Query 002276
Match_columns 943
No_of_seqs 529 out of 2257
Neff 4.9
Searched_HMMs 46136
Date Thu Mar 28 20:27:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002276.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002276hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0239 Kinesin (KAR3 subfamil 100.0 1.7E-79 3.6E-84 722.7 40.9 380 284-673 239-667 (670)
2 KOG0243 Kinesin-like protein [ 100.0 2.7E-74 5.9E-79 684.6 34.4 311 362-678 48-424 (1041)
3 KOG0245 Kinesin-like protein [ 100.0 9.4E-74 2E-78 668.8 23.8 395 363-784 4-468 (1221)
4 KOG4280 Kinesin-like protein [ 100.0 2.9E-73 6.3E-78 652.5 22.3 311 362-678 4-369 (574)
5 PLN03188 kinesin-12 family pro 100.0 2.4E-68 5.2E-73 638.7 28.3 314 350-679 81-467 (1320)
6 KOG0240 Kinesin (SMY1 subfamil 100.0 9.7E-68 2.1E-72 594.6 30.1 287 362-656 6-341 (607)
7 cd01370 KISc_KIP3_like Kinesin 100.0 1.5E-67 3.3E-72 582.2 26.0 275 364-646 1-338 (338)
8 cd01373 KISc_KLP2_like Kinesin 100.0 6.1E-67 1.3E-71 577.3 26.7 274 363-646 1-337 (337)
9 KOG0242 Kinesin-like protein [ 100.0 2.2E-66 4.9E-71 613.1 28.5 305 363-676 6-363 (675)
10 KOG0241 Kinesin-like protein [ 100.0 4.1E-66 9E-71 594.0 28.2 325 363-692 4-399 (1714)
11 cd01368 KISc_KIF23_like Kinesi 100.0 3.5E-65 7.5E-70 565.1 26.5 274 363-644 1-345 (345)
12 cd01365 KISc_KIF1A_KIF1B Kines 100.0 6.7E-65 1.5E-69 564.4 28.6 285 363-653 1-356 (356)
13 cd01367 KISc_KIF2_like Kinesin 100.0 1.3E-64 2.9E-69 555.4 26.3 271 363-644 1-322 (322)
14 cd01364 KISc_BimC_Eg5 Kinesin 100.0 3.9E-63 8.4E-68 549.1 27.4 286 363-654 2-351 (352)
15 cd01366 KISc_C_terminal Kinesi 100.0 7.8E-63 1.7E-67 541.5 28.0 284 362-649 1-329 (329)
16 cd01371 KISc_KIF3 Kinesin moto 100.0 6.8E-63 1.5E-67 544.0 26.5 277 363-646 1-333 (333)
17 cd01376 KISc_KID_like Kinesin 100.0 8.9E-63 1.9E-67 540.1 26.0 271 364-644 1-319 (319)
18 cd01369 KISc_KHC_KIF5 Kinesin 100.0 2.1E-62 4.6E-67 537.6 27.3 275 363-646 2-325 (325)
19 cd01372 KISc_KIF4 Kinesin moto 100.0 2.9E-62 6.3E-67 539.4 26.2 276 364-647 2-341 (341)
20 cd01374 KISc_CENP_E Kinesin mo 100.0 6.2E-62 1.3E-66 533.4 26.7 272 364-646 1-321 (321)
21 cd01375 KISc_KIF9_like Kinesin 100.0 1.6E-61 3.4E-66 533.5 25.5 276 364-644 1-334 (334)
22 smart00129 KISc Kinesin motor, 100.0 1.8E-59 3.9E-64 515.4 28.3 284 364-653 1-335 (335)
23 cd00106 KISc Kinesin motor dom 100.0 9.9E-58 2.1E-62 499.6 27.2 274 364-644 1-328 (328)
24 PF00225 Kinesin: Kinesin moto 100.0 1.9E-58 4.1E-63 506.6 20.2 275 370-646 1-335 (335)
25 KOG0247 Kinesin-like protein [ 100.0 2.3E-54 5E-59 496.1 28.6 288 360-652 28-442 (809)
26 KOG0246 Kinesin-like protein [ 100.0 2.6E-52 5.5E-57 468.7 21.8 277 364-649 209-544 (676)
27 KOG0244 Kinesin-like protein [ 100.0 4.6E-53 1E-57 497.1 10.6 296 371-677 1-349 (913)
28 COG5059 KIP1 Kinesin-like prot 100.0 7.1E-50 1.5E-54 467.7 26.8 243 406-654 55-344 (568)
29 cd01363 Motor_domain Myosin an 100.0 1.9E-36 4E-41 308.6 12.1 132 424-625 8-186 (186)
30 COG5059 KIP1 Kinesin-like prot 98.1 2.7E-08 6E-13 118.4 -10.9 225 340-581 283-517 (568)
31 KOG0250 DNA repair protein RAD 97.5 0.15 3.2E-06 64.6 32.2 16 536-551 600-615 (1074)
32 TIGR02169 SMC_prok_A chromosom 96.7 0.16 3.4E-06 65.2 22.9 9 858-866 1115-1123(1164)
33 TIGR02169 SMC_prok_A chromosom 96.6 0.16 3.4E-06 65.1 22.6 11 537-547 625-635 (1164)
34 PRK11637 AmiB activator; Provi 96.5 0.34 7.5E-06 56.5 22.5 15 566-580 404-418 (428)
35 TIGR02168 SMC_prok_B chromosom 96.5 0.27 6E-06 62.8 22.9 10 857-866 1129-1138(1179)
36 TIGR02168 SMC_prok_B chromosom 96.3 0.4 8.6E-06 61.4 23.0 29 209-237 677-705 (1179)
37 KOG0982 Centrosomal protein Nu 96.2 0.7 1.5E-05 53.6 21.8 36 75-110 22-57 (502)
38 PRK11637 AmiB activator; Provi 96.2 0.8 1.7E-05 53.5 23.0 17 223-239 68-84 (428)
39 PF07888 CALCOCO1: Calcium bin 96.2 0.42 9.1E-06 57.4 20.5 39 208-246 149-187 (546)
40 PF10481 CENP-F_N: Cenp-F N-te 96.2 0.44 9.6E-06 52.4 18.9 28 335-362 162-189 (307)
41 PF07926 TPR_MLP1_2: TPR/MLP1/ 96.2 0.71 1.5E-05 45.7 19.1 71 288-361 61-131 (132)
42 PF04849 HAP1_N: HAP1 N-termin 96.1 0.23 5E-06 55.7 17.0 92 265-356 213-304 (306)
43 PF14662 CCDC155: Coiled-coil 96.0 1.5 3.3E-05 46.3 21.2 123 209-334 36-164 (193)
44 KOG1029 Endocytic adaptor prot 96.0 0.74 1.6E-05 56.6 21.2 35 809-843 961-995 (1118)
45 KOG0996 Structural maintenance 95.9 0.53 1.1E-05 60.1 20.6 21 241-261 440-460 (1293)
46 PF08317 Spc7: Spc7 kinetochor 95.9 1.2 2.7E-05 50.3 22.1 82 282-363 212-293 (325)
47 PF07888 CALCOCO1: Calcium bin 95.9 1.1 2.3E-05 54.0 22.1 26 763-793 485-510 (546)
48 PF04849 HAP1_N: HAP1 N-termin 95.7 0.69 1.5E-05 52.0 18.2 130 205-344 170-299 (306)
49 PRK09039 hypothetical protein; 95.6 1.3 2.8E-05 50.7 20.9 17 348-364 193-209 (343)
50 KOG0161 Myosin class II heavy 95.6 0.99 2.1E-05 61.2 22.4 38 78-115 651-688 (1930)
51 PF09726 Macoilin: Transmembra 95.6 1.1 2.3E-05 55.8 21.4 27 340-366 627-653 (697)
52 COG1196 Smc Chromosome segrega 95.5 1.1 2.4E-05 58.8 22.3 36 847-884 1097-1137(1163)
53 PRK09039 hypothetical protein; 95.3 2.9 6.3E-05 47.8 22.3 23 214-236 44-66 (343)
54 KOG4360 Uncharacterized coiled 95.3 0.89 1.9E-05 53.8 18.0 37 463-501 355-391 (596)
55 PF05667 DUF812: Protein of un 95.2 2 4.2E-05 52.7 21.7 32 209-240 321-352 (594)
56 PRK02224 chromosome segregatio 95.2 1.3 2.8E-05 56.0 21.1 57 310-366 345-401 (880)
57 KOG0933 Structural maintenance 95.2 1.4 3.1E-05 55.7 20.4 22 342-363 899-920 (1174)
58 PHA02562 46 endonuclease subun 95.2 1.1 2.4E-05 53.5 19.3 44 206-249 178-221 (562)
59 KOG0250 DNA repair protein RAD 95.2 1.6 3.6E-05 55.7 21.0 56 206-261 252-315 (1074)
60 PRK03918 chromosome segregatio 95.1 2.2 4.7E-05 53.9 22.4 12 857-868 830-841 (880)
61 KOG0971 Microtubule-associated 95.0 1.8 3.8E-05 54.3 20.0 37 204-240 319-356 (1243)
62 smart00787 Spc7 Spc7 kinetocho 95.0 2.1 4.5E-05 48.5 19.5 83 281-363 206-288 (312)
63 PRK02224 chromosome segregatio 95.0 2 4.3E-05 54.4 21.6 38 328-365 599-636 (880)
64 COG1196 Smc Chromosome segrega 94.9 2.3 5E-05 55.8 22.6 39 601-650 1107-1145(1163)
65 PF14662 CCDC155: Coiled-coil 94.8 6 0.00013 42.0 20.8 47 284-330 93-139 (193)
66 KOG4643 Uncharacterized coiled 94.4 2.9 6.2E-05 53.1 20.0 57 268-324 491-547 (1195)
67 KOG0980 Actin-binding protein 94.3 4.8 0.0001 50.6 21.7 49 273-321 474-522 (980)
68 PF10473 CENP-F_leu_zip: Leuci 94.3 4.4 9.6E-05 41.0 18.0 20 289-308 69-88 (140)
69 PF06818 Fez1: Fez1; InterPro 94.3 5.8 0.00013 42.4 19.7 97 208-304 9-105 (202)
70 PF12128 DUF3584: Protein of u 94.3 5.9 0.00013 52.4 24.1 78 145-239 555-637 (1201)
71 KOG0161 Myosin class II heavy 94.3 3.4 7.4E-05 56.3 21.9 58 305-362 1475-1532(1930)
72 KOG0996 Structural maintenance 94.3 2.2 4.9E-05 54.8 19.1 82 283-364 939-1027(1293)
73 PRK04863 mukB cell division pr 94.3 4.2 9.2E-05 54.7 22.7 43 322-364 443-488 (1486)
74 KOG0980 Actin-binding protein 94.2 3.9 8.4E-05 51.4 20.6 26 284-309 422-447 (980)
75 PRK03918 chromosome segregatio 94.2 3.2 7E-05 52.4 21.0 18 463-480 822-839 (880)
76 PHA02562 46 endonuclease subun 94.2 4 8.7E-05 48.8 20.7 15 466-480 510-524 (562)
77 KOG0977 Nuclear envelope prote 93.9 6.2 0.00013 47.8 21.1 52 315-366 163-214 (546)
78 KOG1029 Endocytic adaptor prot 93.8 1.5 3.3E-05 54.1 15.8 57 183-239 432-488 (1118)
79 KOG0933 Structural maintenance 93.8 6.6 0.00014 50.1 21.5 14 98-111 579-592 (1174)
80 COG1579 Zn-ribbon protein, pos 93.7 8 0.00017 42.4 19.9 109 206-314 28-138 (239)
81 PF04156 IncA: IncA protein; 93.7 2.7 5.9E-05 43.5 16.0 26 210-235 82-107 (191)
82 COG4942 Membrane-bound metallo 93.7 8.3 0.00018 45.4 21.2 33 207-239 43-75 (420)
83 COG1579 Zn-ribbon protein, pos 93.7 13 0.00028 40.8 22.9 97 220-316 28-126 (239)
84 PF14915 CCDC144C: CCDC144C pr 93.7 8.4 0.00018 43.4 20.2 111 207-317 135-245 (305)
85 PF12718 Tropomyosin_1: Tropom 93.6 9.1 0.0002 38.7 19.7 117 213-333 4-120 (143)
86 PF00261 Tropomyosin: Tropomyo 93.6 6.7 0.00014 42.5 19.1 35 326-363 202-236 (237)
87 PF15066 CAGE1: Cancer-associa 93.5 5.6 0.00012 47.0 19.2 84 209-299 310-403 (527)
88 PF09726 Macoilin: Transmembra 93.2 6.3 0.00014 49.3 20.5 34 330-363 596-629 (697)
89 PF05667 DUF812: Protein of un 93.2 3 6.6E-05 51.1 17.4 55 206-260 325-379 (594)
90 PF13851 GAS: Growth-arrest sp 93.1 14 0.0003 39.4 20.7 33 284-316 91-123 (201)
91 PF12718 Tropomyosin_1: Tropom 93.0 11 0.00024 38.1 19.3 27 214-240 19-45 (143)
92 PF15070 GOLGA2L5: Putative go 93.0 11 0.00023 46.7 21.7 28 212-239 83-110 (617)
93 PRK12704 phosphodiesterase; Pr 93.0 9.9 0.00021 46.0 21.2 19 345-363 185-203 (520)
94 TIGR00606 rad50 rad50. This fa 93.0 7.6 0.00016 51.8 22.1 8 909-916 1303-1310(1311)
95 PF15397 DUF4618: Domain of un 93.0 12 0.00026 41.6 19.9 148 212-364 9-164 (258)
96 KOG4643 Uncharacterized coiled 93.0 7.8 0.00017 49.5 20.3 25 602-626 799-825 (1195)
97 KOG0978 E3 ubiquitin ligase in 92.9 11 0.00024 46.9 21.5 45 319-363 571-615 (698)
98 PF00261 Tropomyosin: Tropomyo 92.8 17 0.00036 39.5 22.3 33 326-358 195-227 (237)
99 PF10174 Cast: RIM-binding pro 92.8 11 0.00025 47.6 21.9 86 216-301 273-358 (775)
100 PF00308 Bac_DnaA: Bacterial d 92.8 0.03 6.6E-07 59.5 -0.0 50 407-458 3-52 (219)
101 KOG0971 Microtubule-associated 92.7 10 0.00022 48.0 20.6 39 325-363 508-546 (1243)
102 COG0556 UvrB Helicase subunit 92.6 0.18 3.9E-06 60.0 5.9 90 407-500 3-99 (663)
103 TIGR03319 YmdA_YtgF conserved 92.6 12 0.00026 45.3 21.1 19 345-363 179-197 (514)
104 PF04156 IncA: IncA protein; 92.5 5.3 0.00011 41.4 16.0 26 214-239 79-104 (191)
105 KOG0612 Rho-associated, coiled 92.3 9.1 0.0002 49.8 20.1 14 350-363 675-688 (1317)
106 PF10473 CENP-F_leu_zip: Leuci 92.3 14 0.00031 37.5 20.2 93 209-301 10-102 (140)
107 TIGR00606 rad50 rad50. This fa 92.3 4.3 9.2E-05 54.1 18.4 48 254-301 825-872 (1311)
108 COG3883 Uncharacterized protei 92.2 23 0.00049 39.6 21.6 34 207-240 50-83 (265)
109 PRK00106 hypothetical protein; 92.0 18 0.00038 44.1 21.5 20 345-364 200-219 (535)
110 COG1340 Uncharacterized archae 91.9 25 0.00054 39.8 20.9 55 267-321 181-235 (294)
111 KOG4674 Uncharacterized conser 91.9 14 0.0003 50.3 21.8 36 210-245 1244-1279(1822)
112 PRK04778 septation ring format 91.6 13 0.00029 45.3 20.2 26 202-227 249-274 (569)
113 COG5185 HEC1 Protein involved 91.6 6.1 0.00013 46.7 16.2 50 210-260 265-314 (622)
114 KOG4360 Uncharacterized coiled 91.4 9.9 0.00021 45.5 17.8 92 265-356 212-303 (596)
115 KOG0976 Rho/Rac1-interacting s 91.3 16 0.00035 45.8 19.8 17 166-182 22-38 (1265)
116 KOG0977 Nuclear envelope prote 91.3 18 0.00039 44.0 20.3 24 693-716 342-365 (546)
117 KOG0999 Microtubule-associated 91.3 17 0.00038 43.8 19.6 22 207-228 6-27 (772)
118 PF05701 WEMBL: Weak chloropla 91.3 17 0.00036 44.1 20.4 6 229-234 224-229 (522)
119 PF10186 Atg14: UV radiation r 91.1 22 0.00048 38.7 19.7 25 211-235 22-46 (302)
120 PF13870 DUF4201: Domain of un 91.0 21 0.00046 36.8 21.1 90 211-300 8-98 (177)
121 PF10174 Cast: RIM-binding pro 90.8 21 0.00046 45.3 21.2 42 660-701 666-707 (775)
122 PF10168 Nup88: Nuclear pore c 90.7 9 0.0002 48.1 17.9 30 206-235 562-591 (717)
123 KOG0995 Centromere-associated 90.6 23 0.00051 43.0 20.2 21 119-142 83-103 (581)
124 PF05701 WEMBL: Weak chloropla 90.6 16 0.00034 44.3 19.3 11 229-239 248-258 (522)
125 PF06785 UPF0242: Uncharacteri 90.5 26 0.00055 40.2 19.2 70 249-318 111-180 (401)
126 PRK04778 septation ring format 90.5 27 0.00058 42.7 21.3 49 273-321 370-418 (569)
127 KOG4674 Uncharacterized conser 90.5 22 0.00047 48.5 21.6 31 209-239 654-684 (1822)
128 PF15619 Lebercilin: Ciliary p 90.4 20 0.00043 38.2 17.7 43 211-253 63-105 (194)
129 COG1340 Uncharacterized archae 90.4 28 0.00061 39.3 19.5 21 342-362 214-234 (294)
130 PRK04863 mukB cell division pr 90.2 28 0.00061 47.2 22.6 34 332-365 439-472 (1486)
131 PF10168 Nup88: Nuclear pore c 90.1 11 0.00024 47.4 17.9 58 209-266 536-604 (717)
132 PF05010 TACC: Transforming ac 90.1 31 0.00066 37.3 22.1 31 209-239 23-53 (207)
133 KOG0995 Centromere-associated 90.1 17 0.00037 44.1 18.5 25 212-236 231-255 (581)
134 COG2805 PilT Tfp pilus assembl 90.1 0.15 3.2E-06 57.3 1.7 29 430-458 115-143 (353)
135 KOG0976 Rho/Rac1-interacting s 89.9 33 0.00071 43.3 20.7 67 209-275 85-151 (1265)
136 PF13870 DUF4201: Domain of un 89.9 23 0.0005 36.6 17.4 81 283-363 53-133 (177)
137 KOG0999 Microtubule-associated 89.8 27 0.00058 42.3 19.5 37 283-319 153-189 (772)
138 PRK06893 DNA replication initi 89.5 0.19 4.1E-06 53.7 1.9 47 407-458 11-57 (229)
139 KOG1853 LIS1-interacting prote 89.5 39 0.00084 37.5 19.7 29 212-240 23-51 (333)
140 PF05010 TACC: Transforming ac 89.4 34 0.00075 36.9 20.0 28 332-359 158-185 (207)
141 KOG0964 Structural maintenance 89.4 27 0.00059 44.8 20.0 14 567-580 634-647 (1200)
142 PF08317 Spc7: Spc7 kinetochor 89.3 14 0.00031 41.9 16.7 8 357-364 277-284 (325)
143 PF15619 Lebercilin: Ciliary p 89.2 34 0.00073 36.5 20.5 25 216-240 12-36 (194)
144 COG4372 Uncharacterized protei 89.2 51 0.0011 38.6 21.1 43 247-289 126-168 (499)
145 KOG4673 Transcription factor T 89.0 40 0.00087 41.9 20.4 52 213-264 413-469 (961)
146 KOG0243 Kinesin-like protein [ 88.8 23 0.00051 45.8 19.3 12 82-93 66-77 (1041)
147 KOG0612 Rho-associated, coiled 88.7 24 0.00051 46.3 19.2 46 309-354 611-656 (1317)
148 PF00038 Filament: Intermediat 88.6 36 0.00078 37.9 19.1 59 658-716 216-278 (312)
149 PRK01156 chromosome segregatio 88.6 45 0.00097 42.7 22.2 12 858-869 844-855 (895)
150 KOG2129 Uncharacterized conser 88.6 38 0.00083 39.8 19.1 23 351-373 326-348 (552)
151 PF11559 ADIP: Afadin- and alp 88.6 28 0.0006 35.0 16.5 44 206-249 28-71 (151)
152 PF09789 DUF2353: Uncharacteri 88.5 45 0.00097 38.2 19.6 44 280-323 134-177 (319)
153 PF09730 BicD: Microtubule-ass 88.5 45 0.00098 42.0 21.3 68 658-725 366-437 (717)
154 PF10146 zf-C4H2: Zinc finger- 88.3 14 0.0003 40.3 15.0 44 265-308 32-75 (230)
155 PRK10361 DNA recombination pro 88.0 45 0.00097 40.2 20.1 13 352-364 186-198 (475)
156 PRK06835 DNA replication prote 88.0 0.14 3E-06 58.0 -0.3 55 424-479 168-227 (329)
157 COG4372 Uncharacterized protei 88.0 57 0.0012 38.2 19.8 96 210-312 75-170 (499)
158 PRK01156 chromosome segregatio 87.9 42 0.00092 42.9 21.4 18 462-479 834-851 (895)
159 COG2433 Uncharacterized conser 87.8 19 0.00041 44.1 16.8 76 283-362 433-508 (652)
160 PF08614 ATG16: Autophagy prot 87.6 5 0.00011 42.2 10.9 7 221-227 79-85 (194)
161 KOG0727 26S proteasome regulat 87.6 3.6 7.9E-05 45.6 10.0 118 365-483 99-249 (408)
162 COG2804 PulE Type II secretory 87.6 0.31 6.8E-06 57.8 2.2 30 430-459 248-277 (500)
163 PF13851 GAS: Growth-arrest sp 87.5 43 0.00094 35.7 21.4 50 211-260 29-78 (201)
164 KOG0946 ER-Golgi vesicle-tethe 87.4 11 0.00025 47.1 14.9 35 205-239 681-715 (970)
165 PRK14086 dnaA chromosomal repl 87.2 0.21 4.5E-06 60.9 0.5 52 406-459 282-333 (617)
166 TIGR01843 type_I_hlyD type I s 87.2 54 0.0012 37.4 19.9 13 432-444 321-333 (423)
167 TIGR03007 pepcterm_ChnLen poly 87.0 74 0.0016 37.8 21.8 29 211-239 163-191 (498)
168 KOG0964 Structural maintenance 86.9 33 0.0007 44.2 18.5 22 341-362 470-491 (1200)
169 PRK06620 hypothetical protein; 86.9 0.22 4.9E-06 52.9 0.5 49 407-458 11-62 (214)
170 PF04111 APG6: Autophagy prote 86.8 9 0.0002 43.5 13.1 11 451-461 215-225 (314)
171 PF10267 Tmemb_cc2: Predicted 86.7 48 0.001 39.1 19.0 40 202-241 205-244 (395)
172 KOG4809 Rab6 GTPase-interactin 86.6 55 0.0012 39.8 19.3 52 312-363 364-415 (654)
173 PF05266 DUF724: Protein of un 86.4 28 0.0006 37.0 15.6 60 254-313 99-158 (190)
174 PTZ00454 26S protease regulato 86.4 1.6 3.5E-05 50.9 7.1 50 408-457 141-196 (398)
175 KOG1850 Myosin-like coiled-coi 86.3 69 0.0015 36.7 19.9 33 336-368 300-332 (391)
176 PF10186 Atg14: UV radiation r 86.2 55 0.0012 35.6 19.9 12 349-360 144-155 (302)
177 PF12128 DUF3584: Protein of u 86.2 78 0.0017 42.3 22.9 53 208-260 613-665 (1201)
178 TIGR01242 26Sp45 26S proteasom 86.2 5.4 0.00012 45.5 11.0 17 441-457 157-173 (364)
179 TIGR01843 type_I_hlyD type I s 86.1 69 0.0015 36.6 20.4 6 487-492 367-372 (423)
180 PRK08084 DNA replication initi 86.1 0.3 6.5E-06 52.4 0.9 47 407-458 17-63 (235)
181 KOG0994 Extracellular matrix g 85.9 69 0.0015 42.1 20.5 9 89-98 1374-1382(1758)
182 PRK12377 putative replication 85.8 0.34 7.4E-06 52.9 1.2 49 410-459 72-120 (248)
183 COG0593 DnaA ATPase involved i 85.8 0.66 1.4E-05 54.2 3.6 84 351-459 48-132 (408)
184 COG1474 CDC6 Cdc6-related prot 85.7 0.86 1.9E-05 52.5 4.4 55 428-497 29-84 (366)
185 PRK14088 dnaA chromosomal repl 85.6 0.31 6.7E-06 57.3 0.8 50 406-458 99-148 (440)
186 KOG4603 TBP-1 interacting prot 85.6 36 0.00077 35.8 15.2 21 340-360 160-180 (201)
187 PF07926 TPR_MLP1_2: TPR/MLP1/ 85.5 41 0.00088 33.4 18.8 30 210-239 4-33 (132)
188 PF09730 BicD: Microtubule-ass 85.4 89 0.0019 39.6 21.4 29 213-241 31-59 (717)
189 TIGR02680 conserved hypothetic 85.4 85 0.0019 42.5 22.9 24 214-237 228-251 (1353)
190 TIGR00362 DnaA chromosomal rep 85.3 0.35 7.5E-06 55.8 1.0 51 406-458 104-154 (405)
191 KOG0979 Structural maintenance 85.1 21 0.00045 45.9 15.9 62 238-299 291-352 (1072)
192 PF07111 HCR: Alpha helical co 85.1 96 0.0021 38.9 20.9 29 332-360 335-363 (739)
193 PF05483 SCP-1: Synaptonemal c 84.9 1.2E+02 0.0025 38.2 21.8 47 213-259 517-563 (786)
194 PRK05642 DNA replication initi 84.9 0.4 8.6E-06 51.5 1.2 46 407-458 14-63 (234)
195 PRK10884 SH3 domain-containing 84.9 11 0.00024 40.4 11.9 42 204-245 88-129 (206)
196 PF08581 Tup_N: Tup N-terminal 84.8 22 0.00048 32.8 12.1 60 288-347 6-65 (79)
197 PRK07952 DNA replication prote 84.7 0.42 9E-06 52.1 1.2 50 409-459 69-118 (244)
198 KOG0946 ER-Golgi vesicle-tethe 84.7 55 0.0012 41.5 18.8 24 340-363 804-827 (970)
199 PRK00149 dnaA chromosomal repl 84.7 0.39 8.5E-06 56.2 1.1 51 406-458 116-166 (450)
200 TIGR02928 orc1/cdc6 family rep 84.6 1.1 2.3E-05 50.4 4.5 37 421-457 20-57 (365)
201 KOG0979 Structural maintenance 84.6 72 0.0016 41.4 20.1 57 204-260 631-687 (1072)
202 PF15070 GOLGA2L5: Putative go 84.4 71 0.0015 39.8 20.0 48 206-253 84-134 (617)
203 PRK03992 proteasome-activating 84.4 6 0.00013 45.8 10.5 18 440-457 165-182 (389)
204 PF15254 CCDC14: Coiled-coil d 84.3 68 0.0015 40.5 19.3 27 446-473 635-661 (861)
205 PLN03188 kinesin-12 family pro 84.1 1E+02 0.0022 41.1 21.5 17 347-363 1234-1250(1320)
206 PRK08116 hypothetical protein; 84.0 0.36 7.9E-06 53.1 0.4 51 408-459 81-133 (268)
207 TIGR03319 YmdA_YtgF conserved 83.5 80 0.0017 38.4 19.6 13 466-478 273-285 (514)
208 KOG0249 LAR-interacting protei 83.2 28 0.00061 43.3 15.4 30 209-238 91-120 (916)
209 PF09755 DUF2046: Uncharacteri 83.1 93 0.002 35.6 20.8 35 205-239 23-57 (310)
210 PF14915 CCDC144C: CCDC144C pr 83.0 84 0.0018 35.7 17.9 42 221-262 4-45 (305)
211 PRK14087 dnaA chromosomal repl 83.0 0.47 1E-05 56.0 0.8 50 408-459 111-160 (450)
212 PRK09087 hypothetical protein; 83.0 0.53 1.2E-05 50.4 1.2 47 407-458 16-62 (226)
213 TIGR03420 DnaA_homol_Hda DnaA 83.0 0.55 1.2E-05 48.9 1.2 45 408-457 11-55 (226)
214 PF13514 AAA_27: AAA domain 82.9 93 0.002 41.2 21.4 36 283-318 893-928 (1111)
215 PF08614 ATG16: Autophagy prot 82.9 15 0.00032 38.6 11.8 46 205-250 70-115 (194)
216 PF06785 UPF0242: Uncharacteri 82.8 98 0.0021 35.7 18.9 21 469-497 283-303 (401)
217 KOG0018 Structural maintenance 82.7 74 0.0016 41.6 19.2 17 444-460 616-632 (1141)
218 KOG2991 Splicing regulator [RN 82.7 55 0.0012 36.5 15.9 13 224-236 185-197 (330)
219 KOG0804 Cytoplasmic Zn-finger 82.4 33 0.00072 40.7 15.0 36 283-318 386-421 (493)
220 PF05483 SCP-1: Synaptonemal c 82.4 1.3E+02 0.0029 37.7 20.4 41 680-720 588-628 (786)
221 PRK10884 SH3 domain-containing 82.4 14 0.00031 39.6 11.5 38 212-249 89-126 (206)
222 KOG1937 Uncharacterized conser 82.3 76 0.0016 37.9 17.8 16 351-366 384-399 (521)
223 TIGR03017 EpsF chain length de 82.2 1.1E+02 0.0024 35.8 20.7 30 210-239 172-201 (444)
224 PF15254 CCDC14: Coiled-coil d 82.1 52 0.0011 41.5 17.1 159 197-374 377-569 (861)
225 KOG1937 Uncharacterized conser 81.9 1.2E+02 0.0027 36.2 19.5 36 328-363 345-380 (521)
226 PRK08727 hypothetical protein; 81.7 0.76 1.6E-05 49.3 1.7 45 407-458 14-59 (233)
227 PF12325 TMF_TATA_bd: TATA ele 81.7 36 0.00077 33.8 13.0 23 217-239 17-39 (120)
228 cd00046 DEXDc DEAD-like helica 81.6 0.57 1.2E-05 43.0 0.7 17 443-459 3-19 (144)
229 PF06818 Fez1: Fez1; InterPro 81.5 83 0.0018 34.0 18.9 40 320-359 162-201 (202)
230 PRK00106 hypothetical protein; 81.1 1E+02 0.0022 37.8 19.2 15 465-479 293-307 (535)
231 PF05911 DUF869: Plant protein 80.8 62 0.0013 41.3 17.8 47 206-252 593-642 (769)
232 KOG4673 Transcription factor T 80.7 1.7E+02 0.0036 36.9 23.6 26 85-110 116-149 (961)
233 PRK08903 DnaA regulatory inact 80.4 0.83 1.8E-05 48.1 1.5 47 407-457 13-59 (227)
234 PF12325 TMF_TATA_bd: TATA ele 80.1 38 0.00083 33.6 12.7 39 256-294 21-59 (120)
235 PF04111 APG6: Autophagy prote 80.1 29 0.00062 39.5 13.5 24 213-236 13-36 (314)
236 PRK10865 protein disaggregatio 79.6 7.2 0.00016 49.9 9.5 45 409-457 565-615 (857)
237 PF00769 ERM: Ezrin/radixin/mo 79.4 72 0.0016 35.1 15.9 10 284-293 80-89 (246)
238 PRK00411 cdc6 cell division co 79.1 1 2.3E-05 51.1 1.8 34 424-457 38-72 (394)
239 TIGR02680 conserved hypothetic 78.6 2E+02 0.0044 39.1 22.6 17 223-239 230-246 (1353)
240 KOG0963 Transcription factor/C 78.6 1.8E+02 0.0039 36.1 20.3 23 207-229 119-141 (629)
241 PF04851 ResIII: Type III rest 78.6 0.94 2E-05 44.7 1.1 20 440-459 25-44 (184)
242 PF15066 CAGE1: Cancer-associa 78.5 1.6E+02 0.0035 35.5 21.2 13 82-94 167-179 (527)
243 PF03962 Mnd1: Mnd1 family; I 78.5 17 0.00036 38.5 10.3 54 184-237 44-97 (188)
244 PTZ00112 origin recognition co 78.4 2 4.4E-05 54.6 4.1 31 427-457 766-798 (1164)
245 KOG0994 Extracellular matrix g 78.4 2E+02 0.0042 38.4 20.6 18 211-228 1558-1575(1758)
246 COG1484 DnaC DNA replication p 78.3 0.97 2.1E-05 49.4 1.2 49 409-459 76-124 (254)
247 COG5185 HEC1 Protein involved 78.2 1.2E+02 0.0026 36.6 17.6 35 205-239 326-360 (622)
248 PF04012 PspA_IM30: PspA/IM30 78.1 99 0.0021 32.9 16.2 40 268-307 101-140 (221)
249 KOG0018 Structural maintenance 77.9 85 0.0019 41.0 17.6 40 284-323 301-340 (1141)
250 PRK06526 transposase; Provisio 77.4 0.85 1.8E-05 49.9 0.4 21 437-459 97-117 (254)
251 cd00009 AAA The AAA+ (ATPases 77.1 1.5 3.2E-05 40.7 1.9 24 434-457 13-36 (151)
252 COG2433 Uncharacterized conser 77.0 27 0.00058 42.9 12.5 96 216-322 415-510 (652)
253 COG3883 Uncharacterized protei 77.0 1.3E+02 0.0029 33.7 21.0 33 207-239 43-75 (265)
254 PF14992 TMCO5: TMCO5 family 76.9 1.3E+02 0.0029 34.0 17.0 33 207-239 9-41 (280)
255 TIGR01005 eps_transp_fam exopo 76.8 28 0.0006 43.7 13.4 36 204-239 182-217 (754)
256 PF13401 AAA_22: AAA domain; P 76.5 0.85 1.8E-05 43.1 0.1 18 440-457 4-21 (131)
257 TIGR00634 recN DNA repair prot 76.4 98 0.0021 37.8 17.5 18 463-480 472-489 (563)
258 PF01935 DUF87: Domain of unkn 76.4 1 2.2E-05 47.5 0.7 16 442-457 25-40 (229)
259 PF12846 AAA_10: AAA-like doma 76.2 1.1 2.3E-05 48.0 0.8 19 440-458 1-19 (304)
260 PRK08939 primosomal protein Dn 76.2 0.89 1.9E-05 51.1 0.2 51 409-459 124-175 (306)
261 COG4942 Membrane-bound metallo 76.1 1.8E+02 0.0039 34.7 23.0 54 205-258 55-108 (420)
262 COG0419 SbcC ATPase involved i 75.9 2E+02 0.0043 37.3 20.8 12 858-869 860-871 (908)
263 KOG0249 LAR-interacting protei 75.5 1.3E+02 0.0028 38.0 17.5 46 199-244 102-149 (916)
264 smart00382 AAA ATPases associa 75.4 1.2 2.6E-05 40.6 0.8 18 441-458 3-20 (148)
265 KOG4593 Mitotic checkpoint pro 74.8 2.4E+02 0.0052 35.6 21.2 10 450-459 352-361 (716)
266 KOG0992 Uncharacterized conser 74.7 2.1E+02 0.0045 34.9 20.2 69 205-273 234-313 (613)
267 PF00270 DEAD: DEAD/DEAH box h 74.4 1.6 3.5E-05 42.8 1.5 27 431-459 7-33 (169)
268 PF05673 DUF815: Protein of un 74.4 2.6 5.7E-05 46.3 3.2 129 409-573 24-155 (249)
269 PF07889 DUF1664: Protein of u 74.4 57 0.0012 32.7 12.1 49 213-261 40-88 (126)
270 TIGR02538 type_IV_pilB type IV 74.1 1.5 3.4E-05 53.1 1.5 28 431-458 307-334 (564)
271 COG0419 SbcC ATPase involved i 74.0 2.8E+02 0.006 36.1 21.4 17 346-362 627-643 (908)
272 PF10498 IFT57: Intra-flagella 74.0 85 0.0018 36.6 15.2 112 252-367 242-353 (359)
273 TIGR02533 type_II_gspE general 73.9 1.8 3.8E-05 51.8 1.9 29 430-458 232-260 (486)
274 PF06008 Laminin_I: Laminin Do 73.4 1.5E+02 0.0032 32.6 17.6 18 283-300 124-141 (264)
275 PF13863 DUF4200: Domain of un 73.0 93 0.002 30.0 16.8 32 283-314 78-109 (126)
276 PRK10436 hypothetical protein; 73.0 1.8 3.9E-05 51.5 1.6 28 431-458 209-236 (462)
277 cd01131 PilT Pilus retraction 73.0 1.5 3.2E-05 45.8 0.9 19 440-458 1-19 (198)
278 PF12001 DUF3496: Domain of un 72.9 31 0.00067 33.9 9.7 82 284-376 5-87 (111)
279 TIGR01420 pilT_fam pilus retra 72.3 2 4.3E-05 48.8 1.8 29 430-458 112-140 (343)
280 PF05384 DegS: Sensor protein 72.2 1.3E+02 0.0028 31.4 19.2 27 213-239 24-50 (159)
281 PF10146 zf-C4H2: Zinc finger- 72.2 99 0.0021 33.9 14.4 26 284-309 58-83 (230)
282 PF06008 Laminin_I: Laminin Do 71.6 1.6E+02 0.0036 32.3 19.4 33 205-237 48-80 (264)
283 PRK08181 transposase; Validate 71.3 1.5 3.3E-05 48.5 0.5 42 437-480 105-151 (269)
284 KOG1962 B-cell receptor-associ 71.3 22 0.00048 38.6 9.1 21 288-308 181-201 (216)
285 KOG0978 E3 ubiquitin ligase in 71.1 2.9E+02 0.0064 35.0 21.9 78 286-363 545-622 (698)
286 PF06160 EzrA: Septation ring 71.0 2.6E+02 0.0057 34.4 19.8 31 315-345 195-225 (560)
287 PRK12422 chromosomal replicati 70.8 2 4.3E-05 50.8 1.3 51 406-458 105-159 (445)
288 PF09304 Cortex-I_coil: Cortex 70.7 1.1E+02 0.0024 30.0 12.7 65 659-724 17-81 (107)
289 KOG0962 DNA repair protein RAD 70.5 1.6E+02 0.0036 39.5 17.9 23 341-363 1000-1022(1294)
290 KOG0963 Transcription factor/C 70.4 2.8E+02 0.0061 34.6 19.0 28 288-315 280-307 (629)
291 PF15290 Syntaphilin: Golgi-lo 70.2 1.1E+02 0.0023 34.7 14.1 14 93-106 4-17 (305)
292 PF02994 Transposase_22: L1 tr 70.2 5.1 0.00011 46.4 4.5 51 327-377 150-201 (370)
293 PF10481 CENP-F_N: Cenp-F N-te 69.9 2E+02 0.0043 32.6 19.1 49 226-274 56-104 (307)
294 KOG4460 Nuclear pore complex, 69.9 2.4E+02 0.0051 34.8 17.6 23 343-365 703-725 (741)
295 TIGR03007 pepcterm_ChnLen poly 69.7 2.4E+02 0.0053 33.5 19.1 6 363-368 394-399 (498)
296 COG5008 PilU Tfp pilus assembl 69.6 2.9 6.2E-05 46.7 2.1 35 424-458 109-145 (375)
297 PF15397 DUF4618: Domain of un 69.6 1.9E+02 0.0042 32.3 19.2 61 213-276 71-131 (258)
298 TIGR02525 plasmid_TraJ plasmid 69.5 2.5 5.4E-05 49.0 1.7 26 431-457 141-166 (372)
299 KOG4807 F-actin binding protei 69.5 2.4E+02 0.0052 33.4 18.4 12 229-240 351-362 (593)
300 KOG3091 Nuclear pore complex, 69.4 1.2E+02 0.0025 36.8 15.1 32 205-236 337-368 (508)
301 PF06005 DUF904: Protein of un 68.9 65 0.0014 29.3 10.2 33 209-241 4-36 (72)
302 PRK12402 replication factor C 68.8 1.8 4E-05 47.8 0.5 42 410-458 13-54 (337)
303 PF05911 DUF869: Plant protein 68.6 3.5E+02 0.0075 34.9 20.5 44 273-316 121-164 (769)
304 PF13245 AAA_19: Part of AAA d 68.5 2.7 5.8E-05 37.9 1.4 26 432-458 3-28 (76)
305 KOG0804 Cytoplasmic Zn-finger 68.5 2.5E+02 0.0053 33.9 17.2 14 213-226 325-338 (493)
306 PF06160 EzrA: Septation ring 68.5 2.9E+02 0.0063 34.0 22.1 27 202-228 245-271 (560)
307 TIGR02524 dot_icm_DotB Dot/Icm 68.1 2.8 6.1E-05 48.2 1.8 22 436-457 130-151 (358)
308 PRK13833 conjugal transfer pro 67.8 3.5 7.5E-05 47.0 2.4 29 428-457 133-161 (323)
309 PF12777 MT: Microtubule-bindi 67.7 19 0.00042 41.1 8.3 85 207-298 226-310 (344)
310 PF11932 DUF3450: Protein of u 67.7 1.1E+02 0.0023 33.5 13.7 13 445-457 194-206 (251)
311 PF01576 Myosin_tail_1: Myosin 67.6 1.7 3.8E-05 55.3 0.0 159 207-365 319-505 (859)
312 PRK11519 tyrosine kinase; Prov 67.5 1E+02 0.0022 38.9 15.2 39 201-239 252-290 (719)
313 cd01129 PulE-GspE PulE/GspE Th 67.3 3.1 6.8E-05 45.7 1.9 29 430-458 70-98 (264)
314 COG4026 Uncharacterized protei 67.3 44 0.00096 36.5 10.2 16 224-239 136-151 (290)
315 TIGR00631 uvrb excinuclease AB 67.2 5 0.00011 49.8 3.8 90 409-502 2-98 (655)
316 PLN02939 transferase, transfer 66.8 2.4E+02 0.0051 37.2 18.1 15 612-626 689-703 (977)
317 PF13191 AAA_16: AAA ATPase do 66.8 1.4 3.1E-05 43.8 -0.8 28 430-457 14-41 (185)
318 PF00437 T2SE: Type II/IV secr 66.7 2.4 5.3E-05 45.9 0.9 27 430-457 118-144 (270)
319 PF11802 CENP-K: Centromere-as 66.7 2.3E+02 0.0049 32.0 18.7 27 337-363 156-182 (268)
320 PF01576 Myosin_tail_1: Myosin 66.7 1.9 4E-05 55.0 0.0 20 700-719 743-762 (859)
321 PRK06921 hypothetical protein; 66.2 2.7 5.8E-05 46.3 1.1 20 440-459 117-136 (266)
322 PF13479 AAA_24: AAA domain 65.7 2.9 6.3E-05 44.2 1.2 20 440-459 3-22 (213)
323 PF11802 CENP-K: Centromere-as 65.3 2.4E+02 0.0052 31.8 16.0 17 244-260 23-39 (268)
324 PF09787 Golgin_A5: Golgin sub 65.2 2.7E+02 0.0058 33.9 17.6 45 210-254 275-319 (511)
325 PRK15422 septal ring assembly 65.1 77 0.0017 29.5 9.9 38 211-248 6-43 (79)
326 PLN03229 acetyl-coenzyme A car 64.8 2.5E+02 0.0053 35.9 17.1 16 206-221 508-523 (762)
327 PF12004 DUF3498: Domain of un 64.8 2.1 4.6E-05 51.2 0.0 26 214-239 374-399 (495)
328 PF01637 Arch_ATPase: Archaeal 64.8 2.2 4.8E-05 43.6 0.1 28 430-457 10-37 (234)
329 PF09755 DUF2046: Uncharacteri 64.7 2.6E+02 0.0057 32.1 19.7 25 336-360 179-203 (310)
330 KOG1003 Actin filament-coating 64.6 2.1E+02 0.0046 30.9 18.5 35 284-318 114-148 (205)
331 KOG0240 Kinesin (SMY1 subfamil 64.6 2.4E+02 0.0052 34.9 16.5 10 67-76 73-82 (607)
332 PRK13894 conjugal transfer ATP 64.6 3.7 8E-05 46.6 1.8 28 429-457 138-165 (319)
333 PF07798 DUF1640: Protein of u 64.5 1.4E+02 0.0031 31.0 13.3 40 208-247 50-90 (177)
334 TIGR03015 pepcterm_ATPase puta 64.4 4.6 9.9E-05 43.2 2.4 26 432-457 35-60 (269)
335 PF00448 SRP54: SRP54-type pro 64.2 2.6 5.5E-05 44.4 0.4 16 442-457 3-18 (196)
336 PF07106 TBPIP: Tat binding pr 64.1 35 0.00076 35.0 8.7 65 656-720 70-136 (169)
337 PF07889 DUF1664: Protein of u 63.6 1.5E+02 0.0033 29.8 12.5 48 284-331 66-113 (126)
338 PF13207 AAA_17: AAA domain; P 63.4 2.9 6.2E-05 39.2 0.6 16 442-457 1-16 (121)
339 PF01695 IstB_IS21: IstB-like 63.3 3.7 8E-05 42.5 1.4 19 441-459 48-66 (178)
340 KOG4787 Uncharacterized conser 63.1 3.5E+02 0.0075 33.7 17.2 57 183-239 299-369 (852)
341 TIGR03185 DNA_S_dndD DNA sulfu 63.0 3.8E+02 0.0083 33.4 20.5 16 112-127 83-98 (650)
342 KOG4460 Nuclear pore complex, 63.0 2.8E+02 0.0061 34.2 16.5 21 213-233 592-612 (741)
343 TIGR01069 mutS2 MutS2 family p 62.8 1.2E+02 0.0026 38.8 14.5 88 168-255 468-557 (771)
344 COG3074 Uncharacterized protei 62.8 88 0.0019 28.5 9.5 37 211-247 6-42 (79)
345 PF06248 Zw10: Centromere/kine 62.4 3.8E+02 0.0082 33.0 19.3 16 348-363 160-175 (593)
346 PF04582 Reo_sigmaC: Reovirus 62.3 14 0.00031 42.2 5.8 104 206-309 32-135 (326)
347 PF13166 AAA_13: AAA domain 61.7 4E+02 0.0087 33.2 21.4 26 336-361 446-471 (712)
348 TIGR02782 TrbB_P P-type conjug 61.7 4.3 9.4E-05 45.5 1.7 29 428-457 121-149 (299)
349 PTZ00361 26 proteosome regulat 61.4 23 0.00049 42.2 7.6 16 442-457 219-234 (438)
350 PRK09841 cryptic autophosphory 61.0 1.9E+02 0.004 36.6 15.8 39 201-239 252-290 (726)
351 KOG0335 ATP-dependent RNA heli 60.9 4.2 9.1E-05 48.5 1.5 62 432-499 105-189 (482)
352 TIGR03185 DNA_S_dndD DNA sulfu 60.7 4.1E+02 0.0089 33.2 18.5 7 500-506 619-625 (650)
353 TIGR03545 conserved hypothetic 60.6 1.1E+02 0.0023 37.8 13.1 28 599-626 471-498 (555)
354 PF00004 AAA: ATPase family as 60.6 3.7 8E-05 38.5 0.8 15 443-457 1-15 (132)
355 PRK10698 phage shock protein P 60.3 2.6E+02 0.0055 30.4 16.9 142 206-350 35-181 (222)
356 PRK00409 recombination and DNA 60.2 1.6E+02 0.0035 37.7 15.1 89 167-255 472-562 (782)
357 PF13604 AAA_30: AAA domain; P 60.0 4.1 8.8E-05 42.7 1.0 27 431-457 9-35 (196)
358 PF13094 CENP-Q: CENP-Q, a CEN 59.9 70 0.0015 32.5 9.9 77 638-715 1-77 (160)
359 PRK10929 putative mechanosensi 59.5 2.6E+02 0.0057 37.3 17.0 17 880-896 1067-1083(1109)
360 smart00487 DEXDc DEAD-like hel 59.5 5.7 0.00012 38.8 1.9 29 430-459 15-43 (201)
361 KOG2543 Origin recognition com 59.3 3.7 8.1E-05 47.8 0.7 39 442-500 32-70 (438)
362 PF05622 HOOK: HOOK protein; 59.2 3.1 6.7E-05 51.9 0.0 34 216-249 291-330 (713)
363 PF15290 Syntaphilin: Golgi-lo 59.2 1.5E+02 0.0033 33.5 12.7 16 344-359 151-166 (305)
364 PF01580 FtsK_SpoIIIE: FtsK/Sp 58.8 3.6 7.7E-05 42.7 0.4 17 442-458 40-56 (205)
365 PRK10869 recombination and rep 58.8 4.3E+02 0.0093 32.5 18.8 26 457-482 456-481 (553)
366 KOG4807 F-actin binding protei 58.7 3.8E+02 0.0081 31.9 17.3 27 209-235 291-317 (593)
367 PF09304 Cortex-I_coil: Cortex 58.6 1.9E+02 0.0041 28.4 12.6 18 267-284 18-35 (107)
368 PF03962 Mnd1: Mnd1 family; I 58.4 2.1E+02 0.0046 30.3 13.4 34 208-241 61-94 (188)
369 TIGR00929 VirB4_CagE type IV s 58.4 14 0.00029 46.3 5.4 18 440-457 434-451 (785)
370 KOG4603 TBP-1 interacting prot 58.2 2.6E+02 0.0055 29.8 13.6 8 183-190 48-55 (201)
371 KOG0288 WD40 repeat protein Ti 58.2 3.9E+02 0.0085 31.9 17.4 25 433-457 212-236 (459)
372 PF07106 TBPIP: Tat binding pr 58.1 94 0.002 31.9 10.5 15 342-356 155-169 (169)
373 PHA03011 hypothetical protein; 58.0 54 0.0012 31.7 7.9 89 620-716 22-115 (120)
374 cd01130 VirB11-like_ATPase Typ 58.0 5.3 0.00011 41.2 1.5 29 428-457 14-42 (186)
375 KOG0962 DNA repair protein RAD 57.9 5.5E+02 0.012 34.9 19.2 21 74-94 77-97 (1294)
376 PF12329 TMF_DNA_bd: TATA elem 57.8 84 0.0018 28.5 8.9 45 673-717 6-50 (74)
377 PF01540 Lipoprotein_7: Adhesi 57.6 3.3E+02 0.0071 30.8 18.1 36 204-239 117-155 (353)
378 PF09744 Jnk-SapK_ap_N: JNK_SA 57.5 2.3E+02 0.005 29.5 13.1 100 207-309 55-154 (158)
379 KOG1103 Predicted coiled-coil 57.4 3.7E+02 0.0081 31.4 17.0 6 361-366 298-303 (561)
380 COG4717 Uncharacterized conser 57.3 5.4E+02 0.012 33.6 18.2 22 175-196 139-160 (984)
381 PRK12705 hypothetical protein; 57.3 4.5E+02 0.0097 32.3 21.7 20 345-364 173-192 (508)
382 COG4026 Uncharacterized protei 57.2 2.1E+02 0.0045 31.6 13.0 13 220-232 77-89 (290)
383 PTZ00424 helicase 45; Provisio 56.7 5.6 0.00012 45.2 1.5 27 430-458 57-83 (401)
384 TIGR02977 phageshock_pspA phag 56.5 2.8E+02 0.0061 29.8 18.1 159 206-365 35-217 (219)
385 PF12252 SidE: Dot/Icm substra 56.5 2.1E+02 0.0045 37.8 14.6 92 204-299 1065-1173(1439)
386 PF13086 AAA_11: AAA domain; P 56.5 5.5 0.00012 40.7 1.3 26 432-458 10-35 (236)
387 PF00769 ERM: Ezrin/radixin/mo 56.0 3.2E+02 0.0069 30.2 17.2 9 231-239 13-21 (246)
388 PF09789 DUF2353: Uncharacteri 55.9 3.8E+02 0.0082 31.0 18.2 28 212-239 12-39 (319)
389 TIGR00293 prefoldin, archaeal 55.8 1.3E+02 0.0029 29.1 10.7 25 213-237 3-27 (126)
390 PF05622 HOOK: HOOK protein; 55.7 3.8 8.3E-05 51.1 0.0 77 288-368 327-403 (713)
391 PF02562 PhoH: PhoH-like prote 55.7 6.7 0.00015 42.0 1.8 25 431-457 12-36 (205)
392 COG4962 CpaF Flp pilus assembl 55.3 6.1 0.00013 45.5 1.5 28 429-457 163-190 (355)
393 PRK10929 putative mechanosensi 55.2 5.8E+02 0.012 34.3 19.0 32 283-314 269-300 (1109)
394 KOG0239 Kinesin (KAR3 subfamil 55.2 5.4E+02 0.012 32.6 18.9 34 79-112 28-61 (670)
395 KOG1854 Mitochondrial inner me 54.7 4.3E+02 0.0093 33.2 16.5 30 346-375 465-497 (657)
396 PF08647 BRE1: BRE1 E3 ubiquit 54.6 1.9E+02 0.0042 27.3 12.9 24 223-246 3-26 (96)
397 PRK13342 recombination factor 54.6 6.5 0.00014 45.8 1.6 37 421-457 17-53 (413)
398 PRK13851 type IV secretion sys 54.5 5.2 0.00011 45.9 0.8 29 429-458 152-180 (344)
399 PF13514 AAA_27: AAA domain 54.4 6.7E+02 0.015 33.5 22.2 33 331-363 899-931 (1111)
400 PRK11776 ATP-dependent RNA hel 54.3 6.9 0.00015 45.9 1.8 26 430-457 33-58 (460)
401 PF06309 Torsin: Torsin; Inte 54.2 3.6 7.8E-05 41.0 -0.5 17 441-457 53-70 (127)
402 PF00910 RNA_helicase: RNA hel 54.2 4.4 9.5E-05 38.2 0.1 15 443-457 1-15 (107)
403 PF00580 UvrD-helicase: UvrD/R 54.1 5.1 0.00011 43.2 0.6 20 439-458 12-31 (315)
404 TIGR00763 lon ATP-dependent pr 53.8 24 0.00053 44.6 6.5 16 442-457 349-364 (775)
405 TIGR03499 FlhF flagellar biosy 53.6 5.7 0.00012 44.0 0.9 16 443-458 197-212 (282)
406 PRK11281 hypothetical protein; 53.5 5.2E+02 0.011 34.8 18.3 15 880-894 1070-1084(1113)
407 PRK12723 flagellar biosynthesi 53.5 5.7 0.00012 46.3 0.9 17 441-457 175-191 (388)
408 cd00268 DEADc DEAD-box helicas 53.4 7.9 0.00017 39.6 1.8 26 430-457 28-53 (203)
409 TIGR00635 ruvB Holliday juncti 53.2 4.3 9.4E-05 44.6 -0.1 38 420-457 8-47 (305)
410 TIGR01069 mutS2 MutS2 family p 53.1 3E+02 0.0064 35.4 15.7 13 435-447 718-730 (771)
411 KOG0247 Kinesin-like protein [ 53.0 4.1E+02 0.0089 34.0 16.1 18 240-257 519-536 (809)
412 TIGR01005 eps_transp_fam exopo 52.8 5.8E+02 0.013 32.3 21.1 15 442-456 549-563 (754)
413 cd09234 V_HD-PTP_like Protein- 52.2 3.5E+02 0.0075 31.0 14.9 36 330-365 295-330 (337)
414 PF07058 Myosin_HC-like: Myosi 52.1 4.3E+02 0.0093 30.5 17.7 79 213-295 4-82 (351)
415 KOG4593 Mitotic checkpoint pro 52.1 6.1E+02 0.013 32.3 21.7 10 791-800 638-647 (716)
416 KOG1853 LIS1-interacting prote 51.9 3.9E+02 0.0085 30.0 19.5 12 229-240 51-62 (333)
417 PF04949 Transcrip_act: Transc 51.7 3E+02 0.0065 28.6 14.4 18 283-300 88-105 (159)
418 PF03961 DUF342: Protein of un 51.7 87 0.0019 37.1 10.3 42 332-373 379-422 (451)
419 PF11932 DUF3450: Protein of u 51.7 3.6E+02 0.0077 29.5 18.7 10 360-369 163-172 (251)
420 KOG1924 RhoA GTPase effector D 51.5 1.9E+02 0.0041 37.0 13.0 12 363-374 225-236 (1102)
421 KOG1899 LAR transmembrane tyro 51.5 3.4E+02 0.0074 34.0 14.8 26 218-243 127-152 (861)
422 COG3352 FlaC Putative archaeal 51.4 2.2E+02 0.0047 29.7 11.4 53 267-319 60-112 (157)
423 KOG1003 Actin filament-coating 51.3 3.5E+02 0.0076 29.3 20.2 31 209-239 11-41 (205)
424 PRK11546 zraP zinc resistance 51.2 1.8E+02 0.0038 30.0 10.8 67 654-720 43-109 (143)
425 PF10205 KLRAQ: Predicted coil 51.1 1.4E+02 0.0029 29.2 9.5 35 209-243 5-39 (102)
426 PF09738 DUF2051: Double stran 51.1 2.4E+02 0.0052 32.3 13.1 20 220-239 81-100 (302)
427 PF07724 AAA_2: AAA domain (Cd 51.0 7 0.00015 40.3 1.0 17 441-457 4-20 (171)
428 COG3096 MukB Uncharacterized p 50.9 6.6E+02 0.014 32.4 19.6 36 204-239 845-880 (1480)
429 PF04740 LXG: LXG domain of WX 50.8 3.1E+02 0.0067 28.6 18.3 44 206-249 7-51 (204)
430 PF13166 AAA_13: AAA domain 50.8 5.9E+02 0.013 31.7 22.3 15 349-363 438-452 (712)
431 PF13238 AAA_18: AAA domain; P 50.6 5.9 0.00013 36.9 0.4 15 443-457 1-15 (129)
432 KOG4286 Dystrophin-like protei 50.6 5.6E+02 0.012 33.0 16.6 62 203-267 182-243 (966)
433 smart00763 AAA_PrkA PrkA AAA d 50.4 23 0.0005 41.2 5.1 47 407-457 44-95 (361)
434 COG1201 Lhr Lhr-like helicases 50.4 20 0.00044 45.6 5.0 25 431-457 30-54 (814)
435 PRK11192 ATP-dependent RNA hel 49.5 9 0.0002 44.4 1.7 26 430-457 30-55 (434)
436 KOG2751 Beclin-like protein [S 49.5 4.2E+02 0.0091 31.8 14.8 126 211-345 145-270 (447)
437 PF14197 Cep57_CLD_2: Centroso 49.5 1.7E+02 0.0036 26.5 9.2 40 213-252 2-41 (69)
438 cd08915 V_Alix_like Protein-in 49.4 3.5E+02 0.0077 30.8 14.4 34 335-368 305-338 (342)
439 TIGR00634 recN DNA repair prot 49.3 5.8E+02 0.013 31.3 18.4 26 348-373 378-404 (563)
440 PF02994 Transposase_22: L1 tr 49.2 60 0.0013 37.8 8.3 11 470-480 298-308 (370)
441 PF07728 AAA_5: AAA domain (dy 49.2 6.1 0.00013 38.2 0.2 15 443-457 2-16 (139)
442 PF06414 Zeta_toxin: Zeta toxi 49.0 8.4 0.00018 40.1 1.2 19 439-457 14-32 (199)
443 PF15294 Leu_zip: Leucine zipp 48.9 4.5E+02 0.0098 29.9 15.8 33 211-243 127-159 (278)
444 KOG1899 LAR transmembrane tyro 48.8 4.5E+02 0.0098 33.0 15.2 12 862-873 767-778 (861)
445 PF05970 PIF1: PIF1-like helic 48.7 6.7 0.00015 45.0 0.5 36 419-457 4-39 (364)
446 PRK03947 prefoldin subunit alp 48.7 2.8E+02 0.0061 27.5 12.1 31 207-237 4-34 (140)
447 PRK11388 DNA-binding transcrip 48.7 11 0.00023 46.5 2.2 126 408-555 321-447 (638)
448 PRK13764 ATPase; Provisional 48.4 8.9 0.00019 47.2 1.5 19 440-458 257-275 (602)
449 TIGR02231 conserved hypothetic 48.3 2.4E+02 0.0052 34.1 13.5 34 330-363 140-173 (525)
450 PF05557 MAD: Mitotic checkpoi 48.2 6 0.00013 49.5 0.0 22 339-360 302-323 (722)
451 KOG0288 WD40 repeat protein Ti 47.8 5.7E+02 0.012 30.7 16.2 25 215-239 12-36 (459)
452 KOG4677 Golgi integral membran 47.7 5.9E+02 0.013 30.9 18.2 21 85-107 64-84 (554)
453 PRK04837 ATP-dependent RNA hel 47.6 9.4 0.0002 44.3 1.5 26 430-457 37-62 (423)
454 TIGR00348 hsdR type I site-spe 47.4 9.9 0.00021 47.3 1.7 30 429-459 248-282 (667)
455 PF13671 AAA_33: AAA domain; P 47.3 7.2 0.00016 37.4 0.4 15 443-457 2-16 (143)
456 PF07851 TMPIT: TMPIT-like pro 47.2 2.2E+02 0.0047 33.1 12.0 31 207-237 2-32 (330)
457 PLN03025 replication factor C 46.9 7.8 0.00017 43.4 0.6 17 442-458 36-52 (319)
458 PF10234 Cluap1: Clusterin-ass 46.7 2.1E+02 0.0045 32.3 11.5 98 204-301 164-261 (267)
459 KOG0989 Replication factor C, 46.6 11 0.00024 42.9 1.8 43 415-457 30-74 (346)
460 PRK09183 transposase/IS protei 46.4 8.2 0.00018 42.3 0.7 21 437-459 101-121 (259)
461 KOG2398 Predicted proline-seri 46.4 6.2E+02 0.013 31.8 16.5 28 312-339 155-182 (611)
462 KOG4572 Predicted DNA-binding 46.3 1.2E+02 0.0026 38.6 10.3 161 204-366 997-1170(1424)
463 PHA02544 44 clamp loader, smal 46.1 12 0.00025 41.5 1.8 28 431-458 33-61 (316)
464 PF10046 BLOC1_2: Biogenesis o 46.0 2.7E+02 0.0058 26.5 12.3 20 222-241 13-32 (99)
465 KOG3850 Predicted membrane pro 45.9 5.9E+02 0.013 30.3 16.3 184 121-313 187-378 (455)
466 PRK13900 type IV secretion sys 45.8 8 0.00017 44.1 0.5 27 430-457 151-177 (332)
467 COG1223 Predicted ATPase (AAA+ 45.7 9 0.0002 42.9 0.9 17 441-457 152-168 (368)
468 PF09738 DUF2051: Double stran 45.6 3.3E+02 0.0071 31.2 13.1 10 352-361 236-245 (302)
469 PF04108 APG17: Autophagy prot 45.4 5.9E+02 0.013 30.2 21.3 44 311-355 347-390 (412)
470 PF07794 DUF1633: Protein of u 45.4 4.7E+02 0.01 32.0 14.4 33 204-236 592-624 (790)
471 PRK14722 flhF flagellar biosyn 45.2 9.3 0.0002 44.4 1.0 17 441-457 138-154 (374)
472 KOG3647 Predicted coiled-coil 45.1 3.8E+02 0.0082 30.4 12.9 26 268-293 136-161 (338)
473 cd09237 V_ScBro1_like Protein- 45.1 3.8E+02 0.0083 30.9 13.9 160 210-372 195-356 (356)
474 PRK10590 ATP-dependent RNA hel 45.1 13 0.00027 43.9 2.0 26 430-457 30-55 (456)
475 PF09731 Mitofilin: Mitochondr 45.0 6.7E+02 0.014 30.7 19.2 31 346-376 402-434 (582)
476 PF10805 DUF2730: Protein of u 44.9 1.7E+02 0.0038 28.1 9.4 49 668-716 38-88 (106)
477 PF12329 TMF_DNA_bd: TATA elem 44.8 1.5E+02 0.0032 26.9 8.4 57 664-720 11-67 (74)
478 KOG0354 DEAD-box like helicase 44.8 19 0.00041 45.3 3.5 43 411-456 43-92 (746)
479 TIGR02881 spore_V_K stage V sp 44.6 9.1 0.0002 41.6 0.7 17 441-457 43-59 (261)
480 KOG0926 DEAH-box RNA helicase 44.5 31 0.00066 43.8 5.1 37 439-475 270-320 (1172)
481 COG2256 MGS1 ATPase related to 44.3 12 0.00026 44.0 1.6 43 410-456 22-64 (436)
482 PRK00409 recombination and DNA 44.1 6.7E+02 0.014 32.4 16.9 15 434-448 728-742 (782)
483 TIGR03545 conserved hypothetic 44.0 1.2E+02 0.0026 37.3 10.0 41 215-255 163-205 (555)
484 PRK10536 hypothetical protein; 43.9 13 0.00029 41.3 1.8 41 408-457 51-91 (262)
485 PF05529 Bap31: B-cell recepto 43.6 1.7E+02 0.0038 30.5 10.0 15 209-223 89-103 (192)
486 PF15294 Leu_zip: Leucine zipp 43.4 5.5E+02 0.012 29.2 14.6 26 207-232 130-155 (278)
487 PF05700 BCAS2: Breast carcino 43.2 1.4E+02 0.003 32.3 9.4 54 183-239 113-166 (221)
488 COG1222 RPT1 ATP-dependent 26S 42.9 13 0.00029 43.1 1.7 42 442-483 187-245 (406)
489 KOG0998 Synaptic vesicle prote 42.7 53 0.0011 42.3 7.0 37 203-239 429-465 (847)
490 TIGR02338 gimC_beta prefoldin, 42.6 3.2E+02 0.0069 26.3 11.0 26 212-237 6-31 (110)
491 PRK06547 hypothetical protein; 42.6 17 0.00037 37.5 2.3 26 432-457 7-32 (172)
492 PF01920 Prefoldin_2: Prefoldi 42.5 1.9E+02 0.0041 26.8 9.1 38 213-254 2-39 (106)
493 PRK04406 hypothetical protein; 42.5 1.6E+02 0.0035 26.9 8.2 55 664-718 3-57 (75)
494 PRK01297 ATP-dependent RNA hel 42.3 12 0.00026 44.2 1.3 26 431-458 117-142 (475)
495 PF12761 End3: Actin cytoskele 42.3 1.3E+02 0.0028 32.4 8.7 97 217-313 97-194 (195)
496 KOG3859 Septins (P-loop GTPase 42.1 17 0.00036 41.0 2.3 33 425-457 25-59 (406)
497 PLN03229 acetyl-coenzyme A car 42.0 8.8E+02 0.019 31.3 18.3 136 214-350 434-681 (762)
498 COG0497 RecN ATPase involved i 42.0 7.8E+02 0.017 30.7 16.2 143 214-362 246-388 (557)
499 PRK00080 ruvB Holliday junctio 41.9 9.7 0.00021 42.8 0.4 43 415-457 24-68 (328)
500 PRK02119 hypothetical protein; 41.8 1.4E+02 0.003 27.2 7.7 54 665-718 2-55 (73)
No 1
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=100.00 E-value=1.7e-79 Score=722.67 Aligned_cols=380 Identities=46% Similarity=0.618 Sum_probs=318.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHhhcC
Q 002276 284 WFSSLRDLTRRLKIMKMEHINLFEEALAYKKCAAEISEASSTIQSKINHQVQLYEHLKIKFIEGTKERKELYNKVLELKG 363 (943)
Q Consensus 284 l~~~L~~L~~~l~~~k~e~~~l~~e~~~~~~~~~~i~~~~~~lq~~i~~~~~~~e~l~~kl~~e~~~RrkLhN~lqELKG 363 (943)
....|..|+..+..++.....+..+...+...+.+ ....+...+..+......+.+++ +|+.+||+|||+|+||||
T Consensus 239 ~~~~i~~l~~~l~~l~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~L~~~~~~l~~~~-~e~~~r~kL~N~i~eLkG 314 (670)
T KOG0239|consen 239 IKKKIQALQQELEELKAELKELNDQVSLLTREVQE---ALKESNTLQSDLESLEENLVEKK-KEKEERRKLHNEILELKG 314 (670)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhc
Confidence 33346777777777777666666665544443332 22233333555666667778888 899999999999999999
Q ss_pred CEEEEEEeCCCCchhhccCCeeEEeeeccCCCeEEEEeCCcCc----eeeecceeeCCCCCcccccccchhhHHHhhCCc
Q 002276 364 NIRVFCRCRPLNSEETAAGSVMAVDFESVRDGELTVISNGAPK----KTFKFDAVFGPQADQVDVFQDTAPFANSVLDGY 439 (943)
Q Consensus 364 NIRV~~RVRPl~~~E~~~g~~~~V~~~s~~d~~i~v~~~g~~~----ktF~FD~VF~~~asQeeVFeev~pLV~svLdGy 439 (943)
||||||||||+.+.+.......+++++.. +.+.+....... +.|.||+||+|.++|++||.++.|+|+++||||
T Consensus 315 nIRV~CRvRP~~~~e~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~f~fdkVf~p~~sQ~~VF~e~~~lv~S~lDGY 392 (670)
T KOG0239|consen 315 NIRVFCRVRPLLPSEKQRLQSKVIDTEEQ--GEVQVDSPDKGDKLEPQSFKFDKVFGPLASQDDVFEEVSPLVQSALDGY 392 (670)
T ss_pred CceEEEEecCCCccccccccccccccCCc--ceeEeecCCCCCCCccccceeeeecCCcccHHHHHHHHHHHHHHHhcCc
Confidence 99999999999998877544444444322 334444333222 359999999999999999999999999999999
Q ss_pred ceEEEeeCcccCcccccccc-CCCCCCccHHhHHHHHHHHHhhcccceeEEEEEEEEEecchhhhccccCCCCCCCcccc
Q 002276 440 NVCIFAYGQTGTGKTFTMEG-TKEARGVNFRTLEELFRIIKEREKLYRYDISVSVLEVYNEQIRDLLAVGSQPGAVSKRL 518 (943)
Q Consensus 440 NvcIFAYGQTGSGKTyTM~G-~~e~~GIIPRal~~LF~~i~~~~~~~~y~V~VSflEIYNE~I~DLL~~~~~~~~~~k~L 518 (943)
|+||||||||||||||||.| +++++|||||++++||..+.....+|.|.+.+||+|||||.|+|||++.. ...++
T Consensus 393 nVCIFAYGQTGSGKTyTM~G~~~~~~Giipral~~lF~~~~~~~~g~~y~~~~s~~EIYNe~i~DlL~~~~----~~~k~ 468 (670)
T KOG0239|consen 393 NVCIFAYGQTGSGKTYTMSGPTPEDPGIIPRALEKLFRTITSLKSGWKYDKTVSMLEIYNEAIRDLLSDES----YVGKL 468 (670)
T ss_pred ceeEEEecccCCCccccccCCCcccCCccHHHHHHHHHHHHhhccCceEEeeeehhHHHHHHHHHhccccc----cccce
Confidence 99999999999999999999 68999999999999999999987799999999999999999999998764 34689
Q ss_pred eEEeCCCCceEcCCceEEEecChHHHHHHHHccccccccccCCCccCCCCceeeEEEEEEEEee---------hhchhh-
Q 002276 519 EVRQAGEGMHHVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRRELV---------EWGMHK- 588 (943)
Q Consensus 519 eIred~~g~v~V~gLtev~V~S~eE~~~lL~~G~k~R~~asT~mN~~SSRSHsIftI~V~~~~~---------~~lVDk- 588 (943)
.|+++++|.++|+|++.+.|.+.+++..+++.|..+|++++|.+|++|||||+||+|+|.+.+. +++||.
T Consensus 469 ~I~~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~v~v~g~~~~t~~~~~g~l~LVDLA 548 (670)
T KOG0239|consen 469 EIVDDAEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFRVRIRGINELTGIRVTGVLNLVDLA 548 (670)
T ss_pred eEEEcCCCceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEEEEEeccccCcccccccceeEeecc
Confidence 9999999999999999999999999999999999999999999999999999999999988643 367771
Q ss_pred ----------------h---------------hhhh---cCCCCCcccchHHhhhhcCCCcceeEEEecCCCCcChHhhH
Q 002276 589 ----------------E---------------QAMA---SGSSRKNSKLTHLLQDSLGGDSKTLMFVQISPNENDLSETL 634 (943)
Q Consensus 589 ----------------E---------------sALa---~~sPyRdSKLTrLLQDSLGGNSKTlMIv~ISPs~~~~~ETL 634 (943)
| .||+ .|+||||||||+||||||||++||+|||+|||...++.||+
T Consensus 549 GSER~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~k~~HiPyRNSKLT~lLq~sLGG~sKTLmfv~isP~~~~~~Etl 628 (670)
T KOG0239|consen 549 GSERVSKSGVTGERLKEAQNINKSLSALGDVISALASKRSHIPYRNSKLTQLLQDSLGGDSKTLMFVNISPAAAALFETL 628 (670)
T ss_pred cCcccCcCCCchhhhHHHHHhchhhhhhHHHHHHHhhcCCCCcccccchHHHhHhhhCCccceeeEEEeCccHHHHhhhh
Confidence 1 3443 36799999999999999999999999999999999999999
Q ss_pred HHHHHHhHhhccccccccccCChHHHHHHHHHHHHHHHH
Q 002276 635 CSLNFASRVRGIELGAAKKQLDTSELLRYKQMVEKTKQE 673 (943)
Q Consensus 635 sTLrFAsRak~Ik~~~~~~~~~~~el~rlk~~ie~LK~e 673 (943)
++|+||+|++.+++++++.+....+...+..+...++..
T Consensus 629 ~sL~FA~rv~~~~lG~a~~~~~~~~~~~~~~~~~~~~~~ 667 (670)
T KOG0239|consen 629 CSLRFATRVRSVELGSARKQVSTSDDVSLKRFGQLEKLS 667 (670)
T ss_pred hccchHHHhhceecccccccccccchhhhhhhhhhhhhh
Confidence 999999999999999999999888887777776666544
No 2
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.7e-74 Score=684.60 Aligned_cols=311 Identities=37% Similarity=0.592 Sum_probs=268.5
Q ss_pred cCCEEEEEEeCCCCchhhccCCeeEEeeeccCCCeEEEEeC--C-cCceeeecceeeCCCCCcccccccc-hhhHHHhhC
Q 002276 362 KGNIRVFCRCRPLNSEETAAGSVMAVDFESVRDGELTVISN--G-APKKTFKFDAVFGPQADQVDVFQDT-APFANSVLD 437 (943)
Q Consensus 362 KGNIRV~~RVRPl~~~E~~~g~~~~V~~~s~~d~~i~v~~~--g-~~~ktF~FD~VF~~~asQeeVFeev-~pLV~svLd 437 (943)
--||+|+|||||++.+|....+..+|+++.. ...+.+..+ + .-.++|+||+||||.+.|.+||+.+ +|+|..|+.
