Query 002276
Match_columns 943
No_of_seqs 529 out of 2257
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 19:46:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002276.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002276hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u06_A Protein claret segregat 100.0 1.6E-80 5.6E-85 699.5 31.0 337 311-654 7-390 (412)
2 4etp_A Kinesin-like protein KA 100.0 1.7E-80 5.7E-85 698.2 29.8 338 312-651 8-402 (403)
3 3cob_A Kinesin heavy chain-lik 100.0 2.8E-77 9.6E-82 664.9 21.9 309 359-673 1-353 (369)
4 2rep_A Kinesin-like protein KI 100.0 3.9E-75 1.3E-79 649.1 20.3 294 351-646 10-376 (376)
5 3lre_A Kinesin-like protein KI 100.0 1.4E-74 4.9E-79 640.7 22.1 283 354-646 1-355 (355)
6 2owm_A Nckin3-434, related to 100.0 1.5E-74 5E-79 656.3 22.1 297 357-657 32-424 (443)
7 2y65_A Kinesin, kinesin heavy 100.0 1.4E-74 4.9E-79 642.6 20.8 299 360-669 8-358 (365)
8 2h58_A Kinesin-like protein KI 100.0 4.1E-74 1.4E-78 631.6 23.0 285 360-648 1-330 (330)
9 2vvg_A Kinesin-2; motor protei 100.0 2.7E-74 9.1E-79 637.3 21.4 288 362-657 3-346 (350)
10 3b6u_A Kinesin-like protein KI 100.0 2.3E-74 7.8E-79 642.0 20.7 298 356-660 14-367 (372)
11 3t0q_A AGR253WP; kinesin, alph 100.0 5E-74 1.7E-78 635.1 23.2 290 359-650 1-348 (349)
12 3bfn_A Kinesin-like protein KI 100.0 1.7E-74 5.9E-79 645.5 18.9 294 357-658 15-359 (388)
13 1goj_A Kinesin, kinesin heavy 100.0 1.2E-73 4E-78 633.3 21.5 287 362-657 5-341 (355)
14 1t5c_A CENP-E protein, centrom 100.0 3.7E-73 1.3E-77 628.1 22.8 286 362-658 3-340 (349)
15 1f9v_A Kinesin-like protein KA 100.0 4.2E-73 1.4E-77 627.3 22.0 289 361-651 1-346 (347)
16 1x88_A Kinesin-like protein KI 100.0 1.7E-73 5.9E-78 632.9 17.3 289 360-654 5-358 (359)
17 2zfi_A Kinesin-like protein KI 100.0 6.1E-73 2.1E-77 629.9 20.8 285 362-654 3-362 (366)
18 1bg2_A Kinesin; motor protein, 100.0 5.5E-73 1.9E-77 621.5 19.8 274 360-646 4-325 (325)
19 2heh_A KIF2C protein; kinesin, 100.0 4.2E-73 1.4E-77 634.1 16.2 302 338-649 27-385 (387)
20 2wbe_C Bipolar kinesin KRP-130 100.0 4.6E-73 1.6E-77 632.2 15.8 288 359-655 19-370 (373)
21 1v8k_A Kinesin-like protein KI 100.0 6.9E-73 2.4E-77 636.1 17.2 303 338-650 47-406 (410)
22 3nwn_A Kinesin-like protein KI 100.0 1.1E-72 3.7E-77 626.3 16.4 284 360-646 21-359 (359)
23 4a14_A Kinesin, kinesin-like p 100.0 7.5E-72 2.5E-76 616.7 22.2 273 362-644 10-344 (344)
24 3gbj_A KIF13B protein; kinesin 100.0 3.1E-71 1.1E-75 613.8 20.2 276 363-645 1-349 (354)
25 1ry6_A Internal kinesin; kines 100.0 4.5E-71 1.5E-75 613.5 19.7 285 364-657 1-342 (360)
26 2nr8_A Kinesin-like protein KI 100.0 2E-71 6.7E-76 616.0 16.7 281 357-646 17-358 (358)
27 3dc4_A Kinesin-like protein NO 100.0 3.8E-68 1.3E-72 586.9 18.0 275 360-651 19-340 (344)
28 4h1g_A Maltose binding protein 100.0 4.4E-66 1.5E-70 617.0 24.8 292 352-648 363-713 (715)
29 2o0a_A S.cerevisiae chromosome 100.0 1.1E-36 3.8E-41 324.5 11.8 263 342-650 3-293 (298)
30 3kin_B Kinesin heavy chain; mo 99.8 9.8E-21 3.3E-25 180.1 9.5 65 594-658 20-84 (117)
31 2kin_B Kinesin; motor protein, 99.8 1.5E-20 5.1E-25 174.2 4.6 65 594-658 24-88 (100)
32 4etp_B Spindle POLE BODY-assoc 99.0 1.1E-08 3.7E-13 110.9 16.8 181 315-522 11-197 (333)
33 1c1g_A Tropomyosin; contractIl 96.9 0.19 6.5E-06 50.6 23.5 32 209-240 6-37 (284)
34 1c1g_A Tropomyosin; contractIl 96.9 0.18 6E-06 50.8 23.1 24 215-238 5-28 (284)
35 2v71_A Nuclear distribution pr 96.7 0.25 8.7E-06 50.6 22.3 135 209-360 17-155 (189)
36 1i84_S Smooth muscle myosin he 96.3 0.0077 2.6E-07 76.4 9.4 33 208-240 856-888 (1184)
37 2dfs_A Myosin-5A; myosin-V, in 96.1 0.083 2.8E-06 66.6 17.3 27 213-239 918-944 (1080)
38 3na7_A HP0958; flagellar bioge 96.0 0.46 1.6E-05 50.2 20.0 8 353-360 179-186 (256)
39 1i84_S Smooth muscle myosin he 95.9 0.015 5.1E-07 73.8 9.8 18 218-235 859-876 (1184)
40 4gkp_A Spindle POLE BODY-assoc 95.9 0.06 2.1E-06 57.9 12.7 251 353-649 3-272 (275)
41 3na7_A HP0958; flagellar bioge 95.8 0.97 3.3E-05 47.8 21.6 43 267-309 92-134 (256)
42 3vkg_A Dynein heavy chain, cyt 95.5 0.44 1.5E-05 65.9 21.7 73 204-276 1912-1987(3245)
43 2dfs_A Myosin-5A; myosin-V, in 95.5 0.16 5.4E-06 64.1 16.2 14 349-362 1063-1076(1080)
44 3oja_B Anopheles plasmodium-re 95.4 0.056 1.9E-06 62.7 11.0 73 285-357 508-580 (597)
45 3oja_B Anopheles plasmodium-re 95.3 0.12 4.1E-06 59.9 13.7 56 287-342 524-579 (597)
46 3vkg_A Dynein heavy chain, cyt 94.6 1.3 4.5E-05 61.4 22.2 25 615-642 2643-2667(3245)
47 3ec2_A DNA replication protein 93.5 0.011 3.8E-07 57.7 -0.6 50 408-457 6-55 (180)
48 2v71_A Nuclear distribution pr 92.8 6.5 0.00022 40.3 18.5 77 224-303 50-126 (189)
49 3o0z_A RHO-associated protein 92.8 4.6 0.00016 40.6 17.0 14 219-232 9-22 (168)
50 4b4t_K 26S protease regulatory 92.4 0.35 1.2E-05 55.1 9.6 74 409-482 169-265 (428)
51 2w58_A DNAI, primosome compone 92.3 0.026 8.8E-07 55.9 0.2 51 407-457 20-71 (202)
52 3o0z_A RHO-associated protein 91.2 14 0.00046 37.3 22.4 58 240-300 47-104 (168)
53 2v66_B Nuclear distribution pr 90.2 11 0.00039 35.5 15.6 31 210-240 4-34 (111)
54 2qgz_A Helicase loader, putati 89.7 0.069 2.4E-06 57.7 0.3 51 408-458 120-170 (308)
55 2ocy_A RAB guanine nucleotide 87.7 24 0.0008 35.1 18.9 29 335-363 115-143 (154)
56 4b4t_J 26S protease regulatory 86.5 1.3 4.5E-05 50.1 8.1 75 409-483 145-242 (405)
57 2fxo_A Myosin heavy chain, car 86.2 24 0.00081 33.6 17.0 13 224-236 14-26 (129)
58 2fxo_A Myosin heavy chain, car 85.5 26 0.00088 33.4 17.3 39 208-246 12-50 (129)
59 2v66_B Nuclear distribution pr 83.4 30 0.001 32.6 17.1 35 267-301 37-71 (111)
60 2p65_A Hypothetical protein PF 83.4 0.3 1E-05 46.3 0.9 28 430-457 33-60 (187)
61 3u1c_A Tropomyosin alpha-1 cha 83.0 28 0.00097 31.9 14.5 26 212-237 5-30 (101)
62 3ghg_A Fibrinogen alpha chain; 82.9 9.9 0.00034 44.2 13.0 8 219-226 67-74 (562)
63 4b4t_M 26S protease regulatory 82.6 3.2 0.00011 47.3 9.1 75 408-482 177-274 (434)
64 3ol1_A Vimentin; structural ge 82.4 20 0.00067 33.9 13.0 18 224-241 21-38 (119)
65 2bjv_A PSP operon transcriptio 82.4 0.36 1.2E-05 49.8 1.1 45 408-457 2-46 (265)
66 3uk6_A RUVB-like 2; hexameric 82.1 0.41 1.4E-05 51.5 1.4 46 408-457 40-87 (368)
67 4gkw_A Spindle assembly abnorm 81.4 40 0.0014 32.6 18.9 33 286-318 98-130 (167)
68 3bos_A Putative DNA replicatio 80.9 0.41 1.4E-05 47.5 0.8 44 409-457 25-69 (242)
69 3hnw_A Uncharacterized protein 80.4 13 0.00043 36.2 11.1 60 658-717 68-127 (138)
70 1jbk_A CLPB protein; beta barr 79.6 0.67 2.3E-05 43.7 1.8 28 430-457 33-60 (195)
71 3hnw_A Uncharacterized protein 79.0 9.9 0.00034 37.0 9.8 59 181-239 27-98 (138)
72 1deq_A Fibrinogen (alpha chain 78.7 24 0.00081 39.6 13.8 84 208-294 66-149 (390)
73 3oja_A Leucine-rich immune mol 78.3 91 0.0031 35.1 19.2 47 301-347 429-475 (487)
74 3nmd_A CGMP dependent protein 78.3 5.4 0.00018 35.0 6.8 46 667-712 21-66 (72)
75 3oja_A Leucine-rich immune mol 78.3 30 0.001 39.1 15.2 34 290-323 432-465 (487)
76 3u59_A Tropomyosin beta chain; 78.2 41 0.0014 30.7 14.0 23 214-236 7-29 (101)
77 3swk_A Vimentin; cytoskeleton, 78.0 19 0.00064 32.3 10.6 76 226-301 3-78 (86)
78 3h4m_A Proteasome-activating n 76.8 0.59 2E-05 48.5 0.5 50 408-457 13-68 (285)
79 1l8q_A Chromosomal replication 76.2 0.69 2.3E-05 49.3 0.8 48 408-457 7-54 (324)
80 2v1u_A Cell division control p 76.0 0.55 1.9E-05 50.2 0.0 37 421-457 24-61 (387)
81 2kjq_A DNAA-related protein; s 75.7 0.71 2.4E-05 44.5 0.7 17 441-457 37-53 (149)
82 1d2n_A N-ethylmaleimide-sensit 75.2 0.71 2.4E-05 47.9 0.6 21 437-457 61-81 (272)
83 1g8p_A Magnesium-chelatase 38 75.1 0.83 2.8E-05 48.6 1.1 44 407-457 19-62 (350)
84 1qde_A EIF4A, translation init 74.6 1.1 3.9E-05 44.5 1.9 25 430-456 43-67 (224)
85 3t15_A Ribulose bisphosphate c 74.5 0.76 2.6E-05 48.9 0.7 17 441-457 37-53 (293)
86 1vec_A ATP-dependent RNA helic 74.4 1.2 4E-05 43.7 1.9 26 430-457 32-57 (206)
87 2c9o_A RUVB-like 1; hexameric 74.3 1.1 3.7E-05 50.7 1.9 46 408-457 33-80 (456)
88 2gxq_A Heat resistant RNA depe 73.8 1.2 4E-05 43.6 1.8 26 430-457 30-55 (207)
89 3te6_A Regulatory protein SIR3 73.1 0.89 3.1E-05 49.8 0.8 30 428-457 32-62 (318)
90 3l4q_C Phosphatidylinositol 3- 73.0 82 0.0028 31.7 18.0 104 225-328 12-138 (170)
91 1lv7_A FTSH; alpha/beta domain 73.0 1.2 4E-05 45.7 1.6 46 408-457 8-62 (257)
92 2r62_A Cell division protease 72.9 0.68 2.3E-05 47.7 -0.2 50 408-457 7-61 (268)
93 3bor_A Human initiation factor 72.6 0.96 3.3E-05 46.0 0.8 26 430-457 59-84 (237)
94 2jee_A YIIU; FTSZ, septum, coi 72.3 42 0.0014 30.0 11.1 37 210-246 7-43 (81)
95 1x79_B RAB GTPase binding effe 71.2 65 0.0022 30.4 12.7 35 293-327 38-72 (112)
96 1ixz_A ATP-dependent metallopr 70.6 0.82 2.8E-05 46.8 -0.2 15 443-457 52-66 (254)
97 2no2_A HIP-I, huntingtin-inter 70.3 55 0.0019 30.5 12.1 16 213-228 5-20 (107)
98 2z4s_A Chromosomal replication 70.0 1.1 3.8E-05 50.6 0.7 48 407-457 100-147 (440)
99 3b6e_A Interferon-induced heli 69.8 1.1 3.8E-05 43.8 0.5 26 430-457 40-65 (216)
100 1fnn_A CDC6P, cell division co 69.6 1.2 4.2E-05 47.7 0.9 37 421-457 22-61 (389)
101 3iox_A AGI/II, PA; alpha helix 69.5 71 0.0024 37.0 15.1 39 222-260 8-46 (497)
102 3dkp_A Probable ATP-dependent 69.0 1.8 6.1E-05 43.9 1.9 26 430-457 58-83 (245)
103 2pl3_A Probable ATP-dependent 68.9 1.6 5.6E-05 43.9 1.6 26 430-457 54-79 (236)
104 3cf0_A Transitional endoplasmi 68.0 0.98 3.3E-05 48.0 -0.3 50 408-457 11-66 (301)
105 3ol1_A Vimentin; structural ge 67.8 76 0.0026 29.8 12.7 71 268-338 23-100 (119)
106 1t6n_A Probable ATP-dependent 67.6 1.8 6.3E-05 42.9 1.6 26 430-457 43-68 (220)
107 4b4t_L 26S protease subunit RP 67.5 6 0.00021 45.2 6.0 73 409-481 178-273 (437)
108 3tnu_B Keratin, type II cytosk 66.8 58 0.002 30.9 11.8 19 319-337 87-105 (129)
109 2qz4_A Paraplegin; AAA+, SPG7, 66.5 2.2 7.6E-05 43.2 2.0 19 439-457 38-56 (262)
110 3syl_A Protein CBBX; photosynt 66.3 1.9 6.4E-05 45.1 1.4 20 438-457 65-84 (309)
111 3iuy_A Probable ATP-dependent 66.0 2.2 7.6E-05 42.7 1.9 26 430-457 49-74 (228)
112 2e7s_A RAB guanine nucleotide 65.9 27 0.00093 34.0 9.2 27 338-364 106-132 (135)
113 1wrb_A DJVLGB; RNA helicase, D 65.7 2.2 7.5E-05 43.5 1.8 26 430-457 52-77 (253)
114 3u59_A Tropomyosin beta chain; 64.2 85 0.0029 28.5 14.6 19 284-302 42-60 (101)
115 3a7p_A Autophagy protein 16; c 64.2 46 0.0016 33.0 10.6 42 212-253 64-105 (152)
116 3ghg_A Fibrinogen alpha chain; 63.8 58 0.002 38.0 12.8 37 290-326 114-150 (562)
117 2chg_A Replication factor C sm 63.7 2.4 8.2E-05 40.9 1.5 21 437-457 35-55 (226)
118 1p9r_A General secretion pathw 63.6 2.8 9.7E-05 47.4 2.3 28 430-457 157-184 (418)
119 3tnu_A Keratin, type I cytoske 63.2 51 0.0018 31.3 10.7 23 316-338 86-108 (131)
120 3eiq_A Eukaryotic initiation f 63.2 2.7 9.3E-05 45.3 2.0 26 430-457 69-94 (414)
121 3fmo_B ATP-dependent RNA helic 63.2 2.5 8.6E-05 45.0 1.7 28 430-457 121-148 (300)
122 3ly5_A ATP-dependent RNA helic 63.1 1.9 6.6E-05 44.7 0.8 26 430-457 83-108 (262)
123 2oxc_A Probable ATP-dependent 63.0 2.6 9.1E-05 42.4 1.8 25 430-456 53-77 (230)
124 1iy2_A ATP-dependent metallopr 62.4 1.5 5E-05 45.8 -0.3 16 442-457 75-90 (278)
125 3u1c_A Tropomyosin alpha-1 cha 62.1 95 0.0033 28.4 14.6 18 284-301 42-59 (101)
126 3llm_A ATP-dependent RNA helic 61.9 2.8 9.7E-05 42.6 1.8 26 430-457 68-93 (235)
127 3jvv_A Twitching mobility prot 61.9 2.8 9.6E-05 46.4 1.9 28 430-457 113-140 (356)
128 4fla_A Regulation of nuclear P 61.8 1.3E+02 0.0043 29.7 14.2 47 315-361 101-147 (152)
129 2qby_B CDC6 homolog 3, cell di 61.3 2 6.9E-05 46.1 0.6 37 421-457 25-62 (384)
130 3ber_A Probable ATP-dependent 61.1 3 0.0001 43.0 1.8 26 430-457 72-97 (249)
131 3fe2_A Probable ATP-dependent 61.0 2.9 9.8E-05 42.5 1.6 26 430-457 58-83 (242)
132 2qby_A CDC6 homolog 1, cell di 60.8 1.6 5.5E-05 46.4 -0.3 20 438-457 43-62 (386)
133 1ic2_A Tropomyosin alpha chain 60.7 84 0.0029 27.5 10.8 56 663-718 4-59 (81)
134 1q0u_A Bstdead; DEAD protein, 60.5 2.1 7.1E-05 42.7 0.5 26 430-457 33-58 (219)
135 3co5_A Putative two-component 60.3 2.6 9E-05 39.7 1.1 33 426-459 14-46 (143)
136 2zqm_A Prefoldin beta subunit 60.2 76 0.0026 28.8 11.0 32 207-238 4-35 (117)
137 3mq9_A Bone marrow stromal ant 60.0 1.1E+02 0.0039 34.1 14.7 6 173-178 278-283 (471)
138 3b9p_A CG5977-PA, isoform A; A 59.8 1.6 5.5E-05 45.5 -0.5 50 408-457 17-71 (297)
139 1sxj_C Activator 1 40 kDa subu 59.6 2.3 7.8E-05 45.7 0.6 22 436-457 42-63 (340)
140 1w5s_A Origin recognition comp 59.4 3.5 0.00012 44.6 2.1 28 430-457 36-69 (412)
141 3d8b_A Fidgetin-like protein 1 59.4 1.3 4.6E-05 48.3 -1.3 20 438-457 115-134 (357)
142 1deq_A Fibrinogen (alpha chain 59.3 1.2E+02 0.0041 34.1 14.0 14 287-300 114-127 (390)
143 3i00_A HIP-I, huntingtin-inter 59.0 42 0.0014 32.0 9.1 31 216-246 15-45 (120)
144 3pfi_A Holliday junction ATP-d 58.6 2.8 9.6E-05 44.5 1.1 44 410-457 27-72 (338)
145 3pvs_A Replication-associated 58.4 3.6 0.00012 46.8 2.0 44 410-457 24-67 (447)
146 3swk_A Vimentin; cytoskeleton, 58.0 24 0.00082 31.6 6.9 34 330-363 23-56 (86)
147 3fmp_B ATP-dependent RNA helic 57.8 3.9 0.00013 45.8 2.1 27 430-456 121-147 (479)
148 2j0s_A ATP-dependent RNA helic 57.7 3.6 0.00012 44.5 1.8 26 430-457 66-91 (410)
149 2v4h_A NF-kappa-B essential mo 57.4 1.1E+02 0.0036 28.9 11.2 18 217-234 25-42 (110)
150 2jee_A YIIU; FTSZ, septum, coi 56.7 1.1E+02 0.0038 27.4 12.0 6 295-300 29-34 (81)
151 3s84_A Apolipoprotein A-IV; fo 56.7 2.1E+02 0.0071 30.6 16.2 156 207-365 20-185 (273)
152 1quu_A Human skeletal muscle a 56.3 1.8E+02 0.006 29.6 16.9 50 209-258 48-111 (250)
153 3tnu_B Keratin, type II cytosk 55.4 1.4E+02 0.0048 28.2 14.0 61 656-719 34-94 (129)
154 3fht_A ATP-dependent RNA helic 55.1 4.2 0.00014 43.7 1.7 28 430-457 54-81 (412)
155 1hqc_A RUVB; extended AAA-ATPa 54.9 3.9 0.00013 42.9 1.4 44 410-457 10-55 (324)
156 1xwi_A SKD1 protein; VPS4B, AA 54.8 2 6.7E-05 46.4 -0.9 49 409-457 9-62 (322)
157 3pey_A ATP-dependent RNA helic 54.7 3.9 0.00013 43.4 1.4 28 430-457 34-61 (395)
158 4fcw_A Chaperone protein CLPB; 54.7 4 0.00014 42.6 1.4 17 441-457 48-64 (311)
159 2eqb_B RAB guanine nucleotide 54.6 1.3E+02 0.0046 27.7 12.6 11 350-360 84-94 (97)
160 2eyu_A Twitching motility prot 54.3 5 0.00017 42.2 2.1 19 439-457 24-42 (261)
161 2efr_A General control protein 54.2 1.7E+02 0.0059 28.9 22.8 20 281-300 72-91 (155)
162 1s2m_A Putative ATP-dependent 52.9 4 0.00014 43.9 1.1 26 430-457 50-75 (400)
163 2z0m_A 337AA long hypothetical 52.7 4.9 0.00017 41.7 1.8 27 430-458 23-49 (337)
164 2i4i_A ATP-dependent RNA helic 52.3 5 0.00017 43.3 1.8 25 431-457 45-69 (417)
165 1njg_A DNA polymerase III subu 52.3 4.4 0.00015 39.3 1.2 17 441-457 46-62 (250)
166 3oiy_A Reverse gyrase helicase 52.1 4.4 0.00015 44.2 1.3 26 430-457 28-53 (414)
167 1tue_A Replication protein E1; 51.5 4.5 0.00016 42.1 1.2 27 431-457 47-75 (212)
168 3vfd_A Spastin; ATPase, microt 50.7 2.7 9.4E-05 46.1 -0.6 18 440-457 148-165 (389)
169 3n70_A Transport activator; si 50.5 4.3 0.00015 38.2 0.8 20 438-457 22-41 (145)
170 2fz4_A DNA repair protein RAD2 50.3 5.1 0.00017 41.2 1.4 27 430-458 100-126 (237)
171 1iqp_A RFCS; clamp loader, ext 50.0 5.8 0.0002 41.3 1.8 21 437-457 43-63 (327)
172 1ofh_A ATP-dependent HSL prote 50.0 4.1 0.00014 42.2 0.6 18 440-457 50-67 (310)
173 2ewv_A Twitching motility prot 49.6 5.8 0.0002 43.9 1.8 27 431-457 127-153 (372)
174 3q8t_A Beclin-1; autophagy, AT 48.3 1.6E+02 0.0055 26.8 13.8 39 208-246 3-41 (96)
175 1rif_A DAR protein, DNA helica 48.1 4.4 0.00015 42.2 0.5 27 430-458 120-146 (282)
176 3lay_A Zinc resistance-associa 47.9 62 0.0021 32.6 8.8 66 655-720 68-133 (175)
177 3u61_B DNA polymerase accessor 47.9 6.1 0.00021 41.7 1.5 18 440-457 48-65 (324)
178 3mq9_A Bone marrow stromal ant 47.6 1.9E+02 0.0067 32.2 13.9 22 290-311 401-422 (471)
179 3h1t_A Type I site-specific re 47.5 5.9 0.0002 45.7 1.5 24 434-458 193-216 (590)
180 3haj_A Human pacsin2 F-BAR; pa 47.4 3.6E+02 0.012 30.6 16.5 34 213-246 133-166 (486)
181 2db3_A ATP-dependent RNA helic 46.9 6.4 0.00022 43.8 1.6 26 430-457 85-110 (434)
182 3fho_A ATP-dependent RNA helic 46.9 7 0.00024 44.6 1.9 27 431-457 149-175 (508)
183 1xti_A Probable ATP-dependent 46.8 6.9 0.00024 41.7 1.8 26 430-457 37-62 (391)
184 1sxj_D Activator 1 41 kDa subu 46.0 8.6 0.00029 40.6 2.4 27 431-457 49-75 (353)
185 1f5n_A Interferon-induced guan 45.9 4.4E+02 0.015 31.1 18.6 16 349-364 567-582 (592)
186 1fuu_A Yeast initiation factor 45.1 5 0.00017 42.7 0.4 26 430-457 50-75 (394)
187 2oap_1 GSPE-2, type II secreti 45.0 6.7 0.00023 45.5 1.4 21 435-457 257-277 (511)
188 1fxk_A Prefoldin; archaeal pro 45.0 1E+02 0.0034 27.6 9.0 27 211-237 3-29 (107)
189 3iox_A AGI/II, PA; alpha helix 44.6 3.4E+02 0.012 31.5 15.1 34 221-254 14-47 (497)
190 4gkw_A Spindle assembly abnorm 44.5 2.3E+02 0.0078 27.5 19.0 18 211-228 13-30 (167)
191 3eie_A Vacuolar protein sortin 44.5 6 0.0002 42.3 0.8 17 441-457 52-68 (322)
192 3i5x_A ATP-dependent RNA helic 44.4 9.1 0.00031 43.6 2.4 27 430-456 101-127 (563)
193 2efk_A CDC42-interacting prote 44.3 2.9E+02 0.0099 28.6 19.3 26 284-309 170-195 (301)
194 3q8t_A Beclin-1; autophagy, AT 44.2 1.8E+02 0.0063 26.3 13.9 26 276-301 29-54 (96)
195 1u0j_A DNA replication protein 43.9 8.4 0.00029 41.3 1.9 28 430-457 91-121 (267)
196 2jlq_A Serine protease subunit 43.6 7.3 0.00025 43.8 1.4 25 432-457 12-36 (451)
197 4h22_A Leucine-rich repeat fli 43.5 1.3E+02 0.0043 28.1 9.3 44 213-256 27-70 (103)
198 3bas_A Myosin heavy chain, str 43.5 1.8E+02 0.0061 25.9 11.0 32 208-239 13-44 (89)
199 3iv1_A Tumor susceptibility ge 43.4 1.7E+02 0.0058 26.0 9.7 57 239-298 16-72 (78)
200 4a2p_A RIG-I, retinoic acid in 43.3 8.6 0.00029 43.1 1.9 26 430-457 14-39 (556)
201 1ojl_A Transcriptional regulat 43.2 7 0.00024 41.8 1.1 30 427-457 13-42 (304)
202 1m1j_B Fibrinogen beta chain; 43.1 4.3E+02 0.015 30.4 15.8 28 205-235 85-112 (464)
203 3bas_A Myosin heavy chain, str 43.1 1.8E+02 0.0062 25.9 12.2 25 316-340 58-82 (89)
204 1sxj_E Activator 1 40 kDa subu 43.1 4.2 0.00014 43.3 -0.7 15 443-457 39-53 (354)
205 3hhm_B NISH2 P85alpha; PI3KCA, 43.0 3.9E+02 0.013 29.7 16.5 37 279-315 198-234 (373)
206 3a7p_A Autophagy protein 16; c 42.8 2.6E+02 0.009 27.7 12.1 16 282-297 78-93 (152)
207 2chq_A Replication factor C sm 42.6 4.1 0.00014 42.3 -0.8 21 437-457 35-55 (319)
208 1jr3_A DNA polymerase III subu 42.3 8.9 0.00031 40.8 1.8 18 440-457 38-55 (373)
209 1ik9_A DNA repair protein XRCC 41.8 1.1E+02 0.0038 31.6 9.8 15 629-643 118-133 (213)
210 2i1j_A Moesin; FERM, coiled-co 41.7 25 0.00084 41.5 5.5 6 154-159 253-258 (575)
211 1m1j_C Fibrinogen gamma chain; 41.5 1.6E+02 0.0056 33.3 11.9 43 205-247 23-65 (409)
212 4etp_A Kinesin-like protein KA 41.4 54 0.0018 36.9 8.0 40 683-722 7-46 (403)
213 1ic2_A Tropomyosin alpha chain 41.1 1.8E+02 0.0062 25.3 11.3 20 282-301 16-35 (81)
214 2dhr_A FTSH; AAA+ protein, hex 40.9 8.2 0.00028 44.7 1.3 46 408-457 27-81 (499)
215 3tbk_A RIG-I helicase domain; 40.9 9.9 0.00034 42.5 1.9 26 430-457 11-36 (555)
216 2v1x_A ATP-dependent DNA helic 40.8 13 0.00044 43.7 2.9 26 430-457 51-76 (591)
217 1hv8_A Putative ATP-dependent 40.7 8.7 0.0003 40.3 1.4 26 431-457 36-61 (367)
218 1qvr_A CLPB protein; coiled co 40.7 5.4 0.00018 48.7 -0.3 43 410-459 168-210 (854)
219 3vp9_A General transcriptional 40.6 40 0.0014 30.8 5.4 31 325-355 54-85 (92)
220 3iv1_A Tumor susceptibility ge 40.0 1.6E+02 0.0056 26.1 9.1 28 686-713 46-73 (78)
221 2ce7_A Cell division protein F 39.9 10 0.00034 43.7 1.8 46 408-457 12-66 (476)
222 4gl2_A Interferon-induced heli 39.7 9.4 0.00032 44.7 1.6 26 430-457 14-39 (699)
223 1gvn_B Zeta; postsegregational 39.3 12 0.0004 39.8 2.1 28 430-457 18-50 (287)
224 1in4_A RUVB, holliday junction 39.3 7.5 0.00026 41.9 0.6 44 410-457 23-68 (334)
225 3hu3_A Transitional endoplasmi 39.2 6.5 0.00022 45.3 0.1 20 438-457 236-255 (489)
226 2b9c_A Striated-muscle alpha t 38.8 1.8E+02 0.0063 28.4 10.3 6 356-361 136-141 (147)
227 1w36_D RECD, exodeoxyribonucle 38.6 8.1 0.00028 45.5 0.8 26 431-458 157-182 (608)
228 1n0w_A DNA repair protein RAD5 38.3 12 0.00042 37.1 2.0 28 430-457 11-41 (243)
229 3cvf_A Homer-3, homer protein 38.2 1.1E+02 0.0038 27.2 7.7 9 231-239 14-22 (79)
230 3pxi_A Negative regulator of g 38.1 11 0.00037 45.3 1.8 37 421-457 496-538 (758)
231 1go4_E MAD1 (mitotic arrest de 38.1 1.5E+02 0.0051 27.5 8.9 35 207-241 10-44 (100)
232 2e7s_A RAB guanine nucleotide 37.9 1.4E+02 0.0047 29.1 9.0 20 207-226 6-25 (135)
233 2yy0_A C-MYC-binding protein; 37.4 50 0.0017 27.1 5.1 31 208-238 18-48 (53)
234 2fwr_A DNA repair protein RAD2 37.1 12 0.0004 41.7 1.7 26 430-457 100-125 (472)
235 4ag6_A VIRB4 ATPase, type IV s 36.7 8.3 0.00028 42.3 0.4 19 437-457 34-52 (392)
236 2v4h_A NF-kappa-B essential mo 36.4 2.8E+02 0.0095 26.1 12.9 30 659-688 25-54 (110)
237 4gp7_A Metallophosphoesterase; 36.3 9.7 0.00033 36.8 0.8 17 442-458 11-27 (171)
238 1f5n_A Interferon-induced guan 36.0 6.1E+02 0.021 29.9 17.2 6 113-118 184-189 (592)
239 1um8_A ATP-dependent CLP prote 36.0 9.4 0.00032 41.5 0.7 18 440-457 72-89 (376)
240 3a7o_A Autophagy protein 16; c 35.9 2.1E+02 0.0071 25.0 8.7 25 665-689 18-42 (75)
241 4b3f_X DNA-binding protein smu 35.8 12 0.00039 44.3 1.5 27 431-458 197-223 (646)
242 2r44_A Uncharacterized protein 35.7 7.2 0.00025 41.4 -0.2 23 433-457 41-63 (331)
243 2x8a_A Nuclear valosin-contain 35.5 9.4 0.00032 40.2 0.6 49 409-457 7-61 (274)
244 1wp9_A ATP-dependent RNA helic 35.4 12 0.0004 40.4 1.4 26 430-458 16-41 (494)
245 1cii_A Colicin IA; bacteriocin 35.4 5.8E+02 0.02 29.5 16.4 48 210-257 350-397 (602)
246 2w0m_A SSO2452; RECA, SSPF, un 35.4 15 0.00051 36.0 2.0 28 430-457 10-40 (235)
247 3qh9_A Liprin-beta-2; coiled-c 35.3 2.4E+02 0.0083 25.2 9.4 24 216-239 19-42 (81)
248 3sqw_A ATP-dependent RNA helic 35.3 15 0.00052 42.3 2.4 28 430-457 50-77 (579)
249 2ykg_A Probable ATP-dependent 35.2 13 0.00046 43.4 1.9 26 430-457 20-45 (696)
250 1r6b_X CLPA protein; AAA+, N-t 35.2 14 0.00047 44.3 2.0 37 421-457 463-505 (758)
251 3lw7_A Adenylate kinase relate 35.0 11 0.00039 34.9 1.0 16 442-457 3-18 (179)
252 1qvr_A CLPB protein; coiled co 34.9 13 0.00044 45.4 1.8 37 421-457 563-605 (854)
253 1m1j_A Fibrinogen alpha subuni 34.7 5.9E+02 0.02 29.4 15.4 16 204-219 49-64 (491)
254 2gza_A Type IV secretion syste 34.5 11 0.00039 41.3 1.1 21 435-457 172-192 (361)
255 1e9r_A Conjugal transfer prote 34.3 8.3 0.00028 42.8 -0.1 18 440-457 53-70 (437)
256 2qp9_X Vacuolar protein sortin 34.2 10 0.00034 41.4 0.6 17 441-457 85-101 (355)
257 3tr0_A Guanylate kinase, GMP k 33.8 11 0.00038 36.6 0.8 16 442-457 9-24 (205)
258 2cvh_A DNA repair and recombin 33.7 16 0.00056 35.6 2.0 28 430-457 7-37 (220)
259 4b4t_H 26S protease regulatory 33.6 21 0.00071 41.2 3.0 75 409-483 206-303 (467)
260 2b5u_A Colicin E3; high resolu 33.5 6.4E+02 0.022 29.4 20.2 29 49-77 165-194 (551)
261 1m1j_C Fibrinogen gamma chain; 33.4 4.6E+02 0.016 29.7 13.9 12 467-478 226-237 (409)
262 3hws_A ATP-dependent CLP prote 33.4 11 0.00038 40.8 0.7 17 441-457 52-68 (363)
263 2r8r_A Sensor protein; KDPD, P 33.4 11 0.00037 39.6 0.6 20 440-459 6-25 (228)
264 3uun_A Dystrophin; triple heli 33.3 2.5E+02 0.0084 24.6 12.0 35 325-362 82-116 (119)
265 3pxg_A Negative regulator of g 33.2 14 0.00049 41.8 1.7 30 430-459 191-220 (468)
266 2yy0_A C-MYC-binding protein; 33.2 70 0.0024 26.2 5.3 29 216-244 19-47 (53)
267 2qag_C Septin-7; cell cycle, c 33.2 12 0.00041 42.3 1.0 23 435-457 26-48 (418)
268 1sjj_A Actinin; 3-helix bundle 33.0 7.1E+02 0.024 29.9 19.3 148 209-359 404-599 (863)
269 4b4t_I 26S protease regulatory 33.0 23 0.00078 40.6 3.2 44 440-483 216-276 (437)
270 4emc_A Monopolin complex subun 32.7 1.1E+02 0.0036 31.5 7.6 47 671-717 12-58 (190)
271 1c4o_A DNA nucleotide excision 32.6 14 0.00047 44.1 1.4 46 409-459 2-47 (664)
272 3nmd_A CGMP dependent protein 32.6 1E+02 0.0035 27.0 6.5 29 688-716 21-49 (72)
273 3qh9_A Liprin-beta-2; coiled-c 32.4 2.7E+02 0.0093 24.9 10.4 18 284-301 24-41 (81)
274 2eqb_B RAB guanine nucleotide 32.3 3E+02 0.01 25.3 12.8 57 660-716 7-63 (97)
275 1sxj_A Activator 1 95 kDa subu 32.2 8.8 0.0003 44.1 -0.3 17 441-457 78-94 (516)
276 2efk_A CDC42-interacting prote 32.2 4.4E+02 0.015 27.2 18.1 12 311-322 187-198 (301)
277 3b85_A Phosphate starvation-in 32.1 17 0.0006 36.8 1.9 25 431-457 15-39 (208)
278 1sxj_B Activator 1 37 kDa subu 31.9 16 0.00054 37.9 1.6 22 436-457 38-59 (323)
279 3cve_A Homer protein homolog 1 31.8 2.6E+02 0.0089 24.4 9.6 10 230-239 7-16 (72)
280 2oqq_A Transcription factor HY 31.5 1.4E+02 0.0048 23.6 6.3 34 689-722 6-39 (42)
281 2zan_A Vacuolar protein sortin 31.3 13 0.00044 42.0 0.8 17 441-457 168-184 (444)
282 3tau_A Guanylate kinase, GMP k 31.3 13 0.00045 37.0 0.8 16 442-457 10-25 (208)
283 1m1j_B Fibrinogen beta chain; 31.1 6.6E+02 0.023 28.9 16.6 16 214-229 98-113 (464)
284 2qnr_A Septin-2, protein NEDD5 30.8 12 0.00042 39.9 0.5 24 434-457 12-35 (301)
285 1oyw_A RECQ helicase, ATP-depe 30.7 14 0.00049 42.4 1.1 26 430-457 32-57 (523)
286 1kgd_A CASK, peripheral plasma 30.5 14 0.00047 35.9 0.8 16 442-457 7-22 (180)
287 2yhs_A FTSY, cell division pro 30.4 14 0.00048 43.0 1.0 16 442-457 295-310 (503)
288 3cve_A Homer protein homolog 1 29.9 2.2E+02 0.0074 24.9 8.1 16 224-239 15-30 (72)
289 2gk6_A Regulator of nonsense t 29.8 17 0.00058 42.8 1.6 26 431-458 188-213 (624)
290 3hhm_B NISH2 P85alpha; PI3KCA, 29.7 6.2E+02 0.021 28.1 15.0 31 213-243 130-160 (373)
291 4a74_A DNA repair and recombin 29.7 21 0.0007 35.1 1.9 28 430-457 12-42 (231)
292 1lwu_C Fibrinogen gamma chain; 29.5 91 0.0031 34.3 7.1 12 699-710 25-36 (323)
293 4a2q_A RIG-I, retinoic acid in 29.3 18 0.0006 43.7 1.6 26 430-457 255-280 (797)
294 3efg_A Protein SLYX homolog; x 29.0 1.2E+02 0.004 26.7 6.4 38 678-715 20-57 (78)
295 4a2w_A RIG-I, retinoic acid in 28.9 18 0.00061 44.8 1.6 27 430-458 255-281 (936)
296 3i00_A HIP-I, huntingtin-inter 28.9 2.9E+02 0.0099 26.2 9.6 18 211-228 17-34 (120)
297 3b9q_A Chloroplast SRP recepto 28.9 15 0.00051 39.5 0.8 16 442-457 102-117 (302)
298 3a00_A Guanylate kinase, GMP k 28.9 14 0.00047 36.0 0.5 15 443-457 4-18 (186)
299 1s35_A Beta-I spectrin, spectr 28.8 4.1E+02 0.014 25.8 18.0 16 240-255 79-94 (214)
300 3sop_A Neuronal-specific septi 28.8 15 0.0005 38.8 0.7 19 439-457 1-19 (270)
301 2lw1_A ABC transporter ATP-bin 28.8 1.8E+02 0.0062 25.7 7.8 51 673-723 23-79 (89)
302 1ly1_A Polynucleotide kinase; 28.7 17 0.00057 34.3 1.0 17 441-457 3-19 (181)
303 3e70_C DPA, signal recognition 28.7 24 0.00081 38.5 2.4 18 440-457 129-146 (328)
304 3mq7_A Bone marrow stromal ant 28.7 3.6E+02 0.012 25.6 9.9 14 286-299 53-66 (121)
305 2dr3_A UPF0273 protein PH0284; 28.6 18 0.0006 36.0 1.2 28 430-457 10-40 (247)
306 1ye8_A Protein THEP1, hypothet 28.6 16 0.00053 36.1 0.8 15 443-457 3-17 (178)
307 1zp6_A Hypothetical protein AT 28.5 14 0.00048 35.5 0.4 17 441-457 10-26 (191)
308 2ehv_A Hypothetical protein PH 28.4 16 0.00053 36.5 0.8 17 442-458 32-48 (251)
309 3cvf_A Homer-3, homer protein 28.3 2.3E+02 0.008 25.1 8.2 8 228-235 25-32 (79)
310 3trf_A Shikimate kinase, SK; a 28.3 17 0.00059 34.8 1.0 16 442-457 7-22 (185)
311 2v6i_A RNA helicase; membrane, 28.0 20 0.00067 40.1 1.6 16 442-457 4-19 (431)
312 1d7m_A Cortexillin I; coiled-c 28.0 3.5E+02 0.012 24.7 12.6 11 253-263 6-16 (101)
313 4egx_A Kinesin-like protein KI 27.8 1.5E+02 0.0052 29.8 7.9 19 768-786 66-84 (184)
314 2j41_A Guanylate kinase; GMP, 27.8 16 0.00056 35.4 0.8 16 442-457 8-23 (207)
315 4a4z_A Antiviral helicase SKI2 27.8 22 0.00075 44.5 2.1 25 430-456 46-70 (997)
316 1r6b_X CLPA protein; AAA+, N-t 27.6 18 0.00063 43.1 1.4 29 430-458 197-225 (758)
317 1lvg_A Guanylate kinase, GMP k 27.5 15 0.0005 36.5 0.4 16 442-457 6-21 (198)
318 1rj9_A FTSY, signal recognitio 27.3 18 0.00062 38.9 1.1 16 442-457 104-119 (304)
319 3htk_A Structural maintenance 27.3 2.3E+02 0.0079 22.9 7.6 22 227-248 9-30 (60)
320 2oca_A DAR protein, ATP-depend 27.2 15 0.00051 41.3 0.5 27 430-458 120-146 (510)
321 2px0_A Flagellar biosynthesis 27.1 15 0.00052 39.3 0.4 16 442-457 107-122 (296)
322 2b8t_A Thymidine kinase; deoxy 27.1 16 0.00054 37.9 0.6 19 441-459 13-31 (223)
323 2bdt_A BH3686; alpha-beta prot 27.0 17 0.00059 35.0 0.8 16 442-457 4-19 (189)
324 3lnc_A Guanylate kinase, GMP k 26.9 20 0.00067 36.0 1.2 15 443-457 30-44 (231)
325 2lw1_A ABC transporter ATP-bin 26.6 3.3E+02 0.011 24.0 9.2 26 214-239 20-45 (89)
326 1rz3_A Hypothetical protein rb 26.5 17 0.00056 36.0 0.6 18 440-457 22-39 (201)
327 3lfu_A DNA helicase II; SF1 he 26.5 17 0.00059 42.1 0.8 20 439-458 21-40 (647)
328 1cii_A Colicin IA; bacteriocin 26.5 8.1E+02 0.028 28.4 17.4 10 69-78 270-279 (602)
329 1qhx_A CPT, protein (chloramph 26.4 19 0.00066 34.1 1.0 17 441-457 4-20 (178)
330 3upu_A ATP-dependent DNA helic 26.4 25 0.00085 39.6 2.1 36 418-457 27-62 (459)
331 2z83_A Helicase/nucleoside tri 26.1 23 0.0008 39.8 1.8 16 442-457 23-38 (459)
332 3haj_A Human pacsin2 F-BAR; pa 25.9 7.6E+02 0.026 27.9 18.4 25 283-307 189-213 (486)
333 1yks_A Genome polyprotein [con 25.9 22 0.00075 39.9 1.5 21 435-457 5-25 (440)
334 1znw_A Guanylate kinase, GMP k 25.9 19 0.00063 35.7 0.8 15 443-457 23-37 (207)
335 2p5t_B PEZT; postsegregational 25.5 29 0.001 35.6 2.3 17 441-457 33-49 (253)
336 3s4r_A Vimentin; alpha-helix, 25.4 3.7E+02 0.013 24.2 12.0 31 284-314 54-84 (93)
337 3iij_A Coilin-interacting nucl 25.4 19 0.00066 34.4 0.8 16 442-457 13-28 (180)
338 2orw_A Thymidine kinase; TMTK, 25.2 14 0.00048 36.6 -0.2 17 442-458 5-21 (184)
339 1gm5_A RECG; helicase, replica 24.8 13 0.00044 45.4 -0.7 39 416-457 368-406 (780)
340 2ke4_A CDC42-interacting prote 24.8 4E+02 0.014 24.3 10.6 34 198-231 4-37 (98)
341 2zj8_A DNA helicase, putative 24.7 20 0.00067 42.7 0.8 21 435-457 36-56 (720)
342 2i3b_A HCR-ntpase, human cance 24.6 18 0.00061 36.2 0.4 16 442-457 3-18 (189)
343 1x79_B RAB GTPase binding effe 24.5 4.5E+02 0.015 24.8 13.9 64 659-725 7-70 (112)
344 3c8u_A Fructokinase; YP_612366 24.3 23 0.00078 35.1 1.1 18 440-457 22-39 (208)
345 2pt7_A CAG-ALFA; ATPase, prote 24.1 16 0.00056 39.6 0.0 19 437-457 170-188 (330)
346 3kta_A Chromosome segregation 24.0 19 0.00064 34.5 0.4 16 442-457 28-43 (182)
347 2oto_A M protein; helical coil 24.0 4.9E+02 0.017 25.1 20.4 25 213-237 26-50 (155)
348 1ypw_A Transitional endoplasmi 23.9 28 0.00096 42.4 2.0 73 408-480 200-295 (806)
349 2og2_A Putative signal recogni 23.9 21 0.00071 39.6 0.8 16 442-457 159-174 (359)
350 3vaa_A Shikimate kinase, SK; s 23.8 23 0.00078 34.8 1.0 16 442-457 27-42 (199)
351 3pxi_A Negative regulator of g 23.8 26 0.00089 42.0 1.7 29 430-458 191-219 (758)
352 1m1j_A Fibrinogen alpha subuni 23.8 8.9E+02 0.03 28.0 14.3 29 418-447 227-255 (491)
353 2w83_C C-JUN-amino-terminal ki 23.7 3.2E+02 0.011 24.2 8.0 15 291-305 35-49 (77)
354 1xx6_A Thymidine kinase; NESG, 23.6 18 0.0006 36.5 0.1 18 442-459 10-27 (191)
355 1kht_A Adenylate kinase; phosp 23.6 24 0.00082 33.6 1.1 17 441-457 4-20 (192)
356 2p6r_A Afuhel308 helicase; pro 23.6 20 0.00069 42.4 0.6 25 431-457 33-57 (702)
357 3ghg_C Fibrinogen gamma chain; 23.4 8.5E+02 0.029 27.6 14.7 15 205-219 23-37 (411)
358 3rc3_A ATP-dependent RNA helic 23.4 21 0.00073 42.8 0.8 47 433-481 150-202 (677)
359 1l8d_A DNA double-strand break 23.3 4.1E+02 0.014 23.9 12.0 10 286-295 31-40 (112)
360 1vma_A Cell division protein F 23.2 22 0.00075 38.4 0.8 17 441-457 105-121 (306)
361 1gku_B Reverse gyrase, TOP-RG; 23.1 31 0.0011 43.4 2.2 24 430-455 63-86 (1054)
362 2fna_A Conserved hypothetical 23.0 25 0.00084 36.7 1.1 20 436-457 28-47 (357)
363 2qen_A Walker-type ATPase; unk 22.9 24 0.00083 36.7 1.1 17 441-457 32-48 (350)
364 3vem_A Helicase protein MOM1; 22.8 4.5E+02 0.015 24.9 9.4 37 209-248 39-75 (115)
365 2w6a_A ARF GTPase-activating p 22.7 1.3E+02 0.0043 25.5 5.0 32 208-239 26-57 (63)
366 4emc_A Monopolin complex subun 22.7 4.4E+02 0.015 27.0 10.0 12 359-375 79-90 (190)
367 1z6g_A Guanylate kinase; struc 22.5 21 0.0007 36.0 0.4 15 443-457 26-40 (218)
368 1uaa_A REP helicase, protein ( 22.3 25 0.00084 41.5 1.1 19 440-458 15-33 (673)
369 3lay_A Zinc resistance-associa 22.3 2.4E+02 0.0082 28.3 8.1 28 331-361 116-143 (175)
370 3uie_A Adenylyl-sulfate kinase 22.3 32 0.0011 33.7 1.8 18 440-457 25-42 (200)
371 2w83_C C-JUN-amino-terminal ki 22.2 4.1E+02 0.014 23.5 9.8 31 329-359 38-68 (77)
372 3cf2_A TER ATPase, transitiona 22.1 27 0.00091 42.9 1.3 74 408-481 200-296 (806)
373 2ze6_A Isopentenyl transferase 22.0 26 0.00089 36.2 1.0 15 442-456 3-17 (253)
374 1j1d_B Troponin T, TNT; THIN f 22.0 1.5E+02 0.0052 27.6 6.1 14 702-715 51-64 (106)
375 3t5d_A Septin-7; GTP-binding p 22.0 23 0.0008 36.7 0.7 21 437-457 5-25 (274)
376 2xv5_A Lamin-A/C; structural p 21.9 3.8E+02 0.013 23.3 8.2 40 214-253 3-42 (74)
377 1knq_A Gluconate kinase; ALFA/ 21.9 25 0.00085 33.4 0.8 17 441-457 9-25 (175)
378 2xzl_A ATP-dependent helicase 21.9 29 0.00098 42.4 1.5 26 431-458 368-393 (802)
379 1f2t_A RAD50 ABC-ATPase; DNA d 21.8 27 0.00094 33.2 1.1 15 443-457 26-40 (149)
380 1uf9_A TT1252 protein; P-loop, 21.7 28 0.00095 33.6 1.1 21 437-457 5-25 (203)
381 2wjy_A Regulator of nonsense t 21.7 29 0.001 42.4 1.6 26 431-458 364-389 (800)
382 1kag_A SKI, shikimate kinase I 21.6 25 0.00086 33.1 0.8 16 442-457 6-21 (173)
383 3l9o_A ATP-dependent RNA helic 21.5 29 0.00098 44.0 1.5 26 430-457 191-216 (1108)
384 3kb2_A SPBC2 prophage-derived 21.5 28 0.00095 32.5 1.1 16 442-457 3-18 (173)
385 1ytz_T Troponin T; muscle, THI 21.5 1.8E+02 0.0062 27.1 6.5 14 702-715 51-64 (107)
386 2zqm_A Prefoldin beta subunit 21.4 4.4E+02 0.015 23.6 11.6 33 217-249 7-39 (117)
387 2k48_A Nucleoprotein; viral pr 21.2 5.1E+02 0.017 24.2 9.6 62 657-718 34-100 (107)
388 1x8y_A Lamin A/C; structural p 21.1 3.4E+02 0.012 24.0 8.0 25 217-241 4-28 (86)
389 1go4_E MAD1 (mitotic arrest de 21.0 5E+02 0.017 24.0 10.1 29 287-315 13-41 (100)
390 3fb2_A Spectrin alpha chain, b 21.0 6E+02 0.02 24.9 13.4 16 240-255 91-106 (218)
391 1tev_A UMP-CMP kinase; ploop, 20.9 29 0.00098 33.0 1.0 16 442-457 5-20 (196)
392 2y3a_B Phosphatidylinositol 3- 20.9 1.7E+02 0.0058 31.8 7.2 112 225-358 13-137 (302)
393 3o8b_A HCV NS3 protease/helica 20.7 35 0.0012 41.0 1.9 17 442-458 234-250 (666)
394 2d7d_A Uvrabc system protein B 20.6 31 0.001 41.1 1.4 84 408-495 4-94 (661)
395 2bbw_A Adenylate kinase 4, AK4 20.4 27 0.00094 35.4 0.8 17 441-457 28-44 (246)
396 1wle_A Seryl-tRNA synthetase; 20.4 5.2E+02 0.018 29.9 11.5 6 595-600 366-371 (501)
397 3nbx_X ATPase RAVA; AAA+ ATPas 20.4 27 0.00094 40.3 0.9 26 431-458 34-59 (500)
398 2r2a_A Uncharacterized protein 20.3 26 0.00089 35.4 0.6 15 443-457 8-22 (199)
399 2ocy_A RAB guanine nucleotide 20.1 6.4E+02 0.022 24.9 17.5 7 304-310 94-100 (154)
400 2qag_A Septin-2, protein NEDD5 20.1 27 0.00094 38.2 0.8 24 434-457 31-54 (361)
401 2x3v_A Syndapin I, protein kin 20.0 7.9E+02 0.027 25.9 17.0 123 210-346 128-251 (337)
No 1
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=100.00 E-value=1.6e-80 Score=699.46 Aligned_cols=337 Identities=35% Similarity=0.524 Sum_probs=276.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHhhcCCEEEEEEeCCCCchhhccCCeeEEeee
Q 002276 311 AYKKCAAEISEASSTIQSKINHQVQLYEHLKIKFIEGTKERKELYNKVLELKGNIRVFCRCRPLNSEETAAGSVMAVDFE 390 (943)
Q Consensus 311 ~~~~~~~~i~~~~~~lq~~i~~~~~~~e~l~~kl~~e~~~RrkLhN~lqELKGNIRV~~RVRPl~~~E~~~g~~~~V~~~ 390 (943)
.+...+.++.+...+++.+++++...+++++++|.+++.+||+|||+|+||+|||||||||||+++.|...+.. .+.+.
