Query 002273
Match_columns 944
No_of_seqs 1680 out of 3923
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 19:38:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002273.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002273hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gyw_A UDP-N-acetylglucosamine 100.0 1E-117 4E-122 1064.5 63.3 588 254-881 4-718 (723)
2 3q3e_A HMW1C-like glycosyltran 100.0 1.3E-82 4.3E-87 717.5 32.8 396 463-874 225-629 (631)
3 2vsy_A XCC0866; transferase, g 100.0 5.2E-64 1.8E-68 597.0 67.1 552 302-875 2-566 (568)
4 1w3b_A UDP-N-acetylglucosamine 100.0 1.3E-40 4.5E-45 375.8 50.1 380 52-468 3-382 (388)
5 1w3b_A UDP-N-acetylglucosamine 100.0 1.5E-37 5.2E-42 350.7 48.7 360 44-440 29-388 (388)
6 2gw1_A Mitochondrial precursor 100.0 9.8E-36 3.4E-40 348.6 43.1 387 47-465 5-489 (514)
7 2xpi_A Anaphase-promoting comp 100.0 5E-34 1.7E-38 341.2 49.7 418 46-465 82-590 (597)
8 3fp2_A TPR repeat-containing p 100.0 1.1E-34 3.9E-39 341.8 43.0 386 47-464 24-501 (537)
9 2xpi_A Anaphase-promoting comp 100.0 1.4E-33 4.8E-38 337.4 47.1 402 80-486 82-575 (597)
10 2y4t_A DNAJ homolog subfamily 100.0 5.1E-33 1.8E-37 320.0 45.6 365 42-458 20-414 (450)
11 2y4t_A DNAJ homolog subfamily 100.0 1.2E-32 3.9E-37 317.0 42.1 344 64-466 8-370 (450)
12 3ieg_A DNAJ homolog subfamily 100.0 1.5E-31 5.1E-36 296.9 48.2 341 47-439 2-354 (359)
13 4g1t_A Interferon-induced prot 100.0 2E-31 6.7E-36 308.9 39.4 393 47-464 50-469 (472)
14 2gw1_A Mitochondrial precursor 100.0 4.3E-31 1.5E-35 309.1 41.7 355 47-432 38-490 (514)
15 3ieg_A DNAJ homolog subfamily 100.0 4E-30 1.4E-34 285.3 44.7 326 81-465 2-346 (359)
16 3fp2_A TPR repeat-containing p 100.0 1.8E-30 6.2E-35 305.9 40.0 353 45-429 56-500 (537)
17 3hym_B Cell division cycle pro 100.0 2.4E-28 8.3E-33 267.8 34.8 287 112-435 18-314 (330)
18 3hym_B Cell division cycle pro 100.0 3E-28 1E-32 267.0 34.0 305 42-408 16-322 (330)
19 1fch_A Peroxisomal targeting s 100.0 2.1E-28 7.2E-33 273.2 30.9 311 126-454 35-359 (368)
20 2xm6_A Protein corresponding t 100.0 8.5E-26 2.9E-30 262.8 54.0 367 45-464 36-445 (490)
21 4g1t_A Interferon-induced prot 100.0 1.5E-27 5E-32 276.3 35.8 363 81-485 50-454 (472)
22 1fch_A Peroxisomal targeting s 100.0 5.6E-28 1.9E-32 269.7 27.6 313 60-420 13-359 (368)
23 4eqf_A PEX5-related protein; a 100.0 5.5E-27 1.9E-31 261.7 26.9 291 137-453 48-355 (365)
24 2xm6_A Protein corresponding t 99.9 3.3E-24 1.1E-28 249.4 46.8 370 46-467 73-480 (490)
25 3cv0_A Peroxisome targeting si 99.9 8.3E-26 2.8E-30 247.2 30.1 285 159-460 23-321 (327)
26 4eqf_A PEX5-related protein; a 99.9 5.3E-26 1.8E-30 253.7 28.4 274 46-349 63-353 (365)
27 2ooe_A Cleavage stimulation fa 99.9 2.6E-24 8.8E-29 253.0 44.2 413 43-490 8-492 (530)
28 2ooe_A Cleavage stimulation fa 99.9 1.2E-23 4E-28 247.4 45.1 380 71-483 2-447 (530)
29 2h6f_A Protein farnesyltransfe 99.9 1.1E-25 3.7E-30 250.2 24.6 254 184-468 90-362 (382)
30 3cv0_A Peroxisome targeting si 99.9 6.6E-25 2.2E-29 240.0 28.6 277 47-353 20-316 (327)
31 2h6f_A Protein farnesyltransfe 99.9 1.7E-24 5.8E-29 240.6 29.9 251 157-438 97-366 (382)
32 3e4b_A ALGK; tetratricopeptide 99.9 3.7E-24 1.3E-28 245.4 28.1 381 52-490 7-421 (452)
33 3uq3_A Heat shock protein STI1 99.9 6.6E-23 2.3E-27 215.7 30.7 238 157-433 5-255 (258)
34 3u4t_A TPR repeat-containing p 99.9 1.8E-23 6.1E-28 222.5 25.6 243 192-465 4-261 (272)
35 2pl2_A Hypothetical conserved 99.9 3.5E-23 1.2E-27 212.4 24.4 200 45-252 2-212 (217)
36 3mkr_A Coatomer subunit epsilo 99.9 1.8E-22 6.2E-27 216.9 30.7 260 90-392 7-270 (291)
37 3uq3_A Heat shock protein STI1 99.9 9.7E-23 3.3E-27 214.4 27.8 236 190-464 4-252 (258)
38 3u4t_A TPR repeat-containing p 99.9 6.2E-23 2.1E-27 218.2 26.1 258 48-369 3-267 (272)
39 2pl2_A Hypothetical conserved 99.9 7.9E-23 2.7E-27 209.8 25.9 211 188-452 2-212 (217)
40 3sf4_A G-protein-signaling mod 99.9 1.2E-23 4.3E-28 237.4 21.1 208 46-254 7-256 (406)
41 3mkr_A Coatomer subunit epsilo 99.9 2E-22 6.8E-27 216.5 28.7 260 166-463 8-273 (291)
42 3sf4_A G-protein-signaling mod 99.9 3.6E-23 1.2E-27 233.7 22.5 305 80-443 7-365 (406)
43 4a1s_A PINS, partner of inscut 99.9 2.7E-22 9.3E-27 227.4 22.8 290 156-458 47-376 (411)
44 3ro2_A PINS homolog, G-protein 99.9 6.4E-22 2.2E-26 216.5 22.8 290 159-458 7-336 (338)
45 2q7f_A YRRB protein; TPR, prot 99.9 2E-21 6.7E-26 202.6 23.7 220 43-269 18-237 (243)
46 3ro2_A PINS homolog, G-protein 99.9 1.4E-21 4.7E-26 213.8 21.9 207 47-254 4-252 (338)
47 3e4b_A ALGK; tetratricopeptide 99.9 1.6E-21 5.4E-26 223.5 23.2 354 47-457 34-424 (452)
48 4a1s_A PINS, partner of inscut 99.9 6.7E-22 2.3E-26 224.1 19.6 286 79-423 45-375 (411)
49 2q7f_A YRRB protein; TPR, prot 99.9 6.1E-21 2.1E-25 198.8 23.7 207 192-462 24-230 (243)
50 1ouv_A Conserved hypothetical 99.9 7.2E-20 2.4E-24 195.0 32.2 236 187-460 2-257 (273)
51 2ho1_A Type 4 fimbrial biogene 99.9 4E-20 1.4E-24 194.1 28.1 209 48-263 37-247 (252)
52 1ouv_A Conserved hypothetical 99.9 4E-19 1.4E-23 189.1 33.6 229 113-424 3-255 (273)
53 1xnf_A Lipoprotein NLPI; TPR, 99.9 1.1E-20 3.8E-25 200.9 21.4 247 167-448 15-269 (275)
54 2ho1_A Type 4 fimbrial biogene 99.9 7.2E-20 2.5E-24 192.1 27.0 208 191-462 37-246 (252)
55 3vtx_A MAMA; tetratricopeptide 99.9 5.8E-20 2E-24 182.9 24.7 172 80-258 3-174 (184)
56 2vq2_A PILW, putative fimbrial 99.9 1.9E-19 6.5E-24 184.7 29.1 213 187-463 4-220 (225)
57 1xnf_A Lipoprotein NLPI; TPR, 99.9 6.4E-20 2.2E-24 195.0 26.3 253 124-414 13-269 (275)
58 2vq2_A PILW, putative fimbrial 99.9 2.8E-19 9.5E-24 183.5 29.9 217 44-265 4-222 (225)
59 1xi4_A Clathrin heavy chain; a 99.8 1.1E-18 3.7E-23 210.7 37.5 361 45-456 982-1347(1630)
60 3vtx_A MAMA; tetratricopeptide 99.8 1.3E-19 4.4E-24 180.3 24.2 162 299-460 15-176 (184)
61 2ond_A Cleavage stimulation fa 99.8 1.3E-19 4.5E-24 196.7 26.0 229 133-390 33-274 (308)
62 4abn_A Tetratricopeptide repea 99.8 5.7E-20 1.9E-24 211.9 24.4 233 171-451 82-318 (474)
63 4abn_A Tetratricopeptide repea 99.8 4.2E-20 1.4E-24 213.0 23.1 220 205-482 82-313 (474)
64 4i17_A Hypothetical protein; T 99.8 1.3E-19 4.5E-24 187.2 24.4 217 46-269 5-224 (228)
65 3ulq_A Response regulator aspa 99.8 3.8E-20 1.3E-24 207.8 21.3 242 193-458 105-372 (383)
66 2ond_A Cleavage stimulation fa 99.8 1.6E-18 5.4E-23 188.2 30.1 154 306-459 116-275 (308)
67 3ulq_A Response regulator aspa 99.8 4E-19 1.4E-23 199.4 24.7 315 46-422 10-370 (383)
68 1xi4_A Clathrin heavy chain; a 99.8 7.9E-18 2.7E-22 203.3 37.0 320 54-451 1055-1381(1630)
69 4gyw_A UDP-N-acetylglucosamine 99.8 2.8E-19 9.5E-24 214.0 21.1 174 77-257 4-177 (723)
70 4i17_A Hypothetical protein; T 99.8 6.2E-18 2.1E-22 174.6 27.8 214 158-435 8-224 (228)
71 3nf1_A KLC 1, kinesin light ch 99.8 1.6E-19 5.6E-24 195.4 13.2 241 187-457 23-310 (311)
72 3q15_A PSP28, response regulat 99.8 2.7E-18 9.1E-23 192.3 22.2 239 193-455 103-366 (378)
73 1hz4_A MALT regulatory protein 99.8 4.2E-17 1.4E-21 182.1 31.2 308 83-457 15-352 (373)
74 3qky_A Outer membrane assembly 99.8 9.1E-18 3.1E-22 177.3 22.5 209 43-275 10-248 (261)
75 3qky_A Outer membrane assembly 99.8 2.2E-17 7.6E-22 174.4 24.2 178 75-273 8-199 (261)
76 3dra_A Protein farnesyltransfe 99.8 7.6E-17 2.6E-21 171.8 28.0 237 206-465 48-299 (306)
77 3nf1_A KLC 1, kinesin light ch 99.8 2.3E-18 7.8E-23 186.4 16.0 246 42-321 21-310 (311)
78 3dra_A Protein farnesyltransfe 99.8 1.7E-16 5.9E-21 169.0 29.8 236 171-434 47-302 (306)
79 1hz4_A MALT regulatory protein 99.8 1.1E-16 3.8E-21 178.7 29.3 280 117-457 15-325 (373)
80 3q15_A PSP28, response regulat 99.8 5.3E-17 1.8E-21 181.7 25.8 314 47-421 11-366 (378)
81 4e6h_A MRNA 3'-END-processing 99.8 2.4E-15 8.3E-20 177.7 40.7 419 42-460 60-576 (679)
82 2pzi_A Probable serine/threoni 99.8 2.3E-17 7.9E-22 198.7 23.7 186 44-240 390-583 (681)
83 1b89_A Protein (clathrin heavy 99.8 1.1E-18 3.7E-23 191.2 10.5 321 59-452 14-353 (449)
84 1qqe_A Vesicular transport pro 99.7 2.4E-17 8.1E-22 177.3 19.3 184 63-261 32-235 (292)
85 2pzi_A Probable serine/threoni 99.7 2.8E-17 9.4E-22 198.0 21.1 188 185-406 388-583 (681)
86 1qqe_A Vesicular transport pro 99.7 3.2E-17 1.1E-21 176.3 18.2 140 323-462 117-277 (292)
87 4ga2_A E3 SUMO-protein ligase 99.7 1.4E-17 4.8E-22 159.4 11.9 142 299-440 7-149 (150)
88 3as5_A MAMA; tetratricopeptide 99.7 2.9E-16 9.9E-21 155.2 21.6 163 299-461 18-180 (186)
89 1b89_A Protein (clathrin heavy 99.7 7.7E-18 2.6E-22 184.5 10.7 357 47-481 31-408 (449)
90 3urz_A Uncharacterized protein 99.7 6.8E-17 2.3E-21 164.2 17.0 169 47-223 3-189 (208)
91 4e6h_A MRNA 3'-END-processing 99.7 4.9E-14 1.7E-18 166.6 43.4 387 63-457 47-536 (679)
92 3as5_A MAMA; tetratricopeptide 99.7 4.9E-16 1.7E-20 153.5 22.1 171 82-259 8-178 (186)
93 2yhc_A BAMD, UPF0169 lipoprote 99.7 9.2E-16 3.1E-20 157.9 22.8 210 190-462 3-221 (225)
94 3dss_A Geranylgeranyl transfer 99.7 9.7E-15 3.3E-19 156.1 31.1 244 55-332 36-318 (331)
95 3urz_A Uncharacterized protein 99.7 3.1E-16 1.1E-20 159.3 18.5 171 81-259 3-191 (208)
96 3edt_B KLC 2, kinesin light ch 99.7 1E-16 3.6E-21 170.3 15.5 156 95-254 14-198 (283)
97 2yhc_A BAMD, UPF0169 lipoprote 99.7 1.4E-15 4.9E-20 156.5 23.3 189 47-259 3-218 (225)
98 4ga2_A E3 SUMO-protein ligase 99.7 4.8E-17 1.7E-21 155.7 11.0 144 89-239 4-148 (150)
99 3dss_A Geranylgeranyl transfer 99.7 2.9E-14 9.8E-19 152.5 31.6 173 169-370 41-240 (331)
100 3edt_B KLC 2, kinesin light ch 99.7 1.8E-16 6.2E-21 168.4 14.1 222 204-455 14-282 (283)
101 4gco_A Protein STI-1; structur 99.7 4.7E-16 1.6E-20 143.8 15.0 116 350-465 6-121 (126)
102 4gco_A Protein STI-1; structur 99.7 6.3E-16 2.1E-20 142.9 15.0 121 315-435 5-125 (126)
103 3q7a_A Farnesyltransferase alp 99.6 7.7E-14 2.6E-18 149.7 29.4 189 162-372 59-257 (349)
104 3q7a_A Farnesyltransferase alp 99.6 2.1E-14 7.2E-19 154.1 24.4 243 192-463 55-341 (349)
105 3gyz_A Chaperone protein IPGC; 99.6 3.9E-16 1.3E-20 148.7 9.1 116 344-459 23-138 (151)
106 2r5s_A Uncharacterized protein 99.6 1.8E-15 6.2E-20 149.1 13.8 163 50-253 8-172 (176)
107 3qou_A Protein YBBN; thioredox 99.6 8.3E-15 2.8E-19 156.8 19.5 169 78-253 113-283 (287)
108 2r5s_A Uncharacterized protein 99.6 1.8E-15 6.3E-20 149.0 13.2 156 82-279 6-164 (176)
109 2ifu_A Gamma-SNAP; membrane fu 99.6 4.5E-15 1.5E-19 160.7 16.6 139 323-463 76-232 (307)
110 3oy2_A Glycosyltransferase B73 99.6 1.8E-14 6.1E-19 163.2 21.3 338 511-871 1-393 (413)
111 2ifu_A Gamma-SNAP; membrane fu 99.6 1.4E-14 4.6E-19 156.9 19.3 172 60-257 3-187 (307)
112 3qou_A Protein YBBN; thioredox 99.6 1.9E-14 6.4E-19 154.0 19.6 152 302-453 130-283 (287)
113 2vsy_A XCC0866; transferase, g 99.6 2.3E-14 7.8E-19 169.5 21.8 165 61-232 2-169 (568)
114 4f3v_A ESX-1 secretion system 99.6 2.6E-15 8.9E-20 155.9 11.3 221 228-482 10-263 (282)
115 2x6q_A Trehalose-synthase TRET 99.6 4.6E-13 1.6E-17 151.7 29.8 336 509-868 39-414 (416)
116 3gyz_A Chaperone protein IPGC; 99.6 4.7E-15 1.6E-19 141.2 10.5 118 308-425 21-138 (151)
117 2vgx_A Chaperone SYCD; alterna 99.6 1.2E-14 4.2E-19 138.4 12.5 120 343-462 7-126 (148)
118 4f3v_A ESX-1 secretion system 99.6 9.9E-15 3.4E-19 151.5 12.6 208 48-265 7-247 (282)
119 3okp_A GDP-mannose-dependent a 99.6 9.9E-15 3.4E-19 164.1 13.1 335 509-870 3-381 (394)
120 2fo7_A Synthetic consensus TPR 99.6 1.7E-13 5.7E-18 127.1 19.1 135 324-458 2-136 (136)
121 2c2l_A CHIP, carboxy terminus 99.5 4E-14 1.4E-18 150.9 15.5 197 46-254 2-199 (281)
122 3rjv_A Putative SEL1 repeat pr 99.5 3.2E-13 1.1E-17 137.3 20.7 177 65-256 3-199 (212)
123 1p5q_A FKBP52, FK506-binding p 99.5 1.7E-15 5.6E-20 166.1 3.8 193 60-254 77-294 (336)
124 3rjv_A Putative SEL1 repeat pr 99.5 4.6E-13 1.6E-17 136.1 21.6 113 305-420 69-197 (212)
125 2vgx_A Chaperone SYCD; alterna 99.5 2E-14 6.9E-19 136.9 10.1 120 309-428 7-126 (148)
126 1p5q_A FKBP52, FK506-binding p 99.5 1.3E-14 4.5E-19 158.9 10.2 153 302-454 126-294 (336)
127 2gek_A Phosphatidylinositol ma 99.5 6.3E-14 2.1E-18 158.2 15.7 331 506-870 16-385 (406)
128 2xcb_A PCRH, regulatory protei 99.5 5.6E-14 1.9E-18 132.8 12.3 120 344-463 5-124 (142)
129 2c2l_A CHIP, carboxy terminus 99.5 9.5E-14 3.3E-18 148.0 13.0 101 158-258 5-105 (281)
130 1hh8_A P67PHOX, NCF-2, neutrop 99.5 8.6E-13 2.9E-17 134.0 19.6 134 324-460 7-156 (213)
131 2xcb_A PCRH, regulatory protei 99.5 7.7E-14 2.6E-18 131.9 10.8 127 310-436 5-131 (142)
132 2jjm_A Glycosyl transferase, g 99.5 5E-14 1.7E-18 158.4 11.2 268 579-875 89-392 (394)
133 2r60_A Glycosyl transferase, g 99.5 2.4E-13 8.3E-18 157.9 17.1 184 678-872 258-463 (499)
134 3upv_A Heat shock protein STI1 99.5 7.3E-13 2.5E-17 122.1 16.0 113 323-435 4-122 (126)
135 2uy1_A Cleavage stimulation fa 99.5 2.5E-10 8.4E-15 131.2 40.3 376 46-453 12-412 (493)
136 2e2e_A Formate-dependent nitri 99.5 3.5E-13 1.2E-17 132.6 14.3 128 334-461 21-151 (177)
137 1a17_A Serine/threonine protei 99.5 1.8E-12 6.3E-17 125.4 18.9 133 323-455 13-147 (166)
138 3upv_A Heat shock protein STI1 99.5 8E-13 2.7E-17 121.8 14.8 111 355-465 2-118 (126)
139 2fo7_A Synthetic consensus TPR 99.5 3.7E-12 1.3E-16 117.9 19.4 61 86-146 5-65 (136)
140 3sz7_A HSC70 cochaperone (SGT) 99.4 1E-12 3.4E-17 127.6 15.3 115 354-468 8-122 (164)
141 1dce_A Protein (RAB geranylger 99.4 3.7E-13 1.3E-17 157.2 14.5 198 241-458 45-271 (567)
142 3fro_A GLGA glycogen synthase; 99.4 1.2E-12 4.2E-17 149.2 18.5 175 677-870 247-432 (439)
143 2qfc_A PLCR protein; TPR, HTH, 99.4 3.4E-12 1.2E-16 137.0 20.8 176 79-255 72-267 (293)
144 3mv2_B Coatomer subunit epsilo 99.4 9.4E-12 3.2E-16 130.8 23.2 184 210-428 85-290 (310)
145 2iuy_A Avigt4, glycosyltransfe 99.4 8.9E-12 3E-16 136.9 24.0 301 510-870 3-337 (342)
146 2lni_A Stress-induced-phosphop 99.4 1.9E-12 6.4E-17 120.0 15.7 122 319-440 12-133 (133)
147 3u3w_A Transcriptional activat 99.4 2.4E-12 8.3E-17 138.1 18.9 172 48-219 75-265 (293)
148 2e2e_A Formate-dependent nitri 99.4 8.4E-13 2.9E-17 129.8 14.0 130 299-428 20-152 (177)
149 2qfc_A PLCR protein; TPR, HTH, 99.4 2.7E-12 9.3E-17 137.7 19.2 171 47-220 74-266 (293)
150 3c48_A Predicted glycosyltrans 99.4 1.3E-12 4.3E-17 149.2 16.6 182 677-871 238-428 (438)
151 1dce_A Protein (RAB geranylger 99.4 3.8E-12 1.3E-16 148.5 20.5 164 304-467 44-234 (567)
152 2vyi_A SGTA protein; chaperone 99.4 2.2E-12 7.5E-17 118.9 14.9 122 320-441 9-130 (131)
153 2fbn_A 70 kDa peptidylprolyl i 99.4 3E-13 1E-17 135.8 9.7 151 302-452 17-184 (198)
154 4gcn_A Protein STI-1; structur 99.4 2.8E-12 9.5E-17 118.4 14.9 113 81-194 7-119 (127)
155 3sz7_A HSC70 cochaperone (SGT) 99.4 2.3E-12 8E-17 124.9 14.8 116 320-435 8-123 (164)
156 3mv2_B Coatomer subunit epsilo 99.4 4.5E-12 1.6E-16 133.2 17.7 245 167-462 23-290 (310)
157 2hr2_A Hypothetical protein; a 99.4 1.3E-12 4.5E-17 122.6 12.1 107 358-464 12-141 (159)
158 4gcn_A Protein STI-1; structur 99.4 2.5E-12 8.5E-17 118.8 13.6 101 357-457 8-115 (127)
159 3u3w_A Transcriptional activat 99.4 7.8E-12 2.7E-16 134.1 19.4 170 84-254 77-266 (293)
160 1hh8_A P67PHOX, NCF-2, neutrop 99.4 9.9E-12 3.4E-16 126.0 19.1 141 47-190 5-154 (213)
161 1hxi_A PEX5, peroxisome target 99.4 2.4E-12 8.2E-17 117.7 13.0 101 359-459 19-119 (121)
162 1na0_A Designed protein CTPR3; 99.4 1.8E-11 6.1E-16 111.6 18.4 117 323-439 9-125 (125)
163 2lni_A Stress-induced-phosphop 99.4 8.3E-12 2.8E-16 115.6 16.1 123 42-171 10-132 (133)
164 1a17_A Serine/threonine protei 99.4 1.6E-11 5.6E-16 118.6 18.8 135 47-186 12-146 (166)
165 1kt0_A FKBP51, 51 kDa FK506-bi 99.4 3.6E-13 1.2E-17 154.0 7.6 151 301-451 246-412 (457)
166 3q49_B STIP1 homology and U bo 99.4 7.7E-12 2.6E-16 116.8 14.8 104 354-457 6-109 (137)
167 2fbn_A 70 kDa peptidylprolyl i 99.4 1.1E-12 3.9E-17 131.6 9.4 165 88-252 10-184 (198)
168 3q49_B STIP1 homology and U bo 99.3 1.4E-11 4.9E-16 115.0 15.3 124 317-440 3-131 (137)
169 4b4t_Q 26S proteasome regulato 99.3 1.2E-11 4.2E-16 140.6 17.4 230 48-318 4-245 (434)
170 1elw_A TPR1-domain of HOP; HOP 99.3 3E-11 1E-15 108.9 16.0 106 358-463 5-110 (118)
171 1hxi_A PEX5, peroxisome target 99.3 9.2E-12 3.2E-16 113.8 12.5 102 49-150 18-119 (121)
172 3gw4_A Uncharacterized protein 99.3 1.4E-11 4.9E-16 123.6 15.1 159 300-458 3-180 (203)
173 2hr2_A Hypothetical protein; a 99.3 8.9E-12 3E-16 116.9 12.2 111 47-157 10-143 (159)
174 3rkv_A Putative peptidylprolyl 99.3 1E-11 3.5E-16 120.1 12.9 103 323-425 11-131 (162)
175 2vyi_A SGTA protein; chaperone 99.3 3.3E-11 1.1E-15 110.8 15.7 123 44-173 8-130 (131)
176 1wao_1 Serine/threonine protei 99.3 5E-13 1.7E-17 153.4 4.0 141 323-463 6-159 (477)
177 3gw4_A Uncharacterized protein 99.3 1.2E-11 4.3E-16 124.0 13.8 163 58-220 2-176 (203)
178 1elw_A TPR1-domain of HOP; HOP 99.3 5.2E-11 1.8E-15 107.3 16.4 115 322-436 3-117 (118)
179 3rkv_A Putative peptidylprolyl 99.3 1.5E-11 5E-16 118.9 13.4 105 357-461 11-133 (162)
180 3s28_A Sucrose synthase 1; gly 99.3 1.8E-11 6.3E-16 146.3 16.9 186 679-874 569-777 (816)
181 2dba_A Smooth muscle cell asso 99.3 4.4E-11 1.5E-15 113.0 16.2 117 319-435 24-143 (148)
182 2kck_A TPR repeat; tetratricop 99.3 1.3E-11 4.4E-16 110.2 11.8 107 353-459 2-111 (112)
183 1kt0_A FKBP51, 51 kDa FK506-bi 99.3 2.3E-12 7.9E-17 147.3 8.5 154 94-247 246-407 (457)
184 1na0_A Designed protein CTPR3; 99.3 1E-10 3.4E-15 106.5 17.1 113 353-465 4-117 (125)
185 2bfw_A GLGA glycogen synthase; 99.3 4.5E-11 1.5E-15 120.0 16.1 155 677-847 32-197 (200)
186 2if4_A ATFKBP42; FKBP-like, al 99.3 4.8E-12 1.7E-16 138.5 8.6 139 322-460 178-334 (338)
187 2uy1_A Cleavage stimulation fa 99.3 2.7E-09 9.1E-14 122.6 31.9 337 60-451 6-380 (493)
188 2xev_A YBGF; tetratricopeptide 99.3 8.5E-11 2.9E-15 108.3 15.8 103 360-462 5-113 (129)
189 2xev_A YBGF; tetratricopeptide 99.3 6.3E-11 2.2E-15 109.2 14.0 117 324-440 3-125 (129)
190 2dba_A Smooth muscle cell asso 99.2 2.5E-10 8.6E-15 107.7 18.4 114 42-155 22-138 (148)
191 3qhp_A Type 1 capsular polysac 99.2 3.1E-11 1.1E-15 117.2 12.0 158 683-859 3-165 (166)
192 1elr_A TPR2A-domain of HOP; HO 99.2 6E-11 2.1E-15 109.1 12.8 114 323-437 4-124 (131)
193 1zu2_A Mitochondrial import re 99.2 2.2E-11 7.5E-16 114.0 9.5 94 371-464 16-130 (158)
194 1ihg_A Cyclophilin 40; ppiase 99.2 7.7E-11 2.6E-15 130.3 15.0 125 323-447 223-363 (370)
195 2kck_A TPR repeat; tetratricop 99.2 5.5E-11 1.9E-15 106.1 11.1 106 319-424 2-110 (112)
196 4b4t_Q 26S proteasome regulato 99.2 2.7E-10 9.3E-15 129.3 18.8 204 193-454 6-245 (434)
197 2f9f_A First mannosyl transfer 99.2 4.1E-11 1.4E-15 117.7 9.9 147 676-840 17-172 (177)
198 1wao_1 Serine/threonine protei 99.2 6.1E-11 2.1E-15 136.1 12.2 128 297-424 14-154 (477)
199 3ro3_A PINS homolog, G-protein 99.2 1.4E-10 4.8E-15 111.0 12.5 135 323-457 9-161 (164)
200 1elr_A TPR2A-domain of HOP; HO 99.2 2.4E-10 8.2E-15 105.0 13.6 108 356-464 3-117 (131)
201 1zu2_A Mitochondrial import re 99.2 7.7E-11 2.6E-15 110.3 10.1 100 302-425 15-125 (158)
202 3k9i_A BH0479 protein; putativ 99.2 4.5E-11 1.5E-15 108.4 8.4 93 370-462 3-98 (117)
203 2qzs_A Glycogen synthase; glyc 99.2 2.5E-10 8.5E-15 131.9 16.6 169 681-871 291-479 (485)
204 3k9i_A BH0479 protein; putativ 99.2 4.5E-11 1.5E-15 108.4 7.9 95 335-429 2-99 (117)
205 1f0k_A MURG, UDP-N-acetylgluco 99.1 6.9E-10 2.4E-14 122.9 18.4 318 511-871 7-360 (364)
206 1rzu_A Glycogen synthase 1; gl 99.1 3.7E-10 1.3E-14 130.5 16.6 166 682-869 291-476 (485)
207 2if4_A ATFKBP42; FKBP-like, al 99.1 6E-11 2E-15 129.8 8.7 155 47-225 178-333 (338)
208 2iw1_A Lipopolysaccharide core 99.1 1.4E-10 4.9E-15 128.9 11.1 171 677-867 191-370 (374)
209 3ro3_A PINS homolog, G-protein 99.1 8E-10 2.7E-14 105.6 13.6 140 117-257 10-161 (164)
210 1ihg_A Cyclophilin 40; ppiase 99.1 1.6E-09 5.5E-14 119.7 17.3 126 150-275 216-357 (370)
211 2xci_A KDO-transferase, 3-deox 99.0 4.7E-10 1.6E-14 124.2 11.4 246 578-847 100-361 (374)
212 3vue_A GBSS-I, granule-bound s 99.0 7.4E-10 2.5E-14 128.2 10.9 162 680-869 325-512 (536)
213 2kat_A Uncharacterized protein 99.0 3.8E-09 1.3E-13 95.1 11.5 81 342-422 4-84 (115)
214 2l6j_A TPR repeat-containing p 98.9 4.9E-10 1.7E-14 100.0 5.1 94 357-450 4-103 (111)
215 1na3_A Designed protein CTPR2; 98.9 1.1E-08 3.6E-13 87.3 12.0 83 357-439 9-91 (91)
216 2kat_A Uncharacterized protein 98.9 6.6E-09 2.2E-13 93.5 11.0 87 374-460 2-88 (115)
217 3otg_A CALG1; calicheamicin, T 98.9 4.1E-08 1.4E-12 110.6 20.0 167 679-867 240-409 (412)
218 2l6j_A TPR repeat-containing p 98.9 1.4E-09 4.8E-14 96.9 5.2 95 47-141 3-103 (111)
219 1uqt_A Alpha, alpha-trehalose- 98.9 2.1E-08 7E-13 114.0 15.9 175 681-868 254-454 (482)
220 1vgv_A UDP-N-acetylglucosamine 98.9 7.2E-09 2.5E-13 115.6 11.8 170 680-868 204-376 (384)
221 1na3_A Designed protein CTPR2; 98.8 2.6E-08 8.8E-13 84.9 11.9 85 321-405 7-91 (91)
222 2kc7_A BFR218_protein; tetratr 98.8 7.6E-09 2.6E-13 90.2 7.5 92 361-460 4-96 (99)
223 3beo_A UDP-N-acetylglucosamine 98.8 1.5E-08 5.1E-13 112.6 11.7 166 679-865 203-373 (375)
224 1klx_A Cysteine rich protein B 98.8 1E-07 3.4E-12 88.9 15.0 109 304-420 10-126 (138)
225 3n71_A Histone lysine methyltr 98.8 2.4E-08 8.2E-13 113.5 12.5 127 328-454 314-464 (490)
226 3tsa_A SPNG, NDP-rhamnosyltran 98.8 1.3E-07 4.3E-12 105.7 18.1 165 679-866 216-388 (391)
227 2x0d_A WSAF; GT4 family, trans 98.8 3.4E-09 1.2E-13 118.8 5.1 145 690-860 252-402 (413)
228 3ma5_A Tetratricopeptide repea 98.8 1.8E-08 6.1E-13 88.2 8.6 73 387-459 3-75 (100)
229 1klx_A Cysteine rich protein B 98.7 1.3E-07 4.5E-12 88.1 14.4 111 337-455 9-127 (138)
230 3ma5_A Tetratricopeptide repea 98.7 5.1E-08 1.7E-12 85.2 10.5 70 353-422 3-72 (100)
231 2kc7_A BFR218_protein; tetratr 98.7 2E-08 6.7E-13 87.5 7.2 92 51-150 3-95 (99)
232 3n71_A Histone lysine methyltr 98.7 1.4E-07 4.9E-12 107.2 14.4 132 50-185 311-463 (490)
233 4fzr_A SSFS6; structural genom 98.7 1.6E-07 5.6E-12 105.1 14.4 161 680-863 226-397 (398)
234 2hy7_A Glucuronosyltransferase 98.6 5.7E-08 1.9E-12 108.9 10.3 145 681-867 221-378 (406)
235 3u64_A Protein TP_0956; tetrat 98.6 4.6E-07 1.6E-11 92.5 15.5 185 65-258 49-273 (301)
236 3u64_A Protein TP_0956; tetrat 98.6 7.7E-07 2.6E-11 90.9 17.1 108 351-458 146-273 (301)
237 3ia7_A CALG4; glycosysltransfe 98.6 3.3E-06 1.1E-10 94.4 24.2 169 678-867 228-399 (402)
238 3t5t_A Putative glycosyltransf 98.6 3.9E-07 1.3E-11 102.2 16.1 175 682-871 281-476 (496)
239 3ly7_A Transcriptional activat 98.6 6.9E-07 2.4E-11 95.4 16.7 145 314-459 185-344 (372)
240 3rsc_A CALG2; TDP, enediyne, s 98.6 7.7E-06 2.6E-10 91.9 26.4 166 678-866 244-413 (415)
241 3oti_A CALG3; calicheamicin, T 98.5 1.8E-06 6.2E-11 96.5 18.9 160 679-865 230-396 (398)
242 3ly7_A Transcriptional activat 98.5 1.6E-06 5.3E-11 92.7 17.0 145 73-225 185-344 (372)
243 1v4v_A UDP-N-acetylglucosamine 98.5 1.1E-06 3.6E-11 97.5 16.0 142 680-840 197-343 (376)
244 3nb0_A Glycogen [starch] synth 98.5 2.1E-07 7.1E-12 106.2 10.1 119 744-872 494-637 (725)
245 3s2u_A UDP-N-acetylglucosamine 98.4 1.4E-06 4.6E-11 96.0 14.4 128 728-867 224-357 (365)
246 1pc2_A Mitochondria fission pr 98.4 9.6E-07 3.3E-11 81.5 10.3 92 373-464 14-110 (152)
247 3bee_A Putative YFRE protein; 98.4 1.3E-06 4.6E-11 74.5 10.5 73 387-459 2-77 (93)
248 2o6l_A UDP-glucuronosyltransfe 98.4 6.1E-06 2.1E-10 79.8 14.9 136 681-837 21-160 (170)
249 3bee_A Putative YFRE protein; 98.4 3.3E-06 1.1E-10 72.0 11.3 72 78-149 2-76 (93)
250 1pc2_A Mitochondria fission pr 98.3 5.5E-06 1.9E-10 76.5 12.2 91 340-430 15-110 (152)
251 2iyf_A OLED, oleandomycin glyc 98.3 4.3E-06 1.5E-10 94.5 13.3 169 679-869 230-402 (430)
252 3dzc_A UDP-N-acetylglucosamine 98.2 9.1E-06 3.1E-10 90.3 15.2 145 680-840 229-376 (396)
253 3ot5_A UDP-N-acetylglucosamine 98.2 4.1E-06 1.4E-10 93.3 12.3 146 679-840 222-370 (403)
254 2v5f_A Prolyl 4-hydroxylase su 98.2 1.3E-05 4.5E-10 70.1 11.7 78 46-123 3-87 (104)
255 2v5f_A Prolyl 4-hydroxylase su 98.2 1.4E-05 4.9E-10 69.9 11.8 74 358-431 6-86 (104)
256 3qww_A SET and MYND domain-con 98.2 4.9E-06 1.7E-10 92.9 10.5 93 369-461 310-423 (433)
257 3qwp_A SET and MYND domain-con 98.2 5.2E-06 1.8E-10 92.9 10.6 88 333-420 297-400 (429)
258 3qww_A SET and MYND domain-con 98.2 9.3E-06 3.2E-10 90.7 12.6 95 334-428 309-424 (433)
259 4amg_A Snogd; transferase, pol 98.1 4.6E-05 1.6E-09 85.0 17.7 163 678-864 234-398 (400)
260 2p6p_A Glycosyl transferase; X 98.1 5.2E-05 1.8E-09 84.1 17.1 163 680-866 209-379 (384)
261 4g26_A Pentatricopeptide repea 98.0 0.00055 1.9E-08 78.2 24.5 160 52-219 30-203 (501)
262 3qwp_A SET and MYND domain-con 98.0 1.5E-05 5.2E-10 89.1 11.0 98 365-462 295-413 (429)
263 4g26_A Pentatricopeptide repea 98.0 0.00062 2.1E-08 77.8 23.3 156 298-454 35-204 (501)
264 4hwg_A UDP-N-acetylglucosamine 97.9 8.6E-06 2.9E-10 89.8 6.4 324 510-865 9-374 (385)
265 2iya_A OLEI, oleandomycin glyc 97.9 0.00017 5.8E-09 81.1 17.2 164 680-866 254-421 (424)
266 2yjn_A ERYCIII, glycosyltransf 97.8 0.00011 3.7E-09 83.1 13.7 160 680-866 266-435 (441)
267 1nzn_A CGI-135 protein, fissio 97.8 9.6E-05 3.3E-09 65.5 9.4 91 373-463 17-112 (126)
268 1iir_A Glycosyltransferase GTF 97.8 0.00025 8.5E-09 79.4 15.0 158 682-865 239-399 (415)
269 1nzn_A CGI-135 protein, fissio 97.6 0.00057 1.9E-08 60.6 11.8 91 341-431 19-114 (126)
270 3rhz_A GTF3, nucleotide sugar 97.5 0.00033 1.1E-08 75.4 11.1 130 683-845 179-316 (339)
271 2pq6_A UDP-glucuronosyl/UDP-gl 97.5 0.0013 4.6E-08 74.8 16.9 150 680-844 294-451 (482)
272 1rrv_A Glycosyltransferase GTF 97.5 0.00064 2.2E-08 76.1 13.6 137 682-840 238-378 (416)
273 2c1x_A UDP-glucose flavonoid 3 97.4 0.00095 3.3E-08 75.3 14.2 149 680-844 270-424 (456)
274 3hbf_A Flavonoid 3-O-glucosylt 97.4 0.0015 5E-08 73.2 15.3 149 679-843 271-425 (454)
275 4h7y_A Dual specificity protei 97.4 0.0023 7.8E-08 57.9 13.0 107 353-460 9-129 (161)
276 3h4t_A Glycosyltransferase GTF 97.4 0.002 6.9E-08 71.6 16.1 158 680-865 220-381 (404)
277 4h7y_A Dual specificity protei 97.4 0.0021 7.1E-08 58.1 12.7 111 317-428 7-131 (161)
278 3ffl_A Anaphase-promoting comp 97.2 0.0016 5.5E-08 60.3 10.0 62 325-386 22-92 (167)
279 2acv_A Triterpene UDP-glucosyl 97.2 0.0054 1.8E-07 69.4 16.7 139 680-830 275-424 (463)
280 1qsa_A Protein (soluble lytic 97.1 0.25 8.5E-06 57.2 29.9 124 329-453 220-347 (618)
281 3ffl_A Anaphase-promoting comp 97.1 0.003 1E-07 58.6 10.3 94 49-142 21-148 (167)
282 1y8m_A FIS1; mitochondria, unk 97.0 0.0095 3.3E-07 53.6 12.3 76 388-463 36-115 (144)
283 3o48_A Mitochondria fission 1 96.8 0.0074 2.5E-07 53.5 9.9 74 390-463 39-116 (134)
284 2vch_A Hydroquinone glucosyltr 96.6 0.017 5.8E-07 65.5 14.6 137 680-830 267-428 (480)
285 3o48_A Mitochondria fission 1 96.6 0.018 6.2E-07 51.1 11.0 75 81-155 39-117 (134)
286 1y8m_A FIS1; mitochondria, unk 96.6 0.056 1.9E-06 48.6 14.3 77 355-431 37-117 (144)
287 3mkq_A Coatomer beta'-subunit; 96.4 0.37 1.3E-05 58.5 25.6 75 161-251 633-707 (814)
288 3mkq_A Coatomer beta'-subunit; 95.9 0.25 8.6E-06 60.0 20.8 44 169-217 664-707 (814)
289 3txn_A 26S proteasome regulato 95.5 1.3 4.5E-05 47.9 21.6 60 195-254 103-168 (394)
290 3kae_A CDC27, possible protein 95.5 1.5 5E-05 40.3 18.7 98 49-151 34-149 (242)
291 4ady_A RPN2, 26S proteasome re 95.4 5.3 0.00018 48.0 27.9 275 195-479 380-681 (963)
292 1psw_A ADP-heptose LPS heptosy 95.4 0.092 3.1E-06 56.6 12.4 107 682-801 182-296 (348)
293 3txn_A 26S proteasome regulato 95.3 0.51 1.8E-05 51.1 17.5 95 326-420 102-210 (394)
294 4gns_B Protein CSD3, chitin bi 95.2 0.096 3.3E-06 61.7 12.2 58 393-450 339-396 (754)
295 4b4t_P 26S proteasome regulato 95.1 1.3 4.6E-05 49.1 20.9 204 48-254 17-247 (445)
296 4gns_B Protein CSD3, chitin bi 95.0 0.15 5.1E-06 60.1 13.2 115 302-417 261-397 (754)
297 1qsa_A Protein (soluble lytic 94.9 7.2 0.00025 45.0 37.0 79 306-385 269-347 (618)
298 3mkq_B Coatomer subunit alpha; 94.5 1.4 4.6E-05 41.6 15.8 108 47-182 7-114 (177)
299 1zbp_A Hypothetical protein VP 94.1 0.75 2.5E-05 46.3 13.9 121 333-460 7-135 (273)
300 3tov_A Glycosyl transferase fa 93.8 0.089 3.1E-06 56.7 7.3 98 692-801 198-296 (349)
301 1zbp_A Hypothetical protein VP 93.7 0.62 2.1E-05 46.9 12.4 62 55-116 4-65 (273)
302 3kae_A CDC27, possible protein 93.7 4.2 0.00014 37.3 23.7 190 55-258 9-241 (242)
303 4b4t_P 26S proteasome regulato 93.7 4.8 0.00016 44.6 21.3 97 324-420 138-247 (445)
304 3mkq_B Coatomer subunit alpha; 93.6 1.7 5.8E-05 40.9 14.5 108 81-216 7-114 (177)
305 2ff4_A Probable regulatory pro 93.5 0.83 2.8E-05 49.8 14.5 112 329-453 121-233 (388)
306 2ff4_A Probable regulatory pro 93.4 0.86 2.9E-05 49.7 14.4 96 49-144 116-233 (388)
307 4ady_A RPN2, 26S proteasome re 93.2 18 0.00063 43.4 29.1 167 306-477 428-610 (963)
308 2gt1_A Lipopolysaccharide hept 92.6 0.32 1.1E-05 51.8 9.2 90 700-801 197-288 (326)
309 3hbm_A UDP-sugar hydrolase; PS 92.2 0.2 6.7E-06 51.9 6.6 77 726-814 196-272 (282)
310 4b4t_S RPN3, 26S proteasome re 92.0 0.27 9.4E-06 54.6 7.8 129 332-462 145-307 (523)
311 4b4t_S RPN3, 26S proteasome re 91.8 2.3 7.7E-05 47.3 14.7 134 55-190 143-303 (523)
312 4fhn_B Nucleoporin NUP120; pro 91.8 17 0.00058 45.7 24.9 142 85-251 815-964 (1139)
313 1ya0_A SMG-7 transcript varian 91.4 0.78 2.7E-05 51.4 10.8 75 361-435 156-230 (497)
314 1ya0_A SMG-7 transcript varian 91.2 0.7 2.4E-05 51.8 10.2 76 393-468 154-229 (497)
315 3spa_A Mtrpol, DNA-directed RN 91.1 2.3 7.7E-05 51.3 14.7 99 49-147 128-232 (1134)
316 3spa_A Mtrpol, DNA-directed RN 90.7 3.6 0.00012 49.7 15.8 97 324-420 128-230 (1134)
317 4fhn_B Nucleoporin NUP120; pro 90.3 5.8 0.0002 49.9 18.6 147 54-207 818-987 (1139)
318 4b4t_R RPN7, 26S proteasome re 89.1 1.3 4.5E-05 49.0 10.2 103 83-186 132-237 (429)
319 4b4t_R RPN7, 26S proteasome re 88.4 2.9 9.8E-05 46.2 12.3 101 48-148 131-240 (429)
320 3lvg_A Clathrin heavy chain 1; 87.4 0.00017 5.7E-09 78.1 -21.5 143 230-378 175-325 (624)
321 2gj4_A Glycogen phosphorylase, 87.0 3.8 0.00013 48.2 12.5 112 681-795 549-685 (824)
322 3lpz_A GET4 (YOR164C homolog); 86.8 33 0.0011 35.8 28.3 41 306-346 119-159 (336)
323 2jzc_A UDP-N-acetylglucosamine 85.0 0.65 2.2E-05 46.0 4.1 65 743-813 115-183 (224)
324 2wpv_A GET4, UPF0363 protein Y 80.0 59 0.002 33.6 22.8 82 321-420 132-217 (312)
325 3lvg_A Clathrin heavy chain 1; 79.8 0.002 6.8E-08 69.9 -17.2 205 46-273 52-277 (624)
326 3lpz_A GET4 (YOR164C homolog); 77.1 74 0.0025 33.1 29.7 27 222-248 133-159 (336)
327 2wpv_A GET4, UPF0363 protein Y 70.3 1E+02 0.0035 31.7 26.0 47 47-107 12-58 (312)
328 2c4m_A Glycogen phosphorylase; 69.7 27 0.00093 40.9 12.1 110 682-793 516-649 (796)
329 1l5w_A Maltodextrin phosphoryl 67.6 34 0.0012 40.1 12.3 106 682-789 526-654 (796)
330 2f62_A Nucleoside 2-deoxyribos 62.4 44 0.0015 30.8 9.8 66 725-794 27-107 (161)
331 4gq2_M Nucleoporin NUP120; bet 60.8 52 0.0018 40.2 13.1 114 329-460 816-933 (950)
332 3uzd_A 14-3-3 protein gamma; s 60.8 1.3E+02 0.0046 29.6 14.1 60 47-106 3-64 (248)
333 1o9d_A 14-3-3-like protein C; 60.0 1.4E+02 0.0049 29.7 14.7 60 47-106 7-70 (260)
334 2l2q_A PTS system, cellobiose- 58.0 17 0.00058 31.0 5.8 77 712-793 5-84 (109)
335 3nbm_A PTS system, lactose-spe 55.9 5.7 0.00019 34.0 2.3 82 711-797 6-90 (108)
336 4gq2_M Nucleoporin NUP120; bet 53.2 1.3E+02 0.0045 36.6 14.9 110 88-220 816-926 (950)
337 3goe_A DNA repair protein RAD6 52.6 13 0.00044 29.2 3.6 56 709-768 19-82 (82)
338 2qx5_A Nucleoporin NIC96; mRNA 49.4 2E+02 0.0068 33.1 14.6 31 427-458 538-570 (661)
339 1wy6_A Hypothetical protein ST 48.2 1.5E+02 0.0051 26.4 12.0 97 50-146 9-155 (172)
340 2pln_A HP1043, response regula 47.6 1.3E+02 0.0045 25.7 10.6 105 710-827 17-129 (137)
341 3mm4_A Histidine kinase homolo 46.9 95 0.0032 29.5 10.1 110 711-829 61-194 (206)
342 2ijq_A Hypothetical protein; s 45.6 99 0.0034 28.3 9.0 64 47-110 31-103 (161)
343 2br9_A 14-3-3E, 14-3-3 protein 45.4 2.3E+02 0.0078 27.7 16.0 170 49-219 6-201 (234)
344 2npm_A 14-3-3 domain containin 43.8 2.6E+02 0.0088 27.8 15.1 171 49-219 29-226 (260)
345 2qx5_A Nucleoporin NIC96; mRNA 42.2 4.5E+02 0.015 30.2 16.8 20 122-141 300-319 (661)
346 3t5v_B Nuclear mRNA export pro 42.1 34 0.0012 37.5 6.4 32 426-457 221-253 (455)
347 3ubw_A 14-3-3E, 14-3-3 protein 42.1 2.7E+02 0.0093 27.6 17.9 60 47-106 30-91 (261)
348 3esl_A Checkpoint serine/threo 40.6 2.5E+02 0.0084 26.7 13.5 79 178-257 58-147 (202)
349 4erh_A Outer membrane protein 40.3 27 0.00094 31.6 4.6 75 675-749 10-103 (148)
350 1wy6_A Hypothetical protein ST 40.3 2E+02 0.0068 25.6 14.1 82 170-255 74-155 (172)
351 2ijq_A Hypothetical protein; s 39.6 1.5E+02 0.0053 27.0 9.3 67 120-186 36-104 (161)
352 1e2b_A Enzyme IIB-cellobiose; 37.8 28 0.00095 29.5 3.9 78 714-796 6-84 (106)
353 3en0_A Cyanophycinase; serine 37.0 99 0.0034 31.6 8.6 94 676-777 22-121 (291)
354 3t5v_B Nuclear mRNA export pro 36.2 2E+02 0.0068 31.4 11.3 62 197-258 182-254 (455)
355 3j20_B 30S ribosomal protein S 36.1 47 0.0016 31.8 5.5 84 706-793 59-142 (202)
356 1g60_A Adenine-specific methyl 35.9 16 0.00054 37.0 2.4 30 761-791 211-240 (260)
357 3o1i_D Periplasmic protein TOR 35.8 1.4E+02 0.0048 30.0 10.0 92 508-621 3-94 (304)
358 1ygp_A Yeast glycogen phosphor 35.7 1.3E+02 0.0046 35.4 10.1 98 692-793 612-742 (879)
359 3h1g_A Chemotaxis protein CHEY 35.0 2E+02 0.007 24.2 10.0 104 713-826 7-122 (129)
360 2cwy_A Hypothetical protein TT 34.7 1.6E+02 0.0056 24.1 7.9 63 121-186 6-68 (94)
361 2cfu_A SDSA1; SDS-hydrolase, l 33.3 63 0.0022 37.5 7.2 48 49-96 450-497 (658)
362 1hym_A CMTI-V, hydrolyzed cucu 33.3 23 0.0008 24.6 2.1 27 568-594 8-34 (45)
363 3ax2_A Mitochondrial import re 33.2 1E+02 0.0034 24.0 5.9 28 53-80 22-49 (73)
364 3ax2_A Mitochondrial import re 32.7 69 0.0024 24.9 4.9 30 161-190 21-50 (73)
365 1tvm_A PTS system, galactitol- 32.6 74 0.0025 27.1 5.8 66 713-790 23-90 (113)
366 2vkj_A TM1634; membrane protei 32.3 1.4E+02 0.0049 23.9 6.6 31 47-77 52-82 (106)
367 2hqs_H Peptidoglycan-associate 32.2 1E+02 0.0034 26.5 6.7 74 697-770 23-113 (118)
368 3mv2_A Coatomer subunit alpha; 31.7 4.4E+02 0.015 27.1 14.7 31 48-78 114-144 (325)
369 4grd_A N5-CAIR mutase, phospho 31.4 3.1E+02 0.011 25.2 12.4 135 713-849 14-167 (173)
370 3heb_A Response regulator rece 31.0 2.6E+02 0.009 24.3 10.5 95 713-816 6-118 (152)
371 1om2_A Protein (mitochondrial 31.0 1.1E+02 0.0038 25.1 6.2 30 160-189 23-52 (95)
372 3iqu_A 14-3-3 protein sigma; s 30.6 3.9E+02 0.013 26.1 17.3 61 47-107 7-69 (236)
373 3td3_A Outer membrane protein 30.0 92 0.0031 26.9 6.1 53 697-749 31-94 (123)
374 2aiz_P Outer membrane protein 29.7 81 0.0028 27.9 5.7 59 691-749 38-109 (134)
375 3lxu_X Tripeptidyl-peptidase 2 29.0 4.4E+02 0.015 33.0 13.6 37 58-94 1117-1153(1354)
376 2kgw_A Outer membrane protein 28.7 76 0.0026 27.8 5.4 67 681-749 24-103 (129)
377 2w2u_A Hypothetical P60 katani 28.2 77 0.0026 25.4 4.7 28 49-76 20-47 (83)
378 1vi6_A 30S ribosomal protein S 28.0 54 0.0018 31.5 4.4 107 683-793 35-146 (208)
379 3to5_A CHEY homolog; alpha(5)b 27.7 3.1E+02 0.01 23.9 10.9 107 711-827 12-129 (134)
380 3t5x_A PCI domain-containing p 27.3 1.5E+02 0.0052 28.2 7.7 34 117-150 15-48 (203)
381 2crb_A Nuclear receptor bindin 27.3 87 0.003 25.5 4.7 26 427-452 17-42 (97)
382 2v6y_A AAA family ATPase, P60 26.6 85 0.0029 25.1 4.8 26 50-75 13-38 (83)
383 3egc_A Putative ribose operon 26.3 1.9E+02 0.0065 28.9 8.9 103 508-637 6-108 (291)
384 1boo_A Protein (N-4 cytosine-s 26.3 26 0.0009 36.6 2.1 31 761-792 251-281 (323)
385 3re2_A Predicted protein; meni 26.2 3E+02 0.01 28.6 9.6 80 326-420 238-325 (472)
386 2crb_A Nuclear receptor bindin 26.2 1.2E+02 0.0042 24.6 5.4 30 154-183 12-41 (97)
387 3ksm_A ABC-type sugar transpor 26.0 1.2E+02 0.0042 29.9 7.3 38 511-548 1-38 (276)
388 3kuu_A Phosphoribosylaminoimid 26.0 3.9E+02 0.013 24.6 11.7 129 719-849 20-167 (174)
389 3l7i_A Teichoic acid biosynthe 25.9 2.3E+02 0.0078 33.2 10.6 119 741-870 597-720 (729)
390 4a5x_A MITD1, MIT domain-conta 25.5 91 0.0031 25.1 4.8 30 47-76 15-44 (86)
391 2i2x_B MTAC, methyltransferase 25.4 2.6E+02 0.009 27.7 9.4 109 723-840 136-253 (258)
392 3u5c_A 40S ribosomal protein S 25.4 72 0.0025 31.6 4.9 67 726-793 82-148 (252)
393 3uzd_A 14-3-3 protein gamma; s 25.0 5E+02 0.017 25.5 15.5 46 374-419 148-202 (248)
394 3rot_A ABC sugar transporter, 24.9 1.5E+02 0.0051 29.9 7.8 40 509-548 2-41 (297)
395 2xzm_B RPS0E; ribosome, transl 24.9 1.1E+02 0.0037 30.2 6.0 67 726-793 78-145 (241)
396 3t5x_A PCI domain-containing p 24.6 1.3E+02 0.0044 28.8 6.6 34 82-115 14-47 (203)
397 2iz6_A Molybdenum cofactor car 24.2 82 0.0028 29.4 4.9 64 762-830 107-173 (176)
398 3gyb_A Transcriptional regulat 24.2 2.1E+02 0.0071 28.3 8.7 68 508-600 3-70 (280)
399 1eg2_A Modification methylase 23.7 35 0.0012 35.6 2.5 29 761-790 241-269 (319)
400 1e5p_A Aphrodisin; lipocalin, 23.5 85 0.0029 28.1 4.9 38 712-749 107-145 (151)
401 2k1s_A Inner membrane lipoprot 23.2 1.1E+02 0.0039 27.4 5.6 58 692-749 43-113 (149)
402 1k68_A Phytochrome response re 23.0 3.4E+02 0.011 22.8 10.7 96 712-816 3-114 (140)
403 3grc_A Sensor protein, kinase; 23.0 2.8E+02 0.0096 23.6 8.4 102 711-822 6-118 (140)
404 2hlv_A Odorant-binding protein 23.0 92 0.0031 28.2 5.1 39 712-750 114-153 (160)
405 3re2_A Predicted protein; meni 22.8 4E+02 0.014 27.7 9.7 65 322-386 254-325 (472)
406 3oon_A Outer membrane protein 22.5 1.3E+02 0.0045 25.8 5.7 53 697-749 34-97 (123)
407 3ldt_A Outer membrane protein, 22.4 1.5E+02 0.0053 27.2 6.4 74 697-770 71-161 (169)
408 1wfd_A Hypothetical protein 15 22.2 93 0.0032 25.5 4.3 30 47-76 14-43 (93)
409 2cwy_A Hypothetical protein TT 21.8 2.1E+02 0.0073 23.3 6.4 57 52-110 5-67 (94)
410 4b4t_O 26S proteasome regulato 21.3 4.8E+02 0.016 27.7 11.1 61 393-453 129-197 (393)
411 1qkk_A DCTD, C4-dicarboxylate 21.2 4.1E+02 0.014 23.0 12.5 136 712-874 4-148 (155)
412 1f8y_A Nucleoside 2-deoxyribos 21.1 1.4E+02 0.0048 27.2 5.7 82 710-794 2-115 (157)
413 3jy6_A Transcriptional regulat 20.9 2.6E+02 0.009 27.5 8.6 102 508-637 5-106 (276)
414 3u84_A Menin; MLL, JUND, ledgf 20.8 4.2E+02 0.014 28.2 9.5 45 376-420 298-347 (550)
415 3cyp_B Chemotaxis protein MOTB 20.7 1.4E+02 0.0047 26.4 5.6 58 692-749 12-88 (138)
416 2rpa_A Katanin P60 ATPase-cont 20.7 73 0.0025 25.2 3.1 30 48-77 12-41 (78)
417 1bj7_A D 2; allergen, lipocali 20.6 96 0.0033 28.0 4.6 38 712-749 112-150 (156)
418 1ou0_A Precorrin-8X methylmuta 20.4 2E+02 0.0069 27.4 6.7 83 698-808 119-202 (207)
419 3sho_A Transcriptional regulat 20.3 4.2E+02 0.014 24.2 9.4 95 693-794 23-123 (187)
420 3ors_A N5-carboxyaminoimidazol 20.2 5E+02 0.017 23.7 11.0 94 719-814 11-110 (163)
421 1s2d_A Purine trans deoxyribos 20.2 1.4E+02 0.0048 27.5 5.6 36 757-792 76-116 (167)
422 3kxe_C Antitoxin protein PARD- 20.1 1.7E+02 0.0059 23.6 5.4 52 815-866 27-81 (88)
423 3iz6_A 40S ribosomal protein S 20.0 1.1E+02 0.0036 31.1 4.9 67 726-793 87-153 (305)
No 1
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=100.00 E-value=1.1e-117 Score=1064.50 Aligned_cols=588 Identities=28% Similarity=0.417 Sum_probs=517.6
Q ss_pred hCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002273 254 VSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAY 333 (944)
Q Consensus 254 ~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 333 (944)
..|++..++.++|.++... |++++|+..|+++++.+|++..++.++|.+|
T Consensus 4 s~P~~a~al~nLG~~~~~~------------------------------G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l 53 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQ------------------------------GNIEEAVRLYRKALEVFPEFAAAHSNLASVL 53 (723)
T ss_dssp --CHHHHHHHHHHHHHHHT------------------------------TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHc------------------------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3577888888888876654 5669999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002273 334 GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEM 413 (944)
Q Consensus 334 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 413 (944)
..+|++++|+..|+++++++|+++.+++++|.++..+|++++|+++|+++++++|++..+++++|.+|..+|++++|++.
T Consensus 54 ~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~ 133 (723)
T 4gyw_A 54 QQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIAS 133 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhh----hHHHHhhhccCCChHHHHHHHHHHHH
Q 002273 414 IEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ----NRLLAMNYINEGHDDKLFEAHRDWGK 489 (944)
Q Consensus 414 l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (944)
|+++++++|+++.++.++|.+|..+|++++|.+.|++++++.|+...... .....+.+.. .........+++..
T Consensus 134 ~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~~~~~~l~~~~~~~~l~~~~--~~~~~~aia~r~~~ 211 (723)
T 4gyw_A 134 YRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPL--SHGFRKAIAERHGN 211 (723)
T ss_dssp HHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHHTTCCCSSCTTGGGGSCC--CHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhHHhhccCcccchhhhhhhhc--CHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999886543211 0001111111 11111111222222
Q ss_pred HHhh----h-ccCCCCCCCCCCCCCCcEEEeecCCCccCcHHHHHHhhhhhccCCcEEEEEEecccc-CChhhHHHHHHH
Q 002273 490 RFMR----L-YSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVK-ADAKTIRFREKV 563 (944)
Q Consensus 490 ~~~~----~-~~~~~~~~~~~~~~~~lriGy~S~d~~~h~v~~~~~~~l~~~d~~~fev~~y~~~~~-~d~~t~~~~~~~ 563 (944)
.... . .++...+...+.+++||||||+|+||++|||++|+.+++++||+++|||++|+.++. .|..+.+++.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~klrIGyvS~df~~H~v~~~~~~~~~~~d~~~fei~~y~~~~~~~~~~~~~~~~-- 289 (723)
T 4gyw_A 212 LCLDKINVLHKPPYEHPKDLKLSDGRLRVGYVSSDFGNHPTSHLMQSIPGMHNPDKFEVFCYALSPDDGTNFRVKVMA-- 289 (723)
T ss_dssp HHHHHHHTTTCCCCCCCCSSTTTTTCEEEEEEESCSSSSHHHHHHTTHHHHSCTTTEEEEEEESSCCCSCHHHHHHHH--
T ss_pred hhhhhhhcccCccccCccccccccccceeeeechhhccCcHHHHHHHHHHHhccCceeEEEEEcCCCCccHHHHHHHH--
Confidence 2211 1 112222334455688999999999999999999999999999999999999998754 3445555444
Q ss_pred hhhCCceEeccCC-CHHHHHHHhHhCCccEEEecCCCCCCCchhhhccCCcceeeecccCCCCCCCCCccEEEecCCCCC
Q 002273 564 MKKGGIWRDIYGI-DEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADP 642 (944)
Q Consensus 564 ~~~~~~~~~~~~~-~~~~~a~~i~~d~idilvdl~g~t~~~~~~~~a~r~ApvQ~~~~G~p~t~g~~~~Dy~i~d~~~~p 642 (944)
.+++|+++.++ +|.+++++|++|+|||||||+|||.++|+.||++|||||||+|||||+|||+++|||+|+|.+++|
T Consensus 290 --~~~~~~~~~~~~~d~~~a~~i~~d~iDIlidl~g~t~~~r~~i~a~r~APvQv~~lG~p~TtG~~~iDY~i~D~~~~P 367 (723)
T 4gyw_A 290 --EANHFIDLSQIPCNGKAADRIHQDGIHILVNMNGYTKGARNELFALRPAPIQAMWLGYPGTSGALFMDYIITDQETSP 367 (723)
T ss_dssp --HSSEEEEGGGCCCHHHHHHHHHHTTCSEEEESCSSBTTCCTHHHHTCCSSEEEECSSCSSCCCCTTCCEEEECTTTSC
T ss_pred --hhccccccccCCcHHHHHHHHHhccceeEEeccCCCCCCcchhhhcCCCCceeeeccCCCCCCCCcCCEEEeCCCCCC
Confidence 45899999998 689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccceEEcCCCccccCCCCCCC----------------------------------------------------
Q 002273 643 PETKQKHVEELIRLPECFLCYTPSPEAG---------------------------------------------------- 670 (944)
Q Consensus 643 ~~~~~~~~e~~~~lp~~~~~~~~~~~~~---------------------------------------------------- 670 (944)
++.+.+|||||+|||++|+|++|+...|
T Consensus 368 ~~~~~~ysEklirLP~~~~~~d~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 447 (723)
T 4gyw_A 368 AEVAEQYSEKLAYMPHTFFIGDHANMFPHLKKKAVIDFKSNGHIYDNRIVLNGIDLKAFLDSLPDVKIVKMKCPDGGDNA 447 (723)
T ss_dssp GGGGGGCSSEEEECSSCSCCCCHHHHCGGGSSCEEECCC---CCCSSSEEEECTTHHHHHHTSSSCEEEC----------
T ss_pred chhhhcceeeeeeCCCccccCCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999986421100
Q ss_pred ----------------------------------------------------------------CCCCCCCCCCCCeEEE
Q 002273 671 ----------------------------------------------------------------PVCPTPALTNGFITFG 686 (944)
Q Consensus 671 ----------------------------------------------------------------~~~~~~~~~~~~~~f~ 686 (944)
+.+..++|++|.||||
T Consensus 448 ~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~R~~~gLp~~~v~f~ 527 (723)
T 4gyw_A 448 DSSNTALNMPVIPMNTIAEAVIEMINRGQIQITINGFSISNGLATTQINNKAATGEEVPRTIIVTTRSQYGLPEDAIVYC 527 (723)
T ss_dssp -------CEEEECSSHHHHHHHHHHHHTCCEEEETTEEEEETTCHHHHCHHHHHTSSCCCSEEEEEGGGGTCCTTSEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhcCCCCCCEEEE
Confidence 0123457999999999
Q ss_pred ecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEE
Q 002273 687 SFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDIS 766 (944)
Q Consensus 687 ~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~ 766 (944)
|||+++||+|+++++|++||++||||+|||+..+. ..+.++++.++++||+++||+|.+..+ ..+|+++|+.+||+
T Consensus 528 ~fN~~~Ki~p~~~~~W~~IL~~vP~S~L~Ll~~~~---~~~~~l~~~~~~~gi~~~r~~f~~~~~-~~~~l~~~~~~Di~ 603 (723)
T 4gyw_A 528 NFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPA---VGEPNIQQYAQNMGLPQNRIIFSPVAP-KEEHVRRGQLADVC 603 (723)
T ss_dssp CCSCGGGCCHHHHHHHHHHHHHCSSEEEEEEETTG---GGHHHHHHHHHHTTCCGGGEEEEECCC-HHHHHHHGGGCSEE
T ss_pred eCCccccCCHHHHHHHHHHHHhCCCCeEEEEeCcH---HHHHHHHHHHHhcCCCcCeEEECCCCC-HHHHHHHhCCCeEE
Confidence 99999999999999999999999999999987553 457889999999999999999999987 79999999999999
Q ss_pred ecCCCCCCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Q 002273 767 LDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLM 846 (944)
Q Consensus 767 Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~ 846 (944)
||||||||||||+|||||||||||++|++|+||||+|||+++||+||||.|+++||++|++|++|++.|+++|++||+++
T Consensus 604 LDt~p~~g~tT~~eal~~GvPvvt~~g~~~~sR~~~s~l~~~gl~e~ia~~~~~Y~~~a~~la~d~~~l~~lr~~l~~~~ 683 (723)
T 4gyw_A 604 LDTPLCNGHTTGMDVLWAGTPMVTMPGETLASRVAASQLTCLGCLELIAKNRQEYEDIAVKLGTDLEYLKKVRGKVWKQR 683 (723)
T ss_dssp ECCSSSCCSHHHHHHHHTTCCEEBCCCSSGGGTHHHHHHHHHTCGGGBCSSHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred eCCCCcCCHHHHHHHHHcCCCEEEccCCCccHhHHHHHHHHcCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCChHHHHHHHHHHHHHHHHHHhcCCCCCch
Q 002273 847 SKSPVCDGQNFALGLESTYRNMWHRYCKGDVPSLK 881 (944)
Q Consensus 847 ~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 881 (944)
.+|||||.++|+++||++|++||+|||+|++|.+.
T Consensus 684 ~~s~l~d~~~~~~~le~a~~~~w~r~~~G~~p~~~ 718 (723)
T 4gyw_A 684 ISSPLFNTKQYTMELERLYLQMWEHYAAGNKPDHM 718 (723)
T ss_dssp HHSSTTCHHHHHHHHHHHHHHHHHHHHTTCCCCCB
T ss_pred HhCcCcCHHHHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 99999999999999999999999999999999875
No 2
>3q3e_A HMW1C-like glycosyltransferase; N-glycosylation; 2.10A {Actinobacillus pleuropneumoniae serovaorganism_taxid} PDB: 3q3h_A* 3q3i_A
Probab=100.00 E-value=1.3e-82 Score=717.51 Aligned_cols=396 Identities=15% Similarity=0.166 Sum_probs=334.9
Q ss_pred hhHHHHhhhccCCChHHHHHHHHHHHHHHh-hh--ccCCCCCCCCCCCCCCcEEEeecCCCccCcHHHHHHhhhhhccCC
Q 002273 463 QNRLLAMNYINEGHDDKLFEAHRDWGKRFM-RL--YSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQ 539 (944)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~lriGy~S~d~~~h~v~~~~~~~l~~~d~~ 539 (944)
.+-.+..+|...-+.-+.-....++..+.. .. ....+....++.++++++|||+|.+|++|||+.++.+++.+ ||+
T Consensus 225 ~~~ym~csy~~~~~kh~iK~~~n~~~~~~l~~~~g~~~~~~~~~~~~~~K~l~ig~ls~f~~~HsV~r~~~~~l~~-dR~ 303 (631)
T 3q3e_A 225 HDVYMHCSYDTSVNKHDVKRALNHVIRRHIESEYGWKDRDVAHIGYRNNKPVMVVLLEHFHSAHSIYRTHSTSMIA-ARE 303 (631)
T ss_dssp HHHHHHGGGSCSTTTTHHHHHHHHHHHHHHHHHSCCCCCCCSSCCEETTEEEEEEECSSCCTTSHHHHHHHHHHHH-HTT
T ss_pred cceeeeccCCCCchhHHHHHHHHHHHHHhhHhhcCCcccccCCCCCCCCCeEEEEEeCcccCCCcHHHHHHHHHHh-hhh
Confidence 344555677655544444333333333322 11 11111112233457889999999999999999999999887 999
Q ss_pred cEEEEEEeccccCChhhHHHHHHHhhhCCceEeccCCC----HHHHHHHhHhCCccEEEecCCCCCCCchhhhccCCcce
Q 002273 540 NYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGID----EKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPV 615 (944)
Q Consensus 540 ~fev~~y~~~~~~d~~t~~~~~~~~~~~~~~~~~~~~~----~~~~a~~i~~d~idilvdl~g~t~~~~~~~~a~r~Apv 615 (944)
+|||+||+ +...|+.| | ..+++|+++.+++ +++++++|++|+|||||||+|||.+.++.++++|||||
T Consensus 304 ~FEV~~Ys-~~~~D~~t---r----~~~d~f~~l~~~s~~~~~~~ia~~Ir~d~IDILVdL~g~t~~~~i~~aa~RpAPV 375 (631)
T 3q3e_A 304 HFYLIGLG-SPSVDQAG---Q----EVFDEFHLVAGDNMKQKLEFIRSVCESNGAAIFYMPSIGMDMTTIFASNTRLAPI 375 (631)
T ss_dssp TSEEEEEE-CTTSCHHH---H----TTSSEEEECCCSSHHHHHHHHHHHHHHHTCSEEEESCCSSSHHHHHHTTSCCSSE
T ss_pred cEEEEEEe-CCCCCHHH---H----hcCcEEEECCCCCccccHHHHHHHHHhcCCCEEEECCCCCCchhHHHHhCCCchh
Confidence 99999999 77778766 2 2358999999999 78999999999999999999999777777777999999
Q ss_pred eeecccCCCCCCCCCccEEEecCCCCCcccccccccceEEcCCCccccCCCCCCCCCCCCCCCC-CCCeEEEecCCCCcC
Q 002273 616 QVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAGPVCPTPALT-NGFITFGSFNNLAKI 694 (944)
Q Consensus 616 Q~~~~G~p~t~g~~~~Dy~i~d~~~~p~~~~~~~~e~~~~lp~~~~~~~~~~~~~~~~~~~~~~-~~~~~f~~~~~~~K~ 694 (944)
||+|||||+|||+++|||+|+|+.+.| .+.+|+|+|+|||++++||+|+...|.+.+.+... +|+|||||||+++|+
T Consensus 376 Qvs~lGyp~TTGl~~iDY~i~D~~~~~--~~~~ysEklirLP~~~~~~~p~~~~p~r~~~~lp~~~G~v~Fg~fn~~~Ki 453 (631)
T 3q3e_A 376 QAIALGHPATTHSDFIEYVIVEDDYVG--SEECFSETLLRLPKDALPYVPSALAPEKVDYLLRENPEVVNIGIASTTMKL 453 (631)
T ss_dssp EEEECSSCSCCCCTTCCEEEEEGGGCC--CGGGCSSEEEEECTTSSCCCCCTTCCSSCCCCCCSCCSEEEEEEEECSTTC
T ss_pred eEeccCCCcccCcccCCEEEeCCCCCC--cccCceeeEEECCCCccccCCcccCCccccccCCcCCCeEEEEECCccccC
Confidence 999999999999999999999997765 58899999999999999999988766554444344 479999999999999
Q ss_pred CHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCCCC
Q 002273 695 TPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAG 774 (944)
Q Consensus 695 ~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~~ 774 (944)
+|+++++|++||+++|+++||++..+. .+....++.+++.++||+ +||+|.|.++ ..+|+++|+.+||+||||||+|
T Consensus 454 ~p~~l~~WarIL~~vP~s~L~l~~~g~-~~g~~~~~~~~~~~~GI~-~Rv~F~g~~p-~~e~la~y~~aDIfLDpfpy~G 530 (631)
T 3q3e_A 454 NPYFLEALKAIRDRAKVKVHFHFALGQ-SNGITHPYVERFIKSYLG-DSATAHPHSP-YHQYLRILHNCDMMVNPFPFGN 530 (631)
T ss_dssp CHHHHHHHHHHHHHCSSEEEEEEEESS-CCGGGHHHHHHHHHHHHG-GGEEEECCCC-HHHHHHHHHTCSEEECCSSSCC
T ss_pred CHHHHHHHHHHHHhCCCcEEEEEecCC-CchhhHHHHHHHHHcCCC-ccEEEcCCCC-HHHHHHHHhcCcEEEeCCcccC
Confidence 999999999999999999998642111 123445566678889997 8999999988 7999999999999999999999
Q ss_pred cccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCccc-ccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCC
Q 002273 775 TTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHL-IAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCD 853 (944)
Q Consensus 775 ~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~-v~~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~ 853 (944)
|||++|||||||||||++|+++++|+|+|+|+++|++|| |+.|+++|+++|++|++|++.|+++|+++|+++.++|+||
T Consensus 531 gtTtlEALwmGVPVVTl~G~~~asRvgaSlL~~~GLpE~LIA~d~eeYv~~Av~La~D~~~l~~LR~~Lr~~~~~spLFd 610 (631)
T 3q3e_A 531 TNGIIDMVTLGLVGVCKTGAEVHEHIDEGLFKRLGLPEWLIANTVDEYVERAVRLAENHQERLELRRYIIENNGLNTLFT 610 (631)
T ss_dssp SHHHHHHHHTTCCEEEECCSSHHHHHHHHHHHHTTCCGGGEESSHHHHHHHHHHHHHCHHHHHHHHHHHHHSCCHHHHTC
T ss_pred ChHHHHHHHcCCCEEeccCCcHHHHhHHHHHHhcCCCcceecCCHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhCCCcc
Confidence 999999999999999999999999999999999999995 9999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhc
Q 002273 854 GQNFALGLESTYRNMWHRYCK 874 (944)
Q Consensus 854 ~~~~~~~~e~~~~~~~~~~~~ 874 (944)
++++.+|+.|+++|++|..
T Consensus 611 --~~~~~~e~~ye~~~~~w~~ 629 (631)
T 3q3e_A 611 --GDPRPMGQVFLEKLNAFLK 629 (631)
T ss_dssp --SCCTHHHHHHHHHHHHHHH
T ss_pred --hhHHHHHHHHHHHHHHHHh
Confidence 8999999999999999986
No 3
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=100.00 E-value=5.2e-64 Score=596.99 Aligned_cols=552 Identities=21% Similarity=0.255 Sum_probs=471.5
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q 002273 302 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 381 (944)
Q Consensus 302 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 381 (944)
.|++++|+..|+++++.+|++..++..+|.++...|++++|++.|+++++.+|++..++..+|.++...|++++|+++|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCCC
Q 002273 382 MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA---GSISLAIDAYEQCLKIDPDS 458 (944)
Q Consensus 382 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~---g~~~eA~~~~~~al~l~P~~ 458 (944)
++++.+|++..++.++|.++...|++++|++.|+++++.+|++..++.++|.++... |++++|.+.|+++++.+|++
T Consensus 82 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 82 QASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence 999999999999999999999999999999999999999999999999999999999 99999999999999999998
Q ss_pred hhhhhhHHHHhhhccCCChHHHHHHHHHHHHHH-hhhccCCCCCCCCCCCCCCcEEEeecCCCccCcHHHHHHhhhhh--
Q 002273 459 RNAGQNRLLAMNYINEGHDDKLFEAHRDWGKRF-MRLYSQYTSWDNTKDPERPLVIGYVSPDYFTHSVSYFIEAPLVY-- 535 (944)
Q Consensus 459 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~lriGy~S~d~~~h~v~~~~~~~l~~-- 535 (944)
...+..+. ..+........+.|..+. .....+. ...+..+++++||||++++|..|++..++..++.+
T Consensus 162 ~~~~~~l~-------~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~rI~~~~~~~~~~g~~~~~~~l~~~L~ 232 (568)
T 2vsy_A 162 VEPFAFLS-------EDASAAEQLACARTRAQAIAASVRPL--APTRVRSKGPLRVGFVSNGFGAHPTGLLTVALFEALQ 232 (568)
T ss_dssp SCHHHHTT-------SCCCHHHHHHHHHHHHHHHHTTCCCC--CCCCCCSSSCEEEEEEESCSSSSHHHHHHHHHHHHHH
T ss_pred cChHHHhC-------CCCHHHHHHHHHHHHHhccCcccCCC--CCCCCCCCCCeEEEEECcccccChHHHHHHHHHhhcc
Confidence 77654321 333444444444554433 2221211 12333457899999999999999999999999999
Q ss_pred ccCCcEEEEEEecccc-CChhhHHHHHHHhhhCCceEeccCCCHHHHHHHhHhCCccEEEecCCCCCCCchhhhccCCcc
Q 002273 536 HDYQNYKVVVYSAVVK-ADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAP 614 (944)
Q Consensus 536 ~d~~~fev~~y~~~~~-~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~d~idilvdl~g~t~~~~~~~~a~r~Ap 614 (944)
+++.+|||++|+..+. .+..+.+++. .. .|+++.+++..++++.|+++++||+++.+|||.++++.+++.|++|
T Consensus 233 ~~~~~~~v~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~l~~~i~~~~~Div~~~~~~~~~~~~~~~~~~~~~ 307 (568)
T 2vsy_A 233 RRQPDLQMHLFATSGDDGSTLRTRLAQ----AS-TLHDVTALGHLATAKHIRHHGIDLLFDLRGWGGGGRPEVFALRPAP 307 (568)
T ss_dssp HHCTTEEEEEEESSCCCSCHHHHHHHH----TS-EEEECTTCCHHHHHHHHHHTTCSEEEECSSCTTCSSCHHHHTCCSS
T ss_pred CCcccEEEEEEECCCCCccHHHHHHHh----cC-eEEECCCCCHHHHHHHHHhCCCCEEEECCCCCCcchHHHHhcCCCc
Confidence 9999999999998643 3455555443 23 6888888889999999999999999999999999999999999999
Q ss_pred eeeecccCCCCCCCCCccEEEecCCCCCcccccccccceEEcCCCccccCCCCCCC-----CCCCCCCCCCCCeEEEecC
Q 002273 615 VQVTWIGYPNTTGLPTIDYRITDSLADPPETKQKHVEELIRLPECFLCYTPSPEAG-----PVCPTPALTNGFITFGSFN 689 (944)
Q Consensus 615 vQ~~~~G~p~t~g~~~~Dy~i~d~~~~p~~~~~~~~e~~~~lp~~~~~~~~~~~~~-----~~~~~~~~~~~~~~f~~~~ 689 (944)
+|++|+|||.|+|++.+||+++|.++.|.+....|.|++..+|+ +|.|.+..+ +.+...+++++.++|++.+
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~~~~~~i~~ipn---~~~~~~~~~~~~~~~~r~~~~~~~~~~v~~~g~ 384 (568)
T 2vsy_A 308 VQVNWLAYPGTSGAPWMDYVLGDAFALPPALEPFYSEHVLRLQG---AFQPSDTSRVVAEPPSRTQCGLPEQGVVLCCFN 384 (568)
T ss_dssp EEEEESSSSSCCCCTTCCEEEECTTTSCTTTGGGCSSEEEECSS---CSCCCCTTCCCCCCCCTGGGTCCTTSCEEEECC
T ss_pred eeEeeecCCcccCCCCceEEEECCCcCCcccccCCcceeEcCCC---cCCCCCCCCCCCCCCCccccCCCCCCEEEEeCC
Confidence 99999999999999999999999999998888889999999998 455543222 2233345778888888888
Q ss_pred CCCcCCHHHHHHHHHHHhHcCCceEEEec-CCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEec
Q 002273 690 NLAKITPKVLQVWARILCAVPNSRLVVKC-KPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLD 768 (944)
Q Consensus 690 ~~~K~~~~~~~~~~~il~~~p~~~l~~~~-~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld 768 (944)
...|..+.++++|.+|++..|+.+|+|+| .+ ..++.+++.++++|++++||+|+|.++ ..++...|+.+||+|+
T Consensus 385 ~~~K~~~~li~a~~~l~~~~~~~~l~i~G~~g----~~~~~l~~~~~~~~l~~~~v~~~g~~~-~~~~~~~~~~adv~v~ 459 (568)
T 2vsy_A 385 NSYKLNPQSMARMLAVLREVPDSVLWLLSGPG----EADARLRAFAHAQGVDAQRLVFMPKLP-HPQYLARYRHADLFLD 459 (568)
T ss_dssp CGGGCCHHHHHHHHHHHHHCTTCEEEEECCST----THHHHHHHHHHHTTCCGGGEEEECCCC-HHHHHHHGGGCSEEEC
T ss_pred ccccCCHHHHHHHHHHHHhCCCcEEEEecCCH----HHHHHHHHHHHHcCCChhHEEeeCCCC-HHHHHHHHhcCCEEee
Confidence 66799999999999999999999999998 44 578899999999999669999999987 5789999999999999
Q ss_pred CCCCCCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Q 002273 769 TFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSK 848 (944)
Q Consensus 769 ~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~ 848 (944)
|+++++|+|++|||+||+|||+++|..+.+++|++++..+|++|+|.+|+++|++.+.+|++|++.+.++++..|+++..
T Consensus 460 ps~~~~g~~~lEAma~G~Pvv~~~g~~~~s~~~~~~l~~~g~~e~v~~~~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~ 539 (568)
T 2vsy_A 460 THPYNAHTTASDALWTGCPVLTTPGETFAARVAGSLNHHLGLDEMNVADDAAFVAKAVALASDPAALTALHARVDVLRRA 539 (568)
T ss_dssp CSSSCCSHHHHHHHHTTCCEEBCCCSSGGGSHHHHHHHHHTCGGGBCSSHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHhCCCCEEeccCCCchHHHHHHHHHHCCChhhhcCCHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhc
Confidence 99998899999999999999999999999999999999999999999999999999999999999999999999998755
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHHhcC
Q 002273 849 SPVCDGQNFALGLESTYRNMWHRYCKG 875 (944)
Q Consensus 849 ~~~~~~~~~~~~~e~~~~~~~~~~~~~ 875 (944)
...|+++.+++.++++|+++|++||..
T Consensus 540 ~~~f~~~~~~~~~~~~y~~~~~~~~~~ 566 (568)
T 2vsy_A 540 SGVFHMDGFADDFGALLQALARRHGWL 566 (568)
T ss_dssp SSTTCHHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 678999999999999999999999973
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.3e-40 Score=375.78 Aligned_cols=380 Identities=27% Similarity=0.376 Sum_probs=365.8
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q 002273 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGR 131 (944)
Q Consensus 52 ~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 131 (944)
+.+|..++..|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|.++.++..+|.++...|+
T Consensus 3 ~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp CTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC
Confidence 35788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002273 132 LVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTAL 211 (944)
Q Consensus 132 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 211 (944)
+++|+..|+++++.+|++... +..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~-------~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 155 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDG-------YINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAK 155 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHH-------HHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHH
Confidence 999999999999999998765 7788888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCC
Q 002273 212 GCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNF 291 (944)
Q Consensus 212 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~ 291 (944)
+.|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++..++..++.++...
T Consensus 156 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~------------------- 216 (388)
T 1w3b_A 156 ACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEA------------------- 216 (388)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT-------------------
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc-------------------
Confidence 9999999999999999999999999999999999999999999999999999888877654
Q ss_pred CchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC
Q 002273 292 QSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD 371 (944)
Q Consensus 292 ~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 371 (944)
|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|
T Consensus 217 -----------~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 285 (388)
T 1w3b_A 217 -----------RIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKG 285 (388)
T ss_dssp -----------TCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHS
T ss_pred -----------CCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Confidence 455999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002273 372 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 451 (944)
Q Consensus 372 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~a 451 (944)
++++|++.|+++++..|++..++..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..|+++
T Consensus 286 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 365 (388)
T 1w3b_A 286 SVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEA 365 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCChhhhhhHHHH
Q 002273 452 LKIDPDSRNAGQNRLLA 468 (944)
Q Consensus 452 l~l~P~~~~a~~~~~~~ 468 (944)
++++|++..++.++...
T Consensus 366 ~~~~p~~~~a~~~lg~~ 382 (388)
T 1w3b_A 366 IRISPTFADAYSNMGNT 382 (388)
T ss_dssp HTTCTTCHHHHHHHHHH
T ss_pred HhhCCCCHHHHHhHHHH
Confidence 99999999988876443
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=1.5e-37 Score=350.67 Aligned_cols=360 Identities=26% Similarity=0.383 Sum_probs=346.8
Q ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 002273 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (944)
Q Consensus 44 ~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (944)
.|.+...+..++.++...|++++|+..++++++.+|.++.++..+|.++...|++++|+..|+++++.+|++..++..+|
T Consensus 29 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 108 (388)
T 1w3b_A 29 EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLA 108 (388)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHH
Confidence 45577889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002273 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE 203 (944)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 203 (944)
.++...|++++|+..|+++++.+|+.... +..+|.++...|++++|+..|+++++.+|++..++..+|.++..
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~-------~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 181 (388)
T 1w3b_A 109 AALVAAGDMEGAVQAYVSALQYNPDLYCV-------RSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNA 181 (388)
T ss_dssp HHHHHHSCSSHHHHHHHHHHHHCTTCTHH-------HHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHH-------HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999998765 67788888899999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHH
Q 002273 204 LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLL 283 (944)
Q Consensus 204 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~ 283 (944)
.|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++..+|++...+..++.++...
T Consensus 182 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~----------- 250 (388)
T 1w3b_A 182 QGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQ----------- 250 (388)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-----------
T ss_pred cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHc-----------
Confidence 999999999999999999999999999999999999999999999999999999999999888876654
Q ss_pred HhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 002273 284 FRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNL 363 (944)
Q Consensus 284 ~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 363 (944)
|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|.+..++..+
T Consensus 251 -------------------g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 311 (388)
T 1w3b_A 251 -------------------GLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNL 311 (388)
T ss_dssp -------------------TCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred -------------------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHH
Confidence 5669999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 002273 364 GVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS 440 (944)
Q Consensus 364 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~ 440 (944)
|.++...|++++|+..|+++++..|++..++..+|.++...|++++|+..|+++++++|++..+++++|.++..+|+
T Consensus 312 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 312 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998874
No 6
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.8e-36 Score=348.63 Aligned_cols=387 Identities=17% Similarity=0.119 Sum_probs=357.3
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (944)
.++.++.+|..++..|+|++|+..|+++++.+| ++.++..+|.++...|++++|+..++++++.+|++..++..+|.++
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999 6999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCChhHHhHH--------------------------------------------------
Q 002273 127 KDEGRLVEAAESYHKALSADPSYKPAAECL-------------------------------------------------- 156 (944)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------------------------------------------------- 156 (944)
..+|++++|+..|+++++..|.+.......
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 999999999999999999988543321110
Q ss_pred ----------------------HHHHHHHHHHHHH---cCChHHHHHHHHHHHh-----h--C-------CCCHHHHHHH
Q 002273 157 ----------------------AIVLTDLGTSLKL---AGNTQDGIQKYYEALK-----I--D-------PHYAPAYYNL 197 (944)
Q Consensus 157 ----------------------a~~~~~lg~~~~~---~g~~~~A~~~~~~al~-----~--~-------p~~~~~~~~l 197 (944)
...+..+|..+.. .|++++|+..|+++++ . + |.+..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 4455666776665 8999999999999999 5 3 4456789999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhh
Q 002273 198 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTY 277 (944)
Q Consensus 198 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~ 277 (944)
|.++...|++++|+..++++++..|. ..++..+|.++...|++++|+..+++++...|++...+..++.++...+
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---- 318 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQ---- 318 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTT----
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhC----
Confidence 99999999999999999999999999 9999999999999999999999999999999999998888888776654
Q ss_pred hhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH
Q 002273 278 GRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA 357 (944)
Q Consensus 278 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 357 (944)
++++|+..++++++..|.+..++..+|.++...|++++|+..++++++..|+++
T Consensus 319 --------------------------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 372 (514)
T 2gw1_A 319 --------------------------NYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAP 372 (514)
T ss_dssp --------------------------CTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCS
T ss_pred --------------------------CHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCH
Confidence 559999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHH
Q 002273 358 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ------SLNNLGVVYTV---QGKMDAAAEMIEKAIAANPTYAEAY 428 (944)
Q Consensus 358 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~---~g~~~~A~~~l~~al~~~p~~~~a~ 428 (944)
.++..+|.++...|++++|+.+|+++++..|++.. ++..+|.++.. .|++++|+..++++++.+|++..++
T Consensus 373 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 452 (514)
T 2gw1_A 373 EVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAK 452 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHH
Confidence 99999999999999999999999999999888755 99999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhhH
Q 002273 429 NNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 465 (944)
Q Consensus 429 ~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~ 465 (944)
..+|.++...|++++|+..|+++++++|+++.+...+
T Consensus 453 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 489 (514)
T 2gw1_A 453 IGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAI 489 (514)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHH
Confidence 9999999999999999999999999999998887654
No 7
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5e-34 Score=341.24 Aligned_cols=418 Identities=14% Similarity=0.073 Sum_probs=336.3
Q ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh---------------
Q 002273 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVK--------------- 110 (944)
Q Consensus 46 ~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--------------- 110 (944)
.+...+..++..+.+.|++++|+.+|++++...|++ ..++.++.++...|++++|+..|++++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 160 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCL 160 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCc-hHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHH
Confidence 356677788888888888888888888888777743 5556677777777777777666666522
Q ss_pred ---------------cCCCC-------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHH
Q 002273 111 ---------------LDPQN-------------------ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECL 156 (944)
Q Consensus 111 ---------------~~p~~-------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 156 (944)
..|.. ..+++.+|.+|.+.|++++|+..|+++++.+|++...+..+
T Consensus 161 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 240 (597)
T 2xpi_A 161 VKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQL 240 (597)
T ss_dssp HHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHH
Confidence 23443 67889999999999999999999999999999887765544
Q ss_pred HHH-------------------------------HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 002273 157 AIV-------------------------------LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM 205 (944)
Q Consensus 157 a~~-------------------------------~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 205 (944)
+.+ +..++..+...|++++|++.|+++++. |.+..++..++.+|...|
T Consensus 241 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g 319 (597)
T 2xpi_A 241 VSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRS 319 (597)
T ss_dssp HHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTT
T ss_pred HHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhc
Confidence 321 122244455677788888888887776 667788888888888888
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHh
Q 002273 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFR 285 (944)
Q Consensus 206 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~ 285 (944)
++++|++.|+++++.+|.+..++..++.++...|++++|+..++++++..|++...+..++.++...|+...+.......
T Consensus 320 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 399 (597)
T 2xpi_A 320 RFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKS 399 (597)
T ss_dssp CHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888877765554443332
Q ss_pred hc-CCC---CCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH
Q 002273 286 LN-GSN---FQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 361 (944)
Q Consensus 286 ~~-~~~---~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 361 (944)
.. .+. ....++..+...|++++|++.|+++++..|.+..++..++.+|...|++++|++.|+++++..|.++.++.
T Consensus 400 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 479 (597)
T 2xpi_A 400 STMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLN 479 (597)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 11 111 12245566777888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhh------CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002273 362 NLGVIYKDRDNLDKAVECYQMALSI------KPNF-SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 434 (944)
Q Consensus 362 ~la~~~~~~g~~~~A~~~~~~al~~------~p~~-~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~ 434 (944)
.+|.++...|++++|++.|+++++. +|+. ..++..+|.++...|++++|++.++++++.+|+++.++..+|.+
T Consensus 480 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~ 559 (597)
T 2xpi_A 480 ELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALV 559 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 9999999999999999999999988 5654 78999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCChhhhhhH
Q 002273 435 YRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 465 (944)
Q Consensus 435 ~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~ 465 (944)
|...|++++|+++|+++++++|++..++..+
T Consensus 560 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 590 (597)
T 2xpi_A 560 YLHKKIPGLAITHLHESLAISPNEIMASDLL 590 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 9999999999999999999999998877653
No 8
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=1.1e-34 Score=341.84 Aligned_cols=386 Identities=16% Similarity=0.159 Sum_probs=339.0
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (944)
.++.++.+|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCChhHHhH---------------------------------------------------
Q 002273 127 KDEGRLVEAAESYHKALSADPSYKPAAEC--------------------------------------------------- 155 (944)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~--------------------------------------------------- 155 (944)
...|++++|+..|+ ++...|+.......
T Consensus 104 ~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSS 182 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHT
T ss_pred HHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHH
Confidence 99999999999995 77777764432100
Q ss_pred -------------HHHHHHHH-----HHHHHHcCChHHHHHHHHHHHhhCCCCHH-------HHHHHHHHHHHcCCHHHH
Q 002273 156 -------------LAIVLTDL-----GTSLKLAGNTQDGIQKYYEALKIDPHYAP-------AYYNLGVVYSELMQYDTA 210 (944)
Q Consensus 156 -------------la~~~~~l-----g~~~~~~g~~~~A~~~~~~al~~~p~~~~-------~~~~la~~~~~~g~~~~A 210 (944)
+...+..+ +......+++++|+..|+++++.+|++.. ++..+|.++...|++++|
T Consensus 183 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 262 (537)
T 3fp2_A 183 VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDA 262 (537)
T ss_dssp SCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHH
Confidence 01111111 33334456899999999999999999855 577888999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCC
Q 002273 211 LGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSN 290 (944)
Q Consensus 211 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~ 290 (944)
+..|+++++.+|. ..++..+|.++...|++++|+..|+++++.+|++..++..++.++...
T Consensus 263 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------------ 323 (537)
T 3fp2_A 263 QVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFIL------------------ 323 (537)
T ss_dssp HHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT------------------
T ss_pred HHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhc------------------
Confidence 9999999999999 999999999999999999999999999999999999998888887654
Q ss_pred CCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC
Q 002273 291 FQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR 370 (944)
Q Consensus 291 ~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 370 (944)
|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++.+|+++.++..+|.++...
T Consensus 324 ------------~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 391 (537)
T 3fp2_A 324 ------------QDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDR 391 (537)
T ss_dssp ------------TCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHT
T ss_pred ------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Confidence 56699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002273 371 DNLDKAVECYQMALSIKPNFSQ------SLNNLGVVYTVQ----------GKMDAAAEMIEKAIAANPTYAEAYNNLGVL 434 (944)
Q Consensus 371 g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~----------g~~~~A~~~l~~al~~~p~~~~a~~~la~~ 434 (944)
|++++|+..|+++++..|++.. .+..+|.++... |++++|+.+|+++++.+|++..++..+|.+
T Consensus 392 g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 471 (537)
T 3fp2_A 392 GDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQL 471 (537)
T ss_dssp TCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999999998776543 467778999999 999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCChhhhhh
Q 002273 435 YRDAGSISLAIDAYEQCLKIDPDSRNAGQN 464 (944)
Q Consensus 435 ~~~~g~~~eA~~~~~~al~l~P~~~~a~~~ 464 (944)
|...|++++|+++|+++++++|++......
T Consensus 472 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 501 (537)
T 3fp2_A 472 KLQMEKIDEAIELFEDSAILARTMDEKLQA 501 (537)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--CHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 999999999999999999999998876543
No 9
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.4e-33 Score=337.37 Aligned_cols=402 Identities=16% Similarity=0.050 Sum_probs=349.9
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhH----
Q 002273 80 GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAEC---- 155 (944)
Q Consensus 80 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~---- 155 (944)
.+...+..++..+...|++++|+..|++++...|+. ..++.++.++...|++++|+..|++++.. |.+...+..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~ 159 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNP-NDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFC 159 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCc-hHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHHHHH
Confidence 467889999999999999999999999999998854 67788999999999999999998887543 222222111
Q ss_pred ---------------------------------------HHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q 002273 156 ---------------------------------------LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYN 196 (944)
Q Consensus 156 ---------------------------------------la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 196 (944)
.+.++..+|.++...|++++|+..|+++++.+|++..++..
T Consensus 160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 239 (597)
T 2xpi_A 160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQ 239 (597)
T ss_dssp HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHH
Confidence 24567888999999999999999999999999999988777
Q ss_pred HHH--------------------------------------HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 002273 197 LGV--------------------------------------VYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR 238 (944)
Q Consensus 197 la~--------------------------------------~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 238 (944)
++. .|.+.|++++|++.|+++++. |.+..++..++.++...
T Consensus 240 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 318 (597)
T 2xpi_A 240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVR 318 (597)
T ss_dssp HHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHT
T ss_pred HHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHh
Confidence 754 344678999999999999887 77899999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcC-CC---CCchhHHHhhhcCCHHHHHHHHHH
Q 002273 239 GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNG-SN---FQSPFFELVKLEGDINQGVAYYKK 314 (944)
Q Consensus 239 g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~-~~---~~~~~~~l~~~~~~~~~A~~~~~~ 314 (944)
|++++|+..|+++++..|++...+..++.++...|+...+.......... +. ....++..+...|++++|++.|++
T Consensus 319 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 398 (597)
T 2xpi_A 319 SRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSK 398 (597)
T ss_dssp TCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 99999999999999999999999999999999999886665554433221 11 222456788999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHH
Q 002273 315 ALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL 394 (944)
Q Consensus 315 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 394 (944)
+++..|.+..++..++.+|...|++++|++.|+++++..|++..++..+|.+|...|++++|+++|+++++..|.++.++
T Consensus 399 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 478 (597)
T 2xpi_A 399 SSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLL 478 (597)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh------CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhhHHH
Q 002273 395 NNLGVVYTVQGKMDAAAEMIEKAIAA------NPTY-AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLL 467 (944)
Q Consensus 395 ~~la~~~~~~g~~~~A~~~l~~al~~------~p~~-~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~~~ 467 (944)
..+|.++...|++++|++.|+++++. +|+. ..++..+|.+|...|++++|++.|+++++++|++..++.. +
T Consensus 479 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~--l 556 (597)
T 2xpi_A 479 NELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTA--I 556 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHH--H
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHH--H
Confidence 99999999999999999999999998 6664 7899999999999999999999999999999999887766 4
Q ss_pred HhhhccCCChHHHHHHHHH
Q 002273 468 AMNYINEGHDDKLFEAHRD 486 (944)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~ 486 (944)
+..|...|+.+++.+..++
T Consensus 557 ~~~~~~~g~~~~A~~~~~~ 575 (597)
T 2xpi_A 557 ALVYLHKKIPGLAITHLHE 575 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHH
Confidence 5567778888776655543
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=5.1e-33 Score=319.96 Aligned_cols=365 Identities=17% Similarity=0.202 Sum_probs=277.3
Q ss_pred CCCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 002273 42 TLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTH 121 (944)
Q Consensus 42 ~~~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 121 (944)
...|.++..++.+|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|++..++..
T Consensus 20 ~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 99 (450)
T 2y4t_A 20 FQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQ 99 (450)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 44567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCh---hHHhHHHHH-----HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHH
Q 002273 122 CGILYKDEGRLVEAAESYHKALSADPSYK---PAAECLAIV-----LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA 193 (944)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~-----~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 193 (944)
+|.++...|++++|+..|+++++.+|++. ..+..++.+ +..+|..+...|++++|+..|+++++..|.+..+
T Consensus 100 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 179 (450)
T 2y4t_A 100 RGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAEL 179 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 99999999999999999999999999987 666655544 6677889999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhh
Q 002273 194 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273 (944)
Q Consensus 194 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~ 273 (944)
+..+|.+|...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|++++...|++...+..+..+..
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~--- 256 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKK--- 256 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHH---
Confidence 99999999999999999999999999999999999999999999999999999999999999998877665533211
Q ss_pred hhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 002273 274 TKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFN 353 (944)
Q Consensus 274 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 353 (944)
......+|.++...|++++|+..|+++++..
T Consensus 257 -------------------------------------------------~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~ 287 (450)
T 2y4t_A 257 -------------------------------------------------LNKLIESAEELIRDGRYTDATSKYESVMKTE 287 (450)
T ss_dssp -------------------------------------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred -------------------------------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 1122334444444555555555555555554
Q ss_pred CCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 002273 354 PHCA----EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 429 (944)
Q Consensus 354 p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~ 429 (944)
|+++ ..+..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++++|++..++.
T Consensus 288 p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 367 (450)
T 2y4t_A 288 PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIRE 367 (450)
T ss_dssp CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHH
Confidence 4442 244444555555555555555555555555555555555555555555555555555555555555555554
Q ss_pred HHHH------------HHHHcC-----CHHHHHHHHHH-HHhhCCCC
Q 002273 430 NLGV------------LYRDAG-----SISLAIDAYEQ-CLKIDPDS 458 (944)
Q Consensus 430 ~la~------------~~~~~g-----~~~eA~~~~~~-al~l~P~~ 458 (944)
.++. .|..+| +.+++.+.|++ +++..|++
T Consensus 368 ~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 368 GLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp HHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGG
T ss_pred HHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCC
Confidence 4442 233333 44455555554 55555554
No 11
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=100.00 E-value=1.2e-32 Score=317.01 Aligned_cols=344 Identities=15% Similarity=0.116 Sum_probs=303.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002273 64 FVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKAL 143 (944)
Q Consensus 64 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 143 (944)
...+...+.+++..+|.++..++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|++++
T Consensus 8 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 8 SSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp ---------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cccccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34566778888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH---HHHHHH------------HHHHHHcCCHH
Q 002273 144 SADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA---PAYYNL------------GVVYSELMQYD 208 (944)
Q Consensus 144 ~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~l------------a~~~~~~g~~~ 208 (944)
+.+|++..+ +..+|.++...|++++|+..|+++++.+|++. .++..+ |.++...|+++
T Consensus 88 ~~~p~~~~~-------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 160 (450)
T 2y4t_A 88 QLKMDFTAA-------RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYT 160 (450)
T ss_dssp HHCTTCHHH-------HHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred hcCCCcHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 999998654 77888899999999999999999999999988 776655 66799999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcC
Q 002273 209 TALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNG 288 (944)
Q Consensus 209 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~ 288 (944)
+|+..|+++++..|.+..++..+|.+|...|++++|+..|+++++.+|++..++..++.++...
T Consensus 161 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------------- 224 (450)
T 2y4t_A 161 AAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQL---------------- 224 (450)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHT----------------
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----------------
Confidence 9999999999999999999999999999999999999999999999999999999888887654
Q ss_pred CCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 002273 289 SNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYK 368 (944)
Q Consensus 289 ~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 368 (944)
|++++|+..|++++...|++...+..++.+.. ......+|.++.
