss_pred HHHHHHHHHHHHHHHhc--cCeEEEEec---CchhhHHHHHHHHhhcCC--CCeEEecC---cch-HHHHHhcCeee---
Confidence 344466666654 1222 244554422 222334555555544332 11223221 112 35667899999
Q ss_pred CCCCcccHHHhhhcCCcEEe-cCCCcccccchhHHHh----hcCC----------cccc----cCCHHHHHHHHHHHhcC
Q 002273 771 PYAGTTTTCESLYMGVPCVT-MAGSVHAHNVGVSLLT----KVGL----------KHLI----AKNEDEYVQLALQLASD 831 (944)
Q Consensus 771 ~~~~~~t~~eal~~gvPvvt-~~g~~~~~r~~~~~l~----~~gl----------~~~v----~~~~~~y~~~a~~l~~d 831 (944)
-..||.|+|++.+|+|.|. ..-..+--.++--+++ .+|| ||++ .-+++.-.+. +++..|
T Consensus 494 -aaSGTaTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~tpe~La~~-l~lL~d 571 (608)
T PRK01021 494 -AKCGTIVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQPEEVAAA-LDILKT 571 (608)
T ss_pred -ecCCHHHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCCHHHHHHH-HHHhcC
Confidence 6779999999999999554 4433222222222222 2333 5777 3356666654 699999
Q ss_pred HHHHHHHHHHHHHHh
Q 002273 832 VTALANLRMSLRDLM 846 (944)
Q Consensus 832 ~~~~~~~r~~~~~~~ 846 (944)
++.++++++.+++..
T Consensus 572 ~~~r~~~~~~l~~lr 586 (608)
T PRK01021 572 SQSKEKQKDACRDLY 586 (608)
T ss_pred HHHHHHHHHHHHHHH
Confidence 988888888887654
No 443
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=94.99 E-value=2.8 Score=47.67 Aligned_cols=48 Identities=8% Similarity=-0.104 Sum_probs=24.2
Q ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q 002273 56 NILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEA 108 (944)
Q Consensus 56 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 108 (944)
..+...|.+++|...----+. ..-|-.+|...+..=+++-|.+.|.++
T Consensus 564 ~q~Ieag~f~ea~~iaclgVv-----~~DW~~LA~~ALeAL~f~~ARkAY~rV 611 (1081)
T KOG1538|consen 564 YQYIERGLFKEAYQIACLGVT-----DTDWRELAMEALEALDFETARKAYIRV 611 (1081)
T ss_pred hhhhhccchhhhhccccccee-----cchHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 345666776666543211111 122445555555555666666666554
No 444
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.99 E-value=0.048 Score=37.45 Aligned_cols=23 Identities=43% Similarity=0.824 Sum_probs=10.4
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHH
Q 002273 360 CNNLGVIYKDRDNLDKAVECYQM 382 (944)
Q Consensus 360 ~~~la~~~~~~g~~~~A~~~~~~ 382 (944)
+.++|.+|...|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 33444444444444444444444
No 445
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.98 E-value=1.7 Score=43.99 Aligned_cols=93 Identities=17% Similarity=0.141 Sum_probs=46.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCC------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCC--HHH
Q 002273 328 NLGVAYGEMLKFDMAIVFYELAFHFNP------------HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF--SQS 393 (944)
Q Consensus 328 ~la~~~~~~g~~~~A~~~~~~al~~~p------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~ 393 (944)
.+|.+|+..++|.+-.+.+++.-.... .-.++|..-...|-.+++-.+-...|++++.+...- +.+
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI 229 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI 229 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH
Confidence 456666666655555555444433211 012344444455556666666666666666554322 111
Q ss_pred H----HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002273 394 L----NNLGVVYTVQGKMDAAAEMIEKAIAA 420 (944)
Q Consensus 394 ~----~~la~~~~~~g~~~~A~~~l~~al~~ 420 (944)
. -.=|..+.+.|++++|-.-|=+|.+.
T Consensus 230 mGvIRECGGKMHlreg~fe~AhTDFFEAFKN 260 (440)
T KOG1464|consen 230 MGVIRECGGKMHLREGEFEKAHTDFFEAFKN 260 (440)
T ss_pred HhHHHHcCCccccccchHHHHHhHHHHHHhc
Confidence 1 11234455566666666665555554
No 446
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.97 E-value=0.21 Score=42.70 Aligned_cols=48 Identities=29% Similarity=0.303 Sum_probs=30.0
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002273 411 AEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 458 (944)
Q Consensus 411 ~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~ 458 (944)
+..+++.++.+|++..+.+.+|..+...|++++|++.+-.+++.++++
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 445566666666666666667776666777777777666666666655
No 447
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=94.94 E-value=0.22 Score=58.30 Aligned_cols=147 Identities=17% Similarity=0.135 Sum_probs=86.6
Q ss_pred CeEEEecCCCC---cCCHHHHHHHHHHHhHcCCce-EEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHH
Q 002273 682 FITFGSFNNLA---KITPKVLQVWARILCAVPNSR-LVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 757 (944)
Q Consensus 682 ~~~f~~~~~~~---K~~~~~~~~~~~il~~~p~~~-l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~ 757 (944)
.++|-||+... .+..+.....+..+...|+-. +|..... .... +.+.+... .+..|++.++.| +.+.+
T Consensus 278 ~vvyvSfGS~~~~~~lp~~~~~~l~~~l~~~~~~~FiW~~~~~-~~~~----~~~~~~~~--~~~nV~~~~W~P-Q~~ll 349 (496)
T KOG1192|consen 278 SVVYISFGSMVNSADLPEEQKKELAKALESLQGVTFLWKYRPD-DSIY----FPEGLPNR--GRGNVVLSKWAP-QNDLL 349 (496)
T ss_pred CeEEEECCcccccccCCHHHHHHHHHHHHhCCCceEEEEecCC-cchh----hhhcCCCC--CcCceEEecCCC-cHHHh
Confidence 46688888776 899999999999999987776 4554332 1111 11111111 234688889988 56666
Q ss_pred HhcccccEEecCCCCCCcccHHHhhhcCCcEEecC--CCcccccchhHHHhhcCCcc-cccC--CHHHHHHHHHHHhcCH
Q 002273 758 QAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVHAHNVGVSLLTKVGLKH-LIAK--NEDEYVQLALQLASDV 832 (944)
Q Consensus 758 ~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~--g~~~~~r~~~~~l~~~gl~~-~v~~--~~~~y~~~a~~l~~d~ 832 (944)
.....+..|+ ..+|=++|+|+++.|||+|++| |+.+.. +-++..-|... ++.. +..+.......+..++
T Consensus 350 l~H~~v~~Fv---THgG~nSt~E~~~~GvP~v~~Plf~DQ~~N---a~~i~~~g~~~v~~~~~~~~~~~~~~~~~il~~~ 423 (496)
T KOG1192|consen 350 LDHPAVGGFV---THGGWNSTLESIYSGVPMVCVPLFGDQPLN---ARLLVRHGGGGVLDKRDLVSEELLEAIKEILENE 423 (496)
T ss_pred cCCCcCcEEE---ECCcccHHHHHHhcCCceecCCccccchhH---HHHHHhCCCEEEEehhhcCcHHHHHHHHHHHcCh
Confidence 3333344444 3467778899999999999876 775542 22333333322 2222 2222445555566666
Q ss_pred HHHHHHHHHH
Q 002273 833 TALANLRMSL 842 (944)
Q Consensus 833 ~~~~~~r~~~ 842 (944)
+..+..++-.
T Consensus 424 ~y~~~~~~l~ 433 (496)
T KOG1192|consen 424 EYKEAAKRLS 433 (496)
T ss_pred HHHHHHHHHH
Confidence 5555544433
No 448
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.94 E-value=0.41 Score=45.17 Aligned_cols=97 Identities=15% Similarity=0.109 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 002273 359 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 438 (944)
Q Consensus 359 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~ 438 (944)
.+..+..+-...++.+++...+.-.--+.|+.++.-..-|+++...|++.+|+..|+.+.+..|..+.+.-.++.|+..+
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~ 91 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYAL 91 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHc
Confidence 33444445555666677777776666677777777777777777777777777777777666676676666777777777
Q ss_pred CCHHHHHHHHHHHHhhCC
Q 002273 439 GSISLAIDAYEQCLKIDP 456 (944)
Q Consensus 439 g~~~eA~~~~~~al~l~P 456 (944)
|+.+ =..+-.++++..+
T Consensus 92 ~D~~-Wr~~A~evle~~~ 108 (160)
T PF09613_consen 92 GDPS-WRRYADEVLESGA 108 (160)
T ss_pred CChH-HHHHHHHHHhcCC
Confidence 6643 2333344555444
No 449
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.93 E-value=0.058 Score=40.57 Aligned_cols=37 Identities=24% Similarity=0.276 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhh
Q 002273 427 AYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 463 (944)
Q Consensus 427 a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~ 463 (944)
.++.+|..+.++|+|++|..+.+.+|+++|++.++..