T Consensus 48 ~~NIqVivRcRp~n~~E~~~~s~~VVs~~~~-~kEV~v~~~~~sk~~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~eVl~ 126 (1041)
T KOG0243|consen 48 EVNIQVIVRCRPRNDRERKSKSSVVVSCDGI-RKEVAVRQTIASKQIDKTFTFDKVFGPESQQEDLYDQAVSPIIKEVLE 126 (1041)
T ss_pred CCceEEEEEeCCCCchhhhcCCCeEEecCCC-cceEEEecccccccccceeecceeeCcchhHHHHHHHHHHHHHHHHhc
Confidence 3599999999999999999888888887654 334555544 2 2368999999999999999999985 599999999
Q ss_pred CcceEEEeeCcccCcccccccc--------CCCCCCccHHhHHHHHHHHHhhcccceeEEEEEEEEEecchhhhccccCC
Q 002276 438 GYNVCIFAYGQTGTGKTFTMEG--------TKEARGVNFRTLEELFRIIKEREKLYRYDISVSVLEVYNEQIRDLLAVGS 509 (943)
Q Consensus 438 GyNvcIFAYGQTGSGKTyTM~G--------~~e~~GIIPRal~~LF~~i~~~~~~~~y~V~VSflEIYNE~I~DLL~~~~ 509 (943)
|||||||||||||+||||||+| -+.+.|||||++.+||..+.... ..|.|+|||+|+|||.|+|||++..
T Consensus 127 GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~~--~EYsvKVSfLELYNEEl~DLLa~~~ 204 (1041)
T KOG0243|consen 127 GYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEAQG--AEYSVKVSFLELYNEELTDLLASED 204 (1041)
T ss_pred cCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHhcC--CeEEEEEEehhhhhHHHHHhcCCcc
Confidence 9999999999999999999999 46789999999999999998765 5899999999999999999999876
Q ss_pred CCCCCcccceEEeCC-----CCceEcCCceEEEecChHHHHHHHHccccccccccCCCccCCCCceeeEEEEEEEEe---
Q 002276 510 QPGAVSKRLEVRQAG-----EGMHHVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRREL--- 581 (943)
Q Consensus 510 ~~~~~~k~LeIred~-----~g~v~V~gLtev~V~S~eE~~~lL~~G~k~R~~asT~mN~~SSRSHsIftI~V~~~~--- 581 (943)
... +.+.++.++ .|+++|.||.++.|+++.|++.+|.+|...|.||+|.||++|||||+||+|+|....
T Consensus 205 ~~~---~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAaTl~N~~SSRSHsIFsItvhike~t~ 281 (1041)
T KOG0243|consen 205 TSD---KKLRIKDDSTIVDGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAATLMNDQSSRSHSIFSITVHIKENTP 281 (1041)
T ss_pred ccc---cccccccCCcccCCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHHHHhhhhccccceEEEEEEEEecCCC
Confidence 421 456666655 689999999999999999999999999999999999999999999999999995432
Q ss_pred ---------ehhchh-----------------hh---------------hhhh---cCCCCCcccchHHhhhhcCCCcce
Q 002276 582 ---------VEWGMH-----------------KE---------------QAMA---SGSSRKNSKLTHLLQDSLGGDSKT 617 (943)
Q Consensus 582 ---------~~~lVD-----------------kE---------------sALa---~~sPyRdSKLTrLLQDSLGGNSKT 617 (943)
.+++|| +| .||. .|+|||+|||||||||||||.+||
T Consensus 282 ~geelvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe~s~HIPYRESKLTRLLQDSLGGkTKT 361 (1041)
T KOG0243|consen 282 EGEELVKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVEHSGHIPYRESKLTRLLQDSLGGKTKT 361 (1041)
T ss_pred cchhhHhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHccCCCCCchHHHHHHHHHHHhCCCcee
Confidence 237777 22 3443 468999999999999999999999
Q ss_pred eEEEecCCCCcChHhhHHHHHHHhHhhccccccccccCChH--HHHHHHHHHHHHHHHHhhhh
Q 002276 618 LMFVQISPNENDLSETLCSLNFASRVRGIELGAAKKQLDTS--ELLRYKQMVEKTKQELKSRD 678 (943)
Q Consensus 618 lMIv~ISPs~~~~~ETLsTLrFAsRak~Ik~~~~~~~~~~~--el~rlk~~ie~LK~eL~~~~ 678 (943)
+||+||||+..+++||++||.||.|||+|+|+|..|+.-.. -+..|-.+|++||.+|....
T Consensus 362 ~iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~llKd~~~EIerLK~dl~AaR 424 (1041)
T KOG0243|consen 362 CIIATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERLKRDLAAAR 424 (1041)
T ss_pred EEEEEeCCCcccHHHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 99999999999999999999999999999999999875432 24458888888888876543
No 3
>KOG0245 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=9.4e-74 Score=668.76 Aligned_cols=395 Identities=27% Similarity=0.425 Sum_probs=317.4
Q ss_pred CCEEEEEEeCCCCchhhccCCeeEEeeeccCCCeEEEEeCC--cCceeeecceeeCCC-------CCcccccccch-hhH
Q 002276 363 GNIRVFCRCRPLNSEETAAGSVMAVDFESVRDGELTVISNG--APKKTFKFDAVFGPQ-------ADQVDVFQDTA-PFA 432 (943)
Q Consensus 363 GNIRV~~RVRPl~~~E~~~g~~~~V~~~s~~d~~i~v~~~g--~~~ktF~FD~VF~~~-------asQeeVFeev~-pLV 432 (943)
.+|.|.|||||++..|....+.++|.+. ..+.+++... .....|+||+.|+.. ++|..||++++ +++
T Consensus 4 ssv~VAVRVRPfn~rE~s~~~k~Vvqm~---gn~ttii~~~~~k~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL 80 (1221)
T KOG0245|consen 4 SSVKVAVRVRPFNAREKSRDAKCVVQMQ---GNTTTIINPKGSKDAPKFTFDYSYWSHDSEDPHFASQKQVYEDLGREML 80 (1221)
T ss_pred CceEEEEEeccchhhhhhcccceEEEec---CCceeeecCCCcccCCceecceeeecCCCCCCchhhHHHHHHHHhHHHH
Confidence 4799999999999999999888888775 3344554432 234569999999764 68999999998 999
Q ss_pred HHhhCCcceEEEeeCcccCccccccccCC--CCCCccHHhHHHHHHHHHh-hcccceeEEEEEEEEEecchhhhccccCC
Q 002276 433 NSVLDGYNVCIFAYGQTGTGKTFTMEGTK--EARGVNFRTLEELFRIIKE-REKLYRYDISVSVLEVYNEQIRDLLAVGS 509 (943)
Q Consensus 433 ~svLdGyNvcIFAYGQTGSGKTyTM~G~~--e~~GIIPRal~~LF~~i~~-~~~~~~y~V~VSflEIYNE~I~DLL~~~~ 509 (943)
+.+++|||+||||||||||||||||+|.. +++|||||++++||..+.. ..+...|.|.|||+|||||+|+|||+...
T Consensus 81 ~~AfEGYN~ClFAYGQTGSGKSYTMMG~~~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~p~ 160 (1221)
T KOG0245|consen 81 DHAFEGYNVCLFAYGQTGSGKSYTMMGFQEPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNAPK 160 (1221)
T ss_pred HHHhcccceEEEEeccCCCCcceeeeccCCCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhCCC
Confidence 99999999999999999999999999987 8999999999999999987 45568999999999999999999998321
Q ss_pred CCCCCcccceEEeCCCCceEcCCceEEEecChHHHHHHHHccccccccccCCCccCCCCceeeEEEEEEEEee-------
Q 002276 510 QPGAVSKRLEVRQAGEGMHHVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRRELV------- 582 (943)
Q Consensus 510 ~~~~~~k~LeIred~~g~v~V~gLtev~V~S~eE~~~lL~~G~k~R~~asT~mN~~SSRSHsIftI~V~~~~~------- 582 (943)
.+..|+||+++--|.||.+|+.+.|+|..|+..+|..|++.|++|+|+||+.|||||+||+|.+.+...
T Consensus 161 ----~kg~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~~~~~l~ 236 (1221)
T KOG0245|consen 161 ----SKGGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHDQDTGLD 236 (1221)
T ss_pred ----CCCCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeeccccCCCc
Confidence 245799999999999999999999999999999999999999999999999999999999999876432
Q ss_pred ------hhchh-----------------hh---------------hhhhc----------CCCCCcccchHHhhhhcCCC
Q 002276 583 ------EWGMH-----------------KE---------------QAMAS----------GSSRKNSKLTHLLQDSLGGD 614 (943)
Q Consensus 583 ------~~lVD-----------------kE---------------sALa~----------~sPyRdSKLTrLLQDSLGGN 614 (943)
.++|| +| +||+. .+|||||.|||||+++||||
T Consensus 237 sek~SKIsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLkEnLGGN 316 (1221)
T KOG0245|consen 237 SEKVSKISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLKENLGGN 316 (1221)
T ss_pred ceeeeeeeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHHHhcCCc
Confidence 25566 22 34431 36999999999999999999
Q ss_pred cceeEEEecCCCCcChHhhHHHHHHHhHhhccccccccccCChHHHHH-HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 002276 615 SKTLMFVQISPNENDLSETLCSLNFASRVRGIELGAAKKQLDTSELLR-YKQMVEKTKQELKSRDVQSKRMEDTIHGLDL 693 (943)
Q Consensus 615 SKTlMIv~ISPs~~~~~ETLsTLrFAsRak~Ik~~~~~~~~~~~el~r-lk~~ie~LK~eL~~~~~q~~~lE~~i~~l~~ 693 (943)
|||.||++|||++.||+|||+|||||.|||+|++++++|+.++..++| |++++.+||..+..........+..-
T Consensus 317 SKTaMIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdpnaKLIRELreEv~rLksll~~~~~~~~~~~~~p----- 391 (1221)
T KOG0245|consen 317 SKTAMIAALSPADINYEETLSTLRYADRAKQIVNNAVVNEDPNAKLIRELREEVARLKSLLRAQGLGDIAVEGSP----- 391 (1221)
T ss_pred chhhhhhccChhhcChHHHHHHHHHhhHhhhhhccceeCCCccHHHHHHHHHHHHHHHHHHhccccccccccCCc-----
Confidence 999999999999999999999999999999999999999999988776 99999999998876543222211110
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH-HhhcccccccccccccccccchhhcCCcc
Q 002276 694 KLKDKDLKIKSLQDKVKELETQLLVERKLARQHVDTKIAEQHLKQQQQEE-LKYCTIEATTWKSFAIKVISPIEKENNPE 772 (943)
Q Consensus 694 kl~e~d~~i~~LqekikeLE~qL~~erkl~rq~~~~~i~eq~~~q~q~e~-l~~~~~~~~~~~~~~~~~~~~~eken~p~ 772 (943)
.......++.++.+++++-|+++.+..+.|.+.+..+ +...++++. |...-. +...|+ .-+-|.
T Consensus 392 ~~~~~~~~~e~~~~~L~E~Ek~mael~etW~EKl~~a----Eair~e~~~~L~emGv-a~~~D~----------~kk~ph 456 (1221)
T KOG0245|consen 392 SALLSQPEIEELRERLQETEKIMAELNETWEEKLREA----EAIRMEREALLAEMGV-AVREDG----------GKKTPH 456 (1221)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhHHHHHHhcCc-eeeecC----------CccCcc
Confidence 0002234567777788888887777777777654442 222233333 333322 222222 146789
Q ss_pred cccCCCCCCCCC
Q 002276 773 MTEQPRLPNRTG 784 (943)
Q Consensus 773 ~~~~~~~p~~~~ 784 (943)
+.+.-.||-.+|
T Consensus 457 LVNLneDPllSe 468 (1221)
T KOG0245|consen 457 LVNLNEDPLLSE 468 (1221)
T ss_pred eeccCCCchhhc
Confidence 999999997676
No 4
>KOG4280 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.9e-73 Score=652.50 Aligned_cols=311 Identities=38% Similarity=0.559 Sum_probs=273.4
Q ss_pred cCCEEEEEEeCCCCchhhccCCeeEEeeeccCCCeEEEEe----CCcCceeeecceeeCCCCCcccccccch-hhHHHhh
Q 002276 362 KGNIRVFCRCRPLNSEETAAGSVMAVDFESVRDGELTVIS----NGAPKKTFKFDAVFGPQADQVDVFQDTA-PFANSVL 436 (943)
Q Consensus 362 KGNIRV~~RVRPl~~~E~~~g~~~~V~~~s~~d~~i~v~~----~g~~~ktF~FD~VF~~~asQeeVFeev~-pLV~svL 436 (943)
.-+|+|++||||++..+...+...++.++... +.+.+.. ...+.++|+||+||+++++|++||+.++ |+|++|+
T Consensus 4 ~~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~ftfD~vf~~~stQ~dvy~~~~~~lV~svl 82 (574)
T KOG4280|consen 4 ACKVKVVVRVRPLSAAERSELLKSILSVDPAH-GRVSLKNPVAGIEGKPKSFTFDAVFDSDSTQDDVYQETVAPLVESVL 82 (574)
T ss_pred ccceeEEEeecCCCchhhhhhhcccccccccc-ceeeecCCcccccCCCCCceeeeeecCCCCHHHHHHHHhHHHHHHHh
Confidence 35899999999999988777666666554332 2223322 1234678999999999999999999987 9999999
Q ss_pred CCcceEEEeeCcccCccccccccC-CCCCCccHHhHHHHHHHHHhhcccceeEEEEEEEEEecchhhhccccCCCCCCCc
Q 002276 437 DGYNVCIFAYGQTGTGKTFTMEGT-KEARGVNFRTLEELFRIIKEREKLYRYDISVSVLEVYNEQIRDLLAVGSQPGAVS 515 (943)
Q Consensus 437 dGyNvcIFAYGQTGSGKTyTM~G~-~e~~GIIPRal~~LF~~i~~~~~~~~y~V~VSflEIYNE~I~DLL~~~~~~~~~~ 515 (943)
+|||+||||||||||||||||+|+ ++..|||||++.+||..|+.+.....|.|+|||+|||||.|+|||++.+ .
T Consensus 83 ~GyNgtvFaYGQTGsGKTyTM~G~~~~~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~~~~-----~ 157 (574)
T KOG4280|consen 83 EGYNGTVFAYGQTGSGKTYTMIGPDPELRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDLLSPVN-----P 157 (574)
T ss_pred cccCceEEEeccCCCCCceEeeCCChhhCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHHhCccC-----c
Confidence 999999999999999999999999 6789999999999999999987666899999999999999999998765 2
Q ss_pred ccceEEeCCCCceEcCCceEEEecChHHHHHHHHccccccccccCCCccCCCCceeeEEEEEEEEe------------eh
Q 002276 516 KRLEVRQAGEGMHHVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRREL------------VE 583 (943)
Q Consensus 516 k~LeIred~~g~v~V~gLtev~V~S~eE~~~lL~~G~k~R~~asT~mN~~SSRSHsIftI~V~~~~------------~~ 583 (943)
+.|.|++++..|+||+||+++.|.|+++++.+|..|.++|++++|.||..|||||+||+|+|.... .+
T Consensus 158 ~~l~lre~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH~ift~~i~~~~~~~~~~~~~~~~rl 237 (574)
T KOG4280|consen 158 KGLELREDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSHAIFTIHIESSEKSDGGLMSGRSSKL 237 (574)
T ss_pred CCceeeEcCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccceEEEEEEEEeecccCCCcccccccee
Confidence 579999999999999999999999999999999999999999999999999999999999998721 23
Q ss_pred hchh-----------------hh---------------hhhh----cCCCCCcccchHHhhhhcCCCcceeEEEecCCCC
Q 002276 584 WGMH-----------------KE---------------QAMA----SGSSRKNSKLTHLLQDSLGGDSKTLMFVQISPNE 627 (943)
Q Consensus 584 ~lVD-----------------kE---------------sALa----~~sPyRdSKLTrLLQDSLGGNSKTlMIv~ISPs~ 627 (943)
++|| +| .||+ .|+||||||||+||||||||||||+||+||||+.
T Consensus 238 nlvDLagsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~~~HIPYRdSkLT~LLqdSLGGN~kT~mianvsp~~ 317 (574)
T KOG4280|consen 238 NLVDLAGSERQSKTGAEGERLKEATNINLSLSALGNVISALVDGSKTHIPYRDSKLTRLLQDSLGGNSKTTMIANVSPSS 317 (574)
T ss_pred eeeeccchhhhcccCccchhhhhhcccchhHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHcCCCceEEEEEecCchh
Confidence 6777 12 2332 2789999999999999999999999999999999
Q ss_pred cChHhhHHHHHHHhHhhccccccccccCCh-HHHHHHHHHHHHHHHHHhhhh
Q 002276 628 NDLSETLCSLNFASRVRGIELGAAKKQLDT-SELLRYKQMVEKTKQELKSRD 678 (943)
Q Consensus 628 ~~~~ETLsTLrFAsRak~Ik~~~~~~~~~~-~el~rlk~~ie~LK~eL~~~~ 678 (943)
.+++||++|||||+|||.|+|.|.+|+++. ..+..|+.+|+.|+.++...+
T Consensus 318 ~~~~ETlsTLrfA~Rak~I~nk~~ined~~~~~~~~lq~ei~~Lk~~l~~~~ 369 (574)
T KOG4280|consen 318 DNYEETLSTLRFAQRAKAIKNKPVINEDPKDALLRELQEEIERLKKELDPGG 369 (574)
T ss_pred hhhHHHHHHHHHHHHHHHhhccccccCCcchhhHHHHHHHHHHHHHhhcccc
Confidence 999999999999999999999999999988 667779999999999988754
No 5
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=2.4e-68 Score=638.74 Aligned_cols=314 Identities=33% Similarity=0.532 Sum_probs=264.0
Q ss_pred HHHHHHhHHHhh----cCCEEEEEEeCCCCchhhccCCeeEEeeeccCCCeEEEEeCCcCceeeecceeeCCCCCccccc
Q 002276 350 ERKELYNKVLEL----KGNIRVFCRCRPLNSEETAAGSVMAVDFESVRDGELTVISNGAPKKTFKFDAVFGPQADQVDVF 425 (943)
Q Consensus 350 ~RrkLhN~lqEL----KGNIRV~~RVRPl~~~E~~~g~~~~V~~~s~~d~~i~v~~~g~~~ktF~FD~VF~~~asQeeVF 425 (943)
++|+|+.+-..- .++|+|||||||++..|. +...++.+ .+..+.+. .+.|.||+||+++++|++||
T Consensus 81 l~rk~~~~~~~en~~~ds~VkV~VRVRPl~~~E~--g~~iV~~~---s~dsl~I~-----~qtFtFD~VFdp~aTQedVF 150 (1320)
T PLN03188 81 LKRKLSAETAPENGVSDSGVKVIVRMKPLNKGEE--GEMIVQKM---SNDSLTIN-----GQTFTFDSIADPESTQEDIF 150 (1320)
T ss_pred hhccccccccccccCCCCCeEEEEEcCCCCCccC--CCeeEEEc---CCCeEEEe-----CcEEeCCeeeCCCCCHHHHH
Confidence 344555444333 579999999999998753 33333322 23334432 36899999999999999999
Q ss_pred ccch-hhHHHhhCCcceEEEeeCcccCccccccccCC----------CCCCccHHhHHHHHHHHHhh-----cccceeEE
Q 002276 426 QDTA-PFANSVLDGYNVCIFAYGQTGTGKTFTMEGTK----------EARGVNFRTLEELFRIIKER-----EKLYRYDI 489 (943)
Q Consensus 426 eev~-pLV~svLdGyNvcIFAYGQTGSGKTyTM~G~~----------e~~GIIPRal~~LF~~i~~~-----~~~~~y~V 489 (943)
+.++ |+|+++++|||+||||||||||||||||+|+. .++|||||++++||..+... ...+.|.|
T Consensus 151 e~vv~PLV~svLdGyNaTIFAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V 230 (1320)
T PLN03188 151 QLVGAPLVENCLAGFNSSVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQC 230 (1320)
T ss_pred HHHHHHHHHHHhcCCcceeecCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEE
Confidence 9986 99999999999999999999999999999963 46899999999999998753 23568999
Q ss_pred EEEEEEEecchhhhccccCCCCCCCcccceEEeCCCCceEcCCceEEEecChHHHHHHHHccccccccccCCCccCCCCc
Q 002276 490 SVSVLEVYNEQIRDLLAVGSQPGAVSKRLEVRQAGEGMHHVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRS 569 (943)
Q Consensus 490 ~VSflEIYNE~I~DLL~~~~~~~~~~k~LeIred~~g~v~V~gLtev~V~S~eE~~~lL~~G~k~R~~asT~mN~~SSRS 569 (943)
+|||+|||||+|||||++.. ..|.|++++.++++|.||+++.|.|+++++.+|..|..+|++++|.||..||||
T Consensus 231 ~vSyLEIYNEkI~DLLsp~~------k~L~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~tasT~mN~~SSRS 304 (1320)
T PLN03188 231 RCSFLEIYNEQITDLLDPSQ------KNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRS 304 (1320)
T ss_pred EEEEEeeecCcceecccccc------CCceEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhccceeccCCCCCccCCC
Confidence 99999999999999997643 469999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEEEEEEEe-------------ehhchh-----------------hh---------------hhhh--------cCC
Q 002276 570 HCMHCVMVRREL-------------VEWGMH-----------------KE---------------QAMA--------SGS 596 (943)
Q Consensus 570 HsIftI~V~~~~-------------~~~lVD-----------------kE---------------sALa--------~~s 596 (943)
|+||+|.|.... ..++|| +| .+|+ .++
T Consensus 305 HaIFtI~Ves~~k~~~dg~ss~r~SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~ALae~Sq~gk~~HI 384 (1320)
T PLN03188 305 HSVFTCVVESRCKSVADGLSSFKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQTGKQRHI 384 (1320)
T ss_pred ceeEEEEEEEeecccCCCCcceEEEEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHHHHhhccCCCCcC
Confidence 999999986421 235566 12 2332 367
Q ss_pred CCCcccchHHhhhhcCCCcceeEEEecCCCCcChHhhHHHHHHHhHhhccccccccccCChHHHHHHHHHHHHHHHHHhh
Q 002276 597 SRKNSKLTHLLQDSLGGDSKTLMFVQISPNENDLSETLCSLNFASRVRGIELGAAKKQLDTSELLRYKQMVEKTKQELKS 676 (943)
Q Consensus 597 PyRdSKLTrLLQDSLGGNSKTlMIv~ISPs~~~~~ETLsTLrFAsRak~Ik~~~~~~~~~~~el~rlk~~ie~LK~eL~~ 676 (943)
||||||||+||||||||||+|+|||||||+..++.||++||+||+||+.|++.+.+|......+..+++.|..|+.+|..
T Consensus 385 PYRDSKLTrLLQDSLGGNSKTvMIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~~~~~vn~LrelIr~Lk~EL~r 464 (1320)
T PLN03188 385 PYRDSRLTFLLQESLGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQDDVNFLREVIRQLRDELQR 464 (1320)
T ss_pred CCCcchHHHHHHHhcCCCceEEEEEecCCchhhHHHHHHHHHHHHHHhhcCccceeccchhhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999987766666677778888777766
Q ss_pred hhH
Q 002276 677 RDV 679 (943)
Q Consensus 677 ~~~ 679 (943)
+..
T Consensus 465 LK~ 467 (1320)
T PLN03188 465 VKA 467 (1320)
T ss_pred HHH
Confidence 543
No 6
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=100.00 E-value=9.7e-68 Score=594.59 Aligned_cols=287 Identities=39% Similarity=0.575 Sum_probs=255.7
Q ss_pred cCCEEEEEEeCCCCchhhccCCeeEEeeeccCCCeEEEEeCCcCceeeecceeeCCCCCcccccccch-hhHHHhhCCcc
Q 002276 362 KGNIRVFCRCRPLNSEETAAGSVMAVDFESVRDGELTVISNGAPKKTFKFDAVFGPQADQVDVFQDTA-PFANSVLDGYN 440 (943)
Q Consensus 362 KGNIRV~~RVRPl~~~E~~~g~~~~V~~~s~~d~~i~v~~~g~~~ktF~FD~VF~~~asQeeVFeev~-pLV~svLdGyN 440 (943)
-++|+|+||+||++..|...++..+..+... +.++.+..+.. .++|.||+||.|+++|++||+.++ |+|+.||.|||
T Consensus 6 ~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~-~~~v~~~~~~~-~~~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL~GYN 83 (607)
T KOG0240|consen 6 ECSIKVVCRFRPLNGLENNLGSKFIDCFENG-ENTVVLETTKE-TKTYVFDRVFSPNATQEDVYEFAAKPIVDDVLLGYN 83 (607)
T ss_pred CCceEEEEEeecCCchhhhcCCcCccCCCCC-cceEEEecccc-cccceeeeecCCCccHHHHHHHHHHHHHHHHhcccc
Confidence 4799999999999999988887776666543 44444444333 389999999999999999999977 99999999999
Q ss_pred eEEEeeCcccCccccccccCCC---CCCccHHhHHHHHHHHHhhcccceeEEEEEEEEEecchhhhccccCCCCCCCccc
Q 002276 441 VCIFAYGQTGTGKTFTMEGTKE---ARGVNFRTLEELFRIIKEREKLYRYDISVSVLEVYNEQIRDLLAVGSQPGAVSKR 517 (943)
Q Consensus 441 vcIFAYGQTGSGKTyTM~G~~e---~~GIIPRal~~LF~~i~~~~~~~~y~V~VSflEIYNE~I~DLL~~~~~~~~~~k~ 517 (943)
+||||||||||||||||.|... ..|||||++++||..|...+....|.|+|||||||+|+|+|||++. +.+
T Consensus 84 GTvfaYGqT~sGKTytm~G~~~d~~~~GIipRi~~diF~~Iys~~~n~efhVkVsy~EIYmEKi~DLL~~~------k~n 157 (607)
T KOG0240|consen 84 GTVFAYGQTGSGKTYTMEGIGHDPEEMGIIPRILNDIFDHIYSMEENLEFHVKVSYFEIYMEKIRDLLDPE------KTN 157 (607)
T ss_pred eeEEEecCCCCCcceeecccCCChhhcCcHHHHHHHHHHHHhcCcccceEEEEEEeehhhhhHHHHHhCcc------cCC
Confidence 9999999999999999999765 5699999999999999998888999999999999999999999865 357
Q ss_pred ceEEeCCCCceEcCCceEEEecChHHHHHHHHccccccccccCCCccCCCCceeeEEEEEEEEeeh---------hchh-
Q 002276 518 LEVRQAGEGMHHVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRRELVE---------WGMH- 587 (943)
Q Consensus 518 LeIred~~g~v~V~gLtev~V~S~eE~~~lL~~G~k~R~~asT~mN~~SSRSHsIftI~V~~~~~~---------~lVD- 587 (943)
+.|++|..++++|+|++++.|.+++++++++..|..+|++|.|+||.+|||||+||+|+|.+.+.. .+||
T Consensus 158 lsvheDK~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRSHsIF~i~VkQ~n~e~~~~~~gkLyLVDL 237 (607)
T KOG0240|consen 158 LSVHEDKNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRSHSIFLIHVKQENVEDKRKLSGKLYLVDL 237 (607)
T ss_pred ceeecccCCCceecCceeEEecCHHHHHHHHhcccccchhhhccccccccccceEEEEEEEeccccchhhccccEEEEEc
Confidence 999999999999999999999999999999999999999999999999999999999999887653 4555
Q ss_pred ----------------hh---------------hhhhc----CCCCCcccchHHhhhhcCCCcceeEEEecCCCCcChHh
Q 002276 588 ----------------KE---------------QAMAS----GSSRKNSKLTHLLQDSLGGDSKTLMFVQISPNENDLSE 632 (943)
Q Consensus 588 ----------------kE---------------sALa~----~sPyRdSKLTrLLQDSLGGNSKTlMIv~ISPs~~~~~E 632 (943)
.| +||+. ++|||||||||||||||||||+|.+|+|+||+..+-.|
T Consensus 238 aGSEkvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g~~shipYRDSKLTRILqdSLGGNsRTtlIi~csPss~n~~E 317 (607)
T KOG0240|consen 238 AGSEKVSKTGAEGAVLEEAKNINKSLSALGNVINALAEGPKSHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSLNEAE 317 (607)
T ss_pred ccccccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcCCCCCCcchhhHHHHHHHHHhCCCcceEEEEecCCccccccc
Confidence 01 34543 47999999999999999999999999999999999999
Q ss_pred hHHHHHHHhHhhccccccccccCC
Q 002276 633 TLCSLNFASRVRGIELGAAKKQLD 656 (943)
Q Consensus 633 TLsTLrFAsRak~Ik~~~~~~~~~ 656 (943)
|.+||+|+.||+.|++.+..|..-
T Consensus 318 T~STl~fg~rak~ikN~v~~n~e~ 341 (607)
T KOG0240|consen 318 TKSTLRFGNRAKTIKNTVWVNLEL 341 (607)
T ss_pred cccchhhccccccccchhhhhhHh
Confidence 999999999999999988776543
No 7
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=1.5e-67 Score=582.24 Aligned_cols=275 Identities=38% Similarity=0.575 Sum_probs=242.6
Q ss_pred CEEEEEEeCCCCchhhccCCeeEEeeeccCCCeEEEEeC------------CcCceeeecceeeCCCCCcccccccch-h
Q 002276 364 NIRVFCRCRPLNSEETAAGSVMAVDFESVRDGELTVISN------------GAPKKTFKFDAVFGPQADQVDVFQDTA-P 430 (943)
Q Consensus 364 NIRV~~RVRPl~~~E~~~g~~~~V~~~s~~d~~i~v~~~------------g~~~ktF~FD~VF~~~asQeeVFeev~-p 430 (943)
||+|||||||+++.|...+...++.+.+ +..+.+... ....+.|.||+||+++++|++||+++. |
T Consensus 1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vf~~~~~p 78 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQEGTRRVVKVVD--DRMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETSTQEEVYENTTKP 78 (338)
T ss_pred CeEEEEEcCCCChhhhhcCCceEEEEcC--CCEEEEcCCcccccccchhcccCCceEEEeccccCCCCCHHHHHHHHHHH
Confidence 7999999999999987777776776543 222222111 123578999999999999999999987 9
Q ss_pred hHHHhhCCcceEEEeeCcccCccccccccCCCCCCccHHhHHHHHHHHHhhcccceeEEEEEEEEEecchhhhccccCCC
Q 002276 431 FANSVLDGYNVCIFAYGQTGTGKTFTMEGTKEARGVNFRTLEELFRIIKEREKLYRYDISVSVLEVYNEQIRDLLAVGSQ 510 (943)
Q Consensus 431 LV~svLdGyNvcIFAYGQTGSGKTyTM~G~~e~~GIIPRal~~LF~~i~~~~~~~~y~V~VSflEIYNE~I~DLL~~~~~ 510 (943)
+|+++++|||+||||||||||||||||+|++.++|||||++++||+.++.....+.|.|+|||+|||||+|+|||++.
T Consensus 79 lv~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~-- 156 (338)
T cd01370 79 LVDGVLNGYNATVFAYGATGAGKTHTMLGTDSDPGLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIRDLLSPS-- 156 (338)
T ss_pred HHHHHHCCCCceEEeeCCCCCCCeEEEcCCCCCCchHHHHHHHHHHhhhhcccCceEEEEEEEEEEECCEEEECCCCC--
Confidence 999999999999999999999999999999999999999999999999987777899999999999999999999764
Q ss_pred CCCCcccceEEeCCCCceEcCCceEEEecChHHHHHHHHccccccccccCCCccCCCCceeeEEEEEEEEee--------
Q 002276 511 PGAVSKRLEVRQAGEGMHHVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRRELV-------- 582 (943)
Q Consensus 511 ~~~~~k~LeIred~~g~v~V~gLtev~V~S~eE~~~lL~~G~k~R~~asT~mN~~SSRSHsIftI~V~~~~~-------- 582 (943)
...++|++++.++++|.|++++.|.|++|++++|+.|.++|++++|.+|..|||||+||+|.|.....
T Consensus 157 ----~~~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~i~~~~~~~~~~~~~ 232 (338)
T cd01370 157 ----SGPLELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTASINQQV 232 (338)
T ss_pred ----CCCceEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCccCcceEEEEEEEEEEecCCCCCCcE
Confidence 35699999999999999999999999999999999999999999999999999999999999976532
Q ss_pred ----hhchh-----------------hh---------------hhhh------cCCCCCcccchHHhhhhcCCCcceeEE
Q 002276 583 ----EWGMH-----------------KE---------------QAMA------SGSSRKNSKLTHLLQDSLGGDSKTLMF 620 (943)
Q Consensus 583 ----~~lVD-----------------kE---------------sALa------~~sPyRdSKLTrLLQDSLGGNSKTlMI 620 (943)
.++|| +| .+|+ .++||||||||+||+|+|||||+|+||
T Consensus 233 ~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~~~~~ipyR~SkLT~lL~d~Lggn~~t~~I 312 (338)
T cd01370 233 RIGKLSLIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKKKNKHIPYRDSKLTRLLKDSLGGNCKTVMI 312 (338)
T ss_pred EEEEEEEEECCCCccccccCCCCccccccchhhHHHHHHHHHHHHHHhccCCCCcCCCcCCHHHHHHHHhcCCCCeEEEE
Confidence 24455 11 1221 468999999999999999999999999
Q ss_pred EecCCCCcChHhhHHHHHHHhHhhcc
Q 002276 621 VQISPNENDLSETLCSLNFASRVRGI 646 (943)
Q Consensus 621 v~ISPs~~~~~ETLsTLrFAsRak~I 646 (943)
+||||+..+++||++||+||+||++|
T Consensus 313 ~~vsp~~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 313 ANISPSSSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred EEeCCchhhHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999986
No 8
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=6.1e-67 Score=577.29 Aligned_cols=274 Identities=38% Similarity=0.531 Sum_probs=237.0
Q ss_pred CCEEEEEEeCCCCchhhccCCeeEEeeeccCCCeEEEEeCCcCceeeecceeeCCCCCcccccccch-hhHHHhhCCcce
Q 002276 363 GNIRVFCRCRPLNSEETAAGSVMAVDFESVRDGELTVISNGAPKKTFKFDAVFGPQADQVDVFQDTA-PFANSVLDGYNV 441 (943)
Q Consensus 363 GNIRV~~RVRPl~~~E~~~g~~~~V~~~s~~d~~i~v~~~g~~~ktF~FD~VF~~~asQeeVFeev~-pLV~svLdGyNv 441 (943)
+||||||||||+...|...+...++...+ +..+.+... +.+.|.||+||+++++|++||+++. |+|+++++|||+
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~--~~~~~~~~~--~~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G~n~ 76 (337)
T cd01373 1 PAVKVVVRIRPPNEIEADGGQGQCLKKLS--SDTLVWHSH--PPRMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGYNG 76 (337)
T ss_pred CCeEEEEEcCcCChhhcccCCCeEEEEcC--CCcEEeeCC--CCcEEeCCeEeCCCCCHHHHHHHHHHHHHHHHhCCCce
Confidence 58999999999999887655555554432 233333332 3689999999999999999999986 999999999999
Q ss_pred EEEeeCcccCccccccccCCC--------CCCccHHhHHHHHHHHHhh----cccceeEEEEEEEEEecchhhhccccCC
Q 002276 442 CIFAYGQTGTGKTFTMEGTKE--------ARGVNFRTLEELFRIIKER----EKLYRYDISVSVLEVYNEQIRDLLAVGS 509 (943)
Q Consensus 442 cIFAYGQTGSGKTyTM~G~~e--------~~GIIPRal~~LF~~i~~~----~~~~~y~V~VSflEIYNE~I~DLL~~~~ 509 (943)
||||||||||||||||+|+.. ++|||||++++||..+... .....|.|+|||+|||||+|||||++..
T Consensus 77 ti~aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~~~ 156 (337)
T cd01373 77 SIFAYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDPTS 156 (337)
T ss_pred eEEEeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCCCCC
Confidence 999999999999999999753 6899999999999988753 2346899999999999999999997543
Q ss_pred CCCCCcccceEEeCCCCceEcCCceEEEecChHHHHHHHHccccccccccCCCccCCCCceeeEEEEEEEE---------
Q 002276 510 QPGAVSKRLEVRQAGEGMHHVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRRE--------- 580 (943)
Q Consensus 510 ~~~~~~k~LeIred~~g~v~V~gLtev~V~S~eE~~~lL~~G~k~R~~asT~mN~~SSRSHsIftI~V~~~--------- 580 (943)
..+.|++++.++++|+|++++.|.|++|++++|..|..+|++++|.+|..|||||+||+|.|...
T Consensus 157 ------~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~~~ 230 (337)
T cd01373 157 ------RNLKIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSRSHAVFTCTIESWEKKASSTNI 230 (337)
T ss_pred ------CCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCcCCCCCCCccEEEEEEEEEeecCCCCCcE
Confidence 46999999999999999999999999999999999999999999999999999999999999643
Q ss_pred --eehhchh-----------------hh---------------hhhh-------cCCCCCcccchHHhhhhcCCCcceeE
Q 002276 581 --LVEWGMH-----------------KE---------------QAMA-------SGSSRKNSKLTHLLQDSLGGDSKTLM 619 (943)
Q Consensus 581 --~~~~lVD-----------------kE---------------sALa-------~~sPyRdSKLTrLLQDSLGGNSKTlM 619 (943)
...++|| +| .+|+ .++||||||||+||||+|||||+|+|
T Consensus 231 ~~s~l~~VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~~~~~ipyR~SkLT~lL~dsLggns~t~~ 310 (337)
T cd01373 231 RTSRLNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHGKQRHVPYRDSKLTFLLRDSLGGNAKTTI 310 (337)
T ss_pred EEEEEEEEECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhccCCCCccCCcccHHHHHHHHhcCCCceEEE
Confidence 2235555 11 2332 45799999999999999999999999
Q ss_pred EEecCCCCcChHhhHHHHHHHhHhhcc
Q 002276 620 FVQISPNENDLSETLCSLNFASRVRGI 646 (943)
Q Consensus 620 Iv~ISPs~~~~~ETLsTLrFAsRak~I 646 (943)
|+||||+..+++||++||+||+||+.|
T Consensus 311 I~~vsP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 311 IANVSPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred EEEECCCcccHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999987
No 9
>KOG0242 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.2e-66 Score=613.13 Aligned_cols=305 Identities=37% Similarity=0.549 Sum_probs=259.1
Q ss_pred CCEEEEEEeCCCCchhhccCCeeEEeeeccCCCeEEEEeCC-----cCceeeecceeeCCCCCcccccccc-hhhHHHhh
Q 002276 363 GNIRVFCRCRPLNSEETAAGSVMAVDFESVRDGELTVISNG-----APKKTFKFDAVFGPQADQVDVFQDT-APFANSVL 436 (943)
Q Consensus 363 GNIRV~~RVRPl~~~E~~~g~~~~V~~~s~~d~~i~v~~~g-----~~~ktF~FD~VF~~~asQeeVFeev-~pLV~svL 436 (943)
.+|.|+|||||+++.+...+....+ ....+..+...... .....|.||+||+++++|++||+.. .|+|.+|+
T Consensus 6 ~~i~V~vrvRP~~~~~~~~~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~l 83 (675)
T KOG0242|consen 6 EKILVSVRVRPLNEREDARGDRSDW--HCINDTTLFKRVTKSLPEKSKPEKYEFDRVFGEESTQEDVYERTTKPLLLSVL 83 (675)
T ss_pred ceeEEEEEeCCCCccccccCCccce--EecCCceeEeeccccccccccccceeeeeecCCCCCHHHHHHhccHHHHHHHh
Confidence 5899999999999875444433322 22233332222111 1147899999999999999999985 59999999
Q ss_pred CCcceEEEeeCcccCccccccccCCCCCCccHHhHHHHHHHHHhhcccceeEEEEEEEEEecchhhhccccCCCCCCCcc
Q 002276 437 DGYNVCIFAYGQTGTGKTFTMEGTKEARGVNFRTLEELFRIIKEREKLYRYDISVSVLEVYNEQIRDLLAVGSQPGAVSK 516 (943)
Q Consensus 437 dGyNvcIFAYGQTGSGKTyTM~G~~e~~GIIPRal~~LF~~i~~~~~~~~y~V~VSflEIYNE~I~DLL~~~~~~~~~~k 516 (943)
.|||++|||||||||||||||.|..++|||||+++.+||..|.... .+.|.|.|||+|||||.|+|||+++. .
T Consensus 84 ~G~N~TVFAYG~TgSGKTyTM~G~~~~PGii~la~~dif~~I~~~~-~r~f~v~vSYlEIYNE~I~DLL~~~~------~ 156 (675)
T KOG0242|consen 84 EGFNATVFAYGQTGSGKTYTMSGSEDDPGIIPLAMKDIFEKIDKSG-EREFSVRVSYLEIYNERIRDLLNPDG------G 156 (675)
T ss_pred cCcccceeeecCCCCCCceEEeccCCCCCeeehHHHHHHHHHHhcC-CceeEEEEEEEEEeccccccccCCCC------C
Confidence 9999999999999999999999999999999999999999999876 68999999999999999999998765 3
Q ss_pred cceEEeCCCCceEcCCceEEEecChHHHHHHHHccccccccccCCCccCCCCceeeEEEEEEEEee--------hhchh-
Q 002276 517 RLEVRQAGEGMHHVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRRELV--------EWGMH- 587 (943)
Q Consensus 517 ~LeIred~~g~v~V~gLtev~V~S~eE~~~lL~~G~k~R~~asT~mN~~SSRSHsIftI~V~~~~~--------~~lVD- 587 (943)
.|.|++|+.++++|+||+++.|.|++++..+|..|.++|+++.|.+|..|||||+||+|.|..... .++||
T Consensus 157 ~L~irED~~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHaIl~i~i~s~~~~~~~~~s~L~lIDL 236 (675)
T KOG0242|consen 157 DLRLREDSEGGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHAILRITVESRGREASSRVSKLNLIDL 236 (675)
T ss_pred CceEeEcCCCCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhheeeEEEEeccccccchhheehhhhh
Confidence 499999999999999999999999999999999999999999999999999999999999977652 46777
Q ss_pred ----------------hh---------------hhh-----hcCCCCCcccchHHhhhhcCCCcceeEEEecCCCCcChH
Q 002276 588 ----------------KE---------------QAM-----ASGSSRKNSKLTHLLQDSLGGDSKTLMFVQISPNENDLS 631 (943)
Q Consensus 588 ----------------kE---------------sAL-----a~~sPyRdSKLTrLLQDSLGGNSKTlMIv~ISPs~~~~~ 631 (943)
+| .+| ..++||||||||||||+||||||+|.|||||+|+..+|+
T Consensus 237 AGSERas~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~~~hipYRDSKLTRiLq~sLgGn~rt~~I~tisp~~~~~~ 316 (675)
T KOG0242|consen 237 AGSERASRTGNEGVRLKEGAHINRSLLALGTVINKLSEGKRPRHIPYRDSKLTRLLQDSLGGNARTAIIATISPSSSHYE 316 (675)
T ss_pred hhhhhhhhhhccceeccccchhhHHHHHHHHHHHHHccccccCCCCccccHHHHhchhhcCCCccEEEEEEeCchhhHHH
Confidence 11 122 225899999999999999999999999999999999999
Q ss_pred hhHHHHHHHhHhhccccccccccCChH--HHHHHHHHHHHHHHHHhh
Q 002276 632 ETLCSLNFASRVRGIELGAAKKQLDTS--ELLRYKQMVEKTKQELKS 676 (943)
Q Consensus 632 ETLsTLrFAsRak~Ik~~~~~~~~~~~--el~rlk~~ie~LK~eL~~ 676 (943)
||.+||.||+||+.|++.+.+|..... -+..++.++..|+.++..
T Consensus 317 eT~nTL~fAsrak~i~~~~~~n~~~~~~~~~~~~~~~i~~l~~e~~~ 363 (675)
T KOG0242|consen 317 ETKNTLKFASRAKEITTKAQVNVILSDKALLKYLQREIAELEAELER 363 (675)
T ss_pred HHHHHHHHHHHhhhcccccccceecchhhhhHHHHHHHHHHHHHHHh
Confidence 999999999999999999988865432 233345778888777765
No 10
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=4.1e-66 Score=593.96 Aligned_cols=325 Identities=32% Similarity=0.514 Sum_probs=276.8
Q ss_pred CCEEEEEEeCCCCchhhccCCeeEEeeeccCCCeEEEE------eCCcCceeeecceeeCCC-------CCcccccccch
Q 002276 363 GNIRVFCRCRPLNSEETAAGSVMAVDFESVRDGELTVI------SNGAPKKTFKFDAVFGPQ-------ADQVDVFQDTA 429 (943)
Q Consensus 363 GNIRV~~RVRPl~~~E~~~g~~~~V~~~s~~d~~i~v~------~~g~~~ktF~FD~VF~~~-------asQeeVFeev~ 429 (943)
.+|||.|||||++.+|......+++.++... ..+... ....++++|.||++|.+. +.|++||+.++
T Consensus 4 ~kVkVaVRVRP~nrREl~l~tk~vv~vd~~q-~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~lG 82 (1714)
T KOG0241|consen 4 AKVKVAVRVRPMNRRELELSTKCVVEVDKNQ-TVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKCLG 82 (1714)
T ss_pred cceEEEEEecccchhhhcccccceEEeccCc-eeecCCCccccccccCCCceeecccccccCCccccccccchhHHHhcc
Confidence 5899999999999999988888888775432 111111 112357899999999763 68999999998
Q ss_pred h-hHHHhhCCcceEEEeeCcccCccccccccCCCCCCccHHhHHHHHHHHHh-hcccceeEEEEEEEEEecchhhhcccc
Q 002276 430 P-FANSVLDGYNVCIFAYGQTGTGKTFTMEGTKEARGVNFRTLEELFRIIKE-REKLYRYDISVSVLEVYNEQIRDLLAV 507 (943)
Q Consensus 430 p-LV~svLdGyNvcIFAYGQTGSGKTyTM~G~~e~~GIIPRal~~LF~~i~~-~~~~~~y~V~VSflEIYNE~I~DLL~~ 507 (943)
+ +|+++|+|||+||||||||||||||||+|..+++|||||.++.||..|.. ......|.|.|||+|||||++||||.|
T Consensus 83 ~~il~naf~GyNaCifaYGQtGsGKsYsmmGt~~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~DLLdP 162 (1714)
T KOG0241|consen 83 EGILENAFQGYNACIFAYGQTGSGKSYSMMGTAEQPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVRDLLDP 162 (1714)
T ss_pred hHHHHHHhhccceeeEEecccCCCceeEeeccCCCCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchhhhhCC
Confidence 5 88999999999999999999999999999999999999999999999987 445678999999999999999999987
Q ss_pred CCCCCCCcccceEEeCCCCceEcCCceEEEecChHHHHHHHHccccccccccCCCccCCCCceeeEEEEEEEEeeh----
Q 002276 508 GSQPGAVSKRLEVRQAGEGMHHVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRRELVE---- 583 (943)
Q Consensus 508 ~~~~~~~~k~LeIred~~g~v~V~gLtev~V~S~eE~~~lL~~G~k~R~~asT~mN~~SSRSHsIftI~V~~~~~~---- 583 (943)
.. .++.|+|+++.--+.||.||++..|+|++|+..+|..|+++|++++|+||..|||||++|.+.|.+...+
T Consensus 163 k~----ssqtlkVrehsvlGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFslvvtQ~l~D~ktg 238 (1714)
T KOG0241|consen 163 KG----SSQTLKVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSLVVTQTLYDLKTG 238 (1714)
T ss_pred CC----CcceeEEeecccccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccceeEEEEEeeEEeccccC
Confidence 54 3578999999999999999999999999999999999999999999999999999999999998775432
Q ss_pred ---------hchh-----------------hh---------------hhhhc---------CCCCCcccchHHhhhhcCC
Q 002276 584 ---------WGMH-----------------KE---------------QAMAS---------GSSRKNSKLTHLLQDSLGG 613 (943)
Q Consensus 584 ---------~lVD-----------------kE---------------sALa~---------~sPyRdSKLTrLLQDSLGG 613 (943)
.+|| +| +||++ .+|||||.|||||||+|||
T Consensus 239 ~SgeKvsklslVDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDSVLTwLLkD~LGG 318 (1714)
T KOG0241|consen 239 HSGEKVSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDSVLTWLLKDNLGG 318 (1714)
T ss_pred cchhheeeeeEEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhhcCCCccccccchhHHHHHHHHhhcCC
Confidence 3344 11 34432 2599999999999999999
Q ss_pred CcceeEEEecCCCCcChHhhHHHHHHHhHhhccccccccccCChHHHHH-HHHHHHHHHHHHhhhh-HHHHHHHHHHHHH
Q 002276 614 DSKTLMFVQISPNENDLSETLCSLNFASRVRGIELGAAKKQLDTSELLR-YKQMVEKTKQELKSRD-VQSKRMEDTIHGL 691 (943)
Q Consensus 614 NSKTlMIv~ISPs~~~~~ETLsTLrFAsRak~Ik~~~~~~~~~~~el~r-lk~~ie~LK~eL~~~~-~q~~~lE~~i~~l 691 (943)
||+|+||+||||++.+|+||++|||||.|||.|+|.+..|..+...+++ +++++++|+.+|...+ .+...+++.+...
T Consensus 319 NsrTvMiatvSPaAdnyeeTlStLRYadrAkrIvN~avvNedpnarvirElReEve~lr~qL~~ae~~~~~el~e~l~es 398 (1714)
T KOG0241|consen 319 NSRTVMIATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNARVIRELREEVEKLREQLEQAEAMKLPELKEKLEES 398 (1714)
T ss_pred CceeEEEEEecccccchHHHHHHHHHHHHHHHhhccccccCCchHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998877665 8999999998887643 2344444444433
Q ss_pred H
Q 002276 692 D 692 (943)
Q Consensus 692 ~ 692 (943)
+
T Consensus 399 e 399 (1714)
T KOG0241|consen 399 E 399 (1714)
T ss_pred H
Confidence 3
No 11
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=3.5e-65 Score=565.10 Aligned_cols=274 Identities=31% Similarity=0.519 Sum_probs=237.1
Q ss_pred CCEEEEEEeCCCCchhhccCCeeEEeeeccCCCeEEEEeC------------CcCceeeecceeeCCCCCcccccccch-
Q 002276 363 GNIRVFCRCRPLNSEETAAGSVMAVDFESVRDGELTVISN------------GAPKKTFKFDAVFGPQADQVDVFQDTA- 429 (943)
Q Consensus 363 GNIRV~~RVRPl~~~E~~~g~~~~V~~~s~~d~~i~v~~~------------g~~~ktF~FD~VF~~~asQeeVFeev~- 429 (943)
.+|+|||||||+.+.|...+...++.+. ++..+.+... ....+.|.||+||+++++|++||+.+.
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~v~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~tq~~vy~~~~~ 78 (345)
T cd01368 1 DPVKVYLRVRPLSKDELESEDEGCIEVI--NSTTIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTTQKEFFEGTAL 78 (345)
T ss_pred CCEEEEEEeCcCCchhhccCCCceEEEc--CCCEEEEeCCccccccccccccCCCceEeecCeEECCCCCHHHHHHHHHH
Confidence 3799999999999988766555555543 2344444322 224678999999999999999999976
Q ss_pred hhHHHhhCCcceEEEeeCcccCccccccccCCCCCCccHHhHHHHHHHHHhhcccceeEEEEEEEEEecchhhhccccCC
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTFTMEGTKEARGVNFRTLEELFRIIKEREKLYRYDISVSVLEVYNEQIRDLLAVGS 509 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTyTM~G~~e~~GIIPRal~~LF~~i~~~~~~~~y~V~VSflEIYNE~I~DLL~~~~ 509 (943)
|+|+++++|||+||||||||||||||||+|++.++|||||++++||+.+.. |.|+|||+|||||+|+|||++..
T Consensus 79 p~v~~~l~G~n~ti~aYGqtGSGKTyTm~G~~~~~Gli~r~~~~lF~~~~~------~~v~~S~~EIyne~v~DLL~~~~ 152 (345)
T cd01368 79 PLVQDLLKGKNSLLFTYGVTNSGKTYTMQGSPGDGGILPRSLDVIFNSIGG------YSVFVSYVEIYNNYIYDLLEDSP 152 (345)
T ss_pred HHHHHHhCCCceEEEEeCCCCCCCeEEecCCCCCCchHHHHHHHHHHHHHh------eeEEEEEEEEeCCEeEeCCCCcc
Confidence 999999999999999999999999999999999999999999999999875 89999999999999999998765
Q ss_pred CCCCCcccceEEeCCCCceEcCCceEEEecChHHHHHHHHccccccccccCCCccCCCCceeeEEEEEEEEee-------
Q 002276 510 QPGAVSKRLEVRQAGEGMHHVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRRELV------- 582 (943)
Q Consensus 510 ~~~~~~k~LeIred~~g~v~V~gLtev~V~S~eE~~~lL~~G~k~R~~asT~mN~~SSRSHsIftI~V~~~~~------- 582 (943)
......+.+.|++++.|+++|+|++++.|.|++|++.+|..|.++|.+++|.+|.+|||||+||+|.+.....
T Consensus 153 ~~~~~~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N~~SSRSH~i~~i~v~~~~~~~~~~~~ 232 (345)
T cd01368 153 SSTKKRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGDSDGDVD 232 (345)
T ss_pred ccccCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCcCCCCCceEEEEEEEEEeccCcccccc
Confidence 4323346799999999999999999999999999999999999999999999999999999999999865321
Q ss_pred ----------hhchh-----------------hh---------------hhh---------hcCCCCCcccchHHhhhhc
Q 002276 583 ----------EWGMH-----------------KE---------------QAM---------ASGSSRKNSKLTHLLQDSL 611 (943)
Q Consensus 583 ----------~~lVD-----------------kE---------------sAL---------a~~sPyRdSKLTrLLQDSL 611 (943)
.++|| +| .+| ..++||||||||+||||+|
T Consensus 233 ~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~~~~~~~~~~~iPyR~SkLT~lL~~~l 312 (345)
T cd01368 233 QDKDQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRENQLSGSTNKMVPYRDSKLTHLFQNYF 312 (345)
T ss_pred cCCCceEEEEEEEEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhcccCCCCcCCCcCCHHHHHHHHhc
Confidence 24455 11 122 2457999999999999999
Q ss_pred CCCcceeEEEecCCCCcChHhhHHHHHHHhHhh
Q 002276 612 GGDSKTLMFVQISPNENDLSETLCSLNFASRVR 644 (943)
Q Consensus 612 GGNSKTlMIv~ISPs~~~~~ETLsTLrFAsRak 644 (943)
||||+|+||+||||+..+++||++||+||.+|+
T Consensus 313 ~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 313 DGEGKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred CCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999985
No 12
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=6.7e-65 Score=564.44 Aligned_cols=285 Identities=36% Similarity=0.553 Sum_probs=250.7
Q ss_pred CCEEEEEEeCCCCchhhccCCeeEEeeeccCCCeEEEEeCC------cCceeeecceeeCCC-------CCcccccccch
Q 002276 363 GNIRVFCRCRPLNSEETAAGSVMAVDFESVRDGELTVISNG------APKKTFKFDAVFGPQ-------ADQVDVFQDTA 429 (943)
Q Consensus 363 GNIRV~~RVRPl~~~E~~~g~~~~V~~~s~~d~~i~v~~~g------~~~ktF~FD~VF~~~-------asQeeVFeev~ 429 (943)
+||+|||||||++..|...+...++.+.. ..+++.... ...+.|.||+||+++ ++|++||++++
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~---~~v~v~~~~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~ 77 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRGSKCIVQMPG---KVTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLG 77 (356)
T ss_pred CCEEEEEEeCcCChhhhccCCceEEEECC---CEEEEEcCCcccccccCceEEECCeEecccCCCCCCCCCHHHHHHHHH
Confidence 68999999999999998888877777653 455555442 346789999999998 99999999986
Q ss_pred -hhHHHhhCCcceEEEeeCcccCccccccccCCCCCCccHHhHHHHHHHHHhhcc-cceeEEEEEEEEEecchhhhcccc
Q 002276 430 -PFANSVLDGYNVCIFAYGQTGTGKTFTMEGTKEARGVNFRTLEELFRIIKEREK-LYRYDISVSVLEVYNEQIRDLLAV 507 (943)
Q Consensus 430 -pLV~svLdGyNvcIFAYGQTGSGKTyTM~G~~e~~GIIPRal~~LF~~i~~~~~-~~~y~V~VSflEIYNE~I~DLL~~ 507 (943)
|+|+++++|||+||||||||||||||||+|+..++|||||++++||+.+..... ...|.|+|||+|||||+|+|||++
T Consensus 78 ~p~v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~ 157 (356)
T cd01365 78 RELLDHAFEGYNVCLFAYGQTGSGKSYTMMGYKEEKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLNP 157 (356)
T ss_pred HHHHHHHhCCCceEEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeCCCC
Confidence 999999999999999999999999999999999999999999999999987544 578999999999999999999986
Q ss_pred CCCCCCCcccceEEeCCCCceEcCCceEEEecChHHHHHHHHccccccccccCCCccCCCCceeeEEEEEEEEee-----
Q 002276 508 GSQPGAVSKRLEVRQAGEGMHHVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRRELV----- 582 (943)
Q Consensus 508 ~~~~~~~~k~LeIred~~g~v~V~gLtev~V~S~eE~~~lL~~G~k~R~~asT~mN~~SSRSHsIftI~V~~~~~----- 582 (943)
.. .....+.|++++.++++|+|++++.|.|++|++.+|..|.++|.+++|.+|..|||||+||+|.|.+...
T Consensus 158 ~~---~~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~l~v~~~~~~~~~~ 234 (356)
T cd01365 158 KK---KNKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSHAVFTIVLTQKKLDKETD 234 (356)
T ss_pred Cc---cCCcCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhcccccCCCCCCCcCCceEEEEEEEEEEecccCCC
Confidence 54 1245799999999999999999999999999999999999999999999999999999999999875421
Q ss_pred --------hhchh-----------------hh---------------hhh-----------hcCCCCCcccchHHhhhhc
Q 002276 583 --------EWGMH-----------------KE---------------QAM-----------ASGSSRKNSKLTHLLQDSL 611 (943)
Q Consensus 583 --------~~lVD-----------------kE---------------sAL-----------a~~sPyRdSKLTrLLQDSL 611 (943)
..+|| +| .++ ..++||||||||+||+|+|
T Consensus 235 ~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~l~~~~~~~~~~~~~~ipyR~SkLT~lL~~~l 314 (356)
T cd01365 235 LTTEKVSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISALADNSSAKSKKKSSFIPYRDSVLTWLLKENL 314 (356)
T ss_pred CCceEEEEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHHHHHHHhcccccccCCCCcCCCcCcHHHHHHHHhc
Confidence 23444 11 122 2457999999999999999
Q ss_pred CCCcceeEEEecCCCCcChHhhHHHHHHHhHhhccccccccc
Q 002276 612 GGDSKTLMFVQISPNENDLSETLCSLNFASRVRGIELGAAKK 653 (943)
Q Consensus 612 GGNSKTlMIv~ISPs~~~~~ETLsTLrFAsRak~Ik~~~~~~ 653 (943)
||||+|+||+||||+..+++||++||+||+|+++|++.|..+
T Consensus 315 gg~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~~~ 356 (356)
T cd01365 315 GGNSKTAMIATISPADINYEETLSTLRYADRAKKIVNVAVVN 356 (356)
T ss_pred CCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccC
Confidence 999999999999999999999999999999999999988653
No 13
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=1.3e-64 Score=555.38 Aligned_cols=271 Identities=36% Similarity=0.564 Sum_probs=237.9
Q ss_pred CCEEEEEEeCCCCchhhccCCeeEEeeeccCCCeEEEEeCC--------cCceeeecceeeCCCCCcccccccch-hhHH
Q 002276 363 GNIRVFCRCRPLNSEETAAGSVMAVDFESVRDGELTVISNG--------APKKTFKFDAVFGPQADQVDVFQDTA-PFAN 433 (943)
Q Consensus 363 GNIRV~~RVRPl~~~E~~~g~~~~V~~~s~~d~~i~v~~~g--------~~~ktF~FD~VF~~~asQeeVFeev~-pLV~ 433 (943)
+||+|||||||+.+.|...+...++.++.. ..+++.... ...+.|+||+||+++++|++||+.++ |+|+
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vf~~~~~plv~ 78 (322)
T cd01367 1 MKITVAVRKRPLNDKELSKGETDVVSCESN--PTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVTNEEVYRSTVKPLIP 78 (322)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEECCC--CEEEEecCccccccccccCCceEecceEECCCCCHHHHHHHHHHHHHH
Confidence 589999999999999887666666655432 344443211 12578999999999999999999976 9999
Q ss_pred HhhCCcceEEEeeCcccCccccccccCCCCCCccHHhHHHHHHHHHhhcccceeEEEEEEEEEecchhhhccccCCCCCC
Q 002276 434 SVLDGYNVCIFAYGQTGTGKTFTMEGTKEARGVNFRTLEELFRIIKEREKLYRYDISVSVLEVYNEQIRDLLAVGSQPGA 513 (943)
Q Consensus 434 svLdGyNvcIFAYGQTGSGKTyTM~G~~e~~GIIPRal~~LF~~i~~~~~~~~y~V~VSflEIYNE~I~DLL~~~~~~~~ 513 (943)
++++|||+||||||||||||||||+|+..++|||||++++||+.++... +.|.|++||+|||||+|+|||++
T Consensus 79 ~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Glipr~~~~lf~~~~~~~--~~~~v~~S~~EIy~e~v~DLL~~------ 150 (322)
T cd01367 79 HVFEGGVATCFAYGQTGSGKTYTMLGDENQEGLYALAARDIFRLLAQPN--DDLGVTVSFFEIYGGKLFDLLND------ 150 (322)
T ss_pred HHhCCCceEEEeccCCCCCCceEecCcCCcCccHHHHHHHHHHHHhccc--cccEEEEEEEeeecCchhhhccC------
Confidence 9999999999999999999999999999999999999999999998765 68999999999999999999975
Q ss_pred CcccceEEeCCCCceEcCCceEEEecChHHHHHHHHccccccccccCCCccCCCCceeeEEEEEEEEe------ehhchh
Q 002276 514 VSKRLEVRQAGEGMHHVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRREL------VEWGMH 587 (943)
Q Consensus 514 ~~k~LeIred~~g~v~V~gLtev~V~S~eE~~~lL~~G~k~R~~asT~mN~~SSRSHsIftI~V~~~~------~~~lVD 587 (943)
.+.+.|++++.++++|+|++++.|.|++|++++|..|.++|.+++|.+|..|||||+||+|.|.... ..++||
T Consensus 151 -~~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~s~l~~vD 229 (322)
T cd01367 151 -RKRLSVLEDGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQIILKNKKLNKLLGKLSFID 229 (322)
T ss_pred -ccceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCcccceEEEEEEEEEecCCeeEEEEEEee
Confidence 2469999999999999999999999999999999999999999999999999999999999998654 234444
Q ss_pred ------------------hh---------------hhhh---cCCCCCcccchHHhhhhcCCCcceeEEEecCCCCcChH
Q 002276 588 ------------------KE---------------QAMA---SGSSRKNSKLTHLLQDSLGGDSKTLMFVQISPNENDLS 631 (943)
Q Consensus 588 ------------------kE---------------sALa---~~sPyRdSKLTrLLQDSLGGNSKTlMIv~ISPs~~~~~ 631 (943)
+| .+++ .++||||||||+||||+|||||+|+||+||||+..+++
T Consensus 230 LAGsE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~~~iPyRdSkLT~lL~~~L~g~~~t~~I~~vsp~~~~~~ 309 (322)
T cd01367 230 LAGSERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNKAHVPFRGSKLTQVLRDSFIGNSKTVMIATISPSASSCE 309 (322)
T ss_pred cCCccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhhCCCCeEEEEEEeCCchhhHH
Confidence 11 1222 35799999999999999999999999999999999999
Q ss_pred hhHHHHHHHhHhh
Q 002276 632 ETLCSLNFASRVR 644 (943)
Q Consensus 632 ETLsTLrFAsRak 644 (943)
||++||+||+|+|
T Consensus 310 eTl~tL~fa~r~k 322 (322)
T cd01367 310 HTLNTLRYADRVK 322 (322)
T ss_pred HHHHHHHHHHhhC
Confidence 9999999999986
No 14
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=3.9e-63 Score=549.14 Aligned_cols=286 Identities=40% Similarity=0.615 Sum_probs=247.9
Q ss_pred CCEEEEEEeCCCCchhhccCCeeEEeeeccCCCeEEEEeCC---cCceeeecceeeCCCCCcccccccch-hhHHHhhCC
Q 002276 363 GNIRVFCRCRPLNSEETAAGSVMAVDFESVRDGELTVISNG---APKKTFKFDAVFGPQADQVDVFQDTA-PFANSVLDG 438 (943)
Q Consensus 363 GNIRV~~RVRPl~~~E~~~g~~~~V~~~s~~d~~i~v~~~g---~~~ktF~FD~VF~~~asQeeVFeev~-pLV~svLdG 438 (943)
+||+|+|||||+...|...+...++.+... ...+.+.... ...+.|.||+||+++++|++||+++. |+|+++++|
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~-~~~i~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~~~G 80 (352)
T cd01364 2 SNIQVVVRCRPRNSRERKEKSSVVVEVSGS-SKEIIVSTGGADKQSTKTYTFDKVFGPEADQIEVYSQVVSPILDEVLMG 80 (352)
T ss_pred CCEEEEEEcCcCCccccccCCCeEEEEcCC-CcEEEEcCCCcccccceeEeccccCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 699999999999998877666666665432 3455554432 25689999999999999999999865 999999999
Q ss_pred cceEEEeeCcccCccccccccCC-----------CCCCccHHhHHHHHHHHHhhcccceeEEEEEEEEEecchhhhcccc
Q 002276 439 YNVCIFAYGQTGTGKTFTMEGTK-----------EARGVNFRTLEELFRIIKEREKLYRYDISVSVLEVYNEQIRDLLAV 507 (943)
Q Consensus 439 yNvcIFAYGQTGSGKTyTM~G~~-----------e~~GIIPRal~~LF~~i~~~~~~~~y~V~VSflEIYNE~I~DLL~~ 507 (943)
||+||||||||||||||||+|+. +.+|||||++++||+.+... ...|.|+|||+|||||.|+|||++
T Consensus 81 ~n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~--~~~~~v~~S~~EIy~e~v~DLL~~ 158 (352)
T cd01364 81 YNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQ--NTEYSVKVSYLELYNEELFDLLSS 158 (352)
T ss_pred CeEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhc--cceeEEEEEEEEeeCCeeeeCCCC
Confidence 99999999999999999999974 34899999999999999876 468999999999999999999986
Q ss_pred CCCCCCCcccceEEeC--CCCceEcCCceEEEecChHHHHHHHHccccccccccCCCccCCCCceeeEEEEEEEEe----
Q 002276 508 GSQPGAVSKRLEVRQA--GEGMHHVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRREL---- 581 (943)
Q Consensus 508 ~~~~~~~~k~LeIred--~~g~v~V~gLtev~V~S~eE~~~lL~~G~k~R~~asT~mN~~SSRSHsIftI~V~~~~---- 581 (943)
.. ...+++.|+++ ..++++|+|++++.|.|++|++.+|..|.++|.+++|.+|..|||||+||+|.|....
T Consensus 159 ~~---~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRSH~i~~i~i~~~~~~~~ 235 (352)
T cd01364 159 ES---DLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQSSRSHSIFSITIHIKETTIS 235 (352)
T ss_pred cc---ccCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccccCcCCCCCCCCceEEEEEEEEeccCCC
Confidence 54 13467999999 5889999999999999999999999999999999999999999999999999986532
Q ss_pred --------ehhchh-----------------hh---------------hhhh---cCCCCCcccchHHhhhhcCCCccee
Q 002276 582 --------VEWGMH-----------------KE---------------QAMA---SGSSRKNSKLTHLLQDSLGGDSKTL 618 (943)
Q Consensus 582 --------~~~lVD-----------------kE---------------sALa---~~sPyRdSKLTrLLQDSLGGNSKTl 618 (943)
...+|| +| .+++ .++|||+||||+||+|+|||||+|+
T Consensus 236 ~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~~~~~vpyR~S~LT~lL~~~Lgg~s~t~ 315 (352)
T cd01364 236 GEELVKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVEKSPHIPYRESKLTRLLQDSLGGRTKTS 315 (352)
T ss_pred CCccEEEEEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHhcCCCceEE
Confidence 224455 11 1222 3579999999999999999999999
Q ss_pred EEEecCCCCcChHhhHHHHHHHhHhhcccccccccc
Q 002276 619 MFVQISPNENDLSETLCSLNFASRVRGIELGAAKKQ 654 (943)
Q Consensus 619 MIv~ISPs~~~~~ETLsTLrFAsRak~Ik~~~~~~~ 654 (943)
||+||||+..+++||++||+||+||++|++.|..|+
T Consensus 316 ~I~~vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~n~ 351 (352)
T cd01364 316 IIATISPASINLEETLSTLEYAHRAKNIKNKPEVNQ 351 (352)
T ss_pred EEEEeCCCcccHHHHHHHHHHHHHHhhccCccccCC
Confidence 999999999999999999999999999999998775
No 15
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=7.8e-63 Score=541.55 Aligned_cols=284 Identities=52% Similarity=0.779 Sum_probs=248.2
Q ss_pred cCCEEEEEEeCCCCchhhccCCeeEEeeeccCCCeEEEEeCCcCceeeecceeeCCCCCcccccccchhhHHHhhCCcce
Q 002276 362 KGNIRVFCRCRPLNSEETAAGSVMAVDFESVRDGELTVISNGAPKKTFKFDAVFGPQADQVDVFQDTAPFANSVLDGYNV 441 (943)
Q Consensus 362 KGNIRV~~RVRPl~~~E~~~g~~~~V~~~s~~d~~i~v~~~g~~~ktF~FD~VF~~~asQeeVFeev~pLV~svLdGyNv 441 (943)
+|+|+|+|||||+...|.. ....++.+.+..+..+.+.......+.|.||+||+++++|++||+.+.|+|+++++|||+
T Consensus 1 ~~~i~V~vRirP~~~~e~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~f~fD~vf~~~~~q~~v~~~v~p~v~~~~~G~~~ 79 (329)
T cd01366 1 KGNIRVFCRVRPLLPSEST-EYSSVISFPDEDGGTIELSKGTGKKKSFSFDRVFDPDASQEDVFEEVSPLVQSALDGYNV 79 (329)
T ss_pred CCCEEEEEEcCcCCccccC-CCccEEEEcCCCceEEEEeCCCCCceEEecCEEECCCCCHHHHHHHHHHHHHHHhCCCce
Confidence 6999999999999987752 333445555444455655544356789999999999999999999988999999999999
Q ss_pred EEEeeCcccCccccccccCCCCCCccHHhHHHHHHHHHhhcc-cceeEEEEEEEEEecchhhhccccCCCCCCCcccceE
Q 002276 442 CIFAYGQTGTGKTFTMEGTKEARGVNFRTLEELFRIIKEREK-LYRYDISVSVLEVYNEQIRDLLAVGSQPGAVSKRLEV 520 (943)
Q Consensus 442 cIFAYGQTGSGKTyTM~G~~e~~GIIPRal~~LF~~i~~~~~-~~~y~V~VSflEIYNE~I~DLL~~~~~~~~~~k~LeI 520 (943)
||||||+|||||||||+|+..++|||||++++||..++.... .+.|.|++||+|||||+|+|||++.. .....++|
T Consensus 80 ~i~ayG~tgSGKT~tl~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~---~~~~~l~i 156 (329)
T cd01366 80 CIFAYGQTGSGKTYTMEGPPENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKP---APKKKLEI 156 (329)
T ss_pred EEEEeCCCCCCCcEEecCCCCCCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCc---CCCCceEE
Confidence 999999999999999999999999999999999999988654 68999999999999999999998653 12467999
Q ss_pred EeCCCCceEcCCceEEEecChHHHHHHHHccccccccccCCCccCCCCceeeEEEEEEEEee---------hhchh----
Q 002276 521 RQAGEGMHHVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRRELV---------EWGMH---- 587 (943)
Q Consensus 521 red~~g~v~V~gLtev~V~S~eE~~~lL~~G~k~R~~asT~mN~~SSRSHsIftI~V~~~~~---------~~lVD---- 587 (943)
++++.++++|.|++++.|.|++|+..+|..|.++|.+++|.+|..|||||+||+|.|...+. ..+||
T Consensus 157 ~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~s~l~~VDLaGs 236 (329)
T cd01366 157 KHDSKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSHAVFQLKIRGTNLQTGEQTRGKLNLVDLAGS 236 (329)
T ss_pred EECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhcccccccccCCCCCccEEEEEEEEEEcCCCCcEEEEEEEEEECCCC
Confidence 99999999999999999999999999999999999999999999999999999999976432 24444
Q ss_pred -------------hh---------------hhh---hcCCCCCcccchHHhhhhcCCCcceeEEEecCCCCcChHhhHHH
Q 002276 588 -------------KE---------------QAM---ASGSSRKNSKLTHLLQDSLGGDSKTLMFVQISPNENDLSETLCS 636 (943)
Q Consensus 588 -------------kE---------------sAL---a~~sPyRdSKLTrLLQDSLGGNSKTlMIv~ISPs~~~~~ETLsT 636 (943)
+| .++ ..++|||+||||+||+|+|||+++|+||+||||...+++||++|
T Consensus 237 E~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~~~~ipyr~S~LT~lL~~~l~g~~~t~~i~~vsp~~~~~~etl~t 316 (329)
T cd01366 237 ERLKKSGATGDRLKEAQAINKSLSALGDVISALRSKDSHVPYRNSKLTYLLQDSLGGNSKTLMFVNISPLESNLSETLCS 316 (329)
T ss_pred cccccccccchhhHhHhhhhhHHHHHHHHHHHHhcCCCcCCCcccHhHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHH
Confidence 11 122 23579999999999999999999999999999999999999999
Q ss_pred HHHHhHhhccccc
Q 002276 637 LNFASRVRGIELG 649 (943)
Q Consensus 637 LrFAsRak~Ik~~ 649 (943)
|+||+|+++|++|
T Consensus 317 L~~a~~~~~i~~~ 329 (329)
T cd01366 317 LRFASRVRSVELG 329 (329)
T ss_pred HHHHHHhhcccCC
Confidence 9999999999875
No 16
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=6.8e-63 Score=543.96 Aligned_cols=277 Identities=42% Similarity=0.665 Sum_probs=243.0
Q ss_pred CCEEEEEEeCCCCchhhccCCeeEEeeeccCCCeEEEEeCC----cCceeeecceeeCCCCCcccccccch-hhHHHhhC
Q 002276 363 GNIRVFCRCRPLNSEETAAGSVMAVDFESVRDGELTVISNG----APKKTFKFDAVFGPQADQVDVFQDTA-PFANSVLD 437 (943)
Q Consensus 363 GNIRV~~RVRPl~~~E~~~g~~~~V~~~s~~d~~i~v~~~g----~~~ktF~FD~VF~~~asQeeVFeev~-pLV~svLd 437 (943)
.||+|+|||||+++.|...+...++..+. ....+.+.... ...+.|.||+||+++++|++||+++. |+|+++++
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~plv~~~~~ 79 (333)
T cd01371 1 ENVKVVVRCRPLNKREKSEGAPEIVGVDE-NRGQVTVHNPKADAKEPPKVFTFDAVYDPNSTQEDVYNETARPLVDSVLE 79 (333)
T ss_pred CCeEEEEEcCcCChhhhhcCCCeEEEEcC-CCCEEEEeCCcccccCCCceeeeccccCCCccHHHHHHHHHHHHHHHHhC
Confidence 48999999999999888777666666543 24555554432 35688999999999999999999975 99999999
Q ss_pred CcceEEEeeCcccCccccccccCCC---CCCccHHhHHHHHHHHHhhcccceeEEEEEEEEEecchhhhccccCCCCCCC
Q 002276 438 GYNVCIFAYGQTGTGKTFTMEGTKE---ARGVNFRTLEELFRIIKEREKLYRYDISVSVLEVYNEQIRDLLAVGSQPGAV 514 (943)
Q Consensus 438 GyNvcIFAYGQTGSGKTyTM~G~~e---~~GIIPRal~~LF~~i~~~~~~~~y~V~VSflEIYNE~I~DLL~~~~~~~~~ 514 (943)
|||+||||||||||||||||+|+.. .+|||||++++||..+..... ..|.|.|||+|||||.|+|||.+..