T Consensus 225 --------------g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~ 268 (450)
T 2y4t_A 225 --------------GDHELSLSEVRECLKLDQDHKRCFAHYKQVKK----------------------LNKLIESAEELI 268 (450)
T ss_dssp --------------TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH----------------------HHHHHHHHHHHH
T ss_pred --------------CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHH----------------------HHHHHHHHHHHH
Confidence 56699999999999999999887776654311 234566799999
Q ss_pred HCCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 002273 369 DRDNLDKAVECYQMALSIKPNFSQ----SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLA 444 (944)
Q Consensus 369 ~~g~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA 444 (944)
..|++++|+.+|+++++..|+++. .+..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|
T Consensus 269 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A 348 (450)
T 2y4t_A 269 RDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEA 348 (450)
T ss_dssp HHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHH
Confidence 999999999999999999999854 7899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCChhhhhhHH
Q 002273 445 IDAYEQCLKIDPDSRNAGQNRL 466 (944)
Q Consensus 445 ~~~~~~al~l~P~~~~a~~~~~ 466 (944)
+..|+++++++|++..++..+.
T Consensus 349 ~~~~~~al~~~p~~~~~~~~l~ 370 (450)
T 2y4t_A 349 IQDYETAQEHNENDQQIREGLE 370 (450)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHHHHhCcchHHHHHHHH
Confidence 9999999999999998876654
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=1.5e-31 Score=296.86 Aligned_cols=341 Identities=16% Similarity=0.175 Sum_probs=290.2
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (944)
+++.++.+|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|++..++..+|.++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCC---CChhHHhHHHH-----HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 002273 127 KDEGRLVEAAESYHKALSADP---SYKPAAECLAI-----VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLG 198 (944)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~-----~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 198 (944)
...|++++|+..|+++++..| ++...+..++. .+..+|.++...|++++|+..++++++.+|.+..++..+|
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 161 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRA 161 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 999999999999999999999 77666554432 2345578888899999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhh
Q 002273 199 VVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYG 278 (944)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 278 (944)
.++...|++++|+..++++++..|.++.++..+|.++...|++++|+..++++++..|++...+..+..+.
T Consensus 162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~--------- 232 (359)
T 3ieg_A 162 ECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVK--------- 232 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH---------
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHH---------
Confidence 99999999999999999999999999999999999999999999999999999999888876544332211
Q ss_pred hHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHH
Q 002273 279 RALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAE 358 (944)
Q Consensus 279 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 358 (944)
.......+|.++...|++++|+..++++++..|++..
T Consensus 233 -------------------------------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 269 (359)
T 3ieg_A 233 -------------------------------------------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAE 269 (359)
T ss_dssp -------------------------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHH
T ss_pred -------------------------------------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchH
Confidence 1233455677788888888888888888888887763
Q ss_pred ----HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002273 359 ----ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 434 (944)
Q Consensus 359 ----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~ 434 (944)
++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++++|++..++..++.+
T Consensus 270 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 349 (359)
T 3ieg_A 270 YTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKA 349 (359)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 4556788888888888888888888888888888888888888888888888888888888888888887777777
Q ss_pred HHHcC
Q 002273 435 YRDAG 439 (944)
Q Consensus 435 ~~~~g 439 (944)
+...+
T Consensus 350 ~~~~~ 354 (359)
T 3ieg_A 350 QRLLK 354 (359)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
No 13
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=100.00 E-value=2e-31 Score=308.91 Aligned_cols=393 Identities=14% Similarity=0.051 Sum_probs=308.2
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc------
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEK---------DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL------ 111 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------ 111 (944)
.+..+..+|.++..+|++++|++.|+++++. +|.....+..+|.+|..+|++++|+.++++++++
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4566778999999999999999999999885 5677889999999999999999999999999986
Q ss_pred --CCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 002273 112 --DPQNACAHTHCGILYKDE--GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID 187 (944)
Q Consensus 112 --~p~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 187 (944)
.+..+.++..+|.++... +++++|+.+|+++++++|+++..+..++.++.. +...++.++|++.|+++++++
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~----l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYR----LDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH----HHHSCCCCCTHHHHHHHHHHC
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hcCchHHHHHHHHHHHHhhcC
Confidence 345678888888777664 579999999999999999998876555544433 335688899999999999999
Q ss_pred CCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 002273 188 PHYAPAYYNLGVVYSE----LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKN 263 (944)
Q Consensus 188 p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 263 (944)
|++..++..+|..+.. .+++++|++++++++..+|....++..+|.+|...|++++|+..|+++++..|++..++.
T Consensus 206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~ 285 (472)
T 4g1t_A 206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHC 285 (472)
T ss_dssp SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHH
Confidence 9999999999877665 467889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 002273 264 NMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAI 343 (944)
Q Consensus 264 ~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 343 (944)
.++.++...+....... ...........+.+++|+..++++++.+|....++..+|.++...|++++|+
T Consensus 286 ~lg~~y~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~ 354 (472)
T 4g1t_A 286 QIGCCYRAKVFQVMNLR-----------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAE 354 (472)
T ss_dssp HHHHHHHHHHHHHHHC-----------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhhhHH-----------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHH
Confidence 99988865443211000 0001111222345689999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCHH---HHHHHHHHH-HHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002273 344 VFYELAFHFNPHCAE---ACNNLGVIY-KDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIA 419 (944)
Q Consensus 344 ~~~~~al~~~p~~~~---~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 419 (944)
.+|++++++++++.. ++..+|.++ ...|++++|+..|++++++.|++...... ...+...++++++
T Consensus 355 ~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~----------~~~l~~~~~~~l~ 424 (472)
T 4g1t_A 355 YYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM----------KDKLQKIAKMRLS 424 (472)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH----------HHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH----------HHHHHHHHHHHHH
Confidence 999999999887643 456677654 57899999999999999999998654322 3455678889999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhh
Q 002273 420 ANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 464 (944)
Q Consensus 420 ~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~ 464 (944)
.+|+++.++.+||.+|...|++++|+++|++|+++.|.++.+...
T Consensus 425 ~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 425 KNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HCC-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 999999999999999999999999999999999999999887653
No 14
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-31 Score=309.12 Aligned_cols=355 Identities=14% Similarity=0.093 Sum_probs=331.5
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC-----------
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN----------- 115 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----------- 115 (944)
++..++.+|.++...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++.+|.+
T Consensus 38 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (514)
T 2gw1_A 38 DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERN 117 (514)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHH
T ss_pred cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHH
Confidence 477899999999999999999999999999999999999999999999999999999999999887632
Q ss_pred --------------------------------------------------------------------HHHHHHHHHHHH
Q 002273 116 --------------------------------------------------------------------ACAHTHCGILYK 127 (944)
Q Consensus 116 --------------------------------------------------------------------~~~~~~la~~~~ 127 (944)
..++..+|.++.
T Consensus 118 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (514)
T 2gw1_A 118 LNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNL 197 (514)
T ss_dssp HHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 666777888877
Q ss_pred H---cCCHHHHHHHHHHHHH-----c--CCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 002273 128 D---EGRLVEAAESYHKALS-----A--DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNL 197 (944)
Q Consensus 128 ~---~g~~~~A~~~~~~al~-----~--~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 197 (944)
. .|++++|+..|+++++ . .|++.......+.++..+|.++...|++++|+..|+++++.+|. ..++..+
T Consensus 198 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~l 276 (514)
T 2gw1_A 198 YKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR-VNSYIYM 276 (514)
T ss_dssp SSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC-HHHHHHH
T ss_pred HhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc-HHHHHHH
Confidence 6 8999999999999999 6 77776555566778999999999999999999999999999999 9999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhh
Q 002273 198 GVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTY 277 (944)
Q Consensus 198 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~ 277 (944)
|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+..|+++++..|++...+..++.++.
T Consensus 277 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~------- 349 (514)
T 2gw1_A 277 ALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAY------- 349 (514)
T ss_dssp HHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTT-------
T ss_pred HHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHH-------
Confidence 9999999999999999999999999999999999999999999999999999999999999888888777654
Q ss_pred hhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH
Q 002273 278 GRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA 357 (944)
Q Consensus 278 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 357 (944)
..|++++|+..++++++..|.++.++..+|.++...|++++|+..++++++..|++.
T Consensus 350 -----------------------~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 406 (514)
T 2gw1_A 350 -----------------------RENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLD 406 (514)
T ss_dssp -----------------------TTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSS
T ss_pred -----------------------HcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 456779999999999999999999999999999999999999999999999988875
Q ss_pred H------HHHHHHHHHHH---CCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 002273 358 E------ACNNLGVIYKD---RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 428 (944)
Q Consensus 358 ~------~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~ 428 (944)
. ++..+|.++.. .|++++|+..|+++++.+|++..++..+|.++...|++++|+..|+++++++|++..++
T Consensus 407 ~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 486 (514)
T 2gw1_A 407 GIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKL 486 (514)
T ss_dssp SCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHH
Confidence 4 99999999999 99999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHH
Q 002273 429 NNLG 432 (944)
Q Consensus 429 ~~la 432 (944)
..+.
T Consensus 487 ~~~~ 490 (514)
T 2gw1_A 487 QAIT 490 (514)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7764
No 15
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=100.00 E-value=4e-30 Score=285.29 Aligned_cols=326 Identities=15% Similarity=0.168 Sum_probs=256.5
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHH
Q 002273 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160 (944)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 160 (944)
+++.++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++... +
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~ 74 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAA-------R 74 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH-------H
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchH-------H
Confidence 467888899999999999999999999999999999999999999999999999999999999888887653 7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 002273 161 TDLGTSLKLAGNTQDGIQKYYEALKIDP---HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN 237 (944)
Q Consensus 161 ~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 237 (944)
..+|.++...|++++|+..|+++++.+| ++..++..++.++. ...+..+|.++..
T Consensus 75 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------------------~~~~~~~a~~~~~ 132 (359)
T 3ieg_A 75 LQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE----------------------MQRLRSQALDAFD 132 (359)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH----------------------HHHHHHHHHHHHH
Confidence 7888888888999999999999888888 77777777743322 1123334555555
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHH
Q 002273 238 RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALY 317 (944)
Q Consensus 238 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~ 317 (944)
.|++++|+..++++++..|++...+..++.++... |++++|+..++++++
T Consensus 133 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~A~~~~~~~~~ 182 (359)
T 3ieg_A 133 GADYTAAITFLDKILEVCVWDAELRELRAECFIKE------------------------------GEPRKAISDLKAASK 182 (359)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT------------------------------TCHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHC------------------------------CCHHHHHHHHHHHHH
Confidence 55555555555555555555555555555444332 333555555666666
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH------------HHHHHHHHCCCHHHHHHHHHHHHh
Q 002273 318 YNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN------------NLGVIYKDRDNLDKAVECYQMALS 385 (944)
Q Consensus 318 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~------------~la~~~~~~g~~~~A~~~~~~al~ 385 (944)
..|.++.++..+|.++...|++++|+..++++++..|++..++. .+|.++...|++++|+..++++++
T Consensus 183 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~ 262 (359)
T 3ieg_A 183 LKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK 262 (359)
T ss_dssp TCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 66666666666666777777777777777777777776655443 458889999999999999999999
Q ss_pred hCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhh
Q 002273 386 IKPNFSQ----SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 461 (944)
Q Consensus 386 ~~p~~~~----~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a 461 (944)
..|+++. ++..+|.++...|++++|+..++++++.+|+++.++..+|.++...|++++|+..|+++++++|++..+
T Consensus 263 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~ 342 (359)
T 3ieg_A 263 TEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQI 342 (359)
T ss_dssp HCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred cCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHH
Confidence 9999874 467799999999999999999999999999999999999999999999999999999999999999887
Q ss_pred hhhH
Q 002273 462 GQNR 465 (944)
Q Consensus 462 ~~~~ 465 (944)
+..+
T Consensus 343 ~~~l 346 (359)
T 3ieg_A 343 REGL 346 (359)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 16
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=100.00 E-value=1.8e-30 Score=305.87 Aligned_cols=353 Identities=17% Similarity=0.165 Sum_probs=314.1
Q ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHH------
Q 002273 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACA------ 118 (944)
Q Consensus 45 ~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~------ 118 (944)
|.++..++.+|.++...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|+ ++..+|+....
T Consensus 56 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~ 134 (537)
T 3fp2_A 56 PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGASIEPML 134 (537)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC-----------CHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHH
Confidence 45788999999999999999999999999999999999999999999999999999999995 77766654322
Q ss_pred --------------------------------------------------------------HHHHH--------HHHHH
Q 002273 119 --------------------------------------------------------------HTHCG--------ILYKD 128 (944)
Q Consensus 119 --------------------------------------------------------------~~~la--------~~~~~ 128 (944)
...++ .....
T Consensus 135 ~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a 214 (537)
T 3fp2_A 135 ERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVA 214 (537)
T ss_dssp HHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHH
Confidence 11111 12223
Q ss_pred cCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q 002273 129 EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYD 208 (944)
Q Consensus 129 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 208 (944)
.|++++|+..|+++++.+|++...+..++.++..+|.++...|++++|+..|+++++.+|+ ..++..+|.++...|+++
T Consensus 215 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~ 293 (537)
T 3fp2_A 215 NDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQ 293 (537)
T ss_dssp HHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCH
T ss_pred HHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHH
Confidence 3589999999999999999999998899999999999999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcC
Q 002273 209 TALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNG 288 (944)
Q Consensus 209 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~ 288 (944)
+|+..++++++.+|.++.++..+|.++...|++++|+..|+++++.+|++...+..++.++...
T Consensus 294 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~---------------- 357 (537)
T 3fp2_A 294 EFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQ---------------- 357 (537)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHT----------------
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----------------
Confidence 9999999999999999999999999999999999999999999999999999988888876654
Q ss_pred CCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH------HHHHH
Q 002273 289 SNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA------EACNN 362 (944)
Q Consensus 289 ~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~ 362 (944)
|++++|+..++++++..|.++.++..+|.++...|++++|+..|+++++..|++. ..+..
T Consensus 358 --------------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 423 (537)
T 3fp2_A 358 --------------GKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIG 423 (537)
T ss_dssp --------------TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHH
T ss_pred --------------CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHH
Confidence 5669999999999999999999999999999999999999999999999876553 34667
Q ss_pred HHHHHHHC----------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 002273 363 LGVIYKDR----------DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 429 (944)
Q Consensus 363 la~~~~~~----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~ 429 (944)
+|.++... |++++|+..|+++++.+|++..++..+|.++...|++++|+++|++++++.|+..+...
T Consensus 424 ~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 424 KATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 78899998 99999999999999999999999999999999999999999999999999999887654
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.97 E-value=2.4e-28 Score=267.77 Aligned_cols=287 Identities=13% Similarity=0.126 Sum_probs=143.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH
Q 002273 112 DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA 191 (944)
Q Consensus 112 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 191 (944)
.++++..+..+|..++..|++++|+..|+++++.+|.+... +..++.++...|++++|+..++++++.+|+++
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~-------~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 90 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASC-------LPVHIGTLVELNKANELFYLSHKLVDLYPSNP 90 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTT-------HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhh-------HHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH
Confidence 34444455555555555555555555555555555554433 23333344444555555555555555555555
Q ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 002273 192 PAYYNLGVVYSELM-QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 270 (944)
Q Consensus 192 ~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~ 270 (944)
.++..+|.++...| ++++|+.+|+++++.+|.+..++..+|.++...|++++|+..|+++++..|++...+..++.++.
T Consensus 91 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 170 (330)
T 3hym_B 91 VSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYG 170 (330)
T ss_dssp HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 55555555555555 55555555555555555555555555555555555555555555555555444333333332222
Q ss_pred HhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002273 271 DLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 350 (944)
Q Consensus 271 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 350 (944)
. .|++++|+..++++++..|.++.++..+|.++...|++++|+..+++++
T Consensus 171 ~------------------------------~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 220 (330)
T 3hym_B 171 L------------------------------TNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDAL 220 (330)
T ss_dssp H------------------------------TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred H------------------------------HhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2 1222333333333333333344444445555555555555555555555
Q ss_pred hhC---------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 002273 351 HFN---------PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 421 (944)
Q Consensus 351 ~~~---------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~ 421 (944)
+.. |....++..+|.++...|++++|+.+|+++++.+|++..++..+|.++...|++++|+.+|+++++++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 221 EKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp HHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred HHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 443 33344555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCCHHHHHHHHHHH
Q 002273 422 PTYAEAYNNLGVLY 435 (944)
Q Consensus 422 p~~~~a~~~la~~~ 435 (944)
|++..++..++.++
T Consensus 301 p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 301 RDDTFSVTMLGHCI 314 (330)
T ss_dssp SCCHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHH
Confidence 55555555555554
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.97 E-value=3e-28 Score=267.04 Aligned_cols=305 Identities=19% Similarity=0.183 Sum_probs=261.7
Q ss_pred CCCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 002273 42 TLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTH 121 (944)
Q Consensus 42 ~~~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 121 (944)
...+.+...++.+|..++..|++++|+.+|+++++.+|.+...+..++.++...|++++|+..++++++.+|+++.++..
T Consensus 16 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 95 (330)
T 3hym_B 16 DGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFA 95 (330)
T ss_dssp ----CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH
T ss_pred hhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHH
Confidence 34456677888889999999999999999999999999888888888889999999999999999999999998889999
Q ss_pred HHHHHHHcC-CHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 002273 122 CGILYKDEG-RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVV 200 (944)
Q Consensus 122 la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 200 (944)
+|.++...| ++++|+..|+++++.+|++... +..+|.++...|++++|+..|+++++..|++..++..+|.+
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-------~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 168 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTLEKTYGPA-------WIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLE 168 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHH-------HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHhCCccHHH-------HHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 999999998 8899999999999888887654 77888888888999999999998888888888888888888
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhH
Q 002273 201 YSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRA 280 (944)
Q Consensus 201 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a 280 (944)
+...|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++..+.....
T Consensus 169 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~------------------- 229 (330)
T 3hym_B 169 YGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNE------------------- 229 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCS-------------------
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccc-------------------
Confidence 8888889899998888888888888888888888888888888888888887765432100
Q ss_pred HHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHH
Q 002273 281 LLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC 360 (944)
Q Consensus 281 ~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 360 (944)
...|....++..+|.++...|++++|+..++++++.+|++..++
T Consensus 230 ------------------------------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 273 (330)
T 3hym_B 230 ------------------------------------VTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTY 273 (330)
T ss_dssp ------------------------------------CTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHH
T ss_pred ------------------------------------ccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHH
Confidence 00145578899999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHcCCHH
Q 002273 361 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVY-TVQGKMD 408 (944)
Q Consensus 361 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~~~ 408 (944)
..+|.++...|++++|+++|+++++++|+++.++..++.++ ...|+.+
T Consensus 274 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 274 SAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 99999999999999999999999999999999999999998 4556543
No 19
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.97 E-value=2.1e-28 Score=273.16 Aligned_cols=311 Identities=16% Similarity=0.149 Sum_probs=243.1
Q ss_pred HHHcCCHHHHHH-HHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 002273 126 YKDEGRLVEAAE-SYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL 204 (944)
Q Consensus 126 ~~~~g~~~~A~~-~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 204 (944)
+...|++++|+. .|++++...|+++.. .+..++.+|..+...|++++|+..|+++++.+|++..++..+|.++...
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 111 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLR---DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAEN 111 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTT---TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCccc---chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence 444567777777 777777776665421 0123566777777778888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHH
Q 002273 205 MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLF 284 (944)
Q Consensus 205 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~ 284 (944)
|++++|+..|+++++.+|.+..++..+|.++...|++++|+..+++++...|++...+..++......
T Consensus 112 g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 179 (368)
T 1fch_A 112 EQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGA------------ 179 (368)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------------
T ss_pred cCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhh------------
Confidence 88888888888888888888888888888888888888888888888888877665543221110000
Q ss_pred hhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHH
Q 002273 285 RLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWH--YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNN 362 (944)
Q Consensus 285 ~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 362 (944)
........+..++ ..|++++|+..++++++..|. ++.++..+|.++...|++++|+..|+++++.+|+++.++..
T Consensus 180 --~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 256 (368)
T 1fch_A 180 --GLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNK 256 (368)
T ss_dssp --------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred --cccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHH
Confidence 0000011122223 677889999999999999999 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----------HHHHHHH
Q 002273 363 LGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY-----------AEAYNNL 431 (944)
Q Consensus 363 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~-----------~~a~~~l 431 (944)
+|.++...|++++|+..|+++++++|++..++..+|.++...|++++|+.+|++++++.|++ ..++..+
T Consensus 257 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l 336 (368)
T 1fch_A 257 LGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTL 336 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888 8999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhh
Q 002273 432 GVLYRDAGSISLAIDAYEQCLKI 454 (944)
Q Consensus 432 a~~~~~~g~~~eA~~~~~~al~l 454 (944)
|.++..+|++++|..+++++++.
T Consensus 337 ~~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 337 RLALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp HHHHHHHTCGGGHHHHHTTCHHH
T ss_pred HHHHHHhCChHhHHHhHHHHHHH
Confidence 99999999999999999887765
No 20
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.97 E-value=8.5e-26 Score=262.85 Aligned_cols=367 Identities=18% Similarity=0.139 Sum_probs=326.5
Q ss_pred CCChHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCCCH
Q 002273 45 GFEGKDALSYANILRS----RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQM----QNMGRLAFDSFSEAVKLDPQNA 116 (944)
Q Consensus 45 ~~~~~~~~~~A~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~ 116 (944)
+.+++.++.+|..+.. .+++++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+.+|+++.+. .++
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~ 111 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLP 111 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCH
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCH
Confidence 4578999999999999 99999999999999986 689999999999999 99999999999999875 588
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCC
Q 002273 117 CAHTHCGILYKD----EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKL----AGNTQDGIQKYYEALKIDP 188 (944)
Q Consensus 117 ~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p 188 (944)
.+++.+|.+|.. .+++++|+.+|+++.+.. +.. ++..+|.+|.. .+++++|+.+|+++++.
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~-------a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~-- 180 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG--RDS-------GQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ-- 180 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHH-------HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHH-------HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--
Confidence 999999999999 899999999999998763 433 47778888887 88999999999999986
Q ss_pred CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHH
Q 002273 189 HYAPAYYNLGVVYSE----LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN----RGDLESAIACYERCLAVSPNFEI 260 (944)
Q Consensus 189 ~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~ 260 (944)
.++.+++.+|.+|.. .+++++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+.+|+++++. .+..
T Consensus 181 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~ 256 (490)
T 2xm6_A 181 GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSI 256 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHH
T ss_pred CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHH
Confidence 579999999999999 99999999999999876 568999999999997 89999999999999875 5677
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----
Q 002273 261 AKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM---- 336 (944)
Q Consensus 261 ~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---- 336 (944)
+...++.++..-. ...+++++|+.+|+++.+. .++.+++.+|.+|...
T Consensus 257 a~~~lg~~y~~g~--------------------------~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~~~~g~ 308 (490)
T 2xm6_A 257 AQFRLGYILEQGL--------------------------AGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDKGAEGV 308 (490)
T ss_dssp HHHHHHHHHHHTT--------------------------TSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHCBTTB
T ss_pred HHHHHHHHHHCCC--------------------------CCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHcCCCCC
Confidence 7888887765411 1257889999999999865 6789999999999998
Q ss_pred -CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHH
Q 002273 337 -LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD---NLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMD 408 (944)
Q Consensus 337 -g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~ 408 (944)
+++++|+..|+++++. .++.+++.+|.+|...| ++++|+++|+++++. .++.+++++|.+|.. .++++
T Consensus 309 ~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~ 384 (490)
T 2xm6_A 309 AKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQ 384 (490)
T ss_dssp CCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred cCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHH
Confidence 9999999999999986 46789999999999877 899999999999987 679999999999999 89999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCC---Chhhhhh
Q 002273 409 AAAEMIEKAIAANPTYAEAYNNLGVLYRD----AGSISLAIDAYEQCLKIDPD---SRNAGQN 464 (944)
Q Consensus 409 ~A~~~l~~al~~~p~~~~a~~~la~~~~~----~g~~~eA~~~~~~al~l~P~---~~~a~~~ 464 (944)
+|+.+|+++++.. ++.++++||.+|.. .+++++|+.+|+++++..|+ ++.+..+
T Consensus 385 ~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~ 445 (490)
T 2xm6_A 385 QAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNIT 445 (490)
T ss_dssp HHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHH
Confidence 9999999999864 68999999999999 89999999999999999965 5555444
No 21
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.96 E-value=1.5e-27 Score=276.31 Aligned_cols=363 Identities=13% Similarity=0.033 Sum_probs=295.0
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChh
Q 002273 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKL---------DPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKP 151 (944)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 151 (944)
.+..+..+|.++..+|++++|++.|++++++ +|....++.++|.+|..+|++++|+.++++++++.+....
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 4677889999999999999999999999876 5677888999999999999999999999999987443211
Q ss_pred H-HhHHHHHHHHHHHHHHHc--CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCH
Q 002273 152 A-AECLAIVLTDLGTSLKLA--GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE---LMQYDTALGCYEKAALERPMYA 225 (944)
Q Consensus 152 ~-~~~la~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~---~g~~~~A~~~~~~al~~~p~~~ 225 (944)
. ....+.++..+|..+... +++++|+.+|+++++++|+++.++..++.++.. .+++++|++.|+++++++|.+.
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~ 209 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence 1 011234566667666554 579999999999999999999999999988654 5778899999999999999999
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhh
Q 002273 226 EAYCNMGVIYKN----RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKL 301 (944)
Q Consensus 226 ~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~ 301 (944)
.++..+|..+.. .+++++|+.++++++..+|++..++..++.++...
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~----------------------------- 260 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRK----------------------------- 260 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHT-----------------------------
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHc-----------------------------
Confidence 999998877665 46788999999999999999999999988887664
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-------------------CChHHHHHHHHHHHhhCCCCHHHHHH
Q 002273 302 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM-------------------LKFDMAIVFYELAFHFNPHCAEACNN 362 (944)
Q Consensus 302 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-------------------g~~~~A~~~~~~al~~~p~~~~~~~~ 362 (944)
|++++|+..++++++.+|+++.++..+|.+|... +.+++|+..++++++.+|.+..++..
T Consensus 261 -~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 339 (472)
T 4g1t_A 261 -DEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSI 339 (472)
T ss_dssp -TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHH
T ss_pred -CchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhh
Confidence 4569999999999999999999999999988653 34678999999999999999999999
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCCHH---HHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 002273 363 LGVIYKDRDNLDKAVECYQMALSIKPNFSQ---SLNNLGVVY-TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 438 (944)
Q Consensus 363 la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~~la~~~-~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~ 438 (944)
+|.++...|++++|+.+|++++++.+++.. ++..+|.++ ...|++++|+..|++++++.|++......
T Consensus 340 lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~-------- 411 (472)
T 4g1t_A 340 LASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKM-------- 411 (472)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHH--------
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHH--------
Confidence 999999999999999999999999887654 456677654 57899999999999999999997654322
Q ss_pred CCHHHHHHHHHHHHhhCCCChhhhhhHHHHhhhccCCChHHHHHHHH
Q 002273 439 GSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHR 485 (944)
Q Consensus 439 g~~~eA~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 485 (944)
...+.+.++++++.+|+++.++.++ +..|...|+.+++.+.++
T Consensus 412 --~~~l~~~~~~~l~~~p~~~~~~~~L--G~~~~~~g~~~~A~~~y~ 454 (472)
T 4g1t_A 412 --KDKLQKIAKMRLSKNGADSEALHVL--AFLQELNEKMQQADEDSE 454 (472)
T ss_dssp --HHHHHHHHHHHHHHCC-CTTHHHHH--HHHHHHHHHCC-------
T ss_pred --HHHHHHHHHHHHHhCCCCHHHHHHH--HHHHHHcCCHHHHHHHHH
Confidence 3456678899999999999988774 455555566665554443
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.96 E-value=5.6e-28 Score=269.70 Aligned_cols=313 Identities=16% Similarity=0.171 Sum_probs=242.6
Q ss_pred hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHH-HHHHHHhcCCCCH----HHHHHHHHHHHHcCCHHH
Q 002273 60 SRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFD-SFSEAVKLDPQNA----CAHTHCGILYKDEGRLVE 134 (944)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~ 134 (944)
..+.|..+...++.+....|. ++...|++++|+. .|+++++..|+++ ..++.+|.++...|++++
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 82 (368)
T 1fch_A 13 DVDFWDKLQAELEEMAKRDAE----------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPN 82 (368)
T ss_dssp -------------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHH
T ss_pred CcccHHHHHHHHHHHHcCCch----------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHH
Confidence 334455555555555444432 4455678888888 8888888777664 457888888888888888
Q ss_pred HHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002273 135 AAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCY 214 (944)
Q Consensus 135 A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 214 (944)
|+..|+++++.+|++... +..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+
T Consensus 83 A~~~~~~al~~~p~~~~~-------~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 155 (368)
T 1fch_A 83 AVLLFEAAVQQDPKHMEA-------WQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEIL 155 (368)
T ss_dssp HHHHHHHHHHSCTTCHHH-------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHH-------HHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 888888888888887654 6677777888888888888888888888888888888888888888888888888
Q ss_pred HHHHHhCCCCHHHHH----------------HHHHHHHHcCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHhhhhh
Q 002273 215 EKAALERPMYAEAYC----------------NMGVIYKNRGDLESAIACYERCLAVSPN--FEIAKNNMAIALTDLGTKT 276 (944)
Q Consensus 215 ~~al~~~p~~~~~~~----------------~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~l~~~~~~~ 276 (944)
+++++..|.+...+. .++.++ ..|++++|+..|+++++..|+ +...+..++.++..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~----- 229 (368)
T 1fch_A 156 RDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL----- 229 (368)
T ss_dssp HHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH-----
T ss_pred HHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHH-----
Confidence 888888887665554 456666 889999999999999999998 77777777777655
Q ss_pred hhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 002273 277 YGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC 356 (944)
Q Consensus 277 ~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 356 (944)
.|++++|+..|+++++..|+++.++..+|.++...|++++|+..|+++++.+|++
T Consensus 230 -------------------------~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 284 (368)
T 1fch_A 230 -------------------------SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY 284 (368)
T ss_dssp -------------------------TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred -------------------------cCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc
Confidence 4566999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002273 357 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF-----------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 420 (944)
Q Consensus 357 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-----------~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 420 (944)
..++..+|.++...|++++|+..|++++++.|++ ..++..+|.++..+|++++|..+++++++.
T Consensus 285 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 359 (368)
T 1fch_A 285 IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 359 (368)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHH
Confidence 9999999999999999999999999999998888 899999999999999999999998877654
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.95 E-value=5.5e-27 Score=261.70 Aligned_cols=291 Identities=20% Similarity=0.157 Sum_probs=247.0
Q ss_pred HHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002273 137 ESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216 (944)
Q Consensus 137 ~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 216 (944)
..+.+.+...+.++.. -+..++.+|..+...|++++|+..|+++++.+|++..++..+|.+|...|++++|+..|++
T Consensus 48 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 124 (365)
T 4eqf_A 48 SASEKGYYFHTENPFK---DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQR 124 (365)
T ss_dssp -----CCCCCSSCTTT---TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhhhcccCCccc---chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4455555555554422 1223778899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH---HHHHHHhhhhhhhhHHHHHhhcCCCCCc
Q 002273 217 AALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM---AIALTDLGTKTYGRALLLFRLNGSNFQS 293 (944)
Q Consensus 217 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l---a~~l~~~~~~~~~~a~~~~~~~~~~~~~ 293 (944)
+++.+|.+..++..+|.++...|++++|+..|+++++..|++...+..+ +.++..+
T Consensus 125 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l--------------------- 183 (365)
T 4eqf_A 125 CLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRM--------------------- 183 (365)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-----------------------------------
T ss_pred HHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHH---------------------
Confidence 9999999999999999999999999999999999999999877666554 1122222
Q ss_pred hhHHHhhhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC
Q 002273 294 PFFELVKLEGDINQGVAYYKKALYYNWH--YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD 371 (944)
Q Consensus 294 ~~~~l~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 371 (944)
...+...|++++|+..|+++++..|. ++.++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|
T Consensus 184 --~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 261 (365)
T 4eqf_A 184 --SKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGD 261 (365)
T ss_dssp -------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred --HHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 22356677789999999999999999 89999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcC
Q 002273 372 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT------------YAEAYNNLGVLYRDAG 439 (944)
Q Consensus 372 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~------------~~~a~~~la~~~~~~g 439 (944)
++++|+..|+++++++|+++.++.++|.++...|++++|+.+|++++++.|+ ...++..++.++..+|
T Consensus 262 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 341 (365)
T 4eqf_A 262 RSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMD 341 (365)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999999876 3678999999999999
Q ss_pred CHHHHHHHHHHHHh
Q 002273 440 SISLAIDAYEQCLK 453 (944)
Q Consensus 440 ~~~eA~~~~~~al~ 453 (944)
+.+.|....++.+.
T Consensus 342 ~~~~a~~~~~~~l~ 355 (365)
T 4eqf_A 342 QPELFQAANLGDLD 355 (365)
T ss_dssp CHHHHHHHHTTCCG
T ss_pred cHHHHHHHHHhhHH
Confidence 99988887766443
No 24
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.95 E-value=3.3e-24 Score=249.39 Aligned_cols=370 Identities=16% Similarity=0.089 Sum_probs=320.9
Q ss_pred CChHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHHHhcCCCCHH
Q 002273 46 FEGKDALSYANILRS----RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQM----QNMGRLAFDSFSEAVKLDPQNAC 117 (944)
Q Consensus 46 ~~~~~~~~~A~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~ 117 (944)
.++.+++.+|..+.. .+++++|+.+|+++.+. .++.+++.+|.+|.. .+++++|+..|+++.+. .++.
T Consensus 73 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~ 148 (490)
T 2xm6_A 73 GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDS 148 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHH
Confidence 367889999999999 99999999999999875 589999999999999 89999999999999875 5789
Q ss_pred HHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCCC
Q 002273 118 AHTHCGILYKD----EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKL----AGNTQDGIQKYYEALKIDPH 189 (944)
Q Consensus 118 ~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p~ 189 (944)
+++.+|.+|.. .+++++|+.+|+++.+.. +.. ++..+|.++.. .+++++|+.+|+++.+. .
T Consensus 149 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~--~~~-------a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~ 217 (490)
T 2xm6_A 149 GQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG--NVW-------SCNQLGYMYSRGLGVERNDAISAQWYRKSATS--G 217 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHH-------HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--T
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHH-------HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC--C
Confidence 99999999998 899999999999999863 333 47788888888 89999999999999875 5
Q ss_pred CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHH
Q 002273 190 YAPAYYNLGVVYSE----LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN----RGDLESAIACYERCLAVSPNFEIA 261 (944)
Q Consensus 190 ~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~ 261 (944)
++.+++.+|.+|.. .+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++.+. ++..+
T Consensus 218 ~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a 293 (490)
T 2xm6_A 218 DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDG 293 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHH
Confidence 68999999999997 89999999999999875 568899999999999 99999999999999865 56778
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC---C
Q 002273 262 KNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML---K 338 (944)
Q Consensus 262 ~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~ 338 (944)
...++.++..... ...+++++|+.+|+++++. .++.+++.+|.+|...| +
T Consensus 294 ~~~Lg~~y~~~~~-------------------------g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~ 346 (490)
T 2xm6_A 294 QYYLAHLYDKGAE-------------------------GVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEE 346 (490)
T ss_dssp HHHHHHHHHHCBT-------------------------TBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHH
T ss_pred HHHHHHHHHcCCC-------------------------CCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCccc
Confidence 8888887765310 1137889999999999986 56789999999999877 8
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHH
Q 002273 339 FDMAIVFYELAFHFNPHCAEACNNLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAA 410 (944)
Q Consensus 339 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A 410 (944)
+++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++.+. .++.+++++|.+|.. .+++++|
T Consensus 347 ~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A 422 (490)
T 2xm6_A 347 HKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQA 422 (490)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 99999999999987 579999999999999 89999999999999986 468999999999999 8999999
Q ss_pred HHHHHHHHHhCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhhHHH
Q 002273 411 AEMIEKAIAANPT---YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLL 467 (944)
Q Consensus 411 ~~~l~~al~~~p~---~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~~~ 467 (944)
+.+|+++++..|+ ++.+..+++.++.. +.++|.+..++.++..|+...+....+.
T Consensus 423 ~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~--~~~~a~~~a~~~~~~~~~~~~~~~~~l~ 480 (490)
T 2xm6_A 423 WAWFDTASTNDMNLFGTENRNITEKKLTAK--QLQQAELLSQQYIEKYAPEAWARMQKLK 480 (490)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTTSCHH--HHHHHHHHHHHHHHHHCHHHHHHHHHHS
T ss_pred HHHHHHHHHCCCCCcCCHHHHHHHHhcCHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999954 88999999988765 4566666667777666766655554333
No 25
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.95 E-value=8.3e-26 Score=247.19 Aligned_cols=285 Identities=19% Similarity=0.202 Sum_probs=254.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 002273 159 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR 238 (944)
Q Consensus 159 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 238 (944)
.++.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|.+..++..+|.++...
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 102 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 102 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHc
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchh-HH-HhhhcCCHHHHHHHHHHHH
Q 002273 239 GDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPF-FE-LVKLEGDINQGVAYYKKAL 316 (944)
Q Consensus 239 g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~-~~-l~~~~~~~~~A~~~~~~al 316 (944)
|++++|+..++++++..|.+...+..+........ ....+ .. ++...|++++|+..+++++
T Consensus 103 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 165 (327)
T 3cv0_A 103 HNANAALASLRAWLLSQPQYEQLGSVNLQADVDID-----------------DLNVQSEDFFFAAPNEYRECRTLLHAAL 165 (327)
T ss_dssp TCHHHHHHHHHHHHHTSTTTTTC-------------------------------------CCTTSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHH-----------------HHHHHHHhHHHHHcccHHHHHHHHHHHH
Confidence 99999999999999999988766655421110000 00001 11 2556778899999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 002273 317 YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNN 396 (944)
Q Consensus 317 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 396 (944)
+..|.+..++..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..|+++++..|++..++..
T Consensus 166 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 245 (327)
T 3cv0_A 166 EMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYN 245 (327)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChh
Q 002273 397 LGVVYTVQGKMDAAAEMIEKAIAANPT------------YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 460 (944)
Q Consensus 397 la~~~~~~g~~~~A~~~l~~al~~~p~------------~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~ 460 (944)
+|.++...|++++|++.++++++..|+ +..++..+|.++...|++++|...++++++..|++..
T Consensus 246 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~ 321 (327)
T 3cv0_A 246 MAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEFG 321 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHHTT
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchhhh
Confidence 999999999999999999999999999 7999999999999999999999999999888776543
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.95 E-value=5.3e-26 Score=253.70 Aligned_cols=274 Identities=18% Similarity=0.208 Sum_probs=238.0
Q ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 002273 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (944)
Q Consensus 46 ~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (944)
.+...++.+|..++..|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++++|++..++..+|.+
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 35667999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCChhHHhHH---HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--CHHHHHHHHHH
Q 002273 126 YKDEGRLVEAAESYHKALSADPSYKPAAECL---AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH--YAPAYYNLGVV 200 (944)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l---a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~ 200 (944)
+...|++++|+..|+++++..|++......+ +.++..+|.++...|++++|+..|+++++.+|+ ++.++..+|.+
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 9999999999999999999998876654443 455667799999999999999999999999999 89999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhH
Q 002273 201 YSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRA 280 (944)
Q Consensus 201 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a 280 (944)
|...|++++|+.+|+++++..|.+..++..+|.++...|++++|+..|+++++.+|++..++..++.++...|+
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~------ 296 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGA------ 296 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC------
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC------
Confidence 99999999999999999999999999999999999999999999999999999999999999999988777654
Q ss_pred HHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHcCChHHHHHHHHH
Q 002273 281 LLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHY------------ADAMYNLGVAYGEMLKFDMAIVFYEL 348 (944)
Q Consensus 281 ~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~------------~~~~~~la~~~~~~g~~~~A~~~~~~ 348 (944)
+++|+..|+++++..|+. ..++..++.++...|+.+.+....++
T Consensus 297 ------------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 297 ------------------------YREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp ------------------------CHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred ------------------------HHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 499999999999988763 45667777777777777666665554
Q ss_pred H
Q 002273 349 A 349 (944)
Q Consensus 349 a 349 (944)
.
T Consensus 353 ~ 353 (365)
T 4eqf_A 353 D 353 (365)
T ss_dssp C
T ss_pred h
Confidence 3
No 27
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.95 E-value=2.6e-24 Score=252.99 Aligned_cols=413 Identities=10% Similarity=-0.007 Sum_probs=315.5
Q ss_pred CCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 002273 43 LKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC 122 (944)
Q Consensus 43 ~~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 122 (944)
..|.+...|+.++.. ...|++++|...|+++++..|.+...|..++..+...|++++|...|+++++..| +...|..+
T Consensus 8 ~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~lw~~~ 85 (530)
T 2ooe_A 8 ENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDLWKCY 85 (530)
T ss_dssp HCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHHHHHH
T ss_pred hCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHH
Confidence 356788999999984 7899999999999999999999999999999999999999999999999999999 67788888
Q ss_pred HH-HHHHcCCHHHHHH----HHHHHHHc---CCCChhHHhHHHHHHHHHHHHHHH---------cCChHHHHHHHHHHHh
Q 002273 123 GI-LYKDEGRLVEAAE----SYHKALSA---DPSYKPAAECLAIVLTDLGTSLKL---------AGNTQDGIQKYYEALK 185 (944)
Q Consensus 123 a~-~~~~~g~~~~A~~----~~~~al~~---~p~~~~~~~~la~~~~~lg~~~~~---------~g~~~~A~~~~~~al~ 185 (944)
+. +....|++++|.+ .|++++.. +|..... +...+..... .|++++|..+|+++++
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~-------w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~ 158 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQI-------WVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV 158 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHH-------HHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHH-------HHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh
Confidence 85 4456788877765 78888765 3344333 3334443333 6889999999999999
Q ss_pred hCCCCH--HHHHHHHHHH-------------HHcCCHHHHHHHHHH------HHHh-----CCCC-------HHHHHHHH
Q 002273 186 IDPHYA--PAYYNLGVVY-------------SELMQYDTALGCYEK------AALE-----RPMY-------AEAYCNMG 232 (944)
Q Consensus 186 ~~p~~~--~~~~~la~~~-------------~~~g~~~~A~~~~~~------al~~-----~p~~-------~~~~~~la 232 (944)
.|... ..|....... ...+++.+|...+++ .++. .|.. ...|....
T Consensus 159 -~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~ 237 (530)
T 2ooe_A 159 -NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYI 237 (530)
T ss_dssp -SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHH
T ss_pred -chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHH
Confidence 56543 2333322221 134567888877766 3332 2321 23444443
Q ss_pred HHHHHc----CCH----HHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-------hhhhhhhhHHHHHhhcCCCCCchhHH
Q 002273 233 VIYKNR----GDL----ESAIACYERCLAVSPNFEIAKNNMAIALTD-------LGTKTYGRALLLFRLNGSNFQSPFFE 297 (944)
Q Consensus 233 ~~~~~~----g~~----~~A~~~~~~al~~~p~~~~~~~~la~~l~~-------~~~~~~~~a~~~~~~~~~~~~~~~~~ 297 (944)
...... ++. ++++..|++++...|.++..|..++..+.. .|+...+..+
T Consensus 238 ~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~---------------- 301 (530)
T 2ooe_A 238 QWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLF---------------- 301 (530)
T ss_dssp HHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHH----------------
T ss_pred HHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhh----------------
Confidence 332221 232 478899999999999999999999999876 4543211100
Q ss_pred HhhhcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHCCCHHH
Q 002273 298 LVKLEGDINQGVAYYKKALY-YNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA-EACNNLGVIYKDRDNLDK 375 (944)
Q Consensus 298 l~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g~~~~ 375 (944)
.++|+..|+++++ ..|++..+|..++.++...|++++|...|+++++..|.++ .+|..++.++.+.|++++
T Consensus 302 -------~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~ 374 (530)
T 2ooe_A 302 -------SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKS 374 (530)
T ss_dssp -------HHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred -------hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHH
Confidence 2789999999997 7899999999999999999999999999999999999885 689999999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002273 376 AVECYQMALSIKPNFSQSLNNLGVV-YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKI 454 (944)
Q Consensus 376 A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l 454 (944)
|++.|+++++..|.....+...+.+ +...|++++|..+|+++++..|+++.++..++.++...|+.++|...|++++..
T Consensus 375 A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 375 GRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence 9999999999988877777776666 346899999999999999999999999999999999999999999999999998
Q ss_pred CCCChh----hhhhHHHHhhhccCCChHHHHHHHHHHHHH
Q 002273 455 DPDSRN----AGQNRLLAMNYINEGHDDKLFEAHRDWGKR 490 (944)
Q Consensus 455 ~P~~~~----a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (944)
.|.++. .+... .......|+.+......++..+.
T Consensus 455 ~~~~~~~~~~lw~~~--~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 455 GSLPPEKSGEIWARF--LAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp CCSCGGGCHHHHHHH--HHHHHHSSCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHH
Confidence 877654 33221 11223457776665554444333
No 28
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.94 E-value=1.2e-23 Score=247.38 Aligned_cols=380 Identities=12% Similarity=-0.014 Sum_probs=269.1
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCh
Q 002273 71 YEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYK 150 (944)
Q Consensus 71 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 150 (944)
|+++++.+|.+..+|..++.. ...|++++|...|+++++..|.+..+|..++..+...|++++|...|++++...| +.
T Consensus 2 le~al~~~P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~ 79 (530)
T 2ooe_A 2 AEKKLEENPYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HI 79 (530)
T ss_dssp HHHHHHHCTTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CH
T ss_pred hhhHhhhCCCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-Ch
Confidence 688999999999999999984 7899999999999999999999999999999999999999999999999999999 45
Q ss_pred hHHhHHHHHHHHHHH-HHHHcCChHHHHH----HHHHHHhh---CCCCHHHHHHHHHHHHH---------cCCHHHHHHH
Q 002273 151 PAAECLAIVLTDLGT-SLKLAGNTQDGIQ----KYYEALKI---DPHYAPAYYNLGVVYSE---------LMQYDTALGC 213 (944)
Q Consensus 151 ~~~~~la~~~~~lg~-~~~~~g~~~~A~~----~~~~al~~---~p~~~~~~~~la~~~~~---------~g~~~~A~~~ 213 (944)
+.+ ...+. .....|++++|.+ .|++++.. +|.+..+|...+..... .|++++|..+
T Consensus 80 ~lw-------~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 152 (530)
T 2ooe_A 80 DLW-------KCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRV 152 (530)
T ss_dssp HHH-------HHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHH
T ss_pred HHH-------HHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHH
Confidence 443 33332 2334577776665 78888764 56778888888887765 7899999999
Q ss_pred HHHHHHhCCCCH--HHHHHHHHHH-------------HHcCCHHHHHHHHHH------HHHh-----CCCc-------HH
Q 002273 214 YEKAALERPMYA--EAYCNMGVIY-------------KNRGDLESAIACYER------CLAV-----SPNF-------EI 260 (944)
Q Consensus 214 ~~~al~~~p~~~--~~~~~la~~~-------------~~~g~~~~A~~~~~~------al~~-----~p~~-------~~ 260 (944)
|+++++ .|... ..+....... ...+++.+|...++. .++. .|.. ..
T Consensus 153 y~~al~-~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~ 231 (530)
T 2ooe_A 153 YQRGCV-NPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVD 231 (530)
T ss_dssp HHHHTT-SCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHH
T ss_pred HHHHHh-chhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHH
Confidence 999999 56542 2333222211 124567778777665 3332 2321 12
Q ss_pred HHHHHHHHHHHh----hhh--hhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002273 261 AKNNMAIALTDL----GTK--TYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYG 334 (944)
Q Consensus 261 ~~~~la~~l~~~----~~~--~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 334 (944)
.+.......... +.. ...+++..+.. .+....+..++.-.+-..+... ...+ .
T Consensus 232 ~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~-----------al~~~p~~~~~w~~~~~~~~~~------~~~~----~ 290 (530)
T 2ooe_A 232 MWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQ-----------CLLVLGHHPDIWYEAAQYLEQS------SKLL----A 290 (530)
T ss_dssp HHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHH-----------HHHHHTTCHHHHHHHHHHHHHH------HHHH----H
T ss_pred HHHHHHHHHHcCCccCCcchhHHHHHHHHHHH-----------HHHhCCCCHHHHHHHHHHHHHh------chhh----h
Confidence 333322221110 000 00111111110 0000111111111111111100 0000 1
Q ss_pred HcCCh-------HHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHcC
Q 002273 335 EMLKF-------DMAIVFYELAFH-FNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFS-QSLNNLGVVYTVQG 405 (944)
Q Consensus 335 ~~g~~-------~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~la~~~~~~g 405 (944)
..|++ ++|+..|+++++ ..|++..+|..++.++...|++++|...|+++++..|.++ .+|..++.++.+.|
T Consensus 291 ~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~ 370 (530)
T 2ooe_A 291 EKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAE 370 (530)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHH
T ss_pred hccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhc
Confidence 23444 499999999997 8999999999999999999999999999999999999986 69999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhCCCChhhhhhHHHHhhhccCCChHHHHHH
Q 002273 406 KMDAAAEMIEKAIAANPTYAEAYNNLGVL-YRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEA 483 (944)
Q Consensus 406 ~~~~A~~~l~~al~~~p~~~~a~~~la~~-~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~ 483 (944)
++++|++.|+++++..|.....+...+.+ +...|++++|...|+++++.+|+++.++.++.. .+...|+.+++...
T Consensus 371 ~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~--~~~~~g~~~~Ar~~ 447 (530)
T 2ooe_A 371 GIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYID--YLSHLNEDNNTRVL 447 (530)
T ss_dssp HHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHH--HHTTTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHH--HHHhCCCHhhHHHH
Confidence 99999999999999999887877777766 446999999999999999999999988876433 34455665554433
No 29
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.94 E-value=1.1e-25 Score=250.25 Aligned_cols=254 Identities=11% Similarity=0.053 Sum_probs=205.2
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCcHHHH
Q 002273 184 LKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD-LESAIACYERCLAVSPNFEIAK 262 (944)
Q Consensus 184 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~ 262 (944)
+..+|++..++..+|.++...|++++|+..|+++++++|++..+|+.+|.++..+|+ +++|+..|++++.++|++..++
T Consensus 90 i~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~ 169 (382)
T 2h6f_A 90 IIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW 169 (382)
T ss_dssp ECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHH
Confidence 344566667777777777777777777777777777777777777777777777775 7777777777777777777777
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q 002273 263 NNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMA 342 (944)
Q Consensus 263 ~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 342 (944)
.+++.++..+++ +++|+..|+++++++|++..+|..+|.++...|++++|
T Consensus 170 ~~~g~~~~~~g~------------------------------~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eA 219 (382)
T 2h6f_A 170 HHRRVLVEWLRD------------------------------PSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNE 219 (382)
T ss_dssp HHHHHHHHHHTC------------------------------CTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTH
T ss_pred HHHHHHHHHccC------------------------------HHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHH
Confidence 777776655443 37777777777777888888888888888888999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHH-CCCHHHH-----HHHHHHHHhhCCCCHHHHHHHHHHHHHcC--CHHHHHHHH
Q 002273 343 IVFYELAFHFNPHCAEACNNLGVIYKD-RDNLDKA-----VECYQMALSIKPNFSQSLNNLGVVYTVQG--KMDAAAEMI 414 (944)
Q Consensus 343 ~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A-----~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~l 414 (944)
+.+|+++++++|++..+|+++|.++.. .|..++| +++|+++++++|++..+|++++.++...| ++++|++.+
T Consensus 220 l~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~ 299 (382)
T 2h6f_A 220 LQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQL 299 (382)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHH
Confidence 999999999999999999999999988 5554777 58999999999999999999999999988 689999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcC--------C-HHHHHHHHHHH-HhhCCCChhhhhhHHHH
Q 002273 415 EKAIAANPTYAEAYNNLGVLYRDAG--------S-ISLAIDAYEQC-LKIDPDSRNAGQNRLLA 468 (944)
Q Consensus 415 ~~al~~~p~~~~a~~~la~~~~~~g--------~-~~eA~~~~~~a-l~l~P~~~~a~~~~~~~ 468 (944)
+++ +.+|++..++..+|.+|..+| + +++|+++|+++ ++++|.....+..+...
T Consensus 300 ~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~ 362 (382)
T 2h6f_A 300 LDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRS 362 (382)
T ss_dssp HHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 888 889999999999999999875 2 58999999999 99999988877765433
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.94 E-value=6.6e-25 Score=240.01 Aligned_cols=277 Identities=18% Similarity=0.213 Sum_probs=247.6
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (944)
....++.+|..++..|++++|+.+|+++++.+|++..++..+|.++...|++++|+..++++++.+|++..++..+|.++
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 99 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHH
Confidence 55678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCChhHHhHHH------HHHHHH-HH-HHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH
Q 002273 127 KDEGRLVEAAESYHKALSADPSYKPAAECLA------IVLTDL-GT-SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLG 198 (944)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la------~~~~~l-g~-~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 198 (944)
...|++++|+..++++++..|.+......+. .....+ +. ++...|++++|+..++++++..|.+..++..+|
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 179 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLG 179 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence 9999999999999999999998876543320 011112 33 467789999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhh
Q 002273 199 VVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYG 278 (944)
Q Consensus 199 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~ 278 (944)
.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..|+++++..|++...+..++.++...
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~------ 253 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNM------ 253 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT------
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh------
Confidence 99999999999999999999999999999999999999999999999999999999999999998888876654
Q ss_pred hHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCChHHHHHHH
Q 002273 279 RALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWH------------YADAMYNLGVAYGEMLKFDMAIVFY 346 (944)
Q Consensus 279 ~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~------------~~~~~~~la~~~~~~g~~~~A~~~~ 346 (944)
|++++|+..++++++..|. +..++..++.++...|++++|...+
T Consensus 254 ------------------------g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 309 (327)
T 3cv0_A 254 ------------------------SQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTY 309 (327)
T ss_dssp ------------------------TCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHT
T ss_pred ------------------------ccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 5669999999999999998 7888899999999999999998888
Q ss_pred HHHHhhC
Q 002273 347 ELAFHFN 353 (944)
Q Consensus 347 ~~al~~~ 353 (944)
+++++..
T Consensus 310 ~~~l~~~ 316 (327)
T 3cv0_A 310 AQNVEPF 316 (327)
T ss_dssp TCCSHHH
T ss_pred HHHHHhc
Confidence 8776653
No 31
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.93 E-value=1.7e-24 Score=240.58 Aligned_cols=251 Identities=12% Similarity=0.070 Sum_probs=235.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002273 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ-YDTALGCYEKAALERPMYAEAYCNMGVIY 235 (944)
Q Consensus 157 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~~ 235 (944)
+.++..+|.++...|++++|+..|+++++++|++..+|+.+|.++..+|+ +++|+.+|+++++++|++..+|+.+|.++
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 34578888999999999999999999999999999999999999999997 99999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHH
Q 002273 236 KNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKA 315 (944)
Q Consensus 236 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~a 315 (944)
..+|++++|+..|+++++++|++..++.+++.++..+|+. ++|+..|+++
T Consensus 177 ~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~------------------------------~eAl~~~~~a 226 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLW------------------------------DNELQYVDQL 226 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC------------------------------TTHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCCh------------------------------HHHHHHHHHH
Confidence 9999999999999999999999999999999998776654 9999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHH-cCChHHH-----HHHHHHHHhhCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhhC
Q 002273 316 LYYNWHYADAMYNLGVAYGE-MLKFDMA-----IVFYELAFHFNPHCAEACNNLGVIYKDRD--NLDKAVECYQMALSIK 387 (944)
Q Consensus 316 l~~~p~~~~~~~~la~~~~~-~g~~~~A-----~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~ 387 (944)
++.+|.+..+|+.+|.++.. .|.+++| +.+|++++.++|++..+|++++.++...| ++++|++.++++ +.+
T Consensus 227 l~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~ 305 (382)
T 2h6f_A 227 LKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS 305 (382)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT
T ss_pred HHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC
Confidence 99999999999999999999 5555888 59999999999999999999999999988 699999999998 999
Q ss_pred CCCHHHHHHHHHHHHHcC---------CHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHc
Q 002273 388 PNFSQSLNNLGVVYTVQG---------KMDAAAEMIEKA-IAANPTYAEAYNNLGVLYRDA 438 (944)
Q Consensus 388 p~~~~~~~~la~~~~~~g---------~~~~A~~~l~~a-l~~~p~~~~a~~~la~~~~~~ 438 (944)
|++..++..+|.+|.++| .+++|+++|+++ ++++|.....|..++..+..+
T Consensus 306 p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 306 HSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 999999999999999985 359999999999 999999999999999887654
No 32
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.93 E-value=3.7e-24 Score=245.40 Aligned_cols=381 Identities=15% Similarity=0.078 Sum_probs=281.3
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH---HHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 002273 52 LSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMG---RLAFDSFSEAVKLDPQNACAHTHCGILYKD 128 (944)
Q Consensus 52 ~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 128 (944)
..+|..+++.|++++|+.+|+++.+. +++.+++.+|.++...|++ ++|+..|+++++. ++.+++.+|.++..
T Consensus 7 ~~la~~~~~~g~~~~A~~~~~~aa~~--g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 7 QRLANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--TCCTGGGTCC-------------------------------CHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHh
Confidence 56899999999999999999999876 5778899999999999999 9999999999976 77889999997777
Q ss_pred cC-----CHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChH---HHHHHHHHHHhhCCCCHHHHHHHHHH
Q 002273 129 EG-----RLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQ---DGIQKYYEALKIDPHYAPAYYNLGVV 200 (944)
Q Consensus 129 ~g-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~---~A~~~~~~al~~~p~~~~~~~~la~~ 200 (944)
.+ ++++|+.+|+++++..+. .+ ++.+|.+|...+... ++...+.++.. +.++.+++.+|.+
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~--~A-------~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~--~g~~~a~~~Lg~~ 150 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEG--NT-------LIPLAMLYLQYPHSFPNVNAQQQISQWQA--AGYPEAGLAQVLL 150 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCS--SC-------HHHHHHHHHHCGGGCTTCCHHHHHHHHHH--HTCTTHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCH--HH-------HHHHHHHHHhCCCCCCCHHHHHHHHHHHH--CCCHHHHHHHHHH
Confidence 66 889999999999986543 34 566677776665544 34555555543 3457899999999
Q ss_pred HHHcCCHHHHHHH----HHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhh
Q 002273 201 YSELMQYDTALGC----YEKAALERPMYAEAYCNMGVIYKNRG---DLESAIACYERCLAVSPNFEIAKNNMAIALTDLG 273 (944)
Q Consensus 201 ~~~~g~~~~A~~~----~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~ 273 (944)
|...+.++++... ++.+...+ +.+++.+|.+|...| ++++|+..|+++.+..+.....+++++.++....
T Consensus 151 y~~~~~~~~~~~~a~~~~~~a~~~~---~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~ 227 (452)
T 3e4b_A 151 YRTQGTYDQHLDDVERICKAALNTT---DICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDAT 227 (452)
T ss_dssp HHHHTCGGGGHHHHHHHHHHHTTTC---TTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGG
T ss_pred HHcCCCcccCHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 9999965555444 44444444 449999999999999 9999999999999999999888888888874321
Q ss_pred hhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-H--HHcCChHHHHHHHHHHH
Q 002273 274 TKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA-Y--GEMLKFDMAIVFYELAF 350 (944)
Q Consensus 274 ~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~-~--~~~g~~~~A~~~~~~al 350 (944)
...+++++|+.+|+++. |.++.+++.+|.+ + ...+++++|+.+|+++.
T Consensus 228 --------------------------~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa 278 (452)
T 3e4b_A 228 --------------------------LGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGR 278 (452)
T ss_dssp --------------------------GSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHH
T ss_pred --------------------------CCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 12478899999999998 8899999999999 4 57899999999999998
Q ss_pred hhCCCCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhC
Q 002273 351 HFNPHCAEACNNLGVIYKDRD-----NLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAAN 421 (944)
Q Consensus 351 ~~~p~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~l~~al~~~ 421 (944)
+.. ++.+++++|.+|. .| ++++|+.+|+++. +.++.+++++|.+|.. ..++++|+.+|+++.+
T Consensus 279 ~~g--~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~-- 350 (452)
T 3e4b_A 279 AAD--QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR-- 350 (452)
T ss_dssp HTT--CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--
T ss_pred HCC--CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--
Confidence 654 8999999999998 45 9999999999998 8999999999999887 4499999999999986
Q ss_pred CCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCChhhhhhHHHHhhhccCCChHHHHHHHHHHHHH
Q 002273 422 PTYAEAYNNLGVLYRD----AGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFEAHRDWGKR 490 (944)
Q Consensus 422 p~~~~a~~~la~~~~~----~g~~~eA~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (944)
+.++.+.++||.+|.. ..++.+|..+|+++.+..+. .+...+......+...+..+..+..++|...
T Consensus 351 ~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~--~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 351 NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP--EANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH--HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 4568899999999985 46899999999999987654 3443332222233222333444445555443
No 33
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.92 E-value=6.6e-23 Score=215.66 Aligned_cols=238 Identities=17% Similarity=0.170 Sum_probs=164.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHH
Q 002273 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY-------AEAYC 229 (944)
Q Consensus 157 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~ 229 (944)
+..+..+|.++...|++++|+..|+++++.+ .+..++..+|.++...|++++|+..++++++..|.+ ..++.
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 5568888888899999999999999999888 888899999999999999999999999998887765 68888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHH
Q 002273 230 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGV 309 (944)
Q Consensus 230 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~ 309 (944)
.+|.++...|++++|+..|+++++..|.. .++.. .|++++|+
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~--------~~~~~------------------------------~~~~~~a~ 125 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEHRTA--------DILTK------------------------------LRNAEKEL 125 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCH--------HHHHH------------------------------HHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCchh--------HHHHH------------------------------HhHHHHHH
Confidence 89999999999999999999888887761 12222 22336666
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC
Q 002273 310 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 389 (944)
Q Consensus 310 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 389 (944)
..+++++..+|.+..++..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+.+|+++++.+|+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 205 (258)
T 3uq3_A 126 KKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 205 (258)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH
Confidence 66666666665555556666666666666666666666655555555555555555555555555555555555555555
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHH
Q 002273 390 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN------PTYAEAYNNLGV 433 (944)
Q Consensus 390 ~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~------p~~~~a~~~la~ 433 (944)
++.++..+|.++...|++++|+.+++++++++ |++..++..++.
T Consensus 206 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 206 FVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 55555555555555555555555555555555 555544444443
No 34
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.92 E-value=1.8e-23 Score=222.45 Aligned_cols=243 Identities=17% Similarity=0.146 Sum_probs=189.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH----HHHHHHH
Q 002273 192 PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI----AKNNMAI 267 (944)
Q Consensus 192 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~la~ 267 (944)
+.++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++ .|.+.. ++..++.
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHH
Confidence 45566666666666666666666666666666666666666666666666666666666666 332222 2444444
Q ss_pred HHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 002273 268 ALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYE 347 (944)
Q Consensus 268 ~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 347 (944)
++.. .|++++|+..|+++++.+|.+..++..+|.++...|++++|+..|+
T Consensus 83 ~~~~------------------------------~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 132 (272)
T 3u4t_A 83 ILMK------------------------------KGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYME 132 (272)
T ss_dssp HHHH------------------------------TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHG
T ss_pred HHHH------------------------------cccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 4333 3445777777777777777778888899999999999999999999
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhC---
Q 002273 348 LAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK---MDAAAEMIEKAIAAN--- 421 (944)
Q Consensus 348 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~l~~al~~~--- 421 (944)
++++.+|.++.++..+|......+++++|++.|+++++.+|++..++..+|.++...|+ +++|+..++++++..
T Consensus 133 ~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~ 212 (272)
T 3u4t_A 133 KQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPG 212 (272)
T ss_dssp GGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGG
T ss_pred HHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcc
Confidence 99999999999999999555555699999999999999999999999999999999998 888999999999885
Q ss_pred CC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhhH
Q 002273 422 PT-----YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 465 (944)
Q Consensus 422 p~-----~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~ 465 (944)
|+ ...++..+|.+|...|++++|+++|+++++++|+++.++..+
T Consensus 213 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 261 (272)
T 3u4t_A 213 GAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGL 261 (272)
T ss_dssp GGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHh
Confidence 44 236889999999999999999999999999999998887653
No 35
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.91 E-value=3.5e-23 Score=212.40 Aligned_cols=200 Identities=19% Similarity=0.163 Sum_probs=178.1
Q ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 002273 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (944)
Q Consensus 45 ~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (944)
|.++..++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|+++.++..+|.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHc-----------CCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHH
Q 002273 125 LYKDE-----------GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPA 193 (944)
Q Consensus 125 ~~~~~-----------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 193 (944)
++... |++++|+..|+++++++|++..+ +..+|.++...|++++|+..|+++++++ +++.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~-------~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~ 153 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPL-------HLQRGLVYALLGERDKAEASLKQALALE-DTPEI 153 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHH-------HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHH-------HHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHH
Confidence 99999 99999999999999999998765 7788888999999999999999999999 99999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002273 194 YYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCL 252 (944)
Q Consensus 194 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 252 (944)
+..+|.+|...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++-
T Consensus 154 ~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 154 RSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999998864
No 36
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.91 E-value=1.8e-22 Score=216.87 Aligned_cols=260 Identities=8% Similarity=-0.034 Sum_probs=166.4
Q ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHH
Q 002273 90 ICLQMQNMGRLAFDSFSEAVKLDPQN-ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLK 168 (944)
Q Consensus 90 ~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~ 168 (944)
...+..|+|++|+..+++....+|++ .+....++.+|..+|++++|+..++.. +|. . ..++..++..+.
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~---~~~---~----~~a~~~la~~~~ 76 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS---SAP---E----LQAVRMFAEYLA 76 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT---SCH---H----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc---CCh---h----HHHHHHHHHHHc
Confidence 34567788888888887776666665 356677788888888888888766441 221 1 234566777777
Q ss_pred HcCChHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002273 169 LAGNTQDGIQKYYEALKI--DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIA 246 (944)
Q Consensus 169 ~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 246 (944)
..++.++|++.+++++.. +|+++.+++.+|.++...|++++|++.+++ |.+.+++..+|.++..+|++++|++
T Consensus 77 ~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~~g~~~~A~~ 151 (291)
T 3mkr_A 77 SHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLKLDRLDLARK 151 (291)
T ss_dssp CSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 888888888888888765 588889999999999999999999999887 7888999999999999999999999
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 002273 247 CYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAM 326 (944)
Q Consensus 247 ~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~ 326 (944)
.|+++++.+|++.... ++..+..+ +...|++++|+..|+++++..|+++.++
T Consensus 152 ~l~~~~~~~p~~~~~~--l~~a~~~l--------------------------~~~~~~~~eA~~~~~~~l~~~p~~~~~~ 203 (291)
T 3mkr_A 152 ELKKMQDQDEDATLTQ--LATAWVSL--------------------------AAGGEKLQDAYYIFQEMADKCSPTLLLL 203 (291)
T ss_dssp HHHHHHHHCTTCHHHH--HHHHHHHH--------------------------HHCTTHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHhhCcCcHHHH--HHHHHHHH--------------------------HhCchHHHHHHHHHHHHHHhCCCcHHHH
Confidence 9999999888764322 22111111 1112334444444444444444444444
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHH-HHHHHHHHHhhCCCCHH
Q 002273 327 YNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK-AVECYQMALSIKPNFSQ 392 (944)
Q Consensus 327 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~p~~~~ 392 (944)
+.+|.++...|++++|+..|+++++.+|+++.++.++|.++...|+.++ +.++++++++++|+++.
T Consensus 204 ~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~ 270 (291)
T 3mkr_A 204 NGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPF 270 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChH
Confidence 4444444444444444444444444444444444444444444444433 23444444444444443
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.91 E-value=9.7e-23 Score=214.39 Aligned_cols=236 Identities=18% Similarity=0.195 Sum_probs=217.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------HHHH
Q 002273 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNF-------EIAK 262 (944)
Q Consensus 190 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~ 262 (944)
.+..+..+|.++...|++++|+.+|+++++.+ .++.++..+|.++...|++++|+..++++++..|++ ...+
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 46789999999999999999999999999999 889999999999999999999999999999998876 4556
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q 002273 263 NNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMA 342 (944)
Q Consensus 263 ~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 342 (944)
..++.++. ..|++++|+..+++++...|. +.++...|++++|
T Consensus 83 ~~l~~~~~------------------------------~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a 124 (258)
T 3uq3_A 83 ARIGNAYH------------------------------KLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKE 124 (258)
T ss_dssp HHHHHHHH------------------------------HTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHH
T ss_pred HHHHHHHH------------------------------HcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHH
Confidence 66665544 456779999999999999887 5677788899999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 002273 343 IVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 422 (944)
Q Consensus 343 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p 422 (944)
+..+++++..+|.+..++..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+.+++++++.+|
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~ 204 (258)
T 3uq3_A 125 LKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP 204 (258)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CCChhhhhh
Q 002273 423 TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID------PDSRNAGQN 464 (944)
Q Consensus 423 ~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~------P~~~~a~~~ 464 (944)
+++.++..+|.++...|++++|+.+|+++++++ |++..+...
T Consensus 205 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~ 252 (258)
T 3uq3_A 205 NFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQL 252 (258)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHH
Confidence 999999999999999999999999999999999 776665543
No 38
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.91 E-value=6.2e-23 Score=218.23 Aligned_cols=258 Identities=15% Similarity=0.144 Sum_probs=145.1
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC----HHHHHHHH
Q 002273 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN----ACAHTHCG 123 (944)
Q Consensus 48 ~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la 123 (944)
++.++..|..++..|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++ .|.+ ..++..+|
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHH
Confidence 445566666666666666666666666666666666666666666666666666666666665 2222 22355566
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002273 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE 203 (944)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 203 (944)
.++...|++++|+..|+++++.+|.+... +..+|.++...|++++|+..|+++++.+|.+..+++.+|...+.
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-------~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 154 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDTTRLDM-------YGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY 154 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCTHH-------HHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCcccHHH-------HHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH
Confidence 66666666666666666666655555432 55555555555555555555555555555555555555533333
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhH
Q 002273 204 LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD---LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRA 280 (944)
Q Consensus 204 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a 280 (944)
.+++++|+..|+++++.+|++..++..+|.++...++ +++|+..|+++++.....+...
T Consensus 155 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~------------------ 216 (272)
T 3u4t_A 155 NKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY------------------ 216 (272)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG------------------
T ss_pred HHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc------------------
Confidence 3455555555555555555555555555555555555 5555555555544331111000
Q ss_pred HHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHH
Q 002273 281 LLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEAC 360 (944)
Q Consensus 281 ~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 360 (944)
......++..+|.+|...|++++|+.+|+++++++|+++.++
T Consensus 217 --------------------------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 258 (272)
T 3u4t_A 217 --------------------------------------KDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAI 258 (272)
T ss_dssp --------------------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred --------------------------------------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHH
Confidence 000124566677777777777777777777777777777776
Q ss_pred HHHHHHHHH
Q 002273 361 NNLGVIYKD 369 (944)
Q Consensus 361 ~~la~~~~~ 369 (944)
..++.+...
T Consensus 259 ~~l~~~~~~ 267 (272)
T 3u4t_A 259 DGLKMKLEH 267 (272)
T ss_dssp HHHC-----
T ss_pred HHhhhhhcc
Confidence 666655443
No 39
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.91 E-value=7.9e-23 Score=209.80 Aligned_cols=211 Identities=21% Similarity=0.174 Sum_probs=155.7
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 002273 188 PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAI 267 (944)
Q Consensus 188 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 267 (944)
|.++.+++.+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++.+|++..++..++.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 66788899999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q 002273 268 ALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYE 347 (944)
Q Consensus 268 ~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 347 (944)
++...+.. .+. .....|++++|+..|+
T Consensus 82 ~~~~~~~~--------------------------~~~---------------------------~~~~~g~~~~A~~~~~ 108 (217)
T 2pl2_A 82 AYVALYRQ--------------------------AED---------------------------RERGKGYLEQALSVLK 108 (217)
T ss_dssp HHHHHHHT--------------------------CSS---------------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHhhhh--------------------------hhh---------------------------hcccccCHHHHHHHHH
Confidence 87665321 000 1123466777777777
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 002273 348 LAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA 427 (944)
Q Consensus 348 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a 427 (944)
++++++|+++.++..+|.++...|++++|+..|+++++++ +++.++.++|.++...|++++|+..|+++++.+|+++.+
T Consensus 109 ~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~ 187 (217)
T 2pl2_A 109 DAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDL 187 (217)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH
Confidence 7777777777777777777777777777777777777777 777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 002273 428 YNNLGVLYRDAGSISLAIDAYEQCL 452 (944)
Q Consensus 428 ~~~la~~~~~~g~~~eA~~~~~~al 452 (944)
+..+|.++...|++++|+..|+++-
T Consensus 188 ~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 188 RVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHTC---------------
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHh
Confidence 7777777777777777777777653
No 40
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.91 E-value=1.2e-23 Score=237.45 Aligned_cols=208 Identities=19% Similarity=0.187 Sum_probs=165.6
Q ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc------CCCC
Q 002273 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN----VEAHIGKGICLQMQNMGRLAFDSFSEAVKL------DPQN 115 (944)
Q Consensus 46 ~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~ 115 (944)
.....++..|..++..|++++|+.+|+++++..|++ ..++..+|.++...|++++|+..+++++++ .|..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 467789999999999999999999999999999998 468899999999999999999999999876 3445
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCC--------------------hHH
Q 002273 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN--------------------TQD 175 (944)
Q Consensus 116 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~--------------------~~~ 175 (944)
..++..+|.++...|++++|+..++++++..+.... ....+.++..+|.++...|+ +++
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND-KVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 678999999999999999999999999998765332 23446678888888888888 888
Q ss_pred HHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHH
Q 002273 176 GIQKYYEALKI------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA------EAYCNMGVIYKNRGDLES 243 (944)
Q Consensus 176 A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~ 243 (944)
|+..++++++. .+....++..+|.+|...|++++|+.+++++++..+... .++..+|.++...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 88888887765 223345677777777777777777777777776544322 266667777777777777
Q ss_pred HHHHHHHHHHh
Q 002273 244 AIACYERCLAV 254 (944)
Q Consensus 244 A~~~~~~al~~ 254 (944)
|+.++++++..
T Consensus 246 A~~~~~~al~~ 256 (406)
T 3sf4_A 246 ASEYYKKTLLL 256 (406)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777666654
No 41
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.91 E-value=2e-22 Score=216.53 Aligned_cols=260 Identities=12% Similarity=0.008 Sum_probs=230.5
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q 002273 166 SLKLAGNTQDGIQKYYEALKIDPHY-APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA 244 (944)
Q Consensus 166 ~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 244 (944)
..+..|++++|+..+++....+|++ .+....++.+|..+|++++|+..++. .+|....++..++..+...++.++|
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~~A 84 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRDAI 84 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHHHH
Confidence 3456799999999999887777776 46778899999999999999998866 2555677888999999999999999
Q ss_pred HHHHHHHHHh--CCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCC
Q 002273 245 IACYERCLAV--SPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHY 322 (944)
Q Consensus 245 ~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~ 322 (944)
++.+++++.. +|++...+..++.++... |++++|+..+++ |.+
T Consensus 85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~------------------------------g~~~~Al~~l~~-----~~~ 129 (291)
T 3mkr_A 85 VAELDREMSRSVDVTNTTFLLMAASIYFYD------------------------------QNPDAALRTLHQ-----GDS 129 (291)
T ss_dssp HHHHHHHHHSCCCCSCHHHHHHHHHHHHHT------------------------------TCHHHHHHHHTT-----CCS
T ss_pred HHHHHHHHhcccCCCCHHHHHHHHHHHHHC------------------------------CCHHHHHHHHhC-----CCC
Confidence 9999999876 599999998888886654 566999999988 889
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHH--HHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 002273 323 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLG--VIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV 400 (944)
Q Consensus 323 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la--~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 400 (944)
..++..+|.++..+|++++|++.|+++++.+|++.......+ .++...|++++|+..|+++++..|+++.+++++|.+
T Consensus 130 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~ 209 (291)
T 3mkr_A 130 LECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAAC 209 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 999999999999999999999999999999999865544434 444456899999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHhhCCCChhhhh
Q 002273 401 YTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL-AIDAYEQCLKIDPDSRNAGQ 463 (944)
Q Consensus 401 ~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~e-A~~~~~~al~l~P~~~~a~~ 463 (944)
+..+|++++|+..|+++++.+|++++++.++|.++...|+..+ +.++++++++++|+++.+..
T Consensus 210 ~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d 273 (291)
T 3mkr_A 210 HMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE 273 (291)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 9999999999999999999999999999999999999999976 57899999999999986653
No 42
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.90 E-value=3.6e-23 Score=233.68 Aligned_cols=305 Identities=24% Similarity=0.261 Sum_probs=227.9
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhH
Q 002273 80 GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA----CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAEC 155 (944)
Q Consensus 80 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 155 (944)
.....++.+|.++...|++++|+..|+++++..|+++ .++..+|.++...|++++|+..+++++...+.... ...
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD-QLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc-cHH
Confidence 4567788888888888888888888888888888874 56788888888888888888888888877544322 233
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCC--------------------HHH
Q 002273 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY------APAYYNLGVVYSELMQ--------------------YDT 209 (944)
Q Consensus 156 la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~--------------------~~~ 209 (944)
.+.++..+|.++...|++++|+..++++++..+.. ..++..+|.+|...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 46677778888888888888888888887765432 4477777778877777 777
Q ss_pred HHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHH
Q 002273 210 ALGCYEKAALE------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLL 283 (944)
Q Consensus 210 A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~ 283 (944)
|+..++++++. .+....++..+|.++...|++++|+.+++++++..+......
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------------------- 224 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKA--------------------- 224 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHH---------------------
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcH---------------------
Confidence 77777777664 222345667777777777777777777777766543211100
Q ss_pred HhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------H
Q 002273 284 FRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC------A 357 (944)
Q Consensus 284 ~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~ 357 (944)
....++..+|.++...|++++|+.++++++.+.+.. .
T Consensus 225 -------------------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 267 (406)
T 3sf4_A 225 -------------------------------------AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 267 (406)
T ss_dssp -------------------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred -------------------------------------HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHH
Confidence 013467788888888888888888888888876554 6
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCH
Q 002273 358 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNF------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP------TYA 425 (944)
Q Consensus 358 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p------~~~ 425 (944)
.++..+|.++...|++++|+.+|++++++.+.. ..++..+|.++...|++++|+.++++++++.+ ...
T Consensus 268 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 347 (406)
T 3sf4_A 268 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGEL 347 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchh
Confidence 788888999999999999999999988875433 56888899999999999999999999888732 336
Q ss_pred HHHHHHHHHHHHcCCHHH
Q 002273 426 EAYNNLGVLYRDAGSISL 443 (944)
Q Consensus 426 ~a~~~la~~~~~~g~~~e 443 (944)
.++..+|.++...|+...
T Consensus 348 ~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 348 TARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHhhHhHH
Confidence 778888888888887643
No 43
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.89 E-value=2.7e-22 Score=227.36 Aligned_cols=290 Identities=23% Similarity=0.265 Sum_probs=240.0
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCH
Q 002273 156 LAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYA----PAYYNLGVVYSELMQYDTALGCYEKAALE------RPMYA 225 (944)
Q Consensus 156 la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~ 225 (944)
.+..+..+|..+...|++++|+..|+++++..|++. .++..+|.+|...|++++|+.+++++++. .+...
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 355677899999999999999999999999999986 58999999999999999999999999987 46667
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHh
Q 002273 226 EAYCNMGVIYKNRGDLESAIACYERCLAV------SPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELV 299 (944)
Q Consensus 226 ~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~ 299 (944)
.++..+|.++...|++++|+..|+++++. .+....++..++.++...++... ......+. -
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-------~~~~~~~~------~ 193 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLG-------QRNPGKFG------D 193 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHH-------HHSTTCCC------H
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccc-------cccchhhh------h
Confidence 89999999999999999999999999988 44455677777777777665000 00000000 0
Q ss_pred hhcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------HHHHHHHHHHH
Q 002273 300 KLEGDINQGVAYYKKALYYN------WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC------AEACNNLGVIY 367 (944)
Q Consensus 300 ~~~~~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~ 367 (944)
.....+++|+.+++++++.. +....++..+|.++...|++++|+.++++++++.+.. ..++..+|.++
T Consensus 194 ~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 273 (411)
T 4a1s_A 194 DVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSH 273 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 00112588888888887753 2235689999999999999999999999999986543 33899999999
Q ss_pred HHCCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHH
Q 002273 368 KDRDNLDKAVECYQMALSIKPNF------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY------AEAYNNLGVLY 435 (944)
Q Consensus 368 ~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~------~~a~~~la~~~ 435 (944)
...|++++|+.+|++++++.+.. ..++..+|.++...|++++|+.+++++++..+.. ..++..+|.+|
T Consensus 274 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 353 (411)
T 4a1s_A 274 IFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAH 353 (411)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Confidence 99999999999999999987644 6789999999999999999999999999885432 56899999999
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCC
Q 002273 436 RDAGSISLAIDAYEQCLKIDPDS 458 (944)
Q Consensus 436 ~~~g~~~eA~~~~~~al~l~P~~ 458 (944)
...|++++|+++|++++++.+..
T Consensus 354 ~~~g~~~~A~~~~~~al~~~~~~ 376 (411)
T 4a1s_A 354 SAIGGHERALKYAEQHLQLAXXX 376 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCHH
T ss_pred HHhccHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999998753
No 44
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.89 E-value=6.4e-22 Score=216.48 Aligned_cols=290 Identities=23% Similarity=0.250 Sum_probs=231.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHH
Q 002273 159 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY----APAYYNLGVVYSELMQYDTALGCYEKAALE------RPMYAEAY 228 (944)
Q Consensus 159 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~ 228 (944)
.+...|..+...|++++|+..|+++++..|++ ..++..+|.++...|++++|+.+++++++. .+....++
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 46778999999999999999999999999998 468889999999999999999999999876 34456789
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhc
Q 002273 229 CNMGVIYKNRGDLESAIACYERCLAVSPNFE------IAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLE 302 (944)
Q Consensus 229 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~ 302 (944)
..+|.++...|++++|+..++++++..+... ..+..++.++...++.... ..............
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----------~~~~~~~~~~~~a~ 156 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGC----------PGPQDTGEFPEDVR 156 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSS----------SSCC----CCHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCccccc----------chhhhhhhhhhhHH
Confidence 9999999999999999999999998765432 2566666666665541000 00000000000011
Q ss_pred CCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHC
Q 002273 303 GDINQGVAYYKKALYY------NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC------AEACNNLGVIYKDR 370 (944)
Q Consensus 303 ~~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~ 370 (944)
..+++|+..+++++.. .+....++..+|.++...|++++|+.+++++++..+.. ..++..+|.++...
T Consensus 157 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~ 236 (338)
T 3ro2_A 157 NALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFL 236 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHc
Confidence 1268888888888765 22335689999999999999999999999999875432 34899999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHc
Q 002273 371 DNLDKAVECYQMALSIKPNF------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY------AEAYNNLGVLYRDA 438 (944)
Q Consensus 371 g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~------~~a~~~la~~~~~~ 438 (944)
|++++|+.++++++++.+.. ..++..+|.++...|++++|+.+++++++..+.. ..++..+|.+|...
T Consensus 237 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~ 316 (338)
T 3ro2_A 237 GEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTAL 316 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHc
Confidence 99999999999999886654 6789999999999999999999999999875432 56889999999999
Q ss_pred CCHHHHHHHHHHHHhhCCCC
Q 002273 439 GSISLAIDAYEQCLKIDPDS 458 (944)
Q Consensus 439 g~~~eA~~~~~~al~l~P~~ 458 (944)
|++++|..+|++++++.++.
T Consensus 317 g~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 317 GNHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp TCHHHHHHHHHHHHHC----
T ss_pred CChHHHHHHHHHHHHHHHhh
Confidence 99999999999999988764
No 45
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.88 E-value=2e-21 Score=202.56 Aligned_cols=220 Identities=18% Similarity=0.202 Sum_probs=187.2
Q ss_pred CCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 002273 43 LKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHC 122 (944)
Q Consensus 43 ~~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 122 (944)
.....+..++.+|..++..|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++.+|.+..++..+
T Consensus 18 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 97 (243)
T 2q7f_A 18 GSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGA 97 (243)
T ss_dssp ------------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHH
Confidence 34457788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 002273 123 GILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYS 202 (944)
Q Consensus 123 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 202 (944)
|.++...|++++|+..++++++..|.+... +..+|.++...|++++|+..++++++..|++..++..+|.++.
T Consensus 98 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 170 (243)
T 2q7f_A 98 GNVYVVKEMYKEAKDMFEKALRAGMENGDL-------FYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLA 170 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTCCSHHH-------HHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 999999999999999999999999988664 7778888999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 002273 203 ELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 269 (944)
Q Consensus 203 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l 269 (944)
..|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++.+|++..++..++.+.
T Consensus 171 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 171 NEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLG 237 (243)
T ss_dssp HHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC--
T ss_pred HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998887776544
No 46
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.88 E-value=1.4e-21 Score=213.84 Aligned_cols=207 Identities=19% Similarity=0.192 Sum_probs=165.6
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc------CCCCH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGN----VEAHIGKGICLQMQNMGRLAFDSFSEAVKL------DPQNA 116 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~ 116 (944)
+...++..|..++..|++++|+..|+++++..|++ ..++..+|.++...|++++|+..++++++. .+...
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 45678899999999999999999999999999998 478889999999999999999999999886 34456
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCC--------------------hHHH
Q 002273 117 CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN--------------------TQDG 176 (944)
Q Consensus 117 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~--------------------~~~A 176 (944)
.++..+|.++...|++++|+..++++++..+..... ...+.++..+|.++...|+ +++|
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK-VGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 789999999999999999999999999886654332 3346678888889988888 8888
Q ss_pred HHHHHHHHhh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHH
Q 002273 177 IQKYYEALKI------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY------AEAYCNMGVIYKNRGDLESA 244 (944)
Q Consensus 177 ~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A 244 (944)
+..++++++. .+....++..+|.++...|++++|+.+++++++..+.. ..++..+|.++...|++++|
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 8888887765 22234567777888888888888888888777654321 23666777777777777777
Q ss_pred HHHHHHHHHh
Q 002273 245 IACYERCLAV 254 (944)
Q Consensus 245 ~~~~~~al~~ 254 (944)
+..+++++..
T Consensus 243 ~~~~~~al~~ 252 (338)
T 3ro2_A 243 SEYYKKTLLL 252 (338)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777776654
No 47
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.88 E-value=1.6e-21 Score=223.54 Aligned_cols=354 Identities=17% Similarity=0.099 Sum_probs=262.7
Q ss_pred ChHHHHHHHHHHHhCCCH---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHhcCCCCHHH
Q 002273 47 EGKDALSYANILRSRNKF---VDALALYEIVLEKDSGNVEAHIGKGICLQMQN-----MGRLAFDSFSEAVKLDPQNACA 118 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~---~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~p~~~~~ 118 (944)
++++++.+|.++...|++ ++|+.+|+++++. ++.+++.+|.++...+ ++++|+.+|+++++. .++.+
T Consensus 34 ~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~--g~~~A 108 (452)
T 3e4b_A 34 YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFAN--GEGNT 108 (452)
T ss_dssp CCTGGGTCC-------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHT--TCSSC
T ss_pred CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHC--CCHHH
Confidence 455677788888888888 9999999999976 7889999999777665 889999999999985 45568
Q ss_pred HHHHHHHHHHcCCHHH---HHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHH----HHHHHHhhCCCCH
Q 002273 119 HTHCGILYKDEGRLVE---AAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQ----KYYEALKIDPHYA 191 (944)
Q Consensus 119 ~~~la~~~~~~g~~~~---A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~----~~~~al~~~p~~~ 191 (944)
++.+|.+|...+...+ +.+.+.++.... +.. +.+.+|.++...+.+++++. +++.+...+|
T Consensus 109 ~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g--~~~-------a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~--- 176 (452)
T 3e4b_A 109 LIPLAMLYLQYPHSFPNVNAQQQISQWQAAG--YPE-------AGLAQVLLYRTQGTYDQHLDDVERICKAALNTTD--- 176 (452)
T ss_dssp HHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT--CTT-------HHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCT---
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC--CHH-------HHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCH---
Confidence 9999999998876554 444555544332 233 36778888888885555444 4555444444
Q ss_pred HHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCcHHHHHH
Q 002273 192 PAYYNLGVVYSELM---QYDTALGCYEKAALERPMYAEAYCNMGVIYKNR----GDLESAIACYERCLAVSPNFEIAKNN 264 (944)
Q Consensus 192 ~~~~~la~~~~~~g---~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~p~~~~~~~~ 264 (944)
.+++.+|.+|...| ++++|+.+|+++.+..+.....++.+|.+|... +++++|+.+|+++. |+++.++.+
T Consensus 177 ~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~ 253 (452)
T 3e4b_A 177 ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVS 253 (452)
T ss_dssp THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHH
T ss_pred HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHH
Confidence 49999999999999 999999999999999999999999999999776 79999999999997 899999999
Q ss_pred HHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----Ch
Q 002273 265 MAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEML-----KF 339 (944)
Q Consensus 265 la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-----~~ 339 (944)
++.++... ...+++++|+.+|+++.+. .++.+++.+|.+|. .| ++
T Consensus 254 Lg~~~~~~---------------------------~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~ 303 (452)
T 3e4b_A 254 LAQLLYDF---------------------------PELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADA 303 (452)
T ss_dssp HHHHHHHS---------------------------GGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCH
T ss_pred HHHHHHhC---------------------------CCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCH
Confidence 99885421 1257889999999999865 48999999999998 55 99
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHH
Q 002273 340 DMAIVFYELAFHFNPHCAEACNNLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAA 411 (944)
Q Consensus 340 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~ 411 (944)
++|+.+|+++. +.++.+++++|.+|.. ..++++|+.+|+++.+ +.++.+.+++|.+|.. ..++++|.
T Consensus 304 ~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~ 378 (452)
T 3e4b_A 304 KAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAY 378 (452)
T ss_dssp HHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHH
T ss_pred HHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHH
Confidence 99999999999 8899999999999987 4599999999999987 4568899999999985 56999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhCCC
Q 002273 412 EMIEKAIAANPTYAEAYNNLGVLYRDA--GSISLAIDAYEQCLKIDPD 457 (944)
Q Consensus 412 ~~l~~al~~~p~~~~a~~~la~~~~~~--g~~~eA~~~~~~al~l~P~ 457 (944)
.+|+++.+..+ ..+...++.+...+ ++..+|....++..+..++
T Consensus 379 ~~~~~A~~~g~--~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~~~~ 424 (452)
T 3e4b_A 379 VFSQLAKAQDT--PEANDLATQLEAPLTPAQRAEGQRLVQQELAARGT 424 (452)
T ss_dssp HHHHHHHTTCC--HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCC--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccc
Confidence 99999987654 56666676665433 3566777777766665443
No 48
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.88 E-value=6.7e-22 Score=224.13 Aligned_cols=286 Identities=21% Similarity=0.195 Sum_probs=229.5
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHh
Q 002273 79 SGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA----CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAE 154 (944)
Q Consensus 79 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 154 (944)
+.....++.+|..+...|++++|+..|+++++..|+++ .++..+|.++...|++++|+..|+++++....... ..
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~ 123 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMND-RL 123 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-HH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccC-ch
Confidence 34566778899999999999999999999999999886 57888999999999999999999999887543322 24
Q ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCC-----------------HHHHH
Q 002273 155 CLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI------DPHYAPAYYNLGVVYSELMQ-----------------YDTAL 211 (944)
Q Consensus 155 ~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~-----------------~~~A~ 211 (944)
..+.++..+|.++...|++++|+..|+++++. .+....++..+|.+|...|+ +++|+
T Consensus 124 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~ 203 (411)
T 4a1s_A 124 GEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAV 203 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHH
Confidence 45677888889999999999999999888887 45556788888888888888 88888
Q ss_pred HHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHh
Q 002273 212 GCYEKAALER------PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFR 285 (944)
Q Consensus 212 ~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~ 285 (944)
.+++++++.. +....++..+|.++...|++++|+.+++++++..+......
T Consensus 204 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------------------- 260 (411)
T 4a1s_A 204 EFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA----------------------- 260 (411)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH-----------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH-----------------------
Confidence 8888887653 22345777888888888888888888888777644311000
Q ss_pred hcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------HHH
Q 002273 286 LNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC------AEA 359 (944)
Q Consensus 286 ~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~ 359 (944)
....++..+|.++...|++++|+.++++++...+.. ..+
T Consensus 261 -----------------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 305 (411)
T 4a1s_A 261 -----------------------------------AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQS 305 (411)
T ss_dssp -----------------------------------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -----------------------------------HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 013467888999999999999999999998886643 678
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002273 360 CNNLGVIYKDRDNLDKAVECYQMALSIKPN------FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 423 (944)
Q Consensus 360 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 423 (944)
+..+|.++...|++++|+.++++++++.+. ...++..+|.+|...|++++|+.++++++++.+.
T Consensus 306 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 306 CYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 889999999999999999999999987543 2458899999999999999999999999998765
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.87 E-value=6.1e-21 Score=198.81 Aligned_cols=207 Identities=22% Similarity=0.262 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 002273 192 PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTD 271 (944)
Q Consensus 192 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~ 271 (944)
..++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++..|++..
T Consensus 24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~----------- 92 (243)
T 2q7f_A 24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAAT----------- 92 (243)
T ss_dssp ------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----------
T ss_pred HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchH-----------
Confidence 345555555555555555555555555555555555555555555555555555555555544444333
Q ss_pred hhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 002273 272 LGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFH 351 (944)
Q Consensus 272 ~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 351 (944)
++..+|.++...|++++|+..++++++
T Consensus 93 -----------------------------------------------------~~~~la~~~~~~~~~~~A~~~~~~~~~ 119 (243)
T 2q7f_A 93 -----------------------------------------------------AYYGAGNVYVVKEMYKEAKDMFEKALR 119 (243)
T ss_dssp -----------------------------------------------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----------------------------------------------------HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 333333333444444444444444444
Q ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 002273 352 FNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 431 (944)
Q Consensus 352 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~l 431 (944)
..|.+..++..+|.++...|++++|+..++++++..|++..++..+|.++...|++++|+..++++++..|++..++..+
T Consensus 120 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 199 (243)
T 2q7f_A 120 AGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNA 199 (243)
T ss_dssp HTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 44444444444444444444444444444444444444444444444444444444444444444444444444444444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCChhhh
Q 002273 432 GVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 462 (944)
Q Consensus 432 a~~~~~~g~~~eA~~~~~~al~l~P~~~~a~ 462 (944)
|.++...|++++|+.+|+++++++|++..++
T Consensus 200 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 230 (243)
T 2q7f_A 200 GVTYAYKENREKALEMLDKAIDIQPDHMLAL 230 (243)
T ss_dssp HHHHHHTTCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHccCcchHHHH
Confidence 4444444444444444444444444444433
No 50
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.87 E-value=7.2e-20 Score=194.95 Aligned_cols=236 Identities=21% Similarity=0.306 Sum_probs=198.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHHHH
Q 002273 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN----RGDLESAIACYERCLAVSPNFEIAK 262 (944)
Q Consensus 187 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~ 262 (944)
+|.++.+++.+|.++...|++++|+.+|+++++ ++++.+++.+|.++.. .+++++|+.+|+++++.. +..++
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~ 77 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC 77 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence 466777888888888888888888888888887 6677888888888888 888888888888888774 66777
Q ss_pred HHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCC
Q 002273 263 NNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE----MLK 338 (944)
Q Consensus 263 ~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~ 338 (944)
..++.++..-. ...+++++|+.+|+++++. .++.++..+|.+|.. .++
T Consensus 78 ~~lg~~~~~g~--------------------------~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~ 129 (273)
T 1ouv_A 78 HLLGNLYYSGQ--------------------------GVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRD 129 (273)
T ss_dssp HHHHHHHHHTS--------------------------SSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCC
T ss_pred HHHHHHHhCCC--------------------------CcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccC
Confidence 77776654410 0145668888888888876 378899999999999 999
Q ss_pred hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHH
Q 002273 339 FDMAIVFYELAFHFNPHCAEACNNLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAA 410 (944)
Q Consensus 339 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A 410 (944)
+++|+.+|+++++.+ +..++..+|.++.. .+++++|+.+|+++++. +++.+++.+|.+|.. .+++++|
T Consensus 130 ~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A 205 (273)
T 1ouv_A 130 FKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEA 205 (273)
T ss_dssp HHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHH
T ss_pred HHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHH
Confidence 999999999999876 68899999999999 99999999999999987 468899999999999 9999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCChh
Q 002273 411 AEMIEKAIAANPTYAEAYNNLGVLYRD----AGSISLAIDAYEQCLKIDPDSRN 460 (944)
Q Consensus 411 ~~~l~~al~~~p~~~~a~~~la~~~~~----~g~~~eA~~~~~~al~l~P~~~~ 460 (944)
+.+|+++++..| +.+++.+|.+|.. .+++++|+++|++++++.|++..
T Consensus 206 ~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~ 257 (273)
T 1ouv_A 206 LARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGAC 257 (273)
T ss_dssp HHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHH
Confidence 999999999866 8899999999999 99999999999999999987543
No 51
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.87 E-value=4e-20 Score=194.05 Aligned_cols=209 Identities=16% Similarity=0.105 Sum_probs=198.9
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 002273 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (944)
Q Consensus 48 ~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (944)
+..++.+|..+...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++.+|.+..++..+|.++.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHH--cCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 002273 128 DEGRLVEAAESYHKALS--ADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM 205 (944)
Q Consensus 128 ~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 205 (944)
..|++++|+..++++++ ..|.+. .++..+|.++...|++++|+..|+++++..|.+..++..+|.++...|
T Consensus 117 ~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g 189 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQDTLYPERS-------RVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKER 189 (252)
T ss_dssp HTTCHHHHHHHHHHHTTCTTCTTHH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT
T ss_pred HHhHHHHHHHHHHHHHhCccCcccH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcC
Confidence 99999999999999999 555543 357888999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Q 002273 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKN 263 (944)
Q Consensus 206 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 263 (944)
++++|+..++++++..|.+...+..++.++...|++++|...++++++..|++.....
T Consensus 190 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 190 EYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp CHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred CHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999887654
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.86 E-value=4e-19 Score=189.13 Aligned_cols=229 Identities=21% Similarity=0.273 Sum_probs=124.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCC
Q 002273 113 PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKL----AGNTQDGIQKYYEALKIDP 188 (944)
Q Consensus 113 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p 188 (944)
|+++.+++.+|.++...|++++|+.+|+++++ +++.. ++..+|.++.. .+++++|+.+|+++++.+
T Consensus 3 ~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~-------a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~- 72 (273)
T 1ouv_A 3 EQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENS-------GCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN- 72 (273)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHH-------HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHH-------HHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-
Confidence 34444444444444444444444444444444 22222 23344444444 444555555555544442
Q ss_pred CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCcHH
Q 002273 189 HYAPAYYNLGVVYSE----LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN----RGDLESAIACYERCLAVSPNFEI 260 (944)
Q Consensus 189 ~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~ 260 (944)
++.+++.+|.+|.. .+++++|+.+|+++++. +++.++..+|.+|.. .+++++|+.+|+++++..
T Consensus 73 -~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----- 144 (273)
T 1ouv_A 73 -YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN----- 144 (273)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-----
T ss_pred -CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC-----
Confidence 45555555555555 55555555555555554 245555555555555 555555555555554432
Q ss_pred HHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----c
Q 002273 261 AKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE----M 336 (944)
Q Consensus 261 ~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~ 336 (944)
+..++..+|.++.. .
T Consensus 145 -------------------------------------------------------------~~~a~~~lg~~~~~~~~~~ 163 (273)
T 1ouv_A 145 -------------------------------------------------------------DGDGCTILGSLYDAGRGTP 163 (273)
T ss_dssp -------------------------------------------------------------CHHHHHHHHHHHHHTSSSC
T ss_pred -------------------------------------------------------------cHHHHHHHHHHHHcCCCCC
Confidence 23344445555555 5
Q ss_pred CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHH
Q 002273 337 LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD----RDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMD 408 (944)
Q Consensus 337 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~ 408 (944)
+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++++..+ +.+++.+|.+|.. .++++
T Consensus 164 ~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~ 239 (273)
T 1ouv_A 164 KDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEK 239 (273)
T ss_dssp CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCST
T ss_pred CCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHH
Confidence 5566666666665554 235566666666666 6666666666666666544 5666666666666 66666
Q ss_pred HHHHHHHHHHHhCCCC
Q 002273 409 AAAEMIEKAIAANPTY 424 (944)
Q Consensus 409 ~A~~~l~~al~~~p~~ 424 (944)
+|+++|+++++..|++
T Consensus 240 ~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 240 QAIENFKKGCKLGAKG 255 (273)
T ss_dssp THHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHcCCHH
Confidence 6777777666666543
No 53
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.86 E-value=1.1e-20 Score=200.92 Aligned_cols=247 Identities=17% Similarity=0.146 Sum_probs=204.6
Q ss_pred HHHcCChHHHHHHHHHHHhhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q 002273 167 LKLAGNTQDGIQKYYEALKID----PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLE 242 (944)
Q Consensus 167 ~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 242 (944)
+...|++++|+..|+++++.. |.++.+++.+|.++...|++++|+..|+++++.+|.+..++..+|.++...|+++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence 334578999999999999873 4567889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCC
Q 002273 243 SAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHY 322 (944)
Q Consensus 243 ~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~ 322 (944)
+|+..|+++++.+|++..++..++.++... |++++|+..++++++..|++
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~------------------------------g~~~~A~~~~~~a~~~~~~~ 144 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYG------------------------------GRDKLAQDDLLAFYQDDPND 144 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHT------------------------------TCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHh------------------------------ccHHHHHHHHHHHHHhCCCC
Confidence 999999999999999988888888776554 45599999999999999988
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCC----HHHHHHHH
Q 002273 323 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF----SQSLNNLG 398 (944)
Q Consensus 323 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la 398 (944)
......++.. ...|++++|+..+++++...|.+...+. ++.++...++.++|+..++++++..|.. ..++..+|
T Consensus 145 ~~~~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la 222 (275)
T 1xnf_A 145 PFRSLWLYLA-EQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLG 222 (275)
T ss_dssp HHHHHHHHHH-HHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHH-HHhcCHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHH
Confidence 8766655544 5668999999999999888887765544 6777778888889999999888776643 67888899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002273 399 VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAY 448 (944)
Q Consensus 399 ~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~ 448 (944)
.++...|++++|+.+|+++++.+|++... .+.++..+|++++|++.|
T Consensus 223 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 223 KYYLSLGDLDSATALFKLAVANNVHNFVE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCCTTCHH---HHHHHHHHHHHHHC----
T ss_pred HHHHHcCCHHHHHHHHHHHHhCCchhHHH---HHHHHHHHHHHHhhHHHH
Confidence 99999999999999999999888876443 367788888888888877
No 54
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.86 E-value=7.2e-20 Score=192.06 Aligned_cols=208 Identities=18% Similarity=0.110 Sum_probs=158.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 002273 191 APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALT 270 (944)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~ 270 (944)
+.+++.+|.++...|++++|+.+|+++++.+|.+..++..+|.++...|++++|++.++++++..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--------------- 101 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD--------------- 101 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---------------
Confidence 55566666666666666666666666666666666666666666666666666666666655554
Q ss_pred HhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q 002273 271 DLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAF 350 (944)
Q Consensus 271 ~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 350 (944)
|.+..++..+|.++...|++++|+.++++++
T Consensus 102 -------------------------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 132 (252)
T 2ho1_A 102 -------------------------------------------------SRNARVLNNYGGFLYEQKRYEEAYQRLLEAS 132 (252)
T ss_dssp -------------------------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred -------------------------------------------------cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4445566677777777888888888888888
Q ss_pred h--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 002273 351 H--FNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 428 (944)
Q Consensus 351 ~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~ 428 (944)
+ ..|.+..++..+|.++...|++++|+.+|+++++..|.+..++..+|.++...|++++|+.+++++++..|.+..++
T Consensus 133 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 212 (252)
T 2ho1_A 133 QDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSL 212 (252)
T ss_dssp TCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHH
T ss_pred hCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHH
Confidence 7 67777888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhh
Q 002273 429 NNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 462 (944)
Q Consensus 429 ~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~ 462 (944)
..++.++...|++++|.++++++++++|+++.+.
