Query 002274
Match_columns 944
No_of_seqs 546 out of 2593
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 19:40:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002274.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002274hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bdl_A Staphylococcal nuclease 100.0 3.9E-88 1.3E-92 807.0 55.1 524 301-914 22-570 (570)
2 3bdl_A Staphylococcal nuclease 100.0 8.8E-48 3E-52 459.1 37.9 438 108-659 21-569 (570)
3 2hqx_A P100 CO-activator tudor 100.0 9.5E-44 3.2E-48 381.6 10.0 229 682-934 13-244 (246)
4 2wac_A CG7008-PA; unknown func 100.0 6E-41 2E-45 352.9 23.7 214 686-923 3-218 (218)
5 4b9w_A TDRD1, tudor domain-con 100.0 8.9E-36 3E-40 310.2 23.9 184 681-887 12-200 (201)
6 4b9x_A TDRD1, tudor domain-con 100.0 1.3E-35 4.3E-40 314.5 23.1 186 681-889 12-202 (226)
7 3ntk_A Maternal protein tudor; 100.0 3.3E-31 1.1E-35 268.2 16.8 164 686-878 2-166 (169)
8 4eqp_A Thermonuclease; staphyl 99.9 4.9E-24 1.7E-28 209.6 14.6 129 110-293 8-141 (143)
9 2diq_A Tudor and KH domain-con 99.9 3.9E-23 1.3E-27 194.3 8.4 98 709-814 10-107 (110)
10 3fdr_A Tudor and KH domain-con 99.9 2.5E-22 8.4E-27 183.5 10.5 90 709-806 5-94 (94)
11 4eqp_A Thermonuclease; staphyl 99.9 1.6E-21 5.6E-26 191.6 11.8 131 302-514 8-140 (143)
12 2eqk_A Tudor domain-containing 99.7 2.5E-18 8.4E-23 150.1 5.4 81 715-803 5-85 (85)
13 2d9t_A Tudor domain-containing 99.6 1.3E-15 4.3E-20 133.8 7.2 62 731-797 7-68 (78)
14 1mhn_A SurviVal motor neuron p 99.6 1.9E-15 6.3E-20 125.7 6.9 57 733-794 3-59 (59)
15 4a4f_A SurviVal of motor neuro 99.6 2.3E-15 7.7E-20 127.2 7.3 58 731-793 6-63 (64)
16 3s6w_A Tudor domain-containing 99.6 2.9E-15 9.7E-20 122.4 6.7 53 734-791 2-54 (54)
17 3pnw_C Tudor domain-containing 99.6 3.7E-15 1.3E-19 130.3 7.1 58 732-794 16-73 (77)
18 1g5v_A SurviVal motor neuron p 99.6 4.3E-15 1.5E-19 132.7 7.1 61 732-797 9-69 (88)
19 2wac_A CG7008-PA; unknown func 99.4 1.4E-12 4.7E-17 136.6 17.5 127 109-288 66-216 (218)
20 2equ_A PHD finger protein 20-l 99.2 2.1E-11 7.2E-16 105.3 7.6 58 731-796 7-64 (74)
21 2ldm_A Uncharacterized protein 98.6 1.8E-11 6.3E-16 106.7 0.0 55 732-794 5-59 (81)
22 2hqx_A P100 CO-activator tudor 99.0 5.7E-11 2E-15 126.9 3.5 104 563-668 127-232 (246)
23 3p8d_A Medulloblastoma antigen 98.3 8.8E-07 3E-11 74.5 6.5 55 732-794 5-59 (67)
24 3qii_A PHD finger protein 20; 98.3 9.5E-07 3.2E-11 77.3 6.4 56 731-794 19-74 (85)
25 4b9x_A TDRD1, tudor domain-con 97.8 0.00011 3.8E-09 77.1 12.7 90 544-636 96-200 (226)
26 4b9w_A TDRD1, tudor domain-con 97.8 0.00012 3.9E-09 75.6 11.3 90 543-635 95-199 (201)
27 2dig_A Lamin-B receptor; tudor 97.4 0.00052 1.8E-08 56.4 7.7 57 731-793 10-66 (68)
28 2l8d_A Lamin-B receptor; DNA b 97.2 0.00096 3.3E-08 54.8 7.2 56 731-792 7-62 (66)
29 3ntk_A Maternal protein tudor; 96.9 0.0027 9.2E-08 63.5 8.9 81 543-627 77-166 (169)
30 3h8z_A FragIle X mental retard 95.2 0.033 1.1E-06 52.9 6.8 100 684-794 14-120 (128)
31 2eqj_A Metal-response element- 93.8 0.16 5.4E-06 42.2 6.8 52 732-790 12-63 (66)
32 4hcz_A PHD finger protein 1; p 91.3 0.48 1.6E-05 38.2 6.4 53 733-792 3-55 (58)
33 2bud_A Males-absent on the fir 91.2 0.33 1.1E-05 43.2 5.9 59 736-795 17-77 (92)
34 2e5p_A Protein PHF1, PHD finge 91.2 0.5 1.7E-05 39.1 6.6 54 732-792 8-61 (68)
35 2ro0_A Histone acetyltransfera 90.9 0.47 1.6E-05 42.4 6.7 53 732-789 22-76 (92)
36 2lcc_A AT-rich interactive dom 90.9 0.29 9.9E-06 42.2 5.2 60 733-795 5-68 (76)
37 2f5k_A MORF-related gene 15 is 90.6 0.28 9.6E-06 44.7 5.1 57 732-793 21-79 (102)
38 2eko_A Histone acetyltransfera 90.5 0.39 1.3E-05 42.5 5.7 57 732-791 8-69 (87)
39 2e5q_A PHD finger protein 19; 89.8 0.66 2.3E-05 37.8 6.0 54 731-791 5-58 (63)
40 1ssf_A Transformation related 89.5 0.41 1.4E-05 46.2 5.4 49 734-789 9-57 (156)
41 1wgs_A MYST histone acetyltran 88.6 0.79 2.7E-05 43.8 6.7 56 732-789 11-68 (133)
42 2rnz_A Histone acetyltransfera 88.3 0.65 2.2E-05 41.6 5.5 53 732-789 24-78 (94)
43 2g3r_A Tumor suppressor P53-bi 82.6 2 6.9E-05 39.8 5.9 51 735-792 6-59 (123)
44 2m0o_A PHD finger protein 1; t 80.6 2.4 8.1E-05 36.1 5.2 52 732-790 25-76 (79)
45 2lrq_A Protein MRG15, NUA4 com 80.9 0.36 1.2E-05 42.5 0.0 57 732-793 11-69 (85)
46 2xk0_A Polycomb protein PCL; t 79.3 4.8 0.00016 33.6 6.5 52 732-792 14-65 (69)
47 3dlm_A Histone-lysine N-methyl 79.1 2.5 8.5E-05 43.2 5.8 70 733-807 8-78 (213)
48 3m9q_A Protein MALE-specific l 69.7 6.3 0.00022 35.7 5.4 62 732-793 18-86 (101)
49 2qqr_A JMJC domain-containing 69.1 6 0.0002 36.8 5.3 54 732-792 4-57 (118)
50 3mea_A SAGA-associated factor 63.5 8.2 0.00028 38.6 5.4 84 685-779 62-158 (180)
51 3h8z_A FragIle X mental retard 57.2 18 0.00062 34.1 6.3 47 739-793 7-54 (128)
52 3m9p_A MALE-specific lethal 3 56.7 12 0.0004 34.4 4.7 61 732-793 18-86 (110)
53 1ri0_A Hepatoma-derived growth 54.7 25 0.00085 32.2 6.6 63 731-794 17-79 (110)
54 2k3y_A Chromatin modification- 51.4 15 0.00053 34.9 4.7 59 733-793 9-104 (136)
55 2qqr_A JMJC domain-containing 48.3 24 0.00081 32.8 5.4 100 683-795 17-117 (118)
56 2xdp_A Lysine-specific demethy 47.6 21 0.00074 33.3 5.0 96 683-795 18-118 (123)
57 1mhn_A SurviVal motor neuron p 44.9 25 0.00087 28.2 4.5 39 301-344 18-57 (59)
58 2xdp_A Lysine-specific demethy 43.9 6.4 0.00022 36.9 0.8 50 732-788 5-54 (123)
59 3s6w_A Tudor domain-containing 43.7 22 0.00075 27.9 3.9 37 301-342 16-53 (54)
60 2eqm_A PHD finger protein 20-l 42.7 94 0.0032 27.2 8.1 56 731-792 17-76 (88)
61 3ask_A E3 ubiquitin-protein li 42.0 35 0.0012 35.3 6.1 61 734-794 3-69 (226)
62 3mea_A SAGA-associated factor 40.6 59 0.002 32.4 7.3 58 731-793 42-104 (180)
63 3mp6_A MBP, SGF29, maltose-bin 39.8 24 0.00081 40.8 5.1 85 684-777 404-495 (522)
64 2daq_A WHSC1L1 protein, isofor 39.2 41 0.0014 30.5 5.5 64 732-796 7-75 (110)
65 1g5v_A SurviVal motor neuron p 37.4 42 0.0014 29.4 5.0 39 301-344 25-64 (88)
66 2yrv_A AT-rich interactive dom 33.5 45 0.0015 30.8 4.7 95 735-829 12-112 (117)
67 3pnw_C Tudor domain-containing 32.7 40 0.0014 28.7 4.0 38 301-343 32-70 (77)
68 3qby_A Hepatoma-derived growth 32.6 44 0.0015 29.5 4.4 62 732-794 4-65 (94)
69 3mp6_A MBP, SGF29, maltose-bin 31.0 76 0.0026 36.4 7.4 80 709-793 360-451 (522)
70 1khc_A DNA cytosine-5 methyltr 30.5 73 0.0025 30.6 5.9 61 732-793 10-71 (147)
71 3db3_A E3 ubiquitin-protein li 29.8 81 0.0028 30.7 6.0 63 731-793 8-85 (161)
72 2d9t_A Tudor domain-containing 27.7 48 0.0017 28.2 3.7 39 301-344 24-63 (78)
73 3dlm_A Histone-lysine N-methyl 27.0 1.9E+02 0.0064 29.5 8.4 49 729-786 154-202 (213)
74 4a4f_A SurviVal of motor neuro 25.6 85 0.0029 25.5 4.7 38 301-343 23-61 (64)
75 3kdf_A Replication protein A 1 23.5 99 0.0034 28.7 5.3 40 101-141 14-56 (121)
76 3pmi_A PWWP domain-containing 22.2 94 0.0032 29.0 4.6 56 732-793 3-63 (134)
77 1h3z_A Hypothetical 62.8 kDa p 21.8 1.3E+02 0.0045 27.0 5.7 61 732-793 5-72 (109)
78 2l89_A PWWP domain-containing 21.3 86 0.003 28.3 4.3 60 733-793 5-69 (108)
No 1
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=100.00 E-value=3.9e-88 Score=807.03 Aligned_cols=524 Identities=37% Similarity=0.589 Sum_probs=449.3
Q ss_pred cceeEEEEEEEEeCCEEEEecCCCCCCCCCcceEEEEeeccCCCCCCCC-CCC-------CCchhHHHHHHHHHhhcCCc
Q 002274 301 DQNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKIGNPR-KDE-------KPAAYAREAREFLRTRLIGR 372 (944)
Q Consensus 301 ~~~~~~~V~~V~~gD~i~v~~~~~~~~~~~~~~~v~L~~i~~P~~~~~~-~~~-------~~~~~~~ea~e~Lr~~~~Gk 372 (944)
.+.++|+|++|+|||||+|...+ +.+++|||++|+||++.... ++. +++|||++||||||++|+||
T Consensus 22 ~~~~~~~V~~V~DGDTi~v~~~~------g~~~~VRL~gIdaPe~~~~~~~~~~~~~~~~~~~p~g~eA~e~L~~~l~gk 95 (570)
T 3bdl_A 22 DKQFVAKVMQVLNADAIVVKLNS------GDYKTIHLSSIRPPRLEGENTQDKNKKLRPLYDIPYMFEAREFLRKKLIGK 95 (570)
T ss_dssp CSEEEEEEEEEETTTEEEEECTT------SCEEEEEETTEECCCCTTSCCGGGTTTCCHHHHSTTHHHHHHHHHHHHTTC
T ss_pred CcEEEEEEEEEccCCEEEEECCC------CCEEEEEEEEEcCCCcCCCCCccccccccCcccchhHHHHHHHHHHHhCCC
Confidence 46899999999999999998533 24899999999999985321 111 47899999999999999999
Q ss_pred EEEEEEEEEeecccccccccccCCCCCCCCCCCCCcCccccCCCCCCcccCccccce-eeEEEEEecCCCCCCCCCchhh
Q 002274 373 QVNVQMEYSRKVVVEAAPVAAGAKGPAGTKGPAGTKGQAAAKGPAGEESVGATETRI-IDFGSIFLLSPIKGEGDDASAV 451 (944)
Q Consensus 373 ~v~v~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~ 451 (944)
+|+|.++|.++.... + +..+.++ |.+|+|++
T Consensus 96 ~V~~~~~~~~~~~~~--------------~--------------------~~~D~yg~R~la~v~~-------------- 127 (570)
T 3bdl_A 96 KVNVTVDYIRPASPA--------------T--------------------ETVPAFSERTCATVTI-------------- 127 (570)
T ss_dssp EEEEEEEEEESSCCC--------------S--------------------SCSSSSCCEEEEEEEE--------------
T ss_pred EEEEEEEeecccccc--------------c--------------------cccCCCCceEEEEEcc--------------
Confidence 999999998763210 0 1123356 99999998
Q ss_pred hhcccCCCCCCccHHHHHHhcCcEEEEEec-CccccchhHHHHHHHHHHHHHcCCCCCCCCCCCcceeeeCCcccccccc
Q 002274 452 AQSNAAGQPAGVNVAELVVSRGLGNVINHR-DFEERSNYYDALLAAEARAKAGKKGCYSSKEPPVMHIQDLTMAPVKKAR 530 (944)
Q Consensus 452 ~~~~~~~~~~~~nv~~~lv~~G~a~v~~~~-~~~~~s~~~~~l~~ae~~A~~~~~G~~~~~~~~~~~i~d~~~~~~~~ak 530 (944)
+|.|||++||++|||+|++|| ..++++.+|+.|++||++|+++++|||+.+++++.+++|++. +..+++
T Consensus 128 ---------~g~~v~~~lv~~G~A~v~~~~~~~~~~~~~~~~l~~aE~~A~~~~~GlW~~~~~~~~~~~d~~~-~~~~~~ 197 (570)
T 3bdl_A 128 ---------GGINIAEALVSKGLATVIRYRQDDDQRSSHYDELLAAEARAIKNGKGLHSKKEVPIHRVADISG-DTQKAK 197 (570)
T ss_dssp ---------TTEEHHHHHHHTTSSEECCCSSTTSCCCTTHHHHHHHHHHHHHTTCGGGCCSCCCCCCCEECTT-CHHHHH
T ss_pred ---------CCccHHHHHHhCcCEEEEeecCCccccChHHHHHHHHHHHHHHhCCCCCCCCCCCcceeeecCC-chHHHH
Confidence 578999999999999999987 555678899999999999999999999998878888999975 678999
Q ss_pred ccchhhhcCCcccEEEEEEecCCEEEEeecCCceeEEEEEeccCCCC----------CCCcchHHHHHHHHHHhcCceEE
Q 002274 531 DFLPFLQRSRRIPAVVEYVLSGHRFKVLIPKETCSIAFSFSGVRCPG----------RNERYSNEALLLMRQKILQRDVE 600 (944)
Q Consensus 531 ~fl~~l~~~~~~~~vVe~V~~G~~~kv~ip~e~~~I~~~LaGI~~P~----------~~e~w~~EA~~f~k~~llqR~V~ 600 (944)
+|+++++++++++|+|++|.|||||+|++|++++.++++|+||+||+ ..+||+.||+.|++++|++|+|+
T Consensus 198 ~~l~~~~~~~~~~~~V~~V~DGDT~~v~~~~~~~~~~vRL~GIdaPe~~~~~~~~~~~~~~~g~eA~~~l~~~l~~r~V~ 277 (570)
T 3bdl_A 198 QFLPFLQRAGRSEAVVEYVFSGSRLKLYLPKETCLITFLLAGIECPRGARNLPGLVQEGEPFSEEATLFTKELVLQREVE 277 (570)
T ss_dssp HHHHHHHHTCEEEEEEEEESSSSEEEEEETTTTEEEEEEESSEECCCCCEEETTEEECCCTTHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHhhCCeeeEEEEEEeCCCEEEEEEcCCCcEEEEEEEEEECCCCCCCCCCCccccChHHHHHHHHHHHHhcCCeEE
Confidence 99999999999999999999999999999989999999999999996 36899999999999999999999
Q ss_pred EEEEEECCCCcEEEEEEeCCccHHHHHHHcCCEEEeeccCCCCCCchHHHHHHHHHHHhhcccccccccccccccCC--c
Q 002274 601 IEVETVDRTGTFLGSLWESRTNVAVILLEAGLAKLQTSFGSDRIPDSHLLEQAEKSAKSQKLKIWENYVEGEEVSNG--A 678 (944)
Q Consensus 601 v~v~~~Dk~G~~ig~L~~~~~nIa~~Lv~~GLA~v~~~~s~~~~~~~~~L~~AE~~AK~~k~giW~~~~~~~~~~~~--~ 678 (944)
+++.+.|++|+++|+||+++.||+..||++|||+++ ++....++...|..||+.||++++|||+.+.|...+... .
T Consensus 278 ~~~~~~D~ygR~la~v~~~~~~v~~~Lv~~GlA~~~--~~~~~~~~~~~~~~aE~~Ak~~~~GlW~~~~~~~~~~~~~~~ 355 (570)
T 3bdl_A 278 VEVESMDKAGNFIGWLHIDGANLSVLLVEHALSKVH--FTAERSSYYKSLLSAEEAAKQKKEKVWAHYEEQPVEEVMPVL 355 (570)
T ss_dssp EEEEEECTTSCEEEEEEETTEEHHHHHHHTTSSEEC--GGGTTSTTHHHHHHHHHHHHHHTCGGGC----------CCCC
T ss_pred EEEEeEcCCCCEEEEEEECCEEHHHHHHHcCCcEEE--ecCCCcchHHHHHHHHHHHHHhCCCCCcccccccchhccccc
Confidence 999999999999999999999999999999999996 444455667889999999999999999988765321111 1
Q ss_pred cccCCCCcEEEEEEEEEecCCeEEEEEcCc-hhHHHHHHHHHHHHhcCCCCCCCCCCccCCeEEEEEcCCCceEEEEEEe
Q 002274 679 AVEGKQKEVLKVVVTEILGGGKFYVQQVGD-QKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVN 757 (944)
Q Consensus 679 ~~~~~~~~~~~V~VT~V~sp~~FyVQ~~~~-~~Le~L~~~L~~~~~~~~p~~~~~~p~~G~lcaA~fs~D~~WYRA~I~~ 757 (944)
....+..++++|+||+|.+|++||||..+. ..|+.||++|+.++.+..+.+.++.|++|++|+|+|+ |+.||||+|++
T Consensus 356 ~~~~~~~~~~~V~Vt~V~sp~~Fyvq~~~~~~~l~~l~~~l~~~~~~~~~l~~~~~~~~G~~c~a~~~-d~~wyRa~I~~ 434 (570)
T 3bdl_A 356 EEKERSASYKPVFVTEITDDLHFYVQDVETGTQLEKLMENMRNDIASHPPVEGSYAPRRGEFCIAKFV-DGEWYRARVEK 434 (570)
T ss_dssp CCSSCCCCCEEEEEEEECTTSEEEEEEGGGHHHHHHHHHHHHHHHHHSCCCTTCCCCCTTCEEEEECT-TSCEEEEEEEE
T ss_pred ccCCCCCcEEEEEEEEEECCCeEEEEECCcHHHHHHHHHHHHHHHhcCCCCCCCcCCCcCCEEEEEEC-CCCEEEEEEEE
Confidence 111245688999999999999999999984 6699999999998876656555678999999999998 99999999999
Q ss_pred eccCccccCCCEEEEEEeecCCeeeecCCCcccCCccccCc--ccccceeeecceecCCCCCCCcHHHHHHHhhccccCC
Q 002274 758 APREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSST--PPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSS 835 (944)
Q Consensus 758 v~~~~~~~~~~~v~V~fVDYGn~e~V~~s~Lr~Lp~~f~~l--P~qAi~c~LagV~p~~~~~~ws~eA~~~f~~lllv~g 835 (944)
+. ..+.+.|+||||||++.|+.++||+||++|+.+ |+||++|+|++|+||. +.+|+++|+++|++ ++.|
T Consensus 435 v~------~~~~~~V~fvDyGn~e~v~~~~Lr~l~~~f~~l~lP~qA~~c~La~v~pp~-~~~w~~ea~~~f~~--lv~~ 505 (570)
T 3bdl_A 435 VE------SPAKIHVFYIDYGNREVLPSTRLGTLSPAFSTRVLPAQATEYAFAFIQVPQ-DDDARTDAVDSVVR--DIQN 505 (570)
T ss_dssp EE------ETTEEEEEETTTCCEEEECGGGEECCCGGGSTTTSCCCCEEEEETTEECCS-SHHHHHHHHHHHHH--HHTT
T ss_pred Ec------CCCeEEEEEEeCCCeEEEEHHHCccCCHHHhcCCCCcceEEEEECCeEcCC-CCCCcHHHHHHHHH--HhCC
Confidence 95 468999999999999999999999999999876 9999999999999875 56899999999999 7789
Q ss_pred CEEEEEEEEEeCCCCcccCCCCccEEEEEEEecCCCCcHHHHHHHcCCeeEecccccCchhhHHHHHHHHHHHHHHHhh
Q 002274 836 NEFRALVEERDSSGGKLKGQGTGTLLHVTLVAVDAEISINTLMVQEGLARVERRKRWGSRDRQAALENLEKFQEEAKTA 914 (944)
Q Consensus 836 k~l~a~V~~~~~~g~~~~~~~~~~~~~VtL~d~~~~~sIn~~LV~~GlA~~~~~~~~~~~~~~~~~~~l~~aqe~Ak~~ 914 (944)
+.|.++|.+... +.++|+|+++++..+||+.||++|||..++++. +.+++++++|+++|+.||++
T Consensus 506 k~l~~~V~~~~~-----------~~~~V~L~~~~~~~sIn~~Lv~~G~A~~~~~~~---~~~~~~~~~l~~~q~~Ak~~ 570 (570)
T 3bdl_A 506 TQCLLNVEHLSA-----------GCPHVTLQFADSKGDVGLGLVKEGLVMVEVRKE---KQFQKVITEYLNAQESAKSA 570 (570)
T ss_dssp EEEEEEEEECCS-----------SSCEEEEEETTTCCBHHHHHHHTTSSEECCCCS---GGGHHHHHHHHHHHHTC---
T ss_pred CEEEEEEEEEeC-----------CcEEEEEEECCCCccHHHHHHHCCCeEcchhhh---hhHHHHHHHHHHHHHHHhcC
Confidence 999999998762 357899999877899999999999999996554 56799999999999999974
No 2
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=100.00 E-value=8.8e-48 Score=459.11 Aligned_cols=438 Identities=20% Similarity=0.274 Sum_probs=314.1
Q ss_pred cCCceeEEEEEEecCCEEEEEEcCCceEEEEEEeeecCCCCCCCCCccccCcccccCCCccccccccchhhHHHhhhhcc
Q 002274 108 KGRPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAASTA 187 (944)
Q Consensus 108 k~~~~~a~Ve~V~DGdt~~v~l~~~~~~~~v~laGI~~Pe~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 187 (944)
+.+.+.|+|.+|.|||||+|.. ..+...+|||+||||||+.+.... +...+ .