T Consensus 80 G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~Lf~~~~~~~~-~~~~v~~S~~Eiy~e~v~DLL~~~~----- 153 (333)
T cd01371 80 GYNGTIFAYGQTGTGKTFTMEGVREPPELRGIIPNSFAHIFGHIAKAEN-VQFLVRVSYLEIYNEEVRDLLGKDQ----- 153 (333)
T ss_pred CCceeEEecCCCCCCCcEeecCCCCcccccchHHHHHHHHHHHHhhccC-ccEEEEEEEEEeeCCeeeeCCCCCC-----
Confidence 9999999999999999999999887 999999999999999887554 6899999999999999999997643
Q ss_pred cccceEEeCCCCceEcCCceEEEecChHHHHHHHHccccccccccCCCccCCCCceeeEEEEEEEEee------------
Q 002276 515 SKRLEVRQAGEGMHHVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRRELV------------ 582 (943)
Q Consensus 515 ~k~LeIred~~g~v~V~gLtev~V~S~eE~~~lL~~G~k~R~~asT~mN~~SSRSHsIftI~V~~~~~------------ 582 (943)
...+.|++++.++++|.|++++.|.|++++..+|..|.++|.+++|.+|..|||||+||+|.|.....
T Consensus 154 ~~~l~i~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~ 233 (333)
T cd01371 154 KKKLELKERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFTITIECSEKGEDGENHIRVGK 233 (333)
T ss_pred CCceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCCCCCcEEEEEEEEEEeccCCCCCcEEEEE
Confidence 35799999999999999999999999999999999999999999999999999999999999976532
Q ss_pred hhchh-----------------hh---------------hhhh----cCCCCCcccchHHhhhhcCCCcceeEEEecCCC
Q 002276 583 EWGMH-----------------KE---------------QAMA----SGSSRKNSKLTHLLQDSLGGDSKTLMFVQISPN 626 (943)
Q Consensus 583 ~~lVD-----------------kE---------------sALa----~~sPyRdSKLTrLLQDSLGGNSKTlMIv~ISPs 626 (943)
..+|| +| .+++ .++||||||||+||+|+|||||+|+||+||||.
T Consensus 234 L~~VDLAGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~~~~~ipyR~SkLT~lL~~~l~g~s~t~~I~~vsP~ 313 (333)
T cd01371 234 LNLVDLAGSERQSKTGATGDRLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNSKTVMCANIGPA 313 (333)
T ss_pred EEEEECCCCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCceEEEEEEeCCc
Confidence 23455 11 1222 257999999999999999999999999999999
Q ss_pred CcChHhhHHHHHHHhHhhcc
Q 002276 627 ENDLSETLCSLNFASRVRGI 646 (943)
Q Consensus 627 ~~~~~ETLsTLrFAsRak~I 646 (943)
..+++||++||+||+|||.|
T Consensus 314 ~~~~~eTl~TL~fa~r~r~I 333 (333)
T cd01371 314 DYNYDETLSTLRYANRAKNI 333 (333)
T ss_pred cccHHHHHHHHHHHHHhhcC
Confidence 99999999999999999986
No 17
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=8.9e-63 Score=540.13 Aligned_cols=271 Identities=34% Similarity=0.523 Sum_probs=232.7
Q ss_pred CEEEEEEeCCCCchhhccCCeeEEeeeccCC---CeEEEEeC--CcCceeeecceeeCCCCCcccccccch-hhHHHhhC
Q 002276 364 NIRVFCRCRPLNSEETAAGSVMAVDFESVRD---GELTVISN--GAPKKTFKFDAVFGPQADQVDVFQDTA-PFANSVLD 437 (943)
Q Consensus 364 NIRV~~RVRPl~~~E~~~g~~~~V~~~s~~d---~~i~v~~~--g~~~ktF~FD~VF~~~asQeeVFeev~-pLV~svLd 437 (943)
||+|||||||+.+.|.... .++.....+. ..+.+... ....+.|.||+||+++++|++||+.+. |+|+++++
T Consensus 1 ~i~V~vRvRP~~~~e~~~~--~~v~~~~~~~~~~~~v~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~ 78 (319)
T cd01376 1 NVRVVVRVRPFLDCEEDSS--SCVRGIDSDQGQAKSVEIENPRNRGETKKYQFDAFYGTECTQEDIFSREVKPIVPHLLS 78 (319)
T ss_pred CcEEEEEeCcCCccccCCC--ceEEEeCCCCCcceEEEEeCCCCCCCccEEecCeEECCCCCHHHHHHHHHHHHHHHHhC
Confidence 7999999999988874332 2333322211 23343332 235689999999999999999999955 99999999
Q ss_pred CcceEEEeeCcccCccccccccCCCCCCccHHhHHHHHHHHHhhcccceeEEEEEEEEEecchhhhccccCCCCCCCccc
Q 002276 438 GYNVCIFAYGQTGTGKTFTMEGTKEARGVNFRTLEELFRIIKEREKLYRYDISVSVLEVYNEQIRDLLAVGSQPGAVSKR 517 (943)
Q Consensus 438 GyNvcIFAYGQTGSGKTyTM~G~~e~~GIIPRal~~LF~~i~~~~~~~~y~V~VSflEIYNE~I~DLL~~~~~~~~~~k~ 517 (943)
|||+||||||||||||||||+|+..++|||||++++||+.++... +.|.|++||+|||||.|+|||++. ...
T Consensus 79 G~n~~i~ayG~tgSGKTyTm~G~~~~~Glipr~~~~Lf~~~~~~~--~~~~v~~S~~EIy~e~v~DLL~~~------~~~ 150 (319)
T cd01376 79 GQNATVFAYGSTGAGKTHTMLGDPNEPGLIPRTLSDLLRMGRKQA--WTGAFSMSYYEIYNEKVYDLLEPA------KKE 150 (319)
T ss_pred CCceEEEEECCCCCCCcEEEeCCcCccchHHHHHHHHHHHHhhcc--ccceEEEEEEEEECCEeeEccCCC------CCC
Confidence 999999999999999999999999999999999999999887654 789999999999999999999764 246
Q ss_pred ceEEeCCCCceEcCCceEEEecChHHHHHHHHccccccccccCCCccCCCCceeeEEEEEEEEee-------hhchh---
Q 002276 518 LEVRQAGEGMHHVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRRELV-------EWGMH--- 587 (943)
Q Consensus 518 LeIred~~g~v~V~gLtev~V~S~eE~~~lL~~G~k~R~~asT~mN~~SSRSHsIftI~V~~~~~-------~~lVD--- 587 (943)
+.|++++.|+++|.|++++.|.|++|++.+|..|.++|.+++|.+|..|||||+||+|.|..... .++||
T Consensus 151 l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSRSH~i~~i~v~~~~~~~~~~s~l~~VDLAG 230 (319)
T cd01376 151 LPIREDKDGNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIKVTQPASNIQLEGKLNLIDLAG 230 (319)
T ss_pred ceEEEcCCCCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCCCeEEEEEEEEEECCCceEEEEEEEEECCC
Confidence 89999999999999999999999999999999999999999999999999999999999977532 34555
Q ss_pred --------------hh---------------hhhh---cCCCCCcccchHHhhhhcCCCcceeEEEecCCCCcChHhhHH
Q 002276 588 --------------KE---------------QAMA---SGSSRKNSKLTHLLQDSLGGDSKTLMFVQISPNENDLSETLC 635 (943)
Q Consensus 588 --------------kE---------------sALa---~~sPyRdSKLTrLLQDSLGGNSKTlMIv~ISPs~~~~~ETLs 635 (943)
+| .+|. .++|||+||||+||+|+|||||+|+||+||||...+++||++
T Consensus 231 sE~~~~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~~~ipyr~S~LT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl~ 310 (319)
T cd01376 231 SEDNRRTGNEGIRLKESAAINSSLFVLSKVVDALNKGLPRIPYRESKLTRLLQDSLGGGSRCIMVANIAPERSFYQDTLS 310 (319)
T ss_pred CCcccccCCccchhhhhhhhhhhHHHHHHHHHHHhcCCCcCCCccCHHHHHHHHhcCCCccEEEEEEeCCchhhHHHHHH
Confidence 11 1222 357999999999999999999999999999999999999999
Q ss_pred HHHHHhHhh
Q 002276 636 SLNFASRVR 644 (943)
Q Consensus 636 TLrFAsRak 644 (943)
||+||+|||
T Consensus 311 TL~fa~r~~ 319 (319)
T cd01376 311 TLNFASRSK 319 (319)
T ss_pred HHHHHHhhC
Confidence 999999986
No 18
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=2.1e-62 Score=537.62 Aligned_cols=275 Identities=42% Similarity=0.648 Sum_probs=243.0
Q ss_pred CCEEEEEEeCCCCchhhccCCeeEEeeeccCCCeEEEEeCCcCceeeecceeeCCCCCcccccccch-hhHHHhhCCcce
Q 002276 363 GNIRVFCRCRPLNSEETAAGSVMAVDFESVRDGELTVISNGAPKKTFKFDAVFGPQADQVDVFQDTA-PFANSVLDGYNV 441 (943)
Q Consensus 363 GNIRV~~RVRPl~~~E~~~g~~~~V~~~s~~d~~i~v~~~g~~~ktF~FD~VF~~~asQeeVFeev~-pLV~svLdGyNv 441 (943)
.+|+|+|||||+...|...+...++.+.+. ..+++. .+...+.|.||+||+++++|++||+.+. |+|+++++|||+
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~--~~v~~~-~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~G~n~ 78 (325)
T cd01369 2 CNIKVVCRFRPLNEKEELRGSKSIVKFPGE--DTVSIA-GSDDGKTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGYNG 78 (325)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEEcCC--CEEEec-CCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHHHcCccc
Confidence 489999999999998876666667766432 344443 3345689999999999999999999975 999999999999
Q ss_pred EEEeeCcccCccccccccCCC---CCCccHHhHHHHHHHHHhhcccceeEEEEEEEEEecchhhhccccCCCCCCCcccc
Q 002276 442 CIFAYGQTGTGKTFTMEGTKE---ARGVNFRTLEELFRIIKEREKLYRYDISVSVLEVYNEQIRDLLAVGSQPGAVSKRL 518 (943)
Q Consensus 442 cIFAYGQTGSGKTyTM~G~~e---~~GIIPRal~~LF~~i~~~~~~~~y~V~VSflEIYNE~I~DLL~~~~~~~~~~k~L 518 (943)
||||||||||||||||+|+.. ++|||||++++||+.+........|.|++||+|||||.|+|||++.. ..+
T Consensus 79 ~i~ayG~tgSGKT~Tm~G~~~~~~~~Giipr~~~~Lf~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~------~~l 152 (325)
T cd01369 79 TIFAYGQTGSGKTYTMEGPPGDPELKGIIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVSK------DNL 152 (325)
T ss_pred eEEEeCCCCCCceEEecCCCCccccCChHHHHHHHHHHHHhhccCCceEEEEEEEEEEECCChhhcccCcc------CCc
Confidence 999999999999999999987 89999999999999998877777899999999999999999997652 468
Q ss_pred eEEeCCCCceEcCCceEEEecChHHHHHHHHccccccccccCCCccCCCCceeeEEEEEEEEee---------hhchh--
Q 002276 519 EVRQAGEGMHHVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRRELV---------EWGMH-- 587 (943)
Q Consensus 519 eIred~~g~v~V~gLtev~V~S~eE~~~lL~~G~k~R~~asT~mN~~SSRSHsIftI~V~~~~~---------~~lVD-- 587 (943)
.+++++.++++|+|++++.|.|++|++.+|..|.++|++++|.+|..|||||+||+|.|.+.+. ..+||
T Consensus 153 ~i~~~~~~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~s~l~~VDLA 232 (325)
T cd01369 153 QVHEDKNRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFLITLKQENVETGSKKRGKLFLVDLA 232 (325)
T ss_pred eEEEcCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCccccccEEEEEEEEEEecCCCCEEEEEEEEEECC
Confidence 9999999999999999999999999999999999999999999999999999999999976432 23444
Q ss_pred ---------------hh---------------hhhh----cCCCCCcccchHHhhhhcCCCcceeEEEecCCCCcChHhh
Q 002276 588 ---------------KE---------------QAMA----SGSSRKNSKLTHLLQDSLGGDSKTLMFVQISPNENDLSET 633 (943)
Q Consensus 588 ---------------kE---------------sALa----~~sPyRdSKLTrLLQDSLGGNSKTlMIv~ISPs~~~~~ET 633 (943)
+| .+|+ .++||||||||+||+|+|||||+|+||+||||+..+++||
T Consensus 233 GsE~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~~~vpyR~S~LT~lL~~~L~g~s~t~~I~~vsp~~~~~~eT 312 (325)
T cd01369 233 GSEKVSKTGAEGQTLEEAKKINKSLSALGNVINALTDGKSTHIPYRDSKLTRILQDSLGGNSRTTLIICCSPSSYNESET 312 (325)
T ss_pred CCCcccccCCcchhHHHHHHHhHHHHHHHHHHHHHHcCCCCcCCCccCHHHHHHHHhcCCCCeEEEEEEeCCccccHHHH
Confidence 11 1222 3579999999999999999999999999999999999999
Q ss_pred HHHHHHHhHhhcc
Q 002276 634 LCSLNFASRVRGI 646 (943)
Q Consensus 634 LsTLrFAsRak~I 646 (943)
++||+||+||++|
T Consensus 313 l~TL~~a~r~~~i 325 (325)
T cd01369 313 LSTLRFGARAKTI 325 (325)
T ss_pred HHHHHHHHHhhcC
Confidence 9999999999986
No 19
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=2.9e-62 Score=539.44 Aligned_cols=276 Identities=37% Similarity=0.605 Sum_probs=241.8
Q ss_pred CEEEEEEeCCCCchhhccCCeeEEeeeccCCCeEEEEeCCcCceeeecceeeCCCCCcccccccch-hhHHHhhCCcceE
Q 002276 364 NIRVFCRCRPLNSEETAAGSVMAVDFESVRDGELTVISNGAPKKTFKFDAVFGPQADQVDVFQDTA-PFANSVLDGYNVC 442 (943)
Q Consensus 364 NIRV~~RVRPl~~~E~~~g~~~~V~~~s~~d~~i~v~~~g~~~ktF~FD~VF~~~asQeeVFeev~-pLV~svLdGyNvc 442 (943)
+|+|+|||||+...|...+...++.+... +..+++. ..+.|.||+||+++++|++||+.+. |+|+++++|||+|
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~-~~~v~~~----~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~ 76 (341)
T cd01372 2 SVRVAVRVRPLLPKELLEGCQVCVSVVPG-EPQVTVG----TDKSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGYNAT 76 (341)
T ss_pred CeEEEEECCCCCchhcccCCCeEEEEeCC-CCEEEec----CCcEEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCccc
Confidence 69999999999988887766666665433 2333331 1578999999999999999999977 9999999999999
Q ss_pred EEeeCcccCccccccccCC------CCCCccHHhHHHHHHHHHhhcccceeEEEEEEEEEecchhhhccccCCCCCCCcc
Q 002276 443 IFAYGQTGTGKTFTMEGTK------EARGVNFRTLEELFRIIKEREKLYRYDISVSVLEVYNEQIRDLLAVGSQPGAVSK 516 (943)
Q Consensus 443 IFAYGQTGSGKTyTM~G~~------e~~GIIPRal~~LF~~i~~~~~~~~y~V~VSflEIYNE~I~DLL~~~~~~~~~~k 516 (943)
|||||||||||||||+|+. .++|||||++++||+.+........|.|.|||+|||||.|+|||.+.. ....
T Consensus 77 i~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~---~~~~ 153 (341)
T cd01372 77 VLAYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSPST---SEKS 153 (341)
T ss_pred eeeecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhccccceEEEEEEEEEeECCeeecCCCCcc---cCCC
Confidence 9999999999999999974 579999999999999999877667999999999999999999998653 1235
Q ss_pred cceEEeCCCCceEcCCceEEEecChHHHHHHHHccccccccccCCCccCCCCceeeEEEEEEEEee--------------
Q 002276 517 RLEVRQAGEGMHHVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRRELV-------------- 582 (943)
Q Consensus 517 ~LeIred~~g~v~V~gLtev~V~S~eE~~~lL~~G~k~R~~asT~mN~~SSRSHsIftI~V~~~~~-------------- 582 (943)
.+.|++++.++++|.|++++.|.|++|++.+|..|.++|.+++|.+|..|||||+||+|.|.+...
T Consensus 154 ~l~i~e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~sSRsH~i~~i~v~~~~~~~~~~~~~~~~~~~ 233 (341)
T cd01372 154 PIQIREDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHAIFTITLEQTRKNGPIAPMSGDDKNS 233 (341)
T ss_pred CceEEECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCCCccCcCcEEEEEEEEEEecCCccccccccCCCc
Confidence 799999999999999999999999999999999999999999999999999999999999976543
Q ss_pred -----hhchh-----------------hh---------------hhhh------cCCCCCcccchHHhhhhcCCCcceeE
Q 002276 583 -----EWGMH-----------------KE---------------QAMA------SGSSRKNSKLTHLLQDSLGGDSKTLM 619 (943)
Q Consensus 583 -----~~lVD-----------------kE---------------sALa------~~sPyRdSKLTrLLQDSLGGNSKTlM 619 (943)
..+|| +| .++. .++|||+||||+||+|+|||||+|+|
T Consensus 234 ~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al~~~~~~~~~ipyR~S~LT~lL~~~Lgg~s~t~~ 313 (341)
T cd01372 234 TLTSKFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISALGDESKKGSHVPYRDSKLTRLLQDSLGGNSHTLM 313 (341)
T ss_pred eeeEEEEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHHHhcCCCCCCCCCcccHHHHHHHHhcCCCceEEE
Confidence 13444 11 1222 36799999999999999999999999
Q ss_pred EEecCCCCcChHhhHHHHHHHhHhhccc
Q 002276 620 FVQISPNENDLSETLCSLNFASRVRGIE 647 (943)
Q Consensus 620 Iv~ISPs~~~~~ETLsTLrFAsRak~Ik 647 (943)
|+||||+..+++||++||+||+||++|+
T Consensus 314 I~~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 314 IACVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred EEEeCCChhhHHHHHHHHHHHHHhccCC
Confidence 9999999999999999999999999985
No 20
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=6.2e-62 Score=533.40 Aligned_cols=272 Identities=35% Similarity=0.575 Sum_probs=237.3
Q ss_pred CEEEEEEeCCCCchhhccCCeeEEeeeccCCCeEEEEeCCcCceeeecceeeCCCCCcccccccch-hhHHHhhCCcceE
Q 002276 364 NIRVFCRCRPLNSEETAAGSVMAVDFESVRDGELTVISNGAPKKTFKFDAVFGPQADQVDVFQDTA-PFANSVLDGYNVC 442 (943)
Q Consensus 364 NIRV~~RVRPl~~~E~~~g~~~~V~~~s~~d~~i~v~~~g~~~ktF~FD~VF~~~asQeeVFeev~-pLV~svLdGyNvc 442 (943)
||+|+|||||+...|.. +...++.++. +..+.+. .....+.|.||+||+++++|++||+.+. |+|+.+++|||+|
T Consensus 1 ~V~V~vRvRP~~~~e~~-~~~~~~~~~~--~~~v~~~-~~~~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G~n~~ 76 (321)
T cd01374 1 KIKVSVRVRPLNPRESD-NEQVAWSIDN--DNTISLE-ESTPGQSFTFDRVFGGESTNREVYERIAKPVVRSALEGYNGT 76 (321)
T ss_pred CeEEEEEcCcCCccccc-CCcceEEECC--CCEEEEc-CCCCCeEEecCeEECCCCCHHHHHHHHHHHHHHHHHCCCcee
Confidence 79999999999988763 3334444432 2344433 3345789999999999999999999975 9999999999999
Q ss_pred EEeeCcccCccccccccCCCCCCccHHhHHHHHHHHHhhcccceeEEEEEEEEEecchhhhccccCCCCCCCcccceEEe
Q 002276 443 IFAYGQTGTGKTFTMEGTKEARGVNFRTLEELFRIIKEREKLYRYDISVSVLEVYNEQIRDLLAVGSQPGAVSKRLEVRQ 522 (943)
Q Consensus 443 IFAYGQTGSGKTyTM~G~~e~~GIIPRal~~LF~~i~~~~~~~~y~V~VSflEIYNE~I~DLL~~~~~~~~~~k~LeIre 522 (943)
|||||||||||||||+|+..++|||||++++||..+.... ...|.|+|||+|||||.|+|||++.. ..+++++
T Consensus 77 i~ayG~tgSGKT~T~~G~~~~~Gli~r~~~~lf~~~~~~~-~~~~~v~~S~~Eiy~e~v~DLL~~~~------~~l~i~~ 149 (321)
T cd01374 77 IFAYGQTSSGKTFTMSGDEQEPGIIPLAVRDIFQRIQDTP-DREFLLRVSYLEIYNEKIKDLLSPSP------QELRIRE 149 (321)
T ss_pred EEeecCCCCCCceeccCCCCCCchHHHHHHHHHHHHhccc-CceEEEEEEEEEEEcCEeEEccCCCC------CCceEEE
Confidence 9999999999999999999999999999999999997755 46899999999999999999998654 4699999
Q ss_pred CCCCceEcCCceEEEecChHHHHHHHHccccccccccCCCccCCCCceeeEEEEEEEEe------------ehhchh---
Q 002276 523 AGEGMHHVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRREL------------VEWGMH--- 587 (943)
Q Consensus 523 d~~g~v~V~gLtev~V~S~eE~~~lL~~G~k~R~~asT~mN~~SSRSHsIftI~V~~~~------------~~~lVD--- 587 (943)
++.++++|+|++++.|.|++|++.+|..|.++|.+++|.+|.+|||||+||+|.|.... ..++||
T Consensus 150 ~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~~s~l~~vDLAG 229 (321)
T cd01374 150 DPNKGVVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQLTIESRERGDSESGTVRVSTLNLIDLAG 229 (321)
T ss_pred CCCCCEEeCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccccccEEEEEEEEEEecCCCCCCcEEEEEEEEEECCC
Confidence 99999999999999999999999999999999999999999999999999999997654 224444
Q ss_pred -------------hh---------------hhhh-----cCCCCCcccchHHhhhhcCCCcceeEEEecCCCCcChHhhH
Q 002276 588 -------------KE---------------QAMA-----SGSSRKNSKLTHLLQDSLGGDSKTLMFVQISPNENDLSETL 634 (943)
Q Consensus 588 -------------kE---------------sALa-----~~sPyRdSKLTrLLQDSLGGNSKTlMIv~ISPs~~~~~ETL 634 (943)
+| .+++ .++||||||||+||+|+|||||+|+||+||||...+++||+
T Consensus 230 sE~~~~~~~~~~~~e~~~iN~Sl~~L~~vi~al~~~~~~~~vpyR~SkLT~lL~~~L~g~s~t~~i~~vsp~~~~~~eTl 309 (321)
T cd01374 230 SERASQTGAGERRKEGSFINKSLLTLGTVISKLSEGKNSGHIPYRDSKLTRILQPSLSGNARTAIICTISPASSHVEETL 309 (321)
T ss_pred CCccccCCCCccccccchhhhHHHHHHHHHHHHHhcCCCCcCCCcCCHHHHHHHHhcCCCceEEEEEEeCCccccHHHHH
Confidence 11 1222 45799999999999999999999999999999999999999
Q ss_pred HHHHHHhHhhcc
Q 002276 635 CSLNFASRVRGI 646 (943)
Q Consensus 635 sTLrFAsRak~I 646 (943)
+||+||+|+++|
T Consensus 310 ~TL~~a~r~~~i 321 (321)
T cd01374 310 NTLKFASRAKKV 321 (321)
T ss_pred HHHHHHHHHhcC
Confidence 999999999976
No 21
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=1.6e-61 Score=533.51 Aligned_cols=276 Identities=38% Similarity=0.567 Sum_probs=231.2
Q ss_pred CEEEEEEeCCCCchhhccCCeeEEe-------eeccCCCeEEEEeCCcCceeeecceeeCCCCCcccccccch-hhHHHh
Q 002276 364 NIRVFCRCRPLNSEETAAGSVMAVD-------FESVRDGELTVISNGAPKKTFKFDAVFGPQADQVDVFQDTA-PFANSV 435 (943)
Q Consensus 364 NIRV~~RVRPl~~~E~~~g~~~~V~-------~~s~~d~~i~v~~~g~~~ktF~FD~VF~~~asQeeVFeev~-pLV~sv 435 (943)
.|+|+|||||+...+... ..+. ....++.......++...+.|.||+||++ ++|++||+.+. |+|+++
T Consensus 1 ~i~V~vRvRP~~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~~q~~vy~~~~~p~v~~~ 76 (334)
T cd01375 1 TIQVFVRVRPTPTKQGSS---IKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-ASQEEVYETVAKPVVDSA 76 (334)
T ss_pred CeEEEEECCCCCCCCCcc---EEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC-CCHHHHHHHHHHHHHHHH
Confidence 489999999998744321 1111 11111111222333445678999999999 99999999987 999999
Q ss_pred hCCcceEEEeeCcccCccccccccCC---CCCCccHHhHHHHHHHHHhhcccceeEEEEEEEEEecchhhhccccCCCCC
Q 002276 436 LDGYNVCIFAYGQTGTGKTFTMEGTK---EARGVNFRTLEELFRIIKEREKLYRYDISVSVLEVYNEQIRDLLAVGSQPG 512 (943)
Q Consensus 436 LdGyNvcIFAYGQTGSGKTyTM~G~~---e~~GIIPRal~~LF~~i~~~~~~~~y~V~VSflEIYNE~I~DLL~~~~~~~ 512 (943)
++|||+||||||||||||||||+|+. .++|||||++++||+.++... ...|.|++||+|||||+|+|||++...+.
T Consensus 77 ~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~lf~~~~~~~-~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~ 155 (334)
T cd01375 77 LDGYNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQVFREVAMRA-TKTYTVHVSYLEIYNEQLYDLLGDTPEAL 155 (334)
T ss_pred hCCCccceeeecCCCCCCeEEccCCCCcccCCchHHHHHHHHHHHHHhcc-CcceEEEEEEEEEECCEeecCCCCCcccc
Confidence 99999999999999999999999976 478999999999999998765 36799999999999999999998775333
Q ss_pred CCcccceEEeCCCCceEcCCceEEEecChHHHHHHHHccccccccccCCCccCCCCceeeEEEEEEEE-----------e
Q 002276 513 AVSKRLEVRQAGEGMHHVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRRE-----------L 581 (943)
Q Consensus 513 ~~~k~LeIred~~g~v~V~gLtev~V~S~eE~~~lL~~G~k~R~~asT~mN~~SSRSHsIftI~V~~~-----------~ 581 (943)
.....+.|++++.++++|.|++++.|.+++|++.+|..|.++|.+++|.+|..|||||+||++.|... .
T Consensus 156 ~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~n~~sSRSH~i~~l~v~~~~~~~~~~~~~~s 235 (334)
T cd01375 156 ESLPAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRSHCIFTIHLESRSREAGSEVVRLS 235 (334)
T ss_pred ccCCceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcCcCCcCcCeEEEEEEEEEEecCCCCCceEEE
Confidence 34467999999999999999999999999999999999999999999999999999999999999865 1
Q ss_pred ehhchh-----------------hh---------------hhhh----cCCCCCcccchHHhhhhcCCCcceeEEEecCC
Q 002276 582 VEWGMH-----------------KE---------------QAMA----SGSSRKNSKLTHLLQDSLGGDSKTLMFVQISP 625 (943)
Q Consensus 582 ~~~lVD-----------------kE---------------sALa----~~sPyRdSKLTrLLQDSLGGNSKTlMIv~ISP 625 (943)
...+|| +| .++. .++||||||||+||+|+|||||+|+||+||||
T Consensus 236 ~l~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~~~~~ipyRdSkLT~lL~d~Lgg~~~t~~I~~vsp 315 (334)
T cd01375 236 KLNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKARTHVPYRNSKLTHVLRDSLGGNCKTVMLATIWV 315 (334)
T ss_pred EEEEEECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhcCCCceEEEEEEeCC
Confidence 224444 11 1111 46899999999999999999999999999999
Q ss_pred CCcChHhhHHHHHHHhHhh
Q 002276 626 NENDLSETLCSLNFASRVR 644 (943)
Q Consensus 626 s~~~~~ETLsTLrFAsRak 644 (943)
+..+++||++||+||+|++
T Consensus 316 ~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 316 EPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred chhhHHHHHHHHHHHHhcC
Confidence 9999999999999999985
No 22
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=1.8e-59 Score=515.41 Aligned_cols=284 Identities=46% Similarity=0.685 Sum_probs=250.7
Q ss_pred CEEEEEEeCCCCchhhccCCeeEEeeeccCCCeEEEEeC--CcCceeeecceeeCCCCCcccccccch-hhHHHhhCCcc
Q 002276 364 NIRVFCRCRPLNSEETAAGSVMAVDFESVRDGELTVISN--GAPKKTFKFDAVFGPQADQVDVFQDTA-PFANSVLDGYN 440 (943)
Q Consensus 364 NIRV~~RVRPl~~~E~~~g~~~~V~~~s~~d~~i~v~~~--g~~~ktF~FD~VF~~~asQeeVFeev~-pLV~svLdGyN 440 (943)
+|+|+|||||+...|...+...++.+...+...+.+... ....+.|.||+||+++++|++||+.+. |+|+.+++|||
T Consensus 1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~~G~~ 80 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSPKNRKEEKKFTFDKVFGATASQEDVFEETAAPLVDSVLEGYN 80 (335)
T ss_pred CcEEEEEcCcCCccchhcCCceEEEEcCCCCCEEEEeCCCCCCCCeEEecCEEECCCCChHHHHHHHHHHHHHHHhcCCc
Confidence 699999999999988877666677765554445555432 235689999999999999999999976 99999999999
Q ss_pred eEEEeeCcccCccccccccCCCCCCccHHhHHHHHHHHHhhcccceeEEEEEEEEEecchhhhccccCCCCCCCcccceE
Q 002276 441 VCIFAYGQTGTGKTFTMEGTKEARGVNFRTLEELFRIIKEREKLYRYDISVSVLEVYNEQIRDLLAVGSQPGAVSKRLEV 520 (943)
Q Consensus 441 vcIFAYGQTGSGKTyTM~G~~e~~GIIPRal~~LF~~i~~~~~~~~y~V~VSflEIYNE~I~DLL~~~~~~~~~~k~LeI 520 (943)
+||||||+|||||||||+|+.+++|||||++++||..+........|.|+|||+|||||.|+|||++. ...+.|
T Consensus 81 ~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~------~~~l~i 154 (335)
T smart00129 81 ATIFAYGQTGSGKTYTMSGTPDSPGIIPRALKDLFEKIDKLEEGWQFQVKVSYLEIYNEKIRDLLNPS------PKKLEI 154 (335)
T ss_pred eeEEEeCCCCCCCceEecCCCCCCCHHHHHHHHHHHHhhhcccCceEEEEEEEEEEECCEEEECcCCC------CCCcEE
Confidence 99999999999999999999999999999999999999887666789999999999999999999765 356999
Q ss_pred EeCCCCceEcCCceEEEecChHHHHHHHHccccccccccCCCccCCCCceeeEEEEEEEE-----------eehhchh--
Q 002276 521 RQAGEGMHHVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRRE-----------LVEWGMH-- 587 (943)
Q Consensus 521 red~~g~v~V~gLtev~V~S~eE~~~lL~~G~k~R~~asT~mN~~SSRSHsIftI~V~~~-----------~~~~lVD-- 587 (943)
++++.++++|.|++++.|.|++|++.+|..|.++|.+++|.+|..|||||+||+|.|.+. ....+||
T Consensus 155 ~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRsH~i~~l~v~~~~~~~~~~~~~~s~l~~VDLa 234 (335)
T smart00129 155 REDKKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFTITVESKIKNSSSGSGKASKLNLVDLA 234 (335)
T ss_pred EECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCCCcceEEEEEEEEEEecCCCCCCEEEEEEEEEECC
Confidence 999999999999999999999999999999999999999999999999999999999854 1224444
Q ss_pred ---------------hh---------------hhhh-----cCCCCCcccchHHhhhhcCCCcceeEEEecCCCCcChHh
Q 002276 588 ---------------KE---------------QAMA-----SGSSRKNSKLTHLLQDSLGGDSKTLMFVQISPNENDLSE 632 (943)
Q Consensus 588 ---------------kE---------------sALa-----~~sPyRdSKLTrLLQDSLGGNSKTlMIv~ISPs~~~~~E 632 (943)
+| .+++ .++|||+||||+||+++|||+++|+||+||||...+++|
T Consensus 235 Gse~~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~~~~~~ip~r~S~LT~lL~~~L~g~~~~~~i~~vsp~~~~~~e 314 (335)
T smart00129 235 GSERASKTGAEGDRLKEAGNINKSLSALGNVINALADGQKSRHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSLSNLEE 314 (335)
T ss_pred CCCccccccChhHHHHhhchhhhHHHHHHHHHHHHHhcCCCCCCCCcCcHhHHHHHHHcCCCCeEEEEEEcCCCccchHH
Confidence 11 1222 267999999999999999999999999999999999999
Q ss_pred hHHHHHHHhHhhccccccccc
Q 002276 633 TLCSLNFASRVRGIELGAAKK 653 (943)
Q Consensus 633 TLsTLrFAsRak~Ik~~~~~~ 653 (943)
|++||+||+++++|+++|.++
T Consensus 315 Tl~tL~~a~~~~~i~~~p~~~ 335 (335)
T smart00129 315 TLSTLRFASRAKEIKNKAIVN 335 (335)
T ss_pred HHHHHHHHHHHhhcccCCCcC
Confidence 999999999999999998653
No 23
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=9.9e-58 Score=499.56 Aligned_cols=274 Identities=44% Similarity=0.654 Sum_probs=237.0
Q ss_pred CEEEEEEeCCCCchhhccCCeeEEeeeccCCCeEEEEeCC----cCceeeecceeeCCCCCcccccccch-hhHHHhhCC
Q 002276 364 NIRVFCRCRPLNSEETAAGSVMAVDFESVRDGELTVISNG----APKKTFKFDAVFGPQADQVDVFQDTA-PFANSVLDG 438 (943)
Q Consensus 364 NIRV~~RVRPl~~~E~~~g~~~~V~~~s~~d~~i~v~~~g----~~~ktF~FD~VF~~~asQeeVFeev~-pLV~svLdG 438 (943)
+|+|||||||+...|.. +...++.+.. ...+.+.... ...+.|.||+||+++++|++||+.+. |+|+++++|
T Consensus 1 ~i~V~vRvrP~~~~~~~-~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~~G 77 (328)
T cd00106 1 NIRVVVRIRPLNGRESK-SEESCITVDD--NKTVTLTPPKDGRKAGPKSFTFDHVFDPNSTQEDVYETTAKPLVESVLEG 77 (328)
T ss_pred CeEEEEEcCCCCccccc-CCCcEEEECC--CCEEEEecCccccCcCceEEECCeEEcCCCCHHHHHHHHHHHHHHHHhCC
Confidence 69999999999877632 3334455432 2455555432 34689999999999999999999987 999999999
Q ss_pred cceEEEeeCcccCccccccccCCCCCCccHHhHHHHHHHHHhhcc-cceeEEEEEEEEEecchhhhccccCCCCCCCccc
Q 002276 439 YNVCIFAYGQTGTGKTFTMEGTKEARGVNFRTLEELFRIIKEREK-LYRYDISVSVLEVYNEQIRDLLAVGSQPGAVSKR 517 (943)
Q Consensus 439 yNvcIFAYGQTGSGKTyTM~G~~e~~GIIPRal~~LF~~i~~~~~-~~~y~V~VSflEIYNE~I~DLL~~~~~~~~~~k~ 517 (943)
||+||||||||||||||||+|+..++|||||++++||..+..... ...|.|++||+|||||+|+|||++.. ....
T Consensus 78 ~~~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~----~~~~ 153 (328)
T cd00106 78 YNGTIFAYGQTGSGKTYTMFGSPKDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEP----PSKP 153 (328)
T ss_pred CceeEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCC----CCCC
Confidence 999999999999999999999999999999999999999987643 56899999999999999999998752 2457
Q ss_pred ceEEeCCCCceEcCCceEEEecChHHHHHHHHccccccccccCCCccCCCCceeeEEEEEEEEee-----------hhch
Q 002276 518 LEVRQAGEGMHHVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRRELV-----------EWGM 586 (943)
Q Consensus 518 LeIred~~g~v~V~gLtev~V~S~eE~~~lL~~G~k~R~~asT~mN~~SSRSHsIftI~V~~~~~-----------~~lV 586 (943)
+.|++++.++++|.|++++.|.|++|++.+|..|.++|.+++|.+|..|||||+||+|.|..... ..+|
T Consensus 154 l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ssRSH~i~~i~v~~~~~~~~~~~~~~s~l~~V 233 (328)
T cd00106 154 LSLREDPKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHAIFTIHVEQRNTTNDGRSIKSSKLNLV 233 (328)
T ss_pred cEEEEcCCCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCCCCcCcCcEEEEEEEEEEecCCCCccEEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999976532 2344
Q ss_pred h-----------------hh---------------hhh---h--cCCCCCcccchHHhhhhcCCCcceeEEEecCCCCcC
Q 002276 587 H-----------------KE---------------QAM---A--SGSSRKNSKLTHLLQDSLGGDSKTLMFVQISPNEND 629 (943)
Q Consensus 587 D-----------------kE---------------sAL---a--~~sPyRdSKLTrLLQDSLGGNSKTlMIv~ISPs~~~ 629 (943)
| .| .++ . .++|||+||||+||+|+|||+++|+||+||||...+
T Consensus 234 DLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~~~~ip~r~SkLT~lL~~~l~g~~~t~~I~~vsp~~~~ 313 (328)
T cd00106 234 DLAGSERAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQKKKHIPYRDSKLTRLLQDSLGGNSKTLMIANISPSSEN 313 (328)
T ss_pred ECCCCCcccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcCCCCcCCCcCcHHHHHHHHhcCCCCeEEEEEEeCCchhh
Confidence 4 11 111 1 457999999999999999999999999999999999
Q ss_pred hHhhHHHHHHHhHhh
Q 002276 630 LSETLCSLNFASRVR 644 (943)
Q Consensus 630 ~~ETLsTLrFAsRak 644 (943)
++||++||+||+|||
T Consensus 314 ~~eTl~tL~~a~r~~ 328 (328)
T cd00106 314 YDETLSTLRFASRAK 328 (328)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999999985
No 24
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=1.9e-58 Score=506.57 Aligned_cols=275 Identities=41% Similarity=0.633 Sum_probs=231.8
Q ss_pred EeCCCCchhhccCCeeEEeeeccCCCeEEE---EeCCcCceeeecceeeCCCCCcccccccc-hhhHHHhhCCcceEEEe
Q 002276 370 RCRPLNSEETAAGSVMAVDFESVRDGELTV---ISNGAPKKTFKFDAVFGPQADQVDVFQDT-APFANSVLDGYNVCIFA 445 (943)
Q Consensus 370 RVRPl~~~E~~~g~~~~V~~~s~~d~~i~v---~~~g~~~ktF~FD~VF~~~asQeeVFeev-~pLV~svLdGyNvcIFA 445 (943)
||||++..|...+....+............ .......+.|.||+||+++++|++||+.+ .|+|+++++|||+||||
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~a 80 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQDSNQNKQSVNSNNSQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATIFA 80 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETTETEEEEEETTEEETTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEEEE
T ss_pred CcCCCCHHHHhCCCcEEEEecCCccccccccccccCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEEEe
Confidence 999999999988877666543211111111 11233467999999999999999999996 59999999999999999
Q ss_pred eCcccCccccccccC--CCCCCccHHhHHHHHHHHHhhccc--ceeEEEEEEEEEecchhhhccccCCCCCCCcccceEE
Q 002276 446 YGQTGTGKTFTMEGT--KEARGVNFRTLEELFRIIKEREKL--YRYDISVSVLEVYNEQIRDLLAVGSQPGAVSKRLEVR 521 (943)
Q Consensus 446 YGQTGSGKTyTM~G~--~e~~GIIPRal~~LF~~i~~~~~~--~~y~V~VSflEIYNE~I~DLL~~~~~~~~~~k~LeIr 521 (943)
||+|||||||||+|+ ..++|||||++++||..+...... +.|.|+|||+|||||.|+|||++... .....+.|+
T Consensus 81 yG~tgSGKT~Tm~G~~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~--~~~~~l~i~ 158 (335)
T PF00225_consen 81 YGQTGSGKTYTMFGSNDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNS--KSRKPLKIR 158 (335)
T ss_dssp EESTTSSHHHHHTBSTSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSS--STTSEBEEE
T ss_pred eccccccccccccccccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCcccc--cccccccee
Confidence 999999999999999 889999999999999999886654 78999999999999999999987641 123479999
Q ss_pred eCCCCc-eEcCCceEEEecChHHHHHHHHccccccccccCCCccCCCCceeeEEEEEEEEee-------------hhchh
Q 002276 522 QAGEGM-HHVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRRELV-------------EWGMH 587 (943)
Q Consensus 522 ed~~g~-v~V~gLtev~V~S~eE~~~lL~~G~k~R~~asT~mN~~SSRSHsIftI~V~~~~~-------------~~lVD 587 (943)
+++..+ ++|.|++++.|.|+++++.+|..|.++|.+++|.+|..|||||+||+|.|..... ..+||
T Consensus 159 ~~~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~~~~~~s~l~~vD 238 (335)
T PF00225_consen 159 EDSNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTASTKMNARSSRSHAIFTIHVEQKDRDPSDDEESVKHSRLTFVD 238 (335)
T ss_dssp EETTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCTSSSCTHHGGGSEEEEEEEEEEEETTTTTEEEEEEEEEEEEEE
T ss_pred eccccccceeeccccccccccccccccccchhhccccccccccccccccccccccccccccccccccccceeecceeeee
Confidence 999855 9999999999999999999999999999999999999999999999999976531 23444
Q ss_pred ------------------hh---------------hhh-----hcCCCCCcccchHHhhhhcCCCcceeEEEecCCCCcC
Q 002276 588 ------------------KE---------------QAM-----ASGSSRKNSKLTHLLQDSLGGDSKTLMFVQISPNEND 629 (943)
Q Consensus 588 ------------------kE---------------sAL-----a~~sPyRdSKLTrLLQDSLGGNSKTlMIv~ISPs~~~ 629 (943)
+| .+| ..++|||+||||+||+|+|||||+|+||+||||...+
T Consensus 239 LaGsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L~~~~~~~~vpyr~SkLT~lL~d~l~g~s~t~~I~~vsp~~~~ 318 (335)
T PF00225_consen 239 LAGSERLKKSGASDGQRLKESSNINKSLSALGNVIRALAQGSKQSHVPYRDSKLTRLLKDSLGGNSKTILIVCVSPSSED 318 (335)
T ss_dssp EEESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSTSSSCGGGSHHHHHTGGGTSSSSEEEEEEEE-SBGGG
T ss_pred cccccccccccccccccccccceecchhhhhhhhHhhhhccccchhhhhhcccccceecccccccccceeEEEcCCcccc
Confidence 11 122 2346999999999999999999999999999999999
Q ss_pred hHhhHHHHHHHhHhhcc
Q 002276 630 LSETLCSLNFASRVRGI 646 (943)
Q Consensus 630 ~~ETLsTLrFAsRak~I 646 (943)
++||++||+||+++++|
T Consensus 319 ~~eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 319 YEETLSTLRFASRAREI 335 (335)
T ss_dssp HHHHHHHHHHHHHHTTE
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 99999999999999986
No 25
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.3e-54 Score=496.13 Aligned_cols=288 Identities=34% Similarity=0.531 Sum_probs=243.4
Q ss_pred hhcCCEEEEEEeCCCCchhhccCCeeEEeeeccCCCeEEEE-----------eCCcCceeeecceeeCCCCCcccccccc
Q 002276 360 ELKGNIRVFCRCRPLNSEETAAGSVMAVDFESVRDGELTVI-----------SNGAPKKTFKFDAVFGPQADQVDVFQDT 428 (943)
Q Consensus 360 ELKGNIRV~~RVRPl~~~E~~~g~~~~V~~~s~~d~~i~v~-----------~~g~~~ktF~FD~VF~~~asQeeVFeev 428 (943)
+++..|.||||+||+.+.....++..+++ +.++.+. +.+...+.|.|.+||+|+++|.+||+.+
T Consensus 28 ~~~d~v~v~~rvrP~~~~~~~~g~l~v~n-----~~tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~tQ~dvF~~~ 102 (809)
T KOG0247|consen 28 ESKDPVLVVCRVRPLSDASEDEGCLRVIN-----EETIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVTQADVFDTT 102 (809)
T ss_pred hhhcchheeEeecCCCCCccccceEEEec-----cceeEeeCcHHHHhhhccCccceeeEeeeeeecCCCccHHHHHHHH
Confidence 67889999999999986444445555554 2333332 1233467899999999999999999997
Q ss_pred h-hhHHHhhCCcceEEEeeCcccCccccccccCCCCCCccHHhHHHHHHHHHhh--------------------------
Q 002276 429 A-PFANSVLDGYNVCIFAYGQTGTGKTFTMEGTKEARGVNFRTLEELFRIIKER-------------------------- 481 (943)
Q Consensus 429 ~-pLV~svLdGyNvcIFAYGQTGSGKTyTM~G~~e~~GIIPRal~~LF~~i~~~-------------------------- 481 (943)
+ |+|..++.|.|..+|+||-|||||||||+|++..+||+||+++-||..|+.+
T Consensus 103 ~~plV~dlLkgqn~LlFTyGVTgSGKTYTm~G~~~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~alL~ 182 (809)
T KOG0247|consen 103 VAPLVKDLLKGQNSLLFTYGVTGSGKTYTMTGTPDRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDALLQ 182 (809)
T ss_pred hHHHHHHHHcccceeEEEeeccCCCceEEeecCCCCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHHHHHHh
Confidence 6 9999999999999999999999999999999999999999999999988531
Q ss_pred --------------------------------------cccceeEEEEEEEEEecchhhhccccCCCCCCCcccceEEeC
Q 002276 482 --------------------------------------EKLYRYDISVSVLEVYNEQIRDLLAVGSQPGAVSKRLEVRQA 523 (943)
Q Consensus 482 --------------------------------------~~~~~y~V~VSflEIYNE~I~DLL~~~~~~~~~~k~LeIred 523 (943)
.....|.|+|||+|||||.|||||.+.+..+...+...+++|
T Consensus 183 lkr~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~~~~~~ll~~d 262 (809)
T KOG0247|consen 183 LKREAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQGKLQKLKLLRED 262 (809)
T ss_pred hhhhhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhccccccchhhhhhhhhhc
Confidence 012458999999999999999999987665555555778999
Q ss_pred CCCceEcCCceEEEecChHHHHHHHHccccccccccCCCccCCCCceeeEEEEEEEEee-----------hhchh-----
Q 002276 524 GEGMHHVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRRELV-----------EWGMH----- 587 (943)
Q Consensus 524 ~~g~v~V~gLtev~V~S~eE~~~lL~~G~k~R~~asT~mN~~SSRSHsIftI~V~~~~~-----------~~lVD----- 587 (943)
.+|..||.|+++|.|.|.+|++++|+.|.++|++|+|..|..|||||+||+|.+-.-.. ..+||
T Consensus 263 ~~~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIkl~q~~~~~~s~~i~vSqlsLvDLAGSE 342 (809)
T KOG0247|consen 263 TNGNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIKLVQAPRSQDSNQITVSQLSLVDLAGSE 342 (809)
T ss_pred cCCCeeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEEeeecccccccCceeEEeeeeeecccch
Confidence 99999999999999999999999999999999999999999999999999998844221 24454
Q ss_pred ------------hh-----------------------hhhhcCCCCCcccchHHhhhhcCCCcceeEEEecCCCCcChHh
Q 002276 588 ------------KE-----------------------QAMASGSSRKNSKLTHLLQDSLGGDSKTLMFVQISPNENDLSE 632 (943)
Q Consensus 588 ------------kE-----------------------sALa~~sPyRdSKLTrLLQDSLGGNSKTlMIv~ISPs~~~~~E 632 (943)
+| ..-...+||||||||+++|.+|-|..+..|||||+|.+.+|+|
T Consensus 343 Rt~rtq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLThlfq~~f~G~gki~MIV~vnp~~e~YdE 422 (809)
T KOG0247|consen 343 RTNRTQNSGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTHLFKNYFDGKGKIRMIVCVNPKAEDYDE 422 (809)
T ss_pred hcccccchhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHHHHHHhcCCCCcEEEEEecCCchhhHHH
Confidence 11 1112457999999999999999999999999999999999999
Q ss_pred hHHHHHHHhHhhcccccccc
Q 002276 633 TLCSLNFASRVRGIELGAAK 652 (943)
Q Consensus 633 TLsTLrFAsRak~Ik~~~~~ 652 (943)
+++.|+||.-+..|.+....
T Consensus 423 nl~vlkFaeiaq~v~v~~~~ 442 (809)
T KOG0247|consen 423 NLNVLKFAEIAQEVEVARPV 442 (809)
T ss_pred HHHHHHHHHhcccccccCcc
Confidence 99999999999999765543
No 26
>KOG0246 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=2.6e-52 Score=468.69 Aligned_cols=277 Identities=33% Similarity=0.507 Sum_probs=235.6
Q ss_pred CEEEEEEeCCCCchhhccCCeeEEeeeccCCCeEEEEeC--------CcCceeeecceeeCCCCCcccccccch-hhHHH
Q 002276 364 NIRVFCRCRPLNSEETAAGSVMAVDFESVRDGELTVISN--------GAPKKTFKFDAVFGPQADQVDVFQDTA-PFANS 434 (943)
Q Consensus 364 NIRV~~RVRPl~~~E~~~g~~~~V~~~s~~d~~i~v~~~--------g~~~ktF~FD~VF~~~asQeeVFeev~-pLV~s 434 (943)
.|.|+||-||++..|.......+|++++. ..+++... .-..+.|.||++||..++++.||..++ |||..
T Consensus 209 rI~VCVRKRPLnkkE~~~keiDvisvps~--~~l~vHEpk~kVDLtkYlEn~~F~FDyaFDe~~sNe~VYrfTa~PlV~~ 286 (676)
T KOG0246|consen 209 RICVCVRKRPLNKKELTKKEIDVISVPSK--NVLVVHEPKLKVDLTKYLENQKFRFDYAFDESASNELVYRFTAKPLVKT 286 (676)
T ss_pred eEEEEeecCCCCchhccccccceEecccc--ceEEeeccccccchHHHHhhceEEEeeecccccchHHHHHHhhhHHHHH
Confidence 69999999999999988777667766432 22222211 113579999999999999999999877 99999
Q ss_pred hhCCcceEEEeeCcccCccccccccCC------CCCCccHHhHHHHHHHHHh-hcccceeEEEEEEEEEecchhhhcccc
Q 002276 435 VLDGYNVCIFAYGQTGTGKTFTMEGTK------EARGVNFRTLEELFRIIKE-REKLYRYDISVSVLEVYNEQIRDLLAV 507 (943)
Q Consensus 435 vLdGyNvcIFAYGQTGSGKTyTM~G~~------e~~GIIPRal~~LF~~i~~-~~~~~~y~V~VSflEIYNE~I~DLL~~ 507 (943)
+|+|--+|+||||||||||||||-|.- -..||--++.+++|..+.. .-....+.|+|||||||+.+|||||+.
T Consensus 287 IF~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvfDLL~~ 366 (676)
T KOG0246|consen 287 IFEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVYDLLND 366 (676)
T ss_pred HHhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchhhhhcc
Confidence 999999999999999999999997752 2469999999999999876 223467899999999999999999964
Q ss_pred CCCCCCCcccceEEeCCCCceEcCCceEEEecChHHHHHHHHccccccccccCCCccCCCCceeeEEEEEEEEe--e---
Q 002276 508 GSQPGAVSKRLEVRQAGEGMHHVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRREL--V--- 582 (943)
Q Consensus 508 ~~~~~~~~k~LeIred~~g~v~V~gLtev~V~S~eE~~~lL~~G~k~R~~asT~mN~~SSRSHsIftI~V~~~~--~--- 582 (943)
+++|.+.+|+++.+.|-||++..|.+.+|++++|..|+..|+++.|..|..|||||+||+|.++... .
T Consensus 367 -------k~KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~SSRSHAvfQIilr~~~~~k~hG 439 (676)
T KOG0246|consen 367 -------KKKLRVLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNSSRSHAVFQIILRKHGEFKLHG 439 (676)
T ss_pred -------ccceEEeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcccccccceeEeeeeecCCcceeEe
Confidence 4679999999999999999999999999999999999999999999999999999999999886533 1
Q ss_pred -hhchh-------------------------------hh--hhhh---cCCCCCcccchHHhhhhcCC-CcceeEEEecC
Q 002276 583 -EWGMH-------------------------------KE--QAMA---SGSSRKNSKLTHLLQDSLGG-DSKTLMFVQIS 624 (943)
Q Consensus 583 -~~lVD-------------------------------kE--sALa---~~sPyRdSKLTrLLQDSLGG-NSKTlMIv~IS 624 (943)
..++| +| .||. .+.|||.||||.+|+|||-| ||+|+||+|||
T Consensus 440 KfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~nk~H~PFR~SKLTqVLRDSFIGenSrTcMIA~IS 519 (676)
T KOG0246|consen 440 KFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKSHLPFRGSKLTQVLRDSFIGENSRTCMIATIS 519 (676)
T ss_pred EEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCchhhhHHHHHHHhhcCCCCceEEEEEeC
Confidence 12333 11 2332 35799999999999999988 99999999999
Q ss_pred CCCcChHhhHHHHHHHhHhhccccc
Q 002276 625 PNENDLSETLCSLNFASRVRGIELG 649 (943)
Q Consensus 625 Ps~~~~~ETLsTLrFAsRak~Ik~~ 649 (943)
|...+.+.||+|||||.|+|.....
T Consensus 520 Pg~~ScEhTLNTLRYAdRVKeLsv~ 544 (676)
T KOG0246|consen 520 PGISSCEHTLNTLRYADRVKELSVD 544 (676)
T ss_pred CCcchhhhhHHHHHHHHHHHhhcCC
Confidence 9999999999999999999986543
No 27
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=4.6e-53 Score=497.14 Aligned_cols=296 Identities=34% Similarity=0.536 Sum_probs=252.5
Q ss_pred eCCCCchhhccCCeeEEeeeccCCCeEEEEeCCcCceeeecceeeCCCCCcccccccch-hhHHHhhCCcceEEEeeCcc
Q 002276 371 CRPLNSEETAAGSVMAVDFESVRDGELTVISNGAPKKTFKFDAVFGPQADQVDVFQDTA-PFANSVLDGYNVCIFAYGQT 449 (943)
Q Consensus 371 VRPl~~~E~~~g~~~~V~~~s~~d~~i~v~~~g~~~ktF~FD~VF~~~asQeeVFeev~-pLV~svLdGyNvcIFAYGQT 449 (943)
|||+...|...|+..|+.+.+ .+..+++ + ...+|+||+||+...+|.++|+.+. |+++.+++|||+|++|||||
T Consensus 1 vRpl~~~e~~~g~~~c~~~~~-~~pqv~i--g--~~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatvlaygQt 75 (913)
T KOG0244|consen 1 VRPLKQMEEEQGCRRCTEVSP-RTPQVAI--G--KDASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATVLAYGQT 75 (913)
T ss_pred CCCccchHHHhcchhhcccCC-CCCceee--c--CCcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcceeeeeccc
Confidence 799999999999988887432 2333333 2 2468999999999999999999866 99999999999999999999
Q ss_pred cCccccccccC----CCCCCccHHhHHHHHHHHHhhcccceeEEEEEEEEEecchhhhccccCCCCCCCcccceEEeCCC
Q 002276 450 GTGKTFTMEGT----KEARGVNFRTLEELFRIIKEREKLYRYDISVSVLEVYNEQIRDLLAVGSQPGAVSKRLEVRQAGE 525 (943)
Q Consensus 450 GSGKTyTM~G~----~e~~GIIPRal~~LF~~i~~~~~~~~y~V~VSflEIYNE~I~DLL~~~~~~~~~~k~LeIred~~ 525 (943)
||||||||-+. .+..|+|||++.++|..+..... ..|.|.|||+|||+|.|+|||.++. ....+.+++ +.
T Consensus 76 gsgkTytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~~-~~f~i~vs~vely~e~v~dl~~~~~----~~~~i~~~e-~~ 149 (913)
T KOG0244|consen 76 GSGKTYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTES-FVFRITVSFVELYNEEVLDLLKPSR----LKANIKLRE-PK 149 (913)
T ss_pred CCCceeecccccccccccCCcCcchHHHHHHHHHhhhc-cceeeeeeeeeccchhhhhhcChhh----hhhceeccc-cC
Confidence 99999999876 33469999999999999988665 7899999999999999999998543 234577777 78
Q ss_pred CceEcCCceEEEecChHHHHHHHHccccccccccCCCccCCCCceeeEEEEEEEE----------eehhchh--------
Q 002276 526 GMHHVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRRE----------LVEWGMH-------- 587 (943)
Q Consensus 526 g~v~V~gLtev~V~S~eE~~~lL~~G~k~R~~asT~mN~~SSRSHsIftI~V~~~----------~~~~lVD-------- 587 (943)
|.+.+.|++++.|.+..++...|..|...|++++|+||..|||||+||++.+.+. ...++||
T Consensus 150 g~it~~glte~tv~~~~q~~~~L~~g~~~RtvasTnMN~qssRshAifti~lkq~kk~~~~s~~~sKlhlVDLAGSER~k 229 (913)
T KOG0244|consen 150 GEITIRGLTEKTVRMKLQLLSRLEKGSLERTVASTNMNAQSSRSHAIFTITLKQRKKLSKRSSFCSKLHLVDLAGSERVK 229 (913)
T ss_pred CceEEEeehHHHHHHHHHHHHHHHhchHHHHHHHHhcchhhhhhhHHHHHHHHHHHHhhccchhhhhhheeecccccccc
Confidence 8899999999999999999999999999999999999999999999999887542 1224555
Q ss_pred ---------hh---------------hhh-----hcCCCCCcccchHHhhhhcCCCcceeEEEecCCCCcChHhhHHHHH
Q 002276 588 ---------KE---------------QAM-----ASGSSRKNSKLTHLLQDSLGGDSKTLMFVQISPNENDLSETLCSLN 638 (943)
Q Consensus 588 ---------kE---------------sAL-----a~~sPyRdSKLTrLLQDSLGGNSKTlMIv~ISPs~~~~~ETLsTLr 638 (943)
+| +|| ..++||||||||+|||||||||+.|+||+||||+..++.||++||+
T Consensus 230 kT~a~gdrlKEgInIN~gLL~LgnVIsaLg~~kk~~~vpyRdSkltrlLQdslgGns~tlmiaCiSpadsn~~EtlnTl~ 309 (913)
T KOG0244|consen 230 KTKAEGDRLKEGININGGLLALGNVISALGEAKKGGEVPYRDSKLTRLLQDSLGGNSDTLMIACISPADSNAQETLNTLR 309 (913)
T ss_pred ccccchhhhhhccCcchHHHHHHHHHHHHHhhhcCCcccchHHHHHHHHHHHhcCCcceeeeeecChhhhhhhhHHHHHH
Confidence 11 233 3468999999999999999999999999999999999999999999
Q ss_pred HHhHhhccccccccccCC-hHHHHHHHHHHHHHHHHHhhh
Q 002276 639 FASRVRGIELGAAKKQLD-TSELLRYKQMVEKTKQELKSR 677 (943)
Q Consensus 639 FAsRak~Ik~~~~~~~~~-~~el~rlk~~ie~LK~eL~~~ 677 (943)
||.||++|++.|++|+++ ..++..++.+++.|+.+|...
T Consensus 310 ya~Rak~iknk~vvN~d~~~~~~~~lK~ql~~l~~ell~~ 349 (913)
T KOG0244|consen 310 YADRAKQIKNKPVVNQDPKSFEMLKLKAQLEPLQVELLSK 349 (913)
T ss_pred HhhHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999954 455677888888888777554
No 28
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=7.1e-50 Score=467.67 Aligned_cols=243 Identities=40% Similarity=0.616 Sum_probs=221.8
Q ss_pred ceeeecceeeCCCCCcccccccch-hhHHHhhCCcceEEEeeCcccCccccccccCCCCCCccHHhHHHHHHHHHhhccc
Q 002276 406 KKTFKFDAVFGPQADQVDVFQDTA-PFANSVLDGYNVCIFAYGQTGTGKTFTMEGTKEARGVNFRTLEELFRIIKEREKL 484 (943)
Q Consensus 406 ~ktF~FD~VF~~~asQeeVFeev~-pLV~svLdGyNvcIFAYGQTGSGKTyTM~G~~e~~GIIPRal~~LF~~i~~~~~~ 484 (943)
..+|.||+||++.++|++||+.+. |+++++++|||+||||||||||||||||.|..+.+||||+++.+||+.+......
T Consensus 55 ~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~N~TvfayGqTgsgKtyt~~G~~~~~Gii~~~l~~lf~~l~~~~~~ 134 (568)
T COG5059 55 EGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSGTEEEPGIIPLSLKELFSKLEDLSMT 134 (568)
T ss_pred ceEEEEeeccCCCCcHHHHHHHhhhhHHHHHHhcccceEEEEcccCCCceeEeecCccccchHHHHHHHHHHHHHhcccC
Confidence 568999999999999999999865 8999999999999999999999999999999999999999999999999987766
Q ss_pred ceeEEEEEEEEEecchhhhccccCCCCCCCcccceEEeCCCCceEcCCceEEEecChHHHHHHHHccccccccccCCCcc
Q 002276 485 YRYDISVSVLEVYNEQIRDLLAVGSQPGAVSKRLEVRQAGEGMHHVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANE 564 (943)
Q Consensus 485 ~~y~V~VSflEIYNE~I~DLL~~~~~~~~~~k~LeIred~~g~v~V~gLtev~V~S~eE~~~lL~~G~k~R~~asT~mN~ 564 (943)
..|.|.+||+|||||+++|||.+... .+.++++..++++|.|+++..|.+.+|++.+|..|..+|.++.|.+|.
T Consensus 135 ~~~~v~is~lEiYnEk~~DLl~~~~~------~~~~~~~~~~~v~v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n~ 208 (568)
T COG5059 135 KDFAVSISYLEIYNEKIYDLLSPNEE------SLNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEIND 208 (568)
T ss_pred cceeeEeehhHHHhhHHHhhccCccc------cccccccCCCceEeecceEEecCChHHHHHHHHHhhhhcccccchhcc
Confidence 78999999999999999999986542 277899999999999999999999999999999999999999999999
Q ss_pred CCCCceeeEEEEEEEEe---------ehhchh-----------------hh---------------hhhh-----cCCCC
Q 002276 565 HSSRSHCMHCVMVRREL---------VEWGMH-----------------KE---------------QAMA-----SGSSR 598 (943)
Q Consensus 565 ~SSRSHsIftI~V~~~~---------~~~lVD-----------------kE---------------sALa-----~~sPy 598 (943)
.|||||+||++.+.+.. ..++|| +| .+|. .++||
T Consensus 209 ~ssRshsi~~i~~~~~~~~~~~~~~~~l~lvDLagSE~~~~~~~~~~r~~E~~~iN~sLl~Lg~vI~~L~~~~~~~~ipy 288 (568)
T COG5059 209 ESSRSHSIFQIELASKNKVSGTSETSKLSLVDLAGSERAARTGNRGTRLKEGASINKSLLTLGNVINALGDKKKSGHIPY 288 (568)
T ss_pred ccccceEEEEEEEEEeccCccceecceEEEEeeccccccchhhcccchhhhhhhhHhhHHHHHHHHHHHhccccCCccch
Confidence 99999999999997754 234444 11 2333 35799
Q ss_pred CcccchHHhhhhcCCCcceeEEEecCCCCcChHhhHHHHHHHhHhhcccccccccc
Q 002276 599 KNSKLTHLLQDSLGGDSKTLMFVQISPNENDLSETLCSLNFASRVRGIELGAAKKQ 654 (943)
Q Consensus 599 RdSKLTrLLQDSLGGNSKTlMIv~ISPs~~~~~ETLsTLrFAsRak~Ik~~~~~~~ 654 (943)
|+||||||||++|||+++|.|||||+|...+++||++||+||+||++|++.+..+.
T Consensus 289 ReskLTRlLq~sLgG~~~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~ 344 (568)
T COG5059 289 RESKLTRLLQDSLGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNS 344 (568)
T ss_pred hhhHHHHHHHHhcCCCccEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccC
Confidence 99999999999999999999999999999999999999999999999999888874
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=1.9e-36 Score=308.65 Aligned_cols=132 Identities=50% Similarity=0.758 Sum_probs=117.9
Q ss_pred ccccchhhHHHhhCCcceEEEeeCcccCccccccccCCCCCCccHHhHHHHHHHHHhhcccceeEEEEEEEEEecchhhh
Q 002276 424 VFQDTAPFANSVLDGYNVCIFAYGQTGTGKTFTMEGTKEARGVNFRTLEELFRIIKEREKLYRYDISVSVLEVYNEQIRD 503 (943)
Q Consensus 424 VFeev~pLV~svLdGyNvcIFAYGQTGSGKTyTM~G~~e~~GIIPRal~~LF~~i~~~~~~~~y~V~VSflEIYNE~I~D 503 (943)
||+.+.|+|..+++|||+||||||||||||||||+|+..++|||||++++
T Consensus 8 vf~~~~~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~~~~Giip~~~~~------------------------------ 57 (186)
T cd01363 8 VFRDVGPLLQSALDGYNVCIFAYGQTGSGKTYTMEGKREGAGIIPRTVTD------------------------------ 57 (186)
T ss_pred HHHHHHHHHHHHhCCcceeEEEECCCCCcceEecCCCCCCCCcchHHHHH------------------------------
Confidence 99998899999999999999999999999999999999999999999887
Q ss_pred ccccCCCCCCCcccceEEeCCCCceEcCCceEEEecChHHHHHHHHccccccccccCCCccCCCCceeeEEEEEEEEee-
Q 002276 504 LLAVGSQPGAVSKRLEVRQAGEGMHHVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRRELV- 582 (943)
Q Consensus 504 LL~~~~~~~~~~k~LeIred~~g~v~V~gLtev~V~S~eE~~~lL~~G~k~R~~asT~mN~~SSRSHsIftI~V~~~~~- 582 (943)
+++++..|.++|.+++|.+|+.|||||+||+|.+.....
T Consensus 58 ----------------------------------------~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~~~~ 97 (186)
T cd01363 58 ----------------------------------------VIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNAL 97 (186)
T ss_pred ----------------------------------------HHHHHhhccccccccccCCCCccCcccEEEEEEEEEeecC
Confidence 788999999999999999999999999999999976432
Q ss_pred -----------hhchh-----------------hh---------------hhhh---cCCCCCcccchHHhhhhcCCCcc
Q 002276 583 -----------EWGMH-----------------KE---------------QAMA---SGSSRKNSKLTHLLQDSLGGDSK 616 (943)
Q Consensus 583 -----------~~lVD-----------------kE---------------sALa---~~sPyRdSKLTrLLQDSLGGNSK 616 (943)
.++|| +| .++. .++|||+||||+||||+|||||+
T Consensus 98 ~~~~~~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~~~vpyr~SkLT~lL~~~L~g~~~ 177 (186)
T cd01363 98 ASATEQPKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISALAERDSHVPYRESKLTRLLQDSLGGNSR 177 (186)
T ss_pred CCCccceeeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHHHhcCCCCCCCcccHHHHHHHHhcCCCCe
Confidence 23555 11 1222 34799999999999999999999
Q ss_pred eeEEEecCC
Q 002276 617 TLMFVQISP 625 (943)
Q Consensus 617 TlMIv~ISP 625 (943)
|+||+||||
T Consensus 178 t~~i~~vsP 186 (186)
T cd01363 178 TLMVACISP 186 (186)
T ss_pred EEEEEEeCc
Confidence 999999999
No 30
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=98.12 E-value=2.7e-08 Score=118.35 Aligned_cols=225 Identities=20% Similarity=0.191 Sum_probs=142.7
Q ss_pred HHHHHHhHHHHHHHHHhHHHhhcCCEEEEEEeCCCCchhhccCCeeEEeeecc-C--CCeEEEE---eCCcCceeeecce
Q 002276 340 LKIKFIEGTKERKELYNKVLELKGNIRVFCRCRPLNSEETAAGSVMAVDFESV-R--DGELTVI---SNGAPKKTFKFDA 413 (943)
Q Consensus 340 l~~kl~~e~~~RrkLhN~lqELKGNIRV~~RVRPl~~~E~~~g~~~~V~~~s~-~--d~~i~v~---~~g~~~ktF~FD~ 413 (943)
.......+.+++|.||+.|...+ +++|+|+|+|.+...... .....|... . ...+... ........|.||.
T Consensus 283 ~~~ipyReskLTRlLq~sLgG~~-~~~~i~~Isp~~~~~~et--~~tL~~a~rak~I~~~~~~~~~~~~~~~~~~~~~d~ 359 (568)
T COG5059 283 SGHIPYRESKLTRLLQDSLGGNC-NTRVICTISPSSNSFEET--INTLKFASRAKSIKNKIQVNSSSDSSREIEEIKFDL 359 (568)
T ss_pred CCccchhhhHHHHHHHHhcCCCc-cEEEEEEEcCCCCchHHH--HHHHHHHHHHhhcCCcccccCcCcchHHHHHHHhhh
Confidence 33455678899999999999999 999999999987432110 000001000 0 0111111 1122346799999
Q ss_pred eeCCCCCcccccccchhhHHHhhCCcceEEEeeCcccCccccccccCCCCCCccHHhHHHHHHHHHh-hcccceeEEEEE
Q 002276 414 VFGPQADQVDVFQDTAPFANSVLDGYNVCIFAYGQTGTGKTFTMEGTKEARGVNFRTLEELFRIIKE-REKLYRYDISVS 492 (943)
Q Consensus 414 VF~~~asQeeVFeev~pLV~svLdGyNvcIFAYGQTGSGKTyTM~G~~e~~GIIPRal~~LF~~i~~-~~~~~~y~V~VS 492 (943)
+|.+...+..+|.+...++++.++| +++||++++|+++||.-. ..++..-.+..+|..+.. ....|.+...+-
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 433 (568)
T COG5059 360 SEDRSEIEILVFREQSQLSQSSLSG----IFAYMQSLKKETETLKSR--IDLIMKSIISGTFERKKLLKEEGWKYKSTLQ 433 (568)
T ss_pred hhhhhhhhhHHHHHHHhhhhhhhhh----HHHHHhhhhhhhhcccch--hhhhhhhhhhhhhhhhhhhhhhHHHHHHHHH
Confidence 9999999999999999999999999 999999999999999643 456666666888887766 455688888888
Q ss_pred EEEEecchhhhccccCCCCCCCcc---cceEEeCCCCceEcCCceEEEecChHHHHHHHHccccccccccCCCccCCCCc
Q 002276 493 VLEVYNEQIRDLLAVGSQPGAVSK---RLEVRQAGEGMHHVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRS 569 (943)
Q Consensus 493 flEIYNE~I~DLL~~~~~~~~~~k---~LeIred~~g~v~V~gLtev~V~S~eE~~~lL~~G~k~R~~asT~mN~~SSRS 569 (943)
++++|-..+.+++..... ..... ...++.+. +..++ .......+..... .+...+..+++.+|.+++|+
T Consensus 434 ~~~~~~~~~~~~~~e~~~-~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~n~~~~~~ 505 (568)
T COG5059 434 FLRIEIDRLLLLREEELS-KKKTKIHKLNKLRHDL-----SSLLS-SIPEETSDRVESE-KASKLRSSASTKLNLRSSRS 505 (568)
T ss_pred HHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHH-----HHhhh-hcchhhhhhhhhh-hhccchhhcccchhhhhccc
Confidence 888883333333332211 00000 00111110 00111 1111111222222 56788999999999999999
Q ss_pred eeeEEEEEEEEe
Q 002276 570 HCMHCVMVRREL 581 (943)
Q Consensus 570 HsIftI~V~~~~ 581 (943)
|++|+....+.+
T Consensus 506 ~~~~~~~~~~~~ 517 (568)
T COG5059 506 HSKFRDHLNGSN 517 (568)
T ss_pred chhhhhcccchh
Confidence 999987765543
No 31
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.49 E-value=0.15 Score=64.59 Aligned_cols=16 Identities=19% Similarity=0.293 Sum_probs=11.2
Q ss_pred EEecChHHHHHHHHcc
Q 002276 536 AHVNNISEVWEVLQTG 551 (943)
Q Consensus 536 v~V~S~eE~~~lL~~G 551 (943)
+-+.+-.|+..+|..+
T Consensus 600 lLiEdk~Ea~~~m~s~ 615 (1074)
T KOG0250|consen 600 LLIEDKKEAREFMQSD 615 (1074)
T ss_pred EEecchHHHHHHHhcC
Confidence 4566777888888655
No 32
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.68 E-value=0.16 Score=65.20 Aligned_cols=9 Identities=11% Similarity=0.505 Sum_probs=4.7
Q ss_pred hhhhHHHHH
Q 002276 858 KKLSSALRR 866 (943)
Q Consensus 858 ~~~~~~~~~ 866 (943)
+++..+|+.
T Consensus 1115 ~~~~~~l~~ 1123 (1164)
T TIGR02169 1115 ERVAKLIRE 1123 (1164)
T ss_pred HHHHHHHHH
Confidence 455555543
No 33
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=96.65 E-value=0.16 Score=65.14 Aligned_cols=11 Identities=18% Similarity=0.287 Sum_probs=5.6
Q ss_pred EecChHHHHHH
Q 002276 537 HVNNISEVWEV 547 (943)
Q Consensus 537 ~V~S~eE~~~l 547 (943)
.|.+.+.+..+
T Consensus 625 v~~~l~~a~~~ 635 (1164)
T TIGR02169 625 VVEDIEAARRL 635 (1164)
T ss_pred EEcCHHHHHHH
Confidence 44555555554
No 34
>PRK11637 AmiB activator; Provisional
Probab=96.54 E-value=0.34 Score=56.46 Aligned_cols=15 Identities=7% Similarity=0.053 Sum_probs=10.5
Q ss_pred CCCceeeEEEEEEEE
Q 002276 566 SSRSHCMHCVMVRRE 580 (943)
Q Consensus 566 SSRSHsIftI~V~~~ 580 (943)
+...|..|-|...+.