T Consensus 213 ~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 246 (252)
T 2ho1_A 213 LLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQ 246 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHH
Confidence 8888888888888888888888888888877654
No 55
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.86 E-value=5.8e-20 Score=182.86 Aligned_cols=172 Identities=25% Similarity=0.363 Sum_probs=131.5
Q ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHH
Q 002273 80 GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV 159 (944)
Q Consensus 80 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 159 (944)
+++.+|+.+|.++..+|++++|+..|+++++++|+++.++..+|.++...|++++|+..+.+++...|++...
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------- 75 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEA------- 75 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHH-------
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHH-------
Confidence 4566777777777777777777777777777777777777777777777777777777777777777776554
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 002273 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG 239 (944)
Q Consensus 160 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 239 (944)
+..+|.++...++++.|+..+.++++.+|++..++..+|.+|...|++++|++.|+++++.+|.++.++..+|.+|..+|
T Consensus 76 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g 155 (184)
T 3vtx_A 76 YYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKG 155 (184)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCC
Confidence 55566666677777777777777777777777777788888888888888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHhCCCc
Q 002273 240 DLESAIACYERCLAVSPNF 258 (944)
Q Consensus 240 ~~~~A~~~~~~al~~~p~~ 258 (944)
++++|+..|+++++++|++
T Consensus 156 ~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 156 LRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp CHHHHHHHHHHHHHTTHHH
T ss_pred CHHHHHHHHHHHHhCCccC
Confidence 8888888888888777764
No 56
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.86 E-value=1.9e-19 Score=184.71 Aligned_cols=213 Identities=16% Similarity=0.122 Sum_probs=161.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 002273 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266 (944)
Q Consensus 187 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 266 (944)
.|+++.++..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------------ 71 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI------------ 71 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHh------------
Confidence 34455556666666666666666666666666666666666666666666666655555555555554
Q ss_pred HHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CChHHHHHH
Q 002273 267 IALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM-LKFDMAIVF 345 (944)
Q Consensus 267 ~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~ 345 (944)
.|.+..++..+|.++... |++++|+..
T Consensus 72 ----------------------------------------------------~~~~~~~~~~l~~~~~~~~~~~~~A~~~ 99 (225)
T 2vq2_A 72 ----------------------------------------------------KPDSAEINNNYGWFLCGRLNRPAESMAY 99 (225)
T ss_dssp ----------------------------------------------------CTTCHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred ----------------------------------------------------CCCChHHHHHHHHHHHHhcCcHHHHHHH
Confidence 444556667777778888 888888888
Q ss_pred HHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-
Q 002273 346 YELAFH--FNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP- 422 (944)
Q Consensus 346 ~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p- 422 (944)
++++++ ..|.+..++..+|.++...|++++|+.+++++++..|++..++..+|.++...|++++|+..++++++..|
T Consensus 100 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 179 (225)
T 2vq2_A 100 FDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEV 179 (225)
T ss_dssp HHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCS
T ss_pred HHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 888888 55666788888888888888888888888888888888888888888888888889899888888888888
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhh
Q 002273 423 TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 463 (944)
Q Consensus 423 ~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~ 463 (944)
.+..++..++.++...|+.++|..+++.+++.+|+++.+..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 220 (225)
T 2vq2_A 180 LQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQT 220 (225)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHH
Confidence 88888888888888888888888888888888888876543
No 57
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.86 E-value=6.4e-20 Score=194.99 Aligned_cols=253 Identities=14% Similarity=0.073 Sum_probs=217.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002273 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSE 203 (944)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 203 (944)
..+...|++++|+..|+++++..+.+.. ..+.++..+|.++...|++++|+..|+++++.+|++..++..+|.++..
T Consensus 13 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~ 89 (275)
T 1xnf_A 13 VPLQPTLQQEVILARMEQILASRALTDD---ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ 89 (275)
T ss_dssp CCCCCCHHHHHHHHHHHHHHTSSCCCHH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred eccCccchHHHHHHHHHHHHhcccccCc---hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 3444568899999999999998654432 2356789999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHH
Q 002273 204 LMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLL 283 (944)
Q Consensus 204 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~ 283 (944)
.|++++|+.+|+++++.+|.+..++..+|.++...|++++|+..|+++++..|++.......+..
T Consensus 90 ~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~--------------- 154 (275)
T 1xnf_A 90 AGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA--------------- 154 (275)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH---------------
T ss_pred ccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH---------------
Confidence 99999999999999999999999999999999999999999999999999999987655444322
Q ss_pred HhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC----HHH
Q 002273 284 FRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC----AEA 359 (944)
Q Consensus 284 ~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~ 359 (944)
...|++++|+..+++++...|.+...+. ++..+...++.++|+..+++++...|.. ..+
T Consensus 155 ----------------~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 217 (275)
T 1xnf_A 155 ----------------EQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSET 217 (275)
T ss_dssp ----------------HHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred ----------------HHhcCHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHH
Confidence 2246779999999999999988766554 7788888899999999999999887643 789
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002273 360 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMI 414 (944)
Q Consensus 360 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l 414 (944)
+..+|.++...|++++|+..|+++++.+|++... .+.++..+|++++|++.+
T Consensus 218 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 218 NFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH---HHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH---HHHHHHHHHHHHhhHHHH
Confidence 9999999999999999999999999999977443 477888999999999887
No 58
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.85 E-value=2.8e-19 Score=183.50 Aligned_cols=217 Identities=20% Similarity=0.159 Sum_probs=201.3
Q ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 002273 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (944)
Q Consensus 44 ~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (944)
.+..+..++.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|.+..++..+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~ 83 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYG 83 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 34578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHc-CCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 002273 124 ILYKDE-GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYS 202 (944)
Q Consensus 124 ~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 202 (944)
.++... |++++|+..++++++ .|.++.. ..++..+|.++...|++++|+..++++++..|.+..++..+|.++.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 158 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALA-DPTYPTP----YIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKM 158 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHT-STTCSCH----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHc-CcCCcch----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 999999 999999999999999 3333221 3357889999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Q 002273 203 ELMQYDTALGCYEKAALERP-MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM 265 (944)
Q Consensus 203 ~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 265 (944)
..|++++|+..++++++..| .+...+..++.++...|+.++|..+++.+.+..|++......+
T Consensus 159 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 159 LAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL 222 (225)
T ss_dssp HHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence 99999999999999999999 9999999999999999999999999999999999988765443
No 59
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.85 E-value=1.1e-18 Score=210.73 Aligned_cols=361 Identities=11% Similarity=0.076 Sum_probs=240.3
Q ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 002273 45 GFEGKDALSYANILRSRNKFVDALALYEIVLEKDS---GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTH 121 (944)
Q Consensus 45 ~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 121 (944)
..+++..-..++.|...|.+.+|+++|++++-... ++...-..++.+..+. +..+..++..+.-..+ .-.
T Consensus 982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d------~~e 1054 (1630)
T 1xi4_A 982 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD------APD 1054 (1630)
T ss_pred ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc------HHH
Confidence 34666667778888899999999999999994332 2444444455555554 3444444444432211 234
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 002273 122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVY 201 (944)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 201 (944)
+|.++...|.+++|..+|+++- .+.. .+...+...+++++|+++++++ +.+.+|+.+|.++
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~----~~~~----------A~~VLie~i~nldrAiE~Aerv-----n~p~vWsqLAKAq 1115 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD----VNTS----------AVQVLIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQ 1115 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC----CHHH----------HHHHHHHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHH
Confidence 8999999999999999999972 1111 1222334678999999998865 5689999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHH
Q 002273 202 SELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRAL 281 (944)
Q Consensus 202 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~ 281 (944)
...|++++|+..|.++ +++..+..++.++.+.|++++|+++|..+.+..++. .....++.+|.++++....+..
T Consensus 1116 l~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~-~Idt~LafaYAKl~rleele~f 1189 (1630)
T 1xi4_A 1116 LQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES-YVETELIFALAKTNRLAELEEF 1189 (1630)
T ss_pred HhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc-cccHHHHHHHHhhcCHHHHHHH
Confidence 9999999999999886 788999999999999999999999999999887542 2333577777777554321111
Q ss_pred HHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH
Q 002273 282 LLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACN 361 (944)
Q Consensus 282 ~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 361 (944)
. ..........++..+...|++++|+.+|.++ ..|..++.++.++|++++|++.++++ .+..+|.
T Consensus 1190 I--~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWk 1254 (1630)
T 1xi4_A 1190 I--NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWK 1254 (1630)
T ss_pred H--hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHH
Confidence 1 0000011113445566666666666666664 35666666666666666666666666 3356666
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--C
Q 002273 362 NLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA--G 439 (944)
Q Consensus 362 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~--g 439 (944)
..+.++...|++..|..+... +.. +++.+..++..|...|.+++|+.++++++.+++.+...+..+|.+|.+- +
T Consensus 1255 ev~~acve~~Ef~LA~~cgl~-Iiv---~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~pe 1330 (1630)
T 1xi4_A 1255 EVCFACVDGKEFRLAQMCGLH-IVV---HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQ 1330 (1630)
T ss_pred HHHHHHhhhhHHHHHHHHHHh-hhc---CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHH
Confidence 666666666666666665553 222 2344446666666666666776666666666666666666666665543 3
Q ss_pred CHHHHHHHHHHHHhhCC
Q 002273 440 SISLAIDAYEQCLKIDP 456 (944)
Q Consensus 440 ~~~eA~~~~~~al~l~P 456 (944)
+..++++.|...+.+.|
T Consensus 1331 klmEhlk~f~~rini~k 1347 (1630)
T 1xi4_A 1331 KMREHLELFWSRVNIPK 1347 (1630)
T ss_pred HHHHHHHHHHHhcccch
Confidence 55666666666666555
No 60
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.85 E-value=1.3e-19 Score=180.33 Aligned_cols=162 Identities=24% Similarity=0.373 Sum_probs=156.8
Q ss_pred hhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHH
Q 002273 299 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE 378 (944)
Q Consensus 299 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 378 (944)
+...|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++...|++..++..+|.++...+++++|+.
T Consensus 15 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 94 (184)
T 3vtx_A 15 KRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAID 94 (184)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHH
Confidence 44566779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002273 379 CYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 458 (944)
Q Consensus 379 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~ 458 (944)
.++++++.+|++..++..+|.++..+|++++|++.|+++++.+|+++.+++++|.+|..+|++++|+++|+++++++|++
T Consensus 95 ~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 95 ALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred hh
Q 002273 459 RN 460 (944)
Q Consensus 459 ~~ 460 (944)
+.
T Consensus 175 a~ 176 (184)
T 3vtx_A 175 AK 176 (184)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 61
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.85 E-value=1.3e-19 Score=196.69 Aligned_cols=229 Identities=10% Similarity=0.042 Sum_probs=163.7
Q ss_pred HHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCCh-------HHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHc
Q 002273 133 VEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT-------QDGIQKYYEALK-IDPHYAPAYYNLGVVYSEL 204 (944)
Q Consensus 133 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~-------~~A~~~~~~al~-~~p~~~~~~~~la~~~~~~ 204 (944)
++|+..|++++..+|.+...+..++..+...+..+...|++ ++|+..|+++++ ++|++..+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 56777777777777777776665555555444444456775 899999999999 6999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHH
Q 002273 205 MQYDTALGCYEKAALERPMYAE-AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLL 283 (944)
Q Consensus 205 g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~ 283 (944)
|++++|...|+++++..|.++. +|..+|.++...|++++|+..|+++++..|.....+...+...
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~-------------- 178 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALME-------------- 178 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHH--------------
T ss_pred CCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH--------------
Confidence 9999999999999999998886 8999999999999999999999999998887655544322211
Q ss_pred HhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh---CC-CCHHH
Q 002273 284 FRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF---NP-HCAEA 359 (944)
Q Consensus 284 ~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p-~~~~~ 359 (944)
+...|++++|+..|+++++.+|+++.++..++.++...|++++|+.+|++++.. .| ....+
T Consensus 179 ---------------~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l 243 (308)
T 2ond_A 179 ---------------YYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEI 243 (308)
T ss_dssp ---------------HHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHH
T ss_pred ---------------HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 111355566666666666666666666666666666666666666666666663 33 24555
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCC
Q 002273 360 CNNLGVIYKDRDNLDKAVECYQMALSIKPNF 390 (944)
Q Consensus 360 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 390 (944)
|..++..+...|++++|...++++++..|++
T Consensus 244 ~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~ 274 (308)
T 2ond_A 244 WARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHcccc
Confidence 6666666666666666666666666666553
No 62
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.85 E-value=5.7e-20 Score=211.95 Aligned_cols=233 Identities=20% Similarity=0.221 Sum_probs=168.8
Q ss_pred CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002273 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQY-DTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE 249 (944)
Q Consensus 171 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 249 (944)
+.+++++..+++.....|.+..+++.+|.++...|++ ++|+++|+++++.+|++..++..+|.+|...|++++|+.+|+
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4567888889998999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 002273 250 RCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNL 329 (944)
Q Consensus 250 ~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 329 (944)
++++++|+ ..++..++.++...... ......|++++|+..|+++++.+|++..++..+
T Consensus 162 ~al~~~p~-~~~~~~lg~~~~~~~~~---------------------~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 219 (474)
T 4abn_A 162 GALTHCKN-KVSLQNLSMVLRQLQTD---------------------SGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYIL 219 (474)
T ss_dssp HHHTTCCC-HHHHHHHHHHHTTCCCS---------------------CHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHhhCCC-HHHHHHHHHHHHHhccC---------------------ChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999999 68888888887665100 001122455888888888887777777777777
Q ss_pred HHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHcCC
Q 002273 330 GVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP---NFSQSLNNLGVVYTVQGK 406 (944)
Q Consensus 330 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~ 406 (944)
|.+|... ++..+. ..|++++|+.+|+++++++| +++.+++++|.+|...|+
T Consensus 220 g~~~~~~-----------------------~~~~~~---~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~ 273 (474)
T 4abn_A 220 GNAYLSL-----------------------YFNTGQ---NPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEES 273 (474)
T ss_dssp HHHHHHH-----------------------HHHTTC---CHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHH-----------------------HHhhcc---ccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCC
Confidence 7777666 000000 00445555555555555555 555555556666666666
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002273 407 MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQC 451 (944)
Q Consensus 407 ~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~a 451 (944)
+++|+..|+++++++|++..++..++.++..+|++++|++.+.+.
T Consensus 274 ~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 274 YGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 666666666666666666666666666666666666666555443
No 63
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.85 E-value=4.2e-20 Score=213.04 Aligned_cols=220 Identities=15% Similarity=0.135 Sum_probs=181.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHH
Q 002273 205 MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDL-ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLL 283 (944)
Q Consensus 205 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~ 283 (944)
+++++++..+++.....|.+..+++.+|.++...|++ ++|+..|+++++.+|++..++..++.++...+
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g---------- 151 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKG---------- 151 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT----------
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC----------
Confidence 3477888889998899999999999999999999999 99999999999999999999999998876654
Q ss_pred HhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 002273 284 FRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNL 363 (944)
Q Consensus 284 ~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 363 (944)
++++|+..|+++++.+|+ ..++..+|.++...+.-
T Consensus 152 --------------------~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~------------------------ 186 (474)
T 4abn_A 152 --------------------DVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQLQTD------------------------ 186 (474)
T ss_dssp --------------------CHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTTCCCS------------------------
T ss_pred --------------------CHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhccC------------------------
Confidence 558888888888888777 57777777766665110
Q ss_pred HHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCC---CCHHHHHHHH
Q 002273 364 GVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ--------GKMDAAAEMIEKAIAANP---TYAEAYNNLG 432 (944)
Q Consensus 364 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--------g~~~~A~~~l~~al~~~p---~~~~a~~~la 432 (944)
......|++++|++.|+++++++|+++.+++++|.+|... |++++|+.+|+++++++| +++.+++++|
T Consensus 187 -~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg 265 (474)
T 4abn_A 187 -SGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRA 265 (474)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHH
T ss_pred -ChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHH
Confidence 0001226677777777777777888888888888888877 999999999999999999 9999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCChhhhhhHHHHhhhccCCChHHHHH
Q 002273 433 VLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFE 482 (944)
Q Consensus 433 ~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~ 482 (944)
.+|...|++++|++.|+++++++|++..++.++...+..+ ++.+++.+
T Consensus 266 ~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~l--g~~~eAi~ 313 (474)
T 4abn_A 266 TLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFL--SRLTSLLE 313 (474)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--HHHHHHHH
Confidence 9999999999999999999999999998887765444333 34444443
No 64
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.84 E-value=1.3e-19 Score=187.19 Aligned_cols=217 Identities=19% Similarity=0.183 Sum_probs=197.6
Q ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 002273 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDS-GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGI 124 (944)
Q Consensus 46 ~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 124 (944)
.++..++..|..++..|++++|+..|+++++.+| .+..+++.+|.++...|++++|+..|+++++.+|++..++..+|.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 4678999999999999999999999999999999 899999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--CHHHHHHHHHHHH
Q 002273 125 LYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH--YAPAYYNLGVVYS 202 (944)
Q Consensus 125 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~ 202 (944)
++..+|++++|+..|+++++.+|++......++.++..+|.++...|++++|+..|+++++.+|+ +..++..+|.+|.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 164 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFY 164 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence 99999999999999999999999999888888899999999999999999999999999999999 9999999999997
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 002273 203 ELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIAL 269 (944)
Q Consensus 203 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l 269 (944)
..| ...++++..+.+.....+ .+......+.+++|+.+|+++++++|++..+...++.+.
T Consensus 165 ~~~-----~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 165 NNG-----ADVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp HHH-----HHHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 655 445677777766665444 344556678899999999999999999999888877664
No 65
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.84 E-value=3.8e-20 Score=207.76 Aligned_cols=242 Identities=13% Similarity=0.129 Sum_probs=200.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 002273 193 AYYNLGVVYSELMQYDTALGCYEKAALE---RPM---YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266 (944)
Q Consensus 193 ~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 266 (944)
.++.+|.++...|++++|+.+|+++++. .++ ...++..+|.++...|++++|+.++++++++.+.........+
T Consensus 105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 184 (383)
T 3ulq_A 105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL 184 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence 4456999999999999999999999986 222 4678999999999999999999999999998665543233334
Q ss_pred HHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChH
Q 002273 267 IALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHY------ADAMYNLGVAYGEMLKFD 340 (944)
Q Consensus 267 ~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~ 340 (944)
.++..+|.. +...|++++|+.+++++++..+.. ..++.++|.+|...|+++
T Consensus 185 ~~~~~lg~~-----------------------~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~ 241 (383)
T 3ulq_A 185 QCHSLFATN-----------------------FLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYE 241 (383)
T ss_dssp HHHHHHHHH-----------------------HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHH-----------------------HHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHH
Confidence 444444433 666788899999999999875432 358999999999999999
Q ss_pred HHHHHHHHHHh-----hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----CCCHHHHHHHHHHHHHcCC---
Q 002273 341 MAIVFYELAFH-----FN-PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK-----PNFSQSLNNLGVVYTVQGK--- 406 (944)
Q Consensus 341 ~A~~~~~~al~-----~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~la~~~~~~g~--- 406 (944)
+|+.+++++++ .+ |....++.++|.++...|++++|+.++++++++. |.....+..+|.++...|+
T Consensus 242 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 321 (383)
T 3ulq_A 242 DAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEA 321 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHH
T ss_pred HHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHH
Confidence 99999999999 45 7778999999999999999999999999999884 3333456789999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002273 407 MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 458 (944)
Q Consensus 407 ~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~ 458 (944)
+++|+.++++. ...|....++..+|.+|...|++++|..+|++++++...-
T Consensus 322 ~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i 372 (383)
T 3ulq_A 322 IQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLI 372 (383)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence 88888888876 3334456789999999999999999999999999886543
No 66
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.83 E-value=1.6e-18 Score=188.16 Aligned_cols=154 Identities=6% Similarity=0.016 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHH
Q 002273 306 NQGVAYYKKALYYNWHYAD-AMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD-RDNLDKAVECYQMA 383 (944)
Q Consensus 306 ~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~a 383 (944)
++|...|+++++..|.++. +|..+|.++...|++++|+..|+++++..|....++...+.+... .|++++|+.+|+++
T Consensus 116 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~a 195 (308)
T 2ond_A 116 EKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELG 195 (308)
T ss_dssp HHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444444444444444443 555555666666666666666666666666665555555444332 56666666666666
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 002273 384 LSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA---NP-TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 459 (944)
Q Consensus 384 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~---~p-~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~ 459 (944)
++.+|+++.++..++.++...|++++|+..|+++++. .| +...+|..++..+...|+.++|...++++++..|++.
T Consensus 196 l~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 196 LKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY 275 (308)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred HHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccccc
Confidence 6666666666666666666666666666666666664 33 2455666666666666666666666666666666654
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.83 E-value=4e-19 Score=199.37 Aligned_cols=315 Identities=14% Similarity=0.071 Sum_probs=230.2
Q ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC---CCHHHH--HHH--HHHHHHhCCHHHHH-----------HHHHH
Q 002273 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDS---GNVEAH--IGK--GICLQMQNMGRLAF-----------DSFSE 107 (944)
Q Consensus 46 ~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~--~~l--a~~~~~~g~~~~A~-----------~~~~~ 107 (944)
..+...+.....+..++++++|..+++++.+.-+ .+...+ +.+ .......++++.+. +.+++
T Consensus 10 ~~v~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 89 (383)
T 3ulq_A 10 SSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLE 89 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHH
Confidence 4677888889999999999999999999866432 344433 222 22223344444444 55555
Q ss_pred HHhcCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHH
Q 002273 108 AVKLDPQNAC------AHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYY 181 (944)
Q Consensus 108 al~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~ 181 (944)
+-. .+.... .++.+|.++...|++++|+..|++++++.....+ ....+.++..+|.++...|++++|+..++
T Consensus 90 i~~-~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~a~~~~~lg~~~~~~~~~~~A~~~~~ 167 (383)
T 3ulq_A 90 IDK-KQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKD-RIEKAEFFFKMSESYYYMKQTYFSMDYAR 167 (383)
T ss_dssp HHH-HTHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHh-cCCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 332 333322 3455999999999999999999999987433222 23357789999999999999999999999
Q ss_pred HHHhhCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHH
Q 002273 182 EALKIDPH-------YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY------AEAYCNMGVIYKNRGDLESAIACY 248 (944)
Q Consensus 182 ~al~~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~ 248 (944)
++++..+. ...++..+|.+|...|++++|+.+|+++++..+.. ..++.++|.+|..+|++++|+.+|
T Consensus 168 ~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~ 247 (383)
T 3ulq_A 168 QAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYF 247 (383)
T ss_dssp HHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99998443 34588999999999999999999999999875432 358899999999999999999999
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhC-CCCHHHHH
Q 002273 249 ERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYN-WHYADAMY 327 (944)
Q Consensus 249 ~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 327 (944)
++++++.+.. .+ |....++.
T Consensus 248 ~~al~~~~~~-----------------------------------------------------------~~~~~~~~~~~ 268 (383)
T 3ulq_A 248 KRAIAVFEES-----------------------------------------------------------NILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHHT-----------------------------------------------------------TCGGGHHHHHH
T ss_pred HHHHHHHHhh-----------------------------------------------------------ccchhHHHHHH
Confidence 9998742110 01 22345667
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhC-----CCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 002273 328 NLGVAYGEMLKFDMAIVFYELAFHFN-----PHCAEACNNLGVIYKDRDN---LDKAVECYQMALSIKPNFSQSLNNLGV 399 (944)
Q Consensus 328 ~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~ 399 (944)
.+|.++...|++++|+.++++++++. +.....+..+|.++...|+ +++|+..+++. ...+....++..+|.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence 77777777788888888887777762 3333345668888888888 77777777766 333444567788888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCC
Q 002273 400 VYTVQGKMDAAAEMIEKAIAANP 422 (944)
Q Consensus 400 ~~~~~g~~~~A~~~l~~al~~~p 422 (944)
+|...|++++|+.++++++++..
T Consensus 348 ~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHHHHHHHH
Confidence 88888888888888888887643
No 68
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.83 E-value=7.9e-18 Score=203.27 Aligned_cols=320 Identities=17% Similarity=0.164 Sum_probs=260.1
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q 002273 54 YANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLV 133 (944)
Q Consensus 54 ~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~ 133 (944)
.|.++...|.|++|..+|+++- .+..+ +...+...+++++|+++++++ +.+.+|+.+|.++...|+++
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~----~~~~A---~~VLie~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD----VNTSA---VQVLIEHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC----CHHHH---HHHHHHHHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCHH
Confidence 3899999999999999999972 11121 233344888999999998865 56889999999999999999
Q ss_pred HHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002273 134 EAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGC 213 (944)
Q Consensus 134 ~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 213 (944)
+|+..|.++ ++... +..++.++.+.|++++|+++|..+.+..++ +.+...+|.+|.+++++++ ++.
T Consensus 1123 EAIdsYiKA-----dD~sa-------y~eVa~~~~~lGkyEEAIeyL~mArk~~~e-~~Idt~LafaYAKl~rlee-le~ 1188 (1630)
T 1xi4_A 1123 EAIDSYIKA-----DDPSS-------YMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNRLAE-LEE 1188 (1630)
T ss_pred HHHHHHHhc-----CChHH-------HHHHHHHHHHcCCHHHHHHHHHHHHhhccc-ccccHHHHHHHHhhcCHHH-HHH
Confidence 999999886 44443 777888999999999999999999988744 3334459999999999885 444
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCc
Q 002273 214 YEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQS 293 (944)
Q Consensus 214 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~ 293 (944)
|. ..+ +...+..+|..+...|++++|..+|.++ ..|..++.++..+
T Consensus 1189 fI----~~~-n~ad~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkL--------------------- 1234 (1630)
T 1xi4_A 1189 FI----NGP-NNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHL--------------------- 1234 (1630)
T ss_pred HH----hCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHh---------------------
Confidence 42 233 4466778999999999999999999996 3566666666554
Q ss_pred hhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCH
Q 002273 294 PFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNL 373 (944)
Q Consensus 294 ~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 373 (944)
|++++|++.++++ .+..+|...+.++...|+|..|..+... +..+ ++.+..++..|...|.+
T Consensus 1235 ---------ge~q~AIEaarKA-----~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~---~deLeeli~yYe~~G~f 1296 (1630)
T 1xi4_A 1235 ---------GEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVH---ADELEELINYYQDRGYF 1296 (1630)
T ss_pred ---------CCHHHHHHHHHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcC---HHHHHHHHHHHHHcCCH
Confidence 5669999999998 5579999999999999999999998874 4333 55666899999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcCCHHHHHH
Q 002273 374 DKAVECYQMALSIKPNFSQSLNNLGVVYTV--QGKMDAAAEMIEKAIAANP-----TYAEAYNNLGVLYRDAGSISLAID 446 (944)
Q Consensus 374 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~--~g~~~~A~~~l~~al~~~p-----~~~~a~~~la~~~~~~g~~~eA~~ 446 (944)
++|+.++++++.+++.+...+..+|.+|.+ .++..+++++|...+.+.| ++...|..+..+|.+-|+++.|+.
T Consensus 1297 eEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1297 EELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 999999999999999999999889888876 5678889999998888777 678899999999999999999995
Q ss_pred HHHHH
Q 002273 447 AYEQC 451 (944)
Q Consensus 447 ~~~~a 451 (944)
.+-+.
T Consensus 1377 tm~~h 1381 (1630)
T 1xi4_A 1377 TMMNH 1381 (1630)
T ss_pred HHHhc
Confidence 54443
No 69
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.81 E-value=2.8e-19 Score=214.00 Aligned_cols=174 Identities=21% Similarity=0.333 Sum_probs=155.7
Q ss_pred hCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHH
Q 002273 77 KDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECL 156 (944)
Q Consensus 77 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 156 (944)
..|++++++..+|.++..+|++++|+..|+++++++|+++.++.++|.+|..+|++++|+..|+++++++|++..+
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a---- 79 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADA---- 79 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH----
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH----
Confidence 4688888999999999999999999999999999999999999999999999999999999999999999988664
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002273 157 AIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK 236 (944)
Q Consensus 157 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 236 (944)
+.++|.++..+|++++|++.|+++++++|++..+++++|.+|..+|++++|++.|+++++++|++..++.++|.++.
T Consensus 80 ---~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~ 156 (723)
T 4gyw_A 80 ---YSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQ 156 (723)
T ss_dssp ---HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHH
Confidence 77888888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCC
Q 002273 237 NRGDLESAIACYERCLAVSPN 257 (944)
Q Consensus 237 ~~g~~~~A~~~~~~al~~~p~ 257 (944)
.+|++++|++.+++++++.|+
T Consensus 157 ~~g~~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 157 IVCDWTDYDERMKKLVSIVAD 177 (723)
T ss_dssp HTTCCTTHHHHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHHhChh
Confidence 999999999999999887654
No 70
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.81 E-value=6.2e-18 Score=174.57 Aligned_cols=214 Identities=17% Similarity=0.204 Sum_probs=134.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002273 158 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDP-HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYK 236 (944)
Q Consensus 158 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 236 (944)
..++.+|.++...|++++|+..|+++++.+| .+..+++.+|.++...|++++|+..|+++++.+|.+..++..+|.++.
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 87 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYR 87 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence 3455566666666666666666666666665 555555566666666666666666666666666666666666666666
Q ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHH
Q 002273 237 NRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKAL 316 (944)
Q Consensus 237 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al 316 (944)
.+|++++|+..|+++++.+|++......++
T Consensus 88 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~-------------------------------------------------- 117 (228)
T 4i17_A 88 DMKNNQEYIATLTEGIKAVPGNATIEKLYA-------------------------------------------------- 117 (228)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHH--------------------------------------------------
T ss_pred HcccHHHHHHHHHHHHHHCCCcHHHHHHHH--------------------------------------------------
Confidence 666666666666666666665544333222
Q ss_pred HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHH
Q 002273 317 YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH--CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL 394 (944)
Q Consensus 317 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 394 (944)
.++..+|.++...|++++|+..|+++++.+|+ ++.++..+|.++...| ...++++..+.+.....+
T Consensus 118 -------~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~-----~~~~~~a~~~~~~~~~~~ 185 (228)
T 4i17_A 118 -------IYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNG-----ADVLRKATPLASSNKEKY 185 (228)
T ss_dssp -------HHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH-----HHHHHHHGGGTTTCHHHH
T ss_pred -------HHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHH-----HHHHHHHHhcccCCHHHH
Confidence 34666777777777888888888888777777 7777777777775443 344566666655554433
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002273 395 NNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 435 (944)
Q Consensus 395 ~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~ 435 (944)
.+......+.+++|+.+|+++++++|++..+...++.+.
T Consensus 186 --~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~ 224 (228)
T 4i17_A 186 --ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK 224 (228)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 233344456677777777777777777777666666554
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.80 E-value=1.6e-19 Score=195.38 Aligned_cols=241 Identities=20% Similarity=0.272 Sum_probs=186.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---
Q 002273 187 DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE--------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS--- 255 (944)
Q Consensus 187 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--- 255 (944)
+|....++..+|.++...|++++|+.+++++++. .|....++..+|.++...|++++|+..+++++...
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 4556778888888999999999999999888884 55667788889999999999999999999988773
Q ss_pred -----CCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhC--------CCC
Q 002273 256 -----PNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYN--------WHY 322 (944)
Q Consensus 256 -----p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~--------p~~ 322 (944)
|.....+..++.++ ...|++++|+.+++++++.. |..
T Consensus 103 ~~~~~~~~~~~~~~l~~~~------------------------------~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 152 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLY------------------------------GKRGKYKEAEPLCKRALEIREKVLGKDHPDV 152 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHH------------------------------HTTTCHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred hCCCChHHHHHHHHHHHHH------------------------------HHcCcHHHHHHHHHHHHHHHHHhcCCCChHH
Confidence 33344555555554 44567799999999999874 445
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC-----
Q 002273 323 ADAMYNLGVAYGEMLKFDMAIVFYELAFHF--------NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN----- 389 (944)
Q Consensus 323 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----- 389 (944)
..++..+|.++...|++++|+.+++++++. .|....++..+|.++...|++++|+.+++++++..+.
T Consensus 153 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 232 (311)
T 3nf1_A 153 AKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGS 232 (311)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 678999999999999999999999999998 6666789999999999999999999999999986432
Q ss_pred ----C------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002273 390 ----F------SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 457 (944)
Q Consensus 390 ----~------~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~ 457 (944)
. ...+..++..+...+.+.+|...++++....|....++..+|.+|...|++++|+++|++++++.|+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 233 VDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp -----CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred CCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 1 2344455555666778888899999999999999999999999999999999999999999999875
No 72
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.79 E-value=2.7e-18 Score=192.30 Aligned_cols=239 Identities=15% Similarity=0.131 Sum_probs=197.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHH
Q 002273 193 AYYNLGVVYSELMQYDTALGCYEKAALERP------MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMA 266 (944)
Q Consensus 193 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 266 (944)
.++.+|..+...|++++|+..|+++++..+ ....++..+|.+|...|++++|+.+++++++..+.........+
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 182 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI 182 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence 567889999999999999999999997632 24678999999999999999999999999998665433222344
Q ss_pred HHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCChH
Q 002273 267 IALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWH------YADAMYNLGVAYGEMLKFD 340 (944)
Q Consensus 267 ~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~ 340 (944)
.++..+|.. +...|++++|+.+++++++..+. ...++.++|.+|...|+++
T Consensus 183 ~~~~~lg~~-----------------------y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~ 239 (378)
T 3q15_A 183 QSLFVIAGN-----------------------YDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQ 239 (378)
T ss_dssp HHHHHHHHH-----------------------HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHH-----------------------HHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 444444443 66678889999999999986431 2468899999999999999
Q ss_pred HHHHHHHHHHh-----hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC-----CCHHHHHHHHHHHHHcCC---H
Q 002273 341 MAIVFYELAFH-----FNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP-----NFSQSLNNLGVVYTVQGK---M 407 (944)
Q Consensus 341 ~A~~~~~~al~-----~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~---~ 407 (944)
+|+.+++++++ .+|....++..+|.++...|++++|+.++++++++.+ .....+..++.++...++ +
T Consensus 240 ~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~ 319 (378)
T 3q15_A 240 MAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKI 319 (378)
T ss_dssp HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHH
T ss_pred HHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHH
Confidence 99999999999 6777789999999999999999999999999999843 344567778888888888 8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 002273 408 DAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 455 (944)
Q Consensus 408 ~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~ 455 (944)
.+|+.++++. ...+....++..+|.+|...|++++|..+|++++++.
T Consensus 320 ~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 320 HDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 8888888772 2234446788899999999999999999999998764
No 73
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.79 E-value=4.2e-17 Score=182.10 Aligned_cols=308 Identities=11% Similarity=-0.019 Sum_probs=201.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHH
Q 002273 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA-----CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157 (944)
Q Consensus 83 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 157 (944)
.++..+|.++...|++++|+..+++++...|... .++..+|.++...|++++|+..+++++...+..... ...+
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~ 93 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW-HYAL 93 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH-HHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH-HHHH
Confidence 4455666666667777777777777766655432 256677777777888888888888877765554332 2335
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----C
Q 002273 158 IVLTDLGTSLKLAGNTQDGIQKYYEALKID--------PHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM-----Y 224 (944)
Q Consensus 158 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----~ 224 (944)
.++..+|.++...|++++|+..++++++.. |....++..+|.++...|++++|+.+++++++..+. .
T Consensus 94 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 173 (373)
T 1hz4_A 94 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ 173 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHH
Confidence 567778888888888888888888888763 334567788999999999999999999999988764 3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhc
Q 002273 225 AEAYCNMGVIYKNRGDLESAIACYERCLAVSPN--FEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLE 302 (944)
Q Consensus 225 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~ 302 (944)
..++..+|.++...|++++|...+++++...+. ....+..
T Consensus 174 ~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~-------------------------------------- 215 (373)
T 1hz4_A 174 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS-------------------------------------- 215 (373)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHH--------------------------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHH--------------------------------------
Confidence 467889999999999999999999999876432 1111100
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHCCCHHHHHH
Q 002273 303 GDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC----AEACNNLGVIYKDRDNLDKAVE 378 (944)
Q Consensus 303 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~ 378 (944)
.....++.++...|++++|...+++++...+.. ...+..++.++...|++++|+.
T Consensus 216 ---------------------~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 274 (373)
T 1hz4_A 216 ---------------------NANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEI 274 (373)
T ss_dssp ---------------------HHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ---------------------HHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 011122334445556666666665555544332 2245566666666777777777
Q ss_pred HHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002273 379 CYQMALSIKPN------FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCL 452 (944)
Q Consensus 379 ~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al 452 (944)
.+++++...+. ...++..+|.++...|++++|...+++++...+.. .....+...| +.....+++++
T Consensus 275 ~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~-----g~~~~~~~~g--~~~~~ll~~~~ 347 (373)
T 1hz4_A 275 VLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRT-----GFISHFVIEG--EAMAQQLRQLI 347 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-----CCCHHHHTTH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccc-----cHHHHHHHcc--HHHHHHHHHHH
Confidence 77666655322 12356667777777777777777777777654321 1112222333 45666667777
Q ss_pred hhCCC
Q 002273 453 KIDPD 457 (944)
Q Consensus 453 ~l~P~ 457 (944)
...|-
T Consensus 348 ~~~~~ 352 (373)
T 1hz4_A 348 QLNTL 352 (373)
T ss_dssp HTTCS
T ss_pred hCCCC
Confidence 76664
No 74
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.78 E-value=9.1e-18 Score=177.33 Aligned_cols=209 Identities=16% Similarity=0.157 Sum_probs=160.5
Q ss_pred CCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC---H
Q 002273 43 LKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---A 116 (944)
Q Consensus 43 ~~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~ 116 (944)
..+.+++.++.+|..++..|+|++|+..|+++++.+|++ ..+++.+|.++...|++++|+..|+++++.+|++ +
T Consensus 10 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~ 89 (261)
T 3qky_A 10 LRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVP 89 (261)
T ss_dssp -CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhH
Confidence 455688999999999999999999999999999999998 9999999999999999999999999999998855 5
Q ss_pred HHHHHHHHHHHH--------cCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC
Q 002273 117 CAHTHCGILYKD--------EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP 188 (944)
Q Consensus 117 ~~~~~la~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 188 (944)
.+++.+|.++.. .|++++|+..|+++++.+|++......+..+... .+
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~------------------------~~ 145 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIREL------------------------RA 145 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHH------------------------HH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHH------------------------HH
Confidence 789999999999 9999999999999999999987653222111100 00
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhC
Q 002273 189 HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM---YAEAYCNMGVIYKNR----------GDLESAIACYERCLAVS 255 (944)
Q Consensus 189 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~ 255 (944)
.....++.+|.+|...|++++|+..|+++++..|+ ...+++.+|.+|..+ |++++|+..|+++++..
T Consensus 146 ~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 146 KLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 11223666777777777777777777777777666 455677777777755 67777777777777777
Q ss_pred CCcH---HHHHHHHHHHHHhhhh
Q 002273 256 PNFE---IAKNNMAIALTDLGTK 275 (944)
Q Consensus 256 p~~~---~~~~~la~~l~~~~~~ 275 (944)
|++. .+...+..++..+++.
T Consensus 226 p~~~~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 226 PDSPLLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp TTCTHHHHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHHHHh
Confidence 7764 3444455555555443
No 75
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.77 E-value=2.2e-17 Score=174.37 Aligned_cols=178 Identities=12% Similarity=0.056 Sum_probs=152.0
Q ss_pred HHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChh
Q 002273 75 LEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN---ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKP 151 (944)
Q Consensus 75 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 151 (944)
.+..|.++..++.+|..++..|++++|+..|+++++.+|++ +.+++.+|.++...|++++|+..|+++++..|++..
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~ 87 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR 87 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch
Confidence 34678899999999999999999999999999999999999 899999999999999999999999999999998754
Q ss_pred HHhHHHHHHHHHHHHHHH--------cCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002273 152 AAECLAIVLTDLGTSLKL--------AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM 223 (944)
Q Consensus 152 ~~~~la~~~~~lg~~~~~--------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 223 (944)
. ..+++.+|.++.. .|++++|+..|+++++.+|++..+...+..+....++
T Consensus 88 ~----~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~----------------- 146 (261)
T 3qky_A 88 V----PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAK----------------- 146 (261)
T ss_dssp H----HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH-----------------
T ss_pred h----HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHH-----------------
Confidence 3 4568889999999 9999999999999999999887665544433222111
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHhh
Q 002273 224 YAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN---FEIAKNNMAIALTDLG 273 (944)
Q Consensus 224 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~~~~~la~~l~~~~ 273 (944)
....++.+|.+|...|++++|+..|+++++..|+ ...++..++.++..+|
T Consensus 147 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g 199 (261)
T 3qky_A 147 LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYA 199 (261)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhc
Confidence 1334789999999999999999999999999998 5678999999999873
No 76
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.77 E-value=7.6e-17 Score=171.78 Aligned_cols=237 Identities=11% Similarity=-0.009 Sum_probs=208.2
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHH
Q 002273 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG--DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLL 283 (944)
Q Consensus 206 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~ 283 (944)
..++|+.++++++.++|++..+|+..+.++...+ ++++++..+.+++..+|++..+|...+.++..+...
T Consensus 48 ~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~-------- 119 (306)
T 3dra_A 48 YSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMEL-------- 119 (306)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH--------
T ss_pred CCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHh--------
Confidence 3467888888888888888888888888888888 899999999999999999999988888887433211
Q ss_pred HhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH--HHHHHHHHHHhhCCCCHHHHH
Q 002273 284 FRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFD--MAIVFYELAFHFNPHCAEACN 361 (944)
Q Consensus 284 ~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~--~A~~~~~~al~~~p~~~~~~~ 361 (944)
....+++++++..++++++.+|.+..+|...+.++...|.++ +++++++++++.+|.+..+|.
T Consensus 120 ---------------l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~ 184 (306)
T 3dra_A 120 ---------------NNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWS 184 (306)
T ss_dssp ---------------TTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ---------------ccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHH
Confidence 111256799999999999999999999999999999999998 999999999999999999999
Q ss_pred HHHHHHHHCCC------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhC---CCCHHHHHHH
Q 002273 362 NLGVIYKDRDN------LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDA-AAEMIEKAIAAN---PTYAEAYNNL 431 (944)
Q Consensus 362 ~la~~~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~~l~~al~~~---p~~~~a~~~l 431 (944)
..+.++...++ ++++++++++++..+|++..+|+.++.++...|+..+ ...+++++++++ |.++.++..+
T Consensus 185 ~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l 264 (306)
T 3dra_A 185 HRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETL 264 (306)
T ss_dssp HHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHH
T ss_pred HHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHH
Confidence 99999999887 9999999999999999999999999999999998555 556777777766 8889999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh-hCCCChhhhhhH
Q 002273 432 GVLYRDAGSISLAIDAYEQCLK-IDPDSRNAGQNR 465 (944)
Q Consensus 432 a~~~~~~g~~~eA~~~~~~al~-l~P~~~~a~~~~ 465 (944)
+.+|.+.|+.++|+++|+++.+ ++|-..+.+..+
T Consensus 265 a~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~ 299 (306)
T 3dra_A 265 AKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQ 299 (306)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHH
Confidence 9999999999999999999997 899887766543
No 77
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.77 E-value=2.3e-18 Score=186.36 Aligned_cols=246 Identities=18% Similarity=0.158 Sum_probs=194.4
Q ss_pred CCCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--
Q 002273 42 TLKGFEGKDALSYANILRSRNKFVDALALYEIVLEK--------DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL-- 111 (944)
Q Consensus 42 ~~~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-- 111 (944)
...|.....+..+|..+...|++++|+.+|+++++. .|....++..+|.++...|++++|+..++++++.
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 100 (311)
T 3nf1_A 21 YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIRE 100 (311)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 445667889999999999999999999999999994 5667889999999999999999999999999987
Q ss_pred ------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHH
Q 002273 112 ------DPQNACAHTHCGILYKDEGRLVEAAESYHKALSAD-----PSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKY 180 (944)
Q Consensus 112 ------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~ 180 (944)
.|....++..+|.++...|++++|+..++++++.. ++... .+.++..+|.++...|++++|+.+|
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~----~~~~~~~la~~~~~~~~~~~A~~~~ 176 (311)
T 3nf1_A 101 KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPD----VAKQLNNLALLCQNQGKYEEVEYYY 176 (311)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChH----HHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 35567789999999999999999999999999874 33332 3567889999999999999999999
Q ss_pred HHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHH
Q 002273 181 YEALKI--------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM---------------YAEAYCNMGVIYKN 237 (944)
Q Consensus 181 ~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---------------~~~~~~~la~~~~~ 237 (944)
+++++. .|....++..+|.+|...|++++|+.+++++++..+. ....+..++..+..
T Consensus 177 ~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (311)
T 3nf1_A 177 QRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKD 256 (311)
T ss_dssp HHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC------
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhh
Confidence 999998 6667788999999999999999999999999975322 12334445555666
Q ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHH
Q 002273 238 RGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALY 317 (944)
Q Consensus 238 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~ 317 (944)
.+.+.+|...++++....|....++..++.++... |++++|+.+|+++++
T Consensus 257 ~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~------------------------------g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 257 GTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQ------------------------------GKFEAAETLEEAAMR 306 (311)
T ss_dssp -CCSCCCC---------CHHHHHHHHHHHHHHHHH------------------------------TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHC------------------------------CCHHHHHHHHHHHHH
Confidence 67777888888888888888888888887776654 556999999999988
Q ss_pred hCCC
Q 002273 318 YNWH 321 (944)
Q Consensus 318 ~~p~ 321 (944)
+.|+
T Consensus 307 l~~~ 310 (311)
T 3nf1_A 307 SRKQ 310 (311)
T ss_dssp HHC-
T ss_pred Hhhc
Confidence 7664
No 78
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.77 E-value=1.7e-16 Score=169.03 Aligned_cols=236 Identities=12% Similarity=0.026 Sum_probs=215.8
Q ss_pred CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHc---CCH
Q 002273 171 GNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM--QYDTALGCYEKAALERPMYAEAYCNMGVIY----KNR---GDL 241 (944)
Q Consensus 171 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~----~~~---g~~ 241 (944)
...++|+..+.+++.++|++..+|+..+.++..++ ++++++.++++++..+|++..+|...+.++ ... +++
T Consensus 47 e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 47 EYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence 44479999999999999999999999999999999 999999999999999999999999999999 777 899
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCC
Q 002273 242 ESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWH 321 (944)
Q Consensus 242 ~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~ 321 (944)
++++.++.++++.+|.+..+|...+.++..++.. +..+++++++++++.+|.
T Consensus 127 ~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~----------------------------~~~~EL~~~~~~i~~d~~ 178 (306)
T 3dra_A 127 YREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLH----------------------------NDAKELSFVDKVIDTDLK 178 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCT----------------------------TCHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc----------------------------ChHHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999988776643 013899999999999999
Q ss_pred CHHHHHHHHHHHHHcCC------hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHH-HHHHHHHHHhhC---CCCH
Q 002273 322 YADAMYNLGVAYGEMLK------FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK-AVECYQMALSIK---PNFS 391 (944)
Q Consensus 322 ~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~---p~~~ 391 (944)
+..+|...+.++...++ ++++++++++++..+|.+..+|+.++.++...|+..+ ...+++++++++ |.++
T Consensus 179 N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 258 (306)
T 3dra_A 179 NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSS 258 (306)
T ss_dssp CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCH
T ss_pred CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCH
Confidence 99999999999999987 9999999999999999999999999999999998555 556777777776 8899
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHH
Q 002273 392 QSLNNLGVVYTVQGKMDAAAEMIEKAIA-ANPTYAEAYNNLGVL 434 (944)
Q Consensus 392 ~~~~~la~~~~~~g~~~~A~~~l~~al~-~~p~~~~a~~~la~~ 434 (944)
.++..++.++.+.|+.++|+++|+.+.+ .+|-....|...+..
T Consensus 259 ~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 259 FALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHhh
Confidence 9999999999999999999999999997 799999888877654
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.77 E-value=1.1e-16 Score=178.65 Aligned_cols=280 Identities=14% Similarity=0.052 Sum_probs=222.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------
Q 002273 117 CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY------ 190 (944)
Q Consensus 117 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------ 190 (944)
.++..+|.++...|++++|+..+++++...|.... ...+.++..+|.++...|++++|+..++++++..+..
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 92 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWF--YSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA 92 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCH--HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCch--hHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 46778899999999999999999999998876533 2345678889999999999999999999999875433
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---
Q 002273 191 APAYYNLGVVYSELMQYDTALGCYEKAALER--------PMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE--- 259 (944)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~--- 259 (944)
..++..+|.++...|++++|+..++++++.. |....++..+|.++...|++++|...+++++...+...
T Consensus 93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 172 (373)
T 1hz4_A 93 LWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ 172 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH
Confidence 2347889999999999999999999999864 33456788899999999999999999999999887632
Q ss_pred --HHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH
Q 002273 260 --IAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWH--YADAMYNLGVAYGE 335 (944)
Q Consensus 260 --~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~ 335 (944)
..+..++.+ +...|++++|...+++++...+. ....+.
T Consensus 173 ~~~~~~~la~~------------------------------~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~-------- 214 (373)
T 1hz4_A 173 QLQCLAMLIQC------------------------------SLARGDLDNARSQLNRLENLLGNGKYHSDWI-------- 214 (373)
T ss_dssp GHHHHHHHHHH------------------------------HHHHTCHHHHHHHHHHHHHHHTTSCCCHHHH--------
T ss_pred HHHHHHHHHHH------------------------------HHHcCCHHHHHHHHHHHHHHHhccCcchhHH--------
Confidence 223333333 45567789999999988765322 100000
Q ss_pred cCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHH
Q 002273 336 MLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF----SQSLNNLGVVYTVQGKMDAAA 411 (944)
Q Consensus 336 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~ 411 (944)
......++.++...|++++|...+++++...+.. ...+..++.++...|++++|+
T Consensus 215 ---------------------~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 273 (373)
T 1hz4_A 215 ---------------------SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAE 273 (373)
T ss_dssp ---------------------HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHH
T ss_pred ---------------------HHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHH
Confidence 0112245566889999999999999999877653 346788999999999999999
Q ss_pred HHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002273 412 EMIEKAIAANPT------YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 457 (944)
Q Consensus 412 ~~l~~al~~~p~------~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~ 457 (944)
..+++++...+. ..+++..+|.++...|++++|...+++++.+.+.
T Consensus 274 ~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 274 IVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 999999887432 2358889999999999999999999999998764
No 80
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.76 E-value=5.3e-17 Score=181.69 Aligned_cols=314 Identities=15% Similarity=0.113 Sum_probs=223.6
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHH----HHhCCHHHHH---------HHHHHHHh
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDS---GNVEAHIGKGICL----QMQNMGRLAF---------DSFSEAVK 110 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~----~~~g~~~~A~---------~~~~~al~ 110 (944)
.+...+..-..+..++++++|..+++++.+..+ .+...++..+... ...+.+..+. +.++++-.
T Consensus 11 ~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~ 90 (378)
T 3q15_A 11 RVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIET 90 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhc
Confidence 455666666677899999999999998866432 3444443332222 1223333233 44444322
Q ss_pred cCCC-C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 002273 111 LDPQ-N----ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK 185 (944)
Q Consensus 111 ~~p~-~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~ 185 (944)
.... + ...++.+|..+...|++++|+..|++++++.+...+ ....+.++..+|.++...|++++|+..++++++
T Consensus 91 ~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~ 169 (378)
T 3q15_A 91 PQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSD-DIEKAEFHFKVAEAYYHMKQTHVSMYHILQALD 169 (378)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCC-hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 1111 1 235677899999999999999999999987654322 244677899999999999999999999999998
Q ss_pred hCCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002273 186 IDPH-------YAPAYYNLGVVYSELMQYDTALGCYEKAALERP------MYAEAYCNMGVIYKNRGDLESAIACYERCL 252 (944)
Q Consensus 186 ~~p~-------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al 252 (944)
..+. ...++..+|.+|...|++++|+++|+++++..+ ....++.++|.+|..+|++++|+.++++++
T Consensus 170 ~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al 249 (378)
T 3q15_A 170 IYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAA 249 (378)
T ss_dssp HHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7432 255788999999999999999999999998633 124578899999999999999999999988
Q ss_pred HhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002273 253 AVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA 332 (944)
Q Consensus 253 ~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 332 (944)
.+.... .+|....++..+|.+
T Consensus 250 ~~~~~~-----------------------------------------------------------~~~~~~~~~~~la~~ 270 (378)
T 3q15_A 250 KVSREK-----------------------------------------------------------VPDLLPKVLFGLSWT 270 (378)
T ss_dssp HHHHHH-----------------------------------------------------------CGGGHHHHHHHHHHH
T ss_pred HHHHhh-----------------------------------------------------------CChhHHHHHHHHHHH
Confidence 742100 122235566777888
Q ss_pred HHHcCChHHHHHHHHHHHhhC-----CCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 002273 333 YGEMLKFDMAIVFYELAFHFN-----PHCAEACNNLGVIYKDRDN---LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ 404 (944)
Q Consensus 333 ~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 404 (944)
+...|++++|+.++++++++. +.....+..++.++...++ +.+|+.++++. ...+....++..+|.+|...
T Consensus 271 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~ 349 (378)
T 3q15_A 271 LCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESS 349 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHC
Confidence 888888888888888888773 3334456667777777777 77777777762 22333455777888888888
Q ss_pred CCHHHHHHHHHHHHHhC
Q 002273 405 GKMDAAAEMIEKAIAAN 421 (944)
Q Consensus 405 g~~~~A~~~l~~al~~~ 421 (944)
|++++|+.+|+++++..
T Consensus 350 g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 350 CHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp TCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 88888888888888754
No 81
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.76 E-value=2.4e-15 Score=177.69 Aligned_cols=419 Identities=7% Similarity=-0.053 Sum_probs=284.1
Q ss_pred CCCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC---HHHHHHHHHHHHhcCC--CCH
Q 002273 42 TLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNM---GRLAFDSFSEAVKLDP--QNA 116 (944)
Q Consensus 42 ~~~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p--~~~ 116 (944)
..+|.+...|..++......++++.+...|++++...|.....|...+......++ ++.+...|++++...| .+.
T Consensus 60 ~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv 139 (679)
T 4e6h_A 60 EEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDL 139 (679)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCH
T ss_pred HHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCH
Confidence 45677899999999999999999999999999999999999999999999888899 9999999999999884 677
Q ss_pred HHHHHHHHHHHHcCCH----HH----HHHHHHHHHHc----CCCChhHHhHHHHHHHHHH--HHHHHcCChHHHHHHHHH
Q 002273 117 CAHTHCGILYKDEGRL----VE----AAESYHKALSA----DPSYKPAAECLAIVLTDLG--TSLKLAGNTQDGIQKYYE 182 (944)
Q Consensus 117 ~~~~~la~~~~~~g~~----~~----A~~~~~~al~~----~p~~~~~~~~la~~~~~lg--~~~~~~g~~~~A~~~~~~ 182 (944)
..|..........++. ++ ....|++++.. ++.....+........... .-+..+++.+.+..+|++
T Consensus 140 ~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~r 219 (679)
T 4e6h_A 140 SLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKT 219 (679)
T ss_dssp HHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHH
Confidence 8888777666665543 33 44788888864 4544444333222211000 001123456778888888
Q ss_pred HHhhCCCCHH-HHHHHHHHH-------------HHcCCHHHHHHHHHHHHHh-------CCCC-----------------
Q 002273 183 ALKIDPHYAP-AYYNLGVVY-------------SELMQYDTALGCYEKAALE-------RPMY----------------- 224 (944)
Q Consensus 183 al~~~p~~~~-~~~~la~~~-------------~~~g~~~~A~~~~~~al~~-------~p~~----------------- 224 (944)
++........ .|......- ....+|+.|...+.+.-.. .|..
T Consensus 220 aL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~ 299 (679)
T 4e6h_A 220 LLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDV 299 (679)
T ss_dssp HTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCH
T ss_pred HHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHH
Confidence 8864222221 221111000 0112233333333332110 0100
Q ss_pred --HHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhh-HHHHHhhc-CCC---
Q 002273 225 --AEAYCNMGVIYKNRG-------DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGR-ALLLFRLN-GSN--- 290 (944)
Q Consensus 225 --~~~~~~la~~~~~~g-------~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~-a~~~~~~~-~~~--- 290 (944)
...|..........+ ..+.....|++++...|.++..|...+..+...+....+. .+...... .+.
T Consensus 300 ~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~ 379 (679)
T 4e6h_A 300 QQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAV 379 (679)
T ss_dssp HHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHH
Confidence 122222222211111 1223445666666666666666666666665555433222 22211111 111
Q ss_pred CCchhHHHhhhcCCHHHHHHHHHHHHHh-----------CCC-----------CHHHHHHHHHHHHHcCChHHHHHHHHH
Q 002273 291 FQSPFFELVKLEGDINQGVAYYKKALYY-----------NWH-----------YADAMYNLGVAYGEMLKFDMAIVFYEL 348 (944)
Q Consensus 291 ~~~~~~~l~~~~~~~~~A~~~~~~al~~-----------~p~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~ 348 (944)
+...++.+....|++++|..+|++++.. .|. ...+|...+....+.|+.+.|..+|.+
T Consensus 380 Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~ 459 (679)
T 4e6h_A 380 LAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGK 459 (679)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1112344556678889999999999875 243 345788899999999999999999999
Q ss_pred HHhh-CCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---C
Q 002273 349 AFHF-NPHCAEACNNLGVIYKDRD-NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP---T 423 (944)
Q Consensus 349 al~~-~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p---~ 423 (944)
+++. .+....+|...+.+....+ +++.|.++|+++++..|+++..+..++......|+.+.|..+|++++...| .
T Consensus 460 A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~ 539 (679)
T 4e6h_A 460 CRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHL 539 (679)
T ss_dssp HHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTH
T ss_pred HHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHH
Confidence 9988 4455777887787777765 489999999999999999999999999999999999999999999999887 3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChh
Q 002273 424 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 460 (944)
Q Consensus 424 ~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~ 460 (944)
...+|......-...|+.+.+.+.++++++..|++..
T Consensus 540 ~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 540 LKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence 5678888888889999999999999999999999764
No 82
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.76 E-value=2.3e-17 Score=198.70 Aligned_cols=186 Identities=13% Similarity=0.006 Sum_probs=169.5
Q ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q 002273 44 KGFEGKDALSYANILRSRNKFVDALALYEIVL--------EKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115 (944)
Q Consensus 44 ~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al--------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 115 (944)
+|.++...+..| ...|++++|++.|++++ +.+|++..+++.+|.++...|++++|+..|+++++.+|++
T Consensus 390 ~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~ 466 (681)
T 2pzi_A 390 DPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWR 466 (681)
T ss_dssp CTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCC
T ss_pred CCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcch
Confidence 344555666555 78999999999999999 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH
Q 002273 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 195 (944)
Q Consensus 116 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 195 (944)
..+++.+|.++..+|++++|+..|+++++++|++..+ +.++|.++...|++++ +..|+++++.+|++..+++
T Consensus 467 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~-------~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~ 538 (681)
T 2pzi_A 467 WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAP-------KLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAF 538 (681)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHH-------HHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHH-------HHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHH
Confidence 9999999999999999999999999999999998775 6788888889999999 9999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 002273 196 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240 (944)
Q Consensus 196 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 240 (944)
++|.++..+|++++|+..|+++++.+|++..++.++|.++...++
T Consensus 539 ~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 539 GLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 999999999999999999999999999999999999999987665
No 83
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.76 E-value=1.1e-18 Score=191.18 Aligned_cols=321 Identities=14% Similarity=0.111 Sum_probs=139.3
Q ss_pred HhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002273 59 RSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAES 138 (944)
Q Consensus 59 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 138 (944)
...|++++|.+++++. +++.+|..+|.++.+.|++++|++.|.++ .++..+...+..+...|++++|+.+
T Consensus 14 ~~~~~ld~A~~fae~~-----~~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 14 EHIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhC-----CChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 4567888999998887 33468899999999999999999999764 4566788888888889999999998
Q ss_pred HHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002273 139 YHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA 218 (944)
Q Consensus 139 ~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 218 (944)
++.+.+..++ +. +...++.+|.+.|++.++.+.++ .|+ ..++..+|..+...|+|++|..+|.++
T Consensus 84 l~~ark~~~~-~~-------i~~~Li~~Y~Klg~l~e~e~f~~-----~pn-~~a~~~IGd~~~~~g~yeeA~~~Y~~a- 148 (449)
T 1b89_A 84 LQMARKKARE-SY-------VETELIFALAKTNRLAELEEFIN-----GPN-NAHIQQVGDRCYDEKMYDAAKLLYNNV- 148 (449)
T ss_dssp ---------------------------------CHHHHTTTTT-----CC-----------------CTTTHHHHHHHT-
T ss_pred HHHHHHhCcc-ch-------hHHHHHHHHHHhCCHHHHHHHHc-----CCc-HHHHHHHHHHHHHcCCHHHHHHHHHHh-
Confidence 8888775333 22 35667777888888888887774 243 358889999999999999999999876
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHH
Q 002273 219 LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFEL 298 (944)
Q Consensus 219 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l 298 (944)
..+..+|.++.++|++++|++.++++ +++..|.....++...+
T Consensus 149 -------~n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~------------------------- 191 (449)
T 1b89_A 149 -------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGK------------------------- 191 (449)
T ss_dssp -------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTT-------------------------
T ss_pred -------hhHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcC-------------------------
Confidence 46788899999999999999999988 45677777666665544
Q ss_pred hhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC--CCHHHH
Q 002273 299 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR--DNLDKA 376 (944)
Q Consensus 299 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--g~~~~A 376 (944)
+++.|..+... +. .+++-...+...|.+.|++++|+.++++++.+++....++..+|.+|.+- ++..+.
T Consensus 192 -----ef~lA~~~~l~-L~---~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~eh 262 (449)
T 1b89_A 192 -----EFRLAQMCGLH-IV---VHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREH 262 (449)
T ss_dssp -----CHHHHHHTTTT-TT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -----cHHHHHHHHHH-HH---hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 44666544443 11 23343445667777777777777777777777777777777777776653 456666
Q ss_pred HHHHHHHHhhCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHcC
Q 002273 377 VECYQMALSIKP-----NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA------------NPTYAEAYNNLGVLYRDAG 439 (944)
Q Consensus 377 ~~~~~~al~~~p-----~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~------------~p~~~~a~~~la~~~~~~g 439 (944)
++.|...+.+.| .....|..+..+|...++++.|+..+-+.... .+.+.+.++.....|. +
T Consensus 263 l~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~ 340 (449)
T 1b89_A 263 LELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--E 340 (449)
T ss_dssp HHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--H
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--h
Confidence 666666666555 55667777777777777777776654433221 3445666666555555 3
Q ss_pred CHHHHHHHHHHHH
Q 002273 440 SISLAIDAYEQCL 452 (944)
Q Consensus 440 ~~~eA~~~~~~al 452 (944)
+..+++..+..++
T Consensus 341 ~~p~~l~~ll~~l 353 (449)
T 1b89_A 341 FKPLLLNDLLMVL 353 (449)
T ss_dssp HCGGGHHHHHHHH
T ss_pred cCHHHHHHHHHHH
Confidence 3344455555555
No 84
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.75 E-value=2.4e-17 Score=177.31 Aligned_cols=184 Identities=18% Similarity=0.099 Sum_probs=155.2
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHHH
Q 002273 63 KFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQ------NACAHTHCGILYKDEGRLVEAA 136 (944)
Q Consensus 63 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~ 136 (944)
++++|+..|+++ |.++...|++++|+..|++++++.+. .+.++..+|.+|..+|++++|+
T Consensus 32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 97 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (292)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 488888888887 56788999999999999999987432 2578999999999999999999
Q ss_pred HHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHH
Q 002273 137 ESYHKALSADPSYKPAAECLAIVLTDLGTSLKLA-GNTQDGIQKYYEALKIDPHY------APAYYNLGVVYSELMQYDT 209 (944)
Q Consensus 137 ~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~ 209 (944)
.+|++++++.+..... ...+.++..+|.++... |++++|+.+|++++++.|.. ..++..+|.++..+|++++
T Consensus 98 ~~~~~Al~l~~~~g~~-~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 98 DSLENAIQIFTHRGQF-RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 9999999987754332 23466789999999996 99999999999999997754 5678999999999999999
Q ss_pred HHHHHHHHHHhCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Q 002273 210 ALGCYEKAALERPMYAE-------AYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 261 (944)
Q Consensus 210 A~~~~~~al~~~p~~~~-------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 261 (944)
|+.+|+++++..|.+.. .+..+|.++..+|++++|+.+|+++++++|+....
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 235 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS 235 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 99999999999887543 67899999999999999999999999999986543
No 85
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.74 E-value=2.8e-17 Score=198.05 Aligned_cols=188 Identities=14% Similarity=-0.017 Sum_probs=162.9
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 002273 185 KIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAA--------LERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP 256 (944)
Q Consensus 185 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al--------~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 256 (944)
..+|+++.+++..+ ...|++++|++.+++++ +.+|++..+++.+|.++..+|++++|+..|+++++.+|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p 464 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG 464 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc
Confidence 34788887777766 78899999999999999 88899999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 002273 257 NFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM 336 (944)
Q Consensus 257 ~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 336 (944)
++..++..++.++...+ ++++|+..|+++++.+|+++.++.++|.++...
T Consensus 465 ~~~~a~~~lg~~~~~~g------------------------------~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~ 514 (681)
T 2pzi_A 465 WRWRLVWYRAVAELLTG------------------------------DYDSATKHFTEVLDTFPGELAPKLALAATAELA 514 (681)
T ss_dssp CCHHHHHHHHHHHHHHT------------------------------CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcC------------------------------CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence 99988888888766544 558999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 002273 337 LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK 406 (944)
Q Consensus 337 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 406 (944)
|++++ +..|+++++++|++..+++++|.++...|++++|++.|+++++++|++..+++++|.++...++
T Consensus 515 g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 515 GNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp TCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred CChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 99999 9999999999999999999999999999999999999999999999999999999999877665
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.74 E-value=3.2e-17 Score=176.29 Aligned_cols=140 Identities=15% Similarity=0.143 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHHHc-CChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHH---
Q 002273 323 ADAMYNLGVAYGEM-LKFDMAIVFYELAFHFNPHC------AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ--- 392 (944)
Q Consensus 323 ~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--- 392 (944)
..++..+|.+|... |++++|+.+|++++++.|.. ..++.++|.++..+|++++|+.+|++++++.|++..
T Consensus 117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 196 (292)
T 1qqe_A 117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQW 196 (292)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGG
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccH
Confidence 45688899999996 99999999999999987654 567899999999999999999999999999887643
Q ss_pred ----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHH--HcCCHHHHHHHHHHHHhhCCCChhh
Q 002273 393 ----SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE-----AYNNLGVLYR--DAGSISLAIDAYEQCLKIDPDSRNA 461 (944)
Q Consensus 393 ----~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~-----a~~~la~~~~--~~g~~~eA~~~~~~al~l~P~~~~a 461 (944)
++.++|.++..+|++++|+.+|+++++++|+... .+..++..+. ..+++++|+..|++++.++|.+...
T Consensus 197 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~ 276 (292)
T 1qqe_A 197 SLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITI 276 (292)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHH
Confidence 6789999999999999999999999999987654 3455666664 4578999999999999998876443
Q ss_pred h
Q 002273 462 G 462 (944)
Q Consensus 462 ~ 462 (944)
.
T Consensus 277 ~ 277 (292)
T 1qqe_A 277 L 277 (292)
T ss_dssp H
T ss_pred H
Confidence 3
No 87
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.73 E-value=1.4e-17 Score=159.45 Aligned_cols=142 Identities=19% Similarity=0.265 Sum_probs=83.6
Q ss_pred hhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHH
Q 002273 299 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE 378 (944)
Q Consensus 299 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 378 (944)
+...|++++|+..+++++...|+++..++.+|.+|...|++++|++.|+++++++|+++.++..+|.++...|++++|+.
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVE 86 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHH
Confidence 34445556666666666555555555555666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 002273 379 CYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEM-IEKAIAANPTYAEAYNNLGVLYRDAGS 440 (944)
Q Consensus 379 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~-l~~al~~~p~~~~a~~~la~~~~~~g~ 440 (944)
+|+++++++|+++.+++++|.+|...|++++|.+. ++++++++|+++.++..++.++...|+
T Consensus 87 ~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 87 CYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 66666666666666666666666666665554443 355666666666665555555555553
No 88
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.72 E-value=2.9e-16 Score=155.22 Aligned_cols=163 Identities=18% Similarity=0.231 Sum_probs=157.2
Q ss_pred hhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHH
Q 002273 299 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVE 378 (944)
Q Consensus 299 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 378 (944)
+...|++++|+..++++++..|.+..++..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|++
T Consensus 18 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~ 97 (186)
T 3as5_A 18 HAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVP 97 (186)
T ss_dssp HHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHH
Confidence 45567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002273 379 CYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 458 (944)
Q Consensus 379 ~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~ 458 (944)
+++++++..|.+..++..+|.++...|++++|+.+++++++..|++..++..+|.++...|++++|..+++++++++|++
T Consensus 98 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 177 (186)
T 3as5_A 98 LLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGA 177 (186)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hhh
Q 002273 459 RNA 461 (944)
Q Consensus 459 ~~a 461 (944)
...
T Consensus 178 ~~~ 180 (186)
T 3as5_A 178 SVE 180 (186)
T ss_dssp CGG
T ss_pred hhh
Confidence 654
No 89
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.72 E-value=7.7e-18 Score=184.46 Aligned_cols=357 Identities=12% Similarity=0.062 Sum_probs=202.1
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (944)
.+..|..+|..+.+.|++++|++.|.++ +++..+...+.++...|++++|+.+++.+.+..+ ++.+...++.+|
T Consensus 31 ~~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~-~~~i~~~Li~~Y 104 (449)
T 1b89_A 31 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR-ESYVETELIFAL 104 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCc-cchhHHHHHHHH
Confidence 3468999999999999999999999764 4667899999999999999999999999888544 377888999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q 002273 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ 206 (944)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 206 (944)
.+.|++.++.++++. |+. . .+..+|..+...|++++|+.+|.++ ..|..+|.++.++|+
T Consensus 105 ~Klg~l~e~e~f~~~-----pn~-~-------a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~ 163 (449)
T 1b89_A 105 AKTNRLAELEEFING-----PNN-A-------HIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGE 163 (449)
T ss_dssp ----CHHHHTTTTTC-----C------------------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTC
T ss_pred HHhCCHHHHHHHHcC-----CcH-H-------HHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhcc
Confidence 999999999888752 432 1 4888999999999999999999976 478899999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhh
Q 002273 207 YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRL 286 (944)
Q Consensus 207 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~ 286 (944)
|++|++.++++ .++..|.....++...|+++.|..+... +...|++. ..+.
T Consensus 164 yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~l---~~lv-------------------- 214 (449)
T 1b89_A 164 YQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADEL---EELI-------------------- 214 (449)
T ss_dssp HHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHHH---HHHH--------------------
T ss_pred HHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhhH---HHHH--------------------
Confidence 99999999999 4789999999999999999999777665 33444432 1222
Q ss_pred cCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CChHHHHHHHHHHHhhCC-----CCHHH
Q 002273 287 NGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEM--LKFDMAIVFYELAFHFNP-----HCAEA 359 (944)
Q Consensus 287 ~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p-----~~~~~ 359 (944)
.+|...|.+++|+.++++++..++.+..++..+|.+|.+- ++..+.++.|...+.+.| ++...
T Consensus 215 ----------~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~ 284 (449)
T 1b89_A 215 ----------NYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHL 284 (449)
T ss_dssp ----------HHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTC
T ss_pred ----------HHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 2366678889999999999999999999999999998765 467788888887777777 77889
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCCCCH
Q 002273 360 CNNLGVIYKDRDNLDKAVECYQMALSI------------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI--AANPTYA 425 (944)
Q Consensus 360 ~~~la~~~~~~g~~~~A~~~~~~al~~------------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al--~~~p~~~ 425 (944)
|..+..+|...++++.|+...-+.... .+.+.+.++.....|. ++...++..+..++ .+++
T Consensus 285 w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l~~~ld~--- 359 (449)
T 1b89_A 285 WAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVLSPRLDH--- 359 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHHGGGCCH---
T ss_pred HHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHHHhccCc---
Confidence 999999999999999999876655433 5677888888888777 55566777787777 3443
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhhHHHHhhhccCCChHHHH
Q 002273 426 EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLF 481 (944)
Q Consensus 426 ~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~ 481 (944)
......+.+.|+..-...+++.+...+-. ..|-.+.-.|+.+.+.+.+.
T Consensus 360 ---~r~v~~~~~~~~l~l~~~yl~~v~~~n~~----~vnealn~l~ieeed~~~lr 408 (449)
T 1b89_A 360 ---TRAVNYFSKVKQLPLVKPYLRSVQNHNNK----SVNESLNNLFITEEDYQALR 408 (449)
T ss_dssp ---HHHHHHHHHTTCTTTTHHHHHHHHTTCCH----HHHHHHHHHHHHTTCHHHHH
T ss_pred ---HHHHHHHHHcCCcHHHHHHHHHHHHhhHH----HHHHHHHHHHHhhhhHHHHH
Confidence 23445667888888888888766644322 22333444566666655443
No 90
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.72 E-value=6.8e-17 Score=164.19 Aligned_cols=169 Identities=15% Similarity=0.128 Sum_probs=142.0
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHhCCHHHHHHHHHHHHh
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIG----------------KGICLQMQNMGRLAFDSFSEAVK 110 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----------------la~~~~~~g~~~~A~~~~~~al~ 110 (944)
+++.++..|..++..|++++|+..|+++++.+|+++.+++. +|.++...|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 57789999999999999999999999999999999999999 99999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhhCC
Q 002273 111 LDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG--NTQDGIQKYYEALKIDP 188 (944)
Q Consensus 111 ~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~p 188 (944)
++|+++.+++.+|.++...|++++|+..|+++++++|++..++. .+|.++...| +...+...+.+++...|
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~-------~lg~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANI-------FLGNYYYLTAEQEKKKLETDYKKLSSPTK 155 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH-------HHHHHHHHHHHHHHHHHHHHHC---CCCH
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-------HHHHHHHHHhHHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999999999999999999999988744 4444444333 34566777777654333
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002273 189 HYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM 223 (944)
Q Consensus 189 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 223 (944)
...+++.+|.++...|++++|+.+|+++++++|+
T Consensus 156 -~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 156 -MQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp -HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred -hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 2346777888888889999999999999998887
No 91
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.72 E-value=4.9e-14 Score=166.57 Aligned_cols=387 Identities=11% Similarity=-0.032 Sum_probs=276.0
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC---HHHHHHHH
Q 002273 63 KFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGR---LVEAAESY 139 (944)
Q Consensus 63 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~ 139 (944)
...+-+..|++.+..+|.+...|..++......+.++.+...|++++...|.....|...+....+.++ ++.+...|
T Consensus 47 ~~~d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp CCSCHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 345667788999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHcCC--CChhHHhHHHHHHHHHHHHHHHcCCh--------HHHHHHHHHHHhh----CCCCHHHHHHHHHHHH---
Q 002273 140 HKALSADP--SYKPAAECLAIVLTDLGTSLKLAGNT--------QDGIQKYYEALKI----DPHYAPAYYNLGVVYS--- 202 (944)
Q Consensus 140 ~~al~~~p--~~~~~~~~la~~~~~lg~~~~~~g~~--------~~A~~~~~~al~~----~p~~~~~~~~la~~~~--- 202 (944)
++++...| .+.+.|.. ........++. +...+.|++++.. ++....+|........
T Consensus 127 eRal~~~~~~~sv~LW~~-------Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~ 199 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLS-------YITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWK 199 (679)
T ss_dssp HHHTCSSSCCCCHHHHHH-------HHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCC
T ss_pred HHHHHhcCCCCCHHHHHH-------HHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhcc
Confidence 99999984 34444332 22222223332 3345788888864 6667777776665543
Q ss_pred ------HcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHH-------------HHcCCHHHHHHHHHHHHHh-------C
Q 002273 203 ------ELMQYDTALGCYEKAALERPMYAE-AYCNMGVIY-------------KNRGDLESAIACYERCLAV-------S 255 (944)
Q Consensus 203 ------~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~-------------~~~g~~~~A~~~~~~al~~-------~ 255 (944)
.+++.+.+..+|++++.......+ .|......- ....+|..|...+...-.. .
T Consensus 200 ~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~ 279 (679)
T 4e6h_A 200 PVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNL 279 (679)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred ccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcc
Confidence 345678899999999975223222 221111111 1112344444444432111 1
Q ss_pred CCc-----------------H--HHHHHHHHHHHHhhh------------hhhhhHHHHHhhcCCCCCchhHHHhhhcCC
Q 002273 256 PNF-----------------E--IAKNNMAIALTDLGT------------KTYGRALLLFRLNGSNFQSPFFELVKLEGD 304 (944)
Q Consensus 256 p~~-----------------~--~~~~~la~~l~~~~~------------~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~ 304 (944)
|.. . ..|..........+. ..+.+++... ...+.++..++.+....++
T Consensus 280 p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~ 358 (679)
T 4e6h_A 280 PITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNT 358 (679)
T ss_dssp CSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSC
T ss_pred ccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCc
Confidence 111 1 122222222111110 0011111111 1122233345566777888
Q ss_pred HHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-----------CCC-----------CHHHHH
Q 002273 305 INQGV-AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF-----------NPH-----------CAEACN 361 (944)
Q Consensus 305 ~~~A~-~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----------~p~-----------~~~~~~ 361 (944)
.++|. ..|++++...|.+...+..++......|++++|.++|++++.. .|. ...+|.
T Consensus 359 ~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi 438 (679)
T 4e6h_A 359 DSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYC 438 (679)
T ss_dssp CTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHH
Confidence 88997 9999999999999999999999999999999999999999975 243 345788
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 002273 362 NLGVIYKDRDNLDKAVECYQMALSI-KPNFSQSLNNLGVVYTVQG-KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 439 (944)
Q Consensus 362 ~la~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g-~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g 439 (944)
..+.+..+.|+.+.|...|.+|++. .+....++...|.+....+ +++.|.++|+++++..|+++..+...+......|
T Consensus 439 ~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~ 518 (679)
T 4e6h_A 439 VYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVN 518 (679)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCC
Confidence 8888888899999999999999987 4455677777777777765 4899999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCC
Q 002273 440 SISLAIDAYEQCLKIDPD 457 (944)
Q Consensus 440 ~~~eA~~~~~~al~l~P~ 457 (944)
+.+.|...|++++...|+
T Consensus 519 ~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 519 EESQVKSLFESSIDKISD 536 (679)
T ss_dssp CHHHHHHHHHHHTTTSSS
T ss_pred CHHHHHHHHHHHHHhcCC
Confidence 999999999999999885
No 92
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.72 E-value=4.9e-16 Score=153.55 Aligned_cols=171 Identities=18% Similarity=0.208 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHH
Q 002273 82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLT 161 (944)
Q Consensus 82 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 161 (944)
...++.+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+..++++++..|.+... +.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~ 80 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKV-------AT 80 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-------HH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH-------HH
Confidence 45566666677777777777777777766666666677777777777777777777777777766665443 55
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 002273 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDL 241 (944)
Q Consensus 162 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 241 (944)
.+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+.+++++++..|.+..++..+|.++...|++
T Consensus 81 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 160 (186)
T 3as5_A 81 VLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRH 160 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCH
Confidence 56666666677777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHhCCCcH
Q 002273 242 ESAIACYERCLAVSPNFE 259 (944)
Q Consensus 242 ~~A~~~~~~al~~~p~~~ 259 (944)
++|+..++++++..|++.
T Consensus 161 ~~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 161 EEALPHFKKANELDEGAS 178 (186)
T ss_dssp HHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHcCCCch
Confidence 777777777777766543
No 93
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.70 E-value=9.2e-16 Score=157.92 Aligned_cols=210 Identities=12% Similarity=0.077 Sum_probs=147.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH---HHH
Q 002273 190 YAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY---AEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEI---AKN 263 (944)
Q Consensus 190 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~ 263 (944)
.+..++.+|..+...|++++|+..|+++++..|.+ ..+++.+|.++...|++++|+..|+++++.+|++.. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 35667778888888888888888888888877765 367788888888888888888888888888887654 556
Q ss_pred HHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q 002273 264 NMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAI 343 (944)
Q Consensus 264 ~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 343 (944)
.++.++...+.. ....+..++..+...|++++|+
T Consensus 83 ~~g~~~~~~~~~----------------------------------------------~~~~~~~~~~~~~~~~~~~~A~ 116 (225)
T 2yhc_A 83 MRGLTNMALDDS----------------------------------------------ALQGFFGVDRSDRDPQQARAAF 116 (225)
T ss_dssp HHHHHHHHHHC------------------------------------------------------------CCHHHHHHH
T ss_pred HHHHHHHhhhhh----------------------------------------------hhhhhhccchhhcCcHHHHHHH
Confidence 666665543321 1112334556666677888888
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002273 344 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 423 (944)
Q Consensus 344 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 423 (944)
..|+++++..|++..+...+..+....+ ........+|.+|...|++++|+..|+++++..|+
T Consensus 117 ~~~~~~l~~~P~~~~a~~a~~~l~~~~~-----------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~ 179 (225)
T 2yhc_A 117 SDFSKLVRGYPNSQYTTDATKRLVFLKD-----------------RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPD 179 (225)
T ss_dssp HHHHHHHTTCTTCTTHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHCcCChhHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcC
Confidence 8888888888877654432222111100 01223467899999999999999999999999998
Q ss_pred CH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhh
Q 002273 424 YA---EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 462 (944)
Q Consensus 424 ~~---~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~ 462 (944)
++ ++++.+|.+|.++|++++|++.++++....|++.+.+
T Consensus 180 ~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~~ 221 (225)
T 2yhc_A 180 TQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEHH 221 (225)
T ss_dssp SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCCT
T ss_pred CCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhhc
Confidence 75 6899999999999999999999999999999876543
No 94
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.70 E-value=9.7e-15 Score=156.15 Aligned_cols=244 Identities=11% Similarity=0.024 Sum_probs=197.1
Q ss_pred HHHHHhCCCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC----------HHHHHHHHHHHHhcCCCCHHHHHHHH
Q 002273 55 ANILRSRNKFV-DALALYEIVLEKDSGNVEAHIGKGICLQMQNM----------GRLAFDSFSEAVKLDPQNACAHTHCG 123 (944)
Q Consensus 55 A~~~~~~g~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la 123 (944)
.....+.|++. +|+.++++++..+|++..+|...+.++...+. +++++.++.+++..+|++..+|...+
T Consensus 36 ~~~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~ 115 (331)
T 3dss_A 36 VFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRC 115 (331)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 33445677776 79999999999999999999999999988776 68999999999999999999999999
Q ss_pred HHHHHcCC--HHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 002273 124 ILYKDEGR--LVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGN-TQDGIQKYYEALKIDPHYAPAYYNLGVV 200 (944)
Q Consensus 124 ~~~~~~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~la~~ 200 (944)
.++...++ +++++.++.++++.+|.+..++ ...+.+....|. ++++++++.++++.+|.+..+|..++.+
T Consensus 116 wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW-------~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~l 188 (331)
T 3dss_A 116 WLLSRLPEPNWARELELCARFLEADERNFHCW-------DYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCL 188 (331)
T ss_dssp HHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHH-------HHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred HHHhccCcccHHHHHHHHHHHHHhCCCCHHHH-------HHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 99999984 8999999999999999998874 444555555677 5899999999999999999999999999
Q ss_pred HHHc--------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhC
Q 002273 201 YSEL--------------MQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR-----------GDLESAIACYERCLAVS 255 (944)
Q Consensus 201 ~~~~--------------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~ 255 (944)
+... +.++++++++.+++..+|++..+|+.+..++... +.++++++.++++++..
T Consensus 189 l~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~ 268 (331)
T 3dss_A 189 LPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELE 268 (331)
T ss_dssp HHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhC
Confidence 9887 5689999999999999999999998766666555 45789999999999999
Q ss_pred CCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002273 256 PNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVA 332 (944)
Q Consensus 256 p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 332 (944)
|++...+..++.+...+ ...+..++...++.++++++|....-|..++..
T Consensus 269 pd~~w~l~~~~~~~~~~---------------------------~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 269 PENKWCLLTIILLMRAL---------------------------DPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 318 (331)
T ss_dssp TTCHHHHHHHHHHHHHH---------------------------CTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHhh---------------------------cccccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 98855443333222111 113455677788888888888776666555443
No 95
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.70 E-value=3.1e-16 Score=159.26 Aligned_cols=171 Identities=17% Similarity=0.148 Sum_probs=151.7
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHH
Q 002273 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTH----------------CGILYKDEGRLVEAAESYHKALS 144 (944)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~----------------la~~~~~~g~~~~A~~~~~~al~ 144 (944)
+++.++..|..++..|++++|+..|+++++.+|+++.+++. +|.++...|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999 99999999999999999999999
Q ss_pred cCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCC
Q 002273 145 ADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ--YDTALGCYEKAALERP 222 (944)
Q Consensus 145 ~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~p 222 (944)
++|++..+ +..+|.++...|++++|+..|+++++++|+++.+++.+|.+|...|+ ...+...+++++...|
T Consensus 83 ~~p~~~~~-------~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (208)
T 3urz_A 83 KAPNNVDC-------LEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK 155 (208)
T ss_dssp HCTTCHHH-------HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH
T ss_pred HCCCCHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc
Confidence 99999775 78888889999999999999999999999999999999999987764 4566777877764333
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 002273 223 MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 259 (944)
Q Consensus 223 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 259 (944)
. ..+++.+|.++...|++++|+..|+++++++|+..
T Consensus 156 ~-~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~ 191 (208)
T 3urz_A 156 M-QYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE 191 (208)
T ss_dssp H-HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH
T ss_pred h-hHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH
Confidence 2 34678899999999999999999999999999853
No 96
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.70 E-value=1e-16 Score=170.35 Aligned_cols=156 Identities=21% Similarity=0.228 Sum_probs=131.7
Q ss_pred hCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCChhHHhHHHHHHH
Q 002273 95 QNMGRLAFDSFSEAVKL--------DPQNACAHTHCGILYKDEGRLVEAAESYHKALSAD-----PSYKPAAECLAIVLT 161 (944)
Q Consensus 95 ~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~la~~~~ 161 (944)
.|++++|+..|+++++. +|....++..+|.++...|++++|+..|+++++.. ++.+. .+.++.
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~----~~~~~~ 89 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPA----VAATLN 89 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH----HHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchH----HHHHHH
Confidence 45556666666666552 24556788889999999999999999999988774 33332 356789
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCH
Q 002273 162 DLGTSLKLAGNTQDGIQKYYEALKI--------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE--------RPMYA 225 (944)
Q Consensus 162 ~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--------~p~~~ 225 (944)
.+|.++...|++++|+..|+++++. +|....++..+|.+|...|++++|+.+++++++. .|...
T Consensus 90 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 169 (283)
T 3edt_B 90 NLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVA 169 (283)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH
Confidence 9999999999999999999999988 4667889999999999999999999999999998 66677
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002273 226 EAYCNMGVIYKNRGDLESAIACYERCLAV 254 (944)
Q Consensus 226 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 254 (944)
.++..+|.++...|++++|+..++++++.
T Consensus 170 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 170 KTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 89999999999999999999999999986
No 97
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.70 E-value=1.4e-15 Score=156.49 Aligned_cols=189 Identities=13% Similarity=0.049 Sum_probs=159.4
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHH---HHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNAC---AHT 120 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~---~~~ 120 (944)
++..++.+|..++..|+|++|+..|+++++..|.+ ..+++.+|.++...|++++|+..|+++++.+|+++. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 56789999999999999999999999999999876 479999999999999999999999999999999864 789
Q ss_pred HHHHHHHH------------------cCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 002273 121 HCGILYKD------------------EGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182 (944)
Q Consensus 121 ~la~~~~~------------------~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~ 182 (944)
.+|.++.. .|++++|+..|+++++.+|++..+... +..++.+...
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a----~~~l~~~~~~------------- 145 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDA----TKRLVFLKDR------------- 145 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHH----HHHHHHHHHH-------------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHH----HHHHHHHHHH-------------
Confidence 99999876 679999999999999999998765322 1112111100
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Q 002273 183 ALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYA---EAYCNMGVIYKNRGDLESAIACYERCLAVSPNFE 259 (944)
Q Consensus 183 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 259 (944)
.......+|.+|...|++++|+..|+++++..|+++ +++..+|.++..+|++++|++.++++....|++.
T Consensus 146 -------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 146 -------LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTL 218 (225)
T ss_dssp -------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCC
T ss_pred -------HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCch
Confidence 112346788999999999999999999999998875 6789999999999999999999999888888754
No 98
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.69 E-value=4.8e-17 Score=155.68 Aligned_cols=144 Identities=15% Similarity=0.078 Sum_probs=67.6
Q ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHH
Q 002273 89 GICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLK 168 (944)
Q Consensus 89 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~ 168 (944)
|.++...|++++|+..+++++..+|+++..++.+|.+|...|++++|+..|+++++++|++..+ +..+|.++.
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a-------~~~lg~~~~ 76 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKA-------HRFLGLLYE 76 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-------HHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHH
Confidence 3444444444444444444444444444444444444444444444444444444444444332 344444444
Q ss_pred HcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHcC
Q 002273 169 LAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGC-YEKAALERPMYAEAYCNMGVIYKNRG 239 (944)
Q Consensus 169 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~-~~~al~~~p~~~~~~~~la~~~~~~g 239 (944)
..|++++|+..|+++++++|+++.+++.+|.+|...|++++|.+. ++++++++|+++.++..++.++...|
T Consensus 77 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 77 LEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred HcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 444444444444444444454555555555555555554443333 24455555555555544444444444
No 99
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.68 E-value=2.9e-14 Score=152.50 Aligned_cols=173 Identities=11% Similarity=0.068 Sum_probs=146.8
Q ss_pred HcCChH-HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 002273 169 LAGNTQ-DGIQKYYEALKIDPHYAPAYYNLGVVYSELMQ----------YDTALGCYEKAALERPMYAEAYCNMGVIYKN 237 (944)
Q Consensus 169 ~~g~~~-~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 237 (944)
..|.+. +|+..+.+++..+|++..+|+..+.++...+. +++++.++++++..+|.+..+|...+.++..
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~ 120 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 120 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc
Confidence 456654 89999999999999999999999999988776 7899999999999999999999999999999
Q ss_pred cCC--HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHH
Q 002273 238 RGD--LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKA 315 (944)
Q Consensus 238 ~g~--~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~a 315 (944)
.++ +++++.++.++++.+|.+..+|...+.++..++. .++++++++.++
T Consensus 121 l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~-----------------------------~~~eel~~~~~~ 171 (331)
T 3dss_A 121 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAV-----------------------------APAEELAFTDSL 171 (331)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-----------------------------CHHHHHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCc-----------------------------CHHHHHHHHHHH
Confidence 994 8999999999999999999999999988776553 148899999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHc--------------CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC
Q 002273 316 LYYNWHYADAMYNLGVAYGEM--------------LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR 370 (944)
Q Consensus 316 l~~~p~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 370 (944)
++.+|.+..+|..++.++... +.++++++++.+++..+|++..+|+.+..++...
T Consensus 172 I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~ 240 (331)
T 3dss_A 172 ITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAG 240 (331)
T ss_dssp HHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSS
T ss_pred HHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 999999999999999998877 3456666666666666666666666554444443
No 100
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.68 E-value=1.8e-16 Score=168.45 Aligned_cols=222 Identities=19% Similarity=0.244 Sum_probs=166.6
Q ss_pred cCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCcHHHHHHHHH
Q 002273 204 LMQYDTALGCYEKAALE--------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVS--------PNFEIAKNNMAI 267 (944)
Q Consensus 204 ~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~la~ 267 (944)
.|++++|+.+|+++++. .|....++..+|.++...|++++|+..++++++.. |....++..++.
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 44555555555555542 24456677788888888888888888888887763 333445555555
Q ss_pred HHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCh
Q 002273 268 ALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYY--------NWHYADAMYNLGVAYGEMLKF 339 (944)
Q Consensus 268 ~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~ 339 (944)
++ ...|++++|+.++++++.. +|....++..+|.++...|++
T Consensus 94 ~~------------------------------~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 143 (283)
T 3edt_B 94 LY------------------------------GKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKA 143 (283)
T ss_dssp HH------------------------------HTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCH
T ss_pred HH------------------------------HHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCH
Confidence 54 4456779999999999987 466678999999999999999
Q ss_pred HHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---------CCCCHHHHHHHHHHHH
Q 002273 340 DMAIVFYELAFHF--------NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI---------KPNFSQSLNNLGVVYT 402 (944)
Q Consensus 340 ~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---------~p~~~~~~~~la~~~~ 402 (944)
++|+.+++++++. .|....++..+|.++...|++++|+.++++++++ .+.....+..++..+.
T Consensus 144 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (283)
T 3edt_B 144 EEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREE 223 (283)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHh
Confidence 9999999999998 6666889999999999999999999999999987 4445567777777776
Q ss_pred HcCCH------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 002273 403 VQGKM------DAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID 455 (944)
Q Consensus 403 ~~g~~------~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~ 455 (944)
..+.. .++...++......|....++..+|.+|...|++++|+.+|++++++.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 224 SKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp TTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 65543 334444443333456667899999999999999999999999999864
No 101
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.68 E-value=4.7e-16 Score=143.75 Aligned_cols=116 Identities=21% Similarity=0.258 Sum_probs=78.1
Q ss_pred HhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 002273 350 FHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYN 429 (944)
Q Consensus 350 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~ 429 (944)
..++|+.++.+.++|..+++.|++++|++.|+++++++|.++.++.++|.++..+|++++|+..|+++++++|++..+++
T Consensus 6 a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 6 AYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp -CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 34566666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhhH
Q 002273 430 NLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 465 (944)
Q Consensus 430 ~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~ 465 (944)
++|.++..+|++++|++.|+++++++|++..++.++
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l 121 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGV 121 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHH
Confidence 666666666666666666666666666666665543
No 102
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.67 E-value=6.3e-16 Score=142.89 Aligned_cols=121 Identities=17% Similarity=0.183 Sum_probs=115.7
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHH
Q 002273 315 ALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSL 394 (944)
Q Consensus 315 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 394 (944)
+..++|+.++.+..+|..+++.|++++|+..|+++++++|.++.++.++|.++..+|++++|+..|+++++++|+++.++
T Consensus 5 ~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 5 LAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp --CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 44578888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002273 395 NNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 435 (944)
Q Consensus 395 ~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~ 435 (944)
+++|.++..+|++++|++.|+++++++|++.+++..++.++
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999999999999999999999999999999999998874
No 103
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.64 E-value=7.7e-14 Score=149.71 Aligned_cols=189 Identities=11% Similarity=0.022 Sum_probs=151.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-C
Q 002273 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM-QYDTALGCYEKAALERPMYAEAYCNMGVIYKNR-G 239 (944)
Q Consensus 162 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g 239 (944)
.+.......+..++|++.+.+++..+|++..+|+..+.++...+ .+++++..+++++..+|++..+|...+.++... +
T Consensus 59 ~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~ 138 (349)
T 3q7a_A 59 YFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISP 138 (349)
T ss_dssp HHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcC
Confidence 33344455566789999999999999999999999999999999 599999999999999999999999999999998 8
Q ss_pred -CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHh
Q 002273 240 -DLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYY 318 (944)
Q Consensus 240 -~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~ 318 (944)
+++++++++.++++.+|.+..+|.....++..++..... ....+.+++++++++++.
T Consensus 139 ~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~----------------------~~~~~~eELe~~~k~I~~ 196 (349)
T 3q7a_A 139 QDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRI----------------------SEAQWGSELDWCNEMLRV 196 (349)
T ss_dssp SCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCC----------------------CHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccccc----------------------chhhHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998887754100 001124777777777777
Q ss_pred CCCCHHHHHHHHHHHHHcCC-------hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC
Q 002273 319 NWHYADAMYNLGVAYGEMLK-------FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN 372 (944)
Q Consensus 319 ~p~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 372 (944)
+|.+..+|...+.++...++ ++++++++++++..+|++..+|+.+..++...|+
T Consensus 197 dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 197 DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 77777777777777777765 5666666666666666666666666666655554
No 104
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.64 E-value=2.1e-14 Score=154.06 Aligned_cols=243 Identities=10% Similarity=0.009 Sum_probs=205.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 002273 192 PAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRG-DLESAIACYERCLAVSPNFEIAKNNMAIALT 270 (944)
Q Consensus 192 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~l~ 270 (944)
.++..+..+....+..++|++++++++..+|++..+|+..+.++...+ .+++++..+++++..+|++..+|.....++.
T Consensus 55 ~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 55 DAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 344444455555666789999999999999999999999999999999 5999999999999999999999999998887
Q ss_pred Hh-hhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH--------H
Q 002273 271 DL-GTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFD--------M 341 (944)
Q Consensus 271 ~~-~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~--------~ 341 (944)
.+ + .++++++++++++++.+|.+..+|...+.+....+.++ +
T Consensus 135 ~l~~-----------------------------~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~e 185 (349)
T 3q7a_A 135 RISP-----------------------------QDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGS 185 (349)
T ss_dssp HHCC-----------------------------SCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred HhcC-----------------------------CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHH
Confidence 65 3 03489999999999999999999999999999998888 9
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH-------
Q 002273 342 AIVFYELAFHFNPHCAEACNNLGVIYKDRDN-------LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKM------- 407 (944)
Q Consensus 342 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~------- 407 (944)
++++++++++.+|.+..+|...+.++...++ ++++++++++++.++|++..+|+.+..++...|+.
T Consensus 186 ELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~ 265 (349)
T 3q7a_A 186 ELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPA 265 (349)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCccccccc
Confidence 9999999999999999999999999999887 79999999999999999999999999999887764
Q ss_pred -------------HHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhCCCChhhhh
Q 002273 408 -------------DAAAEMIEKAIAAN------PTYAEAYNNLGVLYRDAGSISLAIDAYEQCL-KIDPDSRNAGQ 463 (944)
Q Consensus 408 -------------~~A~~~l~~al~~~------p~~~~a~~~la~~~~~~g~~~eA~~~~~~al-~l~P~~~~a~~ 463 (944)
.+-.+.....+... +..+.++..|+.+|...|+.++|.++|+... +.||-..+.+.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~ 341 (349)
T 3q7a_A 266 ILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWE 341 (349)
T ss_dssp HGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred ccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHH
Confidence 22222222222222 4668899999999999999999999999987 67886554443
No 105
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.63 E-value=3.9e-16 Score=148.71 Aligned_cols=116 Identities=9% Similarity=0.089 Sum_probs=107.5
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002273 344 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 423 (944)
Q Consensus 344 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 423 (944)
..+++++.++|+++.+++.+|.++...|++++|+.+|+++++++|+++.+|.++|.++..+|++++|+..|+++++++|+
T Consensus 23 ~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~ 102 (151)
T 3gyz_A 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN 102 (151)
T ss_dssp CCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred CCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC
Confidence 45677788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 002273 424 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 459 (944)
Q Consensus 424 ~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~ 459 (944)
++.+++++|.+|..+|++++|+.+|++++++.|+.+
T Consensus 103 ~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 103 DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999999999999999999999999865
No 106
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.63 E-value=1.8e-15 Score=149.09 Aligned_cols=163 Identities=14% Similarity=0.089 Sum_probs=95.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 002273 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDE 129 (944)
Q Consensus 50 ~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 129 (944)
.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+| ++..+..++.+..
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~-- 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLEL-- 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHH--
Confidence 4555555555555555555555555555555555555555555555555555555555555555 4443333222211
Q ss_pred CCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q 002273 130 GRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDT 209 (944)
Q Consensus 130 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 209 (944)
...+...+|+..++++++.+|++..+++.+|.++...|++++
T Consensus 85 --------------------------------------~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~ 126 (176)
T 2r5s_A 85 --------------------------------------HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEE 126 (176)
T ss_dssp --------------------------------------HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHH
T ss_pred --------------------------------------HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHH
Confidence 011122335666666666666666667777777777777777
Q ss_pred HHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002273 210 ALGCYEKAALERPMY--AEAYCNMGVIYKNRGDLESAIACYERCLA 253 (944)
Q Consensus 210 A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~ 253 (944)
|+..|+++++.+|+. ..++..++.++...|+.++|+..|++++.
T Consensus 127 A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 127 ALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 777777776666654 44666667777777777777777666654
No 107
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.62 E-value=8.3e-15 Score=156.81 Aligned_cols=169 Identities=14% Similarity=0.017 Sum_probs=156.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHH
Q 002273 78 DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157 (944)
Q Consensus 78 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 157 (944)
.|.+...++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..+++++..+|+...
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~------ 186 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRY------ 186 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHH------
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHH------
Confidence 48889999999999999999999999999999999999999999999999999999999999999999995432
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHH
Q 002273 158 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY--AEAYCNMGVIY 235 (944)
Q Consensus 158 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~ 235 (944)
.....+..+...++.++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++.+|++ ..++..++.++
T Consensus 187 -~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~ 265 (287)
T 3qou_A 187 -QGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEIL 265 (287)
T ss_dssp -HHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHH
T ss_pred -HHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHH
Confidence 244556667778889999999999999999999999999999999999999999999999999998 88999999999
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 002273 236 KNRGDLESAIACYERCLA 253 (944)
Q Consensus 236 ~~~g~~~~A~~~~~~al~ 253 (944)
...|+.++|...|++++.
T Consensus 266 ~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 266 AALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHCTTCHHHHHHHHHHH
T ss_pred HHcCCCCcHHHHHHHHHH
Confidence 999999999999999875
No 108
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.62 E-value=1.8e-15 Score=149.04 Aligned_cols=156 Identities=14% Similarity=0.007 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHH
Q 002273 82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLT 161 (944)
Q Consensus 82 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 161 (944)
.+.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..++++++..| +.
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~----------- 73 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DN----------- 73 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CH-----------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-Ch-----------
Confidence 344566666666666666666666666666666666666666666666666666666666666555 32
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 002273 162 DLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVY-SELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240 (944)
Q Consensus 162 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 240 (944)
..+..++.+. ...++..+|+..++++++.+|+++.+++.+|.++...|+
T Consensus 74 ------------------------------~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~ 123 (176)
T 2r5s_A 74 ------------------------------SYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGR 123 (176)
T ss_dssp ------------------------------HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC
T ss_pred ------------------------------HHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHccc
Confidence 2222222221 122233458999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCc--HHHHHHHHHHHHHhhhhhhhh
Q 002273 241 LESAIACYERCLAVSPNF--EIAKNNMAIALTDLGTKTYGR 279 (944)
Q Consensus 241 ~~~A~~~~~~al~~~p~~--~~~~~~la~~l~~~~~~~~~~ 279 (944)
+++|+..|+++++.+|+. ..++..++.++...|+...+.
T Consensus 124 ~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 124 DEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred HHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 999999999999999986 558999999999998875443
No 109
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.62 E-value=4.5e-15 Score=160.69 Aligned_cols=139 Identities=18% Similarity=0.157 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--C----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCC------
Q 002273 323 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH--C----AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF------ 390 (944)
Q Consensus 323 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------ 390 (944)
..++..+|.+|...|++++|+.+|++++++.+. + ..++.++|.+|.. |++++|+.+|++++++.+..
T Consensus 76 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~ 154 (307)
T 2ifu_A 76 AKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQA 154 (307)
T ss_dssp HHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHH
Confidence 346778889999999999999999999887432 1 4678899999988 99999999999999887643
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhh
Q 002273 391 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY------AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 463 (944)
Q Consensus 391 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~------~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~ 463 (944)
..++.++|.+|..+|++++|+.+|++++++.|++ ..++..+|.++..+|++++|+.+|++++ ++|+......
T Consensus 155 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e 232 (307)
T 2ifu_A 155 AELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGSED 232 (307)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHH
Confidence 5688999999999999999999999999986543 3478889999999999999999999999 9998766543
No 110
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=99.61 E-value=1.8e-14 Score=163.19 Aligned_cols=338 Identities=11% Similarity=0.039 Sum_probs=210.6
Q ss_pred cEEEeecCCCccC-cHHHHHHhhhhhccCCcEEEEEEeccccC-----Chh--hHHHHHHHhhhCCceEeccCCCHHHHH
Q 002273 511 LVIGYVSPDYFTH-SVSYFIEAPLVYHDYQNYKVVVYSAVVKA-----DAK--TIRFREKVMKKGGIWRDIYGIDEKKVA 582 (944)
Q Consensus 511 lriGy~S~d~~~h-~v~~~~~~~l~~~d~~~fev~~y~~~~~~-----d~~--t~~~~~~~~~~~~~~~~~~~~~~~~~a 582 (944)
.||.++++.+-.. -+..++..+...+... .+|.+++..... ... ........ . +.....+....+.
