BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002276
(943 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 229 bits (585), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 139/334 (41%), Positives = 182/334 (54%), Gaps = 53/334 (15%)
Query: 362 KGNIRVFCRCRPLNSEET-AAGSVMAVDFESVRDGELTVISNGAPKKTFKFDAVFGPQAD 420
KGNIRV R RP+ E+ + AV F++ D + ++ G P +F+ D VF PQA
Sbjct: 3 KGNIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHKGKPV-SFELDKVFSPQAS 61
Query: 421 QVDVFQDTAPFANSVLDGYNVCIFAYGQTGTGKTFTMEGTKEARGVNFRTLEELFRIIKE 480
Q DVFQ+ S +DG+NVCIFAYGQTG GKT+TMEGT E G+N R L+ LF ++E
Sbjct: 62 QQDVFQEVQALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSEVQE 121
Query: 481 REKLYRYDISVSVLEVYNEQIRDLLAVGSQPGAVSKRLEVRQA--GEGMHHVPGLVEAHV 538
+ + Y I+VS E+YNE +RDLL G +P ++LE+R G G +VPGL E V
Sbjct: 122 KASDWEYTITVSAAEIYNEVLRDLL--GKEP---QEKLEIRLCPDGSGQLYVPGLTEFQV 176
Query: 539 NNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRRELVEWGMHKEQAM----AS 594
++ ++ +V + G R TN NEHSSRSH + V VR G+ + +
Sbjct: 177 QSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLVDLA 236
Query: 595 GSSR----------------------------------------KNSKLTHLLQDSLGGD 614
GS R +NSKLT+LLQDSL GD
Sbjct: 237 GSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGD 296
Query: 615 SKTLMFVQISPNENDLSETLCSLNFASRVRGIEL 648
SKTLM VQ+SP E + SETL SL FA RVR +EL
Sbjct: 297 SKTLMVVQVSPVEKNTSETLYSLKFAERVRSVEL 330
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 198 bits (503), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 136/370 (36%), Positives = 187/370 (50%), Gaps = 68/370 (18%)
Query: 338 EHLKIKFIEGTKERKELYNKVLELKGNIRVFCRCRP-LNSEETAAGSVMAVDFESVRDGE 396
E K + + ERKEL+N V++L+GNIRVFCR RP L SEE ES E
Sbjct: 42 ETCKEQLFQSNMERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDEST--VE 99
Query: 397 LTVISNGAPKK----TFKFDAVFGPQADQVDVFQDTAPFANSVLDGYNVCIFAYGQTGTG 452
L I A K F FD VF P + Q D+F+ +P S LDGYN+CIFAYGQTG+G
Sbjct: 100 LQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSG 159
Query: 453 KTFTMEGTKEARGVNFRTLEELFRIIKEREKL-YRYDISVSVLEVYNEQIRDLLAVGSQP 511
KT+TM+G E+ GV RT++ LF I+ L + Y+I + LE+YNE + DLL+
Sbjct: 160 KTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLS----- 214
Query: 512 GAVSKRLEVRQAGEGMH--HVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRS 569
K +E+R A + +V + E V + + + ++ T RA ST NE SSRS
Sbjct: 215 -NEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRS 273
Query: 570 HCMHCVMVRRELVEWGMHKE-QAMASGS-------------------------------- 596
H + + EL+ G H E Q ++ GS
Sbjct: 274 H----AVTKLELI--GRHAEKQEISVGSINLVDLAGSESPKTSTRMTETKNINRSLSELT 327
Query: 597 -------------SRKNSKLTHLLQDSLGGDSKTLMFVQISPNENDLSETLCSLNFASRV 643
+NSKLTHLL SLGG+SKTLMF+ +SP ++ E++ SL FA+ V
Sbjct: 328 NVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASV 387
Query: 644 RGIELGAAKK 653
++ AK+
Sbjct: 388 NSCKMTKAKR 397
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 198 bits (503), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 136/370 (36%), Positives = 187/370 (50%), Gaps = 68/370 (18%)
Query: 338 EHLKIKFIEGTKERKELYNKVLELKGNIRVFCRCRP-LNSEETAAGSVMAVDFESVRDGE 396
E K + + ERKEL+N V++L+GNIRVFCR RP L SEE ES E
Sbjct: 28 ETCKEQLFQSNMERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTV--E 85
Query: 397 LTVISNGAPKK----TFKFDAVFGPQADQVDVFQDTAPFANSVLDGYNVCIFAYGQTGTG 452
L I A K F FD VF P + Q D+F+ +P S LDGYN+CIFAYGQTG+G
Sbjct: 86 LQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSG 145
Query: 453 KTFTMEGTKEARGVNFRTLEELFRIIKEREKL-YRYDISVSVLEVYNEQIRDLLAVGSQP 511
KT+TM+G E+ GV RT++ LF I+ L + Y+I + LE+YNE + DLL+
Sbjct: 146 KTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLS----- 200
Query: 512 GAVSKRLEVRQAGEGMH--HVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRS 569
K +E+R A + +V + E V + + + ++ T RA ST NE SSRS
Sbjct: 201 -NEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRS 259
Query: 570 HCMHCVMVRRELVEWGMHKE-QAMASGS-------------------------------- 596
H + + EL+ G H E Q ++ GS
Sbjct: 260 H----AVTKLELI--GRHAEKQEISVGSINLVDLAGSESPKTSTRMTETKNINRSLSELT 313
Query: 597 -------------SRKNSKLTHLLQDSLGGDSKTLMFVQISPNENDLSETLCSLNFASRV 643
+NSKLTHLL SLGG+SKTLMF+ +SP ++ E++ SL FA+ V
Sbjct: 314 NVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASV 373
Query: 644 RGIELGAAKK 653
++ AK+
Sbjct: 374 NSCKMTKAKR 383
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 197 bits (502), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 136/370 (36%), Positives = 187/370 (50%), Gaps = 68/370 (18%)
Query: 338 EHLKIKFIEGTKERKELYNKVLELKGNIRVFCRCRP-LNSEETAAGSVMAVDFESVRDGE 396
E K + + ERKEL+N V++L+GNIRVFCR RP L SEE ES E
Sbjct: 31 ETCKEQLFQSNMERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDEST--VE 88
Query: 397 LTVISNGAPKK----TFKFDAVFGPQADQVDVFQDTAPFANSVLDGYNVCIFAYGQTGTG 452
L I A K F FD VF P + Q D+F+ +P S LDGYN+CIFAYGQTG+G
Sbjct: 89 LQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSG 148
Query: 453 KTFTMEGTKEARGVNFRTLEELFRIIKEREKL-YRYDISVSVLEVYNEQIRDLLAVGSQP 511
KT+TM+G E+ GV RT++ LF I+ L + Y+I + LE+YNE + DLL+
Sbjct: 149 KTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLS----- 203
Query: 512 GAVSKRLEVRQAGEGMH--HVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRS 569
K +E+R A + +V + E V + + + ++ T RA ST NE SSRS
Sbjct: 204 -NEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRS 262
Query: 570 HCMHCVMVRRELVEWGMHKE-QAMASGS-------------------------------- 596
H + + EL+ G H E Q ++ GS
Sbjct: 263 H----AVTKLELI--GRHAEKQEISVGSINLVDLAGSESPKTSTRMTETKNIKRSLSELT 316
Query: 597 -------------SRKNSKLTHLLQDSLGGDSKTLMFVQISPNENDLSETLCSLNFASRV 643
+NSKLTHLL SLGG+SKTLMF+ +SP ++ E++ SL FA+ V
Sbjct: 317 NVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASV 376
Query: 644 RGIELGAAKK 653
++ AK+
Sbjct: 377 NSCKMTKAKR 386
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 197 bits (502), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 129/372 (34%), Positives = 196/372 (52%), Gaps = 60/372 (16%)
Query: 351 RKELYNKVLELKGNIRVFCRCRPLNSEETAAGS---VMAVDFESVRDGELTVIS--NGAP 405
RK YN + ++KG IRV+CR RPLN +E++ + VD E TV
Sbjct: 1 RKRYYNTIEDMKGKIRVYCRIRPLNEKESSEREKQMLTTVD-------EFTVEHPWKDDK 53
Query: 406 KKTFKFDAVFGPQADQVDVFQDTAPFANSVLDGYNVCIFAYGQTGTGKTFTMEGTKEARG 465
+K +D VF +A Q D+F+DT S +DGYNVCIFAYGQTG+GKTFT+ G + G
Sbjct: 54 RKQHIYDRVFDMRASQDDIFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGHESNPG 113
Query: 466 VNFRTLEELFRIIKEREKLYRYDISVSVLEVYNEQIRDLLAVGSQPGAVSKRLEVRQAGE 525
+ R +ELF I+K K + + + ++E+Y + + DLL S A +LE+++ +
Sbjct: 114 LTPRATKELFNILKRDSKRFSFSLKAYMVELYQDTLVDLLLPKS---ARRLKLEIKKDSK 170
Query: 526 GMHHVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMV-------- 577
GM V + ++ + E+ +L+ GS R V TN NE SSRSH + V++
Sbjct: 171 GMVFVENVTTIPISTLEELRMILERGSERRHVSGTNMNEESSRSHLILSVVIESIDLQTQ 230
Query: 578 -----RRELVEWG--------------MHKEQ--------------AMASGSSR---KNS 601
+ V+ + + Q A++SG+ +N
Sbjct: 231 SAARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVIGALSSGNQHIPYRNH 290
Query: 602 KLTHLLQDSLGGDSKTLMFVQISPNENDLSETLCSLNFASRVRGIELGAAKKQLDTSELL 661
KLT L+ DSLGG++KTLMFV +SP E++L ET SL +ASRVR I + K + + E++
Sbjct: 291 KLTMLMSDSLGGNAKTLMFVNVSPAESNLDETYNSLLYASRVRTI-VNDPSKHISSKEMV 349
Query: 662 RYKQMVEKTKQE 673
R K++V K++
Sbjct: 350 RLKKLVAYWKEQ 361
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 195 bits (495), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 135/370 (36%), Positives = 186/370 (50%), Gaps = 68/370 (18%)
Query: 338 EHLKIKFIEGTKERKELYNKVLELKGNIRVFCRCRP-LNSEETAAGSVMAVDFESVRDGE 396
E K + + ERKEL+N V++L+ NIRVFCR RP L SEE ES E
Sbjct: 34 ETCKEQLFQSNMERKELHNTVMDLRDNIRVFCRIRPPLESEENRMCCTWTYHDESTV--E 91
Query: 397 LTVISNGAPKK----TFKFDAVFGPQADQVDVFQDTAPFANSVLDGYNVCIFAYGQTGTG 452
L I A K F FD VF P + Q D+F+ +P S LDGYN+CIFAYGQTG+G
Sbjct: 92 LQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSG 151
Query: 453 KTFTMEGTKEARGVNFRTLEELFRIIKEREKL-YRYDISVSVLEVYNEQIRDLLAVGSQP 511
KT+TM+G E+ GV RT++ LF I+ L + Y+I + LE+YNE + DLL+
Sbjct: 152 KTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLS----- 206
Query: 512 GAVSKRLEVRQAGEGMH--HVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRS 569
K +E+R A + +V + E V + + + ++ T RA ST NE SSRS
Sbjct: 207 -NEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRS 265
Query: 570 HCMHCVMVRRELVEWGMHKE-QAMASGS-------------------------------- 596
H + + EL+ G H E Q ++ GS
Sbjct: 266 H----AVTKLELI--GRHAEKQEISVGSINLVDLAGSESPKTSTRMTETKNINRSLSELT 319
Query: 597 -------------SRKNSKLTHLLQDSLGGDSKTLMFVQISPNENDLSETLCSLNFASRV 643
+NSKLTHLL SLGG+SKTLMF+ +SP ++ E++ SL FA+ V
Sbjct: 320 NVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASV 379
Query: 644 RGIELGAAKK 653
++ AK+
Sbjct: 380 NSCKMTKAKR 389
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 193 bits (490), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 133/365 (36%), Positives = 184/365 (50%), Gaps = 68/365 (18%)
Query: 338 EHLKIKFIEGTKERKELYNKVLELKGNIRVFCRCRP-LNSEETAAGSVMAVDFESVRDGE 396
E K + + ERKEL+N V++L+GNIRVFCR RP L SEE ES E
Sbjct: 31 ETCKEQLFQSNMERKELHNTVMDLRGNIRVFCRIRPPLESEENRMCCTWTYHDESTV--E 88
Query: 397 LTVISNGAPKK----TFKFDAVFGPQADQVDVFQDTAPFANSVLDGYNVCIFAYGQTGTG 452
L I A K F FD VF P + Q D+F+ +P S LDGYN+CIFAYGQ+G+G
Sbjct: 89 LQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQSGSG 148
Query: 453 KTFTMEGTKEARGVNFRTLEELFRIIKEREKL-YRYDISVSVLEVYNEQIRDLLAVGSQP 511
KT+TM+G E+ GV RT++ LF I+ L + Y+I + LE+YNE + DLL+
Sbjct: 149 KTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLS----- 203
Query: 512 GAVSKRLEVRQAGEGMH--HVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRS 569
K +E+R A + +V + E V + + + ++ T RA ST NE SSRS
Sbjct: 204 -NEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRS 262
Query: 570 HCMHCVMVRRELVEWGMHKE-QAMASGS-------------------------------- 596
H + + EL+ G H E Q ++ GS
Sbjct: 263 H----AVTKLELI--GRHAEKQEISVGSINLVDLAGSESPKTSTRMTETKNINRSLSELT 316
Query: 597 -------------SRKNSKLTHLLQDSLGGDSKTLMFVQISPNENDLSETLCSLNFASRV 643
+NSKLTHLL SLGG+SKTLMF+ +SP ++ E++ SL FA+ V
Sbjct: 317 NVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASV 376
Query: 644 RGIEL 648
++
Sbjct: 377 NSCKM 381
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 184 bits (466), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 120/359 (33%), Positives = 182/359 (50%), Gaps = 52/359 (14%)
Query: 360 ELKGNIRVFCRCRPLNSEETAAGSVMAVDFESVRDGELTVISNGAPKKTFKFDAVFGPQA 419
++KG IRV+CR RPL +E A A+ SV + + + K +D VF A
Sbjct: 2 DMKGKIRVYCRLRPLCEKEIIAKERNAI--RSVDEFTVEHLWKDDKAKQHMYDRVFDGNA 59
Query: 420 DQVDVFQDTAPFANSVLDGYNVCIFAYGQTGTGKTFTMEGTKEARGVNFRTLEELFRIIK 479
Q DVF+DT S +DGYNVCIFAYGQTG+GKTFT+ G G+ R + ELFRI+K