T Consensus 404 ~~~~~l~fei~~~~~ 418 (428)
T PRK11637 404 QGRPSLYFEIRRQGQ 418 (428)
T ss_pred CCCCeEEEEEEECCE
Confidence 456788888876654
No 35
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.46 E-value=0.27 Score=62.75 Aligned_cols=10 Identities=10% Similarity=0.428 Sum_probs=5.7
Q ss_pred chhhhHHHHH
Q 002276 857 SKKLSSALRR 866 (943)
Q Consensus 857 ~~~~~~~~~~ 866 (943)
...|..+|++
T Consensus 1129 ~~~~~~~~~~ 1138 (1179)
T TIGR02168 1129 VERFANLLKE 1138 (1179)
T ss_pred HHHHHHHHHH
Confidence 4556666654
No 36
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.30 E-value=0.4 Score=61.35 Aligned_cols=29 Identities=24% Similarity=0.432 Sum_probs=11.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 209 GDYERLKMSYECQKKELTEAKRTLEELKR 237 (943)
Q Consensus 209 ~e~~kL~~~~e~qk~eL~~~e~~i~eLe~ 237 (943)
.+...+...++.+..++..++..+.+++.
T Consensus 677 ~e~~~l~~~~~~l~~~l~~~~~~~~~~~~ 705 (1179)
T TIGR02168 677 REIEELEEKIEELEEKIAELEKALAELRK 705 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444333333333
No 37
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.25 E-value=0.7 Score=53.59 Aligned_cols=36 Identities=25% Similarity=0.230 Sum_probs=20.8
Q ss_pred cceeeeeecCCCceeeecCCCCCCCCCCCCChhhhc
Q 002276 75 GKSMLGFSLTSPDLVICGGSPEIPKSSYGESPEFSE 110 (943)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (943)
|-|..+-|.++.-|.---.-|+-|++||.|||-..-
T Consensus 22 Gssss~as~adglla~T~s~pssp~gss~dsp~~~~ 57 (502)
T KOG0982|consen 22 GSSSSSASVADGLLAETRSRPSSPGGSSSDSPLIAF 57 (502)
T ss_pred CCccCCCCcccchhhhccCCCCCCCCCCCCCchhhh
Confidence 444444444443333344667888888888885443
No 38
>PRK11637 AmiB activator; Provisional
Probab=96.20 E-value=0.8 Score=53.47 Aligned_cols=17 Identities=6% Similarity=0.032 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002276 223 KELTEAKRTLEELKREN 239 (943)
Q Consensus 223 ~eL~~~e~~i~eLe~en 239 (943)
+++.+++.++..++.++
T Consensus 68 ~~~~~~~~~l~~l~~qi 84 (428)
T PRK11637 68 QQRASLLAQLKKQEEAI 84 (428)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333344433333
No 39
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.17 E-value=0.42 Score=57.37 Aligned_cols=39 Identities=21% Similarity=0.283 Sum_probs=21.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 208 KGDYERLKMSYECQKKELTEAKRTLEELKRENQLKNKEY 246 (943)
Q Consensus 208 ~~e~~kL~~~~e~qk~eL~~~e~~i~eLe~en~~K~~E~ 246 (943)
..+.+.|.++...++++...|+..+..|+++......++
T Consensus 149 qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~ 187 (546)
T PF07888_consen 149 QKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEM 187 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555556666666666666666666554433333
No 40
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=96.16 E-value=0.44 Score=52.43 Aligned_cols=28 Identities=36% Similarity=0.485 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhHHHhhc
Q 002276 335 QLYEHLKIKFIEGTKERKELYNKVLELK 362 (943)
Q Consensus 335 ~~~e~l~~kl~~e~~~RrkLhN~lqELK 362 (943)
..|++|+++|.+|-.+||+|.-++.-|.
T Consensus 162 sk~e~L~ekynkeveerkrle~e~k~lq 189 (307)
T PF10481_consen 162 SKYEELQEKYNKEVEERKRLEAEVKALQ 189 (307)
T ss_pred hhHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 5789999999999999999999998887
No 41
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=96.16 E-value=0.71 Score=45.69 Aligned_cols=71 Identities=18% Similarity=0.183 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHhh
Q 002276 288 LRDLTRRLKIMKMEHINLFEEALAYKKCAAEISEASSTIQSKINHQVQLYEHLKIKFIEGTKERKELYNKVLEL 361 (943)
Q Consensus 288 L~~L~~~l~~~k~e~~~l~~e~~~~~~~~~~i~~~~~~lq~~i~~~~~~~e~l~~kl~~e~~~RrkLhN~lqEL 361 (943)
|..++..+..++.+...+..++...+..+ ......|...-..+...+.++..++.+-....+-||++|..+
T Consensus 61 L~~lr~e~~~~~~~~~~l~~~~~~a~~~l---~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 61 LQQLREELQELQQEINELKAEAESAKAEL---EESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33344444444444444444444333333 222333444444555556666667777778999999999865
No 42
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.11 E-value=0.23 Score=55.66 Aligned_cols=92 Identities=15% Similarity=0.182 Sum_probs=53.8
Q ss_pred hhhccHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 265 MHVGSLAFAIEGQVKEKSRWFSSLRDLTRRLKIMKMEHINLFEEALAYKKCAAEISEASSTIQSKINHQVQLYEHLKIKF 344 (943)
Q Consensus 265 ~~v~sL~~~ie~~~~ek~kl~~~L~~L~~~l~~~k~e~~~l~~e~~~~~~~~~~i~~~~~~lq~~i~~~~~~~e~l~~kl 344 (943)
+++..|..+++...++.......|..|..++..++.....+..+.+.+...+....+....++..+..+.+.|.+...-|
T Consensus 213 ~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL 292 (306)
T PF04849_consen 213 QQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAML 292 (306)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555444445555555555555555556666666777777777777777
Q ss_pred HhHHHHHHHHHh
Q 002276 345 IEGTKERKELYN 356 (943)
Q Consensus 345 ~~e~~~RrkLhN 356 (943)
++.+.+-|.|-+
T Consensus 293 ~EaQEElk~lR~ 304 (306)
T PF04849_consen 293 HEAQEELKTLRK 304 (306)
T ss_pred HHHHHHHHHhhC
Confidence 766666666544
No 43
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=95.98 E-value=1.5 Score=46.31 Aligned_cols=123 Identities=19% Similarity=0.192 Sum_probs=65.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH---HHHHHHHHHHHHHHHHHHHHHHHhhhhhccHHHHHHhhHhhhh
Q 002276 209 GDYERLKMSYECQKKELTEAKRTLEELKR---EN---QLKNKEYQETWKSLQELQNELMRKSMHVGSLAFAIEGQVKEKS 282 (943)
Q Consensus 209 ~e~~kL~~~~e~qk~eL~~~e~~i~eLe~---en---~~K~~E~~e~~~~l~~~q~el~~~~~~v~sL~~~ie~~~~ek~ 282 (943)
+-+.+|..+++.+++++..+++.++.-++ |+ +.-..++++...++......++++ ..+|...|+....++.
T Consensus 36 e~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE---~q~L~~~i~~Lqeen~ 112 (193)
T PF14662_consen 36 EGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKE---QQSLVAEIETLQEENG 112 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHh
Confidence 33444444455555554444444333311 11 111222333333333333334333 4556667777777777
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 283 RWFSSLRDLTRRLKIMKMEHINLFEEALAYKKCAAEISEASSTIQSKINHQV 334 (943)
Q Consensus 283 kl~~~L~~L~~~l~~~k~e~~~l~~e~~~~~~~~~~i~~~~~~lq~~i~~~~ 334 (943)
++....+.++.+++.+-.+...|..++..|...+........+--..+..+.
T Consensus 113 kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~ 164 (193)
T PF14662_consen 113 KLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELK 164 (193)
T ss_pred HHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 7888888888888888777788877777776666555544443333333333
No 44
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.97 E-value=0.74 Score=56.57 Aligned_cols=35 Identities=14% Similarity=0.054 Sum_probs=16.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCcccchhhcccccccc
Q 002276 809 LPSAPTSAPLTPALLPLPPCEVDEKEEIDECLTEQ 843 (943)
Q Consensus 809 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 843 (943)
-.+..+.+||+..+.+.-++..-+-.+-.-..|+|
T Consensus 961 ~~q~gs~Tp~k~g~~~kkpeiAqVia~yvAs~peQ 995 (1118)
T KOG1029|consen 961 KDQEGSGTPPKQGPTPKKPEIAQVIADYVASGPEQ 995 (1118)
T ss_pred hhccCCCCCCCCCCCCCCchhhhhhhhhhccCchh
Confidence 33445666665555554445433333333355555
No 45
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.94 E-value=0.53 Score=60.11 Aligned_cols=21 Identities=19% Similarity=0.232 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002276 241 LKNKEYQETWKSLQELQNELM 261 (943)
Q Consensus 241 ~K~~E~~e~~~~l~~~q~el~ 261 (943)
....+|+..|..|....+.+.
T Consensus 440 ~~i~~~~~ei~~L~~~~~~~~ 460 (1293)
T KOG0996|consen 440 IEIQKCQTEIEQLEELLEKEE 460 (1293)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666655444333
No 46
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.92 E-value=1.2 Score=50.26 Aligned_cols=82 Identities=17% Similarity=0.143 Sum_probs=50.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHhh
Q 002276 282 SRWFSSLRDLTRRLKIMKMEHINLFEEALAYKKCAAEISEASSTIQSKINHQVQLYEHLKIKFIEGTKERKELYNKVLEL 361 (943)
Q Consensus 282 ~kl~~~L~~L~~~l~~~k~e~~~l~~e~~~~~~~~~~i~~~~~~lq~~i~~~~~~~e~l~~kl~~e~~~RrkLhN~lqEL 361 (943)
..+...|..+..++..++.+...+..+...+...+.++.+...+++..|+++....+..+.--..|-..-+.-++.|+.+
T Consensus 212 ~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~~Le~~ 291 (325)
T PF08317_consen 212 EALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVDALEKL 291 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 34666666666777777766666766666666666666666666666666555444433222233445556666677777
Q ss_pred cC
Q 002276 362 KG 363 (943)
Q Consensus 362 KG 363 (943)
.|
T Consensus 292 ~g 293 (325)
T PF08317_consen 292 TG 293 (325)
T ss_pred HC
Confidence 76
No 47
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=95.87 E-value=1.1 Score=54.03 Aligned_cols=26 Identities=46% Similarity=0.635 Sum_probs=15.0
Q ss_pred cchhhcCCcccccCCCCCCCCCccccccccc
Q 002276 763 SPIEKENNPEMTEQPRLPNRTGRASLCTAVR 793 (943)
Q Consensus 763 ~~~eken~p~~~~~~~~p~~~~~~s~~~~~~ 793 (943)
+..|-| +|.. .. |++-|--|+|.-+.
T Consensus 485 s~s~de-~p~~-~~---~~~l~~~~l~~~~~ 510 (546)
T PF07888_consen 485 SDSEDE-SPED-EQ---PQPLGHYSLCEQGQ 510 (546)
T ss_pred CCcccC-Cccc-cc---cCCCCCcCcccCCC
Confidence 455656 5652 22 56667778885443
No 48
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=95.65 E-value=0.69 Score=52.04 Aligned_cols=130 Identities=18% Similarity=0.227 Sum_probs=70.4
Q ss_pred cCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccHHHHHHhhHhhhhhH
Q 002276 205 RGVKGDYERLKMSYECQKKELTEAKRTLEELKRENQLKNKEYQETWKSLQELQNELMRKSMHVGSLAFAIEGQVKEKSRW 284 (943)
Q Consensus 205 ~~~~~e~~kL~~~~e~qk~eL~~~e~~i~eLe~en~~K~~E~~e~~~~l~~~q~el~~~~~~v~sL~~~ie~~~~ek~kl 284 (943)
..+++|+..|+++...++.+-..++.+=..|...| .+++.++-..+..+.++|.++..+....+ ++...+
T Consensus 170 k~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dc---v~QL~~An~qia~LseELa~k~Ee~~rQQ-------EEIt~L 239 (306)
T PF04849_consen 170 KSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDC---VKQLSEANQQIASLSEELARKTEENRRQQ-------EEITSL 239 (306)
T ss_pred HHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHH---HHHhhhcchhHHHHHHHHHHHHHHHHHHH-------HHHHHH
Confidence 34555666666666666665555555544444443 23344455566667777777654433333 333445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 285 FSSLRDLTRRLKIMKMEHINLFEEALAYKKCAAEISEASSTIQSKINHQVQLYEHLKIKF 344 (943)
Q Consensus 285 ~~~L~~L~~~l~~~k~e~~~l~~e~~~~~~~~~~i~~~~~~lq~~i~~~~~~~e~l~~kl 344 (943)
.+.|-+|+.+.+..-.|...|...+.+.+.....+......++.+..+....+.+..+.+
T Consensus 240 lsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEEl 299 (306)
T PF04849_consen 240 LSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEEL 299 (306)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555556666666665565566555555555555555555555555555444444444443
No 49
>PRK09039 hypothetical protein; Validated
Probab=95.64 E-value=1.3 Score=50.65 Aligned_cols=17 Identities=24% Similarity=0.624 Sum_probs=9.7
Q ss_pred HHHHHHHHhHHHhhcCC
Q 002276 348 TKERKELYNKVLELKGN 364 (943)
Q Consensus 348 ~~~RrkLhN~lqELKGN 364 (943)
...|..++..|.++-|+
T Consensus 193 ~~~~~~~~~~l~~~~~~ 209 (343)
T PRK09039 193 NRYRSEFFGRLREILGD 209 (343)
T ss_pred HHhHHHHHHHHHHHhCC
Confidence 45566666666655543
No 50
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=95.61 E-value=0.99 Score=61.16 Aligned_cols=38 Identities=24% Similarity=0.356 Sum_probs=26.3
Q ss_pred eeeeecCCCceeeecCCCCCCCCCCCCChhhhccccce
Q 002276 78 MLGFSLTSPDLVICGGSPEIPKSSYGESPEFSERIQCS 115 (943)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (943)
|.-+-.|.|-.|-|.-.-+..+.+--|.|=.+..-.|.
T Consensus 651 m~~l~~T~phFvRCiIPn~~K~~g~ld~~lvl~QLrcn 688 (1930)
T KOG0161|consen 651 MTTLRSTHPHFVRCIIPNEEKKPGKLDAPLVLNQLRCN 688 (1930)
T ss_pred HHHhccCCCceeEEeccCccccccccCHHHHHHHhhcc
Confidence 44556799999999776666666666666666655553
No 51
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=95.58 E-value=1.1 Score=55.78 Aligned_cols=27 Identities=19% Similarity=0.167 Sum_probs=14.2
Q ss_pred HHHHHHhHHHHHHHHHhHHHhhcCCEE
Q 002276 340 LKIKFIEGTKERKELYNKVLELKGNIR 366 (943)
Q Consensus 340 l~~kl~~e~~~RrkLhN~lqELKGNIR 366 (943)
.+.++...+...++=.-+|.|||..|-
T Consensus 627 akrq~ei~~~~~~~~d~ei~~lk~ki~ 653 (697)
T PF09726_consen 627 AKRQLEIAQGQLRKKDKEIEELKAKIA 653 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444445555556666666543
No 52
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=95.53 E-value=1.1 Score=58.79 Aligned_cols=36 Identities=8% Similarity=0.125 Sum_probs=22.4
Q ss_pred cCCcccccccchhhhHHHHHHHHhhhh-----cCChhhhhhhc
Q 002276 847 CNSPKVIKSESKKLSSALRRSLQKKMQ-----RKSPMQQHFRR 884 (943)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 884 (943)
+++|-.. .+.+|+..+|+..- +.-| .+++|+.++-+
T Consensus 1097 VDAaLD~-~Nv~r~~~~i~e~s-~~sQFIvIThr~~~m~~ad~ 1137 (1163)
T COG1196 1097 VDAALDD-ANVERVARLIKEMS-KETQFIVITHRKGTMEAADR 1137 (1163)
T ss_pred chhhccH-HHHHHHHHHHHHhC-cCCeEEEEEcChHHHHHHHH
Confidence 4455433 47899999999887 4433 35666654433
No 53
>PRK09039 hypothetical protein; Validated
Probab=95.30 E-value=2.9 Score=47.85 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002276 214 LKMSYECQKKELTEAKRTLEELK 236 (943)
Q Consensus 214 L~~~~e~qk~eL~~~e~~i~eLe 236 (943)
|..++..+.++|..++.+|.+|-
T Consensus 44 Ls~~i~~~~~eL~~L~~qIa~L~ 66 (343)
T PRK09039 44 LSREISGKDSALDRLNSQIAELA 66 (343)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHH
Confidence 44555566666666666665554
No 54
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=95.28 E-value=0.89 Score=53.78 Aligned_cols=37 Identities=16% Similarity=0.133 Sum_probs=21.4
Q ss_pred CCCccHHhHHHHHHHHHhhcccceeEEEEEEEEEecchh
Q 002276 463 ARGVNFRTLEELFRIIKEREKLYRYDISVSVLEVYNEQI 501 (943)
Q Consensus 463 ~~GIIPRal~~LF~~i~~~~~~~~y~V~VSflEIYNE~I 501 (943)
+.-.||-+++.||...+.... -..+.++..++|...+
T Consensus 355 eq~~I~e~ve~i~~ts~q~a~--l~~~l~i~~~ny~~~~ 391 (596)
T KOG4360|consen 355 EQKRIFETVEQINETSQQMAE--LPEVLVIPGSNYSSQQ 391 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHh--ccccccCCcchhhhhh
Confidence 345677888888877665432 1234455555554443
No 55
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.25 E-value=2 Score=52.67 Aligned_cols=32 Identities=25% Similarity=0.331 Sum_probs=18.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 209 GDYERLKMSYECQKKELTEAKRTLEELKRENQ 240 (943)
Q Consensus 209 ~e~~kL~~~~e~qk~eL~~~e~~i~eLe~en~ 240 (943)
++...-.++++.++++++.+...+++++.+++
T Consensus 321 ~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~ 352 (594)
T PF05667_consen 321 DEQEEQEQELEELQEQLDELESQIEELEAEIK 352 (594)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555556666666666555555555553
No 56
>PRK02224 chromosome segregation protein; Provisional
Probab=95.22 E-value=1.3 Score=55.95 Aligned_cols=57 Identities=14% Similarity=0.189 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHhhcCCEE
Q 002276 310 LAYKKCAAEISEASSTIQSKINHQVQLYEHLKIKFIEGTKERKELYNKVLELKGNIR 366 (943)
Q Consensus 310 ~~~~~~~~~i~~~~~~lq~~i~~~~~~~e~l~~kl~~e~~~RrkLhN~lqELKGNIR 366 (943)
..+...+.++......++..+..+...+..+...+...+.....|.+++.+++..+.
T Consensus 345 e~~~~~~~~le~~~~~l~~~~~~l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~ 401 (880)
T PRK02224 345 ESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFG 401 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444455555555556666656666666677777777777777777777766553
No 57
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.21 E-value=1.4 Score=55.70 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=13.9
Q ss_pred HHHHhHHHHHHHHHhHHHhhcC
Q 002276 342 IKFIEGTKERKELYNKVLELKG 363 (943)
Q Consensus 342 ~kl~~e~~~RrkLhN~lqELKG 363 (943)
.+....+..|++|.|++.-+..
T Consensus 899 ~e~~~~~l~~kkle~e~~~~~~ 920 (1174)
T KOG0933|consen 899 SEKSDGELERKKLEHEVTKLES 920 (1174)
T ss_pred HHhhcccchHHHHHhHHHHhhh
Confidence 3344455678888887776654
No 58
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.17 E-value=1.1 Score=53.47 Aligned_cols=44 Identities=14% Similarity=0.260 Sum_probs=22.7
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 206 GVKGDYERLKMSYECQKKELTEAKRTLEELKRENQLKNKEYQET 249 (943)
Q Consensus 206 ~~~~e~~kL~~~~e~qk~eL~~~e~~i~eLe~en~~K~~E~~e~ 249 (943)
+++.+++.+...++.+..++..++..+.+++........++++.
T Consensus 178 e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e 221 (562)
T PHA02562 178 ELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNK 221 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555444444444433
No 59
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=95.15 E-value=1.6 Score=55.65 Aligned_cols=56 Identities=27% Similarity=0.200 Sum_probs=28.4
Q ss_pred CcchhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 002276 206 GVKGDYERLKMSYECQKKELT-----EAKRTLEELKREN---QLKNKEYQETWKSLQELQNELM 261 (943)
Q Consensus 206 ~~~~e~~kL~~~~e~qk~eL~-----~~e~~i~eLe~en---~~K~~E~~e~~~~l~~~q~el~ 261 (943)
...+..+.+....++++.++. ...+++++++.++ +.|..+|++........+.++.
T Consensus 252 ~~~~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~~ki~~~~~k~~~~r 315 (1074)
T KOG0250|consen 252 DNLEQLEDLKENLEQLKAKMAWAWVNEVERQLNNQEEEIKKKQEKVDTLQEKIEEKQGKIEEAR 315 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555666666666665432 3355555555554 4445555555444444444433
No 60
>PRK03918 chromosome segregation protein; Provisional
Probab=95.07 E-value=2.2 Score=53.85 Aligned_cols=12 Identities=33% Similarity=0.512 Sum_probs=6.6
Q ss_pred chhhhHHHHHHH
Q 002276 857 SKKLSSALRRSL 868 (943)
Q Consensus 857 ~~~~~~~~~~~~ 868 (943)
-..|..+|++-.
T Consensus 830 ~~~l~~~l~~~~ 841 (880)
T PRK03918 830 RRKLVDIMERYL 841 (880)
T ss_pred HHHHHHHHHHHH
Confidence 355666666543
No 61
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=94.98 E-value=1.8 Score=54.28 Aligned_cols=37 Identities=27% Similarity=0.331 Sum_probs=27.8
Q ss_pred ccCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 204 ERGVK-GDYERLKMSYECQKKELTEAKRTLEELKRENQ 240 (943)
Q Consensus 204 ~~~~~-~e~~kL~~~~e~qk~eL~~~e~~i~eLe~en~ 240 (943)
|+|++ |+.+-|+.+++.+++-+++|+-.++-|+.|++
T Consensus 319 dKEmAEERaesLQ~eve~lkEr~deletdlEILKaEme 356 (1243)
T KOG0971|consen 319 DKEMAEERAESLQQEVEALKERVDELETDLEILKAEME 356 (1243)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45554 44577888888888888888888888888873
No 62
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=94.97 E-value=2.1 Score=48.53 Aligned_cols=83 Identities=17% Similarity=0.155 Sum_probs=49.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHh
Q 002276 281 KSRWFSSLRDLTRRLKIMKMEHINLFEEALAYKKCAAEISEASSTIQSKINHQVQLYEHLKIKFIEGTKERKELYNKVLE 360 (943)
Q Consensus 281 k~kl~~~L~~L~~~l~~~k~e~~~l~~e~~~~~~~~~~i~~~~~~lq~~i~~~~~~~e~l~~kl~~e~~~RrkLhN~lqE 360 (943)
..++..+|..+..++..++.+...+..++..+...+.+..+...+++..|.+++...++.+.=-..|...-+.-++.|+.
T Consensus 206 L~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~ 285 (312)
T smart00787 206 LDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQS 285 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 34455666666666666666666666666666666666666666666666655554443332223445555666677777
Q ss_pred hcC
Q 002276 361 LKG 363 (943)
Q Consensus 361 LKG 363 (943)
+.|
T Consensus 286 l~g 288 (312)
T smart00787 286 LTG 288 (312)
T ss_pred HhC
Confidence 777
No 63
>PRK02224 chromosome segregation protein; Provisional
Probab=94.96 E-value=2 Score=54.37 Aligned_cols=38 Identities=16% Similarity=0.058 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHhhcCCE
Q 002276 328 SKINHQVQLYEHLKIKFIEGTKERKELYNKVLELKGNI 365 (943)
Q Consensus 328 ~~i~~~~~~~e~l~~kl~~e~~~RrkLhN~lqELKGNI 365 (943)
..+..+...+.++...+.+-+..|..+.++|.+++..|
T Consensus 599 ~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i 636 (880)
T PRK02224 599 AAIADAEDEIERLREKREALAELNDERRERLAEKRERK 636 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444434444445555555555544
No 64
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=94.90 E-value=2.3 Score=55.81 Aligned_cols=39 Identities=10% Similarity=0.326 Sum_probs=23.8
Q ss_pred ccchHHhhhhcCCCcceeEEEecCCCCcChHhhHHHHHHHhHhhcccccc
Q 002276 601 SKLTHLLQDSLGGDSKTLMFVQISPNENDLSETLCSLNFASRVRGIELGA 650 (943)
Q Consensus 601 SKLTrLLQDSLGGNSKTlMIv~ISPs~~~~~ETLsTLrFAsRak~Ik~~~ 650 (943)
+.+..+|+... +++..++|- |- -.|+.+|.+.-+|....
T Consensus 1107 ~r~~~~i~e~s-~~sQFIvIT---hr-------~~~m~~ad~l~GVtm~~ 1145 (1163)
T COG1196 1107 ERVARLIKEMS-KETQFIVIT---HR-------KGTMEAADRLVGVTMQE 1145 (1163)
T ss_pred HHHHHHHHHhC-cCCeEEEEE---cC-------hHHHHHHHHHeeeEeec
Confidence 56677777766 555555443 22 23667788877776543
No 65
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=94.77 E-value=6 Score=42.00 Aligned_cols=47 Identities=19% Similarity=0.270 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 284 WFSSLRDLTRRLKIMKMEHINLFEEALAYKKCAAEISEASSTIQSKI 330 (943)
Q Consensus 284 l~~~L~~L~~~l~~~k~e~~~l~~e~~~~~~~~~~i~~~~~~lq~~i 330 (943)
+....+.|..++..++.+...+..+...+++...++......++.++
T Consensus 93 lEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql 139 (193)
T PF14662_consen 93 LEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQL 139 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHH
Confidence 33344444444444444444444444444444444444444444433
No 66
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=94.37 E-value=2.9 Score=53.08 Aligned_cols=57 Identities=14% Similarity=0.136 Sum_probs=29.5
Q ss_pred ccHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 268 GSLAFAIEGQVKEKSRWFSSLRDLTRRLKIMKMEHINLFEEALAYKKCAAEISEASS 324 (943)
Q Consensus 268 ~sL~~~ie~~~~ek~kl~~~L~~L~~~l~~~k~e~~~l~~e~~~~~~~~~~i~~~~~ 324 (943)
..+...+..-..+..+|.+....++++++.+...+..+...+..+...+..+++...
T Consensus 491 knlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa 547 (1195)
T KOG4643|consen 491 KNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENA 547 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 334444444444455566666666666666655555555555544444444444333
No 67
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=94.34 E-value=4.8 Score=50.59 Aligned_cols=49 Identities=12% Similarity=0.161 Sum_probs=30.2
Q ss_pred HHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 273 AIEGQVKEKSRWFSSLRDLTRRLKIMKMEHINLFEEALAYKKCAAEISE 321 (943)
Q Consensus 273 ~ie~~~~ek~kl~~~L~~L~~~l~~~k~e~~~l~~e~~~~~~~~~~i~~ 321 (943)
.+++..+...+|..+.+.....++.++.|+..+..++..++..+....+
T Consensus 474 ~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~~~q 522 (980)
T KOG0980|consen 474 QLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSNLAQ 522 (980)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3333334444566677777777777777777777777766665544444
No 68
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=94.33 E-value=4.4 Score=41.04 Aligned_cols=20 Identities=30% Similarity=0.350 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002276 289 RDLTRRLKIMKMEHINLFEE 308 (943)
Q Consensus 289 ~~L~~~l~~~k~e~~~l~~e 308 (943)
+.|...+..+..+...|...
T Consensus 69 ~~L~~EL~~l~sEk~~L~k~ 88 (140)
T PF10473_consen 69 NQLELELDTLRSEKENLDKE 88 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 69
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=94.31 E-value=5.8 Score=42.45 Aligned_cols=97 Identities=18% Similarity=0.207 Sum_probs=57.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccHHHHHHhhHhhhhhHHHH
Q 002276 208 KGDYERLKMSYECQKKELTEAKRTLEELKRENQLKNKEYQETWKSLQELQNELMRKSMHVGSLAFAIEGQVKEKSRWFSS 287 (943)
Q Consensus 208 ~~e~~kL~~~~e~qk~eL~~~e~~i~eLe~en~~K~~E~~e~~~~l~~~q~el~~~~~~v~sL~~~ie~~~~ek~kl~~~ 287 (943)
.+|+.-|++-...-+.|++.--..|..|+..+..-..+.+..-..+..++..+..+..++...++++.....+..-+..+
T Consensus 9 ~GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrek 88 (202)
T PF06818_consen 9 SGEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREK 88 (202)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhh
Confidence 46677777666666666666666666666666555555555545555555555555555555555555555555556666
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002276 288 LRDLTRRLKIMKMEHIN 304 (943)
Q Consensus 288 L~~L~~~l~~~k~e~~~ 304 (943)
+..|...+..++.+...
T Consensus 89 l~~le~El~~Lr~~l~~ 105 (202)
T PF06818_consen 89 LGQLEAELAELREELAC 105 (202)
T ss_pred hhhhHHHHHHHHHHHHh
Confidence 66666666666555444
No 70
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=94.30 E-value=5.9 Score=52.41 Aligned_cols=78 Identities=14% Similarity=0.203 Sum_probs=43.0
Q ss_pred cccccCCccccc--ccCCCCCCCC-CCCCCeeeecCCcchhhhHhhhhccccccccccccc--CccCcchhHHHHHHHHH
Q 002276 145 SFNKEFSPESSL--ELLPPSTMPE-QDPVPVVSINEDYREPMLLEAKRFSQLEECESTKDS--GERGVKGDYERLKMSYE 219 (943)
Q Consensus 145 ~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~kL~~~~e 219 (943)
|.+|-+.||-=+ .|-|...... .|..-||+||-+.+.. .+| .+.+++++.+.+...+.
T Consensus 555 tIGKVid~eLL~r~dL~P~l~~~~~~dslyGl~LdL~~I~~-----------------pd~~~~ee~L~~~l~~~~~~l~ 617 (1201)
T PF12128_consen 555 TIGKVIDEELLYRTDLEPQLVEDSGSDSLYGLSLDLSAIDV-----------------PDYAASEEELRERLEQAEDQLQ 617 (1201)
T ss_pred HhHhhCCHHHhcCCCCCCeecCCCcccccceeEeehhhcCC-----------------chhhcChHHHHHHHHHHHHHHH
Confidence 667788887211 2345555454 5788899998876421 121 22355566665555555
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002276 220 CQKKELTEAKRTLEELKREN 239 (943)
Q Consensus 220 ~qk~eL~~~e~~i~eLe~en 239 (943)
.+.++..++++.+.......
T Consensus 618 ~~~~~~~~~e~~l~~~~~~~ 637 (1201)
T PF12128_consen 618 SAEERQEELEKQLKQINKKI 637 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555555444444443333
No 71
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=94.27 E-value=3.4 Score=56.31 Aligned_cols=58 Identities=16% Similarity=0.123 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHhhc
Q 002276 305 LFEEALAYKKCAAEISEASSTIQSKINHQVQLYEHLKIKFIEGTKERKELYNKVLELK 362 (943)
Q Consensus 305 l~~e~~~~~~~~~~i~~~~~~lq~~i~~~~~~~e~l~~kl~~e~~~RrkLhN~lqELK 362 (943)
+...+......++.+......+++.+.++.....++...+++-+..+|.+..++.||+
T Consensus 1475 l~~~lee~~e~~e~l~renk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ 1532 (1930)
T KOG0161|consen 1475 LKNALEELLEQLEELRRENKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQ 1532 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444455556666666666666666666666666776666655554
No 72
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.26 E-value=2.2 Score=54.79 Aligned_cols=82 Identities=24% Similarity=0.258 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 002276 283 RWFSSLRDLTRRLKIMKMEHINLFEEALAYKKCAAEIS-------EASSTIQSKINHQVQLYEHLKIKFIEGTKERKELY 355 (943)
Q Consensus 283 kl~~~L~~L~~~l~~~k~e~~~l~~e~~~~~~~~~~i~-------~~~~~lq~~i~~~~~~~e~l~~kl~~e~~~RrkLh 355 (943)
+....|..|..+++.++.+...|.+++..+.....++. +...++++.+......++.++..+.+-...|-.+.
T Consensus 939 k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~k~~~~~~k~~~e~i~k~~~~lk~~rId~~ 1018 (1293)
T KOG0996|consen 939 KAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYKEAEESLKEIKKELRDLKSELENIKKSENELKAERIDIE 1018 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHH
Confidence 34455556666666666655555555554443333322 23334444455555556666666665566666788
Q ss_pred hHHHhhcCC
Q 002276 356 NKVLELKGN 364 (943)
Q Consensus 356 N~lqELKGN 364 (943)
|.+++.+|-
T Consensus 1019 ~K~e~~~~~ 1027 (1293)
T KOG0996|consen 1019 NKLEAINGE 1027 (1293)
T ss_pred HHHHHHHHH
Confidence 888877763
No 73
>PRK04863 mukB cell division protein MukB; Provisional
Probab=94.25 E-value=4.2 Score=54.66 Aligned_cols=43 Identities=14% Similarity=0.124 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhH---HHhhcCC
Q 002276 322 ASSTIQSKINHQVQLYEHLKIKFIEGTKERKELYNK---VLELKGN 364 (943)
Q Consensus 322 ~~~~lq~~i~~~~~~~e~l~~kl~~e~~~RrkLhN~---lqELKGN 364 (943)
+.....+++.+....+.+++.++...+.....+.+. +.-..|.
T Consensus 443 ~LenF~aklee~e~qL~elE~kL~~lea~leql~~~~~~l~~~~Gk 488 (1486)
T PRK04863 443 WLEEFQAKEQEATEELLSLEQKLSVAQAAHSQFEQAYQLVRKIAGE 488 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 333455666666666677777776666555555444 4445564
No 74
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=94.23 E-value=3.9 Score=51.37 Aligned_cols=26 Identities=15% Similarity=0.253 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 284 WFSSLRDLTRRLKIMKMEHINLFEEA 309 (943)
Q Consensus 284 l~~~L~~L~~~l~~~k~e~~~l~~e~ 309 (943)
|....+.++.++..+..+|..|++..
T Consensus 422 ~e~ry~klkek~t~l~~~h~~lL~K~ 447 (980)
T KOG0980|consen 422 AENRYEKLKEKYTELRQEHADLLRKY 447 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555554443
No 75
>PRK03918 chromosome segregation protein; Provisional
Probab=94.20 E-value=3.2 Score=52.35 Aligned_cols=18 Identities=11% Similarity=0.115 Sum_probs=9.9
Q ss_pred CCCccHHhHHHHHHHHHh
Q 002276 463 ARGVNFRTLEELFRIIKE 480 (943)
Q Consensus 463 ~~GIIPRal~~LF~~i~~ 480 (943)
..|+=+.....|+..+..
T Consensus 822 ~~~lD~~~~~~l~~~l~~ 839 (880)
T PRK03918 822 TPFLDEERRRKLVDIMER 839 (880)
T ss_pred CcccCHHHHHHHHHHHHH
Confidence 445556555555555544
No 76
>PHA02562 46 endonuclease subunit; Provisional
Probab=94.18 E-value=4 Score=48.76 Aligned_cols=15 Identities=13% Similarity=0.317 Sum_probs=7.4
Q ss_pred ccHHhHHHHHHHHHh
Q 002276 466 VNFRTLEELFRIIKE 480 (943)
Q Consensus 466 IIPRal~~LF~~i~~ 480 (943)
+=+.....++..+..
T Consensus 510 ld~~~~~~~~~~l~~ 524 (562)
T PHA02562 510 LDAEGTKALLSILDS 524 (562)
T ss_pred cchhHHHHHHHHHHh
Confidence 444455555554444
No 77
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=93.88 E-value=6.2 Score=47.79 Aligned_cols=52 Identities=12% Similarity=0.132 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHhhcCCEE
Q 002276 315 CAAEISEASSTIQSKINHQVQLYEHLKIKFIEGTKERKELYNKVLELKGNIR 366 (943)
Q Consensus 315 ~~~~i~~~~~~lq~~i~~~~~~~e~l~~kl~~e~~~RrkLhN~lqELKGNIR 366 (943)
....+.+....|......+...+..++..+.+|...|..++|++|+|.-.|.
T Consensus 163 r~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~ 214 (546)
T KOG0977|consen 163 RIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELA 214 (546)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3344444445555666666677778888889999999999999999987543
No 78
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.79 E-value=1.5 Score=54.06 Aligned_cols=57 Identities=18% Similarity=0.210 Sum_probs=29.9
Q ss_pred hhHhhhhcccccccccccccCccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 183 MLLEAKRFSQLEECESTKDSGERGVKGDYERLKMSYECQKKELTEAKRTLEELKREN 239 (943)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~kL~~~~e~qk~eL~~~e~~i~eLe~en 239 (943)
.+|+-+|..|..--+.+-..+...+.++....+-.+..++.+++.+.+.++-...++
T Consensus 432 iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei 488 (1118)
T KOG1029|consen 432 IVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEI 488 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHH
Confidence 344444444444444444555555555555555555555556655555555544444
No 79
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=93.76 E-value=6.6 Score=50.11 Aligned_cols=14 Identities=21% Similarity=0.204 Sum_probs=7.5
Q ss_pred CCCCCCCChhhhcc
Q 002276 98 PKSSYGESPEFSER 111 (943)
Q Consensus 98 ~~~~~~~~~~~~~~ 111 (943)
-..+|.-||+....
T Consensus 579 KI~s~~~s~~v~~~ 592 (1174)
T KOG0933|consen 579 KIQSFVLSPNVLQA 592 (1174)
T ss_pred hhhhccCCHhHHHH
Confidence 34455666665553
No 80
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=93.74 E-value=8 Score=42.44 Aligned_cols=109 Identities=17% Similarity=0.212 Sum_probs=49.2
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhhhccHHHHHHhhHhhhhh
Q 002276 206 GVKGDYERLKMSYECQKKELTEAKRTLEELKRENQLKNKEYQETWKSLQELQNELMR--KSMHVGSLAFAIEGQVKEKSR 283 (943)
Q Consensus 206 ~~~~e~~kL~~~~e~qk~eL~~~e~~i~eLe~en~~K~~E~~e~~~~l~~~q~el~~--~~~~v~sL~~~ie~~~~ek~k 283 (943)
.......+++.+++...+.+.+++..+++++.+...-..++++.-..+...+..+.. ...+...|..++....+....
T Consensus 28 ~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~ 107 (239)
T COG1579 28 EIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINS 107 (239)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666666666666666665544333444333333333333211 112233343344333333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 284 WFSSLRDLTRRLKIMKMEHINLFEEALAYKK 314 (943)
Q Consensus 284 l~~~L~~L~~~l~~~k~e~~~l~~e~~~~~~ 314 (943)
+...|.+|...++.++.+...+.........
T Consensus 108 le~el~~l~~~~~~l~~~i~~l~~~~~~~e~ 138 (239)
T COG1579 108 LEDELAELMEEIEKLEKEIEDLKERLERLEK 138 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444443333333333333
No 81
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=93.74 E-value=2.7 Score=43.49 Aligned_cols=26 Identities=19% Similarity=0.390 Sum_probs=10.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 210 DYERLKMSYECQKKELTEAKRTLEEL 235 (943)
Q Consensus 210 e~~kL~~~~e~qk~eL~~~e~~i~eL 235 (943)
+.....+....+.+++..+++.+.++
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~ 107 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQEL 107 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444433333333
No 82
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=93.73 E-value=8.3 Score=45.36 Aligned_cols=33 Identities=15% Similarity=0.258 Sum_probs=18.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 207 VKGDYERLKMSYECQKKELTEAKRTLEELKREN 239 (943)
Q Consensus 207 ~~~e~~kL~~~~e~qk~eL~~~e~~i~eLe~en 239 (943)
+..+++++.+++..++++...++..|.++++++
T Consensus 43 ~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i 75 (420)
T COG4942 43 IQKEIAALEKKIREQQDQRAKLEKQLKSLETEI 75 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555555
No 83
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=93.70 E-value=13 Score=40.82 Aligned_cols=97 Identities=18% Similarity=0.174 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccHHHHHH--hhHhhhhhHHHHHHHHHHHHHH
Q 002276 220 CQKKELTEAKRTLEELKRENQLKNKEYQETWKSLQELQNELMRKSMHVGSLAFAIE--GQVKEKSRWFSSLRDLTRRLKI 297 (943)
Q Consensus 220 ~qk~eL~~~e~~i~eLe~en~~K~~E~~e~~~~l~~~q~el~~~~~~v~sL~~~ie--~~~~ek~kl~~~L~~L~~~l~~ 297 (943)
..++.|..++..++.+......+..++++.-.....++.++..-..++...+..+. ...++...|...++.+++++..
T Consensus 28 ~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~ 107 (239)
T COG1579 28 EIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINS 107 (239)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444444444444333333333333221 1122233344555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002276 298 MKMEHINLFEEALAYKKCA 316 (943)
Q Consensus 298 ~k~e~~~l~~e~~~~~~~~ 316 (943)
+..+...+..+...+.+.+
T Consensus 108 le~el~~l~~~~~~l~~~i 126 (239)
T COG1579 108 LEDELAELMEEIEKLEKEI 126 (239)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5554444444444444333
No 84
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=93.68 E-value=8.4 Score=43.36 Aligned_cols=111 Identities=16% Similarity=0.243 Sum_probs=79.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccHHHHHHhhHhhhhhHHH
Q 002276 207 VKGDYERLKMSYECQKKELTEAKRTLEELKRENQLKNKEYQETWKSLQELQNELMRKSMHVGSLAFAIEGQVKEKSRWFS 286 (943)
Q Consensus 207 ~~~e~~kL~~~~e~qk~eL~~~e~~i~eLe~en~~K~~E~~e~~~~l~~~q~el~~~~~~v~sL~~~ie~~~~ek~kl~~ 286 (943)
+..+...|+...+.+..+|..++.+++.|+.+.|.-..-+.+....+...|.+|.+..-++..++.-.........+.-.
T Consensus 135 mn~d~S~lkd~ne~LsQqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~ 214 (305)
T PF14915_consen 135 MNSDVSNLKDNNEILSQQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIG 214 (305)
T ss_pred hcchHHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 34456677777899999999999999999999998888888888888888888887755544443322221111223344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 287 SLRDLTRRLKIMKMEHINLFEEALAYKKCAA 317 (943)
Q Consensus 287 ~L~~L~~~l~~~k~e~~~l~~e~~~~~~~~~ 317 (943)
+=..+++++..++.+...|.+++....+...
T Consensus 215 Kqes~eERL~QlqsEN~LLrQQLddA~~K~~ 245 (305)
T PF14915_consen 215 KQESLEERLSQLQSENMLLRQQLDDAHNKAD 245 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456778888888888888888886655443
No 85
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=93.63 E-value=9.1 Score=38.74 Aligned_cols=117 Identities=18% Similarity=0.217 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccHHHHHHhhHhhhhhHHHHHHHHH
Q 002276 213 RLKMSYECQKKELTEAKRTLEELKRENQLKNKEYQETWKSLQELQNELMRKSMHVGSLAFAIEGQVKEKSRWFSSLRDLT 292 (943)
Q Consensus 213 kL~~~~e~qk~eL~~~e~~i~eLe~en~~K~~E~~e~~~~l~~~q~el~~~~~~v~sL~~~ie~~~~ek~kl~~~L~~L~ 292 (943)
.|+.+.+....-...++.++..++.++..+-.++......+..+..++.+-...+...+.. ..+..+.......|.
T Consensus 4 ~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~----lee~~~~~~~~E~l~ 79 (143)
T PF12718_consen 4 ALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEK----LEESEKRKSNAEQLN 79 (143)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHhHHHHH
Confidence 3444445555555555555555555555544444433333333333333322222222111 122223333344555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 293 RRLKIMKMEHINLFEEALAYKKCAAEISEASSTIQSKINHQ 333 (943)
Q Consensus 293 ~~l~~~k~e~~~l~~e~~~~~~~~~~i~~~~~~lq~~i~~~ 333 (943)
++|..+..+.......+......+.++......+..+++.+
T Consensus 80 rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~l 120 (143)
T PF12718_consen 80 RRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKAL 120 (143)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 55555544444433333333334433333333333333333
No 86
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=93.56 E-value=6.7 Score=42.51 Aligned_cols=35 Identities=26% Similarity=0.300 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHhhcC
Q 002276 326 IQSKINHQVQLYEHLKIKFIEGTKERKELYNKVLELKG 363 (943)
Q Consensus 326 lq~~i~~~~~~~e~l~~kl~~e~~~RrkLhN~lqELKG 363 (943)
++..+..+...+...+.+|. ...+.|..++.||-+
T Consensus 202 Le~~id~le~eL~~~k~~~~---~~~~eld~~l~el~~ 236 (237)
T PF00261_consen 202 LEKEIDRLEDELEKEKEKYK---KVQEELDQTLNELNE 236 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhC
Confidence 33334444333333333332 455566666666643
No 87
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=93.53 E-value=5.6 Score=46.96 Aligned_cols=84 Identities=20% Similarity=0.203 Sum_probs=44.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhhhccHHHHHHhhHhhhhh--
Q 002276 209 GDYERLKMSYECQKKELTEAKRTLEELKREN---QLKNKEYQETWKSLQELQNELMRKSMHVGSLAFAIEGQVKEKSR-- 283 (943)
Q Consensus 209 ~e~~kL~~~~e~qk~eL~~~e~~i~eLe~en---~~K~~E~~e~~~~l~~~q~el~~~~~~v~sL~~~ie~~~~ek~k-- 283 (943)
+|--.|...+..|+..-..-+.+|.+|+-.| +.|.+|+|.... .|+.+... +..|+..|++..+++-+
T Consensus 310 eedmaLNEvL~kLk~tn~kQq~~IqdLq~sN~yLe~kvkeLQ~k~~----kQqvfvDi---inkLk~niEeLIedKY~vi 382 (527)
T PF15066_consen 310 EEDMALNEVLQKLKHTNRKQQNRIQDLQCSNLYLEKKVKELQMKIT----KQQVFVDI---INKLKENIEELIEDKYRVI 382 (527)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhhhccHHHHHHHHHHHHHhh----hhhHHHHH---HHHHHHHHHHHHHhHhHhh
Confidence 4444555555666655555566677777776 566666653321 23334333 45566666666655443
Q ss_pred -----HHHHHHHHHHHHHHHH
Q 002276 284 -----WFSSLRDLTRRLKIMK 299 (943)
Q Consensus 284 -----l~~~L~~L~~~l~~~k 299 (943)
+...|+.|+..+...+
T Consensus 383 LEKnd~~k~lqnLqe~la~tq 403 (527)
T PF15066_consen 383 LEKNDIEKTLQNLQEALANTQ 403 (527)
T ss_pred hhhhhHHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 88
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=93.25 E-value=6.3 Score=49.26 Aligned_cols=34 Identities=15% Similarity=0.236 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhHHHhhcC
Q 002276 330 INHQVQLYEHLKIKFIEGTKERKELYNKVLELKG 363 (943)
Q Consensus 330 i~~~~~~~e~l~~kl~~e~~~RrkLhN~lqELKG 363 (943)
+....+....|+.-|..|....-.|+-.|-|.|.
T Consensus 596 L~amqdk~~~LE~sLsaEtriKldLfsaLg~akr 629 (697)
T PF09726_consen 596 LSAMQDKNQHLENSLSAETRIKLDLFSALGDAKR 629 (697)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 3333444444555556666666666666655554
No 89
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=93.18 E-value=3 Score=51.05 Aligned_cols=55 Identities=20% Similarity=0.257 Sum_probs=29.3
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 206 GVKGDYERLKMSYECQKKELTEAKRTLEELKRENQLKNKEYQETWKSLQELQNEL 260 (943)
Q Consensus 206 ~~~~e~~kL~~~~e~qk~eL~~~e~~i~eLe~en~~K~~E~~e~~~~l~~~q~el 260 (943)
+...+.+.|...++.+..++..++..+..+..++.+-..+.++......++..++
T Consensus 325 ~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~ 379 (594)
T PF05667_consen 325 EQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEEL 379 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555555555555555555544444444444
No 90
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=93.11 E-value=14 Score=39.39 Aligned_cols=33 Identities=24% Similarity=0.226 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 284 WFSSLRDLTRRLKIMKMEHINLFEEALAYKKCA 316 (943)
Q Consensus 284 l~~~L~~L~~~l~~~k~e~~~l~~e~~~~~~~~ 316 (943)
+...+..++++++.++-++..|.+.+..+...-
T Consensus 91 ~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~Er 123 (201)
T PF13851_consen 91 LKARLKELEKELKDLKWEHEVLEQRFEKLEQER 123 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666666555444433
No 91
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=93.03 E-value=11 Score=38.08 Aligned_cols=27 Identities=19% Similarity=0.330 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 214 LKMSYECQKKELTEAKRTLEELKRENQ 240 (943)
Q Consensus 214 L~~~~e~qk~eL~~~e~~i~eLe~en~ 240 (943)
+...+..+..+....+..|..|...|.
T Consensus 19 ~e~~~K~le~~~~~~E~EI~sL~~K~~ 45 (143)
T PF12718_consen 19 LEAKVKQLEQENEQKEQEITSLQKKNQ 45 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333444444444443
No 92
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=93.01 E-value=11 Score=46.71 Aligned_cols=28 Identities=25% Similarity=0.337 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 212 ERLKMSYECQKKELTEAKRTLEELKREN 239 (943)
Q Consensus 212 ~kL~~~~e~qk~eL~~~e~~i~eLe~en 239 (943)
..|..+++.+++++..+..++...-.+|
T Consensus 83 ~~Lq~E~~~L~kElE~L~~qlqaqv~~n 110 (617)
T PF15070_consen 83 QQLQAEAEHLRKELESLEEQLQAQVENN 110 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666665555544444
No 93
>PRK12704 phosphodiesterase; Provisional
Probab=93.01 E-value=9.9 Score=46.03 Aligned_cols=19 Identities=11% Similarity=0.081 Sum_probs=12.2
Q ss_pred HhHHHHHHHHHhHHHhhcC
Q 002276 345 IEGTKERKELYNKVLELKG 363 (943)
Q Consensus 345 ~~e~~~RrkLhN~lqELKG 363 (943)
..+...|+-+-..+|-.-+
T Consensus 185 ~a~~~a~~i~~~a~qr~a~ 203 (520)
T PRK12704 185 EADKKAKEILAQAIQRCAA 203 (520)
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 3445667777777776555
No 94
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.00 E-value=7.6 Score=51.81 Aligned_cols=8 Identities=25% Similarity=0.231 Sum_probs=3.8
Q ss_pred eccccCCC
Q 002276 909 LLGAGRRG 916 (943)
Q Consensus 909 ~~~~~~~~ 916 (943)
|-|.|+|+
T Consensus 1303 ~~~~~~~~ 1310 (1311)
T TIGR00606 1303 PSSLGKRV 1310 (1311)
T ss_pred CccccccC
Confidence 44554443
No 95
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=93.00 E-value=12 Score=41.59 Aligned_cols=148 Identities=17% Similarity=0.108 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccHHHHHHhhHhhhhhHHHHHHHH
Q 002276 212 ERLKMSYECQKKELTEAKRTLEELKRENQLKNKEYQETWKSLQELQNELMRKSMHVGSLAFAIEGQVKEKSRWFSSLRDL 291 (943)
Q Consensus 212 ~kL~~~~e~qk~eL~~~e~~i~eLe~en~~K~~E~~e~~~~l~~~q~el~~~~~~v~sL~~~ie~~~~ek~kl~~~L~~L 291 (943)
+.+.+..+.|.+.-..+.+.|...+...+.+.+++-.....+...-..+..... ..++.+-.+..+.+.+....+..|
T Consensus 9 ~el~~h~~~L~~~N~~L~~~IqdtE~st~~~Vr~lLqqy~~~~~~i~~le~~~~--~~l~~ak~eLqe~eek~e~~l~~L 86 (258)
T PF15397_consen 9 QELKKHEDFLTKLNKELIKEIQDTEDSTALKVRKLLQQYDIYRTAIDILEYSNH--KQLQQAKAELQEWEEKEESKLSKL 86 (258)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHccCh--HHHHHHHHHHHHHHHHHHhHHHHH
Confidence 455666667777777777778888887777777764443333332233322210 011111112222233344444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHhhcC
Q 002276 292 TRRLKIMKMEHINLFEEALAYKKC--------AAEISEASSTIQSKINHQVQLYEHLKIKFIEGTKERKELYNKVLELKG 363 (943)
Q Consensus 292 ~~~l~~~k~e~~~l~~e~~~~~~~--------~~~i~~~~~~lq~~i~~~~~~~e~l~~kl~~e~~~RrkLhN~lqELKG 363 (943)
+..+..+.....+..+++..+..+ .-.|..+...++..-..+.+.+.++.+.+. ..|..|++.+++-+-
T Consensus 87 q~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdEldel~e~~~---~el~~l~~~~q~k~~ 163 (258)
T PF15397_consen 87 QQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQDELDELNEMRQ---MELASLSRKIQEKKE 163 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 555555555544544544433322 223444445555555556666666665554 677777877776654
Q ss_pred C
Q 002276 364 N 364 (943)
Q Consensus 364 N 364 (943)
+
T Consensus 164 ~ 164 (258)
T PF15397_consen 164 E 164 (258)
T ss_pred H
Confidence 3
No 96
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=92.98 E-value=7.8 Score=49.48 Aligned_cols=25 Identities=16% Similarity=-0.072 Sum_probs=11.4
Q ss_pred cchHHhhhh--cCCCcceeEEEecCCC
Q 002276 602 KLTHLLQDS--LGGDSKTLMFVQISPN 626 (943)
Q Consensus 602 KLTrLLQDS--LGGNSKTlMIv~ISPs 626 (943)
+|-..+++. |-|-.+.+=+-|.||.
T Consensus 799 s~~e~~~~~~qlq~rh~s~sse~esl~ 825 (1195)
T KOG4643|consen 799 SLSEEKSRREQLQKRHKSCSSECESLR 825 (1195)
T ss_pred hhHHHHhHHHHhhcchhhhcchhhhhh
Confidence 444555443 3344444444444444
No 97
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=92.89 E-value=11 Score=46.86 Aligned_cols=45 Identities=18% Similarity=0.245 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHhhcC
Q 002276 319 ISEASSTIQSKINHQVQLYEHLKIKFIEGTKERKELYNKVLELKG 363 (943)
Q Consensus 319 i~~~~~~lq~~i~~~~~~~e~l~~kl~~e~~~RrkLhN~lqELKG 363 (943)
+.........++.++...+.++...+..+...|++|.-++..|++
T Consensus 571 Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~ 615 (698)
T KOG0978|consen 571 LQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKR 615 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444555566666666666666677777777776666665
No 98
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=92.85 E-value=17 Score=39.51 Aligned_cols=33 Identities=6% Similarity=0.175 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHH
Q 002276 326 IQSKINHQVQLYEHLKIKFIEGTKERKELYNKV 358 (943)
Q Consensus 326 lq~~i~~~~~~~e~l~~kl~~e~~~RrkLhN~l 358 (943)
....+..+...+..+...+.......+.+-..|
T Consensus 195 aE~~v~~Le~~id~le~eL~~~k~~~~~~~~el 227 (237)
T PF00261_consen 195 AERRVKKLEKEIDRLEDELEKEKEKYKKVQEEL 227 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555666666665555555555544
No 99
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=92.83 E-value=11 Score=47.57 Aligned_cols=86 Identities=20% Similarity=0.185 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccHHHHHHhhHhhhhhHHHHHHHHHHHH
Q 002276 216 MSYECQKKELTEAKRTLEELKRENQLKNKEYQETWKSLQELQNELMRKSMHVGSLAFAIEGQVKEKSRWFSSLRDLTRRL 295 (943)
Q Consensus 216 ~~~e~qk~eL~~~e~~i~eLe~en~~K~~E~~e~~~~l~~~q~el~~~~~~v~sL~~~ie~~~~ek~kl~~~L~~L~~~l 295 (943)
+.++.-+.+...|+.++..++.+...|..|+......+..+.++...-..|++-|+..+...-.....|.+.++.|..++
T Consensus 273 k~le~~~s~~~~mK~k~d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rl 352 (775)
T PF10174_consen 273 KQLEVYKSHSLAMKSKMDRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRL 352 (775)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 34455555556677778888888888888877776666666655555466778887777776666677777777776666
Q ss_pred HHHHHH
Q 002276 296 KIMKME 301 (943)
Q Consensus 296 ~~~k~e 301 (943)
......
T Consensus 353 e~k~~~ 358 (775)
T PF10174_consen 353 EEKNSQ 358 (775)
T ss_pred HHHHHH
Confidence 655443
No 100
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=92.82 E-value=0.03 Score=59.47 Aligned_cols=50 Identities=24% Similarity=0.450 Sum_probs=31.7
Q ss_pred eeeecceeeCCCCCcccccccchhhHHHhhCCcceEEEeeCcccCccccccc
Q 002276 407 KTFKFDAVFGPQADQVDVFQDTAPFANSVLDGYNVCIFAYGQTGTGKTFTME 458 (943)
Q Consensus 407 ktF~FD~VF~~~asQeeVFeev~pLV~svLdGyNvcIFAYGQTGSGKTyTM~ 458 (943)
..|+||.-+.. ..++..|..+..+...--..||. +|-||++|+||||-|.
T Consensus 3 ~~~tFdnfv~g-~~N~~a~~~~~~ia~~~~~~~~~-l~l~G~~G~GKTHLL~ 52 (219)
T PF00308_consen 3 PKYTFDNFVVG-ESNELAYAAAKAIAENPGERYNP-LFLYGPSGLGKTHLLQ 52 (219)
T ss_dssp TT-SCCCS--T-TTTHHHHHHHHHHHHSTTTSSSE-EEEEESTTSSHHHHHH
T ss_pred CCCccccCCcC-CcHHHHHHHHHHHHhcCCCCCCc-eEEECCCCCCHHHHHH
Confidence 36999987753 44666665554554442223555 7889999999999863
No 101
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=92.73 E-value=10 Score=48.00 Aligned_cols=39 Identities=10% Similarity=0.073 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHhhcC
Q 002276 325 TIQSKINHQVQLYEHLKIKFIEGTKERKELYNKVLELKG 363 (943)
Q Consensus 325 ~lq~~i~~~~~~~e~l~~kl~~e~~~RrkLhN~lqELKG 363 (943)
+++.++....+..-+....+.+=..+-+.|..+|+|++.
T Consensus 508 el~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~d 546 (1243)
T KOG0971|consen 508 ELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTD 546 (1243)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444433333333444444555777889999999988
No 102
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=92.64 E-value=0.18 Score=59.99 Aligned_cols=90 Identities=27% Similarity=0.356 Sum_probs=59.8
Q ss_pred eeeecceeeCCCCCcccccccchhhHHHhhCCcceEEEeeCcccCccccccccC---CCCCCcc----HHhHHHHHHHHH
Q 002276 407 KTFKFDAVFGPQADQVDVFQDTAPFANSVLDGYNVCIFAYGQTGTGKTFTMEGT---KEARGVN----FRTLEELFRIIK 479 (943)
Q Consensus 407 ktF~FD~VF~~~asQeeVFeev~pLV~svLdGyNvcIFAYGQTGSGKTyTM~G~---~e~~GII----PRal~~LF~~i~ 479 (943)
..|....-|.|.-+|-. .+..||..+-.|...-+ -.|.|||||||||..- -..|-+| --...+||...+
T Consensus 3 ~~F~l~s~f~PaGDQP~---AI~~Lv~gi~~g~~~Qt-LLGvTGSGKTfT~AnVI~~~~rPtLV~AhNKTLAaQLy~Efk 78 (663)
T COG0556 3 KPFKLHSPFKPAGDQPE---AIAELVEGIENGLKHQT-LLGVTGSGKTFTMANVIAKVQRPTLVLAHNKTLAAQLYSEFK 78 (663)
T ss_pred CceEeccCCCCCCCcHH---HHHHHHHHHhcCceeeE-EeeeccCCchhHHHHHHHHhCCCeEEEecchhHHHHHHHHHH
Confidence 35666777888777753 34466777766654433 4699999999999652 1223332 123467888887
Q ss_pred hhcccceeEEEEEEEEEecch
Q 002276 480 EREKLYRYDISVSVLEVYNEQ 500 (943)
Q Consensus 480 ~~~~~~~y~V~VSflEIYNE~ 500 (943)
+-=........|||+.-|.-.
T Consensus 79 ~fFP~NaVEYFVSYYDYYQPE 99 (663)
T COG0556 79 EFFPENAVEYFVSYYDYYQPE 99 (663)
T ss_pred HhCcCcceEEEeeeccccCcc
Confidence 754556788899999888544
No 103
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=92.62 E-value=12 Score=45.32 Aligned_cols=19 Identities=16% Similarity=0.211 Sum_probs=12.7
Q ss_pred HhHHHHHHHHHhHHHhhcC
Q 002276 345 IEGTKERKELYNKVLELKG 363 (943)
Q Consensus 345 ~~e~~~RrkLhN~lqELKG 363 (943)
..+...|+-+-..+|-.-+
T Consensus 179 ~a~~~a~~i~~~aiqr~a~ 197 (514)
T TIGR03319 179 EADKKAKEILATAIQRYAG 197 (514)
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 3445667778888886665
No 104
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=92.53 E-value=5.3 Score=41.37 Aligned_cols=26 Identities=15% Similarity=0.267 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 214 LKMSYECQKKELTEAKRTLEELKREN 239 (943)
Q Consensus 214 L~~~~e~qk~eL~~~e~~i~eLe~en 239 (943)
+..++...+..+..+.+++.+++..+
T Consensus 79 ~~~e~~~~~~~l~~l~~el~~l~~~~ 104 (191)
T PF04156_consen 79 LQGELSELQQQLQQLQEELDQLQERI 104 (191)
T ss_pred hhhhHHhHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443333
No 105
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=92.33 E-value=9.1 Score=49.81 Aligned_cols=14 Identities=21% Similarity=0.162 Sum_probs=6.4
Q ss_pred HHHHHHhHHHhhcC
Q 002276 350 ERKELYNKVLELKG 363 (943)
Q Consensus 350 ~RrkLhN~lqELKG 363 (943)
.++-+.|+++.+..
T Consensus 675 ~lk~~q~~~eq~~~ 688 (1317)
T KOG0612|consen 675 KLKMLQNELEQENA 688 (1317)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444555554443
No 106
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=92.30 E-value=14 Score=37.47 Aligned_cols=93 Identities=11% Similarity=0.150 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccHHHHHHhhHhhhhhHHHHH
Q 002276 209 GDYERLKMSYECQKKELTEAKRTLEELKRENQLKNKEYQETWKSLQELQNELMRKSMHVGSLAFAIEGQVKEKSRWFSSL 288 (943)
Q Consensus 209 ~e~~kL~~~~e~qk~eL~~~e~~i~eLe~en~~K~~E~~e~~~~l~~~q~el~~~~~~v~sL~~~ie~~~~ek~kl~~~L 288 (943)
++.....++...++.....|++.++..+++...-..+.+.....+..++.++..-...+..|..++.....++..+...+
T Consensus 10 ~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~l 89 (140)
T PF10473_consen 10 EKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKEL 89 (140)
T ss_pred HHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444333333332222222223333333333333333333444444544455555555555
Q ss_pred HHHHHHHHHHHHH
Q 002276 289 RDLTRRLKIMKME 301 (943)
Q Consensus 289 ~~L~~~l~~~k~e 301 (943)
+..+.++..+..-
T Consensus 90 q~~q~kv~eLE~~ 102 (140)
T PF10473_consen 90 QKKQEKVSELESL 102 (140)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
No 107
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.25 E-value=4.3 Score=54.09 Aligned_cols=48 Identities=19% Similarity=0.173 Sum_probs=22.9
Q ss_pred HHHHHHHHHhhhhhccHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHH
Q 002276 254 QELQNELMRKSMHVGSLAFAIEGQVKEKSRWFSSLRDLTRRLKIMKME 301 (943)
Q Consensus 254 ~~~q~el~~~~~~v~sL~~~ie~~~~ek~kl~~~L~~L~~~l~~~k~e 301 (943)
.+++.++.....++..+..+++....+..++...|..|+.++..++.+
T Consensus 825 ~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~ 872 (1311)
T TIGR00606 825 QQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSE 872 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444455444444555555555554444444333
No 108
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.20 E-value=23 Score=39.56 Aligned_cols=34 Identities=18% Similarity=0.325 Sum_probs=15.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 207 VKGDYERLKMSYECQKKELTEAKRTLEELKRENQ 240 (943)
Q Consensus 207 ~~~e~~kL~~~~e~qk~eL~~~e~~i~eLe~en~ 240 (943)
+..+++.|...++....+..+.++++.+++.++.
T Consensus 50 ~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik 83 (265)
T COG3883 50 IQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIK 83 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444443
No 109
>PRK00106 hypothetical protein; Provisional
Probab=92.04 E-value=18 Score=44.11 Aligned_cols=20 Identities=15% Similarity=0.179 Sum_probs=12.8
Q ss_pred HhHHHHHHHHHhHHHhhcCC
Q 002276 345 IEGTKERKELYNKVLELKGN 364 (943)
Q Consensus 345 ~~e~~~RrkLhN~lqELKGN 364 (943)
..+...|+-+-..+|-.-+.
T Consensus 200 ~a~~~a~~ii~~aiqr~a~~ 219 (535)
T PRK00106 200 RSDKMAKDLLAQAMQRLAGE 219 (535)
T ss_pred HHHHHHHHHHHHHHHHhcch
Confidence 34556677777777766553
No 110
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=91.89 E-value=25 Score=39.75 Aligned_cols=55 Identities=13% Similarity=0.160 Sum_probs=28.3
Q ss_pred hccHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 267 VGSLAFAIEGQVKEKSRWFSSLRDLTRRLKIMKMEHINLFEEALAYKKCAAEISE 321 (943)
Q Consensus 267 v~sL~~~ie~~~~ek~kl~~~L~~L~~~l~~~k~e~~~l~~e~~~~~~~~~~i~~ 321 (943)
+..|.+++.++-.+-.++...++.+..+...|..+...+...+..+...+..+..
T Consensus 181 i~~la~eaqe~he~m~k~~~~~De~Rkeade~he~~ve~~~~~~e~~ee~~~~~~ 235 (294)
T COG1340 181 IQELANEAQEYHEEMIKLFEEADELRKEADELHEEFVELSKKIDELHEEFRNLQN 235 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4444555544444445555666666666655555555555554444444433333
No 111
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=91.85 E-value=14 Score=50.26 Aligned_cols=36 Identities=33% Similarity=0.279 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 210 DYERLKMSYECQKKELTEAKRTLEELKRENQLKNKE 245 (943)
Q Consensus 210 e~~kL~~~~e~qk~eL~~~e~~i~eLe~en~~K~~E 245 (943)
+++-|..+++.++.++..++..+.+|+.+...+.++
T Consensus 1244 k~qEl~~~i~kl~~el~plq~~l~el~~e~~~~~ae 1279 (1822)
T KOG4674|consen 1244 KIQELRDKIEKLNFELAPLQNELKELKAELQEKVAE 1279 (1822)
T ss_pred HHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555555555433333
No 112
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=91.64 E-value=13 Score=45.30 Aligned_cols=26 Identities=15% Similarity=0.133 Sum_probs=17.4
Q ss_pred cCccCcchhHHHHHHHHHHHHHHHHH
Q 002276 202 SGERGVKGDYERLKMSYECQKKELTE 227 (943)
Q Consensus 202 ~~~~~~~~e~~kL~~~~e~qk~eL~~ 227 (943)
.++.++..++..+...+......+..
T Consensus 249 ~~~~~i~~~i~~l~~~i~~~~~~l~~ 274 (569)
T PRK04778 249 LDHLDIEKEIQDLKEQIDENLALLEE 274 (569)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHh
Confidence 34677888888887777775554444
No 113
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=91.57 E-value=6.1 Score=46.71 Aligned_cols=50 Identities=16% Similarity=0.199 Sum_probs=35.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 210 DYERLKMSYECQKKELTEAKRTLEELKRENQLKNKEYQETWKSLQELQNEL 260 (943)
Q Consensus 210 e~~kL~~~~e~qk~eL~~~e~~i~eLe~en~~K~~E~~e~~~~l~~~q~el 260 (943)
-+..+-..++.++.++.++.++|.+.+. +..+..++++.|..++.-.+.+
T Consensus 265 ~~~~i~~~i~~lk~~n~~l~e~i~ea~k-~s~~i~~l~ek~r~l~~D~nk~ 314 (622)
T COG5185 265 FVHIINTDIANLKTQNDNLYEKIQEAMK-ISQKIKTLREKWRALKSDSNKY 314 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHHH
Confidence 3446667777888888888888877743 6778888888888876544333
No 114
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=91.45 E-value=9.9 Score=45.46 Aligned_cols=92 Identities=16% Similarity=0.096 Sum_probs=40.6
Q ss_pred hhhccHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 265 MHVGSLAFAIEGQVKEKSRWFSSLRDLTRRLKIMKMEHINLFEEALAYKKCAAEISEASSTIQSKINHQVQLYEHLKIKF 344 (943)
Q Consensus 265 ~~v~sL~~~ie~~~~ek~kl~~~L~~L~~~l~~~k~e~~~l~~e~~~~~~~~~~i~~~~~~lq~~i~~~~~~~e~l~~kl 344 (943)
.++.+++++|+...++..+..+.+..|...|..++....-+.-+.+.+...+....+...+++...+++++.|.+.-..+
T Consensus 212 ~q~~s~~eel~~kt~el~~q~Ee~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~ 291 (596)
T KOG4360|consen 212 TQARSGQEELQSKTKELSRQQEENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQML 291 (596)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443333333333333332333333333333333333344444444455555555555555
Q ss_pred HhHHHHHHHHHh
Q 002276 345 IEGTKERKELYN 356 (943)
Q Consensus 345 ~~e~~~RrkLhN 356 (943)
.+.+.+-+.||+
T Consensus 292 ~EaeeELk~lrs 303 (596)
T KOG4360|consen 292 HEAEEELKCLRS 303 (596)
T ss_pred HHHHHHHHhhcc
Confidence 555555555543
No 115
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=91.30 E-value=16 Score=45.76 Aligned_cols=17 Identities=24% Similarity=0.477 Sum_probs=10.0
Q ss_pred CCCCCCeeeecCCcchh
Q 002276 166 EQDPVPVVSINEDYREP 182 (943)
Q Consensus 166 ~~~~~~~~~~~~~~~~~ 182 (943)
...+..+|..|..+-++
T Consensus 22 yssp~qvidlnNes~ed 38 (1265)
T KOG0976|consen 22 YSSPFQVIDLNNESHED 38 (1265)
T ss_pred cCCCceeeeccccchHH
Confidence 34455566677666555
No 116
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=91.29 E-value=18 Score=44.03 Aligned_cols=24 Identities=29% Similarity=0.562 Sum_probs=12.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHH
Q 002276 693 LKLKDKDLKIKSLQDKVKELETQL 716 (943)
Q Consensus 693 ~kl~e~d~~i~~LqekikeLE~qL 716 (943)
..|.+++..+..|.++...+..++
T Consensus 342 ~~L~~kd~~i~~mReec~~l~~El 365 (546)
T KOG0977|consen 342 QALNDKDAEIAKMREECQQLSVEL 365 (546)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555444443
No 117
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.29 E-value=17 Score=43.85 Aligned_cols=22 Identities=23% Similarity=0.370 Sum_probs=15.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHH
Q 002276 207 VKGDYERLKMSYECQKKELTEA 228 (943)
Q Consensus 207 ~~~e~~kL~~~~e~qk~eL~~~ 228 (943)
++.+.++|+.+|+.+-++|++.
T Consensus 6 aeq~ve~lr~eierLT~el~q~ 27 (772)
T KOG0999|consen 6 AEQEVEKLRQEIERLTEELEQT 27 (772)
T ss_pred hhhhHHHHHHHHHHHHHHHHHH
Confidence 3455677777777777777765
No 118
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=91.27 E-value=17 Score=44.06 Aligned_cols=6 Identities=50% Similarity=0.706 Sum_probs=2.1
Q ss_pred HHHHHH
Q 002276 229 KRTLEE 234 (943)
Q Consensus 229 e~~i~e 234 (943)
++++..
T Consensus 224 e~~l~~ 229 (522)
T PF05701_consen 224 EEELEE 229 (522)
T ss_pred HHHHHH
Confidence 333333
No 119
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=91.13 E-value=22 Score=38.73 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 211 YERLKMSYECQKKELTEAKRTLEEL 235 (943)
Q Consensus 211 ~~kL~~~~e~qk~eL~~~e~~i~eL 235 (943)
...++..+...+.+.+.++.++++.
T Consensus 22 L~~~~~~l~~~~~~~~~l~~~i~~~ 46 (302)
T PF10186_consen 22 LLELRSELQQLKEENEELRRRIEEI 46 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 120
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=90.99 E-value=21 Score=36.85 Aligned_cols=90 Identities=16% Similarity=0.172 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhccHHHHHHhhHhhhhhHHHHHH
Q 002276 211 YERLKMSYECQKKELTEAKRTLEELKREN-QLKNKEYQETWKSLQELQNELMRKSMHVGSLAFAIEGQVKEKSRWFSSLR 289 (943)
Q Consensus 211 ~~kL~~~~e~qk~eL~~~e~~i~eLe~en-~~K~~E~~e~~~~l~~~q~el~~~~~~v~sL~~~ie~~~~ek~kl~~~L~ 289 (943)
.+++.-.+-.++.++..++.++...+.-- .+....|+........+...+..+..++..|...+.....-...+..++.
T Consensus 8 i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~ 87 (177)
T PF13870_consen 8 ISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLH 87 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443333222 23333444444444444444444444444444433333333333333333
Q ss_pred HHHHHHHHHHH
Q 002276 290 DLTRRLKIMKM 300 (943)
Q Consensus 290 ~L~~~l~~~k~ 300 (943)
.+...+..++.