T Consensus 21 ~~~~~~~~V~~V~DGDTi~v~~-~~g~~~~VRL~gIdaPe~~~~~~~------~~~~~-----------------~---- 72 (570)
T 3bdl_A 21 MDKQFVAKVMQVLNADAIVVKL-NSGDYKTIHLSSIRPPRLEGENTQ------DKNKK-----------------L---- 72 (570)
T ss_dssp CCSEEEEEEEEEETTTEEEEEC-TTSCEEEEEETTEECCCCTTSCCG------GGTTT-----------------C----
T ss_pred CCcEEEEEEEEEccCCEEEEEC-CCCCEEEEEEEEEcCCCcCCCCCc------ccccc-----------------c----
Confidence 3567899999999999999963 456788999999999998542100 00000 0
Q ss_pred cCCCCCCCchhHHHHHHHHHHHhcCCeEEEEEe----------eccCCC-cEEEEEEecCCCCHHHHHHHHHHcCcEEEe
Q 002274 188 SAGQQSTDEPFALDAKYFTEMRVLNREVRIVLE----------GVDKFK-NLIGSVFYPDGETAKDLAMELVENGLAKYI 256 (944)
Q Consensus 188 ~~~~~~~~~p~g~eAk~f~e~~ll~r~V~v~~~----------~~D~~g-~~~~~V~~~~g~~~~di~~~Ll~~GlA~~~ 256 (944)
...+.+|||.||++|+..+|.++.|++.++ ..|+|| |++|+|+. +|.+ ||++||++|||+++
T Consensus 73 ---~~~~~~p~g~eA~e~L~~~l~gk~V~~~~~~~~~~~~~~~~~D~yg~R~la~v~~-~g~~---v~~~lv~~G~A~v~ 145 (570)
T 3bdl_A 73 ---RPLYDIPYMFEAREFLRKKLIGKKVNVTVDYIRPASPATETVPAFSERTCATVTI-GGIN---IAEALVSKGLATVI 145 (570)
T ss_dssp ---CHHHHSTTHHHHHHHHHHHHTTCEEEEEEEEEESSCCCSSCSSSSCCEEEEEEEE-TTEE---HHHHHHHTTSSEEC
T ss_pred ---cCcccchhHHHHHHHHHHHhCCCEEEEEEEeeccccccccccCCCCceEEEEEcc-CCcc---HHHHHHhCcCEEEE
Confidence 001358999999999999999999999997 469999 99999998 5554 99999999999997
Q ss_pred ec--ccccchHHHHHHHHHHHHHHHHhccccccccCCCCCCc-----c---c------c-ccceeEEEEEEEEeCCEEEE
Q 002274 257 EW--SANMMEEDAKRRLKAADLQAKKTRLRMWTNYVPPQSNS-----K---A------I-HDQNFTGKVVEVVSGDCIIV 319 (944)
Q Consensus 257 ~~--~~~~~~~~~~~~l~~aE~~Ak~~r~glW~~~~~~~~~~-----~---~------~-~~~~~~~~V~~V~~gD~i~v 319 (944)
.. ....-.. ....|.+||++||++++|||+...+|+... . + . ..+.+.|+|+.|+|||||.|
T Consensus 146 ~~~~~~~~~~~-~~~~l~~aE~~A~~~~~GlW~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~~~~~~~V~~V~DGDT~~v 224 (570)
T 3bdl_A 146 RYRQDDDQRSS-HYDELLAAEARAIKNGKGLHSKKEVPIHRVADISGDTQKAKQFLPFLQRAGRSEAVVEYVFSGSRLKL 224 (570)
T ss_dssp CCSSTTSCCCT-THHHHHHHHHHHHHTTCGGGCCSCCCCCCCEECTTCHHHHHHHHHHHHHTCEEEEEEEEESSSSEEEE
T ss_pred eecCCccccCh-HHHHHHHHHHHHHHhCCCCCCCCCCCcceeeecCCchHHHHHHHHHHhhCCeeeEEEEEEeCCCEEEE
Confidence 52 1101111 225899999999999999998755443211 0 1 1 25779999999999999999
Q ss_pred ecCCCCCCCCCcceEEEEeeccCCCCCCCCCC--CCCchhHHHHHHHHHhhcCCcEEEEEEEEEeecccccccccccCCC
Q 002274 320 ADDSIPYGNALAERRVNLSSIRCPKIGNPRKD--EKPAAYAREAREFLRTRLIGRQVNVQMEYSRKVVVEAAPVAAGAKG 397 (944)
Q Consensus 320 ~~~~~~~~~~~~~~~v~L~~i~~P~~~~~~~~--~~~~~~~~ea~e~Lr~~~~Gk~v~v~~~y~~~~~~~~~~~~~~~~~ 397 (944)
..+.. +...+|||++|+||+...+..+ .+.+|||.+|++||+++|.|+.|.|.++..
T Consensus 225 ~~~~~-----~~~~~vRL~GIdaPe~~~~~~~~~~~~~~~g~eA~~~l~~~l~~r~V~~~~~~~---------------- 283 (570)
T 3bdl_A 225 YLPKE-----TCLITFLLAGIECPRGARNLPGLVQEGEPFSEEATLFTKELVLQREVEVEVESM---------------- 283 (570)
T ss_dssp EETTT-----TEEEEEEESSEECCCCCEEETTEEECCCTTHHHHHHHHHHHHTTCEEEEEEEEE----------------
T ss_pred EEcCC-----CcEEEEEEEEEECCCCCCCCCCCccccChHHHHHHHHHHHHhcCCeEEEEEEeE----------------
Confidence 86321 1368999999999997642111 247899999999999999999999998643
Q ss_pred CCCCCCCCCCcCccccCCCCCCcccCccccceeeEEEEEecCCCCCCCCCchhhhhcccCCCCCCccHHHHHHhcCcEEE
Q 002274 398 PAGTKGPAGTKGQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQPAGVNVAELVVSRGLGNV 477 (944)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~nv~~~lv~~G~a~v 477 (944)
|.| +|.+|+|++ +|.|||+.||++|||++
T Consensus 284 ----D~y------------------------gR~la~v~~-----------------------~~~~v~~~Lv~~GlA~~ 312 (570)
T 3bdl_A 284 ----DKA------------------------GNFIGWLHI-----------------------DGANLSVLLVEHALSKV 312 (570)
T ss_dssp ----CTT------------------------SCEEEEEEE-----------------------TTEEHHHHHHHTTSSEE
T ss_pred ----cCC------------------------CCEEEEEEE-----------------------CCEEHHHHHHHcCCcEE
Confidence 443 589999998 47899999999999999
Q ss_pred EEecCccccchhHHHHHHHHHHHHHcCCCCCCCCCCCc-------------------ceeeeCCccc------cccc---
Q 002274 478 INHRDFEERSNYYDALLAAEARAKAGKKGCYSSKEPPV-------------------MHIQDLTMAP------VKKA--- 529 (944)
Q Consensus 478 ~~~~~~~~~s~~~~~l~~ae~~A~~~~~G~~~~~~~~~-------------------~~i~d~~~~~------~~~a--- 529 (944)
+ +. ..+..++..|.+||+.||++++|||+...++. ..|..+...+ ....
T Consensus 313 ~-~~--~~~~~~~~~~~~aE~~Ak~~~~GlW~~~~~~~~~~~~~~~~~~~~~~~~~~V~Vt~V~sp~~Fyvq~~~~~~~l 389 (570)
T 3bdl_A 313 H-FT--AERSSYYKSLLSAEEAAKQKKEKVWAHYEEQPVEEVMPVLEEKERSASYKPVFVTEITDDLHFYVQDVETGTQL 389 (570)
T ss_dssp C-GG--GTTSTTHHHHHHHHHHHHHHTCGGGC----------CCCCCCSSCCCCCEEEEEEEECTTSEEEEEEGGGHHHH
T ss_pred E-ec--CCCcchHHHHHHHHHHHHHhCCCCCcccccccchhcccccccCCCCCcEEEEEEEEEECCCeEEEEECCcHHHH
Confidence 7 22 23356788999999999999999998643320 0111111000 0000
Q ss_pred c-------ccch-------------------hhhcCCcccEEEEEEecCCEEEEee-----------------cC-----
Q 002274 530 R-------DFLP-------------------FLQRSRRIPAVVEYVLSGHRFKVLI-----------------PK----- 561 (944)
Q Consensus 530 k-------~fl~-------------------~l~~~~~~~~vVe~V~~G~~~kv~i-----------------p~----- 561 (944)
. .++. .+..+.=+.|.|..|.+.+++.|++ |.
T Consensus 390 ~~l~~~l~~~~~~~~~l~~~~~~~~G~~c~a~~~d~~wyRa~I~~v~~~~~~~V~fvDyGn~e~v~~~~Lr~l~~~f~~l 469 (570)
T 3bdl_A 390 EKLMENMRNDIASHPPVEGSYAPRRGEFCIAKFVDGEWYRARVEKVESPAKIHVFYIDYGNREVLPSTRLGTLSPAFSTR 469 (570)
T ss_dssp HHHHHHHHHHHHHSCCCTTCCCCCTTCEEEEECTTSCEEEEEEEEEEETTEEEEEETTTCCEEEECGGGEECCCGGGSTT
T ss_pred HHHHHHHHHHHhcCCCCCCCcCCCcCCEEEEEECCCCEEEEEEEEEcCCCeEEEEEEeCCCeEEEEHHHCccCCHHHhcC
Confidence 0 0000 0101222456777666656666642 21
Q ss_pred --CceeEEEEEeccCCCCCCCcchHHHHHHHHHHhcCceEEEEEEEECCCCcEEEEEEeC--CccHHHHHHHcCCEEEee
Q 002274 562 --ETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWES--RTNVAVILLEAGLAKLQT 637 (944)
Q Consensus 562 --e~~~I~~~LaGI~~P~~~e~w~~EA~~f~k~~llqR~V~v~v~~~Dk~G~~ig~L~~~--~~nIa~~Lv~~GLA~v~~ 637 (944)
..+++.|+|+||.+|. +..|+.+|..+|++++.++.+.+.|...+ .|.+++.|+.. +.+|+..||++|||....
T Consensus 470 ~lP~qA~~c~La~v~pp~-~~~w~~ea~~~f~~lv~~k~l~~~V~~~~-~~~~~V~L~~~~~~~sIn~~Lv~~G~A~~~~ 547 (570)
T 3bdl_A 470 VLPAQATEYAFAFIQVPQ-DDDARTDAVDSVVRDIQNTQCLLNVEHLS-AGCPHVTLQFADSKGDVGLGLVKEGLVMVEV 547 (570)
T ss_dssp TSCCCCEEEEETTEECCS-SHHHHHHHHHHHHHHHTTEEEEEEEEECC-SSSCEEEEEETTTCCBHHHHHHHTTSSEECC
T ss_pred CCCcceEEEEECCeEcCC-CCCCcHHHHHHHHHHhCCCEEEEEEEEEe-CCcEEEEEEECCCCccHHHHHHHCCCeEcch
Confidence 3578999999999876 66899999999999999999999999887 57788899875 688999999999998842
Q ss_pred ccCCCC-CCchHHHHHHHHHHHh
Q 002274 638 SFGSDR-IPDSHLLEQAEKSAKS 659 (944)
Q Consensus 638 ~~s~~~-~~~~~~L~~AE~~AK~ 659 (944)
. .... ......|+++|+.||+
T Consensus 548 ~-~~~~~~~~~~~l~~~q~~Ak~ 569 (570)
T 3bdl_A 548 R-KEKQFQKVITEYLNAQESAKS 569 (570)
T ss_dssp C-CSGGGHHHHHHHHHHHHTC--
T ss_pred h-hhhhHHHHHHHHHHHHHHHhc
Confidence 1 1111 1123667778877764
No 3
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=100.00 E-value=9.5e-44 Score=381.64 Aligned_cols=229 Identities=31% Similarity=0.519 Sum_probs=78.9
Q ss_pred CCCCcEEEEEEEEEecCCeEEEEEcC-chhHHHHHHHHHHHHhcCCCCCCCCCCccCCeEEEEEcCCCceEEEEEEeecc
Q 002274 682 GKQKEVLKVVVTEILGGGKFYVQQVG-DQKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVNAPR 760 (944)
Q Consensus 682 ~~~~~~~~V~VT~V~sp~~FyVQ~~~-~~~Le~L~~~L~~~~~~~~p~~~~~~p~~G~lcaA~fs~D~~WYRA~I~~v~~ 760 (944)
.+.+++++|+||+|.+|++||||..+ ...|+.||++|+.++.+..+.+..+.|++|++|+|+|+ |+.||||+|+++.
T Consensus 13 ~~~~~~~~V~Vt~v~~p~~f~vq~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~G~~c~a~~~-d~~wyRa~V~~~~- 90 (246)
T 2hqx_A 13 ERSASYKPVFVTEITDDLHFYVQDVETGTQFQKLMENMRNDIASHPPVEGSYAPRRGEFCIAKFV-DGEWYRARVEKVE- 90 (246)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHHSCCCTTTCCCCTTCEEEEECT-TSCEEEEEEEEEE-
T ss_pred CCCCCEEEEEEEEECCCCEEEEEECCcHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCCEEEEEcC-CCCEEEEEEEEEc-
Confidence 35688999999999999999999988 46799999999998876555545678999999999998 9999999999985
Q ss_pred CccccCCCEEEEEEeecCCeeeecCCCcccCCcccc--CcccccceeeecceecCCCCCCCcHHHHHHHhhccccCCCEE
Q 002274 761 EKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLS--STPPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSNEF 838 (944)
Q Consensus 761 ~~~~~~~~~v~V~fVDYGn~e~V~~s~Lr~Lp~~f~--~lP~qAi~c~LagV~p~~~~~~ws~eA~~~f~~lllv~gk~l 838 (944)
.++.+.|+||||||++.|+.++||+||++|. .||+||++|+|++|+||.. .+|..+|..+|.+ ++.|+.+
T Consensus 91 -----~~~~~~V~~vDyGn~~~v~~~~lr~l~~~~~~~~lp~~a~~~~L~~v~~p~~-~~~~~eA~~~l~~--lv~~k~v 162 (246)
T 2hqx_A 91 -----SPAKIHVFYIDYGNREVLPSTRLGTLSPAFSTRVLPAQATEYAFAFIQVPQD-DDARTDAVDSVVR--DIQNTQC 162 (246)
T ss_dssp -----ETTEEEEEETTTCCEEEECGGGEECCCGGGSTTTSCCCC------------------------------------
T ss_pred -----CCCeEEEEEEeCCCeEEEeHHHhhcCCHhHcCCCCchhhhhhhhhceecCCC-ccchHHHHHHHHH--HhcCCEE
Confidence 4579999999999999999999999999998 7899999999999998853 5799999999999 6789999
Q ss_pred EEEEEEEeCCCCcccCCCCccEEEEEEEecCCCCcHHHHHHHcCCeeEecccccCchhhHHHHHHHHHHHHHHHhhcccc
Q 002274 839 RALVEERDSSGGKLKGQGTGTLLHVTLVAVDAEISINTLMVQEGLARVERRKRWGSRDRQAALENLEKFQEEAKTARIGM 918 (944)
Q Consensus 839 ~a~V~~~~~~g~~~~~~~~~~~~~VtL~d~~~~~sIn~~LV~~GlA~~~~~~~~~~~~~~~~~~~l~~aqe~Ak~~r~gi 918 (944)
.++|...+. +..+|+|++.+...+||++||++|||.+.++.. ....+..+.|+++|+.||++|+||
T Consensus 163 ~~~v~~~d~-----------g~~~v~L~~~~~~~~In~~LV~~GlA~~~~~~~---~~~~~~~~~~~~~e~~Ar~~r~Gl 228 (246)
T 2hqx_A 163 LLNVEHLSA-----------GCPHVTLQFADSKGDVGLGLVKEGLVMVEVRKE---KQFQKVITEYLNAQESAKSARLNL 228 (246)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEEEecC-----------CeEEEEEEeCCCCccHHHHHHHCCCEEecccch---hhHHHHHHHHHHHHHHHHHhccCc
Confidence 999887652 246678887556789999999999999986432 234567889999999999999999
Q ss_pred cccCCCCCCCCCCCcc
Q 002274 919 WQYGDIQSDDEDPLPS 934 (944)
Q Consensus 919 W~yGD~~~dde~~~~~ 934 (944)
|+|||+++|||+|||.
T Consensus 229 W~~gd~~~dd~~~~~~ 244 (246)
T 2hqx_A 229 WRYGDFRADDADEFGY 244 (246)
T ss_dssp ----------------
T ss_pred ccCCCCCcccccccCC
Confidence 9999999999999986
No 4
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=100.00 E-value=6e-41 Score=352.94 Aligned_cols=214 Identities=31% Similarity=0.521 Sum_probs=189.8
Q ss_pred cEEEEEEEEEecCCeEEEEEcCc-hhHHHHHHHHHHHHhcCCCCCCCCCCccCCeEEEEEcCCCceEEEEEEeeccCccc
Q 002274 686 EVLKVVVTEILGGGKFYVQQVGD-QKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVNAPREKVE 764 (944)
Q Consensus 686 ~~~~V~VT~V~sp~~FyVQ~~~~-~~Le~L~~~L~~~~~~~~p~~~~~~p~~G~lcaA~fs~D~~WYRA~I~~v~~~~~~ 764 (944)
++++|+||+|.||++||||..+. ..|+.||++|+.++.+..+.+.++.|++|++|+|+|++|+.||||+|+++.
T Consensus 3 ~~~~V~Vt~v~~p~~f~vq~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~g~~c~a~~~~d~~wyRa~V~~v~----- 77 (218)
T 2wac_A 3 NYENVIVTEITETLTFFAQSVESGSKLESLMSKLHADFQSNPPIAGSYTPKRGDLVAAQFTLDNQWYRAKVERVQ----- 77 (218)
T ss_dssp CCEEEEEEEECTTSEEEEEEGGGHHHHHHHHHHHHHHHHHSCCCTTSCCCCTTCEEEEECTTTCCEEEEEEEEEE-----
T ss_pred ceEEEEEEEEcCCCEEEEEECCCHHHHHHHHHHHHHHHhhCCCCCCCccCCcCCEEEEEECCCCeEEEEEEEEec-----
Confidence 57899999999999999999984 569999999999887655555557899999999999999999999999984
Q ss_pred cCCCEEEEEEeecCCeeeecCCCcccCCccccCcccccceeeecceecCCCCCCCcHHHHHHHhhccccCCCEEEEEEEE
Q 002274 765 SVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSNEFRALVEE 844 (944)
Q Consensus 765 ~~~~~v~V~fVDYGn~e~V~~s~Lr~Lp~~f~~lP~qAi~c~LagV~p~~~~~~ws~eA~~~f~~lllv~gk~l~a~V~~ 844 (944)
++.+.|+||||||++.|+.++||+||++|..+|+||++|+|++|+||. +..|+.+|+++|++ ++.|+.+.++|..
T Consensus 78 --~~~~~V~~vDyG~~~~v~~~~l~~l~~~~~~~p~~a~~~~Lagv~~p~-~~~w~~eA~~~l~~--lv~~k~v~~~v~~ 152 (218)
T 2wac_A 78 --GSNATVLYIDYGNKETLPTNRLAALPPAFSSEKPYATEYALALVALPT-DNEDKEEALRAFSE--DVLNHKVQLNVEL 152 (218)
T ss_dssp --TTEEEEEETTTCCEEEEEGGGEEECCGGGSSSCCSEEEEEETTEECCS-SHHHHHHHHHHHHH--HHBTCEEEEEEEE
T ss_pred --CCeEEEEEEecCCeEEEchHHcccCChhhccCCcceeEEEECCEECCC-CcchHHHHHHHHHH--HhcCCEEEEEEEE
Confidence 489999999999999999999999999999999999999999999885 46799999999999 7789999999998
Q ss_pred EeCCCCcccCCCCccE-EEEEEEecCCCCcHHHHHHHcCCeeEecccccCchhhHHHHHHHHHHHHHHHhhcccccccCC
Q 002274 845 RDSSGGKLKGQGTGTL-LHVTLVAVDAEISINTLMVQEGLARVERRKRWGSRDRQAALENLEKFQEEAKTARIGMWQYGD 923 (944)
Q Consensus 845 ~~~~g~~~~~~~~~~~-~~VtL~d~~~~~sIn~~LV~~GlA~~~~~~~~~~~~~~~~~~~l~~aqe~Ak~~r~giW~yGD 923 (944)
.+ . +. ++|+|++.+++.+||+.||++|||.+.++.. ....+..++|+++|+.||++|+|||+|||
T Consensus 153 ~d-~----------g~~~~V~L~~~~~~~~in~~Lv~~G~A~~~~~~~---~~~~~~~~~~~~~e~~Ar~~r~GlW~~gd 218 (218)
T 2wac_A 153 KV-T----------GSPNLATLRDPTTKVDFGKQLVAEGLVLAEQRGE---RKLKELVDQYKAAQEAARVAHLAIWKYGD 218 (218)
T ss_dssp CC-T----------TSCEEEEEECTTTCCBHHHHHHHTTSSEECCCCC---GGGHHHHHHHHHHHHHHHHTTCGGGTTC-
T ss_pred Ec-C----------CceEEEEEEeCCCCccHHHHHHHCCCcccccccc---hhHHHHHHHHHHHHHHHHHhcCCCcccCC
Confidence 65 2 24 7899998766889999999999999974432 23467889999999999999999999998
No 5
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=100.00 E-value=8.9e-36 Score=310.19 Aligned_cols=184 Identities=27% Similarity=0.379 Sum_probs=164.4
Q ss_pred cCCCCcEEEEEEEEEecCCeEEEEEcCc---hhHHHHHHHHHHHHhcCCCCCCCCCCccCCeEEEEEcCCCceEEEEEEe
Q 002274 681 EGKQKEVLKVVVTEILGGGKFYVQQVGD---QKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVN 757 (944)
Q Consensus 681 ~~~~~~~~~V~VT~V~sp~~FyVQ~~~~---~~Le~L~~~L~~~~~~~~p~~~~~~p~~G~lcaA~fs~D~~WYRA~I~~ 757 (944)
+++.+++++|+||||.||++||||+.++ ..|+.||++|+.+|.+..+. ...|++|++|+|+|++|+.||||+|++
T Consensus 12 ~l~~~~~~~V~Vt~v~sP~~Fyvq~~~~~~~~~l~~L~~~l~~~~~~~~~~--~~~~~~G~~c~a~~~~d~~wyRa~V~~ 89 (201)
T 4b9w_A 12 EFTVDETVDVVVCMMYSPGEFYCHFLKDDALEKLDDLNQSLADYCAQKPPN--GFKAEIGRPCCAFFSGDGNWYRALVKE 89 (201)
T ss_dssp CCCTTCEEEEEEEEEEETTEEEEEECCTTHHHHHHHHHHHHHHHHHSSSCC--CCCCCTTCEEEEEETTTTEEEEEEEEE
T ss_pred EcCCCCEEEEEEEEEeCCCEEEEEECCCchHHHHHHHHHHHHHHHhcCCCC--CCCCCCCCEEEEEECCCCeEEEEEEEE
Confidence 4567899999999999999999999763 57999999999998765433 467999999999999999999999999
Q ss_pred eccCccccCCCEEEEEEeecCCeeeecCCCcccCCccccCcccccceeeecceecCCCCCCCcHHHHHHHhhccccCCCE
Q 002274 758 APREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSNE 837 (944)
Q Consensus 758 v~~~~~~~~~~~v~V~fVDYGn~e~V~~s~Lr~Lp~~f~~lP~qAi~c~LagV~p~~~~~~ws~eA~~~f~~lllv~gk~ 837 (944)
+. +++.++|+||||||++.|+.++||+||++|+.+|+||++|+|++|+|+ +.+|+++|+++|++ ++.++.