T Consensus 7 ~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gnIrV~vRvRP~~~~E~~~~~~-~~~~~ 85 (412)
T 3u06_A 7 ALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDNIRVFCRIRPPLESEENRMCC-TWTYH 85 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEECCCCGGGTTSCBC-EEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEcCCCCchhccCcce-EEEec
Confidence 34445555555666677777888888888999999999999999999999999999999999999888655432 22222
Q ss_pred ccCCCeEEEEeCC------cCceeeecceeeCCCCCcccccccchhhHHHhhCCcceEEEeeCcccCccccccccCCCCC
Q 002276 391 SVRDGELTVISNG------APKKTFKFDAVFGPQADQVDVFQDTAPFANSVLDGYNVCIFAYGQTGTGKTFTMEGTKEAR 464 (943)
Q Consensus 391 s~~d~~i~v~~~g------~~~ktF~FD~VF~~~asQeeVFeev~pLV~svLdGyNvcIFAYGQTGSGKTyTM~G~~e~~ 464 (943)
++..+.+.... ...+.|+||+||+++++|++||+.+.|+|+++|+|||+||||||||||||||||+|.++++
T Consensus 86 --~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~~Q~~Vf~~v~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~ 163 (412)
T 3u06_A 86 --DESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSDIFEMVSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESV 163 (412)
T ss_dssp --ETTEEEEECCC-------CCCEEECSEEECTTCCHHHHHTTTHHHHHHHHTTCCEEEEEESSTTSSHHHHHTEETTEE
T ss_pred --CCCEEEEecCCcccccccCceEEeeCeEcCCCCCHHHHHHHHHHHHHHHHCCCceEEEEecCCCCCCeeEecCCCCCC
Confidence 23344443221 1246899999999999999999998999999999999999999999999999999999999
Q ss_pred CccHHhHHHHHHHHHhh-cccceeEEEEEEEEEecchhhhccccCCCCCCCcccceEEeCCCCceEcCCceEEEecChHH
Q 002276 465 GVNFRTLEELFRIIKER-EKLYRYDISVSVLEVYNEQIRDLLAVGSQPGAVSKRLEVRQAGEGMHHVPGLVEAHVNNISE 543 (943)
Q Consensus 465 GIIPRal~~LF~~i~~~-~~~~~y~V~VSflEIYNE~I~DLL~~~~~~~~~~k~LeIred~~g~v~V~gLtev~V~S~eE 543 (943)
|||||++++||..+... ...|.|.|+|||+|||||+|+|||.+... ...+.+.+++.++++|.||+++.|.|++|
T Consensus 164 Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~----~~~i~~~~~~~~~~~v~gl~~~~v~s~~e 239 (412)
T 3u06_A 164 GVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSNEQK----DMEIRMAKNNKNDIYVSNITEETVLDPNH 239 (412)
T ss_dssp CHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTCCSCC----CCCEEECSSCTTSEEETTCCCEECCSHHH
T ss_pred ccHHHHHHHHHHhhhhhcccCceEEEEEEEEEEeCCeeEEcCCCCCC----CceeeeeecCCCCEEEcceEEEEeCCHHH
Confidence 99999999999999873 45689999999999999999999975431 22344556778899999999999999999
Q ss_pred HHHHHHccccccccccCCCccCCCCceeeEEEEEEEEe---------ehhchh-------------hh------------
Q 002276 544 VWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRREL---------VEWGMH-------------KE------------ 589 (943)
Q Consensus 544 ~~~lL~~G~k~R~~asT~mN~~SSRSHsIftI~V~~~~---------~~~lVD-------------kE------------ 589 (943)
++.+|..|.++|++++|.||+.|||||+||+|.|.+.. ..++|| +|
T Consensus 240 ~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~kL~lVDLAGSEr~~~~~rl~E~~~INkSL~aLg 319 (412)
T 3u06_A 240 LRHLMHTAKMNRATASTAGNERSSRSHAVTKLELIGRHAEKQEISVGSINLVDLAGSESPKTSTRMTETKNINRSLSELT 319 (412)
T ss_dssp HHHHHHHHHHHCC-----CHHHHTTCEEEEEEEEEEEETTTTEEEEEEEEEEECCCCCC----------CTTTHHHHHHH
T ss_pred HHHHHHHHHhcccccccCCCCCCcCceEEEEEEEEEEeCCCCCEEEEEEEEEECCCCCcCCccchhHhHHHHhHHHHHHH
Confidence 99999999999999999999999999999999997653 235666 12
Q ss_pred ---hhhh---cCCCCCcccchHHhhhhcCCCcceeEEEecCCCCcChHhhHHHHHHHhHhhcccccccccc
Q 002276 590 ---QAMA---SGSSRKNSKLTHLLQDSLGGDSKTLMFVQISPNENDLSETLCSLNFASRVRGIELGAAKKQ 654 (943)
Q Consensus 590 ---sALa---~~sPyRdSKLTrLLQDSLGGNSKTlMIv~ISPs~~~~~ETLsTLrFAsRak~Ik~~~~~~~ 654 (943)
.||+ .++||||||||+||||||||||+|+|||||||+..+++||++||+||+||++|++++++++
T Consensus 320 ~vI~aL~~~~~hiPyRdSkLT~LLqdsLgGnskt~mI~~vsP~~~~~~ETl~TLrfA~rv~~i~~~~~~~n 390 (412)
T 3u06_A 320 NVILALLQKQDHIPYRNSKLTHLLMPSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRN 390 (412)
T ss_dssp HHHHHHHTTCSCCCGGGSHHHHHHGGGTSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHhccCCCCCccccHHHHHHHHhcCCCceEEEEEEeCCChhhHHHHHHHHHHHHHHhhccccccccc
Confidence 2332 4689999999999999999999999999999999999999999999999999998877654
No 2
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-80 Score=698.20 Aligned_cols=338 Identities=36% Similarity=0.526 Sum_probs=269.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHhhcCCEEEEEEeCCCCch-hhccCCeeEEeee
Q 002276 312 YKKCAAEISEASSTIQSKINHQVQLYEHLKIKFIEGTKERKELYNKVLELKGNIRVFCRCRPLNSE-ETAAGSVMAVDFE 390 (943)
Q Consensus 312 ~~~~~~~i~~~~~~lq~~i~~~~~~~e~l~~kl~~e~~~RrkLhN~lqELKGNIRV~~RVRPl~~~-E~~~g~~~~V~~~ 390 (943)
++..+..+.+...+++..++++...++++.++|.+++.+||+|||+++||||||||||||||+.+. |........+...
T Consensus 8 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgnIrV~vRvRP~~~~~e~~~~~~~~v~~~ 87 (403)
T 4etp_A 8 LKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNIRVYLRIRPALKNLENSDTSLINVNEF 87 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSEEEEEEECCCCTTTSCSCCTTEEECCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcccccCCCeeEEeec
Confidence 334444445555566667777777888899999999999999999999999999999999999876 4333333334322
Q ss_pred ccCCC--eEEEEe--CCcCceeeecceeeCCCCCcccccccchhhHHHhhCCcceEEEeeCcccCccccccccCCCCCCc
Q 002276 391 SVRDG--ELTVIS--NGAPKKTFKFDAVFGPQADQVDVFQDTAPFANSVLDGYNVCIFAYGQTGTGKTFTMEGTKEARGV 466 (943)
Q Consensus 391 s~~d~--~i~v~~--~g~~~ktF~FD~VF~~~asQeeVFeev~pLV~svLdGyNvcIFAYGQTGSGKTyTM~G~~e~~GI 466 (943)
....+ .+.+.. +....+.|.||+||+++++|++||+++.|+|+++|+|||+||||||||||||||||+|+ ++||
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~~~Q~~Vf~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~g~--~~Gi 165 (403)
T 4etp_A 88 DDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKEVGQLVQSSLDGYNVAIFAYGQTGSGKTFTMLNP--GDGI 165 (403)
T ss_dssp BTTTTBEEEEEEECSSSCEEEEEEESEEECTTCCHHHHHHHHHHHHHHHHTTCCEEEEEESCTTSSHHHHHHCT--TTSH
T ss_pred cCCCCceEEEEecCCCCcCceEEEcCEEECCCCchHHHHHHHHHHHHHHhCCcceEEEEECCCCCCCceEeCCC--CCcc
Confidence 22122 233322 22345789999999999999999999999999999999999999999999999999997 4699
Q ss_pred cHHhHHHHHHHHHh-hcccceeEEEEEEEEEecchhhhccccCCCCC---CCcccceEEeCC-CCceEcCCceEEEecCh
Q 002276 467 NFRTLEELFRIIKE-REKLYRYDISVSVLEVYNEQIRDLLAVGSQPG---AVSKRLEVRQAG-EGMHHVPGLVEAHVNNI 541 (943)
Q Consensus 467 IPRal~~LF~~i~~-~~~~~~y~V~VSflEIYNE~I~DLL~~~~~~~---~~~k~LeIred~-~g~v~V~gLtev~V~S~ 541 (943)
|||++++||..+.. ....|.|.|+|||+|||||+|+|||.+..... ....++.|++++ .++++|.|++++.|.|+
T Consensus 166 ipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~ 245 (403)
T 4etp_A 166 IPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTSVKLESE 245 (403)
T ss_dssp HHHHHHHHHHHHHHHHTTTEEEEEEEEEEEEETTEEEETTCC--------CCSCCCCEEEETTTTEEEETTCCCEECCCH
T ss_pred chhHHHHHHHHHHhhhccCceEEEEEEEEEEecceeeEccCCccccccccccCcceeeEEeCCCCCEEecCcEEEEeCCH
Confidence 99999999999987 44568999999999999999999998764221 123467788776 46799999999999999
Q ss_pred HHHHHHHHccccccccccCCCccCCCCceeeEEEEEEEEe---------ehhchh-----------------hh------
Q 002276 542 SEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRREL---------VEWGMH-----------------KE------ 589 (943)
Q Consensus 542 eE~~~lL~~G~k~R~~asT~mN~~SSRSHsIftI~V~~~~---------~~~lVD-----------------kE------ 589 (943)
++++.+|..|.++|++++|.||+.|||||+||+|.|.+.+ ..++|| +|
T Consensus 246 ~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INk 325 (403)
T 4etp_A 246 EMVEIILKKANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGAHSYGTLNLVDLAGSERINVSQVVGDRLRETQNINK 325 (403)
T ss_dssp HHHHHHHHHHC--C----CHHHHHHHTSEEEEEEEEEEEETTTCCEEEEEEEEEECCCCCCCCCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccCCcccCCcccEEEEEEEEeecCCCCeeEEEEEEEECCCCccccccCChhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999997654 235666 12
Q ss_pred ---------hhhh------cCCCCCcccchHHhhhhcCCCcceeEEEecCCCCcChHhhHHHHHHHhHhhccccccc
Q 002276 590 ---------QAMA------SGSSRKNSKLTHLLQDSLGGDSKTLMFVQISPNENDLSETLCSLNFASRVRGIELGAA 651 (943)
Q Consensus 590 ---------sALa------~~sPyRdSKLTrLLQDSLGGNSKTlMIv~ISPs~~~~~ETLsTLrFAsRak~Ik~~~~ 651 (943)
.||+ .++||||||||+||||||||||+|+|||||||+..+++||++||+||+||++|++++.
T Consensus 326 SL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~LLqdsLgGnskt~mi~~vsP~~~~~~ETl~TL~fA~rv~~~~~~~r 402 (403)
T 4etp_A 326 SLSALGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRLVSR 402 (403)
T ss_dssp HHHHHHHHHHHHTSSCTTTSCCCGGGSHHHHHTGGGTSTTCEEEEEEEECCSGGGHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhcccCCCCcCCcccchHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHHhhcccCCC
Confidence 2342 2689999999999999999999999999999999999999999999999999998874
No 3
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=100.00 E-value=2.8e-77 Score=664.94 Aligned_cols=309 Identities=38% Similarity=0.584 Sum_probs=264.5
Q ss_pred HhhcCCEEEEEEeCCCCchhhccCCeeEEeeeccCCCeEEEEeCCcCceeeecceeeCCCCCcccccccchhhHHHhhCC
Q 002276 359 LELKGNIRVFCRCRPLNSEETAAGSVMAVDFESVRDGELTVISNGAPKKTFKFDAVFGPQADQVDVFQDTAPFANSVLDG 438 (943)
Q Consensus 359 qELKGNIRV~~RVRPl~~~E~~~g~~~~V~~~s~~d~~i~v~~~g~~~ktF~FD~VF~~~asQeeVFeev~pLV~svLdG 438 (943)
+||+|||||||||||++..|...+...++. ..+...+.........+.|.||+||+++++|++||+++.|+|+++++|
T Consensus 1 ee~~~~i~V~vRvRP~~~~E~~~~~~~~~~--~~~~~~v~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~lv~~~l~G 78 (369)
T 3cob_A 1 EDMKGKIRVYCRLRPLCEKEIIAKERNAIR--SVDEFTVEHLWKDDKAKQHMYDRVFDGNATQDDVFEDTKYLVQSAVDG 78 (369)
T ss_dssp ---CCBCEEEEEECCCCHHHHHTTCCBCEE--ECSSSEEEEECTTSCEEEEECSEEECTTCCHHHHHHTTTHHHHHHHTT
T ss_pred CCCCCCeEEEEECCCCChhhccCCCcEEEE--cCCcEEEEecCCCCCceEEecCEEECCCCCcceehhhhhhhhHhhhcC
Confidence 589999999999999999987766543332 233334444444445689999999999999999999988999999999
Q ss_pred cceEEEeeCcccCccccccccCCCCCCccHHhHHHHHHHHHhhcccceeEEEEEEEEEecchhhhccccCCCCCCCcccc
Q 002276 439 YNVCIFAYGQTGTGKTFTMEGTKEARGVNFRTLEELFRIIKEREKLYRYDISVSVLEVYNEQIRDLLAVGSQPGAVSKRL 518 (943)
Q Consensus 439 yNvcIFAYGQTGSGKTyTM~G~~e~~GIIPRal~~LF~~i~~~~~~~~y~V~VSflEIYNE~I~DLL~~~~~~~~~~k~L 518 (943)
||+||||||||||||||||+|+++++|||||++++||+.+......+.|.|+|||+|||||+|+|||.+... ....+
T Consensus 79 ~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~---~~~~l 155 (369)
T 3cob_A 79 YNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQA---KRLKL 155 (369)
T ss_dssp CEEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEECSSCEEESSCCSSS---CCCCC
T ss_pred CceEEEEECCCCCCCeEeecCCCCCCchhHHHHHHHHHHHHhhccCceeEEEEEEEEEeCceeeecCCCccc---CCcce
Confidence 999999999999999999999999999999999999999998777789999999999999999999987532 24579
Q ss_pred eEEeCCCCceEcCCceEEEecChHHHHHHHHccccccccccCCCccCCCCceeeEEEEEEEEe---------ehhchh--
Q 002276 519 EVRQAGEGMHHVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRREL---------VEWGMH-- 587 (943)
Q Consensus 519 eIred~~g~v~V~gLtev~V~S~eE~~~lL~~G~k~R~~asT~mN~~SSRSHsIftI~V~~~~---------~~~lVD-- 587 (943)
.|++++.++++|.||+++.|.|++|++.+|..|.++|++++|.||..|||||+||+|.|.... ..++||
T Consensus 156 ~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lVDLA 235 (369)
T 3cob_A 156 DIKKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIARGKLSFVDLA 235 (369)
T ss_dssp EEEECTTSCEEEETCCCEEECSHHHHHHHHHHHHHHTCCCSCCTTCHHHHSEEEEEEEEEEEETTTCCEEEEEEEEEECC
T ss_pred EEEECCCCCEEccCCEEEEeCCHHHHHHHHHHHhhcceeecccCCCCCCcceEEEEEEEEEecCCCCcEEEEEEEEEeCC
Confidence 999999999999999999999999999999999999999999999999999999999997653 235666
Q ss_pred ---------------hh---------------hhhh---cCCCCCcccchHHhhhhcCCCcceeEEEecCCCCcChHhhH
Q 002276 588 ---------------KE---------------QAMA---SGSSRKNSKLTHLLQDSLGGDSKTLMFVQISPNENDLSETL 634 (943)
Q Consensus 588 ---------------kE---------------sALa---~~sPyRdSKLTrLLQDSLGGNSKTlMIv~ISPs~~~~~ETL 634 (943)
+| .||+ .++||||||||+||||||||||+|+|||||||+..+++||+
T Consensus 236 GSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~ETl 315 (369)
T 3cob_A 236 GSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETH 315 (369)
T ss_dssp CSSCCCCCSSCSHHHHHHHHHTHHHHHHHHHHHHHHTTCSCCCGGGCHHHHHTTTTTTSSSEEEEEEEECCBGGGHHHHH
T ss_pred CCCcccccCccchhhHHHHHHHHHHHHHHHHHHHHhcCCCcCCCcCCHHHHHHHHhcCCCccEEEEEEeCCccccHHHHH
Confidence 12 2333 36899999999999999999999999999999999999999
Q ss_pred HHHHHHhHhhccccccccccCChHHHHHHHHHHHHHHHH
Q 002276 635 CSLNFASRVRGIELGAAKKQLDTSELLRYKQMVEKTKQE 673 (943)
Q Consensus 635 sTLrFAsRak~Ik~~~~~~~~~~~el~rlk~~ie~LK~e 673 (943)
+||+||+||++|++.|.+|... .++.+|++++..++++
T Consensus 316 ~TLrfA~rak~i~~~~~~n~~~-~ei~~L~~~l~~~~~~ 353 (369)
T 3cob_A 316 NSLTYASRVRSIVNDPSKNVSS-KEVARLKKLVSYWKEQ 353 (369)
T ss_dssp HHHHHHHHHHTCBCCCCCCEEC-HHHHHHHHHTTCC---
T ss_pred HHHHHHHHHhhcccCCcccCCH-HHHHHHHHHHHHHHHh
Confidence 9999999999999999998876 5555555555554444
No 4
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=100.00 E-value=3.9e-75 Score=649.15 Aligned_cols=294 Identities=41% Similarity=0.582 Sum_probs=225.0
Q ss_pred HHHHHhHHHhhcCCEEEEEEeCCCCchhhccCCeeEEeeec------cCCCeEEEEe------------CCcCceeeecc
Q 002276 351 RKELYNKVLELKGNIRVFCRCRPLNSEETAAGSVMAVDFES------VRDGELTVIS------------NGAPKKTFKFD 412 (943)
Q Consensus 351 RrkLhN~lqELKGNIRV~~RVRPl~~~E~~~g~~~~V~~~s------~~d~~i~v~~------------~g~~~ktF~FD 412 (943)
--+|||+++|++|||||||||||+++.|...+... +.+.. .....+.+.. .....+.|+||
T Consensus 10 ~~~~hn~~~~~~~~irV~vRvRP~~~~E~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~FD 88 (376)
T 2rep_A 10 HSSGLVPRGSLKGNIRVFCRVRPVLPGEPTPPPGL-LLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPPRHDFSFD 88 (376)
T ss_dssp -------------CEEEEEEECCCCTTSCCCCGGG-SBCCC------CCCCEEECCC-----------------CEEECS
T ss_pred cccccchhhccCCCeEEEEEcCCCChhhcccCCce-EEEccCcccccCCCcEEEEecCCccccccccccCCCCceeeeec
Confidence 35799999999999999999999999887654321 11111 1222233221 11234689999
Q ss_pred eeeCCCCCcccccccchhhHHHhhCCcceEEEeeCcccCccccccccCCC----CCCccHHhHHHHHHHHHhh-ccccee
Q 002276 413 AVFGPQADQVDVFQDTAPFANSVLDGYNVCIFAYGQTGTGKTFTMEGTKE----ARGVNFRTLEELFRIIKER-EKLYRY 487 (943)
Q Consensus 413 ~VF~~~asQeeVFeev~pLV~svLdGyNvcIFAYGQTGSGKTyTM~G~~e----~~GIIPRal~~LF~~i~~~-~~~~~y 487 (943)
+||+++++|++||++++|+|+++|+|||+||||||||||||||||+|+.. .+|||||++++||..++.. ...+.|
T Consensus 89 ~Vf~~~~~Q~~Vy~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~ 168 (376)
T 2rep_A 89 RVFPPGSGQDEVFEEIAMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQLEGLIPRALRHLFSVAQELSGQGWTY 168 (376)
T ss_dssp EEECTTCCHHHHHHHHHHHHHGGGGTCCEEEEEECSTTSSHHHHHTBCSSCCGGGBCHHHHHHHHHHHHHHHGGGGTEEE
T ss_pred EEcCCcccchhhhhhHHHHHHHhcCCCceEEEEeCCCCCCCceEeecCCCCCcccCCcHHHHHHHHHHHHHHhhcCCeEE
Confidence 99999999999999999999999999999999999999999999999753 6899999999999999874 456899
Q ss_pred EEEEEEEEEecchhhhccccCCCCCCCcccceEEeC--CCCceEcCCceEEEecChHHHHHHHHccccccccccCCCccC
Q 002276 488 DISVSVLEVYNEQIRDLLAVGSQPGAVSKRLEVRQA--GEGMHHVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEH 565 (943)
Q Consensus 488 ~V~VSflEIYNE~I~DLL~~~~~~~~~~k~LeIred--~~g~v~V~gLtev~V~S~eE~~~lL~~G~k~R~~asT~mN~~ 565 (943)
.|+|||+|||||+|+|||++.... .....+.|+++ +.++++|.||+++.|.|++|++.+|..|.++|++++|.||+.
T Consensus 169 ~v~vS~~EIYnE~i~DLL~~~~~~-~~~~~l~ir~~~~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~ 247 (376)
T 2rep_A 169 SFVASYVEIYNETVRDLLATGTRK-GQGGECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNER 247 (376)
T ss_dssp EEEEEEEEEETTEEEETTCCC---------CCEEEC---CCCEEETTCCCEEECSHHHHHHHHHHHHHHHHHCC-----C
T ss_pred EEEEEEEEEECCEeeEcccccccc-ccCCCceEEeccCCCCCEEECCcEEEEeCCHHHHHHHHHHHHhhcccccccCCCC
Confidence 999999999999999999875321 12356889998 578899999999999999999999999999999999999999
Q ss_pred CCCceeeEEEEEEEEe---------ehhchh---------------------hh---------------hhhh---cCCC
Q 002276 566 SSRSHCMHCVMVRREL---------VEWGMH---------------------KE---------------QAMA---SGSS 597 (943)
Q Consensus 566 SSRSHsIftI~V~~~~---------~~~lVD---------------------kE---------------sALa---~~sP 597 (943)
|||||+||+|.|.+.. ..++|| +| .||+ .++|
T Consensus 248 SSRSH~Ifti~v~~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~~~~~rlkE~~~INkSL~aLg~vI~aL~~~~~hVP 327 (376)
T 2rep_A 248 SSRSHSVFQLQISGEHSSRGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQAINSSLSTLGLVIMALSNKESHVP 327 (376)
T ss_dssp GGGSEEEEEEEEEEEESSSCCEEEEEEEEEECCCCC------------------------CHHHHHHHHHHHHTTCSCCC
T ss_pred CCCceEEEEEEEEEEecCCCcEEEeEEEEEECCCCcccccccccCccccchhhHHhHhhHHHHHHHHHHHHHhcCCCccC
Confidence 9999999999997643 235555 11 2333 3579
Q ss_pred CCcccchHHhhhhcCCCcceeEEEecCCCCcChHhhHHHHHHHhHhhcc
Q 002276 598 RKNSKLTHLLQDSLGGDSKTLMFVQISPNENDLSETLCSLNFASRVRGI 646 (943)
Q Consensus 598 yRdSKLTrLLQDSLGGNSKTlMIv~ISPs~~~~~ETLsTLrFAsRak~I 646 (943)
|||||||+||||||||||||+||+||||+..+++||++||+||+||++|
T Consensus 328 YRdSkLT~LLqdsLgGnskT~mIa~isP~~~~~~ETlsTLrfA~Rv~~~ 376 (376)
T 2rep_A 328 YRNSKLTYLLQNSLGGSAKMLMFVNISPLEENVSESLNSLRFASKVNQC 376 (376)
T ss_dssp GGGSHHHHHTGGGTSTTCEEEEEEEECCCGGGHHHHHHHHHHHHHHC--
T ss_pred CcCCHHHHHHHHhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999999875
No 5
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=1.4e-74 Score=640.68 Aligned_cols=283 Identities=35% Similarity=0.507 Sum_probs=232.4
Q ss_pred HHhHHHhhcCCEEEEEEeCCCCchhhccCCeeEEeeeccCCCeEEEEe---------------------CCcCceeeecc
Q 002276 354 LYNKVLELKGNIRVFCRCRPLNSEETAAGSVMAVDFESVRDGELTVIS---------------------NGAPKKTFKFD 412 (943)
Q Consensus 354 LhN~lqELKGNIRV~~RVRPl~~~E~~~g~~~~V~~~s~~d~~i~v~~---------------------~g~~~ktF~FD 412 (943)
+|++.+|++|||||+|||||++..|...+...++.+.+ ..+.+.. .....+.|.||
T Consensus 1 ~~~~~~d~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~---~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD 77 (355)
T 3lre_A 1 MSVTEEDLCHHMKVVVRVRPENTKEKAAGFHKVVHVVD---KHILVFDPKQEEVSFFHGKKTTNQNVIKKQNKDLKFVFD 77 (355)
T ss_dssp -----------CEEEEEECCCCHHHHHTTCCBSEEECS---SSEEEEC------------------------CCEEEECS
T ss_pred CCcChhhccCCCEEEEEeCcCChHHHhcCCceEEEecC---CceEEecCCCCcceeecccccccccchhccCCCceEEec
Confidence 57888999999999999999999999888766665432 1111111 11234689999
Q ss_pred eeeCCCCCcccccccch-hhHHHhhCCcceEEEeeCcccCccccccccCCCCCCccHHhHHHHHHHHHhhcccceeEEEE
Q 002276 413 AVFGPQADQVDVFQDTA-PFANSVLDGYNVCIFAYGQTGTGKTFTMEGTKEARGVNFRTLEELFRIIKEREKLYRYDISV 491 (943)
Q Consensus 413 ~VF~~~asQeeVFeev~-pLV~svLdGyNvcIFAYGQTGSGKTyTM~G~~e~~GIIPRal~~LF~~i~~~~~~~~y~V~V 491 (943)
+||+++++|++||+.++ |+|+++++|||+||||||||||||||||+|+.+++|||||++.+||..+......+.|.|.|
T Consensus 78 ~vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lf~~i~~~~~~~~~~v~v 157 (355)
T 3lre_A 78 AVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEPGVMYLTMLHLYKCMDEIKEEKICSTAV 157 (355)
T ss_dssp EEECTTCCHHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTTTTEEEEEEE
T ss_pred eEECCCCChHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeeccCCCCCCeeehhhhHHHHhhhhhccCceEEEEE
Confidence 99999999999999986 99999999999999999999999999999999999999999999999999877778999999
Q ss_pred EEEEEecchhhhccccCCCCCCCcccceEEeCCCCceEcCCceEEEecChHHHHHHHHccccccccccCCCccCCCCcee
Q 002276 492 SVLEVYNEQIRDLLAVGSQPGAVSKRLEVRQAGEGMHHVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHC 571 (943)
Q Consensus 492 SflEIYNE~I~DLL~~~~~~~~~~k~LeIred~~g~v~V~gLtev~V~S~eE~~~lL~~G~k~R~~asT~mN~~SSRSHs 571 (943)
||+|||||+|+|||.+. ..+.|++++.++++|.||+++.|.|++|++.+|..|.++|++++|.||+.|||||+
T Consensus 158 S~~EIYnE~i~DLL~~~-------~~l~ire~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~ 230 (355)
T 3lre_A 158 SYLEVYNEQIRDLLVNS-------GPLAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHA 230 (355)
T ss_dssp EEEEEETTEEEESSSCC-------CCBEEEECTTSCEEEETCCCBCCCSHHHHHHHHHHHHHTSCBC-----CBCTTCEE
T ss_pred EEEEEECCEEEECcCCC-------CCceeEEcCCCCEEeeeeeEEecCCHHHHHHHHHHHHhcCCcccccCcCCCCCCcE
Confidence 99999999999999753 36999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEEee------------hhchh-----------------hh---------------hhhh------cCCCCCcc
Q 002276 572 MHCVMVRRELV------------EWGMH-----------------KE---------------QAMA------SGSSRKNS 601 (943)
Q Consensus 572 IftI~V~~~~~------------~~lVD-----------------kE---------------sALa------~~sPyRdS 601 (943)
||+|.|..... .++|| +| .||+ .++|||||
T Consensus 231 if~i~v~~~~~~~~~~~~~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdS 310 (355)
T 3lre_A 231 VFQIYLRQQDKTASINQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKRKNQHIPYRNS 310 (355)
T ss_dssp EEEEEEEEEETTSCTTCCCCCEEEEEEECCCCCC-----------------CHHHHHHHHHHHHHC--------CCGGGS
T ss_pred EEEEEEEEecCCCCCCCCEEEEEEEEEECCCCCcCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCCcccC
Confidence 99999976532 25666 12 3443 26899999
Q ss_pred cchHHhhhhcCCCcceeEEEecCCCCcChHhhHHHHHHHhHhhcc
Q 002276 602 KLTHLLQDSLGGDSKTLMFVQISPNENDLSETLCSLNFASRVRGI 646 (943)
Q Consensus 602 KLTrLLQDSLGGNSKTlMIv~ISPs~~~~~ETLsTLrFAsRak~I 646 (943)
|||+||||||||||+|+||+||||+..+++||++||+||+|||+|
T Consensus 311 kLT~lL~dsLgGnskt~mIa~isP~~~~~~ETl~TL~fA~rak~I 355 (355)
T 3lre_A 311 KLTRLLKDSLGGNCQTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355 (355)
T ss_dssp HHHHHTTTTSSTTSEEEEEEEECCBGGGHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999986
No 6
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=100.00 E-value=1.5e-74 Score=656.27 Aligned_cols=297 Identities=35% Similarity=0.506 Sum_probs=252.6
Q ss_pred HHHhhcCCEEEEEEeCCCCchhhccCCeeEEeeeccCCCeEEEEeC---------------CcCceeeecceeeCC----
Q 002276 357 KVLELKGNIRVFCRCRPLNSEETAAGSVMAVDFESVRDGELTVISN---------------GAPKKTFKFDAVFGP---- 417 (943)
Q Consensus 357 ~lqELKGNIRV~~RVRPl~~~E~~~g~~~~V~~~s~~d~~i~v~~~---------------g~~~ktF~FD~VF~~---- 417 (943)
...+++|||||||||||+++.|...+..+++.++... ..+++... ....+.|+||+||++
T Consensus 32 ~~~~~~~~vrV~vRvRP~~~~E~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~F~FD~vF~~~~~~ 110 (443)
T 2owm_A 32 VSKDPGANVRVVVRVRAFLPRELERNAECIVEMDPAT-ERTSLLVPQETDFADARGARSRRVLEEKSFTFDKSFWSHNTE 110 (443)
T ss_dssp --CCCCEECEEEEEEECCCHHHHHTTCCCCEEECSSS-CEEEECCCC---------------CCCEEEECSEEEEESCTT
T ss_pred ccCCCCCCeEEEEEeCCCChHHhhcCCceEEEEcCCC-ccEEEecCCCcccccccccccccccCCceEecCeEeCCCCcC
Confidence 3578999999999999999999887777666665432 22222211 013578999999976
Q ss_pred ---CCCcccccccch-hhHHHhhCCcceEEEeeCcccCccccccccCCCCCCccHHhHHHHHHHHHhh---cccceeEEE
Q 002276 418 ---QADQVDVFQDTA-PFANSVLDGYNVCIFAYGQTGTGKTFTMEGTKEARGVNFRTLEELFRIIKER---EKLYRYDIS 490 (943)
Q Consensus 418 ---~asQeeVFeev~-pLV~svLdGyNvcIFAYGQTGSGKTyTM~G~~e~~GIIPRal~~LF~~i~~~---~~~~~y~V~ 490 (943)
.++|++||+.++ |+|+++|+|||+||||||||||||||||+|+++++|||||++++||..+... ...+.|.|+
T Consensus 111 ~~~~asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~G~~~~~GIipr~~~~lF~~i~~~~~~~~~~~~~V~ 190 (443)
T 2owm_A 111 DEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTPDQPGLIPRTCEDLFQRIASAQDETPNISYNVK 190 (443)
T ss_dssp STTCCCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHTCCTTSCCHHHHHHHHHHHHHHHTTTTSTTCEEEEE
T ss_pred CccCCCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEeecCCCCCchHHHHHHHHHHHHHhhhcccCCceEEEE
Confidence 489999999987 9999999999999999999999999999999999999999999999999874 246899999
Q ss_pred EEEEEEecchhhhccccCCCCCCCcccceEEeCCCCceEcCCceEEEecChHHHHHHHHccccccccccCCCccCCCCce
Q 002276 491 VSVLEVYNEQIRDLLAVGSQPGAVSKRLEVRQAGEGMHHVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSH 570 (943)
Q Consensus 491 VSflEIYNE~I~DLL~~~~~~~~~~k~LeIred~~g~v~V~gLtev~V~S~eE~~~lL~~G~k~R~~asT~mN~~SSRSH 570 (943)
|||+|||||+|+|||++... ......|+|++++.++++|.||+++.|.|++|++.+|..|.++|++++|.||++|||||
T Consensus 191 vS~lEIYnE~i~DLL~~~~~-~~~~~~l~ire~~~~g~~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~~N~~SSRSH 269 (443)
T 2owm_A 191 VSYFEVYNEHVRDLLAPVVP-NKPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTSSRSH 269 (443)
T ss_dssp EEEEEEETTEEEETTSCCCS-SCCCCCCEEEEETTTEEEEETCCCEECCSHHHHHHHHHHHHTTSCBCSSSSSCBCTTEE
T ss_pred EEEEEEECCEeeEccCcccc-CCcccccceeECCCCCEeccCCEEEEcCCHHHHHHHHHHHHhhCCcccCcCCCccCCCe
Confidence 99999999999999987432 12245699999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEEEe-------------ehhchh-----------------hh---------------hhhhc-----------
Q 002276 571 CMHCVMVRREL-------------VEWGMH-----------------KE---------------QAMAS----------- 594 (943)
Q Consensus 571 sIftI~V~~~~-------------~~~lVD-----------------kE---------------sALa~----------- 594 (943)
+||+|.|.+.. .+++|| +| .||+.
T Consensus 270 ~Ifti~v~~~~~~~~~~~~~~~~skL~lVDLAGSER~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~ 349 (443)
T 2owm_A 270 AVFTIMLKQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKSLTTLGRVIAALADPKSSASRPSSP 349 (443)
T ss_dssp EEEEEEEEEEC-------CCEEEEEEEEEECCCCCC--------------CCSSHHHHHHHHHHHHHCC-----------
T ss_pred EEEEEEEEEeecccCCCCcceEEEEEEEEECCCCccccccCCccccccchhhhcHHHHHHHHHHHHHhcccccccccccc
Confidence 99999986531 235666 12 23332
Q ss_pred --------------CCCCCcccchHHhhhhcCCCcceeEEEecCCCCcChHhhHHHHHHHhHhhccccccccccCCh
Q 002276 595 --------------GSSRKNSKLTHLLQDSLGGDSKTLMFVQISPNENDLSETLCSLNFASRVRGIELGAAKKQLDT 657 (943)
Q Consensus 595 --------------~sPyRdSKLTrLLQDSLGGNSKTlMIv~ISPs~~~~~ETLsTLrFAsRak~Ik~~~~~~~~~~ 657 (943)
++||||||||+||||||||||+|+||+||||+ +++||++||+||+||++|++.+.+|+++.
T Consensus 350 ~~~g~~~~~~~~~~hVPYRdSkLTrLLqdsLgGnskT~mIa~iSP~--~~~ETlsTLrfA~rak~I~n~~~vN~~d~ 424 (443)
T 2owm_A 350 VKSGRGRTPGPANSVVPYRDSVLTWLLKDSLGGNSKTAMIACISPT--DYDETLSTLRYADQAKRIRTRAVVNQVDG 424 (443)
T ss_dssp --------------CCCGGGSHHHHHSTTTTTSSCEEEEEEEECSS--CHHHHHHHHHHHHHHTTCEECCCCCCC--
T ss_pred cccccccccccCCCcccCcccHhHHHHHHhhCCCCcEEEEEEeccc--cHHHHHHHHHHHHHHhhccccceecccCC
Confidence 58999999999999999999999999999997 69999999999999999999999998543
No 7
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=100.00 E-value=1.4e-74 Score=642.56 Aligned_cols=299 Identities=37% Similarity=0.560 Sum_probs=255.8
Q ss_pred hhcCCEEEEEEeCCCCchhhccCCeeEEeeeccC-CCeEEEEeCCcCceeeecceeeCCCCCcccccccch-hhHHHhhC
Q 002276 360 ELKGNIRVFCRCRPLNSEETAAGSVMAVDFESVR-DGELTVISNGAPKKTFKFDAVFGPQADQVDVFQDTA-PFANSVLD 437 (943)
Q Consensus 360 ELKGNIRV~~RVRPl~~~E~~~g~~~~V~~~s~~-d~~i~v~~~g~~~ktF~FD~VF~~~asQeeVFeev~-pLV~svLd 437 (943)
..+|||||||||||+++.|...+...++.++... +..+.+ . .+.|+||+||+++++|++||++++ |+|+++++
T Consensus 8 ~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~i~~--~---~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~ 82 (365)
T 2y65_A 8 PAEDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISI--A---GKVYLFDKVFKPNASQEKVYNEAAKSIVTDVLA 82 (365)
T ss_dssp CCEEECEEEEEECCCCHHHHHTTCCBCEECCSSSTTCEEEE--T---TEEEECSEEECTTCCHHHHHHHHTHHHHHHHHT
T ss_pred CCCCCeEEEEEcCcCChhHhccCCceEEEeCCCCCCcEEEE--C---CEEEeCceEecCCCCHHHHHHHhhhhHHHHHhC
Confidence 4689999999999999999888877777765432 223322 2 478999999999999999999976 99999999
Q ss_pred CcceEEEeeCcccCccccccccCCC---CCCccHHhHHHHHHHHHhhcccceeEEEEEEEEEecchhhhccccCCCCCCC
Q 002276 438 GYNVCIFAYGQTGTGKTFTMEGTKE---ARGVNFRTLEELFRIIKEREKLYRYDISVSVLEVYNEQIRDLLAVGSQPGAV 514 (943)
Q Consensus 438 GyNvcIFAYGQTGSGKTyTM~G~~e---~~GIIPRal~~LF~~i~~~~~~~~y~V~VSflEIYNE~I~DLL~~~~~~~~~ 514 (943)
|||+||||||||||||||||+|+.. .+|||||++++||..+......+.|.|+|||+|||||+|+|||++..