Sbjct: 60 TQDDVFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMK 119
Query: 480 EREKLYRYDISVSVLEVYNEQIRDLLAVGSQPGAVSK-RLEVRQAGEGMHHVPGLVEAHV 538
+ + + + ++E+Y + + DLL P + +L++++ +GM V + +
Sbjct: 120 KDSNKFSFSLKAYMVELYQDTLVDLLL----PKQAKRLKLDIKKDSKGMVSVENVTVVSI 175
Query: 539 NNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMV-------------RRELVEWG 585
+ E+ ++Q GS R T NE SSRSH + V++ + V+
Sbjct: 176 STYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIARGKLSFVDLA 235
Query: 586 MHKE----------------------------QAMASGSSR---KNSKLTHLLQDSLGGD 614
+ A++SG+ +N KLT L+ DSLGG+
Sbjct: 236 GSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMSDSLGGN 295
Query: 615 SKTLMFVQISPNENDLSETLCSLNFASRVRGIELGAAKKQLDTSELLRYKQMVEKTKQE 673
+KTLMFV ISP E++L ET SL +ASRVR I + K + + E+ R K++V K++
Sbjct: 296 AKTLMFVNISPAESNLDETHNSLTYASRVRSI-VNDPSKNVSSKEVARLKKLVSYWKEQ 353
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 181 bits (458), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 128/359 (35%), Positives = 181/359 (50%), Gaps = 59/359 (16%)
Query: 351 RKELYNKVLELKGNIRVFCRCRP-LNSEETAAGSVMAV----DFESVRDGELTVISNGAP 405
R+ L+N++ EL+GNIRV+CR RP L + E + S++ V D V+ E+T I N A
Sbjct: 2 RRTLHNELQELRGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQ 61
Query: 406 KKTFKFDAVFGPQADQVDVFQDTAPFANSVLDGYNVCIFAYGQTGTGKTFTMEGTKEARG 465
FKFD +F Q VDVF++ S LDGYNVCIFAYGQTG+GKTFTM G
Sbjct: 62 VHEFKFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTM--LNPGDG 119
Query: 466 VNFRTLEELFRII-KEREKLYRYDISVSVLEVYNEQIRDLLAVGS---QPGAVSKRLEVR 521
+ T+ +F I K + K + Y ++ +E+YNE I DLL + + ++ + E+R
Sbjct: 120 IIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIR 179
Query: 522 QAGEGMHHVPGLVEAHVNNISEVWE-VLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRRE 580
E V + E+ E +L+ + +R+ ST +NEHSSRSH + + +
Sbjct: 180 HDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGS 239
Query: 581 LVEWGMHKEQAM----ASGSSR-------------------------------------- 598
+ G H + +GS R
Sbjct: 240 NAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTK 299
Query: 599 -----KNSKLTHLLQDSLGGDSKTLMFVQISPNENDLSETLCSLNFASRVRGIELGAAK 652
+NSKLT+LLQ SL GDSKTLMFV ISP+ + ++ETL SL FAS+V L + K
Sbjct: 300 RHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVSRK 358
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 176 bits (447), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 134/399 (33%), Positives = 194/399 (48%), Gaps = 59/399 (14%)
Query: 311 AYKKCAAEISEASSTIQSKINHQVQLYEHLKIKFIEGTKERKELYNKVLELKGNIRVFCR 370
A K+ A + E + ++ KI + L I+ R+ L+N++ EL+GNIRV+ R
Sbjct: 7 ALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNIRVYLR 66
Query: 371 CRP-LNSEETAAGSVMAV----DFESVRDGELTVISNGAPKKTFKFDAVFGPQADQVDVF 425
RP L + E + S++ V D V+ E+T I N A FKFD +F Q VDVF
Sbjct: 67 IRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVF 126
Query: 426 QDTAPFANSVLDGYNVCIFAYGQTGTGKTFTMEGTKEARGVNFRTLEELFRII-KEREKL 484
++ S LDGYNV IFAYGQTG+GKTFTM G+ T+ +F I K + K
Sbjct: 127 KEVGQLVQSSLDGYNVAIFAYGQTGSGKTFTM--LNPGDGIIPSTISHIFNWINKLKTKG 184
Query: 485 YRYDISVSVLEVYNEQIRDLLAVGS---QPGAVSKRLEVRQAGEGMHHVPGLVEAHVNNI 541
+ Y ++ +E+YNE I DLL + + ++ + E+R E V +
Sbjct: 185 WDYKVNAEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTSVKLES 244
Query: 542 SEVWE-VLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRRELVEWGMHKEQAM----ASGS 596
E+ E +L+ + +R+ ST +NEHSSRSH + + + + G H + +GS
Sbjct: 245 EEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYGTLNLVDLAGS 304
Query: 597 SR-------------------------------------------KNSKLTHLLQDSLGG 613
R +NSKLT+LLQ SL G
Sbjct: 305 ERINVSQVVGDRLRETQNINKSLSALGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTG 364
Query: 614 DSKTLMFVQISPNENDLSETLCSLNFASRVRGIELGAAK 652
DSKTLMFV ISP+ + ++ETL SL FAS+V L + K
Sbjct: 365 DSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVSRK 403
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 176 bits (445), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 127/356 (35%), Positives = 170/356 (47%), Gaps = 75/356 (21%)
Query: 361 LKGNIRVFCRCRP-LNSEETAAGSVM----------------AVDFESVRDGELTVISNG 403
LKGNIRVFCR RP L E T ++ ++ R G L+
Sbjct: 20 LKGNIRVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAP 79
Query: 404 APKKTFKFDAVFGPQADQVDVFQDTAPFANSVLDGYNVCIFAYGQTGTGKTFTMEGT--- 460
P+ F FD VF P + Q +VF++ A S LDGY VCIFAYGQTG+GKTFTMEG
Sbjct: 80 PPRHDFSFDRVFPPGSGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGG 139
Query: 461 -KEARGVNFRTLEELFRIIKERE-KLYRYDISVSVLEVYNEQIRDLLAVGSQPGAVSKRL 518
+ G+ R L LF + +E + + Y S +E+YNE +RDLLA G++ G
Sbjct: 140 DPQLEGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIYNETVRDLLATGTRKGQ-GGEC 198
Query: 519 EVRQAGEGMHHVPGLVEAHVNNIS---EVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCV 575
E+R+AG G + + A +S EV +L RAV T NE SSRSH + +
Sbjct: 199 EIRRAGPGSEEL-TVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERSSRSHSVFQL 257
Query: 576 MVRRELVEWGMHKEQAMA----SGSSR--------------------------------- 598
+ E G+ ++ +GS R
Sbjct: 258 QISGEHSSRGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIM 317
Query: 599 -----------KNSKLTHLLQDSLGGDSKTLMFVQISPNENDLSETLCSLNFASRV 643
+NSKLT+LLQ+SLGG +K LMFV ISP E ++SE+L SL FAS+V
Sbjct: 318 ALSNKESHVPYRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKV 373
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 174 bits (441), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 119/344 (34%), Positives = 177/344 (51%), Gaps = 73/344 (21%)
Query: 365 IRVFCRCRPLNSEETAAGSVMAVDFESVRDGELTVISNGAPK-------KTFKFDAVFGP 417
+RV RCRP+N +E AA VD + V+ G+++V + PK KTF FDAV+
Sbjct: 23 VRVVVRCRPMNGKEKAASYDKVVDVD-VKLGQVSVKN---PKGTAHEMPKTFTFDAVYDW 78
Query: 418 QADQVDVFQDTA-PFANSVLDGYNVCIFAYGQTGTGKTFTMEGTK---EARGVNFRTLEE 473
A Q +++ +T P +SVL G+N IFAYGQTGTGKT+TMEG + E RGV + +
Sbjct: 79 NAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDH 138
Query: 474 LFRIIKEREKLYRYDISVSVLEVYNEQIRDLLAVGSQPGAVSKRLEVRQAGEGMHHVPGL 533
+F I R + +Y + S LE+Y E+IRDLL+ +KRLE+++ + +V L
Sbjct: 139 IFTHI-SRSQNQQYLVRASYLEIYQEEIRDLLSKDQ-----TKRLELKERPDTGVYVKDL 192
Query: 534 VEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRRELVEWGMHKEQ--- 590
++ E+ V+ G+ R+VG+TN NEHSSRSH + + + E E G+ E
Sbjct: 193 SSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITI--ECSEVGLDGENHIR 250
Query: 591 -------------------------------------------AMASGSSR----KNSKL 603
A+ G S ++SKL
Sbjct: 251 VGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKL 310
Query: 604 THLLQDSLGGDSKTLMFVQISPNENDLSETLCSLNFASRVRGIE 647
T LLQDSLGG++KT+M + P ++ ETL +L +A+R + I+
Sbjct: 311 TRLLQDSLGGNAKTVMVANVGPASYNVEETLTTLRYANRAKNIK 354
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 172 bits (435), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 123/349 (35%), Positives = 174/349 (49%), Gaps = 59/349 (16%)
Query: 361 LKGNIRVFCRCRP-LNSEETAAGSVMAV----DFESVRDGELTVISNGAPKKTFKFDAVF 415
++GNIRV+CR RP L + E + S++ V D V+ E+T I N A FKFD +F
Sbjct: 1 MRGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIF 60
Query: 416 GPQADQVDVFQDTAPFANSVLDGYNVCIFAYGQTGTGKTFTMEGTKEARGVNFRTLEELF 475
Q VDVF++ S LDGYNVCIFAYGQTG+GKTFTM G+ T+ +F
Sbjct: 61 DQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTM--LNPGDGIIPSTISHIF 118
Query: 476 RII-KEREKLYRYDISVSVLEVYNEQIRDLLAVGS---QPGAVSKRLEVRQAGEGMHHVP 531
I K + K + Y ++ +E+YNE I DLL + + ++ + E+R E
Sbjct: 119 NWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTI 178
Query: 532 GLVEAHVNNISEVWE-VLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRRELVEWGMHKEQ 590
V + E+ E +L+ + +R+ ST +NEHSSRSH + + + + G H
Sbjct: 179 TNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYG 238
Query: 591 AM----ASGSSR-------------------------------------------KNSKL 603
+ +GS+R +NSKL
Sbjct: 239 TLNLVDLAGSARINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKL 298
Query: 604 THLLQDSLGGDSKTLMFVQISPNENDLSETLCSLNFASRVRGIELGAAK 652
T+LLQ SL GDSKTLMFV ISP+ + ++ETL SL FAS+V L + K
Sbjct: 299 TYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVSRK 347
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 171 bits (434), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 123/349 (35%), Positives = 173/349 (49%), Gaps = 59/349 (16%)
Query: 361 LKGNIRVFCRCRP-LNSEETAAGSVMAV----DFESVRDGELTVISNGAPKKTFKFDAVF 415
++GNIRV+CR RP L + E + S++ V D V+ E+T I N A FKFD +F
Sbjct: 1 MRGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIF 60
Query: 416 GPQADQVDVFQDTAPFANSVLDGYNVCIFAYGQTGTGKTFTMEGTKEARGVNFRTLEELF 475
Q VDVF++ S LDGYNVCIFAYGQTG+GKTFTM G+ T+ +F
Sbjct: 61 DQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTM--LNPGDGIIPSTISHIF 118
Query: 476 RII-KEREKLYRYDISVSVLEVYNEQIRDLLAVGS---QPGAVSKRLEVRQAGEGMHHVP 531
I K + K + Y ++ +E+YNE I DLL + + ++ + E+R E
Sbjct: 119 NWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTI 178
Query: 532 GLVEAHVNNISEVWE-VLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRRELVEWGMHKEQ 590
V + E+ E +L+ + +R+ ST +NEHSSRSH + + + + G H
Sbjct: 179 TNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYG 238
Query: 591 AM----ASGSSR-------------------------------------------KNSKL 603
+ +GS R +NSKL
Sbjct: 239 TLNLVDLAGSERINVSQVVGDRLRETQNIKKSLSCLGDVIHALGQPDSTKRHIPFRNSKL 298
Query: 604 THLLQDSLGGDSKTLMFVQISPNENDLSETLCSLNFASRVRGIELGAAK 652
T+LLQ SL GDSKTLMFV ISP+ + ++ETL SL FAS+V L + K
Sbjct: 299 TYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVSRK 347
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 170 bits (430), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 123/347 (35%), Positives = 171/347 (49%), Gaps = 59/347 (17%)
Query: 363 GNIRVFCRCRP-LNSEETAAGSVMAV----DFESVRDGELTVISNGAPKKTFKFDAVFGP 417
GNIRV+CR RP L + E + S++ V D V+ E+T I N A FKFD +F
Sbjct: 2 GNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQ 61
Query: 418 QADQVDVFQDTAPFANSVLDGYNVCIFAYGQTGTGKTFTMEGTKEARGVNFRTLEELFRI 477
Q VDVF++ S LDGYNVCIFAYGQTG+GKTFTM G+ T+ +F
Sbjct: 62 QDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTM--LNPGDGIIPSTISHIFNW 119
Query: 478 I-KEREKLYRYDISVSVLEVYNEQIRDLLAVGS---QPGAVSKRLEVRQAGEGMHHVPGL 533
I K + K + Y ++ +E+YNE I DLL + + ++ + E+R E
Sbjct: 120 INKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITN 179
Query: 534 VEAHVNNISEVWE-VLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRRELVEWGMHKEQAM 592
V + E+ E +L+ + +R+ ST +NEHSSRSH + + + + G H +
Sbjct: 180 VTSCKLESEEMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYGTL 239
Query: 593 ----ASGSSR-------------------------------------------KNSKLTH 605
+GS R +NSKLT+
Sbjct: 240 NLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTY 299