T Consensus 90 ~~------~~~~~~V~~vDyG~~~~v~~~~l~~l~~~f~~lP~qA~~c~L~~v~p~--~~~w~~ea~~~f~~--l~~~k~ 159 (201)
T 4b9w_A 90 IL------PSGNVKVHFVDYGNVEEVTTDQLQAILPQFLLLPFQGMQCWLVDIQPP--NKHWTKEATARFQA--CVVGLK 159 (201)
T ss_dssp EC------TTSCEEEEETTTCCEEEECGGGEEECCGGGGSSCBCCEEEEESSEECS--SSSCCHHHHHHHHH--HHTTCC
T ss_pred EC------CCCeEEEEEEccCCEEEEEHHHhccChHhHcccchhhEEEEEcCEEcC--CCCCCHHHHHHHHH--HHCCCE
Confidence 85 567899999999999999999999999999999999999999999998 56899999999999 788999
Q ss_pred EEEEEEEEeCCCCcccCCCCccEEEEEEEecC--CCCcHHHHHHHcCCeeEe
Q 002274 838 FRALVEERDSSGGKLKGQGTGTLLHVTLVAVD--AEISINTLMVQEGLARVE 887 (944)
Q Consensus 838 l~a~V~~~~~~g~~~~~~~~~~~~~VtL~d~~--~~~sIn~~LV~~GlA~~~ 887 (944)
|.++|..... +.+.|+|++.+ .+.+||+.||++|||..+
T Consensus 160 l~~~V~~~~~-----------~~~~V~L~d~~~~~~~~I~~~Lv~~gLA~kc 200 (201)
T 4b9w_A 160 LQARVVEITA-----------NGVGVELTDLSTPYPKIISDVLIREQLVLRC 200 (201)
T ss_dssp EEEEEEEEET-----------TEEEEEEEECSSSSCEEHHHHHHHTTSSEEC
T ss_pred EEEEEEEEeC-----------CEEEEEEEECCCCCccchHHHHHHCcCeecc
Confidence 9999998763 34789999864 367899999999999754
No 6
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=100.00 E-value=1.3e-35 Score=314.49 Aligned_cols=186 Identities=26% Similarity=0.374 Sum_probs=164.8
Q ss_pred cCCCCcEEEEEEEEEecCCeEEEEEcCc---hhHHHHHHHHHHHHhcCCCCCCCCCCccCCeEEEEEcCCCceEEEEEEe
Q 002274 681 EGKQKEVLKVVVTEILGGGKFYVQQVGD---QKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVN 757 (944)
Q Consensus 681 ~~~~~~~~~V~VT~V~sp~~FyVQ~~~~---~~Le~L~~~L~~~~~~~~p~~~~~~p~~G~lcaA~fs~D~~WYRA~I~~ 757 (944)
+++.+++++|+||+|.||++||||+.++ ..|+.||++|+.+|.+..+. ...|++|++|+|+|++|+.||||+|++
T Consensus 12 ~l~~~~~~~V~Vt~v~sP~~Fyvq~~~~~~~~~L~~L~~~l~~~~~~~~~~--~~~~~~G~~c~a~~~~d~~WyRa~V~~ 89 (226)
T 4b9x_A 12 EFTVDETVDVVVCMMYSPGEFYCHFLKDDALEKLDDLNQSLADYCAQKPPN--GFKAEIGRPCCAFFSGDGNWYRALVKE 89 (226)
T ss_dssp CCCTTCEEEEEEEEEEETTEEEEEECCTTHHHHHHHHHHHHHHHTSSSCC----CCCCTTCEEEEEETTTTEEEEEEEEE
T ss_pred EcCCCCEEEEEEEEEeCCCEEEEEEcCCchHHHHHHHHHHHHHHHhcCCCC--CCCCCCCCEEEEEECCCCeEEEEEEEE
Confidence 4567899999999999999999999763 57999999999998764433 467999999999999999999999999
Q ss_pred eccCccccCCCEEEEEEeecCCeeeecCCCcccCCccccCcccccceeeecceecCCCCCCCcHHHHHHHhhccccCCCE
Q 002274 758 APREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSNE 837 (944)
Q Consensus 758 v~~~~~~~~~~~v~V~fVDYGn~e~V~~s~Lr~Lp~~f~~lP~qAi~c~LagV~p~~~~~~ws~eA~~~f~~lllv~gk~ 837 (944)
+. .++.++|+||||||++.|+.++||+||++|+.+|+||++|+|++|+|+ +.+|+.+|+++|++ ++.|+.
T Consensus 90 ~~------~~~~~~V~~vDyGn~~~v~~~~l~~l~~~f~~lP~qA~~c~L~~v~p~--~~~w~~ea~~~f~~--l~~~k~ 159 (226)
T 4b9x_A 90 IL------PSGNVKVHFVDYGNVEEVTTDQLQAILPQFLLLPFQGMQCWLVDIQPP--NKHWTKEATARFQA--CVVGLK 159 (226)
T ss_dssp EC------SSSEEEEECTTTCCEEEEEGGGEECCCGGGSSSCBCCEEEEESSEECS--SSSCCHHHHHHHHH--HHTTCC
T ss_pred EC------CCCeEEEEEEecCCEEEEEHHHhccChHHHcccccceEEEEEecEECC--CCCCCHHHHHHHHH--HHCCCe
Confidence 85 567899999999999999999999999999999999999999999998 56899999999999 789999
Q ss_pred EEEEEEEEeCCCCcccCCCCccEEEEEEEecC--CCCcHHHHHHHcCCeeEecc
Q 002274 838 FRALVEERDSSGGKLKGQGTGTLLHVTLVAVD--AEISINTLMVQEGLARVERR 889 (944)
Q Consensus 838 l~a~V~~~~~~g~~~~~~~~~~~~~VtL~d~~--~~~sIn~~LV~~GlA~~~~~ 889 (944)
|.|+|.....+ .++|+|+|.+ .+.+||+.||++|||.....
T Consensus 160 l~~~V~~~~~~-----------~~~V~L~d~~~~~~~~I~~~Lv~~gla~~~~~ 202 (226)
T 4b9x_A 160 LQARVVEITAN-----------GVGVELTDLSTPYPKIISDVLIREQLVLRCGS 202 (226)
T ss_dssp EEEEEEEECSS-----------CEEEEEEECSSSSCEEHHHHHHHTTSSEECC-
T ss_pred EEEEEEEEeCC-----------eEEEEEEECCCCCCccHHHHHHHCCCccccCC
Confidence 99999988642 4789999864 36789999999999987653
No 7
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=99.97 E-value=3.3e-31 Score=268.21 Aligned_cols=164 Identities=22% Similarity=0.308 Sum_probs=142.7
Q ss_pred cEEEEEEEEEecCCeEEEEEcCc-hhHHHHHHHHHHHHhcCCCCCCCCCCccCCeEEEEEcCCCceEEEEEEeeccCccc
Q 002274 686 EVLKVVVTEILGGGKFYVQQVGD-QKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVNAPREKVE 764 (944)
Q Consensus 686 ~~~~V~VT~V~sp~~FyVQ~~~~-~~Le~L~~~L~~~~~~~~p~~~~~~p~~G~lcaA~fs~D~~WYRA~I~~v~~~~~~ 764 (944)
++++|+||||.||++||||..+. ..|+.||++|+.++...++ ...|++|++|+|+|++|+.||||+|+++.
T Consensus 2 e~~~V~Vt~v~~p~~F~vq~~~~~~~L~~L~~~l~~~~~~~p~---~~~~~~G~~c~A~~~~d~~wyRa~I~~~~----- 73 (169)
T 3ntk_A 2 ELHNCVVVQFDGPMSFYVQMESDVPALEQMTDKLLDAEQDLPA---FSDLKEGALCVAQFPEDEVFYRAQIRKVL----- 73 (169)
T ss_dssp CCEEEEEEEEEETTEEEEEEGGGHHHHHHHHHHHHHHGGGCCB---CCCCCTTCEEEEEETTTTEEEEEEEEEEC-----
T ss_pred cceEEEEEEEeCCCEEEEEECCCHHHHHHHHHHHHHHHhcCCC---CCCCCCCCEEEEEECCCCcEEEEEEEEEC-----
Confidence 46899999999999999999874 7899999999998753222 25799999999999999999999999995
Q ss_pred cCCCEEEEEEeecCCeeeecCCCcccCCccccCcccccceeeecceecCCCCCCCcHHHHHHHhhccccCCCEEEEEEEE
Q 002274 765 SVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSSTPPLAQLCSLAYIKIPALEDEYGPEAAEFLNEHTYNSSNEFRALVEE 844 (944)
Q Consensus 765 ~~~~~v~V~fVDYGn~e~V~~s~Lr~Lp~~f~~lP~qAi~c~LagV~p~~~~~~ws~eA~~~f~~lllv~gk~l~a~V~~ 844 (944)
.++.+.|+||||||++. .++||+||++|.++|+||++|+|++|+|+. ++.+|..+|.+ ++.|+.|.++|.+
T Consensus 74 -~~~~~~V~fvDyGn~~~--v~~lr~l~~~f~~lP~qA~~c~L~~v~~~~----~~~ea~~~f~~--l~~~k~l~~~V~~ 144 (169)
T 3ntk_A 74 -DDGKCEVHFIDFGNNAV--TQQFRQLPEELAKPARYSRHCELDASTISK----CDAALLQSFID--TRFSETFQVEILA 144 (169)
T ss_dssp -STTCEEEEETTTTEEEE--ESCEECCCHHHHSSCCSSEEEEECGGGSCH----HHHHHHHHHHH--TTTTSEEEEEEEE
T ss_pred -CCCEEEEEEEecCCeEE--hhhhhccCHHHhhCCceeEEEEECCcCCCC----ChHHHHHHHHH--HhCCCeEEEEEEE
Confidence 45689999999999999 489999999999999999999999999984 28999999999 8899999999998
Q ss_pred EeCCCCcccCCCCccEEEEEEEecCCCCcHHHHH
Q 002274 845 RDSSGGKLKGQGTGTLLHVTLVAVDAEISINTLM 878 (944)
Q Consensus 845 ~~~~g~~~~~~~~~~~~~VtL~d~~~~~sIn~~L 878 (944)
+.. +..+.|+|+++ +.+||+.|
T Consensus 145 ~~~----------~~~~~V~L~~~--~~~in~~L 166 (169)
T 3ntk_A 145 TKG----------TGTHVVRLFYQ--SKNISEKL 166 (169)
T ss_dssp ECT----------TSCEEEEEEET--TEEHHHHC
T ss_pred ecC----------CCCEEEEEEEC--CCCHHHHh
Confidence 753 22344999985 56999986
No 8
>4eqp_A Thermonuclease; staphylococcal nuclease, hyperstable, PDTP, ionizable group, hydrolase; HET: THP; 1.35A {Staphylococcus aureus} PDB: 3ero_A* 2rbm_A* 3d8g_A* 3bdc_A* 4f8m_A* 3lx0_A* 3nqt_A* 3nk9_A* 3pmf_A* 3sr1_A* 3t13_A* 3mxp_A* 3r3o_A* 4df7_A* 3np8_A* 3nxw_A* 3oso_A* 3mz5_A* 3mhb_A* 3dhq_A* ...
Probab=99.91 E-value=4.9e-24 Score=209.56 Aligned_cols=129 Identities=23% Similarity=0.360 Sum_probs=105.2
Q ss_pred CceeEEEEEEecCCEEEEEEcCCceEEEEEEeeecCCCCCCCCCccccCcccccCCCccccccccchhhHHHhhhhcccC
Q 002274 110 RPMQGIVEQARDGSTLRVYLLPEFQFVQVFVAGIQAPAVARRPAAIVDTDTEETNGDVSAAEAVAPLNSAQRLAASTASA 189 (944)
Q Consensus 110 ~~~~a~Ve~V~DGdt~~v~l~~~~~~~~v~laGI~~Pe~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 189 (944)
...+|+|.+|+|||||+|.. .++.++|||+||||||+.
T Consensus 8 ~~~~~~V~~V~DGDTi~v~~--~g~~~~VRL~gIDaPE~~---------------------------------------- 45 (143)
T 4eqp_A 8 HKEPATLIKAIDGDTVKLMY--KGQPMTFRLLLVDTPEFN---------------------------------------- 45 (143)
T ss_dssp CEEEEEEEEECSSSEEEEEE--TTEEEEEEETTEECCCTT----------------------------------------
T ss_pred ceeeEEEEEEECCCEEEEEe--CCcEEEEEEEeecCCCcC----------------------------------------
Confidence 46689999999999999975 467789999999999973
Q ss_pred CCCCCCchhHHHHHHHHHHHhc-CCeEEEEE---eeccCCCcEEEEEEecCCCCHHHHHHHHHHcCcEEEe-ecccccch
Q 002274 190 GQQSTDEPFALDAKYFTEMRVL-NREVRIVL---EGVDKFKNLIGSVFYPDGETAKDLAMELVENGLAKYI-EWSANMME 264 (944)
Q Consensus 190 ~~~~~~~p~g~eAk~f~e~~ll-~r~V~v~~---~~~D~~g~~~~~V~~~~g~~~~di~~~Ll~~GlA~~~-~~~~~~~~ 264 (944)
||||.+|+.|+..+|. +++|+|.+ .+.|+|||++|+|+. +|.+ ||++||++|||+++ .+..+.
T Consensus 46 ------q~~g~~A~~~l~~ll~~g~~V~~~~d~~~~~D~ygR~la~v~~-~g~~---vn~~lv~~GlA~v~~~~~~~~-- 113 (143)
T 4eqp_A 46 ------EKYGPEASAFTKKMVENAKKDEVEFDKGQRTDKYGRGLAYIYA-DGKM---VNEALVRQGLAKVAYVYKGNN-- 113 (143)
T ss_dssp ------STTHHHHHHHHHHHHHHCSCEEEECCSSCSBCTTSCEEEEEEE-TTEE---HHHHHHHTTSSEECCCCTTSC--
T ss_pred ------CchHHHHHHHHHHHHhcCCeEEEEEccccccCCCCCEEEEEEE-CCch---HHHHHHHCCCeEEEeecCCCc--
Confidence 7899999999999999 69999998 478999999999986 5554 99999999999985 333221
Q ss_pred HHHHHHHHHHHHHHHHhccccccccCCCC
Q 002274 265 EDAKRRLKAADLQAKKTRLRMWTNYVPPQ 293 (944)
Q Consensus 265 ~~~~~~l~~aE~~Ak~~r~glW~~~~~~~ 293 (944)
.+...|.+||++||++++|||+...|++
T Consensus 114 -~~~~~~~~aE~~Ar~~k~GlW~~~~p~~ 141 (143)
T 4eqp_A 114 -THEQLLRKAEAQAKKEKLNIWSEDNADS 141 (143)
T ss_dssp -TTHHHHHHHHHHHHHTTCGGGC------
T ss_pred -chHHHHHHHHHHHHHhCCCCCCCCCCCC
Confidence 1234799999999999999999988764
No 9
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=99.88 E-value=3.9e-23 Score=194.30 Aligned_cols=98 Identities=23% Similarity=0.457 Sum_probs=89.8
Q ss_pred hhHHHHHHHHHHHHhcCCCCCCCCCCccCCeEEEEEcCCCceEEEEEEeeccCccccCCCEEEEEEeecCCeeeecCCCc
Q 002274 709 QKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKL 788 (944)
Q Consensus 709 ~~Le~L~~~L~~~~~~~~p~~~~~~p~~G~lcaA~fs~D~~WYRA~I~~v~~~~~~~~~~~v~V~fVDYGn~e~V~~s~L 788 (944)
..|++||++|+++|.+..+ ..+.|++|++|+|+|++|+.||||+|+++. .++.+.|+||||||++.|+.++|
T Consensus 10 ~~l~~L~~~m~~~y~~~~~--~~~~~~~G~~c~a~~~~d~~wyRA~V~~~~------~~~~~~V~fvDyGn~e~v~~~~L 81 (110)
T 2diq_A 10 LQLDKLVNEMTQHYENSVP--EDLTVHVGDIVAAPLPTNGSWYRARVLGTL------ENGNLDLYFVDFGDNGDCPLKDL 81 (110)
T ss_dssp HHHHHHHHHHHHHHTTSCC--CCCCCCTTCEEEECCTTTCSCEEEEECCCC------SSSCEEEEETTTCCEEEECGGGC
T ss_pred HHHHHHHHHHHHHHccCCC--CCCCCCCCCEEEEEECCCCeEEEEEEEEEC------CCCeEEEEEEeCCCeEEEehHHh
Confidence 6799999999999986533 356799999999999999999999999985 45789999999999999999999
Q ss_pred ccCCccccCcccccceeeecceecCC
Q 002274 789 RPIDPSLSSTPPLAQLCSLAYIKIPA 814 (944)
Q Consensus 789 r~Lp~~f~~lP~qAi~c~LagV~p~~ 814 (944)
|+||++|+.+|+||++|+|++|+|..
T Consensus 82 r~l~~~f~~lP~qA~~c~L~~v~p~~ 107 (110)
T 2diq_A 82 RALRSDFLSLPFQAIECSLARIASGP 107 (110)
T ss_dssp EECCHHHHSSCCSSCCSCSSCSCCSC
T ss_pred hcCcHHHhCCCcceEEEEECCeEECC
Confidence 99999999999999999999999984
No 10
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=99.87 E-value=2.5e-22 Score=183.52 Aligned_cols=90 Identities=22% Similarity=0.478 Sum_probs=82.1
Q ss_pred hhHHHHHHHHHHHHhcCCCCCCCCCCccCCeEEEEEcCCCceEEEEEEeeccCccccCCCEEEEEEeecCCeeeecCCCc
Q 002274 709 QKVASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKL 788 (944)
Q Consensus 709 ~~Le~L~~~L~~~~~~~~p~~~~~~p~~G~lcaA~fs~D~~WYRA~I~~v~~~~~~~~~~~v~V~fVDYGn~e~V~~s~L 788 (944)
.+|++||++|+++|.+..+ ..+.|++|++|+|+|++|+.||||+|+++. +++.+.|+||||||++.|+.++|
T Consensus 5 ~~Le~Lm~~m~~~y~~~~~--~~~~~~~G~~c~a~~~~d~~wyRA~I~~~~------~~~~~~V~fvDyGn~e~v~~~~l 76 (94)
T 3fdr_A 5 LQLDKLVNEMTQHYENSVP--EDLTVHVGDIVAAPLPTNGSWYRARVLGTL------ENGNLDLYFVDFGDNGDCPLKDL 76 (94)
T ss_dssp CHHHHHHHHHHHHHTTCCC--CCCCCCTTCEEEEEETTTTEEEEEEEEEEC------TTSCEEEEETTTCCEEEECGGGC
T ss_pred HHHHHHHHHHHHHHhcCCC--CCCCCCCCCEEEEEECCCCeEEEEEEEEEC------CCCeEEEEEEcCCCeEEEEHHHh
Confidence 5799999999999987543 357899999999999999999999999995 45789999999999999999999
Q ss_pred ccCCccccCcccccceee
Q 002274 789 RPIDPSLSSTPPLAQLCS 806 (944)
Q Consensus 789 r~Lp~~f~~lP~qAi~c~ 806 (944)
|+||++|++||+||++|+
T Consensus 77 r~l~~~f~~lP~qA~~Cs 94 (94)
T 3fdr_A 77 RALRSDFLSLPFQAIECS 94 (94)
T ss_dssp EECCGGGGCSCCCCCCC-
T ss_pred hhcCHHHhcCCcceEEeC
Confidence 999999999999999996
No 11
>4eqp_A Thermonuclease; staphylococcal nuclease, hyperstable, PDTP, ionizable group, hydrolase; HET: THP; 1.35A {Staphylococcus aureus} PDB: 3ero_A* 2rbm_A* 3d8g_A* 3bdc_A* 4f8m_A* 3lx0_A* 3nqt_A* 3nk9_A* 3pmf_A* 3sr1_A* 3t13_A* 3mxp_A* 3r3o_A* 4df7_A* 3np8_A* 3nxw_A* 3oso_A* 3mz5_A* 3mhb_A* 3dhq_A* ...
Probab=99.85 E-value=1.6e-21 Score=191.57 Aligned_cols=131 Identities=20% Similarity=0.281 Sum_probs=105.2
Q ss_pred ceeEEEEEEEEeCCEEEEecCCCCCCCCCcceEEEEeeccCCCCCCCCCCCCCchhHHHHHHHHHhhcC-CcEEEEEEEE
Q 002274 302 QNFTGKVVEVVSGDCIIVADDSIPYGNALAERRVNLSSIRCPKIGNPRKDEKPAAYAREAREFLRTRLI-GRQVNVQMEY 380 (944)
Q Consensus 302 ~~~~~~V~~V~~gD~i~v~~~~~~~~~~~~~~~v~L~~i~~P~~~~~~~~~~~~~~~~ea~e~Lr~~~~-Gk~v~v~~~y 380 (944)
..+.|+|++|+|||||.|..++ .+.+|||++|+||+.. +|||.+|++||+++|. |+.|.|.++.