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~ 39 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 4566666677777777777777777777777665543
No 450
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.91 E-value=0.22 Score=42.51 Aligned_cols=75 Identities=15% Similarity=0.228 Sum_probs=56.6
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002273 376 AVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY--AEAYNNLGVLYRDAGSISLAIDAYEQ 450 (944)
Q Consensus 376 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~--~~a~~~la~~~~~~g~~~eA~~~~~~ 450 (944)
.+..+++.++.+|++..+.+.+|..+...|++++|++.+-.+++.+++. ..+...+-.++..+|.-+.-...|++
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RR 83 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRR 83 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHH
Confidence 4677899999999999999999999999999999999999999998765 55666666677777665444444443
No 451
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=94.91 E-value=1.3 Score=50.07 Aligned_cols=212 Identities=11% Similarity=0.089 Sum_probs=102.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-
Q 002273 194 YYNLGVVYSELMQYDTALGCYEKAAL--------------ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF- 258 (944)
Q Consensus 194 ~~~la~~~~~~g~~~~A~~~~~~al~--------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~- 258 (944)
|..||.-....=+++-|.+.|.+.-. .....+. -..++.++...|++.+|.+.|++.-..+..-
T Consensus 588 W~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~-~iLlA~~~Ay~gKF~EAAklFk~~G~enRAlE 666 (1081)
T KOG1538|consen 588 WRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPN-DLLLADVFAYQGKFHEAAKLFKRSGHENRALE 666 (1081)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCch-HHHHHHHHHhhhhHHHHHHHHHHcCchhhHHH
Confidence 45556655566666677666665422 1111122 2356777788888888888887642211100
Q ss_pred ---HHHHHHHHHHHHHhhhhhhhhHHHHHhh---cCCCCCchhHHHhhhcCCHHHHHHHHH----------HHHHhCCCC
Q 002273 259 ---EIAKNNMAIALTDLGTKTYGRALLLFRL---NGSNFQSPFFELVKLEGDINQGVAYYK----------KALYYNWHY 322 (944)
Q Consensus 259 ---~~~~~~la~~l~~~~~~~~~~a~~~~~~---~~~~~~~~~~~l~~~~~~~~~A~~~~~----------~al~~~p~~ 322 (944)
..-.+.++.-+...|..+..+.+...+. .+.......++++...|+..+|+.+.- -+-+++...
T Consensus 667 myTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~e 746 (1081)
T KOG1538|consen 667 MYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAE 746 (1081)
T ss_pred HHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhh
Confidence 0012223333333343333333322211 122223345566677777777765431 111222233
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 002273 323 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYT 402 (944)
Q Consensus 323 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 402 (944)
.+.+..++..+.....+.-|.+.|++.-. ...+..++...+++.+|...-++--+.- +++++-.|+.+.
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD--------~ksiVqlHve~~~W~eAFalAe~hPe~~---~dVy~pyaqwLA 815 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGD--------LKSLVQLHVETQRWDEAFALAEKHPEFK---DDVYMPYAQWLA 815 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhcc--------HHHHhhheeecccchHhHhhhhhCcccc---ccccchHHHHhh
Confidence 34444455555555555555555544321 1123344455666666655544322221 335666666666
Q ss_pred HcCCHHHHHHHHHHH
Q 002273 403 VQGKMDAAAEMIEKA 417 (944)
Q Consensus 403 ~~g~~~~A~~~l~~a 417 (944)
+..++++|.+.|.+|
T Consensus 816 E~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 816 ENDRFEEAQKAFHKA 830 (1081)
T ss_pred hhhhHHHHHHHHHHh
Confidence 666666666555443
No 452
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.80 E-value=3.8 Score=38.91 Aligned_cols=147 Identities=18% Similarity=0.118 Sum_probs=89.8
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC--C--HHHHHH
Q 002273 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGN--VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ--N--ACAHTH 121 (944)
Q Consensus 48 ~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~--~~~~~~ 121 (944)
....|..|..+.+.++.++|+.-|..+-+..-.+ .-+.+..+.+..+.|+...|+..|.++-...|- - -.+...
T Consensus 58 sgd~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 58 SGDAFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred chHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 3455677777888888899998888876654433 456677788888888888888888887654331 1 124455
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 002273 122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVY 201 (944)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 201 (944)
-+.++...|-|++-....+..-. +.++ ....+-..||...++.|++.+|.+.|.+... +...+....+.+.+.
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~--d~n~----mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRAq~m 210 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAG--DGNP----MRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIM 210 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccC--CCCh----hHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHHHHH
Confidence 56667777877766555443211 1111 1122334456666667777777777766554 333444444444443
No 453
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=94.79 E-value=0.72 Score=55.71 Aligned_cols=108 Identities=14% Similarity=0.107 Sum_probs=70.9
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHc----CCceEEEecCCCCCHHHHHHHHHHH----HHcCCCCCcEEEccCc
Q 002273 681 GFITFGSFNNL--AKITPKVLQVWARILCAV----PNSRLVVKCKPFCCDSVRHRFLSTL----EQLGLESLRVDLLPLI 750 (944)
Q Consensus 681 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~----p~~~l~~~~~~~~~~~~~~~~~~~~----~~~gi~~~rv~~~~~~ 750 (944)
+.+|+|-.-|. +|...-++....++.+-+ ...++++.|++...+..-..+.+.+ +.-.+ ++||+|++.
T Consensus 477 d~ltigfarRfa~YKR~~Lil~dl~rl~~il~~~~~pvQ~IfaGKAhP~d~~gK~iIk~i~~~a~~p~~-~~kVvfle~- 554 (778)
T cd04299 477 NVLTIGFARRFATYKRATLLLRDPERLKRLLNDPERPVQFIFAGKAHPADEPGKELIQEIVEFSRRPEF-RGRIVFLED- 554 (778)
T ss_pred CccEEeeeecchhhhhHHHHHHHHHHHHHHhhCCCCCeEEEEEEecCccchHHHHHHHHHHHHHhCcCC-CCcEEEEcC-
Confidence 44566665555 888877777765554311 2367888776654333333333333 32244 569999865
Q ss_pred cCcHHHHH--hcccccEEecCCC--C-CCcccHHHhhhcCCcEEecC
Q 002273 751 LLNHDHMQ--AYSLMDISLDTFP--Y-AGTTTTCESLYMGVPCVTMA 792 (944)
Q Consensus 751 ~~~~~~~~--~~~~~Di~Ld~~~--~-~~~~t~~eal~~gvPvvt~~ 792 (944)
...-++ .+.-|||.|.|+- + ..||+-+=|+.-|++.++.-
T Consensus 555 --Yd~~lA~~LvaG~DvwLn~prrp~EAsGTSgMKA~~NG~LnlSvl 599 (778)
T cd04299 555 --YDMALARHLVQGVDVWLNTPRRPLEASGTSGMKAALNGGLNLSVL 599 (778)
T ss_pred --CCHHHHHHHHhhhhhcccCCCCCCCCCccchHHHHHcCCeeeecc
Confidence 334444 4588999999994 7 88999999999999988643
No 454
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=94.69 E-value=0.32 Score=49.25 Aligned_cols=92 Identities=25% Similarity=0.232 Sum_probs=50.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChH-------HHHHHHHHHHhhCCC------CHHHHH
Q 002273 129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ-------DGIQKYYEALKIDPH------YAPAYY 195 (944)
Q Consensus 129 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~-------~A~~~~~~al~~~p~------~~~~~~ 195 (944)
...+++|++.|.-|+-...-........|.++..++.+|...++.+ .|++.|+++++.... ...+.+
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 3456666666665554321111111245666777777777777744 344444444433211 234566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh
Q 002273 196 NLGVVYSELMQYDTALGCYEKAALE 220 (944)
Q Consensus 196 ~la~~~~~~g~~~~A~~~~~~al~~ 220 (944)
.+|.++.+.|++++|...|.+++..
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 6666677777777777777666654
No 455
>PRK10941 hypothetical protein; Provisional
Probab=94.68 E-value=0.34 Score=50.76 Aligned_cols=70 Identities=11% Similarity=0.162 Sum_probs=41.6
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 002273 360 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 429 (944)
Q Consensus 360 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~ 429 (944)
+.++-.+|.+.++++.|+.+.+..+.+.|+++.-+...|.+|.++|.+..|..-++..++..|+++.+..
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 3445555556666666666666666666666666666666666666666666666666666665554443
No 456
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=94.61 E-value=1.1 Score=39.40 Aligned_cols=86 Identities=12% Similarity=0.137 Sum_probs=49.3
Q ss_pred HCCCHHHHHHHHHHHHhhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCCH----
Q 002273 369 DRDNLDKAVECYQMALSIKPN------------FSQSLNNLGVVYTVQGKMDAAAEMIEKAIA-------ANPTYA---- 425 (944)
Q Consensus 369 ~~g~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~l~~al~-------~~p~~~---- 425 (944)
..|-|++|...+.++.+.... +.-++..|+..+..+|+|++++...++++. ++.+..