Query: 606 LLQDSLGGDSKTLMFVQISPNENDLSETLCSLNFASRVRGIELGAAK 652
LLQ SL GDSKTLMFV ISP+ + ++ETL SL FAS+V L + K
Sbjct: 300 LLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVSRK 346
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 168 bits (426), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 122/349 (34%), Positives = 172/349 (49%), Gaps = 59/349 (16%)
Query: 361 LKGNIRVFCRCRP-LNSEETAAGSVMAV----DFESVRDGELTVISNGAPKKTFKFDAVF 415
++GNIRV+CR RP L + E + S++ V D V+ E+T I N A FKFD +F
Sbjct: 1 MRGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIF 60
Query: 416 GPQADQVDVFQDTAPFANSVLDGYNVCIFAYGQTGTGKTFTMEGTKEARGVNFRTLEELF 475
Q VDVF++ S LDGYNVCIFAYGQTG+GKTFTM G+ T+ +F
Sbjct: 61 DQQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTM--LNPGDGIIPSTISHIF 118
Query: 476 RII-KEREKLYRYDISVSVLEVYNEQIRDLLAVGS---QPGAVSKRLEVRQAGEGMHHVP 531
I K + K + Y ++ +E+YNE I DLL + + ++ + E+R E
Sbjct: 119 NWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTI 178
Query: 532 GLVEAHVNNISEVWE-VLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRRELVEWGMHKEQ 590
V + E+ E +L+ + +R+ ST +NEHSS SH + + + + G H
Sbjct: 179 TNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAKTGAHSYG 238
Query: 591 AM----ASGSSR-------------------------------------------KNSKL 603
+ +GS R +NSKL
Sbjct: 239 TLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKL 298
Query: 604 THLLQDSLGGDSKTLMFVQISPNENDLSETLCSLNFASRVRGIELGAAK 652
T+LLQ SL GDSKTLMFV ISP+ + ++ETL SL FAS+V L + K
Sbjct: 299 TYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVSRK 347
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 167 bits (424), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 116/361 (32%), Positives = 177/361 (49%), Gaps = 63/361 (17%)
Query: 364 NIRVFCRCRPLNSEETAAGSVMAVDFESVRDGELTVISNGAPKKTFKFDAVFGPQADQVD 423
+I+V R RP N E +G V F+ + + + + +F FD VF Q D
Sbjct: 7 SIKVVARFRPQNRVEIESGGQPIVTFQG---PDTCTVDSKEAQGSFTFDRVFDMSCKQSD 63
Query: 424 VFQ-DTAPFANSVLDGYNVCIFAYGQTGTGKTFTMEGTK----EARGVNFRTLEELFRII 478
+F P + +L+GYN +FAYGQTG GK++TM GT + RGV R +E++F I
Sbjct: 64 IFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSI 123
Query: 479 KEREKLYRYDISVSVLEVYNEQIRDLLAVGSQPGAVSKRLEVRQAGEGMHHVPGLVEAHV 538
Y + VS +E+Y E+IRDLLA + L V + +V GL+E +V
Sbjct: 124 LSSAANIEYTVRVSYMEIYMERIRDLLA------PQNDNLPVHEEKNRGVYVKGLLEIYV 177
Query: 539 NNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRRELVEWGMHKE--------- 589
+++ EV+EV++ G N RAV +TN N+ SSRSH + + + ++ VE G K
Sbjct: 178 SSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSAKSGQLFLVDLA 237
Query: 590 --------------------------------QAMASGSSR----KNSKLTHLLQDSLGG 613
A+ G S ++SKLT +LQ+SLGG
Sbjct: 238 GSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGG 297
Query: 614 DSKTLMFVQISPNENDLSETLCSLNFASRVRGIELGA-AKKQLDTSELLRYKQMVEKTKQ 672
+S+T + + SP+ + +ETL +L F R + I+ A +L +EL KQM+ K K
Sbjct: 298 NSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNAELSPAEL---KQMLAKAKT 354
Query: 673 E 673
+
Sbjct: 355 Q 355
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 159 bits (403), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 124/374 (33%), Positives = 179/374 (47%), Gaps = 68/374 (18%)
Query: 336 LYEHLKIKFIEGTKERKELYNKVLELKGNIRVFCRCRP-LNSEETAAGSVMAVDFESVRD 394
+ E +K ++ R+ L+N++ EL+GNIRV+CR RP L E+ + F+
Sbjct: 1 MAEEIKKILVKEESLRRALHNELQELRGNIRVYCRIRPPLPHEDDNIEHIKVQPFDDDNG 60
Query: 395 GELTVISNGAPKKT-FKFDAVFGPQADQVDVFQDTAPFANSVLDGYNVCIFAYGQTGTGK 453
+ I+ G + FKFD +F Q ++F++ S LDGYNVCIFAYGQTG+GK
Sbjct: 61 DQGMTINRGNSQVIPFKFDKIFDQQETNDEIFKEVGQLIQSSLDGYNVCIFAYGQTGSGK 120
Query: 454 TFTMEGTKEARGVNFRTLEELFRII-KEREKLYRYDISVSVLEVYNEQIRDLLAVGSQPG 512
T+TM G+ T+ +F I K + + Y +S +E+YNE I DLL + G
Sbjct: 121 TYTM--LNPGDGIVPATINHIFSWIDKLAARGWSYKVSCEFIEIYNENIVDLL----RSG 174
Query: 513 AVSKRLEVRQAGEG--MHHVPGLVEAHVNNIS--------EVWEVLQTGSNVRAVGSTNA 562
A S+ R A + H L ++ NI+ V +VL+ + +R+ ST A
Sbjct: 175 APSQENNDRNADSKHEIRHDQELKTTYITNITTCVLDSRDTVDKVLKRANKLRSTASTAA 234
Query: 563 NEHSSRSHCMHCVMVRRELVEWGMHKEQAM-----ASGSSR------------------- 598
NEHSSRSH + + + + E K Q + +GS R
Sbjct: 235 NEHSSRSHSIFIIHLEGK-NEGTGEKSQGILNLVDLAGSERLNSSMVVGERLRETQSINK 293
Query: 599 ------------------------KNSKLTHLLQDSLGGDSKTLMFVQISPNENDLSETL 634
+NSKLT+LLQ SL G SKTLMFV ISP L+ET+
Sbjct: 294 SLSCLGDVIHALNSPDGQKRHIPFRNSKLTYLLQYSLIGSSKTLMFVNISPAALHLNETI 353
Query: 635 CSLNFASRVRGIEL 648
SL FAS+V ++
Sbjct: 354 NSLRFASKVNNTKM 367
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 159 bits (403), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 119/348 (34%), Positives = 168/348 (48%), Gaps = 71/348 (20%)
Query: 364 NIRVFCRCRPLNSEETAAGSVMAVDFESVRDGELTVISNG----APKKTFKFDAVFGPQA 419
NI+V RCRP N E A + V+ + VR E++V + G + +KT+ FD VFG
Sbjct: 18 NIQVVVRCRPFNLAERKASAHSIVECDPVRK-EVSVRTGGLADKSSRKTYTFDMVFGAST 76
Query: 420 DQVDVFQDTA-PFANSVLDGYNVCIFAYGQTGTGKTFTMEGTKEAR-----------GVN 467
Q+DV++ P + V+ GYN IFAYGQTGTGKTFTMEG + G+
Sbjct: 77 KQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLDGII 136
Query: 468 FRTLEELFRIIKEREKLYRYDISVSVLEVYNEQIRDLLAVGSQPGAVSKRLEVRQAGEGM 527
RTL ++F K + + + VS+LE+YNE++ DLL S VS+RL++
Sbjct: 137 PRTLHQIFE--KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSD---VSERLQMFDDPRNK 191
Query: 528 HHV--PGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVR------- 578
V GL E V+N EV+++L+ G+ R +T N +SSRSH + V +
Sbjct: 192 RGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID 251
Query: 579 -RELVEWG-------MHKEQAMASGSSRKN------------------------------ 600
ELV+ G E SG+ K
Sbjct: 252 GEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPY 311
Query: 601 --SKLTHLLQDSLGGDSKTLMFVQISPNENDLSETLCSLNFASRVRGI 646
SKLT +LQDSLGG ++T + ISP +L ETL +L +A R + I
Sbjct: 312 RESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 159 bits (403), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 119/348 (34%), Positives = 168/348 (48%), Gaps = 71/348 (20%)
Query: 364 NIRVFCRCRPLNSEETAAGSVMAVDFESVRDGELTVISNG----APKKTFKFDAVFGPQA 419
NI+V RCRP N E A + V+ + VR E++V + G + +KT+ FD VFG
Sbjct: 18 NIQVVVRCRPFNLAERKASAHSIVECDPVRK-EVSVRTGGLADKSSRKTYTFDMVFGAST 76
Query: 420 DQVDVFQDTA-PFANSVLDGYNVCIFAYGQTGTGKTFTMEGTKEAR-----------GVN 467
Q+DV++ P + V+ GYN IFAYGQTGTGKTFTMEG + G+
Sbjct: 77 KQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGII 136
Query: 468 FRTLEELFRIIKEREKLYRYDISVSVLEVYNEQIRDLLAVGSQPGAVSKRLEVRQAGEGM 527
RTL ++F K + + + VS+LE+YNE++ DLL S VS+RL++
Sbjct: 137 PRTLHQIFE--KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSD---VSERLQMFDDPRNK 191
Query: 528 HHV--PGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVR------- 578
V GL E V+N EV+++L+ G+ R +T N +SSRSH + V +
Sbjct: 192 RGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID 251
Query: 579 -RELVEWG-------MHKEQAMASGSSRKN------------------------------ 600
ELV+ G E SG+ K
Sbjct: 252 GEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPY 311
Query: 601 --SKLTHLLQDSLGGDSKTLMFVQISPNENDLSETLCSLNFASRVRGI 646
SKLT +LQDSLGG ++T + ISP +L ETL +L +A R + I
Sbjct: 312 RESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 159 bits (403), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 119/348 (34%), Positives = 168/348 (48%), Gaps = 71/348 (20%)
Query: 364 NIRVFCRCRPLNSEETAAGSVMAVDFESVRDGELTVISNG----APKKTFKFDAVFGPQA 419
NI+V RCRP N E A + V+ + VR E++V + G + +KT+ FD VFG
Sbjct: 17 NIQVVVRCRPFNLAERKASAHSIVECDPVRK-EVSVRTGGLADKSSRKTYTFDMVFGAST 75
Query: 420 DQVDVFQDTA-PFANSVLDGYNVCIFAYGQTGTGKTFTMEGTKEAR-----------GVN 467
Q+DV++ P + V+ GYN IFAYGQTGTGKTFTMEG + G+
Sbjct: 76 KQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGII 135
Query: 468 FRTLEELFRIIKEREKLYRYDISVSVLEVYNEQIRDLLAVGSQPGAVSKRLEVRQAGEGM 527
RTL ++F K + + + VS+LE+YNE++ DLL S VS+RL++
Sbjct: 136 PRTLHQIFE--KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSD---VSERLQMFDDPRNK 190
Query: 528 HHV--PGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVR------- 578
V GL E V+N EV+++L+ G+ R +T N +SSRSH + V +
Sbjct: 191 RGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID 250
Query: 579 -RELVEWG-------MHKEQAMASGSSRKN------------------------------ 600
ELV+ G E SG+ K
Sbjct: 251 GEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPY 310
Query: 601 --SKLTHLLQDSLGGDSKTLMFVQISPNENDLSETLCSLNFASRVRGI 646
SKLT +LQDSLGG ++T + ISP +L ETL +L +A R + I
Sbjct: 311 RESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 358
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 159 bits (402), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 119/348 (34%), Positives = 168/348 (48%), Gaps = 71/348 (20%)
Query: 364 NIRVFCRCRPLNSEETAAGSVMAVDFESVRDGELTVISNG----APKKTFKFDAVFGPQA 419
NI+V RCRP N E A + V+ + VR E++V + G + +KT+ FD VFG
Sbjct: 18 NIQVVVRCRPFNLAERKASAHSIVECDPVRK-EVSVRTGGLADKSSRKTYTFDMVFGAST 76
Query: 420 DQVDVFQDTA-PFANSVLDGYNVCIFAYGQTGTGKTFTMEGTKEAR-----------GVN 467
Q+DV++ P + V+ GYN IFAYGQTGTGKTFTMEG + G+
Sbjct: 77 KQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGII 136
Query: 468 FRTLEELFRIIKEREKLYRYDISVSVLEVYNEQIRDLLAVGSQPGAVSKRLEVRQAGEGM 527
RTL ++F K + + + VS+LE+YNE++ DLL S VS+RL++
Sbjct: 137 PRTLHQIFE--KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSD---VSERLQMFDDPRNK 191
Query: 528 HHV--PGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVR------- 578
V GL E V+N EV+++L+ G+ R +T N +SSRSH + V +
Sbjct: 192 RGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID 251
Query: 579 -RELVEWG-------MHKEQAMASGSSRKN------------------------------ 600
ELV+ G E SG+ K
Sbjct: 252 GEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPY 311
Query: 601 --SKLTHLLQDSLGGDSKTLMFVQISPNENDLSETLCSLNFASRVRGI 646
SKLT +LQDSLGG ++T + ISP +L ETL +L +A R + I
Sbjct: 312 RESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 159 bits (402), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 119/348 (34%), Positives = 168/348 (48%), Gaps = 71/348 (20%)
Query: 364 NIRVFCRCRPLNSEETAAGSVMAVDFESVRDGELTVISNG----APKKTFKFDAVFGPQA 419
NI+V RCRP N E A + V+ + VR E++V + G + +KT+ FD VFG
Sbjct: 18 NIQVVVRCRPFNLAERKASAHSIVECDPVRK-EVSVRTGGLADKSSRKTYTFDMVFGAST 76
Query: 420 DQVDVFQDTA-PFANSVLDGYNVCIFAYGQTGTGKTFTMEGTKEAR-----------GVN 467
Q+DV++ P + V+ GYN IFAYGQTGTGKTFTMEG + G+
Sbjct: 77 KQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEVPLAGII 136
Query: 468 FRTLEELFRIIKEREKLYRYDISVSVLEVYNEQIRDLLAVGSQPGAVSKRLEVRQAGEGM 527
RTL ++F K + + + VS+LE+YNE++ DLL S VS+RL++
Sbjct: 137 PRTLHQIFE--KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSD---VSERLQMFDDPRNK 191
Query: 528 HHV--PGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVR------- 578
V GL E V+N EV+++L+ G+ R +T N +SSRSH + V +
Sbjct: 192 RGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID 251