T Consensus 88 ~~~~~~~~l~~ 98 (177)
T PF13870_consen 88 FLSEELERLKQ 98 (177)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 121
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=90.84 E-value=21 Score=45.28 Aligned_cols=42 Identities=21% Similarity=0.268 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhHHHH
Q 002276 660 LLRYKQMVEKTKQELKSRDVQSKRMEDTIHGLDLKLKDKDLK 701 (943)
Q Consensus 660 l~rlk~~ie~LK~eL~~~~~q~~~lE~~i~~l~~kl~e~d~~ 701 (943)
+.++...+++++.++..+..++......+...+..|.....+
T Consensus 666 leeL~~~l~k~~~Eld~l~~qL~ssq~~L~e~d~~L~~le~E 707 (775)
T PF10174_consen 666 LEELEAALEKLRQELDQLKAQLESSQQSLMERDQELNALEAE 707 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 334555555566666555555555544444444444443333
No 122
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.73 E-value=9 Score=48.11 Aligned_cols=30 Identities=30% Similarity=0.276 Sum_probs=14.6
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 206 GVKGDYERLKMSYECQKKELTEAKRTLEEL 235 (943)
Q Consensus 206 ~~~~e~~kL~~~~e~qk~eL~~~e~~i~eL 235 (943)
++......|+..+++|.+++.++++.++.+
T Consensus 562 ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l 591 (717)
T PF10168_consen 562 EIQRRVKLLKQQKEQQLKELQELQEERKSL 591 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555444444
No 123
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=90.62 E-value=23 Score=43.03 Aligned_cols=21 Identities=29% Similarity=0.265 Sum_probs=11.1
Q ss_pred eeccCCCCCCCCCCCCCCCCCcee
Q 002276 119 SLENGIKGSDDNNGSHKNKTPSVR 142 (943)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~ 142 (943)
=+|||.+++--..+. .-|+||
T Consensus 83 L~engf~~~iS~k~l---~~PS~K 103 (581)
T KOG0995|consen 83 LVENGFSHPISIKLL---MKPSVK 103 (581)
T ss_pred HHHcCCCCChhhhhc---CCCccc
Confidence 356666654333333 456666
No 124
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=90.58 E-value=16 Score=44.33 Aligned_cols=11 Identities=36% Similarity=0.386 Sum_probs=4.4
Q ss_pred HHHHHHHHHHH
Q 002276 229 KRTLEELKREN 239 (943)
Q Consensus 229 e~~i~eLe~en 239 (943)
...|..|+.++
T Consensus 248 ~~~l~~Lq~El 258 (522)
T PF05701_consen 248 SAELESLQAEL 258 (522)
T ss_pred HHHHHHHHHHH
Confidence 33344444433
No 125
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=90.55 E-value=26 Score=40.19 Aligned_cols=70 Identities=16% Similarity=0.041 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHhhhhhccHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 249 TWKSLQELQNELMRKSMHVGSLAFAIEGQVKEKSRWFSSLRDLTRRLKIMKMEHINLFEEALAYKKCAAE 318 (943)
Q Consensus 249 ~~~~l~~~q~el~~~~~~v~sL~~~ie~~~~ek~kl~~~L~~L~~~l~~~k~e~~~l~~e~~~~~~~~~~ 318 (943)
..+.|.+.+.-+++-..+...|+.-+....+++..+...|+++.+...++..|...|..|+.+.......
T Consensus 111 L~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~ 180 (401)
T PF06785_consen 111 LKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQE 180 (401)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666667777777777777888899999999988888888887776654444333
No 126
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=90.50 E-value=27 Score=42.72 Aligned_cols=49 Identities=22% Similarity=0.190 Sum_probs=27.2
Q ss_pred HHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 273 AIEGQVKEKSRWFSSLRDLTRRLKIMKMEHINLFEEALAYKKCAAEISE 321 (943)
Q Consensus 273 ~ie~~~~ek~kl~~~L~~L~~~l~~~k~e~~~l~~e~~~~~~~~~~i~~ 321 (943)
.+.........+...++.+.++++.++.++..+.+.+..+...-.+...
T Consensus 370 ~i~~~~~~ysel~e~leel~e~leeie~eq~ei~e~l~~Lrk~E~eAr~ 418 (569)
T PRK04778 370 RIAEQEIAYSELQEELEEILKQLEEIEKEQEKLSEMLQGLRKDELEARE 418 (569)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444556666666666666666666666666655554433333
No 127
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=90.46 E-value=22 Score=48.55 Aligned_cols=31 Identities=29% Similarity=0.504 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 209 GDYERLKMSYECQKKELTEAKRTLEELKREN 239 (943)
Q Consensus 209 ~e~~kL~~~~e~qk~eL~~~e~~i~eLe~en 239 (943)
+-..++...|..++++....+.++..++.+.
T Consensus 654 ~~~~~l~e~~~~l~~ev~~ir~~l~k~~~~~ 684 (1822)
T KOG4674|consen 654 ENLKKLQEDFDSLQKEVTAIRSQLEKLKNEL 684 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3344555555555555555555555444444
No 128
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=90.39 E-value=20 Score=38.20 Aligned_cols=43 Identities=21% Similarity=0.264 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 211 YERLKMSYECQKKELTEAKRTLEELKRENQLKNKEYQETWKSL 253 (943)
Q Consensus 211 ~~kL~~~~e~qk~eL~~~e~~i~eLe~en~~K~~E~~e~~~~l 253 (943)
+..-..++-.++..|...+.+..+++..++.+..+++.....+
T Consensus 63 l~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l 105 (194)
T PF15619_consen 63 LQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDEL 105 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444445555555444444444444333333
No 129
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=90.38 E-value=28 Score=39.34 Aligned_cols=21 Identities=29% Similarity=0.376 Sum_probs=8.9
Q ss_pred HHHHhHHHHHHHHHhHHHhhc
Q 002276 342 IKFIEGTKERKELYNKVLELK 362 (943)
Q Consensus 342 ~kl~~e~~~RrkLhN~lqELK 362 (943)
+++.+.......+|..+..++
T Consensus 214 e~~ve~~~~~~e~~ee~~~~~ 234 (294)
T COG1340 214 EEFVELSKKIDELHEEFRNLQ 234 (294)
T ss_pred HHHHHHHHHhHHHHHHHHHHH
Confidence 334444444444444444433
No 130
>PRK04863 mukB cell division protein MukB; Provisional
Probab=90.16 E-value=28 Score=47.23 Aligned_cols=34 Identities=21% Similarity=0.120 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhHHHhhcCCE
Q 002276 332 HQVQLYEHLKIKFIEGTKERKELYNKVLELKGNI 365 (943)
Q Consensus 332 ~~~~~~e~l~~kl~~e~~~RrkLhN~lqELKGNI 365 (943)
.+...++....++.+.+.....+.+++.+++..+
T Consensus 439 eLe~~LenF~aklee~e~qL~elE~kL~~lea~l 472 (1486)
T PRK04863 439 NAEDWLEEFQAKEQEATEELLSLEQKLSVAQAAH 472 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666777777778888888888777654
No 131
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.13 E-value=11 Score=47.41 Aligned_cols=58 Identities=26% Similarity=0.286 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhh
Q 002276 209 GDYERLKMSYECQKKE--------LTEAKRTLEELKRENQ---LKNKEYQETWKSLQELQNELMRKSMH 266 (943)
Q Consensus 209 ~e~~kL~~~~e~qk~e--------L~~~e~~i~eLe~en~---~K~~E~~e~~~~l~~~q~el~~~~~~ 266 (943)
|-++-|.+.++.++++ ..++++.+.-|+.+.+ .+..+|++..+.+++..+.|..+..+
T Consensus 536 E~l~lL~~a~~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~ 604 (717)
T PF10168_consen 536 ECLELLSQATKVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEE 604 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555 2333444444444442 34445555555555555555444333
No 132
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=90.12 E-value=31 Score=37.26 Aligned_cols=31 Identities=29% Similarity=0.400 Sum_probs=13.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 209 GDYERLKMSYECQKKELTEAKRTLEELKREN 239 (943)
Q Consensus 209 ~e~~kL~~~~e~qk~eL~~~e~~i~eLe~en 239 (943)
.+...+...++.+.....+|.+-+.+.+.-+
T Consensus 23 ~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i 53 (207)
T PF05010_consen 23 EEEQELKKKYEELHKENQEMRKIMEEYEKTI 53 (207)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3344444445444444444444444444333
No 133
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=90.10 E-value=17 Score=44.13 Aligned_cols=25 Identities=20% Similarity=0.149 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 212 ERLKMSYECQKKELTEAKRTLEELK 236 (943)
Q Consensus 212 ~kL~~~~e~qk~eL~~~e~~i~eLe 236 (943)
..+..+++.++++..++..+|++.+
T Consensus 231 ~~i~~~ie~l~~~n~~l~e~i~e~e 255 (581)
T KOG0995|consen 231 TSIANEIEDLKKTNRELEEMINERE 255 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445566666666666666666443
No 134
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.07 E-value=0.15 Score=57.29 Aligned_cols=29 Identities=28% Similarity=0.471 Sum_probs=26.6
Q ss_pred hhHHHhhCCcceEEEeeCcccCccccccc
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTFTME 458 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTyTM~ 458 (943)
|++..+++--++.|+.-|+||||||.||-
T Consensus 115 ~i~~~~~~~~~GLILVTGpTGSGKSTTlA 143 (353)
T COG2805 115 PIVRELAESPRGLILVTGPTGSGKSTTLA 143 (353)
T ss_pred HHHHHHHhCCCceEEEeCCCCCcHHHHHH
Confidence 57888999999999999999999999983
No 135
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=89.92 E-value=33 Score=43.25 Aligned_cols=67 Identities=10% Similarity=0.133 Sum_probs=36.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccHHHHHH
Q 002276 209 GDYERLKMSYECQKKELTEAKRTLEELKRENQLKNKEYQETWKSLQELQNELMRKSMHVGSLAFAIE 275 (943)
Q Consensus 209 ~e~~kL~~~~e~qk~eL~~~e~~i~eLe~en~~K~~E~~e~~~~l~~~q~el~~~~~~v~sL~~~ie 275 (943)
++.-.++....-+..++...+.+|.+|+..|...-.|.+........++.++..-..++.++..+++
T Consensus 85 qetriyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh 151 (1265)
T KOG0976|consen 85 QETRIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLH 151 (1265)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3444556666666666666677777776555554444444455555555555544444444433333
No 136
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=89.89 E-value=23 Score=36.57 Aligned_cols=81 Identities=14% Similarity=0.140 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHhhc
Q 002276 283 RWFSSLRDLTRRLKIMKMEHINLFEEALAYKKCAAEISEASSTIQSKINHQVQLYEHLKIKFIEGTKERKELYNKVLELK 362 (943)
Q Consensus 283 kl~~~L~~L~~~l~~~k~e~~~l~~e~~~~~~~~~~i~~~~~~lq~~i~~~~~~~e~l~~kl~~e~~~RrkLhN~lqELK 362 (943)
.+...|++-...+..|+.-.......+...++.+..+......+...+......+..+...+......|.++++...+|+
T Consensus 53 ~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~ 132 (177)
T PF13870_consen 53 QLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLR 132 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555544444555555666666666666667777777777777788888888888888888888776
Q ss_pred C
Q 002276 363 G 363 (943)
Q Consensus 363 G 363 (943)
-
T Consensus 133 ~ 133 (177)
T PF13870_consen 133 Q 133 (177)
T ss_pred H
Confidence 4
No 137
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.83 E-value=27 Score=42.35 Aligned_cols=37 Identities=22% Similarity=0.225 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 283 RWFSSLRDLTRRLKIMKMEHINLFEEALAYKKCAAEI 319 (943)
Q Consensus 283 kl~~~L~~L~~~l~~~k~e~~~l~~e~~~~~~~~~~i 319 (943)
+++..|++.+.+-.-|-.+++.|.++...+++.+..+
T Consensus 153 rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~L 189 (772)
T KOG0999|consen 153 RLRDELKEYKFREARLLSEYSELEEENISLQKQVSNL 189 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 3555555554444444455555555555555544443
No 138
>PRK06893 DNA replication initiation factor; Validated
Probab=89.49 E-value=0.19 Score=53.66 Aligned_cols=47 Identities=11% Similarity=0.248 Sum_probs=32.2
Q ss_pred eeeecceeeCCCCCcccccccchhhHHHhhCCcceEEEeeCcccCccccccc
Q 002276 407 KTFKFDAVFGPQADQVDVFQDTAPFANSVLDGYNVCIFAYGQTGTGKTFTME 458 (943)
Q Consensus 407 ktF~FD~VF~~~asQeeVFeev~pLV~svLdGyNvcIFAYGQTGSGKTyTM~ 458 (943)
..++||..+..... .- +.-+....-+++|..++-||++|+||||-+.
T Consensus 11 ~~~~fd~f~~~~~~-~~----~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ 57 (229)
T PRK06893 11 DDETLDNFYADNNL-LL----LDSLRKNFIDLQQPFFYIWGGKSSGKSHLLK 57 (229)
T ss_pred CcccccccccCChH-HH----HHHHHHHhhccCCCeEEEECCCCCCHHHHHH
Confidence 35889998865421 11 1123333445788889999999999999974
No 139
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=89.45 E-value=39 Score=37.49 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 212 ERLKMSYECQKKELTEAKRTLEELKRENQ 240 (943)
Q Consensus 212 ~kL~~~~e~qk~eL~~~e~~i~eLe~en~ 240 (943)
.++++-+++-++||.+.+.-..|++++++
T Consensus 23 ~~ykq~f~~~reEl~EFQegSrE~Eaele 51 (333)
T KOG1853|consen 23 HEYKQHFLQMREELNEFQEGSREIEAELE 51 (333)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 45566666666666665555555555553
No 140
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=89.44 E-value=34 Score=36.88 Aligned_cols=28 Identities=7% Similarity=-0.003 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhHHH
Q 002276 332 HQVQLYEHLKIKFIEGTKERKELYNKVL 359 (943)
Q Consensus 332 ~~~~~~e~l~~kl~~e~~~RrkLhN~lq 359 (943)
........|...+.+++.....|..+|.
T Consensus 158 ~~~~e~~aLqa~lkk~e~~~~SLe~~Le 185 (207)
T PF05010_consen 158 KHQAELLALQASLKKEEMKVQSLEESLE 185 (207)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444566666666666666665554
No 141
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=89.38 E-value=27 Score=44.81 Aligned_cols=14 Identities=14% Similarity=0.672 Sum_probs=10.2
Q ss_pred CCceeeEEEEEEEE
Q 002276 567 SRSHCMHCVMVRRE 580 (943)
Q Consensus 567 SRSHsIftI~V~~~ 580 (943)
+|+|-+=+|++.+.
T Consensus 634 ak~~~ln~ITl~GD 647 (1200)
T KOG0964|consen 634 AKKHELNCITLSGD 647 (1200)
T ss_pred HHhcCCCeEEeccc
Confidence 46787778888765
No 142
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=89.29 E-value=14 Score=41.90 Aligned_cols=8 Identities=38% Similarity=0.476 Sum_probs=3.3
Q ss_pred HHHhhcCC
Q 002276 357 KVLELKGN 364 (943)
Q Consensus 357 ~lqELKGN 364 (943)
+|..|+..
T Consensus 277 Ev~~Lk~~ 284 (325)
T PF08317_consen 277 EVKRLKAK 284 (325)
T ss_pred HHHHHHHH
Confidence 34444443
No 143
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=89.24 E-value=34 Score=36.50 Aligned_cols=25 Identities=36% Similarity=0.554 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 216 MSYECQKKELTEAKRTLEELKRENQ 240 (943)
Q Consensus 216 ~~~e~qk~eL~~~e~~i~eLe~en~ 240 (943)
-.|..++.++.+++.++.++..||.
T Consensus 12 ~ki~~L~n~l~elq~~l~~l~~ENk 36 (194)
T PF15619_consen 12 HKIKELQNELAELQRKLQELRKENK 36 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788888888888888888884
No 144
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=89.22 E-value=51 Score=38.58 Aligned_cols=43 Identities=14% Similarity=0.197 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHhhhhhccHHHHHHhhHhhhhhHHHHHH
Q 002276 247 QETWKSLQELQNELMRKSMHVGSLAFAIEGQVKEKSRWFSSLR 289 (943)
Q Consensus 247 ~e~~~~l~~~q~el~~~~~~v~sL~~~ie~~~~ek~kl~~~L~ 289 (943)
.++..++...+++|.+-..+-..|...+.....+..++.+..+
T Consensus 126 ~~a~~n~~kAqQ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~q 168 (499)
T COG4372 126 AAARQNLAKAQQELARLTKQAQDLQTRLKTLAEQRRQLEAQAQ 168 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555556666666555555555555544444444333333
No 145
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=89.03 E-value=40 Score=41.90 Aligned_cols=52 Identities=23% Similarity=0.210 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhh
Q 002276 213 RLKMSYECQKKELTEAKRTLEELKRENQ-----LKNKEYQETWKSLQELQNELMRKS 264 (943)
Q Consensus 213 kL~~~~e~qk~eL~~~e~~i~eLe~en~-----~K~~E~~e~~~~l~~~q~el~~~~ 264 (943)
-|.+++.-+.+|...+++.+..|+.+.. .-++||.+....+...-+.|.++.
T Consensus 413 ~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~q 469 (961)
T KOG4673|consen 413 TLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQ 469 (961)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3444555555555555555555555542 234456666666665555555554
No 146
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=88.82 E-value=23 Score=45.83 Aligned_cols=12 Identities=33% Similarity=0.540 Sum_probs=6.6
Q ss_pred ecCCCceeeecC
Q 002276 82 SLTSPDLVICGG 93 (943)
Q Consensus 82 ~~~~~~~~~~~~ 93 (943)
+.-||-+|-|-|
T Consensus 66 ~~~s~~VVs~~~ 77 (1041)
T KOG0243|consen 66 KSKSSVVVSCDG 77 (1041)
T ss_pred hcCCCeEEecCC
Confidence 344555666655
No 147
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=88.67 E-value=24 Score=46.30 Aligned_cols=46 Identities=15% Similarity=0.149 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 002276 309 ALAYKKCAAEISEASSTIQSKINHQVQLYEHLKIKFIEGTKERKEL 354 (943)
Q Consensus 309 ~~~~~~~~~~i~~~~~~lq~~i~~~~~~~e~l~~kl~~e~~~RrkL 354 (943)
++.+.....++.++..+++..+..++...+.....+.+-+.+||..
T Consensus 611 ~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~ 656 (1317)
T KOG0612|consen 611 LEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEELKREN 656 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3333444445555566666666666655555554444433344433
No 148
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=88.64 E-value=36 Score=37.86 Aligned_cols=59 Identities=20% Similarity=0.421 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHH
Q 002276 658 SELLRYKQMVEKTKQELKSRDVQSKRMEDTIHGLDLKLK----DKDLKIKSLQDKVKELETQL 716 (943)
Q Consensus 658 ~el~rlk~~ie~LK~eL~~~~~q~~~lE~~i~~l~~kl~----e~d~~i~~LqekikeLE~qL 716 (943)
.++..++..+..|..++..+..+...++..+..++..+. .....|..++.++..+..++
T Consensus 216 ~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~ 278 (312)
T PF00038_consen 216 EELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEM 278 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Confidence 355666777777777777777777777777766654333 23333444444444444433
No 149
>PRK01156 chromosome segregation protein; Provisional
Probab=88.61 E-value=45 Score=42.72 Aligned_cols=12 Identities=25% Similarity=0.384 Sum_probs=6.6
Q ss_pred hhhhHHHHHHHH
Q 002276 858 KKLSSALRRSLQ 869 (943)
Q Consensus 858 ~~~~~~~~~~~~ 869 (943)
..+..+|+..+.
T Consensus 844 ~~l~~~l~~~~~ 855 (895)
T PRK01156 844 TNLKDIIEYSLK 855 (895)
T ss_pred HHHHHHHHHHHH
Confidence 346666665544
No 150
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=88.61 E-value=38 Score=39.83 Aligned_cols=23 Identities=9% Similarity=0.260 Sum_probs=15.9
Q ss_pred HHHHHhHHHhhcCCEEEEEEeCC
Q 002276 351 RKELYNKVLELKGNIRVFCRCRP 373 (943)
Q Consensus 351 RrkLhN~lqELKGNIRV~~RVRP 373 (943)
--+++|...+--|.+-|..---|
T Consensus 326 eery~Ne~~~~g~s~~Va~~asa 348 (552)
T KOG2129|consen 326 EERYLNEFVDFGDSVEVALHASA 348 (552)
T ss_pred HHHHHhhhhccCCceeeecccch
Confidence 34678888888887777655443
No 151
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=88.59 E-value=28 Score=35.03 Aligned_cols=44 Identities=7% Similarity=-0.031 Sum_probs=26.7
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 206 GVKGDYERLKMSYECQKKELTEAKRTLEELKRENQLKNKEYQET 249 (943)
Q Consensus 206 ~~~~e~~kL~~~~e~qk~eL~~~e~~i~eLe~en~~K~~E~~e~ 249 (943)
+.......+.+.+..+......-...-+.+...++.+..+....
T Consensus 28 ~~~~~~~~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l 71 (151)
T PF11559_consen 28 ESEDNDVRVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERL 71 (151)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 45566667777777777666665555566655555555544433
No 152
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=88.53 E-value=45 Score=38.24 Aligned_cols=44 Identities=23% Similarity=0.229 Sum_probs=28.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 280 EKSRWFSSLRDLTRRLKIMKMEHINLFEEALAYKKCAAEISEAS 323 (943)
Q Consensus 280 ek~kl~~~L~~L~~~l~~~k~e~~~l~~e~~~~~~~~~~i~~~~ 323 (943)
..+++...+.+|+.++.++-.|...+..+...|+.....++...
T Consensus 134 qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~EL 177 (319)
T PF09789_consen 134 QLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHEL 177 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455666667777777776666677777777777665555443
No 153
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=88.50 E-value=45 Score=42.03 Aligned_cols=68 Identities=25% Similarity=0.365 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhH----HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 658 SELLRYKQMVEKTKQELKSRDV----QSKRMEDTIHGLDLKLKDKDLKIKSLQDKVKELETQLLVERKLARQ 725 (943)
Q Consensus 658 ~el~rlk~~ie~LK~eL~~~~~----q~~~lE~~i~~l~~kl~e~d~~i~~LqekikeLE~qL~~erkl~rq 725 (943)
.++.+++.++..|+.++..... ....++..++.+..++...+...+.-++++..|+..|......+-.
T Consensus 366 ~Ev~~Lk~ELk~Lk~k~~~~~~~~~~ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~~A~E 437 (717)
T PF09730_consen 366 SEVIQLKAELKALKSKYNELEERYKQEKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELRALSKLAGE 437 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 4455666666666665554433 2234455566666666655555555567888888887666555433
No 154
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=88.29 E-value=14 Score=40.35 Aligned_cols=44 Identities=11% Similarity=0.130 Sum_probs=23.5
Q ss_pred hhhccHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 265 MHVGSLAFAIEGQVKEKSRWFSSLRDLTRRLKIMKMEHINLFEE 308 (943)
Q Consensus 265 ~~v~sL~~~ie~~~~ek~kl~~~L~~L~~~l~~~k~e~~~l~~e 308 (943)
..+..+.++++....|+....+.|+++.+++..|......+..+
T Consensus 32 ~~L~e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~e 75 (230)
T PF10146_consen 32 KCLEEYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESE 75 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555556666666666666665544433333
No 155
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=88.03 E-value=45 Score=40.19 Aligned_cols=13 Identities=38% Similarity=0.480 Sum_probs=6.5
Q ss_pred HHHHhHHHhhcCC
Q 002276 352 KELYNKVLELKGN 364 (943)
Q Consensus 352 rkLhN~lqELKGN 364 (943)
..-.|-...|||+
T Consensus 186 ~ea~nLt~ALkgd 198 (475)
T PRK10361 186 QEAINLTRALKGD 198 (475)
T ss_pred HHHHHHHHHHcCC
Confidence 3334444556664
No 156
>PRK06835 DNA replication protein DnaC; Validated
Probab=87.98 E-value=0.14 Score=58.03 Aligned_cols=55 Identities=29% Similarity=0.522 Sum_probs=33.1
Q ss_pred ccccchhhHHHhhCCcceEEEeeCcccCccccccccCC-----CCCCccHHhHHHHHHHHH
Q 002276 424 VFQDTAPFANSVLDGYNVCIFAYGQTGTGKTFTMEGTK-----EARGVNFRTLEELFRIIK 479 (943)
Q Consensus 424 VFeev~pLV~svLdGyNvcIFAYGQTGSGKTyTM~G~~-----e~~GIIPRal~~LF~~i~ 479 (943)
+++.+...++.+-.+. -.++-||+||+||||.+.+-- ....++...+.++|..+.
T Consensus 168 ~~~~~~~f~~~f~~~~-~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~ 227 (329)
T PRK06835 168 ILEKCKNFIENFDKNN-ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILR 227 (329)
T ss_pred HHHHHHHHHHHHhccC-CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHH
Confidence 3333345666665444 569999999999999885521 123344444455555443
No 157
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=87.96 E-value=57 Score=38.23 Aligned_cols=96 Identities=17% Similarity=0.229 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccHHHHHHhhHhhhhhHHHHHH
Q 002276 210 DYERLKMSYECQKKELTEAKRTLEELKRENQLKNKEYQETWKSLQELQNELMRKSMHVGSLAFAIEGQVKEKSRWFSSLR 289 (943)
Q Consensus 210 e~~kL~~~~e~qk~eL~~~e~~i~eLe~en~~K~~E~~e~~~~l~~~q~el~~~~~~v~sL~~~ie~~~~ek~kl~~~L~ 289 (943)
+.+.+...++.++.||...+....+.+.|-+.-..|++..-..-...+++ ...+.....+-..+..++....+
T Consensus 75 qlddi~~qlr~~rtel~~a~~~k~~~e~er~~~~~El~~~r~e~~~v~~~-------~~~a~~n~~kAqQ~lar~t~Q~q 147 (499)
T COG4372 75 QLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQE-------LAAARQNLAKAQQELARLTKQAQ 147 (499)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566667777777887777777777665544444444332221111111 22223333333344445555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002276 290 DLTRRLKIMKMEHINLFEEALAY 312 (943)
Q Consensus 290 ~L~~~l~~~k~e~~~l~~e~~~~ 312 (943)
+|+..++.+-.++..+..+...+
T Consensus 148 ~lqtrl~~l~~qr~ql~aq~qsl 170 (499)
T COG4372 148 DLQTRLKTLAEQRRQLEAQAQSL 170 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666655555555554443
No 158
>PRK01156 chromosome segregation protein; Provisional
Probab=87.92 E-value=42 Score=42.92 Aligned_cols=18 Identities=17% Similarity=0.041 Sum_probs=11.0
Q ss_pred CCCCccHHhHHHHHHHHH
Q 002276 462 EARGVNFRTLEELFRIIK 479 (943)
Q Consensus 462 e~~GIIPRal~~LF~~i~ 479 (943)
...|+=+.....++..+.
T Consensus 834 pt~~lD~~~~~~l~~~l~ 851 (895)
T PRK01156 834 PTAFLDEDRRTNLKDIIE 851 (895)
T ss_pred CCCcCCHHHHHHHHHHHH
Confidence 345666666666666554
No 159
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=87.78 E-value=19 Score=44.14 Aligned_cols=76 Identities=24% Similarity=0.249 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHhhc
Q 002276 283 RWFSSLRDLTRRLKIMKMEHINLFEEALAYKKCAAEISEASSTIQSKINHQVQLYEHLKIKFIEGTKERKELYNKVLELK 362 (943)
Q Consensus 283 kl~~~L~~L~~~l~~~k~e~~~l~~e~~~~~~~~~~i~~~~~~lq~~i~~~~~~~e~l~~kl~~e~~~RrkLhN~lqELK 362 (943)
++...++.|+..+..|+.+...|..++..++..+.. ......++......++.|..+|.++......|.++|.+++
T Consensus 433 ~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~----~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 433 RLEEENSELKRELEELKREIEKLESELERFRREVRD----KVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555544444443321 1112334445556677788888888888888888887776
No 160
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=87.62 E-value=5 Score=42.15 Aligned_cols=7 Identities=43% Similarity=0.615 Sum_probs=0.0
Q ss_pred HHHHHHH
Q 002276 221 QKKELTE 227 (943)
Q Consensus 221 qk~eL~~ 227 (943)
++.||++
T Consensus 79 l~~ELae 85 (194)
T PF08614_consen 79 LQEELAE 85 (194)
T ss_dssp -------
T ss_pred ccccccc
Confidence 3333333
No 161
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=87.59 E-value=3.6 Score=45.59 Aligned_cols=118 Identities=21% Similarity=0.353 Sum_probs=65.7
Q ss_pred EEEEEEeCCCCchhhccC---------CeeEEeeecc-CCCeEEEEeCCcCceeeecceeeCCCCCcccccccch-hhHH
Q 002276 365 IRVFCRCRPLNSEETAAG---------SVMAVDFESV-RDGELTVISNGAPKKTFKFDAVFGPQADQVDVFQDTA-PFAN 433 (943)
Q Consensus 365 IRV~~RVRPl~~~E~~~g---------~~~~V~~~s~-~d~~i~v~~~g~~~ktF~FD~VF~~~asQeeVFeev~-pLV~ 433 (943)
-.-||||-....+|.-.. +...|++-+. .+..+....... +-..+|..|=+-+..-++|-+.+. ||.+
T Consensus 99 sny~vrilstidrellkps~svalhrhsnalvdvlppeadssi~ml~~~e-kpdvsy~diggld~qkqeireavelplt~ 177 (408)
T KOG0727|consen 99 SNYYVRILSTIDRELLKPSASVALHRHSNALVDVLPPEADSSISMLGPDE-KPDVSYADIGGLDVQKQEIREAVELPLTH 177 (408)
T ss_pred CceEEeehhhhhHHHcCCccchhhhhcccceeeccCCcccccccccCCCC-CCCccccccccchhhHHHHHHHHhccchH
Confidence 356788877666654322 1123333222 344444443321 122344445555555555666554 6665
Q ss_pred HhhC---Ccc--eEEEeeCcccCccccccc--------------cCC---CCCCccHHhHHHHHHHHHhhcc
Q 002276 434 SVLD---GYN--VCIFAYGQTGTGKTFTME--------------GTK---EARGVNFRTLEELFRIIKEREK 483 (943)
Q Consensus 434 svLd---GyN--vcIFAYGQTGSGKTyTM~--------------G~~---e~~GIIPRal~~LF~~i~~~~~ 483 (943)
.-|- |.. --|+.||+.|+|||-..- |+. .-.|--||.++++|+..++...
T Consensus 178 ~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrlakenap 249 (408)
T KOG0727|consen 178 ADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAP 249 (408)
T ss_pred HHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHHhccCC
Confidence 5331 332 248899999999975331 211 1257789999999999887554
No 162
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=87.56 E-value=0.31 Score=57.84 Aligned_cols=30 Identities=30% Similarity=0.300 Sum_probs=26.6
Q ss_pred hhHHHhhCCcceEEEeeCcccCcccccccc
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTFTMEG 459 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTyTM~G 459 (943)
..+..++..-++-|+.-|+||||||.||+.
T Consensus 248 ~~~~~~~~~p~GliLvTGPTGSGKTTTLY~ 277 (500)
T COG2804 248 ARLLRLLNRPQGLILVTGPTGSGKTTTLYA 277 (500)
T ss_pred HHHHHHHhCCCeEEEEeCCCCCCHHHHHHH
Confidence 567788899999999999999999999853
No 163
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=87.55 E-value=43 Score=35.74 Aligned_cols=50 Identities=20% Similarity=0.301 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 211 YERLKMSYECQKKELTEAKRTLEELKRENQLKNKEYQETWKSLQELQNEL 260 (943)
Q Consensus 211 ~~kL~~~~e~qk~eL~~~e~~i~eLe~en~~K~~E~~e~~~~l~~~q~el 260 (943)
+..|+.+++..++.....++.+.++..+|..-..-+..+.....+++..+
T Consensus 29 IksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L 78 (201)
T PF13851_consen 29 IKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQL 78 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555566666666555555554444444444444
No 164
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.35 E-value=11 Score=47.12 Aligned_cols=35 Identities=20% Similarity=0.193 Sum_probs=17.4
Q ss_pred cCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 205 RGVKGDYERLKMSYECQKKELTEAKRTLEELKREN 239 (943)
Q Consensus 205 ~~~~~e~~kL~~~~e~qk~eL~~~e~~i~eLe~en 239 (943)
+++.-++++|..++..+.++-.++++++..|+.+.
T Consensus 681 ~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qL 715 (970)
T KOG0946|consen 681 KELQVENEELEEEVQDFISEHSQLKDQLDLLKNQL 715 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444555555555555555555555555444443
No 165
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=87.25 E-value=0.21 Score=60.92 Aligned_cols=52 Identities=23% Similarity=0.426 Sum_probs=35.8
Q ss_pred ceeeecceeeCCCCCcccccccchhhHHHhhCCcceEEEeeCcccCcccccccc
Q 002276 406 KKTFKFDAVFGPQADQVDVFQDTAPFANSVLDGYNVCIFAYGQTGTGKTFTMEG 459 (943)
Q Consensus 406 ~ktF~FD~VF~~~asQeeVFeev~pLV~svLdGyNvcIFAYGQTGSGKTyTM~G 459 (943)
...|+||..+-... +..+|..+..++...-.+||. ||-||.+|+||||-+..
T Consensus 282 ~~~~TFDnFvvG~s-N~~A~aaa~avae~~~~~~Np-L~LyG~sGsGKTHLL~A 333 (617)
T PRK14086 282 NPKYTFDTFVIGAS-NRFAHAAAVAVAEAPAKAYNP-LFIYGESGLGKTHLLHA 333 (617)
T ss_pred CCCCCHhhhcCCCc-cHHHHHHHHHHHhCccccCCc-EEEECCCCCCHHHHHHH
Confidence 35689998765433 444554444555544456886 89999999999999854
No 166
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=87.16 E-value=54 Score=37.44 Aligned_cols=13 Identities=23% Similarity=-0.069 Sum_probs=7.4
Q ss_pred HHHhhCCcceEEE
Q 002276 432 ANSVLDGYNVCIF 444 (943)
Q Consensus 432 V~svLdGyNvcIF 444 (943)
+..+-.|-.+.|.
T Consensus 321 ~~~i~~G~~v~v~ 333 (423)
T TIGR01843 321 IGFVHVGQPAEIK 333 (423)
T ss_pred hhhhCCCCceEEE
Confidence 3444567666654
No 167
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=87.02 E-value=74 Score=37.84 Aligned_cols=29 Identities=24% Similarity=0.321 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 211 YERLKMSYECQKKELTEAKRTLEELKREN 239 (943)
Q Consensus 211 ~~kL~~~~e~qk~eL~~~e~~i~eLe~en 239 (943)
.+=+.+.+..++.++.+.+.++.+.+.+|
T Consensus 163 ~~fl~~ql~~~~~~L~~ae~~l~~f~~~~ 191 (498)
T TIGR03007 163 QRFIDEQIKTYEKKLEAAENRLKAFKQEN 191 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34445555555555555555555555444
No 168
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=86.91 E-value=33 Score=44.19 Aligned_cols=22 Identities=27% Similarity=0.143 Sum_probs=11.4
Q ss_pred HHHHHhHHHHHHHHHhHHHhhc
Q 002276 341 KIKFIEGTKERKELYNKVLELK 362 (943)
Q Consensus 341 ~~kl~~e~~~RrkLhN~lqELK 362 (943)
+..+.+|..+|-.+-|...++.
T Consensus 470 k~lWREE~~l~~~i~~~~~dl~ 491 (1200)
T KOG0964|consen 470 KELWREEKKLRSLIANLEEDLS 491 (1200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555543
No 169
>PRK06620 hypothetical protein; Validated
Probab=86.91 E-value=0.22 Score=52.86 Aligned_cols=49 Identities=14% Similarity=0.274 Sum_probs=33.2
Q ss_pred eeeecceeeCCCCCcccccccchhhHHHhhCCcc---eEEEeeCcccCccccccc
Q 002276 407 KTFKFDAVFGPQADQVDVFQDTAPFANSVLDGYN---VCIFAYGQTGTGKTFTME 458 (943)
Q Consensus 407 ktF~FD~VF~~~asQeeVFeev~pLV~svLdGyN---vcIFAYGQTGSGKTyTM~ 458 (943)
..|+||..+...+ +...|..+..+... -|+| -.+|-||++||||||.+.
T Consensus 11 ~~~tfd~Fvvg~~-N~~a~~~~~~~~~~--~~~~~~~~~l~l~Gp~G~GKThLl~ 62 (214)
T PRK06620 11 SKYHPDEFIVSSS-NDQAYNIIKNWQCG--FGVNPYKFTLLIKGPSSSGKTYLTK 62 (214)
T ss_pred CCCCchhhEeccc-HHHHHHHHHHHHHc--cccCCCcceEEEECCCCCCHHHHHH
Confidence 4689998776544 45566655443321 1444 358999999999999985
No 170
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=86.81 E-value=9 Score=43.46 Aligned_cols=11 Identities=9% Similarity=0.232 Sum_probs=6.5
Q ss_pred CccccccccCC
Q 002276 451 TGKTFTMEGTK 461 (943)
Q Consensus 451 SGKTyTM~G~~ 461 (943)
.+.+|.++|+.
T Consensus 215 ~~~~~~ly~~~ 225 (314)
T PF04111_consen 215 DKTTYPLYSSG 225 (314)
T ss_dssp TCEEEESS--S
T ss_pred CCeEEecccCC
Confidence 56778887764
No 171
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=86.68 E-value=48 Score=39.09 Aligned_cols=40 Identities=15% Similarity=0.123 Sum_probs=31.3
Q ss_pred cCccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 202 SGERGVKGDYERLKMSYECQKKELTEAKRTLEELKRENQL 241 (943)
Q Consensus 202 ~~~~~~~~e~~kL~~~~e~qk~eL~~~e~~i~eLe~en~~ 241 (943)
.-.........++..++...++....++..++.|+...+.
T Consensus 205 ~~~~~~~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~~~~ 244 (395)
T PF10267_consen 205 SVSSQQNLGLQKILEELREIKESQSRLEESIEKLKEQYQR 244 (395)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667778888888888888888888888888876544
No 172
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.56 E-value=55 Score=39.82 Aligned_cols=52 Identities=17% Similarity=0.056 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHhhcC
Q 002276 312 YKKCAAEISEASSTIQSKINHQVQLYEHLKIKFIEGTKERKELYNKVLELKG 363 (943)
Q Consensus 312 ~~~~~~~i~~~~~~lq~~i~~~~~~~e~l~~kl~~e~~~RrkLhN~lqELKG 363 (943)
|++....+.......+++++.+.=.++.-+++.-+-+..-++-||.+-|.+-
T Consensus 364 lkehassLas~glk~ds~Lk~leIalEqkkEec~kme~qLkkAh~~~ddar~ 415 (654)
T KOG4809|consen 364 LKEHASSLASAGLKRDSKLKSLEIALEQKKEECSKMEAQLKKAHNIEDDARM 415 (654)
T ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhc
Confidence 3333333333334456666666666777777787888888999998887654
No 173
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=86.42 E-value=28 Score=37.03 Aligned_cols=60 Identities=17% Similarity=0.131 Sum_probs=32.3
Q ss_pred HHHHHHHHHhhhhhccHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 254 QELQNELMRKSMHVGSLAFAIEGQVKEKSRWFSSLRDLTRRLKIMKMEHINLFEEALAYK 313 (943)
Q Consensus 254 ~~~q~el~~~~~~v~sL~~~ie~~~~ek~kl~~~L~~L~~~l~~~k~e~~~l~~e~~~~~ 313 (943)
..+++...+...+...++..++....+..++...+.+|+.++-.++.+...+....++..
T Consensus 99 L~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~ 158 (190)
T PF05266_consen 99 LSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKD 158 (190)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333344455555554445566777777777777777665544444444333
No 174
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=86.40 E-value=1.6 Score=50.88 Aligned_cols=50 Identities=20% Similarity=0.425 Sum_probs=29.6
Q ss_pred eeecceeeCCCCCcccccccch-hhHH-HhhC--C--cceEEEeeCcccCcccccc
Q 002276 408 TFKFDAVFGPQADQVDVFQDTA-PFAN-SVLD--G--YNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 408 tF~FD~VF~~~asQeeVFeev~-pLV~-svLd--G--yNvcIFAYGQTGSGKTyTM 457 (943)
.++|+.|.+.+..-+++-+.+. |+.. ..+. | ....|+-||+.|+|||+..
T Consensus 141 ~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 141 DVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred CCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 4566666665444344433333 4332 2333 2 2356888999999999986
No 175
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=86.26 E-value=69 Score=36.73 Aligned_cols=33 Identities=21% Similarity=0.205 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHhHHHhhcCCEEEE
Q 002276 336 LYEHLKIKFIEGTKERKELYNKVLELKGNIRVF 368 (943)
Q Consensus 336 ~~e~l~~kl~~e~~~RrkLhN~lqELKGNIRV~ 368 (943)
.++.|..-++.-+..|-.|+..+.++.++|.+-
T Consensus 300 kiq~LekLcRALq~ernel~~~~~~~e~~v~~k 332 (391)
T KOG1850|consen 300 KIQRLEKLCRALQTERNELNKKLEDLEAQVSAK 332 (391)
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHhcccchh
Confidence 344455555566788999999999999999883
No 176
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=86.25 E-value=55 Score=35.65 Aligned_cols=12 Identities=25% Similarity=0.576 Sum_probs=6.1
Q ss_pred HHHHHHHhHHHh
Q 002276 349 KERKELYNKVLE 360 (943)
Q Consensus 349 ~~RrkLhN~lqE 360 (943)
..|+.+-.+|..
T Consensus 144 ~~r~~l~~~l~~ 155 (302)
T PF10186_consen 144 RRRRQLIQELSE 155 (302)
T ss_pred HHHHHHHHHHHH
Confidence 455555555544
No 177
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=86.21 E-value=78 Score=42.31 Aligned_cols=53 Identities=28% Similarity=0.376 Sum_probs=29.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 208 KGDYERLKMSYECQKKELTEAKRTLEELKRENQLKNKEYQETWKSLQELQNEL 260 (943)
Q Consensus 208 ~~e~~kL~~~~e~qk~eL~~~e~~i~eLe~en~~K~~E~~e~~~~l~~~q~el 260 (943)
+..+..+....+.+.+++....+++.+++.+......+++..-..+..++++.
T Consensus 613 ~~~l~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 665 (1201)
T PF12128_consen 613 EDQLQSAEERQEELEKQLKQINKKIEELKREITQAEQELKQAEQDLQRLKNER 665 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 44455555555666666666666666666666555555554444444444444
No 178
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=86.15 E-value=5.4 Score=45.52 Aligned_cols=17 Identities=41% Similarity=0.704 Sum_probs=15.0
Q ss_pred eEEEeeCcccCcccccc
Q 002276 441 VCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 441 vcIFAYGQTGSGKTyTM 457 (943)
..|+-||++|+|||+++
T Consensus 157 ~gvLL~GppGtGKT~la 173 (364)
T TIGR01242 157 KGVLLYGPPGTGKTLLA 173 (364)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45888999999999987
No 179
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=86.09 E-value=69 Score=36.59 Aligned_cols=6 Identities=33% Similarity=0.872 Sum_probs=2.4
Q ss_pred eEEEEE
Q 002276 487 YDISVS 492 (943)
Q Consensus 487 y~V~VS 492 (943)
|.|.+.
T Consensus 367 ~~v~i~ 372 (423)
T TIGR01843 367 YRVRIS 372 (423)
T ss_pred EEEEEE
Confidence 444433
No 180
>PRK08084 DNA replication initiation factor; Provisional
Probab=86.08 E-value=0.3 Score=52.39 Aligned_cols=47 Identities=11% Similarity=0.256 Sum_probs=30.7
Q ss_pred eeeecceeeCCCCCcccccccchhhHHHhhCCcceEEEeeCcccCccccccc
Q 002276 407 KTFKFDAVFGPQADQVDVFQDTAPFANSVLDGYNVCIFAYGQTGTGKTFTME 458 (943)
Q Consensus 407 ktF~FD~VF~~~asQeeVFeev~pLV~svLdGyNvcIFAYGQTGSGKTyTM~ 458 (943)
..|+||.-+.. .+...+..+..++. ......++-||++|+||||.+.
T Consensus 17 ~~~~fd~f~~~--~n~~a~~~l~~~~~---~~~~~~l~l~Gp~G~GKThLl~ 63 (235)
T PRK08084 17 DDETFASFYPG--DNDSLLAALQNALR---QEHSGYIYLWSREGAGRSHLLH 63 (235)
T ss_pred CcCCccccccC--ccHHHHHHHHHHHh---CCCCCeEEEECCCCCCHHHHHH
Confidence 45788866644 45555554443332 2222478999999999999984
No 181
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=85.85 E-value=69 Score=42.15 Aligned_cols=9 Identities=33% Similarity=0.984 Sum_probs=4.6
Q ss_pred eeecCCCCCC
Q 002276 89 VICGGSPEIP 98 (943)
Q Consensus 89 ~~~~~~~~~~ 98 (943)
-+|+++ +-|
T Consensus 1374 ~vCG~p-~ap 1382 (1758)
T KOG0994|consen 1374 QVCGAP-GAP 1382 (1758)
T ss_pred HhcCCC-CCC
Confidence 467544 444
No 182
>PRK12377 putative replication protein; Provisional
Probab=85.85 E-value=0.34 Score=52.89 Aligned_cols=49 Identities=18% Similarity=0.268 Sum_probs=34.4
Q ss_pred ecceeeCCCCCcccccccchhhHHHhhCCcceEEEeeCcccCcccccccc
Q 002276 410 KFDAVFGPQADQVDVFQDTAPFANSVLDGYNVCIFAYGQTGTGKTFTMEG 459 (943)
Q Consensus 410 ~FD~VF~~~asQeeVFeev~pLV~svLdGyNvcIFAYGQTGSGKTyTM~G 459 (943)
+||........|..++..+..++..+..+. ..++-||++|+||||.+.+
T Consensus 72 tFdnf~~~~~~~~~a~~~a~~~a~~~~~~~-~~l~l~G~~GtGKThLa~A 120 (248)
T PRK12377 72 SFANYQVQNDGQRYALSQAKSIADELMTGC-TNFVFSGKPGTGKNHLAAA 120 (248)
T ss_pred CcCCcccCChhHHHHHHHHHHHHHHHHhcC-CeEEEECCCCCCHHHHHHH
Confidence 455544444556667776667777766654 4688899999999999854
No 183
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=85.80 E-value=0.66 Score=54.19 Aligned_cols=84 Identities=20% Similarity=0.292 Sum_probs=46.5
Q ss_pred HHHHHhHHHhhcCCEEEEEEeCCCCchhhccCCeeEEeeeccCCCeEEEEeCCcCceeeecceeeCCCCCcccccccchh
Q 002276 351 RKELYNKVLELKGNIRVFCRCRPLNSEETAAGSVMAVDFESVRDGELTVISNGAPKKTFKFDAVFGPQADQVDVFQDTAP 430 (943)
Q Consensus 351 RrkLhN~lqELKGNIRV~~RVRPl~~~E~~~g~~~~V~~~s~~d~~i~v~~~g~~~ktF~FD~VF~~~asQeeVFeev~p 430 (943)
...+..-++++-|.++|- ++.... .. ......-...|+||.-..... +.-.|..+..
T Consensus 48 ~~~i~~~~~~~~~~~~~~--~~~~~~----------~q----------~~~~~~l~~~ytFdnFv~g~~-N~~A~aa~~~ 104 (408)
T COG0593 48 LDLIKELLQELDGIIKVE--VRASAP----------AQ----------LPLPSGLNPKYTFDNFVVGPS-NRLAYAAAKA 104 (408)
T ss_pred HHHHHHHHHHhcCCccee--eccccc----------cc----------cCccccCCCCCchhheeeCCc-hHHHHHHHHH
Confidence 666777788888877666 441100 00 000011235799998665433 3333322211
Q ss_pred hHHHhhC-CcceEEEeeCcccCcccccccc
Q 002276 431 FANSVLD-GYNVCIFAYGQTGTGKTFTMEG 459 (943)
Q Consensus 431 LV~svLd-GyNvcIFAYGQTGSGKTyTM~G 459 (943)
|...-. -|| -||-||.+|+||||-|..
T Consensus 105 -va~~~g~~~n-plfi~G~~GlGKTHLl~A 132 (408)
T COG0593 105 -VAENPGGAYN-PLFIYGGVGLGKTHLLQA 132 (408)
T ss_pred -HHhccCCcCC-cEEEECCCCCCHHHHHHH
Confidence 222222 255 488999999999999953
No 184
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=85.75 E-value=0.86 Score=52.54 Aligned_cols=55 Identities=31% Similarity=0.423 Sum_probs=35.1
Q ss_pred chhhHHHhhCCcceE-EEeeCcccCccccccccCCCCCCccHHhHHHHHHHHHhhcccceeEEEEEEEEEe
Q 002276 428 TAPFANSVLDGYNVC-IFAYGQTGTGKTFTMEGTKEARGVNFRTLEELFRIIKEREKLYRYDISVSVLEVY 497 (943)
Q Consensus 428 v~pLV~svLdGyNvc-IFAYGQTGSGKTyTM~G~~e~~GIIPRal~~LF~~i~~~~~~~~y~V~VSflEIY 497 (943)
+...+..++.|.-.. ++.||.||||||.|+ +.+++.+........ .++|-+.+..
T Consensus 29 l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~--------------~~v~~~l~~~~~~~~-~~yINc~~~~ 84 (366)
T COG1474 29 LASFLAPALRGERPSNIIIYGPTGTGKTATV--------------KFVMEELEESSANVE-VVYINCLELR 84 (366)
T ss_pred HHHHHHHHhcCCCCccEEEECCCCCCHhHHH--------------HHHHHHHHhhhccCc-eEEEeeeeCC
Confidence 334455666655444 999999999999986 567776665433221 4555555543
No 185
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=85.60 E-value=0.31 Score=57.26 Aligned_cols=50 Identities=22% Similarity=0.432 Sum_probs=34.0
Q ss_pred ceeeecceeeCCCCCcccccccchhhHHHhhCCcceEEEeeCcccCccccccc
Q 002276 406 KKTFKFDAVFGPQADQVDVFQDTAPFANSVLDGYNVCIFAYGQTGTGKTFTME 458 (943)
Q Consensus 406 ~ktF~FD~VF~~~asQeeVFeev~pLV~svLdGyNvcIFAYGQTGSGKTyTM~ 458 (943)
...|+||.-+.. .++...|..+..++.. -..||. +|-||.+|+||||-|.
T Consensus 99 ~~~~tFdnFv~g-~~n~~a~~~~~~~~~~-~~~~n~-l~lyG~~G~GKTHLl~ 148 (440)
T PRK14088 99 NPDYTFENFVVG-PGNSFAYHAALEVAKN-PGRYNP-LFIYGGVGLGKTHLLQ 148 (440)
T ss_pred CCCCcccccccC-CchHHHHHHHHHHHhC-cCCCCe-EEEEcCCCCcHHHHHH
Confidence 356999987753 4455556554444433 123675 9999999999999984
No 186
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=85.57 E-value=36 Score=35.81 Aligned_cols=21 Identities=14% Similarity=0.438 Sum_probs=17.0
Q ss_pred HHHHHHhHHHHHHHHHhHHHh
Q 002276 340 LKIKFIEGTKERKELYNKVLE 360 (943)
Q Consensus 340 l~~kl~~e~~~RrkLhN~lqE 360 (943)
..+++..+-..||+.+|.|.+
T Consensus 160 ~y~~~~~~wrk~krmf~ei~d 180 (201)
T KOG4603|consen 160 EYQKYCKEWRKRKRMFREIID 180 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455778888899999999876
No 187
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=85.50 E-value=41 Score=33.40 Aligned_cols=30 Identities=17% Similarity=0.307 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 210 DYERLKMSYECQKKELTEAKRTLEELKREN 239 (943)
Q Consensus 210 e~~kL~~~~e~qk~eL~~~e~~i~eLe~en 239 (943)
+...+..++..+......++.++..+...+
T Consensus 4 e~~~l~~e~~~~~~~~~~~~~~~~~~~~dl 33 (132)
T PF07926_consen 4 ELSSLQSELQRLKEQEEDAEEQLQSLREDL 33 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555554444
No 188
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=85.44 E-value=89 Score=39.58 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 213 RLKMSYECQKKELTEAKRTLEELKRENQL 241 (943)
Q Consensus 213 kL~~~~e~qk~eL~~~e~~i~eLe~en~~ 241 (943)
.+...|..+..++..++..+.....||..
T Consensus 31 ~~~~~i~~l~~elk~~~~~~~~~~~e~~r 59 (717)
T PF09730_consen 31 YLQQRILELENELKQLRQELSNVQAENER 59 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555555543
No 189
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=85.44 E-value=85 Score=42.52 Aligned_cols=24 Identities=13% Similarity=0.095 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 214 LKMSYECQKKELTEAKRTLEELKR 237 (943)
Q Consensus 214 L~~~~e~qk~eL~~~e~~i~eLe~ 237 (943)
-...+++++.+|+.+++.+..|+.
T Consensus 228 ~~~~~~~~~~~le~l~~~~~~l~~ 251 (1353)
T TIGR02680 228 ALEQLDEYRDELERLEALERALRN 251 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555556666555555544
No 190
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=85.25 E-value=0.35 Score=55.78 Aligned_cols=51 Identities=24% Similarity=0.377 Sum_probs=31.7
Q ss_pred ceeeecceeeCCCCCcccccccchhhHHHhhCCcceEEEeeCcccCccccccc
Q 002276 406 KKTFKFDAVFGPQADQVDVFQDTAPFANSVLDGYNVCIFAYGQTGTGKTFTME 458 (943)
Q Consensus 406 ~ktF~FD~VF~~~asQeeVFeev~pLV~svLdGyNvcIFAYGQTGSGKTyTM~ 458 (943)
...|+||.-.. ...+...|..+..+...--..||. +|-||.+|+||||.+.
T Consensus 104 ~~~~tfd~fi~-g~~n~~a~~~~~~~~~~~~~~~n~-l~l~G~~G~GKThL~~ 154 (405)
T TIGR00362 104 NPKYTFDNFVV-GKSNRLAHAAALAVAENPGKAYNP-LFIYGGVGLGKTHLLH 154 (405)
T ss_pred CCCCccccccc-CCcHHHHHHHHHHHHhCcCccCCe-EEEECCCCCcHHHHHH
Confidence 35788988443 234444554444444432123454 7789999999999973
No 191
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=85.15 E-value=21 Score=45.94 Aligned_cols=62 Identities=15% Similarity=0.100 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccHHHHHHhhHhhhhhHHHHHHHHHHHHHHHH
Q 002276 238 ENQLKNKEYQETWKSLQELQNELMRKSMHVGSLAFAIEGQVKEKSRWFSSLRDLTRRLKIMK 299 (943)
Q Consensus 238 en~~K~~E~~e~~~~l~~~q~el~~~~~~v~sL~~~ie~~~~ek~kl~~~L~~L~~~l~~~k 299 (943)
++..+..+|.++.....+..+.+.....++..+.++++..++...+....|...++.+...+
T Consensus 291 ~~s~~~~~~~e~~~k~~~~~ek~~~~~~~v~~~~~~le~lk~~~~~rq~~i~~~~k~i~~~q 352 (1072)
T KOG0979|consen 291 KISQKQRELNEALAKVQEKFEKLKEIEDEVEEKKNKLESLKKAAEKRQKRIEKAKKMILDAQ 352 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555444444444554444444555555555544444444444444444444433
No 192
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=85.12 E-value=96 Score=38.92 Aligned_cols=29 Identities=10% Similarity=0.074 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhHHHh
Q 002276 332 HQVQLYEHLKIKFIEGTKERKELYNKVLE 360 (943)
Q Consensus 332 ~~~~~~e~l~~kl~~e~~~RrkLhN~lqE 360 (943)
++......|..++.....+..-|++.|+|
T Consensus 335 qL~~qVAsLQeev~sq~qEqaiLq~SLqD 363 (739)
T PF07111_consen 335 QLRGQVASLQEEVASQQQEQAILQHSLQD 363 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34444556666777777777777777765
No 193
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=84.90 E-value=1.2e+02 Score=38.16 Aligned_cols=47 Identities=17% Similarity=0.229 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 213 RLKMSYECQKKELTEAKRTLEELKRENQLKNKEYQETWKSLQELQNE 259 (943)
Q Consensus 213 kL~~~~e~qk~eL~~~e~~i~eLe~en~~K~~E~~e~~~~l~~~q~e 259 (943)
++...+...++....|-++|+.|+..+.+...++......+.....+
T Consensus 517 k~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~E 563 (786)
T PF05483_consen 517 KQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEE 563 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444455556666666655455554444444433333
No 194
>PRK05642 DNA replication initiation factor; Validated
Probab=84.87 E-value=0.4 Score=51.47 Aligned_cols=46 Identities=13% Similarity=0.471 Sum_probs=28.6
Q ss_pred eeeecceeeCCCCCcccccccchhhHHHhhC---Cc-ceEEEeeCcccCccccccc
Q 002276 407 KTFKFDAVFGPQADQVDVFQDTAPFANSVLD---GY-NVCIFAYGQTGTGKTFTME 458 (943)
Q Consensus 407 ktF~FD~VF~~~asQeeVFeev~pLV~svLd---Gy-NvcIFAYGQTGSGKTyTM~ 458 (943)
..|+||.-+... +..++ ..+....+ ++ +..++-||.+|+||||-+.
T Consensus 14 ~~~tfdnF~~~~--~~~a~----~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~ 63 (234)
T PRK05642 14 DDATFANYYPGA--NAAAL----GYVERLCEADAGWTESLIYLWGKDGVGRSHLLQ 63 (234)
T ss_pred CcccccccCcCC--hHHHH----HHHHHHhhccccCCCCeEEEECCCCCCHHHHHH
Confidence 468899887432 22222 33333322 22 2468899999999999974
No 195
>PRK10884 SH3 domain-containing protein; Provisional
Probab=84.86 E-value=11 Score=40.43 Aligned_cols=42 Identities=14% Similarity=0.125 Sum_probs=25.9
Q ss_pred ccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 204 ERGVKGDYERLKMSYECQKKELTEAKRTLEELKRENQLKNKE 245 (943)
Q Consensus 204 ~~~~~~e~~kL~~~~e~qk~eL~~~e~~i~eLe~en~~K~~E 245 (943)
...+.....+++++++.++.+|.++...+.+...+++.+..+
T Consensus 88 ~p~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~ 129 (206)
T PRK10884 88 TPSLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQ 129 (206)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 345566677777777777777777666655555555444444
No 196
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=84.83 E-value=22 Score=32.80 Aligned_cols=60 Identities=13% Similarity=0.151 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 002276 288 LRDLTRRLKIMKMEHINLFEEALAYKKCAAEISEASSTIQSKINHQVQLYEHLKIKFIEG 347 (943)
Q Consensus 288 L~~L~~~l~~~k~e~~~l~~e~~~~~~~~~~i~~~~~~lq~~i~~~~~~~e~l~~kl~~e 347 (943)
|+.++.....+-.+......+...+...+..-......|+.++-+++..+..++.+|.+|
T Consensus 6 Ld~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~kmK~~YEeE 65 (79)
T PF08581_consen 6 LDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKMKQQYEEE 65 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444443344344444444443333334457777888888888899999655
No 197
>PRK07952 DNA replication protein DnaC; Validated
Probab=84.74 E-value=0.42 Score=52.14 Aligned_cols=50 Identities=14% Similarity=0.226 Sum_probs=32.1
Q ss_pred eecceeeCCCCCcccccccchhhHHHhhCCcceEEEeeCcccCcccccccc
Q 002276 409 FKFDAVFGPQADQVDVFQDTAPFANSVLDGYNVCIFAYGQTGTGKTFTMEG 459 (943)
Q Consensus 409 F~FD~VF~~~asQeeVFeev~pLV~svLdGyNvcIFAYGQTGSGKTyTM~G 459 (943)
.+||.-......|..++..+..++.....|+ ..++-||.+|+||||.+.+
T Consensus 69 ~tFdnf~~~~~~q~~al~~a~~~~~~~~~~~-~~~~l~G~~GtGKThLa~a 118 (244)
T PRK07952 69 CSFENYRVECEGQMNALSKARQYVEEFDGNI-ASFIFSGKPGTGKNHLAAA 118 (244)
T ss_pred CccccccCCCchHHHHHHHHHHHHHhhccCC-ceEEEECCCCCCHHHHHHH
Confidence 3455433333445556666555665554443 3688999999999999854
No 198
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.73 E-value=55 Score=41.52 Aligned_cols=24 Identities=17% Similarity=0.124 Sum_probs=12.7
Q ss_pred HHHHHHhHHHHHHHHHhHHHhhcC
Q 002276 340 LKIKFIEGTKERKELYNKVLELKG 363 (943)
Q Consensus 340 l~~kl~~e~~~RrkLhN~lqELKG 363 (943)
....+.+-+..-.++.++++.+--
T Consensus 804 ~~~~l~~~q~e~~~~keq~~t~~~ 827 (970)
T KOG0946|consen 804 ESTRLQELQSELTQLKEQIQTLLE 827 (970)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555566666665543
No 199
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=84.71 E-value=0.39 Score=56.25 Aligned_cols=51 Identities=24% Similarity=0.365 Sum_probs=32.2
Q ss_pred ceeeecceeeCCCCCcccccccchhhHHHhhCCcceEEEeeCcccCccccccc
Q 002276 406 KKTFKFDAVFGPQADQVDVFQDTAPFANSVLDGYNVCIFAYGQTGTGKTFTME 458 (943)
Q Consensus 406 ~ktF~FD~VF~~~asQeeVFeev~pLV~svLdGyNvcIFAYGQTGSGKTyTM~ 458 (943)
...|+||.-... ..+...|..+..+...--..|| .+|-||++|+||||.+.
T Consensus 116 ~~~~tfd~fv~g-~~n~~a~~~~~~~~~~~~~~~~-~l~l~G~~G~GKThL~~ 166 (450)
T PRK00149 116 NPKYTFDNFVVG-KSNRLAHAAALAVAENPGKAYN-PLFIYGGVGLGKTHLLH 166 (450)
T ss_pred CCCCcccccccC-CCcHHHHHHHHHHHhCcCccCC-eEEEECCCCCCHHHHHH
Confidence 356888874432 3444455544444443223455 47889999999999984
No 200
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=84.62 E-value=1.1 Score=50.38 Aligned_cols=37 Identities=32% Similarity=0.514 Sum_probs=25.8
Q ss_pred cccccccchhhHHHhhCC-cceEEEeeCcccCcccccc
Q 002276 421 QVDVFQDTAPFANSVLDG-YNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 421 QeeVFeev~pLV~svLdG-yNvcIFAYGQTGSGKTyTM 457 (943)
.++-++.+...+..++.| ...+++-||++|+|||+++
T Consensus 20 Re~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 20 RDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVT 57 (365)
T ss_pred cHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 444444455555555544 5568999999999999986
No 201
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=84.56 E-value=72 Score=41.40 Aligned_cols=57 Identities=16% Similarity=0.278 Sum_probs=35.8
Q ss_pred ccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 204 ERGVKGDYERLKMSYECQKKELTEAKRTLEELKRENQLKNKEYQETWKSLQELQNEL 260 (943)
Q Consensus 204 ~~~~~~e~~kL~~~~e~qk~eL~~~e~~i~eLe~en~~K~~E~~e~~~~l~~~q~el 260 (943)
+.-++++++++.++++....++..++.++.....+++......+........++.++
T Consensus 631 ~~~~ee~~~~~~~~~~~~~~~~r~lee~~~k~~k~le~~~~~~~~~~~er~~~~~~~ 687 (1072)
T KOG0979|consen 631 DNRIEEEIQKLKAEIDIRSSTLRELEEKKQKERKELEEEQKKLKLLKRERTKLNSEL 687 (1072)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 345566777777777777777777777777666666555555444444444444433
No 202
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=84.44 E-value=71 Score=39.75 Aligned_cols=48 Identities=21% Similarity=0.353 Sum_probs=24.9
Q ss_pred CcchhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 206 GVKGDYERLKMSYECQKKELTEA---KRTLEELKRENQLKNKEYQETWKSL 253 (943)
Q Consensus 206 ~~~~e~~kL~~~~e~qk~eL~~~---e~~i~eLe~en~~K~~E~~e~~~~l 253 (943)
.+..+...|..+++.+..++... ...+..|..+-+.++.|++..+..+
T Consensus 84 ~Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~ 134 (617)
T PF15070_consen 84 QLQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERL 134 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666665554 2234444444455555555444333
No 203
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=84.37 E-value=6 Score=45.83 Aligned_cols=18 Identities=39% Similarity=0.648 Sum_probs=15.1
Q ss_pred ceEEEeeCcccCcccccc
Q 002276 440 NVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 440 NvcIFAYGQTGSGKTyTM 457 (943)
...|+-||++|+|||+..
T Consensus 165 p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCceEEECCCCCChHHHH
Confidence 345888999999999875
No 204
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=84.33 E-value=68 Score=40.54 Aligned_cols=27 Identities=19% Similarity=0.111 Sum_probs=16.3
Q ss_pred eCcccCccccccccCCCCCCccHHhHHH
Q 002276 446 YGQTGTGKTFTMEGTKEARGVNFRTLEE 473 (943)
Q Consensus 446 YGQTGSGKTyTM~G~~e~~GIIPRal~~ 473 (943)
-+-.--|.|.+|.+.. .+||+|-....
T Consensus 635 s~~~~~~~~~~~e~~s-ap~~~~~~~kq 661 (861)
T PF15254_consen 635 SEGPQHSNTRSMEEAS-APGIIPTLSKQ 661 (861)
T ss_pred CCCCCCCCcccccccc-CCccccccccc
Confidence 3334457777776653 37777766543
No 205
>PLN03188 kinesin-12 family protein; Provisional
Probab=84.07 E-value=1e+02 Score=41.09 Aligned_cols=17 Identities=18% Similarity=0.151 Sum_probs=9.6
Q ss_pred HHHHHHHHHhHHHhhcC
Q 002276 347 GTKERKELYNKVLELKG 363 (943)
Q Consensus 347 e~~~RrkLhN~lqELKG 363 (943)
-+.++|+..++|.-|+-
T Consensus 1234 ~~klkrkh~~e~~t~~q 1250 (1320)
T PLN03188 1234 IDKLKRKHENEISTLNQ 1250 (1320)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555555466666654
No 206
>PRK08116 hypothetical protein; Validated
Probab=84.02 E-value=0.36 Score=53.05 Aligned_cols=51 Identities=18% Similarity=0.339 Sum_probs=34.7
Q ss_pred eeecceeeCCCCCcccccccchhhHHHhhC--CcceEEEeeCcccCcccccccc
Q 002276 408 TFKFDAVFGPQADQVDVFQDTAPFANSVLD--GYNVCIFAYGQTGTGKTFTMEG 459 (943)
Q Consensus 408 tF~FD~VF~~~asQeeVFeev~pLV~svLd--GyNvcIFAYGQTGSGKTyTM~G 459 (943)
.++||.-. .+..+...|..+..++..+.+ ..|..++-||.+||||||.+..
T Consensus 81 ~~tFdnf~-~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~a 133 (268)
T PRK08116 81 NSTFENFL-FDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAAC 133 (268)
T ss_pred hcchhccc-CChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHH
Confidence 45666544 345555566666666766543 3456799999999999999843
No 207
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=83.49 E-value=80 Score=38.44 Aligned_cols=13 Identities=15% Similarity=0.261 Sum_probs=6.5
Q ss_pred ccHHhHHHHHHHH
Q 002276 466 VNFRTLEELFRII 478 (943)
Q Consensus 466 IIPRal~~LF~~i 478 (943)
|-|--+++++...
T Consensus 273 ihp~riee~~~~~ 285 (514)
T TIGR03319 273 IHPARIEEMVEKA 285 (514)
T ss_pred CCHHHHHHHHHHH
Confidence 4455555555443
No 208
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=83.25 E-value=28 Score=43.35 Aligned_cols=30 Identities=10% Similarity=0.186 Sum_probs=13.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 209 GDYERLKMSYECQKKELTEAKRTLEELKRE 238 (943)
Q Consensus 209 ~e~~kL~~~~e~qk~eL~~~e~~i~eLe~e 238 (943)
+-+.||..+++....++-.++++..-|...
T Consensus 91 d~ndklE~~Lankda~lrq~eekn~slqer 120 (916)
T KOG0249|consen 91 DLNDKLENELANKDADLRQNEEKNRSLQER 120 (916)
T ss_pred cchHHHHHHHhCcchhhchhHHhhhhhhHH
Confidence 334444444444444444444444333333
No 209
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=83.11 E-value=93 Score=35.62 Aligned_cols=35 Identities=26% Similarity=0.348 Sum_probs=21.9
Q ss_pred cCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 205 RGVKGDYERLKMSYECQKKELTEAKRTLEELKREN 239 (943)
Q Consensus 205 ~~~~~e~~kL~~~~e~qk~eL~~~e~~i~eLe~en 239 (943)
..+...+.-|.++...++.++...+.....|..+|
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~ 57 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEEN 57 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555666666666666666666666666666
No 210
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=83.03 E-value=84 Score=35.74 Aligned_cols=42 Identities=26% Similarity=0.445 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 221 QKKELTEAKRTLEELKRENQLKNKEYQETWKSLQELQNELMR 262 (943)
Q Consensus 221 qk~eL~~~e~~i~eLe~en~~K~~E~~e~~~~l~~~q~el~~ 262 (943)
++.+++.++-.|..++..++.|-..|-+....+.+.+.+|.+
T Consensus 4 Lq~eia~LrlEidtik~q~qekE~ky~ediei~Kekn~~Lqk 45 (305)
T PF14915_consen 4 LQDEIAMLRLEIDTIKNQNQEKEKKYLEDIEILKEKNDDLQK 45 (305)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555555555555555555444
No 211
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=83.00 E-value=0.47 Score=56.00 Aligned_cols=50 Identities=22% Similarity=0.371 Sum_probs=32.1
Q ss_pred eeecceeeCCCCCcccccccchhhHHHhhCCcceEEEeeCcccCcccccccc
Q 002276 408 TFKFDAVFGPQADQVDVFQDTAPFANSVLDGYNVCIFAYGQTGTGKTFTMEG 459 (943)
Q Consensus 408 tF~FD~VF~~~asQeeVFeev~pLV~svLdGyNvcIFAYGQTGSGKTyTM~G 459 (943)
.|+||.-+... ++...|..+..++..--..|| .+|-||.+|+||||.|..
T Consensus 111 ~~tFdnFv~g~-~n~~A~~aa~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~A 160 (450)
T PRK14087 111 ENTFENFVIGS-SNEQAFIAVQTVSKNPGISYN-PLFIYGESGMGKTHLLKA 160 (450)
T ss_pred ccchhcccCCC-cHHHHHHHHHHHHhCcCcccC-ceEEECCCCCcHHHHHHH
Confidence 58999877544 445555444344332111355 488999999999999843
No 212
>PRK09087 hypothetical protein; Validated
Probab=82.99 E-value=0.53 Score=50.45 Aligned_cols=47 Identities=13% Similarity=0.151 Sum_probs=31.4
Q ss_pred eeeecceeeCCCCCcccccccchhhHHHhhCCcceEEEeeCcccCccccccc
Q 002276 407 KTFKFDAVFGPQADQVDVFQDTAPFANSVLDGYNVCIFAYGQTGTGKTFTME 458 (943)
Q Consensus 407 ktF~FD~VF~~~asQeeVFeev~pLV~svLdGyNvcIFAYGQTGSGKTyTM~ 458 (943)
..|+||.-+...+. ..+|.. +.....-.|..++-||.+||||||-+.
T Consensus 16 ~~~~~~~Fi~~~~N-~~a~~~----l~~~~~~~~~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 16 PAYGRDDLLVTESN-RAAVSL----VDHWPNWPSPVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CCCChhceeecCch-HHHHHH----HHhcccCCCCeEEEECCCCCCHHHHHH
Confidence 46889988864433 345653 333222235568999999999999985
No 213
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=82.96 E-value=0.55 Score=48.94 Aligned_cols=45 Identities=16% Similarity=0.413 Sum_probs=30.3
Q ss_pred eeecceeeCCCCCcccccccchhhHHHhhCCcceEEEeeCcccCcccccc
Q 002276 408 TFKFDAVFGPQADQVDVFQDTAPFANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 408 tF~FD~VF~~~asQeeVFeev~pLV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
.|+||..... .+..+++.+..++ ..+....|+-||.+|+||||..
T Consensus 11 ~~~~~~~~~~--~~~~~~~~l~~~~---~~~~~~~lll~G~~G~GKT~la 55 (226)
T TIGR03420 11 DPTFDNFYAG--GNAELLAALRQLA---AGKGDRFLYLWGESGSGKSHLL 55 (226)
T ss_pred chhhcCcCcC--CcHHHHHHHHHHH---hcCCCCeEEEECCCCCCHHHHH
Confidence 4777776632 3444444444332 2456778999999999999997
No 214
>PF13514 AAA_27: AAA domain
Probab=82.91 E-value=93 Score=41.18 Aligned_cols=36 Identities=19% Similarity=0.174 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 283 RWFSSLRDLTRRLKIMKMEHINLFEEALAYKKCAAE 318 (943)
Q Consensus 283 kl~~~L~~L~~~l~~~k~e~~~l~~e~~~~~~~~~~ 318 (943)
.+...+..++..+..+..+...+..+...++..+..
T Consensus 893 ~l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~ 928 (1111)
T PF13514_consen 893 ELEAELEELEEELEELEEELEELQEERAELEQELEA 928 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555444444433
No 215
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=82.86 E-value=15 Score=38.64 Aligned_cols=46 Identities=22% Similarity=0.158 Sum_probs=0.7
Q ss_pred cCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 205 RGVKGDYERLKMSYECQKKELTEAKRTLEELKRENQLKNKEYQETW 250 (943)
Q Consensus 205 ~~~~~e~~kL~~~~e~qk~eL~~~e~~i~eLe~en~~K~~E~~e~~ 250 (943)
..++....++..+...+.+.-.++...+..+..+++.+..++...-
T Consensus 70 ~~le~~~~~l~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~ 115 (194)
T PF08614_consen 70 SSLEQKLAKLQEELAELYRSKGELAQQLVELNDELQELEKELSEKE 115 (194)
T ss_dssp --------------------------------------------HH
T ss_pred cccccccccccccccccccccccccccccccccccchhhhhHHHHH
Confidence 3345556666777777777766666666666666655544444333
No 216
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=82.84 E-value=98 Score=35.73 Aligned_cols=21 Identities=29% Similarity=0.501 Sum_probs=13.3
Q ss_pred HhHHHHHHHHHhhcccceeEEEEEEEEEe
Q 002276 469 RTLEELFRIIKEREKLYRYDISVSVLEVY 497 (943)
Q Consensus 469 Ral~~LF~~i~~~~~~~~y~V~VSflEIY 497 (943)
.-++.||+.+.+.. .+++=||
T Consensus 283 LdcRrLfDsLreEn--------lgmlfVY 303 (401)
T PF06785_consen 283 LDCRRLFDSLREEN--------LGMLFVY 303 (401)
T ss_pred HHHHHHHhhhcccc--------cceEEEe
Confidence 45568888776543 3566667
No 217
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=82.68 E-value=74 Score=41.55 Aligned_cols=17 Identities=35% Similarity=0.516 Sum_probs=11.5
Q ss_pred EeeCcccCccccccccC
Q 002276 444 FAYGQTGTGKTFTMEGT 460 (943)
Q Consensus 444 FAYGQTGSGKTyTM~G~ 460 (943)
+|||---=+|+-||-|+
T Consensus 616 l~y~~~~r~k~valdGt 632 (1141)
T KOG0018|consen 616 LAYGGEIRFKVVALDGT 632 (1141)
T ss_pred hhhcccccceEEEeeee
Confidence 66766556777777765
No 218
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=82.68 E-value=55 Score=36.45 Aligned_cols=13 Identities=46% Similarity=0.624 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 002276 224 ELTEAKRTLEELK 236 (943)
Q Consensus 224 eL~~~e~~i~eLe 236 (943)
+|++.+.+|+++.