T Consensus 21 ~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWI 100 (144)
T PF12968_consen 21 QDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWI 100 (144)
T ss_dssp HHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHH
Confidence 345566666666666554221 122455566666666666666555555543 344433
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002273 426 EAYNNLGVLYRDAGSISLAIDAYEQCLKI 454 (944)
Q Consensus 426 ~a~~~la~~~~~~g~~~eA~~~~~~al~l 454 (944)
.+-++.+..+..+|+.++|+..|+.+-+.
T Consensus 101 aaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 101 AAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 34466778888888888888888877553
No 457
>PRK10941 hypothetical protein; Provisional
Probab=94.55 E-value=0.43 Score=49.95 Aligned_cols=71 Identities=18% Similarity=0.084 Sum_probs=48.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 002273 194 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNN 264 (944)
Q Consensus 194 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 264 (944)
..++-.+|.+.++++.|+.+.+.++...|+++.-+...|.+|.++|.+..|..-++..++..|+++.+...
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i 254 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI 254 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence 34555666677777777777777777777777666677777777777777777777777777766655433
No 458
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.54 E-value=0.057 Score=53.04 Aligned_cols=67 Identities=28% Similarity=0.510 Sum_probs=58.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhhH
Q 002273 399 VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 465 (944)
Q Consensus 399 ~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~ 465 (944)
....+.++.+.|.+.|.+++++.|+....|+.+|....+.|+++.|.+.|++.++++|++.......
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~gaa~k 69 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHGGAALK 69 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccccchhhh
Confidence 3456778999999999999999999999999999999999999999999999999999987654443
No 459
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.51 E-value=0.38 Score=50.41 Aligned_cols=124 Identities=17% Similarity=0.261 Sum_probs=93.4
Q ss_pred cCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEE-ccCccCcHHHHHhcccccEE--ecCCCCCC--cccHHHhhh
Q 002273 709 VPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDL-LPLILLNHDHMQAYSLMDIS--LDTFPYAG--TTTTCESLY 783 (944)
Q Consensus 709 ~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~-~~~~~~~~~~~~~~~~~Di~--Ld~~~~~~--~~t~~eal~ 783 (944)
.|+-..++-|+| +.++...+...+.-. .+|.| .++.. -+||-..+..||+. |.|+.-|= ..-.+|-.-
T Consensus 291 lP~llciITGKG----PlkE~Y~~~I~~~~~--~~v~~~tpWL~-aEDYP~ll~saDlGVcLHtSSSGLDLPMKVVDMFG 363 (444)
T KOG2941|consen 291 LPSLLCIITGKG----PLKEKYSQEIHEKNL--QHVQVCTPWLE-AEDYPKLLASADLGVCLHTSSSGLDLPMKVVDMFG 363 (444)
T ss_pred CCcEEEEEcCCC----chhHHHHHHHHHhcc--cceeeeecccc-cccchhHhhccccceEeeecCcccCcchhHHHhhc
Confidence 477777777776 788888888888877 45554 35544 68999999999975 55543322 346899999
Q ss_pred cCCcEEecCCCcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhc----CHHHHHHHHHHHHHH
Q 002273 784 MGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLAS----DVTALANLRMSLRDL 845 (944)
Q Consensus 784 ~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~l~~----d~~~~~~~r~~~~~~ 845 (944)
||+||+++.=.+.-. |-.-|-..+|..|-++..+...-|-+ +...+.+++..+++.
T Consensus 364 cglPvcA~~fkcl~E------LVkh~eNGlvF~Ds~eLa~ql~~lf~~fp~~a~~l~~lkkn~~e~ 423 (444)
T KOG2941|consen 364 CGLPVCAVNFKCLDE------LVKHGENGLVFEDSEELAEQLQMLFKNFPDNADELNQLKKNLREE 423 (444)
T ss_pred CCCceeeecchhHHH------HHhcCCCceEeccHHHHHHHHHHHHhcCCCCHHHHHHHHHhhHHH
Confidence 999999965433322 33347788999999999999999998 899999999998876
No 460
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=94.37 E-value=0.24 Score=37.25 Aligned_cols=38 Identities=16% Similarity=0.168 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 002273 393 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 430 (944)
Q Consensus 393 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~ 430 (944)
.++.+|..+.++|+|++|..+.+.+++..|++..+...
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L 40 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 45566666666666666666666666666666555443
No 461
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=94.35 E-value=0.063 Score=34.98 Aligned_cols=32 Identities=41% Similarity=0.690 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002273 426 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 457 (944)
Q Consensus 426 ~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~ 457 (944)
.+++.+|.++...|++++|+..|+++++++|+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 35666777777777777777777777776664
No 462
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=94.33 E-value=0.74 Score=56.84 Aligned_cols=168 Identities=16% Similarity=0.107 Sum_probs=113.0
Q ss_pred CChHHHHHHHHHHHhCCCHHHHHH------HHHHH-HHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-------
Q 002273 46 FEGKDALSYANILRSRNKFVDALA------LYEIV-LEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL------- 111 (944)
Q Consensus 46 ~~~~~~~~~A~~~~~~g~~~~A~~------~~~~a-l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------- 111 (944)
.+.+..++.+......|.+.+|.+ ++... -...|.....+..++..+...+++++|+..-.++.-+
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ 1009 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGK 1009 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccC
Confidence 466778888888999999998888 55533 3457888999999999999999999999998887644
Q ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 002273 112 -DPQNACAHTHCGILYKDEGRLVEAAESYHKALSA-----DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK 185 (944)
Q Consensus 112 -~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~ 185 (944)
.|+....+..++...+..++...|...+.++..+ .|+.+.. +.+..+++.++...++++.|+++.+.|+.
T Consensus 1010 ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~----a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1010 DSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPT----ALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred CCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCch----hhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 2455667888888888888888888888877664 2222222 33345555555556667777777766665
Q ss_pred hCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002273 186 IDPH--------YAPAYYNLGVVYSELMQYDTALGCYEKA 217 (944)
Q Consensus 186 ~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~a 217 (944)
.... ....+..+++.+...+++..|+...+..
T Consensus 1086 ~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t 1125 (1236)
T KOG1839|consen 1086 KNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVT 1125 (1236)
T ss_pred HHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhH
Confidence 4211 2333444444444445444444444433
No 463
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.31 E-value=3.4 Score=39.26 Aligned_cols=132 Identities=15% Similarity=0.112 Sum_probs=94.0
Q ss_pred HHHcCChHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC--C--HHHHHHHHHHHHHcCC
Q 002273 333 YGEMLKFDMAIVFYELAFHFNPHC--AEACNNLGVIYKDRDNLDKAVECYQMALSIKPN--F--SQSLNNLGVVYTVQGK 406 (944)
Q Consensus 333 ~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~--~~~~~~la~~~~~~g~ 406 (944)
+...++.++|+..|...-+-.-.. .-+.+..+.+..+.|+...|+..|.++-...+- - -.+...-+.++...|-
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 445678888888888877664433 346677788889999999999999988765432 1 1245556777888899
Q ss_pred HHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhhH
Q 002273 407 MDAAAEMIEKAI-AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 465 (944)
Q Consensus 407 ~~~A~~~l~~al-~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~ 465 (944)
|++-....+..- +.+|-...+...||..-.+.|++.+|.+.|.+... +...+....++
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqR 206 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQR 206 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHH
Confidence 888766655432 22444567788899999999999999999999887 44444443343
No 464
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=94.27 E-value=8.6 Score=40.67 Aligned_cols=205 Identities=14% Similarity=0.049 Sum_probs=125.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCC--------HHHHHHHHHHHHHhCCHHHHHHHHHHHHh---cCC--C
Q 002273 50 DALSYANILRSRNKFVDALALYEIVLEK--DSGN--------VEAHIGKGICLQMQNMGRLAFDSFSEAVK---LDP--Q 114 (944)
Q Consensus 50 ~~~~~A~~~~~~g~~~~A~~~~~~al~~--~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p--~ 114 (944)
..+..+......+++++++..|.+++.. .|.+ ......++..+.+.|+.++-.+.....-. .-+ .
T Consensus 6 ~~~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kak 85 (411)
T KOG1463|consen 6 SLLERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAK 85 (411)
T ss_pred HHHHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHH
Confidence 3477888888899999999999999884 2221 34667899999999998876555443322 111 1
Q ss_pred CHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhh----C--
Q 002273 115 NACAHTHCGILY-KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI----D-- 187 (944)
Q Consensus 115 ~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~-- 187 (944)
.......+-... ...+..+.-+..+...++-....... ...-.+-..+...|...++|.+|+......+.. +
T Consensus 86 aaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRt-FLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK 164 (411)
T KOG1463|consen 86 AAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRT-FLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDK 164 (411)
T ss_pred HHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccc
Confidence 111111122111 12233344444444444432222111 111223445677888899999999988776654 2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 002273 188 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALER-----PM--YAEAYCNMGVIYKNRGDLESAIACYERCLAVS 255 (944)
Q Consensus 188 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 255 (944)
+.-.+++..-...|+...+..+|...+..+-... |. ....-..-|.++....+|..|..+|-.+++-.