T Consensus 83 G~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~----- 157 (365)
T 2y65_A 83 GYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVSK----- 157 (365)
T ss_dssp TCCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHCCSCEEEEEEEEEEEEETTEEEETTCTTC-----
T ss_pred CCceEEEeecCCCCCCceEEecCCCCcccCChHHHHHHHHHHHHHhccCCceEEEEEEEEEEECCeeeecccCCc-----
Confidence 9999999999999999999999753 56999999999999998877779999999999999999999997542
Q ss_pred cccceEEeCCCCceEcCCceEEEecChHHHHHHHHccccccccccCCCccCCCCceeeEEEEEEEEe---------ehhc
Q 002276 515 SKRLEVRQAGEGMHHVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRREL---------VEWG 585 (943)
Q Consensus 515 ~k~LeIred~~g~v~V~gLtev~V~S~eE~~~lL~~G~k~R~~asT~mN~~SSRSHsIftI~V~~~~---------~~~l 585 (943)
..+.|++++.++++|.||+++.|.|++|++.+|..|.++|++++|.||.+|||||+||+|.|.+.+ ..++
T Consensus 158 -~~l~i~e~~~~~~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~l 236 (365)
T 2y65_A 158 -VNLSVHEDKNRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLINVKQENLENQKKLSGKLYL 236 (365)
T ss_dssp -CSBCEEECSSSCEEETTCCCEEECSHHHHHHHHHHHHHHHTTTCSCHHHHHHTSEEEEEEEEEEEETTTCCEEEEEEEE
T ss_pred -CCceEEECCCCCEEecCCEEEecCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEEEecCCCCEeEEEEEE
Confidence 468999999999999999999999999999999999999999999999999999999999997653 2356
Q ss_pred hh-----------------hh---------------hhhh----cCCCCCcccchHHhhhhcCCCcceeEEEecCCCCcC
Q 002276 586 MH-----------------KE---------------QAMA----SGSSRKNSKLTHLLQDSLGGDSKTLMFVQISPNEND 629 (943)
Q Consensus 586 VD-----------------kE---------------sALa----~~sPyRdSKLTrLLQDSLGGNSKTlMIv~ISPs~~~ 629 (943)
|| +| .||+ .++||||||||+||||||||||+|+||+||||+..+
T Consensus 237 VDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~~~~ 316 (365)
T 2y65_A 237 VDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKLTRILQESLGGNARTTIVICCSPASFN 316 (365)
T ss_dssp EECCCCCC----------------CCHHHHHHHHHHHHHHHCCCSCCCGGGCHHHHHTGGGTTSSSEEEEEEEECCBGGG
T ss_pred EECCCCCcchhcCCcchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccccCHHHHHHHhhcCCCccEEEEEEecCccCC
Confidence 66 12 2342 368999999999999999999999999999999999
Q ss_pred hHhhHHHHHHHhHhhccccccccccCChHH-HHH-HHHHHHH
Q 002276 630 LSETLCSLNFASRVRGIELGAAKKQLDTSE-LLR-YKQMVEK 669 (943)
Q Consensus 630 ~~ETLsTLrFAsRak~Ik~~~~~~~~~~~e-l~r-lk~~ie~ 669 (943)
++||++||+||+||+.|++.|.+|+....+ +.+ |++++++
T Consensus 317 ~~ETl~TL~fA~rak~I~n~~~~n~~~~~~~~~~~~~~e~~~ 358 (365)
T 2y65_A 317 ESETKSTLDFGRRAKTVKNVVCVNEELTAEEWKRRYEKEKEK 358 (365)
T ss_dssp HHHHHHHHHHHHHHTTCEEECCCEEECCSHHHHHC-------
T ss_pred HHHHHHHHHHHHHHhcccCcceeCCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999988765443 332 4444443
No 8
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=100.00 E-value=4.1e-74 Score=631.55 Aligned_cols=285 Identities=46% Similarity=0.678 Sum_probs=239.4
Q ss_pred hhcCCEEEEEEeCCCCchhhccC-CeeEEeeeccCCCeEEEEeCCcCceeeecceeeCCCCCcccccccchhhHHHhhCC
Q 002276 360 ELKGNIRVFCRCRPLNSEETAAG-SVMAVDFESVRDGELTVISNGAPKKTFKFDAVFGPQADQVDVFQDTAPFANSVLDG 438 (943)
Q Consensus 360 ELKGNIRV~~RVRPl~~~E~~~g-~~~~V~~~s~~d~~i~v~~~g~~~ktF~FD~VF~~~asQeeVFeev~pLV~svLdG 438 (943)
+++|||||+|||||++..|...+ ...++.++...+..+.+... ...+.|.||+||+++++|++||+++.|+|+++++|
T Consensus 1 ~~~~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~f~FD~Vf~~~~~Q~~Vy~~v~~lv~~~l~G 79 (330)
T 2h58_A 1 GSKGNIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHK-GKPVSFELDKVFSPQASQQDVFQEVQALVTSCIDG 79 (330)
T ss_dssp ----CEEEEEEECCCCGGGCSSGGGSBCEEECSSCTTEEEEEET-TEEEEEECSEEECTTCCHHHHHTTTHHHHHHHHTT
T ss_pred CCCCCEEEEEEcCCCChhhcccCCCccEEEEeCCCCcEEEEcCC-CCeeEEecCeEeCCCCCcHhHHHHHHHHHHHHhCC
Confidence 47999999999999998886432 22345554443444444433 34678999999999999999999999999999999
Q ss_pred cceEEEeeCcccCccccccccCCCCCCccHHhHHHHHHHHHhhcccceeEEEEEEEEEecchhhhccccCCCCCCCcccc
Q 002276 439 YNVCIFAYGQTGTGKTFTMEGTKEARGVNFRTLEELFRIIKEREKLYRYDISVSVLEVYNEQIRDLLAVGSQPGAVSKRL 518 (943)
Q Consensus 439 yNvcIFAYGQTGSGKTyTM~G~~e~~GIIPRal~~LF~~i~~~~~~~~y~V~VSflEIYNE~I~DLL~~~~~~~~~~k~L 518 (943)
||+||||||||||||||||+|+++++|||||++++||..++.....+.|.|+|||+|||||+|+|||++... ....+
T Consensus 80 ~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~---~~l~i 156 (330)
T 2h58_A 80 FNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKEPQ---EKLEI 156 (330)
T ss_dssp CCEEEEEESSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSCSSC---CCCCC
T ss_pred CEEEEEeECCCCCCCcEEEecCCCCCcHHHHHHHHHHHhhhcccCCceEEEEEEEEEEECCChhhccccccc---ccceE
Confidence 999999999999999999999999999999999999999998777789999999999999999999976532 12234
Q ss_pred eEEeCCCCceEcCCceEEEecChHHHHHHHHccccccccccCCCccCCCCceeeEEEEEEEEe---------ehhchh--
Q 002276 519 EVRQAGEGMHHVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRREL---------VEWGMH-- 587 (943)
Q Consensus 519 eIred~~g~v~V~gLtev~V~S~eE~~~lL~~G~k~R~~asT~mN~~SSRSHsIftI~V~~~~---------~~~lVD-- 587 (943)
.+++++.++++|+||+++.|.|++|++.+|..|.++|++++|.||++|||||+||+|.|.... ..++||
T Consensus 157 ~~~~~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lVDLA 236 (330)
T 2h58_A 157 RLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHALLIVTVRGVDCSTGLRTTGKLNLVDLA 236 (330)
T ss_dssp EECTTSSCCEECTTCCCEEECSHHHHHHHHHHHHHHTTCTTCCSCSCGGGSEEEEEEEEEEEETTTTEEEEEEEEEEECC
T ss_pred EEeecCCCCEecCCCEEEEeCCHHHHHHHHHHHHhhCCcccccCCCCcCCccEEEEEEEEEEecCCCcEEEEEEEEEeCC
Confidence 444678899999999999999999999999999999999999999999999999999997643 235666
Q ss_pred ---------------hh---------------hhhh---cCCCCCcccchHHhhhhcCCCcceeEEEecCCCCcChHhhH
Q 002276 588 ---------------KE---------------QAMA---SGSSRKNSKLTHLLQDSLGGDSKTLMFVQISPNENDLSETL 634 (943)
Q Consensus 588 ---------------kE---------------sALa---~~sPyRdSKLTrLLQDSLGGNSKTlMIv~ISPs~~~~~ETL 634 (943)
+| .||. .++||||||||+||||||||||+|+||+||||+..+++||+
T Consensus 237 GSEr~~~t~~~g~r~~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lL~dsLgGns~t~mI~~isP~~~~~~ETl 316 (330)
T 2h58_A 237 GSERVGKSGAEGSRLREAQHINKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQDSLSGDSKTLMVVQVSPVEKNTSETL 316 (330)
T ss_dssp CCCCCC------HHHHHHHHHHHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTHHHHSTTCEEEEEEEECCBGGGHHHHH
T ss_pred CCCcccccCCchhhhHHHHHhhHhHHHHHHHHHHHhcCCCCCcccccHHHHHHHHHhCCCceEEEEEEeCCccccHHHHH
Confidence 12 2333 36899999999999999999999999999999999999999
Q ss_pred HHHHHHhHhhcccc
Q 002276 635 CSLNFASRVRGIEL 648 (943)
Q Consensus 635 sTLrFAsRak~Ik~ 648 (943)
+||+||+||++|++
T Consensus 317 ~TL~fA~rak~i~~ 330 (330)
T 2h58_A 317 YSLKFAERVRSVEL 330 (330)
T ss_dssp HHHHHHHHHC----
T ss_pred HHHHHHHHHhhCcC
Confidence 99999999999963
No 9
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=100.00 E-value=2.7e-74 Score=637.27 Aligned_cols=288 Identities=34% Similarity=0.520 Sum_probs=243.0
Q ss_pred cCCEEEEEEeCCCCchhhccCCeeEEeeeccCCCeEEEEeC---------CcCceeeecceeeCCCCCcccccccch-hh
Q 002276 362 KGNIRVFCRCRPLNSEETAAGSVMAVDFESVRDGELTVISN---------GAPKKTFKFDAVFGPQADQVDVFQDTA-PF 431 (943)
Q Consensus 362 KGNIRV~~RVRPl~~~E~~~g~~~~V~~~s~~d~~i~v~~~---------g~~~ktF~FD~VF~~~asQeeVFeev~-pL 431 (943)
.+||||||||||++..|...+...++.+... +..+.+... ....+.|+||+||+++++|++||+++. |+
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~-~~~v~v~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~pl 81 (350)
T 2vvg_A 3 SDNIKVIVRCRPLNARETRENALNIIRMDEA-SAQVIVDPPEQEKSATQAKKVPRTFTFDAVYDQTSCNYGIFQASFKPL 81 (350)
T ss_dssp -CBCEEEEEECCCCHHHHHTTCCBCEEEEGG-GTEEEECC--------------EEEECSEEECTTCCHHHHHHHTTHHH
T ss_pred CCCeEEEEEeCCCChhhhccCCceEEEEcCC-CCEEEEeeccccccccccCCCceEeeCCEEECCCcchhHHHHHHHHHH
Confidence 5899999999999999988777777766543 234444321 224678999999999999999999865 99
Q ss_pred HHHhhCCcceEEEeeCcccCccccccccCCCCCCccHHhHHHHHHHHHhhcccceeEEEEEEEEEecchhhhccccCCCC
Q 002276 432 ANSVLDGYNVCIFAYGQTGTGKTFTMEGTKEARGVNFRTLEELFRIIKEREKLYRYDISVSVLEVYNEQIRDLLAVGSQP 511 (943)
Q Consensus 432 V~svLdGyNvcIFAYGQTGSGKTyTM~G~~e~~GIIPRal~~LF~~i~~~~~~~~y~V~VSflEIYNE~I~DLL~~~~~~ 511 (943)
|+++++|||+||||||||||||||||+|+.+++|||||++++||+.+......+.|.|+|||+|||||+|+|||++
T Consensus 82 v~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~---- 157 (350)
T 2vvg_A 82 IDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIKN---- 157 (350)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTCCTTEEEEEEEEEEEEETTEEEETTTT----
T ss_pred HHHHhCCCceeEEeecCCCCCCCEEeecCCccCchHHHHHHHHHHHHHhhccCCcEEEEEEEEEEeCCEEEEcccC----
Confidence 9999999999999999999999999999999999999999999999997777789999999999999999999973
Q ss_pred CCCcccceEEeCCCCceEcCCceEEEecChHHHHHHHHccccccccccCCCccCCCCceeeEEEEEEEEe----------
Q 002276 512 GAVSKRLEVRQAGEGMHHVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRREL---------- 581 (943)
Q Consensus 512 ~~~~k~LeIred~~g~v~V~gLtev~V~S~eE~~~lL~~G~k~R~~asT~mN~~SSRSHsIftI~V~~~~---------- 581 (943)
...+.|++++.++++|.||+++.|.|++|++.+|..|.++|++++|.||++|||||+||+|.|....
T Consensus 158 ---~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~ 234 (350)
T 2vvg_A 158 ---NTKLPLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFMVRIECSEVIENKEVIRV 234 (350)
T ss_dssp ---EEEECEEEETTTEEEETTCCCEEESSHHHHHHHHHHHHHHC----------CTTCEEEEEEEEEEEEC----CEEEE
T ss_pred ---CcCceeeEcCCCCEEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcceEEEEEEEEEeeccCCCccEEE
Confidence 3579999999999999999999999999999999999999999999999999999999999986532
Q ss_pred -ehhchh-----------------hh---------------hhhh---cCCCCCcccchHHhhhhcCCCcceeEEEecCC
Q 002276 582 -VEWGMH-----------------KE---------------QAMA---SGSSRKNSKLTHLLQDSLGGDSKTLMFVQISP 625 (943)
Q Consensus 582 -~~~lVD-----------------kE---------------sALa---~~sPyRdSKLTrLLQDSLGGNSKTlMIv~ISP 625 (943)
..++|| +| .||+ .++||||||||+||||||||||+|+||+||||
T Consensus 235 skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP 314 (350)
T 2vvg_A 235 GKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISKLVEGATHIPYRDSKLTRLLQDSLGGNSKTLMCANISP 314 (350)
T ss_dssp EEEEEEECCCCCC---------------CTTHHHHHHHHHHHHHHHTCSSCCGGGCHHHHHTTTTTTSSSEEEEEEEECC
T ss_pred EEEEEEeCCCCCccccccccHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCCCccccHHHHHHHHhcCCCccEEEEEEeCC
Confidence 235666 12 2332 46899999999999999999999999999999
Q ss_pred CCcChHhhHHHHHHHhHhhccccccccccCCh
Q 002276 626 NENDLSETLCSLNFASRVRGIELGAAKKQLDT 657 (943)
Q Consensus 626 s~~~~~ETLsTLrFAsRak~Ik~~~~~~~~~~ 657 (943)
+..+++||++||+||+||++|++.|..|+.+.
T Consensus 315 ~~~~~~ETl~TL~fA~rak~i~n~~~~n~~~~ 346 (350)
T 2vvg_A 315 ASTNYDETMSTLRYADRAKQIKNKPRINEDPK 346 (350)
T ss_dssp BGGGHHHHHHHHHHHHHHTTCBCCCCCCBSCT
T ss_pred ccccHHHHHHHHHHHHHHhhccccceecCCch
Confidence 99999999999999999999999999988654
No 10
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=100.00 E-value=2.3e-74 Score=641.96 Aligned_cols=298 Identities=38% Similarity=0.573 Sum_probs=252.0
Q ss_pred hHHHhhcCCEEEEEEeCCCCchhhccCCeeEEeeeccCCCeEEEEeCC----cCceeeecceeeCCCCCcccccccch-h
Q 002276 356 NKVLELKGNIRVFCRCRPLNSEETAAGSVMAVDFESVRDGELTVISNG----APKKTFKFDAVFGPQADQVDVFQDTA-P 430 (943)
Q Consensus 356 N~lqELKGNIRV~~RVRPl~~~E~~~g~~~~V~~~s~~d~~i~v~~~g----~~~ktF~FD~VF~~~asQeeVFeev~-p 430 (943)
+..++.++||||||||||++..|...+...++.+.. ....+.+.... ...+.|+||+||+++++|++||++++ |
T Consensus 14 ~~~~~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~-~~~~v~v~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~p 92 (372)
T 3b6u_A 14 LYFQGSSESVRVVVRCRPMNGKEKAASYDKVVDVDV-KLGQVSVKNPKGTAHEMPKTFTFDAVYDWNAKQFELYDETFRP 92 (372)
T ss_dssp -------CBCEEEEEECCCCHHHHHTTCCBCEEEET-TTTEEEECCTTCTTTCCCEEEECSEEECTTCCHHHHHHHTHHH
T ss_pred CccCCCCCCeEEEEEcCCCChhhhccCCceEEEEeC-CCCEEEEECCCCCCCCCceEEEcCeEeCCcCchHHHHHHHHHH
Confidence 456789999999999999999998887777776643 23455554422 34689999999999999999999975 9
Q ss_pred hHHHhhCCcceEEEeeCcccCccccccccCC---CCCCccHHhHHHHHHHHHhhcccceeEEEEEEEEEecchhhhcccc
Q 002276 431 FANSVLDGYNVCIFAYGQTGTGKTFTMEGTK---EARGVNFRTLEELFRIIKEREKLYRYDISVSVLEVYNEQIRDLLAV 507 (943)
Q Consensus 431 LV~svLdGyNvcIFAYGQTGSGKTyTM~G~~---e~~GIIPRal~~LF~~i~~~~~~~~y~V~VSflEIYNE~I~DLL~~ 507 (943)
+|+++|+|||+||||||||||||||||+|.. +.+|||||++++||..+... ..+.|.|+|||+|||||+|+|||++
T Consensus 93 lv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~Giipr~~~~lF~~i~~~-~~~~~~v~vS~~EIYnE~i~DLL~~ 171 (372)
T 3b6u_A 93 LVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHIFTHISRS-QNQQYLVRASYLEIYQEEIRDLLSK 171 (372)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHHTBCTTSGGGBCHHHHHHHHHHHHHHTC-SSCEEEEEEEEEEEETTEEEETTSS
T ss_pred HHHHHhCCCeeeEEeecCCCCCCCEeEecCCCCcccCCcHHHHHHHHHHHhhhc-cCCceEEEEEEEEEeCCEEEECCCC
Confidence 9999999999999999999999999999964 45799999999999999873 4589999999999999999999986
Q ss_pred CCCCCCCcccceEEeCCCCceEcCCceEEEecChHHHHHHHHccccccccccCCCccCCCCceeeEEEEEEEEe------
Q 002276 508 GSQPGAVSKRLEVRQAGEGMHHVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRREL------ 581 (943)
Q Consensus 508 ~~~~~~~~k~LeIred~~g~v~V~gLtev~V~S~eE~~~lL~~G~k~R~~asT~mN~~SSRSHsIftI~V~~~~------ 581 (943)
.. ...+.|++++.++++|.||+++.|.|++|++.+|..|.++|++++|.||..|||||+||+|.|....
T Consensus 172 ~~-----~~~l~i~e~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~ 246 (372)
T 3b6u_A 172 DQ-----TKRLELKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFVITIECSEVGLDGE 246 (372)
T ss_dssp CT-----TCCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTTTCSSHHHHHHTSEEEEEEEEEEEC-----C
T ss_pred CC-----CCCceEEECCCCcEecCCCEEEEecCHHHHHHHHHHHHHhcCcccccCCCCCCcceEEEEEEEEEeecCCCCC
Confidence 53 3579999999999999999999999999999999999999999999999999999999999986532
Q ss_pred ------ehhchh-----------------hh---------------hhhh----cCCCCCcccchHHhhhhcCCCcceeE
Q 002276 582 ------VEWGMH-----------------KE---------------QAMA----SGSSRKNSKLTHLLQDSLGGDSKTLM 619 (943)
Q Consensus 582 ------~~~lVD-----------------kE---------------sALa----~~sPyRdSKLTrLLQDSLGGNSKTlM 619 (943)
..++|| +| .||+ .++||||||||+||||||||||+|+|
T Consensus 247 ~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGnskt~m 326 (372)
T 3b6u_A 247 NHIRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQDSLGGNAKTVM 326 (372)
T ss_dssp CCEEEEEEEEEECCCCCE----------EEEGGGCCHHHHHHHHHHHHHHCC---CCCGGGSHHHHHTTTTTTSSSEEEE
T ss_pred cceEEEEEEEEECCCCccccccCcchhhhhhHhhhhhhHHHHHHHHHHHhcCCCCCCcccccHHHHHHHHhcCCCccEEE
Confidence 235666 11 2443 36899999999999999999999999
Q ss_pred EEecCCCCcChHhhHHHHHHHhHhhccccccccccCChHHH
Q 002276 620 FVQISPNENDLSETLCSLNFASRVRGIELGAAKKQLDTSEL 660 (943)
Q Consensus 620 Iv~ISPs~~~~~ETLsTLrFAsRak~Ik~~~~~~~~~~~el 660 (943)
|+||||+..+++||++||+||+||++|++.|..|+.+...+
T Consensus 327 Ia~vsP~~~~~~ETlsTLrfA~rak~I~n~~~~n~~~~~~~ 367 (372)
T 3b6u_A 327 VANVGPASYNVEETLTTLRYANRAKNIKNKPRVNEDPKDAL 367 (372)
T ss_dssp EEEECCBGGGHHHHHHHHHHHHHHTTCBCCCCCCC------
T ss_pred EEEeCCcccCHHHHHHHHHHHHHHhhccccceecCChHHHH
Confidence 99999999999999999999999999999999998765443
No 11
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=100.00 E-value=5e-74 Score=635.15 Aligned_cols=290 Identities=37% Similarity=0.554 Sum_probs=224.8
Q ss_pred HhhcCCEEEEEEeCCCCchhhccCCeeEEeeeccCCC--eEEEEeCC--cCceeeecceeeCCCCCcccccccchhhHHH
Q 002276 359 LELKGNIRVFCRCRPLNSEETAAGSVMAVDFESVRDG--ELTVISNG--APKKTFKFDAVFGPQADQVDVFQDTAPFANS 434 (943)
Q Consensus 359 qELKGNIRV~~RVRPl~~~E~~~g~~~~V~~~s~~d~--~i~v~~~g--~~~ktF~FD~VF~~~asQeeVFeev~pLV~s 434 (943)
++|||||||||||||++..|...+...++.......+ .+.+.... ...+.|+||+||+++++|++||+++.|+|++
T Consensus 1 m~lkgnIrV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~vf~~v~~lv~~ 80 (349)
T 3t0q_A 1 MALRGNIRVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNEGRILSYNFQFDMIFEPSHTNKEIFEEIRQLVQS 80 (349)
T ss_dssp ----CEEEEEEEECCCCTTSCCCCTTEEECCCBC--CBEEEEEEECC--CEEEEEEESEEECTTCCHHHHHHHHHHHHHG
T ss_pred CCCCCCcEEEEEeCCCCccccccCceEEEeeccCCCCceEEEEcCCCCcccceeeecCEEECCCccHHHHHHHHHHHHHH
Confidence 4799999999999999999887766666654322222 34443322 2357899999999999999999999999999
Q ss_pred hhCCcceEEEeeCcccCccccccccCCCCCCccHHhHHHHHHHHHh-hcccceeEEEEEEEEEecchhhhccccCCCCC-
Q 002276 435 VLDGYNVCIFAYGQTGTGKTFTMEGTKEARGVNFRTLEELFRIIKE-REKLYRYDISVSVLEVYNEQIRDLLAVGSQPG- 512 (943)
Q Consensus 435 vLdGyNvcIFAYGQTGSGKTyTM~G~~e~~GIIPRal~~LF~~i~~-~~~~~~y~V~VSflEIYNE~I~DLL~~~~~~~- 512 (943)
+++|||+||||||||||||||||+|+ ++|||||++++||+.+.. ....|.|.|+|||+|||||+|+|||.+.....
T Consensus 81 ~l~G~n~tifAYGqTGSGKTyTm~g~--~~Giipr~~~~lF~~~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~ 158 (349)
T 3t0q_A 81 SLDGYNVCIFAYGQTGSGKTYTMLNA--GDGMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDN 158 (349)
T ss_dssp GGTTCEEEEEEECSTTSSHHHHHHST--TTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTC-------
T ss_pred HHCCcceeEEEeCCCCCCCceEeCCC--CCchhhHHHHHHHHHHHHhhhcCceeEEEEEEEEEEcchhhccccccccccc
Confidence 99999999999999999999999997 469999999999999987 44568999999999999999999998654211
Q ss_pred ----CCcccceEEeCC-CCceEcCCceEEEecChHHHHHHHHccccccccccCCCccCCCCceeeEEEEEEEEe------
Q 002276 513 ----AVSKRLEVRQAG-EGMHHVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRREL------ 581 (943)
Q Consensus 513 ----~~~k~LeIred~-~g~v~V~gLtev~V~S~eE~~~lL~~G~k~R~~asT~mN~~SSRSHsIftI~V~~~~------ 581 (943)
.....+.|++++ .++++|+||+++.|.|++|++.+|..|.++|++++|.||++|||||+||+|.|.+.+
T Consensus 159 ~~~~~~~~~~~i~~~~~~~g~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~ 238 (349)
T 3t0q_A 159 IDEILDSQKHDIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNLHTGET 238 (349)
T ss_dssp --------CCCEEEETTTTEEEETTCCCEECCCHHHHHHHHHHC------------CTGGGSEEEEEEEEEEEETTTCCE
T ss_pred cccccccccceeEEecCCCCEEEeCCEEEEeCCHHHHHHHHHHHHHhCcccccccccccCCcceEEEEEEEEEecCCCCe
Confidence 123567888876 467999999999999999999999999999999999999999999999999997654
Q ss_pred ---ehhchh-----------------hh---------------hhhh------cCCCCCcccchHHhhhhcCCCcceeEE
Q 002276 582 ---VEWGMH-----------------KE---------------QAMA------SGSSRKNSKLTHLLQDSLGGDSKTLMF 620 (943)
Q Consensus 582 ---~~~lVD-----------------kE---------------sALa------~~sPyRdSKLTrLLQDSLGGNSKTlMI 620 (943)
..++|| +| .||+ .++||||||||+||||||||||+|+||
T Consensus 239 ~~~kL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGnskt~mi 318 (349)
T 3t0q_A 239 SQGKLNLVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKRYIPFRNSKLTYLLQYSLVGDSKTLMF 318 (349)
T ss_dssp EEEEEEEEECCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCCCGGGSHHHHHHGGGSSTTCEEEEE
T ss_pred eEEEEEEEeCCCCCccccccCccccchhHHhhhHhHHHHHHHHHHHhcccCCCCcCCCcCCHHHHHHHHhcCCCceEEEE
Confidence 235666 12 2342 268999999999999999999999999
Q ss_pred EecCCCCcChHhhHHHHHHHhHhhcccccc
Q 002276 621 VQISPNENDLSETLCSLNFASRVRGIELGA 650 (943)
Q Consensus 621 v~ISPs~~~~~ETLsTLrFAsRak~Ik~~~ 650 (943)
|||||+..+++||++||+||+||++|+.++
T Consensus 319 ~~vsP~~~~~~ETl~TL~fA~rv~~ik~~~ 348 (349)
T 3t0q_A 319 VNIPPDPNHISETLNSLRFASKVNSTKIAK 348 (349)
T ss_dssp EEECCCGGGHHHHHHHHHHHHHHHC-----
T ss_pred EEeCCchhhHHHHHHHHHHHHHhhhcccCC
Confidence 999999999999999999999999998764
No 12
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1.7e-74 Score=645.45 Aligned_cols=294 Identities=30% Similarity=0.468 Sum_probs=222.7
Q ss_pred HHHhhcCCEEEEEEeCCCCchhhccCCeeEEeeeccCCCeEEEEe--CCcCceeeecceeeCCCCCcccccccch-hhHH
Q 002276 357 KVLELKGNIRVFCRCRPLNSEETAAGSVMAVDFESVRDGELTVIS--NGAPKKTFKFDAVFGPQADQVDVFQDTA-PFAN 433 (943)
Q Consensus 357 ~lqELKGNIRV~~RVRPl~~~E~~~g~~~~V~~~s~~d~~i~v~~--~g~~~ktF~FD~VF~~~asQeeVFeev~-pLV~ 433 (943)
.....+|||||+|||||++..|...+...++... ++..+.+.. +....+.|+||+||+++++|++||+.+. |+|+
T Consensus 15 ~~~~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~--~~~~~~i~~~~~~~~~~~f~FD~Vf~~~~tQ~~Vy~~~~~plv~ 92 (388)
T 3bfn_A 15 YFQGPPARVRVAVRLRPFVDGTAGASDPPCVRGM--DSCSLEIANWRNHQETLKYQFDAFYGERSTQQDIYAGSVQPILR 92 (388)
T ss_dssp CSSSCCCCCEEEEEECCCC-------------------------------CEEEEECSEEECTTCCHHHHHHHHTGGGHH
T ss_pred cccCCCCCEEEEEECCCCChhhhccCCCceEEec--CCCeEEEecCCCCCCeeEEEcceEecCCCCHhHHHHHHHHHHHH
Confidence 4567899999999999999988765544444321 122333322 2234578999999999999999999754 9999
Q ss_pred HhhCCcceEEEeeCcccCccccccccCCCCCCccHHhHHHHHHHHHhh---cccceeEEEEEEEEEecchhhhccccCCC
Q 002276 434 SVLDGYNVCIFAYGQTGTGKTFTMEGTKEARGVNFRTLEELFRIIKER---EKLYRYDISVSVLEVYNEQIRDLLAVGSQ 510 (943)
Q Consensus 434 svLdGyNvcIFAYGQTGSGKTyTM~G~~e~~GIIPRal~~LF~~i~~~---~~~~~y~V~VSflEIYNE~I~DLL~~~~~ 510 (943)
++|+|||+||||||||||||||||+|+++++|||||++.+||..+... ...+.|.|+|||+|||||+|+|||++..
T Consensus 93 ~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~Giipra~~~lF~~i~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~- 171 (388)
T 3bfn_A 93 HLLEGQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPAS- 171 (388)
T ss_dssp HHTTTCCEEEEEESCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHTSTTCSEEEEEEEEEEEEETTEEEESSSCSS-
T ss_pred HhhcCceeeEeeecCCCCCCCeEeecCccccchhHHHHHHHHHHHHHhhccCCCceEEEEEEEEEEECCeeeehhccCC-
Confidence 999999999999999999999999999999999999999999999863 3458999999999999999999997643
Q ss_pred CCCCcccceEEeCCCCceEcCCceEEEecChHHHHHHHHccccccccccCCCccCCCCceeeEEEEEEEEe---------
Q 002276 511 PGAVSKRLEVRQAGEGMHHVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRREL--------- 581 (943)
Q Consensus 511 ~~~~~k~LeIred~~g~v~V~gLtev~V~S~eE~~~lL~~G~k~R~~asT~mN~~SSRSHsIftI~V~~~~--------- 581 (943)
..+.|++++.++++|.||+++.|.|++|++.+|..|.++|++++|.||.+|||||+||+|.|....
T Consensus 172 -----~~l~ired~~~~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~ 246 (388)
T 3bfn_A 172 -----GDLVIREDCRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHAVLLVKVDQRERLAPFRQRE 246 (388)
T ss_dssp -----CBCCCEECTTSCEECTTCCCEECCSHHHHHHHHHHHTC-----------CGGGSEEEEEEEEEEEESSTTCCEEE
T ss_pred -----CCceEEEcCCCCEEeccceEEEeCCHHHHHHHHHHHhhccccccccCCCCCCCCeEEEEEEEEEeccCCCCceeE
Confidence 468999999999999999999999999999999999999999999999999999999999997642
Q ss_pred -ehhchh-----------------hh---------------hhhh---cCCCCCcccchHHhhhhcCCCcceeEEEecCC
Q 002276 582 -VEWGMH-----------------KE---------------QAMA---SGSSRKNSKLTHLLQDSLGGDSKTLMFVQISP 625 (943)
Q Consensus 582 -~~~lVD-----------------kE---------------sALa---~~sPyRdSKLTrLLQDSLGGNSKTlMIv~ISP 625 (943)
..++|| +| .||. .++||||||||+||||||||||+|+||+||||
T Consensus 247 skL~lVDLAGSEr~~~t~~~g~rlkE~~~INkSL~aLg~vI~aL~~~~~hVPYRdSkLTrlLqdsLgGnskT~mIa~iSP 326 (388)
T 3bfn_A 247 GKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKVVDALNQGLPRVPYRDSKLTRLLQDSLGGSAHSILIANIAP 326 (388)
T ss_dssp EEEEEEECCCTTC--------------CCCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTTTSSSTTCEEEEEEEECC
T ss_pred EEEEEEECCCCcccccccCccchhHHHhHhhhhHHHHHHHHHHHhcCCCCCcCcccHHHHHHHHhhCCCccEEEEEEECC
Confidence 235666 12 2333 36899999999999999999999999999999
Q ss_pred CCcChHhhHHHHHHHhHhhccccccccccCChH
Q 002276 626 NENDLSETLCSLNFASRVRGIELGAAKKQLDTS 658 (943)
Q Consensus 626 s~~~~~ETLsTLrFAsRak~Ik~~~~~~~~~~~ 658 (943)
+..+++||++||+||+||++|++.|.+|+....
T Consensus 327 ~~~~~~ETlsTLrfA~rak~I~n~p~~n~~~~~ 359 (388)
T 3bfn_A 327 ERRFYLDTVSALNFAARSKEVINRPFTNESLQP 359 (388)
T ss_dssp SGGGHHHHHHHHHHHCSEEEEC-----------
T ss_pred ccccHHHHHHHHHHHHHHhhCcCcCcccCCCCH
Confidence 999999999999999999999999998876543
No 13
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=100.00 E-value=1.2e-73 Score=633.32 Aligned_cols=287 Identities=37% Similarity=0.574 Sum_probs=254.4
Q ss_pred cCCEEEEEEeCCCCchhhccCCeeEEeeeccCCCeEEEEeCCcCceeeecceeeCCCCCcccccccc-hhhHHHhhCCcc
Q 002276 362 KGNIRVFCRCRPLNSEETAAGSVMAVDFESVRDGELTVISNGAPKKTFKFDAVFGPQADQVDVFQDT-APFANSVLDGYN 440 (943)
Q Consensus 362 KGNIRV~~RVRPl~~~E~~~g~~~~V~~~s~~d~~i~v~~~g~~~ktF~FD~VF~~~asQeeVFeev-~pLV~svLdGyN 440 (943)
.|||||+|||||++..|...+...++.+.. +..+.+ ......+.|.||+||+++++|++||+.+ .|+|+++++|||
T Consensus 5 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~--~~~~~~-~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n 81 (355)
T 1goj_A 5 ANSIKVVARFRPQNRVEIESGGQPIVTFQG--PDTCTV-DSKEAQGSFTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYN 81 (355)
T ss_dssp SCBCEEEEEECCCCHHHHTTTCCBCEEECS--TTEEEE-CSTTCCEEEECSEEECTTCCHHHHHHHHTHHHHHHHTTTCC
T ss_pred CCCeEEEEECCCCChHHhhcCCceEEEEcC--CCeEEE-ccCCCccEEeeCeEECCCCccHHHHHHHHHHHHHHHhCCCc
Confidence 689999999999999998877777776643 233333 3334568999999999999999999975 499999999999
Q ss_pred eEEEeeCcccCccccccccC----CCCCCccHHhHHHHHHHHHhhcccceeEEEEEEEEEecchhhhccccCCCCCCCcc
Q 002276 441 VCIFAYGQTGTGKTFTMEGT----KEARGVNFRTLEELFRIIKEREKLYRYDISVSVLEVYNEQIRDLLAVGSQPGAVSK 516 (943)
Q Consensus 441 vcIFAYGQTGSGKTyTM~G~----~e~~GIIPRal~~LF~~i~~~~~~~~y~V~VSflEIYNE~I~DLL~~~~~~~~~~k 516 (943)
+||||||||||||||||+|+ ++.+|||||++++||..+......+.|.|+|||+|||||+|+|||++.. .
T Consensus 82 ~tifAYGqTGSGKTyTm~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~------~ 155 (355)
T 1goj_A 82 GTVFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQN------D 155 (355)
T ss_dssp EEEEEECSTTSSHHHHHTBSCTTSTTTBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSTTC------C
T ss_pred ceEEEECCCCCCcceEeecCCCCCcccCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEECCEEEEcccCcc------C
Confidence 99999999999999999996 3568999999999999998877778999999999999999999998643 4
Q ss_pred cceEEeCCCCceEcCCceEEEecChHHHHHHHHccccccccccCCCccCCCCceeeEEEEEEEEe---------ehhchh
Q 002276 517 RLEVRQAGEGMHHVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRREL---------VEWGMH 587 (943)
Q Consensus 517 ~LeIred~~g~v~V~gLtev~V~S~eE~~~lL~~G~k~R~~asT~mN~~SSRSHsIftI~V~~~~---------~~~lVD 587 (943)
.+.|++++.++++|.||+++.|.|++|++++|..|.++|++++|.||.+|||||+||+|.|.... ..++||
T Consensus 156 ~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skL~lVD 235 (355)
T 1goj_A 156 NLPVHEEKNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVITITQKNVETGSAKSGQLFLVD 235 (355)
T ss_dssp SCCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEEEEEEEEETTTTEEEEEEEEEEE
T ss_pred CceeEEcCCCCEeecCCEEEeCCCHHHHHHHHHHHHhhcCcccccCCCCCCCceEEEEEEEEEeccCCCceeeeEEEEEE
Confidence 68999999999999999999999999999999999999999999999999999999999997653 235666
Q ss_pred -----------------hh---------------hhhh----cCCCCCcccchHHhhhhcCCCcceeEEEecCCCCcChH
Q 002276 588 -----------------KE---------------QAMA----SGSSRKNSKLTHLLQDSLGGDSKTLMFVQISPNENDLS 631 (943)
Q Consensus 588 -----------------kE---------------sALa----~~sPyRdSKLTrLLQDSLGGNSKTlMIv~ISPs~~~~~ 631 (943)
+| .||+ .++||||||||+||||||||||+|+||+||||+..+++
T Consensus 236 LAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~hvPyRdSkLT~lLqdsLgGns~t~mI~~isP~~~~~~ 315 (355)
T 1goj_A 236 LAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRDSKLTRILQESLGGNSRTTLIINCSPSSYNDA 315 (355)
T ss_dssp CCCCSCCTTSSSCCCCTTTTGGGTSHHHHHHHHHHHHHHCSCSCCCGGGCHHHHHTGGGTTSSCEEEEEEEECCBGGGHH
T ss_pred CCCCCcccccccchhhHHHHHhhhhHHHHHHHHHHHHhcCCCCCCCCccCHHHHHHHHHhCCCCcEEEEEEECcccccHH
Confidence 12 2333 36899999999999999999999999999999999999
Q ss_pred hhHHHHHHHhHhhccccccccccCCh
Q 002276 632 ETLCSLNFASRVRGIELGAAKKQLDT 657 (943)
Q Consensus 632 ETLsTLrFAsRak~Ik~~~~~~~~~~ 657 (943)
||++||+||+||+.|++.|.+|....
T Consensus 316 ETl~TL~fA~rak~I~n~~~vn~~~~ 341 (355)
T 1goj_A 316 ETLSTLRFGMRAKSIKNKAKVNAELS 341 (355)
T ss_dssp HHHHHHHHHHHHHTCBCCCCCCSSSS
T ss_pred HHHHHHHHHHHHhhccCCceeCCCCC
Confidence 99999999999999999999887643
No 14
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=100.00 E-value=3.7e-73 Score=628.08 Aligned_cols=286 Identities=33% Similarity=0.483 Sum_probs=247.5
Q ss_pred cCCEEEEEEeCCCCchhhccCCeeEEeeeccCCCeEEEEeCCcCceeeecceeeCCCCCcccccccch-hhHHHhhCCcc
Q 002276 362 KGNIRVFCRCRPLNSEETAAGSVMAVDFESVRDGELTVISNGAPKKTFKFDAVFGPQADQVDVFQDTA-PFANSVLDGYN 440 (943)
Q Consensus 362 KGNIRV~~RVRPl~~~E~~~g~~~~V~~~s~~d~~i~v~~~g~~~ktF~FD~VF~~~asQeeVFeev~-pLV~svLdGyN 440 (943)
.|||||+|||||++..|...+...++.+... +..+.. . ...+.|.||+||+++++|++||+.++ |+|+++++|||
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~-~~~i~~-~--~~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~G~n 78 (349)
T 1t5c_A 3 EGAVAVCVRVRPLNSREESLGETAQVYWKTD-NNVIYQ-V--DGSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYN 78 (349)
T ss_dssp CCCEEEEEEECCCSCSSCTTTTCCCCCEEEE-TTEEEE-T--TSSCEEECSCEECTTSCHHHHHHHTTHHHHHHHHTTCC
T ss_pred CCCEEEEEECCCCChhhhccCCCcEEEEeCC-CCeEEE-C--CCCeEEECCEEECCCCCHHHHHHHHHHHHHHHHHcCCc
Confidence 6999999999999998887665444443322 222221 1 23578999999999999999999986 99999999999
Q ss_pred eEEEeeCcccCccccccccCCCCCCccHHhHHHHHHHHHhhcccceeEEEEEEEEEecchhhhccccCCCCCCCcccceE
Q 002276 441 VCIFAYGQTGTGKTFTMEGTKEARGVNFRTLEELFRIIKEREKLYRYDISVSVLEVYNEQIRDLLAVGSQPGAVSKRLEV 520 (943)
Q Consensus 441 vcIFAYGQTGSGKTyTM~G~~e~~GIIPRal~~LF~~i~~~~~~~~y~V~VSflEIYNE~I~DLL~~~~~~~~~~k~LeI 520 (943)
+||||||||||||||||+|+++++|||||++++||..++... .+.|.|+|||+|||||+|+|||++.. ....|.|
T Consensus 79 ~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~-~~~~~v~vS~~EIYnE~i~DLL~~~~----~~~~l~i 153 (349)
T 1t5c_A 79 GTIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKFP-DREFLLRVSYMEIYNETITDLLCGTQ----KMKPLII 153 (349)
T ss_dssp EEEEEEESTTSSHHHHHTBCSSSBCHHHHHHHHHHHHGGGCT-TEEEEEEEEEEEEETTEEEESSSSSC----TTCCEEE
T ss_pred cceeeecCCCCCCCeEEecCCCCCchHHHHHHHHHHHHHhCc-CCcEEEEEEEEEEeCCEEEEccCCCC----CCCCceE
Confidence 999999999999999999999999999999999999997654 47899999999999999999998653 2357999
Q ss_pred EeCCCCceEcCCceEEEecChHHHHHHHHccccccccccCCCccCCCCceeeEEEEEEEEe--------------ehhch
Q 002276 521 RQAGEGMHHVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRREL--------------VEWGM 586 (943)
Q Consensus 521 red~~g~v~V~gLtev~V~S~eE~~~lL~~G~k~R~~asT~mN~~SSRSHsIftI~V~~~~--------------~~~lV 586 (943)
++++.++++|.||+++.|.|++|++.+|..|.++|++++|.||.+|||||+||+|.|.... ..++|
T Consensus 154 ~ed~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~~~~~~skL~lV 233 (349)
T 1t5c_A 154 REDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIFRMILESREKGEPSNCEGSVKVSHLNLV 233 (349)
T ss_dssp EETTTTEEEETTCCCEECSSHHHHHHHHHHHHHTTSSSSSSSSCTTTTCEEEEEEEEEEEECC-------CEEEEEEEEE
T ss_pred EECCCCCEEecCCEEEEeCCHHHHHHHHHHhhcccccccccCCCCCCCceEEEEEEEEEeccCCCcCcCccEEEEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999986542 23566
Q ss_pred h-----------------hh---------------hhhh-----cCCCCCcccchHHhhhhcCCCcceeEEEecCCCCcC
Q 002276 587 H-----------------KE---------------QAMA-----SGSSRKNSKLTHLLQDSLGGDSKTLMFVQISPNEND 629 (943)
Q Consensus 587 D-----------------kE---------------sALa-----~~sPyRdSKLTrLLQDSLGGNSKTlMIv~ISPs~~~ 629 (943)
| +| .+|+ .++||||||||+||||||||||+|+||+||||+ +
T Consensus 234 DLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~mI~~isP~--~ 311 (349)
T 1t5c_A 234 DLAGSERAAQTGAAGVRLKEGCNINRSLFILGQVIKKLSDGQVGGFINYRDSKLTRILQNSLGGNAKTRIICTITPV--S 311 (349)
T ss_dssp ECCCGGGTC-------CCCSSSCCCHHHHHHHHHHHHHHHTCCTTSSCGGGSHHHHHTGGGTTSSSEEEEEEEECTT--C
T ss_pred ECCCCccccccCCccccchhhhHHhHHHHHHHHHHHHHhccCCCCCCcccccHHHHHHHHhcCCCceEEEEEEeCCC--C
Confidence 6 11 2332 358999999999999999999999999999997 6
Q ss_pred hHhhHHHHHHHhHhhccccccccccCChH
Q 002276 630 LSETLCSLNFASRVRGIELGAAKKQLDTS 658 (943)
Q Consensus 630 ~~ETLsTLrFAsRak~Ik~~~~~~~~~~~ 658 (943)
++||++||+||+||++|++.|.+|+....
T Consensus 312 ~~ETlsTL~fA~rak~I~n~~~vn~~~~~ 340 (349)
T 1t5c_A 312 FDETLTALQFASTAKYMKNTPYVNEVSTD 340 (349)
T ss_dssp SHHHHHHHHHHHHHTTCCCCCCCCEEC--
T ss_pred HHHHHHHHHHHHHHhhcccCceeccCCCC
Confidence 99999999999999999999999887543
No 15
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=100.00 E-value=4.2e-73 Score=627.29 Aligned_cols=289 Identities=38% Similarity=0.582 Sum_probs=224.7
Q ss_pred hcCCEEEEEEeCCCCc-hhhccCCeeEEeeeccCCC--eEEEEe--CCcCceeeecceeeCCCCCcccccccchhhHHHh
Q 002276 361 LKGNIRVFCRCRPLNS-EETAAGSVMAVDFESVRDG--ELTVIS--NGAPKKTFKFDAVFGPQADQVDVFQDTAPFANSV 435 (943)
Q Consensus 361 LKGNIRV~~RVRPl~~-~E~~~g~~~~V~~~s~~d~--~i~v~~--~g~~~ktF~FD~VF~~~asQeeVFeev~pLV~sv 435 (943)
|||||||||||||++. .|........+.......+ .+.+.. +....+.|+||+||+++++|++||+++.|+|+++
T Consensus 1 lk~nIrV~vRvRP~~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~v~~lv~~~ 80 (347)
T 1f9v_A 1 MRGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKEVGQLVQSS 80 (347)
T ss_dssp --CEEEEEEEECCCCTTTCCCTTEEEEECCCBTTTTBEEEEEEEGGGTTCEEEEEESEEECTTCCHHHHHHHHHHHHGGG
T ss_pred CCCCeEEEEEeCCCCcccccCCCceEEEecccCCCCceEEEEecCCCCcCceEEeeCEEECCCCCHHHHHHHHHHHHHHh
Confidence 7899999999999987 4433322222322111122 344433 2234689999999999999999999999999999
Q ss_pred hCCcceEEEeeCcccCccccccccCCCCCCccHHhHHHHHHHHHhh-cccceeEEEEEEEEEecchhhhccccCCCCC--
Q 002276 436 LDGYNVCIFAYGQTGTGKTFTMEGTKEARGVNFRTLEELFRIIKER-EKLYRYDISVSVLEVYNEQIRDLLAVGSQPG-- 512 (943)
Q Consensus 436 LdGyNvcIFAYGQTGSGKTyTM~G~~e~~GIIPRal~~LF~~i~~~-~~~~~y~V~VSflEIYNE~I~DLL~~~~~~~-- 512 (943)
|+|||+||||||||||||||||+|+ ++|||||++++||..+... ...+.|.|+|||+|||||+|+|||++.....
T Consensus 81 l~G~n~tifAYGqTGSGKTyTM~G~--~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~ 158 (347)
T 1f9v_A 81 LDGYNVCIFAYGQTGSGKTFTMLNP--GDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKED 158 (347)
T ss_dssp GGTCCEEEEEECCTTSSHHHHHHST--TTSHHHHHHHHHHHHHHHHGGGTCEEEEEEEEEEEETTEEEETTC--------
T ss_pred cCCceeEEEEECCCCCCCcEeccCC--CCCchHHHHHHHHHHHHhhhhcCCceEEEEEEEEEECCeeeeccCCccccccc
Confidence 9999999999999999999999996 5799999999999999874 4568999999999999999999998764311
Q ss_pred -CCcccceEEeCC-CCceEcCCceEEEecChHHHHHHHHccccccccccCCCccCCCCceeeEEEEEEEEe---------
Q 002276 513 -AVSKRLEVRQAG-EGMHHVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRREL--------- 581 (943)
Q Consensus 513 -~~~k~LeIred~-~g~v~V~gLtev~V~S~eE~~~lL~~G~k~R~~asT~mN~~SSRSHsIftI~V~~~~--------- 581 (943)
....++.|++++ .++++|.||+++.|.|++|++.+|..|.++|++++|.||++|||||+||+|.|.+.+
T Consensus 159 ~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~s 238 (347)
T 1f9v_A 159 TSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASNEHSSASHSIFIIHLSGSNAKTGAHSYG 238 (347)
T ss_dssp -----CCCEEEETTTTEEEETTCCCEECSSGGGHHHHHHHHC-----------CCGGGSEEEEEEEEEEECC--CCEEEE
T ss_pred cccCCceeEEEecCCCceEecCCEEEEcCCHHHHHHHHHHHHhccceeeccCCCCCCCceEEEEEEEEEecCCCCceeee
Confidence 113467888764 578999999999999999999999999999999999999999999999999997643
Q ss_pred ehhchh-----------------hh---------------hhhh------cCCCCCcccchHHhhhhcCCCcceeEEEec
Q 002276 582 VEWGMH-----------------KE---------------QAMA------SGSSRKNSKLTHLLQDSLGGDSKTLMFVQI 623 (943)
Q Consensus 582 ~~~lVD-----------------kE---------------sALa------~~sPyRdSKLTrLLQDSLGGNSKTlMIv~I 623 (943)
..++|| +| .||+ .++||||||||+||||||||||+|+||+||
T Consensus 239 kL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hiPyRdSkLT~lLqdsLgGnskt~mI~~v 318 (347)
T 1f9v_A 239 TLNLVDLAGSERINVSQVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQYSLTGDSKTLMFVNI 318 (347)
T ss_dssp EEEEEECCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHTSCC---CCCCGGGSHHHHHHHHHHSTTCEEEEEEEE
T ss_pred EEEEEECCCCccccccccchhhhHHHHHHhHHHHHHHHHHHHHhcccCCCCcCccccCHHHHHHHHHhCCCccEEEEEEe
Confidence 235666 12 2332 468999999999999999999999999999
Q ss_pred CCCCcChHhhHHHHHHHhHhhccccccc
Q 002276 624 SPNENDLSETLCSLNFASRVRGIELGAA 651 (943)
Q Consensus 624 SPs~~~~~ETLsTLrFAsRak~Ik~~~~ 651 (943)
||+..+++||++||+||+||++|++++.