T Consensus 185 ele~tk~Klee~Q 197 (330)
T KOG2991|consen 185 ELEQTKDKLEEAQ 197 (330)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 219
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=82.39 E-value=33 Score=40.71 Aligned_cols=36 Identities=17% Similarity=0.217 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 283 RWFSSLRDLTRRLKIMKMEHINLFEEALAYKKCAAE 318 (943)
Q Consensus 283 kl~~~L~~L~~~l~~~k~e~~~l~~e~~~~~~~~~~ 318 (943)
++..++..++.+++..+.+...|.+........+.+
T Consensus 386 q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~ 421 (493)
T KOG0804|consen 386 QLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKE 421 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 445555555555555555545554444443333333
No 220
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=82.37 E-value=1.3e+02 Score=37.72 Aligned_cols=41 Identities=27% Similarity=0.413 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 680 QSKRMEDTIHGLDLKLKDKDLKIKSLQDKVKELETQLLVER 720 (943)
Q Consensus 680 q~~~lE~~i~~l~~kl~e~d~~i~~LqekikeLE~qL~~er 720 (943)
+++.+++.+..+...+..+..-|..|+.+.+.|.+++..+.
T Consensus 588 q~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~aE~ 628 (786)
T PF05483_consen 588 QMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITAES 628 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33444555556666666666666667777777766665553
No 221
>PRK10884 SH3 domain-containing protein; Provisional
Probab=82.35 E-value=14 Score=39.61 Aligned_cols=38 Identities=11% Similarity=0.164 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 212 ERLKMSYECQKKELTEAKRTLEELKRENQLKNKEYQET 249 (943)
Q Consensus 212 ~kL~~~~e~qk~eL~~~e~~i~eLe~en~~K~~E~~e~ 249 (943)
--+...+..++.|+++++.++.++..+......++++.
T Consensus 89 p~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~ 126 (206)
T PRK10884 89 PSLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQK 126 (206)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45666677777777777777777766655444444433
No 222
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.34 E-value=76 Score=37.91 Aligned_cols=16 Identities=44% Similarity=0.719 Sum_probs=11.4
Q ss_pred HHHHHhHHHhhcCCEE
Q 002276 351 RKELYNKVLELKGNIR 366 (943)
Q Consensus 351 RrkLhN~lqELKGNIR 366 (943)
|+.+.-.+.|+-||||
T Consensus 384 rk~ytqrikEi~gniR 399 (521)
T KOG1937|consen 384 RKVYTQRIKEIDGNIR 399 (521)
T ss_pred HHHHHHHHHHHHhHHH
Confidence 6666677777777765
No 223
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=82.18 E-value=1.1e+02 Score=35.77 Aligned_cols=30 Identities=13% Similarity=0.200 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 210 DYERLKMSYECQKKELTEAKRTLEELKREN 239 (943)
Q Consensus 210 e~~kL~~~~e~qk~eL~~~e~~i~eLe~en 239 (943)
-..-|...++.+++++...+.++++-+.+|
T Consensus 172 ~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~ 201 (444)
T TIGR03017 172 AALWFVQQIAALREDLARAQSKLSAYQQEK 201 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344455555555555555555555555554
No 224
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=82.06 E-value=52 Score=41.53 Aligned_cols=159 Identities=18% Similarity=0.217 Sum_probs=78.4
Q ss_pred ccccccCccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHH
Q 002276 197 ESTKDSGERGVKGDYERLKMSYECQKKELTEAKRTLEELKREN----------------------QLKNKEYQETWKSLQ 254 (943)
Q Consensus 197 ~~~~~~~~~~~~~e~~kL~~~~e~qk~eL~~~e~~i~eLe~en----------------------~~K~~E~~e~~~~l~ 254 (943)
.++.-+-|..++ .+-|+++.-+|+..|.-+..++.|-++-- +....|.......++
T Consensus 377 g~tniq~EIALA--~QplrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k~~e~lq 454 (861)
T PF15254_consen 377 GSTNIQVEIALA--MQPLRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQSLNMSLQNQLQESLKSQELLQ 454 (861)
T ss_pred ccccchhhhHhh--hhhhhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 445555555555 77788888888888877776666644322 333344444444444
Q ss_pred HHHHHHHHhhhhhccHHHHHHhhHhhhhhHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 255 ELQNELMRKSMHVGSLAFAIEGQVKEKSRWFSSLR-----------DLTRRLKIMKMEHINLFEEALAYKKCAAEISEAS 323 (943)
Q Consensus 255 ~~q~el~~~~~~v~sL~~~ie~~~~ek~kl~~~L~-----------~L~~~l~~~k~e~~~l~~e~~~~~~~~~~i~~~~ 323 (943)
.++++|.+. |+.++.|..++...+. +..-+...+|.|....+.++..++-.++..+...
T Consensus 455 ~kneellk~----------~e~q~~Enk~~~~~~~ekd~~l~~~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN 524 (861)
T PF15254_consen 455 SKNEELLKV----------IENQKEENKRLRKMFQEKDQELLENKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKEN 524 (861)
T ss_pred HhHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhh
Confidence 455555444 3333333333333322 2233333444554555555555555555555444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHhhcCCEEE-EEEeCCC
Q 002276 324 STIQSKINHQVQLYEHLKIKFIEGTKERKELYNKVLELKGNIRV-FCRCRPL 374 (943)
Q Consensus 324 ~~lq~~i~~~~~~~e~l~~kl~~e~~~RrkLhN~lqELKGNIRV-~~RVRPl 374 (943)
..|.-.+.+..+++..|. .+-|-|+|..-.+-.-+.| -+|++|=
T Consensus 525 ~iL~itlrQrDaEi~RL~-------eLtR~LQ~Sma~lL~dls~D~ar~Kp~ 569 (861)
T PF15254_consen 525 QILGITLRQRDAEIERLR-------ELTRTLQNSMAKLLSDLSVDSARCKPG 569 (861)
T ss_pred hHhhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhhccccccccCCc
Confidence 444333333333333222 3445555555444443333 4678883
No 225
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.90 E-value=1.2e+02 Score=36.23 Aligned_cols=36 Identities=14% Similarity=0.126 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHhhcC
Q 002276 328 SKINHQVQLYEHLKIKFIEGTKERKELYNKVLELKG 363 (943)
Q Consensus 328 ~~i~~~~~~~e~l~~kl~~e~~~RrkLhN~lqELKG 363 (943)
.+|.++++.++.+.++....+.++.+|+|+++-+-.
T Consensus 345 ~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~ 380 (521)
T KOG1937|consen 345 RRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPD 380 (521)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCc
Confidence 456666677777777888888999999999987644
No 226
>PRK08727 hypothetical protein; Validated
Probab=81.74 E-value=0.76 Score=49.26 Aligned_cols=45 Identities=20% Similarity=0.330 Sum_probs=27.1
Q ss_pred eeeecceeeCCCCCcccccccchhhHHHhhCCcc-eEEEeeCcccCccccccc
Q 002276 407 KTFKFDAVFGPQADQVDVFQDTAPFANSVLDGYN-VCIFAYGQTGTGKTFTME 458 (943)
Q Consensus 407 ktF~FD~VF~~~asQeeVFeev~pLV~svLdGyN-vcIFAYGQTGSGKTyTM~ 458 (943)
..|+||.-+...+ + ... .+..+..|+. -.|+-||++||||||-+.
T Consensus 14 ~~~~f~~f~~~~~-n--~~~----~~~~~~~~~~~~~l~l~G~~G~GKThL~~ 59 (233)
T PRK08727 14 SDQRFDSYIAAPD-G--LLA----QLQALAAGQSSDWLYLSGPAGTGKTHLAL 59 (233)
T ss_pred CcCChhhccCCcH-H--HHH----HHHHHHhccCCCeEEEECCCCCCHHHHHH
Confidence 3578888664333 2 111 1222222332 459999999999999874
No 227
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=81.65 E-value=36 Score=33.78 Aligned_cols=23 Identities=22% Similarity=0.200 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002276 217 SYECQKKELTEAKRTLEELKREN 239 (943)
Q Consensus 217 ~~e~qk~eL~~~e~~i~eLe~en 239 (943)
.++.+..++..++..+..++.++
T Consensus 17 ~ve~L~s~lr~~E~E~~~l~~el 39 (120)
T PF12325_consen 17 LVERLQSQLRRLEGELASLQEEL 39 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555444444444443
No 228
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=81.56 E-value=0.57 Score=42.95 Aligned_cols=17 Identities=29% Similarity=0.386 Sum_probs=14.9
Q ss_pred EEeeCcccCcccccccc
Q 002276 443 IFAYGQTGTGKTFTMEG 459 (943)
Q Consensus 443 IFAYGQTGSGKTyTM~G 459 (943)
++.+|.||||||++|..
T Consensus 3 ~~i~~~~G~GKT~~~~~ 19 (144)
T cd00046 3 VLLAAPTGSGKTLAALL 19 (144)
T ss_pred EEEECCCCCchhHHHHH
Confidence 57789999999999865
No 229
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=81.45 E-value=83 Score=33.96 Aligned_cols=40 Identities=10% Similarity=0.206 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHH
Q 002276 320 SEASSTIQSKINHQVQLYEHLKIKFIEGTKERKELYNKVL 359 (943)
Q Consensus 320 ~~~~~~lq~~i~~~~~~~e~l~~kl~~e~~~RrkLhN~lq 359 (943)
......++..-.........|..-|.+--...+.|...|.
T Consensus 162 e~ER~~W~eEKekVi~YQkQLQ~nYvqMy~rn~~LE~~l~ 201 (202)
T PF06818_consen 162 EQERRTWQEEKEKVIRYQKQLQQNYVQMYQRNQALERELR 201 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333444443333333444455556655566666655543
No 230
>PRK00106 hypothetical protein; Provisional
Probab=81.06 E-value=1e+02 Score=37.83 Aligned_cols=15 Identities=20% Similarity=0.246 Sum_probs=9.2
Q ss_pred CccHHhHHHHHHHHH
Q 002276 465 GVNFRTLEELFRIIK 479 (943)
Q Consensus 465 GIIPRal~~LF~~i~ 479 (943)
-|-|--+++++....
T Consensus 293 rIhp~rIEe~v~k~~ 307 (535)
T PRK00106 293 RIHPARIEELVEKNR 307 (535)
T ss_pred CcCHHHHHHHHHHHH
Confidence 366666676666543
No 231
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=80.77 E-value=62 Score=41.26 Aligned_cols=47 Identities=28% Similarity=0.326 Sum_probs=25.6
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 002276 206 GVKGDYERLKMSYECQKKELTEAKRTLEELKREN---QLKNKEYQETWKS 252 (943)
Q Consensus 206 ~~~~e~~kL~~~~e~qk~eL~~~e~~i~eLe~en---~~K~~E~~e~~~~ 252 (943)
++.++.+++..+.+.+...|..+..+++.++.+. +.+..+++..+..
T Consensus 593 el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~ 642 (769)
T PF05911_consen 593 ELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELES 642 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666666666666666665554 3444444444333
No 232
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=80.70 E-value=1.7e+02 Score=36.91 Aligned_cols=26 Identities=19% Similarity=0.137 Sum_probs=13.9
Q ss_pred CCceeeecC------CCCCCCCC--CCCChhhhc
Q 002276 85 SPDLVICGG------SPEIPKSS--YGESPEFSE 110 (943)
Q Consensus 85 ~~~~~~~~~------~~~~~~~~--~~~~~~~~~ 110 (943)
+-|-+-|.. +||.|... -++-|...+
T Consensus 116 ~~ds~~~~s~~~~a~~~~sP~~~e~~~~vP~v~~ 149 (961)
T KOG4673|consen 116 SVDSNKETSVRREADQADSPEVTETVVLVPKVDE 149 (961)
T ss_pred hhhhhhhhcccccccCCCCCCCccccCcCcccch
Confidence 445556655 66666553 445555444
No 233
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=80.43 E-value=0.83 Score=48.13 Aligned_cols=47 Identities=13% Similarity=0.330 Sum_probs=29.4
Q ss_pred eeeecceeeCCCCCcccccccchhhHHHhhCCcceEEEeeCcccCcccccc
Q 002276 407 KTFKFDAVFGPQADQVDVFQDTAPFANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 407 ktF~FD~VF~~~asQeeVFeev~pLV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
..|+||..++.. ...++..+..++.. .+.+..++-||.+||||||.+
T Consensus 13 ~~~~~d~f~~~~--~~~~~~~l~~~~~~--~~~~~~~~l~G~~G~GKT~La 59 (227)
T PRK08903 13 PPPTFDNFVAGE--NAELVARLRELAAG--PVADRFFYLWGEAGSGRSHLL 59 (227)
T ss_pred ChhhhcccccCC--cHHHHHHHHHHHhc--cCCCCeEEEECCCCCCHHHHH
Confidence 458899887322 22333333333321 234567899999999999987
No 234
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=80.14 E-value=38 Score=33.56 Aligned_cols=39 Identities=21% Similarity=0.197 Sum_probs=16.5
Q ss_pred HHHHHHHhhhhhccHHHHHHhhHhhhhhHHHHHHHHHHH
Q 002276 256 LQNELMRKSMHVGSLAFAIEGQVKEKSRWFSSLRDLTRR 294 (943)
Q Consensus 256 ~q~el~~~~~~v~sL~~~ie~~~~ek~kl~~~L~~L~~~ 294 (943)
++..+.+.-.++.+++.+++.....+..+...|-.|...
T Consensus 21 L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~ 59 (120)
T PF12325_consen 21 LQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEE 59 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444433444444444444444444444444433333
No 235
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=80.09 E-value=29 Score=39.49 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 213 RLKMSYECQKKELTEAKRTLEELK 236 (943)
Q Consensus 213 kL~~~~e~qk~eL~~~e~~i~eLe 236 (943)
.+...++...+|.+.+..-+.+++
T Consensus 13 ~l~~~~~~~~~E~~~Y~~fL~~l~ 36 (314)
T PF04111_consen 13 QLDKQLEQAEKERDTYQEFLKKLE 36 (314)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443
No 236
>PRK10865 protein disaggregation chaperone; Provisional
Probab=79.62 E-value=7.2 Score=49.86 Aligned_cols=45 Identities=22% Similarity=0.223 Sum_probs=28.3
Q ss_pred eecceeeCCCCCcccccccchhhHHHhhCCcc------eEEEeeCcccCcccccc
Q 002276 409 FKFDAVFGPQADQVDVFQDTAPFANSVLDGYN------VCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 409 F~FD~VF~~~asQeeVFeev~pLV~svLdGyN------vcIFAYGQTGSGKTyTM 457 (943)
.-+.+|++ |...-..+...|..+..|.+ +.++-+|+||+|||++.
T Consensus 565 ~l~~~viG----Q~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA 615 (857)
T PRK10865 565 ELHHRVIG----QNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELC 615 (857)
T ss_pred HhCCeEeC----CHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHH
Confidence 34666776 44444444444444443432 57788899999999986
No 237
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=79.42 E-value=72 Score=35.12 Aligned_cols=10 Identities=20% Similarity=0.179 Sum_probs=3.3
Q ss_pred HHHHHHHHHH
Q 002276 284 WFSSLRDLTR 293 (943)
Q Consensus 284 l~~~L~~L~~ 293 (943)
+...+..+..
T Consensus 80 Le~e~~e~~~ 89 (246)
T PF00769_consen 80 LEQELREAEA 89 (246)
T ss_dssp -HHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 238
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=79.09 E-value=1 Score=51.13 Aligned_cols=34 Identities=29% Similarity=0.411 Sum_probs=23.4
Q ss_pred ccccchhhHHHhhC-CcceEEEeeCcccCcccccc
Q 002276 424 VFQDTAPFANSVLD-GYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 424 VFeev~pLV~svLd-GyNvcIFAYGQTGSGKTyTM 457 (943)
-++.+...+..++. +...+++-||++|+|||+++
T Consensus 38 e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 38 QIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTV 72 (394)
T ss_pred HHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHH
Confidence 33444445555554 44567899999999999986
No 239
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=78.62 E-value=2e+02 Score=39.11 Aligned_cols=17 Identities=29% Similarity=0.419 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002276 223 KELTEAKRTLEELKREN 239 (943)
Q Consensus 223 ~eL~~~e~~i~eLe~en 239 (943)
..+.+++.++++++...
T Consensus 230 ~~~~~~~~~le~l~~~~ 246 (1353)
T TIGR02680 230 EQLDEYRDELERLEALE 246 (1353)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444555555555544
No 240
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=78.61 E-value=1.8e+02 Score=36.14 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=15.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHH
Q 002276 207 VKGDYERLKMSYECQKKELTEAK 229 (943)
Q Consensus 207 ~~~e~~kL~~~~e~qk~eL~~~e 229 (943)
+.+|+++|+...+....++...+
T Consensus 119 ~~~e~~~lk~~lee~~~el~~~k 141 (629)
T KOG0963|consen 119 ASEENEELKEELEEVNNELADLK 141 (629)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhh
Confidence 66777777777777766666553
No 241
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=78.59 E-value=0.94 Score=44.68 Aligned_cols=20 Identities=25% Similarity=0.331 Sum_probs=16.0
Q ss_pred ceEEEeeCcccCcccccccc
Q 002276 440 NVCIFAYGQTGTGKTFTMEG 459 (943)
Q Consensus 440 NvcIFAYGQTGSGKTyTM~G 459 (943)
+.-++..+.||||||++|..
T Consensus 25 ~~~~ll~~~tGsGKT~~~~~ 44 (184)
T PF04851_consen 25 ERRVLLNAPTGSGKTIIALA 44 (184)
T ss_dssp CSEEEEEESTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCcChhhhh
Confidence 45566677999999999964
No 242
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=78.53 E-value=1.6e+02 Score=35.47 Aligned_cols=13 Identities=38% Similarity=0.785 Sum_probs=8.9
Q ss_pred ecCCCceeeecCC
Q 002276 82 SLTSPDLVICGGS 94 (943)
Q Consensus 82 ~~~~~~~~~~~~~ 94 (943)
+--||-|++|.|-
T Consensus 167 ~prSP~L~h~~gE 179 (527)
T PF15066_consen 167 PPRSPPLIHCSGE 179 (527)
T ss_pred CCCCCCceecCCC
Confidence 4567888888653
No 243
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=78.46 E-value=17 Score=38.49 Aligned_cols=54 Identities=19% Similarity=0.259 Sum_probs=31.5
Q ss_pred hHhhhhcccccccccccccCccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 184 LLEAKRFSQLEECESTKDSGERGVKGDYERLKMSYECQKKELTEAKRTLEELKR 237 (943)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~kL~~~~e~qk~eL~~~e~~i~eLe~ 237 (943)
|..+-+.|...+-=+-.+..-......+.+|..+++.++.++.+++.+|++++.
T Consensus 44 lV~~EKiGssn~YWsFps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~ 97 (188)
T PF03962_consen 44 LVHVEKIGSSNYYWSFPSQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKK 97 (188)
T ss_pred cchhhhccCeeEEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555666677766655555555555555555555555555555555555555543
No 244
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=78.45 E-value=2 Score=54.59 Aligned_cols=31 Identities=35% Similarity=0.530 Sum_probs=23.3
Q ss_pred cchhhHHHhhC--CcceEEEeeCcccCcccccc
Q 002276 427 DTAPFANSVLD--GYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 427 ev~pLV~svLd--GyNvcIFAYGQTGSGKTyTM 457 (943)
.+..++..++. |-+.|||-||.+|+|||.|+
T Consensus 766 eLasfL~paIkgsgpnnvLYIyG~PGTGKTATV 798 (1164)
T PTZ00112 766 EVHGFLESGIKQSGSNQILYISGMPGTGKTATV 798 (1164)
T ss_pred HHHHHHHHHHhcCCCCceEEEECCCCCCHHHHH
Confidence 34455666664 45567899999999999997
No 245
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=78.42 E-value=2e+02 Score=38.35 Aligned_cols=18 Identities=33% Similarity=0.167 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002276 211 YERLKMSYECQKKELTEA 228 (943)
Q Consensus 211 ~~kL~~~~e~qk~eL~~~ 228 (943)
.++++...|..++-|++.
T Consensus 1558 A~~v~~~ae~V~eaL~~A 1575 (1758)
T KOG0994|consen 1558 AEDVKGQAEDVVEALEEA 1575 (1758)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444443
No 246
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=78.34 E-value=0.97 Score=49.45 Aligned_cols=49 Identities=20% Similarity=0.167 Sum_probs=34.2
Q ss_pred eecceeeCCCCCcccccccchhhHHHhhCCcceEEEeeCcccCcccccccc
Q 002276 409 FKFDAVFGPQADQVDVFQDTAPFANSVLDGYNVCIFAYGQTGTGKTFTMEG 459 (943)
Q Consensus 409 F~FD~VF~~~asQeeVFeev~pLV~svLdGyNvcIFAYGQTGSGKTyTM~G 459 (943)
|.|..+-.....+..+|..+..++..+-.|.| ++-||++|+||||-..+
T Consensus 76 ~~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~n--l~l~G~~G~GKThLa~A 124 (254)
T COG1484 76 FEEFDFEFQPGIDKKALEDLASLVEFFERGEN--LVLLGPPGVGKTHLAIA 124 (254)
T ss_pred cccccccCCcchhHHHHHHHHHHHHHhccCCc--EEEECCCCCcHHHHHHH
Confidence 33333333455677888887777777665555 56799999999998754
No 247
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=78.16 E-value=1.2e+02 Score=36.56 Aligned_cols=35 Identities=23% Similarity=0.424 Sum_probs=22.6
Q ss_pred cCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 205 RGVKGDYERLKMSYECQKKELTEAKRTLEELKREN 239 (943)
Q Consensus 205 ~~~~~e~~kL~~~~e~qk~eL~~~e~~i~eLe~en 239 (943)
.+--+..++|..+++.-.+|+..++.++.+|..+.
T Consensus 326 ~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~ 360 (622)
T COG5185 326 QEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQL 360 (622)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 34456666666666666666666666666666655
No 248
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=78.09 E-value=99 Score=32.88 Aligned_cols=40 Identities=15% Similarity=0.189 Sum_probs=21.5
Q ss_pred ccHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 268 GSLAFAIEGQVKEKSRWFSSLRDLTRRLKIMKMEHINLFE 307 (943)
Q Consensus 268 ~sL~~~ie~~~~ek~kl~~~L~~L~~~l~~~k~e~~~l~~ 307 (943)
..++..+........++...|..|+.++..++.....+..
T Consensus 101 ~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~a 140 (221)
T PF04012_consen 101 ERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKA 140 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444455666666666666666655444433
No 249
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=77.89 E-value=85 Score=41.01 Aligned_cols=40 Identities=15% Similarity=0.129 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 284 WFSSLRDLTRRLKIMKMEHINLFEEALAYKKCAAEISEAS 323 (943)
Q Consensus 284 l~~~L~~L~~~l~~~k~e~~~l~~e~~~~~~~~~~i~~~~ 323 (943)
....|...+..+...+.......+++..+.+.+..+....
T Consensus 301 ~k~rl~~~~k~i~~~kk~~~~~~~~ie~~ek~l~av~~~~ 340 (1141)
T KOG0018|consen 301 LKKRLEEIEKDIETAKKDYRALKETIERLEKELKAVEGAK 340 (1141)
T ss_pred chhHHHHhhhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555554444433
No 250
>PRK06526 transposase; Provisional
Probab=77.42 E-value=0.85 Score=49.93 Aligned_cols=21 Identities=38% Similarity=0.488 Sum_probs=17.4
Q ss_pred CCcceEEEeeCcccCcccccccc
Q 002276 437 DGYNVCIFAYGQTGTGKTFTMEG 459 (943)
Q Consensus 437 dGyNvcIFAYGQTGSGKTyTM~G 459 (943)
.+.| |+.||++|+||||.+.+
T Consensus 97 ~~~n--lll~Gp~GtGKThLa~a 117 (254)
T PRK06526 97 GKEN--VVFLGPPGTGKTHLAIG 117 (254)
T ss_pred cCce--EEEEeCCCCchHHHHHH
Confidence 3555 78999999999999865
No 251
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=77.12 E-value=1.5 Score=40.73 Aligned_cols=24 Identities=29% Similarity=0.308 Sum_probs=17.7
Q ss_pred HhhCCcceEEEeeCcccCcccccc
Q 002276 434 SVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 434 svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
.+.......++-+|.+|+|||+.+
T Consensus 13 ~~~~~~~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 13 ALELPPPKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred HHhCCCCCeEEEECCCCCCHHHHH
Confidence 333334556888999999999876
No 252
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=77.03 E-value=27 Score=42.87 Aligned_cols=96 Identities=21% Similarity=0.259 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccHHHHHHhhHhhhhhHHHHHHHHHHHH
Q 002276 216 MSYECQKKELTEAKRTLEELKRENQLKNKEYQETWKSLQELQNELMRKSMHVGSLAFAIEGQVKEKSRWFSSLRDLTRRL 295 (943)
Q Consensus 216 ~~~e~qk~eL~~~e~~i~eLe~en~~K~~E~~e~~~~l~~~q~el~~~~~~v~sL~~~ie~~~~ek~kl~~~L~~L~~~l 295 (943)
-++....+++..++++++.|+.+|..-..+++++...+..+..+|.+- ..++. .+......++.+...+
T Consensus 415 ~ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~-------~r~~~----~~~~~~rei~~~~~~I 483 (652)
T COG2433 415 REITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERF-------RREVR----DKVRKDREIRARDRRI 483 (652)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH----HHHhhhHHHHHHHHHH
Confidence 334455555555666666666666544444444443333333333221 11111 1222334455555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 296 KIMKMEHINLFEEALAYKKCAAEISEA 322 (943)
Q Consensus 296 ~~~k~e~~~l~~e~~~~~~~~~~i~~~ 322 (943)
..++.+...-...++.++..++.+.++
T Consensus 484 ~~L~~~L~e~~~~ve~L~~~l~~l~k~ 510 (652)
T COG2433 484 ERLEKELEEKKKRVEELERKLAELRKM 510 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555544444444455555555444433
No 253
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.95 E-value=1.3e+02 Score=33.72 Aligned_cols=33 Identities=15% Similarity=0.365 Sum_probs=16.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 207 VKGDYERLKMSYECQKKELTEAKRTLEELKREN 239 (943)
Q Consensus 207 ~~~e~~kL~~~~e~qk~eL~~~e~~i~eLe~en 239 (943)
+..+-..+..+++++..++.++..++.+++.++
T Consensus 43 ~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i 75 (265)
T COG3883 43 LQKEKKNIQNEIESLDNQIEEIQSKIDELQKEI 75 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555555555555555544
No 254
>PF14992 TMCO5: TMCO5 family
Probab=76.92 E-value=1.3e+02 Score=33.97 Aligned_cols=33 Identities=21% Similarity=0.360 Sum_probs=18.3
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 207 VKGDYERLKMSYECQKKELTEAKRTLEELKREN 239 (943)
Q Consensus 207 ~~~e~~kL~~~~e~qk~eL~~~e~~i~eLe~en 239 (943)
++++-++|-.+.+.+-....+.+..++.|++|+
T Consensus 9 le~d~Q~ldE~Nq~lL~ki~~~E~~iq~Le~Ei 41 (280)
T PF14992_consen 9 LEKDEQRLDEANQSLLQKIQEKEGAIQSLEREI 41 (280)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555555
No 255
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=76.83 E-value=28 Score=43.70 Aligned_cols=36 Identities=8% Similarity=0.044 Sum_probs=17.2
Q ss_pred ccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 204 ERGVKGDYERLKMSYECQKKELTEAKRTLEELKREN 239 (943)
Q Consensus 204 ~~~~~~e~~kL~~~~e~qk~eL~~~e~~i~eLe~en 239 (943)
+..++...+...+..+.+.+++.++++++++.+.+.
T Consensus 182 ~~~~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l 217 (754)
T TIGR01005 182 AGQGAAKSESNTAAADFLAPEIADLSKQSRDAEAEV 217 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444455555555555555544444433
No 256
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=76.49 E-value=0.85 Score=43.10 Aligned_cols=18 Identities=28% Similarity=0.440 Sum_probs=13.2
Q ss_pred ceEEEeeCcccCcccccc
Q 002276 440 NVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 440 NvcIFAYGQTGSGKTyTM 457 (943)
+.+++.||.+|+|||.++
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 457899999999999986
No 257
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=76.43 E-value=98 Score=37.83 Aligned_cols=18 Identities=17% Similarity=0.224 Sum_probs=10.6
Q ss_pred CCCccHHhHHHHHHHHHh
Q 002276 463 ARGVNFRTLEELFRIIKE 480 (943)
Q Consensus 463 ~~GIIPRal~~LF~~i~~ 480 (943)
..|+=+.+...+...+..
T Consensus 472 ~~gld~~~~~~~~~~l~~ 489 (563)
T TIGR00634 472 DVGVSGETAQAIAKKLAQ 489 (563)
T ss_pred CCCCCHHHHHHHHHHHHH
Confidence 446666666666665554
No 258
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=76.39 E-value=1 Score=47.45 Aligned_cols=16 Identities=44% Similarity=0.713 Sum_probs=13.5
Q ss_pred EEEeeCcccCcccccc
Q 002276 442 CIFAYGQTGTGKTFTM 457 (943)
Q Consensus 442 cIFAYGQTGSGKTyTM 457 (943)
-+..+|.||||||+|+
T Consensus 25 H~~I~G~TGsGKS~~~ 40 (229)
T PF01935_consen 25 HIAIFGTTGSGKSNTV 40 (229)
T ss_pred eEEEECCCCCCHHHHH
Confidence 3456799999999998
No 259
>PF12846 AAA_10: AAA-like domain
Probab=76.22 E-value=1.1 Score=48.04 Aligned_cols=19 Identities=37% Similarity=0.576 Sum_probs=16.2
Q ss_pred ceEEEeeCcccCccccccc
Q 002276 440 NVCIFAYGQTGTGKTFTME 458 (943)
Q Consensus 440 NvcIFAYGQTGSGKTyTM~ 458 (943)
|..++..|.||||||++|.
T Consensus 1 n~h~~i~G~tGsGKT~~~~ 19 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK 19 (304)
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 5567889999999999983
No 260
>PRK08939 primosomal protein DnaI; Reviewed
Probab=76.19 E-value=0.89 Score=51.09 Aligned_cols=51 Identities=18% Similarity=0.343 Sum_probs=31.6
Q ss_pred eecceeeCCCCCcccccccchhhHHHhhCC-cceEEEeeCcccCcccccccc
Q 002276 409 FKFDAVFGPQADQVDVFQDTAPFANSVLDG-YNVCIFAYGQTGTGKTFTMEG 459 (943)
Q Consensus 409 F~FD~VF~~~asQeeVFeev~pLV~svLdG-yNvcIFAYGQTGSGKTyTM~G 459 (943)
.+||.+-.....+..++..+...+.....| ..-.++-||.+|+||||-+.+
T Consensus 124 atf~~~~~~~~~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~A 175 (306)
T PRK08939 124 ASLADIDLDDRDRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAA 175 (306)
T ss_pred CcHHHhcCCChHHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHH
Confidence 455554333334555555444555554433 234699999999999999854
No 261
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=76.11 E-value=1.8e+02 Score=34.75 Aligned_cols=54 Identities=15% Similarity=0.169 Sum_probs=31.0
Q ss_pred cCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 205 RGVKGDYERLKMSYECQKKELTEAKRTLEELKRENQLKNKEYQETWKSLQELQN 258 (943)
Q Consensus 205 ~~~~~e~~kL~~~~e~qk~eL~~~e~~i~eLe~en~~K~~E~~e~~~~l~~~q~ 258 (943)
.+...+..+|...+.++.+++..++++|.+....+....+.+.+....+..++.
T Consensus 55 ~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~ 108 (420)
T COG4942 55 REQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEV 108 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHH
Confidence 344555666666666666666666666666666665544444444444444333
No 262
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=75.95 E-value=2e+02 Score=37.33 Aligned_cols=12 Identities=33% Similarity=0.440 Sum_probs=6.1
Q ss_pred hhhhHHHHHHHH
Q 002276 858 KKLSSALRRSLQ 869 (943)
Q Consensus 858 ~~~~~~~~~~~~ 869 (943)
.++-.||+.-..
T Consensus 860 ~~l~~~l~~i~~ 871 (908)
T COG0419 860 EKLAEILEELLS 871 (908)
T ss_pred HHHHHHHHHHHh
Confidence 455555555433
No 263
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=75.53 E-value=1.3e+02 Score=38.03 Aligned_cols=46 Identities=24% Similarity=0.282 Sum_probs=19.4
Q ss_pred ccccCccCcchhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q 002276 199 TKDSGERGVKGDYERLKMSYECQKKELTEA--KRTLEELKRENQLKNK 244 (943)
Q Consensus 199 ~~~~~~~~~~~e~~kL~~~~e~qk~eL~~~--e~~i~eLe~en~~K~~ 244 (943)
.++....-.++.+-.|..-.+...++|... -.++.+++.+..++.+
T Consensus 102 nkda~lrq~eekn~slqerLelaE~~l~qs~rae~lpeveael~qr~~ 149 (916)
T KOG0249|consen 102 NKDADLRQNEEKNRSLQERLELAEPKLQQSLRAETLPEVEAELAQRNA 149 (916)
T ss_pred CcchhhchhHHhhhhhhHHHHHhhHhhHhHHhhhhhhhhHHHHHHHHH
Confidence 334444444444444444444444444332 2234444444433333
No 264
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=75.36 E-value=1.2 Score=40.63 Aligned_cols=18 Identities=33% Similarity=0.469 Sum_probs=15.7
Q ss_pred eEEEeeCcccCccccccc
Q 002276 441 VCIFAYGQTGTGKTFTME 458 (943)
Q Consensus 441 vcIFAYGQTGSGKTyTM~ 458 (943)
..++-+|.+|||||+++.
T Consensus 3 ~~~~l~G~~G~GKTtl~~ 20 (148)
T smart00382 3 EVILIVGPPGSGKTTLAR 20 (148)
T ss_pred CEEEEECCCCCcHHHHHH
Confidence 467889999999999984
No 265
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=74.78 E-value=2.4e+02 Score=35.60 Aligned_cols=10 Identities=20% Similarity=0.175 Sum_probs=4.7
Q ss_pred cCcccccccc
Q 002276 450 GTGKTFTMEG 459 (943)
Q Consensus 450 GSGKTyTM~G 459 (943)
.+|+|.-|-|
T Consensus 352 ~~t~~s~~~~ 361 (716)
T KOG4593|consen 352 NSTVTSPARG 361 (716)
T ss_pred cccccCcccc
Confidence 3455555444
No 266
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.74 E-value=2.1e+02 Score=34.88 Aligned_cols=69 Identities=12% Similarity=0.107 Sum_probs=40.1
Q ss_pred cCcchhHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccHHHH
Q 002276 205 RGVKGDYERLKMSYECQKKELTE-----------AKRTLEELKRENQLKNKEYQETWKSLQELQNELMRKSMHVGSLAFA 273 (943)
Q Consensus 205 ~~~~~e~~kL~~~~e~qk~eL~~-----------~e~~i~eLe~en~~K~~E~~e~~~~l~~~q~el~~~~~~v~sL~~~ 273 (943)
.++..++.-|...|+.++..+.. +++....|+..-.++..|++++.+.+..+-+++...++++..++.+
T Consensus 234 q~~~~ehkllee~~~rl~~~~s~VegS~S~~~l~~ek~r~~lee~~~~e~~e~rk~v~k~~~l~q~~~~~~~eL~K~kde 313 (613)
T KOG0992|consen 234 QALIREHKLLEEHLERLHLQLSDVEGSWSGQNLALEKQRSRLEEQVAEETTEKRKAVKKRDDLIQSRKQVSFELEKAKDE 313 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666666666553332 2333333333334577778888777777777777777776644333
No 267
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=74.45 E-value=1.6 Score=42.79 Aligned_cols=27 Identities=26% Similarity=0.427 Sum_probs=21.3
Q ss_pred hHHHhhCCcceEEEeeCcccCcccccccc
Q 002276 431 FANSVLDGYNVCIFAYGQTGTGKTFTMEG 459 (943)
Q Consensus 431 LV~svLdGyNvcIFAYGQTGSGKTyTM~G 459 (943)
++..++.|.| ++..|+||||||+.+..
T Consensus 7 ~~~~i~~~~~--~li~aptGsGKT~~~~~ 33 (169)
T PF00270_consen 7 AIEAIISGKN--VLISAPTGSGKTLAYIL 33 (169)
T ss_dssp HHHHHHTTSE--EEEECSTTSSHHHHHHH
T ss_pred HHHHHHcCCC--EEEECCCCCccHHHHHH
Confidence 4566667777 77889999999999753
No 268
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=74.43 E-value=2.6 Score=46.33 Aligned_cols=129 Identities=19% Similarity=0.306 Sum_probs=73.0
Q ss_pred eecceeeCCCCCcccccccchhhHHHhhCCcceE-EEeeCcccCccccccccCCCCCCccHHhHHHHHHHHHhhccccee
Q 002276 409 FKFDAVFGPQADQVDVFQDTAPFANSVLDGYNVC-IFAYGQTGTGKTFTMEGTKEARGVNFRTLEELFRIIKEREKLYRY 487 (943)
Q Consensus 409 F~FD~VF~~~asQeeVFeev~pLV~svLdGyNvc-IFAYGQTGSGKTyTM~G~~e~~GIIPRal~~LF~~i~~~~~~~~y 487 (943)
..+|...+-+...+.+.+.+ ..++.|..+- ++-||..|||||.++ ..++.......
T Consensus 24 ~~l~~L~Gie~Qk~~l~~Nt----~~Fl~G~pannvLL~G~rGtGKSSlV--------------kall~~y~~~G----- 80 (249)
T PF05673_consen 24 IRLDDLIGIERQKEALIENT----EQFLQGLPANNVLLWGARGTGKSSLV--------------KALLNEYADQG----- 80 (249)
T ss_pred CCHHHhcCHHHHHHHHHHHH----HHHHcCCCCcceEEecCCCCCHHHHH--------------HHHHHHHhhcC-----
Confidence 45566665544444444433 4566665432 566999999999886 33333332221
Q ss_pred EEEEEEEEEecchhhhccccCCCCCCCcccceEEeCC-CCceEcCCceEEEe-cChHHHHHHHHccccccccccCCCccC
Q 002276 488 DISVSVLEVYNEQIRDLLAVGSQPGAVSKRLEVRQAG-EGMHHVPGLVEAHV-NNISEVWEVLQTGSNVRAVGSTNANEH 565 (943)
Q Consensus 488 ~V~VSflEIYNE~I~DLL~~~~~~~~~~k~LeIred~-~g~v~V~gLtev~V-~S~eE~~~lL~~G~k~R~~asT~mN~~ 565 (943)
+-++||..+.+.||-.--. .++..+ .-.+++.+|+--.- .+...+..+|.-|...| .....+...
T Consensus 81 ---LRlIev~k~~L~~l~~l~~---------~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~-P~NvliyAT 147 (249)
T PF05673_consen 81 ---LRLIEVSKEDLGDLPELLD---------LLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEAR-PDNVLIYAT 147 (249)
T ss_pred ---ceEEEECHHHhccHHHHHH---------HHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccC-CCcEEEEEe
Confidence 6789999888766642100 001111 12346666663322 23566667776666554 456667788
Q ss_pred CCCceeeE
Q 002276 566 SSRSHCMH 573 (943)
Q Consensus 566 SSRSHsIf 573 (943)
|.|-|.|-
T Consensus 148 SNRRHLv~ 155 (249)
T PF05673_consen 148 SNRRHLVP 155 (249)
T ss_pred cchhhccc
Confidence 88888774
No 269
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=74.42 E-value=57 Score=32.73 Aligned_cols=49 Identities=10% Similarity=0.205 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 213 RLKMSYECQKKELTEAKRTLEELKRENQLKNKEYQETWKSLQELQNELM 261 (943)
Q Consensus 213 kL~~~~e~qk~eL~~~e~~i~eLe~en~~K~~E~~e~~~~l~~~q~el~ 261 (943)
-|.......-++|++.-..|...+++...|...+...+....+++....
T Consensus 40 ~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~ 88 (126)
T PF07889_consen 40 SMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIK 88 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3566677777777777777777777666666666555544444444433
No 270
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=74.11 E-value=1.5 Score=53.13 Aligned_cols=28 Identities=21% Similarity=0.320 Sum_probs=23.8
Q ss_pred hHHHhhCCcceEEEeeCcccCccccccc
Q 002276 431 FANSVLDGYNVCIFAYGQTGTGKTFTME 458 (943)
Q Consensus 431 LV~svLdGyNvcIFAYGQTGSGKTyTM~ 458 (943)
.+..++..-++.|+..|.||||||.||.
T Consensus 307 ~l~~~~~~~~Glilv~G~tGSGKTTtl~ 334 (564)
T TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSLY 334 (564)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence 4566777778999999999999999984
No 271
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=74.05 E-value=2.8e+02 Score=36.06 Aligned_cols=17 Identities=24% Similarity=0.274 Sum_probs=8.1
Q ss_pred hHHHHHHHHHhHHHhhc
Q 002276 346 EGTKERKELYNKVLELK 362 (943)
Q Consensus 346 ~e~~~RrkLhN~lqELK 362 (943)
+-......|++.+..+.
T Consensus 627 e~~~~~~~l~~~~~~l~ 643 (908)
T COG0419 627 ELEEAEEELESELEKLN 643 (908)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444445555555444
No 272
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=74.01 E-value=85 Score=36.60 Aligned_cols=112 Identities=15% Similarity=0.155 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHhhhhhccHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 252 SLQELQNELMRKSMHVGSLAFAIEGQVKEKSRWFSSLRDLTRRLKIMKMEHINLFEEALAYKKCAAEISEASSTIQSKIN 331 (943)
Q Consensus 252 ~l~~~q~el~~~~~~v~sL~~~ie~~~~ek~kl~~~L~~L~~~l~~~k~e~~~l~~e~~~~~~~~~~i~~~~~~lq~~i~ 331 (943)
.|..+..++.+....+.+.++-|..+.. .+...++.++.++...+..+...+..+......+++|.+....++..|.
T Consensus 242 ~L~kl~~~i~~~lekI~sREk~iN~qle---~l~~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~eme 318 (359)
T PF10498_consen 242 QLDKLQQDISKTLEKIESREKYINNQLE---PLIQEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEME 318 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444332 2334455555566666666666666666666666666665555555554
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhHHHhhcCCEEE
Q 002276 332 HQVQLYEHLKIKFIEGTKERKELYNKVLELKGNIRV 367 (943)
Q Consensus 332 ~~~~~~e~l~~kl~~e~~~RrkLhN~lqELKGNIRV 367 (943)
+......+- .-+.+-...-.+|.++|.+|-=.|-|
T Consensus 319 erg~~mtD~-sPlv~IKqAl~kLk~EI~qMdvrIGV 353 (359)
T PF10498_consen 319 ERGSSMTDG-SPLVKIKQALTKLKQEIKQMDVRIGV 353 (359)
T ss_pred HhcCCCCCC-CHHHHHHHHHHHHHHHHHHhhhhhhe
Confidence 432221111 11223334556677777776544444
No 273
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=73.90 E-value=1.8 Score=51.80 Aligned_cols=29 Identities=28% Similarity=0.306 Sum_probs=24.0
Q ss_pred hhHHHhhCCcceEEEeeCcccCccccccc
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTFTME 458 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTyTM~ 458 (943)
..+..++..-++.|+..|+||||||.||.
T Consensus 232 ~~l~~~~~~~~GlilitGptGSGKTTtL~ 260 (486)
T TIGR02533 232 SRFERLIRRPHGIILVTGPTGSGKTTTLY 260 (486)
T ss_pred HHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 35566777778889999999999999984
No 274
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=73.45 E-value=1.5e+02 Score=32.61 Aligned_cols=18 Identities=22% Similarity=0.248 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 002276 283 RWFSSLRDLTRRLKIMKM 300 (943)
Q Consensus 283 kl~~~L~~L~~~l~~~k~ 300 (943)
.+...+.+.+.-++.|+.
T Consensus 124 ~l~~~l~ea~~mL~emr~ 141 (264)
T PF06008_consen 124 DLQRALAEAQRMLEEMRK 141 (264)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 456666666666666653
No 275
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=73.03 E-value=93 Score=30.05 Aligned_cols=32 Identities=28% Similarity=0.281 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 283 RWFSSLRDLTRRLKIMKMEHINLFEEALAYKK 314 (943)
Q Consensus 283 kl~~~L~~L~~~l~~~k~e~~~l~~e~~~~~~ 314 (943)
.....|..|...+..++.+...+...+..+..
T Consensus 78 ~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~~ 109 (126)
T PF13863_consen 78 EKEAEIKKLKAELEELKSEISKLEEKLEEYKK 109 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666665555554443
No 276
>PRK10436 hypothetical protein; Provisional
Probab=73.00 E-value=1.8 Score=51.50 Aligned_cols=28 Identities=32% Similarity=0.342 Sum_probs=23.6
Q ss_pred hHHHhhCCcceEEEeeCcccCccccccc
Q 002276 431 FANSVLDGYNVCIFAYGQTGTGKTFTME 458 (943)
Q Consensus 431 LV~svLdGyNvcIFAYGQTGSGKTyTM~ 458 (943)
.+..++..-++.|+..|+||||||.||.
T Consensus 209 ~l~~~~~~~~GliLvtGpTGSGKTTtL~ 236 (462)
T PRK10436 209 QFRQALQQPQGLILVTGPTGSGKTVTLY 236 (462)
T ss_pred HHHHHHHhcCCeEEEECCCCCChHHHHH
Confidence 4556667778899999999999999984
No 277
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=72.98 E-value=1.5 Score=45.84 Aligned_cols=19 Identities=32% Similarity=0.531 Sum_probs=16.3
Q ss_pred ceEEEeeCcccCccccccc
Q 002276 440 NVCIFAYGQTGTGKTFTME 458 (943)
Q Consensus 440 NvcIFAYGQTGSGKTyTM~ 458 (943)
++.|+-.|+||||||.||.
T Consensus 1 ~GlilI~GptGSGKTTll~ 19 (198)
T cd01131 1 RGLVLVTGPTGSGKSTTLA 19 (198)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3678889999999999983
No 278
>PF12001 DUF3496: Domain of unknown function (DUF3496); InterPro: IPR021885 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 110 amino acids in length.
Probab=72.92 E-value=31 Score=33.88 Aligned_cols=82 Identities=18% Similarity=0.235 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHhhc
Q 002276 284 WFSSLRDLTRRLKIMKMEHINL-FEEALAYKKCAAEISEASSTIQSKINHQVQLYEHLKIKFIEGTKERKELYNKVLELK 362 (943)
Q Consensus 284 l~~~L~~L~~~l~~~k~e~~~l-~~e~~~~~~~~~~i~~~~~~lq~~i~~~~~~~e~l~~kl~~e~~~RrkLhN~lqELK 362 (943)
+.-.|++|+.++.-+|..+... ..+++.|++...+--+....+-.++...-+.++++..++.-|....|-++..
T Consensus 5 mElrIkdLeselsk~Ktsq~d~~~~eLEkYkqly~eElk~r~SLs~kL~ktnerLaevstkLl~Ekeq~rs~lst----- 79 (111)
T PF12001_consen 5 MELRIKDLESELSKMKTSQEDSNKTELEKYKQLYLEELKLRKSLSNKLNKTNERLAEVSTKLLVEKEQNRSLLST----- 79 (111)
T ss_pred HHHHHHHHHHHHHHhHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccccccc-----
Confidence 3446777888887777554444 6777777775544444455555566666667777777777666666666544
Q ss_pred CCEEEEEEeCCCCc
Q 002276 363 GNIRVFCRCRPLNS 376 (943)
Q Consensus 363 GNIRV~~RVRPl~~ 376 (943)
+-+||...
T Consensus 80 ------lttrPvlE 87 (111)
T PF12001_consen 80 ------LTTRPVLE 87 (111)
T ss_pred ------cCCCCCCC
Confidence 45788653
No 279
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=72.29 E-value=2 Score=48.84 Aligned_cols=29 Identities=28% Similarity=0.430 Sum_probs=21.9
Q ss_pred hhHHHhhCCcceEEEeeCcccCccccccc
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTFTME 458 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTyTM~ 458 (943)
+.+..++.--.+.|+-.|+||||||.||.
T Consensus 112 ~~l~~~~~~~~g~ili~G~tGSGKTT~l~ 140 (343)
T TIGR01420 112 PVLRELAERPRGLILVTGPTGSGKSTTLA 140 (343)
T ss_pred HHHHHHHhhcCcEEEEECCCCCCHHHHHH
Confidence 44555554445779999999999999983
No 280
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=72.23 E-value=1.3e+02 Score=31.36 Aligned_cols=27 Identities=33% Similarity=0.464 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 213 RLKMSYECQKKELTEAKRTLEELKREN 239 (943)
Q Consensus 213 kL~~~~e~qk~eL~~~e~~i~eLe~en 239 (943)
.-..+++.+++||.+++..+.+...+.
T Consensus 24 ~~R~E~~~l~~EL~evk~~v~~~I~ev 50 (159)
T PF05384_consen 24 QARQEYERLRKELEEVKEEVSEVIEEV 50 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555544444444
No 281
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=72.19 E-value=99 Score=33.93 Aligned_cols=26 Identities=15% Similarity=0.070 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 284 WFSSLRDLTRRLKIMKMEHINLFEEA 309 (943)
Q Consensus 284 l~~~L~~L~~~l~~~k~e~~~l~~e~ 309 (943)
...+|..|+..++..+.+.....+.+
T Consensus 58 I~~DIn~lE~iIkqa~~er~~~~~~i 83 (230)
T PF10146_consen 58 INQDINTLENIIKQAESERNKRQEKI 83 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555544444443
No 282
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=71.59 E-value=1.6e+02 Score=32.29 Aligned_cols=33 Identities=18% Similarity=0.291 Sum_probs=19.1
Q ss_pred cCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 205 RGVKGDYERLKMSYECQKKELTEAKRTLEELKR 237 (943)
Q Consensus 205 ~~~~~e~~kL~~~~e~qk~eL~~~e~~i~eLe~ 237 (943)
..++.+...|...++.+.++...+..+...+..
T Consensus 48 ~~~e~~l~~L~~d~~~L~~k~~~~~~~~~~l~~ 80 (264)
T PF06008_consen 48 DPLEKELESLEQDVENLQEKATKVSRKAQQLNN 80 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666666666665555444443
No 283
>PRK08181 transposase; Validated
Probab=71.31 E-value=1.5 Score=48.54 Aligned_cols=42 Identities=21% Similarity=0.401 Sum_probs=27.0
Q ss_pred CCcceEEEeeCcccCccccccccCC-----CCCCccHHhHHHHHHHHHh
Q 002276 437 DGYNVCIFAYGQTGTGKTFTMEGTK-----EARGVNFRTLEELFRIIKE 480 (943)
Q Consensus 437 dGyNvcIFAYGQTGSGKTyTM~G~~-----e~~GIIPRal~~LF~~i~~ 480 (943)
.|.| |+-||++|+||||-+.+-. ...-++...+.+|+..+..
T Consensus 105 ~~~n--lll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~ 151 (269)
T PRK08181 105 KGAN--LLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQV 151 (269)
T ss_pred cCce--EEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHH
Confidence 4555 8899999999999986531 1122444455566665543
No 284
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=71.26 E-value=22 Score=38.57 Aligned_cols=21 Identities=24% Similarity=0.264 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002276 288 LRDLTRRLKIMKMEHINLFEE 308 (943)
Q Consensus 288 L~~L~~~l~~~k~e~~~l~~e 308 (943)
...|+++.+.+..|+..|.++
T Consensus 181 ~~al~Kq~e~~~~EydrLlee 201 (216)
T KOG1962|consen 181 VDALKKQSEGLQDEYDRLLEE 201 (216)
T ss_pred HHHHHHHHHHcccHHHHHHHH
Confidence 333333343334444444333
No 285
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=71.06 E-value=2.9e+02 Score=35.01 Aligned_cols=78 Identities=19% Similarity=0.091 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHhhcC
Q 002276 286 SSLRDLTRRLKIMKMEHINLFEEALAYKKCAAEISEASSTIQSKINHQVQLYEHLKIKFIEGTKERKELYNKVLELKG 363 (943)
Q Consensus 286 ~~L~~L~~~l~~~k~e~~~l~~e~~~~~~~~~~i~~~~~~lq~~i~~~~~~~e~l~~kl~~e~~~RrkLhN~lqELKG 363 (943)
..+..++..+...+.....+...+..++..+.........++..+......++....+...-+.+-.+|+-.+..++-
T Consensus 545 ~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~ 622 (698)
T KOG0978|consen 545 KELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKK 622 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344444445554454445555555555555555444445555555555555555555544444455555555555544
No 286
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=71.03 E-value=2.6e+02 Score=34.39 Aligned_cols=31 Identities=16% Similarity=0.366 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 315 CAAEISEASSTIQSKINHQVQLYEHLKIKFI 345 (943)
Q Consensus 315 ~~~~i~~~~~~lq~~i~~~~~~~e~l~~kl~ 345 (943)
.+.++......+...+...-..+.++...|-
T Consensus 195 il~~l~~~~~~l~~~~e~IP~l~~~l~~~~P 225 (560)
T PF06160_consen 195 ILEKLKEETDELEEIMEDIPKLYKELQKEFP 225 (560)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhH
Confidence 3334444444444444444444444444333
No 287
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=70.78 E-value=2 Score=50.85 Aligned_cols=51 Identities=22% Similarity=0.372 Sum_probs=32.6
Q ss_pred ceeeecceeeCCCCCcccccccchhhHHHh--hCC--cceEEEeeCcccCccccccc
Q 002276 406 KKTFKFDAVFGPQADQVDVFQDTAPFANSV--LDG--YNVCIFAYGQTGTGKTFTME 458 (943)
Q Consensus 406 ~ktF~FD~VF~~~asQeeVFeev~pLV~sv--LdG--yNvcIFAYGQTGSGKTyTM~ 458 (943)
...|+||.-+.. .++...|..+..+.... ..| ||. +|-||.+|+||||.+.
T Consensus 105 ~~~~tFdnFv~g-~~N~~a~~~a~~~a~~~~~~~~~~~np-l~L~G~~G~GKTHLl~ 159 (445)
T PRK12422 105 DPLMTFANFLVT-PENDLPHRILQEFTKVSEQGKGFPFNP-IYLFGPEGSGKTHLMQ 159 (445)
T ss_pred CccccccceeeC-CcHHHHHHHHHHHHhccccccCCCCce-EEEEcCCCCCHHHHHH
Confidence 457999987753 34444454443444322 223 554 6789999999999984
No 288
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=70.70 E-value=1.1e+02 Score=29.97 Aligned_cols=65 Identities=20% Similarity=0.289 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 659 ELLRYKQMVEKTKQELKSRDVQSKRMEDTIHGLDLKLKDKDLKIKSLQDKVKELETQLLVERKLAR 724 (943)
Q Consensus 659 el~rlk~~ie~LK~eL~~~~~q~~~lE~~i~~l~~kl~e~d~~i~~LqekikeLE~qL~~erkl~r 724 (943)
.+..+...++..|.....+..+...++..++.|..........+..|+.+|.++...+.. +++++
T Consensus 17 ~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~-eK~ak 81 (107)
T PF09304_consen 17 RLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED-EKQAK 81 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 345577778888777777777777788888888888888888888899998888887765 34444
No 289
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=70.49 E-value=1.6e+02 Score=39.47 Aligned_cols=23 Identities=17% Similarity=0.229 Sum_probs=14.7
Q ss_pred HHHHHhHHHHHHHHHhHHHhhcC
Q 002276 341 KIKFIEGTKERKELYNKVLELKG 363 (943)
Q Consensus 341 ~~kl~~e~~~RrkLhN~lqELKG 363 (943)
.+++.+....++.|.+++.++.-
T Consensus 1000 ~er~l~dnl~~~~l~~q~~e~~r 1022 (1294)
T KOG0962|consen 1000 RERNLKDNLTLRNLERKLKELER 1022 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566667777777777754
No 290
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=70.44 E-value=2.8e+02 Score=34.56 Aligned_cols=28 Identities=14% Similarity=0.077 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 288 LRDLTRRLKIMKMEHINLFEEALAYKKC 315 (943)
Q Consensus 288 L~~L~~~l~~~k~e~~~l~~e~~~~~~~ 315 (943)
+..+...+..+..+...|..+++..+..
T Consensus 280 i~~~~~~L~~kd~~i~~L~~di~~~~~S 307 (629)
T KOG0963|consen 280 IDALGSVLNQKDSEIAQLSNDIERLEAS 307 (629)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3344444444555555555555544443
No 291
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=70.22 E-value=1.1e+02 Score=34.68 Aligned_cols=14 Identities=43% Similarity=0.477 Sum_probs=10.4
Q ss_pred CCCCCCCCCCCCCh
Q 002276 93 GSPEIPKSSYGESP 106 (943)
Q Consensus 93 ~~~~~~~~~~~~~~ 106 (943)
+||-..+.+||.|-
T Consensus 4 ~sP~~~~~~yg~ss 17 (305)
T PF15290_consen 4 LSPVNIRDSYGPSS 17 (305)
T ss_pred CCCCCCcccccCcC
Confidence 57777777888774
No 292
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=70.22 E-value=5.1 Score=46.38 Aligned_cols=51 Identities=20% Similarity=0.160 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHhhcCCEE-EEEEeCCCCch
Q 002276 327 QSKINHQVQLYEHLKIKFIEGTKERKELYNKVLELKGNIR-VFCRCRPLNSE 377 (943)
Q Consensus 327 q~~i~~~~~~~e~l~~kl~~e~~~RrkLhN~lqELKGNIR-V~~RVRPl~~~ 377 (943)
..+|..+++.++++.......+..-+.|.+.|.|+-.++| --+||.-+...
T Consensus 150 Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrsRRnNiRIiGiPEg 201 (370)
T PF02994_consen 150 EERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRSRRNNIRIIGIPEG 201 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEEES----
T ss_pred HhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhccCCceeEEecCCC
Confidence 3334444444444444444444445566777777766543 24566665543
No 293
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=69.88 E-value=2e+02 Score=32.57 Aligned_cols=49 Identities=31% Similarity=0.285 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccHHHHH
Q 002276 226 TEAKRTLEELKRENQLKNKEYQETWKSLQELQNELMRKSMHVGSLAFAI 274 (943)
Q Consensus 226 ~~~e~~i~eLe~en~~K~~E~~e~~~~l~~~q~el~~~~~~v~sL~~~i 274 (943)
++.+..+..|++||+.-...|+..-..-..+..+|.-+-.++..|+-.+
T Consensus 56 e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl 104 (307)
T PF10481_consen 56 EEEKNEYSALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQL 104 (307)
T ss_pred HHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHH
Confidence 3333444555555555555555555555555555554444444443333
No 294
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.87 E-value=2.4e+02 Score=34.81 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=15.7
Q ss_pred HHHhHHHHHHHHHhHHHhhcCCE
Q 002276 343 KFIEGTKERKELYNKVLELKGNI 365 (943)
Q Consensus 343 kl~~e~~~RrkLhN~lqELKGNI 365 (943)
.|..-+..|+.+...|.+|.|-|
T Consensus 703 ~Y~l~~~Q~~~iqsiL~~L~~~i 725 (741)
T KOG4460|consen 703 TYILSAYQRKCIQSILKELGEHI 725 (741)
T ss_pred cccccHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777776644
No 295
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=69.73 E-value=2.4e+02 Score=33.53 Aligned_cols=6 Identities=17% Similarity=0.412 Sum_probs=3.0
Q ss_pred CCEEEE
Q 002276 363 GNIRVF 368 (943)
Q Consensus 363 GNIRV~ 368 (943)
+||+|+
T Consensus 394 ~~i~vi 399 (498)
T TIGR03007 394 VSFRII 399 (498)
T ss_pred ceEEEe
Confidence 355554
No 296
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=69.59 E-value=2.9 Score=46.74 Aligned_cols=35 Identities=23% Similarity=0.335 Sum_probs=27.4
Q ss_pred ccccch--hhHHHhhCCcceEEEeeCcccCccccccc
Q 002276 424 VFQDTA--PFANSVLDGYNVCIFAYGQTGTGKTFTME 458 (943)
Q Consensus 424 VFeev~--pLV~svLdGyNvcIFAYGQTGSGKTyTM~ 458 (943)
-|++.. +++..+.--.-+.|+..|.|||||+.||-
T Consensus 109 t~eeL~LPevlk~la~~kRGLviiVGaTGSGKSTtmA 145 (375)
T COG5008 109 TFEELKLPEVLKDLALAKRGLVIIVGATGSGKSTTMA 145 (375)
T ss_pred cHHhcCCcHHHHHhhcccCceEEEECCCCCCchhhHH
Confidence 355554 46777776777889999999999999983
No 297
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=69.59 E-value=1.9e+02 Score=32.34 Aligned_cols=61 Identities=18% Similarity=0.193 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccHHHHHHh
Q 002276 213 RLKMSYECQKKELTEAKRTLEELKRENQLKNKEYQETWKSLQELQNELMRKSMHVGSLAFAIEG 276 (943)
Q Consensus 213 kL~~~~e~qk~eL~~~e~~i~eLe~en~~K~~E~~e~~~~l~~~q~el~~~~~~v~sL~~~ie~ 276 (943)
.|..--+...+++..++.++..|++.++....|+.-. .+....+.--++++|.+|...|..
T Consensus 71 eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L---~TYkD~EYPvK~vqIa~L~rqlq~ 131 (258)
T PF15397_consen 71 ELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFL---STYKDHEYPVKAVQIANLVRQLQQ 131 (258)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhhhhhhHHHHHHHHHHHHHHH
Confidence 3333333444444455555555555555444444221 233445666666666666666544
No 298
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=69.54 E-value=2.5 Score=48.98 Aligned_cols=26 Identities=31% Similarity=0.331 Sum_probs=19.5
Q ss_pred hHHHhhCCcceEEEeeCcccCcccccc
Q 002276 431 FANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 431 LV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
++..++. .++.|+..|+||||||+||
T Consensus 141 ~~~~l~~-~~GlilI~G~TGSGKTT~l 166 (372)
T TIGR02525 141 LFNSLLP-AAGLGLICGETGSGKSTLA 166 (372)
T ss_pred HHHHHHh-cCCEEEEECCCCCCHHHHH
Confidence 3444443 4567888999999999998
No 299
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=69.53 E-value=2.4e+02 Score=33.36 Aligned_cols=12 Identities=33% Similarity=0.811 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHH
Q 002276 229 KRTLEELKRENQ 240 (943)
Q Consensus 229 e~~i~eLe~en~ 240 (943)
+++|++|++.-+
T Consensus 351 QkkiEdLQRqHq 362 (593)
T KOG4807|consen 351 QKKIEDLQRQHQ 362 (593)
T ss_pred HHHHHHHHHHHH
Confidence 445555555443
No 300
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.44 E-value=1.2e+02 Score=36.80 Aligned_cols=32 Identities=6% Similarity=0.141 Sum_probs=19.4
Q ss_pred cCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 205 RGVKGDYERLKMSYECQKKELTEAKRTLEELK 236 (943)
Q Consensus 205 ~~~~~e~~kL~~~~e~qk~eL~~~e~~i~eLe 236 (943)
+++..+++...+...+.+.-++...+++.+|+
T Consensus 337 ~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLq 368 (508)
T KOG3091|consen 337 EDLRQRLKVQDQEVKQHRIRINAIGERVTELQ 368 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555566666666666666666666665
No 301
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=68.88 E-value=65 Score=29.29 Aligned_cols=33 Identities=21% Similarity=0.156 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 209 GDYERLKMSYECQKKELTEAKRTLEELKRENQL 241 (943)
Q Consensus 209 ~e~~kL~~~~e~qk~eL~~~e~~i~eLe~en~~ 241 (943)
+.+++|..+|...-...+.++.++++|+.+|..
T Consensus 4 E~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~ 36 (72)
T PF06005_consen 4 ELLEQLEEKIQQAVETIALLQMENEELKEKNNE 36 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456788888888888888888888888777644
No 302
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=68.84 E-value=1.8 Score=47.76 Aligned_cols=42 Identities=19% Similarity=0.286 Sum_probs=25.8
Q ss_pred ecceeeCCCCCcccccccchhhHHHhhCCcceEEEeeCcccCccccccc
Q 002276 410 KFDAVFGPQADQVDVFQDTAPFANSVLDGYNVCIFAYGQTGTGKTFTME 458 (943)
Q Consensus 410 ~FD~VF~~~asQeeVFeev~pLV~svLdGyNvcIFAYGQTGSGKTyTM~ 458 (943)
+||.+.+ |.++.+.+..++ -.|....++-||++|+|||+++.
T Consensus 13 ~~~~~~g----~~~~~~~L~~~~---~~~~~~~lll~Gp~GtGKT~la~ 54 (337)
T PRK12402 13 LLEDILG----QDEVVERLSRAV---DSPNLPHLLVQGPPGSGKTAAVR 54 (337)
T ss_pred cHHHhcC----CHHHHHHHHHHH---hCCCCceEEEECCCCCCHHHHHH
Confidence 4666664 444443333222 23443357889999999999873
No 303
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=68.63 E-value=3.5e+02 Score=34.87 Aligned_cols=44 Identities=27% Similarity=0.188 Sum_probs=33.3
Q ss_pred HHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 273 AIEGQVKEKSRWFSSLRDLTRRLKIMKMEHINLFEEALAYKKCA 316 (943)
Q Consensus 273 ~ie~~~~ek~kl~~~L~~L~~~l~~~k~e~~~l~~e~~~~~~~~ 316 (943)
-|.+..+.+......+..|..++..+..+...|.-++..+.+.+
T Consensus 121 ~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~kel 164 (769)
T PF05911_consen 121 LIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKEL 164 (769)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666778888899999999999888888888776655
No 304
>PF13245 AAA_19: Part of AAA domain
Probab=68.49 E-value=2.7 Score=37.88 Aligned_cols=26 Identities=35% Similarity=0.497 Sum_probs=17.4
Q ss_pred HHHhhCCcceEEEeeCcccCccccccc
Q 002276 432 ANSVLDGYNVCIFAYGQTGTGKTFTME 458 (943)
Q Consensus 432 V~svLdGyNvcIFAYGQTGSGKTyTM~ 458 (943)
|..++.| +..+..-|..|||||+|+.
T Consensus 3 v~~al~~-~~~~vv~g~pGtGKT~~~~ 28 (76)
T PF13245_consen 3 VRRALAG-SPLFVVQGPPGTGKTTTLA 28 (76)
T ss_pred HHHHHhh-CCeEEEECCCCCCHHHHHH
Confidence 3444552 3334458999999999974
No 305
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=68.49 E-value=2.5e+02 Score=33.85 Aligned_cols=14 Identities=29% Similarity=0.245 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHH
Q 002276 213 RLKMSYECQKKELT 226 (943)
Q Consensus 213 kL~~~~e~qk~eL~ 226 (943)
.|-+..+++++-.+
T Consensus 325 ll~sqleSqr~y~e 338 (493)
T KOG0804|consen 325 LLTSQLESQRKYYE 338 (493)
T ss_pred hhhhhhhHHHHHHH
Confidence 66677777766444
No 306
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=68.47 E-value=2.9e+02 Score=33.96 Aligned_cols=27 Identities=11% Similarity=0.090 Sum_probs=20.5
Q ss_pred cCccCcchhHHHHHHHHHHHHHHHHHH
Q 002276 202 SGERGVKGDYERLKMSYECQKKELTEA 228 (943)
Q Consensus 202 ~~~~~~~~e~~kL~~~~e~qk~eL~~~ 228 (943)
.++.++.++++.+...++.....|.++
T Consensus 245 l~~~~i~~~i~~i~~~l~~~~~~L~~l 271 (560)
T PF06160_consen 245 LEHLDIEEEIEQIEEQLEEALALLKNL 271 (560)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 447788888888888888887766654
No 307
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=68.14 E-value=2.8 Score=48.21 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=18.4
Q ss_pred hCCcceEEEeeCcccCcccccc
Q 002276 436 LDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 436 LdGyNvcIFAYGQTGSGKTyTM 457 (943)
+.--++.|+..|+||||||.||
T Consensus 130 ~~~~~glilI~GpTGSGKTTtL 151 (358)
T TIGR02524 130 IAPQEGIVFITGATGSGKSTLL 151 (358)
T ss_pred HhccCCEEEEECCCCCCHHHHH
Confidence 3334688999999999999998
No 308
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=67.79 E-value=3.5 Score=46.98 Aligned_cols=29 Identities=34% Similarity=0.421 Sum_probs=20.6
Q ss_pred chhhHHHhhCCcceEEEeeCcccCcccccc
Q 002276 428 TAPFANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 428 v~pLV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
...++..++.+. ..|+-.|.||||||.+|
T Consensus 133 ~~~~L~~~v~~~-~nilI~G~tGSGKTTll 161 (323)
T PRK13833 133 QASVIRSAIDSR-LNIVISGGTGSGKTTLA 161 (323)
T ss_pred HHHHHHHHHHcC-CeEEEECCCCCCHHHHH
Confidence 345555555432 34788899999999998
No 309
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=67.70 E-value=19 Score=41.14 Aligned_cols=85 Identities=27% Similarity=0.392 Sum_probs=45.5
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccHHHHHHhhHhhhhhHHH
Q 002276 207 VKGDYERLKMSYECQKKELTEAKRTLEELKRENQLKNKEYQETWKSLQELQNELMRKSMHVGSLAFAIEGQVKEKSRWFS 286 (943)
Q Consensus 207 ~~~e~~kL~~~~e~qk~eL~~~e~~i~eLe~en~~K~~E~~e~~~~l~~~q~el~~~~~~v~sL~~~ie~~~~ek~kl~~ 286 (943)
++.+.......++..+.+|..++.++..|+.+.+....+.+.....+...+..|.+ ...=+.+...++.+|..
T Consensus 226 a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~r-------A~~Li~~L~~E~~RW~~ 298 (344)
T PF12777_consen 226 AEAELEEAEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLER-------AEKLISGLSGEKERWSE 298 (344)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHCCHHHHHCCHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-------HHHHHhhhcchhhhHHH
Confidence 34455555555555555555555566655555544333333322222222222322 23335555667788999
Q ss_pred HHHHHHHHHHHH
Q 002276 287 SLRDLTRRLKIM 298 (943)
Q Consensus 287 ~L~~L~~~l~~~ 298 (943)
.+..+...+..+
T Consensus 299 ~~~~l~~~~~~l 310 (344)
T PF12777_consen 299 QIEELEEQLKNL 310 (344)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHhccc
Confidence 888888777554
No 310
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=67.65 E-value=1.1e+02 Score=33.53 Aligned_cols=13 Identities=31% Similarity=0.215 Sum_probs=6.1
Q ss_pred eeCcccCcccccc
Q 002276 445 AYGQTGTGKTFTM 457 (943)
Q Consensus 445 AYGQTGSGKTyTM 457 (943)
.|-+|.-|+.+=+
T Consensus 194 l~~~t~Dg~~~g~ 206 (251)
T PF11932_consen 194 LYYQTLDGSQAGV 206 (251)
T ss_pred heeECCCccceee
Confidence 3445555554443
No 311
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=67.64 E-value=1.7 Score=55.27 Aligned_cols=159 Identities=16% Similarity=0.193 Sum_probs=0.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhhh------------------
Q 002276 207 VKGDYERLKMSYECQKKELTEAKRTLEELKRENQLKNKEYQETWKSLQELQN---ELMRKSM------------------ 265 (943)
Q Consensus 207 ~~~e~~kL~~~~e~qk~eL~~~e~~i~eLe~en~~K~~E~~e~~~~l~~~q~---el~~~~~------------------ 265 (943)
+++--.+|...+..+..++..+...+..|++-.+.-..|+++....+...+. .|.++..
T Consensus 319 lEeaKKkL~~~L~el~e~le~~~~~~~~LeK~k~rL~~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~ 398 (859)
T PF01576_consen 319 LEEAKKKLERKLQELQEQLEEANAKVSSLEKTKKRLQGELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQA 398 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3444456777777777777777777777666665555555555433333221 2222210
Q ss_pred hhccHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 266 HVGSLAFAIEGQVKEKSRWFSSLRDLTRRLKIMKMEHINLFEEALAY-------KKCAAEISEASSTIQSKINHQVQLYE 338 (943)
Q Consensus 266 ~v~sL~~~ie~~~~ek~kl~~~L~~L~~~l~~~k~e~~~l~~e~~~~-------~~~~~~i~~~~~~lq~~i~~~~~~~e 338 (943)
..+.+..+......+...+...+..+...+..++.+...|..++..+ ...+.++......+...+..+...++
T Consensus 399 e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~le 478 (859)
T PF01576_consen 399 ERDAAQREARELETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLE 478 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 01111111111111111233333333333333333333333333322 22233344444445555555555555
Q ss_pred HHHHHHHhHHHHHHHHHhHHHhhcCCE
Q 002276 339 HLKIKFIEGTKERKELYNKVLELKGNI 365 (943)
Q Consensus 339 ~l~~kl~~e~~~RrkLhN~lqELKGNI 365 (943)
++...+...+..+.+|.-.|..+|-.+
T Consensus 479 E~E~~l~~~E~~~lRl~~el~~~r~e~ 505 (859)
T PF01576_consen 479 EAEDALEAEEQKKLRLQVELQQLRQEI 505 (859)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666666666544
No 312
>PRK11519 tyrosine kinase; Provisional
Probab=67.54 E-value=1e+02 Score=38.86 Aligned_cols=39 Identities=15% Similarity=0.180 Sum_probs=23.7
Q ss_pred ccCccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 201 DSGERGVKGDYERLKMSYECQKKELTEAKRTLEELKREN 239 (943)
Q Consensus 201 ~~~~~~~~~e~~kL~~~~e~qk~eL~~~e~~i~eLe~en 239 (943)
.|-+..++...+...+..+.+.+++.+++.++++.+...
T Consensus 252 ~Yi~~~~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l 290 (719)
T PRK11519 252 NYLEQNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKL 290 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666666666666666666665544
No 313
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=67.29 E-value=3.1 Score=45.70 Aligned_cols=29 Identities=31% Similarity=0.387 Sum_probs=22.2
Q ss_pred hhHHHhhCCcceEEEeeCcccCccccccc
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTFTME 458 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTyTM~ 458 (943)
..+..++..-.+.|+-.|.||||||.||.