T Consensus 165 ~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf 239 (411)
T KOG1463|consen 165 ILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGF 239 (411)
T ss_pred cceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccc
Confidence 2235667777888999999999988887775432 11 11222334666777789999999998888754
No 465
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=94.13 E-value=0.71 Score=40.47 Aligned_cols=28 Identities=21% Similarity=0.163 Sum_probs=16.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 002273 232 GVIYKNRGDLESAIACYERCLAVSPNFE 259 (944)
Q Consensus 232 a~~~~~~g~~~~A~~~~~~al~~~p~~~ 259 (944)
+.-++..|++-+|++..+..+...+++.
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~ 30 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDE 30 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCC
Confidence 3445556666666666666665555544
No 466
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=94.07 E-value=12 Score=41.41 Aligned_cols=137 Identities=11% Similarity=0.004 Sum_probs=104.4
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (944)
..+..-.........|+.-.|-+....++...|.++......+.+....|+|+.|...+..+-..-.....+...+-...
T Consensus 288 ~~~~~~~si~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~ 367 (831)
T PRK15180 288 QIREITLSITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSL 367 (831)
T ss_pred chhHHHHHHHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhh
Confidence 33444444556678899999999999999999999999999999999999999999888766554444445566666778
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 002273 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY 190 (944)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 190 (944)
..+|++++|.....-.+...-++++. ..--+......|-++++...+++.+.++|..
T Consensus 368 ~~l~r~~~a~s~a~~~l~~eie~~ei-------~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 368 HGLARWREALSTAEMMLSNEIEDEEV-------LTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred hchhhHHHHHHHHHHHhccccCChhh-------eeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 88999999999888887765555543 2222333445678899999999999887653
No 467
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.99 E-value=3.9 Score=41.55 Aligned_cols=261 Identities=17% Similarity=0.139 Sum_probs=128.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-----CCCCHH-HHHHHHHHHH
Q 002273 129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI-----DPHYAP-AYYNLGVVYS 202 (944)
Q Consensus 129 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~~-~~~~la~~~~ 202 (944)
..+.++|+..|++++++.+...+-- -.++..+..+.+.++++++-+..|.+.+.. ..+..+ ....+-..-.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWG---FKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiS 116 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWG---FKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIS 116 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhH---HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHh
Confidence 3477888888888888877654421 123556667777788888888888776643 111111 1111111111
Q ss_pred HcCCHHHHHHHHHHHHHh--CCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhh
Q 002273 203 ELMQYDTALGCYEKAALE--RPMYA----EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKT 276 (944)
Q Consensus 203 ~~g~~~~A~~~~~~al~~--~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~ 276 (944)
...+.+--...|+..++. +..+. ..-..+|.+|+..++|.+-.+.+++.-....... |..
T Consensus 117 tS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ed-------------Ged- 182 (440)
T KOG1464|consen 117 TSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTED-------------GED- 182 (440)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcccc-------------Cch-
Confidence 222222223333332221 11111 2234567777777777666555555433221100 000
Q ss_pred hhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 002273 277 YGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC 356 (944)
Q Consensus 277 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 356 (944)
+.. ....-.++|..-...|-.+++-.+-..+|++++.+...-
T Consensus 183 ---------------------------D~k-----------KGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAI 224 (440)
T KOG1464|consen 183 ---------------------------DQK-----------KGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAI 224 (440)
T ss_pred ---------------------------hhh-----------ccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccC
Confidence 000 000112333444456666666666677777777664332
Q ss_pred --HHHH----HHHHHHHHHCCCHHHHHHHHHHHHhhCCC-----CHH--HHHHHHHHHHHcCC----HHHHHHHHHHHHH
Q 002273 357 --AEAC----NNLGVIYKDRDNLDKAVECYQMALSIKPN-----FSQ--SLNNLGVVYTVQGK----MDAAAEMIEKAIA 419 (944)
Q Consensus 357 --~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~~~--~~~~la~~~~~~g~----~~~A~~~l~~al~ 419 (944)
+.+. -.=|..+.+.|++++|-..|-+|++.... ... -+.-+|..+.+.|= -.+|..
T Consensus 225 PHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAKP------- 297 (440)
T KOG1464|consen 225 PHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKP------- 297 (440)
T ss_pred CchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccCC-------
Confidence 2221 12245567778888888888888765322 222 23445555555441 111111
Q ss_pred hCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002273 420 ANPTYAE--AYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 457 (944)
Q Consensus 420 ~~p~~~~--a~~~la~~~~~~g~~~eA~~~~~~al~l~P~ 457 (944)
..++++ +..++..+|... + +..|++.++.+.+
T Consensus 298 -yKNdPEIlAMTnlv~aYQ~N-d----I~eFE~Il~~~~~ 331 (440)
T KOG1464|consen 298 -YKNDPEILAMTNLVAAYQNN-D----IIEFERILKSNRS 331 (440)
T ss_pred -CCCCHHHHHHHHHHHHHhcc-c----HHHHHHHHHhhhc
Confidence 123344 455666666543 2 4556666665443
No 468
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=93.87 E-value=0.34 Score=49.02 Aligned_cols=67 Identities=21% Similarity=0.180 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHcCCHHH-------HHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002273 392 QSLNNLGVVYTVQGKMDA-------AAEMIEKAIAANP------TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 458 (944)
Q Consensus 392 ~~~~~la~~~~~~g~~~~-------A~~~l~~al~~~p------~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~ 458 (944)
..+..+|++|...|+.+. |++.|+++++... +...+.+.+|.+..+.|++++|..+|.+++...-.+
T Consensus 119 ~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 119 GLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 345556666666665433 4444455544321 125678889999999999999999999988754443
No 469
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=93.72 E-value=1.4 Score=38.81 Aligned_cols=95 Identities=20% Similarity=0.141 Sum_probs=71.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhC---CC---------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHh-------c
Q 002273 51 ALSYANILRSRNKFVDALALYEIVLEKD---SG---------NVEAHIGKGICLQMQNMGRLAFDSFSEAVK-------L 111 (944)
Q Consensus 51 ~~~~A~~~~~~g~~~~A~~~~~~al~~~---p~---------~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~ 111 (944)
.+..|...+..|-|++|...++++.+.. |. ++.++..++..+..+|+|++++...++++. +
T Consensus 12 aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL 91 (144)
T PF12968_consen 12 ALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGEL 91 (144)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--T
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccc
Confidence 3556777888999999999999998853 21 356778899999999999998888887775 3
Q ss_pred CCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 002273 112 DPQNA----CAHTHCGILYKDEGRLVEAAESYHKALSA 145 (944)
Q Consensus 112 ~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~ 145 (944)
+.+.. .+-+..+..+...|+.++|+..|+.+-+.