T Consensus 319 sP~~~~~~ETl~TLrfA~r~~~i~~~~r 346 (347)
T 1f9v_A 319 SPSSSHINETLNSLRFASKVNSTRLVSR 346 (347)
T ss_dssp CCSGGGHHHHHHHHHHHHHHCCTTTC--
T ss_pred CCccccHHHHHHHHHHHHHHhhhccCCC
Confidence 9999999999999999999999998864
No 16
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=100.00 E-value=1.7e-73 Score=632.86 Aligned_cols=289 Identities=38% Similarity=0.591 Sum_probs=245.3
Q ss_pred hhcCCEEEEEEeCCCCchhhccCCeeEEeeeccCCCeEEEEeC----CcCceeeecceeeCCCCCcccccccch-hhHHH
Q 002276 360 ELKGNIRVFCRCRPLNSEETAAGSVMAVDFESVRDGELTVISN----GAPKKTFKFDAVFGPQADQVDVFQDTA-PFANS 434 (943)
Q Consensus 360 ELKGNIRV~~RVRPl~~~E~~~g~~~~V~~~s~~d~~i~v~~~----g~~~ktF~FD~VF~~~asQeeVFeev~-pLV~s 434 (943)
+.+|||||+|||||++..|...+...++.+++. ...+.+... ....+.|+||+||+++++|++||+++. |+|++
T Consensus 5 ~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~-~~~v~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~ 83 (359)
T 1x88_A 5 EKGKNIQVVVRCRPFNLAERKASAHSIVECDPV-RKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVVCPILDE 83 (359)
T ss_dssp ----CCEEEEEECCCCHHHHHTTCCCCEEEETT-TTEEEEEEEEETTEEEEEEEECSEEECTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCChhhhhcCCceEEEEcCC-CcEEEEeCCCccCCcCceEEeceEEEeccCchhHHHHHHHHHhHHH
Confidence 567999999999999999988777777766543 334444321 223578999999999999999999976 99999
Q ss_pred hhCCcceEEEeeCcccCccccccccCCC-----------CCCccHHhHHHHHHHHHhhcccceeEEEEEEEEEecchhhh
Q 002276 435 VLDGYNVCIFAYGQTGTGKTFTMEGTKE-----------ARGVNFRTLEELFRIIKEREKLYRYDISVSVLEVYNEQIRD 503 (943)
Q Consensus 435 vLdGyNvcIFAYGQTGSGKTyTM~G~~e-----------~~GIIPRal~~LF~~i~~~~~~~~y~V~VSflEIYNE~I~D 503 (943)
+|+|||+||||||||||||||||+|+.. .+|||||++++||+.+.. ..+.|.|+|||+|||||+|+|
T Consensus 84 ~l~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~--~~~~~~v~vS~~EIYnE~i~D 161 (359)
T 1x88_A 84 VIMGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTD--NGTEFSVKVSLLEIYNEELFD 161 (359)
T ss_dssp HHTTCEEEEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCHHHHHHHHHHHHTSS--SSEEEEEEEEEEEEETTEEEE
T ss_pred HhCCCceEEEEeCCCCCCCceEEeccCCccccccccccccCCchHHHHHHHHHHHhc--cCceEEEEEEEEEEeCceeee
Confidence 9999999999999999999999999753 369999999999998865 457999999999999999999
Q ss_pred ccccCCCCCCCcccceEEeCCC--CceEcCCceEEEecChHHHHHHHHccccccccccCCCccCCCCceeeEEEEEEEEe
Q 002276 504 LLAVGSQPGAVSKRLEVRQAGE--GMHHVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRREL 581 (943)
Q Consensus 504 LL~~~~~~~~~~k~LeIred~~--g~v~V~gLtev~V~S~eE~~~lL~~G~k~R~~asT~mN~~SSRSHsIftI~V~~~~ 581 (943)
||++... ...++.|++++. ++++|.||+++.|.|++|++.+|..|.++|++++|.||.+|||||+||+|.|....
T Consensus 162 LL~~~~~---~~~~l~i~~~~~~~~~v~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~ 238 (359)
T 1x88_A 162 LLNPSSD---VSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKE 238 (359)
T ss_dssp TTCTTSC---TTCCBEEEEETTEEEEEEEETCCCEEECSGGGHHHHHHHHHHHHHHHHHHSTTHHHHCEEEEEEEEEEEE
T ss_pred hhccccc---ccccceEEeccCCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccccCCCCCCCccEEEEEEEEEec
Confidence 9987542 235799999874 78999999999999999999999999999999999999999999999999986532
Q ss_pred ------------ehhchh-----------------hh---------------hhhh---cCCCCCcccchHHhhhhcCCC
Q 002276 582 ------------VEWGMH-----------------KE---------------QAMA---SGSSRKNSKLTHLLQDSLGGD 614 (943)
Q Consensus 582 ------------~~~lVD-----------------kE---------------sALa---~~sPyRdSKLTrLLQDSLGGN 614 (943)
..++|| +| .||+ .++||||||||+|||||||||
T Consensus 239 ~~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGn 318 (359)
T 1x88_A 239 TTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKLTRILQDSLGGR 318 (359)
T ss_dssp ECTTSCEEEEEEEEEEEECCCCCC---------------CCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHTGGGSSSS
T ss_pred ccCCCCceEEEEEEEEEcCCCCCcccccCCcccchHHHhhhhHHHHHHHHHHHHHhcCCCCCccccchHHHHHHHHhCCC
Confidence 235666 12 2333 468999999999999999999
Q ss_pred cceeEEEecCCCCcChHhhHHHHHHHhHhhcccccccccc
Q 002276 615 SKTLMFVQISPNENDLSETLCSLNFASRVRGIELGAAKKQ 654 (943)
Q Consensus 615 SKTlMIv~ISPs~~~~~ETLsTLrFAsRak~Ik~~~~~~~ 654 (943)
|+|+||+||||+..+++||++||+||+||++|++.|.+|+
T Consensus 319 skt~mIa~vsP~~~~~~ETl~TLrfA~rak~I~n~p~vn~ 358 (359)
T 1x88_A 319 TRTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 358 (359)
T ss_dssp SEEEEEEEECCCGGGHHHHHHHHHHHHHHTTCCCCCC---
T ss_pred CeEEEEEEECCCcccHHHHHHHHHHHHHHhhccCcceeCC
Confidence 9999999999999999999999999999999999998875
No 17
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=100.00 E-value=6.1e-73 Score=629.89 Aligned_cols=285 Identities=32% Similarity=0.526 Sum_probs=240.0
Q ss_pred cCCEEEEEEeCCCCchhhccCCeeEEeeeccCCCeEEEEeCC---cCceeeecceeeCCC--------CCcccccccch-
Q 002276 362 KGNIRVFCRCRPLNSEETAAGSVMAVDFESVRDGELTVISNG---APKKTFKFDAVFGPQ--------ADQVDVFQDTA- 429 (943)
Q Consensus 362 KGNIRV~~RVRPl~~~E~~~g~~~~V~~~s~~d~~i~v~~~g---~~~ktF~FD~VF~~~--------asQeeVFeev~- 429 (943)
.+||||+|||||++..|...+..+++.+. +..+.+.... ...+.|+||+||++. ++|++||++++
T Consensus 3 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~---~~~~~i~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~asQ~~Vy~~~~~ 79 (366)
T 2zfi_A 3 GASVKVAVRVRPFNSREMSRDSKCIIQMS---GSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGE 79 (366)
T ss_dssp -CCEEEEEEECCCCHHHHHTTCCBCEEEE---TTEEEECCTTCTTSCCEEEECSEEEECSSCTTSSSCCCHHHHHHHTHH
T ss_pred CCCcEEEEECCCCChhhccCCCCeEEEEC---CCcEEEeccCCCCCCceEEecceEeecCccccccccCcHHHHHHHHHH
Confidence 47999999999999999887776666654 3344443321 236799999999987 89999999986
Q ss_pred hhHHHhhCCcceEEEeeCcccCccccccccCC--CCCCccHHhHHHHHHHHHhh-cccceeEEEEEEEEEecchhhhccc
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTFTMEGTK--EARGVNFRTLEELFRIIKER-EKLYRYDISVSVLEVYNEQIRDLLA 506 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTyTM~G~~--e~~GIIPRal~~LF~~i~~~-~~~~~y~V~VSflEIYNE~I~DLL~ 506 (943)
|+|+++|+|||+||||||||||||||||+|+. +++|||||++++||..+... ...+.|.|+|||+|||||+|+|||+
T Consensus 80 plv~~~l~G~N~tifAYGqTGSGKTyTm~G~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~v~DLL~ 159 (366)
T 2zfi_A 80 EMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLN 159 (366)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHHHTBCSGGGCBCHHHHHHHHHHHHHHTCCCTTEEEEEEEEEEEEETTEEEETTC
T ss_pred HHHHHHhcCCeeEEEEeCCCCCCCceEeeCCCccCCCccHHHHHHHHHHHHhhcccCCeeEEEEEEEEEeeCCeEEEccc
Confidence 99999999999999999999999999999984 57899999999999999874 3468999999999999999999998
Q ss_pred cCCCCCCCcccceEEeCCCCceEcCCceEEEecChHHHHHHHHccccccccccCCCccCCCCceeeEEEEEEEEe-----
Q 002276 507 VGSQPGAVSKRLEVRQAGEGMHHVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRREL----- 581 (943)
Q Consensus 507 ~~~~~~~~~k~LeIred~~g~v~V~gLtev~V~S~eE~~~lL~~G~k~R~~asT~mN~~SSRSHsIftI~V~~~~----- 581 (943)
+.. ...|.|++++.++++|.||+++.|.|++|++.+|..|.++|++++|.||+.|||||+||+|.|....
T Consensus 160 ~~~-----~~~l~ire~~~~g~~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~ 234 (366)
T 2zfi_A 160 PKN-----KGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAET 234 (366)
T ss_dssp TTT-----CSCBCEEEETTTEEEETTCCCEECCSHHHHHHHHHHHHHHHTSGGGGTTTHHHHSEEEEEEEEEEEEECTTT
T ss_pred ccc-----CCCceEEEcCCCCEEEeCCEEEEECCHHHHHHHHHHHhhccccccccCCCCCCcceEEEEEEEEEecccCCC
Confidence 653 2468999999999999999999999999999999999999999999999999999999999986532
Q ss_pred --------ehhchh-----------------hh---------------hhhh---------------cCCCCCcccchHH
Q 002276 582 --------VEWGMH-----------------KE---------------QAMA---------------SGSSRKNSKLTHL 606 (943)
Q Consensus 582 --------~~~lVD-----------------kE---------------sALa---------------~~sPyRdSKLTrL 606 (943)
..++|| +| .||+ .++||||||||+|
T Consensus 235 ~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~~~~~~~~~~~~hvPyRdSkLT~l 314 (366)
T 2zfi_A 235 NITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWL 314 (366)
T ss_dssp TCEEEEEEEEEEEECCCGGGC------CCCHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCGGGSHHHHH
T ss_pred CccceeEeEEEEEeCCCCccccccCCCccchhhhhhHhHHHHHHHHHHHHHHhcccccccccccccCCcccccccHHHHH
Confidence 235666 12 2343 3589999999999
Q ss_pred hhhhcCCCcceeEEEecCCCCcChHhhHHHHHHHhHhhcccccccccc
Q 002276 607 LQDSLGGDSKTLMFVQISPNENDLSETLCSLNFASRVRGIELGAAKKQ 654 (943)
Q Consensus 607 LQDSLGGNSKTlMIv~ISPs~~~~~ETLsTLrFAsRak~Ik~~~~~~~ 654 (943)
|||||||||+|+||+||||+..+++||++||+||+||++|++.|.++.
T Consensus 315 LqdsLgGnskt~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~~~~~~ 362 (366)
T 2zfi_A 315 LRENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVNH 362 (366)
T ss_dssp TGGGSSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHTC----------
T ss_pred HHHHhCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCCCCCCC
Confidence 999999999999999999999999999999999999999999887653
No 18
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=100.00 E-value=5.5e-73 Score=621.48 Aligned_cols=274 Identities=37% Similarity=0.579 Sum_probs=243.3
Q ss_pred hhcCCEEEEEEeCCCCchhhccCCeeEEeeeccCCCeEEEEeCCcCceeeecceeeCCCCCcccccccch-hhHHHhhCC
Q 002276 360 ELKGNIRVFCRCRPLNSEETAAGSVMAVDFESVRDGELTVISNGAPKKTFKFDAVFGPQADQVDVFQDTA-PFANSVLDG 438 (943)
Q Consensus 360 ELKGNIRV~~RVRPl~~~E~~~g~~~~V~~~s~~d~~i~v~~~g~~~ktF~FD~VF~~~asQeeVFeev~-pLV~svLdG 438 (943)
..+|||||+|||||+++.|...+...++.+.. +..+.+ ..+.|.||+||+++++|++||+++. |+|+++++|
T Consensus 4 ~~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~--~~~~~~-----~~~~f~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G 76 (325)
T 1bg2_A 4 LAECNIKVMCRFRPLNESEVNRGDKYIAKFQG--EDTVVI-----ASKPYAFDRVFQSSTSQEQVYNDCAKKIVKDVLEG 76 (325)
T ss_dssp CSSCEEEEEEEECCCCHHHHHHTCCBCCEEET--TTEEEE-----TTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTT
T ss_pred CCCCCEEEEEEcCCCChhHhccCCeeEEEECC--CCeEEE-----CCEEEECCeEeCCCCCHHHHHHHHhhhhHHHHhCC
Confidence 35799999999999999998877766665543 333333 2478999999999999999999975 999999999
Q ss_pred cceEEEeeCcccCccccccccCCC---CCCccHHhHHHHHHHHHhhcccceeEEEEEEEEEecchhhhccccCCCCCCCc
Q 002276 439 YNVCIFAYGQTGTGKTFTMEGTKE---ARGVNFRTLEELFRIIKEREKLYRYDISVSVLEVYNEQIRDLLAVGSQPGAVS 515 (943)
Q Consensus 439 yNvcIFAYGQTGSGKTyTM~G~~e---~~GIIPRal~~LF~~i~~~~~~~~y~V~VSflEIYNE~I~DLL~~~~~~~~~~ 515 (943)
||+||||||||||||||||+|+.. .+|||||++++||+.+......+.|.|+|||+|||||+|+|||++..
T Consensus 77 ~n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~------ 150 (325)
T 1bg2_A 77 YNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSK------ 150 (325)
T ss_dssp CCEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHHCSSEEEEEEEEEEEEETTEEEESSCTTC------
T ss_pred CeEEEEEECCCCCCCceEecccCCCcccCccHHHHHHHHHHHHHhccCCceEEEEEEEEEEecCeeeecccCCC------
Confidence 999999999999999999999754 45999999999999998877779999999999999999999997542
Q ss_pred ccceEEeCCCCceEcCCceEEEecChHHHHHHHHccccccccccCCCccCCCCceeeEEEEEEEEe---------ehhch
Q 002276 516 KRLEVRQAGEGMHHVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRREL---------VEWGM 586 (943)
Q Consensus 516 k~LeIred~~g~v~V~gLtev~V~S~eE~~~lL~~G~k~R~~asT~mN~~SSRSHsIftI~V~~~~---------~~~lV 586 (943)
..+.|++++.++++|.||+++.|.|++|++++|..|.++|++++|.||.+|||||+||+|.|.... ..++|
T Consensus 151 ~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~~~~skl~lV 230 (325)
T 1bg2_A 151 TNLSVHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINVKQENTQTEQKLSGKLYLV 230 (325)
T ss_dssp CSBCEEECTTSCEEETTCCCEEECSHHHHHHHHHHHHHHTTTTCSCHHHHHHHSEEEEEEEEEEEETTTCCEEEEEEEEE
T ss_pred CCceEEECCCCCEEecCceEEeCCCHHHHHHHHHHHHhhCceeecCCCCCCCCCeEEEEEEEEEEecCCCcEEEEEEEEE
Confidence 469999999999999999999999999999999999999999999999999999999999997643 23566
Q ss_pred h-----------------hh---------------hhhh---cCCCCCcccchHHhhhhcCCCcceeEEEecCCCCcChH
Q 002276 587 H-----------------KE---------------QAMA---SGSSRKNSKLTHLLQDSLGGDSKTLMFVQISPNENDLS 631 (943)
Q Consensus 587 D-----------------kE---------------sALa---~~sPyRdSKLTrLLQDSLGGNSKTlMIv~ISPs~~~~~ 631 (943)
| +| .||+ .++||||||||+||||||||||+|+||+||||+..+++
T Consensus 231 DLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGns~t~mia~vsP~~~~~~ 310 (325)
T 1bg2_A 231 DLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRDSKMTRILQDSLGGNCRTTIVICCSPSSYNES 310 (325)
T ss_dssp ECCCSCCCCCCSSSCTTSCCCCCCCHHHHHHHHHHHHHHTTCSCCCGGGSHHHHHGGGTSSSSCEEEEEEEECCBGGGHH
T ss_pred ECCCCCcccccCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHhCCCCcEEEEEEECCccccHH
Confidence 6 11 2333 36899999999999999999999999999999999999
Q ss_pred hhHHHHHHHhHhhcc
Q 002276 632 ETLCSLNFASRVRGI 646 (943)
Q Consensus 632 ETLsTLrFAsRak~I 646 (943)
||++||+||+|||+|
T Consensus 311 ETl~TL~fa~rak~I 325 (325)
T 1bg2_A 311 ETKSTLLFGQRAKTI 325 (325)
T ss_dssp HHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHhccC
Confidence 999999999999987
No 19
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=100.00 E-value=4.2e-73 Score=634.08 Aligned_cols=302 Identities=30% Similarity=0.428 Sum_probs=244.2
Q ss_pred HHHHHHHHhHHHHHHHHHhHHHhhcCCEEEEEEeCCCCchhhccCCeeEEeeeccCCCeEEEEeCC--------cCceee
Q 002276 338 EHLKIKFIEGTKERKELYNKVLELKGNIRVFCRCRPLNSEETAAGSVMAVDFESVRDGELTVISNG--------APKKTF 409 (943)
Q Consensus 338 e~l~~kl~~e~~~RrkLhN~lqELKGNIRV~~RVRPl~~~E~~~g~~~~V~~~s~~d~~i~v~~~g--------~~~ktF 409 (943)
..+..+|+.+...|+.+||+..+ ++||||+|||||++..|...+...++.++. +..+.+.... ...+.|
T Consensus 27 ~~~~~~~r~~~~~~~~~~~~~~~-~~~I~V~vRvRP~~~~E~~~~~~~~v~~~~--~~~~~v~~~~~~~~~~~~~~~~~F 103 (387)
T 2heh_A 27 ARMIKEFRATLECHPLTMTDPIE-EHRICVCVRKRPLNKQELAKKEIDVISIPS--KCLLLVHEPKLKVDLTKYLENQAF 103 (387)
T ss_dssp HHHHHHHHHHCCCBCCCTTSCCC-CCSEEEEEEECCCCHHHHHTTCCBCEECCB--SSEEEEEEEEECTTCCEEEEEEEE
T ss_pred HHHHHHHHHhhccCCCccCCCCC-CCCeEEEEECCCCChHHhccCCceEEEECC--CCEEEEeCCCccccccccccccEE
Confidence 34555777778889999999888 999999999999999998877766666542 2333332211 124689
Q ss_pred ecceeeCCCCCcccccccch-hhHHHhhCCcceEEEeeCcccCccccccccC------CCCCCccHHhHHHHHHHHHhh-
Q 002276 410 KFDAVFGPQADQVDVFQDTA-PFANSVLDGYNVCIFAYGQTGTGKTFTMEGT------KEARGVNFRTLEELFRIIKER- 481 (943)
Q Consensus 410 ~FD~VF~~~asQeeVFeev~-pLV~svLdGyNvcIFAYGQTGSGKTyTM~G~------~e~~GIIPRal~~LF~~i~~~- 481 (943)
+||+||+++++|++||+.++ |+|+++|+|||+||||||||||||||||+|+ ...+|||||++++||..+...
T Consensus 104 ~FD~VF~~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipr~~~~lF~~~~~~~ 183 (387)
T 2heh_A 104 CFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMASRDVFLLKNQPC 183 (387)
T ss_dssp ECSEEECTTCCHHHHHHHTTHHHHHHHHTTCEEEEEEESCTTSSHHHHHC-----------CCHHHHHHHHHHHHHTSHH
T ss_pred eeeEEEecCCCceeehhhhHHHHHHHHhcCCceEEEEecCCCCCCCeEeccCCCCCCcccCCceehhhHHHHHHHhhccc
Confidence 99999999999999999875 9999999999999999999999999999996 347899999999999998753
Q ss_pred cccceeEEEEEEEEEecchhhhccccCCCCCCCcccceEEeCCCCceEcCCceEEEecChHHHHHHHHccccccccccCC
Q 002276 482 EKLYRYDISVSVLEVYNEQIRDLLAVGSQPGAVSKRLEVRQAGEGMHHVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTN 561 (943)
Q Consensus 482 ~~~~~y~V~VSflEIYNE~I~DLL~~~~~~~~~~k~LeIred~~g~v~V~gLtev~V~S~eE~~~lL~~G~k~R~~asT~ 561 (943)
...+.|.|+|||+|||||+|+|||++. ..+.|++++.++++|.||+++.|.|++|++.+|..|.++|++++|.
T Consensus 184 ~~~~~~~V~vS~~EIYnE~v~DLL~~~-------~~l~i~ed~~~~v~v~gl~~~~V~s~~e~~~ll~~G~~~R~~~~T~ 256 (387)
T 2heh_A 184 YRKLGLEVYVTFFEIYNGKLFDLLNKK-------AKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTF 256 (387)
T ss_dssp HHTTTCEEEEEEEEEETTEEEETTTTT-------EECEEEECTTCCEEEETCCCEEESSHHHHHHHHHHHHHHC------
T ss_pred ccCceEEEEEEEEEecCCeEEECCCCC-------ccceEEEcCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhCCcccCc
Confidence 245789999999999999999999753 4689999999999999999999999999999999999999999999
Q ss_pred CccCCCCceeeEEEEEEEE----eehhchh------------------hh---------------hhhh---cCCCCCcc
Q 002276 562 ANEHSSRSHCMHCVMVRRE----LVEWGMH------------------KE---------------QAMA---SGSSRKNS 601 (943)
Q Consensus 562 mN~~SSRSHsIftI~V~~~----~~~~lVD------------------kE---------------sALa---~~sPyRdS 601 (943)
||+.|||||+||+|.|... ...++|| +| .||+ .++|||||
T Consensus 257 ~N~~SSRSH~Ifti~v~~~~~~~skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hvPYRdS 336 (387)
T 2heh_A 257 ANSNSSRSHACFQIILRAKGRMHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRES 336 (387)
T ss_dssp ---CGGGSEEEEEEEEESSSSEEEEEEEEECCCCC---------------CHHHHHHHHHHHHHHHHHHTTCSCCCGGGS
T ss_pred CcCCcccceEEEEEEEEECCeeeeEEEEEECCCCccccccccccccchhhHHHHhHHHHHHHHHHHHHhcCCCCCCcccc
Confidence 9999999999999999643 2234555 12 2332 36899999
Q ss_pred cchHHhhhh-cCCCcceeEEEecCCCCcChHhhHHHHHHHhHhhccccc
Q 002276 602 KLTHLLQDS-LGGDSKTLMFVQISPNENDLSETLCSLNFASRVRGIELG 649 (943)
Q Consensus 602 KLTrLLQDS-LGGNSKTlMIv~ISPs~~~~~ETLsTLrFAsRak~Ik~~ 649 (943)
|||+||||| |||||+|+||+||||+..+++||++||+||+|||+|++.
T Consensus 337 KLTrlLqdsllGgnskT~mIa~isP~~~~~~ETlsTLrfA~rak~I~~~ 385 (387)
T 2heh_A 337 KLTQVLRDSFIGENSRTCMIATISPGISSCEYTLNTLRYADRVKELSPH 385 (387)
T ss_dssp HHHHHTGGGGSSTTEEEEEEEEECCBGGGHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHhhhccCCCCeEEEEEEeCCccchHHHHHHHHHHHHHhccCcCC
Confidence 999999999 699999999999999999999999999999999999764
No 20
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=100.00 E-value=4.6e-73 Score=632.15 Aligned_cols=288 Identities=36% Similarity=0.565 Sum_probs=248.3
Q ss_pred HhhcCCEEEEEEeCCCCchhhccCCeeEEeeeccCCCeEEEEe--CCcCceeeecceeeCCCCCcccccccch-hhHHHh
Q 002276 359 LELKGNIRVFCRCRPLNSEETAAGSVMAVDFESVRDGELTVIS--NGAPKKTFKFDAVFGPQADQVDVFQDTA-PFANSV 435 (943)
Q Consensus 359 qELKGNIRV~~RVRPl~~~E~~~g~~~~V~~~s~~d~~i~v~~--~g~~~ktF~FD~VF~~~asQeeVFeev~-pLV~sv 435 (943)
.+.++||||||||||++..|...+...++.+.. ...+.+.. .+...+.|+||+||+++++|++||+.+. |+|+++
T Consensus 19 ~~~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~--~~~~~~~~~~~~~~~~~F~FD~vf~~~~~Q~~Vy~~~~~plv~~~ 96 (373)
T 2wbe_C 19 KKSNQNIQVYVRVRPLNSRERCIRSAEVVDVVG--PREVVTRHTLDSKLTKKFTFDRSFGPESKQCDVYSVVVSPLIEEV 96 (373)
T ss_dssp CCCCEECEEEEEECCCCHHHHHHTCCBCEEEET--TTEEEESSSSSSTTCEEEECSEEECTTCCHHHHHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEEcCCCChhhhccCCCceEEEcC--CCeEEEecCCCCCCceEEeccEEeccccchhHHHHHHHHHHHHHH
Confidence 367899999999999999998766666666543 23333322 2234689999999999999999999865 999999
Q ss_pred hCCcceEEEeeCcccCccccccccCCC-----------CCCccHHhHHHHHHHHHhhcccceeEEEEEEEEEecchhhhc
Q 002276 436 LDGYNVCIFAYGQTGTGKTFTMEGTKE-----------ARGVNFRTLEELFRIIKEREKLYRYDISVSVLEVYNEQIRDL 504 (943)
Q Consensus 436 LdGyNvcIFAYGQTGSGKTyTM~G~~e-----------~~GIIPRal~~LF~~i~~~~~~~~y~V~VSflEIYNE~I~DL 504 (943)
|+|||+||||||||||||||||+|+.. ++|||||++++||+.+.... +.|.|+|||+|||||+|+||
T Consensus 97 l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~~~--~~~~v~vS~~EIYnE~i~DL 174 (373)
T 2wbe_C 97 LNGYNCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRALSHLFDELRMME--VEYTMRISYLELYNEELCDL 174 (373)
T ss_dssp HHTCCEEEEEECSTTSSHHHHHTBSCSCCSSSCSSCTTTBCHHHHHHHHHHHHHHHCC--SCEEEEEEEEEEETTEEEES
T ss_pred hCCceEEEEeecCCCCCcceecccCccccccccccccCCCcChHHHHHHHHHHHHhcC--ceEEEEEEEEEEeCCeEEEC
Confidence 999999999999999999999999754 67999999999999997643 68999999999999999999
Q ss_pred cccCCCCCCCcccceEEeCC--CCceEcCCceEEEecChHHHHHHHHccccccccccCCCccCCCCceeeEEEEEEEE--
Q 002276 505 LAVGSQPGAVSKRLEVRQAG--EGMHHVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRRE-- 580 (943)
Q Consensus 505 L~~~~~~~~~~k~LeIred~--~g~v~V~gLtev~V~S~eE~~~lL~~G~k~R~~asT~mN~~SSRSHsIftI~V~~~-- 580 (943)
|++.. ...+.+++++ .|+++|.||+++.|.|++|++.+|..|.++|++++|.||++|||||+||+|.|...
T Consensus 175 L~~~~-----~~~l~i~~~~~~~g~v~v~gl~~~~V~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~ 249 (373)
T 2wbe_C 175 LSTDD-----TTKIRIFDDSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIREN 249 (373)
T ss_dssp SCTTS-----CSCCCEEECSSSSSCEEETTCCCEEESSHHHHHHHHHHHHHHHTTTCSCHHHHHHHSEEEEEEEEEECTT
T ss_pred CCCCC-----CCCceeEeccCCCCcEEecCceEEccCCHHHHHHHHHHHhhhhccccccCCCCCCCccEEEEEEEEEecC
Confidence 98643 2457888874 57899999999999999999999999999999999999999999999999998642
Q ss_pred ----------eehhchh------------------hh---------------hhhh---cCCCCCcccchHHhhhhcCCC
Q 002276 581 ----------LVEWGMH------------------KE---------------QAMA---SGSSRKNSKLTHLLQDSLGGD 614 (943)
Q Consensus 581 ----------~~~~lVD------------------kE---------------sALa---~~sPyRdSKLTrLLQDSLGGN 614 (943)
...++|| +| .||. .++||||||||+|||||||||
T Consensus 250 ~~~~~~~~~~skL~lVDLAGSEr~~~t~~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGn 329 (373)
T 2wbe_C 250 GIEGEDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLLTLGRVITALVDRAPHVPYRESKLTRLLQESLGGR 329 (373)
T ss_dssp CTTTCCEEEEEEEEEEECCCC--------------------CHHHHHHHHHHHHHHHCSSCCCGGGCHHHHHTHHHHHSS
T ss_pred CCCCCcceeEEEEEEEECCCCCccccccCccccchhHHHHHHHHHHHHHHHHHHHHcCCCcCccccchHHHHHHHHhCCC
Confidence 2235566 11 2232 468999999999999999999
Q ss_pred cceeEEEecCCCCcChHhhHHHHHHHhHhhccccccccccC
Q 002276 615 SKTLMFVQISPNENDLSETLCSLNFASRVRGIELGAAKKQL 655 (943)
Q Consensus 615 SKTlMIv~ISPs~~~~~ETLsTLrFAsRak~Ik~~~~~~~~ 655 (943)
|+|+||+||||+..+++||++||+||+||++|++.|.+|+.
T Consensus 330 skt~mIa~isP~~~~~~ETlsTLrfA~rak~I~n~p~vN~~ 370 (373)
T 2wbe_C 330 TKTSIIATISPGHKDIEETLSTLEYAHRAKNIQNKPEVNQK 370 (373)
T ss_dssp SEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEECCCCCEE
T ss_pred ceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccccceeccc
Confidence 99999999999999999999999999999999999998864
No 21
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=100.00 E-value=6.9e-73 Score=636.06 Aligned_cols=303 Identities=29% Similarity=0.404 Sum_probs=247.5
Q ss_pred HHHHHHHHhHHHHHHHHHhHHHhhcCCEEEEEEeCCCCchhhccCCeeEEeeeccCCCeEEEEeCC--------cCceee
Q 002276 338 EHLKIKFIEGTKERKELYNKVLELKGNIRVFCRCRPLNSEETAAGSVMAVDFESVRDGELTVISNG--------APKKTF 409 (943)
Q Consensus 338 e~l~~kl~~e~~~RrkLhN~lqELKGNIRV~~RVRPl~~~E~~~g~~~~V~~~s~~d~~i~v~~~g--------~~~ktF 409 (943)
..+-.+|..+...|+.+||...+ .+||+|||||||++..|...+...++.+.+ ...+.+.... ...+.|
T Consensus 47 ~~~i~~~r~~~~~~~~~~~~~~~-~~~I~V~vRvRPl~~~E~~~~~~~~v~~~~--~~~v~v~~~~~~~~~~~~~~~~~F 123 (410)
T 1v8k_A 47 ARMIKEFRVTMECSPLTVTDPIE-EHRICVCVRKRPLNKQELAKKEIDVISVPS--KCLLLVHEPKLKVDLTKYLENQAF 123 (410)
T ss_dssp HHHHHHHHHHHTCCTTTTTCTTS-CCCEEEEEEECCCCHHHHHTTCCBCEECCS--SSEEEEEEEEECTTCCEEEEEEEE
T ss_pred HHHHHHHHHhhccCCCccCCcCC-CCCeEEEEEeCCCChhHhhcCCccEEEECC--CCEEEEecCcccccccccccceEE
Confidence 34455677788889999999887 899999999999999998877766666542 2333332211 124689
Q ss_pred ecceeeCCCCCcccccccch-hhHHHhhCCcceEEEeeCcccCccccccccCC------CCCCccHHhHHHHHHHHHhh-
Q 002276 410 KFDAVFGPQADQVDVFQDTA-PFANSVLDGYNVCIFAYGQTGTGKTFTMEGTK------EARGVNFRTLEELFRIIKER- 481 (943)
Q Consensus 410 ~FD~VF~~~asQeeVFeev~-pLV~svLdGyNvcIFAYGQTGSGKTyTM~G~~------e~~GIIPRal~~LF~~i~~~- 481 (943)
+||+||+++++|++||+.++ |+|+++|+|||+||||||||||||||||+|+. ..+|||||++++||..+...
T Consensus 124 ~FD~VF~~~~tQ~~Vy~~~~~plV~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipra~~~lF~~~~~~~ 203 (410)
T 1v8k_A 124 CFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPR 203 (410)
T ss_dssp ECSEEECTTCCHHHHHHHTTHHHHHHHHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHHHHHHHTSHH
T ss_pred eeeEEEecCCChhhhhHHHHHHHHHHHhcCCceeEEeecCCCCCCCeEeecCCCCCCccccCcchhhhHHHHHHHHhhhc
Confidence 99999999999999999875 99999999999999999999999999999963 46899999999999998753
Q ss_pred cccceeEEEEEEEEEecchhhhccccCCCCCCCcccceEEeCCCCceEcCCceEEEecChHHHHHHHHccccccccccCC
Q 002276 482 EKLYRYDISVSVLEVYNEQIRDLLAVGSQPGAVSKRLEVRQAGEGMHHVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTN 561 (943)
Q Consensus 482 ~~~~~y~V~VSflEIYNE~I~DLL~~~~~~~~~~k~LeIred~~g~v~V~gLtev~V~S~eE~~~lL~~G~k~R~~asT~ 561 (943)
...+.|.|+|||+|||||+|+|||++. ..+.|++++.++++|.||+++.|.|++|++.+|..|.++|++++|.
T Consensus 204 ~~~~~~~V~vS~lEIYnE~i~DLL~~~-------~~l~i~ed~~~~v~V~gl~e~~V~s~~e~~~ll~~G~~~R~~~~T~ 276 (410)
T 1v8k_A 204 YRNLNLEVYVTFFEIYNGKVFDLLNKK-------AKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTF 276 (410)
T ss_dssp HHTTCCEEEEEEEEEETTEEEETTTTT-------EEEEEEECSSCCEEEETCCCEEESSHHHHHHHHHHHHHTCC-----
T ss_pred ccCccEEEEEEEEEeeCCEEEECCCCC-------CCceEEECCCCCeEecCCEEEEeCCHHHHHHHHHHHHhhCCccccc
Confidence 346899999999999999999999753 4699999999999999999999999999999999999999999999
Q ss_pred CccCCCCceeeEEEEEEEE----eehhchh------------------hh---------------hhhh---cCCCCCcc
Q 002276 562 ANEHSSRSHCMHCVMVRRE----LVEWGMH------------------KE---------------QAMA---SGSSRKNS 601 (943)
Q Consensus 562 mN~~SSRSHsIftI~V~~~----~~~~lVD------------------kE---------------sALa---~~sPyRdS 601 (943)
||..|||||+||+|.|... ...++|| +| .||+ .++|||||
T Consensus 277 ~N~~SSRSH~Ifti~v~~~~~~~skL~lVDLAGSER~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hIPYRdS 356 (410)
T 1v8k_A 277 ANSNSSRSHACFQILLRTKGRLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRES 356 (410)
T ss_dssp ---CCCSSEEEEEEEEESSSSEEEEEEEEECCCCCC------------TTHHHHHHHHHHHHHHHHHHTC------CCCC
T ss_pred CCCCCCCceEEEEEEEEeCCcceeEEEEEECCCccccccccccccchhHHHHHHhHHHHHHHHHHHHHhcCCCCCCcccc
Confidence 9999999999999998653 2234555 12 2332 36899999
Q ss_pred cchHHhhhh-cCCCcceeEEEecCCCCcChHhhHHHHHHHhHhhcccccc
Q 002276 602 KLTHLLQDS-LGGDSKTLMFVQISPNENDLSETLCSLNFASRVRGIELGA 650 (943)
Q Consensus 602 KLTrLLQDS-LGGNSKTlMIv~ISPs~~~~~ETLsTLrFAsRak~Ik~~~ 650 (943)
|||+||||| |||||+|+||+||||+..+++||++||+||+||+.|...|
T Consensus 357 KLTrLLqdsllGgnskT~mIa~iSP~~~~~~ETlsTLrfA~rak~i~~~~ 406 (410)
T 1v8k_A 357 KLTQVLRDSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKELSHHH 406 (410)
T ss_dssp HHHHHTTHHHHSSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTTC---
T ss_pred hhHHHHhhcccCCCceEEEEEEeCCccccHHHHHHHHHHHHHhccCCCCC
Confidence 999999999 6999999999999999999999999999999999997654
No 22
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-72 Score=626.25 Aligned_cols=284 Identities=32% Similarity=0.491 Sum_probs=230.9
Q ss_pred hhcCCEEEEEEeCCCCchhhcc----CCeeEEeeeccCCCeEEEEeCCcCceeeecceeeCCCCCcccccccch-hhHHH
Q 002276 360 ELKGNIRVFCRCRPLNSEETAA----GSVMAVDFESVRDGELTVISNGAPKKTFKFDAVFGPQADQVDVFQDTA-PFANS 434 (943)
Q Consensus 360 ELKGNIRV~~RVRPl~~~E~~~----g~~~~V~~~s~~d~~i~v~~~g~~~ktF~FD~VF~~~asQeeVFeev~-pLV~s 434 (943)
+.+|||||||||||++..|... .....+.+....+.......+....+.|+||+||+ +++|++||++++ |+|++
T Consensus 21 ~~~~~i~V~vRvRP~~~~e~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~-~~sQ~~Vy~~~~~plv~~ 99 (359)
T 3nwn_A 21 GTRKKVHAFVRVKPTDDFAHEMIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETVAKDVVSQ 99 (359)
T ss_dssp ---CCEEEEEEECCCSSCCTTTEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHHTHHHHHH
T ss_pred CCCCCEEEEEEcCCCCcccccceeecCCCcEEEEecCCccccccccCCcCceEeecCccCC-CCCHHHHHHHHHHHHHHH
Confidence 5789999999999998665431 01111111111111111111223457899999997 689999999986 99999
Q ss_pred hhCCcceEEEeeCcccCccccccccCCC---CCCccHHhHHHHHHHHHhhcccceeEEEEEEEEEecchhhhccccCCCC
Q 002276 435 VLDGYNVCIFAYGQTGTGKTFTMEGTKE---ARGVNFRTLEELFRIIKEREKLYRYDISVSVLEVYNEQIRDLLAVGSQP 511 (943)
Q Consensus 435 vLdGyNvcIFAYGQTGSGKTyTM~G~~e---~~GIIPRal~~LF~~i~~~~~~~~y~V~VSflEIYNE~I~DLL~~~~~~ 511 (943)
+|+|||+||||||||||||||||+|+.. ++|||||++++||+.+.... .+.|.|+|||+|||||+|+|||++....
T Consensus 100 ~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~~~~~~-~~~~~v~vS~~EIYnE~i~DLL~~~~~~ 178 (359)
T 3nwn_A 100 ALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEERP-THAITVRVSYLEIYNESLFDLLSTLPYV 178 (359)
T ss_dssp HHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTCT-TSCEEEEEEEEEEETTEEEETTSSSTTS
T ss_pred HhCCCCEEEEEeCCCCCCccEEeCCccCCccchhhHHHHHHHHHHHhhcCC-CCcEEEEEEEEEEecccccccccccccc
Confidence 9999999999999999999999999754 58999999999999987654 4789999999999999999999876654
Q ss_pred CCCcccceEEeCCCCceEcCCceEEEecChHHHHHHHHccccccccccCCCccCCCCceeeEEEEEEEEe----------
Q 002276 512 GAVSKRLEVRQAGEGMHHVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRREL---------- 581 (943)
Q Consensus 512 ~~~~k~LeIred~~g~v~V~gLtev~V~S~eE~~~lL~~G~k~R~~asT~mN~~SSRSHsIftI~V~~~~---------- 581 (943)
......+.+++++.| ++|.|++++.|.+++|++.+|..|.++|++++|.||..|||||+||+|.|....
T Consensus 179 ~~~~~~~~~~~~~~g-~~v~~l~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~i~~~~~~~~~~~~~~ 257 (359)
T 3nwn_A 179 GPSVTPMTIVENPQG-VFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSRTLSEEKYIT 257 (359)
T ss_dssp CTTTSCCEEEEETTE-EEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC-------CCEE
T ss_pred ccccccceEEecCCc-eEEeccEEEEecCHHHHHHHHHhhhhhcccccccCccccCcceEEEEEEEEeecccccCccccc
Confidence 555667888888765 799999999999999999999999999999999999999999999999985432
Q ss_pred -ehhchh-----------------hh---------------hhhh----cCCCCCcccchHHhhhhcCCCcceeEEEecC
Q 002276 582 -VEWGMH-----------------KE---------------QAMA----SGSSRKNSKLTHLLQDSLGGDSKTLMFVQIS 624 (943)
Q Consensus 582 -~~~lVD-----------------kE---------------sALa----~~sPyRdSKLTrLLQDSLGGNSKTlMIv~IS 624 (943)
..++|| +| .||+ .++||||||||+||||||||||+|+||||||
T Consensus 258 skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~~Lg~vI~aL~~~~~~hVPYRdSkLT~lLqdsLgGnskt~mI~~is 337 (359)
T 3nwn_A 258 SKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNCNMVLVTNIY 337 (359)
T ss_dssp EEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTHHHHSSSSEEEEEEEEC
T ss_pred ccceeeeccccccccccCCchhHHHhhhhhcccHHHHHHHHHHHHhcCCCcCCcccCHHHHHHHHhcCCCccEEEEEEeC
Confidence 235666 12 3443 3689999999999999999999999999999
Q ss_pred CCCcChHhhHHHHHHHhHhhcc
Q 002276 625 PNENDLSETLCSLNFASRVRGI 646 (943)
Q Consensus 625 Ps~~~~~ETLsTLrFAsRak~I 646 (943)
|+..+++||++||+||+|||+|
T Consensus 338 P~~~~~~ETlsTL~fA~rak~I 359 (359)
T 3nwn_A 338 GEAAQLEETLSSLRFASRMKLV 359 (359)
T ss_dssp CSGGGHHHHHHHHHHHTTGGGC
T ss_pred CchhhHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999987
No 23
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=100.00 E-value=7.5e-72 Score=616.73 Aligned_cols=273 Identities=37% Similarity=0.600 Sum_probs=233.3
Q ss_pred cCCEEEEEEeCCCCchhhccCCeeEEeeeccCCCeEEEEeCCcCceeeecceeeCCCCCcccccccch-hhHHHhhCCcc
Q 002276 362 KGNIRVFCRCRPLNSEETAAGSVMAVDFESVRDGELTVISNGAPKKTFKFDAVFGPQADQVDVFQDTA-PFANSVLDGYN 440 (943)
Q Consensus 362 KGNIRV~~RVRPl~~~E~~~g~~~~V~~~s~~d~~i~v~~~g~~~ktF~FD~VF~~~asQeeVFeev~-pLV~svLdGyN 440 (943)
.+||||+|||||+++.|...+...++.+.+.. ..+.+ ...+.|.||+||+++++|++||+.+. |+|+++|+|||
T Consensus 10 ~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~-~~~~~----~~~~~f~FD~Vf~~~~~Q~~vy~~~~~plv~~~l~G~n 84 (344)
T 4a14_A 10 EAPVRVALRVRPLLPKELLHGHQSCLQVEPGL-GRVTL----GRDRHFGFHVVLAEDAGQEAVYQACVQPLLEAFFEGFN 84 (344)
T ss_dssp CCCCEEEEEECCCCHHHHHTTCCBCEEEEGGG-TEEEE----TTTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCC
T ss_pred ccceEEEEEecccchHHHhccCeeEEEEcCCC-ceEEe----cccceEEEEEEEecCcchhHHHHHHHHHHHHHHHhhcC
Confidence 68999999999999999877776666654332 22322 13578999999999999999999965 99999999999
Q ss_pred eEEEeeCcccCccccccccC------CCCCCccHHhHHHHHHHHHhhcccceeEEEEEEEEEecchhhhccccCCCCCCC
Q 002276 441 VCIFAYGQTGTGKTFTMEGT------KEARGVNFRTLEELFRIIKEREKLYRYDISVSVLEVYNEQIRDLLAVGSQPGAV 514 (943)
Q Consensus 441 vcIFAYGQTGSGKTyTM~G~------~e~~GIIPRal~~LF~~i~~~~~~~~y~V~VSflEIYNE~I~DLL~~~~~~~~~ 514 (943)
+||||||||||||||||+|. .+++|||||++++||+.++... .+.|.|+|||+|||||+|+|||++.. .
T Consensus 85 ~tifAYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~lF~~i~~~~-~~~~~v~vS~~EIYnE~i~DLL~~~~----~ 159 (344)
T 4a14_A 85 ATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLIDEND-LLDCLVHVSYLEVYKEEFRDLLEVGT----A 159 (344)
T ss_dssp EEEEEESSTTSSHHHHHCC--------CCCCHHHHHHHHHHHHHHHCT-TSEEEEEEEEEEEETTEEEETTSSCC----C
T ss_pred eeEEEecccCCCceEeecccchhhhhhcccCCchHHHHHHHHhccccc-ceeeEEEEehhhhhHHHHHHHHHhcc----c
Confidence 99999999999999999997 4689999999999999998764 47999999999999999999997643 2
Q ss_pred cccceEEeCCCCceEcCCceEEEecChHHHHHHHHccccccccccCCCccCCCCceeeEEEEEEEEe-------------
Q 002276 515 SKRLEVRQAGEGMHHVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRREL------------- 581 (943)
Q Consensus 515 ~k~LeIred~~g~v~V~gLtev~V~S~eE~~~lL~~G~k~R~~asT~mN~~SSRSHsIftI~V~~~~------------- 581 (943)
...+.|++++.++++|.||+++.|.|++|++.+|..|.++|++++|.||+.|||||+||+|.|....