T Consensus 1 MkI~~v~~~~p~~gG~~~~~~~l~~~L~~~-~~V~v~~~~~~g~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~l~ 74 (413)
T 3oy2_A 1 MKLIIVGAHSSVPSGYGRVMRAIVPRISKA-HEVIVFGIHAFGRSVHANIEEFDAQTAEHV----R-GLNEQGFYYSGLS 74 (413)
T ss_dssp CEEEEEEECTTCCSHHHHHHHHHHHHHTTT-SEEEEEEESCCSCCSCSSSEEEEHHHHHHH----T-TCCSTTCCHHHHH
T ss_pred CeEEEecCCCCCCCCHHHHHHHHHHHHHhc-CCeEEEeecCCCcccccccccCCccccccc----c-ccccccchHHHHH
Confidence 3678887654321 2344555555555555 777777643221 000 11111111 1 2222245567789
Q ss_pred HHhHhCCccEEEecCCCCCC-CchhhhccCC--cceeeecccCCCC------CCCCC--ccEEEecCCCCCccccccc-c
Q 002273 583 AMVREDKIDILVELTGHTAN-NKLGMMACQP--APVQVTWIGYPNT------TGLPT--IDYRITDSLADPPETKQKH-V 650 (944)
Q Consensus 583 ~~i~~d~idilvdl~g~t~~-~~~~~~a~r~--ApvQ~~~~G~p~t------~g~~~--~Dy~i~d~~~~p~~~~~~~-~ 650 (944)
+.|+..++||++--.-.... ..+..+...| -++-..|-..... .-+.. +|.+|+-.-..-.....+. .
T Consensus 75 ~~l~~~~~Div~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~S~~~~~~~~~~~~~ 154 (413)
T 3oy2_A 75 EFIDVHKPDIVMIYNDPIVIGNYLLAMGKCSHRTKIVLYVDLVSKNIRENLWWIFSHPKVVGVMAMSKCWISDICNYGCK 154 (413)
T ss_dssp HHHHHHCCSEEEEEECHHHHHHHHHHGGGCCSCCEEEEEECCCSBSCCGGGGGGGGCTTEEEEEESSTHHHHHHHHTTCC
T ss_pred HHHHhcCCCEEEEcchHHHHHHHHHHhccCCCCCceeeeccccchhhHHHHHHHHhccCCceEEEcCHHHHHHHHHcCCC
Confidence 99999999999754100000 0000011111 1112222111111 11223 3366653211111111222 4
Q ss_pred cceEEcCCCccccCCCCCCCCCCCCCCCCC--CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCceEEEecCCCCC--H
Q 002273 651 EELIRLPECFLCYTPSPEAGPVCPTPALTN--GFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCC--D 724 (944)
Q Consensus 651 e~~~~lp~~~~~~~~~~~~~~~~~~~~~~~--~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~--~ 724 (944)
+++..+|+.. ++... ...+...++++ +.++|+++++. .|..+.++++|.++.+..|+.+|+++|.+... .
T Consensus 155 ~~~~vi~ngv---d~~~~-~~~~~~~~~~~~~~~~~il~vGr~~~~Kg~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~ 230 (413)
T 3oy2_A 155 VPINIVSHFV---DTKTI-YDARKLVGLSEYNDDVLFLNMNRNTARKRLDIYVLAAARFISKYPDAKVRFLCNSHHESKF 230 (413)
T ss_dssp SCEEECCCCC---CCCCC-TTHHHHTTCGGGTTSEEEECCSCSSGGGTHHHHHHHHHHHHHHCTTCCEEEEEECCTTCSC
T ss_pred CceEEeCCCC---CHHHH-HHHHHhcCCCcccCceEEEEcCCCchhcCcHHHHHHHHHHHHhCCCcEEEEEeCCcccchh
Confidence 6777777542 11111 11222234555 67889999876 99999999999999999999999999865321 2
Q ss_pred HHHHHHHHHHHHcCCCCCc-------EEEccCccCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcc
Q 002273 725 SVRHRFLSTLEQLGLESLR-------VDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVH 796 (944)
Q Consensus 725 ~~~~~~~~~~~~~gi~~~r-------v~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~ 796 (944)
.....+++.+++.|++ ++ |.|.|.++ .++....|+.+|+++-|..+ +.|.+.+|||++|+|||+
T Consensus 231 ~l~~~~~~~~~~~~l~-~~v~~l~~vv~~~g~~~-~~~~~~~~~~adv~v~pS~~E~~~~~~lEAma~G~PvI~------ 302 (413)
T 3oy2_A 231 DLHSIALRELVASGVD-NVFTHLNKIMINRTVLT-DERVDMMYNACDVIVNCSSGEGFGLCSAEGAVLGKPLII------ 302 (413)
T ss_dssp CHHHHHHHHHHHHTCS-CHHHHHTTEEEECSCCC-HHHHHHHHHHCSEEEECCSCCSSCHHHHHHHTTTCCEEE------
T ss_pred hHHHHHHHHHHHcCcc-cccccccceeeccCcCC-HHHHHHHHHhCCEEEeCCCcCCCCcHHHHHHHcCCCEEE------
Confidence 2557888888999994 66 77888877 68899999999999888866 889999999999999999
Q ss_pred cccchhHHHhhc--------------------CCccccc-CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChH
Q 002273 797 AHNVGVSLLTKV--------------------GLKHLIA-KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQ 855 (944)
Q Consensus 797 ~~r~~~~~l~~~--------------------gl~~~v~-~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~ 855 (944)
+++|+ +-..+ |+..++. .|++++.+.. ++..|++.+.++++..++... ..|+++
T Consensus 303 -s~~~g-~~e~v~~~~~~~i~~~~~~~~~~~~G~~gl~~~~d~~~la~~i-~l~~~~~~~~~~~~~a~~~~~--~~fs~~ 377 (413)
T 3oy2_A 303 -SAVGG-ADDYFSGDCVYKIKPSAWISVDDRDGIGGIEGIIDVDDLVEAF-TFFKDEKNRKEYGKRVQDFVK--TKPTWD 377 (413)
T ss_dssp -ECCHH-HHHHSCTTTSEEECCCEEEECTTTCSSCCEEEECCHHHHHHHH-HHTTSHHHHHHHHHHHHHHHT--TSCCHH
T ss_pred -cCCCC-hHHHHccCcccccccccccccccccCcceeeCCCCHHHHHHHH-HHhcCHHHHHHHHHHHHHHHH--HhCCHH
Confidence 66652 11111 2222333 5999999999 999999999999999998874 349999
Q ss_pred HHHHHHHHHHHHHHHH
Q 002273 856 NFALGLESTYRNMWHR 871 (944)
Q Consensus 856 ~~~~~~e~~~~~~~~~ 871 (944)
.+++.++++|+++..+
T Consensus 378 ~~~~~~~~~~~~~~~~ 393 (413)
T 3oy2_A 378 DISSDIIDFFNSLLRV 393 (413)
T ss_dssp HHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999998754
No 111
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.61 E-value=1.4e-14 Score=156.90 Aligned_cols=172 Identities=15% Similarity=0.114 Sum_probs=134.6
Q ss_pred hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002273 60 SRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQM-QNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAES 138 (944)
Q Consensus 60 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 138 (944)
..|++++|.++++++.+..+.. ++. .+++++|+..|.++ |.+|...|++++|+..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHH
Confidence 4578899999999998876642 122 58899999988876 5678899999999999
Q ss_pred HHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHcCCHHHHHH
Q 002273 139 YHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH------YAPAYYNLGVVYSELMQYDTALG 212 (944)
Q Consensus 139 ~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~ 212 (944)
|.+++++.+.... ....+.++.++|.++...|++++|+.+|++++++.+. ...++.++|.+|.. |++++|+.
T Consensus 59 ~~~al~~~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 59 YLQEAEAHANNRS-LFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHcCC-HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 9999988765433 2345677888999999999999999999999887432 24577888888888 88888888
Q ss_pred HHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002273 213 CYEKAALERPMY------AEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257 (944)
Q Consensus 213 ~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 257 (944)
+|++++++.+.. ..++.++|.++..+|++++|+.+|++++.+.+.
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 187 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKE 187 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 888888876542 467778888888888888888888888776543
No 112
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.60 E-value=1.9e-14 Score=154.03 Aligned_cols=152 Identities=9% Similarity=0.026 Sum_probs=128.9
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q 002273 302 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 381 (944)
Q Consensus 302 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 381 (944)
.|++++|+..|+++++.+|+++.++..+|.++...|++++|+..+++++..+|+........+..+...++.++|+..|+
T Consensus 130 ~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~ 209 (287)
T 3qou_A 130 ESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQ 209 (287)
T ss_dssp TTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHH
Confidence 45668888888888888888888888888888888888888888888888888766666677777777888888888888
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002273 382 MALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY--AEAYNNLGVLYRDAGSISLAIDAYEQCLK 453 (944)
Q Consensus 382 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~--~~a~~~la~~~~~~g~~~eA~~~~~~al~ 453 (944)
++++.+|+++.+++++|.++...|++++|+..|+++++.+|++ ..++.+++.++...|+.++|...|++++.
T Consensus 210 ~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 210 QQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 8888888888888888888888888888888888888888887 78888888888888888888888888765
No 113
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.60 E-value=2.3e-14 Score=169.55 Aligned_cols=165 Identities=16% Similarity=0.044 Sum_probs=130.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002273 61 RNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYH 140 (944)
Q Consensus 61 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 140 (944)
.|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++.+|++..++..+|.++..+|++++|+..|+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHH
Q 002273 141 KALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSEL---MQYDTALGCYEKA 217 (944)
Q Consensus 141 ~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~a 217 (944)
++++.+|++... +..+|.++...|++++|++.|+++++.+|++..++..+|.++... |++++|++.++++
T Consensus 82 ~al~~~p~~~~~-------~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 82 QASDAAPEHPGI-------ALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHCTTCHHH-------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHhcCCCCHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 999999987654 677888888889999999999999999999999999999999999 9999999999999
Q ss_pred HHhCCCCHHHHHHHH
Q 002273 218 ALERPMYAEAYCNMG 232 (944)
Q Consensus 218 l~~~p~~~~~~~~la 232 (944)
++.+|.+...+..++
T Consensus 155 l~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 155 VAQGVGAVEPFAFLS 169 (568)
T ss_dssp HHHTCCCSCHHHHTT
T ss_pred HhcCCcccChHHHhC
Confidence 999988777766655
No 114
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.59 E-value=2.6e-15 Score=155.86 Aligned_cols=221 Identities=10% Similarity=0.005 Sum_probs=177.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH-------HHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhh
Q 002273 228 YCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNM-------AIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVK 300 (944)
Q Consensus 228 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------a~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~ 300 (944)
++..|.-+ ..+++.+|.+.|.+++..+|+..++|..+ +.++..+...
T Consensus 10 ~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~------------------------- 63 (282)
T 4f3v_A 10 LFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYS------------------------- 63 (282)
T ss_dssp HHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHT-------------------------
T ss_pred HHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHH-------------------------
Confidence 33444444 57888899999999999999999988888 6677666655
Q ss_pred hcCCHHHHHHHHHHHHHhCCCC---------------------HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHH
Q 002273 301 LEGDINQGVAYYKKALYYNWHY---------------------ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEA 359 (944)
Q Consensus 301 ~~~~~~~A~~~~~~al~~~p~~---------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 359 (944)
.+++..+++.+.+.|.. .++...++.++...|++++|.+.|+.++...|.+. .
T Consensus 64 -----~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~ 137 (282)
T 4f3v_A 64 -----RRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-V 137 (282)
T ss_dssp -----GGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-H
T ss_pred -----HHHHHHHHHHhcCChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-H
Confidence 55666666666654432 35666789999999999999999999999999888 9
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHH
Q 002273 360 CNNLGVIYKDRDNLDKAVECYQMALSIKPNF--SQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN--PT-YAEAYNNLGVL 434 (944)
Q Consensus 360 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~l~~al~~~--p~-~~~a~~~la~~ 434 (944)
.+.+|.++.+.+++++|+.+|+++.+..+.. ..+++++|.++..+|++++|+.+|++++... |. ..++++++|.+
T Consensus 138 ~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~gla 217 (282)
T 4f3v_A 138 AWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMA 217 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHH
Confidence 9999999999999999999999887653221 3589999999999999999999999998654 55 67899999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCChhhhhhHHHHhhhccCCChHHHHH
Q 002273 435 YRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDKLFE 482 (944)
Q Consensus 435 ~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~ 482 (944)
+.++|+.++|...|++++..+|+ ..+.. .+....|....+..+.++
T Consensus 218 L~~lGr~deA~~~l~~a~a~~P~-~~~~~-aL~~~~~~~~~t~~~~i~ 263 (282)
T 4f3v_A 218 RRSQGNESAAVALLEWLQTTHPE-PKVAA-ALKDPSYRLKTTTAEQIA 263 (282)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSCC-HHHHH-HHHCTTCCCCCCCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCc-HHHHH-HHhCCCCCCCCCcHHHHH
Confidence 99999999999999999999999 55544 345556655555555443
No 115
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=99.58 E-value=4.6e-13 Score=151.66 Aligned_cols=336 Identities=12% Similarity=0.095 Sum_probs=213.7
Q ss_pred CCcEEEeecCCCccCcHHHHHHhhhhhccCCcEEEEEEeccccCChh--hHHHHHHHhhhCCceEeccCCCH--------
Q 002273 509 RPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAK--TIRFREKVMKKGGIWRDIYGIDE-------- 578 (944)
Q Consensus 509 ~~lriGy~S~d~~~h~v~~~~~~~l~~~d~~~fev~~y~~~~~~d~~--t~~~~~~~~~~~~~~~~~~~~~~-------- 578 (944)
++.||.+++..+..--+...+..+.......+++|.++......+.. ...+...+. +. ....+..
T Consensus 39 ~~mkIl~v~~~~~~GG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~ 113 (416)
T 2x6q_A 39 KGRSFVHVNSTSFGGGVAEILHSLVPLLRSIGIEARWFVIEGPTEFFNVTKTFHNALQ---GN--ESLKLTEEMKELYLN 113 (416)
T ss_dssp TTCEEEEEESCSSSSTHHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHHHHHHHHT---TC--CSCCCCHHHHHHHHH
T ss_pred hccEEEEEeCCCCCCCHHHHHHHHHHHHHhCCCeEEEEEccCCcchhhhhcccceeec---cc--ccccccHHHHHHHHH
Confidence 45789999888644344455555555555567888777654321111 111111111 00 0111221
Q ss_pred --HHHHHHhHhCCccEEEecCCCCCCCchhhhccCCcceeeecccCCCCCC----------CCCccEEE-ecCCCCCccc
Q 002273 579 --KKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTG----------LPTIDYRI-TDSLADPPET 645 (944)
Q Consensus 579 --~~~a~~i~~d~idilvdl~g~t~~~~~~~~a~r~ApvQ~~~~G~p~t~g----------~~~~Dy~i-~d~~~~p~~~ 645 (944)
..+.+.|+..++||++--+.++. .+..++.+-.|+-++.-+...... +...|.+| +. ....
T Consensus 114 ~~~~~~~~l~~~~~Dvv~~~~~~~~--~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~i~~~----s~~~ 187 (416)
T 2x6q_A 114 VNRENSKFIDLSSFDYVLVHDPQPA--ALIEFYEKKSPWLWRCHIDLSSPNREFWEFLRRFVEKYDRYIFHL----PEYV 187 (416)
T ss_dssp HHHHHHHSSCGGGSSEEEEESSTTG--GGGGGSCCCSCEEEECCSCCSSCCHHHHHHHHHHHTTSSEEEESS----GGGS
T ss_pred HHHHHHHHHhhcCCCEEEEeccchh--hHHHHHHhcCCEEEEEccccCCccHHHHHHHHHHHHhCCEEEEec----hHHH
Confidence 13455667779999976443332 122222333677666544332111 12345544 22 1122
Q ss_pred ccccc-cceEEcCCCccccCCCCCCC-CC--------CCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCce
Q 002273 646 KQKHV-EELIRLPECFLCYTPSPEAG-PV--------CPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSR 713 (944)
Q Consensus 646 ~~~~~-e~~~~lp~~~~~~~~~~~~~-~~--------~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~ 713 (944)
...+. +++..+|+.. ++....+ +. +...+++.+.++++++++. .|..+.++++|..+.+..|+.+
T Consensus 188 ~~~~~~~~~~vi~ngv---d~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~ 264 (416)
T 2x6q_A 188 QPELDRNKAVIMPPSI---DPLSEKNVELKQTEILRILERFDVDPEKPIITQVSRFDPWKGIFDVIEIYRKVKEKIPGVQ 264 (416)
T ss_dssp CTTSCTTTEEECCCCB---CTTSTTTSCCCHHHHHHHHHHTTCCTTSCEEEEECCCCTTSCHHHHHHHHHHHHHHCTTCE
T ss_pred HhhCCccceEEeCCCC---ChhhhcccccChhhHHHHHHHhCCCCCCcEEEEEeccccccCHHHHHHHHHHHHHhCCCeE
Confidence 22333 6777888642 1111100 00 0122455666677777754 7899999999999999999999
Q ss_pred EEEecCCCC-CHHHHHHHHHHHHHcCCCCCcEEEccCccC--cHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEE
Q 002273 714 LVVKCKPFC-CDSVRHRFLSTLEQLGLESLRVDLLPLILL--NHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCV 789 (944)
Q Consensus 714 l~~~~~~~~-~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~--~~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvv 789 (944)
|+++|.+.. ++..+..+.+..++.|+ .++|.|+|.++. ..+....|+.+|+++-|..+ +.|++.+|||++|+|||
T Consensus 265 l~i~G~g~~~~~~~~~~l~~~~~~~~~-~~~V~~~G~~~~~~~~~~~~~~~~ad~~v~ps~~E~~~~~~lEAma~G~PvI 343 (416)
T 2x6q_A 265 LLLVGVMAHDDPEGWIYFEKTLRKIGE-DYDVKVLTNLIGVHAREVNAFQRASDVILQMSIREGFGLTVTEAMWKGKPVI 343 (416)
T ss_dssp EEEEECCCTTCHHHHHHHHHHHHHHTT-CTTEEEEEGGGTCCHHHHHHHHHHCSEEEECCSSCSSCHHHHHHHHTTCCEE
T ss_pred EEEEecCcccchhHHHHHHHHHHHhCC-CCcEEEecccCCCCHHHHHHHHHhCCEEEECCCcCCCccHHHHHHHcCCCEE
Confidence 999987632 23456677888888999 589999986542 35788889999999888766 77999999999999999
Q ss_pred ecCCCcccccchh-HHHhhcCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 002273 790 TMAGSVHAHNVGV-SLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNM 868 (944)
Q Consensus 790 t~~g~~~~~r~~~-~~l~~~gl~~~v~~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 868 (944)
+ +++++ .-+-.-|-..++..|.+++.+...++.+|++.++++++..++...+. |+++.+++.+++.|+++
T Consensus 344 ~-------~~~~g~~e~i~~~~~g~l~~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~--fs~~~~~~~~~~~~~~l 414 (416)
T 2x6q_A 344 G-------RAVGGIKFQIVDGETGFLVRDANEAVEVVLYLLKHPEVSKEMGAKAKERVRKN--FIITKHMERYLDILNSL 414 (416)
T ss_dssp E-------ESCHHHHHHCCBTTTEEEESSHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH--TBHHHHHHHHHHHHHTC
T ss_pred E-------ccCCCChhheecCCCeEEECCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH--cCHHHHHHHHHHHHHHh
Confidence 9 55542 11111144556666999999999999999999999999998877544 89999999999999864
No 116
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.58 E-value=4.7e-15 Score=141.22 Aligned_cols=118 Identities=16% Similarity=0.148 Sum_probs=112.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Q 002273 308 GVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK 387 (944)
Q Consensus 308 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 387 (944)
+-..++++++.+|+++.+++.+|.++...|++++|+..|++++.++|+++.+|+++|.++...|++++|+.+|+++++++
T Consensus 21 ~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~ 100 (151)
T 3gyz_A 21 SGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100 (151)
T ss_dssp TSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence 33456677788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 002273 388 PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 425 (944)
Q Consensus 388 p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~ 425 (944)
|+++.+++++|.+|..+|++++|+..|++++++.|+..
T Consensus 101 P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999999999999999864
No 117
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.57 E-value=1.2e-14 Score=138.40 Aligned_cols=120 Identities=10% Similarity=-0.018 Sum_probs=109.2
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 002273 343 IVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 422 (944)
Q Consensus 343 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p 422 (944)
-..|++++.++|++...++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++.++|
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 34678888889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhh
Q 002273 423 TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 462 (944)
Q Consensus 423 ~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~ 462 (944)
+++.+++++|.+|..+|++++|+..|+++++++|+++...
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 9999999999999999999999999999999999877653
No 118
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.57 E-value=9.9e-15 Score=151.48 Aligned_cols=208 Identities=16% Similarity=0.113 Sum_probs=179.8
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHH-------HHHHHHhCCHHHHHHHHHHHHhcCCCCH----
Q 002273 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGK-------GICLQMQNMGRLAFDSFSEAVKLDPQNA---- 116 (944)
Q Consensus 48 ~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l-------a~~~~~~g~~~~A~~~~~~al~~~p~~~---- 116 (944)
...+|..|.-+ ..+++.+|.+.|.++++.+|+..++|..+ +.++...++..+++..+++.+.+.|...
T Consensus 7 ~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~ 85 (282)
T 4f3v_A 7 LASLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARI 85 (282)
T ss_dssp HHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEE
T ss_pred HHHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhh
Confidence 45677788876 68999999999999999999999999999 8999999999999999999999877543
Q ss_pred -----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHH
Q 002273 117 -----------------CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQK 179 (944)
Q Consensus 117 -----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~ 179 (944)
.+...++.++...|++++|.+.|+.++...|++. +.+.+|.++.+.+++++|+..
T Consensus 86 ~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~--------~~~~~a~l~~~~~r~~dA~~~ 157 (282)
T 4f3v_A 86 AIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL--------VAWMKAVVYGAAERWTDVIDQ 157 (282)
T ss_dssp ECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH--------HHHHHHHHHHHTTCHHHHHHH
T ss_pred ccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH--------HHHHHHHHHHHcCCHHHHHHH
Confidence 3445588999999999999999999988777543 367788899999999999999
Q ss_pred HHHHHhhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002273 180 YYEALKIDPHY--APAYYNLGVVYSELMQYDTALGCYEKAALER--PM-YAEAYCNMGVIYKNRGDLESAIACYERCLAV 254 (944)
Q Consensus 180 ~~~al~~~p~~--~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 254 (944)
|+++.+..+.. ..+++.+|.++..+|++++|+.+|++++... |. ..++++.+|.++..+|+.++|...|++++..
T Consensus 158 l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 158 VKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 99877653221 4589999999999999999999999998644 55 6679999999999999999999999999999
Q ss_pred CCCcHHHHHHH
Q 002273 255 SPNFEIAKNNM 265 (944)
Q Consensus 255 ~p~~~~~~~~l 265 (944)
+|+ ..+...+
T Consensus 238 ~P~-~~~~~aL 247 (282)
T 4f3v_A 238 HPE-PKVAAAL 247 (282)
T ss_dssp SCC-HHHHHHH
T ss_pred CCc-HHHHHHH
Confidence 999 6665544
No 119
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=99.56 E-value=9.9e-15 Score=164.08 Aligned_cols=335 Identities=13% Similarity=0.076 Sum_probs=208.6
Q ss_pred CCcEEEeecCCCccC--cHHHHHHhhhhhccCCcEEEEEEeccccCChhhHHHHHHHhhhCCceEeccCC-------CHH
Q 002273 509 RPLVIGYVSPDYFTH--SVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGI-------DEK 579 (944)
Q Consensus 509 ~~lriGy~S~d~~~h--~v~~~~~~~l~~~d~~~fev~~y~~~~~~d~~t~~~~~~~~~~~~~~~~~~~~-------~~~ 579 (944)
++.||.++++.|..+ .+...+..+...+. +.+|++++....... ...+... ..-....+... ...
T Consensus 3 ~~mkIl~v~~~~~p~~gG~~~~~~~l~~~L~--g~~v~v~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 76 (394)
T 3okp_A 3 ASRKTLVVTNDFPPRIGGIQSYLRDFIATQD--PESIVVFASTQNAEE-AHAYDKT---LDYEVIRWPRSVMLPTPTTAH 76 (394)
T ss_dssp -CCCEEEEESCCTTSCSHHHHHHHHHHTTSC--GGGEEEEEECSSHHH-HHHHHTT---CSSEEEEESSSSCCSCHHHHH
T ss_pred CCceEEEEeCccCCccchHHHHHHHHHHHhc--CCeEEEEECCCCccc-hhhhccc---cceEEEEccccccccchhhHH
Confidence 357899999877643 23455555666553 456666655432211 1112111 11112222211 135
Q ss_pred HHHHHhHhCCccEEEecCCCCCCCchhhhc-cCCcc-eeeecccCCCCCC------------CCCccEEEecCCCCCccc
Q 002273 580 KVAAMVREDKIDILVELTGHTANNKLGMMA-CQPAP-VQVTWIGYPNTTG------------LPTIDYRITDSLADPPET 645 (944)
Q Consensus 580 ~~a~~i~~d~idilvdl~g~t~~~~~~~~a-~r~Ap-vQ~~~~G~p~t~g------------~~~~Dy~i~d~~~~p~~~ 645 (944)
.+.+.|+..++||++--... ....+..++ ....| +-.++-|+..... +...|.+|+-.-..-...
T Consensus 77 ~l~~~~~~~~~Dvv~~~~~~-~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~ 155 (394)
T 3okp_A 77 AMAEIIREREIDNVWFGAAA-PLALMAGTAKQAGASKVIASTHGHEVGWSMLPGSRQSLRKIGTEVDVLTYISQYTLRRF 155 (394)
T ss_dssp HHHHHHHHTTCSEEEESSCT-TGGGGHHHHHHTTCSEEEEECCSTHHHHTTSHHHHHHHHHHHHHCSEEEESCHHHHHHH
T ss_pred HHHHHHHhcCCCEEEECCcc-hHHHHHHHHHhcCCCcEEEEeccchhhhhhcchhhHHHHHHHHhCCEEEEcCHHHHHHH
Confidence 78899999999999832211 111122111 22334 5445555422111 123566664311000001
Q ss_pred cccc--ccceEEcCCCccccCCCCCCC-------CCCCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCceE
Q 002273 646 KQKH--VEELIRLPECFLCYTPSPEAG-------PVCPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRL 714 (944)
Q Consensus 646 ~~~~--~e~~~~lp~~~~~~~~~~~~~-------~~~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l 714 (944)
...+ .+++..+|+.. ++....+ ..+...+++++.++++.+++. .|..+.++++|.++....|+.+|
T Consensus 156 ~~~~~~~~~~~vi~ngv---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~~~~~l 232 (394)
T 3okp_A 156 KSAFGSHPTFEHLPSGV---DVKRFTPATPEDKSATRKKLGFTDTTPVIACNSRLVPRKGQDSLIKAMPQVIAARPDAQL 232 (394)
T ss_dssp HHHHCSSSEEEECCCCB---CTTTSCCCCHHHHHHHHHHTTCCTTCCEEEEESCSCGGGCHHHHHHHHHHHHHHSTTCEE
T ss_pred HHhcCCCCCeEEecCCc---CHHHcCCCCchhhHHHHHhcCCCcCceEEEEEeccccccCHHHHHHHHHHHHhhCCCeEE
Confidence 1112 35777788632 1111111 011123456676778877765 89999999999999999999999
Q ss_pred EEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCC--------CCcccHHHhhhcCC
Q 002273 715 VVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY--------AGTTTTCESLYMGV 786 (944)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~--------~~~~t~~eal~~gv 786 (944)
+++|.+ .....+++.+ .|+ .++|.|.|.++ ..+....|..+|+++-|..+ +.|++.+|||++|+
T Consensus 233 ~i~G~g----~~~~~l~~~~--~~~-~~~v~~~g~~~-~~~~~~~~~~ad~~v~ps~~~~~~~~~e~~~~~~~Ea~a~G~ 304 (394)
T 3okp_A 233 LIVGSG----RYESTLRRLA--TDV-SQNVKFLGRLE-YQDMINTLAAADIFAMPARTRGGGLDVEGLGIVYLEAQACGV 304 (394)
T ss_dssp EEECCC----TTHHHHHHHT--GGG-GGGEEEEESCC-HHHHHHHHHHCSEEEECCCCBGGGTBCCSSCHHHHHHHHTTC
T ss_pred EEEcCc----hHHHHHHHHH--hcc-cCeEEEcCCCC-HHHHHHHHHhCCEEEecCccccccccccccCcHHHHHHHcCC
Confidence 999875 3445555554 666 48999999987 68999999999999988864 66899999999999
Q ss_pred cEEecCCCcccccchhHHHhhcCCcccccC--CHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHH
Q 002273 787 PCVTMAGSVHAHNVGVSLLTKVGLKHLIAK--NEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLEST 864 (944)
Q Consensus 787 Pvvt~~g~~~~~r~~~~~l~~~gl~~~v~~--~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~ 864 (944)
|||+-....+..-+ .-| ..++.. |.+++++...++..|++.+.++++..++...+. |+++.+++.++++
T Consensus 305 PvI~~~~~~~~e~i------~~~-~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~--~s~~~~~~~~~~~ 375 (394)
T 3okp_A 305 PVIAGTSGGAPETV------TPA-TGLVVEGSDVDKLSELLIELLDDPIRRAAMGAAGRAHVEAE--WSWEIMGERLTNI 375 (394)
T ss_dssp CEEECSSTTGGGGC------CTT-TEEECCTTCHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH--TBHHHHHHHHHHH
T ss_pred CEEEeCCCChHHHH------hcC-CceEeCCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHH
Confidence 99993322221111 113 444444 999999999999999999999999999887543 8999999999999
Q ss_pred HHHHHH
Q 002273 865 YRNMWH 870 (944)
Q Consensus 865 ~~~~~~ 870 (944)
|+++-+
T Consensus 376 ~~~~~r 381 (394)
T 3okp_A 376 LQSEPR 381 (394)
T ss_dssp HHSCCC
T ss_pred HHHhcc
Confidence 987543
No 120
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.56 E-value=1.7e-13 Score=127.09 Aligned_cols=135 Identities=41% Similarity=0.645 Sum_probs=129.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002273 324 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 403 (944)
Q Consensus 324 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 403 (944)
.+++.+|.++...|++++|+..++++++..|.+...+..+|.++...|++++|+..++++++..|.+..++..+|.++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002273 404 QGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 458 (944)
Q Consensus 404 ~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~ 458 (944)
.|++++|+..++++++..|.+..++..+|.++...|++++|...|+++++.+|++
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence 9999999999999999999999999999999999999999999999999999863
No 121
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.55 E-value=4e-14 Score=150.94 Aligned_cols=197 Identities=11% Similarity=-0.004 Sum_probs=164.2
Q ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 002273 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (944)
Q Consensus 46 ~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (944)
..+..++.+|..++..|+|++|+..|+++++.+|++..+++.+|.++...|++++|+..++++++++|++..+++.+|.+
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q 002273 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELM 205 (944)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 205 (944)
+..+|++++|+..|+++++++|++............. ..++...........+.+..+...++.++ .|
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~ 149 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR----------IAKKKRWNSIEERRIHQESELHSYLTRLI--AA 149 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH----------HHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHH----------HHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HH
Confidence 9999999999999999999998764332211111111 12223333334456777778877777765 68
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHh
Q 002273 206 QYDTALGCYEKAALERPMYAEAYCNMGVIYKNR-GDLESAIACYERCLAV 254 (944)
Q Consensus 206 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~ 254 (944)
++++|++.++++++.+|.+......++.++... +.+++|.+.|.++.+.
T Consensus 150 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 150 ERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 999999999999999999888888888777776 7788999999888664
No 122
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.54 E-value=3.2e-13 Score=137.32 Aligned_cols=177 Identities=15% Similarity=0.015 Sum_probs=156.1
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC----CHHHHHHHHH
Q 002273 65 VDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEG----RLVEAAESYH 140 (944)
Q Consensus 65 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g----~~~~A~~~~~ 140 (944)
.+|+.+|+++.+. .++.+++.+|.++...+++++|+.+|+++++. .++.+++.+|.+|.. + ++++|+.+|+
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 3678899999876 78999999999999999999999999999875 588999999999998 7 9999999999
Q ss_pred HHHHcCCCChhHHhHHHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHH----cCCHHHH
Q 002273 141 KALSADPSYKPAAECLAIVLTDLGTSLKL----AGNTQDGIQKYYEALKIDP--HYAPAYYNLGVVYSE----LMQYDTA 210 (944)
Q Consensus 141 ~al~~~p~~~~~~~~la~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~----~g~~~~A 210 (944)
++.+. .+.. +++.+|.++.. .+++++|+.+|+++.+..+ .++.+++.||.+|.. .+++++|
T Consensus 78 ~A~~~--g~~~-------a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A 148 (212)
T 3rjv_A 78 KAVEA--GSKS-------GEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKA 148 (212)
T ss_dssp HHHHT--TCHH-------HHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHH
T ss_pred HHHHC--CCHH-------HHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 99764 4444 46778888877 8899999999999999887 358999999999999 8999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHhCC
Q 002273 211 LGCYEKAALERPMYAEAYCNMGVIYKNR-G-----DLESAIACYERCLAVSP 256 (944)
Q Consensus 211 ~~~~~~al~~~p~~~~~~~~la~~~~~~-g-----~~~~A~~~~~~al~~~p 256 (944)
+.+|+++++. +.++.+++.+|.+|... | ++++|+.+|+++.+...
T Consensus 149 ~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 149 SEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 9999999998 66788999999999874 3 89999999999998753
No 123
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.54 E-value=1.7e-15 Score=166.12 Aligned_cols=193 Identities=14% Similarity=0.045 Sum_probs=167.6
Q ss_pred hCCCHHHHHHHHHH----HHHhCCCCHHHHHHHHHHHH------------HhCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 002273 60 SRNKFVDALALYEI----VLEKDSGNVEAHIGKGICLQ------------MQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (944)
Q Consensus 60 ~~g~~~~A~~~~~~----al~~~p~~~~~~~~la~~~~------------~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (944)
..+.+++|+..++. ++...|+. ++..+|.... .++++++|+..++++++.+|+++.++..+|
T Consensus 77 ~~~~~e~al~~~~~Ge~~~l~i~p~~--ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g 154 (336)
T 1p5q_A 77 LPYGLERAIQRMEKGEHSIVYLKPSY--AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERG 154 (336)
T ss_dssp CCHHHHHHHTTCCTTCEEEEEECTTT--TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHhcCCCCCeEEEEECCcc--ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHH
Confidence 34578899998888 88888876 4555554432 567788899999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCh--------hHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHH
Q 002273 124 ILYKDEGRLVEAAESYHKALSADPSYK--------PAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYY 195 (944)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~p~~~--------~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 195 (944)
.+++..|++++|+..|++++++.|++. ......+.++.++|.++...|++++|+..|+++++++|++..+++
T Consensus 155 ~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 234 (336)
T 1p5q_A 155 TVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLS 234 (336)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 999999999999999999999999873 122233557899999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHh
Q 002273 196 NLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESA-IACYERCLAV 254 (944)
Q Consensus 196 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~ 254 (944)
.+|.+|..+|++++|+..|+++++++|++..++..++.++..+|++++| ...|++++..
T Consensus 235 ~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 235 RRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999 5567776643
No 124
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.53 E-value=4.6e-13 Score=136.12 Aligned_cols=113 Identities=16% Similarity=0.083 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHH----CCCHH
Q 002273 305 INQGVAYYKKALYYNWHYADAMYNLGVAYGE----MLKFDMAIVFYELAFHFNP--HCAEACNNLGVIYKD----RDNLD 374 (944)
Q Consensus 305 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~----~g~~~ 374 (944)
+++|+.+|+++.+ +.++.+++.+|.+|.. .+++++|+.+|+++.+..+ .++.+++++|.+|.. .++++
T Consensus 69 ~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~ 146 (212)
T 3rjv_A 69 YPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDV 146 (212)
T ss_dssp HHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHH
T ss_pred HHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHH
Confidence 3444444444432 2345555555555554 5566666666666665555 235566666666665 55666
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHh
Q 002273 375 KAVECYQMALSIKPNFSQSLNNLGVVYTVQ-G-----KMDAAAEMIEKAIAA 420 (944)
Q Consensus 375 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~-g-----~~~~A~~~l~~al~~ 420 (944)
+|+.+|+++.+. +.++.+++++|.+|... | ++++|+.+|+++.+.
T Consensus 147 ~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 147 KASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 666666666655 44455666666665543 2 566666666666555
No 125
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.53 E-value=2e-14 Score=136.94 Aligned_cols=120 Identities=10% Similarity=0.008 Sum_probs=114.1
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC
Q 002273 309 VAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKP 388 (944)
Q Consensus 309 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 388 (944)
-..|++++..+|++...++.+|.++...|++++|+..|++++..+|.++.+++.+|.++...|++++|+.+|+++++++|
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 86 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI 86 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence 34578888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 002273 389 NFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 428 (944)
Q Consensus 389 ~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~ 428 (944)
+++.+++++|.++..+|++++|+..|+++++++|+++...
T Consensus 87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 87 XEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 9999999999999999999999999999999998876553
No 126
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.53 E-value=1.3e-14 Score=158.90 Aligned_cols=153 Identities=14% Similarity=0.117 Sum_probs=142.6
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---------------HHHHHHHHHH
Q 002273 302 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---------------AEACNNLGVI 366 (944)
Q Consensus 302 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~~ 366 (944)
.+++++|+..+++++...|..+.++..+|.++...|++++|+..|+++++++|.+ ..++.++|.+
T Consensus 126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 4556777778888888888889999999999999999999999999999999998 6999999999
Q ss_pred HHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH-H
Q 002273 367 YKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLA-I 445 (944)
Q Consensus 367 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA-~ 445 (944)
+...|++++|+.+|+++++++|+++.+++++|.+|..+|++++|+..|+++++++|++..++..++.++..+|++++| .
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 285 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREK 285 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 5
Q ss_pred HHHHHHHhh
Q 002273 446 DAYEQCLKI 454 (944)
Q Consensus 446 ~~~~~al~l 454 (944)
..|++++..
T Consensus 286 ~~~~~~~~~ 294 (336)
T 1p5q_A 286 KLYANMFER 294 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 577777654
No 127
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=99.52 E-value=6.3e-14 Score=158.20 Aligned_cols=331 Identities=13% Similarity=0.082 Sum_probs=210.5
Q ss_pred CCCCCcEEEeecCCCccC--cHHHHHHhhhhhccCCcEEEEEEeccccCChhh---------HHHHHHHhhhCCceEecc
Q 002273 506 DPERPLVIGYVSPDYFTH--SVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKT---------IRFREKVMKKGGIWRDIY 574 (944)
Q Consensus 506 ~~~~~lriGy~S~d~~~h--~v~~~~~~~l~~~d~~~fev~~y~~~~~~d~~t---------~~~~~~~~~~~~~~~~~~ 574 (944)
...++.+|.++++.+... .+...+..+........++|++++......... .++.. . ..+.. .
T Consensus 16 ~~~~~MkIl~i~~~~~~~~gG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~-~ 89 (406)
T 2gek_A 16 PRGSHMRIGMVCPYSFDVPGGVQSHVLQLAEVLRDAGHEVSVLAPASPHVKLPDYVVSGGKAVPIPY--N---GSVAR-L 89 (406)
T ss_dssp -----CEEEEECSSCTTSCCHHHHHHHHHHHHHHHTTCEEEEEESCCTTSCCCTTEEECCCCC-----------------
T ss_pred cCCCcceEEEEeccCCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCccccCCcccccCCcEEeccc--c---CCccc-c
Confidence 345678999999776443 223455556565555678898887654332100 00000 0 00000 0
Q ss_pred CCC---HHHHHHHhHhCCccEEEecCCCCCCCchhhhccC--CcceeeecccCCCCC------------CCCCccEEEec
Q 002273 575 GID---EKKVAAMVREDKIDILVELTGHTANNKLGMMACQ--PAPVQVTWIGYPNTT------------GLPTIDYRITD 637 (944)
Q Consensus 575 ~~~---~~~~a~~i~~d~idilvdl~g~t~~~~~~~~a~r--~ApvQ~~~~G~p~t~------------g~~~~Dy~i~d 637 (944)
.+. ...+.+.|+..++||++--..+.... ..++.| -.|+-++.-+..... -+...|.+|+-
T Consensus 90 ~~~~~~~~~l~~~l~~~~~Dii~~~~~~~~~~--~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~d~ii~~ 167 (406)
T 2gek_A 90 RFGPATHRKVKKWIAEGDFDVLHIHEPNAPSL--SMLALQAAEGPIVATFHTSTTKSLTLSVFQGILRPYHEKIIGRIAV 167 (406)
T ss_dssp -CCHHHHHHHHHHHHHHCCSEEEEECCCSSSH--HHHHHHHEESSEEEEECCCCCSHHHHHHHHSTTHHHHTTCSEEEES
T ss_pred cccHHHHHHHHHHHHhcCCCEEEECCccchHH--HHHHHHhcCCCEEEEEcCcchhhhhHHHHHHHHHHHHhhCCEEEEC
Confidence 111 25688888889999998655444322 222222 467766665543221 12456776653
Q ss_pred CCCCCccccccc-ccceEEcCCCccc--cCCCCCCCCCCCCCCCCCCCeEEEecCCC---CcCCHHHHHHHHHHHhHcCC
Q 002273 638 SLADPPETKQKH-VEELIRLPECFLC--YTPSPEAGPVCPTPALTNGFITFGSFNNL---AKITPKVLQVWARILCAVPN 711 (944)
Q Consensus 638 ~~~~p~~~~~~~-~e~~~~lp~~~~~--~~~~~~~~~~~~~~~~~~~~~~f~~~~~~---~K~~~~~~~~~~~il~~~p~ 711 (944)
.-..-......| .+++ .+|+..-. |.+.. ....++++.++++++++. .|..+.++++|.++.+..|+
T Consensus 168 s~~~~~~~~~~~~~~~~-vi~~~v~~~~~~~~~------~~~~~~~~~~~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~~ 240 (406)
T 2gek_A 168 SDLARRWQMEALGSDAV-EIPNGVDVASFADAP------LLDGYPREGRTVLFLGRYDEPRKGMAVLLAALPKLVARFPD 240 (406)
T ss_dssp SHHHHHHHHHHHSSCEE-ECCCCBCHHHHHTCC------CCTTCSCSSCEEEEESCTTSGGGCHHHHHHHHHHHHTTSTT
T ss_pred CHHHHHHHHHhcCCCcE-EecCCCChhhcCCCc------hhhhccCCCeEEEEEeeeCccccCHHHHHHHHHHHHHHCCC
Confidence 211000011122 3456 77753210 22221 112333345567777766 79999999999999999999
Q ss_pred ceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCC--CCCCcccHHHhhhcCCcEE
Q 002273 712 SRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTF--PYAGTTTTCESLYMGVPCV 789 (944)
Q Consensus 712 ~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~--~~~~~~t~~eal~~gvPvv 789 (944)
.+|+++|.+. . ..+++.++++ .++|.|.|.++ ..+....|..+||+|-|. ..+.|++.+|||++|+|||
T Consensus 241 ~~l~i~G~~~----~-~~l~~~~~~~---~~~v~~~g~~~-~~~~~~~~~~adv~v~ps~~~e~~~~~~~Ea~a~G~PvI 311 (406)
T 2gek_A 241 VEILIVGRGD----E-DELREQAGDL---AGHLRFLGQVD-DATKASAMRSADVYCAPHLGGESFGIVLVEAMAAGTAVV 311 (406)
T ss_dssp CEEEEESCSC----H-HHHHHHTGGG---GGGEEECCSCC-HHHHHHHHHHSSEEEECCCSCCSSCHHHHHHHHHTCEEE
T ss_pred eEEEEEcCCc----H-HHHHHHHHhc---cCcEEEEecCC-HHHHHHHHHHCCEEEecCCCCCCCchHHHHHHHcCCCEE
Confidence 9999998762 2 5666666655 58999999987 578899999999999885 4477999999999999999
Q ss_pred ecCCCcccccchhH-HHhhcCCccccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 002273 790 TMAGSVHAHNVGVS-LLTKVGLKHLIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 866 (944)
Q Consensus 790 t~~g~~~~~r~~~~-~l~~~gl~~~v~--~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 866 (944)
+ +++++. -+-.-|-..+++ .|.+++++...++.+|++.+.++++..++... .|+++.++..++++|+
T Consensus 312 ~-------~~~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~---~~s~~~~~~~~~~~~~ 381 (406)
T 2gek_A 312 A-------SDLDAFRRVLADGDAGRLVPVDDADGMAAALIGILEDDQLRAGYVARASERVH---RYDWSVVSAQIMRVYE 381 (406)
T ss_dssp E-------CCCHHHHHHHTTTTSSEECCTTCHHHHHHHHHHHHHCHHHHHHHHHHHHHHGG---GGBHHHHHHHHHHHHH
T ss_pred E-------ecCCcHHHHhcCCCceEEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHH
Confidence 9 555411 111123445555 79999999999999999999999999988864 4999999999999999
Q ss_pred HHHH
Q 002273 867 NMWH 870 (944)
Q Consensus 867 ~~~~ 870 (944)
++..
T Consensus 382 ~~~~ 385 (406)
T 2gek_A 382 TVSG 385 (406)
T ss_dssp HHCC
T ss_pred HHHh
Confidence 8754
No 128
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.52 E-value=5.6e-14 Score=132.85 Aligned_cols=120 Identities=10% Similarity=0.007 Sum_probs=103.0
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002273 344 VFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT 423 (944)
Q Consensus 344 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~ 423 (944)
..|++++..+|++...++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 45677778888888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhh
Q 002273 424 YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 463 (944)
Q Consensus 424 ~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~ 463 (944)
++.+++.+|.+|..+|++++|+.+|+++++++|+++....
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 124 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEA 124 (142)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHH
Confidence 9999999999999999999999999999999888776543
No 129
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.49 E-value=9.5e-14 Score=147.97 Aligned_cols=101 Identities=20% Similarity=0.189 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 002273 158 IVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKN 237 (944)
Q Consensus 158 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 237 (944)
..+..+|..+...|++++|+..|+++++.+|++..+++++|.+|...|++++|+..++++++.+|++..+++.+|.++..
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE 84 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35788888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCc
Q 002273 238 RGDLESAIACYERCLAVSPNF 258 (944)
Q Consensus 238 ~g~~~~A~~~~~~al~~~p~~ 258 (944)
+|++++|+..|+++++++|++
T Consensus 85 ~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 85 MESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp TTCHHHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHhCccc
Confidence 999999999999999988765
No 130
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.49 E-value=8.6e-13 Score=133.97 Aligned_cols=134 Identities=16% Similarity=0.288 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q 002273 324 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV 403 (944)
Q Consensus 324 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 403 (944)
..++.+|..+...|++++|+..|++++ +| ++.+++.+|.++...|++++|+..|+++++.+|++..+++++|.++..
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 356789999999999999999999986 33 689999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChh
Q 002273 404 QGKMDAAAEMIEKAIAANPTYA----------------EAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 460 (944)
Q Consensus 404 ~g~~~~A~~~l~~al~~~p~~~----------------~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~ 460 (944)
.|++++|+..|+++++..|++. .+++++|.++...|++++|++.|+++++++|++..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 156 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH 156 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccccc
Confidence 9999999999999999888766 99999999999999999999999999999998743
No 131
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.49 E-value=7.7e-14 Score=131.92 Aligned_cols=127 Identities=13% Similarity=0.020 Sum_probs=114.8
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC
Q 002273 310 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN 389 (944)
Q Consensus 310 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 389 (944)
..|++++..+|++...++.+|..+...|++++|+..|++++..+|+++.+++.+|.++...|++++|+.+|+++++++|+
T Consensus 5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 84 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN 84 (142)
T ss_dssp ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 45677788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002273 390 FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 436 (944)
Q Consensus 390 ~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~ 436 (944)
++.+++++|.++..+|++++|+..|+++++++|+++........+..
T Consensus 85 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 131 (142)
T 2xcb_A 85 EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGA 131 (142)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHH
Confidence 99999999999999999999999999999999988766555444443
No 132
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=99.49 E-value=5e-14 Score=158.36 Aligned_cols=268 Identities=17% Similarity=0.171 Sum_probs=177.1
Q ss_pred HHHHHHhHhCCccEEEecCCCCCCCchhhhccC----CcceeeecccCCC-CCC------------CCCccEEEecCCCC
Q 002273 579 KKVAAMVREDKIDILVELTGHTANNKLGMMACQ----PAPVQVTWIGYPN-TTG------------LPTIDYRITDSLAD 641 (944)
Q Consensus 579 ~~~a~~i~~d~idilvdl~g~t~~~~~~~~a~r----~ApvQ~~~~G~p~-t~g------------~~~~Dy~i~d~~~~ 641 (944)
..+.+.|+..++||++--.++.. .-...++.+ -.|+-++.-|... ..+ +...|.+|+-.-..
T Consensus 89 ~~l~~~l~~~~~Dvv~~~~~~~~-~~~~~~~~~~~~~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~ 167 (394)
T 2jjm_A 89 SKMAEVAQRENLDILHVHYAIPH-AICAYLAKQMIGERIKIVTTLHGTDITVLGSDPSLNNLIRFGIEQSDVVTAVSHSL 167 (394)
T ss_dssp HHHHHHHHHHTCSEEEECSSTTH-HHHHHHHHHHTTTCSEEEEECCHHHHHTTTTCTTTHHHHHHHHHHSSEEEESCHHH
T ss_pred HHHHHHHHHcCCCEEEEcchhHH-HHHHHHHHHhhcCCCCEEEEEecCcccccCCCHHHHHHHHHHHhhCCEEEECCHHH
Confidence 45778888999999975333221 112223322 3777666655211 011 12356666421100
Q ss_pred Cccccccc--ccceEEcCCCccccCCCCCCCCC----CCCCCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCce
Q 002273 642 PPETKQKH--VEELIRLPECFLCYTPSPEAGPV----CPTPALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSR 713 (944)
Q Consensus 642 p~~~~~~~--~e~~~~lp~~~~~~~~~~~~~~~----~~~~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~ 713 (944)
-......+ .+++..+|+.. ++....+.. +...+++++.++++++++. .|..+.++++|.++... ++.+
T Consensus 168 ~~~~~~~~~~~~~~~vi~ngv---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~-~~~~ 243 (394)
T 2jjm_A 168 INETHELVKPNKDIQTVYNFI---DERVYFKRDMTQLKKEYGISESEKILIHISNFRKVKRVQDVVQAFAKIVTE-VDAK 243 (394)
T ss_dssp HHHHHHHTCCSSCEEECCCCC---CTTTCCCCCCHHHHHHTTCC---CEEEEECCCCGGGTHHHHHHHHHHHHHS-SCCE
T ss_pred HHHHHHhhCCcccEEEecCCc---cHHhcCCcchHHHHHHcCCCCCCeEEEEeeccccccCHHHHHHHHHHHHhh-CCCE
Confidence 00011112 36778888642 111111110 1123344566677777765 79999999999998877 6789
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEecC
Q 002273 714 LVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMA 792 (944)
Q Consensus 714 l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~ 792 (944)
|+++|.+ .....+++.++++|+ .++|.|.|. ..+....|..+|+++-|+.+ +.|++.+|||++|+|||+
T Consensus 244 l~i~G~g----~~~~~l~~~~~~~~l-~~~v~~~g~---~~~~~~~~~~adv~v~ps~~e~~~~~~~EAma~G~PvI~-- 313 (394)
T 2jjm_A 244 LLLVGDG----PEFCTILQLVKNLHI-EDRVLFLGK---QDNVAELLAMSDLMLLLSEKESFGLVLLEAMACGVPCIG-- 313 (394)
T ss_dssp EEEECCC----TTHHHHHHHHHTTTC-GGGBCCCBS---CSCTHHHHHTCSEEEECCSCCSCCHHHHHHHHTTCCEEE--
T ss_pred EEEECCc----hHHHHHHHHHHHcCC-CCeEEEeCc---hhhHHHHHHhCCEEEeccccCCCchHHHHHHhcCCCEEE--
Confidence 9999865 346778888899999 589999996 35677888999999988866 779999999999999999
Q ss_pred CCcccccchhHHHhhcCCcc--------ccc--CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 002273 793 GSVHAHNVGVSLLTKVGLKH--------LIA--KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLE 862 (944)
Q Consensus 793 g~~~~~r~~~~~l~~~gl~~--------~v~--~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e 862 (944)
++++ |++| ++. .|.+++++...++.+|++.+.++++..++...+. |+++.+++.++
T Consensus 314 -----~~~~-------~~~e~v~~~~~g~~~~~~d~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~--~s~~~~~~~~~ 379 (394)
T 2jjm_A 314 -----TRVG-------GIPEVIQHGDTGYLCEVGDTTGVADQAIQLLKDEELHRNMGERARESVYEQ--FRSEKIVSQYE 379 (394)
T ss_dssp -----ECCT-------TSTTTCCBTTTEEEECTTCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH--SCHHHHHHHHH
T ss_pred -----ecCC-------ChHHHhhcCCceEEeCCCCHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHH
Confidence 5554 3333 333 3999999999999999999999999998876434 89999999999
Q ss_pred HHHHHHHHHHhcC
Q 002273 863 STYRNMWHRYCKG 875 (944)
Q Consensus 863 ~~~~~~~~~~~~~ 875 (944)
++|+++..+...|
T Consensus 380 ~~~~~~~~~~~~~ 392 (394)
T 2jjm_A 380 TIYYDVLRDDKNG 392 (394)
T ss_dssp HHHHHTC------
T ss_pred HHHHHHHhhhhcc
Confidence 9999987765544
No 133
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=99.49 E-value=2.4e-13 Score=157.91 Aligned_cols=184 Identities=10% Similarity=0.065 Sum_probs=145.3
Q ss_pred CCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCc-eEEEecCCCCC--------HHH---HHHHHHHHHHcCCCCCc
Q 002273 678 LTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNS-RLVVKCKPFCC--------DSV---RHRFLSTLEQLGLESLR 743 (944)
Q Consensus 678 ~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~-~l~~~~~~~~~--------~~~---~~~~~~~~~~~gi~~~r 743 (944)
++++.++++++++. .|..+.++++|..+.+..|+. +|+++|...+. ... .+.+++.++++|+ .++
T Consensus 258 ~~~~~~~i~~vGrl~~~Kg~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~y~~l~~~~~~y~~~l~~~~~~~~l-~~~ 336 (499)
T 2r60_A 258 ERMELPAIIASSRLDQKKNHYGLVEAYVQNKELQDKANLVLTLRGIENPFEDYSRAGQEEKEILGKIIELIDNNDC-RGK 336 (499)
T ss_dssp GGTTSCEEEECSCCCGGGCHHHHHHHHHTCHHHHHHCEEEEEESSCSBTTTBCTTSCHHHHHHHHHHHHHHHHTTC-BTT
T ss_pred cCCCCcEEEEeecCccccCHHHHHHHHHHHHHhCCCceEEEEECCCCCcccccccccccchHHHHHHHHHHHhcCC-Cce
Confidence 44566678888865 899999999999998887776 67777652111 112 7889999999999 589
Q ss_pred EEEccCccCcHHHHHhcccc----cEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchh-HHHhhcCCccccc--
Q 002273 744 VDLLPLILLNHDHMQAYSLM----DISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGV-SLLTKVGLKHLIA-- 815 (944)
Q Consensus 744 v~~~~~~~~~~~~~~~~~~~----Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~-~~l~~~gl~~~v~-- 815 (944)
|.|+|.++ ..+....|+.+ ||++-|..+ +.|.+.+|||++|+|||+ +++|+ .-+-.-|-..++.
T Consensus 337 V~~~G~v~-~~~~~~~~~~a~~~~dv~v~pS~~Eg~~~~~lEAma~G~PvI~-------s~~~g~~e~v~~~~~g~l~~~ 408 (499)
T 2r60_A 337 VSMFPLNS-QQELAGCYAYLASKGSVFALTSFYEPFGLAPVEAMASGLPAVV-------TRNGGPAEILDGGKYGVLVDP 408 (499)
T ss_dssp EEEEECCS-HHHHHHHHHHHHHTTCEEEECCSCBCCCSHHHHHHHTTCCEEE-------ESSBHHHHHTGGGTSSEEECT
T ss_pred EEECCCCC-HHHHHHHHHhcCcCCCEEEECcccCCCCcHHHHHHHcCCCEEE-------ecCCCHHHHhcCCceEEEeCC
Confidence 99999986 68899999999 999888866 779999999999999999 55541 1111113233443
Q ss_pred CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHH
Q 002273 816 KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRY 872 (944)
Q Consensus 816 ~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 872 (944)
.|.+++.+...++..|++.+.++++..++..... |+++.+++.++++|+++..+.
T Consensus 409 ~d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~~~--fs~~~~~~~~~~~y~~~~~~~ 463 (499)
T 2r60_A 409 EDPEDIARGLLKAFESEETWSAYQEKGKQRVEER--YTWQETARGYLEVIQEIADRK 463 (499)
T ss_dssp TCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH--SBHHHHHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHHhhh
Confidence 5999999999999999999999999998887543 899999999999999987643
No 134
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.48 E-value=7.3e-13 Score=122.08 Aligned_cols=113 Identities=15% Similarity=0.095 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 002273 323 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYT 402 (944)
Q Consensus 323 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 402 (944)
+..+..+|..+...|++++|+..|+++++.+|+++.++.++|.++...|++++|+..|+++++++|+++.+++.+|.++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHH
Q 002273 403 VQGKMDAAAEMIEKAIAAN------PTYAEAYNNLGVLY 435 (944)
Q Consensus 403 ~~g~~~~A~~~l~~al~~~------p~~~~a~~~la~~~ 435 (944)
.+|++++|+..|+++++++ |++..++..++.+.
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 5555555555555555555 55555555544443
No 135
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.47 E-value=2.5e-10 Score=131.21 Aligned_cols=376 Identities=10% Similarity=-0.017 Sum_probs=259.0
Q ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHhc---CCCCHHHHHH
Q 002273 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNM-GRLAFDSFSEAVKL---DPQNACAHTH 121 (944)
Q Consensus 46 ~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~---~p~~~~~~~~ 121 (944)
..+...+..+...+-.|+++.+..+|++++...| +.+.|..........++ .+.....|+.++.. ++.+...|..
T Consensus 12 ~~aR~vyer~l~~~P~~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~ 90 (493)
T 2uy1_A 12 SSPSAIMEHARRLYMSKDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKE 90 (493)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHH
Confidence 3678888999999988999999999999999888 88888888888777763 35567788888874 7788888888
Q ss_pred HHHHHH----HcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHH--------HHHHHHcCChHHHHHHHHHHHhhCCC
Q 002273 122 CGILYK----DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDL--------GTSLKLAGNTQDGIQKYYEALKIDPH 189 (944)
Q Consensus 122 la~~~~----~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~l--------g~~~~~~g~~~~A~~~~~~al~~~p~ 189 (944)
....+. .+++.+.+...|++++.. |.............+.. .........+..|...|+++....+.
T Consensus 91 Yi~f~~~~~~~~~~~~~vR~iy~rAL~~-P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~ 169 (493)
T 2uy1_A 91 YIEEEGKIEDEQTRIEKIRNGYMRALQT-PMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRG 169 (493)
T ss_dssp HHHHTSSCSSHHHHHHHHHHHHHHHHTS-CCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhchhhhHHHHHHHHHHHHHHhC-hhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence 877654 356788999999999995 43322111100001000 00111223455566666665554322
Q ss_pred -CHHHHHHHHHHHHHc--CC-----HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHH
Q 002273 190 -YAPAYYNLGVVYSEL--MQ-----YDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIA 261 (944)
Q Consensus 190 -~~~~~~~la~~~~~~--g~-----~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 261 (944)
....|......-... +- .+.....|++++...|..+..|...+..+...|+.++|...|++++.. |.+...
T Consensus 170 ~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l 248 (493)
T 2uy1_A 170 WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFL 248 (493)
T ss_dssp CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHH
T ss_pred ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHH
Confidence 334554444332221 10 355778999999999999999999999999999999999999999999 988765
Q ss_pred HHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q 002273 262 KNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDM 341 (944)
Q Consensus 262 ~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 341 (944)
+...+... ..... ... +...+.. ...+.+ .....+....+|...+....+.++.+.
T Consensus 249 ~~~y~~~~-e~~~~-~~~---------------l~~~~~~-~~~~~~------~~~~~~~~~~lw~~y~~~~~r~~~~~~ 304 (493)
T 2uy1_A 249 SLYYGLVM-DEEAV-YGD---------------LKRKYSM-GEAESA------EKVFSKELDLLRINHLNYVLKKRGLEL 304 (493)
T ss_dssp HHHHHHHT-TCTHH-HHH---------------HHHHTC-----------------CHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHhhc-chhHH-HHH---------------HHHHHHh-hccchh------hhhcccccHHHHHHHHHHHHHcCCHHH
Confidence 55433321 00000 000 0000000 000000 000001123567888888888888999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002273 342 AIVFYELAFHFNPHCAEACNNLGVIYKDRD-NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 420 (944)
Q Consensus 342 A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 420 (944)
|...|+++ ...+.....|...|.+....+ +.+.|...|+++++..|+.+..+..++......|+.+.|...|+++
T Consensus 305 AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~--- 380 (493)
T 2uy1_A 305 FRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL--- 380 (493)
T ss_dssp HHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS---
T ss_pred HHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH---
Confidence 99999999 443345677777777666655 6999999999999999999988888888888999999999999998
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002273 421 NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 453 (944)
Q Consensus 421 ~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~ 453 (944)
+.....|......-...|+.+.+.+.++++++
T Consensus 381 -~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 381 -EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp -CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34677888888888888999999999999886
No 136
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.47 E-value=3.5e-13 Score=132.56 Aligned_cols=128 Identities=17% Similarity=0.212 Sum_probs=106.9
Q ss_pred HHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHHcCCH--HHH
Q 002273 334 GEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV-YTVQGKM--DAA 410 (944)
Q Consensus 334 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~--~~A 410 (944)
...|++++|+..++++++.+|+++.++..+|.++...|++++|+.+|+++++++|+++.++..+|.+ +...|++ ++|
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 3457778888888888888888888888888888888888888888888888888888888888888 7788888 899
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhh
Q 002273 411 AEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 461 (944)
Q Consensus 411 ~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a 461 (944)
+..++++++.+|++..+++.+|.++...|++++|+..|+++++++|++...
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 151 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINR 151 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccH
Confidence 999999999999888999999999999999999999999999999987543
No 137
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.47 E-value=1.8e-12 Score=125.36 Aligned_cols=133 Identities=18% Similarity=0.179 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 002273 323 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYT 402 (944)
Q Consensus 323 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 402 (944)
+..+..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+.+++++++.+|+++.+++.+|.++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 56788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHHhhC
Q 002273 403 VQGKMDAAAEMIEKAIAANPTYAEAYNNLGV--LYRDAGSISLAIDAYEQCLKID 455 (944)
Q Consensus 403 ~~g~~~~A~~~l~~al~~~p~~~~a~~~la~--~~~~~g~~~eA~~~~~~al~l~ 455 (944)
..|++++|+.+|+++++.+|++..++..++. .+...|++++|++.++++..+.
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 147 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVV 147 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHh
Confidence 9999999999999999999999888855444 4888899999999998876653
No 138
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.46 E-value=8e-13 Score=121.82 Aligned_cols=111 Identities=18% Similarity=0.195 Sum_probs=104.3
Q ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 002273 355 HCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL 434 (944)
Q Consensus 355 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~ 434 (944)
..+..+..+|..+...|++++|+..|+++++++|+++.++.++|.++..+|++++|+..++++++++|++..+++.+|.+
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhhC------CCChhhhhhH
Q 002273 435 YRDAGSISLAIDAYEQCLKID------PDSRNAGQNR 465 (944)
Q Consensus 435 ~~~~g~~~eA~~~~~~al~l~------P~~~~a~~~~ 465 (944)
+..+|++++|+..|+++++++ |++..+...+
T Consensus 82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l 118 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLY 118 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHH
Confidence 999999999999999999999 7766655543
No 139
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.46 E-value=3.7e-12 Score=117.87 Aligned_cols=61 Identities=33% Similarity=0.376 Sum_probs=24.0
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 002273 86 IGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSAD 146 (944)
Q Consensus 86 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 146 (944)
+.+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+..++++++..
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 65 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 65 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 3333333444444444444444443333333333333333333333333333333333333
No 140
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.45 E-value=1e-12 Score=127.57 Aligned_cols=115 Identities=27% Similarity=0.373 Sum_probs=105.8
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002273 354 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 433 (944)
Q Consensus 354 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~ 433 (944)
+.++..++.+|.++...|++++|+.+|+++++++|+++.+++++|.+|...|++++|+..|+++++++|++..+++++|.
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 44577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChhhhhhHHHH
Q 002273 434 LYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 468 (944)
Q Consensus 434 ~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~~~~ 468 (944)
+|..+|++++|+.+|+++++++|++..++.++.+.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 99999999999999999999999999877665443
No 141
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.45 E-value=3.7e-13 Score=157.16 Aligned_cols=198 Identities=10% Similarity=0.049 Sum_probs=168.9
Q ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCC
Q 002273 241 LESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNW 320 (944)
Q Consensus 241 ~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p 320 (944)
.++|++.+.+++..+|++..+|...+.++..++....... ....++++++.++++++.+|
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~--------------------~~~~~~~eL~~~~~~l~~~p 104 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEE--------------------SAALVKAELGFLESCLRVNP 104 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHH--------------------HHHHHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhh--------------------hhhhHHHHHHHHHHHHHhCC
Confidence 4566777777777777777777777777766554100000 01125899999999999999
Q ss_pred CCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhhCCCCHHHHHHH
Q 002273 321 HYADAMYNLGVAYGEML--KFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD-NLDKAVECYQMALSIKPNFSQSLNNL 397 (944)
Q Consensus 321 ~~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l 397 (944)
++..+|...+.++...+ +++++++.++++++.+|.+..+|...+.++...| .+++++++++++++.+|.+..+|..+
T Consensus 105 K~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r 184 (567)
T 1dce_A 105 KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYR 184 (567)
T ss_dssp TCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHH
Confidence 99999999999999999 6699999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHc--------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH------------HHHHHHHH
Q 002273 398 GVVYTVQ--------------GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISL------------AIDAYEQC 451 (944)
Q Consensus 398 a~~~~~~--------------g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~e------------A~~~~~~a 451 (944)
+.++... +.+++|++++.+++..+|++..+|+.++.++...+++++ |+.+|.++
T Consensus 185 ~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 264 (567)
T 1dce_A 185 SCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRP 264 (567)
T ss_dssp HHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEEEE
T ss_pred HHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEeccc
Confidence 9999885 568999999999999999999999999999999998776 56667888
Q ss_pred HhhCCCC
Q 002273 452 LKIDPDS 458 (944)
Q Consensus 452 l~l~P~~ 458 (944)
+.++|..
T Consensus 265 i~~~~~~ 271 (567)
T 1dce_A 265 LTVGSRM 271 (567)
T ss_dssp ECTTBTT
T ss_pred eeccccc
Confidence 8888764
No 142
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=99.44 E-value=1.2e-12 Score=149.20 Aligned_cols=175 Identities=14% Similarity=0.123 Sum_probs=141.7
Q ss_pred CCCCCCeEEEecCCC---CcCCHHHHHHHHHHHhHc--CCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCcc
Q 002273 677 ALTNGFITFGSFNNL---AKITPKVLQVWARILCAV--PNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLIL 751 (944)
Q Consensus 677 ~~~~~~~~f~~~~~~---~K~~~~~~~~~~~il~~~--p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~ 751 (944)
+++++ ++++++++. .|..+.+++++.++.... |+.+|+++|.+ .+.....+++..+++| +++.|.|.++
T Consensus 247 ~~~~~-~~i~~~G~~~~~~Kg~~~li~a~~~l~~~~~~~~~~l~i~G~g--~~~~~~~l~~~~~~~~---~~~~~~g~~~ 320 (439)
T 3fro_A 247 GMDEG-VTFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKG--DPELEGWARSLEEKHG---NVKVITEMLS 320 (439)
T ss_dssp TCCSC-EEEEEECCSSCTTBCHHHHHHHHHHHHTSGGGGGEEEEEECCC--CHHHHHHHHHHHHHCT---TEEEECSCCC
T ss_pred CCCCC-cEEEEEcccccccccHHHHHHHHHHHHhcccCCCeEEEEEcCC--ChhHHHHHHHHHhhcC---CEEEEcCCCC
Confidence 34566 777777764 589999999999999887 99999999865 2344578888888888 7788888776
Q ss_pred CcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchh--HHHhhcCCccccc--CCHHHHHHHHH
Q 002273 752 LNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGV--SLLTKVGLKHLIA--KNEDEYVQLAL 826 (944)
Q Consensus 752 ~~~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~--~~l~~~gl~~~v~--~~~~~y~~~a~ 826 (944)
.++....|..+||++-|..+ +.|++.+|||++|+|||+ +++|+ .++. -| ..++. .|++++++...
T Consensus 321 -~~~~~~~~~~adv~v~ps~~e~~~~~~~EAma~G~Pvi~-------s~~~~~~e~~~-~~-~g~~~~~~d~~~la~~i~ 390 (439)
T 3fro_A 321 -REFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIA-------SAVGGLRDIIT-NE-TGILVKAGDPGELANAIL 390 (439)
T ss_dssp -HHHHHHHHTTCSEEEECBSCCSSCHHHHHHHHTTCEEEE-------ESSTHHHHHCC-TT-TCEEECTTCHHHHHHHHH
T ss_pred -HHHHHHHHHHCCEEEeCCCCCCccHHHHHHHHCCCCeEE-------cCCCCcceeEE-cC-ceEEeCCCCHHHHHHHHH
Confidence 68889999999999988876 779999999999999999 55541 1111 14 44443 49999999999
Q ss_pred HHhc-CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 002273 827 QLAS-DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 870 (944)
Q Consensus 827 ~l~~-d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 870 (944)
++.. |++.++++++..++.. +. |+++.+++.++++|+++.+
T Consensus 391 ~ll~~~~~~~~~~~~~~~~~~-~~--~s~~~~~~~~~~~~~~~~~ 432 (439)
T 3fro_A 391 KALELSRSDLSKFRENCKKRA-MS--FSWEKSAERYVKAYTGSID 432 (439)
T ss_dssp HHHHHTTTTTHHHHHHHHHHH-HT--SCHHHHHHHHHHHHHTCSC
T ss_pred HHHhcCHHHHHHHHHHHHHHH-hh--CcHHHHHHHHHHHHHHHHH
Confidence 9999 9999999999999887 34 9999999999999987643
No 143
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.44 E-value=3.4e-12 Score=136.96 Aligned_cols=176 Identities=11% Similarity=0.005 Sum_probs=148.6
Q ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhH
Q 002273 79 SGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA------CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPA 152 (944)
Q Consensus 79 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 152 (944)
|.....+...+..+...|++++|++.++++++..+... ..++.+|.++...|++++|+..++++++..+.....
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 151 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence 44556677888999999999999999999999877654 346678899999999999999999999887654332
Q ss_pred HhHHHHHHHHHHHHHHHcCChHHHHHHHHHHH---hhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--
Q 002273 153 AECLAIVLTDLGTSLKLAGNTQDGIQKYYEAL---KIDPHYA----PAYYNLGVVYSELMQYDTALGCYEKAALERPM-- 223 (944)
Q Consensus 153 ~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al---~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-- 223 (944)
...+.++..+|.++...|++++|+.+|++++ +..+++. .+++++|.+|..+|++++|+.+++++++..+.
T Consensus 152 -~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~ 230 (293)
T 2qfc_A 152 -YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN 230 (293)
T ss_dssp -THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcC
Confidence 2246689999999999999999999999999 4455542 68999999999999999999999999987532
Q ss_pred ----CHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhC
Q 002273 224 ----YAEAYCNMGVIYKNRGDLESA-IACYERCLAVS 255 (944)
Q Consensus 224 ----~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~ 255 (944)
...+++.+|.+|..+|++++| ..+|++++.+.
T Consensus 231 ~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 231 SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp BCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 267899999999999999999 88899988653
No 144
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.44 E-value=9.4e-12 Score=130.82 Aligned_cols=184 Identities=10% Similarity=-0.013 Sum_probs=113.2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHhhhhhhhhHHHHHhhc
Q 002273 210 ALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSP--NFEIAKNNMAIALTDLGTKTYGRALLLFRLN 287 (944)
Q Consensus 210 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~ 287 (944)
|+..+++.++..+.....+..+|.++...|++++|++.+.+.+..+| ++..+...++.++..++
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~-------------- 150 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNN-------------- 150 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTT--------------
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCC--------------
Confidence 56666666655444455556666777777777777777777666665 55555555555544433
Q ss_pred CCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCC----CHHHHHHH--HHHHHHcC--ChHHHHHHHHHHHhhCCC--CH
Q 002273 288 GSNFQSPFFELVKLEGDINQGVAYYKKALYYNWH----YADAMYNL--GVAYGEML--KFDMAIVFYELAFHFNPH--CA 357 (944)
Q Consensus 288 ~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~----~~~~~~~l--a~~~~~~g--~~~~A~~~~~~al~~~p~--~~ 357 (944)
+.+.|.+.++++.+.+|+ +-.+...+ +.+....| ++++|...|+++.+..|+ ..
T Consensus 151 ----------------r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~ 214 (310)
T 3mv2_B 151 ----------------NVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQ 214 (310)
T ss_dssp ----------------CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHH
T ss_pred ----------------CHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccH
Confidence 336666666666666652 12222333 33344444 777777777777666665 22
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhh----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 002273 358 EACNNLGVIYKDRDNLDKAVECYQMALSI----------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEA 427 (944)
Q Consensus 358 ~~~~~la~~~~~~g~~~~A~~~~~~al~~----------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a 427 (944)
..+++ ++..+|++++|.+.++++++. +|+++.++.+++.+...+|+ +|.++++++.+.+|+++.+
T Consensus 215 ~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 215 LGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred HHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 33333 677777777777777766655 36677777777777777776 6777777777777776654
Q ss_pred H
Q 002273 428 Y 428 (944)
Q Consensus 428 ~ 428 (944)
.
T Consensus 290 ~ 290 (310)
T 3mv2_B 290 K 290 (310)
T ss_dssp H
T ss_pred H
Confidence 3
No 145
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=99.44 E-value=8.9e-12 Score=136.94 Aligned_cols=301 Identities=11% Similarity=0.062 Sum_probs=183.0
Q ss_pred CcEEEeecCC--------C---cc---CcHHHHHHhhhhhccCCcEEEEEEeccccCChhhHHHHHHHhhhCCceEeccC
Q 002273 510 PLVIGYVSPD--------Y---FT---HSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYG 575 (944)
Q Consensus 510 ~lriGy~S~d--------~---~~---h~v~~~~~~~l~~~d~~~fev~~y~~~~~~d~~t~~~~~~~~~~~~~~~~~~~ 575 (944)
+.||.+++.. | .. --+..++..+...+....++|++++........ +...-+..
T Consensus 3 ~mkIl~v~~~~~~~~~~~~~p~~p~~~gG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~~------------~~~~~~~~ 70 (342)
T 2iuy_A 3 PLKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLELGHEVFLLGAPGSPAGR------------PGLTVVPA 70 (342)
T ss_dssp CCEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHHTTCEEEEESCTTSCCCS------------TTEEECSC
T ss_pred ccEEEEEeccccccCcccccccCcccCChHHHHHHHHHHHHHHcCCeEEEEecCCCCCCC------------CcceeccC
Confidence 3688999887 2 11 223445555666666667899998765432211 01111112
Q ss_pred CCHHHHHHHhHhCCccEEEecCCCCCCCchhhhccCCcceeeecccCCCCCCCCCccEEEecCCCCCccc-cccc--ccc
Q 002273 576 IDEKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITDSLADPPET-KQKH--VEE 652 (944)
Q Consensus 576 ~~~~~~a~~i~~d~idilvdl~g~t~~~~~~~~a~r~ApvQ~~~~G~p~t~g~~~~Dy~i~d~~~~p~~~-~~~~--~e~ 652 (944)
.....+.+.|+..++||++--..+... ......-.| -++.-|..... ...|.+|+ +... ...+ .++
T Consensus 71 ~~~~~l~~~l~~~~~Dvi~~~~~~~~~---~~~~~~~~p-v~~~h~~~~~~--~~~d~ii~-----~S~~~~~~~~~~~~ 139 (342)
T 2iuy_A 71 GEPEEIERWLRTADVDVVHDHSGGVIG---PAGLPPGTA-FISSHHFTTRP--VNPVGCTY-----SSRAQRAHCGGGDD 139 (342)
T ss_dssp CSHHHHHHHHHHCCCSEEEECSSSSSC---STTCCTTCE-EEEEECSSSBC--SCCTTEEE-----SCHHHHHHTTCCTT
T ss_pred CcHHHHHHHHHhcCCCEEEECCchhhH---HHHhhcCCC-EEEecCCCCCc--ccceEEEE-----cCHHHHHHHhcCCc
Confidence 233578899999999999765444321 112223345 33333433221 11444443 2221 1222 356
Q ss_pred eEEcCCCccccCCCCCCCCCCCCCCCCCCCeEEEecCC--CCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHH
Q 002273 653 LIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNN--LAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRF 730 (944)
Q Consensus 653 ~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~ 730 (944)
+..+|+.. . +....+... ..++. .+++.+++ ..|..+.+++++.++ +.+|+++|.+ ..+..+
T Consensus 140 ~~vi~ngv-d--~~~~~~~~~---~~~~~-~~i~~vG~~~~~Kg~~~li~a~~~~-----~~~l~i~G~g----~~~~~l 203 (342)
T 2iuy_A 140 APVIPIPV-D--PARYRSAAD---QVAKE-DFLLFMGRVSPHKGALEAAAFAHAC-----GRRLVLAGPA----WEPEYF 203 (342)
T ss_dssp SCBCCCCB-C--GGGSCCSTT---CCCCC-SCEEEESCCCGGGTHHHHHHHHHHH-----TCCEEEESCC----CCHHHH
T ss_pred eEEEcCCC-C--hhhcCcccc---cCCCC-CEEEEEeccccccCHHHHHHHHHhc-----CcEEEEEeCc----ccHHHH
Confidence 66676532 1 110001000 11122 23444554 589999999998876 7899999876 244556
Q ss_pred HHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCC-----------CCCcccHHHhhhcCCcEEecCCCccccc
Q 002273 731 LSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFP-----------YAGTTTTCESLYMGVPCVTMAGSVHAHN 799 (944)
Q Consensus 731 ~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~-----------~~~~~t~~eal~~gvPvvt~~g~~~~~r 799 (944)
++..+.+| ++|.|.|.++ ..+....|..+|+++-|.. .+.|++.+|||++|+|||+ ++
T Consensus 204 ~~~~~~~~---~~v~~~g~~~-~~~l~~~~~~adv~v~ps~~~~~~~~~~~~E~~~~~~~EAma~G~PvI~-------s~ 272 (342)
T 2iuy_A 204 DEITRRYG---STVEPIGEVG-GERRLDLLASAHAVLAMSQAVTGPWGGIWCEPGATVVSEAAVSGTPVVG-------TG 272 (342)
T ss_dssp HHHHHHHT---TTEEECCCCC-HHHHHHHHHHCSEEEECCCCCCCTTCSCCCCCCCHHHHHHHHTTCCEEE-------CC
T ss_pred HHHHHHhC---CCEEEeccCC-HHHHHHHHHhCCEEEECCcccccccccccccCccHHHHHHHhcCCCEEE-------cC
Confidence 66666666 7999999987 5788899999999998876 3779999999999999999 55
Q ss_pred chh-H-HHhhc-CCcccccC-CHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 002273 800 VGV-S-LLTKV-GLKHLIAK-NEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 870 (944)
Q Consensus 800 ~~~-~-~l~~~-gl~~~v~~-~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 870 (944)
+++ . ++... |-..+++. |.+++.+...++.+ ..+.|+.++++ |+++.+++.++++|+++..
T Consensus 273 ~~~~~e~~~~~~~~~g~~~~~d~~~l~~~i~~l~~----~~~~~~~~~~~------~s~~~~~~~~~~~~~~~~~ 337 (342)
T 2iuy_A 273 NGCLAEIVPSVGEVVGYGTDFAPDEARRTLAGLPA----SDEVRRAAVRL------WGHVTIAERYVEQYRRLLA 337 (342)
T ss_dssp TTTHHHHGGGGEEECCSSSCCCHHHHHHHHHTSCC----HHHHHHHHHHH------HBHHHHHHHHHHHHHHHHT
T ss_pred CCChHHHhcccCCCceEEcCCCHHHHHHHHHHHHH----HHHHHHHHHHh------cCHHHHHHHHHHHHHHHHc
Confidence 541 1 11110 34455555 99999999888887 23333333332 7999999999999998865
No 146
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.43 E-value=1.9e-12 Score=119.99 Aligned_cols=122 Identities=16% Similarity=0.157 Sum_probs=108.5
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q 002273 319 NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLG 398 (944)
Q Consensus 319 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 398 (944)
.|.....+..+|.++...|++++|+..|+++++.+|.+..++..+|.++...|++++|+.+++++++.+|++..++..+|
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la 91 (133)
T 2lni_A 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA 91 (133)
T ss_dssp SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 34567788899999999999999999999999999989999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 002273 399 VVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS 440 (944)
Q Consensus 399 ~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~ 440 (944)
.++...|++++|+.+++++++.+|++..++..++.++...|+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 999999999999999999999999888889999988887764
No 147
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.43 E-value=2.4e-12 Score=138.08 Aligned_cols=172 Identities=13% Similarity=0.123 Sum_probs=127.0
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC------
Q 002273 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVE------AHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN------ 115 (944)
Q Consensus 48 ~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------ 115 (944)
...+...+..++..|+|++|+..++++++..+.+.. .+..+|.++...+++++|+..|+++++..+..
T Consensus 75 ~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~ 154 (293)
T 3u3w_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHH
Confidence 344556788999999999999999999998776654 33458888888899999999999999865432
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC-----
Q 002273 116 ACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY----- 190 (944)
Q Consensus 116 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~----- 190 (944)
..++..+|.+|..+|++++|+.+|+++++............+.++.++|.++..+|++++|+.+++++++..+..
T Consensus 155 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~ 234 (293)
T 3u3w_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 347899999999999999999999999964322211223345567777777777777777777777777653322
Q ss_pred -HHHHHHHHHHHHHcC-CHHHHHHHHHHHHH
Q 002273 191 -APAYYNLGVVYSELM-QYDTALGCYEKAAL 219 (944)
Q Consensus 191 -~~~~~~la~~~~~~g-~~~~A~~~~~~al~ 219 (944)
+.+++.+|.+|..+| .+++|+++|++++.
T Consensus 235 ~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 556666666666666 35666666666654
No 148
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.43 E-value=8.4e-13 Score=129.85 Aligned_cols=130 Identities=15% Similarity=0.132 Sum_probs=120.1
Q ss_pred hhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHHCCCH--HH
Q 002273 299 VKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVI-YKDRDNL--DK 375 (944)
Q Consensus 299 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g~~--~~ 375 (944)
+...|++++|+..++++++.+|.++.++..+|.++...|++++|+.+|+++++.+|+++.++..+|.+ +...|++ ++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999 8899999 99
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 002273 376 AVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 428 (944)
Q Consensus 376 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~ 428 (944)
|+.+|+++++.+|++..+++.+|.++...|++++|+..|+++++.+|++....
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 99999999999999999999999999999999999999999999999875544
No 149
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.43 E-value=2.7e-12 Score=137.69 Aligned_cols=171 Identities=12% Similarity=0.108 Sum_probs=145.0
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC-----
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNV------EAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN----- 115 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~----- 115 (944)
....+...+..++..|+|++|+..++++++..+... ..++.+|.++...|++++|+..++++++..+..
T Consensus 74 ~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 153 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence 345567889999999999999999999999887654 346778889999999999999999999875443
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHH---HcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--
Q 002273 116 -ACAHTHCGILYKDEGRLVEAAESYHKAL---SADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH-- 189 (944)
Q Consensus 116 -~~~~~~la~~~~~~g~~~~A~~~~~~al---~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-- 189 (944)
..++..+|.+|..+|++++|+.+|++++ +..+++... .+.++.++|.++..+|++++|+.+++++++..++
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~---~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~ 230 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEF---DVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN 230 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccc---hHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcC
Confidence 5689999999999999999999999999 445544322 2367899999999999999999999999987532
Q ss_pred ----CHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHh
Q 002273 190 ----YAPAYYNLGVVYSELMQYDTA-LGCYEKAALE 220 (944)
Q Consensus 190 ----~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~ 220 (944)
...+++++|.+|..+|++++| ..++++++.+
T Consensus 231 ~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 231 SMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp BCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 277899999999999999999 8889998864
No 150
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=99.42 E-value=1.3e-12 Score=149.18 Aligned_cols=182 Identities=15% Similarity=0.132 Sum_probs=144.5
Q ss_pred CCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcC--CceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccC
Q 002273 677 ALTNGFITFGSFNNL--AKITPKVLQVWARILCAVP--NSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILL 752 (944)
Q Consensus 677 ~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p--~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~ 752 (944)
+++++.++++++.+. .|..+.++++|.++....| +.+|+++|.+.......+.+++.++++|+ .++|.|+|.++
T Consensus 238 ~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l~~~~p~~~~~l~i~G~~~~~g~~~~~l~~~~~~~~l-~~~v~~~g~~~- 315 (438)
T 3c48_A 238 GIPLHTKVVAFVGRLQPFKGPQVLIKAVAALFDRDPDRNLRVIICGGPSGPNATPDTYRHMAEELGV-EKRIRFLDPRP- 315 (438)
T ss_dssp TCCSSSEEEEEESCBSGGGCHHHHHHHHHHHHHHCTTCSEEEEEECCBC------CHHHHHHHHTTC-TTTEEEECCCC-
T ss_pred CCCCCCcEEEEEeeecccCCHHHHHHHHHHHHhhCCCcceEEEEEeCCCCCCcHHHHHHHHHHHcCC-CCcEEEcCCCC-
Confidence 445666778888865 7999999999999999988 78999998622112456788888999999 58999999987
Q ss_pred cHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchh--HHHhhcCCccccc--CCHHHHHHHHHH
Q 002273 753 NHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGV--SLLTKVGLKHLIA--KNEDEYVQLALQ 827 (944)
Q Consensus 753 ~~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~--~~l~~~gl~~~v~--~~~~~y~~~a~~ 827 (944)
..+....|+.+||++-|..+ +.|++.+|||++|+|||+ +++++ .++. -|-..+++ .|.+++.+...+
T Consensus 316 ~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~-------~~~~~~~e~i~-~~~~g~~~~~~d~~~la~~i~~ 387 (438)
T 3c48_A 316 PSELVAVYRAADIVAVPSFNESFGLVAMEAQASGTPVIA-------ARVGGLPIAVA-EGETGLLVDGHSPHAWADALAT 387 (438)
T ss_dssp HHHHHHHHHHCSEEEECCSCCSSCHHHHHHHHTTCCEEE-------ESCTTHHHHSC-BTTTEEEESSCCHHHHHHHHHH
T ss_pred hHHHHHHHHhCCEEEECccccCCchHHHHHHHcCCCEEe-------cCCCChhHHhh-CCCcEEECCCCCHHHHHHHHHH
Confidence 67899999999999988866 679999999999999999 44431 1111 13333443 489999999999
Q ss_pred HhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHH
Q 002273 828 LASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHR 871 (944)
Q Consensus 828 l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 871 (944)
+.+|++.+.++++..++.... |+++.+++.++++|+++..+
T Consensus 388 l~~~~~~~~~~~~~~~~~~~~---~s~~~~~~~~~~~~~~~~~~ 428 (438)
T 3c48_A 388 LLDDDETRIRMGEDAVEHART---FSWAATAAQLSSLYNDAIAN 428 (438)
T ss_dssp HHHCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHT
T ss_pred HHcCHHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHhhh
Confidence 999999999999999888753 89999999999999998874
No 151
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.42 E-value=3.8e-12 Score=148.53 Aligned_cols=164 Identities=10% Similarity=0.041 Sum_probs=155.7
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC--
Q 002273 304 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLK----------FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRD-- 371 (944)
Q Consensus 304 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-- 371 (944)
..++|++.+++++..+|++..+|+..+.++...|+ ++++++.++++++.+|++..+|...+.++...+
T Consensus 44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC
T ss_pred CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccc
Confidence 34789999999999999999999999999999998 999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------------
Q 002273 372 NLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG-KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA------------ 438 (944)
Q Consensus 372 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~------------ 438 (944)
++++++++++++++.+|.+..+|...+.++...| .+++++++++++++.+|.+..+|..++.++...
T Consensus 124 ~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~ 203 (567)
T 1dce_A 124 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRL 203 (567)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSS
T ss_pred cHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccc
Confidence 7799999999999999999999999999999999 999999999999999999999999999999885
Q ss_pred --CCHHHHHHHHHHHHhhCCCChhhhhhHHH
Q 002273 439 --GSISLAIDAYEQCLKIDPDSRNAGQNRLL 467 (944)
Q Consensus 439 --g~~~eA~~~~~~al~l~P~~~~a~~~~~~ 467 (944)
+.+++|++++.+++.++|++..++.++..
T Consensus 204 ~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ 234 (567)
T 1dce_A 204 PENVLLKELELVQNAFFTDPNDQSAWFYHRW 234 (567)
T ss_dssp CHHHHHHHHHHHHHHHHHCSSCSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhCCCCccHHHHHHH
Confidence 56899999999999999999998877543
No 152
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.42 E-value=2.2e-12 Score=118.86 Aligned_cols=122 Identities=22% Similarity=0.270 Sum_probs=109.8
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 002273 320 WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 399 (944)
Q Consensus 320 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 399 (944)
|.....+..+|..+...|++++|+..+++++...|++..++..+|.++...|++++|+.+++++++..|+++.++..+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 88 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence 34567888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q 002273 400 VYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSI 441 (944)
Q Consensus 400 ~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~ 441 (944)
++...|++++|+.+++++++.+|++..++..++.++...|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999888875
No 153
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.42 E-value=3e-13 Score=135.84 Aligned_cols=151 Identities=20% Similarity=0.154 Sum_probs=119.3
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH----------------HHHHHHHH
Q 002273 302 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA----------------EACNNLGV 365 (944)
Q Consensus 302 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----------------~~~~~la~ 365 (944)
.++++++.+.++......+.....+..+|..+...|++++|+..|++++++.|.++ .++.++|.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 96 (198)
T 2fbn_A 17 LYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLAT 96 (198)
T ss_dssp -----CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 34455555555544444445567788999999999999999999999999988876 88999999
Q ss_pred HHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002273 366 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAI 445 (944)
Q Consensus 366 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~ 445 (944)
++...|++++|+.+++++++++|++..+++.+|.++..+|++++|+.+|+++++++|++..++..++.++...++..++.
T Consensus 97 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 97 CYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888887776
Q ss_pred -HHHHHHH
Q 002273 446 -DAYEQCL 452 (944)
Q Consensus 446 -~~~~~al 452 (944)
..|.+.+
T Consensus 177 ~~~~~~~f 184 (198)
T 2fbn_A 177 KLTFGGMF 184 (198)
T ss_dssp --------
T ss_pred HHHHHHHh
Confidence 4444443
No 154
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.41 E-value=2.8e-12 Score=118.44 Aligned_cols=113 Identities=16% Similarity=0.161 Sum_probs=101.5
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHH
Q 002273 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160 (944)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 160 (944)
.+.++..+|..++..|+|++|+..|+++++++|+++.++..+|.+|..+|++++|+..|+++++++|++...+..++.++
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 35678889999999999999999999999999999999999999999999999999999999999998877777788889
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHH
Q 002273 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAY 194 (944)
Q Consensus 161 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 194 (944)
..+|.++...|++++|++.|+++++.+|+ ++..
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~ 119 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELV 119 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHH
Confidence 99999999999999999999999988775 4443
No 155
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.41 E-value=2.3e-12 Score=124.91 Aligned_cols=116 Identities=22% Similarity=0.219 Sum_probs=109.3
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 002273 320 WHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGV 399 (944)
Q Consensus 320 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 399 (944)
+.++..++.+|.++...|++++|+..|+++++++|+++.+++++|.++...|++++|+.+|+++++++|++..+++++|.
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 44577899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002273 400 VYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 435 (944)
Q Consensus 400 ~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~ 435 (944)
++..+|++++|+.+|+++++++|++..+++.++...
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 123 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLET 123 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 999999999999999999999999988777666543
No 156
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.40 E-value=4.5e-12 Score=133.23 Aligned_cols=245 Identities=14% Similarity=0.004 Sum_probs=186.0
Q ss_pred HHHcCChHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002273 167 LKLAGNTQDGIQKYYEALKIDPHY-APAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAI 245 (944)
Q Consensus 167 ~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 245 (944)
.+-.|+|..++... -+..|.+ ....+.+.++|..+|++.... ..+....+...++..+. ++ |+
T Consensus 23 ~fy~G~yq~~i~e~---~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~--------~~~~~~~a~~~la~~~~--~~---a~ 86 (310)
T 3mv2_B 23 NYYTGNFVQCLQEI---EKFSKVTDNTLLFYKAKTLLALGQYQSQD--------PTSKLGKVLDLYVQFLD--TK---NI 86 (310)
T ss_dssp HHTTTCHHHHTHHH---HTSSCCCCHHHHHHHHHHHHHTTCCCCCC--------SSSTTHHHHHHHHHHHT--TT---CC
T ss_pred HHHhhHHHHHHHHH---HhcCccchHHHHHHHHHHHHHcCCCccCC--------CCCHHHHHHHHHHHHhc--cc---HH
Confidence 44579999999843 3344443 345666778888999887421 11222334444444442 22 78
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCC--CCH
Q 002273 246 ACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNW--HYA 323 (944)
Q Consensus 246 ~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p--~~~ 323 (944)
..+++.+...+........++.++.. .|++++|++.+.+.+..+| .+.
T Consensus 87 ~~l~~l~~~~~~~~~~~~~la~i~~~------------------------------~g~~eeAL~~l~~~i~~~~~~~~l 136 (310)
T 3mv2_B 87 EELENLLKDKQNSPYELYLLATAQAI------------------------------LGDLDKSLETCVEGIDNDEAEGTT 136 (310)
T ss_dssp HHHHHTTTTSCCCHHHHHHHHHHHHH------------------------------HTCHHHHHHHHHHHHTSSCSTTHH
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHH------------------------------cCCHHHHHHHHHHHhccCCCcCcH
Confidence 88888887765555556666666544 5677999999999999887 788
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC----CHHHHHHH--HHHHHHCC--CHHHHHHHHHHHHhhCCC--CHHH
Q 002273 324 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPH----CAEACNNL--GVIYKDRD--NLDKAVECYQMALSIKPN--FSQS 393 (944)
Q Consensus 324 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~----~~~~~~~l--a~~~~~~g--~~~~A~~~~~~al~~~p~--~~~~ 393 (944)
+++..++.++..+|+.+.|.+.++++.+.+|+ +..+...+ +++....| ++++|...|+++.+..|+ ....
T Consensus 137 ea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~l 216 (310)
T 3mv2_B 137 ELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLG 216 (310)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHH
Confidence 99999999999999999999999999999983 22333444 54466556 999999999999888887 3344
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhh
Q 002273 394 LNNLGVVYTVQGKMDAAAEMIEKAIAA----------NPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAG 462 (944)
Q Consensus 394 ~~~la~~~~~~g~~~~A~~~l~~al~~----------~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~ 462 (944)
+++ ++..+|++++|.+.++.+++. +|+++.++.+++.+...+|+ +|.++++++.+.+|+++.+.
T Consensus 217 Lln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 217 LLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp HHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred HHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 444 899999999999999987776 48899999999999999998 89999999999999998554
No 157
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.40 E-value=1.3e-12 Score=122.57 Aligned_cols=107 Identities=11% Similarity=0.060 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC-------CH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----
Q 002273 358 EACNNLGVIYKDRDNLDKAVECYQMALSIKPN-------FS-----QSLNNLGVVYTVQGKMDAAAEMIEKAIAA----- 420 (944)
Q Consensus 358 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-------~~-----~~~~~la~~~~~~g~~~~A~~~l~~al~~----- 420 (944)
..+.++|..+...|++++|+..|+++++++|+ +. .+|.++|.++..+|++++|+..+++++++
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 34555566666666666666666666666665 33 38888888888888999998888888888
Q ss_pred --CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhh
Q 002273 421 --NPTYAEAY----NNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 464 (944)
Q Consensus 421 --~p~~~~a~----~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~ 464 (944)
+|++..+| +++|.++..+|++++|+..|+++++++|++......
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~ 141 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPG 141 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTT
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 99999999 999999999999999999999999999998776554
No 158
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.40 E-value=2.5e-12 Score=118.76 Aligned_cols=101 Identities=25% Similarity=0.330 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHH
Q 002273 357 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY-------AEAYN 429 (944)
Q Consensus 357 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~-------~~a~~ 429 (944)
+.++.++|..++..|++++|+++|+++++++|+++.++.++|.+|..+|++++|++.++++++++|++ ..++.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 34556677777777777777777777777777777777777777777777777777777777765543 34677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002273 430 NLGVLYRDAGSISLAIDAYEQCLKIDPD 457 (944)
Q Consensus 430 ~la~~~~~~g~~~eA~~~~~~al~l~P~ 457 (944)
++|.++..+|++++|+++|+++++..|+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 7788888888888888888888877775
No 159
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.39 E-value=7.8e-12 Score=134.08 Aligned_cols=170 Identities=12% Similarity=0.017 Sum_probs=143.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHH
Q 002273 84 AHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNAC------AHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157 (944)
Q Consensus 84 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~------~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 157 (944)
.+...+..+...|++++|+..++++++..+..+. .+..+|.++...+++++|+..|+++++..+...+. ...+
T Consensus 77 ~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~-~~~~ 155 (293)
T 3u3w_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV-YQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCT-THHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccH-HHHH
Confidence 3445577889999999999999999998776654 33458899999999999999999999976654442 3456
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------
Q 002273 158 IVLTDLGTSLKLAGNTQDGIQKYYEALKI-------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMY------ 224 (944)
Q Consensus 158 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------ 224 (944)
.++..+|.++...|++++|+.+|+++++. .+....+++++|.+|..+|++++|+.+++++++..+..
T Consensus 156 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~ 235 (293)
T 3u3w_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence 67999999999999999999999999953 22235688999999999999999999999999875432
Q ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh
Q 002273 225 AEAYCNMGVIYKNRGD-LESAIACYERCLAV 254 (944)
Q Consensus 225 ~~~~~~la~~~~~~g~-~~~A~~~~~~al~~ 254 (944)
..++..+|.++..+|+ +++|+++|++++.+
T Consensus 236 ~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 7899999999999995 69999999999875
No 160
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.39 E-value=9.9e-12 Score=126.03 Aligned_cols=141 Identities=14% Similarity=0.095 Sum_probs=117.4
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (944)
....++.+|..++..|++++|+..|++++ + .++.+++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 5 EAISLWNEGVLAADKKDWKGALDAFSAVQ--D-PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSS--S-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHc--C-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 34567899999999999999999999995 3 37899999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCChhHH---------hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 002273 127 KDEGRLVEAAESYHKALSADPSYKPAA---------ECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY 190 (944)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~p~~~~~~---------~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 190 (944)
...|++++|+..|+++++..|++.... .....++..+|.++...|++++|+..|+++++.+|++
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 999999999999999999998865110 0112345666666666677777777777777666654
No 161
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.39 E-value=2.4e-12 Score=117.72 Aligned_cols=101 Identities=16% Similarity=0.155 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 002273 359 ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA 438 (944)
Q Consensus 359 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~ 438 (944)
.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|++..+++.+|.++...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 45677888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHhhCCCCh
Q 002273 439 GSISLAIDAYEQCLKIDPDSR 459 (944)
Q Consensus 439 g~~~eA~~~~~~al~l~P~~~ 459 (944)
|++++|+..|+++++++|++.
T Consensus 99 g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHC------
T ss_pred CCHHHHHHHHHHHHHhCcCCC
Confidence 888888888888888888764
No 162
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.38 E-value=1.8e-11 Score=111.57 Aligned_cols=117 Identities=42% Similarity=0.622 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 002273 323 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYT 402 (944)
Q Consensus 323 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 402 (944)
...+..+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+.+++++++..|.+..++..+|.++.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 56777778888888888888888888888877777788888888888888888888888888887877777888888888
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 002273 403 VQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 439 (944)
Q Consensus 403 ~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g 439 (944)
..|++++|+.+++++++.+|++..++..++.++...|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 8888888888888888888877777777777776554
No 163
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.38 E-value=8.3e-12 Score=115.56 Aligned_cols=123 Identities=15% Similarity=0.155 Sum_probs=111.9
Q ss_pred CCCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 002273 42 TLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTH 121 (944)
Q Consensus 42 ~~~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 121 (944)
...+.....++.+|..++..|++++|+..|+++++.+|++..+++.+|.++...|++++|+..++++++.+|++..++..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 89 (133)
T 2lni_A 10 HMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTR 89 (133)
T ss_dssp CSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHH
Confidence 44566899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcC
Q 002273 122 CGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAG 171 (944)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g 171 (944)
+|.++...|++++|+..|+++++.+|.+... +..++.++...|
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-------~~~l~~~~~~~~ 132 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDLDSSCKEA-------ADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCGGGTHH-------HHHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhCCCchHH-------HHHHHHHHHHhc
Confidence 9999999999999999999999999988765 444555554444
No 164
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.38 E-value=1.6e-11 Score=118.58 Aligned_cols=135 Identities=13% Similarity=0.095 Sum_probs=121.3
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (944)
.+..++.+|..++..|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++.+|.++.+++.+|.++
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 002273 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI 186 (944)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (944)
...|++++|+..|+++++.+|++...+. ...++..+...|++++|+..+.+....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~-----~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKM-----KYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 9999999999999999999999876532 234444566778888888888876543
No 165
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.37 E-value=3.6e-13 Score=154.00 Aligned_cols=151 Identities=18% Similarity=0.176 Sum_probs=132.8
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---------------HHHHHHHHH
Q 002273 301 LEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---------------AEACNNLGV 365 (944)
Q Consensus 301 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------------~~~~~~la~ 365 (944)
..+++++|+..++.++...|..+..+..+|..+...|++++|+..|+++++++|.+ ..+++++|.
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 34556777777787888888888999999999999999999999999999999988 689999999
Q ss_pred HHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002273 366 IYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAI 445 (944)
Q Consensus 366 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~ 445 (944)
+|..+|++++|+.+|+++++++|++..+++++|.+|..+|++++|+..|+++++++|++..++..++.++..+|++++|.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred HH-HHHH
Q 002273 446 DA-YEQC 451 (944)
Q Consensus 446 ~~-~~~a 451 (944)
.. |++.
T Consensus 406 ~~~~~~~ 412 (457)
T 1kt0_A 406 RRIYANM 412 (457)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 53 4433
No 166
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.36 E-value=7.7e-12 Score=116.83 Aligned_cols=104 Identities=16% Similarity=0.162 Sum_probs=53.3
Q ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 002273 354 PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGV 433 (944)
Q Consensus 354 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~ 433 (944)
+.++..++.+|.++...|++++|+.+|+++++.+|+++.++.++|.++...|++++|+..++++++++|+++.+++.+|.
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 34444455555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCC
Q 002273 434 LYRDAGSISLAIDAYEQCLKIDPD 457 (944)
Q Consensus 434 ~~~~~g~~~eA~~~~~~al~l~P~ 457 (944)
++...|++++|+..|+++++++|+
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 555555555555555555555444
No 167
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.36 E-value=1.1e-12 Score=131.64 Aligned_cols=165 Identities=15% Similarity=0.053 Sum_probs=113.8
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhH---------HhHHHH
Q 002273 88 KGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPA---------AECLAI 158 (944)
Q Consensus 88 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---------~~~la~ 158 (944)
.+.+....|.+++|.+.++......+.....+..+|..++..|++++|+..|+++++..|.+... ......
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence 34444555666666666655555455556667777777777777777777777777776665411 011235
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 002273 159 VLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNR 238 (944)
Q Consensus 159 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 238 (944)
++..+|.++...|++++|+..++++++.+|++..+++.+|.+|...|++++|+..|+++++.+|++..++..++.++...