T Consensus 92 ~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 92 HQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 44433 34567788899999999999999988653
No 470
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=93.69 E-value=0.45 Score=51.33 Aligned_cols=139 Identities=18% Similarity=0.240 Sum_probs=80.0
Q ss_pred CcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCC
Q 002273 692 AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFP 771 (944)
Q Consensus 692 ~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~ 771 (944)
-++-|-+.++..++..+.|+-++++-..+ ..-++++..........-.+++.. ..-...+..||++|
T Consensus 203 ~rl~~~f~~a~~~l~~~~~~~~~vlp~~~----~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~a~~~aD~al---- 269 (381)
T COG0763 203 RRLLPPFVQAAQELKARYPDLKFVLPLVN----AKYRRIIEEALKWEVAGLSLILID-----GEKRKAFAAADAAL---- 269 (381)
T ss_pred HHHHHHHHHHHHHHHhhCCCceEEEecCc----HHHHHHHHHHhhccccCceEEecC-----chHHHHHHHhhHHH----
Confidence 45667888998898889999999996543 232334433333222111233322 23345667799998
Q ss_pred CCCcccHHHhhhcCCc-EEecCCCcccccchhHH--HhhcCCcccccC------------CHHHHHHHHHHHhcCHHHHH
Q 002273 772 YAGTTTTCESLYMGVP-CVTMAGSVHAHNVGVSL--LTKVGLKHLIAK------------NEDEYVQLALQLASDVTALA 836 (944)
Q Consensus 772 ~~~~~t~~eal~~gvP-vvt~~g~~~~~r~~~~~--l~~~gl~~~v~~------------~~~~y~~~a~~l~~d~~~~~ 836 (944)
-..||.|+|++.+|+| ||+..=..+-..++--+ +..++||.+|+. +++...+....|..|...++
T Consensus 270 ~aSGT~tLE~aL~g~P~Vv~Yk~~~it~~iak~lvk~~yisLpNIi~~~~ivPEliq~~~~pe~la~~l~~ll~~~~~~~ 349 (381)
T COG0763 270 AASGTATLEAALAGTPMVVAYKVKPITYFIAKRLVKLPYVSLPNILAGREIVPELIQEDCTPENLARALEELLLNGDRRE 349 (381)
T ss_pred HhccHHHHHHHHhCCCEEEEEeccHHHHHHHHHhccCCcccchHHhcCCccchHHHhhhcCHHHHHHHHHHHhcChHhHH
Confidence 5679999999999999 55543332222111111 113456655544 34555555666666664545
Q ss_pred HHHHHHH
Q 002273 837 NLRMSLR 843 (944)
Q Consensus 837 ~~r~~~~ 843 (944)
++.+..+
T Consensus 350 ~~~~~~~ 356 (381)
T COG0763 350 ALKEKFR 356 (381)
T ss_pred HHHHHHH
Confidence 5444443
No 471
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=93.53 E-value=0.1 Score=55.40 Aligned_cols=86 Identities=22% Similarity=0.205 Sum_probs=56.0
Q ss_pred CCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHc-CCCCCcEEEccCccCcHHHHHhcccccEEecCCCC
Q 002273 694 ITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQL-GLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY 772 (944)
Q Consensus 694 ~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~-gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~ 772 (944)
....+.++...+++..|+..|+++..|........ ..+... +. ..++.+..... ...++..||.++ -
T Consensus 138 ~~~~~~~~l~~~~~~~p~~~lvvK~HP~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~----~~~Ll~~s~~Vv----t 205 (269)
T PF05159_consen 138 SQADFLDMLESFAKENPDAKLVVKPHPDERGGNKY---SYLEELPNL-PNVVIIDDDVN----LYELLEQSDAVV----T 205 (269)
T ss_pred cHhHHHHHHHHHHHHCCCCEEEEEECchhhCCCCh---hHhhhhhcC-CCeEEECCCCC----HHHHHHhCCEEE----E
Confidence 44567788888899999999999977631111111 222222 22 34444444332 334456688887 5
Q ss_pred CCcccHHHhhhcCCcEEec
Q 002273 773 AGTTTTCESLYMGVPCVTM 791 (944)
Q Consensus 773 ~~~~t~~eal~~gvPvvt~ 791 (944)
-.+|+.+|||.+|+||||+
T Consensus 206 inStvGlEAll~gkpVi~~ 224 (269)
T PF05159_consen 206 INSTVGLEALLHGKPVIVF 224 (269)
T ss_pred ECCHHHHHHHHcCCceEEe
Confidence 6789999999999999994
No 472
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=93.52 E-value=12 Score=39.70 Aligned_cols=166 Identities=17% Similarity=0.106 Sum_probs=95.6
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhc--CCCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhH
Q 002273 86 IGKGICLQMQNMGRLAFDSFSEAVKL--DPQN--------ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAEC 155 (944)
Q Consensus 86 ~~la~~~~~~g~~~~A~~~~~~al~~--~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 155 (944)
...+......++.++++..+...+.. .|.+ ......++..|.+.|+.++-.......-........+.
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kak-- 85 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAK-- 85 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHH--
Confidence 45555666677788899999888873 2222 24577899999999998876655544332211111110
Q ss_pred HHHHHHHHHH-HHHHcCChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----C--C
Q 002273 156 LAIVLTDLGT-SLKLAGNTQDGIQKYYEALKIDPHY------APAYYNLGVVYSELMQYDTALGCYEKAALE----R--P 222 (944)
Q Consensus 156 la~~~~~lg~-~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~--p 222 (944)
.+.+...+-. +....+....-+..+.+.++..... ...-..+..+|...++|.+|+......+.. + +
T Consensus 86 aaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~ 165 (411)
T KOG1463|consen 86 AAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKI 165 (411)
T ss_pred HHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccccc
Confidence 0111111111 1122234445555555555442221 122345678888899999998887776542 1 2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002273 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLA 253 (944)
Q Consensus 223 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 253 (944)
.-.+++..=...|....+..+|...+..+-.
T Consensus 166 lLvev~llESK~y~~l~Nl~KakasLTsART 196 (411)
T KOG1463|consen 166 LLVEVHLLESKAYHALRNLPKAKASLTSART 196 (411)
T ss_pred ceeeehhhhhHHHHHHhcchhHHHHHHHHHH
Confidence 2345566667778888888888877766543
No 473
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=93.44 E-value=0.45 Score=58.67 Aligned_cols=154 Identities=21% Similarity=0.190 Sum_probs=118.7
Q ss_pred hcCCHHHHHH------HHHH-HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh--------CCCCHHHHHHHHH
Q 002273 301 LEGDINQGVA------YYKK-ALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF--------NPHCAEACNNLGV 365 (944)
Q Consensus 301 ~~~~~~~A~~------~~~~-al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~ 365 (944)
..+.+.++.+ .+.. .-...|.....+..++.++...+++++|+..-.++.-+ .|+....+.+++.
T Consensus 944 ~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal 1023 (1236)
T KOG1839|consen 944 LEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLAL 1023 (1236)
T ss_pred cccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHH
Confidence 3566666666 4442 23446778889999999999999999999988877654 3455778888998
Q ss_pred HHHHCCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHH
Q 002273 366 IYKDRDNLDKAVECYQMALSI--------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP--------TYAEAYN 429 (944)
Q Consensus 366 ~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p--------~~~~a~~ 429 (944)
.....++...|...+.++..+ .|.-.....+++.++...++++.|+++++.|+..+. .....+.
T Consensus 1024 ~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~ 1103 (1236)
T KOG1839|consen 1024 YEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYH 1103 (1236)
T ss_pred HHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHH
Confidence 888899999999999988876 355556778899999999999999999999998642 2245666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh
Q 002273 430 NLGVLYRDAGSISLAIDAYEQCLKI 454 (944)
Q Consensus 430 ~la~~~~~~g~~~eA~~~~~~al~l 454 (944)
.+++++...+++..|....+....+
T Consensus 1104 ~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1104 ALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred HHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 7788888888887777777666554
No 474
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=93.39 E-value=0.61 Score=42.18 Aligned_cols=74 Identities=20% Similarity=0.195 Sum_probs=55.4
Q ss_pred CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH-hCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhh
Q 002273 390 FSQSLNNLGVVYTVQG---KMDAAAEMIEKAIA-ANPTY-AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 463 (944)
Q Consensus 390 ~~~~~~~la~~~~~~g---~~~~A~~~l~~al~-~~p~~-~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~ 463 (944)
..+..+++++++.... +..+.+.+++..++ -+|+. -+..+.|+..+.+.|+|++++.+....++..|++.++..
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 3557778888877654 45567888888886 44433 467778888888888888888888888888888877654
No 475
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=93.36 E-value=1 Score=41.78 Aligned_cols=86 Identities=10% Similarity=-0.042 Sum_probs=75.6
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 002273 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (944)
Q Consensus 48 ~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (944)
...++.........++.+++..++..+--..|+.++.-..-|..+...|++.+|+..++...+..+..+...-.++.|+.
T Consensus 10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~ 89 (153)
T TIGR02561 10 LGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLN 89 (153)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 45667777777889999999999999888999999999999999999999999999999998888888888888899988
Q ss_pred HcCCHH
Q 002273 128 DEGRLV 133 (944)
Q Consensus 128 ~~g~~~ 133 (944)
-+|+.+
T Consensus 90 al~Dp~ 95 (153)
T TIGR02561 90 AKGDAE 95 (153)
T ss_pred hcCChH
Confidence 888754
No 476
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=93.29 E-value=1.1 Score=47.91 Aligned_cols=97 Identities=18% Similarity=0.169 Sum_probs=57.7
Q ss_pred CCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCCC
Q 002273 694 ITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYA 773 (944)
Q Consensus 694 ~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~ 773 (944)
..++.+.-..+.+..- +.++++.+.+ ..++...+..+..| ...-+.+.+... -.+..+.+..+|+++-+-
T Consensus 137 w~~~~~~~l~~~l~~~-~~~ivl~g~~----~e~~~~~~i~~~~~-~~~~~~~~~~~~-l~e~~~li~~~~l~I~~D--- 206 (279)
T cd03789 137 WPAERFAALADRLLAR-GARVVLTGGP----AERELAEEIAAALG-GPRVVNLAGKTS-LRELAALLARADLVVTND--- 206 (279)
T ss_pred CCHHHHHHHHHHHHHC-CCEEEEEech----hhHHHHHHHHHhcC-CCccccCcCCCC-HHHHHHHHHhCCEEEeeC---
Confidence 3444555555555444 6777777654 22333333223333 123344566553 588999999999998332
Q ss_pred CcccHHHhhhcCCcEEecCCCcccccch
Q 002273 774 GTTTTCESLYMGVPCVTMAGSVHAHNVG 801 (944)
Q Consensus 774 ~~~t~~eal~~gvPvvt~~g~~~~~r~~ 801 (944)
.| +.-=|.++|+|+|++-|.+...+.+
T Consensus 207 sg-~~HlA~a~~~p~i~l~g~~~~~~~~ 233 (279)
T cd03789 207 SG-PMHLAAALGTPTVALFGPTDPARTG 233 (279)
T ss_pred CH-HHHHHHHcCCCEEEEECCCCccccC
Confidence 12 2233458899999999988777753
No 477
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.19 E-value=11 Score=43.24 Aligned_cols=101 Identities=14% Similarity=0.065 Sum_probs=71.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 002273 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLG 198 (944)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 198 (944)
+.+-|.-.++..+|..+++.|...+...|.+...... +.....+..+|....+.+.|.+++++|-+.+|.++-....+-
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~F-aK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~ 435 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRF-AKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML 435 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHH-HHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 3344555667777788888887777777766554333 666777777777777777777777777777777777777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh
Q 002273 199 VVYSELMQYDTALGCYEKAALE 220 (944)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~al~~ 220 (944)
.+....++-++|+.+..+....