T Consensus 8 ~~~~~~V~~V~DGDTi~v~~~g-------~~~~VRL~gIDaPE~~--------q~~g~~A~~~l~~ll~~g~~V~~~~d~ 72 (143)
T 4eqp_A 8 HKEPATLIKAIDGDTVKLMYKG-------QPMTFRLLLVDTPEFN--------EKYGPEASAFTKKMVENAKKDEVEFDK 72 (143)
T ss_dssp CEEEEEEEEECSSSEEEEEETT-------EEEEEEETTEECCCTT--------STTHHHHHHHHHHHHHHCSCEEEECCS
T ss_pred ceeeEEEEEEECCCEEEEEeCC-------cEEEEEEEeecCCCcC--------CchHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 4689999999999999998632 3689999999999973 7999999999999998 8999998753
Q ss_pred EeecccccccccccCCCCCCCCCCCCCcCccccCCCCCCcccCccccceeeEEEEEecCCCCCCCCCchhhhhcccCCCC
Q 002274 381 SRKVVVEAAPVAAGAKGPAGTKGPAGTKGQAAAKGPAGEESVGATETRIIDFGSIFLLSPIKGEGDDASAVAQSNAAGQP 460 (944)
Q Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (944)
... +|. ++|.+|+|++
T Consensus 73 ~~~-----------------~D~------------------------ygR~la~v~~----------------------- 88 (143)
T 4eqp_A 73 GQR-----------------TDK------------------------YGRGLAYIYA----------------------- 88 (143)
T ss_dssp SCS-----------------BCT------------------------TSCEEEEEEE-----------------------
T ss_pred ccc-----------------cCC------------------------CCCEEEEEEE-----------------------
Confidence 211 133 3699999997
Q ss_pred CCccHHHHHHhcCcEEEEE-ecCccccchhHHHHHHHHHHHHHcCCCCCCCCCCC
Q 002274 461 AGVNVAELVVSRGLGNVIN-HRDFEERSNYYDALLAAEARAKAGKKGCYSSKEPP 514 (944)
Q Consensus 461 ~~~nv~~~lv~~G~a~v~~-~~~~~~~s~~~~~l~~ae~~A~~~~~G~~~~~~~~ 514 (944)
+|.|||+.||++|||+|+. +..+ ..+.+.|.+||++||++++|||+...|+
T Consensus 89 ~g~~vn~~lv~~GlA~v~~~~~~~---~~~~~~~~~aE~~Ar~~k~GlW~~~~p~ 140 (143)
T 4eqp_A 89 DGKMVNEALVRQGLAKVAYVYKGN---NTHEQLLRKAEAQAKKEKLNIWSEDNAD 140 (143)
T ss_dssp TTEEHHHHHHHTTSSEECCCCTTS---CTTHHHHHHHHHHHHHTTCGGGC-----
T ss_pred CCchHHHHHHHCCCeEEEeecCCC---cchHHHHHHHHHHHHHhCCCCCCCCCCC
Confidence 6789999999999999963 3322 3467889999999999999999987654
No 12
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.5e-18 Score=150.10 Aligned_cols=81 Identities=16% Similarity=0.217 Sum_probs=69.2
Q ss_pred HHHHHHHHhcCCCCCCCCCCccCCeEEEEEcCCCceEEEEEEeeccCccccCCCEEEEEEeecCCeeeecCCCcccCCcc
Q 002274 715 QQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPS 794 (944)
Q Consensus 715 ~~~L~~~~~~~~p~~~~~~p~~G~lcaA~fs~D~~WYRA~I~~v~~~~~~~~~~~v~V~fVDYGn~e~V~~s~Lr~Lp~~ 794 (944)
++.|..++.+..|. +..++.|++|+|+|++|++||||+|+++. .+++++|+|+||||+++|+.++||+|+++
T Consensus 5 ~e~M~~~~~~s~~~--~~~~k~g~~vaak~~d~n~WyRakV~~v~------~~~~veVl~~DyGn~~~V~~~~LR~L~~~ 76 (85)
T 2eqk_A 5 SSGMIAAYENSKWE--PVKWENDMHCAVKIQDKNQWRRGQIIRMV------TDTLVEVLLYDVGVELVVNVDCLRKLEEN 76 (85)
T ss_dssp CCCHHHHHHHSCCC--CCCCCSSCEEEEECSSSCCEEEEEEEEEC------SSSEEEEECTTTCCEEEEETTTEEECCHH
T ss_pred HHHHHHHhccCCCc--ccCccCCCEEEEEeCCCCeEEEEEEEEec------CCCeEEEEEEccCCEEEEEccccccCCHH
Confidence 34455555554444 57899999999999999999999999996 67889999999999999999999999999
Q ss_pred ccCcccccc
Q 002274 795 LSSTPPLAQ 803 (944)
Q Consensus 795 f~~lP~qAi 803 (944)
|..++.+|+
T Consensus 77 l~~~~~~~~ 85 (85)
T 2eqk_A 77 LKTMGRLSL 85 (85)
T ss_dssp HHTCSSCCC
T ss_pred HhhhhhccC
Confidence 999887763
No 13
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=99.59 E-value=1.3e-15 Score=133.81 Aligned_cols=62 Identities=24% Similarity=0.279 Sum_probs=56.3
Q ss_pred CCCCccCCeEEEEEcCCCceEEEEEEeeccCccccCCCEEEEEEeecCCeeeecCCCcccCCccccC
Q 002274 731 AFNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSS 797 (944)
Q Consensus 731 ~~~p~~G~lcaA~fs~D~~WYRA~I~~v~~~~~~~~~~~v~V~fVDYGn~e~V~~s~Lr~Lp~~f~~ 797 (944)
.+.|++|++|+|+|++|+.||||+|+++.. ..+.+.|+||||||++.|++++||+||++|..
T Consensus 7 ~~~~~~G~~c~A~~s~Dg~wYRA~I~~i~~-----~~~~~~V~fiDYGN~e~V~~~~Lr~l~~~ll~ 68 (78)
T 2d9t_A 7 GKVWKPGDECFALYWEDNKFYRAEVEALHS-----SGMTAVVKFTDYGNYEEVLLSNIKPVQTEAWV 68 (78)
T ss_dssp CCCCCTTCEEEEECTTTCCEEEEEEEEECS-----SSSEEEEEETTTTEEEEEEGGGEEECCCCCCC
T ss_pred ccCCCcCCEEEEEECCCCCEEEEEEEEEeC-----CCCEEEEEEEcCCCeEEEcHHHeEeCCHHHhh
Confidence 467999999999999999999999999852 35899999999999999999999999998753
No 14
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=99.58 E-value=1.9e-15 Score=125.73 Aligned_cols=57 Identities=25% Similarity=0.199 Sum_probs=52.1
Q ss_pred CCccCCeEEEEEcCCCceEEEEEEeeccCccccCCCEEEEEEeecCCeeeecCCCcccCCcc
Q 002274 733 NPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPS 794 (944)
Q Consensus 733 ~p~~G~lcaA~fs~D~~WYRA~I~~v~~~~~~~~~~~v~V~fVDYGn~e~V~~s~Lr~Lp~~ 794 (944)
.+++|++|+|+|++|+.||||+|+++.. .++.+.|+|+||||++.|++++||+||++
T Consensus 3 ~~~~G~~c~A~~s~Dg~wYrA~I~~i~~-----~~~~~~V~f~DYGn~e~v~~~~Lr~~~~~ 59 (59)
T 1mhn_A 3 QWKVGDKCSAIWSEDGCIYPATIASIDF-----KRETCVVVYTGYGNREEQNLSDLLSPICE 59 (59)
T ss_dssp CCCTTCEEEEECTTTSCEEEEEEEEEET-----TTTEEEEEETTTTEEEEEEGGGCBCTTCC
T ss_pred cCCcCCEEEEEECCCCCEEEEEEEEEcC-----CCCEEEEEEEcCCCEEEEcHHHeeCCCCC
Confidence 4789999999999999999999999852 36899999999999999999999999863
No 15
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=99.58 E-value=2.3e-15 Score=127.25 Aligned_cols=58 Identities=26% Similarity=0.425 Sum_probs=53.1
Q ss_pred CCCCccCCeEEEEEcCCCceEEEEEEeeccCccccCCCEEEEEEeecCCeeeecCCCcccCCc
Q 002274 731 AFNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDP 793 (944)
Q Consensus 731 ~~~p~~G~lcaA~fs~D~~WYRA~I~~v~~~~~~~~~~~v~V~fVDYGn~e~V~~s~Lr~Lp~ 793 (944)
...|++|++|+|+|++|+.||||+|+++.. ..+.+.|+|+||||++.|++++||+|+.
T Consensus 6 ~~~~~vGd~c~A~~s~Dg~wYrA~I~~v~~-----~~~~~~V~fvdYGn~e~V~~~~Lrpl~~ 63 (64)
T 4a4f_A 6 THSWKVGDKCMAVWSEDGQCYEAEIEEIDE-----ENGTAAITFAGYGNAEVTPLLNLKPVEE 63 (64)
T ss_dssp SSCCCTTCEEEEECTTTSSEEEEEEEEEET-----TTTEEEEEETTTTEEEEEEGGGEECCSC
T ss_pred CCCCCCCCEEEEEECCCCCEEEEEEEEEcC-----CCCEEEEEEEecCCEEEEeHHHcEeCCC
Confidence 467999999999999999999999999952 3589999999999999999999999975
No 16
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=99.57 E-value=2.9e-15 Score=122.36 Aligned_cols=53 Identities=32% Similarity=0.419 Sum_probs=48.0
Q ss_pred CccCCeEEEEEcCCCceEEEEEEeeccCccccCCCEEEEEEeecCCeeeecCCCcccC
Q 002274 734 PKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPI 791 (944)
Q Consensus 734 p~~G~lcaA~fs~D~~WYRA~I~~v~~~~~~~~~~~v~V~fVDYGn~e~V~~s~Lr~L 791 (944)
.++|++|+|+|++|+.||||+|+++.. .++.+.|+||||||++.|++++||+|
T Consensus 2 wk~G~~c~A~~s~Dg~wYrA~I~~i~~-----~~~~~~V~fvDYGn~e~v~~~~lrpi 54 (54)
T 3s6w_A 2 WKPGDECFALYWEDNKFYRAEVEALHS-----SGMTAVVKFIDYGNYEEVLLSNIKPI 54 (54)
T ss_dssp CCTTCEEEEEETTTTEEEEEEEEEC-------CCSEEEEEETTTCCEEEEEGGGEECC
T ss_pred CCCCCEEEEEECCCCCEEEEEEEEEeC-----CCCEEEEEEEccCCeEEEeHHHEEEC
Confidence 579999999999999999999999853 45799999999999999999999986
No 17
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=99.56 E-value=3.7e-15 Score=130.30 Aligned_cols=58 Identities=29% Similarity=0.359 Sum_probs=50.9
Q ss_pred CCCccCCeEEEEEcCCCceEEEEEEeeccCccccCCCEEEEEEeecCCeeeecCCCcccCCcc
Q 002274 732 FNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPS 794 (944)
Q Consensus 732 ~~p~~G~lcaA~fs~D~~WYRA~I~~v~~~~~~~~~~~v~V~fVDYGn~e~V~~s~Lr~Lp~~ 794 (944)
..+++|++|+|+|++|+.||||+|+++.. .++.+.|+||||||++.|++++||+||++
T Consensus 16 ~~~kvGd~C~A~ys~Dg~wYRA~I~~i~~-----~~~~~~V~fvDYGN~e~V~~~~Lr~l~~~ 73 (77)
T 3pnw_C 16 KMWKPGDECFALYWEDNKFYRAEVEALHS-----SGMTAVVKFIDYGNYEEVLLSNIKPIQTE 73 (77)
T ss_dssp TTCCTTCEEEEEETTTTEEEEEEEEEECT-----TSSEEEEEETTTCCEEEEEGGGEECC---
T ss_pred CCCCcCCEEEEEECCCCCEEEEEEEEEeC-----CCCEEEEEEEcCCCeEEEeHHHeEECChh
Confidence 45999999999999999999999999953 45799999999999999999999999864
No 18
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=99.55 E-value=4.3e-15 Score=132.67 Aligned_cols=61 Identities=23% Similarity=0.193 Sum_probs=52.2
Q ss_pred CCCccCCeEEEEEcCCCceEEEEEEeeccCccccCCCEEEEEEeecCCeeeecCCCcccCCccccC
Q 002274 732 FNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSS 797 (944)
Q Consensus 732 ~~p~~G~lcaA~fs~D~~WYRA~I~~v~~~~~~~~~~~v~V~fVDYGn~e~V~~s~Lr~Lp~~f~~ 797 (944)
..+++|++|+|+|++|+.||||+|+++.. ..+.+.|+||||||++.|++++||+|++.|..
T Consensus 9 ~~~kvGd~C~A~ys~Dg~wYrA~I~~i~~-----~~~~~~V~fiDYGN~E~V~~~~Lrp~~~~~~~ 69 (88)
T 1g5v_A 9 QQWKVGDKCSAIWSEDGCIYPATIASIDF-----KRETCVVVYTGYGNREEQNLSDLLSPICEVAN 69 (88)
T ss_dssp CCCCSSCEEEEECTTTCCEEEEEEEEEET-----TTTEEEEEETTTCCEEEEEGGGCBCCC-----
T ss_pred CCCCCCCEEEEEECCCCCEEEEEEEEecC-----CCCEEEEEEecCCCEEEEcHHHcccCChhhcc
Confidence 56999999999999999999999999952 35899999999999999999999999998863
No 19
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=99.45 E-value=1.4e-12 Score=136.57 Aligned_cols=127 Identities=20% Similarity=0.185 Sum_probs=102.3
Q ss_pred CCceeEEEEEEecCCEEEEEEcCCc----------------------eEEEEEEeeecCCCCCCCCCccccCcccccCCC
Q 002274 109 GRPMQGIVEQARDGSTLRVYLLPEF----------------------QFVQVFVAGIQAPAVARRPAAIVDTDTEETNGD 166 (944)
Q Consensus 109 ~~~~~a~Ve~V~DGdt~~v~l~~~~----------------------~~~~v~laGI~~Pe~~~~~~~~~~~~~~~~~g~ 166 (944)
+.-..|+|+.|.+ ++++|+..+.+ +.+.++|+||++|+
T Consensus 66 ~~wyRa~V~~v~~-~~~~V~~vDyG~~~~v~~~~l~~l~~~~~~~p~~a~~~~Lagv~~p~------------------- 125 (218)
T 2wac_A 66 NQWYRAKVERVQG-SNATVLYIDYGNKETLPTNRLAALPPAFSSEKPYATEYALALVALPT------------------- 125 (218)
T ss_dssp CCEEEEEEEEEET-TEEEEEETTTCCEEEEEGGGEEECCGGGSSSCCSEEEEEETTEECCS-------------------
T ss_pred CeEEEEEEEEecC-CeEEEEEEecCCeEEEchHHcccCChhhccCCcceeEEEECCEECCC-------------------
Confidence 5677899999877 88888755322 35577888888886
Q ss_pred ccccccccchhhHHHhhhhcccCCCCCCCchhHHHHHHHHHHHhcCCeEEEEEeeccCCCc-EEEEEEecC-CCCHHHHH
Q 002274 167 VSAAEAVAPLNSAQRLAASTASAGQQSTDEPFALDAKYFTEMRVLNREVRIVLEGVDKFKN-LIGSVFYPD-GETAKDLA 244 (944)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~eAk~f~e~~ll~r~V~v~~~~~D~~g~-~~~~V~~~~-g~~~~di~ 244 (944)
.++|+.+|+.++..++.++.|.+.+...| +|+ +++.++.+. +. ||+
T Consensus 126 ----------------------------~~~w~~eA~~~l~~lv~~k~v~~~v~~~d-~g~~~~V~L~~~~~~~---~in 173 (218)
T 2wac_A 126 ----------------------------DNEDKEEALRAFSEDVLNHKVQLNVELKV-TGSPNLATLRDPTTKV---DFG 173 (218)
T ss_dssp ----------------------------SHHHHHHHHHHHHHHHBTCEEEEEEEECC-TTSCEEEEEECTTTCC---BHH
T ss_pred ----------------------------CcchHHHHHHHHHHHhcCCEEEEEEEEEc-CCceEEEEEEeCCCCc---cHH
Confidence 26899999999999999999999999999 899 999998763 44 499
Q ss_pred HHHHHcCcEEEeecccccchHHHHHHHHHHHHHHHHhccccccc
Q 002274 245 MELVENGLAKYIEWSANMMEEDAKRRLKAADLQAKKTRLRMWTN 288 (944)
Q Consensus 245 ~~Ll~~GlA~~~~~~~~~~~~~~~~~l~~aE~~Ak~~r~glW~~ 288 (944)
++||++|||++++....+. ......|++||++||++|+|||+.
T Consensus 174 ~~Lv~~G~A~~~~~~~~~~-~~~~~~~~~~e~~Ar~~r~GlW~~ 216 (218)
T 2wac_A 174 KQLVAEGLVLAEQRGERKL-KELVDQYKAAQEAARVAHLAIWKY 216 (218)
T ss_dssp HHHHHTTSSEECCCCCGGG-HHHHHHHHHHHHHHHHTTCGGGTT
T ss_pred HHHHHCCCcccccccchhH-HHHHHHHHHHHHHHHHhcCCCccc
Confidence 9999999999863322333 334458999999999999999974
No 20
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.21 E-value=2.1e-11 Score=105.27 Aligned_cols=58 Identities=22% Similarity=0.286 Sum_probs=52.8
Q ss_pred CCCCccCCeEEEEEcCCCceEEEEEEeeccCccccCCCEEEEEEeecCCeeeecCCCcccCCcccc
Q 002274 731 AFNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLS 796 (944)
Q Consensus 731 ~~~p~~G~lcaA~fs~D~~WYRA~I~~v~~~~~~~~~~~v~V~fVDYGn~e~V~~s~Lr~Lp~~f~ 796 (944)
...+++|+.|+|+|+ |+.||||+|.++. .++.+.|+|+|| |.++|+.++||+||+++.
T Consensus 7 ~~~~kvGd~clA~ws-Dg~~Y~A~I~~v~------~~~~~~V~f~Dy-n~e~v~~~~lrplp~~~k 64 (74)
T 2equ_A 7 GFDFKAGEEVLARWT-DCRYYPAKIEAIN------KEGTFTVQFYDG-VIRCLKRMHIKAMPEDAK 64 (74)
T ss_dssp CCCCCTTCEEEEECS-SSSEEEEEEEEES------TTSSEEEEETTS-CEEEECGGGEECCCGGGT
T ss_pred CCCCCCCCEEEEECC-CCCEEEEEEEEEC------CCCEEEEEEecC-CeEEecHHHCeeCChhHh
Confidence 467999999999999 9999999999995 447899999999 999999999999998654
No 21
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}
Probab=98.63 E-value=1.8e-11 Score=106.65 Aligned_cols=55 Identities=20% Similarity=0.269 Sum_probs=50.3
Q ss_pred CCCccCCeEEEEEcCCCceEEEEEEeeccCccccCCCEEEEEEeecCCeeeecCCCcccCCcc
Q 002274 732 FNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPS 794 (944)
Q Consensus 732 ~~p~~G~lcaA~fs~D~~WYRA~I~~v~~~~~~~~~~~v~V~fVDYGn~e~V~~s~Lr~Lp~~ 794 (944)
..+++|+.|+|+|+ |+.||||+|+++. .++.+.|+|+| ||.++|+.++|++||.+
T Consensus 5 ~~~kvGd~clAkws-Dg~wY~A~I~~v~------~~~~y~V~F~D-Gn~E~V~~s~LrPl~~~ 59 (81)
T 2ldm_A 5 SEFQINEQVLASWS-DSRFYPAKVTAVN------KDGTYTVKFYD-GVVQTVKHIHVKAFSKD 59 (81)
Confidence 46889999999999 9999999999985 45689999999 99999999999999864
No 22
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=99.04 E-value=5.7e-11 Score=126.88 Aligned_cols=104 Identities=19% Similarity=0.237 Sum_probs=2.0
Q ss_pred ceeEEEEEeccCCCCCCCcchHHHHHHHHHHhcCceEEEEEEEECCCCcEEEEEEe--CCccHHHHHHHcCCEEEeeccC
Q 002274 563 TCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFLGSLWE--SRTNVAVILLEAGLAKLQTSFG 640 (944)
Q Consensus 563 ~~~I~~~LaGI~~P~~~e~w~~EA~~f~k~~llqR~V~v~v~~~Dk~G~~ig~L~~--~~~nIa~~Lv~~GLA~v~~~~s 640 (944)
.+++.|+|+||++|.. ..|+.+|..++.++++++.+.+.|...|. |+.++.|+. ++.+|+..||++|||+++..+.