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 169 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL 169 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 67888999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred CCHHHHH-HHHHHHH
Q 002273 239 GDLESAI-ACYERCL 252 (944)
Q Consensus 239 g~~~~A~-~~~~~al 252 (944)
++..++. ..+.+.+
T Consensus 170 ~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 170 KEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHC----------
T ss_pred HHHHHHHHHHHHHHh
Confidence 8777776 4444443
No 168
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.34 E-value=1.4e-11 Score=114.95 Aligned_cols=124 Identities=16% Similarity=0.077 Sum_probs=113.1
Q ss_pred HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHH
Q 002273 317 YYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNN 396 (944)
Q Consensus 317 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 396 (944)
..++.++..+..+|.++...|++++|+..|++++..+|+++.++..+|.++...|++++|+..++++++++|+++.+++.
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 82 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF 82 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence 34677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCC
Q 002273 397 LGVVYTVQGKMDAAAEMIEKAIAANPT-----YAEAYNNLGVLYRDAGS 440 (944)
Q Consensus 397 la~~~~~~g~~~~A~~~l~~al~~~p~-----~~~a~~~la~~~~~~g~ 440 (944)
+|.++...|++++|+..|+++++++|+ +..+...+..+..+...
T Consensus 83 l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 131 (137)
T 3q49_B 83 LGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWN 131 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999887 67777777776655443
No 169
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.34 E-value=1.2e-11 Score=140.55 Aligned_cols=230 Identities=14% Similarity=0.121 Sum_probs=164.8
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 002273 48 GKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYK 127 (944)
Q Consensus 48 ~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 127 (944)
+...+..|..+...|+|++|++.|.++++..|.........+......+..+ .++..+|.+|.
T Consensus 4 p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----------------~al~~l~~~y~ 66 (434)
T 4b4t_Q 4 PGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQE-----------------TSILELGQLYV 66 (434)
T ss_dssp TTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHH-----------------HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHH-----------------HHHHHHHHHHH
Confidence 3457788888888889999999888888887765433222222211111111 23466788888
Q ss_pred HcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC------CCCHHHHHHHHHHH
Q 002273 128 DEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID------PHYAPAYYNLGVVY 201 (944)
Q Consensus 128 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~ 201 (944)
..|++++|++.+.+++...+..... .....+...++.++...|++++|+..+++++... +....++..+|.+|
T Consensus 67 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 145 (434)
T 4b4t_Q 67 TMGAKDKLREFIPHSTEYMMQFAKS-KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLH 145 (434)
T ss_dssp HHTCHHHHHHHHHHTHHHHHTSCHH-HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHccch-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 8888888888888877766554432 2223456667777777888888888888887652 23367888999999
Q ss_pred HHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhh
Q 002273 202 SELMQYDTALGCYEKAALE------RPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK 275 (944)
Q Consensus 202 ~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~ 275 (944)
...|+|++|+.++++++.. .+...+++..++.+|...|++++|...+++++...+.........+.++...|..
T Consensus 146 ~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~ 225 (434)
T 4b4t_Q 146 YQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGIL 225 (434)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred HHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHH
Confidence 9999999999999998875 2334678999999999999999999999999887554333334445555555543
Q ss_pred hhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHh
Q 002273 276 TYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYY 318 (944)
Q Consensus 276 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~ 318 (944)
+...+++.+|..+|.+++..
T Consensus 226 -----------------------~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 226 -----------------------HCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp -----------------------TTSSSCHHHHHHHHHHHHHH
T ss_pred -----------------------HHHHHhHHHHHHHHHHHHHH
Confidence 67788999999999888764
No 170
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.33 E-value=3e-11 Score=108.85 Aligned_cols=106 Identities=20% Similarity=0.300 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 002273 358 EACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 437 (944)
Q Consensus 358 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~ 437 (944)
..++.+|.++...|++++|+..|+++++..|+++.++..+|.++...|++++|+..++++++.+|++..++..+|.++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34444555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred cCCHHHHHHHHHHHHhhCCCChhhhh
Q 002273 438 AGSISLAIDAYEQCLKIDPDSRNAGQ 463 (944)
Q Consensus 438 ~g~~~eA~~~~~~al~l~P~~~~a~~ 463 (944)
.|++++|++.|+++++.+|++..++.
T Consensus 85 ~~~~~~A~~~~~~~~~~~~~~~~~~~ 110 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLKHEANNPQLKE 110 (118)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred HhhHHHHHHHHHHHHHcCCCCHHHHH
Confidence 55555555555555555555544433
No 171
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.32 E-value=9.2e-12 Score=113.78 Aligned_cols=102 Identities=20% Similarity=0.249 Sum_probs=94.0
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q 002273 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKD 128 (944)
Q Consensus 49 ~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 128 (944)
..++.+|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|+++.++..+|.++..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCh
Q 002273 129 EGRLVEAAESYHKALSADPSYK 150 (944)
Q Consensus 129 ~g~~~~A~~~~~~al~~~p~~~ 150 (944)
.|++++|+..|+++++.+|++.
T Consensus 98 ~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHC------
T ss_pred cCCHHHHHHHHHHHHHhCcCCC
Confidence 9999999999999999999764
No 172
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.32 E-value=1.4e-11 Score=123.55 Aligned_cols=159 Identities=19% Similarity=0.167 Sum_probs=131.7
Q ss_pred hhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHCCCH
Q 002273 300 KLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF------NPHCAEACNNLGVIYKDRDNL 373 (944)
Q Consensus 300 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~ 373 (944)
...|++++|.+.++......+....++..+|.++...|++++|+.++++++.+ .+....++..+|.++...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 35788999999665555433366889999999999999999999999999984 344477899999999999999
Q ss_pred HHHHHHHHHHHhh---CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHcCC
Q 002273 374 DKAVECYQMALSI---KPNF----SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP--TY----AEAYNNLGVLYRDAGS 440 (944)
Q Consensus 374 ~~A~~~~~~al~~---~p~~----~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p--~~----~~a~~~la~~~~~~g~ 440 (944)
++|+.++++++++ .+++ ..++.++|.++...|++++|+.+++++++..+ .+ ..++..+|.++...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 9999999999988 4433 45789999999999999999999999997632 22 3457899999999999
Q ss_pred HHHHHHHHHHHHhhCCCC
Q 002273 441 ISLAIDAYEQCLKIDPDS 458 (944)
Q Consensus 441 ~~eA~~~~~~al~l~P~~ 458 (944)
+++|++++++++++....
T Consensus 163 ~~~A~~~~~~al~~~~~~ 180 (203)
T 3gw4_A 163 LLEAQQHWLRARDIFAEL 180 (203)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 999999999999875543
No 173
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.32 E-value=8.9e-12 Score=116.93 Aligned_cols=111 Identities=17% Similarity=0.066 Sum_probs=102.3
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHhc---
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSG-------NVE-----AHIGKGICLQMQNMGRLAFDSFSEAVKL--- 111 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~-------~~~-----~~~~la~~~~~~g~~~~A~~~~~~al~~--- 111 (944)
.+..++..|..++..|+|++|+..|+++++.+|+ +.. +|.++|.++..+|++++|+..|++++++
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 4677899999999999999999999999999999 544 9999999999999999999999999999
Q ss_pred ----CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHH
Q 002273 112 ----DPQNACAH----THCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLA 157 (944)
Q Consensus 112 ----~p~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 157 (944)
+|++..+| +.+|.++..+|++++|+..|+++++++|++......+.
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~ 143 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKE 143 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHH
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 99999999 99999999999999999999999999998876544433
No 174
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.31 E-value=1e-11 Score=120.05 Aligned_cols=103 Identities=18% Similarity=0.144 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhh------------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 002273 323 ADAMYNLGVAYGEMLKFDMAIVFYELAFHF------------------NPHCAEACNNLGVIYKDRDNLDKAVECYQMAL 384 (944)
Q Consensus 323 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 384 (944)
+..+...|..++..|++++|+..|++++.. +|....++.++|.++...|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 456777788888888888888888888776 33333444444444444444444444444444
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 002273 385 SIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYA 425 (944)
Q Consensus 385 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~ 425 (944)
+++|+++.+++.+|.+|..+|++++|+..|+++++++|++.
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 44444444444444444444444444444444444444444
No 175
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.31 E-value=3.3e-11 Score=110.85 Aligned_cols=123 Identities=19% Similarity=0.177 Sum_probs=112.6
Q ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 002273 44 KGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (944)
Q Consensus 44 ~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (944)
.+.....++.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..++++++.+|+++.++..+|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 87 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHH
Confidence 44577889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCCh
Q 002273 124 ILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNT 173 (944)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~ 173 (944)
.++...|++++|+..|+++++..|++... +..++.++...|++
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~-------~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELDPDNETY-------KSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHH-------HHHHHHHHHHHTTC
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCccchHH-------HHHHHHHHHHHhcC
Confidence 99999999999999999999999998765 55566666665654
No 176
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.31 E-value=5e-13 Score=153.43 Aligned_cols=141 Identities=18% Similarity=0.201 Sum_probs=125.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q 002273 323 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYT 402 (944)
Q Consensus 323 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 402 (944)
+..+..+|..+...|++++|++.|+++++.+|++..++.++|.++..+|++++|++.|+++++++|+++.+++++|.+|.
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 85 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 85 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34566778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHhhCCCChhhhh
Q 002273 403 VQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL--YRDAGSISLAIDAYE-----------QCLKIDPDSRNAGQ 463 (944)
Q Consensus 403 ~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~--~~~~g~~~eA~~~~~-----------~al~l~P~~~~a~~ 463 (944)
.+|++++|++.|+++++++|++..++..++.+ +...|++++|++.++ ++++++|+...++.
T Consensus 86 ~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~ 159 (477)
T 1wao_1 86 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKL 159 (477)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSCCC
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhcccccccccccc
Confidence 99999999999999999999999999999998 888999999999999 89999888765543
No 177
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.31 E-value=1.2e-11 Score=124.01 Aligned_cols=163 Identities=14% Similarity=0.050 Sum_probs=115.1
Q ss_pred HHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCC
Q 002273 58 LRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL------DPQNACAHTHCGILYKDEGR 131 (944)
Q Consensus 58 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~ 131 (944)
++..|++++|.+.++.+....+....++..+|.++...|++++|+..++++++. .+....++..+|.++...|+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 467899999999666654433367899999999999999999999999999983 34456789999999999999
Q ss_pred HHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC--C----HHHHHHHHHHHHHcC
Q 002273 132 LVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPH--Y----APAYYNLGVVYSELM 205 (944)
Q Consensus 132 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~g 205 (944)
+++|+..++++++......+.....+.++..+|.++...|++++|+..++++++..+. + ..++..+|.++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 9999999999998732222111234556777777777788888888888777754211 1 223455566666666
Q ss_pred CHHHHHHHHHHHHHh
Q 002273 206 QYDTALGCYEKAALE 220 (944)
Q Consensus 206 ~~~~A~~~~~~al~~ 220 (944)
++++|+.++++++++
T Consensus 162 ~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 162 NLLEAQQHWLRARDI 176 (203)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 666666666655543
No 178
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.31 E-value=5.2e-11 Score=107.30 Aligned_cols=115 Identities=15% Similarity=0.216 Sum_probs=110.4
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 002273 322 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVY 401 (944)
Q Consensus 322 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 401 (944)
.+..+..+|..+...|++++|+..|++++..+|.++.++..+|.++...|++++|+..++++++..|+++.++..+|.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002273 402 TVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 436 (944)
Q Consensus 402 ~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~ 436 (944)
...|++++|+..++++++.+|++..++..++.+..
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 99999999999999999999999999999888753
No 179
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.30 E-value=1.5e-11 Score=118.94 Aligned_cols=105 Identities=17% Similarity=0.157 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhh------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002273 357 AEACNNLGVIYKDRDNLDKAVECYQMALSI------------------KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAI 418 (944)
Q Consensus 357 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~------------------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al 418 (944)
...+..+|..++..|++++|+..|++++++ +|....++.++|.+|..+|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 567889999999999999999999999999 66777899999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhh
Q 002273 419 AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNA 461 (944)
Q Consensus 419 ~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a 461 (944)
+++|+++.+++.+|.+|..+|++++|+..|+++++++|++..+
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 133 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASV 133 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHH
Confidence 9999999999999999999999999999999999999998844
No 180
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=99.30 E-value=1.8e-11 Score=146.30 Aligned_cols=186 Identities=11% Similarity=0.057 Sum_probs=143.1
Q ss_pred CCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCceEEEecCCCC-------CHHHHHHHHHHHHHcCCCCCcEEEccC
Q 002273 679 TNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFC-------CDSVRHRFLSTLEQLGLESLRVDLLPL 749 (944)
Q Consensus 679 ~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~-------~~~~~~~~~~~~~~~gi~~~rv~~~~~ 749 (944)
..+.++++++++. .|..+.+++++.++....|+.+|+|+|++.. .......+.+.+++.|+ .++|.|+|.
T Consensus 569 ~~~~~vIl~vGRl~~~KGid~LIeA~~~L~~~~~~v~LvIvG~g~~~~~~~~e~~~~~~~L~~li~~lgL-~~~V~flG~ 647 (816)
T 3s28_A 569 DKKKPILFTMARLDRVKNLSGLVEWYGKNTRLRELANLVVVGGDRRKESKDNEEKAEMKKMYDLIEEYKL-NGQFRWISS 647 (816)
T ss_dssp CTTSCEEEEECCCCTTTTHHHHHHHHHHCHHHHHHCEEEEECCCTTSCCCCHHHHHHHHHHHHHHHHTTC-BBBEEEECC
T ss_pred CCCCeEEEEEccCcccCCHHHHHHHHHHHHhhCCCeEEEEEeCCCcccccchhhHHHHHHHHHHHHHcCC-CCcEEEccC
Confidence 4455667777754 8999999999999998889999999987631 11266788899999999 589999996
Q ss_pred ccC---cHHHHHhcc-cccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhH-HHhhcCCccccc--CCHHHH
Q 002273 750 ILL---NHDHMQAYS-LMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVS-LLTKVGLKHLIA--KNEDEY 821 (944)
Q Consensus 750 ~~~---~~~~~~~~~-~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~-~l~~~gl~~~v~--~~~~~y 821 (944)
+.+ ..+....|. .+||++-|..+ +.|.+.+|||+||+|||+ +++|+. -+-.-|...++. .|++++
T Consensus 648 ~~~~v~~~eL~~~~~~aaDvfV~PS~~EgfglvllEAMA~G~PVIa-------sd~GG~~EiV~dg~~Gllv~p~D~e~L 720 (816)
T 3s28_A 648 QMDRVRNGELYRYICDTKGAFVQPALYEAFGLTVVEAMTCGLPTFA-------TCKGGPAEIIVHGKSGFHIDPYHGDQA 720 (816)
T ss_dssp CCCHHHHHHHHHHHHHTTCEEEECCSCBSSCHHHHHHHHTTCCEEE-------ESSBTHHHHCCBTTTBEEECTTSHHHH
T ss_pred ccccCCHHHHHHHHHhcCeEEEECCCccCccHHHHHHHHcCCCEEE-------eCCCChHHHHccCCcEEEeCCCCHHHH
Confidence 543 356777776 68999988766 789999999999999999 666611 000113233333 388999
Q ss_pred HHHHHHHh----cCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH--HHHHHhc
Q 002273 822 VQLALQLA----SDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN--MWHRYCK 874 (944)
Q Consensus 822 ~~~a~~l~----~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~--~~~~~~~ 874 (944)
.+...++. .|++.+.++++..++.+.+. |+++.++..++++|+. .|.....
T Consensus 721 A~aI~~lL~~Ll~d~~~~~~m~~~ar~~a~~~--fSwe~~a~~ll~lY~~~g~wk~vs~ 777 (816)
T 3s28_A 721 ADTLADFFTKCKEDPSHWDEISKGGLQRIEEK--YTWQIYSQRLLTLTGVYGFWKHVSN 777 (816)
T ss_dssp HHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHS--CCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh--CCHHHHHHHHHHHHHHHhHhhhcch
Confidence 98886665 89999999999999987544 9999999999999986 4664443
No 181
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=4.4e-11 Score=113.00 Aligned_cols=117 Identities=14% Similarity=0.088 Sum_probs=71.5
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHH
Q 002273 319 NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLN 395 (944)
Q Consensus 319 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 395 (944)
.|.....++.+|..+...|++++|+..|+++++.+|++ ..++..+|.++...|++++|+..++++++.+|++..+++
T Consensus 24 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 24 GASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp TCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 34455666666666666666666666666666666655 555666666666666666666666666666666666666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002273 396 NLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 435 (944)
Q Consensus 396 ~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~ 435 (944)
.+|.++...|++++|+.+|+++++.+|++..++..++.+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 6666666666666666666666666666655555555443
No 182
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.30 E-value=1.3e-11 Score=110.23 Aligned_cols=107 Identities=14% Similarity=0.085 Sum_probs=94.3
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHH
Q 002273 353 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPT--YAEAYNN 430 (944)
Q Consensus 353 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~--~~~a~~~ 430 (944)
+|++..++..+|.++...|++++|+.+|+++++..|.+..++..+|.++...|++++|+.+++++++..|+ +..++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 56777788888888888888999999999988888888888889999999999999999999999999888 8889999
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHhhCCCCh
Q 002273 431 LGVLYRDA-GSISLAIDAYEQCLKIDPDSR 459 (944)
Q Consensus 431 la~~~~~~-g~~~eA~~~~~~al~l~P~~~ 459 (944)
+|.++... |++++|++++++++...|++.
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 99999999 999999999999999888764
No 183
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.30 E-value=2.3e-12 Score=147.34 Aligned_cols=154 Identities=16% Similarity=0.130 Sum_probs=127.5
Q ss_pred HhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChh--------HHhHHHHHHHHHHH
Q 002273 94 MQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKP--------AAECLAIVLTDLGT 165 (944)
Q Consensus 94 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~--------~~~~la~~~~~lg~ 165 (944)
..+++++|+..|+++++.+|+....+..+|..++..|++++|+..|+++++++|.+.. .....+.++.++|.
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 3456677888888888888888889999999999999999999999999998888631 12233556888999
Q ss_pred HHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002273 166 SLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAI 245 (944)
Q Consensus 166 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 245 (944)
++..+|++++|+..|+++++++|++..+++.+|.+|..+|++++|+..|+++++++|++..++..++.++...+++++|.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888776
Q ss_pred HH
Q 002273 246 AC 247 (944)
Q Consensus 246 ~~ 247 (944)
..
T Consensus 406 ~~ 407 (457)
T 1kt0_A 406 RR 407 (457)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 184
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.28 E-value=1e-10 Score=106.53 Aligned_cols=113 Identities=41% Similarity=0.622 Sum_probs=105.6
Q ss_pred CCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 002273 353 NPHC-AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNL 431 (944)
Q Consensus 353 ~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~l 431 (944)
+|.. ...++.+|.++...|++++|++.|+++++..|++..++..+|.++...|++++|+.+++++++..|.+..++..+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 83 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNL 83 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHH
Confidence 4544 778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhhH
Q 002273 432 GVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNR 465 (944)
Q Consensus 432 a~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~ 465 (944)
|.++...|++++|+.+|+++++.+|++..+..++
T Consensus 84 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 117 (125)
T 1na0_A 84 GNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNL 117 (125)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 9999999999999999999999999998877664
No 185
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=99.28 E-value=4.5e-11 Score=120.05 Aligned_cols=155 Identities=15% Similarity=0.136 Sum_probs=123.5
Q ss_pred CCCCCCeEEEecCC---CCcCCHHHHHHHHHHH--hHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEE-ccCc
Q 002273 677 ALTNGFITFGSFNN---LAKITPKVLQVWARIL--CAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDL-LPLI 750 (944)
Q Consensus 677 ~~~~~~~~f~~~~~---~~K~~~~~~~~~~~il--~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~-~~~~ 750 (944)
+++++. +++++++ ..|..+.++++|..+. ...|+.+|+++|.+ .+.....+++.+.++| +|.| .|.+
T Consensus 32 ~~~~~~-~i~~~G~~~~~~K~~~~li~a~~~l~~~~~~~~~~l~i~G~~--~~~~~~~l~~~~~~~~----~v~~~~g~~ 104 (200)
T 2bfw_A 32 GMDEGV-TFMFIGRFDRGQKGVDVLLKAIEILSSKKEFQEMRFIIIGKG--DPELEGWARSLEEKHG----NVKVITEML 104 (200)
T ss_dssp TCCSCE-EEEEESCBCSSSSCHHHHHHHHHHHTTSGGGGGEEEEEECCB--CHHHHHHHHHHHHHCT----TEEEECSCC
T ss_pred CCCCCC-EEEEeeccccccCCHHHHHHHHHHHHhhccCCCeEEEEECCC--ChHHHHHHHHHHHhcC----CEEEEeccC
Confidence 343443 4555554 6699999999999998 88899999999865 2236778888888887 8999 9998
Q ss_pred cCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhHHHhh-cCCcccccC--CHHHHHHHHH
Q 002273 751 LLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTK-VGLKHLIAK--NEDEYVQLAL 826 (944)
Q Consensus 751 ~~~~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~-~gl~~~v~~--~~~~y~~~a~ 826 (944)
+ ..+....|+.+|++|-|..+ +.|++.+|||++|+|||+ +++++ +-.. -|-..++.. |.+++++...
T Consensus 105 ~-~~~~~~~~~~ad~~l~ps~~e~~~~~~~Ea~a~G~PvI~-------~~~~~-~~e~~~~~~g~~~~~~~~~~l~~~i~ 175 (200)
T 2bfw_A 105 S-REFVRELYGSVDFVIIPSYFEPFGLVALEAMCLGAIPIA-------SAVGG-LRDIITNETGILVKAGDPGELANAIL 175 (200)
T ss_dssp C-HHHHHHHHTTCSEEEECCSCCSSCHHHHHHHHTTCEEEE-------ESCHH-HHHHCCTTTCEEECTTCHHHHHHHHH
T ss_pred C-HHHHHHHHHHCCEEEECCCCCCccHHHHHHHHCCCCEEE-------eCCCC-hHHHcCCCceEEecCCCHHHHHHHHH
Confidence 7 67899999999999998876 669999999999999999 55552 1122 244455544 9999999999
Q ss_pred HHhc-CHHHHHHHHHHHHHHhh
Q 002273 827 QLAS-DVTALANLRMSLRDLMS 847 (944)
Q Consensus 827 ~l~~-d~~~~~~~r~~~~~~~~ 847 (944)
++.+ |++.+.++++..++...
T Consensus 176 ~l~~~~~~~~~~~~~~a~~~~~ 197 (200)
T 2bfw_A 176 KALELSRSDLSKFRENCKKRAM 197 (200)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHH
Confidence 9999 99999999999888754
No 186
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.27 E-value=4.8e-12 Score=138.51 Aligned_cols=139 Identities=18% Similarity=0.152 Sum_probs=89.7
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH-----------------HHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 002273 322 YADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA-----------------EACNNLGVIYKDRDNLDKAVECYQMAL 384 (944)
Q Consensus 322 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~al 384 (944)
.+..+..+|..+...|++++|+..|++++...|++. .+++++|.++...|++++|+.+|++++
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 356788999999999999999999999999999876 388899999999999999999999999
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhCCCChh
Q 002273 385 SIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVL-YRDAGSISLAIDAYEQCLKIDPDSRN 460 (944)
Q Consensus 385 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~-~~~~g~~~eA~~~~~~al~l~P~~~~ 460 (944)
+++|++..+++++|.+|..+|++++|+..|+++++++|++..++..++.+ ....+..+++...|++++...|+++.
T Consensus 258 ~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 258 TEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------------
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999888 44556778888899999999888754
No 187
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.27 E-value=2.7e-09 Score=122.55 Aligned_cols=337 Identities=7% Similarity=-0.093 Sum_probs=223.4
Q ss_pred hCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-HHHHHH
Q 002273 60 SRN-KFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGR-LVEAAE 137 (944)
Q Consensus 60 ~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-~~~A~~ 137 (944)
..| +++.|..+|++++...|. |+++.+...|++++...| +...|........+.++ .+....
T Consensus 6 ~~~~~i~~aR~vyer~l~~~P~---------------~~~e~~~~iferal~~~p-s~~LW~~Y~~f~~~~~~~~~~i~~ 69 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLYMS---------------KDYRSLESLFGRCLKKSY-NLDLWMLYIEYVRKVSQKKFKLYE 69 (493)
T ss_dssp ------CCHHHHHHHHHHHHHT---------------TCHHHHHHHHHHHSTTCC-CHHHHHHHHHHHHHHC----CTHH
T ss_pred HcCcchHHHHHHHHHHHHHCCC---------------CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCchHHHHHH
Confidence 456 488899999999988876 889999999999999888 78888888877777663 456677
Q ss_pred HHHHHHHc---CCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH------------
Q 002273 138 SYHKALSA---DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYS------------ 202 (944)
Q Consensus 138 ~~~~al~~---~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~------------ 202 (944)
.|+.++.. ++.+...+...+..+... -..+++.+.+...|++++.....+..-+...-..+.
T Consensus 70 ~fe~al~~vg~d~~s~~iW~~Yi~f~~~~---~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~ 146 (493)
T 2uy1_A 70 VYEFTLGQFENYWDSYGLYKEYIEEEGKI---EDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIV 146 (493)
T ss_dssp HHHHHHHHSTTCTTCHHHHHHHHHHTSSC---SSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHcCCCcccHHHHHHHHHHHHhc---hhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHH
Confidence 88888875 455555433322221100 012457888999999999964333332221111111
Q ss_pred --HcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc--CC-----HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Q 002273 203 --ELMQYDTALGCYEKAALERPM-YAEAYCNMGVIYKNR--GD-----LESAIACYERCLAVSPNFEIAKNNMAIALTDL 272 (944)
Q Consensus 203 --~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~--g~-----~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~ 272 (944)
....+..|...|+.+....+. ....|......-... +- .+.....|++++...|..+..|...+..+..
T Consensus 147 ~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~- 225 (493)
T 2uy1_A 147 GDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIG- 225 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-
T ss_pred HHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-
Confidence 123344555556655543222 344554444432221 11 3456789999999999998888888776544
Q ss_pred hhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 002273 273 GTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF 352 (944)
Q Consensus 273 ~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 352 (944)
.|+.++|...|++++.. |.+...+...+... +. ++....+.+....
T Consensus 226 -----------------------------~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~-e~---~~~~~~l~~~~~~ 271 (493)
T 2uy1_A 226 -----------------------------IGQKEKAKKVVERGIEM-SDGMFLSLYYGLVM-DE---EAVYGDLKRKYSM 271 (493)
T ss_dssp -----------------------------TTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHT-TC---THHHHHHHHHTC-
T ss_pred -----------------------------cCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhc-ch---hHHHHHHHHHHHh
Confidence 45669999999999999 98877666554431 11 1111111111100
Q ss_pred C----------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC
Q 002273 353 N----------PHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG-KMDAAAEMIEKAIAAN 421 (944)
Q Consensus 353 ~----------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-~~~~A~~~l~~al~~~ 421 (944)
. +....+|...+....+.++.+.|...|+++ ...+.....+...|.+....+ +.+.|...|+.+++..
T Consensus 272 ~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~ 350 (493)
T 2uy1_A 272 GEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH 350 (493)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC
T ss_pred hccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC
Confidence 0 112356778888887888899999999999 443345667777777776666 6999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002273 422 PTYAEAYNNLGVLYRDAGSISLAIDAYEQC 451 (944)
Q Consensus 422 p~~~~a~~~la~~~~~~g~~~eA~~~~~~a 451 (944)
|+.+..+...+......|+.+.|...|+++
T Consensus 351 ~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 351 PDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999988888888889999999999999998
No 188
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.27 E-value=8.5e-11 Score=108.30 Aligned_cols=103 Identities=21% Similarity=0.209 Sum_probs=55.3
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHH
Q 002273 360 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFS---QSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY---AEAYNNLGV 433 (944)
Q Consensus 360 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~---~~a~~~la~ 433 (944)
++.+|.++...|++++|+..|+++++..|+++ .+++.+|.++...|++++|+..|+++++.+|++ +.+++.+|.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 34455555555555555555555555555544 455555555555555555555555555555555 455555555
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCChhhh
Q 002273 434 LYRDAGSISLAIDAYEQCLKIDPDSRNAG 462 (944)
Q Consensus 434 ~~~~~g~~~eA~~~~~~al~l~P~~~~a~ 462 (944)
++...|++++|+..|+++++.+|++..+.
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 113 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSDAAR 113 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCChHHH
Confidence 55555555555555555555555554443
No 189
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.25 E-value=6.3e-11 Score=109.18 Aligned_cols=117 Identities=20% Similarity=0.164 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCC---HHHHHHH
Q 002273 324 DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCA---EACNNLGVIYKDRDNLDKAVECYQMALSIKPNF---SQSLNNL 397 (944)
Q Consensus 324 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~---~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l 397 (944)
..++.+|..+...|++++|+..|+++++.+|+++ .+++.+|.++...|++++|+..|+++++..|++ +.+++.+
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 4578899999999999999999999999999987 899999999999999999999999999999999 8999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 002273 398 GVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGS 440 (944)
Q Consensus 398 a~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~ 440 (944)
|.++..+|++++|+..|+++++..|++..+...+..+....++
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~~ 125 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRLG 125 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC--
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999998887776666554444
No 190
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=2.5e-10 Score=107.69 Aligned_cols=114 Identities=21% Similarity=0.131 Sum_probs=107.0
Q ss_pred CCCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHH
Q 002273 42 TLKGFEGKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACA 118 (944)
Q Consensus 42 ~~~~~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 118 (944)
...+.....++.+|..++..|++++|+..|+++++.+|++ ..+++.+|.++...|++++|+..++++++.+|+++.+
T Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 101 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKA 101 (148)
T ss_dssp CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHH
T ss_pred ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHH
Confidence 3456688999999999999999999999999999999987 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhH
Q 002273 119 HTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAEC 155 (944)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 155 (944)
++.+|.++...|++++|+..|+++++.+|++......
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 138 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEA 138 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH
Confidence 9999999999999999999999999999998776433
No 191
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=99.24 E-value=3.1e-11 Score=117.24 Aligned_cols=158 Identities=8% Similarity=0.063 Sum_probs=116.9
Q ss_pred eEEEecCC--CCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhc
Q 002273 683 ITFGSFNN--LAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY 760 (944)
Q Consensus 683 ~~f~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~ 760 (944)
++|+.+++ ..|..+.++++|..+ +..|+.+|+++|.+ .....+.+.+++.|+ +|.| |.++ ..+....|
T Consensus 3 ~~i~~~G~~~~~Kg~~~li~a~~~l-~~~~~~~l~i~G~g----~~~~~~~~~~~~~~~---~v~~-g~~~-~~~~~~~~ 72 (166)
T 3qhp_A 3 FKIAMVGRYSNEKNQSVLIKAVALS-KYKQDIVLLLKGKG----PDEKKIKLLAQKLGV---KAEF-GFVN-SNELLEIL 72 (166)
T ss_dssp EEEEEESCCSTTTTHHHHHHHHHTC-TTGGGEEEEEECCS----TTHHHHHHHHHHHTC---EEEC-CCCC-HHHHHHHH
T ss_pred eEEEEEeccchhcCHHHHHHHHHHh-ccCCCeEEEEEeCC----ccHHHHHHHHHHcCC---eEEE-eecC-HHHHHHHH
Confidence 45666664 489999999999986 55699999999875 346778888888888 8888 9887 78999999
Q ss_pred ccccEEecCCCC-CCcccHHHhhhcCC-cEEec-CCCcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhcCHHHHHH
Q 002273 761 SLMDISLDTFPY-AGTTTTCESLYMGV-PCVTM-AGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALAN 837 (944)
Q Consensus 761 ~~~Di~Ld~~~~-~~~~t~~eal~~gv-Pvvt~-~g~~~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~l~~d~~~~~~ 837 (944)
+.+||++-|..+ +.|.+.+|||++|+ |||+. .+.....-+ ..-|. -+...|.+++.+...++.+|++.+..
T Consensus 73 ~~adv~v~ps~~e~~~~~~~Eama~G~vPvi~~~~~~~~~~~~-----~~~~~-~~~~~~~~~l~~~i~~l~~~~~~~~~ 146 (166)
T 3qhp_A 73 KTCTLYVHAANVESEAIACLEAISVGIVPVIANSPLSATRQFA-----LDERS-LFEPNNAKDLSAKIDWWLENKLERER 146 (166)
T ss_dssp TTCSEEEECCCSCCCCHHHHHHHHTTCCEEEECCTTCGGGGGC-----SSGGG-EECTTCHHHHHHHHHHHHHCHHHHHH
T ss_pred HhCCEEEECCcccCccHHHHHHHhcCCCcEEeeCCCCchhhhc-----cCCce-EEcCCCHHHHHHHHHHHHhCHHHHHH
Confidence 999999988866 77999999999996 99992 222111111 11011 23356999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCChHHHHH
Q 002273 838 LRMSLRDLMSKSPVCDGQNFAL 859 (944)
Q Consensus 838 ~r~~~~~~~~~~~~~~~~~~~~ 859 (944)
+++..++.. +. |+++.++.
T Consensus 147 ~~~~~~~~~-~~--~s~~~~~~ 165 (166)
T 3qhp_A 147 MQNEYAKSA-LN--YTLENSVI 165 (166)
T ss_dssp HHHHHHHHH-HH--HC------
T ss_pred HHHHHHHHH-HH--CChhhhhc
Confidence 999988865 22 67766553
No 192
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.23 E-value=6e-11 Score=109.13 Aligned_cols=114 Identities=18% Similarity=0.227 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCC-------HHHHH
Q 002273 323 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF-------SQSLN 395 (944)
Q Consensus 323 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~ 395 (944)
+..+..+|.++...|++++|+..|+++++.+|.++.++..+|.++...|++++|+.+++++++..|++ ..+++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 34556666666666666666666666666666666666666666666666666666666666665544 55666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 002273 396 NLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRD 437 (944)
Q Consensus 396 ~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~ 437 (944)
.+|.++...|++++|+.+|+++++..| +......++.+...
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 666666666666666666666666665 35555555555443
No 193
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.23 E-value=2.2e-11 Score=113.98 Aligned_cols=94 Identities=18% Similarity=0.215 Sum_probs=64.6
Q ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--
Q 002273 371 DNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGK----------MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDA-- 438 (944)
Q Consensus 371 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~----------~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~-- 438 (944)
+++++|++.++++++++|+++++++++|.++...++ +++|+..|+++++++|++.++++++|.+|..+
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~ 95 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF 95 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcc
Confidence 345555555555555555555555555555555544 45777777777777777777777777777766
Q ss_pred ---------CCHHHHHHHHHHHHhhCCCChhhhhh
Q 002273 439 ---------GSISLAIDAYEQCLKIDPDSRNAGQN 464 (944)
Q Consensus 439 ---------g~~~eA~~~~~~al~l~P~~~~a~~~ 464 (944)
|++++|+++|++|++++|++.....+
T Consensus 96 l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~a 130 (158)
T 1zu2_A 96 LTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKS 130 (158)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 48999999999999999998655444
No 194
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.22 E-value=7.7e-11 Score=130.34 Aligned_cols=125 Identities=18% Similarity=0.199 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHh----------------hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Q 002273 323 ADAMYNLGVAYGEMLKFDMAIVFYELAFH----------------FNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI 386 (944)
Q Consensus 323 ~~~~~~la~~~~~~g~~~~A~~~~~~al~----------------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 386 (944)
...+..+|..+...|++++|+..|+++++ .+|.+..++.++|.++..+|++++|++++++++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 45688999999999999999999999998 66777888999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002273 387 KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDA 447 (944)
Q Consensus 387 ~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~ 447 (944)
+|+++.+++.+|.+|..+|++++|+..|+++++++|++..++..++.++...++++++.+.
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999888888877653
No 195
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.21 E-value=5.5e-11 Score=106.07 Aligned_cols=106 Identities=15% Similarity=0.161 Sum_probs=101.2
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC--CHHHHHH
Q 002273 319 NWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPN--FSQSLNN 396 (944)
Q Consensus 319 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~ 396 (944)
+|++..++..+|.++...|++++|+..++++++.+|.+..++..+|.++...|++++|+++|+++++..|+ +..++..
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 81 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence 57778889999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHHhCCCC
Q 002273 397 LGVVYTVQ-GKMDAAAEMIEKAIAANPTY 424 (944)
Q Consensus 397 la~~~~~~-g~~~~A~~~l~~al~~~p~~ 424 (944)
+|.++... |++++|++++++++...|.+
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 99999999 99999999999999998864
No 196
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.20 E-value=2.7e-10 Score=129.30 Aligned_cols=204 Identities=13% Similarity=0.045 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 002273 193 AYYNLGVVYSELMQYDTALGCYEKAALERPMYA-----------------EAYCNMGVIYKNRGDLESAIACYERCLAVS 255 (944)
Q Consensus 193 ~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----------------~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 255 (944)
+....|..+...|+|++|++.|.++++..+... .++..+|.+|...|++++|++.+++++...
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~ 85 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM 85 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 344455556666666666666666666554421 346778888888888888888888877654
Q ss_pred CCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 002273 256 PNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGE 335 (944)
Q Consensus 256 p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 335 (944)
+........ ..+...++.++..
T Consensus 86 ~~~~~~~~~----------------------------------------------------------~~~~~~l~~~~~~ 107 (434)
T 4b4t_Q 86 MQFAKSKTV----------------------------------------------------------KVLKTLIEKFEQV 107 (434)
T ss_dssp HTSCHHHHH----------------------------------------------------------HHHHHHHHHHCSC
T ss_pred HHccchHHH----------------------------------------------------------HHHHHHHHHHHhC
Confidence 433221110 1123334444455
Q ss_pred cCChHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHH
Q 002273 336 MLKFDMAIVFYELAFHFN------PHCAEACNNLGVIYKDRDNLDKAVECYQMALSI------KPNFSQSLNNLGVVYTV 403 (944)
Q Consensus 336 ~g~~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~ 403 (944)
.|++++|+.++++++... +....++..+|.++...|++++|+.++++++.. .+....++..++.+|..
T Consensus 108 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (434)
T 4b4t_Q 108 PDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHK 187 (434)
T ss_dssp CSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence 555555555555555431 122456666677777777777777777666654 22234567777777777
Q ss_pred cCCHHHHHHHHHHHHHhCC---CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002273 404 QGKMDAAAEMIEKAIAANP---TY----AEAYNNLGVLYRDAGSISLAIDAYEQCLKI 454 (944)
Q Consensus 404 ~g~~~~A~~~l~~al~~~p---~~----~~a~~~la~~~~~~g~~~eA~~~~~~al~l 454 (944)
.|++++|..++++++...+ .. ...+..+|.++...|++++|..+|.++++.
T Consensus 188 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 188 LRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 7777777777777766522 21 345666777777777888888777777764
No 197
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=99.19 E-value=4.1e-11 Score=117.73 Aligned_cols=147 Identities=13% Similarity=0.014 Sum_probs=107.0
Q ss_pred CCCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHH--HcCCCCCcEEEccCcc
Q 002273 676 PALTNGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLE--QLGLESLRVDLLPLIL 751 (944)
Q Consensus 676 ~~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~--~~gi~~~rv~~~~~~~ 751 (944)
..++++..+|+++.+. .|..+.++++|.++ |+.+|+++|.+... ..+++.+. ..|+ .++|.|.|.++
T Consensus 17 ~~~~~~~~~i~~~G~~~~~Kg~~~li~a~~~l----~~~~l~i~G~~~~~----~~l~~~~~~~~~~l-~~~v~~~g~~~ 87 (177)
T 2f9f_A 17 FKFKCYGDFWLSVNRIYPEKRIELQLEVFKKL----QDEKLYIVGWFSKG----DHAERYARKIMKIA-PDNVKFLGSVS 87 (177)
T ss_dssp CCCCCCCSCEEEECCSSGGGTHHHHHHHHHHC----TTSCEEEEBCCCTT----STHHHHHHHHHHHS-CTTEEEEESCC
T ss_pred cccCCCCCEEEEEeccccccCHHHHHHHHHhC----CCcEEEEEecCccH----HHHHHHHHhhhccc-CCcEEEeCCCC
Confidence 3445555556666654 78878888877765 89999999865322 35555666 7788 58999999987
Q ss_pred CcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchh--HHHhhcCCcccc-cCCHHHHHHHHHH
Q 002273 752 LNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGV--SLLTKVGLKHLI-AKNEDEYVQLALQ 827 (944)
Q Consensus 752 ~~~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~--~~l~~~gl~~~v-~~~~~~y~~~a~~ 827 (944)
..+....|+.+|+++-|..+ +.|++.+|||++|+|||+ ++++. .++.. |-..++ ..|.+++++...+
T Consensus 88 -~~e~~~~~~~adi~v~ps~~e~~~~~~~Eama~G~PvI~-------~~~~~~~e~i~~-~~~g~~~~~d~~~l~~~i~~ 158 (177)
T 2f9f_A 88 -EEELIDLYSRCKGLLCTAKDEDFGLTPIEAMASGKPVIA-------VNEGGFKETVIN-EKTGYLVNADVNEIIDAMKK 158 (177)
T ss_dssp -HHHHHHHHHHCSEEEECCSSCCSCHHHHHHHHTTCCEEE-------ESSHHHHHHCCB-TTTEEEECSCHHHHHHHHHH
T ss_pred -HHHHHHHHHhCCEEEeCCCcCCCChHHHHHHHcCCcEEE-------eCCCCHHHHhcC-CCccEEeCCCHHHHHHHHHH
Confidence 57899999999999986644 778999999999999999 55441 11111 333333 6899999999999
Q ss_pred HhcCHHH-HHHHHH
Q 002273 828 LASDVTA-LANLRM 840 (944)
Q Consensus 828 l~~d~~~-~~~~r~ 840 (944)
+.+|++. ++++|+
T Consensus 159 l~~~~~~~~~~~~~ 172 (177)
T 2f9f_A 159 VSKNPDKFKKDCFR 172 (177)
T ss_dssp HHHCTTTTHHHHHH
T ss_pred HHhCHHHHHHHHHH
Confidence 9999875 344443
No 198
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.18 E-value=6.1e-11 Score=136.06 Aligned_cols=128 Identities=14% Similarity=0.101 Sum_probs=116.4
Q ss_pred HHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHH
Q 002273 297 ELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKA 376 (944)
Q Consensus 297 ~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 376 (944)
..+...|++++|++.|+++++.+|++..++..+|.++...|++++|+..++++++++|+++.+++++|.+|..+|++++|
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 34677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHHhCCCC
Q 002273 377 VECYQMALSIKPNFSQSLNNLGVV--YTVQGKMDAAAEMIE-----------KAIAANPTY 424 (944)
Q Consensus 377 ~~~~~~al~~~p~~~~~~~~la~~--~~~~g~~~~A~~~l~-----------~al~~~p~~ 424 (944)
++.|+++++++|++..++..++.+ +...|++++|++.++ ++++..|+.
T Consensus 94 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 94 LRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp HHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence 999999999999999999999998 889999999999999 777777654
No 199
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.17 E-value=1.4e-10 Score=110.97 Aligned_cols=135 Identities=25% Similarity=0.265 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCC------
Q 002273 323 ADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC------AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNF------ 390 (944)
Q Consensus 323 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------ 390 (944)
..++..+|.++...|++++|+.+++++++..+.. ..++..+|.++...|++++|+.++++++++.+..
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 4678899999999999999999999999885432 3588999999999999999999999999875442
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002273 391 SQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP------TYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 457 (944)
Q Consensus 391 ~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p------~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~ 457 (944)
..++.++|.++...|++++|+.+++++++..+ ....++..+|.++...|++++|++++++++++...
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 56889999999999999999999999998732 22568899999999999999999999999987654
No 200
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.17 E-value=2.4e-10 Score=105.03 Aligned_cols=108 Identities=24% Similarity=0.306 Sum_probs=100.4
Q ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHH
Q 002273 356 CAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY-------AEAY 428 (944)
Q Consensus 356 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~-------~~a~ 428 (944)
.+..++.+|.++...|++++|+.+|+++++..|.++.++..+|.++...|++++|+.+++++++..|++ ..++
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 357889999999999999999999999999999999999999999999999999999999999998877 8999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhh
Q 002273 429 NNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQN 464 (944)
Q Consensus 429 ~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~ 464 (944)
+.+|.++...|++++|+++|++++++.|+ ......
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 117 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKK 117 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCC-HHHHHH
Confidence 99999999999999999999999999994 554443
No 201
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.17 E-value=7.7e-11 Score=110.29 Aligned_cols=100 Identities=19% Similarity=0.174 Sum_probs=64.5
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Q 002273 302 EGDINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQ 381 (944)
Q Consensus 302 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 381 (944)
.+.+++|++.++++++.+|+++++++++|.++...++++.+...++ .+++|+..|+
T Consensus 15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~------------------------~~~eAi~~le 70 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQ------------------------MIQEAITKFE 70 (158)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHH------------------------HHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHh------------------------HHHHHHHHHH
Confidence 3445555555555555555555555555555555554432222111 1457777777
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCH
Q 002273 382 MALSIKPNFSQSLNNLGVVYTVQG-----------KMDAAAEMIEKAIAANPTYA 425 (944)
Q Consensus 382 ~al~~~p~~~~~~~~la~~~~~~g-----------~~~~A~~~l~~al~~~p~~~ 425 (944)
++++++|++..+++++|.+|..+| ++++|+++|++|++++|++.
T Consensus 71 ~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 71 EALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 777777777777777777777664 78888888888888888764
No 202
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.17 E-value=4.5e-11 Score=108.42 Aligned_cols=93 Identities=12% Similarity=0.191 Sum_probs=63.1
Q ss_pred CCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002273 370 RDNLDKAVECYQMALSI---KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAID 446 (944)
Q Consensus 370 ~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~ 446 (944)
.|++++|+.+|++++++ +|++..++.++|.++..+|++++|+.+|+++++.+|+++.+++.+|.++...|++++|+.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 46666777777777776 466666777777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHhhCCCChhhh
Q 002273 447 AYEQCLKIDPDSRNAG 462 (944)
Q Consensus 447 ~~~~al~l~P~~~~a~ 462 (944)
.|+++++..|+++...
T Consensus 83 ~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 83 LLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHCCCHHHH
T ss_pred HHHHHHHhCCCcHHHH
Confidence 7777777777666543
No 203
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=99.17 E-value=2.5e-10 Score=131.94 Aligned_cols=169 Identities=12% Similarity=0.003 Sum_probs=130.2
Q ss_pred CCeEEEecCC--CCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEE-EccCccCcHHHH
Q 002273 681 GFITFGSFNN--LAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVD-LLPLILLNHDHM 757 (944)
Q Consensus 681 ~~~~f~~~~~--~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~-~~~~~~~~~~~~ 757 (944)
+.++++++++ ..|..+.++++|..+.. ++.+|+|+|.+ .+..++.+++...++| ++|+ |.|. + ..+..
T Consensus 291 ~~~~i~~vGrl~~~Kg~~~li~a~~~l~~--~~~~l~ivG~g--~~~~~~~l~~~~~~~~---~~v~~~~g~-~-~~~~~ 361 (485)
T 2qzs_A 291 KVPLFAVVSRLTSQKGLDLVLEALPGLLE--QGGQLALLGAG--DPVLQEGFLAAAAEYP---GQVGVQIGY-H-EAFSH 361 (485)
T ss_dssp TSCEEEEEEEESGGGCHHHHHHHHHHHHH--TTCEEEEEEEE--CHHHHHHHHHHHHHST---TTEEEEESC-C-HHHHH
T ss_pred CCeEEEEeccCccccCHHHHHHHHHHHhh--CCcEEEEEeCC--chHHHHHHHHHHHhCC---CcEEEeCCC-C-HHHHH
Confidence 5556666664 58999999999999876 58999999865 2346778888888875 7886 7777 3 45557
Q ss_pred HhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhHHHhh--cC---------Cccccc--CCHHHHHH
Q 002273 758 QAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTK--VG---------LKHLIA--KNEDEYVQ 823 (944)
Q Consensus 758 ~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~--~g---------l~~~v~--~~~~~y~~ 823 (944)
..|+.+||++-|+.+ +.|++.+|||++|+|||+ +++|+ +-.. -| -..++. .|.+++.+
T Consensus 362 ~~~~~adv~v~pS~~E~~g~~~lEAma~G~PvI~-------s~~gg-~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~ 433 (485)
T 2qzs_A 362 RIMGGADVILVPSRFEPCGLTQLYGLKYGTLPLV-------RRTGG-LADTVSDCSLENLADGVASGFVFEDSNAWSLLR 433 (485)
T ss_dssp HHHHHCSEEEECCSCCSSCSHHHHHHHHTCEEEE-------ESSHH-HHHHCCBCCHHHHHTTCCCBEEECSSSHHHHHH
T ss_pred HHHHhCCEEEECCccCCCcHHHHHHHHCCCCEEE-------CCCCC-ccceeccCccccccccccceEEECCCCHHHHHH
Confidence 889999999888866 779999999999999999 66642 1111 12 334443 38999999
Q ss_pred HHHHHh---cCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHH
Q 002273 824 LALQLA---SDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHR 871 (944)
Q Consensus 824 ~a~~l~---~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 871 (944)
...++. .|++.++++++..++ ..|+++.+++.++++|+++...
T Consensus 434 ~i~~ll~~~~~~~~~~~~~~~~~~-----~~fs~~~~~~~~~~ly~~~~~~ 479 (485)
T 2qzs_A 434 AIRRAFVLWSRPSLWRFVQRQAMA-----MDFSWQVAAKSYRELYYRLKLE 479 (485)
T ss_dssp HHHHHHHHHTSHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHh-----hcCCHHHHHHHHHHHHHHhhhh
Confidence 999998 799988888887753 4599999999999999988653
No 204
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.16 E-value=4.5e-11 Score=108.41 Aligned_cols=95 Identities=19% Similarity=0.171 Sum_probs=78.2
Q ss_pred HcCChHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q 002273 335 EMLKFDMAIVFYELAFHF---NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAA 411 (944)
Q Consensus 335 ~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~ 411 (944)
..|++++|+..|+++++. +|++..++..+|.++...|++++|+.+|+++++.+|+++.+++++|.++...|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 357888888888888888 57778888889999999999999999999999999988888899999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHH
Q 002273 412 EMIEKAIAANPTYAEAYN 429 (944)
Q Consensus 412 ~~l~~al~~~p~~~~a~~ 429 (944)
..++++++..|+++.+..
T Consensus 82 ~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHhCCCcHHHHH
Confidence 999999888888876543
No 205
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=99.15 E-value=6.9e-10 Score=122.89 Aligned_cols=318 Identities=13% Similarity=0.005 Sum_probs=178.6
Q ss_pred cEEEeecCCCccCcHHHHHHhhhhhccCCcEEEEEEeccccCChhhHHHHHHHhhhCCceEeccC--C------------
Q 002273 511 LVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYG--I------------ 576 (944)
Q Consensus 511 lriGy~S~d~~~h~v~~~~~~~l~~~d~~~fev~~y~~~~~~d~~t~~~~~~~~~~~~~~~~~~~--~------------ 576 (944)
.||.+++.....|-. ....+........++|.+++...... ...+. ...-.+..+.. +
T Consensus 7 mkIl~~~~~~gG~~~--~~~~la~~L~~~G~~V~v~~~~~~~~--~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~ 78 (364)
T 1f0k_A 7 KRLMVMAGGTGGHVF--PGLAVAHHLMAQGWQVRWLGTADRME--ADLVP----KHGIEIDFIRISGLRGKGIKALIAAP 78 (364)
T ss_dssp CEEEEECCSSHHHHH--HHHHHHHHHHTTTCEEEEEECTTSTH--HHHGG----GGTCEEEECCCCCCTTCCHHHHHTCH
T ss_pred cEEEEEeCCCccchh--HHHHHHHHHHHcCCEEEEEecCCcch--hhhcc----ccCCceEEecCCccCcCccHHHHHHH
Confidence 678888866543332 22234445555678898887643211 11111 11111222211 0
Q ss_pred -----CHHHHHHHhHhCCccEEEecCCCCCCCchhhhc--cCCcceeeecccCC-CC---CCCCCccEEEecCCCCCccc
Q 002273 577 -----DEKKVAAMVREDKIDILVELTGHTANNKLGMMA--CQPAPVQVTWIGYP-NT---TGLPTIDYRITDSLADPPET 645 (944)
Q Consensus 577 -----~~~~~a~~i~~d~idilvdl~g~t~~~~~~~~a--~r~ApvQ~~~~G~p-~t---~g~~~~Dy~i~d~~~~p~~~ 645 (944)
.-.++.+.|+..++||++--.+.. +-...++ ..-.|+=++..+.. +. .-....|.+++.. + ..
T Consensus 79 ~~~~~~~~~l~~~l~~~~pDvv~~~~~~~--~~~~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~~~d~v~~~~---~-~~ 152 (364)
T 1f0k_A 79 LRIFNAWRQARAIMKAYKPDVVLGMGGYV--SGPGGLAAWSLGIPVVLHEQNGIAGLTNKWLAKIATKVMQAF---P-GA 152 (364)
T ss_dssp HHHHHHHHHHHHHHHHHCCSEEEECSSTT--HHHHHHHHHHTTCCEEEEECSSSCCHHHHHHTTTCSEEEESS---T-TS
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeCCcC--chHHHHHHHHcCCCEEEEecCCCCcHHHHHHHHhCCEEEecC---h-hh
Confidence 123567788889999997643321 1122222 22356555543321 10 0123467766531 1 00
Q ss_pred ccccccceEEcCCCcc--ccCCCCCCCCCCCCCCCCC-CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCce-EEEecC
Q 002273 646 KQKHVEELIRLPECFL--CYTPSPEAGPVCPTPALTN-GFITFGSFNNL--AKITPKVLQVWARILCAVPNSR-LVVKCK 719 (944)
Q Consensus 646 ~~~~~e~~~~lp~~~~--~~~~~~~~~~~~~~~~~~~-~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~-l~~~~~ 719 (944)
+. ++..+|+..- .|.+. ..+...+++. +.+++.+..+. .|..+.+++++.++.. +.+ +++.|.
T Consensus 153 ---~~-~~~~i~n~v~~~~~~~~----~~~~~~~~~~~~~~il~~~g~~~~~k~~~~li~a~~~l~~---~~~~l~i~G~ 221 (364)
T 1f0k_A 153 ---FP-NAEVVGNPVRTDVLALP----LPQQRLAGREGPVRVLVVGGSQGARILNQTMPQVAAKLGD---SVTIWHQSGK 221 (364)
T ss_dssp ---SS-SCEECCCCCCHHHHTSC----CHHHHHTTCCSSEEEEEECTTTCCHHHHHHHHHHHHHHGG---GEEEEEECCT
T ss_pred ---cC-CceEeCCccchhhcccc----hhhhhcccCCCCcEEEEEcCchHhHHHHHHHHHHHHHhcC---CcEEEEEcCC
Confidence 22 3334443210 01110 0001112333 34445555444 5676777788887644 566 455665
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccc-
Q 002273 720 PFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAH- 798 (944)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~- 798 (944)
+. .+.+.+.++++|+ ++|.|.|.+ .+....|..+|+++-|. ||+|++|||++|+|||+.+-.....
T Consensus 222 ~~-----~~~l~~~~~~~~~--~~v~~~g~~---~~~~~~~~~ad~~v~~s---g~~~~~EAma~G~Pvi~~~~~g~~~~ 288 (364)
T 1f0k_A 222 GS-----QQSVEQAYAEAGQ--PQHKVTEFI---DDMAAAYAWADVVVCRS---GALTVSEIAAAGLPALFVPFQHKDRQ 288 (364)
T ss_dssp TC-----HHHHHHHHHHTTC--TTSEEESCC---SCHHHHHHHCSEEEECC---CHHHHHHHHHHTCCEEECCCCCTTCH
T ss_pred ch-----HHHHHHHHhhcCC--CceEEecch---hhHHHHHHhCCEEEECC---chHHHHHHHHhCCCEEEeeCCCCchh
Confidence 41 3677888888898 479999987 35667778899999774 6899999999999999954221110
Q ss_pred -cchhHHHhhcCCcccccC-C--HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHH
Q 002273 799 -NVGVSLLTKVGLKHLIAK-N--EDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHR 871 (944)
Q Consensus 799 -r~~~~~l~~~gl~~~v~~-~--~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 871 (944)
...+..+...|..-++.. | .+++.+...+| |++.++++++..++.. ..|+++.+++.+|+.|+++=..
T Consensus 289 q~~~~~~~~~~g~g~~~~~~d~~~~~la~~i~~l--~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~y~~~~~~ 360 (364)
T 1f0k_A 289 QYWNALPLEKAGAAKIIEQPQLSVDAVANTLAGW--SRETLLTMAERARAAS---IPDATERVANEVSRVARALEHH 360 (364)
T ss_dssp HHHHHHHHHHTTSEEECCGGGCCHHHHHHHHHTC--CHHHHHHHHHHHHHTC---CTTHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHhCCcEEEeccccCCHHHHHHHHHhc--CHHHHHHHHHHHHHhh---ccCHHHHHHHHHHHHHHHHHhh
Confidence 011334555576334432 3 67777777666 9999999999888763 3589999999999999876443
No 206
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=99.14 E-value=3.7e-10 Score=130.51 Aligned_cols=166 Identities=14% Similarity=0.000 Sum_probs=128.8
Q ss_pred CeEEEecCCC--CcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEE-EccCccCcHHHHH
Q 002273 682 FITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVD-LLPLILLNHDHMQ 758 (944)
Q Consensus 682 ~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~-~~~~~~~~~~~~~ 758 (944)
.+++++++++ .|..+.++++|.++.. ++.+|+++|.+ .+..++.+++...++| ++|+ |.|. + .++...
T Consensus 291 ~~~i~~vGrl~~~Kg~~~li~a~~~l~~--~~~~l~ivG~g--~~~~~~~l~~~~~~~~---~~v~~~~g~-~-~~~~~~ 361 (485)
T 1rzu_A 291 SPLFCVISRLTWQKGIDLMAEAVDEIVS--LGGRLVVLGAG--DVALEGALLAAASRHH---GRVGVAIGY-N-EPLSHL 361 (485)
T ss_dssp SCEEEEESCBSTTTTHHHHHTTHHHHHH--TTCEEEEEECB--CHHHHHHHHHHHHHTT---TTEEEEESC-C-HHHHHH
T ss_pred CeEEEEEccCccccCHHHHHHHHHHHHh--cCceEEEEeCC--chHHHHHHHHHHHhCC---CcEEEecCC-C-HHHHHH
Confidence 4467777754 7999999999999876 58999999875 3346778888888875 7887 7777 3 455568
Q ss_pred hcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhHHHhhc--C---------Cccccc--CCHHHHHHH
Q 002273 759 AYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKV--G---------LKHLIA--KNEDEYVQL 824 (944)
Q Consensus 759 ~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~--g---------l~~~v~--~~~~~y~~~ 824 (944)
.|..+||++-|+.+ +.|.+.+|||++|+|||+ +++|+ +-..+ | -..++. .|.+++.+.
T Consensus 362 ~~~~adv~v~pS~~E~~~~~~lEAma~G~PvI~-------s~~gg-~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~ 433 (485)
T 1rzu_A 362 MQAGCDAIIIPSRFEPCGLTQLYALRYGCIPVV-------ARTGG-LADTVIDANHAALASKAATGVQFSPVTLDGLKQA 433 (485)
T ss_dssp HHHHCSEEEECCSCCSSCSHHHHHHHHTCEEEE-------ESSHH-HHHHCCBCCHHHHHTTCCCBEEESSCSHHHHHHH
T ss_pred HHhcCCEEEECcccCCCCHHHHHHHHCCCCEEE-------eCCCC-hhheecccccccccccCCcceEeCCCCHHHHHHH
Confidence 89999999888865 779999999999999999 66642 11111 2 334443 488999999
Q ss_pred HHHHh---cCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 002273 825 ALQLA---SDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMW 869 (944)
Q Consensus 825 a~~l~---~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 869 (944)
..++. .|++.+.++++..++ ..|+++.+++.++++|+++.
T Consensus 434 i~~ll~~~~~~~~~~~~~~~~~~-----~~fs~~~~~~~~~~~y~~~~ 476 (485)
T 1rzu_A 434 IRRTVRYYHDPKLWTQMQKLGMK-----SDVSWEKSAGLYAALYSQLI 476 (485)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHT-----CCCBHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhCCHHHHHHHHHHHHH-----HhCChHHHHHHHHHHHHHhh
Confidence 99988 899888888877653 46999999999999998763
No 207
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.13 E-value=6e-11 Score=129.79 Aligned_cols=155 Identities=15% Similarity=0.093 Sum_probs=71.7
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (944)
.+..+..+|..++..|+|++|+..|+++++..|++.. +...+++.++...+. ..+++++|.+|
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~--------~~~~~~~~~~~~~l~---------~~~~~nla~~~ 240 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM--------FQLYGKYQDMALAVK---------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH--------HTCCHHHHHHHHHHH---------THHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh--------hhhcccHHHHHHHHH---------HHHHHHHHHHH
Confidence 4566778888888888888888888888888876542 111222233222221 12556666666
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHH-HHHcC
Q 002273 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVV-YSELM 205 (944)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~-~~~~g 205 (944)
..+|++++|+..|+++++++|++..+ ++.+|.++...|++++|+..|+++++++|++..++..++.+ ....+
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~~a-------~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~ 313 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNPKA-------LFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKA 313 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCHHH-------HHHHHHHHHTTTCHHHHHHHHHHTTC---------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence 66666666666666666666665443 55555666666666666666666666666666666666665 33344
Q ss_pred CHHHHHHHHHHHHHhCCCCH
Q 002273 206 QYDTALGCYEKAALERPMYA 225 (944)
Q Consensus 206 ~~~~A~~~~~~al~~~p~~~ 225 (944)
..+++...|.+++...|.+.
T Consensus 314 ~~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 314 LYQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHhhCCCCCCC
Confidence 55666666666666666543
No 208
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=99.12 E-value=1.4e-10 Score=128.86 Aligned_cols=171 Identities=12% Similarity=0.084 Sum_probs=131.1
Q ss_pred CCCCCCeEEEecCCC--CcCCHHHHHHHHHHHhH-cCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCc
Q 002273 677 ALTNGFITFGSFNNL--AKITPKVLQVWARILCA-VPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLN 753 (944)
Q Consensus 677 ~~~~~~~~f~~~~~~--~K~~~~~~~~~~~il~~-~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~ 753 (944)
+++++.++++++++. .|..+.++++|.++... .|+.+|+++|.+. .+.+.+.++++|+ .++|.|+|. .
T Consensus 191 ~~~~~~~~i~~~G~~~~~K~~~~li~a~~~l~~~~~~~~~l~i~G~g~-----~~~~~~~~~~~~~-~~~v~~~g~---~ 261 (374)
T 2iw1_A 191 GIKEQQNLLLQVGSDFGRKGVDRSIEALASLPESLRHNTLLFVVGQDK-----PRKFEALAEKLGV-RSNVHFFSG---R 261 (374)
T ss_dssp TCCTTCEEEEEECSCTTTTTHHHHHHHHHTSCHHHHHTEEEEEESSSC-----CHHHHHHHHHHTC-GGGEEEESC---C
T ss_pred CCCCCCeEEEEeccchhhcCHHHHHHHHHHhHhccCCceEEEEEcCCC-----HHHHHHHHHHcCC-CCcEEECCC---c
Confidence 455666777777754 78899999999988777 5899999998752 2567777888898 589999997 3
Q ss_pred HHHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccch--hHHHhhcCCccccc---CCHHHHHHHHHH
Q 002273 754 HDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVG--VSLLTKVGLKHLIA---KNEDEYVQLALQ 827 (944)
Q Consensus 754 ~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~--~~~l~~~gl~~~v~---~~~~~y~~~a~~ 827 (944)
.+....|..+|+++-|..+ +.|++.+|||++|+|||+ ++++ ..++.. |-..++. .|.+++++...+
T Consensus 262 ~~~~~~~~~ad~~v~ps~~e~~~~~~~Ea~a~G~Pvi~-------~~~~~~~e~i~~-~~~g~~~~~~~~~~~l~~~i~~ 333 (374)
T 2iw1_A 262 NDVSELMAAADLLLHPAYQEAAGIVLLEAITAGLPVLT-------TAVCGYAHYIAD-ANCGTVIAEPFSQEQLNEVLRK 333 (374)
T ss_dssp SCHHHHHHHCSEEEECCSCCSSCHHHHHHHHHTCCEEE-------ETTSTTTHHHHH-HTCEEEECSSCCHHHHHHHHHH
T ss_pred ccHHHHHHhcCEEEeccccCCcccHHHHHHHCCCCEEE-------ecCCCchhhhcc-CCceEEeCCCCCHHHHHHHHHH
Confidence 5678888999999888765 779999999999999999 4443 122322 2223333 399999999999
Q ss_pred HhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 002273 828 LASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 867 (944)
Q Consensus 828 l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 867 (944)
+.+|++.++++++..++.... +++..+++.+++.++.
T Consensus 334 l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~ 370 (374)
T 2iw1_A 334 ALTQSPLRMAWAENARHYADT---QDLYSLPEKAADIITG 370 (374)
T ss_dssp HHHCHHHHHHHHHHHHHHHHH---SCCSCHHHHHHHHHHC
T ss_pred HHcChHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHH
Confidence 999999999999999987653 3566667777666653
No 209
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.09 E-value=8e-10 Score=105.62 Aligned_cols=140 Identities=20% Similarity=0.256 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC------
Q 002273 117 CAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY------ 190 (944)
Q Consensus 117 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~------ 190 (944)
.++..+|.++...|++++|+..++++++..+.... ....+.++..+|.++...|++++|+..++++++..+..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD-KAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 45667777777777777777777777766543222 23345567777888888888888888888877764332
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 002273 191 APAYYNLGVVYSELMQYDTALGCYEKAALERP------MYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPN 257 (944)
Q Consensus 191 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 257 (944)
..++..+|.++...|++++|+.+++++++..+ ....++..+|.++...|++++|+..+++++++...
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 55778888888889999999988888887532 12457788899999999999999999988876543
No 210
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.08 E-value=1.6e-09 Score=119.72 Aligned_cols=126 Identities=13% Similarity=0.202 Sum_probs=115.9
Q ss_pred hhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHh----------------hCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 002273 150 KPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK----------------IDPHYAPAYYNLGVVYSELMQYDTALGC 213 (944)
Q Consensus 150 ~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~----------------~~p~~~~~~~~la~~~~~~g~~~~A~~~ 213 (944)
.......+..+..+|..+...|++++|+..|+++++ .+|.+..++.++|.+|..+|++++|+.+
T Consensus 216 ~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~ 295 (370)
T 1ihg_A 216 VDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDS 295 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 344445566789999999999999999999999998 7778889999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhh
Q 002273 214 YEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTK 275 (944)
Q Consensus 214 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~ 275 (944)
++++++.+|++..+++.+|.+|..+|++++|+..|+++++++|++..++..++.++..+++.
T Consensus 296 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~ 357 (370)
T 1ihg_A 296 CLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQ 357 (370)
T ss_dssp HHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999888777654
No 211
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=99.05 E-value=4.7e-10 Score=124.25 Aligned_cols=246 Identities=16% Similarity=0.103 Sum_probs=147.9
Q ss_pred HHHHHHHhHhCCccEEEecCCCCCCCchhhhccCCcceeeecccCCCC-----CCCCCccEEEecCCCCCcccccc-ccc
Q 002273 578 EKKVAAMVREDKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNT-----TGLPTIDYRITDSLADPPETKQK-HVE 651 (944)
Q Consensus 578 ~~~~a~~i~~d~idilvdl~g~t~~~~~~~~a~r~ApvQ~~~~G~p~t-----~g~~~~Dy~i~d~~~~p~~~~~~-~~e 651 (944)
...+.+.|+..++||++-...+.-.+ +...+.+ |+=+. .+.... .-+...|.+++-.-.+-...... ..
T Consensus 100 ~~~l~~~l~~~~pDiv~~~~~~~~~~-~~~~~~~--p~~~~-~~~~~~~~~~~~~~~~~d~ii~~S~~~~~~l~~~g~~- 174 (374)
T 2xci_A 100 PFSVKRFEELSKPKALIVVEREFWPS-LIIFTKV--PKILV-NAYAKGSLIEKILSKKFDLIIMRTQEDVEKFKTFGAK- 174 (374)
T ss_dssp HHHHHHHHHHHCCSEEEEESCCCCHH-HHHHCCS--CEEEE-EECCCCCHHHHHHHTTCSEEEESCHHHHHHHHTTTCC-
T ss_pred HHHHHHHHHHhCCCEEEEECccCcHH-HHHHHhC--CEEEE-EeecCchHHHHHHHHhCCEEEECCHHHHHHHHHcCCC-
Confidence 46788899999999998432221111 1111223 65322 122111 01245677664211000000111 22
Q ss_pred ceEEcCCCccccCCCCCCCCCCCCCCCCCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHH
Q 002273 652 ELIRLPECFLCYTPSPEAGPVCPTPALTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFL 731 (944)
Q Consensus 652 ~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~ 731 (944)
++..+|+. .|.+.... .. .+..-.+++++ +..|-.+.++++|.++.+..|+.+|+|+|.+ +...+.++
T Consensus 175 ki~vi~n~--~f~~~~~~---~~--~l~~~vi~~~~--~~~k~~~~ll~A~~~l~~~~p~~~lvivG~g---~~~~~~l~ 242 (374)
T 2xci_A 175 RVFSCGNL--KFICQKGK---GI--KLKGEFIVAGS--IHTGEVEIILKAFKEIKKTYSSLKLILVPRH---IENAKIFE 242 (374)
T ss_dssp SEEECCCG--GGCCCCCS---CC--CCSSCEEEEEE--ECGGGHHHHHHHHHHHHTTCTTCEEEEEESS---GGGHHHHH
T ss_pred eEEEcCCC--ccCCCcCh---hh--hhcCCEEEEEe--CCCchHHHHHHHHHHHHhhCCCcEEEEECCC---HHHHHHHH
Confidence 67777764 24432111 11 12222234444 4568788999999999999999999999864 12235788
Q ss_pred HHHHHcCCCC-------CcEEEccCccCcHHHHHhcccccEEecCCCC--CCcccHHHhhhcCCcEEecCC-Ccccccch
Q 002273 732 STLEQLGLES-------LRVDLLPLILLNHDHMQAYSLMDISLDTFPY--AGTTTTCESLYMGVPCVTMAG-SVHAHNVG 801 (944)
Q Consensus 732 ~~~~~~gi~~-------~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~--~~~~t~~eal~~gvPvvt~~g-~~~~~r~~ 801 (944)
+.+++.|+.. ++|.|.+.. .+....|+.+||++-+..+ .||.+.+|||+||+|||+-+. ..+.. .
T Consensus 243 ~~~~~~gl~~~~~~~~~~~v~~~~~~---~dl~~~y~~aDv~vl~ss~~e~gg~~~lEAmA~G~PVI~~~~~~~~~e--~ 317 (374)
T 2xci_A 243 KKARDFGFKTSFFENLEGDVILVDRF---GILKELYPVGKIAIVGGTFVNIGGHNLLEPTCWGIPVIYGPYTHKVND--L 317 (374)
T ss_dssp HHHHHTTCCEEETTCCCSSEEECCSS---SCHHHHGGGEEEEEECSSSSSSCCCCCHHHHTTTCCEEECSCCTTSHH--H
T ss_pred HHHHHCCCceEEecCCCCcEEEECCH---HHHHHHHHhCCEEEECCcccCCCCcCHHHHHHhCCCEEECCCccChHH--H
Confidence 8889999852 478887753 5678889999996443322 568999999999999997110 11111 0
Q ss_pred hHHHhhcCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Q 002273 802 VSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMS 847 (944)
Q Consensus 802 ~~~l~~~gl~~~v~~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~ 847 (944)
...+..-|.- +.+.|.+++.+...+|.+| +.+++|+++.|+.+.
T Consensus 318 ~~~~~~~G~l-~~~~d~~~La~ai~~ll~d-~~r~~mg~~ar~~~~ 361 (374)
T 2xci_A 318 KEFLEKEGAG-FEVKNETELVTKLTELLSV-KKEIKVEEKSREIKG 361 (374)
T ss_dssp HHHHHHTTCE-EECCSHHHHHHHHHHHHHS-CCCCCHHHHHHHHHH
T ss_pred HHHHHHCCCE-EEeCCHHHHHHHHHHHHhH-HHHHHHHHHHHHHHH
Confidence 1111122331 2357999999999999999 999999998888764
No 212
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A*
Probab=99.00 E-value=7.4e-10 Score=128.16 Aligned_cols=162 Identities=11% Similarity=0.097 Sum_probs=117.9
Q ss_pred CCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHH
Q 002273 680 NGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 757 (944)
Q Consensus 680 ~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~ 757 (944)
.+.++|+++.|+ .|..+.+++++.++++. +.+|+++|.+ .......++...... .++|.|.+... ..+..
T Consensus 325 ~~~p~i~~vgRl~~~Kg~~~li~a~~~l~~~--~~~l~l~G~G--~~~~~~~~~~~~~~~---~~~v~~~~~~~-~~~~~ 396 (536)
T 3vue_A 325 RKIPLIAFIGRLEEQKGPDVMAAAIPELMQE--DVQIVLLGTG--KKKFEKLLKSMEEKY---PGKVRAVVKFN-APLAH 396 (536)
T ss_dssp TTSCEEEEECCBSGGGCHHHHHHHHHHHTTS--SCEEEEECCB--CHHHHHHHHHHHHHS---TTTEEEECSCC-HHHHH
T ss_pred CCCcEEEEEeeccccCChHHHHHHHHHhHhh--CCeEEEEecc--CchHHHHHHHHHhhc---CCceEEEEecc-HHHHH
Confidence 456778888876 89999999999999874 5677777654 334455555544444 47898888765 56666
Q ss_pred HhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccccC--------------------
Q 002273 758 QAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK-------------------- 816 (944)
Q Consensus 758 ~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~-------------------- 816 (944)
..|+.+||+|-|+-| +.|.+.+|||++|+|||+ +++| |++|.|.+
T Consensus 397 ~~~~~aD~~v~PS~~E~fgl~~lEAma~G~PvI~-------s~~g-------G~~e~V~dg~~G~~~~~~~~~g~l~~~~ 462 (536)
T 3vue_A 397 LIMAGADVLAVPSRFEPCGLIQLQGMRYGTPCAC-------ASTG-------GLVDTVIEGKTGFHMGRLSVDCKVVEPS 462 (536)
T ss_dssp HHHHHCSEEEECCSCCSSCSHHHHHHHTTCCEEE-------CSCT-------HHHHHCCBTTTEEECCCCCSCTTCCCHH
T ss_pred HHHHhhheeecccccCCCCHHHHHHHHcCCCEEE-------cCCC-------CchheeeCCCCccccccCCCceeEECCC
Confidence 788999999988866 889999999999999999 8888 77666532
Q ss_pred CHHHHHH---HHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 002273 817 NEDEYVQ---LALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMW 869 (944)
Q Consensus 817 ~~~~y~~---~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 869 (944)
|.+++.+ +|+.+..++. ++++ .|..|.+ -|+|++.++++|++|+++.
T Consensus 463 d~~~la~ai~ral~~~~~~~-~~~~---~~~am~~--~fSW~~~A~~y~~ly~~L~ 512 (536)
T 3vue_A 463 DVKKVAATLKRAIKVVGTPA-YEEM---VRNCMNQ--DLSWKGPAKNWENVLLGLG 512 (536)
T ss_dssp HHHHHHHHHHHHHHHTTSHH-HHHH---HHHHHHS--CCSSHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHhcCcHH-HHHH---HHHHHHh--cCCHHHHHHHHHHHHHHhh
Confidence 3455544 3455556653 3333 3344543 4999999999999999873
No 213
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.95 E-value=3.8e-09 Score=95.13 Aligned_cols=81 Identities=22% Similarity=0.254 Sum_probs=44.1
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 002273 342 AIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN 421 (944)
Q Consensus 342 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~ 421 (944)
|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|++++++.
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 83 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAA 83 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 44555555555555555555555555555555555555555555555555555555555555555555555555555544
Q ss_pred C
Q 002273 422 P 422 (944)
Q Consensus 422 p 422 (944)
|
T Consensus 84 ~ 84 (115)
T 2kat_A 84 Q 84 (115)
T ss_dssp H
T ss_pred c
Confidence 4
No 214
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.95 E-value=4.9e-10 Score=99.97 Aligned_cols=94 Identities=16% Similarity=0.247 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHH
Q 002273 357 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY------AEAYNN 430 (944)
Q Consensus 357 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~------~~a~~~ 430 (944)
...+..+|.++...|++++|++.|+++++++|+++.++.++|.++..+|++++|+..++++++++|++ ..+++.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 45667777777777777777777777777777777777777777777777777777777777777777 777777
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q 002273 431 LGVLYRDAGSISLAIDAYEQ 450 (944)
Q Consensus 431 la~~~~~~g~~~eA~~~~~~ 450 (944)
+|.++...|++++|+..+++
T Consensus 84 ~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHhHhhhHhHHHH
Confidence 77777777776666655443
No 215
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.90 E-value=1.1e-08 Score=87.35 Aligned_cols=83 Identities=42% Similarity=0.596 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002273 357 AEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYR 436 (944)
Q Consensus 357 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~ 436 (944)
..+++.+|.++...|++++|+.+|+++++.+|++..++..+|.++...|++++|+.+++++++.+|++..++..+|.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 45666666666666666666666666666666666666666666666666666666666666666666666666666665
Q ss_pred HcC
Q 002273 437 DAG 439 (944)
Q Consensus 437 ~~g 439 (944)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 543
No 216
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.90 E-value=6.6e-09 Score=93.52 Aligned_cols=87 Identities=23% Similarity=0.270 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002273 374 DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 453 (944)
Q Consensus 374 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~ 453 (944)
++|+..|+++++.+|+++.+++.+|.++...|++++|+.+|+++++.+|++..+++.+|.+|...|++++|+..|+++++
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCChh
Q 002273 454 IDPDSRN 460 (944)
Q Consensus 454 l~P~~~~ 460 (944)
++|++.+
T Consensus 82 ~~~~~~~ 88 (115)
T 2kat_A 82 AAQSRGD 88 (115)
T ss_dssp HHHHHTC
T ss_pred hcccccc
Confidence 9886543
No 217
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A*
Probab=98.90 E-value=4.1e-08 Score=110.59 Aligned_cols=167 Identities=14% Similarity=0.097 Sum_probs=117.1
Q ss_pred CCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHH
Q 002273 679 TNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 758 (944)
Q Consensus 679 ~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 758 (944)
+++.+++.++.+..+-....+....+.+...+-..+++.+++. .++.+. ++ +++|.|.+.++ +..
T Consensus 240 ~~~~~vlv~~G~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~----~~~~l~------~~-~~~v~~~~~~~----~~~ 304 (412)
T 3otg_A 240 TARPLVYLTLGTSSGGTVEVLRAAIDGLAGLDADVLVASGPSL----DVSGLG------EV-PANVRLESWVP----QAA 304 (412)
T ss_dssp TTSCEEEEECTTTTCSCHHHHHHHHHHHHTSSSEEEEECCSSC----CCTTCC------CC-CTTEEEESCCC----HHH
T ss_pred CCCCEEEEEcCCCCcCcHHHHHHHHHHHHcCCCEEEEEECCCC----Chhhhc------cC-CCcEEEeCCCC----HHH
Confidence 4566778888877666667777667777766544444444331 111111 23 58999999873 456
Q ss_pred hcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccccC---CHHHHHHHHHHHhcCHHHH
Q 002273 759 AYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQLASDVTAL 835 (944)
Q Consensus 759 ~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~---~~~~y~~~a~~l~~d~~~~ 835 (944)
.+..||+++-. +|++|++|||++|+|||+.+-.. -....+..+...|..-++.. |.++..+...+|.+|++.+
T Consensus 305 ~l~~ad~~v~~---~g~~t~~Ea~a~G~P~v~~p~~~-~q~~~~~~v~~~g~g~~~~~~~~~~~~l~~ai~~ll~~~~~~ 380 (412)
T 3otg_A 305 LLPHVDLVVHH---GGSGTTLGALGAGVPQLSFPWAG-DSFANAQAVAQAGAGDHLLPDNISPDSVSGAAKRLLAEESYR 380 (412)
T ss_dssp HGGGCSEEEES---CCHHHHHHHHHHTCCEEECCCST-THHHHHHHHHHHTSEEECCGGGCCHHHHHHHHHHHHHCHHHH
T ss_pred HHhcCcEEEEC---CchHHHHHHHHhCCCEEecCCch-hHHHHHHHHHHcCCEEecCcccCCHHHHHHHHHHHHhCHHHH
Confidence 67779999932 45599999999999999976431 12234556777788777754 8899999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 002273 836 ANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 867 (944)
Q Consensus 836 ~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 867 (944)
+++++..++... . +..+++++.+|+.+..
T Consensus 381 ~~~~~~~~~~~~-~--~~~~~~~~~~~~l~~~ 409 (412)
T 3otg_A 381 AGARAVAAEIAA-M--PGPDEVVRLLPGFASR 409 (412)
T ss_dssp HHHHHHHHHHHH-S--CCHHHHHTTHHHHHC-
T ss_pred HHHHHHHHHHhc-C--CCHHHHHHHHHHHhcc
Confidence 988887766543 2 4889999999988743
No 218
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.87 E-value=1.4e-09 Score=96.92 Aligned_cols=95 Identities=9% Similarity=0.063 Sum_probs=87.8
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC------HHHHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN------ACAHT 120 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~ 120 (944)
++..++.+|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|++ ..+++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999999999999999999999999999998 88999
Q ss_pred HHHHHHHHcCCHHHHHHHHHH
Q 002273 121 HCGILYKDEGRLVEAAESYHK 141 (944)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~ 141 (944)
.+|.++...|++++|+..+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 999999999988877766554
No 219
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Probab=98.86 E-value=2.1e-08 Score=113.97 Aligned_cols=175 Identities=14% Similarity=0.080 Sum_probs=126.2
Q ss_pred CCeEEEecCCC--CcCCHHHHHHHHHHHhHcCC----ceEEEecCCCCC--H---HHHHHHHHHHHHc----CCC-CCcE
Q 002273 681 GFITFGSFNNL--AKITPKVLQVWARILCAVPN----SRLVVKCKPFCC--D---SVRHRFLSTLEQL----GLE-SLRV 744 (944)
Q Consensus 681 ~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~----~~l~~~~~~~~~--~---~~~~~~~~~~~~~----gi~-~~rv 744 (944)
+..++.++.|+ .|..+..++++.++++..|+ .+|+++|.+... + ..++.+.+.+.+. |.. ...|
T Consensus 254 ~~~vil~VgRl~~~Kgi~~ll~A~~~ll~~~p~~~~~v~Lv~vG~p~~~~~~~~~~l~~~l~~l~~~in~~~g~~~~~~v 333 (482)
T 1uqt_A 254 NVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTPL 333 (482)
T ss_dssp TCEEEEEECCBCGGGCHHHHHHHHHHHHHHCGGGTTTEEEEEECCBCSTTSHHHHHHHHHHHHHHHHHHHHHCBTTBCSE
T ss_pred CCEEEEEEeCCcccCCHHHHHHHHHHHHHhCccccCcEEEEEEECCCccchHHHHHHHHHHHHHHHHHhhhcccCCCceE
Confidence 34456667765 89999999999999999986 568888764321 1 2344555444332 331 1346
Q ss_pred EE-ccCccCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcCC-----cEEecCCCcccccchhHHHhhcCCcccc--c
Q 002273 745 DL-LPLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMGV-----PCVTMAGSVHAHNVGVSLLTKVGLKHLI--A 815 (944)
Q Consensus 745 ~~-~~~~~~~~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gv-----Pvvt~~g~~~~~r~~~~~l~~~gl~~~v--~ 815 (944)
+| .+.++ ..+..+.|+.+|||+-|+-+ +-|.+.+|||+||+ |||+ |+++++ ...+. ..++ .
T Consensus 334 ~~~~g~v~-~~el~~ly~~ADv~v~pS~~EGfgLv~lEAmA~g~~~~~gpvV~-------S~~~G~-~~~l~-~g~lv~p 403 (482)
T 1uqt_A 334 YYLNQHFD-RKLLMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVL-------SQFAGA-ANELT-SALIVNP 403 (482)
T ss_dssp EEECSCCC-HHHHHHHHHHCSEEEECCSSBSCCHHHHHHHHHSCTTSCCEEEE-------ETTBGG-GGTCT-TSEEECT
T ss_pred EEeCCCCC-HHHHHHHHHHccEEEECCCcccCCchHHHHHHhCCCCCCCCEEE-------ECCCCC-HHHhC-CeEEECC
Confidence 65 56655 78999999999999888866 78999999999998 7877 554321 11111 2333 3
Q ss_pred CCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 002273 816 KNEDEYVQLALQLASD-VTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNM 868 (944)
Q Consensus 816 ~~~~~y~~~a~~l~~d-~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 868 (944)
.|.+++.+...+++++ ++.++++.+++++++.+ |+...+++.+.+.|+++
T Consensus 404 ~d~~~lA~ai~~lL~~~~~~r~~~~~~~~~~v~~---~s~~~~a~~~l~~l~~~ 454 (482)
T 1uqt_A 404 YDRDEVAAALDRALTMSLAERISRHAEMLDVIVK---NDINHWQECFISDLKQI 454 (482)
T ss_dssp TCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHhc
Confidence 5899999999999884 67788888888888753 79999999999999663
No 220
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=98.86 E-value=7.2e-09 Score=115.58 Aligned_cols=170 Identities=12% Similarity=0.070 Sum_probs=121.0
Q ss_pred CCCeEEEecCCCC---cCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHH
Q 002273 680 NGFITFGSFNNLA---KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 756 (944)
Q Consensus 680 ~~~~~f~~~~~~~---K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~ 756 (944)
++.++++++.+.. |..+.++++|.++.+..|+.+|++.+++ .+..++.+++.+ +. .++|.|+|..+ ..+.
T Consensus 204 ~~~~vl~~~gr~~~~~kg~~~li~a~~~l~~~~~~~~l~i~~g~--~~~~~~~l~~~~---~~-~~~v~~~g~~~-~~~~ 276 (384)
T 1vgv_A 204 DKKMILVTGHRRESFGRGFEEICHALADIATTHQDIQIVYPVHL--NPNVREPVNRIL---GH-VKNVILIDPQE-YLPF 276 (384)
T ss_dssp TSEEEEEECCCBSSCCHHHHHHHHHHHHHHHHCTTEEEEEECCB--CHHHHHHHHHHH---TT-CTTEEEECCCC-HHHH
T ss_pred CCCEEEEEeCCccccchHHHHHHHHHHHHHhhCCCeEEEEEcCC--CHHHHHHHHHHh---hc-CCCEEEeCCCC-HHHH
Confidence 4556677777654 7778999999999999999998885332 123455555443 22 36899988766 4788
Q ss_pred HHhcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhcCHHHHH
Q 002273 757 MQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALA 836 (944)
Q Consensus 757 ~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~l~~d~~~~~ 836 (944)
...|..||+++-|. |+ +++|||++|+|||+.+-.. +..-+..-|..-+|..|+++..+...+|.+|++.++
T Consensus 277 ~~~~~~ad~~v~~S---g~-~~lEA~a~G~PvI~~~~~~-----~~~e~v~~g~g~lv~~d~~~la~~i~~ll~d~~~~~ 347 (384)
T 1vgv_A 277 VWLMNHAWLILTDS---GG-IQEEAPSLGKPVLVMRDTT-----ERPEAVTAGTVRLVGTDKQRIVEEVTRLLKDENEYQ 347 (384)
T ss_dssp HHHHHHCSEEEESS---ST-GGGTGGGGTCCEEEESSCC-----SCHHHHHHTSEEEECSSHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHhCcEEEECC---cc-hHHHHHHcCCCEEEccCCC-----CcchhhhCCceEEeCCCHHHHHHHHHHHHhChHHHh
Confidence 89999999998765 44 4899999999999854200 111122336333454699999999999999998888
Q ss_pred HHHHHHHHHhhcCCCCChHHHHHHHHHHHHHH
Q 002273 837 NLRMSLRDLMSKSPVCDGQNFALGLESTYRNM 868 (944)
Q Consensus 837 ~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ 868 (944)
++++..++. ..-|++++++..+++.|.+.
T Consensus 348 ~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~ 376 (384)
T 1vgv_A 348 AMSRAHNPY---GDGQACSRILEALKNNRISL 376 (384)
T ss_dssp HHHSSCCTT---CCSCHHHHHHHHHHHTCCCC
T ss_pred hhhhccCCC---cCCCHHHHHHHHHHHHHHhh
Confidence 888765433 24578888888888776544
No 221
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.83 E-value=2.6e-08 Score=84.90 Aligned_cols=85 Identities=41% Similarity=0.622 Sum_probs=80.7
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 002273 321 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVV 400 (944)
Q Consensus 321 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 400 (944)
.+..++..+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+.+|+++++++|++..++.++|.+
T Consensus 7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcC
Q 002273 401 YTVQG 405 (944)
Q Consensus 401 ~~~~g 405 (944)
+...|
T Consensus 87 ~~~~g 91 (91)
T 1na3_A 87 KQKQG 91 (91)
T ss_dssp HHHHC
T ss_pred HHhcC
Confidence 88765
No 222
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.80 E-value=7.6e-09 Score=90.16 Aligned_cols=92 Identities=13% Similarity=0.149 Sum_probs=71.2
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 002273 361 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQ-SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAG 439 (944)
Q Consensus 361 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g 439 (944)
+.+|.++...|++++|+..|+++++.+|+++. +++.+|.++...|++++|+..|+++++++|++..++.+ +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 45677777788888888888888888888887 88888888888888888888888888888887776643 5
Q ss_pred CHHHHHHHHHHHHhhCCCChh
Q 002273 440 SISLAIDAYEQCLKIDPDSRN 460 (944)
Q Consensus 440 ~~~eA~~~~~~al~l~P~~~~ 460 (944)
.+.+++..|++++..+|++..
T Consensus 76 ~~~~a~~~~~~~~~~~p~~~~ 96 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLEHHH 96 (99)
T ss_dssp HHHHHHHHHCCTTHHHHCCSS
T ss_pred HHHHHHHHHHHHhccCccccc
Confidence 567778888888777776643
No 223
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=98.80 E-value=1.5e-08 Score=112.57 Aligned_cols=166 Identities=14% Similarity=0.122 Sum_probs=117.9
Q ss_pred CCCCeEEEecCCCC---cCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHH
Q 002273 679 TNGFITFGSFNNLA---KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHD 755 (944)
Q Consensus 679 ~~~~~~f~~~~~~~---K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~ 755 (944)
+++.++++++++.. |..+.++++|.++.+..|+.++++.+++ ....++.+.+.+ +. .++|.|+|..+ ..+
T Consensus 203 ~~~~~vl~~~gr~~~~~K~~~~li~a~~~l~~~~~~~~~i~~~g~--~~~~~~~~~~~~---~~-~~~v~~~g~~~-~~~ 275 (375)
T 3beo_A 203 GNNRLVLMTAHRRENLGEPMRNMFRAIKRLVDKHEDVQVVYPVHM--NPVVRETANDIL---GD-YGRIHLIEPLD-VID 275 (375)
T ss_dssp TTSEEEEEECCCGGGTTHHHHHHHHHHHHHHHHCTTEEEEEECCS--CHHHHHHHHHHH---TT-CTTEEEECCCC-HHH
T ss_pred cCCCeEEEEecccccchhHHHHHHHHHHHHHhhCCCeEEEEeCCC--CHHHHHHHHHHh---hc-cCCEEEeCCCC-HHH
Confidence 34556677787764 7789999999999988999987664332 223344443332 32 36999988876 468
Q ss_pred HHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecC--CCcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhcCHH
Q 002273 756 HMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVT 833 (944)
Q Consensus 756 ~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~--g~~~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~l~~d~~ 833 (944)
....|..+|+++-|. |++.+|||++|+|||+.. |. . ..++ .-|..-+|..|.+++.+...+|.+|++
T Consensus 276 ~~~~~~~ad~~v~~s----g~~~lEA~a~G~Pvi~~~~~~~-~-----~e~v-~~g~g~~v~~d~~~la~~i~~ll~~~~ 344 (375)
T 3beo_A 276 FHNVAARSYLMLTDS----GGVQEEAPSLGVPVLVLRDTTE-R-----PEGI-EAGTLKLAGTDEETIFSLADELLSDKE 344 (375)
T ss_dssp HHHHHHTCSEEEECC----HHHHHHHHHHTCCEEECSSCCS-C-----HHHH-HTTSEEECCSCHHHHHHHHHHHHHCHH
T ss_pred HHHHHHhCcEEEECC----CChHHHHHhcCCCEEEecCCCC-C-----ceee-cCCceEEcCCCHHHHHHHHHHHHhChH
Confidence 889999999998654 556999999999999852 22 1 1122 235333444699999999999999998
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 002273 834 ALANLRMSLRDLMSKSPVCDGQNFALGLESTY 865 (944)
Q Consensus 834 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~ 865 (944)
.++++++..++. ..-|++++++..+++.+
T Consensus 345 ~~~~~~~~~~~~---~~~~~~~~i~~~~~~~~ 373 (375)
T 3beo_A 345 AHDKMSKASNPY---GDGRASERIVEAILKHF 373 (375)
T ss_dssp HHHHHCCCCCTT---CCSCHHHHHHHHHHHHT
T ss_pred hHhhhhhcCCCC---CCCcHHHHHHHHHHHHh
Confidence 888877665443 23578888888888765
No 224
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.78 E-value=1e-07 Score=88.94 Aligned_cols=109 Identities=22% Similarity=0.312 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----CCCHHHHHHH
Q 002273 304 DINQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKD----RDNLDKAVEC 379 (944)
Q Consensus 304 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~ 379 (944)
++++|+.+|+++.+....... +|.+|...+..++|+++|+++.+. .++.+++++|.+|.. .+++++|+++
T Consensus 10 d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 345555555555554422222 555555555555555555555544 345555555555554 4555555555
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q 002273 380 YQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAEMIEKAIAA 420 (944)
Q Consensus 380 ~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~~l~~al~~ 420 (944)
|+++.+. .++.+.+++|.+|.. .+++++|+.+|+++.+.
T Consensus 84 ~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 84 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 5555443 344555555555555 45555555555555444
No 225
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.77 E-value=2.4e-08 Score=113.54 Aligned_cols=127 Identities=9% Similarity=-0.043 Sum_probs=107.5
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHhh-----CCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----CCCCH---
Q 002273 328 NLGVAYGEMLKFDMAIVFYELAFHF-----NPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSI-----KPNFS--- 391 (944)
Q Consensus 328 ~la~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~--- 391 (944)
..+..+..+|+|++|+.++++++++ .+++ ...+.++|.+|..+|+|++|+.++++++++ .|+++
T Consensus 314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a 393 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLG 393 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 3455677899999999999999986 3444 568899999999999999999999999976 35554
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 002273 392 QSLNNLGVVYTVQGKMDAAAEMIEKAIAA-----NPTY---AEAYNNLGVLYRDAGSISLAIDAYEQCLKI 454 (944)
Q Consensus 392 ~~~~~la~~~~~~g~~~~A~~~l~~al~~-----~p~~---~~a~~~la~~~~~~g~~~eA~~~~~~al~l 454 (944)
..+.+||.+|..+|++++|+.+|++|+++ .|++ .+....++.++..++.+++|...|+++.+.
T Consensus 394 ~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 394 MAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999986 4554 566788999999999999999999998653
No 226
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=98.77 E-value=1.3e-07 Score=105.69 Aligned_cols=165 Identities=12% Similarity=0.093 Sum_probs=116.5
Q ss_pred CCCCeEEEecCCC--CcCC-HHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHH
Q 002273 679 TNGFITFGSFNNL--AKIT-PKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHD 755 (944)
Q Consensus 679 ~~~~~~f~~~~~~--~K~~-~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~ 755 (944)
++..+++.++++. .|-. ..++....+. ...|+.++++.+++. .++.+. ++ +++|.|.+..+ ..+
T Consensus 216 ~~~~~vlv~~G~~~~~~~~~~~~~~~~~~~-~~~p~~~~v~~~~~~----~~~~l~------~~-~~~v~~~~~~~-~~~ 282 (391)
T 3tsa_A 216 TSARRVCICMGRMVLNATGPAPLLRAVAAA-TELPGVEAVIAVPPE----HRALLT------DL-PDNARIAESVP-LNL 282 (391)
T ss_dssp CSSEEEEEECCHHHHHHHCSHHHHHHHHHH-HTSTTEEEEEECCGG----GGGGCT------TC-CTTEEECCSCC-GGG
T ss_pred CCCCEEEEEcCCCCCcccchHHHHHHHHHh-ccCCCeEEEEEECCc----chhhcc------cC-CCCEEEeccCC-HHH
Confidence 3456677777766 3334 7888888888 888999988886542 122221 34 57899999875 333
Q ss_pred HHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccccC-----CHHHHHHHHHHHhc
Q 002273 756 HMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK-----NEDEYVQLALQLAS 830 (944)
Q Consensus 756 ~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~-----~~~~y~~~a~~l~~ 830 (944)
.+..||+++- -+|++|++|||++|+|+|+++-.. -....+..+...|...++.. |.++..+...+|.+
T Consensus 283 ---ll~~ad~~v~---~~G~~t~~Ea~~~G~P~v~~p~~~-~q~~~a~~~~~~g~g~~~~~~~~~~~~~~l~~ai~~ll~ 355 (391)
T 3tsa_A 283 ---FLRTCELVIC---AGGSGTAFTATRLGIPQLVLPQYF-DQFDYARNLAAAGAGICLPDEQAQSDHEQFTDSIATVLG 355 (391)
T ss_dssp ---TGGGCSEEEE---CCCHHHHHHHHHTTCCEEECCCST-THHHHHHHHHHTTSEEECCSHHHHTCHHHHHHHHHHHHT
T ss_pred ---HHhhCCEEEe---CCCHHHHHHHHHhCCCEEecCCcc-cHHHHHHHHHHcCCEEecCcccccCCHHHHHHHHHHHHc
Confidence 4488999992 355679999999999999986421 12334556777788777765 78999999999999
Q ss_pred CHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 002273 831 DVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 866 (944)
Q Consensus 831 d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 866 (944)
|++.++++++..++.. . ....++.+..+|+...
T Consensus 356 ~~~~~~~~~~~~~~~~-~--~~~~~~~~~~i~~~~~ 388 (391)
T 3tsa_A 356 DTGFAAAAIKLSDEIT-A--MPHPAALVRTLENTAA 388 (391)
T ss_dssp CTHHHHHHHHHHHHHH-T--SCCHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHHHH-c--CCCHHHHHHHHHHHHh
Confidence 9999888877655543 2 2467888888877553
No 227
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Probab=98.76 E-value=3.4e-09 Score=118.76 Aligned_cols=145 Identities=9% Similarity=-0.012 Sum_probs=102.7
Q ss_pred CCCcCCHHHHHHHHHHHhHcCC---ceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEE
Q 002273 690 NLAKITPKVLQVWARILCAVPN---SRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDIS 766 (944)
Q Consensus 690 ~~~K~~~~~~~~~~~il~~~p~---~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~ 766 (944)
...|..+.+++++..+.+..|+ .+|+++|.+... .++|+ .++|.|+|.++ .++....|+.|||+
T Consensus 252 ~~~Kg~~~li~A~~~l~~~~~~~~~~~l~ivG~~~~~-----------~~l~~-~~~v~f~G~~~-~~~l~~~~~~adv~ 318 (413)
T 2x0d_A 252 VKRNAFTLIVEALKIFVQKYDRSNEWKIISVGEKHKD-----------IALGK-GIHLNSLGKLT-LEDYADLLKRSSIG 318 (413)
T ss_dssp CGGGCHHHHHHHHHHHHHHCTTGGGCEEEEEESCCCC-----------EEEET-TEEEEEEESCC-HHHHHHHHHHCCEE
T ss_pred hhccCHHHHHHHHHHHHHhCCCCCceEEEEEcCCchh-----------hhcCC-cCcEEEcCCCC-HHHHHHHHHhCCEE
Confidence 4568889999999999988886 799999865321 34677 47999999987 68999999999999
Q ss_pred ecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCccc-c-cCCHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 002273 767 LDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHL-I-AKNEDEYVQLALQLASDVTALANLRMSLR 843 (944)
Q Consensus 767 Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~-v-~~~~~~y~~~a~~l~~d~~~~~~~r~~~~ 843 (944)
+-|+-+ +.|.+.+|||+||+|||+-.|.. . .+.. -|-..+ | ..|++++.+...+|..|++.+++ ..+
T Consensus 319 v~pS~~E~~g~~~lEAmA~G~PVV~~~~g~-~-----e~v~-~~~~G~lv~~~d~~~la~ai~~ll~~~~~~~~---~~~ 388 (413)
T 2x0d_A 319 ISLMISPHPSYPPLEMAHFGLRVITNKYEN-K-----DLSN-WHSNIVSLEQLNPENIAETLVELCMSFNNRDV---DKK 388 (413)
T ss_dssp ECCCSSSSCCSHHHHHHHTTCEEEEECBTT-B-----CGGG-TBTTEEEESSCSHHHHHHHHHHHHHHTC----------
T ss_pred EEecCCCCCCcHHHHHHhCCCcEEEeCCCc-c-----hhhh-cCCCEEEeCCCCHHHHHHHHHHHHcCHHHHHH---hHH
Confidence 988764 78999999999999999833321 1 1111 143443 3 36999999999999999876655 222
Q ss_pred HHhhcCCCCChHHHHHH
Q 002273 844 DLMSKSPVCDGQNFALG 860 (944)
Q Consensus 844 ~~~~~~~~~~~~~~~~~ 860 (944)
++ ...|+|+..+..
T Consensus 389 ~~---~~~~~W~~~~~~ 402 (413)
T 2x0d_A 389 ES---SNMMFYINEFNE 402 (413)
T ss_dssp CC---BSCGGGCCCC--
T ss_pred HH---HHhCCHHHHHHH
Confidence 22 235777776555
No 228
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.76 E-value=1.8e-08 Score=88.16 Aligned_cols=73 Identities=22% Similarity=0.357 Sum_probs=51.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 002273 387 KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 459 (944)
Q Consensus 387 ~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~ 459 (944)
+|+++.+++.+|.++...|++++|+..|+++++++|+++.+++.+|.+|...|++++|++.|++++++.|+..
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~ 75 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEG 75 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCC
Confidence 5667777777777777777777777777777777777777777777777777777777777777777665443
No 229
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.74 E-value=1.3e-07 Score=88.09 Aligned_cols=111 Identities=19% Similarity=0.213 Sum_probs=101.4
Q ss_pred CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHH
Q 002273 337 LKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTV----QGKMDAAAE 412 (944)
Q Consensus 337 g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~----~g~~~~A~~ 412 (944)
+++++|+.+|+++.+....... +|.+|...+..++|+++|+++.+. .++.+++++|.+|.. .+++++|++
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMFGC----LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTTHH----HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCHhhh----HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 4689999999999998754443 999999999999999999999987 789999999999999 899999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhC
Q 002273 413 MIEKAIAANPTYAEAYNNLGVLYRD----AGSISLAIDAYEQCLKID 455 (944)
Q Consensus 413 ~l~~al~~~p~~~~a~~~la~~~~~----~g~~~eA~~~~~~al~l~ 455 (944)
+|+++.+. .++.+.++||.+|.. .+++++|+.+|+++.+..
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 99999987 679999999999999 999999999999999874
No 230
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.73 E-value=5.1e-08 Score=85.18 Aligned_cols=70 Identities=17% Similarity=0.284 Sum_probs=52.2
Q ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 002273 353 NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANP 422 (944)
Q Consensus 353 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p 422 (944)
+|+++.+++.+|.++...|++++|+..|+++++++|+++.+++.+|.+|...|++++|+..|++++++.|
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 5677777777777777777777777777777777777777777777777777777777777777776644
No 231
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.71 E-value=2e-08 Score=87.48 Aligned_cols=92 Identities=15% Similarity=0.198 Sum_probs=81.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q 002273 51 ALSYANILRSRNKFVDALALYEIVLEKDSGNVE-AHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDE 129 (944)
Q Consensus 51 ~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 129 (944)
.+..|..++..|++++|+..|+++++.+|++.. +++.+|.++...|++++|+..|+++++++|++..++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 467899999999999999999999999999999 99999999999999999999999999999999887744
Q ss_pred CCHHHHHHHHHHHHHcCCCCh
Q 002273 130 GRLVEAAESYHKALSADPSYK 150 (944)
Q Consensus 130 g~~~~A~~~~~~al~~~p~~~ 150 (944)
+.+.+++..|+++...+|++.