T Consensus 436 ~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 436 QSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHhcchHHHHHHHHHHHhh
Confidence 7777777777777777766543
No 478
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=93.02 E-value=0.28 Score=51.27 Aligned_cols=205 Identities=14% Similarity=0.143 Sum_probs=89.8
Q ss_pred HHHHHhHhCCccEEEecCCCCCCCchhhhcc-CCcceeeecccCCCCCCCCCccEEEecCCCCCcccccc--cccceEEc
Q 002273 580 KVAAMVREDKIDILVELTGHTANNKLGMMAC-QPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPETKQK--HVEELIRL 656 (944)
Q Consensus 580 ~~a~~i~~d~idilvdl~g~t~~~~~~~~a~-r~ApvQ~~~~G~p~t~g~~~~Dy~i~d~~~~p~~~~~~--~~e~~~~l 656 (944)
.+++.||+.+.|++||+.+.. +..+++. -.||.-+.+-+... .+.-..+..+.... .+...+.+ ..+.+.-+
T Consensus 3 ~l~~~Lr~~~yD~vid~~~~~---~s~~l~~~~~a~~riG~~~~~~-~~~~~~~~~~~~~~-~~~~v~~~~~ll~~~~~~ 77 (247)
T PF01075_consen 3 ALIKKLRKEKYDLVIDLQGSF---RSALLARLSGAKIRIGFGKDDR-GRSLFYNRKVDRPP-NKHMVDRYLSLLSELLGI 77 (247)
T ss_dssp HHHHHHCTSB-SEEEE-S-SH---HHHHHTCCCSBSEEEEE-TTTS-GGGGGESEEE-TTS-SSSHHHHHHHHHHHHHTS
T ss_pred HHHHHHhCCCCCEEEECCCCc---cHHHHHHHHhhccccccCccch-hhhhcccccccccc-cchHHHHHHHHHHHhcCC
Confidence 578999999999999997753 4433333 56777776644443 11122222222211 11111111 11122222
Q ss_pred CCCccccCCCCCCC-----CCCCCCC-CCCCCeEEEecCC-CCcC-CHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHH
Q 002273 657 PECFLCYTPSPEAG-----PVCPTPA-LTNGFITFGSFNN-LAKI-TPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRH 728 (944)
Q Consensus 657 p~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~f~~~~~-~~K~-~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~ 728 (944)
|... ..|.-..+ ....... .....|+|.-+.+ ..|. ..+.+..+.+-+.... ..++|.+++. ....
T Consensus 78 ~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~-~~vvl~g~~~---~~~~ 151 (247)
T PF01075_consen 78 PYPS--TKPELPLSEEEEAAARELLKSKDKPYIGINPGASWPSKRWPAEKWAELIERLKERG-YRVVLLGGPE---EQEK 151 (247)
T ss_dssp -SSS--SSS----THHHHTTHHTTTT-TTSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT--EEEE--SSH---HHHH
T ss_pred CCCC--CCcCCcCCHHHHHHHHHhhhhccCCeEEEeecCCCccccCCHHHHHHHHHHHHhhC-ceEEEEccch---HHHH
Confidence 2110 11100000 0001111 2334454444432 2333 4444444444443333 4566666551 1111
Q ss_pred HHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccch
Q 002273 729 RFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVG 801 (944)
Q Consensus 729 ~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~ 801 (944)
.....+ ..+.....+.+.+... -.+..+.+..+|+++ -+-+-.+==|-++|+|+|++-|.+...|.+
T Consensus 152 ~~~~~~-~~~~~~~~~~~~~~~~-l~e~~ali~~a~~~I----~~Dtg~~HlA~a~~~p~v~lfg~t~~~~~~ 218 (247)
T PF01075_consen 152 EIADQI-AAGLQNPVINLAGKTS-LRELAALISRADLVI----GNDTGPMHLAAALGTPTVALFGPTNPERWG 218 (247)
T ss_dssp HHHHHH-HTTHTTTTEEETTTS--HHHHHHHHHTSSEEE----EESSHHHHHHHHTT--EEEEESSS-HHHHS
T ss_pred HHHHHH-HHhcccceEeecCCCC-HHHHHHHHhcCCEEE----ecCChHHHHHHHHhCCEEEEecCCCHHHhC
Confidence 222222 2233223577777754 689999999999997 222222334677999999999998777765
No 479
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=92.89 E-value=0.14 Score=49.94 Aligned_cols=92 Identities=20% Similarity=0.268 Sum_probs=57.7
Q ss_pred CcEEEccCccCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcc---cccchhHHHhhcCCccccc--
Q 002273 742 LRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVH---AHNVGVSLLTKVGLKHLIA-- 815 (944)
Q Consensus 742 ~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~---~~r~~~~~l~~~gl~~~v~-- 815 (944)
.+|.+.+..+ +....+..+||++ . +|++|+.|++.+|+|.|..|-... ....-+..+...|....+.
T Consensus 55 ~~v~~~~~~~---~m~~~m~~aDlvI----s~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~g~~~~~~~~ 127 (167)
T PF04101_consen 55 PNVKVFGFVD---NMAELMAAADLVI----SHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKKGAAIMLDES 127 (167)
T ss_dssp CCCEEECSSS---SHHHHHHHHSEEE----ECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHCCCCCCSECC
T ss_pred CcEEEEechh---hHHHHHHHcCEEE----eCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHcCCccccCcc
Confidence 5788888865 3555567799998 5 677899999999999887765541 2233445566667665442
Q ss_pred -CCHHHHHHHHHHHhcCHHHHHHHHH
Q 002273 816 -KNEDEYVQLALQLASDVTALANLRM 840 (944)
Q Consensus 816 -~~~~~y~~~a~~l~~d~~~~~~~r~ 840 (944)
.+++...+....+.+++..+..+..
T Consensus 128 ~~~~~~L~~~i~~l~~~~~~~~~~~~ 153 (167)
T PF04101_consen 128 ELNPEELAEAIEELLSDPEKLKEMAK 153 (167)
T ss_dssp C-SCCCHHHHHHCHCCCHH-SHHHCC
T ss_pred cCCHHHHHHHHHHHHcCcHHHHHHHH
Confidence 3356677778888888876554433
No 480
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.86 E-value=1.3 Score=43.52 Aligned_cols=103 Identities=11% Similarity=-0.129 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHH
Q 002273 82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAI 158 (944)
Q Consensus 82 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 158 (944)
..++..+|..|.+.|+.++|++.|.++.+..... .+.++.+..+....+++.....+..++-...... ..+.....
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~-~d~~~~nr 114 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKG-GDWERRNR 114 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcc-chHHHHHH
Confidence 3577888999999999999999999877654322 3566777788888889998888888886654331 11333344
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHh
Q 002273 159 VLTDLGTSLKLAGNTQDGIQKYYEALK 185 (944)
Q Consensus 159 ~~~~lg~~~~~~g~~~~A~~~~~~al~ 185 (944)
+....|..+...++|.+|-+.|-.+..
T Consensus 115 lk~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 115 LKVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHccCc
Confidence 444455566666777777777665543
No 481
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.81 E-value=1.4 Score=40.97 Aligned_cols=72 Identities=14% Similarity=0.149 Sum_probs=39.9
Q ss_pred CCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 002273 370 RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSI 441 (944)
Q Consensus 370 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~ 441 (944)
.++.+++...+...--+.|+.++.-..-|+++...|++.+|+..++...+..+..+...-.++.|+..+|+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 455555555555555555555555555555555555555555555555555555455555555555555553
No 482
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=92.81 E-value=13 Score=38.28 Aligned_cols=173 Identities=14% Similarity=0.010 Sum_probs=96.7
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 002273 52 LSYANILRSRNKFVDALALYEIVLEKDSG--------NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (944)
Q Consensus 52 ~~~A~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (944)
+++|+...+.+++++|+..|.+++...-. .......++..|...|++..--+.....- +++....
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sr-------e~m~~ft 79 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSR-------EAMEDFT 79 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhH-------HHHHHhc
Confidence 78889999999999999999999876221 23456677777877777765433332211 1111111
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002273 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE 203 (944)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 203 (944)
-.+..+..+..++..|..++.......++..+. +-|.+-=+..++ ...-..+..++++
T Consensus 80 --------k~k~~KiirtLiekf~~~~dsl~dqi~v~~~~i---------ewA~rEkr~fLr-----~~Le~Kli~l~y~ 137 (421)
T COG5159 80 --------KPKITKIIRTLIEKFPYSSDSLEDQIKVLTALI---------EWADREKRKFLR-----LELECKLIYLLYK 137 (421)
T ss_pred --------chhHHHHHHHHHHhcCCCCccHHHHHHHHHHHH---------HHHHHHHHHHHH-----HHHHHHHHHHHHh
Confidence 112233444445554444333222222221111 111111111111 1233456778889
Q ss_pred cCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002273 204 LMQYDTALGCYEKAALE------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLA 253 (944)
Q Consensus 204 ~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 253 (944)
.|+|.+|+......+.. .+.-...+..-..+|....+..++...+..+-.