Query: 579 -RELVEWG-------MHKEQAMASGSSRKN------------------------------ 600
ELV+ G E SG+ K
Sbjct: 252 GEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPY 311
Query: 601 --SKLTHLLQDSLGGDSKTLMFVQISPNENDLSETLCSLNFASRVRGI 646
SKLT +LQDSLGG ++T + ISP +L ETL +L +A R + I
Sbjct: 312 RESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 159 bits (402), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 119/348 (34%), Positives = 168/348 (48%), Gaps = 71/348 (20%)
Query: 364 NIRVFCRCRPLNSEETAAGSVMAVDFESVRDGELTVISNG----APKKTFKFDAVFGPQA 419
NI+V RCRP N E A + V+ + VR E++V + G + +KT+ FD VFG
Sbjct: 20 NIQVVVRCRPFNLAERKASAHSIVECDPVRK-EVSVRTGGLADKSSRKTYTFDMVFGAST 78
Query: 420 DQVDVFQDTA-PFANSVLDGYNVCIFAYGQTGTGKTFTMEGTKEAR-----------GVN 467
Q+DV++ P + V+ GYN IFAYGQTGTGKTFTMEG + G+
Sbjct: 79 KQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGII 138
Query: 468 FRTLEELFRIIKEREKLYRYDISVSVLEVYNEQIRDLLAVGSQPGAVSKRLEVRQAGEGM 527
RTL ++F K + + + VS+LE+YNE++ DLL S VS+RL++
Sbjct: 139 PRTLHQIFE--KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSD---VSERLQMFDDPRNK 193
Query: 528 HHV--PGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVR------- 578
V GL E V+N EV+++L+ G+ R +T N +SSRSH + V +
Sbjct: 194 RGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID 253
Query: 579 -RELVEWG-------MHKEQAMASGSSRKN------------------------------ 600
ELV+ G E SG+ K
Sbjct: 254 GEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPY 313
Query: 601 --SKLTHLLQDSLGGDSKTLMFVQISPNENDLSETLCSLNFASRVRGI 646
SKLT +LQDSLGG ++T + ISP +L ETL +L +A R + I
Sbjct: 314 RESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 361
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 159 bits (402), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 119/348 (34%), Positives = 168/348 (48%), Gaps = 71/348 (20%)
Query: 364 NIRVFCRCRPLNSEETAAGSVMAVDFESVRDGELTVISNG----APKKTFKFDAVFGPQA 419
NI+V RCRP N E A + V+ + VR E++V + G + +KT+ FD VFG
Sbjct: 9 NIQVVVRCRPFNLAERKASAHSIVECDPVRK-EVSVRTGGLADKSSRKTYTFDMVFGAST 67
Query: 420 DQVDVFQDTA-PFANSVLDGYNVCIFAYGQTGTGKTFTMEGTKEAR-----------GVN 467
Q+DV++ P + V+ GYN IFAYGQTGTGKTFTMEG + G+
Sbjct: 68 KQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGII 127
Query: 468 FRTLEELFRIIKEREKLYRYDISVSVLEVYNEQIRDLLAVGSQPGAVSKRLEVRQAGEGM 527
RTL ++F K + + + VS+LE+YNE++ DLL S VS+RL++
Sbjct: 128 PRTLHQIFE--KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSD---VSERLQMFDDPRNK 182
Query: 528 HHV--PGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVR------- 578
V GL E V+N EV+++L+ G+ R +T N +SSRSH + V +
Sbjct: 183 RGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID 242
Query: 579 -RELVEWG-------MHKEQAMASGSSRKN------------------------------ 600
ELV+ G E SG+ K
Sbjct: 243 GEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPY 302
Query: 601 --SKLTHLLQDSLGGDSKTLMFVQISPNENDLSETLCSLNFASRVRGI 646
SKLT +LQDSLGG ++T + ISP +L ETL +L +A R + I
Sbjct: 303 RESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 350
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 158 bits (400), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 119/348 (34%), Positives = 168/348 (48%), Gaps = 71/348 (20%)
Query: 364 NIRVFCRCRPLNSEETAAGSVMAVDFESVRDGELTVISNG----APKKTFKFDAVFGPQA 419
NI+V R RP N E A + V+ + VR E++V + G + +KT+ FD VFG
Sbjct: 18 NIQVVVRVRPFNLAERKASAHSIVESDPVRK-EVSVRTGGLADKSSRKTYTFDMVFGAST 76
Query: 420 DQVDVFQDT-APFANSVLDGYNVCIFAYGQTGTGKTFTMEGTKEAR-----------GVN 467
Q+DV++ AP + V+ GYN IFAYGQTGTGKTFTMEG + G+
Sbjct: 77 KQIDVYRSVVAPILDEVIMGYNATIFAYGQTGTGKTFTMEGERSPNEEYCWEEDPLAGII 136
Query: 468 FRTLEELFRIIKEREKLYRYDISVSVLEVYNEQIRDLLAVGSQPGAVSKRLEVRQAGEGM 527
RTL ++F K + + + VS+LE+YNE++ DLL S VS+RL++
Sbjct: 137 PRTLHQIFE--KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSD---VSERLQMFDDPRNK 191
Query: 528 HHV--PGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVR------- 578
V GL E V+N EV+++L+ G+ R +T N +SSRSH + V +
Sbjct: 192 RGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID 251
Query: 579 -RELVEWG-------MHKEQAMASGSSRKN------------------------------ 600
ELV+ G E SG+ K
Sbjct: 252 GEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPY 311
Query: 601 --SKLTHLLQDSLGGDSKTLMFVQISPNENDLSETLCSLNFASRVRGI 646
SKLT +LQDSLGG ++T + ISP +L ETL +L +A R + I
Sbjct: 312 RESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 359
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 158 bits (399), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 119/348 (34%), Positives = 169/348 (48%), Gaps = 71/348 (20%)
Query: 364 NIRVFCRCRPLNSEETAAGSVMAVDFESVRDGELTVISNG----APKKTFKFDAVFGPQA 419
NI+V RCRP N E A + V+ + VR E++V + G + +KT+ FD VFG
Sbjct: 3 NIQVVVRCRPFNLAERKASAHSIVECDPVRK-EVSVRTGGLADKSSRKTYTFDMVFGAST 61
Query: 420 DQVDVFQDTA-PFANSVLDGYNVCIFAYGQTGTGKTFTMEGTKEAR-----------GVN 467
Q+DV++ P + V+ GYN IFAYGQTGTGKTFTMEG + G+
Sbjct: 62 KQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGII 121
Query: 468 FRTLEELFRIIKEREKLYRYDISVSVLEVYNEQIRDLLAVGSQPGAVSKRLEVRQAGEGM 527
RTL ++F K + + + VS+LE+YNE++ DLL S VS+RL++
Sbjct: 122 PRTLHQIFE--KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSD---VSERLQMFDDPRNK 176
Query: 528 HHV--PGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVR------- 578
V GL E V+N EV+++L+ G+ R +T N +SSRSH + V +
Sbjct: 177 RGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID 236
Query: 579 -RELVEWGMHKEQAMA-------SGSSRKN------------------------------ 600
ELV+ G +A SG+ K
Sbjct: 237 GEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPY 296
Query: 601 --SKLTHLLQDSLGGDSKTLMFVQISPNENDLSETLCSLNFASRVRGI 646
SKLT +LQDSLGG ++T + ISP +L ETL +L +A R + I
Sbjct: 297 RESKLTRILQDSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNI 344
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 154 bits (390), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 108/349 (30%), Positives = 167/349 (47%), Gaps = 60/349 (17%)
Query: 359 LELKGNIRVFCRCRP-LNSEETAAGSVMAVDFESVRDGELTVISNGAPK---KTFKFDAV 414
+ L+GNIRV+CR RP L +E ++ F + + I+ + F+FD +
Sbjct: 1 MALRGNIRVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNEGRILSYNFQFDMI 60
Query: 415 FGPQADQVDVFQDTAPFANSVLDGYNVCIFAYGQTGTGKTFTMEGTKEARGVNFRTLEEL 474
F P ++F++ S LDGYNVCIFAYGQTG+GKT+TM + G+ TL +
Sbjct: 61 FEPSHTNKEIFEEIRQLVQSSLDGYNVCIFAYGQTGSGKTYTMLNAGD--GMIPMTLSHI 118
Query: 475 FRIIKE-REKLYRYDISVSVLEVYNEQIRDLLAVGSQPGAV-----SKRLEVRQAGEGM- 527
F+ +E+ + Y++ +E+YNE I DLL + S++ ++R E
Sbjct: 119 FKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNIDEILDSQKHDIRHDHEKQG 178
Query: 528 HHVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRRELVEWGMH 587
++ + + + S+V +L+ S +R+ +T +NE SSRSH + V + + G
Sbjct: 179 TYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNLHTGET 238
Query: 588 KEQAM----ASGSSR-------------------------------------------KN 600
+ + +GS R +N
Sbjct: 239 SQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKRYIPFRN 298
Query: 601 SKLTHLLQDSLGGDSKTLMFVQISPNENDLSETLCSLNFASRVRGIELG 649
SKLT+LLQ SL GDSKTLMFV I P+ N +SETL SL FAS+V ++
Sbjct: 299 SKLTYLLQYSLVGDSKTLMFVNIPPDPNHISETLNSLRFASKVNSTKIA 347
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 150 bits (378), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 91/223 (40%), Positives = 133/223 (59%), Gaps = 19/223 (8%)
Query: 365 IRVFCRCRPLNSEETAAG--SVMAVDFESVRDGELTV----ISNGAPKKTFKFDAVFGPQ 418
++V RCRPL+ +E AAG ++ +D V+ G++T+ + G KTF FDAV+
Sbjct: 23 LKVVARCRPLSRKEEAAGHEQILTMD---VKLGQVTLRNPRAAPGELPKTFTFDAVYDAS 79
Query: 419 ADQVDVFQDTA-PFANSVLDGYNVCIFAYGQTGTGKTFTMEGT---KEARGVNFRTLEEL 474
+ Q D++ +T P +SVL G+N +FAYGQTGTGKT+TM+GT E RGV E +
Sbjct: 80 SKQADLYDETVRPLIDSVLQGFNGTVFAYGQTGTGKTYTMQGTWVEPELRGVIPNAFEHI 139
Query: 475 FRIIKEREKLYRYDISVSVLEVYNEQIRDLLAVGSQPGAVSKRLEVRQAGEGMHHVPGLV 534
F I R + +Y + S LE+Y E+IRDLL+ +PG KRLE+++ E ++ L
Sbjct: 140 FTHIS-RSQNQQYLVRASYLEIYQEEIRDLLS--KEPG---KRLELKENPETGVYIKDLS 193
Query: 535 EAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMV 577
N+ E+ V+ G+ RAVGST+ NE SSRSH + + V
Sbjct: 194 SFVTKNVKEIEHVMNLGNQTRAVGSTHMNEVSSRSHAIFIITV 236
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 35/49 (71%)
Query: 599 KNSKLTHLLQDSLGGDSKTLMFVQISPNENDLSETLCSLNFASRVRGIE 647
++SKLT LLQDSLGG++KT+M + P + E+L +L FA+R + I+
Sbjct: 330 RDSKLTRLLQDSLGGNAKTIMVATLGPASHSYDESLSTLRFANRAKNIK 378
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 109/331 (32%), Positives = 155/331 (46%), Gaps = 61/331 (18%)
Query: 364 NIRVFCRCRPLNSEETAAGSVMAVDFESVRDGELTVISNGAPKKTFKFDAVFGPQADQVD 423
NI+V CR RPLN E G F+ GE TV+ P + FD VF Q
Sbjct: 8 NIKVMCRFRPLNESEVNRGDKYIAKFQ----GEDTVVIASKP---YAFDRVFQSSTSQEQ 60
Query: 424 VFQDTAP-FANSVLDGYNVCIFAYGQTGTGKTFTMEG---TKEARGVNFRTLEELFRIIK 479
V+ D A VL+GYN IFAYGQT +GKT TMEG E G+ R ++++F I
Sbjct: 61 VYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIY 120
Query: 480 EREKLYRYDISVSVLEVYNEQIRDLLAVGSQPGAVSKRLEVRQAGEGMHHVPGLVEAHVN 539
++ + I VS E+Y ++IRDLL V L V + + +V G E V
Sbjct: 121 SMDENLEFHIKVSYFEIYLDKIRDLLDVSKT------NLSVHEDKNRVPYVKGCTERFVC 174
Query: 540 NISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRRE-------------LVEWGM 586
+ EV + + G + R V TN NEHSSRSH + + V++E LV+
Sbjct: 175 SPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAG 234
Query: 587 HKE----------------------------QAMASGSS---RKNSKLTHLLQDSLGGDS 615
++ A+A GS+ ++SK+T +LQDSLGG+
Sbjct: 235 SEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNC 294
Query: 616 KTLMFVQISPNENDLSETLCSLNFASRVRGI 646
+T + + SP+ + SET +L F R + I
Sbjct: 295 RTTIVICCSPSSYNESETKSTLLFGQRAKTI 325
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 147 bits (371), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 109/332 (32%), Positives = 156/332 (46%), Gaps = 61/332 (18%)
Query: 364 NIRVFCRCRPLNSEETAAGSVMAVDFESVRDGELTVISNGAPKKTFKFDAVFGPQADQVD 423
NI+V CR RPLN E G F+ GE TV+ P + FD VF Q
Sbjct: 8 NIKVMCRFRPLNESEVNRGDKYIAKFQ----GEDTVVIASKP---YAFDRVFQSSTSQEQ 60
Query: 424 VFQDTAP-FANSVLDGYNVCIFAYGQTGTGKTFTMEG---TKEARGVNFRTLEELFRIIK 479
V+ D A VL+GYN IFAYGQT +GKT TMEG E G+ R ++++F I
Sbjct: 61 VYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIY 120
Query: 480 EREKLYRYDISVSVLEVYNEQIRDLLAVGSQPGAVSKRLEVRQAGEGMHHVPGLVEAHVN 539
++ + I VS E+Y ++IRDLL V L V + + +V G E V
Sbjct: 121 SMDENLEFHIKVSYFEIYLDKIRDLLDVSKT------NLSVHEDKNRVPYVKGCTERFVC 174
Query: 540 NISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRRE-------------LVEWGM 586
+ EV + + G + R V TN NEHSSRSH + + V++E LV+
Sbjct: 175 SPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAG 234
Query: 587 HKE----------------------------QAMASGSS---RKNSKLTHLLQDSLGGDS 615
++ A+A GS+ ++SK+T +LQDSLGG+