T Consensus 75 ~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp HHHHHHHHHHCCTTHHHHCCS
T ss_pred HHHHHHHHHHHHHhccCcccc
Confidence 567788888888877776653
No 232
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.66 E-value=1.4e-07 Score=107.17 Aligned_cols=132 Identities=17% Similarity=0.034 Sum_probs=106.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc-----CCCCH
Q 002273 50 DALSYANILRSRNKFVDALALYEIVLEK-----DSGN---VEAHIGKGICLQMQNMGRLAFDSFSEAVKL-----DPQNA 116 (944)
Q Consensus 50 ~~~~~A~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~ 116 (944)
..+..+..+..+|+|++|+.+++++++. .|++ ...+..+|.+|..+|+|++|+.++++++++ .|+++
T Consensus 311 ~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp 390 (490)
T 3n71_A 311 DTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNA 390 (490)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 3455667788999999999999999985 3444 567899999999999999999999999975 45554
Q ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Q 002273 117 ---CAHTHCGILYKDEGRLVEAAESYHKALSA-----DPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK 185 (944)
Q Consensus 117 ---~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~ 185 (944)
..+.++|.+|..+|++++|+..|++++++ .|+++.. +.+...++.++..++.+++|...|.++.+
T Consensus 391 ~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~----~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 391 QLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPIT----KDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999875 5666654 44556677777777778888877777654
No 233
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=98.65 E-value=1.6e-07 Score=105.08 Aligned_cols=161 Identities=15% Similarity=0.086 Sum_probs=98.0
Q ss_pred CCCeEEEecCCCCcC--------CHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCcc
Q 002273 680 NGFITFGSFNNLAKI--------TPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLIL 751 (944)
Q Consensus 680 ~~~~~f~~~~~~~K~--------~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~ 751 (944)
+..++|.++.+.... ....+....+.+... +.++++.+++. .++.+. .+ +++|.|.++++
T Consensus 226 ~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~al~~~-~~~~v~~~~~~----~~~~l~------~~-~~~v~~~~~~~ 293 (398)
T 4fzr_A 226 KQPRLCLTFGTRVPLPNTNTIPGGLSLLQALSQELPKL-GFEVVVAVSDK----LAQTLQ------PL-PEGVLAAGQFP 293 (398)
T ss_dssp SSCEEECC----------------CCSHHHHHHHGGGG-TCEEEECCCC------------------C-CTTEEEESCCC
T ss_pred CCCEEEEEccCcccccccccccchHHHHHHHHHHHHhC-CCEEEEEeCCc----chhhhc------cC-CCcEEEeCcCC
Confidence 445666666655321 223344444445555 46666665441 122222 23 68999999874
Q ss_pred CcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccccC---CHHHHHHHHHHH
Q 002273 752 LNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQL 828 (944)
Q Consensus 752 ~~~~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~---~~~~y~~~a~~l 828 (944)
+...+..||+++ .-+|++|++|||++|||+|+++-..- ....+..+...|..-++.. |.++..+...+|
T Consensus 294 ----~~~ll~~ad~~v---~~gG~~t~~Ea~~~G~P~v~~p~~~~-q~~~a~~~~~~g~g~~~~~~~~~~~~l~~ai~~l 365 (398)
T 4fzr_A 294 ----LSAIMPACDVVV---HHGGHGTTLTCLSEGVPQVSVPVIAE-VWDSARLLHAAGAGVEVPWEQAGVESVLAACARI 365 (398)
T ss_dssp ----HHHHGGGCSEEE---ECCCHHHHHHHHHTTCCEEECCCSGG-GHHHHHHHHHTTSEEECC-------CHHHHHHHH
T ss_pred ----HHHHHhhCCEEE---ecCCHHHHHHHHHhCCCEEecCCchh-HHHHHHHHHHcCCEEecCcccCCHHHHHHHHHHH
Confidence 344556699999 24666999999999999999875321 2234556677788777753 678888888999
Q ss_pred hcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHH
Q 002273 829 ASDVTALANLRMSLRDLMSKSPVCDGQNFALGLES 863 (944)
Q Consensus 829 ~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~ 863 (944)
.+|++.++++++..++.. ....+++.+..+|+
T Consensus 366 l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~ 397 (398)
T 4fzr_A 366 RDDSSYVGNARRLAAEMA---TLPTPADIVRLIEQ 397 (398)
T ss_dssp HHCTHHHHHHHHHHHHHT---TSCCHHHHHHHHTC
T ss_pred HhCHHHHHHHHHHHHHHH---cCCCHHHHHHHHhc
Confidence 999999888887776553 23568888887764
No 234
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A*
Probab=98.64 E-value=5.7e-08 Score=108.88 Aligned_cols=145 Identities=11% Similarity=0.048 Sum_probs=110.4
Q ss_pred CCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhc
Q 002273 681 GFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY 760 (944)
Q Consensus 681 ~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~ 760 (944)
+..+++.+++..+.- .. +..+.+..|+.+|+|+|.+. ++++|+ .++|.|+|.++ .++....|
T Consensus 221 ~~~~i~~vGrl~~~K-g~---~~~l~~~~~~~~l~ivG~g~------------~~~~~l-~~~V~f~G~~~-~~~l~~~~ 282 (406)
T 2hy7_A 221 EGIHAVAVGSMLFDP-EF---FVVASKAFPQVTFHVIGSGM------------GRHPGY-GDNVIVYGEMK-HAQTIGYI 282 (406)
T ss_dssp SSEEEEEECCTTBCH-HH---HHHHHHHCTTEEEEEESCSS------------CCCTTC-CTTEEEECCCC-HHHHHHHH
T ss_pred CCcEEEEEecccccc-CH---HHHHHHhCCCeEEEEEeCch------------HHhcCC-CCCEEEcCCCC-HHHHHHHH
Confidence 335677777775432 22 67777888999999998652 456687 58999999987 67899999
Q ss_pred ccccEEecCCCC-CCcccHHHhh-------hcCCcEEecCCCcccccchhHHHhhcCCcccc---cCCHHHHHHHHHHHh
Q 002273 761 SLMDISLDTFPY-AGTTTTCESL-------YMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLI---AKNEDEYVQLALQLA 829 (944)
Q Consensus 761 ~~~Di~Ld~~~~-~~~~t~~eal-------~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v---~~~~~~y~~~a~~l~ 829 (944)
+.+||++-|+.+ +.|.+.+||| ++|+|||+ +++ +.. |-..++ ..|++++.+...++.
T Consensus 283 ~~adv~v~ps~~E~~~~~~lEAm~Kl~eYla~G~PVIa-------s~~----v~~-~~~G~l~v~~~d~~~la~ai~~ll 350 (406)
T 2hy7_A 283 KHARFGIAPYASEQVPVYLADSSMKLLQYDFFGLPAVC-------PNA----VVG-PYKSRFGYTPGNADSVIAAITQAL 350 (406)
T ss_dssp HTCSEEECCBSCSCCCTTHHHHCHHHHHHHHHTCCEEE-------EGG----GTC-SCSSEEEECTTCHHHHHHHHHHHH
T ss_pred HhcCEEEECCCcccCchHHHHHHHHHHHHhhCCCcEEE-------ehh----ccc-CcceEEEeCCCCHHHHHHHHHHHH
Confidence 999999988865 7799999999 99999999 544 111 333333 469999999999999
Q ss_pred cCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHH--HHH
Q 002273 830 SDVTALANLRMSLRDLMSKSPVCDGQNFALGLEST--YRN 867 (944)
Q Consensus 830 ~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~--~~~ 867 (944)
.|++ + + ....|+++..++.++++ |..
T Consensus 351 ~~~~---------~-~--~~~~~sw~~~a~~~~~~~~y~~ 378 (406)
T 2hy7_A 351 EAPR---------V-R--YRQCLNWSDTTDRVLDPRAYPE 378 (406)
T ss_dssp HCCC---------C-C--CSCCCBHHHHHHHHHCGGGSGG
T ss_pred hCcc---------h-h--hhhcCCHHHHHHHHHHhhcccc
Confidence 9886 1 2 23569999999999888 653
No 235
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.63 E-value=4.6e-07 Score=92.51 Aligned_cols=185 Identities=11% Similarity=0.029 Sum_probs=126.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC---------------------CHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 002273 65 VDALALYEIVLEKDSGNVEAHIGKGICLQMQN---------------------MGRLAFDSFSEAVKLDPQNACAHTHCG 123 (944)
Q Consensus 65 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---------------------~~~~A~~~~~~al~~~p~~~~~~~~la 123 (944)
.-.+.+++-++..+|++...+...+..|..-. ++..|.++|.++.+. ...+
T Consensus 49 P~~Lk~~e~Ll~~~P~~~~Ll~~~a~ly~~Ya~afV~~~a~~~~~~~~~~~~~~~~RA~~Ly~ra~~y--------~~ra 120 (301)
T 3u64_A 49 PLVLKVYEALHLQNPAHRGLSLAVGRLYIMYANAFVQTPAQYLPEDEFEAQNEAYSRARKLYLRGARY--------ALSS 120 (301)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHTHHHHHTSCGGGHHHHHHHHHHHHHHHHHHHHH--------HHHH
T ss_pred cHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHhcCchhhcchhhHhhhhhhHHHHHHHHHHHHHH--------HHHH
Confidence 34577888899999999877666555543221 234555555555431 1111
Q ss_pred HHHHHcCCHHHHHH-----HHHHHH-HcCCCChhHHhHHHHHHHHHHHH----HHHcCChHHHHHHHHHHHhhCCC--CH
Q 002273 124 ILYKDEGRLVEAAE-----SYHKAL-SADPSYKPAAECLAIVLTDLGTS----LKLAGNTQDGIQKYYEALKIDPH--YA 191 (944)
Q Consensus 124 ~~~~~~g~~~~A~~-----~~~~al-~~~p~~~~~~~~la~~~~~lg~~----~~~~g~~~~A~~~~~~al~~~p~--~~ 191 (944)
. ......+.+++. -+.+++ +.+|++.+.....+.++...+.. ....+...+|...++++++++|+ +.
T Consensus 121 L-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~G 199 (301)
T 3u64_A 121 L-ETAYPGFTREVFSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEG 199 (301)
T ss_dssp H-HHHSTTHHHHHTSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHH
T ss_pred H-HHhCccHHHHHHhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccC
Confidence 1 111223332222 223333 45666666655544444332211 11223457899999999999999 67
Q ss_pred HHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCc
Q 002273 192 PAYYNLGVVYSEL-----MQYDTALGCYEKAALERPMY-AEAYCNMGVIYKN-RGDLESAIACYERCLAVSPNF 258 (944)
Q Consensus 192 ~~~~~la~~~~~~-----g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~ 258 (944)
.+|..+|.+|... |+.++|.++|+++++++|+. ...++..|..+.. .|++++|..++++++...|..
T Consensus 200 sA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 200 AVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 7999999999995 99999999999999999975 9999999999988 499999999999999988763
No 236
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.63 E-value=7.7e-07 Score=90.89 Aligned_cols=108 Identities=18% Similarity=0.103 Sum_probs=93.6
Q ss_pred hhCCCCHHHHHHHHHHHHH---C--C------CHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHc-----CCHHHHHH
Q 002273 351 HFNPHCAEACNNLGVIYKD---R--D------NLDKAVECYQMALSIKPN--FSQSLNNLGVVYTVQ-----GKMDAAAE 412 (944)
Q Consensus 351 ~~~p~~~~~~~~la~~~~~---~--g------~~~~A~~~~~~al~~~p~--~~~~~~~la~~~~~~-----g~~~~A~~ 412 (944)
+.+|++++.++-.|.+... . | ...+|...++++++++|+ +..++..+|.+|... |+.++|.+
T Consensus 146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~ 225 (301)
T 3u64_A 146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHT 225 (301)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHH
T ss_pred HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHH
Confidence 4578888887777766533 1 2 367899999999999999 566999999999995 99999999
Q ss_pred HHHHHHHhCCCC-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCC
Q 002273 413 MIEKAIAANPTY-AEAYNNLGVLYRD-AGSISLAIDAYEQCLKIDPDS 458 (944)
Q Consensus 413 ~l~~al~~~p~~-~~a~~~la~~~~~-~g~~~eA~~~~~~al~l~P~~ 458 (944)
+|+++++++|+. ..+++.+|..+.. .|++++|.+++++++..+|..
T Consensus 226 ~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 226 AFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 999999999975 9999999999988 499999999999999998874
No 237
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora}
Probab=98.62 E-value=3.3e-06 Score=94.43 Aligned_cols=169 Identities=15% Similarity=0.117 Sum_probs=116.8
Q ss_pred CCCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHH
Q 002273 678 LTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 757 (944)
Q Consensus 678 ~~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~ 757 (944)
.++..+++.++.+..+...+.+....+.+...|--.++..|.+.. ++.+. .+ +++|.|.+.++ ..
T Consensus 228 ~~~~~~v~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----~~~~~------~~-~~~v~~~~~~~-~~--- 292 (402)
T 3ia7_A 228 RPDAPVLLVSLGNQFNEHPEFFRACAQAFADTPWHVVMAIGGFLD----PAVLG------PL-PPNVEAHQWIP-FH--- 292 (402)
T ss_dssp STTCCEEEEECCSCSSCCHHHHHHHHHHHTTSSCEEEEECCTTSC----GGGGC------SC-CTTEEEESCCC-HH---
T ss_pred CCCCCEEEEECCCCCcchHHHHHHHHHHHhcCCcEEEEEeCCcCC----hhhhC------CC-CCcEEEecCCC-HH---
Confidence 345677888888887777777777777777777333343443211 11111 13 68999999876 22
Q ss_pred HhcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccccC---CHHHHHHHHHHHhcCHHH
Q 002273 758 QAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQLASDVTA 834 (944)
Q Consensus 758 ~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~---~~~~y~~~a~~l~~d~~~ 834 (944)
..+..||+++- -+|++|++|||++|+|+|.++-...-....+..+...|..-.+.. |.++..+...+|.+|++.
T Consensus 293 ~ll~~ad~~v~---~~G~~t~~Ea~~~G~P~v~~p~~~~~q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~~~~ll~~~~~ 369 (402)
T 3ia7_A 293 SVLAHARACLT---HGTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIELGLGSVLRPDQLEPASIREAVERLAADSAV 369 (402)
T ss_dssp HHHTTEEEEEE---CCCHHHHHHHHHTTCCEEECGGGCGGGHHHHHHHHHTTSEEECCGGGCSHHHHHHHHHHHHHCHHH
T ss_pred HHHhhCCEEEE---CCCHHHHHHHHHhCCCEEEeCCCcccHHHHHHHHHHcCCEEEccCCCCCHHHHHHHHHHHHcCHHH
Confidence 66777999883 255588899999999999886512223345667777888776654 789999999999999988
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 002273 835 LANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 867 (944)
Q Consensus 835 ~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 867 (944)
++++++..++. . .....++.+..+|+.++.
T Consensus 370 ~~~~~~~~~~~-~--~~~~~~~~~~~i~~~~~~ 399 (402)
T 3ia7_A 370 RERVRRMQRDI-L--SSGGPARAADEVEAYLGR 399 (402)
T ss_dssp HHHHHHHHHHH-H--TSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-h--hCChHHHHHHHHHHHHhh
Confidence 88877655443 2 225678888888887753
No 238
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase; 1.70A {Streptomyces hygroscopicus} PDB: 4f97_A* 4f96_B* 4f9f_A* 3t7d_A*
Probab=98.62 E-value=3.9e-07 Score=102.19 Aligned_cols=175 Identities=9% Similarity=-0.008 Sum_probs=124.4
Q ss_pred CeEEEecCCC--CcCCHHHHHHHHHHHhHcCCc---eEEEecCCCC-CH----HHHHHHHHHHHHc----CCCCCcEEEc
Q 002273 682 FITFGSFNNL--AKITPKVLQVWARILCAVPNS---RLVVKCKPFC-CD----SVRHRFLSTLEQL----GLESLRVDLL 747 (944)
Q Consensus 682 ~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~---~l~~~~~~~~-~~----~~~~~~~~~~~~~----gi~~~rv~~~ 747 (944)
..++.+..++ .|..+..++++ ++|+..|+. +|++++.+.. +. .+++.+.+...+. |.. +|+|+
T Consensus 281 ~~lIl~VgRLd~~KGi~~lL~Af-~ll~~~P~~~~v~Lv~Vg~psr~~~~~y~~l~~~l~~lv~~in~~~g~~--~V~f~ 357 (496)
T 3t5t_A 281 HRLVVHSGRTDPIKNAERAVRAF-VLAARGGGLEKTRMLVRMNPNRLYVPANADYVHRVETAVAEANAELGSD--TVRID 357 (496)
T ss_dssp SEEEEEEEESSGGGCHHHHHHHH-HHHHHTSSCTTEEEEEEEECCCTTSHHHHHHHHHHHHHHHHHHHHHCTT--SEEEE
T ss_pred ceEEEEcccCccccCHHHHHHHH-HHHHhCcccceEEEEEEECCCCCCchHHHHHHHHHHHHHHHhccccCCc--CEEEe
Confidence 3445555655 89999999999 999999974 5777765432 21 2334444443332 553 89999
Q ss_pred cCccCcHHHHHhcccccEEecCCCC-CCcccHHHhhhcC---CcEEecCCCcccccchhHHHhhcCCcccc--cCCHHHH
Q 002273 748 PLILLNHDHMQAYSLMDISLDTFPY-AGTTTTCESLYMG---VPCVTMAGSVHAHNVGVSLLTKVGLKHLI--AKNEDEY 821 (944)
Q Consensus 748 ~~~~~~~~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~g---vPvvt~~g~~~~~r~~~~~l~~~gl~~~v--~~~~~~y 821 (944)
+.++ ..+..+.|+.+||++-|+-+ +-|.+++|||+|| .|+|. |.++++ ...+|-..++ ..|.++.
T Consensus 358 g~v~-~~el~aly~~ADv~vv~SlrEGfgLv~~EamA~~~~~g~lVl-------Se~aGa-~~~l~~~allVnP~D~~~l 428 (496)
T 3t5t_A 358 NDND-VNHTIACFRRADLLIFNSTVDGQNLSTFEAPLVNERDADVIL-------SETCGA-AEVLGEYCRSVNPFDLVEQ 428 (496)
T ss_dssp ECCC-HHHHHHHHHHCSEEEECCSSBSCCSHHHHHHHHCSSCCEEEE-------ETTBTT-HHHHGGGSEEECTTBHHHH
T ss_pred CCCC-HHHHHHHHHhccEEEECcccccCChhHHHHHHhCCCCCCEEE-------eCCCCC-HHHhCCCEEEECCCCHHHH
Confidence 9876 78999999999999999877 7799999999996 66665 555421 1111212233 3588999
Q ss_pred HHHHHHHhcCH-HHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHH
Q 002273 822 VQLALQLASDV-TALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHR 871 (944)
Q Consensus 822 ~~~a~~l~~d~-~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 871 (944)
.+...++.+++ +++++..+++++.+.+ +|...|+..+.+.++..+.+
T Consensus 429 A~AI~~aL~m~~~er~~r~~~~~~~V~~---~d~~~W~~~fl~~L~~~~~~ 476 (496)
T 3t5t_A 429 AEAISAALAAGPRQRAEAAARRRDAARP---WTLEAWVQAQLDGLAADHAA 476 (496)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHTT---CBHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHhhcccc
Confidence 98888887754 6777777888888743 68999999999888887654
No 239
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.61 E-value=6.9e-07 Score=95.42 Aligned_cols=145 Identities=19% Similarity=0.121 Sum_probs=112.7
Q ss_pred HHHHhCCCCHHHH--HHHHHHHHHcCC---hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC-------HHHHH-HHH
Q 002273 314 KALYYNWHYADAM--YNLGVAYGEMLK---FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDN-------LDKAV-ECY 380 (944)
Q Consensus 314 ~al~~~p~~~~~~--~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-------~~~A~-~~~ 380 (944)
++....|.+..+| +..|..+...+. ..+|+.+|+++++++|+++.++..++.+|..... ..+++ ..+
T Consensus 185 r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~ 264 (372)
T 3ly7_A 185 TLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEI 264 (372)
T ss_dssp HHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHH
Confidence 3445566665543 445666665544 5899999999999999999999988887753211 11111 122
Q ss_pred HH--HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 002273 381 QM--ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDS 458 (944)
Q Consensus 381 ~~--al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~ 458 (944)
+. ++...|.++.++..++..+...|++++|+..+++++.++|+ ..++..+|.++...|++++|++.|++|+.++|..
T Consensus 265 ~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 265 DNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp HHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred HHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 22 23557999999999999999999999999999999999975 7788999999999999999999999999999987
Q ss_pred h
Q 002273 459 R 459 (944)
Q Consensus 459 ~ 459 (944)
+
T Consensus 344 ~ 344 (372)
T 3ly7_A 344 N 344 (372)
T ss_dssp H
T ss_pred C
Confidence 5
No 240
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A*
Probab=98.60 E-value=7.7e-06 Score=91.91 Aligned_cols=166 Identities=16% Similarity=0.155 Sum_probs=115.3
Q ss_pred CCCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEE-ecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHH
Q 002273 678 LTNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVV-KCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 756 (944)
Q Consensus 678 ~~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~-~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~ 756 (944)
.++..+++.++.+..+...+.+....+.+...| .++++ .|.+.. ++.+ . .+ +++|.+.+.++ ..
T Consensus 244 ~~~~~~v~v~~Gs~~~~~~~~~~~~~~al~~~~-~~~v~~~g~~~~----~~~l----~--~~-~~~v~~~~~~~-~~-- 308 (415)
T 3rsc_A 244 ADDLPVVLVSLGTTFNDRPGFFRDCARAFDGQP-WHVVMTLGGQVD----PAAL----G--DL-PPNVEAHRWVP-HV-- 308 (415)
T ss_dssp SSCCCEEEEECTTTSCCCHHHHHHHHHHHTTSS-CEEEEECTTTSC----GGGG----C--CC-CTTEEEESCCC-HH--
T ss_pred CCCCCEEEEECCCCCCChHHHHHHHHHHHhcCC-cEEEEEeCCCCC----hHHh----c--CC-CCcEEEEecCC-HH--
Confidence 345678888888887777777777777788777 55555 343211 1111 1 23 57899999876 23
Q ss_pred HHhcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccccC---CHHHHHHHHHHHhcCHH
Q 002273 757 MQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQLASDVT 833 (944)
Q Consensus 757 ~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~---~~~~y~~~a~~l~~d~~ 833 (944)
..+..||+++- -+|+.|++||+++|||+|.++-. .-....+..+...|..-.+.. |.++..+...+|.+|++
T Consensus 309 -~ll~~ad~~v~---~~G~~t~~Ea~~~G~P~v~~p~~-~~q~~~a~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~ 383 (415)
T 3rsc_A 309 -KVLEQATVCVT---HGGMGTLMEALYWGRPLVVVPQS-FDVQPMARRVDQLGLGAVLPGEKADGDTLLAAVGAVAADPA 383 (415)
T ss_dssp -HHHHHEEEEEE---SCCHHHHHHHHHTTCCEEECCCS-GGGHHHHHHHHHHTCEEECCGGGCCHHHHHHHHHHHHTCHH
T ss_pred -HHHhhCCEEEE---CCcHHHHHHHHHhCCCEEEeCCc-chHHHHHHHHHHcCCEEEcccCCCCHHHHHHHHHHHHcCHH
Confidence 55566999883 25557899999999999998742 223334667777788776654 78999999999999998
Q ss_pred HHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 002273 834 ALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 866 (944)
Q Consensus 834 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 866 (944)
.++++++..++. ... ...++.+..+|+.++
T Consensus 384 ~~~~~~~~~~~~-~~~--~~~~~~~~~i~~~~~ 413 (415)
T 3rsc_A 384 LLARVEAMRGHV-RRA--GGAARAADAVEAYLA 413 (415)
T ss_dssp HHHHHHHHHHHH-HHS--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-Hhc--CHHHHHHHHHHHHhh
Confidence 888876655443 222 457788888887765
No 241
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=98.54 E-value=1.8e-06 Score=96.46 Aligned_cols=160 Identities=9% Similarity=0.016 Sum_probs=103.4
Q ss_pred CCCCeEEEecCCCCcC--CHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHH
Q 002273 679 TNGFITFGSFNNLAKI--TPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 756 (944)
Q Consensus 679 ~~~~~~f~~~~~~~K~--~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~ 756 (944)
++..+++.++.+.... ..+.+....+.+... +.++++.+++.. ++.+. ++ +++|.|.++++ ..+.
T Consensus 230 ~~~~~v~v~~G~~~~~~~~~~~~~~~~~~l~~~-~~~~v~~~g~~~----~~~l~------~~-~~~v~~~~~~~-~~~l 296 (398)
T 3oti_A 230 PARPEVAITMGTIELQAFGIGAVEPIIAAAGEV-DADFVLALGDLD----ISPLG------TL-PRNVRAVGWTP-LHTL 296 (398)
T ss_dssp CSSCEEEECCTTTHHHHHCGGGHHHHHHHHHTS-SSEEEEECTTSC----CGGGC------SC-CTTEEEESSCC-HHHH
T ss_pred CCCCEEEEEcCCCccccCcHHHHHHHHHHHHcC-CCEEEEEECCcC----hhhhc------cC-CCcEEEEccCC-HHHH
Confidence 4556778888877321 334444444555555 567777655421 11111 34 68999999874 4444
Q ss_pred HHhcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchh--HHHhhcCCcccccC---CHHHHHHHHHHHhcC
Q 002273 757 MQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGV--SLLTKVGLKHLIAK---NEDEYVQLALQLASD 831 (944)
Q Consensus 757 ~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~--~~l~~~gl~~~v~~---~~~~y~~~a~~l~~d 831 (944)
+..||+++- -+|++|++|||++|||+|+++-..- ....+ ..+...|..-++.. +.+... +|.+|
T Consensus 297 ---l~~ad~~v~---~~G~~t~~Eal~~G~P~v~~p~~~d-q~~~a~~~~~~~~g~g~~~~~~~~~~~~l~----~ll~~ 365 (398)
T 3oti_A 297 ---LRTCTAVVH---HGGGGTVMTAIDAGIPQLLAPDPRD-QFQHTAREAVSRRGIGLVSTSDKVDADLLR----RLIGD 365 (398)
T ss_dssp ---HTTCSEEEE---CCCHHHHHHHHHHTCCEEECCCTTC-CSSCTTHHHHHHHTSEEECCGGGCCHHHHH----HHHHC
T ss_pred ---HhhCCEEEE---CCCHHHHHHHHHhCCCEEEcCCCch-hHHHHHHHHHHHCCCEEeeCCCCCCHHHHH----HHHcC
Confidence 456999992 3666899999999999999864221 22234 66777788776643 334333 88899
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 002273 832 VTALANLRMSLRDLMSKSPVCDGQNFALGLESTY 865 (944)
Q Consensus 832 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~ 865 (944)
++.++++++..++.. .. ..++..+..+|+..
T Consensus 366 ~~~~~~~~~~~~~~~-~~--~~~~~~~~~l~~l~ 396 (398)
T 3oti_A 366 ESLRTAAREVREEMV-AL--PTPAETVRRIVERI 396 (398)
T ss_dssp HHHHHHHHHHHHHHH-TS--CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-hC--CCHHHHHHHHHHHh
Confidence 999988877766543 22 47888888888764
No 242
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.54 E-value=1.6e-06 Score=92.71 Aligned_cols=145 Identities=14% Similarity=0.046 Sum_probs=97.9
Q ss_pred HHHHhCCCCHHHH--HHHHHHHHHhCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-------HHHHH-HHH
Q 002273 73 IVLEKDSGNVEAH--IGKGICLQMQNM---GRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGR-------LVEAA-ESY 139 (944)
Q Consensus 73 ~al~~~p~~~~~~--~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~-------~~~A~-~~~ 139 (944)
++....|.+..+| +..|..+...+. ..+|+.+|+++++++|+++.++..++.+|..... ..+++ ..+
T Consensus 185 r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~ 264 (372)
T 3ly7_A 185 TLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEI 264 (372)
T ss_dssp HHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHH
Confidence 4445566654443 556666665543 4678888888888888888888777776642110 11111 122
Q ss_pred HHH--HHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002273 140 HKA--LSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 217 (944)
Q Consensus 140 ~~a--l~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 217 (944)
+.+ +...|.+.. ++..++..+...|++++|+..+++++.++|+ ..++..+|.++...|++++|++.|+++
T Consensus 265 ~a~~a~~~~~~~a~-------~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~A 336 (372)
T 3ly7_A 265 DNIVTLPELNNLSI-------IYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTA 336 (372)
T ss_dssp HHHHTCGGGTTCHH-------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhcccCCcCHH-------HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 221 234455544 3555666666678999999999999998864 677788899999999999999999999
Q ss_pred HHhCCCCH
Q 002273 218 ALERPMYA 225 (944)
Q Consensus 218 l~~~p~~~ 225 (944)
+.++|...
T Consensus 337 lrL~P~~~ 344 (372)
T 3ly7_A 337 FNLRPGAN 344 (372)
T ss_dssp HHHSCSHH
T ss_pred HhcCCCcC
Confidence 99988764
No 243
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=98.51 E-value=1.1e-06 Score=97.52 Aligned_cols=142 Identities=17% Similarity=0.151 Sum_probs=100.9
Q ss_pred CCCeEEEecCCC--CcCCHHHHHHHHHHHhHcCCceEEEe-cCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHH
Q 002273 680 NGFITFGSFNNL--AKITPKVLQVWARILCAVPNSRLVVK-CKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 756 (944)
Q Consensus 680 ~~~~~f~~~~~~--~K~~~~~~~~~~~il~~~p~~~l~~~-~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~ 756 (944)
++.++++++++. .|..+.+++++.++.+..|+.++++. |.+ ...++.+++.+. . .++|.|++..+ ..+.
T Consensus 197 ~~~~vl~~~gr~~~~k~~~~ll~a~~~l~~~~~~~~lv~~~g~~---~~~~~~l~~~~~---~-~~~v~~~g~~g-~~~~ 268 (376)
T 1v4v_A 197 EGPYVTVTMHRRENWPLLSDLAQALKRVAEAFPHLTFVYPVHLN---PVVREAVFPVLK---G-VRNFVLLDPLE-YGSM 268 (376)
T ss_dssp SSCEEEECCCCGGGGGGHHHHHHHHHHHHHHCTTSEEEEECCSC---HHHHHHHHHHHT---T-CTTEEEECCCC-HHHH
T ss_pred CCCEEEEEeCcccchHHHHHHHHHHHHHHhhCCCeEEEEECCCC---HHHHHHHHHHhc---c-CCCEEEECCCC-HHHH
Confidence 455667777754 45678899999999888999988876 432 235566655542 2 36999998765 4588
Q ss_pred HHhcccccEEecCCCCCCcccHHHhhhcCCcEEecC--CCcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhcCHHH
Q 002273 757 MQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA--GSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTA 834 (944)
Q Consensus 757 ~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~--g~~~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~l~~d~~~ 834 (944)
...|..||+++-+. ||. ++|||++|+|||+.+ |... . +. ..|..-+|..|+++..+...+|.+|++.
T Consensus 269 ~~~~~~ad~~v~~S---~g~-~lEA~a~G~PvI~~~~~~~~~-~-----~~-~~g~g~lv~~d~~~la~~i~~ll~d~~~ 337 (376)
T 1v4v_A 269 AALMRASLLLVTDS---GGL-QEEGAALGVPVVVLRNVTERP-E-----GL-KAGILKLAGTDPEGVYRVVKGLLENPEE 337 (376)
T ss_dssp HHHHHTEEEEEESC---HHH-HHHHHHTTCCEEECSSSCSCH-H-----HH-HHTSEEECCSCHHHHHHHHHHHHTCHHH
T ss_pred HHHHHhCcEEEECC---cCH-HHHHHHcCCCEEeccCCCcch-h-----hh-cCCceEECCCCHHHHHHHHHHHHhChHh
Confidence 88999999997554 444 779999999999743 2211 1 12 2343334447999999999999999988
Q ss_pred HHHHHH
Q 002273 835 LANLRM 840 (944)
Q Consensus 835 ~~~~r~ 840 (944)
++++++
T Consensus 338 ~~~~~~ 343 (376)
T 1v4v_A 338 LSRMRK 343 (376)
T ss_dssp HHHHHH
T ss_pred hhhhcc
Confidence 777764
No 244
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A*
Probab=98.51 E-value=2.1e-07 Score=106.22 Aligned_cols=119 Identities=21% Similarity=0.125 Sum_probs=81.9
Q ss_pred EEEccCccCcH------HHHHhcccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhH---HHhhcC----
Q 002273 744 VDLLPLILLNH------DHMQAYSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVS---LLTKVG---- 809 (944)
Q Consensus 744 v~~~~~~~~~~------~~~~~~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~---~l~~~g---- 809 (944)
|+|.|.-.+.. ++...|+.||+++-|.-| +.|.|.+|||+||+|||| +++|+- +-...|
T Consensus 494 VIf~P~~L~~~d~lf~~d~~~~~~~advfV~PS~~EgfGl~~LEAmA~G~PvI~-------s~~gG~~d~V~dg~~~~~~ 566 (725)
T 3nb0_A 494 MIFHPEFLNANNPILGLDYDEFVRGCHLGVFPSYYEPWGYTPAECTVMGVPSIT-------TNVSGFGSYMEDLIETNQA 566 (725)
T ss_dssp EEECCSCCCTTCSSSCCCHHHHHHHCSEEECCCSSBSSCHHHHHHHHTTCCEEE-------ETTBHHHHHHHTTSCHHHH
T ss_pred EEEeccccCCCCccchhHHHHHHhhceEEEeccccCCCCHHHHHHHHcCCCEEE-------eCCCChhhhhhccccccCC
Confidence 56665544332 578888999999988876 889999999999999999 777642 111111
Q ss_pred -Ccc-cc----cCCHHHHHHHHHHH----h-cCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHHHH
Q 002273 810 -LKH-LI----AKNEDEYVQLALQL----A-SDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWHRY 872 (944)
Q Consensus 810 -l~~-~v----~~~~~~y~~~a~~l----~-~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~ 872 (944)
-.. +| ..|.++.++...+. . .|+..+..+|.+.++. +..|+++.+++.++++|+.+..+-
T Consensus 567 ~~tG~lV~~rd~~d~ee~aeaLa~aL~~f~~~d~~~r~~mr~~ar~~---A~~FSWe~iA~~Yl~~Ye~aL~~~ 637 (725)
T 3nb0_A 567 KDYGIYIVDRRFKAPDESVEQLVDYMEEFVKKTRRQRINQRNATEAL---SDLLDWKRMGLEYVKARQLALRRG 637 (725)
T ss_dssp HHTTEEEECCSSSCHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHG---GGGGBHHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEeCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---HHhCCHHHHHHHHHHHHHHHHhhc
Confidence 112 33 13455544433332 2 3777888888877644 246999999999999999987643
No 245
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=98.45 E-value=1.4e-06 Score=95.99 Aligned_cols=128 Identities=16% Similarity=0.195 Sum_probs=88.1
Q ss_pred HHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCc---ccccchhHH
Q 002273 728 HRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSV---HAHNVGVSL 804 (944)
Q Consensus 728 ~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~---~~~r~~~~~ 804 (944)
+.+.+.....++ ++.+.+++. +.-..|..+|+++- -+|++|++|++++|+|+|..|-.. -.....|..
T Consensus 224 ~~~~~~~~~~~~---~~~v~~f~~---dm~~~l~~aDlvI~---raG~~Tv~E~~a~G~P~Ilip~p~~~~~~Q~~NA~~ 294 (365)
T 3s2u_A 224 EITAERYRTVAV---EADVAPFIS---DMAAAYAWADLVIC---RAGALTVSELTAAGLPAFLVPLPHAIDDHQTRNAEF 294 (365)
T ss_dssp HHHHHHHHHTTC---CCEEESCCS---CHHHHHHHCSEEEE---CCCHHHHHHHHHHTCCEEECC-----CCHHHHHHHH
T ss_pred ccccceeccccc---ccccccchh---hhhhhhccceEEEe---cCCcchHHHHHHhCCCeEEeccCCCCCcHHHHHHHH
Confidence 455566667766 355567754 34456677999983 267899999999999988765221 112344677
Q ss_pred HhhcCCcccccC---CHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHH
Q 002273 805 LTKVGLKHLIAK---NEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRN 867 (944)
Q Consensus 805 l~~~gl~~~v~~---~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 867 (944)
|...|...+|.. |.++..+...+|.+|++.+++|+++.|+.. .-.-.++.++.+|++-+.
T Consensus 295 l~~~G~a~~l~~~~~~~~~L~~~i~~ll~d~~~~~~m~~~a~~~~---~~~aa~~ia~~i~~larG 357 (365)
T 3s2u_A 295 LVRSGAGRLLPQKSTGAAELAAQLSEVLMHPETLRSMADQARSLA---KPEATRTVVDACLEVARG 357 (365)
T ss_dssp HHTTTSEEECCTTTCCHHHHHHHHHHHHHCTHHHHHHHHHHHHTC---CTTHHHHHHHHHHHHC--
T ss_pred HHHCCCEEEeecCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHhcC---CccHHHHHHHHHHHHHcc
Confidence 888898888754 578899999999999999999999988752 222355666666655443
No 246
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.42 E-value=9.6e-07 Score=81.51 Aligned_cols=92 Identities=11% Similarity=0.029 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHHHHH
Q 002273 373 LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQG---KMDAAAEMIEKAIAAN-P-TYAEAYNNLGVLYRDAGSISLAIDA 447 (944)
Q Consensus 373 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~l~~al~~~-p-~~~~a~~~la~~~~~~g~~~eA~~~ 447 (944)
...+.+.|.+.++.++.+.++.+++|+++.+.+ +.++++.+++..++.+ | +..+++|+||..+.++|+|++|+++
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 466778888888888889999999999999988 6679999999999998 7 5689999999999999999999999
Q ss_pred HHHHHhhCCCChhhhhh
Q 002273 448 YEQCLKIDPDSRNAGQN 464 (944)
Q Consensus 448 ~~~al~l~P~~~~a~~~ 464 (944)
++++++++|++.++..-
T Consensus 94 ~~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 94 VRGLLQTEPQNNQAKEL 110 (152)
T ss_dssp HHHHHHHCTTCHHHHHH
T ss_pred HHHHHhcCCCCHHHHHH
Confidence 99999999999877653
No 247
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.42 E-value=1.3e-06 Score=74.54 Aligned_cols=73 Identities=15% Similarity=0.068 Sum_probs=61.8
Q ss_pred CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCh
Q 002273 387 KPNFSQSLNNLGVVYTVQGK---MDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSR 459 (944)
Q Consensus 387 ~p~~~~~~~~la~~~~~~g~---~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~ 459 (944)
+|++++.+..+|.+++..++ .++|...++++++.+|+++.+++.+|..+...|++++|+.+|+++++.+|+++
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 57788888888888876665 68888888888888888888888888888888999999999999888888843
No 248
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens}
Probab=98.36 E-value=6.1e-06 Score=79.79 Aligned_cols=136 Identities=15% Similarity=0.176 Sum_probs=91.1
Q ss_pred CCeEEEecCCCC-cCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHh
Q 002273 681 GFITFGSFNNLA-KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 759 (944)
Q Consensus 681 ~~~~f~~~~~~~-K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~ 759 (944)
..++|.++++.. ......+....+.+...|- ++++++++... .++ +++|.|.++++ ..+.+.
T Consensus 21 ~~~vlv~~Gs~~~~~~~~~~~~~~~al~~~~~-~~~~~~g~~~~-------------~~~-~~~v~~~~~~~-~~~~l~- 83 (170)
T 2o6l_A 21 NGVVVFSLGSMVSNMTEERANVIASALAQIPQ-KVLWRFDGNKP-------------DTL-GLNTRLYKWIP-QNDLLG- 83 (170)
T ss_dssp TCEEEEECCSCCTTCCHHHHHHHHHHHTTSSS-EEEEECCSSCC-------------TTC-CTTEEEESSCC-HHHHHT-
T ss_pred CCEEEEECCCCcccCCHHHHHHHHHHHHhCCC-eEEEEECCcCc-------------ccC-CCcEEEecCCC-HHHHhc-
Confidence 356677777763 4445556666666666664 44444433111 134 57899999987 455554
Q ss_pred cccccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccccC---CHHHHHHHHHHHhcCHHHHH
Q 002273 760 YSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQLASDVTALA 836 (944)
Q Consensus 760 ~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~---~~~~y~~~a~~l~~d~~~~~ 836 (944)
+..||+++- .+|++|++|||++|+|+|..+-... ...-+..+...|..-++.. |.++..+...++..|++.++
T Consensus 84 ~~~ad~~I~---~~G~~t~~Ea~~~G~P~i~~p~~~~-Q~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~ 159 (170)
T 2o6l_A 84 HPKTRAFIT---HGGANGIYEAIYHGIPMVGIPLFAD-QPDNIAHMKARGAAVRVDFNTMSSTDLLNALKRVINDPSYKE 159 (170)
T ss_dssp STTEEEEEE---CCCHHHHHHHHHHTCCEEECCCSTT-HHHHHHHHHTTTSEEECCTTTCCHHHHHHHHHHHHHCHHHHH
T ss_pred CCCcCEEEE---cCCccHHHHHHHcCCCEEeccchhh-HHHHHHHHHHcCCeEEeccccCCHHHHHHHHHHHHcCHHHHH
Confidence 488999994 3788999999999999999874311 1233556777787766542 78899999999999986433
Q ss_pred H
Q 002273 837 N 837 (944)
Q Consensus 837 ~ 837 (944)
+
T Consensus 160 ~ 160 (170)
T 2o6l_A 160 N 160 (170)
T ss_dssp H
T ss_pred H
Confidence 3
No 249
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.35 E-value=3.3e-06 Score=72.03 Aligned_cols=72 Identities=15% Similarity=0.060 Sum_probs=61.9
Q ss_pred CCCCHHHHHHHHHHHHHhCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 002273 78 DSGNVEAHIGKGICLQMQNM---GRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSY 149 (944)
Q Consensus 78 ~p~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 149 (944)
+|++++.+..+|.+++..++ .++|...++++++.+|+++.+++.+|..++..|+|++|+.+|+++++.+|..
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 57888888888888876665 6888888999999999998888888999999999999999999988888873
No 250
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.30 E-value=5.5e-06 Score=76.48 Aligned_cols=91 Identities=8% Similarity=-0.043 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhhC-C-CCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002273 340 DMAIVFYELAFHFNPHCAEACNNLGVIYKDRD---NLDKAVECYQMALSIK-P-NFSQSLNNLGVVYTVQGKMDAAAEMI 414 (944)
Q Consensus 340 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~l 414 (944)
..+.+.|.+.++.++.+.++.+++|.++.+.+ +.++++.+++..++.+ | +..++++++|..++++|+|++|++++
T Consensus 15 ~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 44555566666666666777777777777766 5557777777777776 5 45667777777777777777777777
Q ss_pred HHHHHhCCCCHHHHHH
Q 002273 415 EKAIAANPTYAEAYNN 430 (944)
Q Consensus 415 ~~al~~~p~~~~a~~~ 430 (944)
+++++.+|++..+...
T Consensus 95 ~~lL~ieP~n~QA~~L 110 (152)
T 1pc2_A 95 RGLLQTEPQNNQAKEL 110 (152)
T ss_dssp HHHHHHCTTCHHHHHH
T ss_pred HHHHhcCCCCHHHHHH
Confidence 7777777777665543
No 251
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus}
Probab=98.27 E-value=4.3e-06 Score=94.48 Aligned_cols=169 Identities=15% Similarity=0.159 Sum_probs=112.3
Q ss_pred CCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceE-EEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHH
Q 002273 679 TNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRL-VVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 757 (944)
Q Consensus 679 ~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l-~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~ 757 (944)
+++.++|.++.+..+...+.+....+.+...|+.++ |+.|.+.. .+.+ + .+ +++|.|.++++ ..
T Consensus 230 ~~~~~v~v~~Gs~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~~~----~~~l----~--~~-~~~v~~~~~~~-~~--- 294 (430)
T 2iyf_A 230 GAEKVVLVSLGSAFTKQPAFYRECVRAFGNLPGWHLVLQIGRKVT----PAEL----G--EL-PDNVEVHDWVP-QL--- 294 (430)
T ss_dssp TCSEEEEEECTTTCC-CHHHHHHHHHHHTTCTTEEEEEECC---C----GGGG----C--SC-CTTEEEESSCC-HH---
T ss_pred CCCCeEEEEcCCCCCCcHHHHHHHHHHHhcCCCeEEEEEeCCCCC----hHHh----c--cC-CCCeEEEecCC-HH---
Confidence 345678888888776566777777777766667666 45554311 1111 1 24 57999999876 22
Q ss_pred HhcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccccC---CHHHHHHHHHHHhcCHHH
Q 002273 758 QAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQLASDVTA 834 (944)
Q Consensus 758 ~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~---~~~~y~~~a~~l~~d~~~ 834 (944)
..|..+|+++- -+|++|++|||++|+|+|+.+-... ....+..+...|..-++.. |.++..+...++..|++.
T Consensus 295 ~~l~~ad~~v~---~~G~~t~~Ea~~~G~P~i~~p~~~~-q~~~a~~~~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~ 370 (430)
T 2iyf_A 295 AILRQADLFVT---HAGAGGSQEGLATATPMIAVPQAVD-QFGNADMLQGLGVARKLATEEATADLLRETALALVDDPEV 370 (430)
T ss_dssp HHHTTCSEEEE---CCCHHHHHHHHHTTCCEEECCCSHH-HHHHHHHHHHTTSEEECCCC-CCHHHHHHHHHHHHHCHHH
T ss_pred HHhhccCEEEE---CCCccHHHHHHHhCCCEEECCCccc-hHHHHHHHHHcCCEEEcCCCCCCHHHHHHHHHHHHcCHHH
Confidence 56788999884 3566899999999999999874311 1222445566677655543 789999999999999988
Q ss_pred HHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHH
Q 002273 835 LANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMW 869 (944)
Q Consensus 835 ~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ 869 (944)
++++++..++.... +..+..+..+|+.+++..
T Consensus 371 ~~~~~~~~~~~~~~---~~~~~~~~~i~~~~~~~~ 402 (430)
T 2iyf_A 371 ARRLRRIQAEMAQE---GGTRRAADLIEAELPARH 402 (430)
T ss_dssp HHHHHHHHHHHHHH---CHHHHHHHHHHTTSCC--
T ss_pred HHHHHHHHHHHHhc---CcHHHHHHHHHHHhhccc
Confidence 88877766654332 366777777777766544
No 252
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae}
Probab=98.25 E-value=9.1e-06 Score=90.33 Aligned_cols=145 Identities=13% Similarity=0.094 Sum_probs=100.1
Q ss_pred CCCeEEEecCC---CCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHH
Q 002273 680 NGFITFGSFNN---LAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 756 (944)
Q Consensus 680 ~~~~~f~~~~~---~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~ 756 (944)
++.+++.+.++ .-|..+.+++++.++.+..|+.++++..++ .+..++.+.+. .+. .++|.|.+..+ ..++
T Consensus 229 ~~~~vlv~~hR~~~~~~~~~~ll~A~~~l~~~~~~~~~v~~~g~--~~~~~~~l~~~---~~~-~~~v~~~~~lg-~~~~ 301 (396)
T 3dzc_A 229 SKKLILVTGHRRESFGGGFERICQALITTAEQHPECQILYPVHL--NPNVREPVNKL---LKG-VSNIVLIEPQQ-YLPF 301 (396)
T ss_dssp TSEEEEEECSCBCCCTTHHHHHHHHHHHHHHHCTTEEEEEECCB--CHHHHHHHHHH---TTT-CTTEEEECCCC-HHHH
T ss_pred CCCEEEEEECCcccchhHHHHHHHHHHHHHHhCCCceEEEEeCC--ChHHHHHHHHH---HcC-CCCEEEeCCCC-HHHH
Confidence 44555556644 235457899999999988999888875332 13455555443 244 46899988875 5789
Q ss_pred HHhcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhcCHHHHH
Q 002273 757 MQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALA 836 (944)
Q Consensus 757 ~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~l~~d~~~~~ 836 (944)
...|..||+++-++ | ++++||+++|+|||+.... .+|. .+ ...|-.-+|..|.++.++...+|.+|++.++
T Consensus 302 ~~l~~~ad~vv~~S---G-g~~~EA~a~G~PvV~~~~~--~~~~--e~-v~~G~~~lv~~d~~~l~~ai~~ll~d~~~~~ 372 (396)
T 3dzc_A 302 VYLMDRAHIILTDS---G-GIQEEAPSLGKPVLVMRET--TERP--EA-VAAGTVKLVGTNQQQICDALSLLLTDPQAYQ 372 (396)
T ss_dssp HHHHHHCSEEEESC---S-GGGTTGGGGTCCEEECCSS--CSCH--HH-HHHTSEEECTTCHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHhcCEEEECC---c-cHHHHHHHcCCCEEEccCC--Ccch--HH-HHcCceEEcCCCHHHHHHHHHHHHcCHHHHH
Confidence 99999999997443 4 4449999999999985321 1221 12 2336555566689999999999999998777
Q ss_pred HHHH
Q 002273 837 NLRM 840 (944)
Q Consensus 837 ~~r~ 840 (944)
++++
T Consensus 373 ~m~~ 376 (396)
T 3dzc_A 373 AMSQ 376 (396)
T ss_dssp HHHT
T ss_pred HHhh
Confidence 6665
No 253
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=98.25 E-value=4.1e-06 Score=93.31 Aligned_cols=146 Identities=16% Similarity=0.198 Sum_probs=102.2
Q ss_pred CCCCeEEEecCCC---CcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHH
Q 002273 679 TNGFITFGSFNNL---AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHD 755 (944)
Q Consensus 679 ~~~~~~f~~~~~~---~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~ 755 (944)
+++.+++.+.++. -|..+.+++++.++.+..|+.++++..++ .+..++.+.+. .+. .++|.|.+... ..+
T Consensus 222 ~~~~~vlv~~~r~~~~~~~l~~ll~a~~~l~~~~~~~~~v~~~~~--~~~~~~~l~~~---~~~-~~~v~l~~~l~-~~~ 294 (403)
T 3ot5_A 222 GDNRLILMTAHRRENLGEPMQGMFEAVREIVESREDTELVYPMHL--NPAVREKAMAI---LGG-HERIHLIEPLD-AID 294 (403)
T ss_dssp TTCEEEEECCCCHHHHTTHHHHHHHHHHHHHHHCTTEEEEEECCS--CHHHHHHHHHH---HTT-CTTEEEECCCC-HHH
T ss_pred cCCCEEEEEeCcccccCcHHHHHHHHHHHHHHhCCCceEEEecCC--CHHHHHHHHHH---hCC-CCCEEEeCCCC-HHH
Confidence 4455667777763 24447899999999999999888876433 22344444433 344 36899999876 578
Q ss_pred HHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhcCHHHH
Q 002273 756 HMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTAL 835 (944)
Q Consensus 756 ~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~l~~d~~~~ 835 (944)
+...|..||+++-.+ ||.+ +||+++|+|||+.+-. .+|.- +. ..|-.-+|..|.++.++...+|..|++.+
T Consensus 295 ~~~l~~~ad~vv~~S---Gg~~-~EA~a~g~PvV~~~~~--~~~~e--~v-~~g~~~lv~~d~~~l~~ai~~ll~~~~~~ 365 (403)
T 3ot5_A 295 FHNFLRKSYLVFTDS---GGVQ-EEAPGMGVPVLVLRDT--TERPE--GI-EAGTLKLIGTNKENLIKEALDLLDNKESH 365 (403)
T ss_dssp HHHHHHHEEEEEECC---HHHH-HHGGGTTCCEEECCSS--CSCHH--HH-HHTSEEECCSCHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHhcCEEEECC---ccHH-HHHHHhCCCEEEecCC--Ccchh--he-eCCcEEEcCCCHHHHHHHHHHHHcCHHHH
Confidence 999999999997432 4444 9999999999997421 12221 12 34644455569999999999999999887
Q ss_pred HHHHH
Q 002273 836 ANLRM 840 (944)
Q Consensus 836 ~~~r~ 840 (944)
+++++
T Consensus 366 ~~m~~ 370 (403)
T 3ot5_A 366 DKMAQ 370 (403)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 77654
No 254
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.18 E-value=1.3e-05 Score=70.15 Aligned_cols=78 Identities=13% Similarity=0.083 Sum_probs=65.8
Q ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHH
Q 002273 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKD-------SGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACA 118 (944)
Q Consensus 46 ~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 118 (944)
.++...+.+|..++..|+|..|+..|+++++.. +....++..+|.++.++|++++|+..++++++++|++..+
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 467888999999999999999999999998853 2457788888999999999999999999998888888887
Q ss_pred HHHHH
Q 002273 119 HTHCG 123 (944)
Q Consensus 119 ~~~la 123 (944)
..+++
T Consensus 83 ~~n~~ 87 (104)
T 2v5f_A 83 NGNLK 87 (104)
T ss_dssp HHHHH
T ss_pred HhhHH
Confidence 76665
No 255
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.18 E-value=1.4e-05 Score=69.90 Aligned_cols=74 Identities=23% Similarity=0.251 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 002273 358 EACNNLGVIYKDRDNLDKAVECYQMALSIK-------PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 430 (944)
Q Consensus 358 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~ 430 (944)
.-++.+|..++..++|..|+.+|++|++.. +....++..+|.++.++|++++|+.++++++++.|++..+..+
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n 85 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence 344455555555555555555555555431 1223344444444444444444444444444444444444443
Q ss_pred H
Q 002273 431 L 431 (944)
Q Consensus 431 l 431 (944)
+
T Consensus 86 ~ 86 (104)
T 2v5f_A 86 L 86 (104)
T ss_dssp H
T ss_pred H
Confidence 3
No 256
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.16 E-value=4.9e-06 Score=92.93 Aligned_cols=93 Identities=14% Similarity=0.112 Sum_probs=75.4
Q ss_pred HCCCHHHHHHHHHHHHhh-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHH
Q 002273 369 DRDNLDKAVECYQMALSI-----KPNFS---QSLNNLGVVYTVQGKMDAAAEMIEKAIAA--------NPTYAEAYNNLG 432 (944)
Q Consensus 369 ~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~la~~~~~~g~~~~A~~~l~~al~~--------~p~~~~a~~~la 432 (944)
..|+|++|+..|++++++ .|+++ .++.++|.+|..+|+|++|+.++++++++ +|+....+++||
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457899999999999876 45554 47888999999999999999999999876 344456788999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhh-----CCCChhh
Q 002273 433 VLYRDAGSISLAIDAYEQCLKI-----DPDSRNA 461 (944)
Q Consensus 433 ~~~~~~g~~~eA~~~~~~al~l-----~P~~~~a 461 (944)
.+|..+|++++|+..|++|+++ -|+++..
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 9999999999999999999875 4666544
No 257
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.15 E-value=5.2e-06 Score=92.93 Aligned_cols=88 Identities=9% Similarity=0.018 Sum_probs=47.8
Q ss_pred HHHcCChHHHHHHHHHHHhh-----CCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----CCCCH---HHHHH
Q 002273 333 YGEMLKFDMAIVFYELAFHF-----NPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSI-----KPNFS---QSLNN 396 (944)
Q Consensus 333 ~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~ 396 (944)
+...|++++|+..+++++++ .|++ ...+.++|.+|..+|+|++|+.++++++++ .|+++ ..+++
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 34455666666666666554 2222 345555566666666666666666665544 23332 34555
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Q 002273 397 LGVVYTVQGKMDAAAEMIEKAIAA 420 (944)
Q Consensus 397 la~~~~~~g~~~~A~~~l~~al~~ 420 (944)
+|.+|..+|++++|+.+|++|+++
T Consensus 377 La~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 377 VGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHH
Confidence 666666666666666666665553
No 258
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.15 E-value=9.3e-06 Score=90.65 Aligned_cols=95 Identities=13% Similarity=-0.021 Sum_probs=79.8
Q ss_pred HHcCChHHHHHHHHHHHhh-----CCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----CCCCH---HHHHHH
Q 002273 334 GEMLKFDMAIVFYELAFHF-----NPHC---AEACNNLGVIYKDRDNLDKAVECYQMALSI-----KPNFS---QSLNNL 397 (944)
Q Consensus 334 ~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~---~~~~~l 397 (944)
...|+|++|+..|++++++ .|++ ...+.++|.+|..+|+|++|+.++++++++ .|+++ ..+++|
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 3568999999999999986 4444 567889999999999999999999999976 35554 578999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHH
Q 002273 398 GVVYTVQGKMDAAAEMIEKAIAA-----NPTYAEAY 428 (944)
Q Consensus 398 a~~~~~~g~~~~A~~~l~~al~~-----~p~~~~a~ 428 (944)
|.+|..+|++++|+.+|++|+++ .|+++.+.
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 99999999999999999999986 56665543
No 259
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=98.12 E-value=4.6e-05 Score=85.01 Aligned_cols=163 Identities=15% Similarity=0.049 Sum_probs=102.6
Q ss_pred CCCCCeEEEecCCCCc--CCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHH
Q 002273 678 LTNGFITFGSFNNLAK--ITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHD 755 (944)
Q Consensus 678 ~~~~~~~f~~~~~~~K--~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~ 755 (944)
.++..++|.+|.+... .....+....+.+...+--++|..+.... ...+--+++|.+.++++ +.+
T Consensus 234 ~~~~~~v~vs~Gs~~~~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~~------------~~~~~~~~~v~~~~~~p-~~~ 300 (400)
T 4amg_A 234 AAGRRRIAVTLGSIDALSGGIAKLAPLFSEVADVDAEFVLTLGGGDL------------ALLGELPANVRVVEWIP-LGA 300 (400)
T ss_dssp CTTCCEEEECCCSCC--CCSSSTTHHHHHHGGGSSSEEEEECCTTCC------------CCCCCCCTTEEEECCCC-HHH
T ss_pred cCCCcEEEEeCCcccccCccHHHHHHHHHHhhccCceEEEEecCccc------------cccccCCCCEEEEeecC-HHH
Confidence 3456677888876533 33455666667777776666665543211 11122268999998876 444
Q ss_pred HHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhcCHHHH
Q 002273 756 HMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTAL 835 (944)
Q Consensus 756 ~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~l~~d~~~~ 835 (944)
.+..+|+|+ ..+|.+|++|||++|||+|++|-..- ...-+..+...|+.-.+. +.+.-.+...++.+|++.+
T Consensus 301 ---lL~~~~~~v---~h~G~~s~~Eal~~GvP~v~~P~~~d-Q~~na~~v~~~G~g~~l~-~~~~~~~al~~lL~d~~~r 372 (400)
T 4amg_A 301 ---LLETCDAII---HHGGSGTLLTALAAGVPQCVIPHGSY-QDTNRDVLTGLGIGFDAE-AGSLGAEQCRRLLDDAGLR 372 (400)
T ss_dssp ---HHTTCSEEE---ECCCHHHHHHHHHHTCCEEECCC----CHHHHHHHHHHTSEEECC-TTTCSHHHHHHHHHCHHHH
T ss_pred ---Hhhhhhhee---ccCCccHHHHHHHhCCCEEEecCccc-HHHHHHHHHHCCCEEEcC-CCCchHHHHHHHHcCHHHH
Confidence 456799987 25788899999999999999874321 223345566677764443 2222344566788999877
Q ss_pred HHHHHHHHHHhhcCCCCChHHHHHHHHHH
Q 002273 836 ANLRMSLRDLMSKSPVCDGQNFALGLEST 864 (944)
Q Consensus 836 ~~~r~~~~~~~~~~~~~~~~~~~~~~e~~ 864 (944)
++.+ ++++.+...+ .+...++.||+.
T Consensus 373 ~~a~-~l~~~~~~~~--~~~~~a~~le~l 398 (400)
T 4amg_A 373 EAAL-RVRQEMSEMP--PPAETAAXLVAL 398 (400)
T ss_dssp HHHH-HHHHHHHTSC--CHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHcCC--CHHHHHHHHHHh
Confidence 6654 4555565554 678888888864
No 260
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae}
Probab=98.09 E-value=5.2e-05 Score=84.08 Aligned_cols=163 Identities=13% Similarity=0.072 Sum_probs=102.8
Q ss_pred CCCeEEEecCCCCcC-----CHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcH
Q 002273 680 NGFITFGSFNNLAKI-----TPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNH 754 (944)
Q Consensus 680 ~~~~~f~~~~~~~K~-----~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~ 754 (944)
+..++|.++++.... ....+....+.+... +.++++..++ ...+.+. . + +++|.+ ++++ ..
T Consensus 209 ~~~~v~v~~Gs~~~~~~~~~~~~~~~~~~~al~~~-~~~~~~~~g~----~~~~~l~----~--~-~~~v~~-~~~~-~~ 274 (384)
T 2p6p_A 209 TRQRVLVTSGSRVAKESYDRNFDFLRGLAKDLVRW-DVELIVAAPD----TVAEALR----A--E-VPQARV-GWTP-LD 274 (384)
T ss_dssp SSCEEEEECSSSSSCCSSCCCCTTHHHHHHHHHTT-TCEEEEECCH----HHHHHHH----H--H-CTTSEE-ECCC-HH
T ss_pred CCCEEEEECCCCCccccccccHHHHHHHHHHHhcC-CcEEEEEeCC----CCHHhhC----C--C-CCceEE-cCCC-HH
Confidence 345677888776543 233344333444443 5666665432 2222222 2 3 578999 8875 34
Q ss_pred HHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccccC---CHHHHHHHHHHHhcC
Q 002273 755 DHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQLASD 831 (944)
Q Consensus 755 ~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~---~~~~y~~~a~~l~~d 831 (944)
+ .+..||+++-. +|++|++|||++|||+|+++-..-. ...+..+...|..-++.. |.++..+...++..|
T Consensus 275 ~---~l~~~d~~v~~---~G~~t~~Ea~~~G~P~v~~p~~~dq-~~~a~~~~~~g~g~~~~~~~~~~~~l~~~i~~ll~~ 347 (384)
T 2p6p_A 275 V---VAPTCDLLVHH---AGGVSTLTGLSAGVPQLLIPKGSVL-EAPARRVADYGAAIALLPGEDSTEAIADSCQELQAK 347 (384)
T ss_dssp H---HGGGCSEEEEC---SCTTHHHHHHHTTCCEEECCCSHHH-HHHHHHHHHHTSEEECCTTCCCHHHHHHHHHHHHHC
T ss_pred H---HHhhCCEEEeC---CcHHHHHHHHHhCCCEEEccCcccc-hHHHHHHHHCCCeEecCcCCCCHHHHHHHHHHHHcC
Confidence 4 45789999953 6677999999999999998752111 223445566677665542 788998888899999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 002273 832 VTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 866 (944)
Q Consensus 832 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 866 (944)
++.++++++..++. ...+ ..++.+..+|+...
T Consensus 348 ~~~~~~~~~~~~~~-~~~~--~~~~~~~~i~~~~~ 379 (384)
T 2p6p_A 348 DTYARRAQDLSREI-SGMP--LPATVVTALEQLAH 379 (384)
T ss_dssp HHHHHHHHHHHHHH-HTSC--CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HhCC--CHHHHHHHHHHHhh
Confidence 98888777655544 3232 56677777666543
No 261
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.03 E-value=0.00055 Score=78.23 Aligned_cols=160 Identities=11% Similarity=0.001 Sum_probs=87.6
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhC---------CHHHHHHHHHHHHhcC-CCCHHHHH
Q 002273 52 LSYANILRSRNKFVDALALYEIVLEKDS-GNVEAHIGKGICLQMQN---------MGRLAFDSFSEAVKLD-PQNACAHT 120 (944)
Q Consensus 52 ~~~A~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g---------~~~~A~~~~~~al~~~-p~~~~~~~ 120 (944)
...-..+.+.|++++|+++|+++.+..- -+...|..+..++...+ ..++|.+.|+++.+.. .-+...|.
T Consensus 30 ~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn 109 (501)
T 4g26_A 30 KQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFT 109 (501)
T ss_dssp HHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 3344566677777777777777766532 24555555555544333 2456666666655432 12445566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC-CCHHHHHHH
Q 002273 121 HCGILYKDEGRLVEAAESYHKALSAD--PSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP-HYAPAYYNL 197 (944)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l 197 (944)
.+...|.+.|++++|.+.|++..+.. |+ ...|..+...+.+.|+.++|.++|+++.+..- -+...|..+
T Consensus 110 ~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd--------~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~L 181 (501)
T 4g26_A 110 NGARLAVAKDDPEMAFDMVKQMKAFGIQPR--------LRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAAL 181 (501)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHTTCCCC--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCc--------cceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 66666666666666666666655432 22 11244444455555666666666655554421 134455555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 002273 198 GVVYSELMQYDTALGCYEKAAL 219 (944)
Q Consensus 198 a~~~~~~g~~~~A~~~~~~al~ 219 (944)
...|.+.|+.++|.+++++..+
T Consensus 182 i~~~~~~g~~d~A~~ll~~Mr~ 203 (501)
T 4g26_A 182 LKVSMDTKNADKVYKTLQRLRD 203 (501)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhCCCHHHHHHHHHHHHH
Confidence 5555556666666655555544
No 262
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.02 E-value=1.5e-05 Score=89.14 Aligned_cols=98 Identities=12% Similarity=0.062 Sum_probs=82.6
Q ss_pred HHHHHCCCHHHHHHHHHHHHhh-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHH
Q 002273 365 VIYKDRDNLDKAVECYQMALSI-----KPNF---SQSLNNLGVVYTVQGKMDAAAEMIEKAIAA--------NPTYAEAY 428 (944)
Q Consensus 365 ~~~~~~g~~~~A~~~~~~al~~-----~p~~---~~~~~~la~~~~~~g~~~~A~~~l~~al~~--------~p~~~~a~ 428 (944)
.-+..+|++++|+..+++++++ .|++ ..++.++|.+|..+|+|++|+.+++++++. +|+....+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 3455789999999999999976 3455 458899999999999999999999999976 33445679
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCChhhh
Q 002273 429 NNLGVLYRDAGSISLAIDAYEQCLKI-----DPDSRNAG 462 (944)
Q Consensus 429 ~~la~~~~~~g~~~eA~~~~~~al~l-----~P~~~~a~ 462 (944)
++||.+|..+|++++|+.+|++|+++ -|+++...
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 413 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIE 413 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence 99999999999999999999999985 56766544
No 263
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.97 E-value=0.00062 Score=77.83 Aligned_cols=156 Identities=10% Similarity=0.049 Sum_probs=130.9
Q ss_pred HhhhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC---------hHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Q 002273 298 LVKLEGDINQGVAYYKKALYYN-WHYADAMYNLGVAYGEMLK---------FDMAIVFYELAFHFN-PHCAEACNNLGVI 366 (944)
Q Consensus 298 l~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~---------~~~A~~~~~~al~~~-p~~~~~~~~la~~ 366 (944)
.+.+.|++++|+++|+++.+.. .-+...|..+-.++...+. .++|.++|++..... .-+...|..+...
T Consensus 35 ~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~ 114 (501)
T 4g26_A 35 MCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARL 114 (501)
T ss_dssp HTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 4677899999999999998764 3356778777777766554 688999999988763 3358889999999
Q ss_pred HHHCCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHH
Q 002273 367 YKDRDNLDKAVECYQMALSIK-PNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAAN--PTYAEAYNNLGVLYRDAGSISL 443 (944)
Q Consensus 367 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~--p~~~~a~~~la~~~~~~g~~~e 443 (944)
|.+.|+.++|.++|++..+.. .-+...|..+-..|.+.|+.++|.++|++..+.. |+ ...|..+...|.+.|+.++
T Consensus 115 ~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd-~~ty~~Li~~~~~~g~~d~ 193 (501)
T 4g26_A 115 AVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPE-EPELAALLKVSMDTKNADK 193 (501)
T ss_dssp HHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHTTCHHH
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhhCCCHHH
Confidence 999999999999999988763 2357889999999999999999999999998863 44 7789999999999999999
Q ss_pred HHHHHHHHHhh
Q 002273 444 AIDAYEQCLKI 454 (944)
Q Consensus 444 A~~~~~~al~l 454 (944)
|.+.+++..+.
T Consensus 194 A~~ll~~Mr~~ 204 (501)
T 4g26_A 194 VYKTLQRLRDL 204 (501)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999988664
No 264
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=97.91 E-value=8.6e-06 Score=89.80 Aligned_cols=324 Identities=13% Similarity=0.066 Sum_probs=172.2
Q ss_pred CcEEEeecCCCccCcHHHHHHhhhhhccCCcEEEEEEeccccCC-hhhHHHHHHHh-hhCCceEeccCCC--------HH
Q 002273 510 PLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKAD-AKTIRFREKVM-KKGGIWRDIYGID--------EK 579 (944)
Q Consensus 510 ~lriGy~S~d~~~h~v~~~~~~~l~~~d~~~fev~~y~~~~~~d-~~t~~~~~~~~-~~~~~~~~~~~~~--------~~ 579 (944)
-+++..+.+ ..|-...+.+++...+.. ||+.+..++..-| ...+.+...+. ...+...++.+-+ -.
T Consensus 9 ~~~~~~v~G---tRpe~~k~~p~~~~l~~~-~~~~~~~tgqh~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~ 84 (385)
T 4hwg_A 9 MLKVMTIVG---TRPELIKLCCVISEFDKH-TKHILVHTGQNYAYELNQVFFDDMGIRKPDYFLEVAADNTAKSIGLVIE 84 (385)
T ss_dssp CCEEEEEEC---SHHHHHHHHHHHHHHHHH-SEEEEEECSCHHHHHHTHHHHC-CCCCCCSEECCCCCCCSHHHHHHHHH
T ss_pred hhheeEEEE---cCHhHHHHHHHHHHHHhc-CCEEEEEeCCCCChhHHHHHHhhCCCCCCceecCCCCCCHHHHHHHHHH
Confidence 356666643 445555566666555433 8888887775533 22222221110 0123333332222 23
Q ss_pred HHHHHhHhCCccEEEecCCCCCCCchhhhc-cCCcceeeecccCCCCCCCCCccE------------EEecCCCCCccc-
Q 002273 580 KVAAMVREDKIDILVELTGHTANNKLGMMA-CQPAPVQVTWIGYPNTTGLPTIDY------------RITDSLADPPET- 645 (944)
Q Consensus 580 ~~a~~i~~d~idilvdl~g~t~~~~~~~~a-~r~ApvQ~~~~G~p~t~g~~~~Dy------------~i~d~~~~p~~~- 645 (944)
++.+.+++.++|++|=.++.+..-. .+.| .+=-|| +..-| |+.+.|- .++|-++.|.+.
T Consensus 85 ~l~~~l~~~kPD~Vlv~gd~~~~~a-alaA~~~~IPv-~h~ea-----glrs~~~~~pee~nR~~~~~~a~~~~~~te~~ 157 (385)
T 4hwg_A 85 KVDEVLEKEKPDAVLFYGDTNSCLS-AIAAKRRKIPI-FHMEA-----GNRCFDQRVPEEINRKIIDHISDVNITLTEHA 157 (385)
T ss_dssp HHHHHHHHHCCSEEEEESCSGGGGG-HHHHHHTTCCE-EEESC-----CCCCSCTTSTHHHHHHHHHHHCSEEEESSHHH
T ss_pred HHHHHHHhcCCcEEEEECCchHHHH-HHHHHHhCCCE-EEEeC-----CCccccccCcHHHHHHHHHhhhceeecCCHHH
Confidence 4677888999999986544332221 2222 222344 22222 2222220 122333333322
Q ss_pred cccc------ccceEEcCCCccc---cC-CCCCCCCCCCCCCCCCCCeEEEecCCCC-----cCCHHHHHHHHHHHhHcC
Q 002273 646 KQKH------VEELIRLPECFLC---YT-PSPEAGPVCPTPALTNGFITFGSFNNLA-----KITPKVLQVWARILCAVP 710 (944)
Q Consensus 646 ~~~~------~e~~~~lp~~~~~---~~-~~~~~~~~~~~~~~~~~~~~f~~~~~~~-----K~~~~~~~~~~~il~~~p 710 (944)
...+ .|++....+..+. +. +...........+++.+.+++.+..+.. |..+.+++++.++.+..
T Consensus 158 ~~~l~~~G~~~~~I~vtGnp~~D~~~~~~~~~~~~~~~~~lgl~~~~~iLvt~hr~e~~~~~~~l~~ll~al~~l~~~~- 236 (385)
T 4hwg_A 158 RRYLIAEGLPAELTFKSGSHMPEVLDRFMPKILKSDILDKLSLTPKQYFLISSHREENVDVKNNLKELLNSLQMLIKEY- 236 (385)
T ss_dssp HHHHHHTTCCGGGEEECCCSHHHHHHHHHHHHHHCCHHHHTTCCTTSEEEEEECCC-----CHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHcCCCcCcEEEECCchHHHHHHhhhhcchhHHHHHcCCCcCCEEEEEeCCchhcCcHHHHHHHHHHHHHHHhcC-
Confidence 1111 3556666554322 10 0001111112234444566677777643 44467888888888765
Q ss_pred CceEEEecCCCCCHHHHHHHHHHHHHc-C-CC-CCcEEEccCccCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCc
Q 002273 711 NSRLVVKCKPFCCDSVRHRFLSTLEQL-G-LE-SLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVP 787 (944)
Q Consensus 711 ~~~l~~~~~~~~~~~~~~~~~~~~~~~-g-i~-~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvP 787 (944)
+..+++...+ . +++.+++. | +. .++|.+.+... ..++...+..||+++-.. || .+.||+++|+|
T Consensus 237 ~~~vv~p~~p----~----~~~~l~~~~~~~~~~~~v~l~~~lg-~~~~~~l~~~adlvvt~S---Gg-v~~EA~alG~P 303 (385)
T 4hwg_A 237 NFLIIFSTHP----R----TKKRLEDLEGFKELGDKIRFLPAFS-FTDYVKLQMNAFCILSDS---GT-ITEEASILNLP 303 (385)
T ss_dssp CCEEEEEECH----H----HHHHHHTSGGGGGTGGGEEECCCCC-HHHHHHHHHHCSEEEECC---TT-HHHHHHHTTCC
T ss_pred CeEEEEECCh----H----HHHHHHHHHHHhcCCCCEEEEcCCC-HHHHHHHHHhCcEEEECC---cc-HHHHHHHcCCC
Confidence 6666654332 3 44555555 5 42 36899988765 568999999999998322 44 57999999999
Q ss_pred EEecCCCcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 002273 788 CVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTY 865 (944)
Q Consensus 788 vvt~~g~~~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~ 865 (944)
||+++..+ .|.- . ...|-.-+|..|.++.++....|.+|+..++.+++...... ..-...++.++.++..+
T Consensus 304 vv~~~~~t--er~e--~-v~~G~~~lv~~d~~~i~~ai~~ll~d~~~~~~m~~~~~~~~--g~g~aa~rI~~~l~~~~ 374 (385)
T 4hwg_A 304 ALNIREAH--ERPE--G-MDAGTLIMSGFKAERVLQAVKTITEEHDNNKRTQGLVPDYN--EAGLVSKKILRIVLSYV 374 (385)
T ss_dssp EEECSSSC--SCTH--H-HHHTCCEECCSSHHHHHHHHHHHHTTCBTTBCCSCCCHHHH--TCCCHHHHHHHHHHHHH
T ss_pred EEEcCCCc--cchh--h-hhcCceEEcCCCHHHHHHHHHHHHhChHHHHHhhccCCCCC--CCChHHHHHHHHHHHHh
Confidence 99986532 1222 1 23365556667999999999999999876655543332210 11123556666666654
No 265
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus}
Probab=97.91 E-value=0.00017 Score=81.09 Aligned_cols=164 Identities=13% Similarity=0.103 Sum_probs=106.6
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEE-ecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHH
Q 002273 680 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVV-KCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 758 (944)
Q Consensus 680 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~-~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 758 (944)
++.++|.++.+......+.+....+.+.. ++.++++ .|.+... +.+ ..+ +++|.+.++++ +. .
T Consensus 254 ~~~~v~v~~Gs~~~~~~~~~~~~~~al~~-~~~~~~~~~g~~~~~----~~~------~~~-~~~v~~~~~~~-~~---~ 317 (424)
T 2iya_A 254 GRPVLLIALGSAFTDHLDFYRTCLSAVDG-LDWHVVLSVGRFVDP----ADL------GEV-PPNVEVHQWVP-QL---D 317 (424)
T ss_dssp SCCEEEEECCSSSCCCHHHHHHHHHHHTT-CSSEEEEECCTTSCG----GGG------CSC-CTTEEEESSCC-HH---H
T ss_pred CCCEEEEEcCCCCcchHHHHHHHHHHHhc-CCcEEEEEECCcCCh----HHh------ccC-CCCeEEecCCC-HH---H
Confidence 45677888887765556666655555554 4555544 4432111 111 123 57899999876 22 5
Q ss_pred hcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccccC---CHHHHHHHHHHHhcCHHHH
Q 002273 759 AYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQLASDVTAL 835 (944)
Q Consensus 759 ~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~---~~~~y~~~a~~l~~d~~~~ 835 (944)
.+..+|+++- -+|.+|++||+++|||+|+++-..- ...-+..+...|..-.+.. |.++..+...++.+|++.+
T Consensus 318 ~l~~~d~~v~---~~G~~t~~Ea~~~G~P~i~~p~~~d-Q~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll~~~~~~ 393 (424)
T 2iya_A 318 ILTKASAFIT---HAGMGSTMEALSNAVPMVAVPQIAE-QTMNAERIVELGLGRHIPRDQVTAEKLREAVLAVASDPGVA 393 (424)
T ss_dssp HHTTCSEEEE---CCCHHHHHHHHHTTCCEEECCCSHH-HHHHHHHHHHTTSEEECCGGGCCHHHHHHHHHHHHHCHHHH
T ss_pred HHhhCCEEEE---CCchhHHHHHHHcCCCEEEecCccc-hHHHHHHHHHCCCEEEcCcCCCCHHHHHHHHHHHHcCHHHH
Confidence 6778999884 3667899999999999999885321 2334555667787665542 8889999999999999877
Q ss_pred HHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 002273 836 ANLRMSLRDLMSKSPVCDGQNFALGLESTYR 866 (944)
Q Consensus 836 ~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 866 (944)
+++++..+.. .. .......+..+|+..+
T Consensus 394 ~~~~~~~~~~-~~--~~~~~~~~~~i~~~~~ 421 (424)
T 2iya_A 394 ERLAAVRQEI-RE--AGGARAAADILEGILA 421 (424)
T ss_dssp HHHHHHHHHH-HT--SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-Hh--cCcHHHHHHHHHHHHh
Confidence 7666544433 22 2345667777776653
No 266
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Probab=97.83 E-value=0.00011 Score=83.13 Aligned_cols=160 Identities=10% Similarity=0.035 Sum_probs=103.7
Q ss_pred CCCeEEEecCCC-------CcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccC
Q 002273 680 NGFITFGSFNNL-------AKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILL 752 (944)
Q Consensus 680 ~~~~~f~~~~~~-------~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~ 752 (944)
+..++|.++.+. .|....+++.+.+ . +.++++.+++.. .+.+ . ++ +++|.+.++++
T Consensus 266 ~~~~v~v~~Gs~~~~~~~~~~~~~~~~~al~~----~-~~~~v~~~g~~~----~~~l----~--~~-~~~v~~~~~~~- 328 (441)
T 2yjn_A 266 ERRRVCLTLGISSRENSIGQVSIEELLGAVGD----V-DAEIIATFDAQQ----LEGV----A--NI-PDNVRTVGFVP- 328 (441)
T ss_dssp SSCEEEEEC----------CCSTTTTHHHHHT----S-SSEEEECCCTTT----TSSC----S--SC-CSSEEECCSCC-
T ss_pred CCCEEEEECCCCcccccChHHHHHHHHHHHHc----C-CCEEEEEECCcc----hhhh----c--cC-CCCEEEecCCC-
Confidence 345556666644 3555556655443 2 456666544311 1111 1 34 57999999876
Q ss_pred cHHHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccccC---CHHHHHHHHHHHh
Q 002273 753 NHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQLA 829 (944)
Q Consensus 753 ~~~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~---~~~~y~~~a~~l~ 829 (944)
.. ..+..||+++- -+|++|++|||++|||+|.++-... ...-+..+...|..-.+.. |.++..+...++.
T Consensus 329 ~~---~ll~~ad~~V~---~~G~~t~~Ea~~~G~P~i~~p~~~d-Q~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~ll 401 (441)
T 2yjn_A 329 MH---ALLPTCAATVH---HGGPGSWHTAAIHGVPQVILPDGWD-TGVRAQRTQEFGAGIALPVPELTPDQLRESVKRVL 401 (441)
T ss_dssp HH---HHGGGCSEEEE---CCCHHHHHHHHHTTCCEEECCCSHH-HHHHHHHHHHHTSEEECCTTTCCHHHHHHHHHHHH
T ss_pred HH---HHHhhCCEEEE---CCCHHHHHHHHHhCCCEEEeCCccc-HHHHHHHHHHcCCEEEcccccCCHHHHHHHHHHHh
Confidence 33 34688999994 3677899999999999999875221 1233455667787766653 7889999999999
Q ss_pred cCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHH
Q 002273 830 SDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYR 866 (944)
Q Consensus 830 ~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~ 866 (944)
+|++.++++++..++.. . ....+..+..+|+...
T Consensus 402 ~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~i~~~~~ 435 (441)
T 2yjn_A 402 DDPAHRAGAARMRDDML-A--EPSPAEVVGICEELAA 435 (441)
T ss_dssp HCHHHHHHHHHHHHHHH-T--SCCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHH-c--CCCHHHHHHHHHHHHH
Confidence 99988888776655443 2 2467888888887654
No 267
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.78 E-value=9.6e-05 Score=65.53 Aligned_cols=91 Identities=12% Similarity=0.031 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHHcCCHHHHHHH
Q 002273 373 LDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDA---AAEMIEKAIAAN-P-TYAEAYNNLGVLYRDAGSISLAIDA 447 (944)
Q Consensus 373 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~---A~~~l~~al~~~-p-~~~~a~~~la~~~~~~g~~~eA~~~ 447 (944)
...+.+.|.+....++...++.+++|+++.+..+... ++.+++..+..+ | ..-+.++.||..+.++|+|++|..+
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3455566666666666677777777777777666555 777777776665 4 3456777788888888888888888
Q ss_pred HHHHHhhCCCChhhhh
Q 002273 448 YEQCLKIDPDSRNAGQ 463 (944)
Q Consensus 448 ~~~al~l~P~~~~a~~ 463 (944)
++.+|+..|++.++..
T Consensus 97 ~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 97 VRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHHHCTTCHHHHH
T ss_pred HHHHHHhCCCCHHHHH
Confidence 8888888887776654
No 268
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=97.75 E-value=0.00025 Score=79.44 Aligned_cols=158 Identities=9% Similarity=-0.010 Sum_probs=97.8
Q ss_pred CeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcc
Q 002273 682 FITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYS 761 (944)
Q Consensus 682 ~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~ 761 (944)
.++|.++++.. .....++...+.+...+--.+|+.|.+... ..++ +++|.+.++++ ..+ .+.
T Consensus 239 ~~v~v~~Gs~~-~~~~~~~~~~~al~~~~~~~v~~~g~~~~~------------~~~~-~~~v~~~~~~~-~~~---~l~ 300 (415)
T 1iir_A 239 PPVYLGFGSLG-APADAVRVAIDAIRAHGRRVILSRGWADLV------------LPDD-GADCFAIGEVN-HQV---LFG 300 (415)
T ss_dssp CCEEEECC----CCHHHHHHHHHHHHHTTCCEEECTTCTTCC------------CSSC-GGGEEECSSCC-HHH---HGG
T ss_pred CeEEEeCCCCC-CcHHHHHHHHHHHHHCCCeEEEEeCCCccc------------ccCC-CCCEEEeCcCC-hHH---HHh
Confidence 45677777664 445666666666666664444444433110 0233 57899999986 333 468
Q ss_pred cccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccccC---CHHHHHHHHHHHhcCHHHHHHH
Q 002273 762 LMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQLASDVTALANL 838 (944)
Q Consensus 762 ~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~---~~~~y~~~a~~l~~d~~~~~~~ 838 (944)
.||+++- -+|.+|++||+++|||+|+++-..- ...-+..+...|..-.+.. |.++..+...++ .|++.++++
T Consensus 301 ~~d~~v~---~~G~~t~~Ea~~~G~P~i~~p~~~d-Q~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~l-~~~~~~~~~ 375 (415)
T 1iir_A 301 RVAAVIH---HGGAGTTHVAARAGAPQILLPQMAD-QPYYAGRVAELGVGVAHDGPIPTFDSLSAALATA-LTPETHARA 375 (415)
T ss_dssp GSSEEEE---CCCHHHHHHHHHHTCCEEECCCSTT-HHHHHHHHHHHTSEEECSSSSCCHHHHHHHHHHH-TSHHHHHHH
T ss_pred hCCEEEe---CCChhHHHHHHHcCCCEEECCCCCc-cHHHHHHHHHCCCcccCCcCCCCHHHHHHHHHHH-cCHHHHHHH
Confidence 8999994 3667799999999999999875221 1234455677787666643 788888888888 998777666
Q ss_pred HHHHHHHhhcCCCCChHHHHHHHHHHH
Q 002273 839 RMSLRDLMSKSPVCDGQNFALGLESTY 865 (944)
Q Consensus 839 r~~~~~~~~~~~~~~~~~~~~~~e~~~ 865 (944)
++..++. . ..-..+..+..+|...
T Consensus 376 ~~~~~~~-~--~~~~~~~~~~~i~~~~ 399 (415)
T 1iir_A 376 TAVAGTI-R--TDGAAVAARLLLDAVS 399 (415)
T ss_dssp HHHHHHS-C--SCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-h--hcChHHHHHHHHHHHH
Confidence 6544432 1 2223445555555543
No 269
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.61 E-value=0.00057 Score=60.60 Aligned_cols=91 Identities=8% Similarity=-0.068 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHH---HHHHHHHHHhhC-C-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002273 341 MAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDK---AVECYQMALSIK-P-NFSQSLNNLGVVYTVQGKMDAAAEMIE 415 (944)
Q Consensus 341 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~~-p-~~~~~~~~la~~~~~~g~~~~A~~~l~ 415 (944)
.+...|.+....++.+.++.+++|+++....+... ++.+++..++.. | ..-+.++.+|..++++|+|++|+.+++
T Consensus 19 ~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~ 98 (126)
T 1nzn_A 19 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR 98 (126)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34444444444455555566666666655554443 566666655544 3 234566666666666666666666666
Q ss_pred HHHHhCCCCHHHHHHH
Q 002273 416 KAIAANPTYAEAYNNL 431 (944)
Q Consensus 416 ~al~~~p~~~~a~~~l 431 (944)
.+++..|++..+....
T Consensus 99 ~lL~~eP~n~QA~~Lk 114 (126)
T 1nzn_A 99 GLLQTEPQNNQAKELE 114 (126)
T ss_dssp HHHHHCTTCHHHHHHH
T ss_pred HHHHhCCCCHHHHHHH
Confidence 6666666665554433
No 270
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A*
Probab=97.53 E-value=0.00033 Score=75.42 Aligned_cols=130 Identities=15% Similarity=0.117 Sum_probs=88.7
Q ss_pred eEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhccc
Q 002273 683 ITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSL 762 (944)
Q Consensus 683 ~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~ 762 (944)
.+++-.+++-|. ..+..+ .|+.+|+|+|.+... .+ + +|.|+|.++ +++....++.
T Consensus 179 ~~i~yaG~l~k~--~~L~~l------~~~~~f~ivG~G~~~--------------~l-~-nV~f~G~~~-~~el~~~l~~ 233 (339)
T 3rhz_A 179 REIHFPGNPERF--SFVKEW------KYDIPLKVYTWQNVE--------------LP-Q-NVHKINYRP-DEQLLMEMSQ 233 (339)
T ss_dssp EEEEECSCTTTC--GGGGGC------CCSSCEEEEESCCCC--------------CC-T-TEEEEECCC-HHHHHHHHHT
T ss_pred cEEEEeCCcchh--hHHHhC------CCCCeEEEEeCCccc--------------Cc-C-CEEEeCCCC-HHHHHHHHHh
Confidence 456666677762 222211 389999999977321 23 3 999999998 6888888877
Q ss_pred ccEEecCCC--------CCCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhcCHHH
Q 002273 763 MDISLDTFP--------YAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTA 834 (944)
Q Consensus 763 ~Di~Ld~~~--------~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~l~~d~~~ 834 (944)
+|+.|-+.+ ++......|+|++|+|||+...... +.+...-|+ .+++.+.++.++....+ +++.
T Consensus 234 ~~~~lv~~~~~~~~y~~~~~P~Kl~eymA~G~PVI~~~~~~~-----~~~v~~~~~-G~~~~~~~e~~~~i~~l--~~~~ 305 (339)
T 3rhz_A 234 GGFGLVWMDDKDKEYQSLYCSYKLGSFLAAGIPVIVQEGIAN-----QELIENNGL-GWIVKDVEEAIMKVKNV--NEDE 305 (339)
T ss_dssp EEEEECCCCGGGHHHHTTCCCHHHHHHHHHTCCEEEETTCTT-----THHHHHHTC-EEEESSHHHHHHHHHHC--CHHH
T ss_pred CCEEEEECCCchhHHHHhcChHHHHHHHHcCCCEEEccChhH-----HHHHHhCCe-EEEeCCHHHHHHHHHHh--CHHH
Confidence 788776411 3446679999999999998443222 123333343 45667889988888776 4677
Q ss_pred HHHHHHHHHHH
Q 002273 835 LANLRMSLRDL 845 (944)
Q Consensus 835 ~~~~r~~~~~~ 845 (944)
+++|++..++.
T Consensus 306 ~~~m~~na~~~ 316 (339)
T 3rhz_A 306 YIELVKNVRSF 316 (339)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88998888775
No 271
>2pq6_A UDP-glucuronosyl/UDP-glucosyltransferase; glycosylation, isoflavonoid, uridine diphosphate glycosyltransferase; 2.10A {Medicago truncatula} SCOP: c.87.1.10
Probab=97.52 E-value=0.0013 Score=74.84 Aligned_cols=150 Identities=15% Similarity=0.149 Sum_probs=97.6
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCC-C-H-HHHHHHHHHHHHcCCCCCcEEEccCccCcHHH
Q 002273 680 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFC-C-D-SVRHRFLSTLEQLGLESLRVDLLPLILLNHDH 756 (944)
Q Consensus 680 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~-~-~-~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~ 756 (944)
+..++|.||......++..+....+-|...+--.+|..+.... . . ...+.+.++ + ++++.+.++.+ +.
T Consensus 294 ~~~vv~vs~GS~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~-----~-~~~~~v~~~~p-q~-- 364 (482)
T 2pq6_A 294 PGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIRPDLVIGGSVIFSSEFTNE-----I-ADRGLIASWCP-QD-- 364 (482)
T ss_dssp TTCEEEEECCSSSCCCHHHHHHHHHHHHHTTCEEEEECCGGGSTTTGGGSCHHHHHH-----H-TTTEEEESCCC-HH--
T ss_pred CCceEEEecCCcccCCHHHHHHHHHHHHhcCCcEEEEEcCCccccccccCcHhHHHh-----c-CCCEEEEeecC-HH--
Confidence 4568899999877777777777777777776666676653210 0 0 012233322 1 47888888876 33
Q ss_pred HHhcc--cccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchhHHHh-hcCCccccc--CCHHHHHHHHHHHhcC
Q 002273 757 MQAYS--LMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLT-KVGLKHLIA--KNEDEYVQLALQLASD 831 (944)
Q Consensus 757 ~~~~~--~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~-~~gl~~~v~--~~~~~y~~~a~~l~~d 831 (944)
..+. .+|+|+ ..+|.+|++||+++|||+|++|-..- ...-+..+. ..|..-.+. -+.++..+...++..|
T Consensus 365 -~~L~h~~~~~~v---th~G~~s~~Eal~~GvP~i~~P~~~d-Q~~na~~~~~~~G~g~~l~~~~~~~~l~~~i~~ll~~ 439 (482)
T 2pq6_A 365 -KVLNHPSIGGFL---THCGWNSTTESICAGVPMLCWPFFAD-QPTDCRFICNEWEIGMEIDTNVKREELAKLINEVIAG 439 (482)
T ss_dssp -HHHTSTTEEEEE---ECCCHHHHHHHHHHTCCEEECCCSTT-HHHHHHHHHHTSCCEEECCSSCCHHHHHHHHHHHHTS
T ss_pred -HHhcCCCCCEEE---ecCCcchHHHHHHcCCCEEecCcccc-hHHHHHHHHHHhCEEEEECCCCCHHHHHHHHHHHHcC
Confidence 3443 455677 25888999999999999999985322 233445454 678776664 3778888888888888
Q ss_pred HHHHHHHHHHHHH
Q 002273 832 VTALANLRMSLRD 844 (944)
Q Consensus 832 ~~~~~~~r~~~~~ 844 (944)
++ .+.+|++.++
T Consensus 440 ~~-~~~~r~~a~~ 451 (482)
T 2pq6_A 440 DK-GKKMKQKAME 451 (482)
T ss_dssp HH-HHHHHHHHHH
T ss_pred Cc-HHHHHHHHHH
Confidence 85 3455555543
No 272
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5
Probab=97.50 E-value=0.00064 Score=76.06 Aligned_cols=137 Identities=7% Similarity=-0.062 Sum_probs=86.2
Q ss_pred CeEEEecCCCCc-CCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhc
Q 002273 682 FITFGSFNNLAK-ITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY 760 (944)
Q Consensus 682 ~~~f~~~~~~~K-~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~ 760 (944)
.++|.++++... .....++...+.+...+--.+|..|.+.. + . ..+ +++|.+.++++ ..+ .+
T Consensus 238 ~~v~v~~Gs~~~~~~~~~~~~~~~al~~~~~~~v~~~g~~~~-~-----~------~~~-~~~v~~~~~~~-~~~---ll 300 (416)
T 1rrv_A 238 PPVHIGFGSSSGRGIADAAKVAVEAIRAQGRRVILSRGWTEL-V-----L------PDD-RDDCFAIDEVN-FQA---LF 300 (416)
T ss_dssp CCEEECCTTCCSHHHHHHHHHHHHHHHHTTCCEEEECTTTTC-C-----C------SCC-CTTEEEESSCC-HHH---HG
T ss_pred CeEEEecCCCCccChHHHHHHHHHHHHHCCCeEEEEeCCccc-c-----c------cCC-CCCEEEeccCC-hHH---Hh
Confidence 456777776642 23344444445555554333343343211 0 0 133 57899989876 333 45
Q ss_pred ccccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCccccc---CCHHHHHHHHHHHhcCHHHHHH
Q 002273 761 SLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIA---KNEDEYVQLALQLASDVTALAN 837 (944)
Q Consensus 761 ~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~---~~~~~y~~~a~~l~~d~~~~~~ 837 (944)
..||+++- -+|.+|++||+++|||+|+++-..- ...-+..+...|..-.+. -|.++..+...++ .|++.+++
T Consensus 301 ~~~d~~v~---~~G~~t~~Ea~~~G~P~i~~p~~~d-Q~~na~~l~~~g~g~~~~~~~~~~~~l~~~i~~l-~~~~~~~~ 375 (416)
T 1rrv_A 301 RRVAAVIH---HGSAGTEHVATRAGVPQLVIPRNTD-QPYFAGRVAALGIGVAHDGPTPTFESLSAALTTV-LAPETRAR 375 (416)
T ss_dssp GGSSEEEE---CCCHHHHHHHHHHTCCEEECCCSBT-HHHHHHHHHHHTSEEECSSSCCCHHHHHHHHHHH-TSHHHHHH
T ss_pred ccCCEEEe---cCChhHHHHHHHcCCCEEEccCCCC-cHHHHHHHHHCCCccCCCCCCCCHHHHHHHHHHh-hCHHHHHH
Confidence 88999994 4677799999999999999885221 123344566677766664 3788888888888 99865555
Q ss_pred HHH
Q 002273 838 LRM 840 (944)
Q Consensus 838 ~r~ 840 (944)
+++
T Consensus 376 ~~~ 378 (416)
T 1rrv_A 376 AEA 378 (416)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 273
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=97.45 E-value=0.00095 Score=75.35 Aligned_cols=149 Identities=15% Similarity=0.077 Sum_probs=97.0
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHh
Q 002273 680 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 759 (944)
Q Consensus 680 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~ 759 (944)
++.++|.||+......++.+....+-+...+--.+|..+... .+.+.+.+.++. ++++.+.++.+ +. ..
T Consensus 270 ~~~vv~vs~GS~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~~-~~~l~~~~~~~~------~~~~~v~~w~p-q~---~v 338 (456)
T 2c1x_A 270 PTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLRDKA-RVHLPEGFLEKT------RGYGMVVPWAP-QA---EV 338 (456)
T ss_dssp TTCEEEEECCSSCCCCHHHHHHHHHHHHHHTCCEEEECCGGG-GGGSCTTHHHHH------TTTEEEESCCC-HH---HH
T ss_pred CcceEEEecCccccCCHHHHHHHHHHHHhcCCeEEEEECCcc-hhhCCHHHHhhc------CCceEEecCCC-HH---HH
Confidence 456889999988777777777666666665555667665431 001112222211 46888888876 33 33
Q ss_pred cc--cccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchhHHHhhc-CCccccc---CCHHHHHHHHHHHhcCHH
Q 002273 760 YS--LMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKV-GLKHLIA---KNEDEYVQLALQLASDVT 833 (944)
Q Consensus 760 ~~--~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~-gl~~~v~---~~~~~y~~~a~~l~~d~~ 833 (944)
+. .+|+|+- .+|.+|++||+++|||+|++|--.- ...-+..+... |..-.+. -+.++..+...++..|++
T Consensus 339 L~h~~~~~fvt---h~G~~S~~Eal~~GvP~i~~P~~~d-Q~~Na~~l~~~~g~g~~l~~~~~~~~~l~~~i~~ll~~~~ 414 (456)
T 2c1x_A 339 LAHEAVGAFVT---HCGWNSLWESVAGGVPLICRPFFGD-QRLNGRMVEDVLEIGVRIEGGVFTKSGLMSCFDQILSQEK 414 (456)
T ss_dssp HTSTTEEEEEE---CCCHHHHHHHHHHTCCEEECCCSTT-HHHHHHHHHHTSCCEEECGGGSCCHHHHHHHHHHHHHSHH
T ss_pred hcCCcCCEEEe---cCCcchHHHHHHhCceEEecCChhh-HHHHHHHHHHHhCeEEEecCCCcCHHHHHHHHHHHHCCCc
Confidence 44 7889882 5888999999999999999985322 23345566665 7766554 267888888888888874
Q ss_pred HHHHHHHHHHH
Q 002273 834 ALANLRMSLRD 844 (944)
Q Consensus 834 ~~~~~r~~~~~ 844 (944)
...+|++.++
T Consensus 415 -~~~~r~~a~~ 424 (456)
T 2c1x_A 415 -GKKLRENLRA 424 (456)
T ss_dssp -HHHHHHHHHH
T ss_pred -HHHHHHHHHH
Confidence 4455554443
No 274
>3hbf_A Flavonoid 3-O-glucosyltransferase; glycosyltransferase, GT-B fold, GT1, phenylpropanoid metabolism; HET: UDP MYC; 2.10A {Medicago truncatula} SCOP: c.87.1.0 PDB: 3hbj_A*
Probab=97.43 E-value=0.0015 Score=73.20 Aligned_cols=149 Identities=11% Similarity=0.055 Sum_probs=97.1
Q ss_pred CCCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHH
Q 002273 679 TNGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 758 (944)
Q Consensus 679 ~~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 758 (944)
+++.++|.||++....+++.+...+.-|...+--.||..+.. ....+-+.+.+. + ++|+.+.++.+ +. .
T Consensus 271 ~~~~vVyvsfGS~~~~~~~~~~el~~~l~~~~~~flw~~~~~-----~~~~lp~~~~~~-~-~~~~~vv~w~P-q~---~ 339 (454)
T 3hbf_A 271 ENSSVVYISFGSVVTPPPHELTALAESLEECGFPFIWSFRGD-----PKEKLPKGFLER-T-KTKGKIVAWAP-QV---E 339 (454)
T ss_dssp CTTCEEEEECCSSCCCCHHHHHHHHHHHHHHCCCEEEECCSC-----HHHHSCTTHHHH-T-TTTEEEESSCC-HH---H
T ss_pred CCCceEEEecCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCc-----chhcCCHhHHhh-c-CCceEEEeeCC-HH---H
Confidence 456788999999988898888888888888777777777643 111111112111 2 47888889886 33 3
Q ss_pred hccccc--EEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchhHHHhh-cCCccccc---CCHHHHHHHHHHHhcCH
Q 002273 759 AYSLMD--ISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTK-VGLKHLIA---KNEDEYVQLALQLASDV 832 (944)
Q Consensus 759 ~~~~~D--i~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~-~gl~~~v~---~~~~~y~~~a~~l~~d~ 832 (944)
.+..+| +|+ ..+|.+|++||++.|||+|++|--.- ...-+..+.. +|..-.|. -+.++..+...++..|+
T Consensus 340 vL~h~~v~~fv---tH~G~~S~~Eal~~GvP~i~~P~~~D-Q~~Na~~v~~~~g~Gv~l~~~~~~~~~l~~av~~ll~~~ 415 (454)
T 3hbf_A 340 ILKHSSVGVFL---THSGWNSVLECIVGGVPMISRPFFGD-QGLNTILTESVLEIGVGVDNGVLTKESIKKALELTMSSE 415 (454)
T ss_dssp HHHSTTEEEEE---ECCCHHHHHHHHHHTCCEEECCCSTT-HHHHHHHHHTTSCSEEECGGGSCCHHHHHHHHHHHHSSH
T ss_pred HHhhcCcCeEE---ecCCcchHHHHHHcCCCEecCccccc-HHHHHHHHHHhhCeeEEecCCCCCHHHHHHHHHHHHCCC
Confidence 445555 666 24788899999999999999984221 2233455555 47765553 36778777777888774
Q ss_pred HHHHHHHHHHH
Q 002273 833 TALANLRMSLR 843 (944)
Q Consensus 833 ~~~~~~r~~~~ 843 (944)
....+|++.+
T Consensus 416 -~~~~~r~~a~ 425 (454)
T 3hbf_A 416 -KGGIMRQKIV 425 (454)
T ss_dssp -HHHHHHHHHH
T ss_pred -hHHHHHHHHH
Confidence 2334444433
No 275
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.41 E-value=0.0023 Score=57.86 Aligned_cols=107 Identities=12% Similarity=0.110 Sum_probs=59.4
Q ss_pred CCCCHHHHHHHHHHHHHCCCH------HHHHHHHHHHHhhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002273 353 NPHCAEACNNLGVIYKDRDNL------DKAVECYQMALSIKPN--------FSQSLNNLGVVYTVQGKMDAAAEMIEKAI 418 (944)
Q Consensus 353 ~p~~~~~~~~la~~~~~~g~~------~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~l~~al 418 (944)
.|++++.|........+.|+. ++-++.|++|+..-|. ....|..+|.. ...++.++|.+.|+.++
T Consensus 9 ~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~ 87 (161)
T 4h7y_A 9 MANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMAR 87 (161)
T ss_dssp -CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHH
Confidence 344444444444444444444 4444455555444332 12344444433 34466666666776666
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChh
Q 002273 419 AANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 460 (944)
Q Consensus 419 ~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~ 460 (944)
+.+...+.+|...|..-.++|+...|.+.+.+++.+.|...+
T Consensus 88 ~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 88 ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 666666666666666666677777777777777776665543
No 276
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A*
Probab=97.41 E-value=0.002 Score=71.63 Aligned_cols=158 Identities=9% Similarity=-0.017 Sum_probs=96.1
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHh
Q 002273 680 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA 759 (944)
Q Consensus 680 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~ 759 (944)
+..++|.++.+... ..+.+....+.+...+ .++++..+.... ...+. +++|.+.++++ ..+ .