T Consensus 70 ~~l~~~~~~~~GlilisG~tGSGKTT~l~ 98 (264)
T cd01129 70 EIFRKLLEKPHGIILVTGPTGSGKTTTLY 98 (264)
T ss_pred HHHHHHHhcCCCEEEEECCCCCcHHHHHH
Confidence 44556666556678888999999999983
No 314
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=67.27 E-value=44 Score=36.47 Aligned_cols=16 Identities=44% Similarity=0.677 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 002276 224 ELTEAKRTLEELKREN 239 (943)
Q Consensus 224 eL~~~e~~i~eLe~en 239 (943)
.+.+++.+++++..++
T Consensus 136 ~~ee~kekl~E~~~Ek 151 (290)
T COG4026 136 DYEELKEKLEELQKEK 151 (290)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333344444444333
No 315
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=67.22 E-value=5 Score=49.82 Aligned_cols=90 Identities=26% Similarity=0.319 Sum_probs=55.4
Q ss_pred eecceeeCCCCCcccccccchhhHHHhhCCcceEEEeeCcccCccccccccCC---CCCCcc----HHhHHHHHHHHHhh
Q 002276 409 FKFDAVFGPQADQVDVFQDTAPFANSVLDGYNVCIFAYGQTGTGKTFTMEGTK---EARGVN----FRTLEELFRIIKER 481 (943)
Q Consensus 409 F~FD~VF~~~asQeeVFeev~pLV~svLdGyNvcIFAYGQTGSGKTyTM~G~~---e~~GII----PRal~~LF~~i~~~ 481 (943)
|....=|.|.-.|..-|+. ++..+-+|-..- ..+|.|||||||||..-- ..+-|| -....+|+..+..-
T Consensus 2 f~~~~~~~~~~~Q~~ai~~---l~~~~~~~~~~~-~l~Gvtgs~kt~~~a~~~~~~~~p~Lvi~~n~~~A~ql~~el~~f 77 (655)
T TIGR00631 2 FKLHSPFQPAGDQPKAIAK---LVEGLTDGEKHQ-TLLGVTGSGKTFTMANVIAQVNRPTLVIAHNKTLAAQLYNEFKEF 77 (655)
T ss_pred ceeccCCCCChHHHHHHHH---HHHhhhcCCCcE-EEECCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHHh
Confidence 4444456777777765554 445555563222 378999999999997631 223333 23445677766654
Q ss_pred cccceeEEEEEEEEEecchhh
Q 002276 482 EKLYRYDISVSVLEVYNEQIR 502 (943)
Q Consensus 482 ~~~~~y~V~VSflEIYNE~I~ 502 (943)
-........|||+.-|.-..|
T Consensus 78 ~p~~~V~~f~sy~d~y~pe~y 98 (655)
T TIGR00631 78 FPENAVEYFVSYYDYYQPEAY 98 (655)
T ss_pred CCCCeEEEEeeecccCCcccc
Confidence 333457788999998865543
No 316
>PLN02939 transferase, transferring glycosyl groups
Probab=66.81 E-value=2.4e+02 Score=37.16 Aligned_cols=15 Identities=20% Similarity=0.328 Sum_probs=9.8
Q ss_pred CCCcceeEEEecCCC
Q 002276 612 GGDSKTLMFVQISPN 626 (943)
Q Consensus 612 GGNSKTlMIv~ISPs 626 (943)
||=-..-.|.||||.
T Consensus 689 ~GIv~AD~VtTVSpt 703 (977)
T PLN02939 689 GAIVYSNIVTTVSPT 703 (977)
T ss_pred HHHHhCCeeEeeeHH
Confidence 343345678889986
No 317
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=66.75 E-value=1.4 Score=43.79 Aligned_cols=28 Identities=21% Similarity=0.394 Sum_probs=15.5
Q ss_pred hhHHHhhCCcceEEEeeCcccCcccccc
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
.++.....|...+|+-+|..|+|||+.+
T Consensus 14 ~~l~~~~~~~~~~~ll~G~~G~GKT~ll 41 (185)
T PF13191_consen 14 DLLDAAQSGSPRNLLLTGESGSGKTSLL 41 (185)
T ss_dssp HTTGGTSS-----EEE-B-TTSSHHHHH
T ss_pred HHHHHHHcCCCcEEEEECCCCCCHHHHH
Confidence 3344334667788999999999999985
No 318
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=66.74 E-value=2.4 Score=45.89 Aligned_cols=27 Identities=37% Similarity=0.533 Sum_probs=18.8
Q ss_pred hhHHHhhCCcceEEEeeCcccCcccccc
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
.++..++.+ .+.|+.-|.||||||.+|
T Consensus 118 ~~l~~~v~~-~~~ili~G~tGSGKTT~l 144 (270)
T PF00437_consen 118 EFLRSAVRG-RGNILISGPTGSGKTTLL 144 (270)
T ss_dssp HHHHHCHHT-TEEEEEEESTTSSHHHHH
T ss_pred HHHhhcccc-ceEEEEECCCccccchHH
Confidence 344443333 456677799999999998
No 319
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=66.71 E-value=2.3e+02 Score=32.01 Aligned_cols=27 Identities=19% Similarity=0.217 Sum_probs=19.5
Q ss_pred HHHHHHHHHhHHHHHHHHHhHHHhhcC
Q 002276 337 YEHLKIKFIEGTKERKELYNKVLELKG 363 (943)
Q Consensus 337 ~e~l~~kl~~e~~~RrkLhN~lqELKG 363 (943)
+.+++.++.+-+....+|...|-+.=+
T Consensus 156 ~~el~~K~~~~k~~~e~Ll~~LgeFLe 182 (268)
T PF11802_consen 156 FQELKTKIEKIKEYKEKLLSFLGEFLE 182 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777777888777766544
No 320
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=66.67 E-value=1.9 Score=55.01 Aligned_cols=20 Identities=35% Similarity=0.561 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002276 700 LKIKSLQDKVKELETQLLVE 719 (943)
Q Consensus 700 ~~i~~LqekikeLE~qL~~e 719 (943)
..|..|..+|.+||.+|..+
T Consensus 743 ~~i~kLE~ri~eLE~~Le~E 762 (859)
T PF01576_consen 743 KQIAKLEARIRELEEELESE 762 (859)
T ss_dssp --------------------
T ss_pred cHHHHHhHHHHHHHHHHHHH
Confidence 45667777777777777655
No 321
>PRK06921 hypothetical protein; Provisional
Probab=66.25 E-value=2.7 Score=46.32 Aligned_cols=20 Identities=35% Similarity=0.514 Sum_probs=16.8
Q ss_pred ceEEEeeCcccCcccccccc
Q 002276 440 NVCIFAYGQTGTGKTFTMEG 459 (943)
Q Consensus 440 NvcIFAYGQTGSGKTyTM~G 459 (943)
.-.|+-||++|+||||.+..
T Consensus 117 ~~~l~l~G~~G~GKThLa~a 136 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTA 136 (266)
T ss_pred CCeEEEECCCCCcHHHHHHH
Confidence 45688999999999999854
No 322
>PF13479 AAA_24: AAA domain
Probab=65.69 E-value=2.9 Score=44.19 Aligned_cols=20 Identities=35% Similarity=0.592 Sum_probs=17.0
Q ss_pred ceEEEeeCcccCcccccccc
Q 002276 440 NVCIFAYGQTGTGKTFTMEG 459 (943)
Q Consensus 440 NvcIFAYGQTGSGKTyTM~G 459 (943)
+..|+-||++|+|||++...
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~ 22 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAAS 22 (213)
T ss_pred ceEEEEECCCCCCHHHHHHh
Confidence 46789999999999998754
No 323
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=65.29 E-value=2.4e+02 Score=31.80 Aligned_cols=17 Identities=53% Similarity=0.911 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 002276 244 KEYQETWKSLQELQNEL 260 (943)
Q Consensus 244 ~E~~e~~~~l~~~q~el 260 (943)
+||++.|+.+.+.|+.|
T Consensus 23 ~eCEe~wk~me~~q~kL 39 (268)
T PF11802_consen 23 KECEELWKDMEECQNKL 39 (268)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444444
No 324
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=65.22 E-value=2.7e+02 Score=33.89 Aligned_cols=45 Identities=22% Similarity=0.303 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 210 DYERLKMSYECQKKELTEAKRTLEELKRENQLKNKEYQETWKSLQ 254 (943)
Q Consensus 210 e~~kL~~~~e~qk~eL~~~e~~i~eLe~en~~K~~E~~e~~~~l~ 254 (943)
|..-|+.+.+.+++++..++.+|..++.+.+.+..++........
T Consensus 275 el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~ 319 (511)
T PF09787_consen 275 ELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFR 319 (511)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 355677777777777777777777777777655555555444443
No 325
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=65.12 E-value=77 Score=29.45 Aligned_cols=38 Identities=26% Similarity=0.360 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 211 YERLKMSYECQKKELTEAKRTLEELKRENQLKNKEYQE 248 (943)
Q Consensus 211 ~~kL~~~~e~qk~eL~~~e~~i~eLe~en~~K~~E~~e 248 (943)
+++|..+|++--....-++-.|+||+..|..-..|.+.
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~ 43 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQN 43 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777777777777777777777777654444443
No 326
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=64.81 E-value=2.5e+02 Score=35.89 Aligned_cols=16 Identities=19% Similarity=0.241 Sum_probs=9.2
Q ss_pred CcchhHHHHHHHHHHH
Q 002276 206 GVKGDYERLKMSYECQ 221 (943)
Q Consensus 206 ~~~~e~~kL~~~~e~q 221 (943)
.+.++.++|+.+|++-
T Consensus 508 ~L~eK~~kLk~Efnkk 523 (762)
T PLN03229 508 VLMEKIEKLKDEFNKR 523 (762)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4555566666666543
No 327
>PF12004 DUF3498: Domain of unknown function (DUF3498); InterPro: IPR021887 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 433 to 538 amino acids in length. This domain is found associated with PF00616 from PFAM, PF00168 from PFAM. This domain has two conserved sequence motifs: DLQ and PLSFQNP. ; PDB: 3BXJ_B.
Probab=64.81 E-value=2.1 Score=51.16 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 214 LKMSYECQKKELTEAKRTLEELKREN 239 (943)
Q Consensus 214 L~~~~e~qk~eL~~~e~~i~eLe~en 239 (943)
.+++|..|++.|....++++|-|++.
T Consensus 374 YEqEI~~LkErL~~S~rkLeEyErrL 399 (495)
T PF12004_consen 374 YEQEIQSLKERLRMSHRKLEEYERRL 399 (495)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555554433
No 328
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=64.78 E-value=2.2 Score=43.62 Aligned_cols=28 Identities=29% Similarity=0.463 Sum_probs=20.4
Q ss_pred hhHHHhhCCcceEEEeeCcccCcccccc
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
.|...+-.|.+.+++-||+.|+|||+.|
T Consensus 10 ~l~~~l~~~~~~~~~l~G~rg~GKTsLl 37 (234)
T PF01637_consen 10 KLKELLESGPSQHILLYGPRGSGKTSLL 37 (234)
T ss_dssp HHHHCHHH--SSEEEEEESTTSSHHHHH
T ss_pred HHHHHHHhhcCcEEEEEcCCcCCHHHHH
Confidence 3444444566889999999999999987
No 329
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=64.74 E-value=2.6e+02 Score=32.10 Aligned_cols=25 Identities=20% Similarity=0.201 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHhHHHh
Q 002276 336 LYEHLKIKFIEGTKERKELYNKVLE 360 (943)
Q Consensus 336 ~~e~l~~kl~~e~~~RrkLhN~lqE 360 (943)
..+.|..++-+-....|.|.-+|..
T Consensus 179 lvN~L~Kqm~~l~~eKr~Lq~~l~~ 203 (310)
T PF09755_consen 179 LVNRLWKQMDKLEAEKRRLQEKLEQ 203 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3344444444445555666555543
No 330
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=64.65 E-value=2.1e+02 Score=30.93 Aligned_cols=35 Identities=23% Similarity=0.206 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 284 WFSSLRDLTRRLKIMKMEHINLFEEALAYKKCAAE 318 (943)
Q Consensus 284 l~~~L~~L~~~l~~~k~e~~~l~~e~~~~~~~~~~ 318 (943)
+...++.+...++.+...-.++++....|...+..
T Consensus 114 LeEe~~~~~~nlk~l~~~ee~~~q~~d~~e~~ik~ 148 (205)
T KOG1003|consen 114 LEEDLRILDSNLKSLSAKEEKLEQKEEKYEEELKE 148 (205)
T ss_pred HHHHHHHhHhHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 44555555555555555555555555555554433
No 331
>KOG0240 consensus Kinesin (SMY1 subfamily) [Cytoskeleton]
Probab=64.57 E-value=2.4e+02 Score=34.91 Aligned_cols=10 Identities=30% Similarity=0.654 Sum_probs=4.7
Q ss_pred CCCccccccc
Q 002276 67 PISNELVDGK 76 (943)
Q Consensus 67 ~~~~~~~~~~ 76 (943)
||.++++.|.
T Consensus 73 ~Iv~dVL~GY 82 (607)
T KOG0240|consen 73 PIVDDVLLGY 82 (607)
T ss_pred HHHHHHhccc
Confidence 4444455444
No 332
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=64.56 E-value=3.7 Score=46.57 Aligned_cols=28 Identities=25% Similarity=0.266 Sum_probs=20.2
Q ss_pred hhhHHHhhCCcceEEEeeCcccCcccccc
Q 002276 429 APFANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 429 ~pLV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
..++..++.+. ..|+-.|.||||||++|
T Consensus 138 ~~~L~~~v~~~-~~ilI~G~tGSGKTTll 165 (319)
T PRK13894 138 REAIIAAVRAH-RNILVIGGTGSGKTTLV 165 (319)
T ss_pred HHHHHHHHHcC-CeEEEECCCCCCHHHHH
Confidence 35566666653 55666699999999876
No 333
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=64.50 E-value=1.4e+02 Score=31.00 Aligned_cols=40 Identities=23% Similarity=0.297 Sum_probs=20.9
Q ss_pred chhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 002276 208 KGDYERLKMSYECQKKELTEA-KRTLEELKRENQLKNKEYQ 247 (943)
Q Consensus 208 ~~e~~kL~~~~e~qk~eL~~~-e~~i~eLe~en~~K~~E~~ 247 (943)
+.....+...+..++.++..+ +..+.++..++..-..|++
T Consensus 50 e~~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie 90 (177)
T PF07798_consen 50 ENQEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIE 90 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555566666666554 4445555555544444443
No 334
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=64.40 E-value=4.6 Score=43.24 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=19.2
Q ss_pred HHHhhCCcceEEEeeCcccCcccccc
Q 002276 432 ANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 432 V~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
+...+......++-+|++|||||+++
T Consensus 35 l~~~~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 35 LEYGLSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred HHHHHhcCCCEEEEEcCCCCCHHHHH
Confidence 33334444567888999999999887
No 335
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=64.22 E-value=2.6 Score=44.44 Aligned_cols=16 Identities=50% Similarity=0.625 Sum_probs=14.2
Q ss_pred EEEeeCcccCcccccc
Q 002276 442 CIFAYGQTGTGKTFTM 457 (943)
Q Consensus 442 cIFAYGQTGSGKTyTM 457 (943)
.|+-.|+||+|||.|.
T Consensus 3 vi~lvGptGvGKTTt~ 18 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTI 18 (196)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCchHhHH
Confidence 4777899999999996
No 336
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=64.12 E-value=35 Score=35.00 Aligned_cols=65 Identities=22% Similarity=0.335 Sum_probs=46.7
Q ss_pred ChHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 656 DTSELLRYKQMVEKTKQELKSRDVQSKRMEDTIHGLDLKL--KDKDLKIKSLQDKVKELETQLLVER 720 (943)
Q Consensus 656 ~~~el~rlk~~ie~LK~eL~~~~~q~~~lE~~i~~l~~kl--~e~d~~i~~LqekikeLE~qL~~er 720 (943)
+..++..+..++..|+.++..+....+.++.++..+...+ .+....|..++.++..++.+|...+
T Consensus 70 s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~ 136 (169)
T PF07106_consen 70 SPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLR 136 (169)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456667777788888888888888888888877776544 3455567778888888887776544
No 337
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=63.61 E-value=1.5e+02 Score=29.80 Aligned_cols=48 Identities=10% Similarity=0.169 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 284 WFSSLRDLTRRLKIMKMEHINLFEEALAYKKCAAEISEASSTIQSKIN 331 (943)
Q Consensus 284 l~~~L~~L~~~l~~~k~e~~~l~~e~~~~~~~~~~i~~~~~~lq~~i~ 331 (943)
+...|+.+..++.++..-.....+++...+..+..+..-...++..+.
T Consensus 66 LsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~ 113 (126)
T PF07889_consen 66 LSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVE 113 (126)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 344455555555444444344444444444444444443333443333
No 338
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=63.39 E-value=2.9 Score=39.19 Aligned_cols=16 Identities=31% Similarity=0.501 Sum_probs=14.3
Q ss_pred EEEeeCcccCcccccc
Q 002276 442 CIFAYGQTGTGKTFTM 457 (943)
Q Consensus 442 cIFAYGQTGSGKTyTM 457 (943)
+|+-.|.+|||||+..
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 5889999999999885
No 339
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=63.30 E-value=3.7 Score=42.52 Aligned_cols=19 Identities=37% Similarity=0.546 Sum_probs=15.7
Q ss_pred eEEEeeCcccCcccccccc
Q 002276 441 VCIFAYGQTGTGKTFTMEG 459 (943)
Q Consensus 441 vcIFAYGQTGSGKTyTM~G 459 (943)
-.++-||++|+||||...+
T Consensus 48 ~~l~l~G~~G~GKThLa~a 66 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVA 66 (178)
T ss_dssp -EEEEEESTTSSHHHHHHH
T ss_pred eEEEEEhhHhHHHHHHHHH
Confidence 3588899999999999754
No 340
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.09 E-value=3.5e+02 Score=33.69 Aligned_cols=57 Identities=14% Similarity=0.257 Sum_probs=31.3
Q ss_pred hhHhhhhcccccccccccccC-------ccCcc-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 183 MLLEAKRFSQLEECESTKDSG-------ERGVK-------GDYERLKMSYECQKKELTEAKRTLEELKREN 239 (943)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~-------~e~~kL~~~~e~qk~eL~~~e~~i~eLe~en 239 (943)
.+.+++|+.-.+-|-++-|.. |-.+- -+.+-|...+|.+.++-.-+-++|.++++-+
T Consensus 299 ~~~~s~~~~s~~~~~~~S~~~~~~~~~~D~N~~~Q~~~~~~~~~~~~Tr~Er~Er~~D~L~rri~~~~~~~ 369 (852)
T KOG4787|consen 299 PMIRSARLVTACTCQKVSDITFLMFCRCDGNAHLQLELAESQVQHLNTKIERLEKTNDHLNKKIVELEADC 369 (852)
T ss_pred hhhhhhhhhhhhccccchhHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhh
Confidence 567778887777775554433 22233 3333444444445555555566666666655
No 341
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=63.02 E-value=3.8e+02 Score=33.39 Aligned_cols=16 Identities=13% Similarity=0.075 Sum_probs=10.2
Q ss_pred ccceeEEeeccCCCCC
Q 002276 112 IQCSFEVSLENGIKGS 127 (943)
Q Consensus 112 ~~~~~~~~~~~~~~~~ 127 (943)
..+++++.++.+-+|.
T Consensus 83 ~~~~V~l~f~~~~~~~ 98 (650)
T TIGR03185 83 NPASITLTFSVVEGGK 98 (650)
T ss_pred CCeEEEEEEEEccCCc
Confidence 3567777777665554
No 342
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=62.99 E-value=2.8e+02 Score=34.19 Aligned_cols=21 Identities=14% Similarity=0.044 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 002276 213 RLKMSYECQKKELTEAKRTLE 233 (943)
Q Consensus 213 kL~~~~e~qk~eL~~~e~~i~ 233 (943)
.|...+++|..++..+++++.
T Consensus 592 ~l~~~k~~QlQ~l~~~~eer~ 612 (741)
T KOG4460|consen 592 LLCDQKKKQLQDLSYCREERK 612 (741)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444433
No 343
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=62.77 E-value=1.2e+02 Score=38.83 Aligned_cols=88 Identities=17% Similarity=0.176 Sum_probs=43.8
Q ss_pred CCCCeeeecCCcch-hhhHhhhhcccccccccccccC-ccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 168 DPVPVVSINEDYRE-PMLLEAKRFSQLEECESTKDSG-ERGVKGDYERLKMSYECQKKELTEAKRTLEELKRENQLKNKE 245 (943)
Q Consensus 168 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~kL~~~~e~qk~eL~~~e~~i~eLe~en~~K~~E 245 (943)
...|.+.+-.|.+. -.-++.|+...++..-+..-.+ -.+...+.+++...++.++.++++.+..++.+..+.+.+..+
T Consensus 468 ~l~p~Ykl~~G~~g~S~a~~iA~~~Glp~~ii~~A~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~ 547 (771)
T TIGR01069 468 TLSPTYKLLKGIPGESYAFEIAQRYGIPHFIIEQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKE 547 (771)
T ss_pred CCceEEEECCCCCCCcHHHHHHHHhCcCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666542 1223333333343331111100 112234555666666666666666666666666666666666
Q ss_pred HHHHHHHHHH
Q 002276 246 YQETWKSLQE 255 (943)
Q Consensus 246 ~~e~~~~l~~ 255 (943)
+++.+..+.+
T Consensus 548 l~~~~~~l~~ 557 (771)
T TIGR01069 548 LEQEMEELKE 557 (771)
T ss_pred HHHHHHHHHH
Confidence 6555555544
No 344
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=62.77 E-value=88 Score=28.51 Aligned_cols=37 Identities=27% Similarity=0.362 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 211 YERLKMSYECQKKELTEAKRTLEELKRENQLKNKEYQ 247 (943)
Q Consensus 211 ~~kL~~~~e~qk~eL~~~e~~i~eLe~en~~K~~E~~ 247 (943)
+++|..++.+-...++=++-.|+||+..|..-..|.+
T Consensus 6 ~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q 42 (79)
T COG3074 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQ 42 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHH
Confidence 4566677776666666666777777766655444443
No 345
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=62.35 E-value=3.8e+02 Score=33.05 Aligned_cols=16 Identities=19% Similarity=0.113 Sum_probs=9.9
Q ss_pred HHHHHHHHhHHHhhcC
Q 002276 348 TKERKELYNKVLELKG 363 (943)
Q Consensus 348 ~~~RrkLhN~lqELKG 363 (943)
..+|..|++.|.+.=.
T Consensus 160 ~~lr~~L~~~L~~~w~ 175 (593)
T PF06248_consen 160 SELRENLQYQLSEEWE 175 (593)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3666677777665543
No 346
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=62.26 E-value=14 Score=42.19 Aligned_cols=104 Identities=15% Similarity=0.174 Sum_probs=7.9
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccHHHHHHhhHhhhhhHH
Q 002276 206 GVKGDYERLKMSYECQKKELTEAKRTLEELKRENQLKNKEYQETWKSLQELQNELMRKSMHVGSLAFAIEGQVKEKSRWF 285 (943)
Q Consensus 206 ~~~~e~~kL~~~~e~qk~eL~~~e~~i~eLe~en~~K~~E~~e~~~~l~~~q~el~~~~~~v~sL~~~ie~~~~ek~kl~ 285 (943)
.+.|+...|+..++.+...+..+..++..|+..++.-...+.+....|..+...+..-..-+.++...|...........
T Consensus 32 ~I~eRLsaLEssv~sL~~SVs~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ 111 (326)
T PF04582_consen 32 PIRERLSALESSVASLSDSVSSLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHS 111 (326)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhh
Confidence 35677888888888888888888888888887765555555444444443333332222223333333333222222333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 286 SSLRDLTRRLKIMKMEHINLFEEA 309 (943)
Q Consensus 286 ~~L~~L~~~l~~~k~e~~~l~~e~ 309 (943)
..|..|+..+..+..+..+|...+
T Consensus 112 ssIS~Lqs~v~~lsTdvsNLksdV 135 (326)
T PF04582_consen 112 SSISDLQSSVSALSTDVSNLKSDV 135 (326)
T ss_dssp ------HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHhhhhhhhhhhhhhhhh
Confidence 444444444444444444443333
No 347
>PF13166 AAA_13: AAA domain
Probab=61.69 E-value=4e+02 Score=33.17 Aligned_cols=26 Identities=8% Similarity=0.142 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhHHHHHHHHHhHHHhh
Q 002276 336 LYEHLKIKFIEGTKERKELYNKVLEL 361 (943)
Q Consensus 336 ~~e~l~~kl~~e~~~RrkLhN~lqEL 361 (943)
.+.++..++.........+-..|..+
T Consensus 446 ~i~~l~~~~~~~~~~~~~iN~~L~~~ 471 (712)
T PF13166_consen 446 EIKELEAQLKNTEPAADRINEELKRL 471 (712)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 33444444444444445555556666
No 348
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=61.67 E-value=4.3 Score=45.51 Aligned_cols=29 Identities=24% Similarity=0.261 Sum_probs=21.7
Q ss_pred chhhHHHhhCCcceEEEeeCcccCcccccc
Q 002276 428 TAPFANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 428 v~pLV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
...++..++.+ ...|+-.|.||||||.+|
T Consensus 121 ~~~~L~~~v~~-~~~ilI~G~tGSGKTTll 149 (299)
T TIGR02782 121 QRDVLREAVLA-RKNILVVGGTGSGKTTLA 149 (299)
T ss_pred HHHHHHHHHHc-CCeEEEECCCCCCHHHHH
Confidence 34566666654 456788999999999997
No 349
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=61.42 E-value=23 Score=42.16 Aligned_cols=16 Identities=44% Similarity=0.762 Sum_probs=13.9
Q ss_pred EEEeeCcccCcccccc
Q 002276 442 CIFAYGQTGTGKTFTM 457 (943)
Q Consensus 442 cIFAYGQTGSGKTyTM 457 (943)
.|+-||++|||||++.
T Consensus 219 gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 219 GVILYGPPGTGKTLLA 234 (438)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4777999999999886
No 350
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=61.01 E-value=1.9e+02 Score=36.64 Aligned_cols=39 Identities=13% Similarity=0.198 Sum_probs=26.2
Q ss_pred ccCccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 201 DSGERGVKGDYERLKMSYECQKKELTEAKRTLEELKREN 239 (943)
Q Consensus 201 ~~~~~~~~~e~~kL~~~~e~qk~eL~~~e~~i~eLe~en 239 (943)
.|-+..++.+.....+..+.+.+++.+++.++.+.+.+.
T Consensus 252 ~Yi~~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l 290 (726)
T PRK09841 252 NYLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKL 290 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566667777777777777777777777776666655
No 351
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=60.94 E-value=4.2 Score=48.47 Aligned_cols=62 Identities=23% Similarity=0.377 Sum_probs=40.1
Q ss_pred HHHhhCCcceEEEeeCcccCccccccccCC--------------CCCCccHHh---------HHHHHHHHHhhcccceeE
Q 002276 432 ANSVLDGYNVCIFAYGQTGTGKTFTMEGTK--------------EARGVNFRT---------LEELFRIIKEREKLYRYD 488 (943)
Q Consensus 432 V~svLdGyNvcIFAYGQTGSGKTyTM~G~~--------------e~~GIIPRa---------l~~LF~~i~~~~~~~~y~ 488 (943)
+..+.+|.+. +|.+|||||||+...++- ...|.-|++ +.+||..... ..|.
T Consensus 105 ip~i~~Grdl--~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k----~~~~ 178 (482)
T KOG0335|consen 105 IPIISGGRDL--MACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARK----FSYL 178 (482)
T ss_pred cceeecCCce--EEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHh----hccc
Confidence 4456677765 999999999999987641 011222332 3566655443 5666
Q ss_pred EEEEEEEEecc
Q 002276 489 ISVSVLEVYNE 499 (943)
Q Consensus 489 V~VSflEIYNE 499 (943)
-.+-.+.+|+.
T Consensus 179 s~~~~~~~ygg 189 (482)
T KOG0335|consen 179 SGMKSVVVYGG 189 (482)
T ss_pred ccceeeeeeCC
Confidence 77778888966
No 352
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=60.70 E-value=4.1e+02 Score=33.16 Aligned_cols=7 Identities=29% Similarity=0.349 Sum_probs=3.3
Q ss_pred hhhhccc
Q 002276 500 QIRDLLA 506 (943)
Q Consensus 500 ~I~DLL~ 506 (943)
.+++.|.
T Consensus 619 ~~~~~l~ 625 (650)
T TIGR03185 619 KHYNLLK 625 (650)
T ss_pred HHHHHHH
Confidence 3455553
No 353
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=60.60 E-value=1.1e+02 Score=37.81 Aligned_cols=28 Identities=11% Similarity=-0.078 Sum_probs=22.0
Q ss_pred CcccchHHhhhhcCCCcceeEEEecCCC
Q 002276 599 KNSKLTHLLQDSLGGDSKTLMFVQISPN 626 (943)
Q Consensus 599 RdSKLTrLLQDSLGGNSKTlMIv~ISPs 626 (943)
-+|++|++|..+|++=....+=+.++-.
T Consensus 471 ~~~~~~~~i~~~l~~i~~~~v~~~~~G~ 498 (555)
T TIGR03545 471 GSFEATKYILQVLKKIDVLTVDADIKGI 498 (555)
T ss_pred CccHHHHHHHHHHhhCCeeEEEEeeccc
Confidence 3689999999999997777766666543
No 354
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=60.57 E-value=3.7 Score=38.45 Aligned_cols=15 Identities=47% Similarity=0.585 Sum_probs=13.3
Q ss_pred EEeeCcccCcccccc
Q 002276 443 IFAYGQTGTGKTFTM 457 (943)
Q Consensus 443 IFAYGQTGSGKTyTM 457 (943)
|+-||+.|+|||+..
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 577999999999985
No 355
>PRK10698 phage shock protein PspA; Provisional
Probab=60.25 E-value=2.6e+02 Score=30.43 Aligned_cols=142 Identities=9% Similarity=0.112 Sum_probs=0.0
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhh---hhhccHHHHHHhhHhh
Q 002276 206 GVKGDYERLKMSYECQKKELTEAKRTLEELKRENQLKNKEYQETWKSLQE--LQNELMRKS---MHVGSLAFAIEGQVKE 280 (943)
Q Consensus 206 ~~~~e~~kL~~~~e~qk~eL~~~e~~i~eLe~en~~K~~E~~e~~~~l~~--~q~el~~~~---~~v~sL~~~ie~~~~e 280 (943)
++++....++..+..+......+++++.+++.....-......++..-.+ ....|.++. ..+..|+.+++.....
T Consensus 35 em~~~l~~~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~~~~~~~~l~~~~~~~~~~ 114 (222)
T PRK10698 35 EMEDTLVEVRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQKLTDLIATLEHEVTLVDET 114 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 002276 281 KSRWFSSLRDLTRRLKIMKMEHINLFEEALAYKKCAAEISEASSTIQSKINHQVQLYEHLKIKFIEGTKE 350 (943)
Q Consensus 281 k~kl~~~L~~L~~~l~~~k~e~~~l~~e~~~~~~~~~~i~~~~~~lq~~i~~~~~~~e~l~~kl~~e~~~ 350 (943)
..++...+..|+.++..++.....|..... .......+.+....+.. ......++.+.+++.+.+..
T Consensus 115 ~~~L~~~l~~L~~ki~eak~k~~~L~aR~~-~A~a~~~~~~~~~~~~~--~~a~~~f~rmE~ki~~~Ea~ 181 (222)
T PRK10698 115 LARMKKEIGELENKLSETRARQQALMLRHQ-AASSSRDVRRQLDSGKL--DEAMARFESFERRIDQMEAE 181 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCc--chHHHHHHHHHHHHHHHHHH
No 356
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=60.15 E-value=1.6e+02 Score=37.67 Aligned_cols=89 Identities=20% Similarity=0.143 Sum_probs=46.5
Q ss_pred CCCCCeeeecCCcc-hhhhHhhhhcccccccccccccCc-cCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 167 QDPVPVVSINEDYR-EPMLLEAKRFSQLEECESTKDSGE-RGVKGDYERLKMSYECQKKELTEAKRTLEELKRENQLKNK 244 (943)
Q Consensus 167 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~e~~kL~~~~e~qk~eL~~~e~~i~eLe~en~~K~~ 244 (943)
....|.+.+-.|.+ .-.-++.||...++..-+..-.+- .+-..+.++|...++.++.++++.+..++++..+.+...+
T Consensus 472 ~~l~~~Ykl~~G~~g~S~a~~iA~~~Glp~~ii~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~ 551 (782)
T PRK00409 472 ETLRPTYRLLIGIPGKSNAFEIAKRLGLPENIIEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKE 551 (782)
T ss_pred CcCcEEEEEeeCCCCCcHHHHHHHHhCcCHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666655554 222344444444554422221110 1112356666666666666666666666666666666666
Q ss_pred HHHHHHHHHHH
Q 002276 245 EYQETWKSLQE 255 (943)
Q Consensus 245 E~~e~~~~l~~ 255 (943)
++++.+..+.+
T Consensus 552 ~l~~~~~~l~~ 562 (782)
T PRK00409 552 ELEEKKEKLQE 562 (782)
T ss_pred HHHHHHHHHHH
Confidence 66655555544
No 357
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=60.04 E-value=4.1 Score=42.67 Aligned_cols=27 Identities=26% Similarity=0.322 Sum_probs=19.9
Q ss_pred hHHHhhCCcceEEEeeCcccCcccccc
Q 002276 431 FANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 431 LV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
.|..++...+-.++..|..||||||+|
T Consensus 9 a~~~~l~~~~~~~~l~G~aGtGKT~~l 35 (196)
T PF13604_consen 9 AVRAILTSGDRVSVLQGPAGTGKTTLL 35 (196)
T ss_dssp HHHHHHHCTCSEEEEEESTTSTHHHHH
T ss_pred HHHHHHhcCCeEEEEEECCCCCHHHHH
Confidence 456666555445556899999999997
No 358
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=59.86 E-value=70 Score=32.54 Aligned_cols=77 Identities=13% Similarity=0.174 Sum_probs=34.5
Q ss_pred HHHhHhhccccccccccCChHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 002276 638 NFASRVRGIELGAAKKQLDTSELLRYKQMVEKTKQELKSRDVQSKRMEDTIHGLDLKLKDKDLKIKSLQDKVKELETQ 715 (943)
Q Consensus 638 rFAsRak~Ik~~~~~~~~~~~el~rlk~~ie~LK~eL~~~~~q~~~lE~~i~~l~~kl~e~d~~i~~LqekikeLE~q 715 (943)
+|.+|...+...|..... .-.+..+-.....|...|.....++..++.++...+..++.....+.+|+..++.++.+
T Consensus 1 rl~~~l~~~~~Pp~~~~~-~~~~e~ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e 77 (160)
T PF13094_consen 1 RLLRRLARLPFPPQKRED-SFDYEQLLDRKRALERQLAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALERE 77 (160)
T ss_pred ChHhhCCCCCCCcccccc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777666555221 11111222222333334443334444555555544444444444444444444444433
No 359
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=59.52 E-value=2.6e+02 Score=37.34 Aligned_cols=17 Identities=18% Similarity=0.536 Sum_probs=10.4
Q ss_pred hhhhcccccccceeeEe
Q 002276 880 QHFRRGGVNVGMQQLRV 896 (943)
Q Consensus 880 ~~~~~~~~~~~~~~~~~ 896 (943)
..++++||.+......|
T Consensus 1067 ~~F~~~GIeIPfPq~~v 1083 (1109)
T PRK10929 1067 AGFREHGIDMPFPPFQM 1083 (1109)
T ss_pred HHHHHCCCcCCCCCeEE
Confidence 45677788776554333
No 360
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=59.46 E-value=5.7 Score=38.80 Aligned_cols=29 Identities=24% Similarity=0.285 Sum_probs=19.7
Q ss_pred hhHHHhhCCcceEEEeeCcccCcccccccc
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTFTMEG 459 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTyTM~G 459 (943)
.++..++++. .-++..|.||||||.++..
T Consensus 15 ~~~~~~~~~~-~~~~i~~~~GsGKT~~~~~ 43 (201)
T smart00487 15 EAIEALLSGL-RDVILAAPTGSGKTLAALL 43 (201)
T ss_pred HHHHHHHcCC-CcEEEECCCCCchhHHHHH
Confidence 3455555553 3446678999999998754
No 361
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=59.29 E-value=3.7 Score=47.77 Aligned_cols=39 Identities=26% Similarity=0.575 Sum_probs=29.0
Q ss_pred EEEeeCcccCccccccccCCCCCCccHHhHHHHHHHHHhhcccceeEEEEEEEEEecch
Q 002276 442 CIFAYGQTGTGKTFTMEGTKEARGVNFRTLEELFRIIKEREKLYRYDISVSVLEVYNEQ 500 (943)
Q Consensus 442 cIFAYGQTGSGKTyTM~G~~e~~GIIPRal~~LF~~i~~~~~~~~y~V~VSflEIYNE~ 500 (943)
-|+-||.+||||||+. +.+|+..+ .-.|+++.+|-|+=.
T Consensus 32 ~~~iyG~sgTGKT~~~--------------r~~l~~~n------~~~vw~n~~ecft~~ 70 (438)
T KOG2543|consen 32 IVHIYGHSGTGKTYLV--------------RQLLRKLN------LENVWLNCVECFTYA 70 (438)
T ss_pred eEEEeccCCCchhHHH--------------HHHHhhcC------CcceeeehHHhccHH
Confidence 3689999999999996 56676552 224888999988543
No 362
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=59.19 E-value=3.1 Score=51.90 Aligned_cols=34 Identities=18% Similarity=0.278 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHH---HHHHHHHHHH
Q 002276 216 MSYECQKKELTEAKRT---LEELKREN---QLKNKEYQET 249 (943)
Q Consensus 216 ~~~e~qk~eL~~~e~~---i~eLe~en---~~K~~E~~e~ 249 (943)
.++..++.|++.++.+ ...++.++ +.|..+....
T Consensus 291 ~~a~~LrDElD~lR~~a~r~~klE~~ve~YKkKLed~~~l 330 (713)
T PF05622_consen 291 REARALRDELDELREKADRADKLENEVEKYKKKLEDLEDL 330 (713)
T ss_dssp ----------------------------------------
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455566666443 33333333 4555554444
No 363
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=59.18 E-value=1.5e+02 Score=33.54 Aligned_cols=16 Identities=19% Similarity=0.281 Sum_probs=9.8
Q ss_pred HHhHHHHHHHHHhHHH
Q 002276 344 FIEGTKERKELYNKVL 359 (943)
Q Consensus 344 l~~e~~~RrkLhN~lq 359 (943)
|.+-....|||.+-|+
T Consensus 151 FvDINiQN~KLEsLLq 166 (305)
T PF15290_consen 151 FVDINIQNKKLESLLQ 166 (305)
T ss_pred HhhhhhhHhHHHHHHH
Confidence 3344566677777666
No 364
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=58.83 E-value=3.6 Score=42.70 Aligned_cols=17 Identities=29% Similarity=0.559 Sum_probs=13.1
Q ss_pred EEEeeCcccCccccccc
Q 002276 442 CIFAYGQTGTGKTFTME 458 (943)
Q Consensus 442 cIFAYGQTGSGKTyTM~ 458 (943)
-++.+|.||||||.++.
T Consensus 40 h~li~G~tgsGKS~~l~ 56 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLR 56 (205)
T ss_dssp SEEEE--TTSSHHHHHH
T ss_pred eEEEEcCCCCCccHHHH
Confidence 57899999999999973
No 365
>PRK10869 recombination and repair protein; Provisional
Probab=58.79 E-value=4.3e+02 Score=32.55 Aligned_cols=26 Identities=8% Similarity=0.029 Sum_probs=18.2
Q ss_pred cccCCCCCCccHHhHHHHHHHHHhhc
Q 002276 457 MEGTKEARGVNFRTLEELFRIIKERE 482 (943)
Q Consensus 457 M~G~~e~~GIIPRal~~LF~~i~~~~ 482 (943)
+.=+..+.||=+.+...+++.+....
T Consensus 456 li~DEpd~gld~~~~~~v~~~l~~l~ 481 (553)
T PRK10869 456 LIFDEVDVGISGPTAAVVGKLLRQLG 481 (553)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHh
Confidence 33355567888888888888877653
No 366
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=58.66 E-value=3.8e+02 Score=31.85 Aligned_cols=27 Identities=15% Similarity=0.079 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 209 GDYERLKMSYECQKKELTEAKRTLEEL 235 (943)
Q Consensus 209 ~e~~kL~~~~e~qk~eL~~~e~~i~eL 235 (943)
.-++.|..+++.++.+++.++.+.+.+
T Consensus 291 D~~~~L~k~vQ~L~AQle~~R~q~e~~ 317 (593)
T KOG4807|consen 291 DGHEALEKEVQALRAQLEAWRLQGEAP 317 (593)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhccCc
Confidence 334555555666666665555444333
No 367
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=58.58 E-value=1.9e+02 Score=28.42 Aligned_cols=18 Identities=17% Similarity=0.276 Sum_probs=8.4
Q ss_pred hccHHHHHHhhHhhhhhH
Q 002276 267 VGSLAFAIEGQVKEKSRW 284 (943)
Q Consensus 267 v~sL~~~ie~~~~ek~kl 284 (943)
+.+|+..+++.+.....|
T Consensus 18 La~Le~slE~~K~S~~eL 35 (107)
T PF09304_consen 18 LASLERSLEDEKTSQGEL 35 (107)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHH
Confidence 445555555544433333
No 368
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=58.44 E-value=2.1e+02 Score=30.33 Aligned_cols=34 Identities=21% Similarity=0.274 Sum_probs=26.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 208 KGDYERLKMSYECQKKELTEAKRTLEELKRENQL 241 (943)
Q Consensus 208 ~~e~~kL~~~~e~qk~eL~~~e~~i~eLe~en~~ 241 (943)
......+...++.+.+++..++.++.+++.++..
T Consensus 61 s~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~ 94 (188)
T PF03962_consen 61 SQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEE 94 (188)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888888888888888888776643
No 369
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=58.37 E-value=14 Score=46.33 Aligned_cols=18 Identities=33% Similarity=0.495 Sum_probs=15.9
Q ss_pred ceEEEeeCcccCcccccc
Q 002276 440 NVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 440 NvcIFAYGQTGSGKTyTM 457 (943)
|.-++..|.||||||++|
T Consensus 434 ~~n~~I~G~tGsGKS~~~ 451 (785)
T TIGR00929 434 LGHTLIFGPTGSGKTTLL 451 (785)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 666788899999999998
No 370
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=58.24 E-value=2.6e+02 Score=29.78 Aligned_cols=8 Identities=13% Similarity=0.248 Sum_probs=3.7
Q ss_pred hhHhhhhc
Q 002276 183 MLLEAKRF 190 (943)
Q Consensus 183 ~~~~~~~~ 190 (943)
.|-+.||+
T Consensus 48 ~La~~Gki 55 (201)
T KOG4603|consen 48 QLAQQGKI 55 (201)
T ss_pred HHHHcCch
Confidence 44444443
No 371
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=58.22 E-value=3.9e+02 Score=31.94 Aligned_cols=25 Identities=20% Similarity=0.028 Sum_probs=13.7
Q ss_pred HHhhCCcceEEEeeCcccCcccccc
Q 002276 433 NSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 433 ~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
.+.|.|.|+.|-+.--+-.||..--
T Consensus 212 ~~tLaGs~g~it~~d~d~~~~~~iA 236 (459)
T KOG0288|consen 212 ISTLAGSLGNITSIDFDSDNKHVIA 236 (459)
T ss_pred hhhhhccCCCcceeeecCCCceEEe
Confidence 3456666666655555555554433
No 372
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=58.09 E-value=94 Score=31.86 Aligned_cols=15 Identities=27% Similarity=0.335 Sum_probs=9.5
Q ss_pred HHHHhHHHHHHHHHh
Q 002276 342 IKFIEGTKERKELYN 356 (943)
Q Consensus 342 ~kl~~e~~~RrkLhN 356 (943)
.++..+-..||+++|
T Consensus 155 ~~~~k~w~kRKri~k 169 (169)
T PF07106_consen 155 KKWRKEWKKRKRICK 169 (169)
T ss_pred HHHHHHHHHHHHHhC
Confidence 355566677777654
No 373
>PHA03011 hypothetical protein; Provisional
Probab=58.05 E-value=54 Score=31.72 Aligned_cols=89 Identities=17% Similarity=0.310 Sum_probs=60.2
Q ss_pred EEecCCCCcC-----hHhhHHHHHHHhHhhccccccccccCChHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Q 002276 620 FVQISPNEND-----LSETLCSLNFASRVRGIELGAAKKQLDTSELLRYKQMVEKTKQELKSRDVQSKRMEDTIHGLDLK 694 (943)
Q Consensus 620 Iv~ISPs~~~-----~~ETLsTLrFAsRak~Ik~~~~~~~~~~~el~rlk~~ie~LK~eL~~~~~q~~~lE~~i~~l~~k 694 (943)
|++++|-..+ -+|-+++|+|---. .......+...+...++.|..+-..+.....-+++.+..++.-
T Consensus 22 iIN~p~y~sN~LnkfddEYLanL~f~P~q--------i~dfk~GD~Nai~e~ldeL~~qYN~L~dEYn~i~Ne~k~~~~i 93 (120)
T PHA03011 22 IINIPPYESNILNKFDDEYLANLIFEPEQ--------IFDFKEGDINAIIEILDELIAQYNELLDEYNLIENEIKDLEII 93 (120)
T ss_pred HhcCCcccchHHHhccHHHHHhhhcCHHH--------HhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567774443 36778888884221 1222334455556666677766666666667778888888888
Q ss_pred HHhHHHHHHHHHHHHHHHHHHH
Q 002276 695 LKDKDLKIKSLQDKVKELETQL 716 (943)
Q Consensus 695 l~e~d~~i~~LqekikeLE~qL 716 (943)
+++.+.+|..|..++..|..++
T Consensus 94 IQdn~d~I~~LraeIDkLK~ni 115 (120)
T PHA03011 94 IQDNDDEIHFLRAEIDKLKENI 115 (120)
T ss_pred HHhchHHHHHHHHHHHHHHHHH
Confidence 8888888888888888887765
No 374
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=57.96 E-value=5.3 Score=41.17 Aligned_cols=29 Identities=28% Similarity=0.391 Sum_probs=20.4
Q ss_pred chhhHHHhhCCcceEEEeeCcccCcccccc
Q 002276 428 TAPFANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 428 v~pLV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
+.+++..++.. ...|.-.|.||||||.+|
T Consensus 14 ~~~~l~~~v~~-g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 14 QAAYLWLAVEA-RKNILISGGTGSGKTTLL 42 (186)
T ss_pred HHHHHHHHHhC-CCEEEEECCCCCCHHHHH
Confidence 34566655553 344667799999999987
No 375
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=57.86 E-value=5.5e+02 Score=34.90 Aligned_cols=21 Identities=19% Similarity=0.406 Sum_probs=11.3
Q ss_pred ccceeeeeecCCCceeeecCC
Q 002276 74 DGKSMLGFSLTSPDLVICGGS 94 (943)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~ 94 (943)
.+-..|-|-=+---.|||.-+
T Consensus 77 ~AqvkL~f~~~~G~~~~~~R~ 97 (1294)
T KOG0962|consen 77 RAQVKLAFTDVNGETMICTRT 97 (1294)
T ss_pred hheeeeeeecCCCcEEEeehh
Confidence 444555555555555666444
No 376
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=57.84 E-value=84 Score=28.53 Aligned_cols=45 Identities=31% Similarity=0.341 Sum_probs=24.6
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 002276 673 ELKSRDVQSKRMEDTIHGLDLKLKDKDLKIKSLQDKVKELETQLL 717 (943)
Q Consensus 673 eL~~~~~q~~~lE~~i~~l~~kl~e~d~~i~~LqekikeLE~qL~ 717 (943)
.++.++.++..+..+...|..+--.....|+.|+.++.++|.++.
T Consensus 6 ~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~ 50 (74)
T PF12329_consen 6 KLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIK 50 (74)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555544444445556666666666665553
No 377
>PF01540 Lipoprotein_7: Adhesin lipoprotein; InterPro: IPR002520 This family consists of the p50 and variable adherence-associated antigen (Vaa) adhesins from Mycoplasma hominis. M. hominis is a mycoplasma associated with human urogenital diseases, pneumonia, and septic arthritis []. An adhesin is a cell surface molecule that mediates adhesion to other cells or to the surrounding surface or substrate. The Vaa antigen is a 50kDa surface lipoprotein that has four tandem repetitive DNA sequences encoding a periodic peptide structure, and is highly immunogenic in the human host []. p50 is also a 50kDa lipoprotein, having three repeats A,B and C, that may be a tetramer of 191kDa in its native environment [].
Probab=57.59 E-value=3.3e+02 Score=30.83 Aligned_cols=36 Identities=17% Similarity=0.231 Sum_probs=19.5
Q ss_pred ccCcchhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Q 002276 204 ERGVKGDYERLKMSYECQKK---ELTEAKRTLEELKREN 239 (943)
Q Consensus 204 ~~~~~~e~~kL~~~~e~qk~---eL~~~e~~i~eLe~en 239 (943)
|.++.++++|+++-++.|.+ +.-++.+.+++..++.
T Consensus 117 ~k~lAeeNqKIq~gi~EL~Kl~~e~~~l~kTi~~TIa~l 155 (353)
T PF01540_consen 117 DKKLAEENQKIQNGIEELKKLSNEAFELSKTINKTIAKL 155 (353)
T ss_pred HHHHHHHHHHHHhhHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 45567777777766666554 3333444444444444
No 378
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=57.48 E-value=2.3e+02 Score=29.47 Aligned_cols=100 Identities=20% Similarity=0.214 Sum_probs=0.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccHHHHHHhhHhhhhhHHH
Q 002276 207 VKGDYERLKMSYECQKKELTEAKRTLEELKRENQLKNKEYQETWKSLQELQNELMRKSMHVGSLAFAIEGQVKEKSRWFS 286 (943)
Q Consensus 207 ~~~e~~kL~~~~e~qk~eL~~~e~~i~eLe~en~~K~~E~~e~~~~l~~~q~el~~~~~~v~sL~~~ie~~~~ek~kl~~ 286 (943)
+.++++.|...++.-+......+.++.+++...+...+++......+...+..|..+ +.++...+....+....+..
T Consensus 55 L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~---~~~~~~q~~rlee~e~~l~~ 131 (158)
T PF09744_consen 55 LREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKDLQSQVEQLEEENRQLELK---LKNLSDQSSRLEEREAELKK 131 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhhhhccccchhHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002276 287 SLRDLTRRLKIMKMEHINLFEEA 309 (943)
Q Consensus 287 ~L~~L~~~l~~~k~e~~~l~~e~ 309 (943)
....+..+-..+-..+....+..
T Consensus 132 e~~~l~er~~e~l~~~~e~ver~ 154 (158)
T PF09744_consen 132 EYNRLHERERELLRKLKEHVERQ 154 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
No 379
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=57.35 E-value=3.7e+02 Score=31.40 Aligned_cols=6 Identities=50% Similarity=0.877 Sum_probs=2.7
Q ss_pred hcCCEE
Q 002276 361 LKGNIR 366 (943)
Q Consensus 361 LKGNIR 366 (943)
|+|.|.
T Consensus 298 Lk~pvt 303 (561)
T KOG1103|consen 298 LKGPVT 303 (561)
T ss_pred ccCcee
Confidence 445443
No 380
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=57.33 E-value=5.4e+02 Score=33.60 Aligned_cols=22 Identities=14% Similarity=-0.067 Sum_probs=17.5
Q ss_pred ecCCcchhhhHhhhhccccccc
Q 002276 175 INEDYREPMLLEAKRFSQLEEC 196 (943)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~ 196 (943)
+|.....+.||.+|=+|-.+-.
T Consensus 139 ln~k~i~~~LL~sgt~G~~~~t 160 (984)
T COG4717 139 LNSKGILGYLLFSGTSGSPAST 160 (984)
T ss_pred hhHhhHHHHHHHhccCCCcchH
Confidence 7888888899999988866543
No 381
>PRK12705 hypothetical protein; Provisional
Probab=57.30 E-value=4.5e+02 Score=32.30 Aligned_cols=20 Identities=10% Similarity=0.091 Sum_probs=13.4
Q ss_pred HhHHHHHHHHHhHHHhhcCC
Q 002276 345 IEGTKERKELYNKVLELKGN 364 (943)
Q Consensus 345 ~~e~~~RrkLhN~lqELKGN 364 (943)
..+...|+-+-..+|-.-+.
T Consensus 173 ~a~~~A~~ii~~aiqr~a~~ 192 (508)
T PRK12705 173 EAERKAQNILAQAMQRIASE 192 (508)
T ss_pred HHHHHHHHHHHHHHHHhccc
Confidence 44566777777788766653
No 382
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=57.17 E-value=2.1e+02 Score=31.56 Aligned_cols=13 Identities=15% Similarity=-0.043 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 002276 220 CQKKELTEAKRTL 232 (943)
Q Consensus 220 ~qk~eL~~~e~~i 232 (943)
.+.++|..+-..|
T Consensus 77 kf~eeLrg~VGhi 89 (290)
T COG4026 77 KFFEELRGMVGHI 89 (290)
T ss_pred HHHHHHHHhhhhh
Confidence 3344444443333
No 383
>PTZ00424 helicase 45; Provisional
Probab=56.71 E-value=5.6 Score=45.25 Aligned_cols=27 Identities=41% Similarity=0.573 Sum_probs=21.4
Q ss_pred hhHHHhhCCcceEEEeeCcccCccccccc
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTFTME 458 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTyTM~ 458 (943)
..+..+++|.|+. ..++||||||.+..
T Consensus 57 ~ai~~i~~~~d~i--i~apTGsGKT~~~~ 83 (401)
T PTZ00424 57 RGIKPILDGYDTI--GQAQSGTGKTATFV 83 (401)
T ss_pred HHHHHHhCCCCEE--EECCCCChHHHHHH
Confidence 4677788999864 56899999998753
No 384
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=56.53 E-value=2.8e+02 Score=29.78 Aligned_cols=159 Identities=12% Similarity=0.106 Sum_probs=0.0
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhh---hhhccHHHHHHhhHhh
Q 002276 206 GVKGDYERLKMSYECQKKELTEAKRTLEELKRENQLKNKEYQETWKSLQE--LQNELMRKS---MHVGSLAFAIEGQVKE 280 (943)
Q Consensus 206 ~~~~e~~kL~~~~e~qk~eL~~~e~~i~eLe~en~~K~~E~~e~~~~l~~--~q~el~~~~---~~v~sL~~~ie~~~~e 280 (943)
++++.+.+.+..+..+......+++++.+++.....-......++..-.+ ....|.++. ..+..|+.+++....-
T Consensus 35 em~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~~~~~ 114 (219)
T TIGR02977 35 EMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALIEKQKAQELAEALERELAAVEET 114 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHH--------HH
Q 002276 281 KSRWFSSLRDLTRRLKIMKMEHINLFEEALAYKKC-----------AAEISEASSTIQSKINHQVQLYEH--------LK 341 (943)
Q Consensus 281 k~kl~~~L~~L~~~l~~~k~e~~~l~~e~~~~~~~-----------~~~i~~~~~~lq~~i~~~~~~~e~--------l~ 341 (943)
..++...|..|+.++..++.....|.......+.. ..+.......+..++...+..-+. +.
T Consensus 115 v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~ki~~~ea~aea~~~~~~~~l~ 194 (219)
T TIGR02977 115 LAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYERRVDELEAQAESYDLGRKPSLE 194 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHhhccCCCCHH
Q ss_pred HHHHhHHHHHHHHHhHHHhhcCCE
Q 002276 342 IKFIEGTKERKELYNKVLELKGNI 365 (943)
Q Consensus 342 ~kl~~e~~~RrkLhN~lqELKGNI 365 (943)
.+|..-. ..-.....|..||..+
T Consensus 195 ~~l~~l~-~~~~vd~eLa~LK~~~ 217 (219)
T TIGR02977 195 DEFAELE-ADDEIERELAALKAKM 217 (219)
T ss_pred HHHHHhc-CCChHHHHHHHHHhhh
No 385
>PF12252 SidE: Dot/Icm substrate protein; InterPro: IPR021014 This entry represents bacterial proteins that are typically between 397 and 1543 amino acids in length including SidE protein in the Dot/Icm pathway of Legionella pneumophila bacteria. There is little literature describing the family.
Probab=56.47 E-value=2.1e+02 Score=37.77 Aligned_cols=92 Identities=14% Similarity=0.268 Sum_probs=45.4
Q ss_pred ccCcchhHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhhccHHHHH
Q 002276 204 ERGVKGDYERLKMSYECQKK--------ELTEAKRTLEELKRENQLKNKEYQETW-KSLQELQNELMRKSMHVGSLAFAI 274 (943)
Q Consensus 204 ~~~~~~e~~kL~~~~e~qk~--------eL~~~e~~i~eLe~en~~K~~E~~e~~-~~l~~~q~el~~~~~~v~sL~~~i 274 (943)
..++.+.++.++++++.|+. .-+.++...+.|...+.++..+++... ..+...+.. ...+..|++++
T Consensus 1065 s~eLReQIq~~KQ~LesLQRAV~TPVvtd~eKvr~rYe~LI~~iTKrIt~LEk~k~~~l~~ikK~----ia~lnnlqqEl 1140 (1439)
T PF12252_consen 1065 SSELREQIQSVKQDLESLQRAVVTPVVTDAEKVRVRYETLITDITKRITDLEKAKLDNLDSIKKA----IANLNNLQQEL 1140 (1439)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHH----HHHHHHHHHHH
Confidence 45666667777777666663 222334445555555555555554431 111111111 12244455555
Q ss_pred HhhHhhhhh--------HHHHHHHHHHHHHHHH
Q 002276 275 EGQVKEKSR--------WFSSLRDLTRRLKIMK 299 (943)
Q Consensus 275 e~~~~ek~k--------l~~~L~~L~~~l~~~k 299 (943)
.-...|+.+ =++.|+.|+++|..+.
T Consensus 1141 klLRnEK~Rmh~~~dkVDFSDIEkLE~qLq~~~ 1173 (1439)
T PF12252_consen 1141 KLLRNEKIRMHSGTDKVDFSDIEKLEKQLQVIH 1173 (1439)
T ss_pred HHHHhHHHhhccCCCcccHHHHHHHHHHHHHhh
Confidence 444444443 2356667777666554
No 386
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=56.45 E-value=5.5 Score=40.72 Aligned_cols=26 Identities=35% Similarity=0.448 Sum_probs=16.2
Q ss_pred HHHhhCCcceEEEeeCcccCccccccc
Q 002276 432 ANSVLDGYNVCIFAYGQTGTGKTFTME 458 (943)
Q Consensus 432 V~svLdGyNvcIFAYGQTGSGKTyTM~ 458 (943)
|..++.--. ..+..|+.|||||+|+.
T Consensus 10 i~~~~~~~~-~~~i~GpPGTGKT~~l~ 35 (236)
T PF13086_consen 10 IQSALSSNG-ITLIQGPPGTGKTTTLA 35 (236)
T ss_dssp HHHHCTSSE--EEEE-STTSSHHHHHH
T ss_pred HHHHHcCCC-CEEEECCCCCChHHHHH
Confidence 444443333 45668999999999863
No 387
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=55.98 E-value=3.2e+02 Score=30.18 Aligned_cols=9 Identities=22% Similarity=0.435 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 002276 231 TLEELKREN 239 (943)
Q Consensus 231 ~i~eLe~en 239 (943)
++..++.++
T Consensus 13 rL~q~eee~ 21 (246)
T PF00769_consen 13 RLRQMEEEM 21 (246)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333333333
No 388
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=55.95 E-value=3.8e+02 Score=31.04 Aligned_cols=28 Identities=21% Similarity=0.102 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 212 ERLKMSYECQKKELTEAKRTLEELKREN 239 (943)
Q Consensus 212 ~kL~~~~e~qk~eL~~~e~~i~eLe~en 239 (943)
..|..+.+..+.|.++++...+.|+...
T Consensus 12 ~IL~~eLe~cq~ErDqyKlMAEqLqer~ 39 (319)
T PF09789_consen 12 LILSQELEKCQSERDQYKLMAEQLQERY 39 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666677777777666666666443
No 389
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=55.79 E-value=1.3e+02 Score=29.10 Aligned_cols=25 Identities=8% Similarity=0.252 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 213 RLKMSYECQKKELTEAKRTLEELKR 237 (943)
Q Consensus 213 kL~~~~e~qk~eL~~~e~~i~eLe~ 237 (943)
.|...++.++.++..+...+.++..
T Consensus 3 ql~~q~~ql~~~i~~l~~~i~~l~~ 27 (126)
T TIGR00293 3 QLAAELQILQQQVESLQAQIAALRA 27 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555566555555555533
No 390
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=55.67 E-value=3.8 Score=51.09 Aligned_cols=77 Identities=17% Similarity=0.254 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHhhcCCEEE
Q 002276 288 LRDLTRRLKIMKMEHINLFEEALAYKKCAAEISEASSTIQSKINHQVQLYEHLKIKFIEGTKERKELYNKVLELKGNIRV 367 (943)
Q Consensus 288 L~~L~~~l~~~k~e~~~l~~e~~~~~~~~~~i~~~~~~lq~~i~~~~~~~e~l~~kl~~e~~~RrkLhN~lqELKGNIRV 367 (943)
+..++.+++.++.....+.+....+...+...... ...+..+...+.++..++.++.....+|..++..|+..+..
T Consensus 327 ~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~----~~qle~~k~qi~eLe~~l~~~~~~~~~l~~e~~~L~ek~~~ 402 (713)
T PF05622_consen 327 LEDLKRQVKELEEDNAVLLETKAMLEEELKKARAL----KSQLEEYKKQIQELEQKLSEESRRADKLEFENKQLEEKLEA 402 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555444444444443333332222 22233333344445555555555555555555555554443
Q ss_pred E
Q 002276 368 F 368 (943)
Q Consensus 368 ~ 368 (943)
.
T Consensus 403 l 403 (713)
T PF05622_consen 403 L 403 (713)
T ss_dssp -
T ss_pred H
Confidence 3
No 391
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=55.65 E-value=6.7 Score=41.98 Aligned_cols=25 Identities=36% Similarity=0.531 Sum_probs=17.2
Q ss_pred hHHHhhCCcceEEEeeCcccCcccccc
Q 002276 431 FANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 431 LV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
.++.++ .+-.+++.|+.||||||.-
T Consensus 12 ~~~al~--~~~~v~~~G~AGTGKT~LA 36 (205)
T PF02562_consen 12 ALDALL--NNDLVIVNGPAGTGKTFLA 36 (205)
T ss_dssp HHHHHH--H-SEEEEE--TTSSTTHHH
T ss_pred HHHHHH--hCCeEEEECCCCCcHHHHH
Confidence 445555 5668999999999999875
No 392
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=55.26 E-value=6.1 Score=45.47 Aligned_cols=28 Identities=32% Similarity=0.390 Sum_probs=22.3
Q ss_pred hhhHHHhhCCcceEEEeeCcccCcccccc
Q 002276 429 APFANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 429 ~pLV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
+.++-.+..++ +.|+-.|-||||||.++
T Consensus 163 a~~L~~av~~r-~NILisGGTGSGKTTlL 190 (355)
T COG4962 163 AKFLRRAVGIR-CNILISGGTGSGKTTLL 190 (355)
T ss_pred HHHHHHHHhhc-eeEEEeCCCCCCHHHHH
Confidence 45666666666 77899999999999886
No 393
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=55.22 E-value=5.8e+02 Score=34.35 Aligned_cols=32 Identities=9% Similarity=0.236 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 283 RWFSSLRDLTRRLKIMKMEHINLFEEALAYKK 314 (943)
Q Consensus 283 kl~~~L~~L~~~l~~~k~e~~~l~~e~~~~~~ 314 (943)
++...|.+..+++..+..+............+
T Consensus 269 ~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q 300 (1109)
T PRK10929 269 ELSQALNQQAQRMDLIASQQRQAASQTLQVRQ 300 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555444444333333333333
No 394
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=55.21 E-value=5.4e+02 Score=32.65 Aligned_cols=34 Identities=6% Similarity=-0.282 Sum_probs=17.3
Q ss_pred eeeecCCCceeeecCCCCCCCCCCCCChhhhccc
Q 002276 79 LGFSLTSPDLVICGGSPEIPKSSYGESPEFSERI 112 (943)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (943)
.+|...--..+.|.+..+-....+.+.+++....
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (670)
T KOG0239|consen 28 FELARVYSPSVGQPSLFSDVQPFVQSALEGLNVK 61 (670)
T ss_pred cCccccccccccccccCCccccchhhhhhhhhcc
Confidence 3333333334555555555555566666666543
No 395
>KOG1854 consensus Mitochondrial inner membrane protein (mitofilin) [Cell wall/membrane/envelope biogenesis]
Probab=54.65 E-value=4.3e+02 Score=33.22 Aligned_cols=30 Identities=23% Similarity=0.305 Sum_probs=24.4
Q ss_pred hHHHHHHHHHhHHHhhcCCEEEE---EEeCCCC
Q 002276 346 EGTKERKELYNKVLELKGNIRVF---CRCRPLN 375 (943)
Q Consensus 346 ~e~~~RrkLhN~lqELKGNIRV~---~RVRPl~ 375 (943)
.+...++.|.-..+-|+|+++-- -|.+|+.
T Consensus 465 ~e~r~a~q~w~ac~nlk~s~~~g~~e~r~~pLg 497 (657)
T KOG1854|consen 465 LEARKAKQLWLACSNLKDSLNKGHYEMRRHPLG 497 (657)
T ss_pred HHhhhHHHHHHHHHHHHHhhhccccccccCchh
Confidence 34556688888899999999888 7899987
No 396
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=54.61 E-value=1.9e+02 Score=27.30 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 223 KELTEAKRTLEELKRENQLKNKEY 246 (943)
Q Consensus 223 ~eL~~~e~~i~eLe~en~~K~~E~ 246 (943)
.||..++..|.++......|..++
T Consensus 3 ~EL~~~~~a~~~~~~~~~~k~~~~ 26 (96)
T PF08647_consen 3 TELVSMEQAFKELSEQADKKVKEL 26 (96)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666665555554
No 397
>PRK13342 recombination factor protein RarA; Reviewed
Probab=54.55 E-value=6.5 Score=45.77 Aligned_cols=37 Identities=24% Similarity=0.368 Sum_probs=24.4
Q ss_pred cccccccchhhHHHhhCCcceEEEeeCcccCcccccc
Q 002276 421 QVDVFQDTAPFANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 421 QeeVFeev~pLV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
|+.+.....++...+-.+.-..++-||+.|+|||+..
T Consensus 17 q~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA 53 (413)
T PRK13342 17 QEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLA 53 (413)
T ss_pred cHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHH
Confidence 5555555333444444555556777999999999886
No 398
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=54.47 E-value=5.2 Score=45.90 Aligned_cols=29 Identities=24% Similarity=0.392 Sum_probs=20.2
Q ss_pred hhhHHHhhCCcceEEEeeCcccCccccccc
Q 002276 429 APFANSVLDGYNVCIFAYGQTGTGKTFTME 458 (943)
Q Consensus 429 ~pLV~svLdGyNvcIFAYGQTGSGKTyTM~ 458 (943)
..++..++. ....|+..|.||||||.+|-
T Consensus 152 ~~~l~~~v~-~~~nilI~G~tGSGKTTll~ 180 (344)
T PRK13851 152 EAFLHACVV-GRLTMLLCGPTGSGKTTMSK 180 (344)
T ss_pred HHHHHHHHH-cCCeEEEECCCCccHHHHHH
Confidence 345555554 23447788999999999983
No 399
>PF13514 AAA_27: AAA domain
Probab=54.42 E-value=6.7e+02 Score=33.46 Aligned_cols=33 Identities=27% Similarity=0.301 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhHHHhhcC
Q 002276 331 NHQVQLYEHLKIKFIEGTKERKELYNKVLELKG 363 (943)
Q Consensus 331 ~~~~~~~e~l~~kl~~e~~~RrkLhN~lqELKG 363 (943)
..+...++.+..++.+-...+..+-.+|..+.|
T Consensus 899 ~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~l~~ 931 (1111)
T PF13514_consen 899 EELEEELEELEEELEELQEERAELEQELEALEG 931 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 333334444444444444444445555555544
No 400
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=54.26 E-value=6.9 Score=45.86 Aligned_cols=26 Identities=31% Similarity=0.502 Sum_probs=20.4
Q ss_pred hhHHHhhCCcceEEEeeCcccCcccccc
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
..+..+++|.| +++.++||||||.+.
T Consensus 33 ~ai~~~l~g~d--vi~~a~TGsGKT~a~ 58 (460)
T PRK11776 33 QSLPAILAGKD--VIAQAKTGSGKTAAF 58 (460)
T ss_pred HHHHHHhcCCC--EEEECCCCCcHHHHH
Confidence 35667788988 667779999999764
No 401
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=54.24 E-value=3.6 Score=41.04 Aligned_cols=17 Identities=41% Similarity=0.772 Sum_probs=13.3
Q ss_pred eEEEee-CcccCcccccc
Q 002276 441 VCIFAY-GQTGTGKTFTM 457 (943)
Q Consensus 441 vcIFAY-GQTGSGKTyTM 457 (943)
..|+++ |.||+||||+-
T Consensus 53 pLVlSfHG~tGtGKn~v~ 70 (127)
T PF06309_consen 53 PLVLSFHGWTGTGKNFVS 70 (127)
T ss_pred CEEEEeecCCCCcHHHHH
Confidence 346655 99999999984
No 402
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=54.17 E-value=4.4 Score=38.20 Aligned_cols=15 Identities=40% Similarity=0.760 Sum_probs=13.6
Q ss_pred EEeeCcccCcccccc
Q 002276 443 IFAYGQTGTGKTFTM 457 (943)
Q Consensus 443 IFAYGQTGSGKTyTM 457 (943)
|+-||.+|.|||+.+
T Consensus 1 I~i~G~~G~GKS~l~ 15 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLA 15 (107)
T ss_pred CEEECCCCCCHHHHH
Confidence 578999999999987
No 403
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=54.10 E-value=5.1 Score=43.18 Aligned_cols=20 Identities=25% Similarity=0.283 Sum_probs=15.5
Q ss_pred cceEEEeeCcccCccccccc
Q 002276 439 YNVCIFAYGQTGTGKTFTME 458 (943)
Q Consensus 439 yNvcIFAYGQTGSGKTyTM~ 458 (943)
.+..++..|..|||||+||.
T Consensus 12 ~~~~~lV~a~AGSGKT~~l~ 31 (315)
T PF00580_consen 12 TEGPLLVNAGAGSGKTTTLL 31 (315)
T ss_dssp -SSEEEEEE-TTSSHHHHHH
T ss_pred CCCCEEEEeCCCCCchHHHH
Confidence 56777788889999999984
No 404
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=53.81 E-value=24 Score=44.64 Aligned_cols=16 Identities=31% Similarity=0.343 Sum_probs=13.7
Q ss_pred EEEeeCcccCcccccc
Q 002276 442 CIFAYGQTGTGKTFTM 457 (943)
Q Consensus 442 cIFAYGQTGSGKTyTM 457 (943)
.++-||++|+|||+..
T Consensus 349 ~lll~GppG~GKT~lA 364 (775)
T TIGR00763 349 ILCLVGPPGVGKTSLG 364 (775)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4677999999999875
No 405
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=53.58 E-value=5.7 Score=44.05 Aligned_cols=16 Identities=50% Similarity=0.632 Sum_probs=12.9
Q ss_pred EEeeCcccCccccccc
Q 002276 443 IFAYGQTGTGKTFTME 458 (943)
Q Consensus 443 IFAYGQTGSGKTyTM~ 458 (943)
|.-.|+||+|||+|+.
T Consensus 197 i~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 197 IALVGPTGVGKTTTLA 212 (282)
T ss_pred EEEECCCCCCHHHHHH
Confidence 4445999999999973
No 406
>PRK11281 hypothetical protein; Provisional
Probab=53.49 E-value=5.2e+02 Score=34.76 Aligned_cols=15 Identities=33% Similarity=0.705 Sum_probs=10.4
Q ss_pred hhhhcccccccceee
Q 002276 880 QHFRRGGVNVGMQQL 894 (943)
Q Consensus 880 ~~~~~~~~~~~~~~~ 894 (943)
..++++||.+..-..
T Consensus 1070 ~~f~e~GIeIpfPq~ 1084 (1113)
T PRK11281 1070 RLFRENDINIAFNQL 1084 (1113)
T ss_pred HHHHHCCCcCCCCCe
Confidence 457778888776653
No 407
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=53.46 E-value=5.7 Score=46.34 Aligned_cols=17 Identities=41% Similarity=0.556 Sum_probs=15.0
Q ss_pred eEEEeeCcccCcccccc
Q 002276 441 VCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 441 vcIFAYGQTGSGKTyTM 457 (943)
..|+.+|+||+|||.|+
T Consensus 175 ~vi~lvGptGvGKTTT~ 191 (388)
T PRK12723 175 RVFILVGPTGVGKTTTI 191 (388)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36778999999999997
No 408
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=53.43 E-value=7.9 Score=39.56 Aligned_cols=26 Identities=31% Similarity=0.484 Sum_probs=20.0
Q ss_pred hhHHHhhCCcceEEEeeCcccCcccccc
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
..++.++.|.| ++..++||+|||.+.
T Consensus 28 ~~~~~~~~~~~--~li~~~TG~GKT~~~ 53 (203)
T cd00268 28 RAIPPLLSGRD--VIGQAQTGSGKTAAF 53 (203)
T ss_pred HHHHHHhcCCc--EEEECCCCCcHHHHH
Confidence 35566677887 577889999999873
No 409
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=53.24 E-value=4.3 Score=44.56 Aligned_cols=38 Identities=24% Similarity=0.218 Sum_probs=23.4
Q ss_pred CcccccccchhhHHHhhC--CcceEEEeeCcccCcccccc
Q 002276 420 DQVDVFQDTAPFANSVLD--GYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 420 sQeeVFeev~pLV~svLd--GyNvcIFAYGQTGSGKTyTM 457 (943)
.|+++.+.+...+..... +.-..++-||+.|+|||+..
T Consensus 8 G~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 8 GQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLA 47 (305)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 355555555555544332 21223667999999999886
No 410
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=53.08 E-value=3e+02 Score=35.37 Aligned_cols=13 Identities=38% Similarity=0.810 Sum_probs=6.2
Q ss_pred hhCCcceEEEeeC
Q 002276 435 VLDGYNVCIFAYG 447 (943)
Q Consensus 435 vLdGyNvcIFAYG 447 (943)
++.|+.+..+-.|
T Consensus 718 ~~~g~~~v~IIHG 730 (771)
T TIGR01069 718 LLAGYEVVLIIHG 730 (771)
T ss_pred HHCCCCEEEEEcC
Confidence 3345555544444
No 411
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=53.01 E-value=4.1e+02 Score=33.98 Aligned_cols=18 Identities=28% Similarity=0.239 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002276 240 QLKNKEYQETWKSLQELQ 257 (943)
Q Consensus 240 ~~K~~E~~e~~~~l~~~q 257 (943)
..|..+|.++++.++..+
T Consensus 519 ~~k~~~~~q~~~~~~~~~ 536 (809)
T KOG0247|consen 519 SLKEKECRQKLMNAQLES 536 (809)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 678888888777666533
No 412
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=52.81 E-value=5.8e+02 Score=32.27 Aligned_cols=15 Identities=13% Similarity=-0.115 Sum_probs=6.7
Q ss_pred EEEeeCcccCccccc
Q 002276 442 CIFAYGQTGTGKTFT 456 (943)
Q Consensus 442 cIFAYGQTGSGKTyT 456 (943)
..|+-...|.|||++
T Consensus 549 i~vts~~~G~GKTt~ 563 (754)
T TIGR01005 549 VETQRPRPVLGKSDI 563 (754)
T ss_pred EEeecCCCCCChhHH
Confidence 333334444555444
No 413
>cd09234 V_HD-PTP_like Protein-interacting V-domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the V-shaped (V) domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23) and related domains. It belongs to the V_Alix_like superfamily which includes the V domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X/ also known as apoptosis-linked gene-2 interacting protein 1, AIP1), and related domains. HD_PTP interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in cell migration and endosomal trafficking. The related Alix V-domain (belonging to a different family in this superfamily) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. In addi
Probab=52.22 E-value=3.5e+02 Score=31.03 Aligned_cols=36 Identities=28% Similarity=0.238 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhHHHhhcCCE
Q 002276 330 INHQVQLYEHLKIKFIEGTKERKELYNKVLELKGNI 365 (943)
Q Consensus 330 i~~~~~~~e~l~~kl~~e~~~RrkLhN~lqELKGNI 365 (943)
+......|.++...+.+...-=..|...+..+..+|
T Consensus 295 L~~ay~~y~el~~~l~eG~~FY~dL~~~v~~~~~~~ 330 (337)
T cd09234 295 LIASYEAYEDLLKKSQKGIDFYKKLEGNVSKLLQRI 330 (337)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344555555555444433333333333443333
No 414
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=52.11 E-value=4.3e+02 Score=30.52 Aligned_cols=79 Identities=16% Similarity=0.211 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccHHHHHHhhHhhhhhHHHHHHHHH
Q 002276 213 RLKMSYECQKKELTEAKRTLEELKRENQLKNKEYQETWKSLQELQNELMRKSMHVGSLAFAIEGQVKEKSRWFSSLRDLT 292 (943)
Q Consensus 213 kL~~~~e~qk~eL~~~e~~i~eLe~en~~K~~E~~e~~~~l~~~q~el~~~~~~v~sL~~~ie~~~~ek~kl~~~L~~L~ 292 (943)
.+++....|.++++-++..-.-|+..+.+|..|.+.....+.++.+...-- ....+++..+.+...++...-+.|.