Sbjct: 235 SEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNC 294
Query: 616 KTLMFVQISPNENDLSETLCSLNFASRVRGIE 647
+T + + SP+ + SET +L F R + I+
Sbjct: 295 RTTIVICCSPSSYNESETKSTLLFGQRAKTIK 326
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 147 bits (370), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 107/332 (32%), Positives = 159/332 (47%), Gaps = 59/332 (17%)
Query: 365 IRVFCRCRPLNSEETAAGSVMAVDFESVRDGELTVISNGAPKKTFKFDAVFGPQADQVDV 424
I+V CR RPLN E AGS V F + + I+ K + FD VF P A Q V
Sbjct: 13 IKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIAG----KVYLFDKVFKPNASQEKV 68
Query: 425 FQDTA-PFANSVLDGYNVCIFAYGQTGTGKTFTMEGT---KEARGVNFRTLEELFRIIKE 480
+ + A VL GYN IFAYGQT +GKT TMEG +G+ R + ++F I
Sbjct: 69 YNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNHIYA 128
Query: 481 REKLYRYDISVSVLEVYNEQIRDLLAVGSQPGAVSKRLEVRQAGEGMHHVPGLVEAHVNN 540
E + I VS E+Y ++IRDLL V L V + + +V G E V++
Sbjct: 129 MEVNLEFHIKVSYYEIYMDKIRDLLDVSKV------NLSVHEDKNRVPYVKGATERFVSS 182
Query: 541 ISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRRE-------------LVEWGMH 587
+V+EV++ G + R + TN NEHSSRSH + + V++E LV+
Sbjct: 183 PEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQKKLSGKLYLVDLAGS 242
Query: 588 KE----------------------------QAMASGSSR----KNSKLTHLLQDSLGGDS 615
++ A+A G+ ++SKLT +LQ+SLGG++
Sbjct: 243 EKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNA 302
Query: 616 KTLMFVQISPNENDLSETLCSLNFASRVRGIE 647
+T + + SP + SET +L+F R + ++
Sbjct: 303 RTTIVICCSPASFNESETKSTLDFGRRAKTVK 334
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 145 bits (366), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 108/332 (32%), Positives = 155/332 (46%), Gaps = 61/332 (18%)
Query: 364 NIRVFCRCRPLNSEETAAGSVMAVDFESVRDGELTVISNGAPKKTFKFDAVFGPQADQVD 423
NI+V CR RPLN E G F+ GE TV+ P + FD VF Q
Sbjct: 8 NIKVMCRFRPLNESEVNRGDKYVAKFQ----GEDTVMIASKP---YAFDRVFQSSTSQEQ 60
Query: 424 VFQDTAP-FANSVLDGYNVCIFAYGQTGTGKTFTMEG---TKEARGVNFRTLEELFRIIK 479
V+ D A VL+GYN IFAYGQT +GK TMEG E G+ R ++++F I
Sbjct: 61 VYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKNHTMEGKLHDPEGMGIIPRIVQDIFNYIY 120
Query: 480 EREKLYRYDISVSVLEVYNEQIRDLLAVGSQPGAVSKRLEVRQAGEGMHHVPGLVEAHVN 539
++ + I VS E+Y ++IRDLL V L V + + +V G E V
Sbjct: 121 SMDENLEFHIKVSYFEIYLDKIRDLLDVSKT------NLSVHEDKNRVPYVKGCTERFVC 174
Query: 540 NISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRRE-------------LVEWGM 586
+ EV + + G + R V TN NEHSSRSH + + V++E LV+
Sbjct: 175 SPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLVDLAG 234
Query: 587 HKE----------------------------QAMASGSS---RKNSKLTHLLQDSLGGDS 615
++ A+A GS+ ++SK+T +LQDSLGG+
Sbjct: 235 SEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNC 294
Query: 616 KTLMFVQISPNENDLSETLCSLNFASRVRGIE 647
+T + + SP+ + SET +L F R + I+
Sbjct: 295 RTTIVICCSPSSYNESETKSTLLFGQRAKTIK 326
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 143 bits (360), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 108/346 (31%), Positives = 153/346 (44%), Gaps = 69/346 (19%)
Query: 364 NIRVFCRCRPLNSEETAAGSVMAVDFESVRDGELTVISNGAPKKTFKFDAVFGPQADQVD 423
NI+V+ R RPLNS E S VD R+ + K F FD FGP++ Q D
Sbjct: 24 NIQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTLDSKLTKKFTFDRSFGPESKQCD 83
Query: 424 VFQDT-APFANSVLDGYNVCIFAYGQTGTGKTFTMEGTKEAR-----------GVNFRTL 471
V+ +P VL+GYN +FAYGQTGTGKT TM G + A G+ R L
Sbjct: 84 VYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRAL 143
Query: 472 EELFRIIKEREKLYRYDISVSVLEVYNEQIRDLLAVGSQPGAVSKRLEVRQAGEGMHHVP 531
LF ++ E Y + +S LE+YNE++ DLL S R+ +G +
Sbjct: 144 SHLFDELRMME--VEYTMRISYLELYNEELCDLL---STDDTTKIRIFDDSTKKGSVIIQ 198
Query: 532 GLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRRELVEWGMHKEQA 591
GL E V++ +V+++L+ G R +T N SSRSH + ++V + E G+ E
Sbjct: 199 GLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVV--HIRENGIEGEDM 256
Query: 592 MASGS--------------------------------------------------SRKNS 601
+ G + S
Sbjct: 257 LKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDRAPHVPYRES 316
Query: 602 KLTHLLQDSLGGDSKTLMFVQISPNENDLSETLCSLNFASRVRGIE 647
KLT LLQ+SLGG +KT + ISP D+ ETL +L +A R + I+
Sbjct: 317 KLTRLLQESLGGRTKTSIIATISPGHKDIEETLSTLEYAHRAKNIQ 362
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 142 bits (359), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 110/341 (32%), Positives = 160/341 (46%), Gaps = 66/341 (19%)
Query: 364 NIRVFCRCRPLNSEET--AAGSVMAVDFESVR------DGELTVISNGAPKKTFKFDAVF 415
NI+V RCRPLN+ ET A +++ +D S + + E + +TF FDAV+
Sbjct: 5 NIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVY 64
Query: 416 GPQADQVDVFQDT-APFANSVLDGYNVCIFAYGQTGTGKTFTMEGTKEARGVNFRTLEEL 474
+ +FQ + P ++VL+G+N IFAYGQTG GKT+TM G KE G + + L
Sbjct: 65 DQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSFKHL 124
Query: 475 FRIIKEREKLYRYDISVSVLEVYNEQIRDLLAVGSQPGAVSKRLEVRQAGEGMHHVPGLV 534
F I + + S LE+YNE+IRDL+ + +L +++ +V GL
Sbjct: 125 FDAINSSSSNQNFLVIGSYLELYNEEIRDLIKNNT-------KLPLKEDKTRGIYVDGLS 177
Query: 535 EAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRRELVEWGMHKEQAMA- 593
V +E+ ++ G R V +T N+ SSRSH + MVR E E +KE
Sbjct: 178 MHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIF--MVRIECSEVIENKEVIRVG 235
Query: 594 -------SGSSR----------------------------------------KNSKLTHL 606
+GS R ++SKLT L
Sbjct: 236 KLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGATHIPYRDSKLTRL 295
Query: 607 LQDSLGGDSKTLMFVQISPNENDLSETLCSLNFASRVRGIE 647
LQDSLGG+SKTLM ISP + ET+ +L +A R + I+
Sbjct: 296 LQDSLGGNSKTLMCANISPASTNYDETMSTLRYADRAKQIK 336
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 139 bits (350), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 109/342 (31%), Positives = 170/342 (49%), Gaps = 64/342 (18%)
Query: 361 LKGNIRVFCRCRPLNSEETAAGSVMAVD---FESVRD------GELTV---ISNGAPKKT 408
LKGNIRVFCR R ++S +++ S + D +E+ +D EL + I+N
Sbjct: 372 LKGNIRVFCRIRNVSSSSSSSSSSSSEDIIQYEAPQDINDESKQELVITRNINNNFSNLR 431
Query: 409 FKFDAVFGPQADQVDVFQDTAPFANSVLDGYNVCIFAYGQTGTGKTFTMEGTKEARGVNF 468
F FD +F + VF++ + LDG NVC+FAYGQTG+GKTFTM + G+
Sbjct: 432 FLFDKIFEREQSNDLVFEELSQLIQCSLDGTNVCVFAYGQTGSGKTFTM--SHPTNGMIP 489
Query: 469 RTLEELFRIIKE-REKLYRYDISVSVLEVYNEQIRDLLAVGSQPGAVSKRLEVRQAG-EG 526
+L+++F I+E +EK + Y + +E+YNE I DLL P + + E++ G
Sbjct: 490 LSLKKIFNDIEELKEKGWSYTVRGKFIEIYNEAIVDLLNPKIDP---NTKYEIKHDDIAG 546
Query: 527 MHHVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVR-------- 578
V + + + + +L + R+ +T +N+HSSRSH + + ++
Sbjct: 547 KTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDLQGYNSLTKE 606
Query: 579 -----RELVEWG--------------MHKEQAM------------------ASGSSRKNS 601
L++ + + QA+ S +NS
Sbjct: 607 SSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDGSHVPYRNS 666
Query: 602 KLTHLLQDSLGGDSKTLMFVQISPNENDLSETLCSLNFASRV 643
KLT+LL+ SLGG+SKTLMFV ISP DL+ET+ SL FA++V
Sbjct: 667 KLTYLLKHSLGGNSKTLMFVNISPLTKDLNETINSLRFATKV 708
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 132 bits (333), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 107/350 (30%), Positives = 159/350 (45%), Gaps = 74/350 (21%)
Query: 365 IRVFCRCRPLNSEETAAGSVMAVDFES---VRDGELTVISNGAPK---KTFKFDAVFGPQ 418
++V R RP+N ET + VD ++ + + T +S G + K F +D F
Sbjct: 3 VKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFWSM 62
Query: 419 --------ADQVDVFQDTAP-FANSVLDGYNVCIFAYGQTGTGKTFTMEGTKEARGVNFR 469
A Q VF+ + DGYN CIFAYGQTG+GK++TM GT + G+ R
Sbjct: 63 DESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPR 122
Query: 470 TLEELF-RIIKEREKLYRYDISVSVLEVYNEQIRDLLAVGSQPGAVSKRLEVRQAGEGMH 528
LF R KE + + + VS +E+YNE++RDLL P + L+VR+
Sbjct: 123 LCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLL----DPKGSRQTLKVREHSVLGP 178
Query: 529 HVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRREL--VEWGM 586
+V GL + V + ++ ++ G+ R V +TN NE SSRSH + + + L V+ G
Sbjct: 179 YVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGT 238
Query: 587 HKEQ-------------------------------------------AMASGSSRKN--- 600
E+ A+A S+ KN
Sbjct: 239 SGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNK 298
Query: 601 ------SKLTHLLQDSLGGDSKTLMFVQISPNENDLSETLCSLNFASRVR 644
S LT LL+DSLGG+SKT M +SP ++ ETL +L +A R +
Sbjct: 299 FVPYRDSVLTWLLKDSLGGNSKTAMVATVSPAADNYDETLSTLRYADRAK 348
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 132 bits (331), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 114/357 (31%), Positives = 161/357 (45%), Gaps = 78/357 (21%)
Query: 360 ELKGNIRVFCRCRPLNSEETAAG---SVMAVD---------------FESVRDGELTVIS 401
+L +++V R RP N++E AAG V VD F + VI
Sbjct: 7 DLCHHMKVVVRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIK 66
Query: 402 NGAPKKTFKFDAVFGPQADQVDVFQDTA-PFANSVLDGYNVCIFAYGQTGTGKTFTMEGT 460
F FDAVF + Q +VF+ T P S L+GYN + AYG TG GKT TM G+
Sbjct: 67 KQNKDLKFVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGS 126
Query: 461 KEARGVNFRTLEELFRIIKEREKLYRYDISVSVLEVYNEQIRDLLAVGSQPGAVSKRLEV 520
+ GV + T+ L++ + E ++ +VS LEVYNEQIRDLL V S P AV E
Sbjct: 127 ADEPGVMYLTMLHLYKCMDEIKEEKICSTAVSYLEVYNEQIRDLL-VNSGPLAVR---ED 182
Query: 521 RQAGEGMHHVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRRE 580
Q G +H GL + E+ +L G+ R T+ N SSRSH + + +R++
Sbjct: 183 TQKGVVVH---GLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLRQQ 239
Query: 581 ----------------LVEWGMHKEQAMASG----------------------------S 596
L++ E+A SG S
Sbjct: 240 DKTASINQNVRIAKMSLIDLA-GSERASTSGAKGTRFVEGTNINRSLLALGNVINALADS 298
Query: 597 SRK-------NSKLTHLLQDSLGGDSKTLMFVQISPNENDLSETLCSLNFASRVRGI 646
RK NSKLT LL+DSLGG+ +T+M +SP+ +T +L +A+R + I
Sbjct: 299 KRKNQHIPYRNSKLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 131 bits (329), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 102/342 (29%), Positives = 161/342 (47%), Gaps = 72/342 (21%)
Query: 365 IRVFCRCRPLNSEETAAGSVMAVDFESVRDGELTVISNGAPKKTFKFDAVFGPQADQVDV 424
+RV R RPL +E G + E G +T+ + F F V A Q V
Sbjct: 13 VRVALRVRPLLPKELLHGHQSCLQVEPGL-GRVTL----GRDRHFGFHVVLAEDAGQEAV 67
Query: 425 FQDTA-PFANSVLDGYNVCIFAYGQTGTGKTFTMEGTKEA------RGVNFRTLEELFRI 477
+Q P + +G+N +FAYGQTG+GKT+TM A +G+ R + E F++
Sbjct: 68 YQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKL 127
Query: 478 IKEREKLYRYDISVSVLEVYNEQIRDLLAVGSQPGAVSKRLEVRQAGEGMHHVPGLVEAH 537
I E + L + VS LEVY E+ RDLL VG+ S+ +++R+ G + G+ E
Sbjct: 128 IDEND-LLDCLVHVSYLEVYKEEFRDLLEVGT----ASRDIQLREDERGNVVLCGVKEVD 182
Query: 538 VNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRR--------------ELVE 583
V + EV +L+ G+ R G+T+ N SSRSH + V +++ +L+
Sbjct: 183 VEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLKQRGRAPSRLPRPAPGQLLV 242
Query: 584 WGMH------KEQAMASGSS-----------------------------------RKNSK 602
H E+ + +GS+ ++SK