T Consensus 127 ~~a~~~~L~~v~~p~~-~~~~~eA~~~l~~lv~~k~v~~~v~~~d~-g~~~v~L~~~~~~~~In~~LV~~GlA~~~~~~~ 204 (246)
T 2hqx_A 127 AQATEYAFAFIQVPQD-DDARTDAVDSVVRDIQNTQCLLNVEHLSA-GCPHVTLQFADSKGDVGLGLVKEGLVMVEVRKE 204 (246)
T ss_dssp CCC-----------------------------------------------------------------------------
T ss_pred hhhhhhhhhceecCCC-ccchHHHHHHHHHHhcCCEEEEEEEEecC-CeEEEEEEeCCCCccHHHHHHHCCCEEecccch
Confidence 4789999999999874 56999999999999999999999988774 778888887 4689999999999999864332
Q ss_pred CCCCCchHHHHHHHHHHHhhcccccccc
Q 002274 641 SDRIPDSHLLEQAEKSAKSQKLKIWENY 668 (944)
Q Consensus 641 ~~~~~~~~~L~~AE~~AK~~k~giW~~~ 668 (944)
.........|..||+.||++++|||..-
T Consensus 205 ~~~~~~~~~~~~~e~~Ar~~r~GlW~~g 232 (246)
T 2hqx_A 205 KQFQKVITEYLNAQESAKSARLNLWRYG 232 (246)
T ss_dssp ----------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHhccCcccCC
Confidence 2122234578999999999999999753
No 23
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=98.31 E-value=8.8e-07 Score=74.47 Aligned_cols=55 Identities=18% Similarity=0.230 Sum_probs=49.1
Q ss_pred CCCccCCeEEEEEcCCCceEEEEEEeeccCccccCCCEEEEEEeecCCeeeecCCCcccCCcc
Q 002274 732 FNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPS 794 (944)
Q Consensus 732 ~~p~~G~lcaA~fs~D~~WYRA~I~~v~~~~~~~~~~~v~V~fVDYGn~e~V~~s~Lr~Lp~~ 794 (944)
...++|+.|.|++ .|+.||-|+|.++. .++.+.|.|.| |++++|..++|+++|.+
T Consensus 5 ~~~~vGd~vmArW-~D~~yYpA~I~si~------~~~~Y~V~F~d-G~~etvk~~~ikp~~~~ 59 (67)
T 3p8d_A 5 SEFQINEQVLACW-SDCRFYPAKVTAVN------KDGTYTVKFYD-GVVQTVKHIHVKAFSKD 59 (67)
T ss_dssp CCCCTTCEEEEEC-TTSCEEEEEEEEEC------TTSEEEEEETT-SCEEEEEGGGEEECC--
T ss_pred cccccCCEEEEEc-CCCCEeeEEEEEEC------CCCeEEEEEeC-CceEEEeHHHcccCCcc
Confidence 3578999999999 79999999999996 55799999999 99999999999999874
No 24
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=98.29 E-value=9.5e-07 Score=77.34 Aligned_cols=56 Identities=18% Similarity=0.233 Sum_probs=49.2
Q ss_pred CCCCccCCeEEEEEcCCCceEEEEEEeeccCccccCCCEEEEEEeecCCeeeecCCCcccCCcc
Q 002274 731 AFNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPS 794 (944)
Q Consensus 731 ~~~p~~G~lcaA~fs~D~~WYRA~I~~v~~~~~~~~~~~v~V~fVDYGn~e~V~~s~Lr~Lp~~ 794 (944)
+...++|+.|.|++ .|+.||-|+|+++. .++.+.|.|-| |++++|...+|+++|.+
T Consensus 19 ~~~f~vGd~VlArW-~D~~yYPAkI~sV~------~~~~YtV~F~D-G~~etvk~~~IKp~~~~ 74 (85)
T 3qii_A 19 SSEFQINEQVLACW-SDCRFYPAKVTAVN------KDGTYTVKFYD-GVVQTVKHIHVKAFSKD 74 (85)
T ss_dssp --CCCTTCEEEEEC-TTSCEEEEEEEEEC------TTSEEEEEETT-SCEEEEEGGGEEECC--
T ss_pred CcccccCCEEEEEe-CCCCEeeEEEEEEC------CCCeEEEEEeC-CCeEEecHHHcccCChh
Confidence 45689999999999 79999999999996 56899999999 99999999999999875
No 25
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=97.82 E-value=0.00011 Score=77.12 Aligned_cols=90 Identities=16% Similarity=0.168 Sum_probs=70.9
Q ss_pred EEEEEEecCCEEEEe------ecCC-----ceeEEEEEeccCCCCCCCcchHHHHHHHHHHhcCceEEEEEEEECCCCcE
Q 002274 544 AVVEYVLSGHRFKVL------IPKE-----TCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTF 612 (944)
Q Consensus 544 ~vVe~V~~G~~~kv~------ip~e-----~~~I~~~LaGI~~P~~~e~w~~EA~~f~k~~llqR~V~v~v~~~Dk~G~~ 612 (944)
..|.||.-|++..|. +|.+ .++++|+|+||.++ +..|+.+|..+|++++.++.+.+.|.+.+..+ +
T Consensus 96 ~~V~~vDyGn~~~v~~~~l~~l~~~f~~lP~qA~~c~L~~v~p~--~~~w~~ea~~~f~~l~~~k~l~~~V~~~~~~~-~ 172 (226)
T 4b9x_A 96 VKVHFVDYGNVEEVTTDQLQAILPQFLLLPFQGMQCWLVDIQPP--NKHWTKEATARFQACVVGLKLQARVVEITANG-V 172 (226)
T ss_dssp EEEECTTTCCEEEEEGGGEECCCGGGSSSCBCCEEEEESSEECS--SSSCCHHHHHHHHHHHTTCCEEEEEEEECSSC-E
T ss_pred EEEEEEecCCEEEEEHHHhccChHHHcccccceEEEEEecEECC--CCCCCHHHHHHHHHHHCCCeEEEEEEEEeCCe-E
Confidence 456666777766663 2322 47999999999975 45799999999999999999999999887544 6
Q ss_pred EEEEEeC----CccHHHHHHHcCCEEEe
Q 002274 613 LGSLWES----RTNVAVILLEAGLAKLQ 636 (944)
Q Consensus 613 ig~L~~~----~~nIa~~Lv~~GLA~v~ 636 (944)
.+.|+.. ..+|+..||++|||...
T Consensus 173 ~V~L~d~~~~~~~~I~~~Lv~~gla~~~ 200 (226)
T 4b9x_A 173 GVELTDLSTPYPKIISDVLIREQLVLRC 200 (226)
T ss_dssp EEEEEECSSSSCEEHHHHHHHTTSSEEC
T ss_pred EEEEEECCCCCCccHHHHHHHCCCcccc
Confidence 6778764 36799999999999763
No 26
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=97.76 E-value=0.00012 Score=75.61 Aligned_cols=90 Identities=14% Similarity=0.145 Sum_probs=71.2
Q ss_pred cEEEEEEecCCEEEEe------ecCC-----ceeEEEEEeccCCCCCCCcchHHHHHHHHHHhcCceEEEEEEEECCCCc
Q 002274 543 PAVVEYVLSGHRFKVL------IPKE-----TCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGT 611 (944)
Q Consensus 543 ~~vVe~V~~G~~~kv~------ip~e-----~~~I~~~LaGI~~P~~~e~w~~EA~~f~k~~llqR~V~v~v~~~Dk~G~ 611 (944)
...|.+|.-|++..|. +|.+ .++++|+|+||.++ +..|+++|..+|++++.++.+.++|...+.. .
T Consensus 95 ~~~V~~vDyG~~~~v~~~~l~~l~~~f~~lP~qA~~c~L~~v~p~--~~~w~~ea~~~f~~l~~~k~l~~~V~~~~~~-~ 171 (201)
T 4b9w_A 95 NVKVHFVDYGNVEEVTTDQLQAILPQFLLLPFQGMQCWLVDIQPP--NKHWTKEATARFQACVVGLKLQARVVEITAN-G 171 (201)
T ss_dssp CEEEEETTTCCEEEECGGGEEECCGGGGSSCBCCEEEEESSEECS--SSSCCHHHHHHHHHHHTTCCEEEEEEEEETT-E
T ss_pred eEEEEEEccCCEEEEEHHHhccChHhHcccchhhEEEEEcCEEcC--CCCCCHHHHHHHHHHHCCCEEEEEEEEEeCC-E
Confidence 3567788888877763 2332 47899999999975 4579999999999999999999999987643 3
Q ss_pred EEEEEEeC----CccHHHHHHHcCCEEE
Q 002274 612 FLGSLWES----RTNVAVILLEAGLAKL 635 (944)
Q Consensus 612 ~ig~L~~~----~~nIa~~Lv~~GLA~v 635 (944)
+.+.|+.. ..+|+..||++|||..
T Consensus 172 ~~V~L~d~~~~~~~~I~~~Lv~~gLA~k 199 (201)
T 4b9w_A 172 VGVELTDLSTPYPKIISDVLIREQLVLR 199 (201)
T ss_dssp EEEEEEECSSSSCEEHHHHHHHTTSSEE
T ss_pred EEEEEEECCCCCccchHHHHHHCcCeec
Confidence 56677753 3679999999999954
No 27
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=97.38 E-value=0.00052 Score=56.43 Aligned_cols=57 Identities=18% Similarity=0.272 Sum_probs=52.5
Q ss_pred CCCCccCCeEEEEEcCCCceEEEEEEeeccCccccCCCEEEEEEeecCCeeeecCCCcccCCc
Q 002274 731 AFNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDP 793 (944)
Q Consensus 731 ~~~p~~G~lcaA~fs~D~~WYRA~I~~v~~~~~~~~~~~v~V~fVDYGn~e~V~~s~Lr~Lp~ 793 (944)
+....+|+.|.|++..|+.||=|+|+++. +.+..+.|.|=| |.++++..++|+++|.
T Consensus 10 ~~~f~vgd~VmaRW~Gd~~yYparItSit-----s~~~~Y~VkfKd-gT~e~L~~kDIKp~~~ 66 (68)
T 2dig_A 10 SRKFADGEVVRGRWPGSSLYYEVEILSHD-----STSQLYTVKYKD-GTELELKENDIKSGPS 66 (68)
T ss_dssp CCSSCSSCEEEEECTTTCCEEEEEEEEEE-----TTTTEEEEECTT-SCEEEEETTTEECCCC
T ss_pred ceEeecCCEEEEEccCCccceEEEEEEec-----cCCceEEEEecC-CCEEEechhccccCCC
Confidence 45678999999999999999999999996 378899999999 9999999999999986
No 28
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=97.18 E-value=0.00096 Score=54.76 Aligned_cols=56 Identities=14% Similarity=0.261 Sum_probs=51.0
Q ss_pred CCCCccCCeEEEEEcCCCceEEEEEEeeccCccccCCCEEEEEEeecCCeeeecCCCcccCC
Q 002274 731 AFNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPID 792 (944)
Q Consensus 731 ~~~p~~G~lcaA~fs~D~~WYRA~I~~v~~~~~~~~~~~v~V~fVDYGn~e~V~~s~Lr~Lp 792 (944)
+....+|+.|.|+++.|+.||=|+|+++. +.+..+.|.|=| |.++++..++|++++
T Consensus 7 ~~~~~vgd~VmaRW~Gd~~yYparI~Si~-----s~~~~Y~V~fKd-gT~e~L~~kDIkp~~ 62 (66)
T 2l8d_A 7 NRKYADGEVVMGRWPGSVLYYEVQVTSYD-----DASHLYTVKYKD-GTELALKESDIRLQS 62 (66)
T ss_dssp SSSSCSSCEEEEECTTSSCEEEEEEEEEE-----TTTTEEEEEETT-SCEEEEEGGGEECSS
T ss_pred ceEeecCCEEEEEcCCCccceEEEEEEec-----cCCceEEEEecC-CCEEeechhccccch
Confidence 34678999999999999999999999996 378899999999 999999999999983
No 29
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=96.86 E-value=0.0027 Score=63.51 Aligned_cols=81 Identities=15% Similarity=0.184 Sum_probs=62.8
Q ss_pred cEEEEEEecCCEEEEe----ecC-----CceeEEEEEeccCCCCCCCcchHHHHHHHHHHhcCceEEEEEEEECCCCcEE
Q 002274 543 PAVVEYVLSGHRFKVL----IPK-----ETCSIAFSFSGVRCPGRNERYSNEALLLMRQKILQRDVEIEVETVDRTGTFL 613 (944)
Q Consensus 543 ~~vVe~V~~G~~~kv~----ip~-----e~~~I~~~LaGI~~P~~~e~w~~EA~~f~k~~llqR~V~v~v~~~Dk~G~~i 613 (944)
.+.|.||.-|++-.+. +|. ..++++|+|+||.+|.. ..+|..+|+++++++.+.+.|......+.+.
T Consensus 77 ~~~V~fvDyGn~~~v~~lr~l~~~f~~lP~qA~~c~L~~v~~~~~----~~ea~~~f~~l~~~k~l~~~V~~~~~~~~~~ 152 (169)
T 3ntk_A 77 KCEVHFIDFGNNAVTQQFRQLPEELAKPARYSRHCELDASTISKC----DAALLQSFIDTRFSETFQVEILATKGTGTHV 152 (169)
T ss_dssp CEEEEETTTTEEEEESCEECCCHHHHSSCCSSEEEEECGGGSCHH----HHHHHHHHHHTTTTSEEEEEEEEECTTSCEE
T ss_pred EEEEEEEecCCeEEhhhhhccCHHHhhCCceeEEEEECCcCCCCC----hHHHHHHHHHHhCCCeEEEEEEEecCCCCEE
Confidence 4567777777665542 121 24789999999998752 8999999999999999999999875434444
Q ss_pred EEEEeCCccHHHHH
Q 002274 614 GSLWESRTNVAVIL 627 (944)
Q Consensus 614 g~L~~~~~nIa~~L 627 (944)
+.|+.+..+|++.|
T Consensus 153 V~L~~~~~~in~~L 166 (169)
T 3ntk_A 153 VRLFYQSKNISEKL 166 (169)
T ss_dssp EEEEETTEEHHHHC
T ss_pred EEEEECCCCHHHHh
Confidence 99999999999876
No 30
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=95.18 E-value=0.033 Score=52.87 Aligned_cols=100 Identities=17% Similarity=0.260 Sum_probs=66.1
Q ss_pred CCcEEEEEEEEEecCCeEEEEEcCchhH-HHHHHHHHHHHhcCCCCCCCCCCccCCeEEEEEcCCC----ceEEEEEEee
Q 002274 684 QKEVLKVVVTEILGGGKFYVQQVGDQKV-ASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADN----SWNRAMIVNA 758 (944)
Q Consensus 684 ~~~~~~V~VT~V~sp~~FyVQ~~~~~~L-e~L~~~L~~~~~~~~p~~~~~~p~~G~lcaA~fs~D~----~WYRA~I~~v 758 (944)
.+.+++.+|+.| +.+.+.|...+.-.. +.+ -+.+... .++......+..|+-+=+....++ .||+|+|+.+
T Consensus 14 ~G~~y~a~V~~v-~~d~~~V~f~n~w~~~~~v--p~~~vRl-pP~~~~~~~f~~gd~VEV~~~~~d~ep~gWw~a~I~~~ 89 (128)
T 3h8z_A 14 NGAFYKGFVKDV-HEDSVTIFFENNWQSERQI--PFGDVRL-PPPADYNKEITEGDEVEVYSRANEQEPCGWWLARVRMM 89 (128)
T ss_dssp TSCEEEEEEEEE-CSSEEEEEETTCTTCCEEE--EGGGEEC-CCCC----CCCTTCEEEEEECC---CCCEEEEEEEEEE
T ss_pred CCCEEEEEEEEE-eCCcEEEEEccccCcceEe--chhhEEc-CCCcccccCCCCCCEEEEEecCCCCCcCccEEEEEEEe
Confidence 478999999997 577899999753110 000 0111110 011112256789999999765444 6999999998
Q ss_pred ccCccccCCCEEEEEEeecCC--eeeecCCCcccCCcc
Q 002274 759 PREKVESVNDKFEVFYIDYGN--QELVPYNKLRPIDPS 794 (944)
Q Consensus 759 ~~~~~~~~~~~v~V~fVDYGn--~e~V~~s~Lr~Lp~~ 794 (944)
.++.+.|.|.+|+. .+.|+..+||++++.
T Consensus 90 -------kg~f~~V~y~~~~~~~~EiV~~~rlR~~n~~ 120 (128)
T 3h8z_A 90 -------KGDFYVIEYAACDATYNEIVTLERLRPVNPN 120 (128)
T ss_dssp -------ETTEEEEEETTC----CEEECGGGEEECCCC
T ss_pred -------eCCEEEEEEcCCCCCcceEEehhheEeCCCC
Confidence 57899999999999 689999999999864
No 31
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=93.79 E-value=0.16 Score=42.21 Aligned_cols=52 Identities=17% Similarity=0.293 Sum_probs=42.8
Q ss_pred CCCccCCeEEEEEcCCCceEEEEEEeeccCccccCCCEEEEEEeecCCeeeecCCCccc
Q 002274 732 FNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRP 790 (944)
Q Consensus 732 ~~p~~G~lcaA~fs~D~~WYRA~I~~v~~~~~~~~~~~v~V~fVDYGn~e~V~~s~Lr~ 790 (944)
...++|+.|+|.++ |+.+|=|.|+++.. ..+.+.|.|-| |....|.+.+|.+
T Consensus 12 ~~f~vGddVLA~wt-DGl~Y~gtI~~V~~-----~~gtC~V~F~D-~s~~w~~~kdi~~ 63 (66)
T 2eqj_A 12 CKFEEGQDVLARWS-DGLFYLGTIKKINI-----LKQSCFIIFED-SSKSWVLWKDIQT 63 (66)
T ss_dssp CCSCTTCEEEEECT-TSCEEEEEEEEEET-----TTTEEEEEETT-TEEEEEETTTEEC
T ss_pred ccccCCCEEEEEEc-cCcEEEeEEEEEcc-----CCcEEEEEEcc-CCEEEEEeecccc
Confidence 46889999999995 99999999999973 56899999988 4555677777754
No 32
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=91.31 E-value=0.48 Score=38.20 Aligned_cols=53 Identities=23% Similarity=0.270 Sum_probs=43.8
Q ss_pred CCccCCeEEEEEcCCCceEEEEEEeeccCccccCCCEEEEEEeecCCeeeecCCCcccCC
Q 002274 733 NPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPID 792 (944)
Q Consensus 733 ~p~~G~lcaA~fs~D~~WYRA~I~~v~~~~~~~~~~~v~V~fVDYGn~e~V~~s~Lr~Lp 792 (944)
..+.|+-|+|+.+ |+.+|=|.|+++.. ....+.|.|-| |....+.+++|.++.
T Consensus 3 ~f~~GedVLarws-DG~fYlGtI~~V~~-----~~~~clV~F~D-~s~~W~~~kdi~~~~ 55 (58)
T 4hcz_A 3 RLWEGQDVLARWT-DGLLYLGTIKKVDS-----AREVCLVQFED-DSQFLVLWKDISPAA 55 (58)
T ss_dssp SCCTTCEEEEECT-TSCEEEEEEEEEET-----TTTEEEEEETT-SCEEEEEGGGEEECS
T ss_pred ccccCCEEEEEec-CCCEEeEEEEEEec-----CCCEEEEEEcC-CCeEEEEhHHccccc
Confidence 3678999999996 89999999999964 56699999987 566778888887663
No 33
>2bud_A Males-absent on the first protein; transferase, MOF, HAT, acetyl-transfer, dosage compensation complex, DCC, royal family; NMR {Drosophila melanogaster} SCOP: b.34.13.3
Probab=91.25 E-value=0.33 Score=43.23 Aligned_cols=59 Identities=14% Similarity=0.269 Sum_probs=45.4
Q ss_pred cCCeEEEEEcCCCceEEEEEEeeccCccccCCCEEEEEEeecCCe--eeecCCCcccCCccc
Q 002274 736 KGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQ--ELVPYNKLRPIDPSL 795 (944)
Q Consensus 736 ~G~lcaA~fs~D~~WYRA~I~~v~~~~~~~~~~~v~V~fVDYGn~--e~V~~s~Lr~Lp~~f 795 (944)
.|+.|.++.+ |+.||+|+|+++...........+-|+|.+|-.+ |.|+.++|..+...+
T Consensus 17 ~~e~vlc~~~-dg~~yeAeIl~ir~~~~~~~~~~YYVHY~g~NkRlDEWV~~~RL~~~~~~~ 77 (92)
T 2bud_A 17 PDKIYFIRRE-DGTVHRGQVLQSRTTENAAAPDEYYVHYVGLNRRLDGWVGRHRISDNADDL 77 (92)
T ss_dssp TTSCEEEECT-TSCEEEEEEEEEECTTTCSSCCEEEEECSSSCTTTCEEEETTTEESCHHHH
T ss_pred CCCEEEEEeC-CCCEEEEEEEEEeeccCCCCCcEEEEEeCCcccccccccCHHHhchhcccC
Confidence 4678888764 8999999999985311101235899999999987 899999999998763
No 34
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.25 E-value=0.5 Score=39.07 Aligned_cols=54 Identities=22% Similarity=0.241 Sum_probs=43.7
Q ss_pred CCCccCCeEEEEEcCCCceEEEEEEeeccCccccCCCEEEEEEeecCCeeeecCCCcccCC
Q 002274 732 FNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPID 792 (944)
Q Consensus 732 ~~p~~G~lcaA~fs~D~~WYRA~I~~v~~~~~~~~~~~v~V~fVDYGn~e~V~~s~Lr~Lp 792 (944)
....+|+-|+|+.+ |+.+|-+.|+++.. ....+.|.|-| +....+.+.+|.++.
T Consensus 8 ~~f~eGqdVLarWs-DGlfYlGtV~kV~~-----~~~~ClV~FeD-~s~~wv~~kdi~~~~ 61 (68)
T 2e5p_A 8 PRLWEGQDVLARWT-DGLLYLGTIKKVDS-----AREVCLVQFED-DSQFLVLWKDISPAA 61 (68)
T ss_dssp CCCCTTCEEEEECT-TSSEEEEEEEEEET-----TTTEEEEEETT-TEEEEEETTTEECCC
T ss_pred cccccCCEEEEEec-CCcEEEeEEEEEec-----CCcEEEEEEcc-CCeeeeeeecccccc
Confidence 35789999999997 99999999999963 56788998877 344568888887763
No 35
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=90.89 E-value=0.47 Score=42.40 Aligned_cols=53 Identities=17% Similarity=0.209 Sum_probs=44.2
Q ss_pred CCCccCCeEEEEEcCCCceEEEEEEeeccCccccCCCEEEEEEeecCCe--eeecCCCcc
Q 002274 732 FNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQ--ELVPYNKLR 789 (944)
Q Consensus 732 ~~p~~G~lcaA~fs~D~~WYRA~I~~v~~~~~~~~~~~v~V~fVDYGn~--e~V~~s~Lr 789 (944)
..+.+|+.|.++. ++.||.|+|+++.. ......+-|+|++|-.+ |.|+.++|.