T Consensus 220 ~~~~Vlv~~Gs~~~-~~~~~~~~~~al~~~~-~~vv~~~g~~~~-----------~~~~~-~~~v~~~~~~~-~~~---l 281 (404)
T 3h4t_A 220 GSPPVYVGFGSGPA-PAEAARVAIEAVRAQG-RRVVLSSGWAGL-----------GRIDE-GDDCLVVGEVN-HQV---L 281 (404)
T ss_dssp SSCCEEECCTTSCC-CTTHHHHHHHHHHHTT-CCEEEECTTTTC-----------CCSSC-CTTEEEESSCC-HHH---H
T ss_pred CCCeEEEECCCCCC-cHHHHHHHHHHHHhCC-CEEEEEeCCccc-----------ccccC-CCCEEEecCCC-HHH---H
Confidence 34566777777655 4556666666666665 444444322110 01133 57899998876 333 4
Q ss_pred cccccEEecCCCC-CCcccHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcccccC---CHHHHHHHHHHHhcCHHHH
Q 002273 760 YSLMDISLDTFPY-AGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQLASDVTAL 835 (944)
Q Consensus 760 ~~~~Di~Ld~~~~-~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~---~~~~y~~~a~~l~~d~~~~ 835 (944)
+..||+++ . +|..|+.||+++|||+|.++-..- ...-+..+...|..-.+.. |.++..+...++.+ ++.+
T Consensus 282 l~~~d~~v----~~gG~~t~~Eal~~GvP~v~~p~~~d-Q~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~-~~~~ 355 (404)
T 3h4t_A 282 FGRVAAVV----HHGGAGTTTAVTRAGAPQVVVPQKAD-QPYYAGRVADLGVGVAHDGPTPTVESLSAALATALT-PGIR 355 (404)
T ss_dssp GGGSSEEE----ECCCHHHHHHHHHHTCCEEECCCSTT-HHHHHHHHHHHTSEEECSSSSCCHHHHHHHHHHHTS-HHHH
T ss_pred HhhCcEEE----ECCcHHHHHHHHHcCCCEEEcCCccc-HHHHHHHHHHCCCEeccCcCCCCHHHHHHHHHHHhC-HHHH
Confidence 46799999 5 555899999999999999873211 2233455677788766643 78889888888888 7655
Q ss_pred HHHHHHHHHHhhcCCCCChHHHHHHHHHHH
Q 002273 836 ANLRMSLRDLMSKSPVCDGQNFALGLESTY 865 (944)
Q Consensus 836 ~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~ 865 (944)
+++++..+ .+. . -..++.+..+|..+
T Consensus 356 ~~~~~~~~-~~~--~-~~~~~~~~~i~~~~ 381 (404)
T 3h4t_A 356 ARAAAVAG-TIR--T-DGTTVAAKLLLEAI 381 (404)
T ss_dssp HHHHHHHT-TCC--C-CHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHh--h-hHHHHHHHHHHHHH
Confidence 55443222 221 1 23445555555544
No 277
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=97.41 E-value=0.0021 Score=58.11 Aligned_cols=111 Identities=16% Similarity=0.109 Sum_probs=95.2
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCh------HHHHHHHHHHHhhCCCC--------HHHHHHHHHHHHHCCCHHHHHHHHHH
Q 002273 317 YYNWHYADAMYNLGVAYGEMLKF------DMAIVFYELAFHFNPHC--------AEACNNLGVIYKDRDNLDKAVECYQM 382 (944)
Q Consensus 317 ~~~p~~~~~~~~la~~~~~~g~~------~~A~~~~~~al~~~p~~--------~~~~~~la~~~~~~g~~~~A~~~~~~ 382 (944)
-..|.+++.|........+.|+. ++-++.|++++..-|.. ...|...|.. ...++.++|.+.|+.
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~ 85 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQM 85 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHH
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHH
Confidence 35799999999999999999999 89999999999886642 4566666755 566999999999999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 002273 383 ALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAY 428 (944)
Q Consensus 383 al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~ 428 (944)
++++....+.+|...|..-.++|+...|.+.+.+++.+.|...+.+
T Consensus 86 a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 86 ARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp HHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence 9999888999999999999999999999999999999999865543
No 278
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.21 E-value=0.0016 Score=60.32 Aligned_cols=62 Identities=13% Similarity=0.035 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhhC---CCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Q 002273 325 AMYNLGVAYGEMLKFDMAIVFYELAFHFN---PHC------AEACNNLGVIYKDRDNLDKAVECYQMALSI 386 (944)
Q Consensus 325 ~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~------~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 386 (944)
+++.-...+...+.|+.|+-....++... |+. .+++..+|..++..++|..|...|+++++.
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 44555566677777887777777766553 221 346777788888888888888888887665
No 279
>2acv_A Triterpene UDP-glucosyl transferase UGT71G1; glycosyltransferase; HET: UDP; 2.00A {Medicago truncatula} SCOP: c.87.1.10 PDB: 2acw_A*
Probab=97.20 E-value=0.0054 Score=69.35 Aligned_cols=139 Identities=14% Similarity=0.091 Sum_probs=88.4
Q ss_pred CCCeEEEecCCCC-cCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHH
Q 002273 680 NGFITFGSFNNLA-KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQ 758 (944)
Q Consensus 680 ~~~~~f~~~~~~~-K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~ 758 (944)
++.++|.||.... .++.+.+....+-|...+--.+|..+.. .+...+.+.++... ++|+.+.++.+ +.+.+
T Consensus 275 ~~~vv~vs~GS~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~--~~~l~~~~~~~~~~----~~~~~v~~w~p-q~~vL- 346 (463)
T 2acv_A 275 DKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLWSNSAE--KKVFPEGFLEWMEL----EGKGMICGWAP-QVEVL- 346 (463)
T ss_dssp TTCEEEEECCSSCCCCCHHHHHHHHHHHHHHTCEEEEECCCC--GGGSCTTHHHHHHH----HCSEEEESSCC-HHHHH-
T ss_pred CCceEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEECCC--cccCChhHHHhhcc----CCCEEEEccCC-HHHHh-
Confidence 4568899999888 7887777777777777665566666542 00011122222210 35777778876 33322
Q ss_pred hcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchhHH-HhhcCCccccc---------CCHHHHHHHHHHH
Q 002273 759 AYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSL-LTKVGLKHLIA---------KNEDEYVQLALQL 828 (944)
Q Consensus 759 ~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~-l~~~gl~~~v~---------~~~~~y~~~a~~l 828 (944)
....+|+|+- .+|.+|++||+++|||+|++|-..-. ..-+.. ....|..-.+. -+.++..+...++
T Consensus 347 ~h~~~~~fvt---h~G~~s~~Eal~~GvP~i~~P~~~dQ-~~Na~~lv~~~g~g~~l~~~~~~~~~~~~~~~l~~ai~~l 422 (463)
T 2acv_A 347 AHKAIGGFVS---HCGWNSILESMWFGVPILTWPIYAEQ-QLNAFRLVKEWGVGLGLRVDYRKGSDVVAAEEIEKGLKDL 422 (463)
T ss_dssp HSTTEEEEEE---CCCHHHHHHHHHTTCCEEECCCSTTH-HHHHHHHHHTSCCEEESCSSCCTTCCCCCHHHHHHHHHHH
T ss_pred CCCccCeEEe---cCCchhHHHHHHcCCCeeeccchhhh-HHHHHHHHHHcCeEEEEecccCCCCccccHHHHHHHHHHH
Confidence 2246888882 58889999999999999999863332 233444 46778876661 2567777666677
Q ss_pred hc
Q 002273 829 AS 830 (944)
Q Consensus 829 ~~ 830 (944)
..
T Consensus 423 l~ 424 (463)
T 2acv_A 423 MD 424 (463)
T ss_dssp TC
T ss_pred Hh
Confidence 75
No 280
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=97.13 E-value=0.25 Score=57.22 Aligned_cols=124 Identities=9% Similarity=-0.044 Sum_probs=83.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q 002273 329 LGVAYGEMLKFDMAIVFYELAFHFNPHCAE----ACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQ 404 (944)
Q Consensus 329 la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 404 (944)
++......++.+.|...+........-+.. .+..++.-+...+...++...+.+......+ ......++......
T Consensus 220 ~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~~r~Alr~ 298 (618)
T 1qsa_A 220 VAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQS-TSLIERRVRMALGT 298 (618)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCC-hHHHHHHHHHHHHC
Confidence 334444455778888888777654333322 2222333333344356777778776654443 33344444455677
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002273 405 GKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 453 (944)
Q Consensus 405 g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~ 453 (944)
|+++.|..+|++.-..........|.+|+.+...|+.++|..+|+++.+
T Consensus 299 ~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 299 GDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp TCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999999999876554445688999999999999999999999999975
No 281
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.07 E-value=0.003 Score=58.56 Aligned_cols=94 Identities=10% Similarity=0.021 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC------C
Q 002273 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGN---------VEAHIGKGICLQMQNMGRLAFDSFSEAVKLD------P 113 (944)
Q Consensus 49 ~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------p 113 (944)
-.++.....++..|.|+.|+.+...++....++ .+.+..+|..++..++|..|...|+++++.. +
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 358889999999999999999999877653222 3588999999999999999999999997641 1
Q ss_pred -------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002273 114 -------------------QNACAHTHCGILYKDEGRLVEAAESYHKA 142 (944)
Q Consensus 114 -------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~a 142 (944)
.+.+..+.++.||.+.+++++|+..++.+
T Consensus 101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 01267899999999999999999998764
No 282
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.97 E-value=0.0095 Score=53.56 Aligned_cols=76 Identities=12% Similarity=0.089 Sum_probs=64.9
Q ss_pred CCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhh
Q 002273 388 PNFSQSLNNLGVVYTVQGKM---DAAAEMIEKAIAANPT-YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 463 (944)
Q Consensus 388 p~~~~~~~~la~~~~~~g~~---~~A~~~l~~al~~~p~-~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~ 463 (944)
....++.+++|+++.+..+. .+++.+++..+...|. .-+.++.||..+.++|+|++|.++.+.+|+..|++.++..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 45688899999999887754 4788999999988884 5678999999999999999999999999999999987764
No 283
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.79 E-value=0.0074 Score=53.54 Aligned_cols=74 Identities=12% Similarity=0.092 Sum_probs=59.5
Q ss_pred CHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhh
Q 002273 390 FSQSLNNLGVVYTVQGKM---DAAAEMIEKAIAANPT-YAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQ 463 (944)
Q Consensus 390 ~~~~~~~la~~~~~~g~~---~~A~~~l~~al~~~p~-~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~ 463 (944)
.+.+.+++|+++.+..+. .+++..++..+..+|. .-+.++.||..+.++|+|++|.++.+.+|++.|++.+|..
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~ 116 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 116 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence 467888888888877654 4688888888888774 4678888888888888888888888888888888887754
No 284
>2vch_A Hydroquinone glucosyltransferase; glycosyltransferase, N-glucosyltransferase, UDP-glucose- dependent, plant glycosyltransferase; HET: UDP; 1.45A {Arabidopsis thaliana} SCOP: c.87.1.10 PDB: 2vce_A* 2vg8_A*
Probab=96.64 E-value=0.017 Score=65.50 Aligned_cols=137 Identities=18% Similarity=0.110 Sum_probs=86.4
Q ss_pred CCCeEEEecCCCCcCCHHHHHHHHHHHhHcCCceEEEecCCCC------------C---HHHHHHHHHHHHHcCCCCCc-
Q 002273 680 NGFITFGSFNNLAKITPKVLQVWARILCAVPNSRLVVKCKPFC------------C---DSVRHRFLSTLEQLGLESLR- 743 (944)
Q Consensus 680 ~~~~~f~~~~~~~K~~~~~~~~~~~il~~~p~~~l~~~~~~~~------------~---~~~~~~~~~~~~~~gi~~~r- 743 (944)
++.++|-||.+....+++.+....+-|...+--.||..+.+.. . +.+.+++.++. .+|
T Consensus 267 ~~~vvyvs~GS~~~~~~~~~~~~~~al~~~~~~~lw~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~------~~~g 340 (480)
T 2vch_A 267 LGSVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERT------KKRG 340 (480)
T ss_dssp TTCEEEEECTTTCCCCHHHHHHHHHHHHHTTCEEEEEECCCCSSTTTTTTCC--CSCGGGGSCTTHHHHT------TTTE
T ss_pred CCceEEEecccccCCCHHHHHHHHHHHHhcCCcEEEEECCccccccccccccccccchhhhcCHHHHHHh------CCCe
Confidence 3567899999888888888888888888877667777654321 0 01222332221 233
Q ss_pred EEEccCccCcHHHHHhccccc--EEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchhHHH-hhcCCccccc-----
Q 002273 744 VDLLPLILLNHDHMQAYSLMD--ISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLL-TKVGLKHLIA----- 815 (944)
Q Consensus 744 v~~~~~~~~~~~~~~~~~~~D--i~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l-~~~gl~~~v~----- 815 (944)
+++.++.| +. ..+..+| +|+ ..+|.+|++||+++|||+|++|--.- ...-+..+ ..+|+.-.+.
T Consensus 341 ~~v~~w~P-q~---~vL~h~~v~~fv---tHgG~~S~~Eal~~GvP~i~~P~~~D-Q~~na~~l~~~~G~g~~l~~~~~~ 412 (480)
T 2vch_A 341 FVIPFWAP-QA---QVLAHPSTGGFL---THCGWNSTLESVVSGIPLIAWPLYAE-QKMNAVLLSEDIRAALRPRAGDDG 412 (480)
T ss_dssp EEEESCCC-HH---HHHHSTTEEEEE---ECCCHHHHHHHHHHTCCEEECCCSTT-HHHHHHHHHHTTCCEECCCCCTTS
T ss_pred EEEeCccC-HH---HHhCCCCcCeEE---ecccchhHHHHHHcCCCEEecccccc-chHHHHHHHHHhCeEEEeecccCC
Confidence 34445765 33 4455555 566 25888999999999999999985221 22334444 5777765553
Q ss_pred -CCHHHHHHHHHHHhc
Q 002273 816 -KNEDEYVQLALQLAS 830 (944)
Q Consensus 816 -~~~~~y~~~a~~l~~ 830 (944)
-+.++..+...++..
T Consensus 413 ~~~~~~l~~av~~vl~ 428 (480)
T 2vch_A 413 LVRREEVARVVKGLME 428 (480)
T ss_dssp CCCHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHhc
Confidence 256777766667776
No 285
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.60 E-value=0.018 Score=51.07 Aligned_cols=75 Identities=11% Similarity=0.007 Sum_probs=51.4
Q ss_pred CHHHHHHHHHHHHHhCCH---HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhH
Q 002273 81 NVEAHIGKGICLQMQNMG---RLAFDSFSEAVKLDPQ-NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAEC 155 (944)
Q Consensus 81 ~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 155 (944)
.+.+.+.+|.++.+..+. .+++.+++..++.+|. .-+.++.+|..+++.|+|++|..+.+.+++..|++..+...
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~L 117 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 117 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 566677777777666543 3577777777776663 35667777777777777777777777777777777665443
No 286
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.58 E-value=0.056 Score=48.59 Aligned_cols=77 Identities=8% Similarity=-0.051 Sum_probs=50.3
Q ss_pred CCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 002273 355 HCAEACNNLGVIYKDRDN---LDKAVECYQMALSIKPN-FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNN 430 (944)
Q Consensus 355 ~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~ 430 (944)
...++.+++|+++....+ ..+++.+++..+...|. .-+.++.+|..++++|+|++|.++.+.+++..|++..+...
T Consensus 37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~L 116 (144)
T 1y8m_A 37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGAL 116 (144)
T ss_dssp SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 345666666666666553 34566677777766663 34567777777777777777777777777777777655443
Q ss_pred H
Q 002273 431 L 431 (944)
Q Consensus 431 l 431 (944)
.
T Consensus 117 k 117 (144)
T 1y8m_A 117 K 117 (144)
T ss_dssp H
T ss_pred H
Confidence 3
No 287
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.39 E-value=0.37 Score=58.48 Aligned_cols=75 Identities=11% Similarity=-0.004 Sum_probs=53.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 002273 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGD 240 (944)
Q Consensus 161 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 240 (944)
......+...|..++|++..+ +.... .......|++++|.+..+. .++...|..+|..+.+.++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~--------~~~~~---f~~~l~~~~~~~A~~~~~~-----~~~~~~W~~la~~al~~~~ 696 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISP--------DQDQK---FELALKVGQLTLARDLLTD-----ESAEMKWRALGDASLQRFN 696 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC--------CHHHH---HHHHHHHTCHHHHHHHHTT-----CCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCChHHheecCC--------Ccchh---eehhhhcCCHHHHHHHHHh-----hCcHhHHHHHHHHHHHcCC
Confidence 334455566788888776553 22222 2345678999999887543 3567889999999999999
Q ss_pred HHHHHHHHHHH
Q 002273 241 LESAIACYERC 251 (944)
Q Consensus 241 ~~~A~~~~~~a 251 (944)
++.|+.+|.++
T Consensus 697 ~~~A~~~y~~~ 707 (814)
T 3mkq_A 697 FKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 99999998875
No 288
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.94 E-value=0.25 Score=59.95 Aligned_cols=44 Identities=14% Similarity=0.146 Sum_probs=29.1
Q ss_pred HcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002273 169 LAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKA 217 (944)
Q Consensus 169 ~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 217 (944)
..|++++|.+..+ ..++...|..+|..+.+.++++.|+++|.++
T Consensus 664 ~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 664 KVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4466666666543 2345667777777777777777777777765
No 289
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=95.51 E-value=1.3 Score=47.89 Aligned_cols=60 Identities=18% Similarity=0.093 Sum_probs=49.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002273 195 YNLGVVYSELMQYDTALGCYEKAALERPM------YAEAYCNMGVIYKNRGDLESAIACYERCLAV 254 (944)
Q Consensus 195 ~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 254 (944)
..+|.+|+..|+|.+|.+.+.++.+.-.. -.+++..-..+|...+++.++...+.++...
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~ 168 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTT 168 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence 47899999999999999999998774211 2456777788999999999999999988765
No 290
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=95.50 E-value=1.5 Score=40.25 Aligned_cols=98 Identities=14% Similarity=0.200 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh--c--C------------
Q 002273 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVK--L--D------------ 112 (944)
Q Consensus 49 ~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~--~------------ 112 (944)
+-.+..+..++-.|+|..|+-.+.+ -+...+.+..+.||.+.++|.+|+..+++.++ . +
T Consensus 34 eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffv 108 (242)
T 3kae_A 34 EYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFV 108 (242)
T ss_dssp CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSC
T ss_pred HHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeee
Confidence 3455677888899999999887654 25678889999999999999999999999993 2 2
Q ss_pred -CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChh
Q 002273 113 -PQNAC-AHTHCGILYKDEGRLVEAAESYHKALSADPSYKP 151 (944)
Q Consensus 113 -p~~~~-~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 151 (944)
|.+.+ .+..+|.++.+.|+.++|+.+|.......|-...
T Consensus 109 d~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~ 149 (242)
T 3kae_A 109 DPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSP 149 (242)
T ss_dssp CTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHH
T ss_pred ccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccch
Confidence 33333 4667899999999999999999999988876443
No 291
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.40 E-value=5.3 Score=47.96 Aligned_cols=275 Identities=12% Similarity=0.065 Sum_probs=120.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---C---cH----
Q 002273 195 YNLGVVYSELMQYDTALGCYEKAALER-PMY----AEAYCNMGVIYKNRGDLESAIACYERCLAVSP---N---FE---- 259 (944)
Q Consensus 195 ~~la~~~~~~g~~~~A~~~~~~al~~~-p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~---~~---- 259 (944)
..+|.+ ..|+.++++..+.+.+... .++ .-+++.+|.++...+ ++++..+...+.... . ..
T Consensus 380 aSLGlI--h~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~--~~~~~lL~~~L~~~~~~~~~~~~~~ir~ 455 (963)
T 4ady_A 380 ASLGVI--HKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFG--RDTTDYLKNIIVENSGTSGDEDVDVLLH 455 (963)
T ss_dssp HHHHHH--TSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTT--HHHHHHHHHHHHHHSSCCSCHHHHHHHH
T ss_pred HHhhhh--ccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCc--HHHHHHHHHHHcCccccccccccHHHHH
Confidence 344444 4566677888777766422 122 235666666666555 468888887776543 0 11
Q ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCc-----hhHHHhhhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 002273 260 IAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQS-----PFFELVKLEGDINQGVAYYKKALYYNWHYADAMYNLGVAYG 334 (944)
Q Consensus 260 ~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~l~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 334 (944)
.+...+|.++...++......+............ .++-++.-.++-+....++..+.+...+...-...+|..+.
T Consensus 456 gAaLGLGla~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll 535 (963)
T 4ady_A 456 GASLGIGLAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALI 535 (963)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhh
Confidence 1222333333222221111111111111111000 11122233444443344444333322222222223333344
Q ss_pred HcCChHHHHHHHHHHHhhCCCCHHH----HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q 002273 335 EMLKFDMAIVFYELAFHFNPHCAEA----CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAA 410 (944)
Q Consensus 335 ~~g~~~~A~~~~~~al~~~p~~~~~----~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A 410 (944)
..|+.+.+....+..... .++.. ...+|..|...|+...-.+.+..+.+-..++..-..-+|..+...|+.+.+
T Consensus 536 ~~g~~e~~~~li~~L~~~--~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~v 613 (963)
T 4ady_A 536 NYGRQELADDLITKMLAS--DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTTV 613 (963)
T ss_dssp TTTCGGGGHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSSH
T ss_pred hCCChHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHHH
Confidence 556655555554444332 12222 233455566677744333355555543222222222222223334444333
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHc--CC-HHHHHHHHHHHHhhCCCChhhhhhHHHHhhhccCCChHH
Q 002273 411 AEMIEKAIAANPTYAEAYNNLGVLYRDA--GS-ISLAIDAYEQCLKIDPDSRNAGQNRLLAMNYINEGHDDK 479 (944)
Q Consensus 411 ~~~l~~al~~~p~~~~a~~~la~~~~~~--g~-~~eA~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~ 479 (944)
...++...+ ..++.+.+..+.++-.. |+ ..++++.+.+... ++ +..+..+-+.++..+..+..+.
T Consensus 614 ~rlv~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~-D~-d~~Vrq~Ai~ALG~Ig~gtnna 681 (963)
T 4ady_A 614 PRIVQLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK-DP-VDFVRQAAMIALSMILIQQTEK 681 (963)
T ss_dssp HHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT-CS-SHHHHHHHHHHHHHHSTTCCTT
T ss_pred HHHHHHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc-CC-CHHHHHHHHHHHHHHhcCCccc
Confidence 333322221 23355544444333332 22 2567777777753 44 4556667777888777776554
No 292
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7
Probab=95.39 E-value=0.092 Score=56.63 Aligned_cols=107 Identities=10% Similarity=-0.005 Sum_probs=62.6
Q ss_pred CeEEEecCC--CCcCCH--HHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCC---CCcE-EEccCccCc
Q 002273 682 FITFGSFNN--LAKITP--KVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLE---SLRV-DLLPLILLN 753 (944)
Q Consensus 682 ~~~f~~~~~--~~K~~~--~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~---~~rv-~~~~~~~~~ 753 (944)
.|++.-..+ ..|.-| .+.++...+.. - +.++++.+.+. .++... .+.+ .+. ..++ .+.|... -
T Consensus 182 ~i~l~pga~~~~~k~wp~~~~~~l~~~L~~-~-~~~vvl~g~~~----e~~~~~-~i~~-~~~~~~~~~~~~l~g~~s-l 252 (348)
T 1psw_A 182 MIGFCPGAEFGPAKRWPHYHYAELAKQLID-E-GYQVVLFGSAK----DHEAGN-EILA-ALNTEQQAWCRNLAGETQ-L 252 (348)
T ss_dssp EEEEECCCTTCGGGSCCHHHHHHHHHHHHH-T-TCEEEECCCGG----GHHHHH-HHHT-TSCHHHHTTEEECTTTSC-H
T ss_pred EEEEECCCCccccCCCCHHHHHHHHHHHHH-C-CCeEEEEeChh----hHHHHH-HHHH-hhhhccccceEeccCcCC-H
Confidence 455544431 456655 44444433333 2 67777776542 222222 2221 121 1244 5666644 6
Q ss_pred HHHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccch
Q 002273 754 HDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVG 801 (944)
Q Consensus 754 ~~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~ 801 (944)
.+..+.+..||+++-.- .|+..+ |.++|+|+|++-|.+...|.+
T Consensus 253 ~e~~ali~~a~l~I~~D---sg~~Hl-Aaa~g~P~v~lfg~t~~~~~~ 296 (348)
T 1psw_A 253 DQAVILIAACKAIVTND---SGLMHV-AAALNRPLVALYGPSSPDFTP 296 (348)
T ss_dssp HHHHHHHHTSSEEEEES---SHHHHH-HHHTTCCEEEEESSSCTTSSC
T ss_pred HHHHHHHHhCCEEEecC---CHHHHH-HHHcCCCEEEEECCCCccccC
Confidence 89999999999998421 444455 888999999999988766654
No 293
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=95.27 E-value=0.51 Score=51.10 Aligned_cols=95 Identities=14% Similarity=-0.016 Sum_probs=72.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCC--CC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---CCCH----H
Q 002273 326 MYNLGVAYGEMLKFDMAIVFYELAFHFNP--HC----AEACNNLGVIYKDRDNLDKAVECYQMALSIK---PNFS----Q 392 (944)
Q Consensus 326 ~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---p~~~----~ 392 (944)
-..+|..|+..|+|.+|.+.+.+..+.-. ++ .+++.....+|...+++.++...|.++.... +.++ .
T Consensus 102 ~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~ 181 (394)
T 3txn_A 102 EARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 34789999999999999998888876421 11 5667777888999999999999999887653 1223 3
Q ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHh
Q 002273 393 SLNNLGVVYT-VQGKMDAAAEMIEKAIAA 420 (944)
Q Consensus 393 ~~~~la~~~~-~~g~~~~A~~~l~~al~~ 420 (944)
....-|..+. ..++|.+|..+|-++++.
T Consensus 182 i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 182 LDLQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 4556678888 799999999999888754
No 294
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.18 E-value=0.096 Score=61.69 Aligned_cols=58 Identities=16% Similarity=0.038 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002273 393 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQ 450 (944)
Q Consensus 393 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~ 450 (944)
.+...+..+...|+++-|+++.++++...|.....|+.|+.+|..+|+++.|+-.+..
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNS 396 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINS 396 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 4555577777788888888888888888888888888888888888888888765443
No 295
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.11 E-value=1.3 Score=49.11 Aligned_cols=204 Identities=14% Similarity=-0.039 Sum_probs=126.3
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 002273 48 GKDALSYANILRSRNKFVDALALYEIVLEK------DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTH 121 (944)
Q Consensus 48 ~~~~~~~A~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 121 (944)
.+..+..+..+. .|++++|++.+..+.+. .+....+...+...+...++++...+.+.-..+.......+-..
T Consensus 17 ~~~~~~~~~~l~-~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~ 95 (445)
T 4b4t_P 17 LKEEFPKIDSLA-QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQY 95 (445)
T ss_dssp -----------C-HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHH
T ss_pred HHHHHHHHHHHH-cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 344455555543 47899999887655443 12356778888899999999998888776555544433333222
Q ss_pred HHHH---HH-HcCCHHHHHHHHHHHHHcC----CCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCC--C--
Q 002273 122 CGIL---YK-DEGRLVEAAESYHKALSAD----PSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDP--H-- 189 (944)
Q Consensus 122 la~~---~~-~~g~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~-- 189 (944)
+... +. .....+. +.....+..- .+-...-...+.+...++.++...|++.+|...+.......- .
T Consensus 96 ~V~~~~~~l~~~~~~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~ 173 (445)
T 4b4t_P 96 MIQKVMEYLKSSKSLDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEM 173 (445)
T ss_dssp HHHHHHHHHHHHCTTHH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCH
T ss_pred HHHHHHHHHhcCCchhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccH
Confidence 2221 11 1122221 1112222221 111111123566778899999999999999999998764311 1
Q ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002273 190 --YAPAYYNLGVVYSELMQYDTALGCYEKAAL---ERPMYA----EAYCNMGVIYKNRGDLESAIACYERCLAV 254 (944)
Q Consensus 190 --~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~ 254 (944)
-.+.+.....+|...+++.+|...++++.. ..+..+ ..+...|.++...++|.+|-.+|..++..
T Consensus 174 ~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 174 SEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 256777889999999999999999998743 233333 45677899999999999999999988764
No 296
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.03 E-value=0.15 Score=60.10 Aligned_cols=115 Identities=12% Similarity=0.024 Sum_probs=85.2
Q ss_pred cCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--Hc-CChHHHHHHHHHHHhh--------CCCC----------HHH
Q 002273 302 EGD-INQGVAYYKKALYYNWHYADAMYNLGVAYG--EM-LKFDMAIVFYELAFHF--------NPHC----------AEA 359 (944)
Q Consensus 302 ~~~-~~~A~~~~~~al~~~p~~~~~~~~la~~~~--~~-g~~~~A~~~~~~al~~--------~p~~----------~~~ 359 (944)
.++ ++.|+.++++..+.+|..... +..+.+.. .. .+--+|+..+.+.++. .+.+ ...
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~~~~-~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L 339 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIHDIY-YKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL 339 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGGHHH-HHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhhCCchhHH-HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence 444 588999999999998875432 22222222 22 2344677777777642 2222 235
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 002273 360 CNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKA 417 (944)
Q Consensus 360 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~a 417 (944)
+...+..+...|+++-|+++.++|+...|..-..|+.|+.+|..+|+|+.|+-.+..+
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 6667888889999999999999999999999999999999999999999999766544
No 297
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=94.93 E-value=7.2 Score=45.00 Aligned_cols=79 Identities=6% Similarity=-0.148 Sum_probs=45.2
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Q 002273 306 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALS 385 (944)
Q Consensus 306 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 385 (944)
.++...+.+......+ ......++......|+++.|...++++-..........+-+|..+...|+.++|..+|+++.+
T Consensus 269 ~~~~~~~~~~~~~~~~-~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 269 DEQAKWRDDAIMRSQS-TSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHHHHHHTCCC-HHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hHHHHHHHhccccCCC-hHHHHHHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 4555555554433322 222333333344557777777777655443334566667777777777777777777777654
No 298
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=94.50 E-value=1.4 Score=41.58 Aligned_cols=108 Identities=11% Similarity=0.011 Sum_probs=69.7
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILY 126 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 126 (944)
+++..|.+| .+.|+++.|.++.++. ++...|..+|......|+++-|..+|.++-. +..+..+|
T Consensus 7 D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly 70 (177)
T 3mkq_B 7 DPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLY 70 (177)
T ss_dssp CHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHH
T ss_pred ChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHH
Confidence 566666666 6679999999988775 6788899999999999999999999887532 23344456
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHH
Q 002273 127 KDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYE 182 (944)
Q Consensus 127 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~ 182 (944)
...|+.++-...-+.+.... + +.....++...|+++++++.|.+
T Consensus 71 ~~tg~~e~L~kla~iA~~~g-~-----------~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 71 LVTGDVNKLSKMQNIAQTRE-D-----------FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHTCHHHHHHHHHHHHHTT-C-----------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHCc-c-----------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 66677655444444333222 1 11122334455677776666543
No 299
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=94.15 E-value=0.75 Score=46.30 Aligned_cols=121 Identities=10% Similarity=-0.029 Sum_probs=73.1
Q ss_pred HHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002273 333 YGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAE 412 (944)
Q Consensus 333 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~ 412 (944)
+.+.|+.++|++.++..++.+|.+......+..++.-.|+++.|.+.++.+.+++|+.......+-.+. .|..
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI-------~aE~ 79 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLV-------KAAQ 79 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH-------HHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHH-------HHHH
Confidence 455677777777777777777777777777777777778888888888777777777543221111110 0011
Q ss_pred HHHHHHHh--CC---CC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChh
Q 002273 413 MIEKAIAA--NP---TY---AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRN 460 (944)
Q Consensus 413 ~l~~al~~--~p---~~---~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~ 460 (944)
.=++.+.- .| .. -.....-+......|+.++|.+.-.++++..|..+.
T Consensus 80 ~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 80 ARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp HHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred HHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 11111110 11 11 122233344556678999999999999888887654
No 300
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula}
Probab=93.81 E-value=0.089 Score=56.74 Aligned_cols=98 Identities=13% Similarity=0.087 Sum_probs=59.7
Q ss_pred CcCC-HHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCC
Q 002273 692 AKIT-PKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTF 770 (944)
Q Consensus 692 ~K~~-~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~ 770 (944)
.|.= .+.+.-.++.|..- +..+++.+++. .++...+..+..+ ..-+.+.|... -.+..+.+..||+++-.
T Consensus 198 ~k~wp~~~~~~l~~~l~~~-g~~vvl~g~~~----e~~~~~~i~~~~~--~~~~~l~g~~s-l~e~~ali~~a~~~i~~- 268 (349)
T 3tov_A 198 EKRWPAERFAHVADYFGRL-GYKTVFFGGPM----DLEMVQPVVEQME--TKPIVATGKFQ-LGPLAAAMNRCNLLITN- 268 (349)
T ss_dssp GGCCCHHHHHHHHHHHHHH-TCEEEECCCTT----THHHHHHHHHTCS--SCCEECTTCCC-HHHHHHHHHTCSEEEEE-
T ss_pred cCCCCHHHHHHHHHHHHhC-CCeEEEEeCcc----hHHHHHHHHHhcc--cccEEeeCCCC-HHHHHHHHHhCCEEEEC-
Confidence 4544 34444444444333 56777766542 2222222233332 23356667654 57899999999999832
Q ss_pred CCCCcccHHHhhhcCCcEEecCCCcccccch
Q 002273 771 PYAGTTTTCESLYMGVPCVTMAGSVHAHNVG 801 (944)
Q Consensus 771 ~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~ 801 (944)
-.|+.-+ |.++|+|+|++-|.+...+.|
T Consensus 269 --DsG~~Hl-Aaa~g~P~v~lfg~t~p~~~~ 296 (349)
T 3tov_A 269 --DSGPMHV-GISQGVPIVALYGPSNPFFYG 296 (349)
T ss_dssp --SSHHHHH-HHTTTCCEEEECSSCCHHHHS
T ss_pred --CCCHHHH-HHhcCCCEEEEECCCCccccC
Confidence 2455666 889999999999988766654
No 301
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=93.71 E-value=0.62 Score=46.87 Aligned_cols=62 Identities=15% Similarity=0.035 Sum_probs=57.6
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCH
Q 002273 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNA 116 (944)
Q Consensus 55 A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 116 (944)
...+++.|+.++|++..+..++.+|.|+.....+...++-.|+++.|.+.++.+.+++|...
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~ 65 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 65 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence 35678899999999999999999999999999999999999999999999999999998763
No 302
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=93.68 E-value=4.2 Score=37.33 Aligned_cols=190 Identities=18% Similarity=0.154 Sum_probs=124.3
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHH
Q 002273 55 ANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVE 134 (944)
Q Consensus 55 A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~ 134 (944)
....++-.+|+.++-+-.-. .|..++....++..++-.|+|..++-.+. +-+...+.+..+.||....++.+
T Consensus 9 I~Ks~kY~dYdt~~fLsa~L---~~~~~eY~lL~~I~LyyngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klKdYkk 80 (242)
T 3kae_A 9 ICKSIRYRDYETAIFLAACL---LPCKPEYRMLMSIVLYLNGEYTRALFHLH-----KLNTCTSKYYESLCYKKKKDYKK 80 (242)
T ss_dssp HHHHHHTTCHHHHHHHHHHH---C----CTHHHHHHHHHHTTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhhcccccHHHHHHHHH---ccCChHHHhhhhhhhhhcchHhHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHH
Confidence 34456678888877554333 34455677888999999999999887654 23456778888999999999999
Q ss_pred HHHHHHHHHH--cC---------------CCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHH
Q 002273 135 AAESYHKALS--AD---------------PSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNL 197 (944)
Q Consensus 135 A~~~~~~al~--~~---------------p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 197 (944)
|+..+++.++ .+ |.+.+ ..+..+|..+.+.|+.++|+.+|......+|-.+.+-..+
T Consensus 81 A~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkE------fFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~~vEnli 154 (242)
T 3kae_A 81 AIKSLESILEGKVERDPDVDARIQEMFVDPGDEE------FFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFSPVENLL 154 (242)
T ss_dssp HHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHH------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHHhcccccCcccccccceeeeccchHH------HHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccchHHHHH
Confidence 9999999993 22 22222 2467789999999999999999999988876543332111
Q ss_pred HH-----------HHH------HcCCHHHHH--------HHHHHHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHH
Q 002273 198 GV-----------VYS------ELMQYDTAL--------GCYEKAALERPMYAE-AYCNMGVIYKNRGDLESAIACYERC 251 (944)
Q Consensus 198 a~-----------~~~------~~g~~~~A~--------~~~~~al~~~p~~~~-~~~~la~~~~~~g~~~~A~~~~~~a 251 (944)
-. +.. +...+.... ...++..+.-|.... .....+.-|+.+|-.++...+|...
T Consensus 155 yeN~vp~~~d~~~i~~~~~~~i~~~y~~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~s~~lf~~l 234 (242)
T 3kae_A 155 LENKVPQKRDKENVRQTGRRGIEEEYVSDSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLGMNDKSKACFELV 234 (242)
T ss_dssp HTTCCCCCC-----------CHHHHHHHHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcCCCcccchHHHHhhhhccchhhhhhhHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhcccchhHHHHHHHH
Confidence 00 000 000011111 122222333455333 2345677888999999999999998
Q ss_pred HHhCCCc
Q 002273 252 LAVSPNF 258 (944)
Q Consensus 252 l~~~p~~ 258 (944)
-+.+|..
T Consensus 235 R~kDP~F 241 (242)
T 3kae_A 235 RRKDPMF 241 (242)
T ss_dssp HHHSTTT
T ss_pred HhcCCCc
Confidence 8888853
No 303
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.67 E-value=4.8 Score=44.58 Aligned_cols=97 Identities=11% Similarity=-0.046 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhC--CCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHh---hCCCCH---
Q 002273 324 DAMYNLGVAYGEMLKFDMAIVFYELAFHFN--PHC----AEACNNLGVIYKDRDNLDKAVECYQMALS---IKPNFS--- 391 (944)
Q Consensus 324 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~--- 391 (944)
.....|+.+|...|++.+|...+.....-. ..+ .+.+.....++...+++.+|...++++.. ..+..+
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk 217 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLK 217 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHH
Confidence 445678888888888888888888765431 111 45677778888888888888888887642 133333
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002273 392 -QSLNNLGVVYTVQGKMDAAAEMIEKAIAA 420 (944)
Q Consensus 392 -~~~~~la~~~~~~g~~~~A~~~l~~al~~ 420 (944)
..+...|.++...++|.+|..+|..+++.
T Consensus 218 ~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 218 LEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 35566788888888888888888777653
No 304
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=93.56 E-value=1.7 Score=40.89 Aligned_cols=108 Identities=8% Similarity=-0.047 Sum_probs=66.6
Q ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHH
Q 002273 81 NVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVL 160 (944)
Q Consensus 81 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 160 (944)
+++..+.++ .+.|+++.|.+..++. ++...|..+|......|+++-|..+|+++-. +
T Consensus 7 D~~~rF~LA---L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------------~ 63 (177)
T 3mkq_B 7 DPHIRFDLA---LEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS---------------F 63 (177)
T ss_dssp CHHHHHHHH---HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------------H
T ss_pred ChHHHHHHH---HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------------H
Confidence 445555554 5678888888887654 5677888899999999999988888887622 1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 002273 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEK 216 (944)
Q Consensus 161 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 216 (944)
..+...|...|+.++-.+.-+.+..... +.....++..+|+++++++.|.+
T Consensus 64 ~~L~~Ly~~tg~~e~L~kla~iA~~~g~-----~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 64 DKLSFLYLVTGDVNKLSKMQNIAQTRED-----FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHCcc-----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 2223334455666554444443333221 12223445667777777776654
No 305
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.51 E-value=0.83 Score=49.83 Aligned_cols=112 Identities=14% Similarity=0.049 Sum_probs=75.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHH-HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q 002273 329 LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKA-VECYQMALSIKPNFSQSLNNLGVVYTVQGKM 407 (944)
Q Consensus 329 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 407 (944)
.|......|+.+.|...+.+++.+.....-. ... ...+-.+ ...+++.. ..+...++..+...|++
T Consensus 121 ~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~--~~~-----~~~w~~~~r~~l~~~~------~~a~~~~~~~~l~~g~~ 187 (388)
T 2ff4_A 121 AGVHAAAAGRFEQASRHLSAALREWRGPVLD--DLR-----DFQFVEPFATALVEDK------VLAHTAKAEAEIACGRA 187 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTG--GGT-----TSTTHHHHHHHHHHHH------HHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhcCCCCCC--CCC-----chhHHHHHHHHHHHHH------HHHHHHHHHHHHHCCCH
Confidence 3344445678888888888888774322100 000 0111111 11111111 23455677888899999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002273 408 DAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLK 453 (944)
Q Consensus 408 ~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~ 453 (944)
.+|+..+++++..+|-+..++..+..+|...|+..+|++.|+++.+
T Consensus 188 ~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 188 SAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999988754
No 306
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.39 E-value=0.86 Score=49.69 Aligned_cols=96 Identities=15% Similarity=0.054 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHhCCHHHHHHHHH
Q 002273 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGN----------------------VEAHIGKGICLQMQNMGRLAFDSFS 106 (944)
Q Consensus 49 ~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~----------------------~~~~~~la~~~~~~g~~~~A~~~~~ 106 (944)
+.+...|......|+.++|...+++++...... ..+...++..+...|++.+|+..+.
T Consensus 116 ~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~ 195 (388)
T 2ff4_A 116 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE 195 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 344555666677899999999999999874321 1223346667788999999999999
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 002273 107 EAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALS 144 (944)
Q Consensus 107 ~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 144 (944)
+++..+|-+-.++..+..++...|+..+|+..|+++.+
T Consensus 196 ~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 196 ALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988644
No 307
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.24 E-value=18 Score=43.39 Aligned_cols=167 Identities=11% Similarity=0.122 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHhCC---C---CH----HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHCCCH
Q 002273 306 NQGVAYYKKALYYNW---H---YA----DAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHC--AEACNNLGVIYKDRDNL 373 (944)
Q Consensus 306 ~~A~~~~~~al~~~p---~---~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~~la~~~~~~g~~ 373 (944)
.+++.++...+.... . .. .+-..+|.++...++ +++.+.+...+..+... ..+-+.+|.++...|+-
T Consensus 428 ~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~ 506 (963)
T 4ady_A 428 RDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKP 506 (963)
T ss_dssp HHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH
T ss_pred HHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH
Confidence 456666666665432 0 11 244466666665554 45666666666543321 13455677777778886
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHH
Q 002273 374 DKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAE----AYNNLGVLYRDAGSISLAIDAYE 449 (944)
Q Consensus 374 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~----a~~~la~~~~~~g~~~eA~~~~~ 449 (944)
+....++..+.+...+...-...+|..+...|+.+.+....+..... . ++. +-+.+|..|...|+...-.+.+.
T Consensus 507 ~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~-dp~vRygaa~alglAyaGTGn~~aIq~LL~ 584 (963)
T 4ady_A 507 EAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLAS-D-ESLLRYGGAFTIALAYAGTGNNSAVKRLLH 584 (963)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-S-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-C-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 66666666555533322222233444444567776666665554432 2 232 23456677778888643333555
Q ss_pred HHHhhCCCChhhhhhHHHHhhhccCCCh
Q 002273 450 QCLKIDPDSRNAGQNRLLAMNYINEGHD 477 (944)
Q Consensus 450 ~al~l~P~~~~a~~~~~~~~~~~~~~~~ 477 (944)
.+.+ +++ ...+..-.+++..+..++.
T Consensus 585 ~~~~-d~~-d~VRraAViaLGlI~~g~~ 610 (963)
T 4ady_A 585 VAVS-DSN-DDVRRAAVIALGFVLLRDY 610 (963)
T ss_dssp HHHH-CSC-HHHHHHHHHHHHHHTSSSC
T ss_pred Hhcc-CCc-HHHHHHHHHHHHhhccCCH
Confidence 5543 333 2344444555555544443
No 308
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A*
Probab=92.57 E-value=0.32 Score=51.77 Aligned_cols=90 Identities=13% Similarity=0.236 Sum_probs=54.2
Q ss_pred HHHHHHHhHc--CCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCCCCccc
Q 002273 700 QVWARILCAV--PNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTT 777 (944)
Q Consensus 700 ~~~~~il~~~--p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~~~~t 777 (944)
+-|+++.+.. .+.++++..++ +..++... .+.+ +. ..+.+.|... -.+..+.+..||+++-. -.|+.
T Consensus 197 ~~~~~l~~~L~~~~~~vvl~~g~---~~e~~~~~-~i~~-~~--~~~~l~g~~s-l~el~ali~~a~l~I~~---DSG~~ 265 (326)
T 2gt1_A 197 EHWRELIGLLADSGIRIKLPWGA---PHEEERAK-RLAE-GF--AYVEVLPKMS-LEGVARVLAGAKFVVSV---DTGLS 265 (326)
T ss_dssp HHHHHHHHHTTTTCCEEEECCSS---HHHHHHHH-HHHT-TC--TTEEECCCCC-HHHHHHHHHTCSEEEEE---SSHHH
T ss_pred HHHHHHHHHHHHCCCcEEEecCC---HHHHHHHH-HHHh-hC--CcccccCCCC-HHHHHHHHHhCCEEEec---CCcHH
Confidence 4455554443 36677765222 12332222 2222 22 2356667654 68999999999999821 14556
Q ss_pred HHHhhhcCCcEEecCCCcccccch
Q 002273 778 TCESLYMGVPCVTMAGSVHAHNVG 801 (944)
Q Consensus 778 ~~eal~~gvPvvt~~g~~~~~r~~ 801 (944)
-+ |.++|+|+|++-|.+...|.+
T Consensus 266 Hl-Aaa~g~P~v~lfg~t~p~~~~ 288 (326)
T 2gt1_A 266 HL-TAALDRPNITVYGPTDPGLIG 288 (326)
T ss_dssp HH-HHHTTCCEEEEESSSCHHHHC
T ss_pred HH-HHHcCCCEEEEECCCChhhcC
Confidence 66 666999999998887665543
No 309
>3hbm_A UDP-sugar hydrolase; PSEG; 1.80A {Campylobacter jejuni subsp} PDB: 3hbn_A*
Probab=92.18 E-value=0.2 Score=51.90 Aligned_cols=77 Identities=8% Similarity=-0.009 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecCCCcccccchhHHH
Q 002273 726 VRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHAHNVGVSLL 805 (944)
Q Consensus 726 ~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~~r~~~~~l 805 (944)
..+++++..+.. .++.+.+.+. +....|..+|+++- .||+|+.|++++|+|+|..+=... .+.-+..|
T Consensus 196 ~~~~l~~~~~~~----~~v~v~~~~~---~m~~~m~~aDlvI~----~gG~T~~E~~~~g~P~i~ip~~~~-Q~~nA~~l 263 (282)
T 3hbm_A 196 NLKKLQKFAKLH----NNIRLFIDHE---NIAKLMNESNKLII----SASSLVNEALLLKANFKAICYVKN-QESTATWL 263 (282)
T ss_dssp THHHHHHHHHTC----SSEEEEESCS---CHHHHHHTEEEEEE----ESSHHHHHHHHTTCCEEEECCSGG-GHHHHHHH
T ss_pred HHHHHHHHHhhC----CCEEEEeCHH---HHHHHHHHCCEEEE----CCcHHHHHHHHcCCCEEEEeCCCC-HHHHHHHH
Confidence 355665555442 3688877754 45566788999996 366899999999999888764332 23455666
Q ss_pred hhcCCcccc
Q 002273 806 TKVGLKHLI 814 (944)
Q Consensus 806 ~~~gl~~~v 814 (944)
...|...++
T Consensus 264 ~~~G~~~~~ 272 (282)
T 3hbm_A 264 AKKGYEVEY 272 (282)
T ss_dssp HHTTCEEEC
T ss_pred HHCCCEEEc
Confidence 666665544
No 310
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.97 E-value=0.27 Score=54.60 Aligned_cols=129 Identities=13% Similarity=0.069 Sum_probs=61.1
Q ss_pred HHHHcCChHHHHHHHHHHHh-----------hCCCCHHHHHHHHHHHHHCCCHHHHH----------HHHHHHHhh----
Q 002273 332 AYGEMLKFDMAIVFYELAFH-----------FNPHCAEACNNLGVIYKDRDNLDKAV----------ECYQMALSI---- 386 (944)
Q Consensus 332 ~~~~~g~~~~A~~~~~~al~-----------~~p~~~~~~~~la~~~~~~g~~~~A~----------~~~~~al~~---- 386 (944)
.+...+++++|.++-...+. ++.-.+.+|+.++.++...|+..+.. ..+-.++..
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr 224 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK 224 (523)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Confidence 34556677777766655441 13334667777777777777665432 222223322
Q ss_pred -CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 002273 387 -KPN-FSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTY-------AEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPD 457 (944)
Q Consensus 387 -~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~-------~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~ 457 (944)
++. ....+..+-+.|...+.+++|..+..++. .|.. ...++.+|+++.-.++|.+|.+++..|+...|.
T Consensus 225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~ 302 (523)
T 4b4t_S 225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPH 302 (523)
T ss_dssp SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSC
T ss_pred cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 222 24577788889999999999999999884 4432 455778899999999999999999999999887
Q ss_pred Chhhh
Q 002273 458 SRNAG 462 (944)
Q Consensus 458 ~~~a~ 462 (944)
+..+.
T Consensus 303 ~~~a~ 307 (523)
T 4b4t_S 303 NSKSL 307 (523)
T ss_dssp SSSCS
T ss_pred chhhh
Confidence 65443
No 311
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.77 E-value=2.3 Score=47.35 Aligned_cols=134 Identities=11% Similarity=0.018 Sum_probs=63.6
Q ss_pred HHHHHhCCCHHHHHHHHHHHHH-----------hCCCCHHHHHHHHHHHHHhCCHHHHH----------HHHHHHHh---
Q 002273 55 ANILRSRNKFVDALALYEIVLE-----------KDSGNVEAHIGKGICLQMQNMGRLAF----------DSFSEAVK--- 110 (944)
Q Consensus 55 A~~~~~~g~~~~A~~~~~~al~-----------~~p~~~~~~~~la~~~~~~g~~~~A~----------~~~~~al~--- 110 (944)
-..++.+++|++|.++...++. .++-.+..|+..+.++...|+..... ..+..+++
T Consensus 143 ~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~ 222 (523)
T 4b4t_S 143 QLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIAS 222 (523)
T ss_dssp ------------------------------------------------------------CHHHHHHHHTHHHHHHHHCC
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHh
Confidence 4456778999999988876651 12335677888888888777765532 22222332
Q ss_pred --cCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Q 002273 111 --LDPQ-NACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKID 187 (944)
Q Consensus 111 --~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 187 (944)
.++. ....+..+-..|...+.+++|..+..++. .|.........+..++.+|.++..+++|.+|.+++..|+...
T Consensus 223 lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rka 300 (523)
T 4b4t_S 223 LKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKA 300 (523)
T ss_dssp SCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSC
T ss_pred cccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 1222 24567778899999999999999999984 565433334567788899999999999999999999999987
Q ss_pred CCC
Q 002273 188 PHY 190 (944)
Q Consensus 188 p~~ 190 (944)
|.+
T Consensus 301 p~~ 303 (523)
T 4b4t_S 301 PHN 303 (523)
T ss_dssp SCS
T ss_pred Ccc
Confidence 754
No 312
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.76 E-value=17 Score=45.70 Aligned_cols=142 Identities=11% Similarity=-0.029 Sum_probs=89.1
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHH
Q 002273 85 HIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLG 164 (944)
Q Consensus 85 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg 164 (944)
...+...+...+.++-+.+ .+...|.++...+.+|.++...|++++|..+|+++-..........
T Consensus 815 ~~~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~----------- 879 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQF----------- 879 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSC-----------
T ss_pred HHHHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhh-----------
Confidence 3345556777888876654 3445677887889999999999999999999988743221111000
Q ss_pred HHHHHcCChHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CH----HHHHHHHHHHH
Q 002273 165 TSLKLAGNTQDGIQKYYEALKI---DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPM-YA----EAYCNMGVIYK 236 (944)
Q Consensus 165 ~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~----~~~~~la~~~~ 236 (944)
....+ ....... ....+..|..+..++.+.+.++.+++..+.+++..+. +. ..|.++-..+.
T Consensus 880 ------~~~~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L 949 (1139)
T 4fhn_B 880 ------AVLRE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTAC 949 (1139)
T ss_dssp ------SSHHH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHH
T ss_pred ------hhhcc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHH
Confidence 00000 0111111 2223445666677777888888888888888876543 22 25666777778
Q ss_pred HcCCHHHHHHHHHHH
Q 002273 237 NRGDLESAIACYERC 251 (944)
Q Consensus 237 ~~g~~~~A~~~~~~a 251 (944)
..|+|++|...+...
T Consensus 950 ~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 950 AAGKFDAAHVALMVL 964 (1139)
T ss_dssp HHCCSGGGGHHHHHH
T ss_pred hhCCHHHHHHHHHhC
Confidence 888888887776544
No 313
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=91.37 E-value=0.78 Score=51.45 Aligned_cols=75 Identities=23% Similarity=0.278 Sum_probs=35.7
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 002273 361 NNLGVIYKDRDNLDKAVECYQMALSIKPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLY 435 (944)
Q Consensus 361 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~ 435 (944)
..+|.+......++.|..+|.+|..+.|++...++.||.+....|+.-+|+-+|-+++......+.+..++..++
T Consensus 156 ~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f 230 (497)
T 1ya0_A 156 VHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHH
Confidence 344444444444444555555555555555555555555544444444454444444444333444444444443
No 314
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=91.17 E-value=0.7 Score=51.81 Aligned_cols=76 Identities=21% Similarity=0.232 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChhhhhhHHHH
Q 002273 393 SLNNLGVVYTVQGKMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKIDPDSRNAGQNRLLA 468 (944)
Q Consensus 393 ~~~~la~~~~~~g~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~P~~~~a~~~~~~~ 468 (944)
.+..+|.+......++.|..+|.+|..+.|++...+..||.+....|+.-+|+-+|-+++......+.+..|+...
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~ 229 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKA 229 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHH
Confidence 6678999999999999999999999999999999999999999999999999999999999988888888886543
No 315
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=91.13 E-value=2.3 Score=51.34 Aligned_cols=99 Identities=4% Similarity=-0.135 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Q 002273 49 KDALSYANILRSRNKFVDALALYEIVLEK----DSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD-PQNACAHTHCG 123 (944)
Q Consensus 49 ~~~~~~A~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la 123 (944)
..+..+-..+.+.|+.++|..+|+++-+. -.-+...|..+...|.+.|+.++|.++|+++.+.. .-+...|..+-
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 34777888999999999999999876532 34478899999999999999999999999998753 23567788888
Q ss_pred HHHHHcCCH-HHHHHHHHHHHHcCC
Q 002273 124 ILYKDEGRL-VEAAESYHKALSADP 147 (944)
Q Consensus 124 ~~~~~~g~~-~~A~~~~~~al~~~p 147 (944)
.++.+.|+. ++|.+.+++..+..-
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~kG~ 232 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQEGL 232 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTC
T ss_pred HHHHhCCCcHHHHHHHHHHHHHcCC
Confidence 899999984 788999999987643
No 316
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=90.72 E-value=3.6 Score=49.70 Aligned_cols=97 Identities=7% Similarity=-0.077 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhh----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-CCCHHHHHHHH
Q 002273 324 DAMYNLGVAYGEMLKFDMAIVFYELAFHF----NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSIK-PNFSQSLNNLG 398 (944)
Q Consensus 324 ~~~~~la~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la 398 (944)
..+..+...|.+.|+.++|..++.+..+. -.-+...|+.+...|.+.|+.++|.+.|++..+.. .-+...|..+-
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 35666777777777777777777654432 23346677777777777777777777777776542 22456666666
Q ss_pred HHHHHcCCH-HHHHHHHHHHHHh
Q 002273 399 VVYTVQGKM-DAAAEMIEKAIAA 420 (944)
Q Consensus 399 ~~~~~~g~~-~~A~~~l~~al~~ 420 (944)
.++.+.|+. ++|.++|++..+.
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHHHHc
Confidence 677777763 5677777777665
No 317
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.28 E-value=5.8 Score=49.91 Aligned_cols=147 Identities=10% Similarity=-0.012 Sum_probs=99.4
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---C------------------
Q 002273 54 YANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKL---D------------------ 112 (944)
Q Consensus 54 ~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~------------------ 112 (944)
+...+...+.++-|.+ .+...|.++...+.+|.++...|++++|..+|+++-.. +
T Consensus 818 l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~ 893 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 893 (1139)
T ss_dssp HHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTT
T ss_pred HHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccc
Confidence 4455666677765544 34556778888899999999999999999999987421 0
Q ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 002273 113 --PQNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKIDPHY 190 (944)
Q Consensus 113 --p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 190 (944)
...+..|..+..++.+.+.++.+++..+.|++..+.+... .....+..+-..+...|+|++|...+...-.. ...
T Consensus 894 ~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~--~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~-~~r 970 (1139)
T 4fhn_B 894 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDED--LSIAITHETLKTACAAGKFDAAHVALMVLSTT-PLK 970 (1139)
T ss_dssp SCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHH--HHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS-SSC
T ss_pred ccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChh--hHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH-HHH
Confidence 1123456777788888999999999999998876544332 12334666667778889999988877554322 223
Q ss_pred HHHHHHHHHHHHHcCCH
Q 002273 191 APAYYNLGVVYSELMQY 207 (944)
Q Consensus 191 ~~~~~~la~~~~~~g~~ 207 (944)
...+..+-..+++.|+.
T Consensus 971 ~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 971 KSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp HHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHhCCCh
Confidence 44555555555555543
No 318
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.06 E-value=1.3 Score=48.96 Aligned_cols=103 Identities=12% Similarity=-0.091 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHH
Q 002273 83 EAHIGKGICLQMQNMGRLAFDSFSEAVKLDP---QNACAHTHCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIV 159 (944)
Q Consensus 83 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 159 (944)
.++..+|..|...|++++|.+.|.++..... .-.+.+.....++...+++..+...+.++........+ +.....+
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d-~~~~~~l 210 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGD-WERRNRY 210 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCC-THHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCC-HHHHHHH
Confidence 3556666666666666666666666655322 22345555566666666666666666666443222111 1122233
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhh
Q 002273 160 LTDLGTSLKLAGNTQDGIQKYYEALKI 186 (944)
Q Consensus 160 ~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (944)
....|..+...++|.+|-..|.+++..
T Consensus 211 k~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 333444455555555555555554443
No 319
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.37 E-value=2.9 Score=46.21 Aligned_cols=101 Identities=12% Similarity=-0.019 Sum_probs=81.1
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCCH----HH
Q 002273 48 GKDALSYANILRSRNKFVDALALYEIVLEKDS---GNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLD--PQNA----CA 118 (944)
Q Consensus 48 ~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~----~~ 118 (944)
......+|..+++.|++++|.+.|.++..... ...+.++....++...+++..+...+.++.... ..++ ..
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 44678899999999999999999999987543 246888899999999999999999999986542 2222 34
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 002273 119 HTHCGILYKDEGRLVEAAESYHKALSADPS 148 (944)
Q Consensus 119 ~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 148 (944)
....|.++...++|.+|...|-.++.....
T Consensus 211 k~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~ 240 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAKLLVDSLATFTS 240 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHhccCCc
Confidence 455677788899999999999988776544
No 320
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=87.36 E-value=0.00017 Score=78.05 Aligned_cols=143 Identities=15% Similarity=0.145 Sum_probs=88.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhhcCCCCCchhHHHhhhcCCHHHHH
Q 002273 230 NMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNNMAIALTDLGTKTYGRALLLFRLNGSNFQSPFFELVKLEGDINQGV 309 (944)
Q Consensus 230 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~A~ 309 (944)
.|+.++..+|+|..|++.-+++ ++...|.....+..+.+....+..--............+...|...|.+++-+
T Consensus 175 kLAstLV~L~~yq~AVdaArKA-----ns~ktWKeV~~ACvd~~EfrLAqicGLniIvhadeL~elv~~YE~~G~f~ELI 249 (624)
T 3lvg_A 175 RLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELI 249 (624)
T ss_dssp TTSSSSSSCSGGGSSTTTTTTC-----CSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTST
T ss_pred HHHHHHHHHHHHHHHHHHHHhc-----CChhHHHHHHHHHhCchHHHHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHH
Confidence 3444555555555555443332 33334444444444444443333333333444555566777789999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh-C-CC------CHHHHHHHHHHHHHCCCHHHHHH
Q 002273 310 AYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFYELAFHF-N-PH------CAEACNNLGVIYKDRDNLDKAVE 378 (944)
Q Consensus 310 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~-p~------~~~~~~~la~~~~~~g~~~~A~~ 378 (944)
.+++..+.....+......||.+|.+- +.++-.++++..... + |. ....|..+..+|..-.+++.|..
T Consensus 250 sLlEaglglErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 250 TMLEAALGLERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp TTHHHHTTSTTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHhCCCchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 999999998888999999999988765 455555554432221 1 22 24467778888888888887754
No 321
>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ...
Probab=87.05 E-value=3.8 Score=48.17 Aligned_cols=112 Identities=16% Similarity=0.052 Sum_probs=69.9
Q ss_pred CCeEEEecCCC--CcCCHHH-HHH---HHHHHhHcC-----CceEEEecCCCCCHHHHHHHHHHHHHc--------CCCC
Q 002273 681 GFITFGSFNNL--AKITPKV-LQV---WARILCAVP-----NSRLVVKCKPFCCDSVRHRFLSTLEQL--------GLES 741 (944)
Q Consensus 681 ~~~~f~~~~~~--~K~~~~~-~~~---~~~il~~~p-----~~~l~~~~~~~~~~~~~~~~~~~~~~~--------gi~~ 741 (944)
+.++.|-.-|+ +|...-. +.. +.+|+. .| ..++++.|++.........+.+.+... .| +
T Consensus 549 d~l~~g~vkRl~eYKRq~L~~l~~i~~~~~i~~-~~~~~~~p~q~If~GKA~P~y~~aK~iIkli~~va~~in~Dp~v-~ 626 (824)
T 2gj4_A 549 NSLFDVQVKRIHEYKRQLLNCLHVITLYNRIKK-EPNKFVVPRTVMIGGKAAPGYHMAKMIIKLITAIGDVVNHDPVV-G 626 (824)
T ss_dssp TSEEEEEESCCCGGGTHHHHHHHHHHHHHHHHH-CTTSCCCCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCTTT-G
T ss_pred CcceEeeeecchhhcchhhHHHHHHHHHHHHHh-CCCCCCCCEEEEEEEeCCHhHHHHHHHHHHHHHHHHHhccCccc-C
Confidence 34555555555 7776554 444 444444 44 457888877664444444444444432 23 4
Q ss_pred C--cEEEccCccCcHHHHHhcccccEEecCCC--C-CCcccHHHhhhcCCc-EEecCCCc
Q 002273 742 L--RVDLLPLILLNHDHMQAYSLMDISLDTFP--Y-AGTTTTCESLYMGVP-CVTMAGSV 795 (944)
Q Consensus 742 ~--rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~--~-~~~~t~~eal~~gvP-vvt~~g~~ 795 (944)
+ +|+|++.-. ..---..+..|||+|-++- + ..||+-+=+|.-|++ ++|+.|-.
T Consensus 627 ~~lKVvFl~nYd-vslA~~I~~gaDv~l~~S~ag~EAsGTs~MKamlNGaLtigtlDGan 685 (824)
T 2gj4_A 627 DRLRVIFLENYR-VSLAEKVIPAADLSEQISTAGTEASGTGNMKFMLNGALTIGTMDGAN 685 (824)
T ss_dssp GGEEEEEETTCC-HHHHHHHGGGCSEEEECCCTTSCSCCSHHHHHHHTTCEEEECSCTTH
T ss_pred CceEEEEECCCC-HHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCceEEEEecCcc
Confidence 6 899987522 1222235688999999885 7 889999999999965 66777643
No 322
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=86.77 E-value=33 Score=35.82 Aligned_cols=41 Identities=20% Similarity=0.109 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Q 002273 306 NQGVAYYKKALYYNWHYADAMYNLGVAYGEMLKFDMAIVFY 346 (944)
Q Consensus 306 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~ 346 (944)
.+|+.+-.+.-...-.+++.+..+|..|.+.+++.+|..+|
T Consensus 119 ~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 119 KEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 44444444321223357889999999999999999988877
No 323
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like fold, endoplasmic reticulum, glycosyltransferase, structural genomics; NMR {Saccharomyces cerevisiae} PDB: 2ks6_A
Probab=84.96 E-value=0.65 Score=45.97 Aligned_cols=65 Identities=14% Similarity=0.138 Sum_probs=44.3
Q ss_pred cEEEccCccCcHHHHHhcc-cccEEecCCCCCCcccHHHhhhcCCcEEecCCCccc---ccchhHHHhhcCCccc
Q 002273 743 RVDLLPLILLNHDHMQAYS-LMDISLDTFPYAGTTTTCESLYMGVPCVTMAGSVHA---HNVGVSLLTKVGLKHL 813 (944)
Q Consensus 743 rv~~~~~~~~~~~~~~~~~-~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~~~~---~r~~~~~l~~~gl~~~ 813 (944)
++...++.+ +....+. .||+++- -+|.+|++|++++|+|.|..|-.... ...-|..|...|..-.
T Consensus 115 ~v~v~~f~~---~m~~~l~~~AdlvIs---haGagTv~Eal~~G~P~IvVP~~~~~~~HQ~~nA~~l~~~G~~~~ 183 (224)
T 2jzc_A 115 KVIGFDFST---KMQSIIRDYSDLVIS---HAGTGSILDSLRLNKPLIVCVNDSLMDNHQQQIADKFVELGYVWS 183 (224)
T ss_dssp EEEECCSSS---SHHHHHHHHCSCEEE---SSCHHHHHHHHHTTCCCCEECCSSCCCCHHHHHHHHHHHHSCCCE
T ss_pred eEEEeeccc---hHHHHHHhcCCEEEE---CCcHHHHHHHHHhCCCEEEEcCcccccchHHHHHHHHHHCCCEEE
Confidence 555556654 4445667 8999982 37888999999999999998874322 2223556666677533
No 324
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=79.98 E-value=59 Score=33.60 Aligned_cols=82 Identities=11% Similarity=-0.102 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHhhCCCCHHHHHHH
Q 002273 321 HYADAMYNLGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDR---DNLDKAVECYQMALSIKPNFSQSLNNL 397 (944)
Q Consensus 321 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~l 397 (944)
.+++.+..+|..|.+.+++.+|..+|-..- .++++.+..+-.-+... |...+ .+.+...
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~---~~s~~~~a~~l~~w~~~~~~~~~~e---------------~dlf~~R 193 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFMLGT---HDSMIKYVDLLWDWLCQVDDIEDST---------------VAEFFSR 193 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTSC---HHHHHHHHHHHHHHHHHTTCCCHHH---------------HHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHhCC---CccHHHHHHHHHHHHHhcCCCCcch---------------HHHHHHH
Confidence 578999999999999999999888775211 11233332222222222 32222 2233333
Q ss_pred HH-HHHHcCCHHHHHHHHHHHHHh
Q 002273 398 GV-VYTVQGKMDAAAEMIEKAIAA 420 (944)
Q Consensus 398 a~-~~~~~g~~~~A~~~l~~al~~ 420 (944)
+. .|...|+...|...+....+.
T Consensus 194 aVL~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 194 LVFNYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp HHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHH
Confidence 32 366789999988888776543
No 325
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=79.82 E-value=0.002 Score=69.90 Aligned_cols=205 Identities=12% Similarity=0.056 Sum_probs=125.1
Q ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 002273 46 FEGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGIL 125 (944)
Q Consensus 46 ~~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 125 (944)
..+..|..+|...+..++..+|++.|-++ +++..+.....+..+.|++++=+.+++-+-+. -..+.+-..|..+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA-----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~ke~~IDteLi~a 125 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKK-ARESYVETELIFA 125 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCC-----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-CCSTTTTHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhC-----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hcccccHHHHHHH
Confidence 45667888888888888888888877554 33334455555666778888777776655443 3344444556666
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHh--------------------
Q 002273 126 YKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALK-------------------- 185 (944)
Q Consensus 126 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~-------------------- 185 (944)
|.+.++..+-.+.+ ..|+..+ ....|.-++..|.|+.|.-+|...-.
T Consensus 126 yAk~~rL~elEefl-----~~~N~A~--------iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVda 192 (624)
T 3lvg_A 126 LAKTNRLAELEEFI-----NGPNNAH--------IQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDG 192 (624)
T ss_dssp HHTSCSSSTTTSTT-----SCCSSSC--------THHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTT
T ss_pred HHhhCcHHHHHHHH-----cCCCccc--------HHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHH
Confidence 66666654322221 1222222 23344444555555554444432110
Q ss_pred -hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH
Q 002273 186 -IDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYERCLAVSPNFEIAKNN 264 (944)
Q Consensus 186 -~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 264 (944)
...++..+|......+...+++.-|--+--.++-. ++. +-.+...|...|.+++-+..++..+.+...+......
T Consensus 193 ArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh-ade---L~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTE 268 (624)
T 3lvg_A 193 ARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-ADE---LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTE 268 (624)
T ss_dssp TTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-SSC---CSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHH
T ss_pred HHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc-HHH---HHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHH
Confidence 01244556767777777777777666555554432 221 2234556778899999999999999988888888999
Q ss_pred HHHHHHHhh
Q 002273 265 MAIALTDLG 273 (944)
Q Consensus 265 la~~l~~~~ 273 (944)
++.+|.+-.
T Consensus 269 LaILYsKY~ 277 (624)
T 3lvg_A 269 LAILYSKFK 277 (624)
T ss_dssp HHHHHHSSC
T ss_pred HHHHHHhcC
Confidence 998887654
No 326
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=77.10 E-value=74 Score=33.15 Aligned_cols=27 Identities=22% Similarity=0.290 Sum_probs=21.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 002273 222 PMYAEAYCNMGVIYKNRGDLESAIACY 248 (944)
Q Consensus 222 p~~~~~~~~la~~~~~~g~~~~A~~~~ 248 (944)
-.+++.+..+|..|.+.+++.+|...|
T Consensus 133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 133 AGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp TCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 357788888888888888888887776
No 327
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=70.30 E-value=1e+02 Score=31.75 Aligned_cols=47 Identities=9% Similarity=-0.015 Sum_probs=31.3
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQNMGRLAFDSFSE 107 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 107 (944)
..+..+..-......|+|=+|.+.++.+.. =|.+++++++|++++..
T Consensus 12 ~~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~--------------Ry~~~~~~~eAidlL~~ 58 (312)
T 2wpv_A 12 KLAKTLQRFENKIKAGDYYEAHQTLRTIAN--------------RYVRSKSYEHAIELISQ 58 (312)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--------------HHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccChHHHHHHHHHHHH--------------HHHHhcCHHHHHHHHHH
Confidence 355566666777777888888877776533 24566777777776544
No 328
>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae}
Probab=69.73 E-value=27 Score=40.93 Aligned_cols=110 Identities=15% Similarity=0.035 Sum_probs=70.6
Q ss_pred CeEEEecCCC--CcCCHH-HHHHHHHHHh--HcC-----CceEEEecCCCCCHHHHHHHHHHHHHc--------CCCCC-
Q 002273 682 FITFGSFNNL--AKITPK-VLQVWARILC--AVP-----NSRLVVKCKPFCCDSVRHRFLSTLEQL--------GLESL- 742 (944)
Q Consensus 682 ~~~f~~~~~~--~K~~~~-~~~~~~~il~--~~p-----~~~l~~~~~~~~~~~~~~~~~~~~~~~--------gi~~~- 742 (944)
.+++|-.-|+ +|...- ++.+..++++ ..| ..++++.|++.........+.+.+... -+ ++
T Consensus 516 ~l~~~~vkRlheYKRq~Lnil~ii~~~~~i~~~~~~~~~p~q~If~GKA~P~y~~aK~iIk~i~~va~~in~dp~~-~~~ 594 (796)
T 2c4m_A 516 SIFDVQIKRLHEYKRQLMNALYVLDLYFRIKEDGLTDIPARTVIFGAKAAPGYVRAKAIIKLINSIADLVNNDPEV-SPL 594 (796)
T ss_dssp SEEEEEECCCCGGGTHHHHHHHHHHHHHHHHTSCCCSSCCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHTCTTT-TTT
T ss_pred CcEEEEeecchhhcccCEeHHHHHHHHHHHhhCCCCCCCCeEEEEEecCCHhHHHHHHHHHHHHHHHHHhcccccc-CCc
Confidence 3455555555 887766 5666555442 223 367777777655545555555555544 34 57
Q ss_pred -cEEEccCccCcHHHHHhcccccEEecCCC--C-CCcccHHHhhhcCCcEE-ecCC
Q 002273 743 -RVDLLPLILLNHDHMQAYSLMDISLDTFP--Y-AGTTTTCESLYMGVPCV-TMAG 793 (944)
Q Consensus 743 -rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~--~-~~~~t~~eal~~gvPvv-t~~g 793 (944)
+|+|++.-. ..---..+..|||+|-++- + ..||+-+=+|.-|++.| |+.|
T Consensus 595 lKVvFl~nY~-vslA~~I~~gaDv~l~~S~a~~EAsGTs~MKam~NGaL~iGtLDG 649 (796)
T 2c4m_A 595 LKVVFVENYN-VSPAEHILPASDVSEQISTAGKEASGTSNMKFMMNGALTLGTMDG 649 (796)
T ss_dssp EEEEEETTCC-HHHHHHHGGGCSEEEECCCTTSCSCCHHHHHHHHTTCEEEEESST
T ss_pred eEEEEECCCC-HHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCCeEEeccCC
Confidence 899987532 2222335688999999885 7 88999999999998866 3334
No 329
>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A*
Probab=67.62 E-value=34 Score=40.12 Aligned_cols=106 Identities=15% Similarity=0.004 Sum_probs=68.2
Q ss_pred CeEEEecCCC--CcCCHH-HHHHHHHH---HhHc----CCceEEEecCCCCCHHHHHHHHHHHHHc--------CCCCC-
Q 002273 682 FITFGSFNNL--AKITPK-VLQVWARI---LCAV----PNSRLVVKCKPFCCDSVRHRFLSTLEQL--------GLESL- 742 (944)
Q Consensus 682 ~~~f~~~~~~--~K~~~~-~~~~~~~i---l~~~----p~~~l~~~~~~~~~~~~~~~~~~~~~~~--------gi~~~- 742 (944)
.++.|-.-|+ +|...- ++.+..++ +..- ...++++.|++.........+.+.+... -+ ++
T Consensus 526 ~l~~~~vkRl~eYKRq~Lnil~ii~~~~~i~~~~~~~~~p~q~If~GKA~P~y~~aK~iIk~i~~va~~in~Dp~~-~~~ 604 (796)
T 1l5w_A 526 AIFDIQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGYYLAKNIIFAINKVADVINNDPLV-GDK 604 (796)
T ss_dssp SEEEEEESCCCGGGTHHHHHHHHHHHHHHHHTCTTCCCCCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHTCTTT-GGG
T ss_pred cceEeeeecchhhcccCEeHHHHHHHHHHHhcCCCCCCCCeEEEEEecCChhHHHHHHHHHHHHHHHHHhcccccc-CCc
Confidence 4455555555 787766 45554444 3321 2367777777655545555555555544 34 56
Q ss_pred -cEEEccCccCcHHHHHhcccccEEecCCC--C-CCcccHHHhhhcCCcEE
Q 002273 743 -RVDLLPLILLNHDHMQAYSLMDISLDTFP--Y-AGTTTTCESLYMGVPCV 789 (944)
Q Consensus 743 -rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~--~-~~~~t~~eal~~gvPvv 789 (944)
+|+|++.-. ..---..+..|||+|-++- + ..||+-+=+|.-|++.|
T Consensus 605 lKVvfl~nY~-vslA~~I~~gaDv~l~~S~a~~EAsGTs~MKam~NGaL~i 654 (796)
T 1l5w_A 605 LKVVFLPDYC-VSAAEKLIPAADISEQISTAGKEASGTGNMKLALNGALTV 654 (796)
T ss_dssp EEEEECSSCC-HHHHHHHGGGCSEEEECCCTTTCCCCSHHHHHHHTTCEEE
T ss_pred eEEEEECCCC-HHHHHHHhhhcceeecCCCCCCCCCchHHHHHHHcCCeee
Confidence 899987532 2222235688999999885 7 88999999999998866
No 330
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=62.36 E-value=44 Score=30.77 Aligned_cols=66 Identities=17% Similarity=0.147 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHcCCCCCcEEEccCccC-------cHHHHHhcccccEE---ecCC--CCCCcccHHH---hhhcCCcEE
Q 002273 725 SVRHRFLSTLEQLGLESLRVDLLPLILL-------NHDHMQAYSLMDIS---LDTF--PYAGTTTTCE---SLYMGVPCV 789 (944)
Q Consensus 725 ~~~~~~~~~~~~~gi~~~rv~~~~~~~~-------~~~~~~~~~~~Di~---Ld~~--~~~~~~t~~e---al~~gvPvv 789 (944)
...+++.+.+++.|+. +|.|.... ...-+..+..||++ |||| +..-..|..| |.+.|.|||
T Consensus 27 ~~~~~l~~~l~~~G~~----v~~P~~~~~~~~~~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~AlgKPVi 102 (161)
T 2f62_A 27 SYYNKVRELLKKENVM----PLIPTDNEATEALDIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALNKMVL 102 (161)
T ss_dssp HHHHHHHHHHHTTTCE----EECTTTTCCSSHHHHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHCCCE----EECCCccCcchHHHHHHHHHHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHCCCEEE
Confidence 4557788888888873 45554311 11226677889998 4544 2223347777 677999999
Q ss_pred ecCCC
Q 002273 790 TMAGS 794 (944)
Q Consensus 790 t~~g~ 794 (944)
.+..+
T Consensus 103 ~l~~d 107 (161)
T 2f62_A 103 TFTSD 107 (161)
T ss_dssp EECSC
T ss_pred EEEcC
Confidence 98754
No 331
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=60.81 E-value=52 Score=40.19 Aligned_cols=114 Identities=11% Similarity=0.051 Sum_probs=62.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCC--HHHHHHHHHHHHHcC
Q 002273 329 LGVAYGEMLKFDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI-KPNF--SQSLNNLGVVYTVQG 405 (944)
Q Consensus 329 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~--~~~~~~la~~~~~~g 405 (944)
+...+...|.++-|. +.+..-|.++..-+.+|.+|...|++++|..+|++|-.- .... .........+.-
T Consensus 816 l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~--- 888 (950)
T 4gq2_M 816 LVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE--- 888 (950)
T ss_dssp HHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHH---
T ss_pred HHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccC---
Confidence 455556666665443 345566667767777888888888888888888776421 1110 000000000000
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChh
Q 002273 406 KMDAAAEMIEKAIAANPTYAEAYNNLGVLYRDAGSISLAIDAYEQCLKID-PDSRN 460 (944)
Q Consensus 406 ~~~~A~~~l~~al~~~p~~~~a~~~la~~~~~~g~~~eA~~~~~~al~l~-P~~~~ 460 (944)
..+........|.....++...+-++-+++..+.|++.- ++++.
T Consensus 889 -----------~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~ 933 (950)
T 4gq2_M 889 -----------KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDED 933 (950)
T ss_dssp -----------HTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHH
T ss_pred -----------cccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCcc
Confidence 000011113456667777888888888888888888643 44443
No 332
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=60.81 E-value=1.3e+02 Score=29.63 Aligned_cols=60 Identities=13% Similarity=0.127 Sum_probs=42.9
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH-hCCHHHHHHHHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSG-NVEAHIGKGICLQM-QNMGRLAFDSFS 106 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~-~g~~~~A~~~~~ 106 (944)
+-+.++.+|...-+.++|++.....+++.+.++. +.+-...+..+|-. .|....+...+.
T Consensus 3 ~re~lv~~AklaeqaeRyddM~~~Mk~v~~~~~eLt~EERnLLSvAYKNvig~rR~swRiis 64 (248)
T 3uzd_A 3 DREQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRVIS 64 (248)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHH
Confidence 3467888899999999999999999999988775 56666667666643 244444444443
No 333
>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*
Probab=60.00 E-value=1.4e+02 Score=29.69 Aligned_cols=60 Identities=12% Similarity=0.151 Sum_probs=42.7
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHH-hCCHHHHHHHHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKD--SG-NVEAHIGKGICLQM-QNMGRLAFDSFS 106 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~--p~-~~~~~~~la~~~~~-~g~~~~A~~~~~ 106 (944)
+-+.++.+|...-+.++|++...+.+++.+.+ +. +.+-...+..+|-. .|....+...+.
T Consensus 7 ~re~~v~~AkLaeqaeRyddm~~~mk~v~~~~~~~eLt~EERnLLSvaYKNvig~rR~swRiis 70 (260)
T 1o9d_A 7 AREENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVEERNLLSVAYKNVIGARRASWRIIS 70 (260)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 45778889999999999999999999999977 54 56666666666532 233334444443
No 334
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=58.04 E-value=17 Score=31.01 Aligned_cols=77 Identities=9% Similarity=0.145 Sum_probs=50.4
Q ss_pred ceEEEec-CCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCCCCcccHHHhhh--cCCcE
Q 002273 712 SRLVVKC-KPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLY--MGVPC 788 (944)
Q Consensus 712 ~~l~~~~-~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~~~~t~~eal~--~gvPv 788 (944)
-+++++| .|.++.-+..++++.+.+.|++. .|.-.+. .++-.....+|++|-|.+...-..-++... .|+||
T Consensus 5 mkIlvvC~~G~~TSll~~kl~~~~~~~gi~~-~i~~~~~----~~~~~~~~~~D~Ii~t~~l~~~~~~~~~~~~~~~~pv 79 (109)
T 2l2q_A 5 MNILLVCGAGMSTSMLVQRIEKYAKSKNINA-TIEAIAE----TRLSEVVDRFDVVLLAPQSRFNKKRLEEITKPKGIPI 79 (109)
T ss_dssp EEEEEESSSSCSSCHHHHHHHHHHHHHTCSE-EEEEECS----TTHHHHTTTCSEEEECSCCSSHHHHHHHHHHHHTCCE
T ss_pred eEEEEECCChHhHHHHHHHHHHHHHHCCCCe-EEEEecH----HHHHhhcCCCCEEEECCccHHHHHHHHHHhcccCCCE
Confidence 3445554 45555577889999999999952 2433332 234444678999999998866555555443 58999
Q ss_pred EecCC
Q 002273 789 VTMAG 793 (944)
Q Consensus 789 vt~~g 793 (944)
+...+
T Consensus 80 ~~I~~ 84 (109)
T 2l2q_A 80 EIINT 84 (109)
T ss_dssp EECCH
T ss_pred EEECh
Confidence 87544
No 335
>3nbm_A PTS system, lactose-specific IIBC components; PTS_IIB_LACTOSE, phosphoenolpyruvate:carbohydrate system, P- phosphorylation; HET: MSE; 1.30A {Streptococcus pneumoniae}
Probab=55.89 E-value=5.7 Score=34.00 Aligned_cols=82 Identities=10% Similarity=0.009 Sum_probs=54.0
Q ss_pred CceEEEec-CCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCCCCcccHHHhhhc--CCc
Q 002273 711 NSRLVVKC-KPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYM--GVP 787 (944)
Q Consensus 711 ~~~l~~~~-~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~--gvP 787 (944)
.-+++|+| .|+.+.-+..++++.++++|++ +..... + ..++-......||+|=.+...--..-++...- |+|
T Consensus 6 ~mkIlL~C~aGmSTsllv~km~~~a~~~gi~---v~i~a~-~-~~~~~~~~~~~DvvLLgPQV~y~~~~ik~~~~~~~ip 80 (108)
T 3nbm_A 6 ELKVLVLCAGSGTSAQLANAINEGANLTEVR---VIANSG-A-YGAHYDIMGVYDLIILAPQVRSYYREMKVDAERLGIQ 80 (108)
T ss_dssp CEEEEEEESSSSHHHHHHHHHHHHHHHHTCS---EEEEEE-E-TTSCTTTGGGCSEEEECGGGGGGHHHHHHHHTTTTCE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCc---eEEEEc-c-hHHHHhhccCCCEEEEChHHHHHHHHHHHHhhhcCCc
Confidence 34555554 4555556789999999999995 333211 1 12233344668999988777666666777654 899
Q ss_pred EEecCCCccc
Q 002273 788 CVTMAGSVHA 797 (944)
Q Consensus 788 vvt~~g~~~~ 797 (944)
|+..+...+.
T Consensus 81 V~vI~~~~Yg 90 (108)
T 3nbm_A 81 IVATRGMEYI 90 (108)
T ss_dssp EEECCHHHHH
T ss_pred EEEeCHHHhh
Confidence 9997766554
No 336
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=53.17 E-value=1.3e+02 Score=36.62 Aligned_cols=110 Identities=14% Similarity=-0.008 Sum_probs=65.1
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhHHhHHHHHHHHHHHH
Q 002273 88 KGICLQMQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSAD-PSYKPAAECLAIVLTDLGTS 166 (944)
Q Consensus 88 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~lg~~ 166 (944)
+...+...|.++-|. +.+..-|.++..-+.+|.++...|++++|..+|+++-.-- ........ .
T Consensus 816 l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~-----~------ 880 (950)
T 4gq2_M 816 LVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAV-----L------ 880 (950)
T ss_dssp HHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGG-----G------
T ss_pred HHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccc-----h------
Confidence 555667777777543 3556777888888899999999999999999998875321 11100000 0
Q ss_pred HHHcCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002273 167 LKLAGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE 220 (944)
Q Consensus 167 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 220 (944)
......+ ...+........|.....++...+-++-+++..+.|++.
T Consensus 881 -------~~~~~ll-~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 881 -------REFQEIA-EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp -------HHHHHHH-HHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred -------hhhhhcc-CcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 0000000 000011111235566677777778888888888877764
No 337
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=52.61 E-value=13 Score=29.21 Aligned_cols=56 Identities=16% Similarity=0.184 Sum_probs=37.8
Q ss_pred cCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCC---cEEEccCccCcHHHHHhcc-----cccEEec
Q 002273 709 VPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESL---RVDLLPLILLNHDHMQAYS-----LMDISLD 768 (944)
Q Consensus 709 ~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~---rv~~~~~~~~~~~~~~~~~-----~~Di~Ld 768 (944)
.++-++.+.... .+.+-+.+.+.+.||+++ |+.|-|....+...++-|. ++|++||
T Consensus 19 ~~dl~f~I~~~t----~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL~ 82 (82)
T 3goe_A 19 SEDLRLSIPVDF----TVKDLIKRYCTEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVLD 82 (82)
T ss_dssp SCCEEEEEETTS----BHHHHHHHHHHHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC-
T ss_pred CCCeEEEecCCC----CHHHHHHHHHHHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeeeC
Confidence 355666665433 577788888899999998 5667777666666666663 4566664
No 338
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=49.38 E-value=2e+02 Score=33.14 Aligned_cols=31 Identities=16% Similarity=0.056 Sum_probs=22.0
Q ss_pred HHHHHHHHH--HHcCCHHHHHHHHHHHHhhCCCC
Q 002273 427 AYNNLGVLY--RDAGSISLAIDAYEQCLKIDPDS 458 (944)
Q Consensus 427 a~~~la~~~--~~~g~~~eA~~~~~~al~l~P~~ 458 (944)
.+..+..++ ...|++++|++.+++ +.+-|-+
T Consensus 538 lLl~l~~f~~~~~~g~~~~AL~~i~~-L~llPl~ 570 (661)
T 2qx5_A 538 LLLNISSIRELYFNKQWQETLSQMEL-LDLLPFS 570 (661)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH-TSCSCC-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHh-CCCCCCC
Confidence 344455554 788999999999888 6677765
No 339
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=48.16 E-value=1.5e+02 Score=26.39 Aligned_cols=97 Identities=10% Similarity=-0.048 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHH---------------------------------HHHHHH---
Q 002273 50 DALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIG---------------------------------KGICLQ--- 93 (944)
Q Consensus 50 ~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~---------------------------------la~~~~--- 93 (944)
.-+.-|..+...|..++..++..+.....+....-|+. ...|+.
T Consensus 9 kkLmeAK~~ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n 88 (172)
T 1wy6_A 9 RKLMDAKKFLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINN 88 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhc
Confidence 34566788888899999999999888776543221110 122222
Q ss_pred --------------HhCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 002273 94 --------------MQNMGRLAFDSFSEAVKLDPQNACAHTHCGILYKDEGRLVEAAESYHKALSAD 146 (944)
Q Consensus 94 --------------~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 146 (944)
.+|+-++-.+.+...+..++-++..+..+|.+|.+.|+..+|.+.+.+|-+..
T Consensus 89 ~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 89 TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 33444444444444444455568888999999999999999998888887653
No 340
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=47.58 E-value=1.3e+02 Score=25.73 Aligned_cols=105 Identities=11% Similarity=0.053 Sum_probs=61.0
Q ss_pred CCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhc--ccccEEecCCCCCCcccHHHhhhc---
Q 002273 710 PNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY--SLMDISLDTFPYAGTTTTCESLYM--- 784 (944)
Q Consensus 710 p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~--~~~Di~Ld~~~~~~~~t~~eal~~--- 784 (944)
++.+++++.. +...+..+...+...|. +|..... ..+.+..+ ...|++| .|-..|...++.+..
T Consensus 17 ~~~~ilivdd---~~~~~~~l~~~L~~~g~---~v~~~~~---~~~al~~l~~~~~dlvi--~~~~~g~~~~~~l~~~~~ 85 (137)
T 2pln_A 17 GSMRVLLIEK---NSVLGGEIEKGLNVKGF---MADVTES---LEDGEYLMDIRNYDLVM--VSDKNALSFVSRIKEKHS 85 (137)
T ss_dssp TCSEEEEECS---CHHHHHHHHHHHHHTTC---EEEEESC---HHHHHHHHHHSCCSEEE--ECSTTHHHHHHHHHHHST
T ss_pred CCCeEEEEeC---CHHHHHHHHHHHHHcCc---EEEEeCC---HHHHHHHHHcCCCCEEE--EcCccHHHHHHHHHhcCC
Confidence 3445566543 34677888888888776 3443322 34444443 3479999 665556666666653
Q ss_pred CCcEEecCCCcccccchhHHHhhcCCcccccC---CHHHHHHHHHH
Q 002273 785 GVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK---NEDEYVQLALQ 827 (944)
Q Consensus 785 gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~---~~~~y~~~a~~ 827 (944)
.+|||.+.+..-.... .-....|..+++.+ +.++......+
T Consensus 86 ~~~ii~ls~~~~~~~~--~~~~~~g~~~~l~kP~~~~~~l~~~i~~ 129 (137)
T 2pln_A 86 SIVVLVSSDNPTSEEE--VHAFEQGADDYIAKPYRSIKALVARIEA 129 (137)
T ss_dssp TSEEEEEESSCCHHHH--HHHHHTTCSEEEESSCSCHHHHHHHHHH
T ss_pred CccEEEEeCCCCHHHH--HHHHHcCCceeeeCCCCCHHHHHHHHHH
Confidence 8999988765432211 12234588887765 44555444433
No 341
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=46.94 E-value=95 Score=29.52 Aligned_cols=110 Identities=12% Similarity=0.207 Sum_probs=63.5
Q ss_pred CceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcc---------------cccEE-ecCC-CCC
Q 002273 711 NSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYS---------------LMDIS-LDTF-PYA 773 (944)
Q Consensus 711 ~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~---------------~~Di~-Ld~~-~~~ 773 (944)
+.+++++.. ++..+..+...++..|.. +|..... ..+-+..+. ..||+ +|-. |-.
T Consensus 61 ~~~ILiVdD---d~~~~~~l~~~L~~~g~~--~v~~a~~---~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~~ 132 (206)
T 3mm4_A 61 GKRVLVVDD---NFISRKVATGKLKKMGVS--EVEQCDS---GKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEM 132 (206)
T ss_dssp TCEEEEECS---CHHHHHHHHHHHHHTTCS--EEEEESS---HHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSSS
T ss_pred CCEEEEEeC---CHHHHHHHHHHHHHcCCC--eeeeeCC---HHHHHHHHHhhcccccccccccCCCCCEEEEcCCCCCC
Confidence 345555543 346778888888888762 4554332 344554442 45766 5543 545
Q ss_pred CcccHHHhhh-------cCCcEEecCCCcccccchhHHHhhcCCcccccCCHHHHHHHHHHHh
Q 002273 774 GTTTTCESLY-------MGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLA 829 (944)
Q Consensus 774 ~~~t~~eal~-------~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~l~ 829 (944)
.|...+..+. ..+|||.+.|....... ..-....|..+++.+..++..+...++.
T Consensus 133 ~G~el~~~lr~~~~~~~~~~piI~ls~~~~~~~~-~~~~~~~Ga~~~l~KP~~~L~~~i~~~l 194 (206)
T 3mm4_A 133 DGYEATREIRKVEKSYGVRTPIIAVSGHDPGSEE-ARETIQAGMDAFLDKSLNQLANVIREIE 194 (206)
T ss_dssp CHHHHHHHHHHHHHTTTCCCCEEEEESSCCCHHH-HHHHHHHTCSEEEETTCTTHHHHHHHHC
T ss_pred CHHHHHHHHHhhhhhcCCCCcEEEEECCCCcHHH-HHHHHhCCCCEEEcCcHHHHHHHHHHHH
Confidence 5666666664 57999998876411111 1113346888999887664444444433
No 342
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=45.64 E-value=99 Score=28.32 Aligned_cols=64 Identities=8% Similarity=-0.074 Sum_probs=46.4
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC---HHH---HHH---HHHHHHHhCCHHHHHHHHHHHHh
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSGN---VEA---HIG---KGICLQMQNMGRLAFDSFSEAVK 110 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~---~~~---~~~---la~~~~~~g~~~~A~~~~~~al~ 110 (944)
.....+..+..++..|+|=+|-+.++.+....+.. ... ++. .|....+.|+...|...+.+++.
T Consensus 31 ~~~~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 31 TLRRAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45567888999999999999999999998876544 122 222 22234567888888888888776
No 343
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=45.42 E-value=2.3e+02 Score=27.73 Aligned_cols=170 Identities=14% Similarity=0.060 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCC--CCHHHHHHHHH
Q 002273 49 KDALSYANILRSRNKFVDALALYEIVLEKDSG-NVEAHIGKGICLQMQ-NMGRLAFDSFSEAVKLDP--QNACAHTHCGI 124 (944)
Q Consensus 49 ~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p--~~~~~~~~la~ 124 (944)
+.++.+|....+.++|++...+.+++.+.+++ +.+-...+..+|-.. |....+...+...-+... .+ .....+..
T Consensus 6 e~~v~~AklaeqaeRyddm~~~mk~v~~~~~eLt~EERnLLsvayKnvig~rR~swRiissieqk~~~k~~-~~~~~~i~ 84 (234)
T 2br9_A 6 EDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEENKGG-EDKLKMIR 84 (234)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-HHHHHHHH
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhccCc-hHHHHHHH
Q ss_pred HHHHc------CCHHHHHHHHHHHHHcCCCChhH----HhHHHHHHHHHHHH---HHHcCChHHHHHHHHHHHhh-----
Q 002273 125 LYKDE------GRLVEAAESYHKALSADPSYKPA----AECLAIVLTDLGTS---LKLAGNTQDGIQKYYEALKI----- 186 (944)
Q Consensus 125 ~~~~~------g~~~~A~~~~~~al~~~p~~~~~----~~~la~~~~~lg~~---~~~~g~~~~A~~~~~~al~~----- 186 (944)
-|... .--.+.+..+++.+--...+.+. +...+..+..++.. -.+..-.+.|...|++|+++
T Consensus 85 ~yr~kie~EL~~iC~~il~lld~~Lip~a~~~eskVFy~KmKGDyyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA~~~L 164 (234)
T 2br9_A 85 EYRQMVETELKLICCDILDVLDKHLIPAANTGESKVFYYKMKGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTEL 164 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhccCCCchHhHHHHHHHhccHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHccC
Q ss_pred ---CCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Q 002273 187 ---DPHYAPAYYNLGVVYSE-LMQYDTALGCYEKAAL 219 (944)
Q Consensus 187 ---~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~ 219 (944)
+|-......+.+..|+. +++.++|....++++.
T Consensus 165 ~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd 201 (234)
T 2br9_A 165 PPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 201 (234)
T ss_dssp CTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
No 344
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=43.76 E-value=2.6e+02 Score=27.84 Aligned_cols=171 Identities=12% Similarity=0.071 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhC---CC-CHHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 002273 49 KDALSYANILRSRNKFVDALALYEIVLEKD---SG-NVEAHIGKGICLQMQ-NMGRLAFDSFSEAVKLDPQNACAHTHCG 123 (944)
Q Consensus 49 ~~~~~~A~~~~~~g~~~~A~~~~~~al~~~---p~-~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~p~~~~~~~~la 123 (944)
+.++.+|....+.++|++...+.+++.+.+ ++ +.+-...+..+|-.. |....+...+...-+...........--
T Consensus 29 e~~v~~AkLaeqaeRyddmv~~mk~v~~~~~~~~eLt~EERnLLSvAyKNvIg~rR~swRiissieqke~~k~~~~~~~~ 108 (260)
T 2npm_A 29 ESNVYMAKLAEQAERYDEMAKYMKDVVEARQESEELTVEERNLLSVAYKNAVGSRRSSWRIISSVEQKEHSRNAEDASKM 108 (260)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhhccCcHHHHHH
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCChhHH----hHHHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHhh---
Q 002273 124 ILYKDEGRLVEAAESYHKALSADPSYKPAA----ECLAIVLTDLGTSLKLAGNT----------QDGIQKYYEALKI--- 186 (944)
Q Consensus 124 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~----~~la~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~--- 186 (944)
.--++..=-.+=...+..++.+-.+..-.. ......+...|..|...-.+ +.|...|++|+++
T Consensus 109 i~~yr~kie~EL~~iC~dil~lld~~Lip~a~~~EskVFY~KMKGDYyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA~~ 188 (260)
T 2npm_A 109 CGKYRSKVEAELTDICNDILTMLDKHLIPTATSPDSKVFYFKMKGDYHRYISEFSTGDSKQSSAEDALKAYKDATVVAKD 188 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhhccCCCchHHHHHHHHHhccHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred ----CCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Q 002273 187 ----DPHYAPAYYNLGVVYSE-LMQYDTALGCYEKAAL 219 (944)
Q Consensus 187 ----~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~ 219 (944)
+|-......+.+..|+. +++.++|....++++.
T Consensus 189 L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 226 (260)
T 2npm_A 189 LEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFE 226 (260)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
No 345
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=42.17 E-value=4.5e+02 Score=30.21 Aligned_cols=20 Identities=10% Similarity=-0.285 Sum_probs=11.8
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q 002273 122 CGILYKDEGRLVEAAESYHK 141 (944)
Q Consensus 122 la~~~~~~g~~~~A~~~~~~ 141 (944)
...++.-.|+|+.|++++-+
T Consensus 300 Yf~vLlLtgqFE~AI~~L~~ 319 (661)
T 2qx5_A 300 YLQTLLLSGLYGLAIDYTYT 319 (661)
T ss_dssp HHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHHhhHHHHHHHHHh
Confidence 44455556667666666543
No 346
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=42.09 E-value=34 Score=37.51 Aligned_cols=32 Identities=16% Similarity=0.074 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCC
Q 002273 426 EAYNNLGVLYRDAGSISLAIDAYEQCLKI-DPD 457 (944)
Q Consensus 426 ~a~~~la~~~~~~g~~~eA~~~~~~al~l-~P~ 457 (944)
..+|.+|+++...++|.+|.+.+..|++. .|.
T Consensus 221 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~ 253 (455)
T 3t5v_B 221 EYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNL 253 (455)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred eeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCc
Confidence 34455555555555555555555555555 443
No 347
>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}
Probab=42.07 E-value=2.7e+02 Score=27.63 Aligned_cols=60 Identities=13% Similarity=0.151 Sum_probs=44.8
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH-hCCHHHHHHHHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSG-NVEAHIGKGICLQM-QNMGRLAFDSFS 106 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~-~g~~~~A~~~~~ 106 (944)
+-+.++.+|...-+.++|++.....+++.+.++. +.+-...+..+|-. .|....+...+.
T Consensus 30 ~re~lv~~AKLaeqaeRYddMv~~MK~v~~~~~eLt~EERNLLSvAYKNvIgarR~swRiis 91 (261)
T 3ubw_A 30 DREDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNLLSVAYKNVIGARRASWRIIS 91 (261)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhccCCchhHHHHHh
Confidence 5678899999999999999999999999988776 56667777777643 244444444443
No 348
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=40.61 E-value=2.5e+02 Score=26.74 Aligned_cols=79 Identities=9% Similarity=0.025 Sum_probs=57.6
Q ss_pred HHHHHHHhh---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHH
Q 002273 178 QKYYEALKI---------DPHYAPAYYNLGVVYSELMQYDTALGCYEKAALE--RPMYAEAYCNMGVIYKNRGDLESAIA 246 (944)
Q Consensus 178 ~~~~~al~~---------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~ 246 (944)
.+++++++. ||....+|...+..+ ..++..++.++|..+... ....+..|...|..+...|++.+|.+
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~ 136 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKV 136 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 456666654 233345566666544 234477888998888764 45678888999999999999999999
Q ss_pred HHHHHHHhCCC
Q 002273 247 CYERCLAVSPN 257 (944)
Q Consensus 247 ~~~~al~~~p~ 257 (944)
.|+..++....
T Consensus 137 Vy~~GI~~~A~ 147 (202)
T 3esl_A 137 LLELGAENNCR 147 (202)
T ss_dssp HHHHHHHTTCB
T ss_pred HHHHHHHcCCc
Confidence 99999987643
No 349
>4erh_A Outer membrane protein A; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.52A {Salmonella enterica subsp}
Probab=40.29 E-value=27 Score=31.57 Aligned_cols=75 Identities=19% Similarity=0.228 Sum_probs=44.6
Q ss_pred CCCCCCCCeEEEe---cC-CCCcCCHHH---HHHHHHHHhHc--CCceEEEecCCC--CC--------HHHHHHHHHHHH
Q 002273 675 TPALTNGFITFGS---FN-NLAKITPKV---LQVWARILCAV--PNSRLVVKCKPF--CC--------DSVRHRFLSTLE 735 (944)
Q Consensus 675 ~~~~~~~~~~f~~---~~-~~~K~~~~~---~~~~~~il~~~--p~~~l~~~~~~~--~~--------~~~~~~~~~~~~ 735 (944)
.|....+.+++.. |. ....+++.. ++-++.+|+.. |+..+.|.|..- +. ..-...+...|.
T Consensus 10 ~p~~~~~~~~l~~~v~F~~~s~~l~~~~~~~L~~~a~~l~~~~~~~~~i~I~GhtD~~G~~~~N~~LS~~RA~aV~~~L~ 89 (148)
T 4erh_A 10 APEVQTKHFTLKSDVLFNFNKSTLKPEGQQALDQLYSQLSNLDPKDGSVVVLGFTDRIGSDAYNQGLSEKRAQSVVDYLI 89 (148)
T ss_dssp --CCCEEEEEEEHHHHBCTTCCSBCHHHHHHHHHHHHHHTCCCTTTCEEEEEEECCTTCTTCSSSSHHHHHHHHHHHHHH
T ss_pred CCCCCcceEEecceeEecCCccccCHHHHHHHHHHHHHHHhcCCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3444444554432 33 446777755 45555667776 788888876321 11 112256777888
Q ss_pred HcCCCCCcEEEccC
Q 002273 736 QLGLESLRVDLLPL 749 (944)
Q Consensus 736 ~~gi~~~rv~~~~~ 749 (944)
..||+++||...|.
T Consensus 90 ~~Gv~~~ri~~~g~ 103 (148)
T 4erh_A 90 SKGIPSDKISARGM 103 (148)
T ss_dssp TTTCCGGGEEEEEE
T ss_pred HcCCCHHHEEEEEE
Confidence 89999999987654
No 350
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=40.26 E-value=2e+02 Score=25.60 Aligned_cols=82 Identities=7% Similarity=-0.087 Sum_probs=58.1
Q ss_pred cCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 002273 170 AGNTQDGIQKYYEALKIDPHYAPAYYNLGVVYSELMQYDTALGCYEKAALERPMYAEAYCNMGVIYKNRGDLESAIACYE 249 (944)
Q Consensus 170 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 249 (944)
.|+....+.+|-+. +.. .+..-.--..+..+|+-++-.+.+...+...+-+++.+..+|.+|.+.|+..+|.+.+.
T Consensus 74 C~NlKrVi~C~~~~---n~~-se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~ 149 (172)
T 1wy6_A 74 CQNLKSVVECGVIN---NTL-NEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLI 149 (172)
T ss_dssp CSCTHHHHHHHHHT---TCC-CHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhcHHHHHHHHHHh---cch-HHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHH
Confidence 46666666666543 222 22222222456678888888888888767777779999999999999999999999999
Q ss_pred HHHHhC
Q 002273 250 RCLAVS 255 (944)
Q Consensus 250 ~al~~~ 255 (944)
++-+..