T Consensus 138 ~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt 193 (421)
T COG5159 138 TGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAART 193 (421)
T ss_pred cccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHH
Confidence 99999999887766542 234456667777788888888777776665543
No 483
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=92.72 E-value=0.3 Score=53.84 Aligned_cols=87 Identities=17% Similarity=0.099 Sum_probs=55.4
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002273 371 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ---GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 447 (944)
Q Consensus 371 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~ 447 (944)
+....|+..|.+++...|.....+.+.+.++.+. |+.-.|+.-...++.++|....+++.|+.++..++++.+|+++
T Consensus 388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~ 467 (758)
T KOG1310|consen 388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSC 467 (758)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhh
Confidence 3445566666666666666666666666666553 3445566666666666666666777777777777777777666
Q ss_pred HHHHHhhCCC
Q 002273 448 YEQCLKIDPD 457 (944)
Q Consensus 448 ~~~al~l~P~ 457 (944)
...+....|.
T Consensus 468 ~~alq~~~Pt 477 (758)
T KOG1310|consen 468 HWALQMSFPT 477 (758)
T ss_pred HHHHhhcCch
Confidence 6666555564
No 484
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=92.60 E-value=0.43 Score=52.71 Aligned_cols=107 Identities=14% Similarity=0.030 Sum_probs=91.0
Q ss_pred CCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh---CCHHHHHHHHHHHHhcCCCCHHHH
Q 002273 43 LKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQ---NMGRLAFDSFSEAVKLDPQNACAH 119 (944)
Q Consensus 43 ~~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~ 119 (944)
.-+...+..+..+.-.+..+.+..|+..|.+++...|.....+...+.++++. |+.-.|+.....+++++|....++
T Consensus 369 eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah 448 (758)
T KOG1310|consen 369 ELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAH 448 (758)
T ss_pred hchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHH
Confidence 33445566666677777777889999999999999999999999999888765 466678888889999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 002273 120 THCGILYKDEGRLVEAAESYHKALSADPSY 149 (944)
Q Consensus 120 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 149 (944)
+.|+.++..++++.+|+.+...+....|.+
T Consensus 449 ~~la~aL~el~r~~eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 449 FRLARALNELTRYLEALSCHWALQMSFPTD 478 (758)
T ss_pred HHHHHHHHHHhhHHHhhhhHHHHhhcCchh
Confidence 999999999999999999998888888854
No 485
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=92.59 E-value=0.18 Score=32.59 Aligned_cols=29 Identities=45% Similarity=0.623 Sum_probs=14.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 002273 394 LNNLGVVYTVQGKMDAAAEMIEKAIAANP 422 (944)
Q Consensus 394 ~~~la~~~~~~g~~~~A~~~l~~al~~~p 422 (944)
+..+|.++...+++++|+..++++++..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 44455555555555555555555554444
No 486
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=92.55 E-value=9.3 Score=40.09 Aligned_cols=27 Identities=7% Similarity=-0.181 Sum_probs=19.9
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHH
Q 002273 321 HYADAMYNLGVAYGEMLKFDMAIVFYE 347 (944)
Q Consensus 321 ~~~~~~~~la~~~~~~g~~~~A~~~~~ 347 (944)
.+++.+..+|..+.+.|++.+|..+|-
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 467888899999999998888877663
No 487
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=92.53 E-value=11 Score=41.15 Aligned_cols=61 Identities=26% Similarity=0.438 Sum_probs=41.0
Q ss_pred HHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEe-cCCCcccccchhHHHhhcCCcccccCCHHHHHH
Q 002273 755 DHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVT-MAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQ 823 (944)
Q Consensus 755 ~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt-~~g~~~~~r~~~~~l~~~gl~~~v~~~~~~y~~ 823 (944)
+.+.++.-+|+++ -+|||.+.||-.+|||+|. .+|..+. +. -.|...|+ =+-+.|+++-+.
T Consensus 241 d~~~Ll~~a~l~I----g~ggTMa~EAA~LGtPaIs~~~g~~~~--vd-~~L~~~Gl-l~~~~~~~ei~~ 302 (335)
T PF04007_consen 241 DGLDLLYYADLVI----GGGGTMAREAALLGTPAISCFPGKLLA--VD-KYLIEKGL-LYHSTDPDEIVE 302 (335)
T ss_pred CHHHHHHhcCEEE----eCCcHHHHHHHHhCCCEEEecCCcchh--HH-HHHHHCCC-eEecCCHHHHHH
Confidence 4456667788988 7899999999999999997 4444211 11 23555576 233567777665
No 488
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=92.48 E-value=1.1 Score=40.60 Aligned_cols=73 Identities=11% Similarity=0.063 Sum_probs=37.2
Q ss_pred ChHHHHHHHHHHHhCC---CHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHH
Q 002273 47 EGKDALSYANILRSRN---KFVDALALYEIVLE-KDSG-NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAH 119 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g---~~~~A~~~~~~al~-~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 119 (944)
+.+..|.+|..+.... +..+-+.+++.+++ ..|. .-+..+.++..+++.++|++++.+.+..++..|+|..+.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~ 108 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQAL 108 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 3444555555554443 23344555555554 2232 334555555555555555555555555555555555443
No 489
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=92.41 E-value=22 Score=39.86 Aligned_cols=208 Identities=13% Similarity=0.023 Sum_probs=0.0
Q ss_pred CCCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 002273 42 TLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTH 121 (944)
Q Consensus 42 ~~~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 121 (944)
+..+.+...++.+-.++-.+-++.-...++.+++... ++-.+++.++.||... ..++-...+++.++.+-++...-..
T Consensus 60 s~~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~Re 137 (711)
T COG1747 60 SKQLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRE 137 (711)
T ss_pred hhccccchHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHH
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCC---ChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC--HHHHHH
Q 002273 122 CGILYKDEGRLVEAAESYHKALSADPS---YKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY--APAYYN 196 (944)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~ 196 (944)
|+..|.+ ++.+++..+|.+++...-. +.........+-...| .+.+.-+....+.-...... ..++..
T Consensus 138 La~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~------dD~D~fl~l~~kiqt~lg~~~~~Vl~qd 210 (711)
T COG1747 138 LADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIG------DDKDFFLRLQKKIQTKLGEGRGSVLMQD 210 (711)
T ss_pred HHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhcc------ccHHHHHHHHHHHHHhhccchHHHHHHH
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--------------------cCCHHHHHHHHHHHHHhCC
Q 002273 197 LGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN--------------------RGDLESAIACYERCLAVSP 256 (944)
Q Consensus 197 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~--------------------~g~~~~A~~~~~~al~~~p 256 (944)
+-.-|....++++|++.+...++.+..+..+.-.+...+.. -.++.+++.-|++.+..+.
T Consensus 211 v~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m~f~e 290 (711)
T COG1747 211 VYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLMHFDE 290 (711)
T ss_pred HHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHheecc
Q ss_pred Cc
Q 002273 257 NF 258 (944)
Q Consensus 257 ~~ 258 (944)
.+
T Consensus 291 Gn 292 (711)
T COG1747 291 GN 292 (711)
T ss_pred Cc
No 490
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.34 E-value=8.9 Score=43.46 Aligned_cols=49 Identities=24% Similarity=0.320 Sum_probs=36.0
Q ss_pred CCHHHHHHHHHHHHH------------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002273 205 MQYDTALGCYEKAAL------------ERPMYAEAYCNMGVIYKNRGDLESAIACYERCLA 253 (944)
Q Consensus 205 g~~~~A~~~~~~al~------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 253 (944)
..|++|...|.-+.+ ..|.+.+.+..++.+...+|+.+-|....++++-
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly 312 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLY 312 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 346666666666654 3466778888899999999998888888777753
No 491
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.07 E-value=12 Score=42.45 Aligned_cols=102 Identities=18% Similarity=0.116 Sum_probs=72.8
Q ss_pred hCCCHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-----C----------
Q 002273 60 SRNKFVDALALYEIVLEK------------DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL-----D---------- 112 (944)
Q Consensus 60 ~~g~~~~A~~~~~~al~~------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~---------- 112 (944)
....|++|...|.-+... .|-+.+.++.++.+...+|+.+-|....++++=. .
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~c 329 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNC 329 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccc
Confidence 346688888888776654 4567889999999999999999888888777621 1
Q ss_pred ------CCCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhHHhHHHHHHH
Q 002273 113 ------PQNAC---AHTHCGILYKDEGRLVEAAESYHKALSADPS-YKPAAECLAIVLT 161 (944)
Q Consensus 113 ------p~~~~---~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~ 161 (944)
|.|-. +++..-..+.+.|-+..|.++.+-.++++|. ++-....+...|.