T Consensus 22 ~~~~vG~kv~v~~--~~~~y~AkIl~ir~---~~~~~~YyVHY~g~NkRlDEWV~~~rl~ 76 (92)
T 2ro0_A 22 DDIIIKCQCWVQK--NDEERLAEILSINT---RKAPPKFYVHYVNYNKRLDEWITTDRIN 76 (92)
T ss_dssp TSCCTTCEEEEEE--TTEEEEEEEEEEEC---SSSSCEEEEEETTSCTTSCEEEEGGGEE
T ss_pred ccccCCCEEEEEE--CCEEEEEEEEEEEE---cCCCcEEEEEeCCcCcccccccCHhHcc
Confidence 4578999999985 89999999999853 12456899999999987 889999985
No 36
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=90.88 E-value=0.29 Score=42.21 Aligned_cols=60 Identities=13% Similarity=0.062 Sum_probs=46.0
Q ss_pred CCccCCeEEEEEcC--CCceEEEEEEeeccCccccCCCEEEEEEeecCCe--eeecCCCcccCCccc
Q 002274 733 NPKKGEIVLAQFSA--DNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQ--ELVPYNKLRPIDPSL 795 (944)
Q Consensus 733 ~p~~G~lcaA~fs~--D~~WYRA~I~~v~~~~~~~~~~~v~V~fVDYGn~--e~V~~s~Lr~Lp~~f 795 (944)
...+|+.|.++... ++.||.|+|+++.. ......+-|.|.+|..+ +.|+.++|......+
T Consensus 5 ~~~vGekV~~~~~d~k~~~~y~AkIl~i~~---~~~~~~Y~VHY~gwnkr~DEWV~~~ri~~~~~~~ 68 (76)
T 2lcc_A 5 PCLTGTKVKVKYGRGKTQKIYEASIKSTEI---DDGEVLYLVHYYGWNVRYDEWVKADRIIWPLDKG 68 (76)
T ss_dssp CSSTTCEEEEEEEETTEEEEEEEEEEEEEE---ETTEEEEEEEETTSCCSSCEEEEGGGEECSSCSS
T ss_pred ccCCCCEEEEEeCCCCCCCEEEEEEEEEEc---cCCceEEEEEeCCcCCCceEecChhhccccccch
Confidence 57899999999862 36899999999852 11234689999999886 789999987765544
No 37
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Probab=90.61 E-value=0.28 Score=44.66 Aligned_cols=57 Identities=19% Similarity=0.196 Sum_probs=45.2
Q ss_pred CCCccCCeEEEEEcCCCceEEEEEEeeccCccccCCCEEEEEEeecCCe--eeecCCCcccCCc
Q 002274 732 FNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQ--ELVPYNKLRPIDP 793 (944)
Q Consensus 732 ~~p~~G~lcaA~fs~D~~WYRA~I~~v~~~~~~~~~~~v~V~fVDYGn~--e~V~~s~Lr~Lp~ 793 (944)
....+|+.|.+.. ++.||.|+|+++.. ......+-|.|.+|..+ |.|+.++|+...+
T Consensus 21 ~~f~vGekVl~~~--~~~~YeAkIl~v~~---~~~~~~Y~VHY~GwNkR~DEWV~~~Rl~k~t~ 79 (102)
T 2f5k_A 21 PKFQEGERVLCFH--GPLLYEAKCVKVAI---KDKQVKYFIHYSGWNKNWDEWVPESRVLKYVD 79 (102)
T ss_dssp CSCCTTCEEEEES--SSSEEEEEEEEEEE---ETTEEEEEEEETTSCGGGCEEEEGGGEEESSH
T ss_pred cccCCCCEEEEEE--CCEEEEEEEEEEEE---cCCCcEEEEEeCCcCCCceeeccHhhcccCCH
Confidence 4578999999976 78999999999852 11345799999999886 7899888877653
No 38
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.45 E-value=0.39 Score=42.46 Aligned_cols=57 Identities=23% Similarity=0.257 Sum_probs=45.9
Q ss_pred CCCccCCeEEEEEc---CCCceEEEEEEeeccCccccCCCEEEEEEeecCCe--eeecCCCcccC
Q 002274 732 FNPKKGEIVLAQFS---ADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQ--ELVPYNKLRPI 791 (944)
Q Consensus 732 ~~p~~G~lcaA~fs---~D~~WYRA~I~~v~~~~~~~~~~~v~V~fVDYGn~--e~V~~s~Lr~L 791 (944)
....+|+.|.|... .++.||.|+|+++.. ......+-|+|++|-.+ |.|+.++|..-
T Consensus 8 ~~~~vG~kv~v~~~~~~~~~~~y~AkIl~i~~---~~~~~~YyVHY~g~NkRlDEWV~~~rl~~~ 69 (87)
T 2eko_A 8 GEIIEGCRLPVLRRNQDNEDEWPLAEILSVKD---ISGRKLFYVHYIDFNRRLDEWVTHERLDLK 69 (87)
T ss_dssp CSCCTTCEEEBCEECTTCCEECCEEEEEEECC---SSSCCCEEEEECSSCSCCCEEECTTTBCGG
T ss_pred ccccCCCEEEEEEcccCCCCeEEEEEEEEEEE---cCCCcEEEEEeCCCCcccccccCHhHcccc
Confidence 45789999999874 488999999999852 11346899999999887 78999999643
No 39
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.82 E-value=0.66 Score=37.83 Aligned_cols=54 Identities=15% Similarity=0.243 Sum_probs=43.9
Q ss_pred CCCCccCCeEEEEEcCCCceEEEEEEeeccCccccCCCEEEEEEeecCCeeeecCCCcccC
Q 002274 731 AFNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPI 791 (944)
Q Consensus 731 ~~~p~~G~lcaA~fs~D~~WYRA~I~~v~~~~~~~~~~~v~V~fVDYGn~e~V~~s~Lr~L 791 (944)
+.....|+-|+|+.+ |+.+|=+.|+++.. ....+.|.|-| +....|.+++|.++
T Consensus 5 ~~~f~eGqdVLarWs-DGlfYlgtV~kV~~-----~~~~ClV~FeD-~s~~wv~~kdi~~~ 58 (63)
T 2e5q_A 5 SSGLTEGQYVLCRWT-DGLYYLGKIKRVSS-----SKQSCLVTFED-NSKYWVLWKDIQHA 58 (63)
T ss_dssp CCCCCTTCEEEEECT-TSCEEEEEECCCCS-----TTSEEEEEETT-SCEEEEEGGGEECC
T ss_pred ccceecCCEEEEEec-CCCEEEEEEEEEec-----CCCEEEEEEcc-CceeEEEeeccccc
Confidence 456889999999996 99999999999963 46789999887 44456888888776
No 40
>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1
Probab=89.47 E-value=0.41 Score=46.20 Aligned_cols=49 Identities=18% Similarity=0.216 Sum_probs=41.3
Q ss_pred CccCCeEEEEEcCCCceEEEEEEeeccCccccCCCEEEEEEeecCCeeeecCCCcc
Q 002274 734 PKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLR 789 (944)
Q Consensus 734 p~~G~lcaA~fs~D~~WYRA~I~~v~~~~~~~~~~~v~V~fVDYGn~e~V~~s~Lr 789 (944)
-.+|.-|.|+++.++.||.|+|.... .++++.|.|=| |...+|...++.
T Consensus 9 ~~iG~rVfArWsd~~yyYpG~V~~~~------~~~~Y~V~FdD-G~~k~v~~~div 57 (156)
T 1ssf_A 9 SFVGLRVVAKWSSNGYFYSGKITRDV------GAGKYKLLFDD-GYECDVLGKDIL 57 (156)
T ss_dssp CSTTCEEEECSSCSSEEEEEEEEECC------TTTEEEEECTT-SCEEEEETTTEE
T ss_pred chhccEEEEEcCCCCcccccEEEEec------cCCEEEEEEcC-CCeeEeeccceE
Confidence 47899999999988889999999874 68899998866 888888866654
No 41
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3
Probab=88.56 E-value=0.79 Score=43.78 Aligned_cols=56 Identities=23% Similarity=0.482 Sum_probs=43.8
Q ss_pred CCCccCCeEEEEEcCCCceEEEEEEeeccCccccCCCEEEEEEeecCCe--eeecCCCcc
Q 002274 732 FNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQ--ELVPYNKLR 789 (944)
Q Consensus 732 ~~p~~G~lcaA~fs~D~~WYRA~I~~v~~~~~~~~~~~v~V~fVDYGn~--e~V~~s~Lr 789 (944)
..+.+|+.|.++.. |+.||.|+|+++.... ......|-|+|.+|-.+ +.|+.++|.
T Consensus 11 ~~~~vGe~v~~~~~-d~~~y~AkIl~i~~~~-~~~~~~YyVHY~gwNkR~DEWV~~~ri~ 68 (133)
T 1wgs_A 11 VTVEIGETYLCRRP-DSTWHSAEVIQSRVND-QEGREEFYVHYVGFNRRLDEWVDKNRLA 68 (133)
T ss_dssp CCCCTTSEEEEEET-TTEEEEEEEEEEEEET-TTTEEEEEEECTTTCSSCCEEECTTTSC
T ss_pred cccCCCCEEEEEeC-CCCEEEEEEEEEEecc-CCCceEEEEeccCcCCCceeecChhhcc
Confidence 35789999999985 8899999999974200 01235789999999887 899999995
No 42
>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=88.29 E-value=0.65 Score=41.57 Aligned_cols=53 Identities=17% Similarity=0.209 Sum_probs=43.4
Q ss_pred CCCccCCeEEEEEcCCCceEEEEEEeeccCccccCCCEEEEEEeecCCe--eeecCCCcc
Q 002274 732 FNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQ--ELVPYNKLR 789 (944)
Q Consensus 732 ~~p~~G~lcaA~fs~D~~WYRA~I~~v~~~~~~~~~~~v~V~fVDYGn~--e~V~~s~Lr 789 (944)
..+.+|+.|.++. ++.||.|+|+++.. ......+-|.|++|-.+ |.|+.++|.
T Consensus 24 ~~~~vG~kv~v~~--~~~~yeAeIl~ir~---~~g~~~YYVHY~g~NkRlDEWV~~~RI~ 78 (94)
T 2rnz_A 24 DDIIIKCQCWVQK--NDEERLAEILSINT---RKAPPKFYVHYVNYNKRLDEWITTDRIN 78 (94)
T ss_dssp GGCCTTEEEEEEC--SSCEEEEEEEEEEC---SSSSCEEEEECTTSCSTTCEEEETTTBC
T ss_pred ccccCCCEEEEEE--CCEEEEEEEEEEEE---cCCCcEEEEEeCCcCcccccccCHHHcc
Confidence 3467999999984 89999999999853 12456899999999876 889999995
No 43
>2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle-transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A
Probab=82.61 E-value=2 Score=39.79 Aligned_cols=51 Identities=22% Similarity=0.276 Sum_probs=41.2
Q ss_pred ccCCeEEEEEcCCCceEEEEEEeeccCccccCCCEEEEEEeecCCeeeecCCCcc---cCC
Q 002274 735 KKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLR---PID 792 (944)
Q Consensus 735 ~~G~lcaA~fs~D~~WYRA~I~~v~~~~~~~~~~~v~V~fVDYGn~e~V~~s~Lr---~Lp 792 (944)
..|.-|.|+++.|+.||=+.|++.. .++++.|.|=| |.+.+|...++- +||
T Consensus 6 ~~G~rV~AkWsdn~~yYpG~V~~~~------~~~ky~V~FdD-g~~~~v~~k~iiv~d~ip 59 (123)
T 2g3r_A 6 FVGLRVVAKWSSNGYFYSGKITRDV------GAGKYKLLFDD-GYECDVLGKDILLCDPIP 59 (123)
T ss_dssp CTTCEEEEECTTTCCEEEEEEEEEE------ETTEEEEEETT-SCEEEEEGGGEECCSSCC
T ss_pred ccceEEEEEeccCCcCcccEEEEec------cCCeEEEEEcC-CCeeEeecceEEEecccC
Confidence 4789999999966689999998863 78999999966 777777766666 555
No 44
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=80.62 E-value=2.4 Score=36.08 Aligned_cols=52 Identities=23% Similarity=0.258 Sum_probs=41.8
Q ss_pred CCCccCCeEEEEEcCCCceEEEEEEeeccCccccCCCEEEEEEeecCCeeeecCCCccc
Q 002274 732 FNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRP 790 (944)
Q Consensus 732 ~~p~~G~lcaA~fs~D~~WYRA~I~~v~~~~~~~~~~~v~V~fVDYGn~e~V~~s~Lr~ 790 (944)
.....|+-|+|+.+ ||.+|=+.|+++.. ..+.+.|.|-| |....+.+++|.+
T Consensus 25 ~~f~eGeDVLarws-DGlfYLGTI~kV~~-----~~e~ClV~F~D-~S~~W~~~kdi~~ 76 (79)
T 2m0o_A 25 PRLWEGQDVLARWT-DGLLYLGTIKKVDS-----AREVCLVQFED-DSQFLVLWKDISP 76 (79)
T ss_dssp CCCCTTCEEEBCCT-TSCCCEEEEEEEET-----TTTEEEEEETT-SCEEEEETTTBCC
T ss_pred ceeccCCEEEEEec-CCCEEeEEEEEecc-----CCCEEEEEEcC-CCeEEEEeecccc
Confidence 45678999999996 99999999999964 57789998877 4556777777754
No 45
>2lrq_A Protein MRG15, NUA4 complex subunit EAF3 homolog; epigenetics, LID complex, transcription; NMR {Drosophila melanogaster}
Probab=80.95 E-value=0.36 Score=42.51 Aligned_cols=57 Identities=18% Similarity=0.236 Sum_probs=44.6
Q ss_pred CCCccCCeEEEEEcCCCceEEEEEEeeccCccccCCCEEEEEEeecCCe--eeecCCCcccCCc
Q 002274 732 FNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQ--ELVPYNKLRPIDP 793 (944)
Q Consensus 732 ~~p~~G~lcaA~fs~D~~WYRA~I~~v~~~~~~~~~~~v~V~fVDYGn~--e~V~~s~Lr~Lp~ 793 (944)
....+|+.|.+.. ++.||.|+|+++.. ......+-|+|.+|..+ |.|+.++|.....
T Consensus 11 ~~~~~Gekv~~~~--~~~~y~AkIl~i~~---~~~~~~YyVHY~GwNkR~DEWV~~~Rl~k~t~ 69 (85)
T 2lrq_A 11 TLFVDGERVLCFH--GPLIYEAKVLKTKP---DATPVEYYIHYAGWSKNWDEWVPENRVLKYND 69 (85)
Confidence 3578999999987 67899999999852 11346899999999886 7899888777654
No 46
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=79.33 E-value=4.8 Score=33.56 Aligned_cols=52 Identities=17% Similarity=0.283 Sum_probs=41.7
Q ss_pred CCCccCCeEEEEEcCCCceEEEEEEeeccCccccCCCEEEEEEeecCCeeeecCCCcccCC
Q 002274 732 FNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPID 792 (944)
Q Consensus 732 ~~p~~G~lcaA~fs~D~~WYRA~I~~v~~~~~~~~~~~v~V~fVDYGn~e~V~~s~Lr~Lp 792 (944)
.....|+-|+|+.+ ||.+|=+.|++. ..+.+.|.|-|= ....|.+++|+.|-
T Consensus 14 ~~~~~geDVL~rw~-DG~fYLGtIVd~-------~~~~ClV~FeD~-S~~Wv~~kdi~kl~ 65 (69)
T 2xk0_A 14 VTYALQEDVFIKCN-DGRFYLGTIIDQ-------TSDQYLIRFDDQ-SEQWCEPDKLRKLG 65 (69)
T ss_dssp CCCCTTCEEEEECT-TSCEEEEEEEEE-------CSSCEEEEETTC-CEEEECTTTEECSS
T ss_pred cccccCCeEEEEec-CCCEEEEEEEec-------CCceEEEEecCC-cceeeeHHHHHhhc
Confidence 56788999999985 899999999876 567888888772 23468888888874
No 47
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=79.07 E-value=2.5 Score=43.19 Aligned_cols=70 Identities=11% Similarity=0.198 Sum_probs=49.1
Q ss_pred CCccCCeEEEEEcCCCceEEEEEEeeccCccccCCCEEEEEEeecCCeeeecCCCcccC-CccccCcccccceeee
Q 002274 733 NPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPI-DPSLSSTPPLAQLCSL 807 (944)
Q Consensus 733 ~p~~G~lcaA~fs~D~~WYRA~I~~v~~~~~~~~~~~v~V~fVDYGn~e~V~~s~Lr~L-p~~f~~lP~qAi~c~L 807 (944)
.+++|+.+.++.+ ++.||||+|+++.. ...+.++.|.|-|=|. ..|+.+.|..- .+.+..||--|.-|.+
T Consensus 8 ~l~Vg~~vlg~k~-~~~W~rg~v~~I~~---~~~g~~YkVkF~~~g~-~ivs~~hiA~~~~p~~~~l~vG~RVVA~ 78 (213)
T 3dlm_A 8 DLIVSMRILGKKR-TKTWHKGTLIAIQT---VGPGKKYKVKFDNKGK-SLLSGNHIAYDYHPPADKLYVGSRVVAK 78 (213)
T ss_dssp TEETTCEEEEECT-TSBEEEEEEEEEEE---ETTEEEEEEEESSSCE-EEECGGGEEESSCCCGGGCCTTCEEEEE
T ss_pred cEEEccEEEEEec-CCcEEEEEEEEEEE---CCCCeEEEEEEcCCCC-EEeecceEEEecCCCccEEeEEEEEEEE
Confidence 5889999999995 79999999999852 1124569999988665 46777776662 4444455555544444
No 48
>3m9q_A Protein MALE-specific lethal-3; chromodomain, MSL3, methyllysine recognition, aromatic CAGE, complex, transcription upregulation; 1.29A {Drosophila melanogaster} SCOP: b.34.13.0
Probab=69.71 E-value=6.3 Score=35.68 Aligned_cols=62 Identities=16% Similarity=0.096 Sum_probs=43.6
Q ss_pred CCCccCCeEEEEEcC---CCceEEEEEEeeccCccc--cCCCEEEEEEeecCCe--eeecCCCcccCCc
Q 002274 732 FNPKKGEIVLAQFSA---DNSWNRAMIVNAPREKVE--SVNDKFEVFYIDYGNQ--ELVPYNKLRPIDP 793 (944)
Q Consensus 732 ~~p~~G~lcaA~fs~---D~~WYRA~I~~v~~~~~~--~~~~~v~V~fVDYGn~--e~V~~s~Lr~Lp~ 793 (944)
....+|+-|++.+.+ ...||.|+|+++...... .....+.|.|..|..+ +.|+.++|....+
T Consensus 18 ~~f~~GEkVLc~h~d~~kg~~lYeAKIl~v~~~~~~~~~~~~~Y~VHY~GWn~rwDEWV~edRilk~~e 86 (101)
T 3m9q_A 18 PLFHKGEIVLCYEPDKSKARVLYTSKVLNVFERRNEHGLRFYEYKIHFQGWRPSYDRAVRATVLLKDTE 86 (101)
T ss_dssp CCCCTTCEEEEECCCTTSCCCEEEEEEEEEEEEECTTSCEEEEEEEEETTSCGGGCEEECGGGEEECCH
T ss_pred CcccCCCEEEEEecCCCCCCcceEeEEEEEEecCCccccCceEEEEEeCCCCcCceeecCHHHcccCCH
Confidence 457899999997632 478999999998520000 0124688888877775 8899888877653
No 49
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=69.13 E-value=6 Score=36.83 Aligned_cols=54 Identities=13% Similarity=0.172 Sum_probs=40.4
Q ss_pred CCCccCCeEEEEEcCCCceEEEEEEeeccCccccCCCEEEEEEeecCCeeeecCCCcccCC
Q 002274 732 FNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPID 792 (944)
Q Consensus 732 ~~p~~G~lcaA~fs~D~~WYRA~I~~v~~~~~~~~~~~v~V~fVDYGn~e~V~~s~Lr~Lp 792 (944)
..+..|+-|.|+.. ++.+|||+|+++. ....+.|.|-|==.+..++..+|-..+
T Consensus 4 ~~v~vGq~V~akh~-ngryy~~~V~~~~------~~~~y~V~F~DgS~s~dl~peDIvs~d 57 (118)
T 2qqr_A 4 QSITAGQKVISKHK-NGRFYQCEVVRLT------TETFYEVNFDDGSFSDNLYPEDIVSQD 57 (118)
T ss_dssp SCCCTTCEEEEECT-TSSEEEEEEEEEE------EEEEEEEEETTSCEEEEECGGGBCSSC
T ss_pred ceeccCCEEEEECC-CCCEEeEEEEEEe------eEEEEEEEcCCCCccCCCCHhhccccc
Confidence 35789999999984 8999999999984 456788888775555665555554443
No 50
>3mea_A SAGA-associated factor 29 homolog; structural genomics consortium, SGC, nucleus, transcription, transcription regulation, chromosomal protein, DNA-binding; HET: M3L; 1.26A {Homo sapiens} PDB: 3meu_A* 3met_A* 3me9_A* 3mev_A* 3lx7_A 3mew_A
Probab=63.51 E-value=8.2 Score=38.58 Aligned_cols=84 Identities=19% Similarity=0.326 Sum_probs=56.6
Q ss_pred CcEEEEEEEEEec-CCeEEEEEcCchhHHHHHHHHHHHHhc--C-CCCCC---------CCCCccCCeEEEEEcCCCceE
Q 002274 685 KEVLKVVVTEILG-GGKFYVQQVGDQKVASVQQQLASLNLQ--E-APVIG---------AFNPKKGEIVLAQFSADNSWN 751 (944)
Q Consensus 685 ~~~~~V~VT~V~s-p~~FyVQ~~~~~~Le~L~~~L~~~~~~--~-~p~~~---------~~~p~~G~lcaA~fs~D~~WY 751 (944)
.+++.+.|..+.. ...|-|+..+.+. ++ .+..+ . .|++. .....+|+.|+|.|.+--++|
T Consensus 62 ~~WILa~Vv~~~~~~~rYeV~D~d~eg-----~~--~~~~s~~~IIPLP~~~a~p~t~~~~~f~~G~~VLAlYP~TT~FY 134 (180)
T 3mea_A 62 EQWILAEVVSYSHATNKYEVDDIDEEG-----KE--RHTLSRRRVIPLPQWKANPETDPEALFQKEQLVLALYPQTTCFY 134 (180)
T ss_dssp EEEEEEEEEEEETTTTEEEEEECCTTC-----CE--EEEEEGGGEEECCSBBCCTTTCGGGSCCTTCEEEEECTTSSEEE
T ss_pred ccEEEEEEEEEcCCCCEEEEecCCCCC-----ce--eEEeCHHHEEECCCcCCCcccCccccCCCCCEEEEeCCCCceee
Confidence 5688888888774 5789999887320 00 11111 0 12211 234779999999999888999
Q ss_pred EEEEEeeccCccccCCCEEEEEEeecCC
Q 002274 752 RAMIVNAPREKVESVNDKFEVFYIDYGN 779 (944)
Q Consensus 752 RA~I~~v~~~~~~~~~~~v~V~fVDYGn 779 (944)
||.|....+ ...+.+.|.|-|-..
T Consensus 135 ~A~V~~~p~----~~~~~y~L~FEdde~ 158 (180)
T 3mea_A 135 RALIHAPPQ----RPQDDYSVLFEDTSY 158 (180)
T ss_dssp EEEEEECCS----STTCCEEEEEBCTTS
T ss_pred EEEEecCCC----CCCCcEEEEEcCCCc
Confidence 999998753 123689999998763
No 51
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=57.15 E-value=18 Score=34.09 Aligned_cols=47 Identities=13% Similarity=0.412 Sum_probs=34.4
Q ss_pred eEEEEEcCCCceEEEEEEeeccCccccCCCEEEEEEee-cCCeeeecCCCcccCCc
Q 002274 739 IVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYID-YGNQELVPYNKLRPIDP 793 (944)
Q Consensus 739 lcaA~fs~D~~WYRA~I~~v~~~~~~~~~~~v~V~fVD-YGn~e~V~~s~Lr~Lp~ 793 (944)
.+=++- .+|.||=|.|..+ .++.+.|.|-| .--.+.|+++++|+.|+
T Consensus 7 ~VEV~~-~~G~~y~a~V~~v-------~~d~~~V~f~n~w~~~~~vp~~~vRlpP~ 54 (128)
T 3h8z_A 7 PVEVRG-SNGAFYKGFVKDV-------HEDSVTIFFENNWQSERQIPFGDVRLPPP 54 (128)
T ss_dssp EEEEEC-TTSCEEEEEEEEE-------CSSEEEEEETTCTTCCEEEEGGGEECCCC
T ss_pred EEEEec-CCCCEEEEEEEEE-------eCCcEEEEEccccCcceEechhhEEcCCC
Confidence 333443 5789999999987 57778888854 22257899999998775
No 52
>3m9p_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3oa6_A* 3ob9_A*
Probab=56.66 E-value=12 Score=34.42 Aligned_cols=61 Identities=18% Similarity=0.149 Sum_probs=42.2
Q ss_pred CCCccCCeEEEEEcCC----CceEEEEEEeeccCccccC--CCEEEEEEeecCCe--eeecCCCcccCCc
Q 002274 732 FNPKKGEIVLAQFSAD----NSWNRAMIVNAPREKVESV--NDKFEVFYIDYGNQ--ELVPYNKLRPIDP 793 (944)
Q Consensus 732 ~~p~~G~lcaA~fs~D----~~WYRA~I~~v~~~~~~~~--~~~v~V~fVDYGn~--e~V~~s~Lr~Lp~ 793 (944)
....+|+-|++.+ .| ..||-|+|+++........ ...+.|.|..+-.+ +.|+.++|....+
T Consensus 18 ~~F~~GEkVLc~h-gd~~k~~~lYeAKIl~v~~~~~~~g~~~~~Y~VHY~GWn~~wDEWV~e~rllk~~e 86 (110)
T 3m9p_A 18 FKFHSGEKVLCFE-PDPTKARVLYDAKIVDVIVGKDEKGRKIPEYLIHFNGWNRSWDRWAAEDHVLRDTD 86 (110)
T ss_dssp CCSCTTCEEEEEC-SCTTSCCCEEEEEEEEEEEEECTTCCEEEEEEEEETTSCGGGCEEEEGGGEEECCH
T ss_pred CcccCCCEEEEEc-CCCCCCCCceeeEEEEEEeccCcccccceEEEEEECCCCcchhhccCHhhhhcCCH
Confidence 4578999999975 34 6899999999852000000 14688888877664 7898888777643
No 53
>1ri0_A Hepatoma-derived growth factor; HDGF, HATH domain, PWWP domain, heparin-binding, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.9.2 PDB: 2b8a_A 2nlu_A
Probab=54.66 E-value=25 Score=32.18 Aligned_cols=63 Identities=24% Similarity=0.354 Sum_probs=47.3
Q ss_pred CCCCccCCeEEEEEcCCCceEEEEEEeeccCccccCCCEEEEEEeecCCeeeecCCCcccCCcc
Q 002274 731 AFNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPS 794 (944)
Q Consensus 731 ~~~p~~G~lcaA~fs~D~~WYRA~I~~v~~~~~~~~~~~v~V~fVDYGn~e~V~~s~Lr~Lp~~ 794 (944)
....++|++|.|+.. .--|.=|+|++..........+.+.|+|..-.....|+.++|.++...