T Consensus 160 ~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~~~~~~~~~~~~~ 239 (344)
T 4a14_A 160 SRDIQLREDERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPGQ 239 (344)
T ss_dssp GGGCEEEECTTSCEEEESCCCEECCSHHHHHHHHHHHHHHHHC------CCGGGSEEEEEEEEEEEC------------C
T ss_pred cccceeeeccCCCEEEEeeeeccccCHHHHHHHHHhcchhcccCcchhhhcccccceEEEEEeeeCCCCcccCCCccccc
Confidence 4679999999999999999999999999999999999999999999999999999999999997642
Q ss_pred ----ehhchh-----------------hh---------------hhhh------cCCCCCcccchHHhhhhcCCCcceeE
Q 002276 582 ----VEWGMH-----------------KE---------------QAMA------SGSSRKNSKLTHLLQDSLGGDSKTLM 619 (943)
Q Consensus 582 ----~~~lVD-----------------kE---------------sALa------~~sPyRdSKLTrLLQDSLGGNSKTlM 619 (943)
..++|| +| .||+ .++||||||||+||||||||||+|+|
T Consensus 240 ~~~skl~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~hvPyRdSkLT~lLqdsLgGnskt~m 319 (344)
T 4a14_A 240 LLVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSKITRILKDSLGGNAKTVM 319 (344)
T ss_dssp EEEEEEEEEECCCCCCC--------------CCCSHHHHHHHHHHHHTCTTTTTSCCCGGGCHHHHHTTTSSSTTSEEEE
T ss_pred eeeeeeeEEecccchhhcccCCchhhhhhheeechhHHhhhhHHHhcCCccccCCCCCcchhhHHHHhHhhcCCCcceEE
Confidence 235666 12 3443 36899999999999999999999999
Q ss_pred EEecCCCCcChHhhHHHHHHHhHhh
Q 002276 620 FVQISPNENDLSETLCSLNFASRVR 644 (943)
Q Consensus 620 Iv~ISPs~~~~~ETLsTLrFAsRak 644 (943)
|+||||+..+++||++||+||+|||
T Consensus 320 I~~vsP~~~~~~ETl~TL~fA~rAk 344 (344)
T 4a14_A 320 IACVSPSSSDFDETLNTLNYASRAQ 344 (344)
T ss_dssp EEEECCBGGGHHHHHHHHHHHHHTC
T ss_pred EEEeCCCccchhHHhhhhhhhhhcC
Confidence 9999999999999999999999996
No 24
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=100.00 E-value=3.1e-71 Score=613.80 Aligned_cols=276 Identities=35% Similarity=0.527 Sum_probs=220.1
Q ss_pred CCEEEEEEeCCCCchhhccCCeeEEeeeccCCCeEEEEe---------CCcCceeeecceee--------CCCCCccccc
Q 002276 363 GNIRVFCRCRPLNSEETAAGSVMAVDFESVRDGELTVIS---------NGAPKKTFKFDAVF--------GPQADQVDVF 425 (943)
Q Consensus 363 GNIRV~~RVRPl~~~E~~~g~~~~V~~~s~~d~~i~v~~---------~g~~~ktF~FD~VF--------~~~asQeeVF 425 (943)
.||+|+|||||++..|...+..+++.++. ..+.+.. .....+.|+||+|| ++.++|++||
T Consensus 1 S~VkV~vRvRPl~~~E~~~~~~~vv~~~~---~~~~~~~~~~~~~~~~~~~~~k~F~FD~vF~~~d~~~~~~~a~Q~~vy 77 (354)
T 3gbj_A 1 SKVKVAVRIRPMNRRETDLHTKCVVDVDA---NKVILNPVNTNLSKGDARGQPKVFAYDHCFWSMDESVKEKYAGQDIVF 77 (354)
T ss_dssp -CEEEEEEECCCCHHHHHHTCCBCEEEET---TEEEECCC-----------CCEEEECSEEEECSCTTCTTTBCCHHHHH
T ss_pred CCcEEEEECCCCChhhhccCCceEEEeCC---CeEEEeCCccccccccccCCceEEEeeEEeccCccccccccccHHHHH
Confidence 48999999999999998877766666542 2232211 11236789999999 4568899999
Q ss_pred ccch-hhHHHhhCCcceEEEeeCcccCccccccccCCCCCCccHHhHHHHHHHHHhh-cccceeEEEEEEEEEecchhhh
Q 002276 426 QDTA-PFANSVLDGYNVCIFAYGQTGTGKTFTMEGTKEARGVNFRTLEELFRIIKER-EKLYRYDISVSVLEVYNEQIRD 503 (943)
Q Consensus 426 eev~-pLV~svLdGyNvcIFAYGQTGSGKTyTM~G~~e~~GIIPRal~~LF~~i~~~-~~~~~y~V~VSflEIYNE~I~D 503 (943)
+.++ |+|+++|+|||+||||||||||||||||+|+.+++|||||++++||..+... ...+.|.|+|||+|||||+|+|
T Consensus 78 ~~~~~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~D 157 (354)
T 3gbj_A 78 KCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRD 157 (354)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHCBTTEEEEEEEEEEEEETTEEEE
T ss_pred HHhhHHHHHHHhCCceeEEEeeCCCCCCCceEEecCCCCCchhhHHHHHHHHHHHhhcccccceeeeceeEEEecCeeeE
Confidence 9986 9999999999999999999999999999999999999999999999998763 4568999999999999999999
Q ss_pred ccccCCCCCCCcccceEEeCCCCceEcCCceEEEecChHHHHHHHHccccccccccCCCccCCCCceeeEEEEEEEEe--
Q 002276 504 LLAVGSQPGAVSKRLEVRQAGEGMHHVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRREL-- 581 (943)
Q Consensus 504 LL~~~~~~~~~~k~LeIred~~g~v~V~gLtev~V~S~eE~~~lL~~G~k~R~~asT~mN~~SSRSHsIftI~V~~~~-- 581 (943)
||++.. ....+.|++++.++++|.||+++.|.|++|++.+|..|.++|++++|.||+.|||||+||+|.|....
T Consensus 158 LL~~~~----~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~ 233 (354)
T 3gbj_A 158 LLDPKG----SRQTLKVREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHAVFKITLTHTLYD 233 (354)
T ss_dssp TTC----------CBCBC------CCBTTCCCEEECSHHHHHHHHHHHHHCC----------CTTSEEEEEEEEEEEEEC
T ss_pred ccCCCC----CCcceEEEEcCCCCEEEEeeEEEecCCHHHHHHHHHHHHhcCCeeecCCCCCCCcccEEEEEEEEEEecc
Confidence 998653 23579999999999999999999999999999999999999999999999999999999999996531
Q ss_pred -----------ehhchh-----------------hh---------------hhhh---------cCCCCCcccchHHhhh
Q 002276 582 -----------VEWGMH-----------------KE---------------QAMA---------SGSSRKNSKLTHLLQD 609 (943)
Q Consensus 582 -----------~~~lVD-----------------kE---------------sALa---------~~sPyRdSKLTrLLQD 609 (943)
..++|| +| .||+ .++||||||||+||||
T Consensus 234 ~~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~IN~SL~aLg~vI~aL~~~~~~~~~~~hvPyRdSkLT~lLqd 313 (354)
T 3gbj_A 234 VKSGTSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLKD 313 (354)
T ss_dssp TTSCEEEEEEEEEEEEECCCCCCCCCCC------CHHHHHHHHHHHHHHHHHHHHHC------CCCCCGGGSHHHHHTHH
T ss_pred cCCCCCCeeEEEEEEEECCCCCchhhcCCccccchhHHHhhHHHHHHHHHHHHHHhhhcccCCCCcccccccHHHHHHHH
Confidence 235666 12 3443 3589999999999999
Q ss_pred hcCCCcceeEEEecCCCCcChHhhHHHHHHHhHhhc
Q 002276 610 SLGGDSKTLMFVQISPNENDLSETLCSLNFASRVRG 645 (943)
Q Consensus 610 SLGGNSKTlMIv~ISPs~~~~~ETLsTLrFAsRak~ 645 (943)
||||||+|+||+||||+..+++||++||+||.||+.
T Consensus 314 sLgGnskt~mIa~vsP~~~~~~ETlsTLr~a~~~~~ 349 (354)
T 3gbj_A 314 SLGGNSKTAMVATVSPAADNYDETLSTLRYADRAKH 349 (354)
T ss_dssp HHSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHHC-
T ss_pred HhCCCCeEEEEEEeCCCcchHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999985
No 25
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=100.00 E-value=4.5e-71 Score=613.54 Aligned_cols=285 Identities=26% Similarity=0.362 Sum_probs=229.9
Q ss_pred CEEEEEEeCCCCchhhccCCeeEEeeeccCCCeEEEEeCC--------cCceeeecceeeCCCCCcccccccch-hhHHH
Q 002276 364 NIRVFCRCRPLNSEETAAGSVMAVDFESVRDGELTVISNG--------APKKTFKFDAVFGPQADQVDVFQDTA-PFANS 434 (943)
Q Consensus 364 NIRV~~RVRPl~~~E~~~g~~~~V~~~s~~d~~i~v~~~g--------~~~ktF~FD~VF~~~asQeeVFeev~-pLV~s 434 (943)
||||||||||++..|...+...++.+.+ +..+.+.... ...+.|.||+||+++++|++||+++. |+|++
T Consensus 1 ~IrV~vRvRP~~~~E~~~~~~~~v~~~~--~~~i~i~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~ 78 (360)
T 1ry6_A 1 MIKVVVRKRPLSELEKKKKDSDIITVKN--NCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDTVDNFTVYENTIKPLIID 78 (360)
T ss_dssp CEEEEEEECCCCHHHHHTTCCBCEEEEE--TTEEEEEEEEEETTTEEEEEEEEEECSEEECTTCCHHHHHHHHTHHHHHH
T ss_pred CeEEEEECCCCChHHhccCCceEEEECC--CCEEEEeCCccccccccccccceEEeeeEecCCCCHHHHHHHHhhhhhhh
Confidence 7999999999999998877666666543 3344432211 12468999999999999999999865 99999
Q ss_pred hhC-CcceEEEeeCcccCccccccccCC-----CCCCccHHhHHHHHHHHHhhcccceeEEEEEEEEEecchhhhccccC
Q 002276 435 VLD-GYNVCIFAYGQTGTGKTFTMEGTK-----EARGVNFRTLEELFRIIKEREKLYRYDISVSVLEVYNEQIRDLLAVG 508 (943)
Q Consensus 435 vLd-GyNvcIFAYGQTGSGKTyTM~G~~-----e~~GIIPRal~~LF~~i~~~~~~~~y~V~VSflEIYNE~I~DLL~~~ 508 (943)
+++ |||+||||||||||||||||+|+. +.+|||||++++||..++.....+.|.|+|||+|||||+|+|||.+.
T Consensus 79 ~~~~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~ 158 (360)
T 1ry6_A 79 LYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKR 158 (360)
T ss_dssp HHHHCCEEEEEEECCTTSSHHHHHHBSSSTTTSSCBCHHHHHHHHHHHHHHHHCSSSCEEEEEEEEEEETTEEEESCCC-
T ss_pred hccCCceeEEEeeCCCCCCCCEEEecCCCCCCccCCCcHHHHHHHHHHHHHhhccCCceEEEEEEEEeeCCeeEEcccCC
Confidence 996 999999999999999999999974 67999999999999999887777899999999999999999999753
Q ss_pred CCCCCCcccceEEeCCCCceEcCCceEEEecChHHHHHHHHccccccccccCCCccCCCCceeeEEEEEEEE------ee
Q 002276 509 SQPGAVSKRLEVRQAGEGMHHVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRRE------LV 582 (943)
Q Consensus 509 ~~~~~~~k~LeIred~~g~v~V~gLtev~V~S~eE~~~lL~~G~k~R~~asT~mN~~SSRSHsIftI~V~~~------~~ 582 (943)
..+.+++++.++++|.||+++.|.|++|++.+|..|.++|++++|.||+.|||||+||+|.|... ..
T Consensus 159 -------~~~~~~e~~~~~~~v~gl~~~~V~s~~e~~~~l~~g~~~R~~~~T~~N~~SSRSH~if~i~v~~~~~~~~~sk 231 (360)
T 1ry6_A 159 -------KMVAALENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDLKDINKNTSLGK 231 (360)
T ss_dssp -----------------CCBCGGGSCCEEECSHHHHHHHHHHHHHHHHHCTTCCTTGGGGSEEEEEEEEEETTTTEEEEE
T ss_pred -------ccceeeEcCCCCEEEcCcEEEEeCCHHHHHHHHHHHhhhhhcccccccCCCccceEEEEEEEEeccCCcceeE
Confidence 24678899999999999999999999999999999999999999999999999999999999653 22
Q ss_pred hhchh------------------hh---------------hhhh---cCCCCCcccchHHhhhhcCCCcceeEEEecCCC
Q 002276 583 EWGMH------------------KE---------------QAMA---SGSSRKNSKLTHLLQDSLGGDSKTLMFVQISPN 626 (943)
Q Consensus 583 ~~lVD------------------kE---------------sALa---~~sPyRdSKLTrLLQDSLGGNSKTlMIv~ISPs 626 (943)
.++|| +| .||. .++||||||||+||||||||||+|+||+||||+
T Consensus 232 L~lVDLAGSEr~~~t~~~~~~~~~E~~~INkSL~aLg~vI~aL~~~~~hvPyRdSkLT~lLqdsLgGnskt~mIa~isP~ 311 (360)
T 1ry6_A 232 IAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMDSDKNHIPFRDSELTKVLRDIFVGKSKSIMIANISPT 311 (360)
T ss_dssp EEEEECCCTTGGGGGGCSSHHHHHHHHHHHHHHHHHHHHHHHHTTSTTSCCGGGCHHHHHTGGGGSSSCEEEEEEEECCB
T ss_pred EEEEECCCCccccccccccccchHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCHHHHHHHHHhCCCCeEEEEEEeCCC
Confidence 34555 12 2332 368999999999999999999999999999999
Q ss_pred CcChHhhHHHHHHHhHhhccccccccccCCh
Q 002276 627 ENDLSETLCSLNFASRVRGIELGAAKKQLDT 657 (943)
Q Consensus 627 ~~~~~ETLsTLrFAsRak~Ik~~~~~~~~~~ 657 (943)
..+++||++||+||+||++|++.+..+....
T Consensus 312 ~~~~~ETlsTLrfA~rak~i~n~~~~~~~~~ 342 (360)
T 1ry6_A 312 ISCCEQTLNTLRYSSRVKNKGNSKLEGKPIP 342 (360)
T ss_dssp GGGHHHHHHHHHHHHHHCC------------
T ss_pred cccHHHHHHHHHHHHHHhhcccCcccCCCCc
Confidence 9999999999999999999999776655433
No 26
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=100.00 E-value=2e-71 Score=616.02 Aligned_cols=281 Identities=31% Similarity=0.470 Sum_probs=232.3
Q ss_pred HHHhhcCCEEEEEEeCCCCchhhccCCeeEEeeeccCCCeEEEEeC----------CcCceeeecceeeCCCCCcccccc
Q 002276 357 KVLELKGNIRVFCRCRPLNSEETAAGSVMAVDFESVRDGELTVISN----------GAPKKTFKFDAVFGPQADQVDVFQ 426 (943)
Q Consensus 357 ~lqELKGNIRV~~RVRPl~~~E~~~g~~~~V~~~s~~d~~i~v~~~----------g~~~ktF~FD~VF~~~asQeeVFe 426 (943)
.-.+++|||||||||||+...+. .++.+.. +...+.+... ....+.|+||+||+ +++|++||+
T Consensus 17 ~~~~~~g~IrV~vRvRP~~~~~~-----~~~~~~~-~~~~v~i~~~~~~~~~~~~~~~~~~~F~fD~Vf~-~~sQ~~Vy~ 89 (358)
T 2nr8_A 17 RGSGTRKKVHAFVRVKPTDDFAH-----EMIRYGD-DKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYE 89 (358)
T ss_dssp ------CCEEEEEEECCCSSCCT-----TTEEECT-TSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHH
T ss_pred CCCCCCCCeEEEEEcCCCCCCcc-----ceeEECC-CCCEEEEecCCccccccccCCCcceEEECCeecC-CcCHHHHHH
Confidence 44689999999999999875432 1233322 2333433221 12357899999995 899999999
Q ss_pred cch-hhHHHhhCCcceEEEeeCcccCccccccccCCCC---CCccHHhHHHHHHHHHhhcccceeEEEEEEEEEecchhh
Q 002276 427 DTA-PFANSVLDGYNVCIFAYGQTGTGKTFTMEGTKEA---RGVNFRTLEELFRIIKEREKLYRYDISVSVLEVYNEQIR 502 (943)
Q Consensus 427 ev~-pLV~svLdGyNvcIFAYGQTGSGKTyTM~G~~e~---~GIIPRal~~LF~~i~~~~~~~~y~V~VSflEIYNE~I~ 502 (943)
.+. |+|+++++|||+||||||||||||||||+|+.++ +|||||++++||+.++... .+.|.|+|||+|||||+|+
T Consensus 90 ~~~~~lv~~~l~G~N~tIfAYGqTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~i~~~~-~~~~~v~vS~~EIYnE~i~ 168 (358)
T 2nr8_A 90 TVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEERP-THAITVRVSYLEIYNESLF 168 (358)
T ss_dssp HHTHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTCT-TSCEEEEEEEEEEETTEEE
T ss_pred HHHHHHHHHHhCCCceEEEEECCCCCCCceEecccccccccCCcHHHHHHHHHHHHhhcC-CceEEEEEEEEEEeCCeee
Confidence 986 9999999999999999999999999999998764 8999999999999998754 4689999999999999999
Q ss_pred hccccCCCCCCCcccceEEeCCCCceEcCCceEEEecChHHHHHHHHccccccccccCCCccCCCCceeeEEEEEEEEe-
Q 002276 503 DLLAVGSQPGAVSKRLEVRQAGEGMHHVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRREL- 581 (943)
Q Consensus 503 DLL~~~~~~~~~~k~LeIred~~g~v~V~gLtev~V~S~eE~~~lL~~G~k~R~~asT~mN~~SSRSHsIftI~V~~~~- 581 (943)
|||++....+.....+.|++++ .+++|+||+++.|.+++|++.+|..|.++|++++|.||+.|||||+||+|.|....
T Consensus 169 DLL~~~~~~~~~~~~l~i~e~~-~g~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~If~i~v~~~~~ 247 (358)
T 2nr8_A 169 DLLSTLPYVGPSVTPMTIVENP-QGVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRSHCIFTIYLEAHSR 247 (358)
T ss_dssp ETTSSSTTSCTTTSCCEEEEET-TEEEEETCCCEECSSHHHHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEEEEEC--
T ss_pred ECcCCccccCccCCceEEEECC-CceEecCCEEEEcCCHHHHHHHHHHHHhccccccccCCCCCCcCeEEEEEEEEEEec
Confidence 9998765444455789999999 55799999999999999999999999999999999999999999999999997532
Q ss_pred ----------ehhchh-----------------hh---------------hhhh----cCCCCCcccchHHhhhhcCCCc
Q 002276 582 ----------VEWGMH-----------------KE---------------QAMA----SGSSRKNSKLTHLLQDSLGGDS 615 (943)
Q Consensus 582 ----------~~~lVD-----------------kE---------------sALa----~~sPyRdSKLTrLLQDSLGGNS 615 (943)
..++|| +| .||+ .++||||||||+||||||||||
T Consensus 248 ~~~~~~~~~skL~lVDLAGSEr~~~t~~~g~rl~E~~~INkSL~aLg~vI~aL~~~~~~hiPyRdSkLT~LLqdsLgGns 327 (358)
T 2nr8_A 248 TLSEEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLEQAIIALGDQKRDHIPFRQCKLTHALKDSLGGNC 327 (358)
T ss_dssp -----CCEEEEEEEEECCCCC----------------CCSTHHHHHHHHHHHHHC-----CCGGGSHHHHHTHHHHSSSS
T ss_pred cCCCCCEEEEEEEEEECCCCCcccccCCchhhHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCccCHHHHHHHHhcCCCC
Confidence 235666 12 3443 3589999999999999999999
Q ss_pred ceeEEEecCCCCcChHhhHHHHHHHhHhhcc
Q 002276 616 KTLMFVQISPNENDLSETLCSLNFASRVRGI 646 (943)
Q Consensus 616 KTlMIv~ISPs~~~~~ETLsTLrFAsRak~I 646 (943)
+|+||+||||+..+++||++||+||+|||.|
T Consensus 328 kt~mIa~isP~~~~~~ETlsTLrfA~Rak~I 358 (358)
T 2nr8_A 328 NMVLVTNIYGEAAQLEETLSSLRFASRMKLV 358 (358)
T ss_dssp EEEEEEEECCSGGGHHHHHHHHHHHTTGGGC
T ss_pred eEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999986
No 27
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=100.00 E-value=3.8e-68 Score=586.93 Aligned_cols=275 Identities=28% Similarity=0.404 Sum_probs=214.0
Q ss_pred hhcCCEEEEEEeCCCCchhhccCCeeEEeeeccCCCeEEEEeCCcCceeeecceeeCCCCCcccccccch-hhHHHhhCC
Q 002276 360 ELKGNIRVFCRCRPLNSEETAAGSVMAVDFESVRDGELTVISNGAPKKTFKFDAVFGPQADQVDVFQDTA-PFANSVLDG 438 (943)
Q Consensus 360 ELKGNIRV~~RVRPl~~~E~~~g~~~~V~~~s~~d~~i~v~~~g~~~ktF~FD~VF~~~asQeeVFeev~-pLV~svLdG 438 (943)
+-.++|||+|||||+++.|.. +...++.+....++...+. ..+.|+||+||+++++|++||+++. |+|+++++|
T Consensus 19 ~~~~~VrV~vRvRP~~~~e~~-~~~~~v~~~~~~~~~~~~~----~~~~F~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G 93 (344)
T 3dc4_A 19 AKLSAVRIAVREAPYRQFLGR-REPSVVQFPPWSDGKSLIV----DQNEFHFDHAFPATISQDEMYQALILPLVDKLLEG 93 (344)
T ss_dssp CCCSEEEEEEEECCCC--------CCSEECCSSSCSSEEEE----TTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCccccc-CCceEEEecCCCCCceEEe----cCcEEEcceEECCCCCHHHHHHhhccchhhHhhCC
Confidence 457899999999999887643 3444566554333322222 2478999999999999999999965 999999999
Q ss_pred cceEEEeeCcccCccccccccCC------CCCCccHHhHHHHHHHHHhhcc--cceeEEEEEEEEEecchhhhccccCCC
Q 002276 439 YNVCIFAYGQTGTGKTFTMEGTK------EARGVNFRTLEELFRIIKEREK--LYRYDISVSVLEVYNEQIRDLLAVGSQ 510 (943)
Q Consensus 439 yNvcIFAYGQTGSGKTyTM~G~~------e~~GIIPRal~~LF~~i~~~~~--~~~y~V~VSflEIYNE~I~DLL~~~~~ 510 (943)
||+||||||||||||||||.|+. +++|||||++++||+.+..... .+.|.|+|||+|||||+|+|||++...
T Consensus 94 ~N~tifAYGQTGSGKTyTM~g~~~~~~~~~~~GIipra~~~LF~~i~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~ 173 (344)
T 3dc4_A 94 FQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTPH 173 (344)
T ss_dssp CCEEEEEESSTTSSHHHHHTCSCGGGSCGGGCCHHHHHHHHHHHHHHHSSSSCSSCCEEEEEEEEEESSCEEETTSSCTT
T ss_pred CceEEEEecCCCCCCCeEEcCCCCCCCCcccCCcHHHHHHHHHHHHHhhhhccccceEEEEEEEEEeCCeeEEccCCCCC
Confidence 99999999999999999999874 5689999999999999987543 357999999999999999999986532
Q ss_pred CCCCcccceEEeCCCCceEcCCceEEEecChHHHHHHHHccccccccccCCCccCCCCceeeEEEEEEEEe---ehhchh
Q 002276 511 PGAVSKRLEVRQAGEGMHHVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRREL---VEWGMH 587 (943)
Q Consensus 511 ~~~~~k~LeIred~~g~v~V~gLtev~V~S~eE~~~lL~~G~k~R~~asT~mN~~SSRSHsIftI~V~~~~---~~~lVD 587 (943)
. . .....+.|++++.|.|++|++.+|..|.++|++++|.||..|||||+||+|.|.... ..++||
T Consensus 174 ~-----~-------~~~~~~~~~~~~~v~s~~e~~~ll~~g~~~R~~~~T~~N~~SSRSH~Ifti~v~~~~~~skl~lVD 241 (344)
T 3dc4_A 174 M-----P-------MVAARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHVKSKTHHSRMNIVD 241 (344)
T ss_dssp S-----B-------CCSSTTTCSCCEECSSHHHHHHHHHHHHHTCC----------CCEEEEEEEEEECSSCEEEEEEEE
T ss_pred C-----c-------cccccccCceecccCCHHHHHHHHHHHHhhcccccccCCCCCCCceEEEEEEEEecCcEEEEEEEE
Confidence 1 0 011245689999999999999999999999999999999999999999999996532 345666
Q ss_pred -----------------hh---------------hhhh---cCCCCCcccchHHhhhhcCCCcceeEEEecCCCCcChHh
Q 002276 588 -----------------KE---------------QAMA---SGSSRKNSKLTHLLQDSLGGDSKTLMFVQISPNENDLSE 632 (943)
Q Consensus 588 -----------------kE---------------sALa---~~sPyRdSKLTrLLQDSLGGNSKTlMIv~ISPs~~~~~E 632 (943)
+| .||+ .++||||||||+||||||||||+|+||+||||+..+++|
T Consensus 242 LAGSEr~~~t~~~g~r~~E~~~INkSL~aLg~vI~aL~~~~~hiPyRdSkLT~lLqdsLgGnskt~mIa~isP~~~~~~E 321 (344)
T 3dc4_A 242 LAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTVIPYRDSVLTTVLQASLTAQSYLTFLACISPHQCDLSE 321 (344)
T ss_dssp CCCCCCC-------------CCSCCHHHHHHHHHHHHHTTCSSCCGGGSHHHHHTTTTSSTTCEEEEEEEECCCGGGHHH
T ss_pred CCCCccccccccccchhHHHHHHhHhHHHHHHHHHHHhccCCcCCccccHHHHHHHHHhCCCCEEEEEEEeCCchhhHHH
Confidence 12 2333 357999999999999999999999999999999999999
Q ss_pred hHHHHHHHhHhhccccccc
Q 002276 633 TLCSLNFASRVRGIELGAA 651 (943)
Q Consensus 633 TLsTLrFAsRak~Ik~~~~ 651 (943)
|++||+||+||+.....++
T Consensus 322 TlsTL~fA~ra~~~~~~~~ 340 (344)
T 3dc4_A 322 TLSTLRFGTSAKAAALEHH 340 (344)
T ss_dssp HHHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHHhhcCCCCC
Confidence 9999999999998765543
No 28
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=100.00 E-value=4.4e-66 Score=617.02 Aligned_cols=292 Identities=35% Similarity=0.557 Sum_probs=225.6
Q ss_pred HHHHhHHHhhcCCEEEEEEeC----CCCchhhccCC-eeEEeeec----cCCCeEEEEeC---CcCceeeecceeeCCCC
Q 002276 352 KELYNKVLELKGNIRVFCRCR----PLNSEETAAGS-VMAVDFES----VRDGELTVISN---GAPKKTFKFDAVFGPQA 419 (943)
Q Consensus 352 rkLhN~lqELKGNIRV~~RVR----Pl~~~E~~~g~-~~~V~~~s----~~d~~i~v~~~---g~~~ktF~FD~VF~~~a 419 (943)
+..-.++..+.+++||||||| |.+..|...+. ...+..++ .....+++..+ ....++|+||+||++++
T Consensus 363 ~~Aq~~~~~il~~~rV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fd~vf~~~~ 442 (715)
T 4h1g_A 363 AAAQTNAAALKGNIRVFCRIRNVSSSSSSSSSSSSEDIIQYEAPQDINDESKQELVITRNINNNFSNLRFLFDKIFEREQ 442 (715)
T ss_dssp HHHHHHHSSSSCSEEEEEEECCCC-------------BCEEECCC-------CEEEEEEEETTEEEEEEEECSEEECSSC
T ss_pred HHHHHHHHHHHhcCeEEEEEeccccccccccccccccceeccCCCCCCCCCCCeEEEcCCCCCCCCCeEEEeceEeCCCC
Confidence 344456778999999999999 54444444333 22332221 22345555442 33578999999999999
Q ss_pred CcccccccchhhHHHhhCCcceEEEeeCcccCccccccccCCCCCCccHHhHHHHHHHHHh-hcccceeEEEEEEEEEec
Q 002276 420 DQVDVFQDTAPFANSVLDGYNVCIFAYGQTGTGKTFTMEGTKEARGVNFRTLEELFRIIKE-REKLYRYDISVSVLEVYN 498 (943)
Q Consensus 420 sQeeVFeev~pLV~svLdGyNvcIFAYGQTGSGKTyTM~G~~e~~GIIPRal~~LF~~i~~-~~~~~~y~V~VSflEIYN 498 (943)
+|++||+.+.|+|+++|+|||+||||||||||||||||+|+ ++|||||++++||+.++. ....+.|.|+|||+||||
T Consensus 443 ~q~~v~~~~~~~v~~~~~G~n~~i~ayGqtgsGKT~Tm~g~--~~Giipr~~~~lf~~~~~~~~~~~~~~v~~s~~Eiyn 520 (715)
T 4h1g_A 443 SNDLVFEELSQLIQCSLDGTNVCVFAYGQTGSGKTFTMSHP--TNGMIPLSLKKIFNDIEELKEKGWSYTVRGKFIEIYN 520 (715)
T ss_dssp CHHHHGGGTHHHHHHHHTTCCEEEEEESSTTSSHHHHHHCT--TTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEET
T ss_pred CHHHHHHHHHHHHHHHhCCceEEEEccCCCCCchhhccCCC--CCCcHHHHHHHHHHHHHHhhcCCceEEEEEEEEEEEC
Confidence 99999999999999999999999999999999999999995 579999999999999987 445689999999999999
Q ss_pred chhhhccccCCCCCCCcccceEEeC-CCCceEcCCceEEEecChHHHHHHHHccccccccccCCCccCCCCceeeEEEEE
Q 002276 499 EQIRDLLAVGSQPGAVSKRLEVRQA-GEGMHHVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMV 577 (943)
Q Consensus 499 E~I~DLL~~~~~~~~~~k~LeIred-~~g~v~V~gLtev~V~S~eE~~~lL~~G~k~R~~asT~mN~~SSRSHsIftI~V 577 (943)
|+|+|||++...+ ..++.++++ ..|.++|.||+++.|.|++|++.+|..|.++|++++|.||.+|||||+||+|+|
T Consensus 521 e~i~DLl~~~~~~---~~~~~~~~~~~~g~~~v~~l~~~~v~~~~~~~~~~~~g~~~r~~~~t~~n~~ssRSH~i~~i~~ 597 (715)
T 4h1g_A 521 EAIVDLLNPKIDP---NTKYEIKHDDIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAATKSNDHSSRSHSIFIIDL 597 (715)
T ss_dssp TEEEESSSCCCCT---TCCCCEEEETTTTEEEETTCCCEECSCHHHHHHHHHHHHCC----------CGGGSEEEEEEEE
T ss_pred CEEEECCCCCCCC---CCcceeEEecCCCCEEEeCCEEEEcCCHHHHHHHHHHHHhccCcccccccCccccccEEEEEEE
Confidence 9999999875432 345667765 467799999999999999999999999999999999999999999999999999
Q ss_pred EEEee---------hhchh-----------------hh---------------hhhh----cCCCCCcccchHHhhhhcC
Q 002276 578 RRELV---------EWGMH-----------------KE---------------QAMA----SGSSRKNSKLTHLLQDSLG 612 (943)
Q Consensus 578 ~~~~~---------~~lVD-----------------kE---------------sALa----~~sPyRdSKLTrLLQDSLG 612 (943)
.+.+. +++|| +| .+|+ .++||||||||||||||||
T Consensus 598 ~~~~~~~~~~~~~~l~lvDLAGsEr~~~~~~~g~~~~E~~~IN~sL~~L~~vi~al~~~~~~~vpyR~SkLT~lL~~slg 677 (715)
T 4h1g_A 598 QGYNSLTKESSYGTLNLIDLAGSERLNNSRAEGDRLKETQAINKSLSCLGDVIHSLNLKDGSHVPYRNSKLTYLLKHSLG 677 (715)
T ss_dssp EEEETTTCCEEEEEEEEEECCCCCC---------CHHHHHHHHHHHHHHHHHHHHHHHCSCCCCCGGGCHHHHHTGGGTS
T ss_pred EEEecCCCCEeEEEEEEEeCCCcccccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCCccCHHHHHHHhhcC
Confidence 76432 35565 12 2332 4689999999999999999
Q ss_pred CCcceeEEEecCCCCcChHhhHHHHHHHhHhhcccc
Q 002276 613 GDSKTLMFVQISPNENDLSETLCSLNFASRVRGIEL 648 (943)
Q Consensus 613 GNSKTlMIv~ISPs~~~~~ETLsTLrFAsRak~Ik~ 648 (943)
|||+|+|||||||+..+++||++||+||+|||+|+.
T Consensus 678 gn~~t~~i~~isp~~~~~~et~~tL~fa~r~~~i~~ 713 (715)
T 4h1g_A 678 GNSKTLMFVNISPLTKDLNETINSLRFATKVNNTRI 713 (715)
T ss_dssp TTCEEEEEEEECCBGGGHHHHHHHHHHHHHHCC---
T ss_pred CCceEEEEEEECCChhhHHHHHHHHHHHHHhcccee
Confidence 999999999999999999999999999999999974
No 29
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-36 Score=324.54 Aligned_cols=263 Identities=13% Similarity=0.142 Sum_probs=189.6
Q ss_pred HHHHhHHHHHHHHHhHHHhhcCCEEEEEEeCCCC-chhhccCCeeEEeeeccCCCeEEEEeCCcCceeeecceeeCCCCC
Q 002276 342 IKFIEGTKERKELYNKVLELKGNIRVFCRCRPLN-SEETAAGSVMAVDFESVRDGELTVISNGAPKKTFKFDAVFGPQAD 420 (943)
Q Consensus 342 ~kl~~e~~~RrkLhN~lqELKGNIRV~~RVRPl~-~~E~~~g~~~~V~~~s~~d~~i~v~~~g~~~ktF~FD~VF~~~as 420 (943)
.+|.+|+..||+|||+|+||||||||||||||.. + ....+++.+ ..+.+ .. ..++|.||+||++.++
T Consensus 3 dK~eqE~~~RRkL~NsI~ELKGnIRVFcrvrp~~~p------~~~~v~y~~---~~I~v-~~--~~k~f~FDRVf~p~s~ 70 (298)
T 2o0a_A 3 STVEKELLRSRRLENSIIEQKGTMRCYAYVMEQNLP------ENLLFDYEN---GVITQ-GL--SEHVYKFNRVIPHLKV 70 (298)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTCCEEEEEECGGGSC------TTEEEETTT---TEEEE-TT--TCCEEECSEEEETTTS
T ss_pred hHHHHHHHHHHHHHhHHHHhhCceEEEEEeccccCC------ccceeecCc---cceee-cC--CCceEEeeeEECcccc
Confidence 3688899999999999999999999999999954 3 123455543 23554 22 3489999999999999
Q ss_pred cc--cccccchhhHHHhhC-CcceEEEeeCcccCccccccccCCCCCCccHHhHHHHHHHHHh-hcccceeEEEEEEEEE
Q 002276 421 QV--DVFQDTAPFANSVLD-GYNVCIFAYGQTGTGKTFTMEGTKEARGVNFRTLEELFRIIKE-REKLYRYDISVSVLEV 496 (943)
Q Consensus 421 Qe--eVFeev~pLV~svLd-GyNvcIFAYGQTGSGKTyTM~G~~e~~GIIPRal~~LF~~i~~-~~~~~~y~V~VSflEI 496 (943)
|+ +||+++.++|+++|| ||||||||||||||||| ||++..+|..... .. |.|.|++||+||
T Consensus 71 Qe~~~vf~E~~~~i~scLd~GyNvcIfSyGQTGsGKT-------------~ral~q~f~~~~~~~~--~~Y~~tlq~veL 135 (298)
T 2o0a_A 71 SEDKFFTQEYSVYHDMCLNQKKNFNLISLSTTPHGSL-------------RESLIKFLAEKDTIYQ--KQYVITLQFVFL 135 (298)
T ss_dssp CHHHHHHHTTHHHHHHHHHTTCCEEEEEECSSCCHHH-------------HHHHHHHHHSTTSHHH--HHEEEEEEEEEE
T ss_pred ccHHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCcc-------------HHHHHHHHHHhhhhcc--cceEEEEEEEEE
Confidence 99 999999999999999 99999999999999999 9999999987755 43 899999999999
Q ss_pred e-cchhhhccccCCCCCCCcccceEEeCCCCceEcCCceEEEecC-hHHHHHHHHccccccccccCCCccCCCCceeeEE
Q 002276 497 Y-NEQIRDLLAVGSQPGAVSKRLEVRQAGEGMHHVPGLVEAHVNN-ISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHC 574 (943)
Q Consensus 497 Y-NE~I~DLL~~~~~~~~~~k~LeIred~~g~v~V~gLtev~V~S-~eE~~~lL~~G~k~R~~asT~mN~~SSRSHsIft 574 (943)
| ||.++|||..... ...++|+.+.+|.++|.|++.+.|.+ ++|+..++..+...+ .|. +--.|+.
T Consensus 136 y~Ne~~~DLL~~~~~----~~k~eIk~~~~g~~iv~~s~~i~V~~~~edv~~~~~~~~~~~------~~~---~gi~i~k 202 (298)
T 2o0a_A 136 SDDEFSQDMLLDYSH----NDKDSIKLKFEKHSISLDSKLVIIENGLEDLPLNFSCDEHPN------LPH---SGMGIIK 202 (298)
T ss_dssp ECC-CEEETTSCCC----------CEEEECSSCEEEESCCEEESSGGGGSCTTTTCC----------------CEEEEEE
T ss_pred ecCCchHHhcCCCCC----CCcceEEecCCCCEEecccEEEEccccHHHHHHHhhcccccc------cCC---CCceEEE
Confidence 9 9999999973332 12679999999999999999999999 999888874333222 111 1233333
Q ss_pred EEEEEEee---hh----chh--------hh------hhhhcCCCCCcccchHHhhhhcCCCcceeEEEecCCCCcChHhh
Q 002276 575 VMVRRELV---EW----GMH--------KE------QAMASGSSRKNSKLTHLLQDSLGGDSKTLMFVQISPNENDLSET 633 (943)
Q Consensus 575 I~V~~~~~---~~----lVD--------kE------sALa~~sPyRdSKLTrLLQDSLGGNSKTlMIv~ISPs~~~~~ET 633 (943)
+.+-..+. .+ .+| .. .+.. ...+-.|+++-+|+.-|- ..|-++++++.-+.. .
T Consensus 203 ~~~~~~~~~~~~~~~~~~~d~yf~e~~~~~~~~~l~~~~~-~~~~~~spi~~il~~ll~-~tks~~~~~l~~~~~----~ 276 (298)
T 2o0a_A 203 VQFFPRDSKSDGNNDPVPVDFYFIELNNLKSIEQFDKSIF-KKESCETPIALVLKKLIS-DTKSFFLLNLNDSKN----V 276 (298)
T ss_dssp EEEEESCC-------CCCEEEEEEEECSHHHHHHHHHHHH-TC-CCCSHHHHHHHHHHH-HSBCEEEEEECCGGG----H
T ss_pred EEEecCcccccccCCCCceEEEEEEeCCHHHHHHHHhhcc-cccccCCcHHHHHHHHHh-cCcceEEEEecCCCc----h
Confidence 33332110 00 111 11 1222 235678999999987775 688899999975432 2
Q ss_pred HHHHHHHhHhhcccccc
Q 002276 634 LCSLNFASRVRGIELGA 650 (943)
Q Consensus 634 LsTLrFAsRak~Ik~~~ 650 (943)
-.-|..++++..+.+..
T Consensus 277 ~~lL~~s~~i~~~~~~~ 293 (298)
T 2o0a_A 277 NKLLTISEEVQTQLCKR 293 (298)
T ss_dssp HHHHHHHHHHHHHTC--
T ss_pred hHHHHHHHHhhcccCcc
Confidence 33678888888776543
No 30
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.83 E-value=9.8e-21 Score=180.08 Aligned_cols=65 Identities=31% Similarity=0.412 Sum_probs=61.4
Q ss_pred cCCCCCcccchHHhhhhcCCCcceeEEEecCCCCcChHhhHHHHHHHhHhhccccccccccCChH
Q 002276 594 SGSSRKNSKLTHLLQDSLGGDSKTLMFVQISPNENDLSETLCSLNFASRVRGIELGAAKKQLDTS 658 (943)
Q Consensus 594 ~~sPyRdSKLTrLLQDSLGGNSKTlMIv~ISPs~~~~~ETLsTLrFAsRak~Ik~~~~~~~~~~~ 658 (943)
.++||||||||+||||||||||+|+||+||||+..+++||++||+||+||+.|++.+..|.....
T Consensus 20 ~hvPyRdSkLT~lL~dsLggn~~t~~i~~isp~~~~~~eTl~TL~fa~rak~i~n~~~~n~~~~~ 84 (117)
T 3kin_B 20 THVPYRDSKMTRILQDSLGGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSVNLELTA 84 (117)
T ss_dssp SSCCGGGSHHHHHTHHHHHSSSEEEEEEEECCSGGGHHHHHHHHHHHHHHTTCEEEECCCBCCCH
T ss_pred CCCCCcchHHHHHHHHHcCCCccceeeeeeCCCcccHHHHHHHHHHHHHhCcccCCceecCcCCH
Confidence 36899999999999999999999999999999999999999999999999999999998877654
No 31
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus norvegicus} SCOP: c.37.1.9
Probab=99.80 E-value=1.5e-20 Score=174.17 Aligned_cols=65 Identities=29% Similarity=0.379 Sum_probs=61.2
Q ss_pred cCCCCCcccchHHhhhhcCCCcceeEEEecCCCCcChHhhHHHHHHHhHhhccccccccccCChH
Q 002276 594 SGSSRKNSKLTHLLQDSLGGDSKTLMFVQISPNENDLSETLCSLNFASRVRGIELGAAKKQLDTS 658 (943)
Q Consensus 594 ~~sPyRdSKLTrLLQDSLGGNSKTlMIv~ISPs~~~~~ETLsTLrFAsRak~Ik~~~~~~~~~~~ 658 (943)
.++||||||||+||||||||||+|+||+||||+..+++||++||+||+||+.|++.+.+|.....
T Consensus 24 ~hvPyRdSkLT~lL~dsLgGnskt~mi~~vsp~~~~~~ETl~TL~fA~rak~i~~~~~~n~~~~~ 88 (100)
T 2kin_B 24 THVPYRDSKMTRILQDSLDGNCRTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSVNLELTA 88 (100)
T ss_dssp SSCCGGGCHHHHHTHHHHHSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCEEEECCEEECCH
T ss_pred CCCCCccchHHHHHHHHhcCCCceeEEEEeCcccchHHHHHHHHHHHHHHHhccCcceeccCCCH
Confidence 46899999999999999999999999999999999999999999999999999999998876543
No 32
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=98.95 E-value=1.1e-08 Score=110.93 Aligned_cols=181 Identities=19% Similarity=0.304 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHhhcCCEEEEEEeCCCCchhhccCCeeEEeeeccCC
Q 002276 315 CAAEISEASSTIQSKINHQVQLYEHLKIKFIEGTKERKELYNKVLELKGNIRVFCRCRPLNSEETAAGSVMAVDFESVRD 394 (943)
Q Consensus 315 ~~~~i~~~~~~lq~~i~~~~~~~e~l~~kl~~e~~~RrkLhN~lqELKGNIRV~~RVRPl~~~E~~~g~~~~V~~~s~~d 394 (943)
+++.++.....++.++...+..|+...+++.+|...||+|.|.|.|+||.||+|+-+-+-. ......|++. +
T Consensus 11 e~~~~~~~~~~vq~kA~~~E~~Yn~~~dKmeqE~lrRRkLENSIdElKG~IRcFAYi~~~~-----~p~~~~idY~---~ 82 (333)
T 4etp_B 11 EIAALEKEIAALEKEISKQEKFYNDTYNTVCKELLRSRRLENSIIEQKGTMRVYAYVMEQN-----LPENLLFDYE---N 82 (333)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-----CCSSCEEETT---T
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCcEEEEEEECccc-----CCccEEEecc---c
Confidence 3444444555666677777788888999999999999999999999999999999996621 1223455543 3
Q ss_pred CeEEEEeCCcCceeeecceeeCCCC--CcccccccchhhHHHhh-CCcceEEEeeCcccCccccccccCCCCCCccHHhH
Q 002276 395 GELTVISNGAPKKTFKFDAVFGPQA--DQVDVFQDTAPFANSVL-DGYNVCIFAYGQTGTGKTFTMEGTKEARGVNFRTL 471 (943)
Q Consensus 395 ~~i~v~~~g~~~ktF~FD~VF~~~a--sQeeVFeev~pLV~svL-dGyNvcIFAYGQTGSGKTyTM~G~~e~~GIIPRal 471 (943)
..++ +....+.|.|++|++... .+..+|+++...++.++ .+.|+.||..|+.- .+..-
T Consensus 83 ~~It---~~~~~~~y~FnRiIp~~~~~e~~~l~qE~q~y~DmcL~~~~NfslIsis~~~----------------w~~Lr 143 (333)
T 4etp_B 83 GVIT---QGLSEHVYKFNRVIPHLKVSEDCFFTQEYSVYHDMALNQKKNFNLISLSTTP----------------HGSLR 143 (333)
T ss_dssp TEEE---C--CCCEEECSEEEETTTCCHHHHHHHTTHHHHHHHHHTTCCEEEEEEESSC----------------CCHHH
T ss_pred ceEe---ecCCcceEEEeeeechhhcchHHHHHHHHHHHHHHHHccCCCeeEEEecCCC----------------cHHHH
Confidence 3443 334568999999997766 56668889999999999 89999999988652 12334
Q ss_pred HHHHHHHHhhcc--cceeEEEEEEEEEecch-hhhccccCCCCCCCcccceEEe
Q 002276 472 EELFRIIKEREK--LYRYDISVSVLEVYNEQ-IRDLLAVGSQPGAVSKRLEVRQ 522 (943)
Q Consensus 472 ~~LF~~i~~~~~--~~~y~V~VSflEIYNE~-I~DLL~~~~~~~~~~k~LeIre 522 (943)
..|+..+..... .|.|.|.+.||.+-++. ..|||.+........-+|+|.+
T Consensus 144 ~~lL~fi~~k~~~Y~~~y~i~lQ~V~Lse~~~S~DlL~~~~~~~~~~I~lkiee 197 (333)
T 4etp_B 144 ESLIKFLAEKDTIYQKQYVITLQFVFLSDDEFSQDMLLDYSHNDKDSIKLKFEK 197 (333)
T ss_dssp HHHHHHHHSTTCHHHHHEEEEEEEEECCSSSCCEESSCC----------CEEET
T ss_pred HHHHHHHHhcccccccceEEEEEEEEEcCCCchhhhhccccccCCCCceEEeec
Confidence 455555544311 37899999998888776 6999987643222223344444
No 33
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=96.95 E-value=0.19 Score=50.59 Aligned_cols=32 Identities=16% Similarity=0.158 Sum_probs=16.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 209 GDYERLKMSYECQKKELTEAKRTLEELKRENQ 240 (943)
Q Consensus 209 ~e~~kL~~~~e~qk~eL~~~e~~i~eLe~en~ 240 (943)
.++..+...++.+..++..++..+.+++.+..