Sbjct: 243 SKFHFVDLAGSERVLKTGSTGELRKESIQINSSLLALGNVISALGDPQRRGSNIPYRDSK 302
Query: 603 LTHLLQDSLGGDSKTLMFVQISPNENDLSETLCSLNFASRVR 644
+T +L+DSLGG++KT+M +SP+ +D ETL +LN+ASR +
Sbjct: 303 ITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 130 bits (327), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 102/342 (29%), Positives = 160/342 (46%), Gaps = 72/342 (21%)
Query: 365 IRVFCRCRPLNSEETAAGSVMAVDFESVRDGELTVISNGAPKKTFKFDAVFGPQADQVDV 424
+RV R RPL +E G + E G +T+ + F F V A Q V
Sbjct: 13 VRVALRVRPLLPKELLHGHQSCLQVEPGL-GRVTL----GRDRHFGFHVVLAEDAGQEAV 67
Query: 425 FQDTA-PFANSVLDGYNVCIFAYGQTGTGKTFTMEGTKEA------RGVNFRTLEELFRI 477
+Q P + +G+N +FAYGQTG+GKT+TM A +G+ R + E F++
Sbjct: 68 YQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKL 127
Query: 478 IKEREKLYRYDISVSVLEVYNEQIRDLLAVGSQPGAVSKRLEVRQAGEGMHHVPGLVEAH 537
I E + L + VS LEVY E+ RDLL VG+ S+ +++R+ G + G+ E
Sbjct: 128 IDEND-LLDCLVHVSYLEVYKEEFRDLLEVGT----ASRDIQLREDERGNVVLCGVKEVD 182
Query: 538 VNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRR--------------ELVE 583
V + EV +L+ G+ R G+T+ N SSRSH + V + + +L+
Sbjct: 183 VEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPGQLLV 242
Query: 584 WGMH------KEQAMASGSS-----------------------------------RKNSK 602
H E+ + +GS+ ++SK
Sbjct: 243 SKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSK 302
Query: 603 LTHLLQDSLGGDSKTLMFVQISPNENDLSETLCSLNFASRVR 644
+T +L+DSLGG++KT+M +SP+ +D ETL +LN+ASR +
Sbjct: 303 ITRILKDSLGGNAKTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 122 bits (307), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 110/355 (30%), Positives = 165/355 (46%), Gaps = 71/355 (20%)
Query: 362 KGNIRVFCRCRPLNSEETAAGSVMAVDFESVRDGELTVISNGAPKKTFKFDAVFGPQADQ 421
+G + V R RPLNS E + G V +++ + VI K+F FD VF
Sbjct: 3 EGAVAVCVRVRPLNSREESLGETAQVYWKT----DNNVIYQVDGSKSFNFDRVFHGNETT 58
Query: 422 VDVFQD-TAPFANSVLDGYNVCIFAYGQTGTGKTFTMEGTKEARGVNFRTLEELFRIIK- 479
+V+++ AP +S + GYN IFAYGQT +GKT+TM G+++ GV R + ++F+ IK
Sbjct: 59 KNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKK 118
Query: 480 --EREKLYRYDISVSVLEVYNEQIRDLLAVGSQPGAVSKRLEVRQAGEGMHHVPGLVEAH 537
+RE L R VS +E+YNE I DLL G+Q K L +R+ +V L E
Sbjct: 119 FPDREFLLR----VSYMEIYNETITDLLC-GTQK---MKPLIIREDVNRNVYVADLTEEV 170
Query: 538 VNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMH-CVMVRRE---------------- 580
V + + G R G T N+ SSRSH + ++ RE
Sbjct: 171 VYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHL 230
Query: 581 -LVEWGMHKEQAMASGSS----------------------------------RKNSKLTH 605
LV+ E+A +G++ ++SKLT
Sbjct: 231 NLVDLA-GSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTR 289
Query: 606 LLQDSLGGDSKTLMFVQISPNENDLSETLCSLNFASRVRGIELGAAKKQLDTSEL 660
+LQ+SLGG++KT + I+P D ETL +L FAS + ++ ++ T EL
Sbjct: 290 ILQNSLGGNAKTRIICTITPVSFD--ETLTALQFASTAKYMKNTPYVNEVSTDEL 342
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 121 bits (303), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/224 (36%), Positives = 111/224 (49%), Gaps = 16/224 (7%)
Query: 364 NIRVFCRCRPLNSEETAAGSVMAVDFESVRDGELTVISNGAPKKTFKFDAVFGPQADQVD 423
+I+V CR RPLN E G F + E VI G P + FD V P Q
Sbjct: 7 SIKVMCRFRPLNEAEILRGDKFIPKF---KGEETVVIGQGKP---YVFDRVLPPNTTQEQ 60
Query: 424 VFQDTAP-FANSVLDGYNVCIFAYGQTGTGKTFTMEG---TKEARGVNFRTLEELFRIIK 479
V+ A VL+GYN IFAYGQT +GKT TMEG + G+ R ++F I
Sbjct: 61 VYNACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPQLMGIIPRIAHDIFDHIY 120
Query: 480 EREKLYRYDISVSVLEVYNEQIRDLLAVGSQPGAVSKRLEVRQAGEGMHHVPGLVEAHVN 539
++ + I VS E+Y ++IRDLL V L V + + +V G E V+
Sbjct: 121 SMDENLEFHIKVSYFEIYLDKIRDLLDVSKT------NLAVHEDKNRVPYVKGCTERFVS 174
Query: 540 NISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRRELVE 583
+ EV +V+ G R V TN NEHSSRSH + + +++E VE
Sbjct: 175 SPEEVMDVIDEGKANRHVAVTNMNEHSSRSHSIFLINIKQENVE 218
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 117 bits (293), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 93/332 (28%), Positives = 149/332 (44%), Gaps = 65/332 (19%)
Query: 365 IRVFCRCRPLNSEETAAGSVMAVDFESVRDG-----ELTVISNGAPKKTFKFDAVFGPQA 419
+RV R RP G+ A D VR E+ N ++FDA +G ++
Sbjct: 23 VRVAVRLRPF-----VDGTAGASDPPCVRGMDSCSLEIANWRNHQETLKYQFDAFYGERS 77
Query: 420 DQVDVFQDTA-PFANSVLDGYNVCIFAYGQTGTGKTFTMEGTKEARGVNFRTLEELFRII 478
Q D++ + P +L+G N + AYG TG GKT TM G+ E GV R L +L ++
Sbjct: 78 TQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRALMDLLQLT 137
Query: 479 KE---REKLYRYDISVSVLEVYNEQIRDLLAVGSQPGAVSKRLEVRQAGEGMHHVPGLVE 535
+E + + +++S LE+Y E++ DLL S L +R+ G +PGL +
Sbjct: 138 REEGAEGRPWALSVTMSYLEIYQEKVLDLL------DPASGDLVIREDCRGNILIPGLSQ 191
Query: 536 AHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMV--RRELVEW--------- 584
+++ ++ S R VG+T N+ SSRSH + V V R L +
Sbjct: 192 KPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAPFRQREGKLYL 251
Query: 585 ---------------GMHKEQAMASGSS-------------------RKNSKLTHLLQDS 610
G+ +++ A +S ++SKLT LLQDS
Sbjct: 252 IDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLPRVPYRDSKLTRLLQDS 311
Query: 611 LGGDSKTLMFVQISPNENDLSETLCSLNFASR 642
LGG + +++ I+P +T+ +LNFA+R
Sbjct: 312 LGGSAHSILIANIAPERRFYLDTVSALNFAAR 343
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 92/310 (29%), Positives = 142/310 (45%), Gaps = 54/310 (17%)
Query: 386 AVDFESVRDGELTVISNGAPKKTFKFDAVFGPQADQVDVFQDTAP-FANSVLDGYNVCIF 444
++D +D V++N +FK D V A Q V++ A + LDGYN I
Sbjct: 51 SIDIHLKKDIRRGVVNNQQTDWSFKLDGVL-HDASQDLVYETVAKDVVSQALDGYNGTIM 109
Query: 445 AYGQTGTGKTFTMEGTKEA---RGVNFRTLEELFRIIKEREKLYRYDISVSVLEVYNEQI 501
YGQTG GKT+TM G E RG+ R L+++FR+I+ER + + VS LE+YNE +
Sbjct: 110 CYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEERPT-HAITVRVSYLEIYNESL 168
Query: 502 RDLLAVGSQPGAVSKRLEVRQAGEGMHHVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTN 561
DLL+ G + + + +G+ + GL + + + +L G R + S
Sbjct: 169 FDLLSTLPYVGPSVTPMTIVENPQGV-FIKGLSVHLTSQEEDAFSLLFEGETNRIIASHT 227
Query: 562 ANEHSSRSHCMHCVMV---------------RRELVEWGMHK------------------ 588
N++SSRSHC+ + + + LV+ +
Sbjct: 228 MNKNSSRSHCIFTIYLEAHSRTLSEEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYI 287
Query: 589 -------EQA-MASGSSRKN------SKLTHLLQDSLGGDSKTLMFVQISPNENDLSETL 634
EQA +A G +++ KLTH L+DSLGG+ ++ I L ETL
Sbjct: 288 NKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCNMVLVTNIYGEAAQLEETL 347
Query: 635 CSLNFASRVR 644
SL FASR++
Sbjct: 348 SSLRFASRMK 357
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 109 bits (273), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 100/185 (54%), Gaps = 12/185 (6%)
Query: 406 KKTFKFDAVFGPQ-------ADQVDVFQDTAP-FANSVLDGYNVCIFAYGQTGTGKTFTM 457
+K+F FD F A Q V+ F + +GY+ CIFAYGQTG+GK++TM
Sbjct: 95 EKSFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTM 154
Query: 458 EGTKEARGVNFRTLEELF-RIIKEREKL--YRYDISVSVLEVYNEQIRDLLAVGSQPGAV 514
GT + G+ RT E+LF RI +++ Y++ VS EVYNE +RDLLA P
Sbjct: 155 MGTPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSYFEVYNEHVRDLLA-PVVPNKP 213
Query: 515 SKRLEVRQAGEGMHHVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHC 574
L+VR++ +V L E V + E+ ++ G R V ST N+ SSRSH +
Sbjct: 214 PYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSHAVFT 273
Query: 575 VMVRR 579
+M+++
Sbjct: 274 IMLKQ 278
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 599 KNSKLTHLLQDSLGGDSKTLMFVQISPNENDLSETLCSLNFASRVRGIELGAAKKQLD 656
++S LT LL+DSLGG+SKT M ISP + D ETL +L +A + + I A Q+D
Sbjct: 368 RDSVLTWLLKDSLGGNSKTAMIACISPTDYD--ETLSTLRYADQAKRIRTRAVVNQVD 423
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 99/359 (27%), Positives = 158/359 (44%), Gaps = 83/359 (23%)
Query: 363 GNIRVFCRCRPLNSEETAAGSVMAVDFESVRDGELTVISNGAPK---KTFKFDAVF---- 415
+++V R RP NS E + S + T+++ PK K+F FD +
Sbjct: 4 ASVKVAVRVRPFNSREMSRDSKCIIQMSG---STTTIVNPKQPKETPKSFSFDYSYWSHT 60
Query: 416 GPQ----ADQVDVFQDTAP-FANSVLDGYNVCIFAYGQTGTGKTFTMEGT--KEARGVNF 468
P+ A Q V++D +GYNVCIFAYGQTG GK++TM G K+ +G+
Sbjct: 61 SPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIP 120
Query: 469 RTLEELF-RIIKEREKLYRYDISVSVLEVYNEQIRDLLAVGSQPGAVSKRLEVRQAGEGM 527
+ E+LF RI Y + VS +E+Y E++RDLL ++ L VR+
Sbjct: 121 QLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNK-----GNLRVREHPLLG 175
Query: 528 HHVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMV--RRELVEWG 585
+V L + V + +++ +++ +G+ R V +TN NE SSRSH + ++ +R E
Sbjct: 176 PYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETN 235
Query: 586 MHKEQAMA------SGSSRKNS----------------KLTHL----------------- 606
+ E+ +GS R +S LT L
Sbjct: 236 ITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKN 295
Query: 607 ----------LQDSL---------GGDSKTLMFVQISPNENDLSETLCSLNFASRVRGI 646
+DS+ GG+S+T M +SP + + ETL +L +A R + I
Sbjct: 296 KKKKKTDFIPYRDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQI 354
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 117/229 (51%), Gaps = 23/229 (10%)
Query: 363 GNIRVFCRCRPLNSEETAAGSVMAVDFESVRDGELTVISNGAPK---KTFKFDAVF---- 415
+++V R RP NS E + S + T+++ PK K+F FD +
Sbjct: 20 ASVKVAVRVRPFNSREMSRDSKCIIQMSG---STTTIVNPKQPKETPKSFSFDYSYWSHT 76
Query: 416 GPQ----ADQVDVFQDTAP-FANSVLDGYNVCIFAYGQTGTGKTFTMEGT--KEARGVNF 468
P+ A Q V++D +GYNVCIFAYGQTG GK++TM G K+ +G+
Sbjct: 77 SPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIP 136
Query: 469 RTLEELF-RIIKEREKLYRYDISVSVLEVYNEQIRDLLAVGSQPGAVSKRLEVRQAGEGM 527
+ E+LF RI Y + VS +E+Y E++RDLL ++ L VR+
Sbjct: 137 QLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNK-----GNLRVREHPLLG 191
Query: 528 HHVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVM 576
+V L + V + +++ +++ +G+ R V +TN NE SSRSH + ++
Sbjct: 192 PYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNII 240
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 33/48 (68%)
Query: 599 KNSKLTHLLQDSLGGDSKTLMFVQISPNENDLSETLCSLNFASRVRGI 646
++S LT LL+++LGG+S+T M +SP + + ETL +L +A R + I
Sbjct: 323 RDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQI 370
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 117/229 (51%), Gaps = 23/229 (10%)
Query: 363 GNIRVFCRCRPLNSEETAAGSVMAVDFESVRDGELTVISNGAPK---KTFKFDAVF---- 415
+++V R RP NS E + S + T+++ PK K+F FD +
Sbjct: 4 ASVKVAVRVRPFNSREMSRDSKCIIQMSG---STTTIVNPKQPKETPKSFSFDYSYWSHT 60
Query: 416 GPQ----ADQVDVFQDTAP-FANSVLDGYNVCIFAYGQTGTGKTFTMEGT--KEARGVNF 468
P+ A Q V++D +GYNVCIFAYGQTG GK++TM G K+ +G+
Sbjct: 61 SPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIP 120
Query: 469 RTLEELF-RIIKEREKLYRYDISVSVLEVYNEQIRDLLAVGSQPGAVSKRLEVRQAGEGM 527
+ E+LF RI Y + VS +E+Y E++RDLL ++ L VR+
Sbjct: 121 QLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNK-----GNLRVREHPLLG 175
Query: 528 HHVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVM 576
+V L + V + +++ +++ +G+ R V +TN NE SSRSH + ++