T Consensus 4 d~QN~N~EL~kQiEIcqEENkiLdK~hRQKV~EVEKLsqTi~ELEEaiLag----GaaaNavrdYqrq~~elneEkrtLe 79 (351)
T PF07058_consen 4 DVQNQNQELMKQIEICQEENKILDKMHRQKVLEVEKLSQTIRELEEAILAG----GAAANAVRDYQRQVQELNEEKRTLE 79 (351)
T ss_pred hhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355566667777777777767777777888888887777776666555432 2233444444443344444444444
Q ss_pred HHH
Q 002276 293 RRL 295 (943)
Q Consensus 293 ~~l 295 (943)
..|
T Consensus 80 REL 82 (351)
T PF07058_consen 80 REL 82 (351)
T ss_pred HHH
Confidence 444
No 415
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=52.06 E-value=6.1e+02 Score=32.27 Aligned_cols=10 Identities=20% Similarity=0.072 Sum_probs=5.8
Q ss_pred ccccCCCCCC
Q 002276 791 AVRRIPLTSA 800 (943)
Q Consensus 791 ~~~~~~~~~~ 800 (943)
.++++.-++.
T Consensus 638 ~Gykid~~~~ 647 (716)
T KOG4593|consen 638 LGYKIDFTLE 647 (716)
T ss_pred hhhhhhcccc
Confidence 4666666553
No 416
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=51.86 E-value=3.9e+02 Score=30.03 Aligned_cols=12 Identities=25% Similarity=0.559 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q 002276 229 KRTLEELKRENQ 240 (943)
Q Consensus 229 e~~i~eLe~en~ 240 (943)
+.++..+++.|.
T Consensus 51 esqL~q~etrnr 62 (333)
T KOG1853|consen 51 ESQLDQLETRNR 62 (333)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 417
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=51.74 E-value=3e+02 Score=28.62 Aligned_cols=18 Identities=17% Similarity=0.158 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 002276 283 RWFSSLRDLTRRLKIMKM 300 (943)
Q Consensus 283 kl~~~L~~L~~~l~~~k~ 300 (943)
.+...|+.....|+.+..
T Consensus 88 ~vRkkID~vNreLkpl~~ 105 (159)
T PF04949_consen 88 MVRKKIDSVNRELKPLGQ 105 (159)
T ss_pred HHHHHHHHHHHHhhHHHH
Confidence 455666666666665543
No 418
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=51.71 E-value=87 Score=37.14 Aligned_cols=42 Identities=24% Similarity=0.192 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhHHHhhcCCEEEEE--EeCC
Q 002276 332 HQVQLYEHLKIKFIEGTKERKELYNKVLELKGNIRVFC--RCRP 373 (943)
Q Consensus 332 ~~~~~~e~l~~kl~~e~~~RrkLhN~lqELKGNIRV~~--RVRP 373 (943)
.+...+..+.+++.+-......|.+++....++.+|.| ++.|
T Consensus 379 ~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~I~v~~~vyp 422 (451)
T PF03961_consen 379 KLKEKKKELKEELKELKEELKELKEELERSYKEARIKVRKRVYP 422 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccceEEEECCEEEC
Confidence 33344445555555556666777788887743334444 4445
No 419
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=51.68 E-value=3.6e+02 Score=29.49 Aligned_cols=10 Identities=30% Similarity=0.418 Sum_probs=4.8
Q ss_pred hhcCCEEEEE
Q 002276 360 ELKGNIRVFC 369 (943)
Q Consensus 360 ELKGNIRV~~ 369 (943)
+.-+.|-||=
T Consensus 163 ~yg~~i~~~~ 172 (251)
T PF11932_consen 163 EYGRTIEVYQ 172 (251)
T ss_pred HhCCceeEEE
Confidence 4445555543
No 420
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=51.55 E-value=1.9e+02 Score=36.98 Aligned_cols=12 Identities=42% Similarity=0.515 Sum_probs=6.3
Q ss_pred CCEEEEEEeCCC
Q 002276 363 GNIRVFCRCRPL 374 (943)
Q Consensus 363 GNIRV~~RVRPl 374 (943)
|=+.|.=|-||+
T Consensus 225 Gl~~vL~~e~~l 236 (1102)
T KOG1924|consen 225 GLVLVLRRERSL 236 (1102)
T ss_pred ceeeeecCCccH
Confidence 445555555553
No 421
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=51.49 E-value=3.4e+02 Score=34.02 Aligned_cols=26 Identities=8% Similarity=0.116 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 218 YECQKKELTEAKRTLEELKRENQLKN 243 (943)
Q Consensus 218 ~e~qk~eL~~~e~~i~eLe~en~~K~ 243 (943)
+.-|-++...-..+|.+||.=+..|.
T Consensus 127 vsvLteqVeaQgEKIrDLE~cie~kr 152 (861)
T KOG1899|consen 127 VSVLTEQVEAQGEKIRDLETCIEEKR 152 (861)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 33344444444566777766554443
No 422
>COG3352 FlaC Putative archaeal flagellar protein C [Cell motility and secretion]
Probab=51.36 E-value=2.2e+02 Score=29.66 Aligned_cols=53 Identities=17% Similarity=0.140 Sum_probs=39.0
Q ss_pred hccHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 267 VGSLAFAIEGQVKEKSRWFSSLRDLTRRLKIMKMEHINLFEEALAYKKCAAEI 319 (943)
Q Consensus 267 v~sL~~~ie~~~~ek~kl~~~L~~L~~~l~~~k~e~~~l~~e~~~~~~~~~~i 319 (943)
+.++.-.+.+..+-......+|..|+..++.+.+.+...+.++.-+.......
T Consensus 60 lg~~~~~~~g~kk~~~~~~eelerLe~~iKdl~~lye~Vs~d~Npf~s~~~qe 112 (157)
T COG3352 60 LGKVKIEIEGQKKQLQDIKEELERLEENIKDLVSLYELVSRDFNPFMSKTPQE 112 (157)
T ss_pred cccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhhHHH
Confidence 44455556666666677888899999999999988888888887766655433
No 423
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=51.34 E-value=3.5e+02 Score=29.32 Aligned_cols=31 Identities=19% Similarity=0.250 Sum_probs=15.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 209 GDYERLKMSYECQKKELTEAKRTLEELKREN 239 (943)
Q Consensus 209 ~e~~kL~~~~e~qk~eL~~~e~~i~eLe~en 239 (943)
+++.-|..+.+.-+..+.....++.+++..+
T Consensus 11 rri~~leeele~aqErl~~a~~KL~Eaeq~~ 41 (205)
T KOG1003|consen 11 RRIQLLEEELDRAQERLATALQKLEEAEQAA 41 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3444444444444444455555555555444
No 424
>PRK11546 zraP zinc resistance protein; Provisional
Probab=51.16 E-value=1.8e+02 Score=29.97 Aligned_cols=67 Identities=13% Similarity=0.083 Sum_probs=34.1
Q ss_pred cCChHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 654 QLDTSELLRYKQMVEKTKQELKSRDVQSKRMEDTIHGLDLKLKDKDLKIKSLQDKVKELETQLLVER 720 (943)
Q Consensus 654 ~~~~~el~rlk~~ie~LK~eL~~~~~q~~~lE~~i~~l~~kl~e~d~~i~~LqekikeLE~qL~~er 720 (943)
+++......++...++...+...+..++-....+++.+-..-+-....|..+..+|.+|..+|..++
T Consensus 43 ~LT~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r 109 (143)
T PRK11546 43 PLTTEQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELR 109 (143)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444443334444443333333333333334444444433333345567888888888887776554
No 425
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=51.13 E-value=1.4e+02 Score=29.17 Aligned_cols=35 Identities=26% Similarity=0.375 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 209 GDYERLKMSYECQKKELTEAKRTLEELKRENQLKN 243 (943)
Q Consensus 209 ~e~~kL~~~~e~qk~eL~~~e~~i~eLe~en~~K~ 243 (943)
.||.||+....-|++-+-+.+.+..+|..+.+.|.
T Consensus 5 ~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke 39 (102)
T PF10205_consen 5 QEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKE 39 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444333
No 426
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=51.09 E-value=2.4e+02 Score=32.26 Aligned_cols=20 Identities=20% Similarity=0.170 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002276 220 CQKKELTEAKRTLEELKREN 239 (943)
Q Consensus 220 ~qk~eL~~~e~~i~eLe~en 239 (943)
.++.+|.+++.++....-.|
T Consensus 81 ~lk~~l~evEekyrkAMv~n 100 (302)
T PF09738_consen 81 DLKDSLAEVEEKYRKAMVSN 100 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33666666655554444433
No 427
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=51.01 E-value=7 Score=40.32 Aligned_cols=17 Identities=29% Similarity=0.348 Sum_probs=14.7
Q ss_pred eEEEeeCcccCcccccc
Q 002276 441 VCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 441 vcIFAYGQTGSGKTyTM 457 (943)
+.++-+|+||+|||++.
T Consensus 4 ~~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELA 20 (171)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 46788999999999975
No 428
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=50.91 E-value=6.6e+02 Score=32.37 Aligned_cols=36 Identities=14% Similarity=0.158 Sum_probs=24.0
Q ss_pred ccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 204 ERGVKGDYERLKMSYECQKKELTEAKRTLEELKREN 239 (943)
Q Consensus 204 ~~~~~~e~~kL~~~~e~qk~eL~~~e~~i~eLe~en 239 (943)
-++++++...-...-++|+.++...+..+..|.+-+
T Consensus 845 Rnei~R~l~~~~~~~QQ~R~Q~d~aKe~~~~LnkLi 880 (1480)
T COG3096 845 RNELERALSNHENDNQQQRIQFDQAKEGVTALNRLI 880 (1480)
T ss_pred HHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHhh
Confidence 455666666666666777778888877776665533
No 429
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=50.84 E-value=3.1e+02 Score=28.55 Aligned_cols=44 Identities=18% Similarity=0.307 Sum_probs=30.9
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q 002276 206 GVKGDYERLKMSYECQKKELTEAKRTLEELKRENQ-LKNKEYQET 249 (943)
Q Consensus 206 ~~~~e~~kL~~~~e~qk~eL~~~e~~i~eLe~en~-~K~~E~~e~ 249 (943)
++....+.+.+.+..+..++..+++.|..+-.... +|-+-+...
T Consensus 7 el~~~~~~~~~~~~~~~~~l~~l~~ai~~~~~~~~~LkGka~dsi 51 (204)
T PF04740_consen 7 ELHSQAESTNSSLKELKEQLESLQKAINQFISSESSLKGKAYDSI 51 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhHHHHHH
Confidence 34556677777888888888888888887766665 665555544
No 430
>PF13166 AAA_13: AAA domain
Probab=50.84 E-value=5.9e+02 Score=31.75 Aligned_cols=15 Identities=27% Similarity=0.428 Sum_probs=6.1
Q ss_pred HHHHHHHhHHHhhcC
Q 002276 349 KERKELYNKVLELKG 363 (943)
Q Consensus 349 ~~RrkLhN~lqELKG 363 (943)
.....+-+++.+|+.
T Consensus 438 ~~~~~~~~~i~~l~~ 452 (712)
T PF13166_consen 438 EEIKKIEKEIKELEA 452 (712)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444444443
No 431
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=50.65 E-value=5.9 Score=36.92 Aligned_cols=15 Identities=40% Similarity=0.397 Sum_probs=13.2
Q ss_pred EEeeCcccCcccccc
Q 002276 443 IFAYGQTGTGKTFTM 457 (943)
Q Consensus 443 IFAYGQTGSGKTyTM 457 (943)
|+-.|.+|||||+..
T Consensus 1 I~i~G~~GsGKtTia 15 (129)
T PF13238_consen 1 IGISGIPGSGKTTIA 15 (129)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred CEEECCCCCCHHHHH
Confidence 677899999999875
No 432
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=50.56 E-value=5.6e+02 Score=32.97 Aligned_cols=62 Identities=19% Similarity=0.176 Sum_probs=39.8
Q ss_pred CccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 002276 203 GERGVKGDYERLKMSYECQKKELTEAKRTLEELKRENQLKNKEYQETWKSLQELQNELMRKSMHV 267 (943)
Q Consensus 203 ~~~~~~~e~~kL~~~~e~qk~eL~~~e~~i~eLe~en~~K~~E~~e~~~~l~~~q~el~~~~~~v 267 (943)
.|...++..+++....+ ++-+++++.|++|..++..=.+..+.++..|.+++..+..-..++
T Consensus 182 ~e~~p~~r~q~~~r~~~---kqa~~~~~~we~l~~~~~~w~k~v~~~le~l~elq~a~~el~~~l 243 (966)
T KOG4286|consen 182 RELPPEERAQNVTRLLR---KQAEEVNTEWEKLNLHSADWQRKIDETLERLQELQEATDELDLKL 243 (966)
T ss_pred ccCCHHHHHHHHHHHHH---HHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555555565555554 444777889999988886555566677777777666655443333
No 433
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=50.44 E-value=23 Score=41.18 Aligned_cols=47 Identities=23% Similarity=0.506 Sum_probs=28.8
Q ss_pred eeee-cc-eeeCCCCCcccccccchhhHHHhhCC---cceEEEeeCcccCcccccc
Q 002276 407 KTFK-FD-AVFGPQADQVDVFQDTAPFANSVLDG---YNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 407 ktF~-FD-~VF~~~asQeeVFeev~pLV~svLdG---yNvcIFAYGQTGSGKTyTM 457 (943)
+.|. || .||+ +++..+.+...+.+...| -+--+.-.|++|||||...
T Consensus 44 ~~y~~F~~~~~G----~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla 95 (361)
T smart00763 44 KRYRFFDHDFFG----MEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLV 95 (361)
T ss_pred eeccccchhccC----cHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHH
Confidence 3444 44 6777 444444444455555554 3456778899999998653
No 434
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=50.40 E-value=20 Score=45.59 Aligned_cols=25 Identities=40% Similarity=0.449 Sum_probs=21.7
Q ss_pred hHHHhhCCcceEEEeeCcccCcccccc
Q 002276 431 FANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 431 LV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
.+..+.+|+|+.|.| +||||||-+-
T Consensus 30 a~~~i~~G~nvLiiA--PTGsGKTeAA 54 (814)
T COG1201 30 AIPEIHSGENVLIIA--PTGSGKTEAA 54 (814)
T ss_pred HHHHHhCCCceEEEc--CCCCChHHHH
Confidence 566778999999988 9999999884
No 435
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=49.54 E-value=9 Score=44.45 Aligned_cols=26 Identities=35% Similarity=0.507 Sum_probs=21.2
Q ss_pred hhHHHhhCCcceEEEeeCcccCcccccc
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
..+..+++|.| +++.++||||||.+.
T Consensus 30 ~ai~~~~~g~d--~l~~apTGsGKT~~~ 55 (434)
T PRK11192 30 EAIPPALDGRD--VLGSAPTGTGKTAAF 55 (434)
T ss_pred HHHHHHhCCCC--EEEECCCCChHHHHH
Confidence 35677888987 788899999999874
No 436
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=49.52 E-value=4.2e+02 Score=31.83 Aligned_cols=126 Identities=18% Similarity=0.215 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccHHHHHHhhHhhhhhHHHHHHH
Q 002276 211 YERLKMSYECQKKELTEAKRTLEELKRENQLKNKEYQETWKSLQELQNELMRKSMHVGSLAFAIEGQVKEKSRWFSSLRD 290 (943)
Q Consensus 211 ~~kL~~~~e~qk~eL~~~e~~i~eLe~en~~K~~E~~e~~~~l~~~q~el~~~~~~v~sL~~~ie~~~~ek~kl~~~L~~ 290 (943)
..++.++++....+.+.++.=++.|+.+++.- +..++..++.+...+-..|..+++...++...+...|.+
T Consensus 145 ~~~ld~e~~~~~~e~~~Y~~~l~~Le~~~~~~---------~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e 215 (447)
T KOG2751|consen 145 LNKLDKEVEDAEDEVDTYKACLQRLEQQNQDV---------SEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKE 215 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCccc---------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 291 LTRRLKIMKMEHINLFEEALAYKKCAAEISEASSTIQSKINHQVQLYEHLKIKFI 345 (943)
Q Consensus 291 L~~~l~~~k~e~~~l~~e~~~~~~~~~~i~~~~~~lq~~i~~~~~~~e~l~~kl~ 345 (943)
++.+-..+..+-.....+.......+-+.+.....|..++.=....+.-+.....
T Consensus 216 ~~~~~~~~~e~~~~~~~ey~~~~~q~~~~~del~Sle~q~~~s~~qldkL~ktNv 270 (447)
T KOG2751|consen 216 LEFKAERLNEEEDQYWREYNNFQRQLIEHQDELDSLEAQIEYSQAQLDKLRKTNV 270 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHhhhh
No 437
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=49.45 E-value=1.7e+02 Score=26.46 Aligned_cols=40 Identities=15% Similarity=0.155 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 213 RLKMSYECQKKELTEAKRTLEELKRENQLKNKEYQETWKS 252 (943)
Q Consensus 213 kL~~~~e~qk~eL~~~e~~i~eLe~en~~K~~E~~e~~~~ 252 (943)
+|..++..|+..|+.+.+++...+.+|..-..|-.....+
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~ 41 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQ 41 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777888888887777777666665444444433333
No 438
>cd08915 V_Alix_like Protein-interacting V-domain of mammalian Alix and related domains. This superfamily contains the V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Bro1, and Rim20 all interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. The Alix V-domain contains
Probab=49.37 E-value=3.5e+02 Score=30.80 Aligned_cols=34 Identities=32% Similarity=0.350 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhHHHhhcCCEEEE
Q 002276 335 QLYEHLKIKFIEGTKERKELYNKVLELKGNIRVF 368 (943)
Q Consensus 335 ~~~e~l~~kl~~e~~~RrkLhN~lqELKGNIRV~ 368 (943)
..|.++...+.+...-=..|.+.+..++.+|.-|
T Consensus 305 ~~y~el~~~l~eG~~FY~dL~~~~~~l~~~~~~f 338 (342)
T cd08915 305 KKYLELKENLNEGSKFYNDLIEKVNRLLEECEDF 338 (342)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455444444443333333344444444333
No 439
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=49.27 E-value=5.8e+02 Score=31.27 Aligned_cols=26 Identities=8% Similarity=0.054 Sum_probs=13.8
Q ss_pred HHHHHHHHhHHHhhcC-CEEEEEEeCC
Q 002276 348 TKERKELYNKVLELKG-NIRVFCRCRP 373 (943)
Q Consensus 348 ~~~RrkLhN~lqELKG-NIRV~~RVRP 373 (943)
....+.+...+.+|.- +.+..|.+.|
T Consensus 378 ~~l~~~v~~~l~~L~m~~~~f~v~~~~ 404 (563)
T TIGR00634 378 ERLAKRVEQELKALAMEKAEFTVEIKT 404 (563)
T ss_pred HHHHHHHHHHHHhCCCCCcEEEEEEee
Confidence 3444555566666543 4455555544
No 440
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=49.23 E-value=60 Score=37.78 Aligned_cols=11 Identities=9% Similarity=0.356 Sum_probs=5.1
Q ss_pred hHHHHHHHHHh
Q 002276 470 TLEELFRIIKE 480 (943)
Q Consensus 470 al~~LF~~i~~ 480 (943)
.+..+|..+.+
T Consensus 298 ~~~~i~~~Lr~ 308 (370)
T PF02994_consen 298 KFNPIKKKLRE 308 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33445554444
No 441
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=49.18 E-value=6.1 Score=38.16 Aligned_cols=15 Identities=40% Similarity=0.589 Sum_probs=13.5
Q ss_pred EEeeCcccCcccccc
Q 002276 443 IFAYGQTGTGKTFTM 457 (943)
Q Consensus 443 IFAYGQTGSGKTyTM 457 (943)
|+-+|++|+|||+.+
T Consensus 2 vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999886
No 442
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=48.99 E-value=8.4 Score=40.10 Aligned_cols=19 Identities=32% Similarity=0.389 Sum_probs=14.6
Q ss_pred cceEEEeeCcccCcccccc
Q 002276 439 YNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 439 yNvcIFAYGQTGSGKTyTM 457 (943)
.-..||..||.|||||+.+
T Consensus 14 ~P~~~i~aG~~GsGKSt~~ 32 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLA 32 (199)
T ss_dssp S-EEEEEES-TTSTTHHHH
T ss_pred CCEEEEEeCCCCCCHHHHH
Confidence 3467899999999999886
No 443
>PF15294 Leu_zip: Leucine zipper
Probab=48.86 E-value=4.5e+02 Score=29.87 Aligned_cols=33 Identities=18% Similarity=0.175 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 211 YERLKMSYECQKKELTEAKRTLEELKRENQLKN 243 (943)
Q Consensus 211 ~~kL~~~~e~qk~eL~~~e~~i~eLe~en~~K~ 243 (943)
..-|..+|..++.|...++.++..++..+-.-.
T Consensus 127 ~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l 159 (278)
T PF15294_consen 127 SELLNKEIDRLQEENEKLKERLKSLEKQATSAL 159 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455888888888888888888888887774333
No 444
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=48.80 E-value=4.5e+02 Score=33.03 Aligned_cols=12 Identities=33% Similarity=0.570 Sum_probs=7.3
Q ss_pred HHHHHHHHhhhh
Q 002276 862 SALRRSLQKKMQ 873 (943)
Q Consensus 862 ~~~~~~~~~~~~ 873 (943)
+.|||-|--+..
T Consensus 767 TLLRRHLtthFn 778 (861)
T KOG1899|consen 767 TLLRRHLTTHFN 778 (861)
T ss_pred HHHHHHHHHHHH
Confidence 567777665543
No 445
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=48.68 E-value=6.7 Score=44.97 Aligned_cols=36 Identities=31% Similarity=0.557 Sum_probs=25.9
Q ss_pred CCcccccccchhhHHHhhCCcceEEEeeCcccCcccccc
Q 002276 419 ADQVDVFQDTAPFANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 419 asQeeVFeev~pLV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
..|..+|+.+...+.. .+| ..+|.-|.-|+||||.+
T Consensus 4 ~eQ~~~~~~v~~~~~~-~~~--~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 4 EEQRRVFDTVIEAIEN-EEG--LNFFVTGPAGTGKSFLI 39 (364)
T ss_pred HHHHHHHHHHHHHHHc-cCC--cEEEEEcCCCCChhHHH
Confidence 4577888877543333 344 46788999999999986
No 446
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=48.68 E-value=2.8e+02 Score=27.46 Aligned_cols=31 Identities=19% Similarity=0.356 Sum_probs=20.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 207 VKGDYERLKMSYECQKKELTEAKRTLEELKR 237 (943)
Q Consensus 207 ~~~e~~kL~~~~e~qk~eL~~~e~~i~eLe~ 237 (943)
.+.+.+.|...++.++.++..+...+..++.
T Consensus 4 ~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~ 34 (140)
T PRK03947 4 SEQELEELAAQLQALQAQIEALQQQLEELQA 34 (140)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666677777777777776666666644
No 447
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=48.66 E-value=11 Score=46.46 Aligned_cols=126 Identities=16% Similarity=0.182 Sum_probs=63.5
Q ss_pred eeecceeeCCCCCcccccccchhhHHHhhCCcceEEEeeCcccCccccccccCCCCCCccHHhHHHHHHHHHhhccccee
Q 002276 408 TFKFDAVFGPQADQVDVFQDTAPFANSVLDGYNVCIFAYGQTGTGKTFTMEGTKEARGVNFRTLEELFRIIKEREKLYRY 487 (943)
Q Consensus 408 tF~FD~VF~~~asQeeVFeev~pLV~svLdGyNvcIFAYGQTGSGKTyTM~G~~e~~GIIPRal~~LF~~i~~~~~~~~y 487 (943)
.|+|+.+.+.+ ..+..+...+..+. ..+..|+-+|.+||||++.- ++ |..... +.. .-
T Consensus 321 ~~~~~~l~g~s----~~~~~~~~~~~~~a-~~~~pvli~Ge~GtGK~~~A-----------~~---ih~~s~-r~~--~p 378 (638)
T PRK11388 321 SHTFDHMPQDS----PQMRRLIHFGRQAA-KSSFPVLLCGEEGVGKALLA-----------QA---IHNESE-RAA--GP 378 (638)
T ss_pred cccccceEECC----HHHHHHHHHHHHHh-CcCCCEEEECCCCcCHHHHH-----------HH---HHHhCC-ccC--CC
Confidence 45677766532 23444444444443 45778999999999998764 22 221111 111 11
Q ss_pred EEEEEEEEEecchh-hhccccCCCCCCCcccceEEeCCCCceEcCCceEEEecChHHHHHHHHcccccc
Q 002276 488 DISVSVLEVYNEQI-RDLLAVGSQPGAVSKRLEVRQAGEGMHHVPGLVEAHVNNISEVWEVLQTGSNVR 555 (943)
Q Consensus 488 ~V~VSflEIYNE~I-~DLL~~~~~~~~~~k~LeIred~~g~v~V~gLtev~V~S~eE~~~lL~~G~k~R 555 (943)
-|.|.+-.+.-+.+ -+|+............-.+.....|.+++.++-..+..--..++++|+.+.-.|
T Consensus 379 fv~vnc~~~~~~~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~ 447 (638)
T PRK11388 379 YIAVNCQLYPDEALAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITR 447 (638)
T ss_pred eEEEECCCCChHHHHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEe
Confidence 12233322222222 235532110000111112334556778888887777766677788887665433
No 448
>PRK13764 ATPase; Provisional
Probab=48.38 E-value=8.9 Score=47.23 Aligned_cols=19 Identities=26% Similarity=0.359 Sum_probs=16.2
Q ss_pred ceEEEeeCcccCccccccc
Q 002276 440 NVCIFAYGQTGTGKTFTME 458 (943)
Q Consensus 440 NvcIFAYGQTGSGKTyTM~ 458 (943)
...|+..|.||||||+++.
T Consensus 257 ~~~ILIsG~TGSGKTTll~ 275 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQ 275 (602)
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4458999999999999983
No 449
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=48.28 E-value=2.4e+02 Score=34.09 Aligned_cols=34 Identities=21% Similarity=0.122 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhHHHhhcC
Q 002276 330 INHQVQLYEHLKIKFIEGTKERKELYNKVLELKG 363 (943)
Q Consensus 330 i~~~~~~~e~l~~kl~~e~~~RrkLhN~lqELKG 363 (943)
+.++.....++..++.+.+.+..+|.++|..+.+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~ 173 (525)
T TIGR02231 140 IERLLTEDREAERRIRELEKQLSELQNELNALLT 173 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3333333344444555555555556666666654
No 450
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=48.16 E-value=6 Score=49.49 Aligned_cols=22 Identities=18% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHHHHHhHHHHHHHHHhHHHh
Q 002276 339 HLKIKFIEGTKERKELYNKVLE 360 (943)
Q Consensus 339 ~l~~kl~~e~~~RrkLhN~lqE 360 (943)
.+..+|..-+..+..|..++..
T Consensus 302 ~~~~el~~lq~e~~~Le~el~s 323 (722)
T PF05557_consen 302 ELEEELAELQLENEKLEDELNS 323 (722)
T ss_dssp ----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555444443
No 451
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=47.81 E-value=5.7e+02 Score=30.69 Aligned_cols=25 Identities=12% Similarity=0.119 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 215 KMSYECQKKELTEAKRTLEELKREN 239 (943)
Q Consensus 215 ~~~~e~qk~eL~~~e~~i~eLe~en 239 (943)
.+...++..++.+.+++..++.+++
T Consensus 12 dqr~~~~~~~laq~~k~~s~~~aq~ 36 (459)
T KOG0288|consen 12 DQRLIDLNTELAQCEKAQSRLSAQL 36 (459)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555554444
No 452
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=47.73 E-value=5.9e+02 Score=30.87 Aligned_cols=21 Identities=29% Similarity=0.417 Sum_probs=13.2
Q ss_pred CCceeeecCCCCCCCCCCCCChh
Q 002276 85 SPDLVICGGSPEIPKSSYGESPE 107 (943)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~ 107 (943)
+|-+|--+||||..++ |-+|.
T Consensus 64 ~~hfvsr~~s~D~~s~--~w~pt 84 (554)
T KOG4677|consen 64 ERHFVSRSGSPDVGSI--SWSPT 84 (554)
T ss_pred chhhcccccCCCcCcc--ccCCc
Confidence 5667777888884443 44554
No 453
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=47.56 E-value=9.4 Score=44.26 Aligned_cols=26 Identities=38% Similarity=0.420 Sum_probs=19.9
Q ss_pred hhHHHhhCCcceEEEeeCcccCcccccc
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
..+..++.|.|+ ++-++||||||.+.
T Consensus 37 ~aip~il~g~dv--i~~ApTGsGKTla~ 62 (423)
T PRK04837 37 LALPLTLAGRDV--AGQAQTGTGKTMAF 62 (423)
T ss_pred HHHHHHhCCCcE--EEECCCCchHHHHH
Confidence 355678899885 55669999999864
No 454
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=47.41 E-value=9.9 Score=47.25 Aligned_cols=30 Identities=23% Similarity=0.183 Sum_probs=20.0
Q ss_pred hhhHHHhhC-----CcceEEEeeCcccCcccccccc
Q 002276 429 APFANSVLD-----GYNVCIFAYGQTGTGKTFTMEG 459 (943)
Q Consensus 429 ~pLV~svLd-----GyNvcIFAYGQTGSGKTyTM~G 459 (943)
..++.++.. |.+..++.. .||||||+||..
T Consensus 248 ~~~~~~~~~~~~~~~~~~gli~~-~TGsGKT~t~~~ 282 (667)
T TIGR00348 248 KKIVESITRKTWGKDERGGLIWH-TQGSGKTLTMLF 282 (667)
T ss_pred HHHHHHHHhcccCCCCceeEEEE-ecCCCccHHHHH
Confidence 345666655 344455443 899999999954
No 455
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=47.35 E-value=7.2 Score=37.43 Aligned_cols=15 Identities=33% Similarity=0.556 Sum_probs=13.4
Q ss_pred EEeeCcccCcccccc
Q 002276 443 IFAYGQTGTGKTFTM 457 (943)
Q Consensus 443 IFAYGQTGSGKTyTM 457 (943)
|+..|..|||||+..
T Consensus 2 ii~~G~pgsGKSt~a 16 (143)
T PF13671_consen 2 IILCGPPGSGKSTLA 16 (143)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999874
No 456
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=47.21 E-value=2.2e+02 Score=33.08 Aligned_cols=31 Identities=23% Similarity=0.421 Sum_probs=19.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 207 VKGDYERLKMSYECQKKELTEAKRTLEELKR 237 (943)
Q Consensus 207 ~~~e~~kL~~~~e~qk~eL~~~e~~i~eLe~ 237 (943)
+.+|-+.|.++++++++.-.....+++++..
T Consensus 2 ~~eEW~eL~~efq~Lqethr~Y~qKleel~~ 32 (330)
T PF07851_consen 2 CEEEWEELQKEFQELQETHRSYKQKLEELSK 32 (330)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666666655543
No 457
>PLN03025 replication factor C subunit; Provisional
Probab=46.89 E-value=7.8 Score=43.43 Aligned_cols=17 Identities=35% Similarity=0.507 Sum_probs=14.2
Q ss_pred EEEeeCcccCccccccc
Q 002276 442 CIFAYGQTGTGKTFTME 458 (943)
Q Consensus 442 cIFAYGQTGSGKTyTM~ 458 (943)
.++-||+.|+|||++..
T Consensus 36 ~lll~Gp~G~GKTtla~ 52 (319)
T PLN03025 36 NLILSGPPGTGKTTSIL 52 (319)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 35669999999999974
No 458
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=46.72 E-value=2.1e+02 Score=32.25 Aligned_cols=98 Identities=16% Similarity=0.142 Sum_probs=0.0
Q ss_pred ccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccHHHHHHhhHhhhhh
Q 002276 204 ERGVKGDYERLKMSYECQKKELTEAKRTLEELKRENQLKNKEYQETWKSLQELQNELMRKSMHVGSLAFAIEGQVKEKSR 283 (943)
Q Consensus 204 ~~~~~~e~~kL~~~~e~qk~eL~~~e~~i~eLe~en~~K~~E~~e~~~~l~~~q~el~~~~~~v~sL~~~ie~~~~ek~k 283 (943)
+..+.+-+..+...+++.+..+.++...-..|+..++.|..|++-..+-|..+|.----=+.+-..|+.++.++=...-.
T Consensus 164 E~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~lY~~Y~~ 243 (267)
T PF10234_consen 164 EKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQKLYEIYVE 243 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002276 284 WFSSLRDLTRRLKIMKME 301 (943)
Q Consensus 284 l~~~L~~L~~~l~~~k~e 301 (943)
-...+.=|+..+......
T Consensus 244 kfRNl~yLe~qle~~~~~ 261 (267)
T PF10234_consen 244 KFRNLDYLEHQLEEYNRR 261 (267)
T ss_pred HHHhHHHHHHHHHHHHHH
No 459
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=46.57 E-value=11 Score=42.90 Aligned_cols=43 Identities=26% Similarity=0.243 Sum_probs=25.9
Q ss_pred eCCCCCccccccc-chhhHHHhhCC-cceEEEeeCcccCcccccc
Q 002276 415 FGPQADQVDVFQD-TAPFANSVLDG-YNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 415 F~~~asQeeVFee-v~pLV~svLdG-yNvcIFAYGQTGSGKTyTM 457 (943)
|-|.+.-+.++++ +...+...+.+ .---.+-||+.|+|||.|.
T Consensus 30 YrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTSta 74 (346)
T KOG0989|consen 30 YRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTA 74 (346)
T ss_pred hCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHH
Confidence 3343333444444 33544444444 3344678999999999996
No 460
>PRK09183 transposase/IS protein; Provisional
Probab=46.38 E-value=8.2 Score=42.35 Aligned_cols=21 Identities=33% Similarity=0.423 Sum_probs=16.4
Q ss_pred CCcceEEEeeCcccCcccccccc
Q 002276 437 DGYNVCIFAYGQTGTGKTFTMEG 459 (943)
Q Consensus 437 dGyNvcIFAYGQTGSGKTyTM~G 459 (943)
.|.| |+-||++|+||||.+.+
T Consensus 101 ~~~~--v~l~Gp~GtGKThLa~a 121 (259)
T PRK09183 101 RNEN--IVLLGPSGVGKTHLAIA 121 (259)
T ss_pred cCCe--EEEEeCCCCCHHHHHHH
Confidence 4655 45689999999999743
No 461
>KOG2398 consensus Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP) [Cell cycle control, cell division, chromosome partitioning]
Probab=46.38 E-value=6.2e+02 Score=31.82 Aligned_cols=28 Identities=7% Similarity=0.283 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 312 YKKCAAEISEASSTIQSKINHQVQLYEH 339 (943)
Q Consensus 312 ~~~~~~~i~~~~~~lq~~i~~~~~~~e~ 339 (943)
|+..++.+..+..++.++..+....+++
T Consensus 155 y~~~~~~~~~vr~~w~~~~~~~c~~fQ~ 182 (611)
T KOG2398|consen 155 YRSLVAKLEKVRKDWEQEMTDLCLKFQE 182 (611)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444555555555444444443
No 462
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=46.30 E-value=1.2e+02 Score=38.62 Aligned_cols=161 Identities=16% Similarity=0.116 Sum_probs=0.0
Q ss_pred ccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhccHHHHHHhhHhhhh
Q 002276 204 ERGVKGDYERLKMSYECQKKELTEAKRTLEELKREN-QLKNKEYQETWKSLQELQNELMRKSMHVGSLAFAIEGQVKEKS 282 (943)
Q Consensus 204 ~~~~~~e~~kL~~~~e~qk~eL~~~e~~i~eLe~en-~~K~~E~~e~~~~l~~~q~el~~~~~~v~sL~~~ie~~~~ek~ 282 (943)
+.+.+-+.-.+.++.|..+++++.+-++++++++++ +.|-.++.+.........+--.+-..+......+.+..+-.+.
T Consensus 997 ~kefE~~mrdhrselEe~kKe~eaiineiee~eaeIiQekE~el~e~efka~d~Sd~r~kie~efAa~eaemdeik~~~~ 1076 (1424)
T KOG4572|consen 997 EKEFEIEMRDHRSELEEKKKELEAIINEIEELEAEIIQEKEGELIEDEFKALDESDPRAKIEDEFAAIEAEMDEIKDGKC 1076 (1424)
T ss_pred HHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHhhhccccCcchhHHHHHHHHHhhhhhhhhhhh
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 002276 283 RWFSSLRDLTRRLKIMKMEHINLFEEALAYKKCAAEISE------------ASSTIQSKINHQVQLYEHLKIKFIEGTKE 350 (943)
Q Consensus 283 kl~~~L~~L~~~l~~~k~e~~~l~~e~~~~~~~~~~i~~------------~~~~lq~~i~~~~~~~e~l~~kl~~e~~~ 350 (943)
.-..........++..+.+ +|..+...+...+.+-.+ +.-.....+.++...+++-...+.++-..
T Consensus 1077 edrakqkei~k~L~ehele--nLrnEieklndkIkdnne~~QVglae~nslmTiekDmcaselfneheeeS~ifdaa~nK 1154 (1424)
T KOG4572|consen 1077 EDRAKQKEIDKILKEHELE--NLRNEIEKLNDKIKDNNEGDQVGLAEENSLMTIEKDMCASELFNEHEEESGIFDAAGNK 1154 (1424)
T ss_pred hhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhcCCCcchHHHHHhccCCccchhHHHHHHHHHhhhhcchHHHHHHH
Q ss_pred HHHHHhHHHhhcCCEE
Q 002276 351 RKELYNKVLELKGNIR 366 (943)
Q Consensus 351 RrkLhN~lqELKGNIR 366 (943)
-.++||.-.|.--|++
T Consensus 1155 iakiHe~AfEieknlk 1170 (1424)
T KOG4572|consen 1155 IAKIHEIAFEIEKNLK 1170 (1424)
T ss_pred HHHHHHHHHHHHHHHH
No 463
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=46.06 E-value=12 Score=41.46 Aligned_cols=28 Identities=29% Similarity=0.344 Sum_probs=19.1
Q ss_pred hHHHhhCCc-ceEEEeeCcccCccccccc
Q 002276 431 FANSVLDGY-NVCIFAYGQTGTGKTFTME 458 (943)
Q Consensus 431 LV~svLdGy-NvcIFAYGQTGSGKTyTM~ 458 (943)
+...+-.|. ...++-||++|+|||+.+.
T Consensus 33 l~~~~~~~~~~~~lll~G~~G~GKT~la~ 61 (316)
T PHA02544 33 FKSIVKKGRIPNMLLHSPSPGTGKTTVAK 61 (316)
T ss_pred HHHHHhcCCCCeEEEeeCcCCCCHHHHHH
Confidence 333333553 3466679999999999873
No 464
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=46.04 E-value=2.7e+02 Score=26.46 Aligned_cols=20 Identities=20% Similarity=0.273 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 002276 222 KKELTEAKRTLEELKRENQL 241 (943)
Q Consensus 222 k~eL~~~e~~i~eLe~en~~ 241 (943)
..+++.....+.=|+..|..
T Consensus 13 ~~el~~t~~d~~LLe~mN~~ 32 (99)
T PF10046_consen 13 ESELEATNEDYNLLENMNKA 32 (99)
T ss_pred HHhHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433
No 465
>KOG3850 consensus Predicted membrane protein [Function unknown]
Probab=45.90 E-value=5.9e+02 Score=30.31 Aligned_cols=184 Identities=16% Similarity=0.134 Sum_probs=0.0
Q ss_pred ccCCCCCCC-CCCCCCCCCCceeeccccccCCcccccccCCCCCCCCCCCCCeeeecCCcchhhhHhhhhcccccccccc
Q 002276 121 ENGIKGSDD-NNGSHKNKTPSVRFSSFNKEFSPESSLELLPPSTMPEQDPVPVVSINEDYREPMLLEAKRFSQLEECEST 199 (943)
Q Consensus 121 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (943)
+.|+....+ -++.|+|+.|--.|+++ .|-+++--+|+.-..++-....-+--++.+-..-|.+| +| .|.+..
T Consensus 187 ~~g~~d~~v~l~~~~~~~~~e~~~~~l----~~~~tl~~~~~~gs~~E~~S~~~gSa~~~~n~~~g~~~--~n-~~~s~~ 259 (455)
T KOG3850|consen 187 KFGSADNIVHLKAVLENFGPERNARAL----PGSATLVSPPKYGSDDECSSSRPGSAADETNNVPGHGG--AN-PYHSQG 259 (455)
T ss_pred CcccCCCcccccccccccchhhhhccC----CCcccccCCCCCCCCcccccCCCCccccccCCCCCCCC--CC-cccccc
Q ss_pred c-----ccCccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhccHHHH
Q 002276 200 K-----DSGERGVKGDYERLKMSYECQKKELTEAKRTLEELKRENQLKNKEYQETWKSLQE-LQNELMRKSMHVGSLAFA 273 (943)
Q Consensus 200 ~-----~~~~~~~~~e~~kL~~~~e~qk~eL~~~e~~i~eLe~en~~K~~E~~e~~~~l~~-~q~el~~~~~~v~sL~~~ 273 (943)
. -.+=.+|.+-.-.|...|+.|+.++..-=.=|.+.=.|-.-|+..+++.++.+++ .|++...-..++.+.++.
T Consensus 260 ~~l~aileeL~eIk~~q~~Leesye~Lke~~krdy~fi~etLQEERyR~erLEEqLNdlteLqQnEi~nLKqElasmeer 339 (455)
T KOG3850|consen 260 AALDAILEELREIKETQALLEESYERLKEQIKRDYKFIAETLQEERYRYERLEEQLNDLTELQQNEIANLKQELASMEER 339 (455)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhHhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 274 IEGQVKEKSR-WFSSLRDLTRRLKIMKMEHINLFEEALAYK 313 (943)
Q Consensus 274 ie~~~~ek~k-l~~~L~~L~~~l~~~k~e~~~l~~e~~~~~ 313 (943)
++-+.-+..+ ..+.++.++..|. |.|.....+++.+++
T Consensus 340 vaYQsyERaRdIqEalEscqtris--KlEl~qq~qqv~Q~e 378 (455)
T KOG3850|consen 340 VAYQSYERARDIQEALESCQTRIS--KLELQQQQQQVVQLE 378 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
No 466
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=45.77 E-value=8 Score=44.13 Aligned_cols=27 Identities=30% Similarity=0.242 Sum_probs=19.0
Q ss_pred hhHHHhhCCcceEEEeeCcccCcccccc
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
.++..++.+. ..|+..|.||||||.+|
T Consensus 151 ~~L~~~v~~~-~nili~G~tgSGKTTll 177 (332)
T PRK13900 151 EFLEHAVISK-KNIIISGGTSTGKTTFT 177 (332)
T ss_pred HHHHHHHHcC-CcEEEECCCCCCHHHHH
Confidence 4455444432 34777899999999998
No 467
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=45.74 E-value=9 Score=42.89 Aligned_cols=17 Identities=41% Similarity=0.692 Sum_probs=14.4
Q ss_pred eEEEeeCcccCcccccc
Q 002276 441 VCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 441 vcIFAYGQTGSGKTyTM 457 (943)
-.|+-||++|+|||++-
T Consensus 152 knVLFyGppGTGKTm~A 168 (368)
T COG1223 152 KNVLFYGPPGTGKTMMA 168 (368)
T ss_pred ceeEEECCCCccHHHHH
Confidence 45788999999999874
No 468
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=45.60 E-value=3.3e+02 Score=31.20 Aligned_cols=10 Identities=20% Similarity=0.159 Sum_probs=4.1
Q ss_pred HHHHhHHHhh
Q 002276 352 KELYNKVLEL 361 (943)
Q Consensus 352 rkLhN~lqEL 361 (943)
++|.-+|.+.
T Consensus 236 ~klk~qLee~ 245 (302)
T PF09738_consen 236 RKLKLQLEER 245 (302)
T ss_pred HHHHHHHHHH
Confidence 3344444443
No 469
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=45.44 E-value=5.9e+02 Score=30.18 Aligned_cols=44 Identities=18% Similarity=0.299 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 002276 311 AYKKCAAEISEASSTIQSKINHQVQLYEHLKIKFIEGTKERKELY 355 (943)
Q Consensus 311 ~~~~~~~~i~~~~~~lq~~i~~~~~~~e~l~~kl~~e~~~RrkLh 355 (943)
+|..++.++..-.. ...+++......++--.++.+++..||+-|
T Consensus 347 aY~~LL~Ev~RRr~-~~~k~~~i~~~~~eeL~~l~eeE~~~Re~F 390 (412)
T PF04108_consen 347 AYDSLLLEVERRRA-VRDKMKKIIREANEELDKLREEEQRRREAF 390 (412)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555544322 233444333333333345556666666655
No 470
>PF07794 DUF1633: Protein of unknown function (DUF1633); InterPro: IPR012436 This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana (Mouse-ear cress). These sequences are highly similar and the region concerned is about 100 residues long.
Probab=45.36 E-value=4.7e+02 Score=31.97 Aligned_cols=33 Identities=15% Similarity=0.260 Sum_probs=20.8
Q ss_pred ccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 204 ERGVKGDYERLKMSYECQKKELTEAKRTLEELK 236 (943)
Q Consensus 204 ~~~~~~e~~kL~~~~e~qk~eL~~~e~~i~eLe 236 (943)
|.|..+++--++.+|+.|+-......++|..|+
T Consensus 592 ekG~Aeki~~me~Ei~glq~DkQ~ar~qIh~Le 624 (790)
T PF07794_consen 592 EKGYAEKIGFMEMEIGGLQADKQTARNQIHRLE 624 (790)
T ss_pred hhhhHhhhhhhhhhhcchhhhHHHHHHHHHHHH
Confidence 456666666666666666666666666666553
No 471
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=45.15 E-value=9.3 Score=44.45 Aligned_cols=17 Identities=41% Similarity=0.423 Sum_probs=14.5
Q ss_pred eEEEeeCcccCcccccc
Q 002276 441 VCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 441 vcIFAYGQTGSGKTyTM 457 (943)
..|.-+|+||+|||+|+
T Consensus 138 ~ii~lvGptGvGKTTti 154 (374)
T PRK14722 138 GVFALMGPTGVGKTTTT 154 (374)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35667899999999997
No 472
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=45.14 E-value=3.8e+02 Score=30.38 Aligned_cols=26 Identities=27% Similarity=0.212 Sum_probs=11.7
Q ss_pred ccHHHHHHhhHhhhhhHHHHHHHHHH
Q 002276 268 GSLAFAIEGQVKEKSRWFSSLRDLTR 293 (943)
Q Consensus 268 ~sL~~~ie~~~~ek~kl~~~L~~L~~ 293 (943)
..|...|+..+.+.+++...|..|+.
T Consensus 136 a~L~~Kierrk~ElEr~rkRle~Lqs 161 (338)
T KOG3647|consen 136 AALGSKIERRKAELERTRKRLEALQS 161 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444443
No 473
>cd09237 V_ScBro1_like Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains. This family contains the V-shaped (V) domain of Saccharomyces cerevisiae Bro1, and related domains. It belongs to the V_Alix_like superfamily which also includes the V-domain of Saccharomyces cerevisiae Rim20 (also known as PalA), mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Bro1 interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in endosomal trafficking. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. Bro1 also has an N-terminal Bro1-like domain, which binds Snf7, a component of the ESCRT-III complex, and a C-terminal proline-rich
Probab=45.12 E-value=3.8e+02 Score=30.87 Aligned_cols=160 Identities=11% Similarity=0.081 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccHHHHHHhhHhhhhhHHHHHH
Q 002276 210 DYERLKMSYECQKKELTEAKRTLEELKRENQLKNKEYQETWKSLQELQNELMRKSMHVGSLAFAIEGQVKEKSRWFSSLR 289 (943)
Q Consensus 210 e~~kL~~~~e~qk~eL~~~e~~i~eLe~en~~K~~E~~e~~~~l~~~q~el~~~~~~v~sL~~~ie~~~~ek~kl~~~L~ 289 (943)
........++.+-++|..++..-..+..+.+.|.....-.-.-+.... ......-.=...++++.......+...+.
T Consensus 195 ~~~~~i~~L~~ll~~l~~lk~eR~~~~~~Lk~k~~~DDI~~~ll~~~~---~~~~~~e~lF~~eL~kf~p~~~~l~~~~~ 271 (356)
T cd09237 195 TVLKQIKQLEELLEDLNLIKEERQRVLKDLKQKIHNDDISDILILNSK---SKSEIEKQLFPEELEKFKPLQNRLEATIF 271 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHhcc---cccchHHHHHHHHHHHcchHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHhhcCCEEE
Q 002276 290 DLTRRLKIMKMEHINLFEEAL--AYKKCAAEISEASSTIQSKINHQVQLYEHLKIKFIEGTKERKELYNKVLELKGNIRV 367 (943)
Q Consensus 290 ~L~~~l~~~k~e~~~l~~e~~--~~~~~~~~i~~~~~~lq~~i~~~~~~~e~l~~kl~~e~~~RrkLhN~lqELKGNIRV 367 (943)
.-..-++.++..+..+.+... ................-+.+......|.++...+.+...-=..|.+.+..++.+|.-
T Consensus 272 ~Q~~ll~el~~~~~~f~~~~~~~~~~~~~~~~~~~R~~~l~~l~~ay~~y~el~~~l~~G~~FY~dL~~~~~~l~~~~~~ 351 (356)
T cd09237 272 KQSSLINELKIELDKLFKLPGVKEKQSKEKSKQKLRKEFFEKLKKAYNSFKKFSAGLPKGLEFYDDLLKMAKDLAKNVQA 351 (356)
T ss_pred HHHHHHHHHHHHHHHHHhCccHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred EEEeC
Q 002276 368 FCRCR 372 (943)
Q Consensus 368 ~~RVR 372 (943)
||--|
T Consensus 352 fv~~R 356 (356)
T cd09237 352 FVNQR 356 (356)
T ss_pred HhhcC
No 474
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=45.11 E-value=13 Score=43.90 Aligned_cols=26 Identities=42% Similarity=0.567 Sum_probs=21.1
Q ss_pred hhHHHhhCCcceEEEeeCcccCcccccc
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
..+..+++|.| |++-.+||||||.+.
T Consensus 30 ~ai~~il~g~d--vlv~apTGsGKTla~ 55 (456)
T PRK10590 30 QAIPAVLEGRD--LMASAQTGTGKTAGF 55 (456)
T ss_pred HHHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 45677889988 677789999999874
No 475
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=44.98 E-value=6.7e+02 Score=30.71 Aligned_cols=31 Identities=19% Similarity=0.281 Sum_probs=17.7
Q ss_pred hHHHHHHHHHhHHHhhcCCEEEEEE--eCCCCc
Q 002276 346 EGTKERKELYNKVLELKGNIRVFCR--CRPLNS 376 (943)
Q Consensus 346 ~e~~~RrkLhN~lqELKGNIRV~~R--VRPl~~ 376 (943)
.+......|+..+..|+..+.--.. -+||..
T Consensus 402 ~~~~~~~~l~~a~~~l~~~l~~~~~~~~~p~~~ 434 (582)
T PF09731_consen 402 DENRRAQQLWLAVDALKSALDSGNAGSPRPFED 434 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcCCCCHHH
Confidence 4445556677777777765554433 356543
No 476
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=44.93 E-value=1.7e+02 Score=28.15 Aligned_cols=49 Identities=27% Similarity=0.443 Sum_probs=21.8
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHH
Q 002276 668 EKTKQELKSRDVQSKRMEDTIHGL--DLKLKDKDLKIKSLQDKVKELETQL 716 (943)
Q Consensus 668 e~LK~eL~~~~~q~~~lE~~i~~l--~~kl~e~d~~i~~LqekikeLE~qL 716 (943)
+.+.+.+...+.++..+|..+..+ ...+.+....+..+.-+++.++.++
T Consensus 38 ~~l~~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l 88 (106)
T PF10805_consen 38 EKLEERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARL 88 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 333334444444444444444444 2333344444444455555555444
No 477
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=44.81 E-value=1.5e+02 Score=26.94 Aligned_cols=57 Identities=25% Similarity=0.358 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 664 KQMVEKTKQELKSRDVQSKRMEDTIHGLDLKLKDKDLKIKSLQDKVKELETQLLVER 720 (943)
Q Consensus 664 k~~ie~LK~eL~~~~~q~~~lE~~i~~l~~kl~e~d~~i~~LqekikeLE~qL~~er 720 (943)
-.+|+.|..+-..+..+.-...+.|..|..++.+.+..+..+..++..++..+...+
T Consensus 11 De~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~ 67 (74)
T PF12329_consen 11 DEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLE 67 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777766666666667788888888888888888888888888887775443
No 478
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=44.80 E-value=19 Score=45.27 Aligned_cols=43 Identities=28% Similarity=0.359 Sum_probs=33.2
Q ss_pred cceeeCCCCCccccccc-c------hhhHHHhhCCcceEEEeeCcccCccccc
Q 002276 411 FDAVFGPQADQVDVFQD-T------APFANSVLDGYNVCIFAYGQTGTGKTFT 456 (943)
Q Consensus 411 FD~VF~~~asQeeVFee-v------~pLV~svLdGyNvcIFAYGQTGSGKTyT 456 (943)
+++-+++++-|..+|-. + ..+++.+| |.|+.|-+ +||+|||+.
T Consensus 43 ~~~~~~~s~~~~~~~p~~~~lR~YQ~eivq~AL-gkNtii~l--PTG~GKTfI 92 (746)
T KOG0354|consen 43 ASHSLDESAAQRWIYPTNLELRNYQEELVQPAL-GKNTIIAL--PTGSGKTFI 92 (746)
T ss_pred ccCCCChhhhccccccCcccccHHHHHHhHHhh-cCCeEEEe--ecCCCccch
Confidence 35667777777777753 2 25899999 99987766 999999986
No 479
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=44.55 E-value=9.1 Score=41.60 Aligned_cols=17 Identities=35% Similarity=0.501 Sum_probs=14.5
Q ss_pred eEEEeeCcccCcccccc
Q 002276 441 VCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 441 vcIFAYGQTGSGKTyTM 457 (943)
..++-||++|||||++.
T Consensus 43 ~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVA 59 (261)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 34677999999999986
No 480
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=44.51 E-value=31 Score=43.84 Aligned_cols=37 Identities=24% Similarity=0.369 Sum_probs=25.9
Q ss_pred cceEEEeeCcccCcccccc--------ccCC--CCCCcc----HHhHHHHH
Q 002276 439 YNVCIFAYGQTGTGKTFTM--------EGTK--EARGVN----FRTLEELF 475 (943)
Q Consensus 439 yNvcIFAYGQTGSGKTyTM--------~G~~--e~~GII----PRal~~LF 475 (943)
-|-.++.+|+||||||.-+ +|.+ .++|+| ||-+..|-
T Consensus 270 ~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaia 320 (1172)
T KOG0926|consen 270 ENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIA 320 (1172)
T ss_pred cCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHH
Confidence 4566788899999999987 3433 247887 66655543
No 481
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=44.27 E-value=12 Score=43.99 Aligned_cols=43 Identities=30% Similarity=0.490 Sum_probs=32.5
Q ss_pred ecceeeCCCCCcccccccchhhHHHhhCCcceEEEeeCcccCccccc
Q 002276 410 KFDAVFGPQADQVDVFQDTAPFANSVLDGYNVCIFAYGQTGTGKTFT 456 (943)
Q Consensus 410 ~FD~VF~~~asQeeVFeev~pLV~svLdGyNvcIFAYGQTGSGKTyT 456 (943)
+||.|++ |+.+..+-.+|-.-+-.|.=...+-||+.|+|||.-
T Consensus 22 ~lde~vG----Q~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTl 64 (436)
T COG2256 22 SLDEVVG----QEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTL 64 (436)
T ss_pred CHHHhcC----hHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHH
Confidence 4566655 777776666666666678778888999999999975
No 482
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=44.13 E-value=6.7e+02 Score=32.35 Aligned_cols=15 Identities=27% Similarity=0.631 Sum_probs=10.8
Q ss_pred HhhCCcceEEEeeCc
Q 002276 434 SVLDGYNVCIFAYGQ 448 (943)
Q Consensus 434 svLdGyNvcIFAYGQ 448 (943)
.++.|+.+..+-.|-
T Consensus 728 a~~~g~~~v~IIHGk 742 (782)
T PRK00409 728 ALLAGYGEVLIIHGK 742 (782)
T ss_pred HHHcCCCEEEEEcCC
Confidence 344788888888775
No 483
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=43.97 E-value=1.2e+02 Score=37.33 Aligned_cols=41 Identities=15% Similarity=0.247 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Q 002276 215 KMSYECQKKELTEAKRTLEELKREN--QLKNKEYQETWKSLQE 255 (943)
Q Consensus 215 ~~~~e~qk~eL~~~e~~i~eLe~en--~~K~~E~~e~~~~l~~ 255 (943)
..+++..+..+++++..|.....+. ..+..+|+...+.++.
T Consensus 163 ~~~~~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~ 205 (555)
T TIGR03545 163 VETAEEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKK 205 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHh
Confidence 3445555555555555555555444 5556666665555543
No 484
>PRK10536 hypothetical protein; Provisional
Probab=43.89 E-value=13 Score=41.30 Aligned_cols=41 Identities=22% Similarity=0.412 Sum_probs=26.3
Q ss_pred eeecceeeCCCCCcccccccchhhHHHhhCCcceEEEeeCcccCcccccc
Q 002276 408 TFKFDAVFGPQADQVDVFQDTAPFANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 408 tF~FD~VF~~~asQeeVFeev~pLV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
.|.|-.|-+-+..|.. ++..+.+ +.-||..|.+||||||..
T Consensus 51 ~~~~~~i~p~n~~Q~~-------~l~al~~--~~lV~i~G~aGTGKT~La 91 (262)
T PRK10536 51 SRDTSPILARNEAQAH-------YLKAIES--KQLIFATGEAGCGKTWIS 91 (262)
T ss_pred hcCCccccCCCHHHHH-------HHHHHhc--CCeEEEECCCCCCHHHHH
Confidence 3555555555544443 2333444 348899999999999975
No 485
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=43.58 E-value=1.7e+02 Score=30.52 Aligned_cols=15 Identities=13% Similarity=0.290 Sum_probs=7.9
Q ss_pred hhHHHHHHHHHHHHH
Q 002276 209 GDYERLKMSYECQKK 223 (943)
Q Consensus 209 ~e~~kL~~~~e~qk~ 223 (943)
-+.+.+.+.+-.|+.
T Consensus 89 ~~~~~~~~~fraQRN 103 (192)
T PF05529_consen 89 TEDQVLAKKFRAQRN 103 (192)
T ss_pred hhHHHHHHHHHHHHh
Confidence 345555555555554
No 486
>PF15294 Leu_zip: Leucine zipper
Probab=43.35 E-value=5.5e+02 Score=29.24 Aligned_cols=26 Identities=19% Similarity=0.297 Sum_probs=15.7
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHH
Q 002276 207 VKGDYERLKMSYECQKKELTEAKRTL 232 (943)
Q Consensus 207 ~~~e~~kL~~~~e~qk~eL~~~e~~i 232 (943)
+..|+.+|..+.+.++.-+..++..-
T Consensus 130 l~kEi~rLq~EN~kLk~rl~~le~~a 155 (278)
T PF15294_consen 130 LNKEIDRLQEENEKLKERLKSLEKQA 155 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666654443
No 487
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=43.23 E-value=1.4e+02 Score=32.30 Aligned_cols=54 Identities=28% Similarity=0.327 Sum_probs=32.7
Q ss_pred hhHhhhhcccccccccccccCccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 183 MLLEAKRFSQLEECESTKDSGERGVKGDYERLKMSYECQKKELTEAKRTLEELKREN 239 (943)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~kL~~~~e~qk~eL~~~e~~i~eLe~en 239 (943)
+-|+..|+-|..=. ..|..+.-.--+..|....+.+.+++...++.|+++..+=
T Consensus 113 lehq~~R~~NLeLl---~~~g~naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~R 166 (221)
T PF05700_consen 113 LEHQRLRLENLELL---SKYGENAWLIHNEQLEAMLKRLEKELAKLKKEIEEVNRER 166 (221)
T ss_pred HHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55777777776422 2344444445556666777777777777777777665533
No 488
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=42.89 E-value=13 Score=43.11 Aligned_cols=42 Identities=33% Similarity=0.599 Sum_probs=31.1
Q ss_pred EEEeeCcccCcccccc--------------ccCC---CCCCccHHhHHHHHHHHHhhcc
Q 002276 442 CIFAYGQTGTGKTFTM--------------EGTK---EARGVNFRTLEELFRIIKEREK 483 (943)
Q Consensus 442 cIFAYGQTGSGKTyTM--------------~G~~---e~~GIIPRal~~LF~~i~~~~~ 483 (943)
-|+-||+.|+|||-.- .|+. .--|=-+|.+++||....++..
T Consensus 187 GVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lArekaP 245 (406)
T COG1222 187 GVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKAP 245 (406)
T ss_pred ceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhhcCC
Confidence 3899999999998542 2221 1246679999999999887654
No 489
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=42.74 E-value=53 Score=42.33 Aligned_cols=37 Identities=11% Similarity=0.118 Sum_probs=19.4
Q ss_pred CccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 203 GERGVKGDYERLKMSYECQKKELTEAKRTLEELKREN 239 (943)
Q Consensus 203 ~~~~~~~e~~kL~~~~e~qk~eL~~~e~~i~eLe~en 239 (943)
+......++.++.+...++..+-....++..++....
T Consensus 429 ~~~~~~~~l~~~~s~~~~l~~~~~~~~~k~~e~~~~~ 465 (847)
T KOG0998|consen 429 PVLELANELSNLASTSQQLPAQKDTVQDKLNELDAQK 465 (847)
T ss_pred ccccchhhhhhcchhhhccccccchhhhhhhhhhhhh
Confidence 3444455555555555555555555545555554444
No 490
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=42.63 E-value=3.2e+02 Score=26.29 Aligned_cols=26 Identities=4% Similarity=0.097 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 212 ERLKMSYECQKKELTEAKRTLEELKR 237 (943)
Q Consensus 212 ~kL~~~~e~qk~eL~~~e~~i~eLe~ 237 (943)
+.+...|+.++.++..+..++..++.
T Consensus 6 q~~~~~~q~~q~~~~~l~~q~~~le~ 31 (110)
T TIGR02338 6 QNQLAQLQQLQQQLQAVATQKQQVEA 31 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555444444443
No 491
>PRK06547 hypothetical protein; Provisional
Probab=42.62 E-value=17 Score=37.51 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=18.1
Q ss_pred HHHhhCCcceEEEeeCcccCcccccc
Q 002276 432 ANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 432 V~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
+..+..+.---|.-+|.+|||||+.-
T Consensus 7 ~~~~~~~~~~~i~i~G~~GsGKTt~a 32 (172)
T PRK06547 7 AARLCGGGMITVLIDGRSGSGKTTLA 32 (172)
T ss_pred HHHhhcCCCEEEEEECCCCCCHHHHH
Confidence 44444455555666799999999875
No 492
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=42.53 E-value=1.9e+02 Score=26.75 Aligned_cols=38 Identities=18% Similarity=0.406 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 213 RLKMSYECQKKELTEAKRTLEELKRENQLKNKEYQETWKSLQ 254 (943)
Q Consensus 213 kL~~~~e~qk~eL~~~e~~i~eLe~en~~K~~E~~e~~~~l~ 254 (943)
.+..+|..+..++..+..++..++.+. .+++..+..|.
T Consensus 2 e~~~~~~~l~~~l~~~~~q~~~l~~~~----~~~~~~~~eL~ 39 (106)
T PF01920_consen 2 ELQNKFQELNQQLQQLEQQIQQLERQL----RELELTLEELE 39 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 355667777777777777776665533 23444444443
No 493
>PRK04406 hypothetical protein; Provisional
Probab=42.50 E-value=1.6e+02 Score=26.90 Aligned_cols=55 Identities=22% Similarity=0.307 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 002276 664 KQMVEKTKQELKSRDVQSKRMEDTIHGLDLKLKDKDLKIKSLQDKVKELETQLLV 718 (943)
Q Consensus 664 k~~ie~LK~eL~~~~~q~~~lE~~i~~l~~kl~e~d~~i~~LqekikeLE~qL~~ 718 (943)
.+.+..+.+.+..+..++...+..+..|...+.++...|..|+.+++.|-.++..
T Consensus 3 ~~~~~~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 3 EKTIEQLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 494
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=42.28 E-value=12 Score=44.15 Aligned_cols=26 Identities=38% Similarity=0.323 Sum_probs=0.0
Q ss_pred hHHHhhCCcceEEEeeCcccCccccccc
Q 002276 431 FANSVLDGYNVCIFAYGQTGTGKTFTME 458 (943)
Q Consensus 431 LV~svLdGyNvcIFAYGQTGSGKTyTM~ 458 (943)
.+..+++|.|+.+.| +||||||.+..
T Consensus 117 ai~~~~~G~dvi~~a--pTGSGKTlay~ 142 (475)
T PRK01297 117 VLGYTLAGHDAIGRA--QTGTGKTAAFL 142 (475)
T ss_pred HHHHHhCCCCEEEEC--CCCChHHHHHH
No 495
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=42.26 E-value=1.3e+02 Score=32.38 Aligned_cols=97 Identities=11% Similarity=0.088 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhhhccHHHHHHhhHhhhhhHHHHHHHHHHHH
Q 002276 217 SYECQKKELTEAKRTLEELKRENQLKNKEYQETWKSLQELQNELMR-KSMHVGSLAFAIEGQVKEKSRWFSSLRDLTRRL 295 (943)
Q Consensus 217 ~~e~qk~eL~~~e~~i~eLe~en~~K~~E~~e~~~~l~~~q~el~~-~~~~v~sL~~~ie~~~~ek~kl~~~L~~L~~~l 295 (943)
+.-.|++||.+++.+|...+.+.......-...|.-+.+.=+.|.+ +..++..+......-......+...|+.+++.+
T Consensus 97 EevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~Dl~~ie~QV 176 (195)
T PF12761_consen 97 EEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLRELEEGRSKSGKNLKSVREDLDTIEEQV 176 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002276 296 KIMKMEHINLFEEALAYK 313 (943)
Q Consensus 296 ~~~k~e~~~l~~e~~~~~ 313 (943)
..++.-...=.+++..++
T Consensus 177 ~~Le~~L~~k~~eL~~L~ 194 (195)
T PF12761_consen 177 DGLESHLSSKKQELQQLR 194 (195)
T ss_pred HHHHHHHHHHHHHHHHhc
No 496
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=42.09 E-value=17 Score=41.05 Aligned_cols=33 Identities=33% Similarity=0.569 Sum_probs=0.0
Q ss_pred cccch-hhH-HHhhCCcceEEEeeCcccCcccccc
Q 002276 425 FQDTA-PFA-NSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 425 Feev~-pLV-~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
|+.+- +|| .++-.||.-.|++.|.||.|||.-|
T Consensus 25 FdsLPdQLV~ksv~~GF~FNilCvGETg~GKsTLm 59 (406)
T KOG3859|consen 25 FDSLPDQLVNKSVSQGFCFNILCVGETGLGKSTLM 59 (406)
T ss_pred cccChHHHHHHHHhcCceEEEEEeccCCccHHHHH
No 497
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=42.01 E-value=8.8e+02 Score=31.26 Aligned_cols=136 Identities=22% Similarity=0.260 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH-----------hhhhh
Q 002276 214 LKMSYECQKKELTEAK------------RTLEELKRENQLKNKE---YQETWKSLQELQNELMR-----------KSMHV 267 (943)
Q Consensus 214 L~~~~e~qk~eL~~~e------------~~i~eLe~en~~K~~E---~~e~~~~l~~~q~el~~-----------~~~~v 267 (943)
|..+++.+++|+...+ .+|+.|+.|..+...+ +-.....|.-++.++.+ -+..+
T Consensus 434 Le~elekLk~eilKAk~s~~~~~~~~L~e~IeKLk~E~d~e~S~A~~~~gLk~kL~~Lr~E~sKa~~~~~~~~~~L~eK~ 513 (762)
T PLN03229 434 LEGEVEKLKEQILKAKESSSKPSELALNEMIEKLKKEIDLEYTEAVIAMGLQERLENLREEFSKANSQDQLMHPVLMEKI 513 (762)
T ss_pred HHHHHHHHHHHHHhcccccCCCCChHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhcccccccccHHHHHHH
Q ss_pred ccHHHHHHhhHhh---------------------------------hhhHHHHHHH------HHHHHHHHHHHHHH----
Q 002276 268 GSLAFAIEGQVKE---------------------------------KSRWFSSLRD------LTRRLKIMKMEHIN---- 304 (943)
Q Consensus 268 ~sL~~~ie~~~~e---------------------------------k~kl~~~L~~------L~~~l~~~k~e~~~---- 304 (943)
..|+.++.....+ +..++.++.+ +++++++++.+...
T Consensus 514 ~kLk~Efnkkl~ea~n~p~lk~Kle~Lk~~~~~~~~s~g~~~a~~Lk~ei~kki~e~~~~~~~kek~ea~~aev~~~g~s 593 (762)
T PLN03229 514 EKLKDEFNKRLSRAPNYLSLKYKLDMLNEFSRAKALSEKKSKAEKLKAEINKKFKEVMDRPEIKEKMEALKAEVASSGAS 593 (762)
T ss_pred HHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhhhhcccchhhhhhhHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcc
Q ss_pred --------HHHHHHHHHHHHH-----------------------------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 305 --------LFEEALAYKKCAA-----------------------------------EISEASSTIQSKINHQVQLYEHLK 341 (943)
Q Consensus 305 --------l~~e~~~~~~~~~-----------------------------------~i~~~~~~lq~~i~~~~~~~e~l~ 341 (943)
|.+.+..+++.+. .|+.+.++|+++|..... --+|+
T Consensus 594 ~~~~~~~~lkeki~~~~~Ei~~eie~v~~S~gL~~~~~~k~e~a~~~~~p~~~~k~KIe~L~~eIkkkIe~av~-ss~LK 672 (762)
T PLN03229 594 SGDELDDDLKEKVEKMKKEIELELAGVLKSMGLEVIGVTKKNKDTAEQTPPPNLQEKIESLNEEINKKIERVIR-SSDLK 672 (762)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhhhhhhcccccCCChhhHHHHHHHHHHHHHHHHHHhc-chhHH
Q ss_pred HHHHhHHHH
Q 002276 342 IKFIEGTKE 350 (943)
Q Consensus 342 ~kl~~e~~~ 350 (943)
.++..-..+
T Consensus 673 ~k~E~Lk~E 681 (762)
T PLN03229 673 SKIELLKLE 681 (762)
T ss_pred HHHHHHHHH
No 498
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=41.96 E-value=7.8e+02 Score=30.68 Aligned_cols=143 Identities=15% Similarity=0.085 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccHHHHHHhhHhhhhhHHHHHHHHHH
Q 002276 214 LKMSYECQKKELTEAKRTLEELKRENQLKNKEYQETWKSLQELQNELMRKSMHVGSLAFAIEGQVKEKSRWFSSLRDLTR 293 (943)
Q Consensus 214 L~~~~e~qk~eL~~~e~~i~eLe~en~~K~~E~~e~~~~l~~~q~el~~~~~~v~sL~~~ie~~~~ek~kl~~~L~~L~~ 293 (943)
+.-........+.++-.++.++......-..++++....+...-+++.-+-.++...+..+.....-+.+....+.++-+
T Consensus 246 ~l~~a~~~l~~~~~~d~~l~~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~ve~Rl~~L~~l~RKY~~~~~~l~~ 325 (557)
T COG0497 246 LLGRALEALEDLSEYDGKLSELAELLEEALYELEEASEELRAYLDELEFDPNRLEEVEERLFALKSLARKYGVTIEDLLE 325 (557)
T ss_pred HHHHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHhhc
Q 002276 294 RLKIMKMEHINLFEEALAYKKCAAEISEASSTIQSKINHQVQLYEHLKIKFIEGTKERKELYNKVLELK 362 (943)
Q Consensus 294 ~l~~~k~e~~~l~~e~~~~~~~~~~i~~~~~~lq~~i~~~~~~~e~l~~kl~~e~~~RrkLhN~lqELK 362 (943)
....++.+...|...-..++..-.++..+..++......+......... .+.+.++++|.+|.
T Consensus 326 ~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~A~------~L~~~v~~eL~~L~ 388 (557)
T COG0497 326 YLDKIKEELAQLDNSEESLEALEKEVKKLKAELLEAAEALSAIRKKAAK------ELEKEVTAELKALA 388 (557)
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhcC
No 499
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=41.88 E-value=9.7 Score=42.78 Aligned_cols=43 Identities=21% Similarity=0.252 Sum_probs=0.0
Q ss_pred eCCCCCcccccccchhhHHHhhCCcce--EEEeeCcccCcccccc
Q 002276 415 FGPQADQVDVFQDTAPFANSVLDGYNV--CIFAYGQTGTGKTFTM 457 (943)
Q Consensus 415 F~~~asQeeVFeev~pLV~svLdGyNv--cIFAYGQTGSGKTyTM 457 (943)
|+.-..|+++-+.+..++......-.. .++-||++|+|||+..
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la 68 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLA 68 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHH
No 500
>PRK02119 hypothetical protein; Provisional
Probab=41.82 E-value=1.4e+02 Score=27.16 Aligned_cols=54 Identities=13% Similarity=0.247 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 002276 665 QMVEKTKQELKSRDVQSKRMEDTIHGLDLKLKDKDLKIKSLQDKVKELETQLLV 718 (943)
Q Consensus 665 ~~ie~LK~eL~~~~~q~~~lE~~i~~l~~kl~e~d~~i~~LqekikeLE~qL~~ 718 (943)
.++..+...+..+..++...+..+..|...+.++...|..|+.++..|-.++..
T Consensus 2 ~~~~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 2 QIQQNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Done!