T Consensus 6 ~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~ 37 (284)
T 1c1g_A 6 KKMQMLKLDKENALDRADEAEADKKAAEDRSK 37 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555544443
No 34
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=96.93 E-value=0.18 Score=50.82 Aligned_cols=24 Identities=17% Similarity=0.147 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 215 KMSYECQKKELTEAKRTLEELKRE 238 (943)
Q Consensus 215 ~~~~e~qk~eL~~~e~~i~eLe~e 238 (943)
+.++..++.++..+...+.+++.+
T Consensus 5 ~~~~~~l~~~~~~~~~~~~~l~~~ 28 (284)
T 1c1g_A 5 KKKMQMLKLDKENALDRADEAEAD 28 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHH
Confidence 333333344444444444443333
No 35
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=96.75 E-value=0.25 Score=50.56 Aligned_cols=135 Identities=14% Similarity=0.124 Sum_probs=72.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccHHHHHHhhHhhhhhHHHHH
Q 002276 209 GDYERLKMSYECQKKELTEAKRTLEELKRENQLKNKEYQETWKSLQELQNELMRKSMHVGSLAFAIEGQVKEKSRWFSSL 288 (943)
Q Consensus 209 ~e~~kL~~~~e~qk~eL~~~e~~i~eLe~en~~K~~E~~e~~~~l~~~q~el~~~~~~v~sL~~~ie~~~~ek~kl~~~L 288 (943)
+.+....+.++.++.++.+...-..+|+++.+.-+..++.....+......|.. +...|+.++
T Consensus 17 ~~~~~~~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~-----------------E~e~~k~K~ 79 (189)
T 2v71_A 17 ELSMKYKQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKY-----------------EVEALKEKL 79 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHH
Confidence 345567778888888888888888888877766555555444444333222222 222233333
Q ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHh
Q 002276 289 RDLTR----RLKIMKMEHINLFEEALAYKKCAAEISEASSTIQSKINHQVQLYEHLKIKFIEGTKERKELYNKVLE 360 (943)
Q Consensus 289 ~~L~~----~l~~~k~e~~~l~~e~~~~~~~~~~i~~~~~~lq~~i~~~~~~~e~l~~kl~~e~~~RrkLhN~lqE 360 (943)
..... .+..++.+...+......++..+.++......+....-.....++++..+|-......--|.+.|.|
T Consensus 80 ~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~E 155 (189)
T 2v71_A 80 EHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELDE 155 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33222 2444444445555555555555555555555544444444445555555555555555555555544
No 36
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=96.25 E-value=0.0077 Score=76.37 Aligned_cols=33 Identities=15% Similarity=0.257 Sum_probs=19.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 208 KGDYERLKMSYECQKKELTEAKRTLEELKRENQ 240 (943)
Q Consensus 208 ~~e~~kL~~~~e~qk~eL~~~e~~i~eLe~en~ 240 (943)
++++..+..+++.++.++..++..+.+++.+..
T Consensus 856 ~~El~~L~~eL~el~~~L~~le~~l~ele~~l~ 888 (1184)
T 1i84_S 856 EEEMQAKDEELQRTKERQQKAEAELKELEQKHT 888 (1184)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666666666666555555443
No 37
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.10 E-value=0.083 Score=66.58 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 213 RLKMSYECQKKELTEAKRTLEELKREN 239 (943)
Q Consensus 213 kL~~~~e~qk~eL~~~e~~i~eLe~en 239 (943)
.++.....+.+++.+|+.++++++.+|
T Consensus 918 ~l~~~~~~LE~kl~eLq~rL~~~e~~n 944 (1080)
T 2dfs_A 918 RYKKLHIGLENKIMQLQRKIDEQNKEY 944 (1080)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555555555555
No 38
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.98 E-value=0.46 Score=50.24 Aligned_cols=8 Identities=13% Similarity=0.621 Sum_probs=3.9
Q ss_pred HHHhHHHh
Q 002276 353 ELYNKVLE 360 (943)
Q Consensus 353 kLhN~lqE 360 (943)
..|+.|-.
T Consensus 179 ~~Yerir~ 186 (256)
T 3na7_A 179 SFYERIRR 186 (256)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34555554
No 39
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=95.94 E-value=0.015 Score=73.81 Aligned_cols=18 Identities=17% Similarity=0.322 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002276 218 YECQKKELTEAKRTLEEL 235 (943)
Q Consensus 218 ~e~qk~eL~~~e~~i~eL 235 (943)
++.+++++.+++.++..+
T Consensus 859 l~~L~~eL~el~~~L~~l 876 (1184)
T 1i84_S 859 MQAKDEELQRTKERQQKA 876 (1184)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333344444444443333
No 40
>4gkp_A Spindle POLE BODY-associated protein VIK1; kinesin motor domain-like fold, microtubule binding protein, KAR3, structural protein; 2.42A {Candida glabrata} PDB: 4gkq_A
Probab=95.91 E-value=0.06 Score=57.91 Aligned_cols=251 Identities=17% Similarity=0.195 Sum_probs=113.7
Q ss_pred HHHhHHHhhcCCEEEEEEeCCCCchhhccCCeeEEeeeccCCCeEEEEeCCcCceeeecceeeCCC--CCcccccccchh
Q 002276 353 ELYNKVLELKGNIRVFCRCRPLNSEETAAGSVMAVDFESVRDGELTVISNGAPKKTFKFDAVFGPQ--ADQVDVFQDTAP 430 (943)
Q Consensus 353 kLhN~lqELKGNIRV~~RVRPl~~~E~~~g~~~~V~~~s~~d~~i~v~~~g~~~ktF~FD~VF~~~--asQeeVFeev~p 430 (943)
-|.|.|.|+||.||.|+-+-+-. ......|++. +..++ +....+.|.|++|.+.. .-++-+|+++..
T Consensus 3 ~LeNSIdElkG~iRcFAYi~e~~-----l~~~~~IdY~---~~tI~---~~~~~~~y~F~RiIp~~~~~e~~ll~qE~~~ 71 (275)
T 4gkp_A 3 MLLNSITELKGCARLFANIIEDE-----ISEKLIVNYS---DESIE---DMKNHKTYKFTKLIQNFSHQNKDLFKEDLHV 71 (275)
T ss_dssp -------------CEEEEEETTT-----SCTTEEEETT---TTEEE---ETTTTEEEECSEEEEECSSSCCCGGGTHHHH
T ss_pred cccccHHHhcCcEEEEEEEcccc-----CCccEEEecc---cceec---cCCCccEEEEEeeeccccCCHHHHHHHHHHH
Confidence 47899999999999999994421 1223456653 44443 23446889999999654 334456678889
Q ss_pred hHHHhh-CCcceEEEeeCcccCccccccccCCCCCCccHHhHHHHHHHHHhhcccceeEEEEEEEEEecchh-hhccccC
Q 002276 431 FANSVL-DGYNVCIFAYGQTGTGKTFTMEGTKEARGVNFRTLEELFRIIKEREKLYRYDISVSVLEVYNEQI-RDLLAVG 508 (943)
Q Consensus 431 LV~svL-dGyNvcIFAYGQTGSGKTyTM~G~~e~~GIIPRal~~LF~~i~~~~~~~~y~V~VSflEIYNE~I-~DLL~~~ 508 (943)
..+.+| .+.|+.||..++.--+ .....++..+... -...|.|.+.|+=+-.+.. .|||...
T Consensus 72 Y~DmCL~k~~NfnlISiS~~~~~----------------~lr~~ll~f~~~~-y~~~y~itlQ~V~Ls~~~~S~Dll~~~ 134 (275)
T 4gkp_A 72 YIDFCLKRRENFNLFSVGSSNIP----------------NTFEKLLAFFKNN-YFDKFVITLQYVMLSDNADSQDLLSNN 134 (275)
T ss_dssp HHHHHHHTTCCEEEEEECCSSCC----------------SHHHHHHHHHHHH-TTTTEEEEEEEEEEC----CEETTCC-
T ss_pred HHHHHhccCCCceEEEecCCCcH----------------HHHHHHHHHHHHh-ccccceEEEEEEEecCCCcccccccCC
Confidence 999888 6999999998875422 1222333333332 2246788888877765554 4888654
Q ss_pred CCCCCCcccceEEeCCCCceEcCCceEEEecChHHHHHHHHccccccccccCCCccCCCCceeeEEEEEEEEeeh-----
Q 002276 509 SQPGAVSKRLEVRQAGEGMHHVPGLVEAHVNNISEVWEVLQTGSNVRAVGSTNANEHSSRSHCMHCVMVRRELVE----- 583 (943)
Q Consensus 509 ~~~~~~~k~LeIred~~g~v~V~gLtev~V~S~eE~~~lL~~G~k~R~~asT~mN~~SSRSHsIftI~V~~~~~~----- 583 (943)
... .....++++-+.+. +.+ +=+.+.+.+..+...+.. ..-+......-.|+.+.+......
T Consensus 135 ~~~-~~d~eI~Lk~e~~s-I~l-dS~~i~i~~~~~~~~~~~----------~~~~~~~~~Gi~IlKfq~~~~~~~e~~pi 201 (275)
T 4gkp_A 135 KDG-GKDVEIKLKIEEST-ISL-GSTLITLDEITDKLQIKK----------KYSQLNHQNGIGLSKFQFFCLQDIEPIPI 201 (275)
T ss_dssp ----------CEEECSSC-EEE-CSCCEEGGGCCSCC--CC----------SCC-----CCEEEEEEEEEETTCSSCCCE
T ss_pred ccc-cCCcceeEEeecce-eee-cceEEEeccCccccchhh----------hccCCCCCCCceEEEEEEEeccCCCCCce
Confidence 321 11112333332221 111 111222222222111100 000001111112333333211100
Q ss_pred ----------hchhhhhhhhcCCCCCcccchHHhhhhcCCCcceeEEEecCCCCcChHhhHHHHHHHhHhhccccc
Q 002276 584 ----------WGMHKEQAMASGSSRKNSKLTHLLQDSLGGDSKTLMFVQISPNENDLSETLCSLNFASRVRGIELG 649 (943)
Q Consensus 584 ----------~lVDkEsALa~~sPyRdSKLTrLLQDSLGGNSKTlMIv~ISPs~~~~~ETLsTLrFAsRak~Ik~~ 649 (943)
..+..-..+.+...+-.|.++-+|+--|. .+|-+++.++.-. .+.-..|..+.++.++++.
T Consensus 202 dfYFiei~~~~t~~~L~~~~s~~~~~~spi~~iLk~LL~-~TKS~flfni~~~----~n~~~lL~ls~~l~~~~~~ 272 (275)
T 4gkp_A 202 DFYFIEIYQPSIYPILKRSTGTESNLNSPLEIVLKKIFH-DTKSAFVFQIDHS----AEVYDILKLSSHLSFIRNP 272 (275)
T ss_dssp EEEEEEECCGGGHHHHHHC--------CHHHHHHHHHHH-HSBCCEEEEESSC----TTHHHHHHHHHHHTTCCCC
T ss_pred eEEEEEecCHHHHHHHHhccCCCCCCCCcHHHHHHHHHh-cCcceEEEEccCc----chHHHHHHHHHHhccccCc
Confidence 00000012222222344888988876665 7899999999643 3334678888998888763
No 41
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=95.81 E-value=0.97 Score=47.76 Aligned_cols=43 Identities=14% Similarity=0.125 Sum_probs=19.0
Q ss_pred hccHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 267 VGSLAFAIEGQVKEKSRWFSSLRDLTRRLKIMKMEHINLFEEA 309 (943)
Q Consensus 267 v~sL~~~ie~~~~ek~kl~~~L~~L~~~l~~~k~e~~~l~~e~ 309 (943)
..+|..+|+...+....+...|..+..++..++.+...+...+
T Consensus 92 ~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l 134 (256)
T 3na7_A 92 LRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEM 134 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455554444444444444444444444444433333333
No 42
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.53 E-value=0.44 Score=65.91 Aligned_cols=73 Identities=14% Similarity=0.190 Sum_probs=47.5
Q ss_pred ccCcchhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccHHHHHHh
Q 002276 204 ERGVKGDYERLKMSYECQ---KKELTEAKRTLEELKRENQLKNKEYQETWKSLQELQNELMRKSMHVGSLAFAIEG 276 (943)
Q Consensus 204 ~~~~~~e~~kL~~~~e~q---k~eL~~~e~~i~eLe~en~~K~~E~~e~~~~l~~~q~el~~~~~~v~sL~~~ie~ 276 (943)
-.++.+...++..=++.+ .++.++|++++.+++.+...|.+|+++++..+...+++-+++...+...+.++++
T Consensus 1912 ~~el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~~~~ 1987 (3245)
T 3vkg_A 1912 RDQLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKNEQANQKLKQMVQDQQAAEIKQKDARELQVQLDV 1987 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355556666665444444 3466778888888888888888888888877777666665555444444444433
No 43
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.48 E-value=0.16 Score=64.07 Aligned_cols=14 Identities=21% Similarity=0.233 Sum_probs=7.6
Q ss_pred HHHHHHHhHHHhhc
Q 002276 349 KERKELYNKVLELK 362 (943)
Q Consensus 349 ~~RrkLhN~lqELK 362 (943)
..+..|..++.+.+
T Consensus 1063 ~~~~~~~~~~~~~~ 1076 (1080)
T 2dfs_A 1063 EETKQLELDLNDER 1076 (1080)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45555666555543
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.37 E-value=0.056 Score=62.68 Aligned_cols=73 Identities=15% Similarity=0.114 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhH
Q 002276 285 FSSLRDLTRRLKIMKMEHINLFEEALAYKKCAAEISEASSTIQSKINHQVQLYEHLKIKFIEGTKERKELYNK 357 (943)
Q Consensus 285 ~~~L~~L~~~l~~~k~e~~~l~~e~~~~~~~~~~i~~~~~~lq~~i~~~~~~~e~l~~kl~~e~~~RrkLhN~ 357 (943)
...++.++++...+..+...+.+++.+..+....+++...+++.+++...+...+++++......+.++|.+.
T Consensus 508 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~ 580 (597)
T 3oja_B 508 NKVFTHLKERQAFKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAK 580 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444444444444444444444455555544444455554444333444444433
No 45
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.35 E-value=0.12 Score=59.88 Aligned_cols=56 Identities=13% Similarity=0.109 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 287 SLRDLTRRLKIMKMEHINLFEEALAYKKCAAEISEASSTIQSKINHQVQLYEHLKI 342 (943)
Q Consensus 287 ~L~~L~~~l~~~k~e~~~l~~e~~~~~~~~~~i~~~~~~lq~~i~~~~~~~e~l~~ 342 (943)
.++.+++.+++++.+...+.++...+++.+.+..+...++++.+....+.+..+.+
T Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 524 ETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444433333333333333333333333333
No 46
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=94.62 E-value=1.3 Score=61.40 Aligned_cols=25 Identities=12% Similarity=0.057 Sum_probs=11.9
Q ss_pred cceeEEEecCCCCcChHhhHHHHHHHhH
Q 002276 615 SKTLMFVQISPNENDLSETLCSLNFASR 642 (943)
Q Consensus 615 SKTlMIv~ISPs~~~~~ETLsTLrFAsR 642 (943)
+.|=+|..+||..+-. -.-++||.+
T Consensus 2643 ~~tPlifilSpG~DP~---~~l~~lA~~ 2667 (3245)
T 3vkg_A 2643 SSSPLLLCSVPGYDAS---SKVDDLALQ 2667 (3245)
T ss_dssp TTSCEECEECTTCCCH---HHHHHHHHH
T ss_pred CCccEEEEeCCCCChH---HHHHHHHHH
Confidence 4455555566654332 233445544
No 47
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=93.48 E-value=0.011 Score=57.72 Aligned_cols=50 Identities=16% Similarity=0.146 Sum_probs=37.6
Q ss_pred eeecceeeCCCCCcccccccchhhHHHhhCCcceEEEeeCcccCcccccc
Q 002276 408 TFKFDAVFGPQADQVDVFQDTAPFANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 408 tF~FD~VF~~~asQeeVFeev~pLV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
.++||.....+..|..+++.+..++.++--.....++-||++|||||+.+
T Consensus 6 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 6 NANLDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp TCCSSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHH
T ss_pred hCccccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHH
Confidence 46788876656678888877777777654333456778999999999987
No 48
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=92.82 E-value=6.5 Score=40.25 Aligned_cols=77 Identities=16% Similarity=0.161 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 002276 224 ELTEAKRTLEELKRENQLKNKEYQETWKSLQELQNELMRKSMHVGSLAFAIEGQVKEKSRWFSSLRDLTRRLKIMKMEHI 303 (943)
Q Consensus 224 eL~~~e~~i~eLe~en~~K~~E~~e~~~~l~~~q~el~~~~~~v~sL~~~ie~~~~ek~kl~~~L~~L~~~l~~~k~e~~ 303 (943)
+|..+++++.+|+..+.....|++.....+...+.+... .+.+|+.++......+..+...|++|......+....-
T Consensus 50 eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~---~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R 126 (189)
T 2v71_A 50 QLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYK---QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKR 126 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 444445555555555544445554444444433333332 25556666655555555555555555555555544433
No 49
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=92.82 E-value=4.6 Score=40.63 Aligned_cols=14 Identities=36% Similarity=0.375 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 002276 219 ECQKKELTEAKRTL 232 (943)
Q Consensus 219 e~qk~eL~~~e~~i 232 (943)
..+.++|.++..++
T Consensus 9 ~~LekQL~E~n~kL 22 (168)
T 3o0z_A 9 SQLQKQLEEANDLL 22 (168)
T ss_dssp -CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444555544443
No 50
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.40 E-value=0.35 Score=55.06 Aligned_cols=74 Identities=23% Similarity=0.482 Sum_probs=44.8
Q ss_pred eecceeeCCCCCcccccccch-hhHH-HhhC--C--cceEEEeeCcccCccccccc--------------cC---CCCCC
Q 002276 409 FKFDAVFGPQADQVDVFQDTA-PFAN-SVLD--G--YNVCIFAYGQTGTGKTFTME--------------GT---KEARG 465 (943)
Q Consensus 409 F~FD~VF~~~asQeeVFeev~-pLV~-svLd--G--yNvcIFAYGQTGSGKTyTM~--------------G~---~e~~G 465 (943)
-+||.|-+-+.--+++.+.+. |+.. ..+. | ..-.|+-||+.|+|||+..- |+ ....|
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~G 248 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLG 248 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCS
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccc
Confidence 456666664433333333332 3321 2232 2 23349999999999997752 21 13468
Q ss_pred ccHHhHHHHHHHHHhhc
Q 002276 466 VNFRTLEELFRIIKERE 482 (943)
Q Consensus 466 IIPRal~~LF~~i~~~~ 482 (943)
--.+.++.+|.......
T Consensus 249 e~e~~ir~lF~~A~~~a 265 (428)
T 4b4t_K 249 EGPRMVRDVFRLARENA 265 (428)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred hhHHHHHHHHHHHHHcC
Confidence 88899999999887654
No 51
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=92.34 E-value=0.026 Score=55.88 Aligned_cols=51 Identities=16% Similarity=0.221 Sum_probs=35.5
Q ss_pred eeeecceeeCCCCCcccccccchhhHHHhhCCcc-eEEEeeCcccCcccccc
Q 002276 407 KTFKFDAVFGPQADQVDVFQDTAPFANSVLDGYN-VCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 407 ktF~FD~VF~~~asQeeVFeev~pLV~svLdGyN-vcIFAYGQTGSGKTyTM 457 (943)
..++||.+...+..+..+++.+..++...-.++. ..|+-||++|+|||+.+
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHH
T ss_pred HcCCHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHH
Confidence 3567887766555666677665556655444432 67889999999999986
No 52
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=91.22 E-value=14 Score=37.29 Aligned_cols=58 Identities=17% Similarity=0.225 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHH
Q 002276 240 QLKNKEYQETWKSLQELQNELMRKSMHVGSLAFAIEGQVKEKSRWFSSLRDLTRRLKIMKM 300 (943)
Q Consensus 240 ~~K~~E~~e~~~~l~~~q~el~~~~~~v~sL~~~ie~~~~ek~kl~~~L~~L~~~l~~~k~ 300 (943)
+.+..|+++....+......|.++ +..|+.+++...+....-...+.+|+.++..+..
T Consensus 47 E~~~rELq~~~~~L~~~k~~Leke---~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~ 104 (168)
T 3o0z_A 47 ESLNRELQERNRILENSKSQTDKD---YYQLQAILEAERRDRGHDSEMIGDLQARITSLQE 104 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777777766 4445666655555444444444444444444433
No 53
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=90.19 E-value=11 Score=35.45 Aligned_cols=31 Identities=19% Similarity=0.149 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 210 DYERLKMSYECQKKELTEAKRTLEELKRENQ 240 (943)
Q Consensus 210 e~~kL~~~~e~qk~eL~~~e~~i~eLe~en~ 240 (943)
.+..|....+.+..|+++.+.++....++-.
T Consensus 4 ~~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~ 34 (111)
T 2v66_B 4 RNRDLQADNQRLKYEVEALKEKLEHQYAQSY 34 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666665554433
No 54
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=89.66 E-value=0.069 Score=57.66 Aligned_cols=51 Identities=16% Similarity=0.375 Sum_probs=33.4
Q ss_pred eeecceeeCCCCCcccccccchhhHHHhhCCcceEEEeeCcccCccccccc
Q 002276 408 TFKFDAVFGPQADQVDVFQDTAPFANSVLDGYNVCIFAYGQTGTGKTFTME 458 (943)
Q Consensus 408 tF~FD~VF~~~asQeeVFeev~pLV~svLdGyNvcIFAYGQTGSGKTyTM~ 458 (943)
.++||.+......+..++..+..++...-.+....|+-||++|+||||.+.
T Consensus 120 ~~tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 120 HIHLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp SCCGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHH
T ss_pred hCCHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHH
Confidence 367776554333445555544455555444445678889999999999973
No 55
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=87.69 E-value=24 Score=35.11 Aligned_cols=29 Identities=21% Similarity=0.121 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHhHHHhhcC
Q 002276 335 QLYEHLKIKFIEGTKERKELYNKVLELKG 363 (943)
Q Consensus 335 ~~~e~l~~kl~~e~~~RrkLhN~lqELKG 363 (943)
.....|...+.+.+..-..|..+|.+||.
T Consensus 115 ~r~~~L~~ql~e~~~~l~~lq~ql~~LK~ 143 (154)
T 2ocy_A 115 ILNKRLTEQLREKDTLLDTLTLQLKNLKK 143 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666666667777777777764
No 56
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.50 E-value=1.3 Score=50.14 Aligned_cols=75 Identities=25% Similarity=0.416 Sum_probs=45.8
Q ss_pred eecceeeCCCCCcccccccch-hhH-HHhhC--C--cceEEEeeCcccCccccccc--------------cC---CCCCC
Q 002276 409 FKFDAVFGPQADQVDVFQDTA-PFA-NSVLD--G--YNVCIFAYGQTGTGKTFTME--------------GT---KEARG 465 (943)
Q Consensus 409 F~FD~VF~~~asQeeVFeev~-pLV-~svLd--G--yNvcIFAYGQTGSGKTyTM~--------------G~---~e~~G 465 (943)
-+||.|-+-+.--+++-+.|. |+. ...+. | +--.|+-||+.|+|||+..- |+ ..-.|
T Consensus 145 v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vG 224 (405)
T 4b4t_J 145 STYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIG 224 (405)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTT
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccc
Confidence 456666654443344444443 443 22333 2 23458999999999998752 21 12457
Q ss_pred ccHHhHHHHHHHHHhhcc
Q 002276 466 VNFRTLEELFRIIKEREK 483 (943)
Q Consensus 466 IIPRal~~LF~~i~~~~~ 483 (943)
--.+.++.+|........
T Consensus 225 ese~~vr~lF~~Ar~~aP 242 (405)
T 4b4t_J 225 EGSRMVRELFVMAREHAP 242 (405)
T ss_dssp HHHHHHHHHHHHHHHTCS
T ss_pred hHHHHHHHHHHHHHHhCC
Confidence 788999999998876543
No 57
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=86.22 E-value=24 Score=33.65 Aligned_cols=13 Identities=31% Similarity=0.501 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 002276 224 ELTEAKRTLEELK 236 (943)
Q Consensus 224 eL~~~e~~i~eLe 236 (943)
++..+...|..++
T Consensus 14 E~~~~~eel~~lk 26 (129)
T 2fxo_A 14 EMASMKEEFTRLK 26 (129)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 58
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=85.53 E-value=26 Score=33.41 Aligned_cols=39 Identities=15% Similarity=0.176 Sum_probs=25.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 208 KGDYERLKMSYECQKKELTEAKRTLEELKRENQLKNKEY 246 (943)
Q Consensus 208 ~~e~~kL~~~~e~qk~eL~~~e~~i~eLe~en~~K~~E~ 246 (943)
+++..++..++..++..+...+....+|+..+..-..+.
T Consensus 12 e~E~~~~~eel~~lke~l~k~e~~r~ele~~~~~l~~Ek 50 (129)
T 2fxo_A 12 EKEMASMKEEFTRLKEALEKSEARRKELEEKMVSLLQEK 50 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777666666666654433333
No 59
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=83.44 E-value=30 Score=32.59 Aligned_cols=35 Identities=14% Similarity=0.109 Sum_probs=19.5
Q ss_pred hccHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHH
Q 002276 267 VGSLAFAIEGQVKEKSRWFSSLRDLTRRLKIMKME 301 (943)
Q Consensus 267 v~sL~~~ie~~~~ek~kl~~~L~~L~~~l~~~k~e 301 (943)
+.+|+.++......+..+...|++|......+...
T Consensus 37 ~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~ 71 (111)
T 2v66_B 37 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERA 71 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 44555555555555555666666666655555443
No 60
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=83.43 E-value=0.3 Score=46.28 Aligned_cols=28 Identities=18% Similarity=0.128 Sum_probs=22.0
Q ss_pred hhHHHhhCCcceEEEeeCcccCcccccc
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
.++..+..+....|+-||.+|+|||+.+
T Consensus 33 ~l~~~l~~~~~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 33 RAIQILSRRTKNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp HHHHHHTSSSSCEEEEESCGGGCHHHHH
T ss_pred HHHHHHhCCCCCceEEECCCCCCHHHHH
Confidence 4555555566778899999999999986
No 61
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=83.03 E-value=28 Score=31.91 Aligned_cols=26 Identities=15% Similarity=0.151 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 212 ERLKMSYECQKKELTEAKRTLEELKR 237 (943)
Q Consensus 212 ~kL~~~~e~qk~eL~~~e~~i~eLe~ 237 (943)
+.++.++..++-+..+...+.+.++.
T Consensus 5 daIKkKm~~lk~e~e~a~drae~~e~ 30 (101)
T 3u1c_A 5 DAIKKKMQMLKLDKENALDRAEQAEA 30 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555554444444443
No 62
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=82.94 E-value=9.9 Score=44.18 Aligned_cols=8 Identities=25% Similarity=0.106 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 002276 219 ECQKKELT 226 (943)
Q Consensus 219 e~qk~eL~ 226 (943)
+.++.+++
T Consensus 67 NELKnqLE 74 (562)
T 3ghg_A 67 NKLKNSLF 74 (562)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 33333333
No 63
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.64 E-value=3.2 Score=47.30 Aligned_cols=75 Identities=21% Similarity=0.347 Sum_probs=47.4
Q ss_pred eeecceeeCCCCCcccccccch-hhHH-HhhC--C--cceEEEeeCcccCccccccc--------------cC---CCCC
Q 002276 408 TFKFDAVFGPQADQVDVFQDTA-PFAN-SVLD--G--YNVCIFAYGQTGTGKTFTME--------------GT---KEAR 464 (943)
Q Consensus 408 tF~FD~VF~~~asQeeVFeev~-pLV~-svLd--G--yNvcIFAYGQTGSGKTyTM~--------------G~---~e~~ 464 (943)
.-+||.|-+-+..-+++.+.+. |+.. ..+. | +--.|+-||+.|+|||++.- |+ ....
T Consensus 177 ~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~v 256 (434)
T 4b4t_M 177 TETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYI 256 (434)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCS
T ss_pred CCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhccc
Confidence 3567777776554444554443 4431 2332 2 23468889999999997752 11 1345
Q ss_pred CccHHhHHHHHHHHHhhc
Q 002276 465 GVNFRTLEELFRIIKERE 482 (943)
Q Consensus 465 GIIPRal~~LF~~i~~~~ 482 (943)
|--.+.++.+|.......
T Consensus 257 Gese~~ir~lF~~A~~~a 274 (434)
T 4b4t_M 257 GEGAKLVRDAFALAKEKA 274 (434)
T ss_dssp SHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHhcC
Confidence 777889999998877654
No 64
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=82.43 E-value=20 Score=33.89 Aligned_cols=18 Identities=22% Similarity=0.514 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002276 224 ELTEAKRTLEELKRENQL 241 (943)
Q Consensus 224 eL~~~e~~i~eLe~en~~ 241 (943)
++..++++|..+..++-.
T Consensus 21 ~I~~LR~qid~~~~e~a~ 38 (119)
T 3ol1_A 21 EMRELRRQVDQLTNDKAR 38 (119)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444445445444433
No 65
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=82.38 E-value=0.36 Score=49.80 Aligned_cols=45 Identities=18% Similarity=0.298 Sum_probs=22.9
Q ss_pred eeecceeeCCCCCcccccccchhhHHHhhCCcceEEEeeCcccCcccccc
Q 002276 408 TFKFDAVFGPQADQVDVFQDTAPFANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 408 tF~FD~VF~~~asQeeVFeev~pLV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
.|+||.+.+. ......+...+..+.. .+..|+-||.+|+|||+..
T Consensus 2 ~~~f~~~ig~----~~~~~~~~~~~~~~~~-~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 2 AEYKDNLLGE----ANSFLEVLEQVSHLAP-LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp --------CC----CHHHHHHHHHHHHHTT-SCSCEEEECCTTSCHHHHH
T ss_pred CcccccceeC----CHHHHHHHHHHHHHhC-CCCCEEEECCCCCcHHHHH
Confidence 4788888763 3333334333444333 3456788999999999875
No 66
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=82.10 E-value=0.41 Score=51.54 Aligned_cols=46 Identities=22% Similarity=0.284 Sum_probs=32.1
Q ss_pred eeecceeeCCCCCcccccccchhhHHHhhCCcce--EEEeeCcccCcccccc
Q 002276 408 TFKFDAVFGPQADQVDVFQDTAPFANSVLDGYNV--CIFAYGQTGTGKTFTM 457 (943)
Q Consensus 408 tF~FD~VF~~~asQeeVFeev~pLV~svLdGyNv--cIFAYGQTGSGKTyTM 457 (943)
.+.||.+++ |+.+...+..++..+..|... .|+-||++|+|||+..
T Consensus 40 ~~~~~~ivG----~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 40 RQASQGMVG----QLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp CSEETTEES----CHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHH
T ss_pred CcchhhccC----hHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHH
Confidence 355666665 444444444566666667654 8899999999999986
No 67
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=81.45 E-value=40 Score=32.62 Aligned_cols=33 Identities=21% Similarity=0.072 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 286 SSLRDLTRRLKIMKMEHINLFEEALAYKKCAAE 318 (943)
Q Consensus 286 ~~L~~L~~~l~~~k~e~~~l~~e~~~~~~~~~~ 318 (943)
.+|++|.+++++..+-..+|.+.+..+++.+.+
T Consensus 98 RKLrELEADLKEKDsMVe~LT~TiG~LrKELEd 130 (167)
T 4gkw_A 98 RKLGELEADLKEKDSMVESLTETIGILRKELEN 130 (167)
T ss_dssp HHTHHHHHTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 356677778877777777777777777776644
No 68
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=80.87 E-value=0.41 Score=47.46 Aligned_cols=44 Identities=16% Similarity=0.281 Sum_probs=26.3
Q ss_pred eecceeeCCCCCcccccccchhhHHHhh-CCcceEEEeeCcccCcccccc
Q 002276 409 FKFDAVFGPQADQVDVFQDTAPFANSVL-DGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 409 F~FD~VF~~~asQeeVFeev~pLV~svL-dGyNvcIFAYGQTGSGKTyTM 457 (943)
++||.+++. ..+..++.. +..++ .+....|+-||++|+|||+.+
T Consensus 25 ~~~~~~~~~-~~~~~~~~~----l~~~~~~~~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 25 ETFTSYYPA-AGNDELIGA----LKSAASGDGVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp CSTTTSCC---CCHHHHHH----HHHHHHTCSCSEEEEECSTTSSHHHHH
T ss_pred CChhhccCC-CCCHHHHHH----HHHHHhCCCCCeEEEECCCCCCHHHHH
Confidence 566665542 223333333 33333 335567889999999999986
No 69
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=80.40 E-value=13 Score=36.22 Aligned_cols=60 Identities=12% Similarity=0.351 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 002276 658 SELLRYKQMVEKTKQELKSRDVQSKRMEDTIHGLDLKLKDKDLKIKSLQDKVKELETQLL 717 (943)
Q Consensus 658 ~el~rlk~~ie~LK~eL~~~~~q~~~lE~~i~~l~~kl~e~d~~i~~LqekikeLE~qL~ 717 (943)
+++.+.++..+.|..++..+...+..+...+..++.++.+...++..+++++.+|+.++.
T Consensus 68 dEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~ 127 (138)
T 3hnw_A 68 DDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIV 127 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566777777777777766666666666666666666666666777777777766653
No 70
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=79.56 E-value=0.67 Score=43.71 Aligned_cols=28 Identities=18% Similarity=0.135 Sum_probs=22.0
Q ss_pred hhHHHhhCCcceEEEeeCcccCcccccc
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
.++..+..+....|+-||.+|+|||+.+
T Consensus 33 ~l~~~l~~~~~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 33 RTIQVLQRRTKNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp HHHHHHTSSSSCEEEEECCTTSCHHHHH
T ss_pred HHHHHHhcCCCCceEEECCCCCCHHHHH
Confidence 4555555566677899999999999987
No 71
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=78.97 E-value=9.9 Score=36.99 Aligned_cols=59 Identities=17% Similarity=0.214 Sum_probs=29.5
Q ss_pred hhhhHhhhhcccccccccccc--cCc-----------cCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 181 EPMLLEAKRFSQLEECESTKD--SGE-----------RGVKGDYERLKMSYECQKKELTEAKRTLEELKREN 239 (943)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~--~~~-----------~~~~~e~~kL~~~~e~qk~eL~~~e~~i~eLe~en 239 (943)
++.|.+.|++=+---..+... +.. ..+..|+.++...++.+..++.++++.+..|+.++
T Consensus 27 ee~L~~vA~~vd~km~ei~~~~~~~~l~~~r~aVLaALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el 98 (138)
T 3hnw_A 27 EEYLQRVASYINNKITEFNKEESYRRMSAELRTDMMYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHEL 98 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666544433344433 332 23445555555555555555555555555554444
No 72
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=78.69 E-value=24 Score=39.62 Aligned_cols=84 Identities=11% Similarity=0.094 Sum_probs=33.4
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccHHHHHHhhHhhhhhHHHH
Q 002276 208 KGDYERLKMSYECQKKELTEAKRTLEELKRENQLKNKEYQETWKSLQELQNELMRKSMHVGSLAFAIEGQVKEKSRWFSS 287 (943)
Q Consensus 208 ~~e~~kL~~~~e~qk~eL~~~e~~i~eLe~en~~K~~E~~e~~~~l~~~q~el~~~~~~v~sL~~~ie~~~~ek~kl~~~ 287 (943)
...+++|.+.+..+++--.+.-.-+..+......+.+...+.-..+-+..++|+++ +.-|+..|..++.....|...
T Consensus 66 ~~rIe~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dndn~~~e~s~eLe~~---i~~lk~~V~~q~~~ir~Lq~~ 142 (390)
T 1deq_A 66 TSRINKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNNDNTFKQINEDLRSR---IEILRRKVIEQVQRINLLQKN 142 (390)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHHHHHH
Confidence 33333444433333333333333333333333333333433344444444555544 333444454444433333333
Q ss_pred HHHHHHH
Q 002276 288 LRDLTRR 294 (943)
Q Consensus 288 L~~L~~~ 294 (943)
|+++..+
T Consensus 143 l~~q~~k 149 (390)
T 1deq_A 143 VRDQLVD 149 (390)
T ss_pred HHHHHHH
Confidence 3333333
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=78.32 E-value=91 Score=35.07 Aligned_cols=47 Identities=9% Similarity=0.045 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 002276 301 EHINLFEEALAYKKCAAEISEASSTIQSKINHQVQLYEHLKIKFIEG 347 (943)
Q Consensus 301 e~~~l~~e~~~~~~~~~~i~~~~~~lq~~i~~~~~~~e~l~~kl~~e 347 (943)
+...+.++....+.....+.+....++..+.+.....++..++|.+.
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (487)
T 3oja_A 429 VQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQEL 475 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHH
Confidence 33333333333344444444444444444444444444444444443
No 74
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=78.30 E-value=5.4 Score=34.96 Aligned_cols=46 Identities=22% Similarity=0.354 Sum_probs=29.0
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 002276 667 VEKTKQELKSRDVQSKRMEDTIHGLDLKLKDKDLKIKSLQDKVKEL 712 (943)
Q Consensus 667 ie~LK~eL~~~~~q~~~lE~~i~~l~~kl~e~d~~i~~LqekikeL 712 (943)
+..|+..|..++.++...+..|..++..+.+++..|..|+.++..+
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555555555566666666666777777777777777666544
No 75
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=78.29 E-value=30 Score=39.07 Aligned_cols=34 Identities=24% Similarity=0.213 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 290 DLTRRLKIMKMEHINLFEEALAYKKCAAEISEAS 323 (943)
Q Consensus 290 ~L~~~l~~~k~e~~~l~~e~~~~~~~~~~i~~~~ 323 (943)
..++..+.++.+...+.++...++..+.++....
T Consensus 432 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (487)
T 3oja_A 432 NAIRDWDMYQHKETQLAEENARLKKLNGEADLAL 465 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhh
Confidence 3444444455554555555444444444444433
No 76
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=78.22 E-value=41 Score=30.71 Aligned_cols=23 Identities=17% Similarity=0.148 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002276 214 LKMSYECQKKELTEAKRTLEELK 236 (943)
Q Consensus 214 L~~~~e~qk~eL~~~e~~i~eLe 236 (943)
++.++..++-+..+...+.+.++
T Consensus 7 iKkKm~~lk~e~e~a~d~ae~~e 29 (101)
T 3u59_A 7 IKKKMQMLKLDKENAIDRAEQAE 29 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433
No 77
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=78.03 E-value=19 Score=32.30 Aligned_cols=76 Identities=13% Similarity=0.198 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHH
Q 002276 226 TEAKRTLEELKRENQLKNKEYQETWKSLQELQNELMRKSMHVGSLAFAIEGQVKEKSRWFSSLRDLTRRLKIMKME 301 (943)
Q Consensus 226 ~~~e~~i~eLe~en~~K~~E~~e~~~~l~~~q~el~~~~~~v~sL~~~ie~~~~ek~kl~~~L~~L~~~l~~~k~e 301 (943)
.+++++|..+..++..-..|...+...+......++.+.....+.+.++.+..+..+.....--+|+.++..++.|
T Consensus 3 ~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~eE 78 (86)
T 3swk_A 3 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEE 78 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555444443333333333333333333333322223334444444444443333333444444444433
No 78
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=76.77 E-value=0.59 Score=48.47 Aligned_cols=50 Identities=22% Similarity=0.332 Sum_probs=29.4
Q ss_pred eeecceeeCCCCCcccccccch-hh-----HHHhhCCcceEEEeeCcccCcccccc
Q 002276 408 TFKFDAVFGPQADQVDVFQDTA-PF-----ANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 408 tF~FD~VF~~~asQeeVFeev~-pL-----V~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
.++||.+.+.+..-..+.+.+. ++ ....--.....|+-||++|+|||+.+
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 5788888875443333333322 11 11111123456889999999999876
No 79
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=76.16 E-value=0.69 Score=49.27 Aligned_cols=48 Identities=19% Similarity=0.285 Sum_probs=28.0
Q ss_pred eeecceeeCCCCCcccccccchhhHHHhhCCcceEEEeeCcccCcccccc
Q 002276 408 TFKFDAVFGPQADQVDVFQDTAPFANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 408 tF~FD~VF~~~asQeeVFeev~pLV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
.|+||..+.. ..+...+..+..++..-- +....++-||++|+|||+.+
T Consensus 7 ~~~f~~fv~g-~~~~~a~~~~~~~~~~~~-~~~~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 7 KYTLENFIVG-EGNRLAYEVVKEALENLG-SLYNPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp TCCSSSCCCC-TTTHHHHHHHHHHHHTTT-TSCSSEEEECSSSSSHHHHH
T ss_pred CCCcccCCCC-CcHHHHHHHHHHHHhCcC-CCCCeEEEECCCCCcHHHHH
Confidence 5788887632 223333433223333211 12346888999999999987
No 80
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=76.00 E-value=0.55 Score=50.17 Aligned_cols=37 Identities=27% Similarity=0.285 Sum_probs=24.0
Q ss_pred cccccccchhhHHHhh-CCcceEEEeeCcccCcccccc
Q 002276 421 QVDVFQDTAPFANSVL-DGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 421 QeeVFeev~pLV~svL-dGyNvcIFAYGQTGSGKTyTM 457 (943)
++..++.+...+..++ .+...+|+-||++|+|||+++
T Consensus 24 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 24 REAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 3444444444444443 344567899999999999986
No 81
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=75.73 E-value=0.71 Score=44.49 Aligned_cols=17 Identities=29% Similarity=0.767 Sum_probs=14.4
Q ss_pred eEEEeeCcccCcccccc
Q 002276 441 VCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 441 vcIFAYGQTGSGKTyTM 457 (943)
-.++-||++|||||+.+
T Consensus 37 ~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp SEEEEESSSTTTTCHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 35667999999999997
No 82
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=75.21 E-value=0.71 Score=47.89 Aligned_cols=21 Identities=24% Similarity=0.189 Sum_probs=18.4
Q ss_pred CCcceEEEeeCcccCcccccc
Q 002276 437 DGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 437 dGyNvcIFAYGQTGSGKTyTM 457 (943)
......|+-||++|+|||+..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALA 81 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHH
Confidence 566778999999999999986
No 83
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=75.06 E-value=0.83 Score=48.56 Aligned_cols=44 Identities=25% Similarity=0.447 Sum_probs=29.0
Q ss_pred eeeecceeeCCCCCcccccccchhhHHHhhCCcceEEEeeCcccCcccccc
Q 002276 407 KTFKFDAVFGPQADQVDVFQDTAPFANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 407 ktF~FD~VF~~~asQeeVFeev~pLV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
..|+|+.+++.+ .+.. -+...++.+....|+-||.+|+|||+..
T Consensus 19 ~~~~f~~i~G~~----~~~~---~l~~~~~~~~~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 19 PVFPFSAIVGQE----DMKL---ALLLTAVDPGIGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp CCCCGGGSCSCH----HHHH---HHHHHHHCGGGCCEEEECCGGGCTTHHH
T ss_pred CCCCchhccChH----HHHH---HHHHHhhCCCCceEEEECCCCccHHHHH
Confidence 458899888743 2222 1333344444455999999999999986
No 84
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=74.60 E-value=1.1 Score=44.52 Aligned_cols=25 Identities=36% Similarity=0.515 Sum_probs=20.5
Q ss_pred hhHHHhhCCcceEEEeeCcccCccccc
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTFT 456 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTyT 456 (943)
..+..+++|.| ++..++||||||.+
T Consensus 43 ~~i~~~~~~~~--~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 43 RAIMPIIEGHD--VLAQAQSGTGKTGT 67 (224)
T ss_dssp HHHHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHHHhcCCC--EEEECCCCCcHHHH
Confidence 45667788877 67789999999988
No 85
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=74.46 E-value=0.76 Score=48.89 Aligned_cols=17 Identities=29% Similarity=0.614 Sum_probs=14.5
Q ss_pred eEEEeeCcccCcccccc
Q 002276 441 VCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 441 vcIFAYGQTGSGKTyTM 457 (943)
..|+-||++|+|||+..
T Consensus 37 ~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQC 53 (293)
T ss_dssp SEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36788999999999975
No 86
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=74.35 E-value=1.2 Score=43.71 Aligned_cols=26 Identities=31% Similarity=0.379 Sum_probs=20.1
Q ss_pred hhHHHhhCCcceEEEeeCcccCcccccc
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
..+..+++|.| ++..++||||||.+.
T Consensus 32 ~~i~~~~~~~~--~lv~apTGsGKT~~~ 57 (206)
T 1vec_A 32 ESIPIALSGRD--ILARAKNGTGKSGAY 57 (206)
T ss_dssp HHHHHHHTTCC--EEEECCSSSTTHHHH
T ss_pred HHHHHHccCCC--EEEECCCCCchHHHH
Confidence 35667788877 567789999999764
No 87
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=74.28 E-value=1.1 Score=50.70 Aligned_cols=46 Identities=17% Similarity=0.173 Sum_probs=32.9
Q ss_pred eeecceeeCCCCCcccccccchhhHHHhhCCcc--eEEEeeCcccCcccccc
Q 002276 408 TFKFDAVFGPQADQVDVFQDTAPFANSVLDGYN--VCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 408 tF~FD~VF~~~asQeeVFeev~pLV~svLdGyN--vcIFAYGQTGSGKTyTM 457 (943)
.|.||.|.+ |+++.+.+..++..+..|.. ..|+-||++|+|||+..
T Consensus 33 ~~~~~~iiG----~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 33 KQAASGLVG----QENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp CSEETTEES----CHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHH
T ss_pred hhchhhccC----HHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHH
Confidence 456777765 55666666666766666653 35778999999999875
No 88
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=73.79 E-value=1.2 Score=43.65 Aligned_cols=26 Identities=31% Similarity=0.514 Sum_probs=20.0
Q ss_pred hhHHHhhCCcceEEEeeCcccCcccccc
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
..+..+++|.| ++..++||||||.+.
T Consensus 30 ~~i~~~~~~~~--~li~~~TGsGKT~~~ 55 (207)
T 2gxq_A 30 AALPLALEGKD--LIGQARTGTGKTLAF 55 (207)
T ss_dssp HHHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHcCCCC--EEEECCCCChHHHHH
Confidence 35567788877 566789999999873
No 89
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=73.11 E-value=0.89 Score=49.76 Aligned_cols=30 Identities=10% Similarity=-0.054 Sum_probs=23.0
Q ss_pred chhhHHHhh-CCcceEEEeeCcccCcccccc
Q 002276 428 TAPFANSVL-DGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 428 v~pLV~svL-dGyNvcIFAYGQTGSGKTyTM 457 (943)
+...+..++ .|-..+|+-||++|+|||.++
T Consensus 32 i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 32 IFLPIYDSLMSSQNKLFYITNADDSTKFQLV 62 (318)
T ss_dssp HHHHHHHHHHTTCCCEEEEECCCSHHHHHHH
T ss_pred HHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 344444444 677889999999999999986
No 90
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=73.04 E-value=82 Score=31.73 Aligned_cols=104 Identities=17% Similarity=0.202 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccHHHHHHhhHh-----------------------hh
Q 002276 225 LTEAKRTLEELKRENQLKNKEYQETWKSLQELQNELMRKSMHVGSLAFAIEGQVK-----------------------EK 281 (943)
Q Consensus 225 L~~~e~~i~eLe~en~~K~~E~~e~~~~l~~~q~el~~~~~~v~sL~~~ie~~~~-----------------------ek 281 (943)
.+.+-.++.+...+-..|+++|+..+...+...+++.-+...+.++..++.--.+ +.
T Consensus 12 ve~v~~~L~e~h~qy~~ks~~yd~l~e~y~r~sqEiq~Kr~AieAF~E~ik~FeeQ~~~qer~~~~~~~~f~~e~~~~E~ 91 (170)
T 3l4q_C 12 VEAVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIKIFEEQGQTQEKSSKEYLERFRREGNEKEM 91 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTGGGSSSSSCCCSSST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcCHHHH
Confidence 3445666777777778888888888888888777777776666665554432111 22
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 282 SRWFSSLRDLTRRLKIMKMEHINLFEEALAYKKCAAEISEASSTIQS 328 (943)
Q Consensus 282 ~kl~~~L~~L~~~l~~~k~e~~~l~~e~~~~~~~~~~i~~~~~~lq~ 328 (943)
..+....+.|+..|+.+......|.+++.........+......++.