T Consensus 330 RL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~A 388 (665)
T KOG2422|consen 330 RLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYA 388 (665)
T ss_pred cCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHH
Confidence 22222 2333345566789999999999999999998 6655443333333
No 492
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=92.01 E-value=0.25 Score=48.76 Aligned_cols=61 Identities=23% Similarity=0.317 Sum_probs=44.4
Q ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChh
Q 002273 91 CLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKP 151 (944)
Q Consensus 91 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 151 (944)
...+.++.+.|.+.|.+++++-|+....|+.+|....+.|+++.|...|++.++++|.+..
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence 3445667777777777777777777777777777777777777777777777777776543
No 493
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.99 E-value=1.8 Score=42.51 Aligned_cols=62 Identities=16% Similarity=0.112 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 002273 324 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVECYQMALS 385 (944)
Q Consensus 324 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~ 385 (944)
.++..+|..|.+.|+.++|++.|.++.+..... .+.++.+..+....+++.....+..++-.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345566666666666666666666655443221 34455555555555555555555555543
No 494
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=91.96 E-value=18 Score=37.97 Aligned_cols=145 Identities=12% Similarity=0.023 Sum_probs=86.4
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHH
Q 002273 86 IGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGT 165 (944)
Q Consensus 86 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~ 165 (944)
+.+-....+..+..+-++....+++++|+.+.++..++.-- ..-..+|.+.++++++.... .++..+
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~-----------~yr~sq 254 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGET-----------IYRQSQ 254 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHH-----------HHhhHH
Confidence 44455556677788888888899999999988888877543 33467788888888775322 111111
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHH
Q 002273 166 SLKLAGNTQDGIQKYYEALKIDPH-YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY--AEAYCNMGVIYKNRGDLE 242 (944)
Q Consensus 166 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~ 242 (944)
.....|...+|. .+.+.+ ...+...++.+..++|+..+|++.++...+..|-. ..++-++...+....-|.
T Consensus 255 q~qh~~~~~da~------~rRDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYA 328 (556)
T KOG3807|consen 255 QCQHQSPQHEAQ------LRRDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYA 328 (556)
T ss_pred HHhhhccchhhh------hhcccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222222221 122221 12334568888889999999999998888776631 234445555555554444
Q ss_pred HHHHHHH
Q 002273 243 SAIACYE 249 (944)
Q Consensus 243 ~A~~~~~ 249 (944)
+....+-
T Consensus 329 DvqavLa 335 (556)
T KOG3807|consen 329 DVQAVLA 335 (556)
T ss_pred HHHHHHH
Confidence 4443333
No 495
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.70 E-value=30 Score=39.90 Aligned_cols=97 Identities=18% Similarity=0.174 Sum_probs=85.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 002273 50 DALSYANILRSRNKFVDALALYEIVLEKDSGN------VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (944)
Q Consensus 50 ~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (944)
.+...|...++..+|..+++.|+..+...|.+ +.....++.||....+.+.|.+.+++|-+.+|.++-.....-
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~ 435 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML 435 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 45678889999999999999999999877654 456678899999999999999999999999999999888889
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcC
Q 002273 124 ILYKDEGRLVEAAESYHKALSAD 146 (944)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~ 146 (944)
.+....+.-++|+....+.....
T Consensus 436 ~~~~~E~~Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 436 QSFLAEDKSEEALTCLQKIKSSE 458 (872)
T ss_pred HHHHHhcchHHHHHHHHHHHhhh
Confidence 99999999999999988876654
No 496
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=91.64 E-value=20 Score=37.68 Aligned_cols=35 Identities=20% Similarity=0.261 Sum_probs=22.1
Q ss_pred hCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHh
Q 002273 220 ERPMYAEAYCNMGV-IYKNRGDLESAIACYERCLAV 254 (944)
Q Consensus 220 ~~p~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~ 254 (944)
-.|...+.+...+. .|...++...|...+....+.
T Consensus 135 ~~~~e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 135 GYPSEADLFIARAVLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp TSS--HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred cCCcchhHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 34555555555544 466779999998887776655
No 497
>PRK11619 lytic murein transglycosylase; Provisional
Probab=91.46 E-value=38 Score=40.66 Aligned_cols=139 Identities=9% Similarity=-0.137 Sum_probs=69.8
Q ss_pred hhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCH---HH
Q 002273 299 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL---DK 375 (944)
Q Consensus 299 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~---~~ 375 (944)
....++++.+...+..+-..........+-+|.++...|+.++|...|+++.. . .+ .|-.++.-. +|.. ..
T Consensus 322 Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~-~-~~--fYG~LAa~~--Lg~~~~~~~ 395 (644)
T PRK11619 322 ALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ-Q-RG--FYPMVAAQR--LGEEYPLKI 395 (644)
T ss_pred HHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc-C-CC--cHHHHHHHH--cCCCCCCCC
Confidence 33555665555555554333334455566666666666666666666666533 1 11 121222111 1110 00
Q ss_pred H-HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002273 376 A-VECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 450 (944)
Q Consensus 376 A-~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~ 450 (944)
. ...-...+.. ......+..+...|+..+|...+..++.. .+..-...++.+....|.++.|+....+
T Consensus 396 ~~~~~~~~~~~~-----~~~~~ra~~L~~~g~~~~a~~ew~~~~~~--~~~~~~~~la~~A~~~g~~~~ai~~~~~ 464 (644)
T PRK11619 396 DKAPKPDSALTQ-----GPEMARVRELMYWNMDNTARSEWANLVAS--RSKTEQAQLARYAFNQQWWDLSVQATIA 464 (644)
T ss_pred CCCCchhhhhcc-----ChHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCHHHHHHHHhh
Confidence 0 0000000000 12344556667777777777777776664 2345566677777777777777766543
No 498
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=91.23 E-value=20 Score=37.64 Aligned_cols=58 Identities=12% Similarity=-0.141 Sum_probs=44.1
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q 002273 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL 111 (944)
Q Consensus 52 ~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 111 (944)
...-+...+..+..+-++....+++++|+-+.++..++.-- ..-..+|.+.++++++.
T Consensus 188 ~eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka 245 (556)
T KOG3807|consen 188 DEIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKA 245 (556)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHH
Confidence 34445556778888889999999999999999998887643 33466788888887764
No 499
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=91.16 E-value=1 Score=49.28 Aligned_cols=77 Identities=14% Similarity=0.121 Sum_probs=47.1
Q ss_pred cCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCC
Q 002273 693 KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY 772 (944)
Q Consensus 693 K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~ 772 (944)
++-|.++++..++.+.. .++++.+.+ + . +.+++..... ..+.|.+. . ...+..||++| .
T Consensus 183 ~llP~~~~aa~~L~~~~--~~~~i~~a~--~--~-~~i~~~~~~~----~~~~~~~~---~---~~~m~~aDlal----~ 241 (347)
T PRK14089 183 RLMPIFKELAKKLEGKE--KILVVPSFF--K--G-KDLKEIYGDI----SEFEISYD---T---HKALLEAEFAF----I 241 (347)
T ss_pred HHHHHHHHHHHHHhhcC--cEEEEeCCC--c--H-HHHHHHHhcC----CCcEEecc---H---HHHHHhhhHHH----h
Confidence 56677788887777653 344444332 1 1 3444433321 12334321 1 34667899999 6
Q ss_pred CCcccHHHhhhcCCcEEe
Q 002273 773 AGTTTTCESLYMGVPCVT 790 (944)
Q Consensus 773 ~~~~t~~eal~~gvPvvt 790 (944)
..||+|+|++.+|+|.|.
T Consensus 242 ~SGT~TLE~al~g~P~Vv 259 (347)
T PRK14089 242 CSGTATLEAALIGTPFVL 259 (347)
T ss_pred cCcHHHHHHHHhCCCEEE
Confidence 778999999999999665
No 500
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.96 E-value=47 Score=40.76 Aligned_cols=59 Identities=17% Similarity=0.108 Sum_probs=41.8
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHH-----HHHHHHHHHHhCCHHHHHHHHHHHH
Q 002273 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVEA-----HIGKGICLQMQNMGRLAFDSFSEAV 109 (944)
Q Consensus 51 ~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~-----~~~la~~~~~~g~~~~A~~~~~~al 109 (944)
+-..-..++....|++|+.+.+-....+|..... ....|..++.+++|++|+..|.+..
T Consensus 310 ~~~qi~~lL~~k~fe~ai~L~e~~~~~~p~~~~~i~~~~~l~~a~~lf~q~~f~ea~~~F~~~~ 373 (877)
T KOG2063|consen 310 FEKQIQDLLQEKSFEEAISLAEILDSPNPKEKRQISCIKILIDAFELFLQKQFEEAMSLFEKSE 373 (877)
T ss_pred hHHHHHHHHHhhhHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence 4445567777888999999988776656653211 1122666889999999999999864
Done!