Sbjct: 176 PYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAVFNII 224
Score = 43.5 bits (101), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 33/48 (68%)
Query: 599 KNSKLTHLLQDSLGGDSKTLMFVQISPNENDLSETLCSLNFASRVRGI 646
++S LT LL+++LGG+S+T M +SP + + ETL +L +A R + I
Sbjct: 307 RDSVLTWLLRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQI 354
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 103 bits (258), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 73/229 (31%), Positives = 117/229 (51%), Gaps = 23/229 (10%)
Query: 363 GNIRVFCRCRPLNSEETAAGSVMAVDFESVRDGELTVISNGAPK---KTFKFDAVF---- 415
+++V R RP NS E + S + T+++ PK K+F FD +
Sbjct: 4 ASVKVAVRVRPFNSREMSRDSKCIIQMSG---STTTIVNPKQPKETPKSFSFDYSYWSHT 60
Query: 416 GPQ----ADQVDVFQDTAP-FANSVLDGYNVCIFAYGQTGTGKTFTMEGT--KEARGVNF 468
P+ A Q V++D +GYNVCIFAYGQTG GK++TM G K+ +G+
Sbjct: 61 SPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIP 120
Query: 469 RTLEELF-RIIKEREKLYRYDISVSVLEVYNEQIRDLLAVGSQPGAVSKRLEVRQAGEGM 527
+ E+LF RI Y + VS +E+Y E++RDLL ++ L VR+
Sbjct: 121 QLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKNK-----GNLRVREHPLLG 175
Query: 528 HHVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVM 576
+V L + V + +++ +++ +G+ R V +TN NE SSRSH + ++
Sbjct: 176 PYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNII 224
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 103 bits (256), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 91/335 (27%), Positives = 152/335 (45%), Gaps = 62/335 (18%)
Query: 365 IRVFCRCRPLNSEETAAGSVMAVDFES-----VRDGELTV-ISNGAPKKTFKFDAVFGPQ 418
I V R RPLN +ET + + S V + + V ++ +TF+FD F
Sbjct: 91 ICVCVRKRPLNKKETQMKDLDVITIPSKDVVMVHEPKQKVDLTRYLENQTFRFDYAFDDS 150
Query: 419 ADQVDVFQDTA-PFANSVLDGYNVCIFAYGQTGTGKTFTMEGTKE------ARGVNFRTL 471
A V++ TA P ++ + FAYGQTG+GKT TM G ++G+
Sbjct: 151 APNEMVYRFTARPLVETIFERGMATCFAYGQTGSGKTHTMGGDFSGKNQDCSKGIYALAA 210
Query: 472 EELFRIIKE-REKLYRYDISVSVLEVYNEQIRDLLAVGSQPGAVSKRLEVRQAGEGMHHV 530
++F ++K+ K + + E+Y+ ++ DLL + +L V + G+ V
Sbjct: 211 RDVFLMLKKPNYKKLELQVYATFFEIYSGKVFDLLNRKT-------KLRVLEDGKQQVQV 263
Query: 531 PGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRRE--------LV 582
GL E V + +V +++ G++ R G T+AN HSSRSH + +++RR+ L+
Sbjct: 264 VGLQEREVKCVEDVLKLIDIGNSCRTSGQTSANAHSSRSHAVFQIILRRKGKLHGKFSLI 323
Query: 583 EWGMHKEQAMASGSSRKN--------------------------------SKLTHLLQDS 610
+ ++ A S + R+ SKLT +L+DS
Sbjct: 324 DLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKPHTPFRASKLTQVLRDS 383
Query: 611 -LGGDSKTLMFVQISPNENDLSETLCSLNFASRVR 644
+G +S+T M ISP TL +L +A+RV+
Sbjct: 384 FIGENSRTCMIATISPGMASCENTLNTLRYANRVK 418
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 102 bits (253), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 95/337 (28%), Positives = 151/337 (44%), Gaps = 66/337 (19%)
Query: 365 IRVFCRCRPLNSEETAAGSVMAVDFES-----VRDGELTV-ISNGAPKKTFKFDAVFGPQ 418
I V R RPLN +E A + + S V + +L V ++ + F FD F
Sbjct: 53 ICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDET 112
Query: 419 ADQVDVFQDTA-PFANSVLDGYNVCIFAYGQTGTGKTFTMEGT------KEARGVNFRTL 471
A V++ TA P ++ +G FAYGQTG+GKT TM G ++G+
Sbjct: 113 ASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMAS 172
Query: 472 EELFRIIKEREKLYR---YDISVSVLEVYNEQIRDLLAVGSQPGAVSKRLEVRQAGEGMH 528
++F + + + YR ++ V+ E+YN ++ DLL + +L V + G+
Sbjct: 173 RDVFLL--KNQPCYRKLGLEVYVTFFEIYNGKLFDLLNKKA-------KLRVLEDGKQQV 223
Query: 529 HVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRRE-------- 580
V GL E VN+ +V +++ GS R G T AN +SSRSH +++R +
Sbjct: 224 QVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACFQIILRAKGRMHGKFS 283
Query: 581 LVEWGMHKEQAMASGSSR--------------------------------KNSKLTHLLQ 608
LV+ ++ A S + R + SKLT +L+
Sbjct: 284 LVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLR 343
Query: 609 DS-LGGDSKTLMFVQISPNENDLSETLCSLNFASRVR 644
DS +G +S+T M ISP + TL +L +A RV+
Sbjct: 344 DSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVK 380
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 92/335 (27%), Positives = 146/335 (43%), Gaps = 62/335 (18%)
Query: 365 IRVFCRCRPLNSEETAAGSVMAVDFES-----VRDGELTV-ISNGAPKKTFKFDAVFGPQ 418
I V R RPLN +E A + + S V + +L V ++ + F FD F
Sbjct: 73 ICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDET 132
Query: 419 ADQVDVFQDTA-PFANSVLDGYNVCIFAYGQTGTGKTFTMEGT------KEARGVNFRTL 471
A V++ TA P ++ +G FAYGQTG+GKT TM G ++G+
Sbjct: 133 ASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMAS 192
Query: 472 EELFRIIKE-REKLYRYDISVSVLEVYNEQIRDLLAVGSQPGAVSKRLEVRQAGEGMHHV 530
++F + + R + ++ V+ E+YN ++ DLL + +L V + V
Sbjct: 193 RDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKA-------KLRVLEDSRQQVQV 245
Query: 531 PGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRRE--------LV 582
GL E V +V +++ GS R G T AN +SSRSH +++R + LV
Sbjct: 246 VGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKGRLHGKFSLV 305
Query: 583 EWGMHKEQAMASGSSR--------------------------------KNSKLTHLLQDS 610
+ ++ A S + R + SKLT +L+DS
Sbjct: 306 DLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDS 365
Query: 611 -LGGDSKTLMFVQISPNENDLSETLCSLNFASRVR 644
+G +S+T M ISP + TL +L +A RV+
Sbjct: 366 FIGENSRTCMIAMISPGISSCEYTLNTLRYADRVK 400
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 96.7 bits (239), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 92/335 (27%), Positives = 146/335 (43%), Gaps = 62/335 (18%)
Query: 365 IRVFCRCRPLNSEETAAGSVMAVDFES-----VRDGELTV-ISNGAPKKTFKFDAVFGPQ 418
I V R RPLN +E A + + S V + +L V ++ + F FD F
Sbjct: 1 ICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDET 60
Query: 419 ADQVDVFQDTA-PFANSVLDGYNVCIFAYGQTGTGKTFTMEGT------KEARGVNFRTL 471
A V++ TA P ++ +G FAYGQTG+GKT TM G ++G+
Sbjct: 61 ASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMAS 120
Query: 472 EELFRIIKE-REKLYRYDISVSVLEVYNEQIRDLLAVGSQPGAVSKRLEVRQAGEGMHHV 530
++F + + R + ++ V+ E+YN ++ DLL + +L V + V
Sbjct: 121 RDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLNKKA-------KLRVLEDSRQQVQV 173
Query: 531 PGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRRE--------LV 582
GL E V +V +++ GS R G T AN +SSRSH +++R + LV
Sbjct: 174 VGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACFQILLRTKGRLHGKFSLV 233
Query: 583 EWGMHKEQAMASGSSR--------------------------------KNSKLTHLLQDS 610
+ ++ A S + R + SKLT +L+DS
Sbjct: 234 DLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLRDS 293
Query: 611 -LGGDSKTLMFVQISPNENDLSETLCSLNFASRVR 644
+G +S+T M ISP + TL +L +A RV+
Sbjct: 294 FIGENSRTCMIAMISPGISSCEYTLNTLRYADRVK 328
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 89.4 bits (220), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 83/309 (26%), Positives = 138/309 (44%), Gaps = 63/309 (20%)
Query: 387 VDFESVRDGELTVISNGAPKKTFKFDAVFGPQADQVDVFQD-TAPFANSVLDGYNVCIFA 445
V F DG+ ++ + F FD F Q +++Q P + +L+G+ A
Sbjct: 45 VQFPPWSDGKSLIVD----QNEFHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALA 100
Query: 446 YGQTGTGKTFTMEGT------KEARGVNFRTLEELFRIIKEREKLYRYDISV--SVLEVY 497
YGQTGTGK+++M T E G+ R L ++F + R++ + I V S +E+Y
Sbjct: 101 YGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIY 160
Query: 498 NEQIRDLLAVGSQPGAVSKRLEVRQAGEGMHHVPGLVEAHVNNISEVWEVLQTGSNVRAV 557
NE+ DLL V+ R + R +H + +++ +L+ G+ R V
Sbjct: 161 NEKPFDLLGSTPHMPMVAARCQ-RCTCLPLH-----------SQADLHHILELGTRNRRV 208
Query: 558 GSTNANEHSSRSHCMHCVMV-------RRELVEW------------GMHKEQ-------- 590
TN N +SSRSH + + V R +V+ G+ +++
Sbjct: 209 RPTNMNSNSSRSHAIVTIHVKSKTHHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGL 268
Query: 591 --------AMASGSS---RKNSKLTHLLQDSLGGDSKTLMFVQISPNENDLSETLCSLNF 639
+MA+G + ++S LT +LQ SL S ISP++ DLSETL +L F
Sbjct: 269 LSINKVVMSMAAGHTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRF 328
Query: 640 ASRVRGIEL 648
+ + + L
Sbjct: 329 GTSAKKLRL 337
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 83/309 (26%), Positives = 137/309 (44%), Gaps = 63/309 (20%)
Query: 387 VDFESVRDGELTVISNGAPKKTFKFDAVFGPQADQVDVFQD-TAPFANSVLDGYNVCIFA 445
V F DG+ ++ + F FD F Q +++Q P + +L+G+ A
Sbjct: 45 VQFPPWSDGKSLIVD----QNEFHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALA 100
Query: 446 YGQTGTGKTFTMEGT------KEARGVNFRTLEELFRIIKEREKLYRYDISV--SVLEVY 497
YGQTGTGK+++M T E G+ R L ++F + R++ + I V S +E+Y
Sbjct: 101 YGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIY 160
Query: 498 NEQIRDLLAVGSQPGAVSKRLEVRQAGEGMHHVPGLVEAHVNNISEVWEVLQTGSNVRAV 557
NE+ DLL V+ R + R +H + +++ +L+ G+ R V
Sbjct: 161 NEKPFDLLGSTPHMPMVAARCQ-RCTCLPLH-----------SQADLHHILELGTRNRRV 208
Query: 558 GSTNANEHSSRSHCMHCVMV-------RRELVEW------------GMHKEQ-------- 590
TN N +SSRSH + + V R +V+ G+ +++
Sbjct: 209 RPTNMNSNSSRSHAIVTIHVKSKTHHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGL 268
Query: 591 --------AMASGSS---RKNSKLTHLLQDSLGGDSKTLMFVQISPNENDLSETLCSLNF 639
+MA+G + ++S LT +LQ SL S ISP++ DLSETL +L F
Sbjct: 269 LSINKVVMSMAAGHTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSETLSTLRF 328
Query: 640 ASRVRGIEL 648
+ + L
Sbjct: 329 GTSAKAAAL 337
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 67.0 bits (162), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 72/288 (25%), Positives = 118/288 (40%), Gaps = 62/288 (21%)
Query: 409 FKFDAVFGPQADQVDVFQDTA-PFANSVLDGYNVC-IFAYGQTGTGKTFTMEGTK----- 461
F D VF D V+++T P + + VC FAYGQTG+GKT+TM G++
Sbjct: 52 FIVDKVFDDTVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQS 111
Query: 462 EARGVNFRTLEELFRIIKEREKLYRYDISVSVLEVYNEQIRDLLAVGSQPGAVSKRLEVR 521
+ G+ ++F + +K I +S E+Y ++ DLL A+
Sbjct: 112 DTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKRKMVAAL------- 164
Query: 522 QAGEGMHHVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCV------ 575
+ G+ V L V E+ + G +R +G + N+ SSRSH + +
Sbjct: 165 ENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDIN 224
Query: 576 ----------------------------------MVRRELVEWGMHKEQAMASGSSR--- 598
+ R L+ KE A S +
Sbjct: 225 KNTSLGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLAL---KECIRAMDSDKNHI 281
Query: 599 --KNSKLTHLLQDSLGGDSKTLMFVQISPNENDLSETLCSLNFASRVR 644
++S+LT +L+D G SK++M ISP + +TL +L ++SRV+
Sbjct: 282 PFRDSELTKVLRDIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVK 329
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 38/61 (62%), Gaps = 4/61 (6%)
Query: 591 AMASGSSR----KNSKLTHLLQDSLGGDSKTLMFVQISPNENDLSETLCSLNFASRVRGI 646
A+A G+ ++SK+T +LQDSLGG+ +T + + SP+ + +ET +L F R + I
Sbjct: 13 ALAEGTKTHVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTI 72
Query: 647 E 647
+
Sbjct: 73 K 73
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 38.5 bits (88), Expect = 0.019, Method: Composition-based stats.
Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 4/61 (6%)
Query: 591 AMASGSSR----KNSKLTHLLQDSLGGDSKTLMFVQISPNENDLSETLCSLNFASRVRGI 646
A+A G+ ++SK+T +LQDSL G+ +T + + SP+ + +ET +L F R + I
Sbjct: 17 ALAEGTKTHVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTI 76
Query: 647 E 647
+
Sbjct: 77 K 77
>pdb|2R2I|A Chain A, Myristoylated Guanylate Cyclase Activating Protein-1 With
Calcium Bound
Length = 198
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 61/127 (48%), Gaps = 14/127 (11%)
Query: 219 ECQ---KKELTE---AKRTLEELKRENQLKN------KEYQETWKSLQELQNELMRKSMH 266
EC KK +TE + TL E K+ LKN K ++ +++ ++ + +
Sbjct: 15 ECHQWYKKFMTECPSGQLTLYEFKQFFGLKNLSPSANKYVEQMFETFDFNKDGYIDFMEY 74
Query: 267 VGSLAFAIEGQVKEKSRWFSSLRDLTRRLKIMKMEHINLFEEALAYKKC--AAEISEASS 324
V +L+ ++G+V +K RW+ L D+ I + E +N+ + A +C A E ++
Sbjct: 75 VAALSLVLKGKVDQKLRWYFKLYDVDGNGCIDRGELLNIIKAIRAINRCNEAMTAEEFTN 134
Query: 325 TIQSKIN 331
+ KI+
Sbjct: 135 MVFDKID 141
>pdb|3LHL|A Chain A, Crystal Structure Of A Putative Agmatinase From
Clostridium Difficile
Length = 287
Score = 32.7 bits (73), Expect = 1.0, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 422 VDVFQDTAPFANSVLDGYNVCIFAYGQTGTGKTFTMEGTKEARGVNFRTLEELFRIIK 479
+D F++ + L+G N+ + F GT E GVN+R +E+F+IIK
Sbjct: 182 IDTFENIV----NXLNGKNIYLTIDLDVLDASVFPGTGTPEPGGVNYREFQEIFKIIK 235
>pdb|3HM7|A Chain A, Crystal Structure Of Allantoinase From Bacillus Halodurans
C-125
pdb|3HM7|B Chain B, Crystal Structure Of Allantoinase From Bacillus Halodurans
C-125
pdb|3HM7|C Chain C, Crystal Structure Of Allantoinase From Bacillus Halodurans
C-125
pdb|3HM7|D Chain D, Crystal Structure Of Allantoinase From Bacillus Halodurans
C-125
pdb|3HM7|E Chain E, Crystal Structure Of Allantoinase From Bacillus Halodurans
C-125
pdb|3HM7|F Chain F, Crystal Structure Of Allantoinase From Bacillus Halodurans
C-125
Length = 448
Score = 32.0 bits (71), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 12/80 (15%)
Query: 485 YRYDISVSVLEVYNEQIRDLLAVGSQPGAVSKRLEVRQAGEGMHHVPGLVEAHV--NNIS 542
YR D+++ +++ ++PG++S G G+H PG+V+ HV N
Sbjct: 22 YRADVAIR---------NGIVSAITEPGSISSDDGPAIDGTGLHLFPGMVDVHVHFNEPG 72
Query: 543 EV-WEVLQTGSNVRAVGSTN 561
WE +GS A G
Sbjct: 73 RTEWEGFASGSKSLAAGGVT 92
>pdb|2VWK|A Chain A, Uracil Recognition In Archaeal Dna Polymerases Captured By
X-Ray Crystallography. V93q Polymerase Variant
Length = 773
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 471 LEELFRIIKE-REKLYRYDISVSVLEVYNEQIRDL---LAVGSQPGAVSKRLEVRQAGEG 526
+EE RI+KE EKL +Y++ L +Y + RDL A G AV+KRL A G
Sbjct: 636 VEEAVRIVKEVTEKLSKYEVPPEKLVIYEQITRDLKDYKATGPHV-AVAKRL----AARG 690
Query: 527 MHHVPGLVEAHV 538
+ PG V +++
Sbjct: 691 IKIRPGTVISYI 702
>pdb|2XHB|A Chain A, Crystal Structure Of Dna Polymerase From Thermococcus
Gorgonarius In Complex With Hypoxanthine-Containing Dna
Length = 773
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 471 LEELFRIIKE-REKLYRYDISVSVLEVYNEQIRDL---LAVGSQPGAVSKRLEVRQAGEG 526
+EE RI+KE EKL +Y++ L +Y + RDL A G AV+KRL A G
Sbjct: 636 VEEAVRIVKEVTEKLSKYEVPPEKLVIYEQITRDLKDYKATGPHV-AVAKRL----AARG 690
Query: 527 MHHVPGLVEAHV 538
+ PG V +++
Sbjct: 691 IKIRPGTVISYI 702
>pdb|2VWJ|A Chain A, Uracil Recognition In Archaeal Dna Polymerases Captured By
X-Ray Crystallography
Length = 773
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 471 LEELFRIIKE-REKLYRYDISVSVLEVYNEQIRDL---LAVGSQPGAVSKRLEVRQAGEG 526
+EE RI+KE EKL +Y++ L +Y + RDL A G AV+KRL A G
Sbjct: 636 VEEAVRIVKEVTEKLSKYEVPPEKLVIYEQITRDLKDYKATGPHV-AVAKRL----AARG 690
Query: 527 MHHVPGLVEAHV 538
+ PG V +++
Sbjct: 691 IKIRPGTVISYI 702
>pdb|1TGO|A Chain A, Thermostable B Type Dna Polymerase From Thermococcus
Gorgonarius
Length = 773
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 471 LEELFRIIKE-REKLYRYDISVSVLEVYNEQIRDL---LAVGSQPGAVSKRLEVRQAGEG 526
+EE RI+KE EKL +Y++ L +Y + RDL A G AV+KRL A G
Sbjct: 636 VEEAVRIVKEVTEKLSKYEVPPEKLVIYEQITRDLKDYKATGPHV-AVAKRL----AARG 690
Query: 527 MHHVPGLVEAHV 538
+ PG V +++
Sbjct: 691 IKIRPGTVISYI 702
>pdb|1QQC|A Chain A, Crystal Structure Of An Archaebacterial Dna Polymerase
D.Tok
Length = 773
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 7/71 (9%)
Query: 471 LEELFRIIKE-REKLYRYDISVSVLEVYNEQIRDLLAV-GSQPG-AVSKRLEVRQAGEGM 527
+EE RI+KE EKL R+++ L +Y + RDL + + P AV+KRL A G+
Sbjct: 636 VEEAVRIVKEVTEKLSRHEVPPEKLVIYEQITRDLRSYRATGPHVAVAKRL----AARGI 691
Query: 528 HHVPGLVEAHV 538
PG V +++
Sbjct: 692 KIRPGTVISYI 702
>pdb|3E15|A Chain A, 6-Phosphogluconolactonase From Plasmodium Vivax
pdb|3E15|B Chain B, 6-Phosphogluconolactonase From Plasmodium Vivax
pdb|3E15|C Chain C, 6-Phosphogluconolactonase From Plasmodium Vivax
pdb|3E15|D Chain D, 6-Phosphogluconolactonase From Plasmodium Vivax
Length = 312
Score = 30.8 bits (68), Expect = 4.2, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 28/42 (66%), Gaps = 5/42 (11%)
Query: 467 NFRTLEELFRIIK--EREKLYRYDISVSVLEV---YNEQIRD 503
N+ ++ LF +K E+E+LYR D S +++E YNE+I++
Sbjct: 110 NYNNIKFLFESLKINEKEQLYRPDTSKNIVECVRDYNEKIKN 151
>pdb|2GGZ|A Chain A, Crystal Structure Of Human Guanylate Cyclase Activating
Protein-3
pdb|2GGZ|B Chain B, Crystal Structure Of Human Guanylate Cyclase Activating
Protein-3
Length = 211
Score = 30.0 bits (66), Expect = 6.4, Method: Composition-based stats.
Identities = 33/179 (18%), Positives = 77/179 (43%), Gaps = 10/179 (5%)
Query: 211 YERLKMSYECQKKELTEAKRTLEELKRENQLKNKEYQETWKSLQELQNELMRKSMHVGSL 270
Y M Y + L E K TL L+ NQ NK + + + ++ + + ++
Sbjct: 25 YRTFMMEYPSGLQTLHEFK-TLLGLQGLNQKANKHIDQVYNTFDTNKDGFVDFLEFIAAV 83
Query: 271 AFAIEGQVKEKSRWFSSLRDLTRRLKIMKMEHINLFEEALAYKKCAAEISEASSTIQSKI 330
++ ++++K +W+ L D I K E +++F +A + + + + + +
Sbjct: 84 NLIMQEKMEQKLKWYFKLYDADGNGSIDKNELLDMF---MAVQALNGQQTLSPEEFINLV 140
Query: 331 NHQVQLYEHLKI---KFIEGTKERKELYN---KVLELKGNIRVFCRCRPLNSEETAAGS 383
H++ + ++ +FI G + ++L K + +RV C + + E ++ S
Sbjct: 141 FHKIDINNDGELTLEEFINGMAKDQDLLEIVYKSFDFSNVLRVICNGKQPDMETDSSKS 199
>pdb|1QHT|A Chain A, Dna Polymerase From Thermococcus Sp. 9on-7 Archaeon
Length = 775
Score = 29.6 bits (65), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 40/73 (54%), Gaps = 11/73 (15%)
Query: 471 LEELFRIIKE-REKLYRYDISVSVLEVYNEQI----RDLLAVGSQPGAVSKRLEVRQAGE 525
+EE RI+KE EKL +Y++ L V +EQI RD A G AV+KRL A
Sbjct: 636 VEEAVRIVKEVTEKLSKYEVPPEKL-VIHEQITRDLRDYKATGPHV-AVAKRL----AAR 689
Query: 526 GMHHVPGLVEAHV 538
G+ PG V +++
Sbjct: 690 GVKIRPGTVISYI 702
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.130 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,993,667
Number of Sequences: 62578
Number of extensions: 978078
Number of successful extensions: 3503
Number of sequences better than 100.0: 90
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 3212
Number of HSP's gapped (non-prelim): 153
length of query: 943
length of database: 14,973,337
effective HSP length: 108
effective length of query: 835
effective length of database: 8,214,913
effective search space: 6859452355
effective search space used: 6859452355
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)