T Consensus 17 ~~~~~~GdlVwaK~k-GyP~WPa~V~~~p~~~~k~~~~~~~V~FFGt~~~awv~~~~l~pf~~~ 79 (110)
T 1ri0_A 17 QKEYKCGDLVFAKMK-GYPHWPARIDEMPEAAVKSTANKYQVFFFGTHETAFLGPKDLFPYEES 79 (110)
T ss_dssp SSSCCTTCEEEEEET-TEEEEEEEEECCCSSSSCCCSSCEEEEETTTTEEEEECSTTEECHHHH
T ss_pred cCCCCCCCEEEEEeC-CCCCCCEEEecccHhhcCCCCCEEEEEEecCCCEEEECHHHccchhhh
Confidence 356889999999972 446999999986431111235789999997777778999999999653
No 54
>2k3y_A Chromatin modification-related protein EAF3; dimethylated histone H3K36, EAF3-H3K36ME2 fusion, chromo barrel domain, histone deacetylase; HET: M2L; NMR {Saccharomyces cerevisiae}
Probab=51.40 E-value=15 Score=34.92 Aligned_cols=59 Identities=20% Similarity=0.247 Sum_probs=41.5
Q ss_pred CCccCCeEEEEEcCCCceEEEEEEeeccCc----cc---------------------cC----------CCEEEEEEeec
Q 002274 733 NPKKGEIVLAQFSADNSWNRAMIVNAPREK----VE---------------------SV----------NDKFEVFYIDY 777 (944)
Q Consensus 733 ~p~~G~lcaA~fs~D~~WYRA~I~~v~~~~----~~---------------------~~----------~~~v~V~fVDY 777 (944)
...+|+.|+|.. ...||-|+|+++.... .. .. ...+-|+|..|
T Consensus 9 ~f~~gekvl~~h--g~llYeAKVl~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~Y~VHY~GW 86 (136)
T 2k3y_A 9 EFALGGRVLAFH--GPLMYEAKILKIWDPSSKMYTSIPNDKPGGSSQATKEIKPQKLGEDESIPEEIINGKSFFIHYQGW 86 (136)
T ss_dssp SCCTTSEEEEEC--SSCEEEEEEEEEEETTTTEEEECSSCCCTTCSCCCSSBCCCCSCSSCCCCHHHHTSCEEEECCTTS
T ss_pred ccCCCCEEEEEE--CCeeEEEEEEEEEeccccccccccccccccccccccccccccccccccCcccccccceEEEEeCCc
Confidence 477899999987 6789999999975210 00 00 11677777776
Q ss_pred CCe--eeecCCCcccCCc
Q 002274 778 GNQ--ELVPYNKLRPIDP 793 (944)
Q Consensus 778 Gn~--e~V~~s~Lr~Lp~ 793 (944)
-.+ |.|+.++|+.+.+
T Consensus 87 n~rwDEWV~~dRil~~~e 104 (136)
T 2k3y_A 87 KSSWDEWVGYDRIRAYNE 104 (136)
T ss_dssp CGGGCEEEETTTEEESCH
T ss_pred CCcceeeecHhhhhhCCH
Confidence 665 7899998888764
No 55
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=48.25 E-value=24 Score=32.81 Aligned_cols=100 Identities=18% Similarity=0.223 Sum_probs=65.2
Q ss_pred CCCcEEEEEEEEEecCCeEEEEEcCchhHHHH-HHHHHHHHhcCCCCCCCCCCccCCeEEEEEcCCCceEEEEEEeeccC
Q 002274 683 KQKEVLKVVVTEILGGGKFYVQQVGDQKVASV-QQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVNAPRE 761 (944)
Q Consensus 683 ~~~~~~~V~VT~V~sp~~FyVQ~~~~~~Le~L-~~~L~~~~~~~~p~~~~~~p~~G~lcaA~fs~D~~WYRA~I~~v~~~ 761 (944)
+.+.++...|+.+.+...+-|.+.++.--..| -+.|.++. +. ....|..|+.+.++++ ||.-|.|..++..
T Consensus 17 ~ngryy~~~V~~~~~~~~y~V~F~DgS~s~dl~peDIvs~d---c~--~~GpP~~G~~V~V~W~-DG~~y~a~f~g~~-- 88 (118)
T 2qqr_A 17 KNGRFYQCEVVRLTTETFYEVNFDDGSFSDNLYPEDIVSQD---CL--QFGPPAEGEVVQVRWT-DGQVYGAKFVASH-- 88 (118)
T ss_dssp TTSSEEEEEEEEEEEEEEEEEEETTSCEEEEECGGGBCSSC---HH--HHCCCCTTCEEEEECT-TSCEEEEEEEEEE--
T ss_pred CCCCEEeEEEEEEeeEEEEEEEcCCCCccCCCCHhhccccc---cc--ccCCCCCCCEEEEEcC-CCCEeeeEEecee--
Confidence 45788999999998775555666553100000 00111100 00 0125889999999995 9999999998864
Q ss_pred ccccCCCEEEEEEeecCCeeeecCCCcccCCccc
Q 002274 762 KVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSL 795 (944)
Q Consensus 762 ~~~~~~~~v~V~fVDYGn~e~V~~s~Lr~Lp~~f 795 (944)
....++|.|=| |..-+++.++|+.+.++|
T Consensus 89 ----~~~~Y~V~feD-gs~~~~kR~~iyt~~E~l 117 (118)
T 2qqr_A 89 ----PIQMYQVEFED-GSQLVVKRDDVYTLDEEL 117 (118)
T ss_dssp ----EEEEEEEEETT-SCEEEECGGGEEETTSCC
T ss_pred ----EEEEEEEEECC-CCEEEEcHHHeeccccCC
Confidence 45677777766 667788999999998754
No 56
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=47.58 E-value=21 Score=33.34 Aligned_cols=96 Identities=16% Similarity=0.235 Sum_probs=63.9
Q ss_pred CCCcEEEEEEEEEecCCeEEEEEcCc---hh--HHHHHHHHHHHHhcCCCCCCCCCCccCCeEEEEEcCCCceEEEEEEe
Q 002274 683 KQKEVLKVVVTEILGGGKFYVQQVGD---QK--VASVQQQLASLNLQEAPVIGAFNPKKGEIVLAQFSADNSWNRAMIVN 757 (944)
Q Consensus 683 ~~~~~~~V~VT~V~sp~~FyVQ~~~~---~~--Le~L~~~L~~~~~~~~p~~~~~~p~~G~lcaA~fs~D~~WYRA~I~~ 757 (944)
+.+.++...|+.+.+...+-|++.++ .. -+.| .++ ++ . ....|..|+.+.++++ ||.-|.|..++
T Consensus 18 ~ngryy~~~V~~~~~~~~y~V~F~DgS~s~dl~PedI----vs~---dc-~-~~GpP~~G~~V~V~W~-DG~~y~a~f~g 87 (123)
T 2xdp_A 18 RNTRYYSCRVMAVTSQTFYEVMFDDGSFSRDTFPEDI----VSR---DC-L-KLGPPAEGEVVQVKWP-DGKLYGAKYFG 87 (123)
T ss_dssp CCCCCCCCEEEEEEEEEEEEEEETTSCEEEEECGGGB----CSS---CH-H-HHCCCCTTCEEEEECT-TSCEEEEEEEE
T ss_pred CCCcEEeEEEEEEeeEEEEEEEcCCCCccCCCCHhHc----ccc---cc-c-ccCCCCCCCEEEEEcC-CCCEEeEEEee
Confidence 34678888899998755555666553 10 0111 000 00 0 0135889999999995 99999999888
Q ss_pred eccCccccCCCEEEEEEeecCCeeeecCCCcccCCccc
Q 002274 758 APREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSL 795 (944)
Q Consensus 758 v~~~~~~~~~~~v~V~fVDYGn~e~V~~s~Lr~Lp~~f 795 (944)
.. ....++|.|=| |..-+++.++|+.+.++|
T Consensus 88 ~~------~~~~YtV~FeD-gs~~~~kR~~iyt~~E~l 118 (123)
T 2xdp_A 88 SN------IAHMYQVEFED-GSQIAMKREDIYTLDEEL 118 (123)
T ss_dssp EE------EEEEEEEECTT-SCEEEEEGGGCCCSSSCC
T ss_pred ee------eEEEEEEEECC-CCeEEecHHHcccccccc
Confidence 74 34566776655 567788999999998865
No 57
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=44.90 E-value=25 Score=28.17 Aligned_cols=39 Identities=21% Similarity=0.347 Sum_probs=32.2
Q ss_pred cceeEEEEEEEEe-CCEEEEecCCCCCCCCCcceEEEEeeccCCC
Q 002274 301 DQNFTGKVVEVVS-GDCIIVADDSIPYGNALAERRVNLSSIRCPK 344 (944)
Q Consensus 301 ~~~~~~~V~~V~~-gD~i~v~~~~~~~~~~~~~~~v~L~~i~~P~ 344 (944)
++.++|+|.+|.. ++++.|...+ ||+ ...|.+++|+.+.
T Consensus 18 g~wYrA~I~~i~~~~~~~~V~f~D--YGn---~e~v~~~~Lr~~~ 57 (59)
T 1mhn_A 18 GCIYPATIASIDFKRETCVVVYTG--YGN---REEQNLSDLLSPI 57 (59)
T ss_dssp SCEEEEEEEEEETTTTEEEEEETT--TTE---EEEEEGGGCBCTT
T ss_pred CCEEEEEEEEEcCCCCEEEEEEEc--CCC---EEEEcHHHeeCCC
Confidence 4679999999986 6899999844 776 7899999999753
No 58
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=43.91 E-value=6.4 Score=36.91 Aligned_cols=50 Identities=10% Similarity=0.120 Sum_probs=37.7
Q ss_pred CCCccCCeEEEEEcCCCceEEEEEEeeccCccccCCCEEEEEEeecCCeeeecCCCc
Q 002274 732 FNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKL 788 (944)
Q Consensus 732 ~~p~~G~lcaA~fs~D~~WYRA~I~~v~~~~~~~~~~~v~V~fVDYGn~e~V~~s~L 788 (944)
..+.+|+-|.|+.. ++.+|||.|+++. ....+.|.|-|==.+..+...+|
T Consensus 5 ~~v~vGq~V~ak~~-ngryy~~~V~~~~------~~~~y~V~F~DgS~s~dl~PedI 54 (123)
T 2xdp_A 5 KVISVGQTVITKHR-NTRYYSCRVMAVT------SQTFYEVMFDDGSFSRDTFPEDI 54 (123)
T ss_dssp CCCCTTCCCCCCCC-CCCCCCCEEEEEE------EEEEEEEEETTSCEEEEECGGGB
T ss_pred cccccCCEEEEECC-CCcEEeEEEEEEe------eEEEEEEEcCCCCccCCCCHhHc
Confidence 35889999999975 7999999999984 45677888877555555555555
No 59
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=43.75 E-value=22 Score=27.92 Aligned_cols=37 Identities=30% Similarity=0.350 Sum_probs=29.2
Q ss_pred cceeEEEEEEEE-eCCEEEEecCCCCCCCCCcceEEEEeeccC
Q 002274 301 DQNFTGKVVEVV-SGDCIIVADDSIPYGNALAERRVNLSSIRC 342 (944)
Q Consensus 301 ~~~~~~~V~~V~-~gD~i~v~~~~~~~~~~~~~~~v~L~~i~~ 342 (944)
++.++|+|.+|. +++++.|...+ ||+ ...|.+++||+
T Consensus 16 g~wYrA~I~~i~~~~~~~~V~fvD--YGn---~e~v~~~~lrp 53 (54)
T 3s6w_A 16 NKFYRAEVEALHSSGMTAVVKFID--YGN---YEEVLLSNIKP 53 (54)
T ss_dssp TEEEEEEEEEC--CCSEEEEEETT--TCC---EEEEEGGGEEC
T ss_pred CCEEEEEEEEEeCCCCEEEEEEEc--cCC---eEEEeHHHEEE
Confidence 467999999997 47899898844 676 78899998874
No 60
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A
Probab=42.65 E-value=94 Score=27.17 Aligned_cols=56 Identities=18% Similarity=0.299 Sum_probs=44.0
Q ss_pred CCCCccCCeEEEEEcCCCceEEEEEEeeccCccccCCCEEEEEEeecCCe--eeecCC--CcccCC
Q 002274 731 AFNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQ--ELVPYN--KLRPID 792 (944)
Q Consensus 731 ~~~p~~G~lcaA~fs~D~~WYRA~I~~v~~~~~~~~~~~v~V~fVDYGn~--e~V~~s--~Lr~Lp 792 (944)
....++|+.+-|.-. .+.||=|+|+.+.. .+..+.|.|-.+.+. +.++.+ +|+++-
T Consensus 17 ~~~F~vGmkLEA~D~-~~~~~~a~i~~v~~-----~~~~v~VHfdGW~~~yDeWv~~dS~~I~P~g 76 (88)
T 2eqm_A 17 GITFEIGARLEALDY-LQKWYPSRIEKIDY-----EEGKMLVHFERWSHRYDEWIYWDSNRLRPLE 76 (88)
T ss_dssp SCCCCSSCEEEEECT-TSCEEEEEEEEEET-----TTTEEEEEESSSTTTEEEEEETTSCCEECCC
T ss_pred cCcCCCCCEEEEEcC-CCCeeEEEEEEEec-----cCCEEEEEECCCCCcccEEeeCCCCcEeccc
Confidence 456889999988853 57899999998753 578999999999886 677766 777764
No 61
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=42.05 E-value=35 Score=35.28 Aligned_cols=61 Identities=21% Similarity=0.258 Sum_probs=43.7
Q ss_pred CccCCeEEEEEcCCCceEEEEEEeeccCccc----cCCCEEEEEEeecCCeee--ecCCCcccCCcc
Q 002274 734 PKKGEIVLAQFSADNSWNRAMIVNAPREKVE----SVNDKFEVFYIDYGNQEL--VPYNKLRPIDPS 794 (944)
Q Consensus 734 p~~G~lcaA~fs~D~~WYRA~I~~v~~~~~~----~~~~~v~V~fVDYGn~e~--V~~s~Lr~Lp~~ 794 (944)
-++|+++-|+-...|.||.|.|+.+.+.... ..+-.+.|.|=||....+ +...+||+--..
T Consensus 3 yki~~~vd~~d~~~Gawfea~i~~v~~~~~~~~~~~d~~~y~v~y~~~~~~~~~~~~~~~irprar~ 69 (226)
T 3ask_A 3 YKVNEYVDARDTNMGAWFEAQVVRVTRKAPSRPALEEDVIYHVKYDDYPENGVVQMNSRDVRARART 69 (226)
T ss_dssp SCTTCEEEEECTTTCCEEEEEEEEEEECC------CCCEEEEEEETTCGGGCEEEEEGGGEEECCCC
T ss_pred cccCceEEeeecCCCceeEEEEEEEeccccccCCCCCceEEEeecccCcccCceecccccccccccc
Confidence 4789999999878899999999999752110 123467888888877665 456677776543
No 62
>3mea_A SAGA-associated factor 29 homolog; structural genomics consortium, SGC, nucleus, transcription, transcription regulation, chromosomal protein, DNA-binding; HET: M3L; 1.26A {Homo sapiens} PDB: 3meu_A* 3met_A* 3me9_A* 3mev_A* 3lx7_A 3mew_A
Probab=40.64 E-value=59 Score=32.40 Aligned_cols=58 Identities=24% Similarity=0.414 Sum_probs=44.9
Q ss_pred CCCCccCCeEEEEEcC---CCceEEEEEEeeccCccccCCCEEEEEEeecCCe--eeecCCCcccCCc
Q 002274 731 AFNPKKGEIVLAQFSA---DNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQ--ELVPYNKLRPIDP 793 (944)
Q Consensus 731 ~~~p~~G~lcaA~fs~---D~~WYRA~I~~v~~~~~~~~~~~v~V~fVDYGn~--e~V~~s~Lr~Lp~ 793 (944)
...+++|+.|||+-.. ++.|--|+|+++.. ..++++|.=+|=... -.++.++|-+||.
T Consensus 42 ~~~~~~G~~VAakvk~~~~~~~WILa~Vv~~~~-----~~~rYeV~D~d~eg~~~~~~s~~~IIPLP~ 104 (180)
T 3mea_A 42 DYVARPGDKVAARVKAVDGDEQWILAEVVSYSH-----ATNKYEVDDIDEEGKERHTLSRRRVIPLPQ 104 (180)
T ss_dssp TCCCCTTCEEEEEEECCC--EEEEEEEEEEEET-----TTTEEEEEECCTTCCEEEEEEGGGEEECCS
T ss_pred CcccCCCCEEEEEcCCCCCCccEEEEEEEEEcC-----CCCEEEEecCCCCCceeEEeCHHHEEECCC
Confidence 4578899999999752 35799999999863 578999998885443 3677788888875
No 63
>3mp6_A MBP, SGF29, maltose-binding periplasmic protein, linker, SAGA associated factor 29; histone, tudor domain, histone binding protei; HET: MLY MAL; 1.48A {Escherichia coli} PDB: 3mp1_A* 3mp8_A*
Probab=39.80 E-value=24 Score=40.78 Aligned_cols=85 Identities=14% Similarity=0.219 Sum_probs=54.3
Q ss_pred CCcEEEEEEEEEec-CCeEEEEEcCchhHHHHHHHHHHHHhc--C-CCCC---CCCCCccCCeEEEEEcCCCceEEEEEE
Q 002274 684 QKEVLKVVVTEILG-GGKFYVQQVGDQKVASVQQQLASLNLQ--E-APVI---GAFNPKKGEIVLAQFSADNSWNRAMIV 756 (944)
Q Consensus 684 ~~~~~~V~VT~V~s-p~~FyVQ~~~~~~Le~L~~~L~~~~~~--~-~p~~---~~~~p~~G~lcaA~fs~D~~WYRA~I~ 756 (944)
....+-+.|+.+.. ..++-|+..+.+.-. ++-..+... . .|+| ......+|+.|+|.|.+--++|||.|.
T Consensus 404 ~~~wi~~~~~~~~~~~~~y~v~d~~~~~~~---~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~v~a~~p~tt~fy~a~v~ 480 (522)
T 3mp6_A 404 DGEWIQCEVLKVVADGTRFEVRDPEPDELG---NSGKVYKCNRKELLLIPPGFPTKNYPPGTKVLARYPETTTFYPAIVI 480 (522)
T ss_dssp -CCEEEEEEEEEETTTTEEEEEECSCBTTB---TTCEEEEECGGGEEEECSSCCCCCCCTTCEEEEECTTCSEEEEEEEE
T ss_pred CCCEEEEEEEEEeCCCCEEEEeCCCCCCCC---CCCeeEEccHHHEEECCCCCcccCCCCCCEEEEECCCCcceEeEEEe
Confidence 46788888877775 447888887421000 000011111 0 1111 124578999999999988899999999
Q ss_pred eeccCccccCCCEEEEEEeec
Q 002274 757 NAPREKVESVNDKFEVFYIDY 777 (944)
Q Consensus 757 ~v~~~~~~~~~~~v~V~fVDY 777 (944)
... ..+.+.|+|=|=
T Consensus 481 ~~~------~~~~~~~~f~~~ 495 (522)
T 3mp6_A 481 GTK------RDGTCRLRFDGE 495 (522)
T ss_dssp EEC------TTSCEEEEETTC
T ss_pred cCC------CCCeEEEEecCC
Confidence 975 456799999984
No 64
>2daq_A WHSC1L1 protein, isoform long; PWWP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.2
Probab=39.25 E-value=41 Score=30.50 Aligned_cols=64 Identities=17% Similarity=0.196 Sum_probs=47.7
Q ss_pred CCCccCCeEEEEEcCCCceEEEEEEeecc---C--ccccCCCEEEEEEeecCCeeeecCCCcccCCcccc
Q 002274 732 FNPKKGEIVLAQFSADNSWNRAMIVNAPR---E--KVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLS 796 (944)
Q Consensus 732 ~~p~~G~lcaA~fs~D~~WYRA~I~~v~~---~--~~~~~~~~v~V~fVDYGn~e~V~~s~Lr~Lp~~f~ 796 (944)
..+..|++|-|+.. .--|+=|+|++... + ......+.+.|+|.+-.....|+.++|.++.....
T Consensus 7 ~~~~~GdlVwaK~~-g~p~WPa~V~~~~~~p~~~~~~~~~~~~~~V~FFg~~~~awv~~~~l~p~~~~~~ 75 (110)
T 2daq_A 7 GKLHYKQIVWVKLG-NYRWWPAEICNPRSVPLNIQGLKHDLGDFPVFFFGSHDYYWVHQGRVFPYVEGDK 75 (110)
T ss_dssp CSCCSSEEEEEECS-SSCEEEEEECCTTTSCHHHHTSCCCSSCEEEEETTTTEEEEECSSSSEECCSSCC
T ss_pred CCCCCCCEEEEEeC-CCCCCceeeCChhhCCHHHhhccCCCCcEEEEEecCCCEEEEcHHHCcCcchhhH
Confidence 35789999999974 45699999997621 0 00112467999999988888999999999986544
No 65
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=37.45 E-value=42 Score=29.45 Aligned_cols=39 Identities=21% Similarity=0.330 Sum_probs=32.8
Q ss_pred cceeEEEEEEEEe-CCEEEEecCCCCCCCCCcceEEEEeeccCCC
Q 002274 301 DQNFTGKVVEVVS-GDCIIVADDSIPYGNALAERRVNLSSIRCPK 344 (944)
Q Consensus 301 ~~~~~~~V~~V~~-gD~i~v~~~~~~~~~~~~~~~v~L~~i~~P~ 344 (944)
+..|+|+|.+|.. ++++.|... .||+ ...|.|++|+.+.