T Consensus 92 ~~l~~N~e~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKP 138 (170)
T 3l4q_C 92 QRILLNSERLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKP 138 (170)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 34677778888888888877777777666554444444444333333
No 91
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=73.02 E-value=1.2 Score=45.72 Aligned_cols=46 Identities=22% Similarity=0.287 Sum_probs=28.2
Q ss_pred eeecceeeCCCCCcccccccchhhHHHhh-----C----CcceEEEeeCcccCcccccc
Q 002276 408 TFKFDAVFGPQADQVDVFQDTAPFANSVL-----D----GYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 408 tF~FD~VF~~~asQeeVFeev~pLV~svL-----d----GyNvcIFAYGQTGSGKTyTM 457 (943)
.+.|+.+.+.+. +.+.+..++..+. . .....|+-||++|+|||+.+
T Consensus 8 ~~~~~~i~G~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 8 KTTFADVAGCDE----AKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCCGGGSCSCHH----HHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHH
T ss_pred CCCHHHhcCcHH----HHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHH
Confidence 467888877543 3333333333221 1 12446899999999999886
No 92
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=72.87 E-value=0.68 Score=47.65 Aligned_cols=50 Identities=18% Similarity=0.257 Sum_probs=29.9
Q ss_pred eeecceeeCCCCCcccccccchhh-----HHHhhCCcceEEEeeCcccCcccccc
Q 002276 408 TFKFDAVFGPQADQVDVFQDTAPF-----ANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 408 tF~FD~VF~~~asQeeVFeev~pL-----V~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
.+.|+.+.+.+.....+.+-+..+ ...+--.....|+-||++|+|||+.+
T Consensus 7 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 7 NVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHH
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHH
Confidence 577888888665544444322211 11111122345889999999999986
No 93
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=72.57 E-value=0.96 Score=45.99 Aligned_cols=26 Identities=38% Similarity=0.593 Sum_probs=21.0
Q ss_pred hhHHHhhCCcceEEEeeCcccCcccccc
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
..+..+++|.| ++..++||||||.+.
T Consensus 59 ~ai~~i~~~~~--~li~apTGsGKT~~~ 84 (237)
T 3bor_A 59 RAIIPCIKGYD--VIAQAQSGTGKTATF 84 (237)
T ss_dssp HHHHHHHTTCC--EEECCCSSHHHHHHH
T ss_pred HHHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 45677888977 577899999999874
No 94
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=72.29 E-value=42 Score=30.02 Aligned_cols=37 Identities=24% Similarity=0.311 Sum_probs=22.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 210 DYERLKMSYECQKKELTEAKRTLEELKRENQLKNKEY 246 (943)
Q Consensus 210 e~~kL~~~~e~qk~eL~~~e~~i~eLe~en~~K~~E~ 246 (943)
=+++|..+|++.-...+-++-.+++|+.+|..-..+.
T Consensus 7 lleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~ 43 (81)
T 2jee_A 7 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEV 43 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556667777776666666666666766665433333
No 95
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=71.18 E-value=65 Score=30.41 Aligned_cols=35 Identities=14% Similarity=0.006 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 293 RRLKIMKMEHINLFEEALAYKKCAAEISEASSTIQ 327 (943)
Q Consensus 293 ~~l~~~k~e~~~l~~e~~~~~~~~~~i~~~~~~lq 327 (943)
.+-++.+.+...|...+......+.++.......+
T Consensus 38 ~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~q 72 (112)
T 1x79_B 38 QSSEDSSHQISALVLRAQASEILLEELQQGLSQAK 72 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555555555555555555444433
No 96
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=70.55 E-value=0.82 Score=46.82 Aligned_cols=15 Identities=33% Similarity=0.581 Sum_probs=14.1
Q ss_pred EEeeCcccCcccccc
Q 002276 443 IFAYGQTGTGKTFTM 457 (943)
Q Consensus 443 IFAYGQTGSGKTyTM 457 (943)
|+-||++|||||+.+
T Consensus 52 ~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLA 66 (254)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 899999999999987
No 97
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=70.34 E-value=55 Score=30.48 Aligned_cols=16 Identities=19% Similarity=0.061 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 002276 213 RLKMSYECQKKELTEA 228 (943)
Q Consensus 213 kL~~~~e~qk~eL~~~ 228 (943)
.|..+.-...++|+..
T Consensus 5 ~LLRK~aE~~KqL~~~ 20 (107)
T 2no2_A 5 DLLRKNAEVTKQVSMA 20 (107)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHH
Confidence 3333333334444443
No 98
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=70.05 E-value=1.1 Score=50.60 Aligned_cols=48 Identities=21% Similarity=0.357 Sum_probs=27.5
Q ss_pred eeeecceeeCCCCCcccccccchhhHHHhhCCcceEEEeeCcccCcccccc
Q 002276 407 KTFKFDAVFGPQADQVDVFQDTAPFANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 407 ktF~FD~VF~~~asQeeVFeev~pLV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
..|+||...... ++...+..+..++.. .|..-.+|-||++|+|||+.+
T Consensus 100 ~~~tfd~fv~g~-~n~~a~~~~~~~a~~--~~~~~~lll~Gp~G~GKTtLa 147 (440)
T 2z4s_A 100 PDYTFENFVVGP-GNSFAYHAALEVAKH--PGRYNPLFIYGGVGLGKTHLL 147 (440)
T ss_dssp TTCSGGGCCCCT-TTHHHHHHHHHHHHS--TTSSCCEEEECSSSSSHHHHH
T ss_pred CCCChhhcCCCC-chHHHHHHHHHHHhC--CCCCCeEEEECCCCCCHHHHH
Confidence 467888755322 232233222222222 231335888999999999997
No 99
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=69.83 E-value=1.1 Score=43.82 Aligned_cols=26 Identities=38% Similarity=0.466 Sum_probs=20.1
Q ss_pred hhHHHhhCCcceEEEeeCcccCcccccc
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
..+..+++|.| ++..++||||||++.
T Consensus 40 ~~i~~~~~~~~--~li~~~tGsGKT~~~ 65 (216)
T 3b6e_A 40 EVAQPALEGKN--IIICLPTGSGKTRVA 65 (216)
T ss_dssp HHHHHHHTTCC--EEEECSCHHHHHHHH
T ss_pred HHHHHHhcCCC--EEEEcCCCCCHHHHH
Confidence 35566777876 566899999999986
No 100
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=69.63 E-value=1.2 Score=47.68 Aligned_cols=37 Identities=24% Similarity=0.253 Sum_probs=25.3
Q ss_pred cccccccchhhHHHhhCCcc-e--EEEeeCcccCcccccc
Q 002276 421 QVDVFQDTAPFANSVLDGYN-V--CIFAYGQTGTGKTFTM 457 (943)
Q Consensus 421 QeeVFeev~pLV~svLdGyN-v--cIFAYGQTGSGKTyTM 457 (943)
++...+.+...+..++.|.. . +++-||++|+|||+++
T Consensus 22 r~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 22 REQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTL 61 (389)
T ss_dssp CHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHH
Confidence 44444445555666555533 4 7889999999999986
No 101
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=69.53 E-value=71 Score=37.03 Aligned_cols=39 Identities=15% Similarity=0.232 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 222 KKELTEAKRTLEELKRENQLKNKEYQETWKSLQELQNEL 260 (943)
Q Consensus 222 k~eL~~~e~~i~eLe~en~~K~~E~~e~~~~l~~~q~el 260 (943)
+.+|...+..+...++.|.....+|+.++..++..+.++
T Consensus 8 q~~la~yq~elarvqkana~aka~Ye~~~ae~~a~n~~i 46 (497)
T 3iox_A 8 QAKLTAYQTELARVQKANADAKAAYEAAVAANNAANAAL 46 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 445666666666666666666666666655555444443
No 102
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=69.00 E-value=1.8 Score=43.85 Aligned_cols=26 Identities=31% Similarity=0.503 Sum_probs=20.8
Q ss_pred hhHHHhhCCcceEEEeeCcccCcccccc
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
..+..+++|.| +++.++||||||.+.
T Consensus 58 ~~i~~~~~~~~--~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 58 QAIPVMLHGRE--LLASAPTGSGKTLAF 83 (245)
T ss_dssp HHHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHhCCCC--EEEECCCCCcHHHHH
Confidence 45677788987 577889999999873
No 103
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=68.94 E-value=1.6 Score=43.88 Aligned_cols=26 Identities=27% Similarity=0.505 Sum_probs=19.9
Q ss_pred hhHHHhhCCcceEEEeeCcccCcccccc
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
..+..+++|.| ++..++||||||.+.
T Consensus 54 ~~i~~~~~~~~--~li~a~TGsGKT~~~ 79 (236)
T 2pl3_A 54 QTIGLALQGKD--VLGAAKTGSGKTLAF 79 (236)
T ss_dssp HHHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHhCCCC--EEEEeCCCCcHHHHH
Confidence 35667788877 456689999999873
No 104
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=68.03 E-value=0.98 Score=48.03 Aligned_cols=50 Identities=16% Similarity=0.261 Sum_probs=28.6
Q ss_pred eeecceeeCCCCCcccccccch-hhH-HHhh----CCcceEEEeeCcccCcccccc
Q 002276 408 TFKFDAVFGPQADQVDVFQDTA-PFA-NSVL----DGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 408 tF~FD~VF~~~asQeeVFeev~-pLV-~svL----dGyNvcIFAYGQTGSGKTyTM 457 (943)
.++||.|.+.+..-..+.+.+. |+. ...+ -.....|+-||++|+|||+.+
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 4678877775433333333332 211 0111 123456899999999999886
No 105
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=67.78 E-value=76 Score=29.83 Aligned_cols=71 Identities=10% Similarity=0.098 Sum_probs=31.7
Q ss_pred ccHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 268 GSLAFAIEGQVKEKSRWFSSLRDLTRRLKIMKME-------HINLFEEALAYKKCAAEISEASSTIQSKINHQVQLYE 338 (943)
Q Consensus 268 ~sL~~~ie~~~~ek~kl~~~L~~L~~~l~~~k~e-------~~~l~~e~~~~~~~~~~i~~~~~~lq~~i~~~~~~~e 338 (943)
..|...|.....++.++...|..++..+..++.- +..+..++..+++.+.+..-....++.++..+.+.+.
T Consensus 23 ~~LR~qid~~~~e~a~l~leldn~~~~~edfk~KyE~E~~~r~~~E~di~~lrK~lD~~~l~r~dLE~~iesL~eEl~ 100 (119)
T 3ol1_A 23 RELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQEEIA 100 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555555554444444432 2333333444444444443344445555544444433
No 106
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=67.56 E-value=1.8 Score=42.95 Aligned_cols=26 Identities=19% Similarity=0.382 Sum_probs=20.2
Q ss_pred hhHHHhhCCcceEEEeeCcccCcccccc
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
..+..+++|.| ++..++||||||.+.
T Consensus 43 ~~i~~~~~~~~--~li~~~TGsGKT~~~ 68 (220)
T 1t6n_A 43 ECIPQAILGMD--VLCQAKSGMGKTAVF 68 (220)
T ss_dssp HHHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHhCCCC--EEEECCCCCchhhhh
Confidence 45667788877 566679999999875
No 107
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=67.50 E-value=6 Score=45.16 Aligned_cols=73 Identities=23% Similarity=0.408 Sum_probs=39.3
Q ss_pred eecceeeCCCCCcccccccch-hhH-HHhhCCc----ceEEEeeCcccCcccccccc--------------C---CCCCC
Q 002276 409 FKFDAVFGPQADQVDVFQDTA-PFA-NSVLDGY----NVCIFAYGQTGTGKTFTMEG--------------T---KEARG 465 (943)
Q Consensus 409 F~FD~VF~~~asQeeVFeev~-pLV-~svLdGy----NvcIFAYGQTGSGKTyTM~G--------------~---~e~~G 465 (943)
.+||.|-+-+..-.++.+.|. |+. ...+..+ --.|+-||+.|+|||++.-- + ..-.|
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~G 257 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIG 257 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSS
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccch
Confidence 456666554333333333332 333 2233322 34689999999999987521 1 12245
Q ss_pred ccHHhHHHHHHHHHhh
Q 002276 466 VNFRTLEELFRIIKER 481 (943)
Q Consensus 466 IIPRal~~LF~~i~~~ 481 (943)
--.+.+..+|......
T Consensus 258 ese~~ir~~F~~A~~~ 273 (437)
T 4b4t_L 258 ESARIIREMFAYAKEH 273 (437)
T ss_dssp HHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhc
Confidence 5566666777665543
No 108
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=66.78 E-value=58 Score=30.87 Aligned_cols=19 Identities=16% Similarity=0.319 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002276 319 ISEASSTIQSKINHQVQLY 337 (943)
Q Consensus 319 i~~~~~~lq~~i~~~~~~~ 337 (943)
++.....+...+..+...|
T Consensus 87 lE~eL~~~r~e~~~ql~EY 105 (129)
T 3tnu_B 87 LEEALQKAKQDMARLLREY 105 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHH
Confidence 3333333333343333333
No 109
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=66.50 E-value=2.2 Score=43.25 Aligned_cols=19 Identities=26% Similarity=0.338 Sum_probs=16.3
Q ss_pred cceEEEeeCcccCcccccc
Q 002276 439 YNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 439 yNvcIFAYGQTGSGKTyTM 457 (943)
....|+-||++|+|||+..
T Consensus 38 ~~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCCEEEEESCTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 4456899999999999986
No 110
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=66.29 E-value=1.9 Score=45.12 Aligned_cols=20 Identities=30% Similarity=0.305 Sum_probs=16.5
Q ss_pred CcceEEEeeCcccCcccccc
Q 002276 438 GYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 438 GyNvcIFAYGQTGSGKTyTM 457 (943)
.....|+-||++|+|||++.
T Consensus 65 ~~~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHH
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 34457899999999999986
No 111
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=65.96 E-value=2.2 Score=42.67 Aligned_cols=26 Identities=35% Similarity=0.507 Sum_probs=20.5
Q ss_pred hhHHHhhCCcceEEEeeCcccCcccccc
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
..+..+++|.|+ +..++||||||.+.
T Consensus 49 ~~i~~~~~~~~~--l~~apTGsGKT~~~ 74 (228)
T 3iuy_A 49 QAWPIILQGIDL--IVVAQTGTGKTLSY 74 (228)
T ss_dssp HHHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHHhCCCCE--EEECCCCChHHHHH
Confidence 456777889875 66789999999874
No 112
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=65.89 E-value=27 Score=33.98 Aligned_cols=27 Identities=19% Similarity=0.075 Sum_probs=7.0
Q ss_pred HHHHHHHHhHHHHHHHHHhHHHhhcCC
Q 002276 338 EHLKIKFIEGTKERKELYNKVLELKGN 364 (943)
Q Consensus 338 e~l~~kl~~e~~~RrkLhN~lqELKGN 364 (943)
+.|...+.+.+..-..+..+|++||.-
T Consensus 106 ~~L~~ql~e~e~ll~~lq~QL~~LK~v 132 (135)
T 2e7s_A 106 KRLTEQLREKDMLLDTLTLQLKNLKKV 132 (135)
T ss_dssp HHHHHTTTHHHHCC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555556666777777653
No 113
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=65.66 E-value=2.2 Score=43.51 Aligned_cols=26 Identities=31% Similarity=0.483 Sum_probs=20.4
Q ss_pred hhHHHhhCCcceEEEeeCcccCcccccc
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
..+..+++|.|+ +..++||||||.+.
T Consensus 52 ~~i~~i~~~~~~--l~~a~TGsGKT~~~ 77 (253)
T 1wrb_A 52 NAIPAILEHRDI--MACAQTGSGKTAAF 77 (253)
T ss_dssp HHHHHHHTTCCE--EEECCTTSSHHHHH
T ss_pred HHHHHHhCCCCE--EEECCCCChHHHHH
Confidence 466778889874 56679999999874
No 114
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=64.24 E-value=85 Score=28.54 Aligned_cols=19 Identities=21% Similarity=0.127 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 002276 284 WFSSLRDLTRRLKIMKMEH 302 (943)
Q Consensus 284 l~~~L~~L~~~l~~~k~e~ 302 (943)
....|..|+.++..+..+.
T Consensus 42 ~E~ei~sL~kKiq~lE~el 60 (101)
T 3u59_A 42 LEEEQQGLQKKLKGTEDEV 60 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444333
No 115
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=64.22 E-value=46 Score=33.00 Aligned_cols=42 Identities=26% Similarity=0.294 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 212 ERLKMSYECQKKELTEAKRTLEELKRENQLKNKEYQETWKSL 253 (943)
Q Consensus 212 ~kL~~~~e~qk~eL~~~e~~i~eLe~en~~K~~E~~e~~~~l 253 (943)
+.+...++.++++++.++.+|..++.+.+.|.+..+.....+
T Consensus 64 ~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl 105 (152)
T 3a7p_A 64 DALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLNAAL 105 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455668888888888888888888877777666654433333
No 116
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=63.80 E-value=58 Score=38.03 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 290 DLTRRLKIMKMEHINLFEEALAYKKCAAEISEASSTI 326 (943)
Q Consensus 290 ~L~~~l~~~k~e~~~l~~e~~~~~~~~~~i~~~~~~l 326 (943)
+|++.+..++.+...-...+..|+.-++++....+.|
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRL 150 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRL 150 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555554444444445555444444333333
No 117
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=63.71 E-value=2.4 Score=40.86 Aligned_cols=21 Identities=33% Similarity=0.308 Sum_probs=16.5
Q ss_pred CCcceEEEeeCcccCcccccc
Q 002276 437 DGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 437 dGyNvcIFAYGQTGSGKTyTM 457 (943)
.+....++-||++|+|||+.+
T Consensus 35 ~~~~~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 35 RKNIPHLLFSGPPGTGKTATA 55 (226)
T ss_dssp TTCCCCEEEECSTTSSHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 343334999999999999986
No 118
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=63.64 E-value=2.8 Score=47.40 Aligned_cols=28 Identities=25% Similarity=0.328 Sum_probs=22.7
Q ss_pred hhHHHhhCCcceEEEeeCcccCcccccc
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
+++..++..-...|.-.|+||||||.||
T Consensus 157 ~~L~~l~~~~ggii~I~GpnGSGKTTlL 184 (418)
T 1p9r_A 157 DNFRRLIKRPHGIILVTGPTGSGKSTTL 184 (418)
T ss_dssp HHHHHHHTSSSEEEEEECSTTSCHHHHH
T ss_pred HHHHHHHHhcCCeEEEECCCCCCHHHHH
Confidence 3566666666678889999999999997
No 119
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=63.20 E-value=51 Score=31.34 Aligned_cols=23 Identities=17% Similarity=0.367 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 002276 316 AAEISEASSTIQSKINHQVQLYE 338 (943)
Q Consensus 316 ~~~i~~~~~~lq~~i~~~~~~~e 338 (943)
+..++.....+...+..+...|+
T Consensus 86 i~~lE~eL~~~r~em~~ql~EYq 108 (131)
T 3tnu_A 86 IGSVEEQLAQLRCEMEQQNQEYK 108 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444433333
No 120
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=63.20 E-value=2.7 Score=45.27 Aligned_cols=26 Identities=38% Similarity=0.590 Sum_probs=21.4
Q ss_pred hhHHHhhCCcceEEEeeCcccCcccccc
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
..+..++.|.+ ++..++||||||.+.
T Consensus 69 ~~i~~~~~~~~--~lv~a~TGsGKT~~~ 94 (414)
T 3eiq_A 69 RAILPCIKGYD--VIAQAQSGTGKTATF 94 (414)
T ss_dssp HHHHHHHTTCC--EEECCCSCSSSHHHH
T ss_pred HHhHHHhCCCC--EEEECCCCCcccHHH
Confidence 45677888988 577899999999874
No 121
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=63.15 E-value=2.5 Score=45.01 Aligned_cols=28 Identities=29% Similarity=0.242 Sum_probs=21.2
Q ss_pred hhHHHhhCCcceEEEeeCcccCcccccc
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
..+..++.|..-.++++++||||||.+.
T Consensus 121 ~ai~~il~~~~~~~l~~a~TGsGKT~a~ 148 (300)
T 3fmo_B 121 NALPLMLAEPPQNLIAQSQSGTGKTAAF 148 (300)
T ss_dssp HHHHHHTSSSCCCEEEECCTTSSHHHHH
T ss_pred HHHHHHHcCCCCeEEEECCCCCCccHHH
Confidence 3566778884445788999999999874
No 122
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=63.10 E-value=1.9 Score=44.73 Aligned_cols=26 Identities=31% Similarity=0.592 Sum_probs=20.8
Q ss_pred hhHHHhhCCcceEEEeeCcccCcccccc
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
..+..++.|.| +++.++||||||.+.
T Consensus 83 ~~i~~~~~~~~--~lv~a~TGsGKT~~~ 108 (262)
T 3ly5_A 83 KSIRPLLEGRD--LLAAAKTGSGKTLAF 108 (262)
T ss_dssp HHHHHHHHTCC--CEECCCTTSCHHHHH
T ss_pred HHHHHHhCCCc--EEEEccCCCCchHHH
Confidence 45677788877 577899999999873
No 123
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=62.99 E-value=2.6 Score=42.41 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=19.5
Q ss_pred hhHHHhhCCcceEEEeeCcccCccccc
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTFT 456 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTyT 456 (943)
..+..+++|.|+ +..++||||||.+
T Consensus 53 ~~i~~~~~~~~~--l~~a~TGsGKT~~ 77 (230)
T 2oxc_A 53 KAIPLGRCGLDL--IVQAKSGTGKTCV 77 (230)
T ss_dssp HHHHHHHTTCCE--EEECCTTSSHHHH
T ss_pred HHHHHHhCCCCE--EEECCCCCcHHHH
Confidence 356677888874 5577999999987
No 124
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=62.39 E-value=1.5 Score=45.80 Aligned_cols=16 Identities=31% Similarity=0.503 Sum_probs=14.5
Q ss_pred EEEeeCcccCcccccc
Q 002276 442 CIFAYGQTGTGKTFTM 457 (943)
Q Consensus 442 cIFAYGQTGSGKTyTM 457 (943)
.|+-||++|||||+.+
T Consensus 75 gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLA 90 (278)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCcChHHHHH
Confidence 3899999999999986
No 125
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=62.15 E-value=95 Score=28.38 Aligned_cols=18 Identities=11% Similarity=0.257 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002276 284 WFSSLRDLTRRLKIMKME 301 (943)
Q Consensus 284 l~~~L~~L~~~l~~~k~e 301 (943)
....|..|+.++..+..+
T Consensus 42 ~E~Ei~sL~kk~~~lE~e 59 (101)
T 3u1c_A 42 LEDDIVQLEKQLRVTEDS 59 (101)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 126
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=61.95 E-value=2.8 Score=42.57 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=19.4
Q ss_pred hhHHHhhCCcceEEEeeCcccCcccccc
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
.++..+..|-+ ++..|+||||||..+
T Consensus 68 ~~i~~i~~g~~--~~i~g~TGsGKTt~~ 93 (235)
T 3llm_A 68 EILEAISQNSV--VIIRGATGCGKTTQV 93 (235)
T ss_dssp HHHHHHHHCSE--EEEECCTTSSHHHHH
T ss_pred HHHHHHhcCCE--EEEEeCCCCCcHHhH
Confidence 45666667754 567899999999765
No 127
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=61.88 E-value=2.8 Score=46.36 Aligned_cols=28 Identities=29% Similarity=0.331 Sum_probs=21.4
Q ss_pred hhHHHhhCCcceEEEeeCcccCcccccc
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
+.+.+++.--...|.-.|+||||||.||
T Consensus 113 ~~l~~l~~~~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 113 EVFKRVSDVPRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp HHHHHHHHCSSEEEEEECSTTSCHHHHH
T ss_pred HHHHHHHhCCCCEEEEECCCCCCHHHHH
Confidence 3455555555568888899999999997
No 128
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=61.77 E-value=1.3e+02 Score=29.69 Aligned_cols=47 Identities=23% Similarity=0.248 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHhh
Q 002276 315 CAAEISEASSTIQSKINHQVQLYEHLKIKFIEGTKERKELYNKVLEL 361 (943)
Q Consensus 315 ~~~~i~~~~~~lq~~i~~~~~~~e~l~~kl~~e~~~RrkLhN~lqEL 361 (943)
.+.-+.......+..+.+....+++.+.++.+-...|++|...++-|
T Consensus 101 L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi~sL 147 (152)
T 4fla_A 101 LARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQSL 147 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 33444444455555566666677778888888889999998887765
No 129
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=61.33 E-value=2 Score=46.06 Aligned_cols=37 Identities=30% Similarity=0.396 Sum_probs=25.7
Q ss_pred cccccccchhhHHHhhCCc-ceEEEeeCcccCcccccc
Q 002276 421 QVDVFQDTAPFANSVLDGY-NVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 421 QeeVFeev~pLV~svLdGy-NvcIFAYGQTGSGKTyTM 457 (943)
++...+.+...+..++.|. ..+|+-||++|+|||+++
T Consensus 25 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 25 REDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 4444555555566655543 458999999999999976
No 130
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=61.10 E-value=3 Score=42.97 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=19.8
Q ss_pred hhHHHhhCCcceEEEeeCcccCcccccc
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
..+..+++|.|+ +..++||||||.+.
T Consensus 72 ~~i~~i~~~~~~--lv~a~TGsGKT~~~ 97 (249)
T 3ber_A 72 EAIPLALQGRDI--IGLAETGSGKTGAF 97 (249)
T ss_dssp HHHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHHhCCCCE--EEEcCCCCCchhHh
Confidence 356677888774 55679999999874
No 131
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=61.02 E-value=2.9 Score=42.49 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=19.5
Q ss_pred hhHHHhhCCcceEEEeeCcccCcccccc
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
..+..+++|.|+ ++.++||||||.+.
T Consensus 58 ~~i~~~~~g~~~--l~~apTGsGKT~~~ 83 (242)
T 3fe2_A 58 QGWPVALSGLDM--VGVAQTGSGKTLSY 83 (242)
T ss_dssp HHHHHHHHTCCE--EEEECTTSCHHHHH
T ss_pred HHHHHHhCCCCE--EEECCCcCHHHHHH
Confidence 355667789875 45569999999884
No 132
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=60.81 E-value=1.6 Score=46.41 Aligned_cols=20 Identities=50% Similarity=0.640 Sum_probs=16.6
Q ss_pred CcceEEEeeCcccCcccccc
Q 002276 438 GYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 438 GyNvcIFAYGQTGSGKTyTM 457 (943)
+...+|+-||++|+|||+.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHH
Confidence 33557889999999999886
No 133
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=60.74 E-value=84 Score=27.47 Aligned_cols=56 Identities=18% Similarity=0.164 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 002276 663 YKQMVEKTKQELKSRDVQSKRMEDTIHGLDLKLKDKDLKIKSLQDKVKELETQLLV 718 (943)
Q Consensus 663 lk~~ie~LK~eL~~~~~q~~~lE~~i~~l~~kl~e~d~~i~~LqekikeLE~qL~~ 718 (943)
++..+..|+.+......+...++..+...+......+..+..|+.++..+|..+..
T Consensus 4 ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~ 59 (81)
T 1ic2_A 4 IKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDK 59 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 45556667777777666667777777777777777777888888888888877743
No 134
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=60.54 E-value=2.1 Score=42.68 Aligned_cols=26 Identities=35% Similarity=0.452 Sum_probs=19.8
Q ss_pred hhHHHhhCCcceEEEeeCcccCcccccc
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
..+..+++|.|+ +..++||||||.+.
T Consensus 33 ~~i~~~~~~~~~--lv~a~TGsGKT~~~ 58 (219)
T 1q0u_A 33 RIIPGALRGESM--VGQSQTGTGKTHAY 58 (219)
T ss_dssp HHHHHHHHTCCE--EEECCSSHHHHHHH
T ss_pred HHHHHHhCCCCE--EEECCCCChHHHHH
Confidence 355667788775 56789999999873
No 135
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=60.27 E-value=2.6 Score=39.68 Aligned_cols=33 Identities=12% Similarity=0.086 Sum_probs=21.1
Q ss_pred ccchhhHHHhhCCcceEEEeeCcccCcccccccc
Q 002276 426 QDTAPFANSVLDGYNVCIFAYGQTGTGKTFTMEG 459 (943)
Q Consensus 426 eev~pLV~svLdGyNvcIFAYGQTGSGKTyTM~G 459 (943)
..+...+..+.. .+..|+-||.+|+|||+....
T Consensus 14 ~~l~~~~~~~~~-~~~~vll~G~~GtGKt~lA~~ 46 (143)
T 3co5_A 14 QEMNREVEAAAK-RTSPVFLTGEAGSPFETVARY 46 (143)
T ss_dssp HHHHHHHHHHHT-CSSCEEEEEETTCCHHHHHGG
T ss_pred HHHHHHHHHHhC-CCCcEEEECCCCccHHHHHHH
Confidence 334444444443 234577799999999998643
No 136
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=60.24 E-value=76 Score=28.83 Aligned_cols=32 Identities=9% Similarity=0.132 Sum_probs=20.6
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 207 VKGDYERLKMSYECQKKELTEAKRTLEELKRE 238 (943)
Q Consensus 207 ~~~e~~kL~~~~e~qk~eL~~~e~~i~eLe~e 238 (943)
+..+.+.+...|..++.++..+..++..++.+
T Consensus 4 ~~~e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~ 35 (117)
T 2zqm_A 4 IPPQVQAMLGQLESYQQQLQLVVQQKQKVQLE 35 (117)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777777777777766666666543
No 137
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=60.03 E-value=1.1e+02 Score=34.09 Aligned_cols=6 Identities=33% Similarity=0.446 Sum_probs=2.6
Q ss_pred eeecCC
Q 002276 173 VSINED 178 (943)
Q Consensus 173 ~~~~~~ 178 (943)
++|+.+
T Consensus 278 ~~I~~~ 283 (471)
T 3mq9_A 278 AGINAA 283 (471)
T ss_dssp EEEBSS
T ss_pred EEEECC
Confidence 344444
No 138
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=59.82 E-value=1.6 Score=45.54 Aligned_cols=50 Identities=16% Similarity=0.345 Sum_probs=28.2
Q ss_pred eeecceeeCCCCCcccccccch-hhH-HHhhCC---cceEEEeeCcccCcccccc
Q 002276 408 TFKFDAVFGPQADQVDVFQDTA-PFA-NSVLDG---YNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 408 tF~FD~VF~~~asQeeVFeev~-pLV-~svLdG---yNvcIFAYGQTGSGKTyTM 457 (943)
..+|+.+.+.+..-..+.+.+. |+. ..++.| ....|+-||++|+|||+.+
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 4577877774332222222221 221 111222 3467899999999999976
No 139
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=59.59 E-value=2.3 Score=45.69 Aligned_cols=22 Identities=41% Similarity=0.569 Sum_probs=16.3
Q ss_pred hCCcceEEEeeCcccCcccccc
Q 002276 436 LDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 436 LdGyNvcIFAYGQTGSGKTyTM 457 (943)
-.|--..++-||+.|+|||+++
T Consensus 42 ~~g~~~~~ll~Gp~G~GKTtla 63 (340)
T 1sxj_C 42 DEGKLPHLLFYGPPGTGKTSTI 63 (340)
T ss_dssp HTTCCCCEEEECSSSSSHHHHH
T ss_pred hcCCCceEEEECCCCCCHHHHH
Confidence 3453223777999999999997
No 140
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=59.41 E-value=3.5 Score=44.56 Aligned_cols=28 Identities=32% Similarity=0.466 Sum_probs=20.9
Q ss_pred hhH-HHhhCC---cceEEEe--eCcccCcccccc
Q 002276 430 PFA-NSVLDG---YNVCIFA--YGQTGTGKTFTM 457 (943)
Q Consensus 430 pLV-~svLdG---yNvcIFA--YGQTGSGKTyTM 457 (943)
..+ ..+..| -..+++- ||..|+|||+.+
T Consensus 36 ~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 36 RIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp HHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHH
T ss_pred HHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHH
Confidence 444 555555 4567888 999999999886
No 141
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=59.39 E-value=1.3 Score=48.25 Aligned_cols=20 Identities=40% Similarity=0.577 Sum_probs=16.9
Q ss_pred CcceEEEeeCcccCcccccc
Q 002276 438 GYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 438 GyNvcIFAYGQTGSGKTyTM 457 (943)
+....|+-||++|+|||+.+
T Consensus 115 ~~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHH
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 44567899999999999886
No 142
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=59.34 E-value=1.2e+02 Score=34.09 Aligned_cols=14 Identities=29% Similarity=0.487 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHH
Q 002276 287 SLRDLTRRLKIMKM 300 (943)
Q Consensus 287 ~L~~L~~~l~~~k~ 300 (943)
-.++|++++..+|.
T Consensus 114 ~s~eLe~~i~~lk~ 127 (390)
T 1deq_A 114 INEDLRSRIEILRR 127 (390)
T ss_pred HHHHHHHHHHHHHH
Confidence 33345555554443
No 143
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=58.99 E-value=42 Score=31.98 Aligned_cols=31 Identities=26% Similarity=0.215 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 216 MSYECQKKELTEAKRTLEELKRENQLKNKEY 246 (943)
Q Consensus 216 ~~~e~qk~eL~~~e~~i~eLe~en~~K~~E~ 246 (943)
..|+.|+.++..++..++.+..|.+.-...+
T Consensus 15 ~~Ie~Lkreie~lk~ele~l~~E~q~~v~ql 45 (120)
T 3i00_A 15 HLIERLYREISGLKAQLENMKTESQRVVLQL 45 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666665555555655555444444
No 144
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=58.58 E-value=2.8 Score=44.53 Aligned_cols=44 Identities=25% Similarity=0.318 Sum_probs=28.8
Q ss_pred ecceeeCCCCCcccccccchhhHHHhh--CCcceEEEeeCcccCcccccc
Q 002276 410 KFDAVFGPQADQVDVFQDTAPFANSVL--DGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 410 ~FD~VF~~~asQeeVFeev~pLV~svL--dGyNvcIFAYGQTGSGKTyTM 457 (943)
+|+.+.+ ++.+.+.+...+..+. .+....|+-||.+|+|||+..
T Consensus 27 ~~~~iiG----~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 27 NFDGYIG----QESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp SGGGCCS----CHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHH
T ss_pred CHHHhCC----hHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHH
Confidence 4555554 4455555555555543 344457899999999999876
No 145
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=58.38 E-value=3.6 Score=46.81 Aligned_cols=44 Identities=23% Similarity=0.403 Sum_probs=30.0
Q ss_pred ecceeeCCCCCcccccccchhhHHHhhCCcceEEEeeCcccCcccccc
Q 002276 410 KFDAVFGPQADQVDVFQDTAPFANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 410 ~FD~VF~~~asQeeVFeev~pLV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
+||.+++ |+.+......+...+-.|.-..|+-||++|+|||+..
T Consensus 24 ~l~~ivG----q~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 24 NLAQYIG----QQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLA 67 (447)
T ss_dssp STTTCCS----CHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHH
T ss_pred CHHHhCC----cHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHH
Confidence 3455444 5666654445555555565568999999999999876
No 146
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=58.02 E-value=24 Score=31.60 Aligned_cols=34 Identities=18% Similarity=0.176 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhHHHhhcC
Q 002276 330 INHQVQLYEHLKIKFIEGTKERKELYNKVLELKG 363 (943)
Q Consensus 330 i~~~~~~~e~l~~kl~~e~~~RrkLhN~lqELKG 363 (943)
+.......++++.+|..|...|..+.|.+.-||.
T Consensus 23 ~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~Lrk 56 (86)
T 3swk_A 23 RDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQ 56 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333344455666666666666666666666654
No 147
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=57.75 E-value=3.9 Score=45.78 Aligned_cols=27 Identities=30% Similarity=0.231 Sum_probs=21.9
Q ss_pred hhHHHhhCCcceEEEeeCcccCccccc
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTFT 456 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTyT 456 (943)
..+..++.|.+-.++..|+||||||.+
T Consensus 121 ~ai~~il~~~~~~~l~~a~TGsGKT~~ 147 (479)
T 3fmp_B 121 NALPLMLAEPPQNLIAQSQSGTGKTAA 147 (479)
T ss_dssp HHHHHHTSBSCCEEEEECCSSSSHHHH
T ss_pred HHHHHHHcCCCCcEEEEcCCCCchhHH
Confidence 356677788667789999999999987
No 148
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=57.72 E-value=3.6 Score=44.53 Aligned_cols=26 Identities=35% Similarity=0.552 Sum_probs=20.5
Q ss_pred hhHHHhhCCcceEEEeeCcccCcccccc
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
..+..+++|.| ++..++||||||.+.
T Consensus 66 ~ai~~i~~~~~--~lv~a~TGsGKT~~~ 91 (410)
T 2j0s_A 66 RAIKQIIKGRD--VIAQSQSGTGKTATF 91 (410)
T ss_dssp HHHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHHhCCCC--EEEECCCCCCchHHH
Confidence 35677888988 567789999999764
No 149
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=57.37 E-value=1.1e+02 Score=28.91 Aligned_cols=18 Identities=22% Similarity=0.322 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002276 217 SYECQKKELTEAKRTLEE 234 (943)
Q Consensus 217 ~~e~qk~eL~~~e~~i~e 234 (943)
++..|+..|..+++.+.+
T Consensus 25 ei~~L~~~L~~AEeaL~~ 42 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVA 42 (110)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555555444
No 150
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=56.72 E-value=1.1e+02 Score=27.37 Aligned_cols=6 Identities=17% Similarity=0.296 Sum_probs=2.1
Q ss_pred HHHHHH
Q 002276 295 LKIMKM 300 (943)
Q Consensus 295 l~~~k~ 300 (943)
++++|.
T Consensus 29 ieELKe 34 (81)
T 2jee_A 29 IEELKE 34 (81)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 151
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=56.71 E-value=2.1e+02 Score=30.55 Aligned_cols=156 Identities=10% Similarity=0.154 Sum_probs=0.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhhccHHHHHHhhHhhhhh-
Q 002276 207 VKGDYERLKMSYECQKKELTEA-KRTLEELKRENQLKNKEYQETW-KSLQELQNELMRKSMHVGSLAFAIEGQVKEKSR- 283 (943)
Q Consensus 207 ~~~e~~kL~~~~e~qk~eL~~~-e~~i~eLe~en~~K~~E~~e~~-~~l~~~q~el~~~~~~v~sL~~~ie~~~~ek~k- 283 (943)
+..+.+.+...++-...++... .+.++++.....-...|++..| ..+.+++..|.-- ...|...+.....+...
T Consensus 20 l~~~~eel~~~L~P~~~~l~~~l~~~le~lr~~L~Py~~el~~~~~~~~eelr~kL~p~---~~el~~~l~~~~eeLr~~ 96 (273)
T 3s84_A 20 IGKELEELRARLLPHANEVSQKIGDNLRELQQRLEPYADQLRTQVNTQAEQLRRQLTPY---AQRMERVLRENADSLQAS 96 (273)
T ss_dssp HHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHhhHHHHHHH
Q ss_pred ---HHHHHH-HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhH-HHHHHHHHh
Q 002276 284 ---WFSSLR-DLTRRLKIMKMEHINLFEEAL-AYKKCAAEISEASSTIQSKIN-HQVQLYEHLKIKFIEG-TKERKELYN 356 (943)
Q Consensus 284 ---l~~~L~-~L~~~l~~~k~e~~~l~~e~~-~~~~~~~~i~~~~~~lq~~i~-~~~~~~e~l~~kl~~e-~~~RrkLhN 356 (943)
....++ .+...++.++.......+++. .+...+.++.+...-.-..+. .+....+.|...+... ...+.+|..
T Consensus 97 L~p~~eelr~kl~~~veelk~~L~Py~eelr~k~~~~leeLr~~l~P~ae~~~~kl~~~~e~L~~ql~~~a~~L~~~l~~ 176 (273)
T 3s84_A 97 LRPHADELKAKIDQNVEELKGRLTPYADEFKVKIDQTVEELRRSLAPYAQDTQEKLNHQLEGLTFQMKKNAEELKARISA 176 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhHhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhcCCE
Q 002276 357 KVLELKGNI 365 (943)
Q Consensus 357 ~lqELKGNI 365 (943)
.+.+||+.+
T Consensus 177 ~~eeLr~~L 185 (273)
T 3s84_A 177 SAEELRQRL 185 (273)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
No 152
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=56.35 E-value=1.8e+02 Score=29.62 Aligned_cols=50 Identities=14% Similarity=0.264 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH-------H-------HHHHHHHHHHHHHHHHHHHHH
Q 002276 209 GDYERLKMSYECQKKELTEAKRTLEELK-------R-------ENQLKNKEYQETWKSLQELQN 258 (943)
Q Consensus 209 ~e~~kL~~~~e~qk~eL~~~e~~i~eLe-------~-------en~~K~~E~~e~~~~l~~~q~ 258 (943)
...+.+.++.+.+..++...+..+..+. . .+..|+.++...|..|..+-.
T Consensus 48 ~~v~~llkkh~~~~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~I~~r~~~l~~~W~~L~~~~~ 111 (250)
T 1quu_A 48 TEVRALLRKHEAFESDLAAHQDRVEQIAAIAQELNELDYHDAVNVNDRCQKICDQWDRLGTLTQ 111 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666555544433 2 235678888888888876433
No 153
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=55.45 E-value=1.4e+02 Score=28.18 Aligned_cols=61 Identities=20% Similarity=0.387 Sum_probs=42.4
Q ss_pred ChHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 002276 656 DTSELLRYKQMVEKTKQELKSRDVQSKRMEDTIHGLDLKLKDKDLKIKSLQDKVKELETQLLVE 719 (943)
Q Consensus 656 ~~~el~rlk~~ie~LK~eL~~~~~q~~~lE~~i~~l~~kl~e~d~~i~~LqekikeLE~qL~~e 719 (943)
...++.+++..+..|..++.....+...++..+...+.. ....+..++..+..||.+|...
T Consensus 34 ~k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~---~~~~l~~~q~~i~~lE~eL~~~ 94 (129)
T 3tnu_B 34 TKHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQR---GELALKDARNKLAELEEALQKA 94 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhHHHH
Confidence 345677788888888888888777777777777655542 2345566777777777777544
No 154
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=55.06 E-value=4.2 Score=43.65 Aligned_cols=28 Identities=29% Similarity=0.242 Sum_probs=21.9
Q ss_pred hhHHHhhCCcceEEEeeCcccCcccccc
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
..+..++.|.+..++..++||||||.+.
T Consensus 54 ~~i~~~~~~~~~~~lv~apTGsGKT~~~ 81 (412)
T 3fht_A 54 NALPLMLAEPPQNLIAQSQSGTGKTAAF 81 (412)
T ss_dssp HHHHHHHSSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHHhcCCCCeEEEECCCCchHHHHH
Confidence 4567778885556788899999999874
No 155
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=54.87 E-value=3.9 Score=42.94 Aligned_cols=44 Identities=18% Similarity=0.243 Sum_probs=26.9
Q ss_pred ecceeeCCCCCcccccccchhhHHHhh--CCcceEEEeeCcccCcccccc
Q 002276 410 KFDAVFGPQADQVDVFQDTAPFANSVL--DGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 410 ~FD~VF~~~asQeeVFeev~pLV~svL--dGyNvcIFAYGQTGSGKTyTM 457 (943)
+|+.+++. ..+...+...+..+. .+....|+-||.+|+|||+..
T Consensus 10 ~~~~~ig~----~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 10 TLDEYIGQ----ERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp STTTCCSC----HHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHH
T ss_pred cHHHhhCH----HHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHH
Confidence 56655543 334444444444333 234467888999999999876
No 156
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=54.77 E-value=2 Score=46.40 Aligned_cols=49 Identities=22% Similarity=0.413 Sum_probs=27.8
Q ss_pred eecceeeCCCCCcccccccch-hhH-HHhhCCc---ceEEEeeCcccCcccccc
Q 002276 409 FKFDAVFGPQADQVDVFQDTA-PFA-NSVLDGY---NVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 409 F~FD~VF~~~asQeeVFeev~-pLV-~svLdGy---NvcIFAYGQTGSGKTyTM 457 (943)
.+||.|.+.+..-+.+.+.+. |+- ..++.|. ...|+-||++|+|||+..
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 467777764433222322222 222 1233342 246888999999999886
No 157
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=54.73 E-value=3.9 Score=43.44 Aligned_cols=28 Identities=29% Similarity=0.258 Sum_probs=21.0
Q ss_pred hhHHHhhCCcceEEEeeCcccCcccccc
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
..+..++.|-...++..++||||||.+.
T Consensus 34 ~~i~~~~~~~~~~~lv~a~TGsGKT~~~ 61 (395)
T 3pey_A 34 RALPLLLHNPPRNMIAQSQSGTGKTAAF 61 (395)
T ss_dssp HHHHHHHCSSCCCEEEECCTTSCHHHHH
T ss_pred HHHHHHHcCCCCeEEEECCCCCcHHHHH
Confidence 4567778884445678899999999864
No 158
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=54.73 E-value=4 Score=42.57 Aligned_cols=17 Identities=35% Similarity=0.382 Sum_probs=15.3
Q ss_pred eEEEeeCcccCcccccc
Q 002276 441 VCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 441 vcIFAYGQTGSGKTyTM 457 (943)
..|+-||++|+|||++.
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 57899999999999886
No 159
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=54.56 E-value=1.3e+02 Score=27.68 Aligned_cols=11 Identities=27% Similarity=0.268 Sum_probs=4.8
Q ss_pred HHHHHHhHHHh
Q 002276 350 ERKELYNKVLE 360 (943)
Q Consensus 350 ~RrkLhN~lqE 360 (943)
..++|..+|.|
T Consensus 84 kn~~L~~qL~d 94 (97)
T 2eqb_B 84 LNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 33444444443
No 160
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=54.25 E-value=5 Score=42.24 Aligned_cols=19 Identities=37% Similarity=0.461 Sum_probs=15.7
Q ss_pred cceEEEeeCcccCcccccc
Q 002276 439 YNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 439 yNvcIFAYGQTGSGKTyTM 457 (943)
-...|.-.|+||||||.+|
T Consensus 24 ~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp SSEEEEEECSTTCSHHHHH
T ss_pred CCCEEEEECCCCccHHHHH
Confidence 3456777899999999997
No 161
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=54.25 E-value=1.7e+02 Score=28.92 Aligned_cols=20 Identities=15% Similarity=0.333 Sum_probs=11.3
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 002276 281 KSRWFSSLRDLTRRLKIMKM 300 (943)
Q Consensus 281 k~kl~~~L~~L~~~l~~~k~ 300 (943)
...+...|+.|+.+++....
T Consensus 72 Ed~yEeqIk~L~~kLKEAE~ 91 (155)
T 2efr_A 72 EDKYEEEIKVLSDKLKEAET 91 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666655543
No 162
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=52.87 E-value=4 Score=43.90 Aligned_cols=26 Identities=31% Similarity=0.447 Sum_probs=20.1
Q ss_pred hhHHHhhCCcceEEEeeCcccCcccccc
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
..+..++.|.+ ++..++||||||.+.
T Consensus 50 ~~i~~i~~~~~--~li~a~TGsGKT~~~ 75 (400)
T 1s2m_A 50 EAIPVAITGRD--ILARAKNGTGKTAAF 75 (400)
T ss_dssp HHHHHHHHTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHhcCCC--EEEECCCCcHHHHHH
Confidence 45667778877 567789999999764
No 163
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=52.72 E-value=4.9 Score=41.72 Aligned_cols=27 Identities=30% Similarity=0.405 Sum_probs=20.0
Q ss_pred hhHHHhhCCcceEEEeeCcccCccccccc
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTFTME 458 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTyTM~ 458 (943)
..+..+++|.+ ++..++||||||.+..