T Consensus 150 ~AC~kG 155 (172)
T 1wy6_A 150 EACKKG 155 (172)
T ss_dssp HHHHTT
T ss_pred HHHHhh
Confidence 987653
No 351
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=39.63 E-value=1.5e+02 Score=27.02 Aligned_cols=67 Identities=7% Similarity=-0.011 Sum_probs=46.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-hhHHhHHHHHH-HHHHHHHHHcCChHHHHHHHHHHHhh
Q 002273 120 THCGILYKDEGRLVEAAESYHKALSADPSY-KPAAECLAIVL-TDLGTSLKLAGNTQDGIQKYYEALKI 186 (944)
Q Consensus 120 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~la~~~-~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (944)
+..+..+++.|+|-+|-+.++.+-...+.. .+.....+.+. ...|....+.|+...|...+.+++..
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 455677788899999999998888776554 12233344455 55566666778888888888877664
No 352
>1e2b_A Enzyme IIB-cellobiose; phosphotransferase system, transferas transport, phosphorylation; NMR {Escherichia coli} SCOP: c.44.2.1 PDB: 1iib_A 1h9c_A* 2wwv_D 2wy2_D
Probab=37.83 E-value=28 Score=29.52 Aligned_cols=78 Identities=10% Similarity=0.062 Sum_probs=47.7
Q ss_pred EEEe-cCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecC
Q 002273 714 LVVK-CKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMA 792 (944)
Q Consensus 714 l~~~-~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~ 792 (944)
++++ +.|..+.-+..++++.++++|++. .|.-.+. ..-.++ ...+|++|-+....-...-++...-++||....
T Consensus 6 Ill~Cg~G~sTS~l~~k~~~~~~~~gi~~-~i~a~~~-~~~~~~---~~~~Dvil~~pqv~~~~~~~~~~~~~~~v~vI~ 80 (106)
T 1e2b_A 6 IYLFSSAGMSTSLLVSKMRAQAEKYEVPV-IIEAFPE-TLAGEK---GQNADVVLLGPQIAYMLPEIQRLLPNKPVEVID 80 (106)
T ss_dssp EEEECSSSTTTHHHHHHHHHHHHHSCCSE-EEEEECS-SSTTHH---HHHCSEEEECTTSGGGHHHHHHHSSSSCCCBCC
T ss_pred EEEECCCchhHHHHHHHHHHHHHHCCCCe-EEEEecH-HHHHhh---ccCCCEEEEccchhhhHHHHHHHhcCCCceEEC
Confidence 4444 556666677889999999999963 3333332 222334 355899998877766655666655444544444
Q ss_pred CCcc
Q 002273 793 GSVH 796 (944)
Q Consensus 793 g~~~ 796 (944)
+..+
T Consensus 81 ~~~y 84 (106)
T 1e2b_A 81 SLLY 84 (106)
T ss_dssp HHHH
T ss_pred HHHc
Confidence 4433
No 353
>3en0_A Cyanophycinase; serine protease, beta peptide specific, hydrolase, protease; 1.50A {Synechocystis SP}
Probab=37.01 E-value=99 Score=31.56 Aligned_cols=94 Identities=10% Similarity=0.013 Sum_probs=53.5
Q ss_pred CCCCCCCeEEEecCCCCcC-CHHHHHHHHHHHhHcCCceEEEecCCCCC-HHHHHHHHHHHHHcCCCCCcEEEccC----
Q 002273 676 PALTNGFITFGSFNNLAKI-TPKVLQVWARILCAVPNSRLVVKCKPFCC-DSVRHRFLSTLEQLGLESLRVDLLPL---- 749 (944)
Q Consensus 676 ~~~~~~~~~f~~~~~~~K~-~~~~~~~~~~il~~~p~~~l~~~~~~~~~-~~~~~~~~~~~~~~gi~~~rv~~~~~---- 749 (944)
+....|.+ +-.=....|- ++.+++-+.+... -|++++.++.....+ +...+.+.+.|+++|+. .|..+.-
T Consensus 22 ~~~~~g~l-~iiGGgedk~~~~~i~~~~v~lag-g~~~~I~~IptAs~~~~~~~~~~~~~f~~lG~~--~v~~L~i~~r~ 97 (291)
T 3en0_A 22 PLSSQPAI-LIIGGAEDKVHGREILQTFWSRSG-GNDAIIGIIPSASREPLLIGERYQTIFSDMGVK--ELKVLDIRDRA 97 (291)
T ss_dssp --CCSCCE-EEECSSCCSSSCCHHHHHHHHHTT-GGGCEEEEECTTCSSHHHHHHHHHHHHHHHCCS--EEEECCCCSGG
T ss_pred CCCCCceE-EEEECCCCccChHHHHHHHHHHcC-CCCCeEEEEeCCCCChHHHHHHHHHHHHHcCCC--eeEEEEecCcc
Confidence 33444544 2333344454 4555554444332 245788877443322 34567888999999993 3333321
Q ss_pred ccCcHHHHHhcccccEEecCCCCCCccc
Q 002273 750 ILLNHDHMQAYSLMDISLDTFPYAGTTT 777 (944)
Q Consensus 750 ~~~~~~~~~~~~~~Di~Ld~~~~~~~~t 777 (944)
....++....+..+|++. ++||.|
T Consensus 98 ~a~~~~~~~~l~~ad~I~----v~GGnt 121 (291)
T 3en0_A 98 QGDDSGYRLFVEQCTGIF----MTGGDQ 121 (291)
T ss_dssp GGGCHHHHHHHHHCSEEE----ECCSCH
T ss_pred ccCCHHHHHHHhcCCEEE----ECCCCH
Confidence 123467788888999997 777765
No 354
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=36.19 E-value=2e+02 Score=31.44 Aligned_cols=62 Identities=10% Similarity=0.069 Sum_probs=34.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCc
Q 002273 197 LGVVYSELMQYDTALGCYEKAALERP----------MYAEAYCNMGVIYKNRGDLESAIACYERCLAV-SPNF 258 (944)
Q Consensus 197 la~~~~~~g~~~~A~~~~~~al~~~p----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~p~~ 258 (944)
+-.+|++.++...+...++..-.... .....++.+|.++...++|.+|.+.+..|+.. .|..
T Consensus 182 L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 182 LNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp HHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 33555566655555555543322211 11345666777777777777777777777766 5543
No 355
>3j20_B 30S ribosomal protein S2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=36.10 E-value=47 Score=31.78 Aligned_cols=84 Identities=17% Similarity=0.199 Sum_probs=49.8
Q ss_pred HhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCCCCcccHHHhhhcC
Q 002273 706 LCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMG 785 (944)
Q Consensus 706 l~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~g 785 (944)
+..+-+..+++++..- ....-+.+.+++.|-..-.=.|+|...... .+..+..=|+.+-+-|-.-+....||-.+|
T Consensus 59 i~~~~~~~ilfV~tk~---~~~~~V~k~A~~~g~~~v~~rw~gG~lTN~-~~~~~~~Pdllvv~Dp~~d~~ai~EA~~l~ 134 (202)
T 3j20_B 59 LAKFEPQSILAVSVRL---YGQKPVKKFGEVTGARAIPGRFLPGTMTNP-AVKNFFEPDVLIVTDPRADHQAMREAVEIG 134 (202)
T ss_dssp HHHSCSSCEEEECCCT---TTHHHHHHHHHHHSCCCCCSSCCSSSSSCS-SSSSCCCCSEEEESCTTTSHHHHHHHHHHT
T ss_pred HHhhCCCeEEEEecCh---HHHHHHHHHHHHHCCceeCceecCCCcccH-hHHhccCCCeEEEeCCccchHHHHHHHHcC
Confidence 3334334444554321 233344455555565432234566544322 244556678877777788899999999999
Q ss_pred CcEEecCC
Q 002273 786 VPCVTMAG 793 (944)
Q Consensus 786 vPvvt~~g 793 (944)
+|||++..
T Consensus 135 IP~Ial~D 142 (202)
T 3j20_B 135 IPIVALVD 142 (202)
T ss_dssp CCEEEEEC
T ss_pred CCEEEEEc
Confidence 99998654
No 356
>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11
Probab=35.95 E-value=16 Score=36.95 Aligned_cols=30 Identities=23% Similarity=0.268 Sum_probs=24.6
Q ss_pred ccccEEecCCCCCCcccHHHhhhcCCcEEec
Q 002273 761 SLMDISLDTFPYAGTTTTCESLYMGVPCVTM 791 (944)
Q Consensus 761 ~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~ 791 (944)
..-|++||+| .|.|||++.|+-+|--+|..
T Consensus 211 ~~~~~vlD~f-~GsGtt~~~a~~~gr~~ig~ 240 (260)
T 1g60_A 211 NPNDLVLDCF-MGSGTTAIVAKKLGRNFIGC 240 (260)
T ss_dssp CTTCEEEESS-CTTCHHHHHHHHTTCEEEEE
T ss_pred CCCCEEEECC-CCCCHHHHHHHHcCCeEEEE
Confidence 3468999997 57799999999999877763
No 357
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=35.82 E-value=1.4e+02 Score=30.03 Aligned_cols=92 Identities=9% Similarity=-0.102 Sum_probs=50.2
Q ss_pred CCCcEEEeecCCCccCcHHHHHHhhhhhccCCcEEEEEEeccccCChhhHHHHHHHhhhCCceEeccCCCHHHHHHHhHh
Q 002273 508 ERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVRE 587 (944)
Q Consensus 508 ~~~lriGy~S~d~~~h~v~~~~~~~l~~~d~~~fev~~y~~~~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ 587 (944)
+++.+||++.++..+.-...++.++.......++++.++......|...+ .+..+.+.+
T Consensus 3 ~~~~~Igvi~~~~~~~~~~~~~~g~~~~a~~~g~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~ 61 (304)
T 3o1i_D 3 GSDEKICAIYPHLKDSYWLSVNYGMVSEAEKQGVNLRVLEAGGYPNKSRQ---------------------EQQLALCTQ 61 (304)
T ss_dssp --CCEEEEEESCSCSHHHHHHHHHHHHHHHHHTCEEEEEECSSTTCHHHH---------------------HHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCHHHH---------------------HHHHHHHHH
Confidence 46789999999885544455556665555555788888765432232211 234455556
Q ss_pred CCccEEEecCCCCCCCchhhhccCCcceeeeccc
Q 002273 588 DKIDILVELTGHTANNKLGMMACQPAPVQVTWIG 621 (944)
Q Consensus 588 d~idilvdl~g~t~~~~~~~~a~r~ApvQ~~~~G 621 (944)
.++|-+|=...........+-.++ +.|=+..++
T Consensus 62 ~~vdgiii~~~~~~~~~~~~~~~~-~~iPvV~~~ 94 (304)
T 3o1i_D 62 WGANAIILGTVDPHAYEHNLKSWV-GNTPVFATV 94 (304)
T ss_dssp HTCSEEEECCSSTTSSTTTHHHHT-TTSCEEECS
T ss_pred cCCCEEEEeCCChhHHHHHHHHHc-CCCCEEEec
Confidence 788988865444332122233334 544444443
No 358
>1ygp_A Yeast glycogen phosphorylase; phosphorylated form, glycosyltransferase; HET: PLP; 2.80A {Saccharomyces cerevisiae} SCOP: c.87.1.4
Probab=35.70 E-value=1.3e+02 Score=35.37 Aligned_cols=98 Identities=10% Similarity=0.029 Sum_probs=63.8
Q ss_pred CcCCHH----HHHHHHHHHhH-------------cCCceEEEecCCCCCHHHHHHHHHHHHHcC--------CCCC--cE
Q 002273 692 AKITPK----VLQVWARILCA-------------VPNSRLVVKCKPFCCDSVRHRFLSTLEQLG--------LESL--RV 744 (944)
Q Consensus 692 ~K~~~~----~~~~~~~il~~-------------~p~~~l~~~~~~~~~~~~~~~~~~~~~~~g--------i~~~--rv 744 (944)
+|-..- .+..+.+|+.. ...-++++.|+..........+.+.+...+ | .+ +|
T Consensus 612 YKRq~LniL~ii~ry~~Ik~~~~~~~~p~~~~~~~~P~~~IFaGKAaP~y~~aK~iIklI~~va~~iN~Dp~v-~~~LKV 690 (879)
T 1ygp_A 612 YKRQQLNVFGIIYRYLAMKNMLKNGASIEEVARKYPRKVSIFGGKSAPGYYMAKLIIKLINCVADIVNNDESI-EHLLKV 690 (879)
T ss_dssp GGTHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHSCCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHTTCGGG-TTSEEE
T ss_pred hHHHHHHHHHHHHHHHHHHhCccccCCCcccccCCCCeEEEEeccCCCCcHHHHHHHHHHHHHHHHhccChhh-CCceEE
Confidence 565444 44456677776 233566666666545555555655554432 3 34 89
Q ss_pred EEccCccCcHHHHH--hcccccEEecCC--CC-CCcccHHHhhhcCCcEEe-cCC
Q 002273 745 DLLPLILLNHDHMQ--AYSLMDISLDTF--PY-AGTTTTCESLYMGVPCVT-MAG 793 (944)
Q Consensus 745 ~~~~~~~~~~~~~~--~~~~~Di~Ld~~--~~-~~~~t~~eal~~gvPvvt-~~g 793 (944)
+|++- +.--++ .+..|||.+.++ |. ..||+.+=++.-|++.+. +.|
T Consensus 691 VFlen---Y~VslAe~iipaaDvseqistag~EASGTsnMKfalNGaLtlgtlDG 742 (879)
T 1ygp_A 691 VFVAD---YNVSKAEIIIPASDLSEHISTAGTEASGTSNMKFVMNGGLIIGTVDG 742 (879)
T ss_dssp EEETT---CCHHHHHHHGGGCSEEEECCCTTCCSCCHHHHHHHTTTCEEEEESCT
T ss_pred EEeCC---CCHHHHHHhhhhhhhhhhCCCCCccccCchhhHHHHcCCeeeecccc
Confidence 99876 333333 458899998766 55 889999999999999884 444
No 359
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=34.96 E-value=2e+02 Score=24.17 Aligned_cols=104 Identities=16% Similarity=0.161 Sum_probs=59.2
Q ss_pred eEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHh---cccccEEe-cCC-CCCCcccHHHhhhc---
Q 002273 713 RLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQA---YSLMDISL-DTF-PYAGTTTTCESLYM--- 784 (944)
Q Consensus 713 ~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~---~~~~Di~L-d~~-~~~~~~t~~eal~~--- 784 (944)
+++++.. ++..+..+...+++.|.. .|..... ..+-+.. ....|++| |-. |-..|...++.+..
T Consensus 7 ~iLivdd---~~~~~~~l~~~L~~~g~~--~v~~~~~---~~~a~~~~~~~~~~dlvi~D~~~p~~~g~~~~~~lr~~~~ 78 (129)
T 3h1g_A 7 KLLVVDD---SSTMRRIIKNTLSRLGYE--DVLEAEH---GVEAWEKLDANADTKVLITDWNMPEMNGLDLVKKVRSDSR 78 (129)
T ss_dssp CEEEECS---CHHHHHHHHHHHHHTTCC--CEEEESS---HHHHHHHHHHCTTCCEEEECSCCSSSCHHHHHHHHHTSTT
T ss_pred EEEEEeC---CHHHHHHHHHHHHHcCCc--EEEEeCC---HHHHHHHHHhCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC
Confidence 4555543 346888888999998873 3443332 2333332 23578775 654 55556777777653
Q ss_pred --CCcEEecCCCcccccchhHHHhhcCCcccccC--CHHHHHHHHH
Q 002273 785 --GVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK--NEDEYVQLAL 826 (944)
Q Consensus 785 --gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~--~~~~y~~~a~ 826 (944)
.+|||.+.+..-...+ .-....|..+++.+ +.++..+...
T Consensus 79 ~~~~pii~~s~~~~~~~~--~~~~~~g~~~~l~KP~~~~~L~~~l~ 122 (129)
T 3h1g_A 79 FKEIPIIMITAEGGKAEV--ITALKAGVNNYIVKPFTPQVLKEKLE 122 (129)
T ss_dssp CTTCCEEEEESCCSHHHH--HHHHHHTCCEEEESCCCHHHHHHHHH
T ss_pred CCCCeEEEEeCCCChHHH--HHHHHcCccEEEeCCCCHHHHHHHHH
Confidence 6899987765432211 12234577777754 4455544443
No 360
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=34.71 E-value=1.6e+02 Score=24.06 Aligned_cols=63 Identities=13% Similarity=0.066 Sum_probs=41.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCChhHHhHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Q 002273 121 HCGILYKDEGRLVEAAESYHKALSADPSYKPAAECLAIVLTDLGTSLKLAGNTQDGIQKYYEALKI 186 (944)
Q Consensus 121 ~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 186 (944)
..|..+++.|+|-+|-+.++..-...|+ .......+.+....|......|+. |...+.+++..
T Consensus 6 ~~~~~lfn~g~~~eaHEvlE~~W~~~~~-~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~ 68 (94)
T 2cwy_A 6 EEVLGLWRAGRYYEVHEVLEPYWLKATG-EERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEAR 68 (94)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHH
T ss_pred HHHHHHHhCCChHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHH
Confidence 3456677778888888888888777644 333334455555556666667777 77777777653
No 361
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=33.32 E-value=63 Score=37.51 Aligned_cols=48 Identities=13% Similarity=0.065 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC
Q 002273 49 KDALSYANILRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQMQN 96 (944)
Q Consensus 49 ~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 96 (944)
+..+..|+..+..|+|.-|.++.+.++..+|+|.++...++.+|.++|
T Consensus 450 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~ 497 (658)
T 2cfu_A 450 ERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLG 497 (658)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555555555554444
No 362
>1hym_A CMTI-V, hydrolyzed cucurbita maxima trypsin inhibitor V; hydrolase (serine proteinase); NMR {Cucurbita maxima} SCOP: d.40.1.1
Probab=33.27 E-value=23 Score=24.62 Aligned_cols=27 Identities=11% Similarity=0.400 Sum_probs=23.8
Q ss_pred CceEeccCCCHHHHHHHhHhCCccEEE
Q 002273 568 GIWRDIYGIDEKKVAAMVREDKIDILV 594 (944)
Q Consensus 568 ~~~~~~~~~~~~~~a~~i~~d~idilv 594 (944)
..|-++.|++.+++++.|..|+.|+-|
T Consensus 8 ~sWPELVG~~~~~A~~~I~~e~P~v~v 34 (45)
T 1hym_A 8 SSWPHLVGVGGSVAKAIIERQNPNVKA 34 (45)
T ss_dssp SBCCCCTTSCHHHHHHHHHHHCTTCEE
T ss_pred CcChhhcCCcHHHHHHHHHHHCCCCeE
Confidence 469999999999999999999888644
No 363
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=33.15 E-value=1e+02 Score=24.02 Aligned_cols=28 Identities=4% Similarity=0.032 Sum_probs=14.4
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCC
Q 002273 53 SYANILRSRNKFVDALALYEIVLEKDSG 80 (944)
Q Consensus 53 ~~A~~~~~~g~~~~A~~~~~~al~~~p~ 80 (944)
.+|+.+...|++++|...|-+++...|+
T Consensus 22 ~~GE~L~~~g~~~~~~~hf~nAl~Vc~q 49 (73)
T 3ax2_A 22 QLGEELLAQGDYEKGVDHLTNAIAVCGQ 49 (73)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 3455555555555555555555555444
No 364
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=32.67 E-value=69 Score=24.92 Aligned_cols=30 Identities=20% Similarity=0.357 Sum_probs=17.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Q 002273 161 TDLGTSLKLAGNTQDGIQKYYEALKIDPHY 190 (944)
Q Consensus 161 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 190 (944)
..+|..+...|++++|..+|-+|+...|.-
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP 50 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQP 50 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 345555556666666666666666655543
No 365
>1tvm_A PTS system, galactitol-specific IIB component; phosphotransferase system (PTS), P-loop; NMR {Escherichia coli}
Probab=32.63 E-value=74 Score=27.13 Aligned_cols=66 Identities=8% Similarity=0.112 Sum_probs=41.3
Q ss_pred eEEEec-CCCCCHH-HHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEe
Q 002273 713 RLVVKC-KPFCCDS-VRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVT 790 (944)
Q Consensus 713 ~l~~~~-~~~~~~~-~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt 790 (944)
+++++| .|.++.. +..++++.|.+.|++ -.|.-.+. .++-.....+|+++-|.+..... -|+||+.
T Consensus 23 kIlvvC~sG~gTS~ll~~kl~~~~~~~gi~-~~V~~~~~----~~~~~~~~~~DlIist~~l~~~~-------~~ipvi~ 90 (113)
T 1tvm_A 23 KIIVACGGAVATSTMAAEEIKELCQSHNIP-VELIQCRV----NEIETYMDGVHLICTTARVDRSF-------GDIPLVH 90 (113)
T ss_dssp EEEEESCSCSSHHHHHHHHHHHHHHHTTCC-EEEEEECT----TTTTTSTTSCSEEEESSCCCCCS-------TTCCEEC
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHHcCCe-EEEEEecH----HHHhhccCCCCEEEECCcccccc-------CCCCEEE
Confidence 455554 4555444 589999999999995 23333322 12222345799999999887211 1689886
No 366
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=32.25 E-value=1.4e+02 Score=23.90 Aligned_cols=31 Identities=16% Similarity=0.283 Sum_probs=22.0
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEK 77 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~ 77 (944)
.+..++..|..+++.++|.+|..+|+++...
T Consensus 52 ~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ 82 (106)
T 2vkj_A 52 KARSLIAEGKDLFETANYGEALVFFEKALNL 82 (106)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHcc
Confidence 4556677777777777777777777777654
No 367
>2hqs_H Peptidoglycan-associated lipoprotein; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: d.79.7.1 PDB: 2w8b_C 1oap_A
Probab=32.22 E-value=1e+02 Score=26.47 Aligned_cols=74 Identities=9% Similarity=0.049 Sum_probs=45.5
Q ss_pred HHHHHHHHHHhHcCCceEEEecCCC--CCHH--------HHHHHHHHHHHcCCCCCcEEEccCccCc-------HHHHHh
Q 002273 697 KVLQVWARILCAVPNSRLVVKCKPF--CCDS--------VRHRFLSTLEQLGLESLRVDLLPLILLN-------HDHMQA 759 (944)
Q Consensus 697 ~~~~~~~~il~~~p~~~l~~~~~~~--~~~~--------~~~~~~~~~~~~gi~~~rv~~~~~~~~~-------~~~~~~ 759 (944)
..++.++++|+..|+..+.|.|..- +... -...+...+.+.||+++||...|.-... .+-.+.
T Consensus 23 ~~L~~ia~~l~~~p~~~i~I~GhtD~~G~~~~N~~LS~~RA~aV~~~L~~~Gi~~~ri~~~g~G~~~P~~~n~t~~~r~~ 102 (118)
T 2hqs_H 23 QMLDAHANFLRSNPSYKVTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHDEAAYSK 102 (118)
T ss_dssp HHHHHHHHHHHHCTTCCEEEEECCCSSSCHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEEECTTSSCSSCCSSHHHHHH
T ss_pred HHHHHHHHHHHhCCCcEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEecCCCcCCCCcCHHHHHh
Confidence 4677788889999998888876322 2221 1245667777899999999876542211 222344
Q ss_pred cccccEEecCC
Q 002273 760 YSLMDISLDTF 770 (944)
Q Consensus 760 ~~~~Di~Ld~~ 770 (944)
-+.++|.+-|.
T Consensus 103 NRRVei~i~~~ 113 (118)
T 2hqs_H 103 NRRAVLVYLEH 113 (118)
T ss_dssp HSEEEEECC--
T ss_pred CCcEEEEEecC
Confidence 45566666543
No 368
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=31.69 E-value=4.4e+02 Score=27.05 Aligned_cols=31 Identities=10% Similarity=-0.087 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC
Q 002273 48 GKDALSYANILRSRNKFVDALALYEIVLEKD 78 (944)
Q Consensus 48 ~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~ 78 (944)
....+..|..++..|++++|+..|+.++..-
T Consensus 114 L~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i 144 (325)
T 3mv2_A 114 VNEKMNEGYKNFKLNKPDIAIECFREAIYRI 144 (325)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 4557889999999999999999999998753
No 369
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=31.42 E-value=3.1e+02 Score=25.21 Aligned_cols=135 Identities=14% Similarity=0.056 Sum_probs=74.4
Q ss_pred eEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhc------ccccEEecCCCCCCcccHHHhhhcCC
Q 002273 713 RLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY------SLMDISLDTFPYAGTTTTCESLYMGV 786 (944)
Q Consensus 713 ~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~------~~~Di~Ld~~~~~~~~t~~eal~~gv 786 (944)
+.-++.++..+.+.-+.....++++||+.+ +...+.-.. .+.+..| +.++|++-----.++...+=|-..-+
T Consensus 14 ~V~IimGS~SD~~v~~~a~~~l~~~gi~~e-v~V~saHR~-p~~l~~~~~~a~~~g~~ViIa~AG~aahLpgvvA~~t~~ 91 (173)
T 4grd_A 14 LVGVLMGSSSDWDVMKHAVAILQEFGVPYE-AKVVSAHRM-PDEMFDYAEKARERGLRAIIAGAGGAAHLPGMLAAKTTV 91 (173)
T ss_dssp SEEEEESSGGGHHHHHHHHHHHHHTTCCEE-EEECCTTTS-HHHHHHHHHHHTTTTCSEEEEEEESSCCHHHHHHHHCCS
T ss_pred eEEEEeCcHhHHHHHHHHHHHHHHcCCCEE-EEEEccccC-HHHHHHHHHHHHhcCCeEEEEeccccccchhhheecCCC
Confidence 344443444556677778888999999644 444433222 2333333 44678876555566776777777789
Q ss_pred cEEecCCCcccccchhHHHhhcCCccc-----ccCCHH-----HHHHHHHHHhcCHHH---HHHHHHHHHHHhhcC
Q 002273 787 PCVTMAGSVHAHNVGVSLLTKVGLKHL-----IAKNED-----EYVQLALQLASDVTA---LANLRMSLRDLMSKS 849 (944)
Q Consensus 787 Pvvt~~g~~~~~r~~~~~l~~~gl~~~-----v~~~~~-----~y~~~a~~l~~d~~~---~~~~r~~~~~~~~~~ 849 (944)
|||..|=..-...---|+|.-+.+|.- ++-+.+ .+.+.-+-=..|++. +.++|++.++.+...
T Consensus 92 PVIgVPv~~~~l~G~dsLlSivqMP~Gvpvatv~i~~~~a~NAallA~~ILa~~d~~l~~kl~~~r~~~~~~v~~~ 167 (173)
T 4grd_A 92 PVLGVPVASKYLKGVDSLHSIVQMPKGVPVATFAIGEAGAANAALFAVSILSGNSVDYANRLAAFRVRQNEAAHAM 167 (173)
T ss_dssp CEEEEEECCTTTTTHHHHHHHHCCCTTSCCEECCSSHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CEEEEEcCCCCCCchhHHHHHHhCCCCCCceEEecCCcchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 999887432222223467777666653 333432 233222222456654 444466666655443
No 370
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=31.01 E-value=2.6e+02 Score=24.25 Aligned_cols=95 Identities=11% Similarity=0.079 Sum_probs=54.7
Q ss_pred eEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhc-----------ccccEE-ecCC-CCCCcccHH
Q 002273 713 RLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY-----------SLMDIS-LDTF-PYAGTTTTC 779 (944)
Q Consensus 713 ~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~-----------~~~Di~-Ld~~-~~~~~~t~~ 779 (944)
+++++.. ++..+..+...++..|.. .+|..... ..+.+..+ ...|++ +|.. |-..|...+
T Consensus 6 ~ILivdd---d~~~~~~l~~~L~~~g~~-~~v~~~~~---~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~ 78 (152)
T 3heb_A 6 TIVMIED---DLGHARLIEKNIRRAGVN-NEIIAFTD---GTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDIL 78 (152)
T ss_dssp EEEEECC---CHHHHHHHHHHHHHTTCC-CCEEEESS---HHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHH
T ss_pred eEEEEeC---CHHHHHHHHHHHHhCCCc-ceEEEeCC---HHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHH
Confidence 4555543 357888899999999884 35554433 34555544 346766 5644 545566677
Q ss_pred Hhhhc-----CCcEEecCCCcccccchhHHHhhcCCcccccC
Q 002273 780 ESLYM-----GVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK 816 (944)
Q Consensus 780 eal~~-----gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~ 816 (944)
+.+.. ++|||.+.+..-...+ .-....|..+++.+
T Consensus 79 ~~lr~~~~~~~~pii~~t~~~~~~~~--~~~~~~g~~~~l~K 118 (152)
T 3heb_A 79 KLVKENPHTRRSPVVILTTTDDQREI--QRCYDLGANVYITK 118 (152)
T ss_dssp HHHHHSTTTTTSCEEEEESCCCHHHH--HHHHHTTCSEEEEC
T ss_pred HHHHhcccccCCCEEEEecCCCHHHH--HHHHHCCCcEEEeC
Confidence 76654 7898887654322211 11223466665544
No 371
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=30.98 E-value=1.1e+02 Score=25.11 Aligned_cols=30 Identities=20% Similarity=0.360 Sum_probs=18.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Q 002273 160 LTDLGTSLKLAGNTQDGIQKYYEALKIDPH 189 (944)
Q Consensus 160 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 189 (944)
-..+|..+...|+++.|+.+|-+|+...|.
T Consensus 23 eV~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 23 EIQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 345666666677777777766666665443
No 372
>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...
Probab=30.57 E-value=3.9e+02 Score=26.07 Aligned_cols=61 Identities=16% Similarity=0.177 Sum_probs=45.8
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH-hCCHHHHHHHHHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLEKDSG-NVEAHIGKGICLQM-QNMGRLAFDSFSE 107 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~-~g~~~~A~~~~~~ 107 (944)
+-+.++.+|...-+.++|++.....+++.+.++. +.+-...+..+|-. .|....+...+..
T Consensus 7 ~re~~v~~AklaeqaeRyddM~~~mk~v~~~~~eLs~EERnLLSvaYKNvig~rR~swRiiss 69 (236)
T 3iqu_A 7 ERASLIQKAKLAEQAERYEDMAAFMKGAVEKGEELSCEERNLLSVAYKNVVGGQRAAWRVLSS 69 (236)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHHHH
Confidence 5678899999999999999999999999998776 56677777777643 3444445554443
No 373
>3td3_A Outer membrane protein OMP38; OMPA-like fold, cell-WALL attachment, peptidoglycan-binding, protein,peptide binding protein; 1.59A {Acinetobacter baumannii} PDB: 3td4_A* 3td5_A*
Probab=30.05 E-value=92 Score=26.89 Aligned_cols=53 Identities=13% Similarity=0.079 Sum_probs=37.0
Q ss_pred HHHHHHHHHHhHcCCceEEEecCCC--CCHH--------HHHHHHHHHHH-cCCCCCcEEEccC
Q 002273 697 KVLQVWARILCAVPNSRLVVKCKPF--CCDS--------VRHRFLSTLEQ-LGLESLRVDLLPL 749 (944)
Q Consensus 697 ~~~~~~~~il~~~p~~~l~~~~~~~--~~~~--------~~~~~~~~~~~-~gi~~~rv~~~~~ 749 (944)
..++-++.+|+..|+..+.|.|..- +... -...+...+.+ .||+++||...|.
T Consensus 31 ~~L~~~a~~l~~~~~~~i~I~GhtD~~g~~~~N~~LS~~RA~aV~~~L~~~~Gi~~~ri~~~g~ 94 (123)
T 3td3_A 31 PEIAKVAEKLSEYPNATARIEGHTDNTGPRKLNERLSLARANSVKSALVNEYNVDASRLSTQGF 94 (123)
T ss_dssp HHHHHHHHHHHHSTTCEEEEEECCCSCSCHHHHHHHHHHHHHHHHHHHHHHSCCCGGGEEEEEC
T ss_pred HHHHHHHHHHHhCCCceEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHhhCCCHHHEEEEEE
Confidence 4577778889999999988876422 2222 12456667776 7999999987654
No 374
>2aiz_P Outer membrane protein P6; alpha-beta sandwich; HET: UDP AMU DGL 6CL DAL; NMR {Haemophilus influenzae} SCOP: d.79.7.1
Probab=29.66 E-value=81 Score=27.86 Aligned_cols=59 Identities=17% Similarity=0.193 Sum_probs=40.6
Q ss_pred CCcCCHH---HHHHHHHHHhHcCCceEEEecCCC--CCHH--------HHHHHHHHHHHcCCCCCcEEEccC
Q 002273 691 LAKITPK---VLQVWARILCAVPNSRLVVKCKPF--CCDS--------VRHRFLSTLEQLGLESLRVDLLPL 749 (944)
Q Consensus 691 ~~K~~~~---~~~~~~~il~~~p~~~l~~~~~~~--~~~~--------~~~~~~~~~~~~gi~~~rv~~~~~ 749 (944)
..+++|. .++-++.+|+..|+..+.|.|..- +... -...+...|.+.||+++||...+.
T Consensus 38 sa~L~~~~~~~L~~ia~~L~~~p~~~i~I~GhtD~~G~~~~N~~LS~~RA~aV~~~L~~~Gi~~~ri~~~g~ 109 (134)
T 2aiz_P 38 KYDITGEYVQILDAHAAYLNATPAAKVLVEGNTDERGTPEYNIALGQRRADAVKGYLAGKGVDAGKLGTVSY 109 (134)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHSTTCCEEEEEECCSSSCHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEC
T ss_pred CceeCHHHHHHHHHHHHHHHHCCCceEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEE
Confidence 3556665 577788888999998888876321 1211 124566777889999999987654
No 375
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=28.96 E-value=4.4e+02 Score=33.04 Aligned_cols=37 Identities=11% Similarity=0.048 Sum_probs=28.3
Q ss_pred HHhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 002273 58 LRSRNKFVDALALYEIVLEKDSGNVEAHIGKGICLQM 94 (944)
Q Consensus 58 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 94 (944)
.+.+-+.+++.++|+++++..|++..++..+...+..
T Consensus 1117 ~~~k~~~~~~~~~~~~l~~~~P~~l~~~~~~l~~l~~ 1153 (1354)
T 3lxu_X 1117 QIVKCELEMAEKIYNDVVAAHPKHLQANLLLIQNIES 1153 (1354)
T ss_dssp HHTTSCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHhhcChHHHHHHHHHHHHHCCccHHHHHHHHHhhhh
Confidence 4445567888899999999999988888777666553
No 376
>2kgw_A Outer membrane protein A; OMPA-L membrane, transmembrane; NMR {Mycobacterium tuberculosis} PDB: 2lca_A 2lbt_A
Probab=28.66 E-value=76 Score=27.76 Aligned_cols=67 Identities=22% Similarity=0.282 Sum_probs=43.8
Q ss_pred CCeEEEecCCCCcCCHH---HHHHHHHHHhHcCCceEEEecCCC--CCHH--------HHHHHHHHHHHcCCCCCcEEEc
Q 002273 681 GFITFGSFNNLAKITPK---VLQVWARILCAVPNSRLVVKCKPF--CCDS--------VRHRFLSTLEQLGLESLRVDLL 747 (944)
Q Consensus 681 ~~~~f~~~~~~~K~~~~---~~~~~~~il~~~p~~~l~~~~~~~--~~~~--------~~~~~~~~~~~~gi~~~rv~~~ 747 (944)
..|.|.. ....++++ .++-++.+|+..|+..+.|.|..- +... -...+...+.+.||+++||...
T Consensus 24 ~~i~F~~--~s~~l~~~~~~~L~~ia~~l~~~~~~~i~I~GhtD~~G~~~~N~~LS~~RA~aV~~~L~~~Gi~~~ri~~~ 101 (129)
T 2kgw_A 24 GPIAFGN--DGASLIPADYEILNRVADKLKACPDARVTINGYTDNTGSEGINIPLSAQRAKIVADYLVARGVAGDHIATV 101 (129)
T ss_dssp SCBCCCT--TSSCCCHHHHHHHHHHHHHHHTCTTSCEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEE
T ss_pred CceEeCC--CCcccCHHHHHHHHHHHHHHHhCCCceEEEEEEeCCCCChHHHHHHHHHHHHHHHHHHHHcCCCHHHEEEE
Confidence 3454543 34566665 566778889999998888876432 1211 1244666777889999999876
Q ss_pred cC
Q 002273 748 PL 749 (944)
Q Consensus 748 ~~ 749 (944)
|.
T Consensus 102 g~ 103 (129)
T 2kgw_A 102 GL 103 (129)
T ss_dssp EC
T ss_pred EE
Confidence 54
No 377
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=28.16 E-value=77 Score=25.36 Aligned_cols=28 Identities=14% Similarity=0.116 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 002273 49 KDALSYANILRSRNKFVDALALYEIVLE 76 (944)
Q Consensus 49 ~~~~~~A~~~~~~g~~~~A~~~~~~al~ 76 (944)
-.++..|...-..|+|++|+.+|.++++
T Consensus 20 i~lv~~Ave~D~~g~y~eAl~lY~~aie 47 (83)
T 2w2u_A 20 RKYAINAVKADKEGNAEEAITNYKKAIE 47 (83)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3455555555566666666666555543
No 378
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=28.03 E-value=54 Score=31.51 Aligned_cols=107 Identities=15% Similarity=0.210 Sum_probs=58.9
Q ss_pred eEEEec-CCCCcCC----HHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHH
Q 002273 683 ITFGSF-NNLAKIT----PKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHM 757 (944)
Q Consensus 683 ~~f~~~-~~~~K~~----~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~ 757 (944)
.+||.- +...=|+ -+.+..-.+.+..+-+..+++++... ....-+.+.++..|-..-.=.|+|....... +
T Consensus 35 YIy~~R~~gihIIdL~kT~~~L~~A~~~i~~i~~~~iLfVgTk~---~~~~~V~~~A~~~g~~~v~~rwlgG~LTN~~-~ 110 (208)
T 1vi6_A 35 FIFKVRQDGLYVLDIRKLDERIRVAAKFLSRYEPSKILLVAARQ---YAHKPVQMFSKVVGSDYIVGRFIPGTLTNPM-L 110 (208)
T ss_dssp GEEEECTTSCEEECHHHHHHHHHHHHHHHTTSCGGGEEEEECSG---GGHHHHHHHHHHHCCEEEESSCCTTTTTCTT-S
T ss_pred eEEeeeCCCcEEEcHHHHHHHHHHHHHHHHhcCCCEEEEEeCCH---HHHHHHHHHHHHhCCeeecCEECCCcccChh-h
Confidence 567775 3332222 22222333334444344555554321 2344455555566653211235655543332 3
Q ss_pred HhcccccEEecCCCCCCcccHHHhhhcCCcEEecCC
Q 002273 758 QAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG 793 (944)
Q Consensus 758 ~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g 793 (944)
..+..=|+++-+-|-.-+....||-.+|+|||++..
T Consensus 111 ~~f~~PdlliV~Dp~~e~~ai~EA~~l~IPvIalvD 146 (208)
T 1vi6_A 111 SEYREPEVVFVNDPAIDKQAVSEATAVGIPVVALCD 146 (208)
T ss_dssp TTCCCCSEEEESCTTTTHHHHHHHHHTTCCEEEEEC
T ss_pred HhhCCCCEEEEECCCcchhHHHHHHHhCCCEEEEeC
Confidence 445667777666677888999999999999998754
No 379
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=27.68 E-value=3.1e+02 Score=23.93 Aligned_cols=107 Identities=11% Similarity=0.132 Sum_probs=64.9
Q ss_pred CceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhc--ccccEE-ecCC-CCCCcccHHHhhh---
Q 002273 711 NSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY--SLMDIS-LDTF-PYAGTTTTCESLY--- 783 (944)
Q Consensus 711 ~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~--~~~Di~-Ld~~-~~~~~~t~~eal~--- 783 (944)
+-+++++.. ++..+.-+...++..|.. .|.... +..+-+..+ ...|++ +|=- |--.|..++..+-
T Consensus 12 ~~rILiVDD---~~~~r~~l~~~L~~~G~~--~v~~a~---~g~~al~~~~~~~~DlillD~~MP~mdG~el~~~ir~~~ 83 (134)
T 3to5_A 12 NMKILIVDD---FSTMRRIVKNLLRDLGFN--NTQEAD---DGLTALPMLKKGDFDFVVTDWNMPGMQGIDLLKNIRADE 83 (134)
T ss_dssp TCCEEEECS---CHHHHHHHHHHHHHTTCC--CEEEES---SHHHHHHHHHHHCCSEEEEESCCSSSCHHHHHHHHHHST
T ss_pred CCEEEEEeC---CHHHHHHHHHHHHHcCCc--EEEEEC---CHHHHHHHHHhCCCCEEEEcCCCCCCCHHHHHHHHHhCC
Confidence 346666653 457888899999999983 343322 133334333 335766 5644 7767888888774
Q ss_pred --cCCcEEecCCCcccccchhHHHhhcCCcccccC--CHHHHHHHHHH
Q 002273 784 --MGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK--NEDEYVQLALQ 827 (944)
Q Consensus 784 --~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~--~~~~y~~~a~~ 827 (944)
..+|||.+.+..-....- -...+|..+++.+ +.++..+..-+
T Consensus 84 ~~~~ipvI~lTa~~~~~~~~--~~~~~Ga~~yl~KP~~~~~L~~~i~~ 129 (134)
T 3to5_A 84 ELKHLPVLMITAEAKREQII--EAAQAGVNGYIVKPFTAATLKEKLDK 129 (134)
T ss_dssp TTTTCCEEEEESSCCHHHHH--HHHHTTCCEEEESSCCHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCHHHHH--HHHHCCCCEEEECCCCHHHHHHHHHH
Confidence 579999887754333221 2234588887766 55555554443
No 380
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=27.31 E-value=1.5e+02 Score=28.25 Aligned_cols=34 Identities=12% Similarity=-0.088 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCh
Q 002273 117 CAHTHCGILYKDEGRLVEAAESYHKALSADPSYK 150 (944)
Q Consensus 117 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 150 (944)
...+.+|.++...++|.+|.+.+..|+...|...
T Consensus 15 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 15 TYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence 4566777777777777777777777777766543
No 381
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=27.26 E-value=87 Score=25.45 Aligned_cols=26 Identities=15% Similarity=0.029 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 002273 427 AYNNLGVLYRDAGSISLAIDAYEQCL 452 (944)
Q Consensus 427 a~~~la~~~~~~g~~~eA~~~~~~al 452 (944)
.+-..+..+...|+|++|+++.+++.
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 34445555555666666655544443
No 382
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=26.58 E-value=85 Score=25.07 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=13.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHH
Q 002273 50 DALSYANILRSRNKFVDALALYEIVL 75 (944)
Q Consensus 50 ~~~~~A~~~~~~g~~~~A~~~~~~al 75 (944)
.++..|...-+.|+|++|+.+|.+++
T Consensus 13 ~lv~~Ave~D~~g~y~eAl~lY~~ai 38 (83)
T 2v6y_A 13 KYAILAVKADKEGKVEDAITYYKKAI 38 (83)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 34444555555555555555554443
No 383
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=26.32 E-value=1.9e+02 Score=28.88 Aligned_cols=103 Identities=12% Similarity=0.102 Sum_probs=58.8
Q ss_pred CCCcEEEeecCCCccCcHHHHHHhhhhhccCCcEEEEEEeccccCChhhHHHHHHHhhhCCceEeccCCCHHHHHHHhHh
Q 002273 508 ERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVRE 587 (944)
Q Consensus 508 ~~~lriGy~S~d~~~h~v~~~~~~~l~~~d~~~fev~~y~~~~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ 587 (944)
++..+||++.+++.+.-...++.++.......++++.++.... |...+ .+..+.+.+
T Consensus 6 ~~~~~Igvv~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~--~~~~~---------------------~~~~~~l~~ 62 (291)
T 3egc_A 6 KRSNVVGLIVSDIENVFFAEVASGVESEARHKGYSVLLANTAE--DIVRE---------------------REAVGQFFE 62 (291)
T ss_dssp -CCCEEEEEESCTTSHHHHHHHHHHHHHHHHTTCEEEEEECTT--CHHHH---------------------HHHHHHHHH
T ss_pred CCCcEEEEEECCCcchHHHHHHHHHHHHHHHCCCEEEEEeCCC--CHHHH---------------------HHHHHHHHH
Confidence 4567899999987654445566666666666788888876432 22111 245666777
Q ss_pred CCccEEEecCCCCCCCchhhhccCCcceeeecccCCCCCCCCCccEEEec
Q 002273 588 DKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITD 637 (944)
Q Consensus 588 d~idilvdl~g~t~~~~~~~~a~r~ApvQ~~~~G~p~t~g~~~~Dy~i~d 637 (944)
.++|-+|-..... ....+-.++-+.+-+..+|.+... +.++++.+|
T Consensus 63 ~~vdgiIi~~~~~--~~~~~~~~~~~~iPvV~~~~~~~~--~~~~~V~~D 108 (291)
T 3egc_A 63 RRVDGLILAPSEG--EHDYLRTELPKTFPIVAVNRELRI--PGCGAVLSE 108 (291)
T ss_dssp TTCSEEEECCCSS--CCHHHHHSSCTTSCEEEESSCCCC--TTCEEEEEC
T ss_pred CCCCEEEEeCCCC--ChHHHHHhhccCCCEEEEecccCC--CCCCEEEEC
Confidence 8999888544333 222222334444444455544321 345666555
No 384
>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11
Probab=26.31 E-value=26 Score=36.64 Aligned_cols=31 Identities=16% Similarity=0.106 Sum_probs=25.2
Q ss_pred ccccEEecCCCCCCcccHHHhhhcCCcEEecC
Q 002273 761 SLMDISLDTFPYAGTTTTCESLYMGVPCVTMA 792 (944)
Q Consensus 761 ~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~ 792 (944)
..-|++|||| .|.|||+..|+-+|--.|.+.
T Consensus 251 ~~~~~VlDpF-~GsGtt~~aa~~~gr~~ig~e 281 (323)
T 1boo_A 251 EPDDLVVDIF-GGSNTTGLVAERESRKWISFE 281 (323)
T ss_dssp CTTCEEEETT-CTTCHHHHHHHHTTCEEEEEE
T ss_pred CCCCEEEECC-CCCCHHHHHHHHcCCCEEEEe
Confidence 4469999998 477999999999998777643
No 385
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=26.19 E-value=3e+02 Score=28.60 Aligned_cols=80 Identities=19% Similarity=0.067 Sum_probs=50.0
Q ss_pred HHHHHHHHHHcCC---hHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----CCCCHHHHHHH
Q 002273 326 MYNLGVAYGEMLK---FDMAIVFYELAFHFNPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI-----KPNFSQSLNNL 397 (944)
Q Consensus 326 ~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l 397 (944)
...|-.+++..|. |.-|+-.+-..-+..|.. | ...++.+|.+++.. ...+...+..+
T Consensus 238 Qq~LLWLLyD~GhL~rYPmALgnLgDLEe~~pt~--------------g-r~~~l~L~~~AI~sa~~yY~n~HvYPYtyl 302 (472)
T 3re2_A 238 QQELLWLLYDMGHIKTYPMAIANLGDLEEISPTP--------------G-RPPAEELFKEAITVAKREYSDHHIYPYTYL 302 (472)
T ss_dssp HHHHHHHHHHTTTTTTCHHHHHHHHHHHHHSCCT--------------T-SCCHHHHHHHHHHHHHHHSTTCCSHHHHHH
T ss_pred HHHHHHHHHhccchhhCchhhcchhhHHhcCCCC--------------C-CCCHHHHHHHHHHHHHHHhccCCccchhhh
Confidence 3455556666553 444444444444443331 1 22366777777654 34556678888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Q 002273 398 GVVYTVQGKMDAAAEMIEKAIAA 420 (944)
Q Consensus 398 a~~~~~~g~~~~A~~~l~~al~~ 420 (944)
|-.+++.+++.+|+..+..+-..
T Consensus 303 gGy~yR~~~~reAl~~WA~Aa~V 325 (472)
T 3re2_A 303 GGYYYRKKKYYEAIASWVDAGYV 325 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhhhhcchHHHHHHHHHHHHHH
Confidence 88999999999999998887654
No 386
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=26.17 E-value=1.2e+02 Score=24.59 Aligned_cols=30 Identities=23% Similarity=0.117 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q 002273 154 ECLAIVLTDLGTSLKLAGNTQDGIQKYYEA 183 (944)
Q Consensus 154 ~~la~~~~~lg~~~~~~g~~~~A~~~~~~a 183 (944)
.+.|..+...+..+...|+|++||++.+++
T Consensus 12 Ln~AH~~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 12 LNLAHQQSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhhhHhhhHHHHHHhcCCHHHHHHHHHHH
Confidence 344555666666666666666666665544
No 387
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=26.02 E-value=1.2e+02 Score=29.90 Aligned_cols=38 Identities=8% Similarity=-0.192 Sum_probs=26.7
Q ss_pred cEEEeecCCCccCcHHHHHHhhhhhccCCcEEEEEEec
Q 002273 511 LVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSA 548 (944)
Q Consensus 511 lriGy~S~d~~~h~v~~~~~~~l~~~d~~~fev~~y~~ 548 (944)
++||++.++..+.-...++.++.......++++..+..
T Consensus 1 ~~Ig~i~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~ 38 (276)
T 3ksm_A 1 PKLLLVLKGDSNAYWRQVYLGAQKAADEAGVTLLHRST 38 (276)
T ss_dssp CEEEEECSCSSSTHHHHHHHHHHHHHHHHTCEEEECCC
T ss_pred CeEEEEeCCCCChHHHHHHHHHHHHHHHcCCEEEEECC
Confidence 58999999886655566666666655556788877654
No 388
>3kuu_A Phosphoribosylaminoimidazole carboxylase catalyti PURE; 3-layer (ABA) sandwich, rossmann fold, csgid, lyase, structu genomics; 1.41A {Yersinia pestis} SCOP: c.23.8.1 PDB: 1d7a_A* 1qcz_A 2ate_A* 2nsl_A* 2nsh_A* 2nsj_A*
Probab=25.99 E-value=3.9e+02 Score=24.60 Aligned_cols=129 Identities=15% Similarity=0.040 Sum_probs=71.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhc------ccccEEecCCCCCCcccHHHhhhcCCcEEecC
Q 002273 719 KPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY------SLMDISLDTFPYAGTTTTCESLYMGVPCVTMA 792 (944)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~------~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~ 792 (944)
++..+.+.-+.....++.+||+- .+...+.-.. .+.+..| +.++|++--=--.++...+=|-..-+|||..|
T Consensus 20 GS~SD~~v~~~a~~~L~~~Gi~~-ev~V~SaHR~-p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t~~PVIgVP 97 (174)
T 3kuu_A 20 GSKSDWATMQFAADVLTTLNVPF-HVEVVSAHRT-PDRLFSFAEQAEANGLHVIIAGNGGAAHLPGMLAAKTLVPVLGVP 97 (174)
T ss_dssp SSGGGHHHHHHHHHHHHHTTCCE-EEEECCTTTC-HHHHHHHHHHTTTTTCSEEEEEEESSCCHHHHHHHTCSSCEEEEE
T ss_pred CcHHHHHHHHHHHHHHHHcCCCE-EEEEEcccCC-HHHHHHHHHHHHhCCCcEEEEECChhhhhHHHHHhccCCCEEEee
Confidence 34445667778888899999964 3444443332 3444444 44788876555566777777777789999876
Q ss_pred CCcccccchhHHHhhcCCcccc-----cCCH-----HHHHHHHHHHhcCHH---HHHHHHHHHHHHhhcC
Q 002273 793 GSVHAHNVGVSLLTKVGLKHLI-----AKNE-----DEYVQLALQLASDVT---ALANLRMSLRDLMSKS 849 (944)
Q Consensus 793 g~~~~~r~~~~~l~~~gl~~~v-----~~~~-----~~y~~~a~~l~~d~~---~~~~~r~~~~~~~~~~ 849 (944)
=..-.-.--.|+|.-+.+|.-| +=+. ..+...-+-=..|++ +++.+|+++++.+...
T Consensus 98 ~~~~~l~G~dsLlS~vqmP~GvPVatV~I~~a~~~nAa~lAa~ILa~~d~~l~~kl~~~r~~~~~~v~~~ 167 (174)
T 3kuu_A 98 VQSAALSGVDSLYSIVQMPRGIPVGTLAIGKAGAANAALLAAQILALHDTELAGRLAHWRQSQTDDVLDN 167 (174)
T ss_dssp ECCTTTTTHHHHHHHHTCCTTSCCEECCSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCHHHHHHhhhCCCCCeeEEEEeCCccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 3321111124566666555432 2232 334333332345664 3444555555555443
No 389
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=25.88 E-value=2.3e+02 Score=33.22 Aligned_cols=119 Identities=9% Similarity=-0.039 Sum_probs=72.5
Q ss_pred CCcEEEccCccCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecCCC--ccccc-chhHHHhh--cCCccccc
Q 002273 741 SLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAGS--VHAHN-VGVSLLTK--VGLKHLIA 815 (944)
Q Consensus 741 ~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g~--~~~~r-~~~~~l~~--~gl~~~v~ 815 (944)
.++++.... ..+....+..+|+.+ ---+....|.+.+|.|||...-+ .+... -| +.-. --+|.-++
T Consensus 597 ~~~~~~~~~---~~di~~ll~~aD~lI----TDySSv~fD~~~l~kPiif~~~D~~~Y~~~~rg--~y~d~~~~~pg~~~ 667 (729)
T 3l7i_A 597 ENFAIDVSN---YNDVSELFLISDCLI----TDYSSVMFDYGILKRPQFFFAYDIDKYDKGLRG--FYMNYMEDLPGPIY 667 (729)
T ss_dssp TTTEEECTT---CSCHHHHHHTCSEEE----ESSCTHHHHHGGGCCCEEEECTTTTTTTSSCCS--BSSCTTSSSSSCEE
T ss_pred CCcEEeCCC---CcCHHHHHHHhCEEE----eechHHHHhHHhhCCCEEEecCCHHHHhhccCC--cccChhHhCCCCeE
Confidence 356655443 235566667899997 33456899999999999987432 22221 11 1101 13567889
Q ss_pred CCHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHHHHHHHHHH
Q 002273 816 KNEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLESTYRNMWH 870 (944)
Q Consensus 816 ~~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 870 (944)
.|.++.++...............++..+++. .+.-|+..--+-++.++...-.
T Consensus 668 ~~~~eL~~~i~~~~~~~~~~~~~~~~~~~~~--~~~~dg~as~ri~~~i~~~~~~ 720 (729)
T 3l7i_A 668 TEPYGLAKELKNLDKVQQQYQEKIDAFYDRF--CSVDNGKASQYIGDLIHKDIKE 720 (729)
T ss_dssp SSHHHHHHHHTTHHHHHHHTHHHHHHHHHHH--STTCCSCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhhhhccchhHHHHHHHHHHHh--CCccCChHHHHHHHHHHhcCcC
Confidence 9999998877666554444555566666665 3445666666666666655443
No 390
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=25.50 E-value=91 Score=25.12 Aligned_cols=30 Identities=23% Similarity=0.314 Sum_probs=22.1
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLE 76 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~ 76 (944)
.+..++..|...-..|+|++|+.+|.++++
T Consensus 15 ~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie 44 (86)
T 4a5x_A 15 AAATVLKRAVELDSESRYPQALVCYQEGID 44 (86)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445667777777788888888888777664
No 391
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=25.42 E-value=2.6e+02 Score=27.71 Aligned_cols=109 Identities=14% Similarity=0.099 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhc--ccccEEecCCCCCCcccH----HHhh---hcCCcEEecCC
Q 002273 723 CDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY--SLMDISLDTFPYAGTTTT----CESL---YMGVPCVTMAG 793 (944)
Q Consensus 723 ~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~--~~~Di~Ld~~~~~~~~t~----~eal---~~gvPvvt~~g 793 (944)
++.-..-+...|+..|.+ |+.+|.....+++.... ..+|++.=|+--+.+.+. ++.| ..++||+. -|
T Consensus 136 HdiG~~iva~~L~~~G~~---Vi~LG~~vp~e~l~~~~~~~~~d~V~lS~l~~~~~~~~~~~i~~l~~~~~~~~v~v-GG 211 (258)
T 2i2x_B 136 HDIGKNIVTALLRANGYN---VVDLGRDVPAEEVLAAVQKEKPIMLTGTALMTTTMYAFKEVNDMLLENGIKIPFAC-GG 211 (258)
T ss_dssp CCHHHHHHHHHHHHTTCE---EEEEEEECCSHHHHHHHHHHCCSEEEEECCCTTTTTHHHHHHHHHHTTTCCCCEEE-ES
T ss_pred cHHHHHHHHHHHHHCCCE---EEECCCCCCHHHHHHHHHHcCCCEEEEEeeccCCHHHHHHHHHHHHhcCCCCcEEE-EC
Confidence 334444555667777773 66666433356665554 356777655544444433 3333 23366554 33
Q ss_pred CcccccchhHHHhhcCCcccccCCHHHHHHHHHHHhcCHHHHHHHHH
Q 002273 794 SVHAHNVGVSLLTKVGLKHLIAKNEDEYVQLALQLASDVTALANLRM 840 (944)
Q Consensus 794 ~~~~~r~~~~~l~~~gl~~~v~~~~~~y~~~a~~l~~d~~~~~~~r~ 840 (944)
..+. ..+...+| .+..+.|..+=++.+.++.......+++|+
T Consensus 212 ~~~~----~~~~~~ig-ad~~~~da~~av~~~~~l~~~~~~~~~~~~ 253 (258)
T 2i2x_B 212 GAVN----QDFVSQFA-LGVYGEEAADAPKIADAIIAGTTDVTELRE 253 (258)
T ss_dssp TTCC----HHHHHTST-TEEECSSTTHHHHHHHHHHTTCCCHHHHHH
T ss_pred ccCC----HHHHHHcC-CeEEECCHHHHHHHHHHHHcchhhHHHHHH
Confidence 3332 23345667 567788889999999998876444444443
No 392
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Probab=25.37 E-value=72 Score=31.56 Aligned_cols=67 Identities=13% Similarity=0.202 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecCC
Q 002273 726 VRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG 793 (944)
Q Consensus 726 ~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g 793 (944)
...-+.+.+.+.|-..-.=.|+|....... ...+..=|+++-+-|-.-+....||-.+|+|||++..
T Consensus 82 ~q~~V~k~A~~~g~~~v~~rwlgGtLTN~~-t~~f~~PdllvV~Dp~~d~~ai~EA~~l~IP~Ial~D 148 (252)
T 3u5c_A 82 GQRAVLKFAAHTGATPIAGRFTPGSFTNYI-TRSFKEPRLVIVTDPRSDAQAIKEASYVNIPVIALTD 148 (252)
T ss_dssp HHHHHHHHHHHSSCEEEESCCCTTSSSCTT-STTCCCCSEEEESCTTTTHHHHHHHHTTTCCEEEEEC
T ss_pred HHHHHHHHHHHhCCceecCcccCCcccChh-hhhccCCceEEEeCCccchHHHHHHHHcCCCEEEEEc
Confidence 444455555666643211135555443222 2456677888777788889999999999999998653
No 393
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=25.05 E-value=5e+02 Score=25.51 Aligned_cols=46 Identities=20% Similarity=0.283 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHh-----hCCCCHH---HHHHHHHHHHH-cCCHHHHHHHHHHHHH
Q 002273 374 DKAVECYQMALS-----IKPNFSQ---SLNNLGVVYTV-QGKMDAAAEMIEKAIA 419 (944)
Q Consensus 374 ~~A~~~~~~al~-----~~p~~~~---~~~~la~~~~~-~g~~~~A~~~l~~al~ 419 (944)
+.|.+.|++|.+ +.|.+|- ...+.+..|+. +++.++|....+++++
T Consensus 148 ~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd 202 (248)
T 3uzd_A 148 ESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFD 202 (248)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455566666543 3566654 33444544444 6788888777777765
No 394
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=24.95 E-value=1.5e+02 Score=29.85 Aligned_cols=40 Identities=0% Similarity=-0.148 Sum_probs=26.8
Q ss_pred CCcEEEeecCCCccCcHHHHHHhhhhhccCCcEEEEEEec
Q 002273 509 RPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSA 548 (944)
Q Consensus 509 ~~lriGy~S~d~~~h~v~~~~~~~l~~~d~~~fev~~y~~ 548 (944)
.+++||++.++..+.-...++.++.......++++..+..
T Consensus 2 ~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~ 41 (297)
T 3rot_A 2 VRDKYYLITHGSQDPYWTSLFQGAKKAAEELKVDLQILAP 41 (297)
T ss_dssp -CCEEEEECSCCCSHHHHHHHHHHHHHHHHHTCEEEEECC
T ss_pred ceEEEEEEecCCCCchHHHHHHHHHHHHHHhCcEEEEECC
Confidence 4689999999984443455566665555556788877654
No 395
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B
Probab=24.90 E-value=1.1e+02 Score=30.15 Aligned_cols=67 Identities=15% Similarity=0.132 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHcCCCCC-cEEEccCccCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecCC
Q 002273 726 VRHRFLSTLEQLGLESL-RVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG 793 (944)
Q Consensus 726 ~~~~~~~~~~~~gi~~~-rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g 793 (944)
...-+.+.+...|-..- .=.|+|....... ...+..=|+++-+-|-.-+....||-.+|+|||++..
T Consensus 78 ~~~~V~~~A~~~g~~yv~~~RWlgG~LTN~~-t~~~~~PdlliV~Dp~~e~~ai~EA~~l~IPvIalvD 145 (241)
T 2xzm_B 78 GQRAAIKFAGYTHCKSTSSSRWTPGTLTNYQ-TLKYEEPRVLIVTDPRSDFQAIKEASYVNIPVIALCD 145 (241)
T ss_dssp HHHHHHHHHHHHTCBCCCCSSCCTTTTTCTT-CTTCCCCSEEEESCTTTTHHHHHHHTTTTCCEEECCC
T ss_pred HHHHHHHHHHHhCCEEeccccccCCcccCcc-ccccCCCCEEEEECCCcchHHHHHHHHhCCCEEEEec
Confidence 34445555556665432 2246666543321 1445667777666677888999999999999998764
No 396
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=24.64 E-value=1.3e+02 Score=28.79 Aligned_cols=34 Identities=15% Similarity=-0.092 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q 002273 82 VEAHIGKGICLQMQNMGRLAFDSFSEAVKLDPQN 115 (944)
Q Consensus 82 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 115 (944)
....+.+|..++..++|.+|.+.+..|++..|..
T Consensus 14 v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~ 47 (203)
T 3t5x_A 14 VTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRS 47 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTT
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHh
Confidence 3456777777777777777777777777776654
No 397
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=24.23 E-value=82 Score=29.39 Aligned_cols=64 Identities=13% Similarity=0.079 Sum_probs=40.1
Q ss_pred cccEEecCCCCCCcc--cHHHhhhcCCcEEecCCCcccccchhHHHhhcCCcc-cccCCHHHHHHHHHHHhc
Q 002273 762 LMDISLDTFPYAGTT--TTCESLYMGVPCVTMAGSVHAHNVGVSLLTKVGLKH-LIAKNEDEYVQLALQLAS 830 (944)
Q Consensus 762 ~~Di~Ld~~~~~~~~--t~~eal~~gvPvvt~~g~~~~~r~~~~~l~~~gl~~-~v~~~~~~y~~~a~~l~~ 830 (944)
.+|.++- +|=+.|| +..|++-.|.||+.+++.. +...++..-...- .+++|+++-++...++.+
T Consensus 107 ~sda~Iv-lpGg~GTL~E~~~al~~~kpV~~l~~~~----~~~gfi~~~~~~~i~~~~~~~e~~~~l~~~~~ 173 (176)
T 2iz6_A 107 SSNVLVA-VGMGPGTAAEVALALKAKKPVVLLGTQP----EAEKFFTSLDAGLVHVAADVAGAIAAVKQLLA 173 (176)
T ss_dssp GCSEEEE-ESCCHHHHHHHHHHHHTTCCEEEESCCH----HHHHHHHHHCTTTEEEESSHHHHHHHHHHHHH
T ss_pred hCCEEEE-ecCCccHHHHHHHHHHhCCcEEEEcCcc----cccccCChhhcCeEEEcCCHHHHHHHHHHHHH
Confidence 3555543 2323344 6778888999999999822 4455555533333 357888888877766543
No 398
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=24.20 E-value=2.1e+02 Score=28.34 Aligned_cols=68 Identities=13% Similarity=0.125 Sum_probs=45.0
Q ss_pred CCCcEEEeecCCCccCcHHHHHHhhhhhccCCcEEEEEEeccccCChhhHHHHHHHhhhCCceEeccCCCHHHHHHHhHh
Q 002273 508 ERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVRE 587 (944)
Q Consensus 508 ~~~lriGy~S~d~~~h~v~~~~~~~l~~~d~~~fev~~y~~~~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ 587 (944)
++..+||++.+++.+.-...++.++.......++++.++... ..+.. .+..+.+.+
T Consensus 3 ~~~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~-~~~~~-----------------------~~~~~~l~~ 58 (280)
T 3gyb_A 3 LRTQLIAVLIDDYSNPWFIDLIQSLSDVLTPKGYRLSVIDSL-TSQAG-----------------------TDPITSALS 58 (280)
T ss_dssp -CCCEEEEEESCTTSGGGHHHHHHHHHHHGGGTCEEEEECSS-SSCSS-----------------------SCHHHHHHT
T ss_pred CccCEEEEEeCCCCChHHHHHHHHHHHHHHHCCCEEEEEeCC-CchHH-----------------------HHHHHHHHh
Confidence 456789999998765545666677766666678888888665 22211 135566678
Q ss_pred CCccEEEecCCCC
Q 002273 588 DKIDILVELTGHT 600 (944)
Q Consensus 588 d~idilvdl~g~t 600 (944)
.++|-+| .....
T Consensus 59 ~~vdgiI-~~~~~ 70 (280)
T 3gyb_A 59 MRPDGII-IAQDI 70 (280)
T ss_dssp TCCSEEE-EESCC
T ss_pred CCCCEEE-ecCCC
Confidence 8999999 54433
No 399
>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A
Probab=23.69 E-value=35 Score=35.56 Aligned_cols=29 Identities=17% Similarity=0.112 Sum_probs=23.9
Q ss_pred ccccEEecCCCCCCcccHHHhhhcCCcEEe
Q 002273 761 SLMDISLDTFPYAGTTTTCESLYMGVPCVT 790 (944)
Q Consensus 761 ~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt 790 (944)
..-|++|||| .|.|||...|+-+|--.|.
T Consensus 241 ~~~~~vlDpF-~GsGtt~~aa~~~~r~~ig 269 (319)
T 1eg2_A 241 HPGSTVLDFF-AGSGVTARVAIQEGRNSIC 269 (319)
T ss_dssp CTTCEEEETT-CTTCHHHHHHHHHTCEEEE
T ss_pred CCCCEEEecC-CCCCHHHHHHHHcCCcEEE
Confidence 3469999997 4779999999999976665
No 400
>1e5p_A Aphrodisin; lipocalin, pheromone, hamster,; HET: MSE; 1.63A {Mesocricetus auratus} SCOP: b.60.1.1
Probab=23.49 E-value=85 Score=28.11 Aligned_cols=38 Identities=5% Similarity=-0.088 Sum_probs=30.6
Q ss_pred ceEEEec-CCCCCHHHHHHHHHHHHHcCCCCCcEEEccC
Q 002273 712 SRLVVKC-KPFCCDSVRHRFLSTLEQLGLESLRVDLLPL 749 (944)
Q Consensus 712 ~~l~~~~-~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~ 749 (944)
-.+||.+ .+..++.+.+++.+.+...|++.+++++++.
T Consensus 107 ~~~~llsR~~~l~~e~~~~f~~~~~~~G~~~~~ii~~~~ 145 (151)
T 1e5p_A 107 NMIVVAGKGNALTPEENEILVQFAHEKKIPVENILNILA 145 (151)
T ss_dssp EEEEEEESSSCCCHHHHHHHHHHHHHTTCCGGGEEECGG
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHcCCCHHHEEECCc
Confidence 4567765 3445788999999999999999999998765
No 401
>2k1s_A Inner membrane lipoprotein YIAD; abbababab, OMPA, alpha beta, ME palmitate, transmembrane, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=23.22 E-value=1.1e+02 Score=27.38 Aligned_cols=58 Identities=21% Similarity=0.170 Sum_probs=38.7
Q ss_pred CcCCHH---HHHHHHHHHhHcCCceEEEecCCC--CCHH--------HHHHHHHHHHHcCCCCCcEEEccC
Q 002273 692 AKITPK---VLQVWARILCAVPNSRLVVKCKPF--CCDS--------VRHRFLSTLEQLGLESLRVDLLPL 749 (944)
Q Consensus 692 ~K~~~~---~~~~~~~il~~~p~~~l~~~~~~~--~~~~--------~~~~~~~~~~~~gi~~~rv~~~~~ 749 (944)
..++|+ .++-++.+|+..|+..+.|.|..- +... -...+...+.+.||+++||...|.
T Consensus 43 ~~L~~~~~~~L~~ia~~L~~~~~~~i~I~GhtD~~G~~~~N~~LS~~RA~aV~~~L~~~Gv~~~ri~~~g~ 113 (149)
T 2k1s_A 43 ATLKPAGANTLTGVAMVLKEYPKTAVNVIGYTDSTGGHDLNMRLSQQRADSVASALITQGVDASRIRTQGL 113 (149)
T ss_dssp SCBCHHHHHHHHHHHHHHHHCTTEEEEEEEECCCTTCHHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEC
T ss_pred ccCCHHHHHHHHHHHHHHHhCCCceEEEEEEcCCCCChHHHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEE
Confidence 445554 566777888899998888876321 2211 123456667778999999987665
No 402
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=23.04 E-value=3.4e+02 Score=22.79 Aligned_cols=96 Identities=11% Similarity=0.103 Sum_probs=55.2
Q ss_pred ceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcc---------cccEE-ecCC-CCCCcccHHH
Q 002273 712 SRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYS---------LMDIS-LDTF-PYAGTTTTCE 780 (944)
Q Consensus 712 ~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~---------~~Di~-Ld~~-~~~~~~t~~e 780 (944)
.+++++.. +...+..+...+...|.. ..|..... ..+.+..+. ..|++ +|.. |-..|...++
T Consensus 3 ~~ilivdd---~~~~~~~l~~~L~~~~~~-~~v~~~~~---~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~ 75 (140)
T 1k68_A 3 KKIFLVED---NKADIRLIQEALANSTVP-HEVVTVRD---GMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLA 75 (140)
T ss_dssp CEEEEECC---CHHHHHHHHHHHHTCSSC-CEEEEECS---HHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHH
T ss_pred CeEEEEeC---CHHHHHHHHHHHHhcCCC-ceEEEECC---HHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHH
Confidence 34555543 346788899999988873 34554433 355555543 46877 4543 3334556666
Q ss_pred hhh-----cCCcEEecCCCcccccchhHHHhhcCCcccccC
Q 002273 781 SLY-----MGVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK 816 (944)
Q Consensus 781 al~-----~gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~ 816 (944)
.+. .++|||.+.+..-...+ .-....|..+++.+
T Consensus 76 ~l~~~~~~~~~pii~ls~~~~~~~~--~~~~~~g~~~~l~k 114 (140)
T 1k68_A 76 EIKSDPTLKRIPVVVLSTSINEDDI--FHSYDLHVNCYITK 114 (140)
T ss_dssp HHHHSTTGGGSCEEEEESCCCHHHH--HHHHHTTCSEEEEC
T ss_pred HHHcCcccccccEEEEecCCcHHHH--HHHHHhchhheecC
Confidence 664 57899987765432211 11224477776654
No 403
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=23.03 E-value=2.8e+02 Score=23.55 Aligned_cols=102 Identities=11% Similarity=0.150 Sum_probs=57.6
Q ss_pred CceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhc--ccccEE-ecCC-CCCCcccHHHhhhc--
Q 002273 711 NSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY--SLMDIS-LDTF-PYAGTTTTCESLYM-- 784 (944)
Q Consensus 711 ~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~--~~~Di~-Ld~~-~~~~~~t~~eal~~-- 784 (944)
..+++++.. ++..+..+...+.+.|.. |..... ..+.+..+ ...|++ +|.. |-..|...++.+..
T Consensus 6 ~~~iLivdd---~~~~~~~l~~~l~~~g~~---v~~~~~---~~~a~~~l~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~ 76 (140)
T 3grc_A 6 RPRILICED---DPDIARLLNLMLEKGGFD---SDMVHS---AAQALEQVARRPYAAMTVDLNLPDQDGVSLIRALRRDS 76 (140)
T ss_dssp CSEEEEECS---CHHHHHHHHHHHHHTTCE---EEEECS---HHHHHHHHHHSCCSEEEECSCCSSSCHHHHHHHHHTSG
T ss_pred CCCEEEEcC---CHHHHHHHHHHHHHCCCe---EEEECC---HHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhCc
Confidence 345666543 346788888899998873 444332 34444443 335776 5544 44556667776654
Q ss_pred ---CCcEEecCCCcccccchhHHHhhcCCcccccC--CHHHHH
Q 002273 785 ---GVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK--NEDEYV 822 (944)
Q Consensus 785 ---gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~--~~~~y~ 822 (944)
.+|||.+.+..-..... .-....|..+++.+ +.++..
T Consensus 77 ~~~~~~ii~~s~~~~~~~~~-~~~~~~g~~~~l~kP~~~~~l~ 118 (140)
T 3grc_A 77 RTRDLAIVVVSANAREGELE-FNSQPLAVSTWLEKPIDENLLI 118 (140)
T ss_dssp GGTTCEEEEECTTHHHHHHH-HCCTTTCCCEEECSSCCHHHHH
T ss_pred ccCCCCEEEEecCCChHHHH-HHhhhcCCCEEEeCCCCHHHHH
Confidence 79999887654222111 01224477777755 444443
No 404
>2hlv_A Odorant-binding protein; domain swapping, transport protein; HET: LIK; 1.65A {Bos taurus} PDB: 1gt1_A* 1gt3_A* 1gt4_A* 1gt5_A* 1hn2_A* 1obp_A 1g85_A 1pbo_A*
Probab=22.98 E-value=92 Score=28.23 Aligned_cols=39 Identities=15% Similarity=-0.004 Sum_probs=31.4
Q ss_pred ceEEEecC-CCCCHHHHHHHHHHHHHcCCCCCcEEEccCc
Q 002273 712 SRLVVKCK-PFCCDSVRHRFLSTLEQLGLESLRVDLLPLI 750 (944)
Q Consensus 712 ~~l~~~~~-~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~ 750 (944)
-.+||.+. +..++.+.+.+.+.+..+|++.+++++++..
T Consensus 114 ~~~~llsR~~~~~~e~~~~f~~~~~~~G~~~~~i~~~~~~ 153 (160)
T 2hlv_A 114 ELTELFVKGLNVEDEDLEKFWKLTEDKGIDKKNVVNFLEN 153 (160)
T ss_dssp EEEEEEECSSSCCHHHHHHHHHHHHHTTCCGGGEEETTSC
T ss_pred EEEEEEccCCCCCHHHHHHHHHHHHHcCCCHHHEEECCCC
Confidence 35677654 5567889999999999999999999987653
No 405
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=22.76 E-value=4e+02 Score=27.75 Aligned_cols=65 Identities=20% Similarity=0.144 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHHHHcCC--hHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh
Q 002273 322 YADAMYNLGVAYGEMLK--FDMAIVFYELAFHF-----NPHCAEACNNLGVIYKDRDNLDKAVECYQMALSI 386 (944)
Q Consensus 322 ~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 386 (944)
.+.++.+||.+-...-- ...++.+|.+++.. ......-|..+|-.+++.+++.+|++.+-.+-..
T Consensus 254 YPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa~V 325 (472)
T 3re2_A 254 YPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAGYV 325 (472)
T ss_dssp CHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHHHH
Confidence 45566666655443322 22377778777765 3445677888999999999999999999887543
No 406
>3oon_A Outer membrane protein (TPN50); protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; 1.79A {Borrelia burgdorferi}
Probab=22.52 E-value=1.3e+02 Score=25.82 Aligned_cols=53 Identities=8% Similarity=0.085 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhHcCCceEEEecCCC--CCHH--------HHHHHHHHHHHcCCC-CCcEEEccC
Q 002273 697 KVLQVWARILCAVPNSRLVVKCKPF--CCDS--------VRHRFLSTLEQLGLE-SLRVDLLPL 749 (944)
Q Consensus 697 ~~~~~~~~il~~~p~~~l~~~~~~~--~~~~--------~~~~~~~~~~~~gi~-~~rv~~~~~ 749 (944)
..++-++.+|+..|+..+.|.|..- +... -...+...+.+.||+ ++|+...|.
T Consensus 34 ~~L~~~a~~l~~~~~~~i~I~GhtD~~g~~~~N~~LS~~RA~aV~~~L~~~Gv~~~~ri~~~g~ 97 (123)
T 3oon_A 34 KKIDLIAKLLEKFKKNNILIEGHTEQFGLEEEMHELSEKRARAIGNYLIKMKVKDKDQILFKGW 97 (123)
T ss_dssp HHHHHHHHHHHHSCSCCEEEEECCCSCCCHHHHHHHHHHHHHHHHHHHHHTTSSCGGGEEEEEC
T ss_pred HHHHHHHHHHHHCCCceEEEEEEeCCCCChHHHHHHHHHHHHHHHHHHHHcCCCchHeEEEEEE
Confidence 5677788889999998888876432 2222 124566778889999 899987665
No 407
>3ldt_A Outer membrane protein, OMPA family protein; OMPA-like domain, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.30A {Legionella pneumophila}
Probab=22.39 E-value=1.5e+02 Score=27.25 Aligned_cols=74 Identities=16% Similarity=0.012 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhHcCCceEEEecCCC--CCH--------HHHHHHHHHHHHcCCCCCcEEEccCccCc-------HHHHHh
Q 002273 697 KVLQVWARILCAVPNSRLVVKCKPF--CCD--------SVRHRFLSTLEQLGLESLRVDLLPLILLN-------HDHMQA 759 (944)
Q Consensus 697 ~~~~~~~~il~~~p~~~l~~~~~~~--~~~--------~~~~~~~~~~~~~gi~~~rv~~~~~~~~~-------~~~~~~ 759 (944)
..++-++.+|+..|+..+.|.|..- +.. .-...+...+.+.||+++|+...+.-... .+-.+.
T Consensus 71 ~~L~~la~~l~~~~~~~i~I~GhTD~~G~~~~N~~LS~~RA~aV~~~L~~~Gv~~~ri~~~g~G~~~P~~~n~t~~~r~~ 150 (169)
T 3ldt_A 71 PGLNNVIRLLNFYPQSTIYVAGFTDNVGSRSHKRKLSQAQAETMMTFLWANGIAAKRLKAEGYGDKNAISDNAIIHGSAQ 150 (169)
T ss_dssp HHHHHHHHHHTTCTTSCEEEEEECTTSCCC--CHHHHHHHHHHHHHHHHHTTCCTTTEEECCTTCTTSCCCTTTSCGGGG
T ss_pred HHHHHHHHHHHhCCCCeEEEEeEeCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEECCcCCCCCCCChhHHHh
Confidence 4567778889999998888876321 111 12245677788899999999887653211 111233
Q ss_pred cccccEEecCC
Q 002273 760 YSLMDISLDTF 770 (944)
Q Consensus 760 ~~~~Di~Ld~~ 770 (944)
-+.++|.+.+.
T Consensus 151 NRRVei~~~~~ 161 (169)
T 3ldt_A 151 NRRIEIQWFTS 161 (169)
T ss_dssp TSEEEEEEECC
T ss_pred cCcEEEEEecC
Confidence 45667776554
No 408
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=22.16 E-value=93 Score=25.48 Aligned_cols=30 Identities=20% Similarity=0.287 Sum_probs=19.3
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 002273 47 EGKDALSYANILRSRNKFVDALALYEIVLE 76 (944)
Q Consensus 47 ~~~~~~~~A~~~~~~g~~~~A~~~~~~al~ 76 (944)
.+-.++..|...-..|+|++|+.+|..+++
T Consensus 14 ~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie 43 (93)
T 1wfd_A 14 AAVAVLKRAVELDAESRYQQALVCYQEGID 43 (93)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344556666666777777777777666544
No 409
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=21.85 E-value=2.1e+02 Score=23.34 Aligned_cols=57 Identities=11% Similarity=0.042 Sum_probs=33.6
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCCH----HHHHHH--HHHHHHhCCHHHHHHHHHHHHh
Q 002273 52 LSYANILRSRNKFVDALALYEIVLEKDSGNV----EAHIGK--GICLQMQNMGRLAFDSFSEAVK 110 (944)
Q Consensus 52 ~~~A~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l--a~~~~~~g~~~~A~~~~~~al~ 110 (944)
+..|..++..|+|=+|-+.++.+-...|... ..+..+ |......|+. |...+.+++.
T Consensus 5 ~~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 5 WEEVLGLWRAGRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 4567778888888888888888877765421 111222 2222344555 6666666554
No 410
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.26 E-value=4.8e+02 Score=27.69 Aligned_cols=61 Identities=7% Similarity=0.058 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 002273 393 SLNNLGVVYTVQGKMDAAAEMIEKAIAA-------NPT-YAEAYNNLGVLYRDAGSISLAIDAYEQCLK 453 (944)
Q Consensus 393 ~~~~la~~~~~~g~~~~A~~~l~~al~~-------~p~-~~~a~~~la~~~~~~g~~~eA~~~~~~al~ 453 (944)
+...++..|...|+.++|..+++++-.. +|. ....+...+..|...+++.++....-.++.
T Consensus 129 i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~ 197 (393)
T 4b4t_O 129 IDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLS 197 (393)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 3344555555556666665555555432 110 122333445555556666555554444443
No 411
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=21.18 E-value=4.1e+02 Score=23.04 Aligned_cols=136 Identities=17% Similarity=0.168 Sum_probs=71.4
Q ss_pred ceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcc--cccEE-ecCC-CCCCcccHHHhhh---c
Q 002273 712 SRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYS--LMDIS-LDTF-PYAGTTTTCESLY---M 784 (944)
Q Consensus 712 ~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~--~~Di~-Ld~~-~~~~~~t~~eal~---~ 784 (944)
.+++++.. ++..+..+...+...|.. |.... +..+.+..+. ..|++ +|.. |-..|...++.+. -
T Consensus 4 ~~ILivdd---~~~~~~~l~~~L~~~g~~---v~~~~---~~~~a~~~l~~~~~dliild~~l~~~~g~~~~~~l~~~~~ 74 (155)
T 1qkk_A 4 PSVFLIDD---DRDLRKAMQQTLELAGFT---VSSFA---SATEALAGLSADFAGIVISDIRMPGMDGLALFRKILALDP 74 (155)
T ss_dssp CEEEEECS---CHHHHHHHHHHHHHTTCE---EEEES---CHHHHHHTCCTTCCSEEEEESCCSSSCHHHHHHHHHHHCT
T ss_pred CEEEEEeC---CHHHHHHHHHHHHHcCcE---EEEEC---CHHHHHHHHHhCCCCEEEEeCCCCCCCHHHHHHHHHhhCC
Confidence 34555543 346788888889888873 44332 2456665543 35776 5543 3334555566553 4
Q ss_pred CCcEEecCCCcccccchhHHHhhcCCcccccC--CHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCCCCChHHHHHHHH
Q 002273 785 GVPCVTMAGSVHAHNVGVSLLTKVGLKHLIAK--NEDEYVQLALQLASDVTALANLRMSLRDLMSKSPVCDGQNFALGLE 862 (944)
Q Consensus 785 gvPvvt~~g~~~~~r~~~~~l~~~gl~~~v~~--~~~~y~~~a~~l~~d~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~e 862 (944)
++|||.+.+..-... ..-....|..+++.. +.++......++.... +++. ......+.+|
T Consensus 75 ~~pii~ls~~~~~~~--~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~~----~~~~------------~~~~~~~~~~ 136 (155)
T 1qkk_A 75 DLPMILVTGHGDIPM--AVQAIQDGAYDFIAKPFAADRLVQSARRAEEKR----RLVM------------ENRSLRRAAE 136 (155)
T ss_dssp TSCEEEEECGGGHHH--HHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH----HHHH------------HHHHHHHHHH
T ss_pred CCCEEEEECCCChHH--HHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHH----HHHH------------HHHHHHHHHH
Confidence 799998876543221 122334688888865 5555554444333211 1111 1234566777
Q ss_pred HHHHHHHHHHhc
Q 002273 863 STYRNMWHRYCK 874 (944)
Q Consensus 863 ~~~~~~~~~~~~ 874 (944)
+.-+.+|.-+..
T Consensus 137 ~~~~~l~~~~~~ 148 (155)
T 1qkk_A 137 AASEGLKLAAAL 148 (155)
T ss_dssp HHHHHC------
T ss_pred HHHHHHhhchhh
Confidence 877777764443
No 412
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=21.10 E-value=1.4e+02 Score=27.20 Aligned_cols=82 Identities=12% Similarity=0.103 Sum_probs=45.2
Q ss_pred CCceEEEecCCCCCHHH---HHHHHHHHHHcCC-CCCcEEEccCccC----------------------cHHHHHhcccc
Q 002273 710 PNSRLVVKCKPFCCDSV---RHRFLSTLEQLGL-ESLRVDLLPLILL----------------------NHDHMQAYSLM 763 (944)
Q Consensus 710 p~~~l~~~~~~~~~~~~---~~~~~~~~~~~gi-~~~rv~~~~~~~~----------------------~~~~~~~~~~~ 763 (944)
|..++.|.|+ +-++.. ..++.+.++++|. +... +|.|.... ...-+..+..|
T Consensus 2 ~~~kIYLAGP-~F~~~q~~~~~~~~~~L~~~g~v~~~~-v~~P~~~~~~~~~~~~~~~~~~~~~~~~~I~~~D~~~i~~a 79 (157)
T 1f8y_A 2 PKKTIYFGAG-WFTDRQNKAYKEAMEALKENPTIDLEN-SYVPLDNQYKGIRVDEHPEYLHDKVWATATYNNDLNGIKTN 79 (157)
T ss_dssp CCBCEEEECC-CSSHHHHHHHHHHHHHHHHCTTBCCTT-SBCGGGCSGGGCCTTTCGGGGGCHHHHHHHHHHHHHHHHTS
T ss_pred CCcEEEEECC-CCCHHHHHHHHHHHHHHHHCCCccccc-eECcccccccccccccccccccChHHHHHHHHHhHHHHHhC
Confidence 4556777764 444333 3556677778873 2222 23343210 11224456789
Q ss_pred cEE---ecCCCCCCcccHHH---hhhcCCcEEecCCC
Q 002273 764 DIS---LDTFPYAGTTTTCE---SLYMGVPCVTMAGS 794 (944)
Q Consensus 764 Di~---Ld~~~~~~~~t~~e---al~~gvPvvt~~g~ 794 (944)
|++ ||. +..-.-|..| |.+.|.|||.+..+
T Consensus 80 D~vvA~ldg-~~~D~GT~~EiGyA~A~gkPVv~~~~~ 115 (157)
T 1f8y_A 80 DIMLGVYIP-DEEDVGLGMELGYALSQGKYVLLVIPD 115 (157)
T ss_dssp SEEEEECCG-GGCCHHHHHHHHHHHHTTCEEEEEECG
T ss_pred CEEEEEcCC-CCCCccHHHHHHHHHHCCCeEEEEEcC
Confidence 998 452 2222334555 78899999998644
No 413
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=20.93 E-value=2.6e+02 Score=27.50 Aligned_cols=102 Identities=12% Similarity=0.063 Sum_probs=56.9
Q ss_pred CCCcEEEeecCCCccCcHHHHHHhhhhhccCCcEEEEEEeccccCChhhHHHHHHHhhhCCceEeccCCCHHHHHHHhHh
Q 002273 508 ERPLVIGYVSPDYFTHSVSYFIEAPLVYHDYQNYKVVVYSAVVKADAKTIRFREKVMKKGGIWRDIYGIDEKKVAAMVRE 587 (944)
Q Consensus 508 ~~~lriGy~S~d~~~h~v~~~~~~~l~~~d~~~fev~~y~~~~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ 587 (944)
++..+||++-+++.+.-...++.++.......++++.++.... |... ..+..+.+.+
T Consensus 5 ~~s~~Igvi~~~~~~~~~~~~~~gi~~~~~~~g~~~~~~~~~~--~~~~---------------------~~~~~~~l~~ 61 (276)
T 3jy6_A 5 QSSKLIAVIVANIDDYFSTELFKGISSILESRGYIGVLFDANA--DIER---------------------EKTLLRAIGS 61 (276)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHHHHHHHHHTTTCEEEEEECTT--CHHH---------------------HHHHHHHHHT
T ss_pred CCCcEEEEEeCCCCchHHHHHHHHHHHHHHHCCCEEEEEeCCC--CHHH---------------------HHHHHHHHHh
Confidence 5667899999988554455666677666677788888876542 2111 1235555667
Q ss_pred CCccEEEecCCCCCCCchhhhccCCcceeeecccCCCCCCCCCccEEEec
Q 002273 588 DKIDILVELTGHTANNKLGMMACQPAPVQVTWIGYPNTTGLPTIDYRITD 637 (944)
Q Consensus 588 d~idilvdl~g~t~~~~~~~~a~r~ApvQ~~~~G~p~t~g~~~~Dy~i~d 637 (944)
.++|-+|-..... ...+.. ++-+.+-+..+|.+... +.++++.+|
T Consensus 62 ~~vdgiIi~~~~~-~~~~~~--l~~~~iPvV~i~~~~~~--~~~~~V~~D 106 (276)
T 3jy6_A 62 RGFDGLILQSFSN-PQTVQE--ILHQQMPVVSVDREMDA--CPWPQVVTD 106 (276)
T ss_dssp TTCSEEEEESSCC-HHHHHH--HHTTSSCEEEESCCCTT--CSSCEEECC
T ss_pred CCCCEEEEecCCc-HHHHHH--HHHCCCCEEEEecccCC--CCCCEEEEC
Confidence 7888777554333 222222 22233333444543221 235666655
No 414
>3u84_A Menin; MLL, JUND, ledgf, TPR, transglutaminase-like, transcription, epigenetics, cancer; 2.50A {Homo sapiens} PDB: 3u85_A 3u86_A 3u88_A*
Probab=20.79 E-value=4.2e+02 Score=28.18 Aligned_cols=45 Identities=7% Similarity=0.042 Sum_probs=30.9
Q ss_pred HHHHHHHHHhh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 002273 376 AVECYQMALSI-----KPNFSQSLNNLGVVYTVQGKMDAAAEMIEKAIAA 420 (944)
Q Consensus 376 A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 420 (944)
++.+|.+++.. ...+...|..+|-.+++.+++.+|+..+-.+-..
T Consensus 298 ~~~L~~~AI~sa~~~Y~n~HvYPYtYlgGy~yR~~~~reAl~~WA~Aa~V 347 (550)
T 3u84_A 298 PLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATV 347 (550)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccceeecchhhhhcchHHHHHHHHHHHHHH
Confidence 55666666543 3445667777788888888888888887776543
No 415
>3cyp_B Chemotaxis protein MOTB; bacterial flagellar motor, peptidoglycan binding, bacterial flagellum, flagellar rotation, inner membrane, membrane; 1.60A {Helicobacter pylori} PDB: 3cyq_B* 3imp_B
Probab=20.74 E-value=1.4e+02 Score=26.42 Aligned_cols=58 Identities=16% Similarity=0.198 Sum_probs=38.4
Q ss_pred Cc-CCHH---HHHHHHHHHhHcC-CceEEEecCCCC--C--HH----------HHHHHHHHHHHcCCCCCcEEEccC
Q 002273 692 AK-ITPK---VLQVWARILCAVP-NSRLVVKCKPFC--C--DS----------VRHRFLSTLEQLGLESLRVDLLPL 749 (944)
Q Consensus 692 ~K-~~~~---~~~~~~~il~~~p-~~~l~~~~~~~~--~--~~----------~~~~~~~~~~~~gi~~~rv~~~~~ 749 (944)
.. ++|. .++-.+++|+..| +..+.|.|..-. . .. -...+...+...||+++||...|.
T Consensus 12 ~~~l~~~~~~~L~~ia~~l~~~p~~~~i~I~GhtD~~g~~~~~~~~N~~LS~~RA~aV~~~L~~~Gv~~~ri~~~g~ 88 (138)
T 3cyp_B 12 SDAINQDMMLYIERIAKIIQKLPKRVHINVRGFTDDTPLVKTRFKSHYELAANRAYRVMKVLIQYGVNPNQLSFSSY 88 (138)
T ss_dssp CCCCCHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCCCC----CCSHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEC
T ss_pred cccCCHHHHHHHHHHHHHHHhCCCCcEEEEEEecCCCCcccccchhHHHHHHHHHHHHHHHHHHcCCCHHHEEEEEE
Confidence 44 6665 4566677788999 888888763211 1 11 124466777888999999987654
No 416
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=20.69 E-value=73 Score=25.15 Aligned_cols=30 Identities=17% Similarity=0.213 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Q 002273 48 GKDALSYANILRSRNKFVDALALYEIVLEK 77 (944)
Q Consensus 48 ~~~~~~~A~~~~~~g~~~~A~~~~~~al~~ 77 (944)
.-..+.+|+.+...|+|+.|+.+|+.+++.
T Consensus 12 i~e~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 12 IVENVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 455677888888888888888888877663
No 417
>1bj7_A D 2; allergen, lipocalin; 1.80A {Bos taurus} SCOP: b.60.1.1
Probab=20.56 E-value=96 Score=27.96 Aligned_cols=38 Identities=5% Similarity=-0.074 Sum_probs=30.3
Q ss_pred ceEEEec-CCCCCHHHHHHHHHHHHHcCCCCCcEEEccC
Q 002273 712 SRLVVKC-KPFCCDSVRHRFLSTLEQLGLESLRVDLLPL 749 (944)
Q Consensus 712 ~~l~~~~-~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~ 749 (944)
-.+||.+ .+..++...+++.+.++++|++.+++++++.
T Consensus 112 ~~~~llsR~~~l~~e~~~~f~~~~~~~G~~~~~i~~~~~ 150 (156)
T 1bj7_A 112 KMTEGLAKGTSFTPEELEKYQQLNSERGVPNENIENLIK 150 (156)
T ss_dssp EEEEEEESSSCCCHHHHHHHHHHHHHHTCCGGGEEECGG
T ss_pred EEEEEEecCCCCCHHHHHHHHHHHHHcCCCHHHEEecCC
Confidence 3567665 3445778999999999999999999998765
No 418
>1ou0_A Precorrin-8X methylmutase related protein; structural genomics, PSI, protein structure initiative; 2.10A {Thermoplasma acidophilum dsm 1728} SCOP: c.23.17.1
Probab=20.37 E-value=2e+02 Score=27.38 Aligned_cols=83 Identities=13% Similarity=0.239 Sum_probs=52.0
Q ss_pred HHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCCCCccc
Q 002273 698 VLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTT 777 (944)
Q Consensus 698 ~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~~~~t 777 (944)
-++.|.+ +.|++.+.+.+-| ..--+|.+..++-++.|.=|+=.|- -|-|..-
T Consensus 119 a~~~~~~---~l~~~I~aIGNAP----TAL~~Lleli~~g~~~PalVIG~PV---------------------GFVgaaE 170 (207)
T 1ou0_A 119 GIRIAMQ---DHRNSVIVIGNAP----TALLEAMRMIEENGWYDIPIVGIPV---------------------GFINASK 170 (207)
T ss_dssp HHHHHHH---HCSSEEEEESSCH----HHHHHHHHHHHHHTCTTCCEEECCC---------------------CSHHHHH
T ss_pred HHHHHHH---HcCCcEEEEeCcH----HHHHHHHHHHHcCCCCCcEEEEeCC---------------------CccCHHH
Confidence 3444544 5688766665443 5667788888776777665654331 1111111
Q ss_pred HHHhh-hcCCcEEecCCCcccccchhHHHhhc
Q 002273 778 TCESL-YMGVPCVTMAGSVHAHNVGVSLLTKV 808 (944)
Q Consensus 778 ~~eal-~~gvPvvt~~g~~~~~r~~~~~l~~~ 808 (944)
+=|+| -.|||-||..|+.=-|-+++++++++
T Consensus 171 SK~~L~~~~vP~I~~~GrkGGS~vAaAivNAL 202 (207)
T 1ou0_A 171 AKEGLVSSHIEYISVEGHRGGSPIAASIVNGF 202 (207)
T ss_dssp HHHHHHHSSSCEEEESSSCCCHHHHHHHHHHH
T ss_pred HHHHHhcCCCCEEEEeCCCCCHHHHHHHHHHH
Confidence 11223 24899999999888888888888875
No 419
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=20.28 E-value=4.2e+02 Score=24.20 Aligned_cols=95 Identities=17% Similarity=0.220 Sum_probs=56.5
Q ss_pred cCCHHHHHHHHHHHhHcCCceEEEecCCCCCHHHHHHHHHHHHHcCCCCCcEEEccC-ccCcHHHHHhcccccEEecCCC
Q 002273 693 KITPKVLQVWARILCAVPNSRLVVKCKPFCCDSVRHRFLSTLEQLGLESLRVDLLPL-ILLNHDHMQAYSLMDISLDTFP 771 (944)
Q Consensus 693 K~~~~~~~~~~~il~~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~-~~~~~~~~~~~~~~Di~Ld~~~ 771 (944)
.++++.++-.++.+.... ++++.|.|. +......+...+...|+. +.+.+. .......+.....-|+++- +-
T Consensus 23 ~l~~~~l~~~~~~i~~a~--~I~i~G~G~-S~~~a~~~~~~l~~~g~~---~~~~~~~~~~~~~~~~~~~~~d~~i~-iS 95 (187)
T 3sho_A 23 QTQPEAIEAAVEAICRAD--HVIVVGMGF-SAAVAVFLGHGLNSLGIR---TTVLTEGGSTLTITLANLRPTDLMIG-VS 95 (187)
T ss_dssp TCCHHHHHHHHHHHHHCS--EEEEECCGG-GHHHHHHHHHHHHHTTCC---EEEECCCTHHHHHHHHTCCTTEEEEE-EC
T ss_pred hCCHHHHHHHHHHHHhCC--EEEEEecCc-hHHHHHHHHHHHHhcCCC---EEEecCCchhHHHHHhcCCCCCEEEE-Ee
Confidence 356677777777777653 777776653 345666777778888773 555441 1111223444555677654 34
Q ss_pred CCCcc-cHHHhh----hcCCcEEecCCC
Q 002273 772 YAGTT-TTCESL----YMGVPCVTMAGS 794 (944)
Q Consensus 772 ~~~~~-t~~eal----~~gvPvvt~~g~ 794 (944)
++|.| .+++++ -.|+|||++.+.
T Consensus 96 ~sG~t~~~~~~~~~ak~~g~~vi~IT~~ 123 (187)
T 3sho_A 96 VWRYLRDTVAALAGAAERGVPTMALTDS 123 (187)
T ss_dssp CSSCCHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CCCCCHHHHHHHHHHHHCCCCEEEEeCC
Confidence 45544 444443 569999987653
No 420
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=20.16 E-value=5e+02 Score=23.66 Aligned_cols=94 Identities=11% Similarity=-0.015 Sum_probs=56.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhc------ccccEEecCCCCCCcccHHHhhhcCCcEEecC
Q 002273 719 KPFCCDSVRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAY------SLMDISLDTFPYAGTTTTCESLYMGVPCVTMA 792 (944)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~------~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~ 792 (944)
++..+.+.-+.....++.+||+.+ +...+.-.. .+.+..| +.++|++--=--.++...+=|-..-+|||..|
T Consensus 11 gs~SD~~v~~~a~~~l~~~gi~~e-v~V~SaHR~-p~~~~~~~~~a~~~g~~ViIa~AG~aa~LpgvvA~~t~~PVIgVP 88 (163)
T 3ors_A 11 GSSSDWKIMQESCNMLDYFEIPYE-KQVVSAHRT-PKMMVQFASEARERGINIIIAGAGGAAHLPGMVASLTTLPVIGVP 88 (163)
T ss_dssp SCGGGHHHHHHHHHHHHHTTCCEE-EEECCTTTS-HHHHHHHHHHTTTTTCCEEEEEEESSCCHHHHHHHHCSSCEEEEE
T ss_pred CcHHHHHHHHHHHHHHHHcCCCEE-EEEECCcCC-HHHHHHHHHHHHhCCCcEEEEECCchhhhHHHHHhccCCCEEEee
Confidence 344456677778888999999643 444443332 3344333 33788876555566776676777889999876
Q ss_pred CCcccccchhHHHhhcCCcccc
Q 002273 793 GSVHAHNVGVSLLTKVGLKHLI 814 (944)
Q Consensus 793 g~~~~~r~~~~~l~~~gl~~~v 814 (944)
=..-.-.--.|+|.-+.+|.-|
T Consensus 89 ~~~~~l~G~dsLlS~vqmp~Gv 110 (163)
T 3ors_A 89 IETKSLKGIDSLLSIVQMPGGI 110 (163)
T ss_dssp ECCTTTTTHHHHHHHHTCCTTS
T ss_pred CCCCCCCCHHHHHHHhhCCCCC
Confidence 3321111234577766666543
No 421
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=20.15 E-value=1.4e+02 Score=27.51 Aligned_cols=36 Identities=8% Similarity=0.032 Sum_probs=22.9
Q ss_pred HHhcccccEEec--CCCCCCcccHHH---hhhcCCcEEecC
Q 002273 757 MQAYSLMDISLD--TFPYAGTTTTCE---SLYMGVPCVTMA 792 (944)
Q Consensus 757 ~~~~~~~Di~Ld--~~~~~~~~t~~e---al~~gvPvvt~~ 792 (944)
+..+..||+++- .....-.-|..| |.+.|.|||.+.
T Consensus 76 ~~~i~~aD~vVA~ldg~~~D~GTa~EiGyA~algKPVv~l~ 116 (167)
T 1s2d_A 76 LTGISNATCGVFLYDMDQLDDGSAFXIGFMRAMHKPVILVP 116 (167)
T ss_dssp HHHHHHCSEEEEEEESSSCCHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHhCCEEEEECCCCCCCCCceeehhhHhhCCCeEEEEE
Confidence 445677998854 212233334454 788999999984
No 422
>3kxe_C Antitoxin protein PARD-1; complex, TA system, protein binding; 2.60A {Caulobacter crescentus NA1000}
Probab=20.09 E-value=1.7e+02 Score=23.60 Aligned_cols=52 Identities=19% Similarity=0.117 Sum_probs=36.6
Q ss_pred cCCHHHHHHHHHHHhcCHH-HHHHHHHHHHHHhhcCC--CCChHHHHHHHHHHHH
Q 002273 815 AKNEDEYVQLALQLASDVT-ALANLRMSLRDLMSKSP--VCDGQNFALGLESTYR 866 (944)
Q Consensus 815 ~~~~~~y~~~a~~l~~d~~-~~~~~r~~~~~~~~~~~--~~~~~~~~~~~e~~~~ 866 (944)
..|..+||.-++++....+ .+.+||+.+.+-....+ .+|.+.+...+.+-+.
T Consensus 27 Y~s~SEviR~~lR~l~~re~~l~~Lr~~l~~G~~Sg~~~~~d~d~v~a~~~~~~~ 81 (88)
T 3kxe_C 27 YGSASEVIRAGLRLLEENEAKLAALRAALIEGEESGFIEDFDFDAFIEERSRASA 81 (88)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCEESSCCHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHh
Confidence 5699999999999998765 46788888887665432 3677777766655433
No 423
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=20.03 E-value=1.1e+02 Score=31.12 Aligned_cols=67 Identities=15% Similarity=0.133 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHcCCCCCcEEEccCccCcHHHHHhcccccEEecCCCCCCcccHHHhhhcCCcEEecCC
Q 002273 726 VRHRFLSTLEQLGLESLRVDLLPLILLNHDHMQAYSLMDISLDTFPYAGTTTTCESLYMGVPCVTMAG 793 (944)
Q Consensus 726 ~~~~~~~~~~~~gi~~~rv~~~~~~~~~~~~~~~~~~~Di~Ld~~~~~~~~t~~eal~~gvPvvt~~g 793 (944)
...-+.+.+++.|-..-.=.|+|...... ....+..=|+++-+-|-.-+....||-.+|+|||++..
T Consensus 87 aq~aV~k~A~~tG~~yV~~RWlgGtLTN~-~t~~f~ePdllvV~Dp~~d~qAI~EA~~lnIPtIALvD 153 (305)
T 3iz6_A 87 GQRAVLKFAQYTGAHAIAGRHTPGTFTNQ-LQTSFSEPRLLILTDPRTDHQPIKESALGNIPTIAFCD 153 (305)
T ss_dssp HHHHHHHHHHHHTCEEECSCCCTTTTTTT-TTSCSSCCSEEEESCTTTTHHHHHHHHHHTCCEEEEEC
T ss_pred HHHHHHHHHHHhCCccccCcccCCcccCc-ccccccCCceeEEeCcccchHHHHHHHHcCCCEEEEEc
Confidence 34444555555554321123455443222 12335667887777788889999999999999998653
Done!