T Consensus 25 g~wYrA~I~~i~~~~~~~~V~fi--DYGN---~E~V~~~~Lrp~~ 64 (88)
T 1g5v_A 25 GCIYPATIASIDFKRETCVVVYT--GYGN---REEQNLSDLLSPI 64 (88)
T ss_dssp CCEEEEEEEEEETTTTEEEEEET--TTCC---EEEEEGGGCBCCC
T ss_pred CCEEEEEEEEecCCCCEEEEEEe--cCCC---EEEEcHHHcccCC
Confidence 5789999999986 589999984 4787 7889999999865
No 66
>2yrv_A AT-rich interactive domain-containing protein 4A; ARID domain-containing protein 4A, retinoblastoma-binding protein 1, RBBP-1, structural genomics; NMR {Homo sapiens}
Probab=33.51 E-value=45 Score=30.77 Aligned_cols=95 Identities=12% Similarity=0.187 Sum_probs=64.9
Q ss_pred ccCCeEEEEEcCC-CceEEEEEEeecc-CccccCCCEEEEEEeecCCeeeecCCCcccCCccccC----cccccceeeec
Q 002274 735 KKGEIVLAQFSAD-NSWNRAMIVNAPR-EKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPSLSS----TPPLAQLCSLA 808 (944)
Q Consensus 735 ~~G~lcaA~fs~D-~~WYRA~I~~v~~-~~~~~~~~~v~V~fVDYGn~e~V~~s~Lr~Lp~~f~~----lP~qAi~c~La 808 (944)
-.|.+|++..+.. ..||=|.|+.-.- +.+....+++.|+=.==|-..+|+.++++.|....+. -+-+|++-.|.
T Consensus 12 ~lGkVV~V~~~~kk~~WfPALVVsPs~~d~v~vkKd~~LVRSFkDgKf~sV~rkdv~e~~~~~~~k~d~slK~a~d~A~~ 91 (117)
T 2yrv_A 12 LLGKVVSVVSATERTEWYPALVISPSCNDDITVKKDQCLVRSFIDSKFYSIARKDIKEVDILNLPESELSTKPGLQKASI 91 (117)
T ss_dssp STTSEEEEECSSCSSCEEEEEEECCSSCSSCCCCTTCEEEEESSSCCEEEECTTTEECCCSTTSCHHHHHHCHHHHHHHH
T ss_pred HcCcEEEEecCCCCCceeeeEEECCCCCCCeeeccceEEEEeeccCeEEEEEhHhhhhccccccccCchhHHHHHHHHHH
Confidence 3789999886532 3699999986431 1112245678888666688999999999999755432 12367777777
Q ss_pred ceecCCCCCCCcHHHHHHHhh
Q 002274 809 YIKIPALEDEYGPEAAEFLNE 829 (944)
Q Consensus 809 gV~p~~~~~~ws~eA~~~f~~ 829 (944)
+++--.....|..++.+.|.+
T Consensus 92 fl~~~~lP~~W~~d~~eilds 112 (117)
T 2yrv_A 92 FLKTRVVPDNWKMDISEILES 112 (117)
T ss_dssp HHHTCCCCTTTCCSSHHHHSS
T ss_pred HHhcCCCCCcccchhHhhccc
Confidence 776433345788887777665
No 67
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=32.72 E-value=40 Score=28.73 Aligned_cols=38 Identities=29% Similarity=0.318 Sum_probs=31.1
Q ss_pred cceeEEEEEEEEe-CCEEEEecCCCCCCCCCcceEEEEeeccCC
Q 002274 301 DQNFTGKVVEVVS-GDCIIVADDSIPYGNALAERRVNLSSIRCP 343 (944)
Q Consensus 301 ~~~~~~~V~~V~~-gD~i~v~~~~~~~~~~~~~~~v~L~~i~~P 343 (944)
+..|+|+|.+|.. ++++.|...+ ||+ ...|.+++||.-
T Consensus 32 g~wYRA~I~~i~~~~~~~~V~fvD--YGN---~e~V~~~~Lr~l 70 (77)
T 3pnw_C 32 NKFYRAEVEALHSSGMTAVVKFID--YGN---YEEVLLSNIKPI 70 (77)
T ss_dssp TEEEEEEEEEECTTSSEEEEEETT--TCC---EEEEEGGGEECC
T ss_pred CCEEEEEEEEEeCCCCEEEEEEEc--CCC---eEEEeHHHeEEC
Confidence 5679999999984 6889898844 676 789999999864
No 68
>3qby_A Hepatoma-derived growth factor-related protein 2; HDGF2, structural genomics consortium, SGC, protein binding; HET: M3L; 1.95A {Homo sapiens} SCOP: b.34.9.2 PDB: 3qj6_A* 3eae_A 1n27_A
Probab=32.58 E-value=44 Score=29.55 Aligned_cols=62 Identities=19% Similarity=0.301 Sum_probs=46.4
Q ss_pred CCCccCCeEEEEEcCCCceEEEEEEeeccCccccCCCEEEEEEeecCCeeeecCCCcccCCcc
Q 002274 732 FNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYNKLRPIDPS 794 (944)
Q Consensus 732 ~~p~~G~lcaA~fs~D~~WYRA~I~~v~~~~~~~~~~~v~V~fVDYGn~e~V~~s~Lr~Lp~~ 794 (944)
...++|++|-|+.. .--|-=|+|++...+......+.+.|+|.=-.....|+.++|.++.+.
T Consensus 4 ~~f~~GdlVwaK~~-g~p~WPa~V~~~~~~~~k~~~~~~~V~FFGt~~~awv~~~~l~pf~~~ 65 (94)
T 3qby_A 4 HAFKPGDLVFAKMK-GYPHWPARIDDIADGAVKPPPNKYPIFFFGTHETAFLGPKDLFPYDKC 65 (94)
T ss_dssp CCCCTTCEEEECCT-TSCCEEEEECCCCTTSBCCCTTCEEEEETTTCCEEEECGGGEEEHHHH
T ss_pred CcCccCCEEEEecC-CCCCCCEEEeecccccccCCCCEEEEEEEcCCCcceEchhHeeEHHHH
Confidence 45789999999973 446999999987432222245789999986666778999999998743
No 69
>3mp6_A MBP, SGF29, maltose-binding periplasmic protein, linker, SAGA associated factor 29; histone, tudor domain, histone binding protei; HET: MLY MAL; 1.48A {Escherichia coli} PDB: 3mp1_A* 3mp8_A*
Probab=30.96 E-value=76 Score=36.44 Aligned_cols=80 Identities=20% Similarity=0.054 Sum_probs=53.2
Q ss_pred hhHHHHHHHHHHHHhcCCC---CCCCCCCccCCeEEEE---EcCCCceEEEEEEeeccCccccCCCEEEEEEe--ecC--
Q 002274 709 QKVASVQQQLASLNLQEAP---VIGAFNPKKGEIVLAQ---FSADNSWNRAMIVNAPREKVESVNDKFEVFYI--DYG-- 778 (944)
Q Consensus 709 ~~Le~L~~~L~~~~~~~~p---~~~~~~p~~G~lcaA~---fs~D~~WYRA~I~~v~~~~~~~~~~~v~V~fV--DYG-- 778 (944)
..|+.+.++++.......- .......++|+.|+++ -..++.|--|+|++... ..++++|.=+ |=.
T Consensus 360 eAl~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wi~~~~~~~~~-----~~~~y~v~d~~~~~~~~ 434 (522)
T 3mp6_A 360 EALAAAQTNAAAEFGSSYWTSEYNPNAPILVGSEVAYKPRRGSADGEWIQCEVLKVVA-----DGTRFEVRDPEPDELGN 434 (522)
T ss_dssp HHHHHHHHHTTSCCBCCSCCCSSSCCCCBCTTCEEEECCC-----CCEEEEEEEEEET-----TTTEEEEEECSCBTTBT
T ss_pred HHHHHHHHHHHHHhccCCeeeecccccccCCCCEEEEecCCCCCCCCEEEEEEEEEeC-----CCCEEEEeCCCCCCCCC
Confidence 3466666666554433111 1112347899999997 33467899999999864 5679999988 543
Q ss_pred --CeeeecCCCcccCCc
Q 002274 779 --NQELVPYNKLRPIDP 793 (944)
Q Consensus 779 --n~e~V~~s~Lr~Lp~ 793 (944)
....++.+++-+||+
T Consensus 435 ~~~~~~~~~~~~~~~p~ 451 (522)
T 3mp6_A 435 SGKVYKCNRKELLLIPP 451 (522)
T ss_dssp TCEEEEECGGGEEEECS
T ss_pred CCeeEEccHHHEEECCC
Confidence 356789999999985
No 70
>1khc_A DNA cytosine-5 methyltransferase 3B2; five beta-sheets barrel followed by five-helix bundle; HET: DNA; 1.80A {Mus musculus} SCOP: b.34.9.2 PDB: 3flg_A* 3qkj_A*
Probab=30.49 E-value=73 Score=30.63 Aligned_cols=61 Identities=18% Similarity=0.192 Sum_probs=46.5
Q ss_pred CCCccCCeEEEEEcCCCceEEEEEEeeccCcc-ccCCCEEEEEEeecCCeeeecCCCcccCCc
Q 002274 732 FNPKKGEIVLAQFSADNSWNRAMIVNAPREKV-ESVNDKFEVFYIDYGNQELVPYNKLRPIDP 793 (944)
Q Consensus 732 ~~p~~G~lcaA~fs~D~~WYRA~I~~v~~~~~-~~~~~~v~V~fVDYGn~e~V~~s~Lr~Lp~ 793 (944)
....+|++|-|+.. .--|+-|+|++...... ....+.+.|+|..-+....|+.++|.++..
T Consensus 10 ~~~~~GDlVWaKvk-GyPwWPa~V~~~~~~~~~~~~~~~~~V~FFG~~~~awv~~~~L~p~~~ 71 (147)
T 1khc_A 10 KEFGIGDLVWGKIK-GFSWWPAMVVSWKATSKRQAMPGMRWVQWFGDGKFSEISADKLVALGL 71 (147)
T ss_dssp SSCCTTCEEEEEET-TTEEEEEEEECGGGTTSCCCCTTEEEEEETTTCCEEEEEGGGCEETTS
T ss_pred ccCcCCCEEEEecC-CcCCCCEEeccchhhhcccCCCCeEEEEEecCCCEEEEcHHHCccchH
Confidence 45889999999973 45699999998642100 012478999999888889999999999853
No 71
>3db3_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, tandem tudor domains, LI metal binding, DNA replication; HET: M3L; 2.40A {Homo sapiens} PDB: 3db4_A 2l3r_A*
Probab=29.84 E-value=81 Score=30.66 Aligned_cols=63 Identities=22% Similarity=0.202 Sum_probs=45.2
Q ss_pred CCCCccCCeEEEEEcCCCceEEEEEEeeccCccc-------------cCCCEEEEEEeecCCeeee--cCCCcccCCc
Q 002274 731 AFNPKKGEIVLAQFSADNSWNRAMIVNAPREKVE-------------SVNDKFEVFYIDYGNQELV--PYNKLRPIDP 793 (944)
Q Consensus 731 ~~~p~~G~lcaA~fs~D~~WYRA~I~~v~~~~~~-------------~~~~~v~V~fVDYGn~e~V--~~s~Lr~Lp~ 793 (944)
...-++|+++=|+-...|.|+=|+|+++.+.... ..+-.+.|.|=||....+| +..++|+=-.
T Consensus 8 ~glYKinelVDarD~~~GAWFEA~Iv~Vtr~~~~~~~p~~s~~~~~~~edviYhVkyddype~gvv~~~~~~iRpRAR 85 (161)
T 3db3_A 8 LGLYKVNEYVDARDTNMGAWFEAQVVRVTRKAPSRDEPCSSTSRPALEEDVIYHVKYDDYPENGVVQMNSRDVRARAR 85 (161)
T ss_dssp CCSSCTTCEEEEECTTTCCEEEEEEEEEEEC-----------------CCEEEEEEESSCGGGCEEEEEGGGEECCCC
T ss_pred cceEEecceeeeeccCCCcceEEEEEEEEecCCCCCCcccccccCCCcCceEEEEEeccCccCCeEecchhccccceE
Confidence 3457899999999877899999999998652110 1234689999999887654 5667776543
No 72
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=27.74 E-value=48 Score=28.22 Aligned_cols=39 Identities=28% Similarity=0.352 Sum_probs=32.1
Q ss_pred cceeEEEEEEEEe-CCEEEEecCCCCCCCCCcceEEEEeeccCCC
Q 002274 301 DQNFTGKVVEVVS-GDCIIVADDSIPYGNALAERRVNLSSIRCPK 344 (944)
Q Consensus 301 ~~~~~~~V~~V~~-gD~i~v~~~~~~~~~~~~~~~v~L~~i~~P~ 344 (944)
++.|+|+|.+|.. ++++.|... .||+ ...|.+++||.-.
T Consensus 24 g~wYRA~I~~i~~~~~~~~V~fi--DYGN---~e~V~~~~Lr~l~ 63 (78)
T 2d9t_A 24 NKFYRAEVEALHSSGMTAVVKFT--DYGN---YEEVLLSNIKPVQ 63 (78)
T ss_dssp CCEEEEEEEEECSSSSEEEEEET--TTTE---EEEEEGGGEEECC
T ss_pred CCEEEEEEEEEeCCCCEEEEEEE--cCCC---eEEEcHHHeEeCC
Confidence 5789999999986 688999984 4776 7899999998654
No 73
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=26.98 E-value=1.9e+02 Score=29.47 Aligned_cols=49 Identities=10% Similarity=0.292 Sum_probs=40.8
Q ss_pred CCCCCCccCCeEEEEEcCCCceEEEEEEeeccCccccCCCEEEEEEeecCCeeeecCC
Q 002274 729 IGAFNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQELVPYN 786 (944)
Q Consensus 729 ~~~~~p~~G~lcaA~fs~D~~WYRA~I~~v~~~~~~~~~~~v~V~fVDYGn~e~V~~s 786 (944)
.+....++|+...... ++.|.+|+|++++ ...++|+|-|==.+|.+-.-
T Consensus 154 rpmv~~~~GQ~i~~E~--~g~w~~~~V~~vD-------~SLv~v~f~~dkr~EWIYRG 202 (213)
T 3dlm_A 154 RPMVLLKSGQLIKTEW--EGTWWKSRVEEVD-------GSLVRILFLDDKRCEWIYRG 202 (213)
T ss_dssp CCCCCCCTTCEEEEEE--TTEEEEEEEEEEE-------TTEEEEEETTTTEEEEEETT
T ss_pred CceEEcCCCCEEEEEe--cCcEEEEEEEEEc-------ceeEEEEEcCCCeeEEEEcC
Confidence 3456789999999876 8999999999994 67999999987788887643
No 74
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=25.55 E-value=85 Score=25.52 Aligned_cols=38 Identities=16% Similarity=0.262 Sum_probs=30.8
Q ss_pred cceeEEEEEEEEe-CCEEEEecCCCCCCCCCcceEEEEeeccCC
Q 002274 301 DQNFTGKVVEVVS-GDCIIVADDSIPYGNALAERRVNLSSIRCP 343 (944)
Q Consensus 301 ~~~~~~~V~~V~~-gD~i~v~~~~~~~~~~~~~~~v~L~~i~~P 343 (944)
++.|+|+|.+|.+ .+++.|...+ ||+ ...|.+++||.-
T Consensus 23 g~wYrA~I~~v~~~~~~~~V~fvd--YGn---~e~V~~~~Lrpl 61 (64)
T 4a4f_A 23 GQCYEAEIEEIDEENGTAAITFAG--YGN---AEVTPLLNLKPV 61 (64)
T ss_dssp SSEEEEEEEEEETTTTEEEEEETT--TTE---EEEEEGGGEECC
T ss_pred CCEEEEEEEEEcCCCCEEEEEEEe--cCC---EEEEeHHHcEeC
Confidence 5679999999997 5788888844 676 788999999864
No 75
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A
Probab=23.54 E-value=99 Score=28.67 Aligned_cols=40 Identities=15% Similarity=0.129 Sum_probs=32.0
Q ss_pred HHHHhhhcCCcee--EEEEEEe-cCCEEEEEEcCCceEEEEEEe
Q 002274 101 MALLDANKGRPMQ--GIVEQAR-DGSTLRVYLLPEFQFVQVFVA 141 (944)
Q Consensus 101 ~~~~~~~k~~~~~--a~Ve~V~-DGdt~~v~l~~~~~~~~v~la 141 (944)
.++|..+.|+++. ++|+++. ||+++.+. .+++..++|.|.
T Consensus 14 ~s~L~~fvgk~VrivGkV~~~~~~g~~~~l~-s~Dg~~Vtv~l~ 56 (121)
T 3kdf_A 14 AGMLAQFIDKPVCFVGRLEKIHPTGKMFILS-DGEGKNGTIELM 56 (121)
T ss_dssp GGGGGGGTTCEEEEEEEEEEECTTSSEEEEE-CTTSCEEEEECS
T ss_pred HHHHHhhCCCeEEEEEEEEEEcCCCCEEEEE-eCCCCEEEEEeC
Confidence 4678888899765 6899998 89999987 457788898873
No 76
>3pmi_A PWWP domain-containing protein MUM1; structural genomics consortium, SGC, protein binding, nucLeu; HET: UNL; 2.82A {Homo sapiens}
Probab=22.16 E-value=94 Score=29.02 Aligned_cols=56 Identities=18% Similarity=0.194 Sum_probs=42.9
Q ss_pred CCCccCCeEEEEEcCCCceEEEEEEeeccCccccCCCEEEEEEeecCCe-----eeecCCCcccCCc
Q 002274 732 FNPKKGEIVLAQFSADNSWNRAMIVNAPREKVESVNDKFEVFYIDYGNQ-----ELVPYNKLRPIDP 793 (944)
Q Consensus 732 ~~p~~G~lcaA~fs~D~~WYRA~I~~v~~~~~~~~~~~v~V~fVDYGn~-----e~V~~s~Lr~Lp~ 793 (944)
..+..|.++=.+|. +--+.=|.|.++.+ .+.++.|+|||=-.. -.|++..|++++-
T Consensus 3 ~~~e~GmlVW~K~q-~yPfWPAVVKSV~r-----~ekkA~VL~Ie~~m~~ekrGi~V~LrrLK~fDC 63 (134)
T 3pmi_A 3 RSFEVGMLVWHKHK-KYPFWPAVVKSVRQ-----RDKKASVLYIEGHMNPKMKGFTVSLKSLKHFDC 63 (134)
T ss_dssp -CCCTTCEEEECCT-TSCCEEEEEEEEEG-----GGTEEEEEECCSSCCTTSCCEEEEGGGCEETTS
T ss_pred cccccceEEEEEec-cCCCcchheeeeee-----ccceEEEEEEeCCCCcccCceEeEcccCCCCCh
Confidence 35788999999994 66677888999875 689999999994332 2578888888863
No 77
>1h3z_A Hypothetical 62.8 kDa protein C215.07C; nuclear protein, PWWP, chromatin, beta-barrel; NMR {Schizosaccharomyces pombe} SCOP: b.34.9.2
Probab=21.80 E-value=1.3e+02 Score=27.04 Aligned_cols=61 Identities=20% Similarity=0.292 Sum_probs=44.8
Q ss_pred CCCccCCeEEEEEcCCCceEEEEEEee---ccCcc--c--cCCCEEEEEEeecCCeeeecCCCcccCCc
Q 002274 732 FNPKKGEIVLAQFSADNSWNRAMIVNA---PREKV--E--SVNDKFEVFYIDYGNQELVPYNKLRPIDP 793 (944)
Q Consensus 732 ~~p~~G~lcaA~fs~D~~WYRA~I~~v---~~~~~--~--~~~~~v~V~fVDYGn~e~V~~s~Lr~Lp~ 793 (944)
.....|++|-|+.. .--|+=|+|++- ..... . ...+.+.|+|.+-.....|+.++|.++..
T Consensus 5 ~~~~~GdlVwaK~~-gyP~WPa~V~~p~~~~~~~~~~~~~~~~~~~~V~FFg~~~~aWv~~~~l~p~~~ 72 (109)
T 1h3z_A 5 VNYKPGMRVLTKMS-GFPWWPSMVVTESKMTSVARKSKPKRAGTFYPVIFFPNKEYLWTGSDSLTPLTS 72 (109)
T ss_dssp CCCCTTCEEEEEET-TEEEEEEEECCGGGCCHHHHHTCCCSSSCEEEEEETTTTCCEEEEGGGEEECCH
T ss_pred ccCCCCCEEEEEeC-CcCCCCEEEcccHHHhHHhhccCCCCCCCEEEEEEcCCCCEEEECHHHeeeCCc
Confidence 35789999999982 446999999942 10000 0 02578999999888888999999999974
No 78
>2l89_A PWWP domain-containing protein 1; histone binding, protein binding; NMR {Schizosaccharomyces pombe}
Probab=21.33 E-value=86 Score=28.35 Aligned_cols=60 Identities=18% Similarity=0.275 Sum_probs=44.0
Q ss_pred CCccCCeEEEEEcCCCceEEEEEEeecc---Ccc--ccCCCEEEEEEeecCCeeeecCCCcccCCc
Q 002274 733 NPKKGEIVLAQFSADNSWNRAMIVNAPR---EKV--ESVNDKFEVFYIDYGNQELVPYNKLRPIDP 793 (944)
Q Consensus 733 ~p~~G~lcaA~fs~D~~WYRA~I~~v~~---~~~--~~~~~~v~V~fVDYGn~e~V~~s~Lr~Lp~ 793 (944)
..+.|++|.|+.. .--|+-|+|+.... ... ....+.+.|+|.+-.....|+.++|.++..
T Consensus 5 ~~~~GdlVwaK~~-gyP~WPa~V~~~~~~p~~v~~~~~~~~~~~V~FFg~~~~aWv~~~~l~p~~~ 69 (108)
T 2l89_A 5 RLNFGDRILVKAP-GYPWWPALLLRRKETKDSLNTNSSFNVLYKVLFFPDFNFAWVKRNSVKPLLD 69 (108)
T ss_dssp CCCTTEEEEEECS-SSCEEEEEEEEEEEEESSSCSSSCEEEEEEEEETTTTEEEEECGGGEEECCH
T ss_pred cccCCCEEEEEeC-CcCCCceEecCcccCcHHHhhccCCCCeEEEEECCCCCEEEEchhhceeCCH
Confidence 5789999999963 34599999986320 000 012467999999877778899999999985
Done!