T Consensus 23 ~~i~~i~~~~~--~lv~~~TGsGKT~~~~ 49 (337)
T 2z0m_A 23 KTIPLMLQGKN--VVVRAKTGSGKTAAYA 49 (337)
T ss_dssp HHHHHHHTTCC--EEEECCTTSSHHHHHH
T ss_pred HHHHHHhcCCC--EEEEcCCCCcHHHHHH
Confidence 34566778876 4566899999998753
No 164
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=52.33 E-value=5 Score=43.35 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=19.6
Q ss_pred hHHHhhCCcceEEEeeCcccCcccccc
Q 002276 431 FANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 431 LV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
.+..+++|.|+ +..++||||||.++
T Consensus 45 ~i~~i~~~~~~--lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 45 AIPIIKEKRDL--MACAQTGSGKTAAF 69 (417)
T ss_dssp HHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHccCCCE--EEEcCCCCHHHHHH
Confidence 45667888875 56789999999864
No 165
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=52.33 E-value=4.4 Score=39.29 Aligned_cols=17 Identities=29% Similarity=0.331 Sum_probs=15.1
Q ss_pred eEEEeeCcccCcccccc
Q 002276 441 VCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 441 vcIFAYGQTGSGKTyTM 457 (943)
..++-||.+|+|||+.+
T Consensus 46 ~~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIA 62 (250)
T ss_dssp SEEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 47889999999999876
No 166
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=52.09 E-value=4.4 Score=44.23 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=20.2
Q ss_pred hhHHHhhCCcceEEEeeCcccCcccccc
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
..+..+++|.| ++..++||||||...
T Consensus 28 ~~i~~i~~~~~--~lv~apTGsGKT~~~ 53 (414)
T 3oiy_A 28 LWAKRIVQGKS--FTMVAPTGVGKTTFG 53 (414)
T ss_dssp HHHHHHTTTCC--EECCSCSSSSHHHHH
T ss_pred HHHHHHhcCCC--EEEEeCCCCCHHHHH
Confidence 35667788876 578899999999853
No 167
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=51.48 E-value=4.5 Score=42.08 Aligned_cols=27 Identities=30% Similarity=0.487 Sum_probs=20.3
Q ss_pred hHHHhhCC--cceEEEeeCcccCcccccc
Q 002276 431 FANSVLDG--YNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 431 LV~svLdG--yNvcIFAYGQTGSGKTyTM 457 (943)
.+..++.| ..-||+-||+.|||||+..
T Consensus 47 ~l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 47 ALKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp HHHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred HHHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 34555566 2357999999999999885
No 168
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=50.74 E-value=2.7 Score=46.15 Aligned_cols=18 Identities=28% Similarity=0.554 Sum_probs=15.7
Q ss_pred ceEEEeeCcccCcccccc
Q 002276 440 NVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 440 NvcIFAYGQTGSGKTyTM 457 (943)
...|+-||.+|+|||+..
T Consensus 148 ~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 357899999999999876
No 169
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=50.53 E-value=4.3 Score=38.17 Aligned_cols=20 Identities=25% Similarity=0.612 Sum_probs=16.4
Q ss_pred CcceEEEeeCcccCcccccc
Q 002276 438 GYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 438 GyNvcIFAYGQTGSGKTyTM 457 (943)
..+..|+-||.+|||||+..
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 44556889999999999875
No 170
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=50.33 E-value=5.1 Score=41.16 Aligned_cols=27 Identities=22% Similarity=0.023 Sum_probs=20.3
Q ss_pred hhHHHhhCCcceEEEeeCcccCccccccc
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTFTME 458 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTyTM~ 458 (943)
..+..++++.+ ++.+|+||+|||++..
T Consensus 100 ~ai~~~~~~~~--~ll~~~tG~GKT~~a~ 126 (237)
T 2fz4_A 100 KALERWLVDKR--GCIVLPTGSGKTHVAM 126 (237)
T ss_dssp HHHHHHTTTSE--EEEEESSSTTHHHHHH
T ss_pred HHHHHHHhCCC--EEEEeCCCCCHHHHHH
Confidence 35566777766 5667899999999864
No 171
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=50.04 E-value=5.8 Score=41.25 Aligned_cols=21 Identities=29% Similarity=0.363 Sum_probs=16.5
Q ss_pred CCcceEEEeeCcccCcccccc
Q 002276 437 DGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 437 dGyNvcIFAYGQTGSGKTyTM 457 (943)
.|....++-||+.|+|||++.
T Consensus 43 ~~~~~~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 43 TGSMPHLLFAGPPGVGKTTAA 63 (327)
T ss_dssp HTCCCEEEEESCTTSSHHHHH
T ss_pred cCCCCeEEEECcCCCCHHHHH
Confidence 354334888999999999986
No 172
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=50.02 E-value=4.1 Score=42.21 Aligned_cols=18 Identities=39% Similarity=0.423 Sum_probs=15.4
Q ss_pred ceEEEeeCcccCcccccc
Q 002276 440 NVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 440 NvcIFAYGQTGSGKTyTM 457 (943)
...|+-||++|+|||++.
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 346888999999999986
No 173
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=49.61 E-value=5.8 Score=43.87 Aligned_cols=27 Identities=26% Similarity=0.247 Sum_probs=19.4
Q ss_pred hHHHhhCCcceEEEeeCcccCcccccc
Q 002276 431 FANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 431 LV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
.+..+.-.....|.-.|+||||||.+|
T Consensus 127 ~l~~l~~~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 127 KVLELCHRKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SHHHHTTSSSEEEEEECSSSSSHHHHH
T ss_pred HHHHHhhcCCCEEEEECCCCCCHHHHH
Confidence 344443334556788899999999997
No 174
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=48.30 E-value=1.6e+02 Score=26.76 Aligned_cols=39 Identities=15% Similarity=0.216 Sum_probs=26.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 208 KGDYERLKMSYECQKKELTEAKRTLEELKRENQLKNKEY 246 (943)
Q Consensus 208 ~~e~~kL~~~~e~qk~eL~~~e~~i~eLe~en~~K~~E~ 246 (943)
-++...+..++..++.+-..+-..|.+++++...-..++
T Consensus 3 ~~~~~~l~~eL~~l~~eE~~L~~eL~~lEke~~~l~~el 41 (96)
T 3q8t_A 3 GSDSEQLQRELKELALEEERLIQELEDVEKNRKVVAENL 41 (96)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 356677777777777777777777777777665444443
No 175
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=48.13 E-value=4.4 Score=42.16 Aligned_cols=27 Identities=11% Similarity=-0.006 Sum_probs=19.4
Q ss_pred hhHHHhhCCcceEEEeeCcccCccccccc
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTFTME 458 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTyTM~ 458 (943)
..+..++.|.++.| .++||||||.+..
T Consensus 120 ~ai~~~l~~~~~ll--~~~tGsGKT~~~~ 146 (282)
T 1rif_A 120 DAVFEGLVNRRRIL--NLPTSAGRSLIQA 146 (282)
T ss_dssp HHHHHHHHHSEEEE--CCCTTSCHHHHHH
T ss_pred HHHHHHHhcCCeEE--EcCCCCCcHHHHH
Confidence 34566666755533 8999999999863
No 176
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=47.92 E-value=62 Score=32.64 Aligned_cols=66 Identities=14% Similarity=0.100 Sum_probs=33.4
Q ss_pred CChHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 655 LDTSELLRYKQMVEKTKQELKSRDVQSKRMEDTIHGLDLKLKDKDLKIKSLQDKVKELETQLLVER 720 (943)
Q Consensus 655 ~~~~el~rlk~~ie~LK~eL~~~~~q~~~lE~~i~~l~~kl~e~d~~i~~LqekikeLE~qL~~er 720 (943)
++.....++++..++.+.+...+..++.....+++.+-..-+-....|..+.+++.+|..++..++
T Consensus 68 LT~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R 133 (175)
T 3lay_A 68 LTTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQR 133 (175)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555554444444444444444433322111124567777788888877776554
No 177
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=47.89 E-value=6.1 Score=41.75 Aligned_cols=18 Identities=33% Similarity=0.307 Sum_probs=15.3
Q ss_pred ceEEEeeCcccCcccccc
Q 002276 440 NVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 440 NvcIFAYGQTGSGKTyTM 457 (943)
...++-||++|+|||+++
T Consensus 48 ~~~~L~~G~~G~GKT~la 65 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVA 65 (324)
T ss_dssp CSEEEECSSTTSSHHHHH
T ss_pred CeEEEeeCcCCCCHHHHH
Confidence 356788999999999987
No 178
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=47.64 E-value=1.9e+02 Score=32.19 Aligned_cols=22 Identities=14% Similarity=0.055 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002276 290 DLTRRLKIMKMEHINLFEEALA 311 (943)
Q Consensus 290 ~L~~~l~~~k~e~~~l~~e~~~ 311 (943)
.|+++|...+.....+..++..
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~ 422 (471)
T 3mq9_A 401 LLQQELTEAQKGFQDVEAQAAT 422 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhh
Confidence 4555555555554444444443
No 179
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=47.53 E-value=5.9 Score=45.73 Aligned_cols=24 Identities=42% Similarity=0.473 Sum_probs=17.1
Q ss_pred HhhCCcceEEEeeCcccCccccccc
Q 002276 434 SVLDGYNVCIFAYGQTGTGKTFTME 458 (943)
Q Consensus 434 svLdGyNvcIFAYGQTGSGKTyTM~ 458 (943)
.+..|.+.++++ ++||||||.++.
T Consensus 193 ~~~~~~~~~ll~-~~TGsGKT~~~~ 216 (590)
T 3h1t_A 193 SVLQGKKRSLIT-MATGTGKTVVAF 216 (590)
T ss_dssp HHHTTCSEEEEE-ECTTSCHHHHHH
T ss_pred HHhcCCCceEEE-ecCCCChHHHHH
Confidence 333476655555 899999999974
No 180
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=47.45 E-value=3.6e+02 Score=30.61 Aligned_cols=34 Identities=15% Similarity=0.187 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 213 RLKMSYECQKKELTEAKRTLEELKRENQLKNKEY 246 (943)
Q Consensus 213 kL~~~~e~qk~eL~~~e~~i~eLe~en~~K~~E~ 246 (943)
.+...+....+++....+++...+..-+.+++|+
T Consensus 133 ~~~~~~~k~qk~l~~~~~~l~KaKk~Y~~~cke~ 166 (486)
T 3haj_A 133 EAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEE 166 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344444444444444444444444443
No 181
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=46.91 E-value=6.4 Score=43.80 Aligned_cols=26 Identities=31% Similarity=0.414 Sum_probs=20.0
Q ss_pred hhHHHhhCCcceEEEeeCcccCcccccc
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
..+..++.|.| +++.++||||||.+.
T Consensus 85 ~ai~~i~~g~d--~i~~a~TGsGKT~a~ 110 (434)
T 2db3_A 85 CSIPVISSGRD--LMACAQTGSGKTAAF 110 (434)
T ss_dssp HHHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred HHHHHHhcCCC--EEEECCCCCCchHHH
Confidence 35566788877 567789999999864
No 182
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=46.91 E-value=7 Score=44.58 Aligned_cols=27 Identities=26% Similarity=0.256 Sum_probs=20.7
Q ss_pred hHHHhhCCcceEEEeeCcccCcccccc
Q 002276 431 FANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 431 LV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
.+..++.|.+-.++..++||||||++.
T Consensus 149 ai~~i~~~~~~~~ll~apTGsGKT~~~ 175 (508)
T 3fho_A 149 ALPLLLSNPPRNMIGQSQSGTGKTAAF 175 (508)
T ss_dssp SHHHHHCSSCCCEEEECCSSTTSHHHH
T ss_pred HHHHHHcCCCCCEEEECCCCccHHHHH
Confidence 456777874455678899999999973
No 183
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=46.80 E-value=6.9 Score=41.74 Aligned_cols=26 Identities=19% Similarity=0.382 Sum_probs=20.1
Q ss_pred hhHHHhhCCcceEEEeeCcccCcccccc
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
..+..++.|.| ++..++||||||.+.
T Consensus 37 ~~i~~~~~~~~--~lv~a~TGsGKT~~~ 62 (391)
T 1xti_A 37 ECIPQAILGMD--VLCQAKSGMGKTAVF 62 (391)
T ss_dssp HHHHHHTTTCC--EEEECSSCSSHHHHH
T ss_pred HHHHHHhcCCc--EEEECCCCCcHHHHH
Confidence 45677788877 456679999999875
No 184
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=45.97 E-value=8.6 Score=40.60 Aligned_cols=27 Identities=30% Similarity=0.460 Sum_probs=19.1
Q ss_pred hHHHhhCCcceEEEeeCcccCcccccc
Q 002276 431 FANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 431 LV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
+...+..|.-..++-||++|+|||+++
T Consensus 49 l~~~l~~~~~~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 49 LKKTLKSANLPHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp HHHHTTCTTCCCEEEECSTTSSHHHHH
T ss_pred HHHHHhcCCCCEEEEECCCCCCHHHHH
Confidence 344444553334888999999999986
No 185
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=45.90 E-value=4.4e+02 Score=31.14 Aligned_cols=16 Identities=25% Similarity=0.453 Sum_probs=12.0
Q ss_pred HHHHHHHhHHHhhcCC
Q 002276 349 KERKELYNKVLELKGN 364 (943)
Q Consensus 349 ~~RrkLhN~lqELKGN 364 (943)
.+-+.|+++|++|+.+
T Consensus 567 ~~~~~~~~ei~~l~~~ 582 (592)
T 1f5n_A 567 KESRIMKNEIQDLQTK 582 (592)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 4556788888888865
No 186
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=45.05 E-value=5 Score=42.75 Aligned_cols=26 Identities=35% Similarity=0.516 Sum_probs=19.9
Q ss_pred hhHHHhhCCcceEEEeeCcccCcccccc
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
..+..++.|.+ ++..++||||||.++
T Consensus 50 ~~i~~i~~~~~--~lv~~~TGsGKT~~~ 75 (394)
T 1fuu_A 50 RAIMPIIEGHD--VLAQAQSGTGKTGTF 75 (394)
T ss_dssp HHHHHHHHTCC--EEECCCSSHHHHHHH
T ss_pred HHHHHHhCCCC--EEEECCCCChHHHHH
Confidence 35666778877 456789999999874
No 187
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=45.02 E-value=6.7 Score=45.49 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=16.7
Q ss_pred hhCCcceEEEeeCcccCcccccc
Q 002276 435 VLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 435 vLdGyNvcIFAYGQTGSGKTyTM 457 (943)
+-.|.+ |.-.|+||||||.||
T Consensus 257 v~~g~~--i~I~GptGSGKTTlL 277 (511)
T 2oap_1 257 IEHKFS--AIVVGETASGKTTTL 277 (511)
T ss_dssp HHTTCC--EEEEESTTSSHHHHH
T ss_pred HhCCCE--EEEECCCCCCHHHHH
Confidence 346776 566899999999987
No 188
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=44.96 E-value=1e+02 Score=27.62 Aligned_cols=27 Identities=0% Similarity=0.020 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 211 YERLKMSYECQKKELTEAKRTLEELKR 237 (943)
Q Consensus 211 ~~kL~~~~e~qk~eL~~~e~~i~eLe~ 237 (943)
.+.+...|..++.++..+..++..+++
T Consensus 3 ~Q~~i~~f~~lq~~~~~l~~q~~~l~~ 29 (107)
T 1fxk_A 3 VQHQLAQFQQLQQQAQAISVQKQTVEM 29 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666665555555544
No 189
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=44.63 E-value=3.4e+02 Score=31.50 Aligned_cols=34 Identities=12% Similarity=0.116 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 221 QKKELTEAKRTLEELKRENQLKNKEYQETWKSLQ 254 (943)
Q Consensus 221 qk~eL~~~e~~i~eLe~en~~K~~E~~e~~~~l~ 254 (943)
-++||+..++.=..++...+.+.+|.+..-..++
T Consensus 14 yq~elarvqkana~aka~Ye~~~ae~~a~n~~i~ 47 (497)
T 3iox_A 14 YQTELARVQKANADAKAAYEAAVAANNAANAALT 47 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 3444444444444444444444444444433333
No 190
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=44.52 E-value=2.3e+02 Score=27.49 Aligned_cols=18 Identities=33% Similarity=0.355 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002276 211 YERLKMSYECQKKELTEA 228 (943)
Q Consensus 211 ~~kL~~~~e~qk~eL~~~ 228 (943)
+..|....+++..++++-
T Consensus 13 ia~L~~D~~s~~~eleEn 30 (167)
T 4gkw_A 13 VADLKQDTESLQKQLEEN 30 (167)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334445555555554443
No 191
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=44.46 E-value=6 Score=42.27 Aligned_cols=17 Identities=41% Similarity=0.776 Sum_probs=15.1
Q ss_pred eEEEeeCcccCcccccc
Q 002276 441 VCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 441 vcIFAYGQTGSGKTyTM 457 (943)
..|+-||++|+|||+..
T Consensus 52 ~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CEEEEECSSSSCHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 46899999999999985
No 192
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=44.37 E-value=9.1 Score=43.62 Aligned_cols=27 Identities=33% Similarity=0.471 Sum_probs=21.0
Q ss_pred hhHHHhhCCcceEEEeeCcccCccccc
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTFT 456 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTyT 456 (943)
..+..++.|-+-.+++.++||||||.+
T Consensus 101 ~~i~~~l~~~~~~~lv~apTGsGKTl~ 127 (563)
T 3i5x_A 101 KTIKPILSSEDHDVIARAKTGTGKTFA 127 (563)
T ss_dssp HHHHHHHSSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHHhcCCCCeEEEECCCCCCccHH
Confidence 456677765555678889999999987
No 193
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=44.30 E-value=2.9e+02 Score=28.60 Aligned_cols=26 Identities=8% Similarity=-0.196 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 284 WFSSLRDLTRRLKIMKMEHINLFEEA 309 (943)
Q Consensus 284 l~~~L~~L~~~l~~~k~e~~~l~~e~ 309 (943)
+...+.....++...+.++......+
T Consensus 170 ~~~k~~~~~~~~~~a~~~Y~~~v~~~ 195 (301)
T 2efk_A 170 AKQQAHLRSHMAEESKNEYAAQLQRF 195 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444333333
No 194
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=44.21 E-value=1.8e+02 Score=26.33 Aligned_cols=26 Identities=12% Similarity=0.102 Sum_probs=11.9
Q ss_pred hhHhhhhhHHHHHHHHHHHHHHHHHH
Q 002276 276 GQVKEKSRWFSSLRDLTRRLKIMKME 301 (943)
Q Consensus 276 ~~~~ek~kl~~~L~~L~~~l~~~k~e 301 (943)
...++...+...|..++.....+..+
T Consensus 29 ~lEke~~~l~~el~~le~E~~~L~~e 54 (96)
T 3q8t_A 29 DVEKNRKVVAENLEKVQAEAERLDQE 54 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHhhH
Confidence 33334444455555555554444433
No 195
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=43.95 E-value=8.4 Score=41.27 Aligned_cols=28 Identities=21% Similarity=0.169 Sum_probs=23.4
Q ss_pred hhHHHhhCCc---ceEEEeeCcccCcccccc
Q 002276 430 PFANSVLDGY---NVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 430 pLV~svLdGy---NvcIFAYGQTGSGKTyTM 457 (943)
..+..+++|. .-||+-||+.|+|||+..
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a 121 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIA 121 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHH
Confidence 4577888887 458999999999999875
No 196
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=43.57 E-value=7.3 Score=43.81 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=19.4
Q ss_pred HHHhhCCcceEEEeeCcccCcccccc
Q 002276 432 ANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 432 V~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
+..++.|.+. +++.|+||||||.+.
T Consensus 12 i~~~l~~~~~-~lv~a~TGsGKT~~~ 36 (451)
T 2jlq_A 12 DEDIFRKKRL-TIMDLHPGAGKTKRI 36 (451)
T ss_dssp CGGGGSTTCE-EEECCCTTSSCCTTH
T ss_pred HHHHHhcCCe-EEEECCCCCCHhhHH
Confidence 4567788765 567799999999973
No 197
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=43.55 E-value=1.3e+02 Score=28.09 Aligned_cols=44 Identities=25% Similarity=0.302 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 213 RLKMSYECQKKELTEAKRTLEELKRENQLKNKEYQETWKSLQEL 256 (943)
Q Consensus 213 kL~~~~e~qk~eL~~~e~~i~eLe~en~~K~~E~~e~~~~l~~~ 256 (943)
-|.=.++.|+..|++++..+.++.+++..|+++++...-....+
T Consensus 27 al~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L 70 (103)
T 4h22_A 27 NFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAHSIL 70 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445677788888888888888888888888876554444333
No 198
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=43.54 E-value=1.8e+02 Score=25.95 Aligned_cols=32 Identities=19% Similarity=0.323 Sum_probs=19.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 208 KGDYERLKMSYECQKKELTEAKRTLEELKREN 239 (943)
Q Consensus 208 ~~e~~kL~~~~e~qk~eL~~~e~~i~eLe~en 239 (943)
+++...+..++..+++.+...+....+|+..+
T Consensus 13 eeEm~~~eeel~~lke~l~k~e~~rkele~~~ 44 (89)
T 3bas_A 13 EEEMKEQLKQMDKMKEDLAKTERIKKELEEQN 44 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666655555555544
No 199
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=43.44 E-value=1.7e+02 Score=26.01 Aligned_cols=57 Identities=11% Similarity=0.080 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhccHHHHHHhhHhhhhhHHHHHHHHHHHHHHH
Q 002276 239 NQLKNKEYQETWKSLQELQNELMRKSMHVGSLAFAIEGQVKEKSRWFSSLRDLTRRLKIM 298 (943)
Q Consensus 239 n~~K~~E~~e~~~~l~~~q~el~~~~~~v~sL~~~ie~~~~ek~kl~~~L~~L~~~l~~~ 298 (943)
.+.+...++..+.++...+++|..=... |..-|.....+...+...|..|+.+.+++
T Consensus 16 l~E~~~q~qaEl~sLrrT~~EL~~G~~K---L~~mi~~l~~E~~~l~~ni~~lk~K~~EL 72 (78)
T 3iv1_A 16 MKEEMDRAQAELNALKRTEEDLKKGHQK---LEEMVTRLDQEVAEVDKNIELLKKKDEEL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555666666666543222 22223333333444444444444444433
No 200
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=43.26 E-value=8.6 Score=43.13 Aligned_cols=26 Identities=35% Similarity=0.604 Sum_probs=20.1
Q ss_pred hhHHHhhCCcceEEEeeCcccCcccccc
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
..+..++.|.| ++..++||||||.+.
T Consensus 14 ~~i~~~~~~~~--~l~~~~tGsGKT~~~ 39 (556)
T 4a2p_A 14 ELAQPAINGKN--ALICAPTGSGKTFVS 39 (556)
T ss_dssp HHHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHHcCCC--EEEEcCCCChHHHHH
Confidence 35667788877 466789999999874
No 201
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=43.25 E-value=7 Score=41.78 Aligned_cols=30 Identities=20% Similarity=0.249 Sum_probs=20.8
Q ss_pred cchhhHHHhhCCcceEEEeeCcccCcccccc
Q 002276 427 DTAPFANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 427 ev~pLV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
.+...+..+. ..+..|+-||.+|+|||+..
T Consensus 13 ~~~~~~~~~a-~~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 13 HLLNEIAMVA-PSDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp HHHHHHHHHC-STTSCEEEESCTTSCHHHHH
T ss_pred HHHHHHHHHh-CCCCcEEEECCCCchHHHHH
Confidence 3334444443 44667889999999999875
No 202
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=43.14 E-value=4.3e+02 Score=30.43 Aligned_cols=28 Identities=11% Similarity=0.140 Sum_probs=13.9
Q ss_pred cCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 205 RGVKGDYERLKMSYECQKKELTEAKRTLEEL 235 (943)
Q Consensus 205 ~~~~~e~~kL~~~~e~qk~eL~~~e~~i~eL 235 (943)
+++.+-..+.+ +..++.|.+|+..+.++
T Consensus 85 C~l~D~L~k~q---~~V~~~LqeLe~~l~~l 112 (464)
T 1m1j_B 85 CELQTTLLKQE---KTVKPVLRDLKDRVAKF 112 (464)
T ss_dssp THHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHhh---hhhHhHHHHHHHHHHHH
Confidence 55544333332 33445566666666555
No 203
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=43.10 E-value=1.8e+02 Score=25.90 Aligned_cols=25 Identities=16% Similarity=0.153 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 316 AAEISEASSTIQSKINHQVQLYEHL 340 (943)
Q Consensus 316 ~~~i~~~~~~lq~~i~~~~~~~e~l 340 (943)
++++.+....+...-.++...+.++
T Consensus 58 l~eaEe~~~~L~~~K~eLE~~l~el 82 (89)
T 3bas_A 58 MKQLEDKVEELLSKNYHLENEVARL 82 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444433333333333333333
No 204
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=43.08 E-value=4.2 Score=43.34 Aligned_cols=15 Identities=40% Similarity=0.755 Sum_probs=13.8
Q ss_pred EEeeCcccCcccccc
Q 002276 443 IFAYGQTGTGKTFTM 457 (943)
Q Consensus 443 IFAYGQTGSGKTyTM 457 (943)
++-||++|+|||+++
T Consensus 39 ~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRC 53 (354)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 778999999999987
No 205
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=42.99 E-value=3.9e+02 Score=29.75 Aligned_cols=37 Identities=19% Similarity=0.114 Sum_probs=23.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 279 KEKSRWFSSLRDLTRRLKIMKMEHINLFEEALAYKKC 315 (943)
Q Consensus 279 ~ek~kl~~~L~~L~~~l~~~k~e~~~l~~e~~~~~~~ 315 (943)
.+..++....+.|+..+++++.....|.+++..-...
T Consensus 198 ~e~~~~~~n~~~l~~~~~~~~~~~~~l~~~~~~~~~~ 234 (373)
T 3hhm_B 198 KEIQRIMHNYDKLKSRISEIIDSRRRLEEDLKKQAAE 234 (373)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777778888877776666666655543333
No 206
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=42.76 E-value=2.6e+02 Score=27.67 Aligned_cols=16 Identities=13% Similarity=0.165 Sum_probs=6.5
Q ss_pred hhHHHHHHHHHHHHHH
Q 002276 282 SRWFSSLRDLTRRLKI 297 (943)
Q Consensus 282 ~kl~~~L~~L~~~l~~ 297 (943)
..+...|.+|+..++.
T Consensus 78 ~~l~~ki~dLeeel~e 93 (152)
T 3a7p_A 78 KSKEQEIRRLKEVIAL 93 (152)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444443333
No 207
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=42.55 E-value=4.1 Score=42.30 Aligned_cols=21 Identities=33% Similarity=0.308 Sum_probs=16.4
Q ss_pred CCcceEEEeeCcccCcccccc
Q 002276 437 DGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 437 dGyNvcIFAYGQTGSGKTyTM 457 (943)
.|....++-||+.|+|||++.
T Consensus 35 ~~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 35 RKNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp TTCCCCEEEESSSSSSHHHHH
T ss_pred CCCCCeEEEECcCCcCHHHHH
Confidence 344334888999999999886
No 208
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=42.26 E-value=8.9 Score=40.82 Aligned_cols=18 Identities=28% Similarity=0.335 Sum_probs=15.5
Q ss_pred ceEEEeeCcccCcccccc
Q 002276 440 NVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 440 NvcIFAYGQTGSGKTyTM 457 (943)
...++-||+.|+|||+++
T Consensus 38 ~~~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIA 55 (373)
T ss_dssp CSEEEEESCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 346889999999999986
No 209
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=41.80 E-value=1.1e+02 Score=31.62 Aligned_cols=15 Identities=13% Similarity=0.111 Sum_probs=8.4
Q ss_pred ChHhh-HHHHHHHhHh
Q 002276 629 DLSET-LCSLNFASRV 643 (943)
Q Consensus 629 ~~~ET-LsTLrFAsRa 643 (943)
+-.++ ...+.|+--+
T Consensus 118 d~~e~i~elfd~~~~~ 133 (213)
T 1ik9_A 118 NPAEVIRELIAYALDT 133 (213)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHH
Confidence 33344 4667777655
No 210
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=41.65 E-value=25 Score=41.47 Aligned_cols=6 Identities=0% Similarity=-0.003 Sum_probs=3.1
Q ss_pred cccccC
Q 002276 154 SSLELL 159 (943)
Q Consensus 154 ~~~~~~ 159 (943)
..|.+.
T Consensus 253 k~F~I~ 258 (575)
T 2i1j_A 253 RKFIIK 258 (575)
T ss_dssp TEEEEE
T ss_pred CeEEEE
Confidence 455554
No 211
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=41.46 E-value=1.6e+02 Score=33.29 Aligned_cols=43 Identities=5% Similarity=0.095 Sum_probs=22.9
Q ss_pred cCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 205 RGVKGDYERLKMSYECQKKELTEAKRTLEELKRENQLKNKEYQ 247 (943)
Q Consensus 205 ~~~~~e~~kL~~~~e~qk~eL~~~e~~i~eLe~en~~K~~E~~ 247 (943)
++|+.=..+.+..+...-.+|+..-++++.+..+.+.....|+
T Consensus 23 C~i~d~L~k~e~~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq 65 (409)
T 1m1j_C 23 CGIADFFNKYRLTTDGELLEIEGLLQQATNSTGSIEYLIQHIK 65 (409)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666665555555555555555555554444333333
No 212
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=41.36 E-value=54 Score=36.93 Aligned_cols=40 Identities=28% Similarity=0.343 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 683 RMEDTIHGLDLKLKDKDLKIKSLQDKVKELETQLLVERKL 722 (943)
Q Consensus 683 ~lE~~i~~l~~kl~e~d~~i~~LqekikeLE~qL~~erkl 722 (943)
.+++++..++.+..+.+..|+.++.++++++.++..+..+
T Consensus 7 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 46 (403)
T 4etp_A 7 ALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETV 46 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555566666667777777666555443
No 213
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=41.14 E-value=1.8e+02 Score=25.34 Aligned_cols=20 Identities=5% Similarity=-0.059 Sum_probs=8.5
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 002276 282 SRWFSSLRDLTRRLKIMKME 301 (943)
Q Consensus 282 ~kl~~~L~~L~~~l~~~k~e 301 (943)
..+...+..++.+++.....
T Consensus 16 d~a~~~~~~~e~~l~~~e~~ 35 (81)
T 1ic2_A 16 ENALDRAEQAEADKKAAEER 35 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444433
No 214
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=40.89 E-value=8.2 Score=44.71 Aligned_cols=46 Identities=17% Similarity=0.284 Sum_probs=27.5
Q ss_pred eeecceeeCCCCCcccccccchhhHHH-----hhCCc----ceEEEeeCcccCcccccc
Q 002276 408 TFKFDAVFGPQADQVDVFQDTAPFANS-----VLDGY----NVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 408 tF~FD~VF~~~asQeeVFeev~pLV~s-----vLdGy----NvcIFAYGQTGSGKTyTM 457 (943)
.++||.|.+.+ ++-.++..++.. ++..+ ...|+-||++|+|||+.+
T Consensus 27 ~~~f~dv~G~~----~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 27 KVTFKDVAGAE----EAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp CCCTTSSCSCH----HHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCHHHcCCcH----HHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHH
Confidence 56777777643 333333333332 22222 224899999999999986
No 215
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=40.86 E-value=9.9 Score=42.46 Aligned_cols=26 Identities=35% Similarity=0.445 Sum_probs=19.8
Q ss_pred hhHHHhhCCcceEEEeeCcccCcccccc
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
..+..++.|.|+ +..++||||||.+.
T Consensus 11 ~~i~~~~~~~~~--l~~~~tGsGKT~~~ 36 (555)
T 3tbk_A 11 ELALPAKKGKNT--IICAPTGCGKTFVS 36 (555)
T ss_dssp HHHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHHhCCCCE--EEEeCCCChHHHHH
Confidence 345667788774 56689999999874
No 216
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=40.85 E-value=13 Score=43.71 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=21.5
Q ss_pred hhHHHhhCCcceEEEeeCcccCcccccc
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
..|..++.|.+ +++.++||||||.+.
T Consensus 51 ~~i~~il~g~d--~lv~~pTGsGKTl~~ 76 (591)
T 2v1x_A 51 ETINVTMAGKE--VFLVMPTGGGKSLCY 76 (591)
T ss_dssp HHHHHHHTTCC--EEEECCTTSCTTHHH
T ss_pred HHHHHHHcCCC--EEEEECCCChHHHHH
Confidence 56788889988 577889999999864
No 217
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=40.74 E-value=8.7 Score=40.28 Aligned_cols=26 Identities=31% Similarity=0.351 Sum_probs=18.7
Q ss_pred hHHHhhCCcceEEEeeCcccCcccccc
Q 002276 431 FANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 431 LV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
.+..++.|.. .++..++||||||.++
T Consensus 36 ~i~~~~~~~~-~~l~~~~TGsGKT~~~ 61 (367)
T 1hv8_A 36 VIPLFLNDEY-NIVAQARTGSGKTASF 61 (367)
T ss_dssp HHHHHHHTCS-EEEEECCSSSSHHHHH
T ss_pred HHHHHhCCCC-CEEEECCCCChHHHHH
Confidence 4556677732 3567799999999885
No 218
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=40.70 E-value=5.4 Score=48.74 Aligned_cols=43 Identities=28% Similarity=0.411 Sum_probs=27.8
Q ss_pred ecceeeCCCCCcccccccchhhHHHhhCCcceEEEeeCcccCcccccccc
Q 002276 410 KFDAVFGPQADQVDVFQDTAPFANSVLDGYNVCIFAYGQTGTGKTFTMEG 459 (943)
Q Consensus 410 ~FD~VF~~~asQeeVFeev~pLV~svLdGyNvcIFAYGQTGSGKTyTM~G 459 (943)
.||.|++.+ +++..+++.+..+....++-||.+|+|||+.+.+
T Consensus 168 ~ld~viGr~-------~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~ 210 (854)
T 1qvr_A 168 KLDPVIGRD-------EEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEG 210 (854)
T ss_dssp CSCCCCSCH-------HHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHH
T ss_pred CCcccCCcH-------HHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHH
Confidence 456655532 2233455555556555678899999999998743
No 219
>3vp9_A General transcriptional corepressor TUP1; four helix bundle; 1.80A {Saccharomyces cerevisiae} PDB: 3vp8_A
Probab=40.63 E-value=40 Score=30.84 Aligned_cols=31 Identities=13% Similarity=0.111 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHH
Q 002276 325 TIQSKINHQVQLYEHLKIKFIEG-TKERKELY 355 (943)
Q Consensus 325 ~lq~~i~~~~~~~e~l~~kl~~e-~~~RrkLh 355 (943)
.|+..+-+++..+..++..|.+| ..+|+.|+
T Consensus 54 ~Ir~tvyeLE~~h~kmKq~YEeEI~rLr~eLe 85 (92)
T 3vp9_A 54 QIRNTVYERELTHRKMKDAYEEEIKHLKLGLE 85 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777788888888766 33444444
No 220
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=40.05 E-value=1.6e+02 Score=26.09 Aligned_cols=28 Identities=29% Similarity=0.434 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 002276 686 DTIHGLDLKLKDKDLKIKSLQDKVKELE 713 (943)
Q Consensus 686 ~~i~~l~~kl~e~d~~i~~LqekikeLE 713 (943)
..+..++..-.+.+..|..|+++.++|+
T Consensus 46 ~mi~~l~~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 46 EMVTRLDQEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444444444443
No 221
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=39.85 E-value=10 Score=43.73 Aligned_cols=46 Identities=22% Similarity=0.309 Sum_probs=28.0
Q ss_pred eeecceeeCCCCCcccccccchhhHHHhh-----CC----cceEEEeeCcccCcccccc
Q 002276 408 TFKFDAVFGPQADQVDVFQDTAPFANSVL-----DG----YNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 408 tF~FD~VF~~~asQeeVFeev~pLV~svL-----dG----yNvcIFAYGQTGSGKTyTM 457 (943)
.++|+.|.+. +++.+++..++..+- .. ....|+-||++|+|||+.+
T Consensus 12 ~~~f~di~G~----~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 12 RVTFKDVGGA----EEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CCCGGGCCSC----HHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCHHHhCCc----HHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 4678877764 333444433443321 11 2245899999999999876
No 222
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=39.68 E-value=9.4 Score=44.72 Aligned_cols=26 Identities=38% Similarity=0.441 Sum_probs=21.0
Q ss_pred hhHHHhhCCcceEEEeeCcccCcccccc
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
..+..+++|.| ++..++||||||.+.
T Consensus 14 ~~i~~il~g~~--~ll~~~TGsGKTl~~ 39 (699)
T 4gl2_A 14 EVAQPALEGKN--IIICLPTGCGKTRVA 39 (699)
T ss_dssp HHHHHHHSSCC--EEECCCTTSCHHHHH
T ss_pred HHHHHHHhCCC--EEEEcCCCCcHHHHH
Confidence 45677888877 567799999999875
No 223
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=39.34 E-value=12 Score=39.82 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=20.3
Q ss_pred hhHHHhhCCc-----ceEEEeeCcccCcccccc
Q 002276 430 PFANSVLDGY-----NVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 430 pLV~svLdGy-----NvcIFAYGQTGSGKTyTM 457 (943)
.++..++.|+ -..|+-.|++|||||+..
T Consensus 18 ~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 18 DNLEELIQGKKAVESPTAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp HHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHH
T ss_pred HHHHHHhccccCCCCCeEEEEECCCCCCHHHHH
Confidence 4555555543 356888999999999874
No 224
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=39.32 E-value=7.5 Score=41.85 Aligned_cols=44 Identities=23% Similarity=0.253 Sum_probs=24.7
Q ss_pred ecceeeCCCCCcccccccchhhHHHhh-CC-cceEEEeeCcccCcccccc
Q 002276 410 KFDAVFGPQADQVDVFQDTAPFANSVL-DG-YNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 410 ~FD~VF~~~asQeeVFeev~pLV~svL-dG-yNvcIFAYGQTGSGKTyTM 457 (943)
+|+.+|+ |..+.+.+.-.|.... .| .--.++-||++|+|||+.+
T Consensus 23 ~l~~~~g----~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 23 SLDEFIG----QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp SGGGCCS----CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHH
T ss_pred cHHHccC----cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHH
Confidence 5666665 3344444433333221 11 1133666999999999986
No 225
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=39.25 E-value=6.5 Score=45.29 Aligned_cols=20 Identities=40% Similarity=0.536 Sum_probs=16.7
Q ss_pred CcceEEEeeCcccCcccccc
Q 002276 438 GYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 438 GyNvcIFAYGQTGSGKTyTM 457 (943)
.....|+-||.+|+|||+..
T Consensus 236 ~~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHH
T ss_pred CCCCcEEEECcCCCCHHHHH
Confidence 34567999999999999976
No 226
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=38.81 E-value=1.8e+02 Score=28.35 Aligned_cols=6 Identities=50% Similarity=0.645 Sum_probs=2.2
Q ss_pred hHHHhh
Q 002276 356 NKVLEL 361 (943)
Q Consensus 356 N~lqEL 361 (943)
.+|-.|
T Consensus 136 e~I~~L 141 (147)
T 2b9c_A 136 NEVARL 141 (147)
T ss_dssp HHHTTS
T ss_pred HHHHHH
Confidence 333333
No 227
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=38.60 E-value=8.1 Score=45.51 Aligned_cols=26 Identities=35% Similarity=0.302 Sum_probs=19.1
Q ss_pred hHHHhhCCcceEEEeeCcccCccccccc
Q 002276 431 FANSVLDGYNVCIFAYGQTGTGKTFTME 458 (943)
Q Consensus 431 LV~svLdGyNvcIFAYGQTGSGKTyTM~ 458 (943)
.+..++.| ..++..|++|||||+|+.
T Consensus 157 Ai~~~l~~--~~~vi~G~pGTGKTt~l~ 182 (608)
T 1w36_D 157 AAAVALTR--RISVISGGPGTGKTTTVA 182 (608)
T ss_dssp HHHHHHTB--SEEEEECCTTSTHHHHHH
T ss_pred HHHHHhcC--CCEEEEeCCCCCHHHHHH
Confidence 34445543 567889999999999873
No 228
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=38.32 E-value=12 Score=37.15 Aligned_cols=28 Identities=25% Similarity=0.278 Sum_probs=21.6
Q ss_pred hhHHHhhCC-c--ceEEEeeCcccCcccccc
Q 002276 430 PFANSVLDG-Y--NVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 430 pLV~svLdG-y--NvcIFAYGQTGSGKTyTM 457 (943)
+-++.++.| . ...+.-+|.+|||||..+
T Consensus 11 ~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~ 41 (243)
T 1n0w_A 11 KELDKLLQGGIETGSITEMFGEFRTGKTQIC 41 (243)
T ss_dssp HHHHHHTTTSEETTSEEEEECCTTSSHHHHH
T ss_pred hHHHHhhcCCCcCCeEEEEECCCCCcHHHHH
Confidence 667788854 2 346778899999999986
No 229
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=38.23 E-value=1.1e+02 Score=27.21 Aligned_cols=9 Identities=22% Similarity=0.575 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 002276 231 TLEELKREN 239 (943)
Q Consensus 231 ~i~eLe~en 239 (943)
++++++.+|
T Consensus 14 klq~~E~rN 22 (79)
T 3cvf_A 14 KVQDLETRN 22 (79)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 334443333
No 230
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=38.13 E-value=11 Score=45.31 Aligned_cols=37 Identities=24% Similarity=0.218 Sum_probs=25.5
Q ss_pred cccccccchhhHHHhhCCcc------eEEEeeCcccCcccccc
Q 002276 421 QVDVFQDTAPFANSVLDGYN------VCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 421 QeeVFeev~pLV~svLdGyN------vcIFAYGQTGSGKTyTM 457 (943)
|..+.+.+...+..+..|.. +.|+-||+||+|||++.
T Consensus 496 q~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 496 QDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELA 538 (758)
T ss_dssp CHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHH
T ss_pred hHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHH
Confidence 45555555555555555544 36899999999999985
No 231
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=38.12 E-value=1.5e+02 Score=27.50 Aligned_cols=35 Identities=11% Similarity=0.137 Sum_probs=28.2
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 207 VKGDYERLKMSYECQKKELTEAKRTLEELKRENQL 241 (943)
Q Consensus 207 ~~~e~~kL~~~~e~qk~eL~~~e~~i~eLe~en~~ 241 (943)
..+++.+|+.++++|..|-..+++.++.|+.+...
T Consensus 10 ~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 10 SREEADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35688888888888888888888888888777643
No 232
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=37.89 E-value=1.4e+02 Score=29.12 Aligned_cols=20 Identities=10% Similarity=0.172 Sum_probs=8.9
Q ss_pred cchhHHHHHHHHHHHHHHHH
Q 002276 207 VKGDYERLKMSYECQKKELT 226 (943)
Q Consensus 207 ~~~e~~kL~~~~e~qk~eL~ 226 (943)
++++.......+..++..+.
T Consensus 6 LEd~L~~~r~~l~~~~~~~~ 25 (135)
T 2e7s_A 6 LEEQLNKSLKTIASQKAAIE 25 (135)
T ss_dssp CCSTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444333
No 233
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=37.37 E-value=50 Score=27.14 Aligned_cols=31 Identities=16% Similarity=0.204 Sum_probs=19.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 208 KGDYERLKMSYECQKKELTEAKRTLEELKRE 238 (943)
Q Consensus 208 ~~e~~kL~~~~e~qk~eL~~~e~~i~eLe~e 238 (943)
..++++|+.+.+.++.+...++.++++|+++
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~ 48 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKAK 48 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666666666666666666666553
No 234
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=37.06 E-value=12 Score=41.69 Aligned_cols=26 Identities=23% Similarity=0.050 Sum_probs=20.2
Q ss_pred hhHHHhhCCcceEEEeeCcccCcccccc
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
..+..++.|.+ ++..+.||||||.+.
T Consensus 100 ~ai~~i~~~~~--~ll~~~TGsGKT~~~ 125 (472)
T 2fwr_A 100 KALERWLVDKR--GCIVLPTGSGKTHVA 125 (472)
T ss_dssp HHHHHHTTTTE--EEEECCTTSCHHHHH
T ss_pred HHHHHHHhcCC--EEEEeCCCCCHHHHH
Confidence 45667777765 566789999999985
No 235
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=36.66 E-value=8.3 Score=42.28 Aligned_cols=19 Identities=32% Similarity=0.473 Sum_probs=14.8
Q ss_pred CCcceEEEeeCcccCcccccc
Q 002276 437 DGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 437 dGyNvcIFAYGQTGSGKTyTM 457 (943)
.++| ++..|.||||||++|
T Consensus 34 ~~~~--~~i~G~~G~GKs~~~ 52 (392)
T 4ag6_A 34 TNSN--WTILAKPGAGKSFTA 52 (392)
T ss_dssp CCCC--EEEECCTTSSHHHHH
T ss_pred ccCc--eEEEcCCCCCHHHHH
Confidence 3445 456799999999987
No 236
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=36.43 E-value=2.8e+02 Score=26.13 Aligned_cols=30 Identities=10% Similarity=0.293 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 002276 659 ELLRYKQMVEKTKQELKSRDVQSKRMEDTI 688 (943)
Q Consensus 659 el~rlk~~ie~LK~eL~~~~~q~~~lE~~i 688 (943)
++..++..+......|..+..++..+..++
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei 54 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEEA 54 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444433
No 237
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=36.34 E-value=9.7 Score=36.84 Aligned_cols=17 Identities=24% Similarity=0.464 Sum_probs=14.0
Q ss_pred EEEeeCcccCccccccc
Q 002276 442 CIFAYGQTGTGKTFTME 458 (943)
Q Consensus 442 cIFAYGQTGSGKTyTM~ 458 (943)
++.-.|.+|||||+.+-
T Consensus 11 i~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45667999999999874
No 238
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=36.04 E-value=6.1e+02 Score=29.94 Aligned_cols=6 Identities=17% Similarity=0.490 Sum_probs=2.6
Q ss_pred cceeEE
Q 002276 113 QCSFEV 118 (943)
Q Consensus 113 ~~~~~~ 118 (943)
+++.++
T Consensus 184 D~~l~~ 189 (592)
T 1f5n_A 184 DFSLDL 189 (592)
T ss_dssp TCCCCC
T ss_pred cccchh
Confidence 444443
No 239
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=36.03 E-value=9.4 Score=41.47 Aligned_cols=18 Identities=39% Similarity=0.595 Sum_probs=15.2
Q ss_pred ceEEEeeCcccCcccccc
Q 002276 440 NVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 440 NvcIFAYGQTGSGKTyTM 457 (943)
...|+-||++|+|||++.
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 346888999999999885
No 240
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=35.86 E-value=2.1e+02 Score=25.04 Aligned_cols=25 Identities=24% Similarity=0.476 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHH
Q 002276 665 QMVEKTKQELKSRDVQSKRMEDTIH 689 (943)
Q Consensus 665 ~~ie~LK~eL~~~~~q~~~lE~~i~ 689 (943)
..+..|+.+|..++.++..+++.++
T Consensus 18 ~~l~~Lr~eL~~Ke~eI~~L~e~i~ 42 (75)
T 3a7o_A 18 NTLAILQKELKSKEQEIRRLKEVIA 42 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3778888888888888887776654
No 241
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=35.81 E-value=12 Score=44.28 Aligned_cols=27 Identities=30% Similarity=0.265 Sum_probs=18.7
Q ss_pred hHHHhhCCcceEEEeeCcccCccccccc
Q 002276 431 FANSVLDGYNVCIFAYGQTGTGKTFTME 458 (943)
Q Consensus 431 LV~svLdGyNvcIFAYGQTGSGKTyTM~ 458 (943)
-|..++..-.. .+-.|+.|||||+|+.
T Consensus 197 AV~~al~~~~~-~lI~GPPGTGKT~ti~ 223 (646)
T 4b3f_X 197 AVLFALSQKEL-AIIHGPPGTGKTTTVV 223 (646)
T ss_dssp HHHHHHHCSSE-EEEECCTTSCHHHHHH
T ss_pred HHHHHhcCCCc-eEEECCCCCCHHHHHH
Confidence 45666643333 3567999999999963
No 242
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=35.69 E-value=7.2 Score=41.37 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=17.0
Q ss_pred HHhhCCcceEEEeeCcccCcccccc
Q 002276 433 NSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 433 ~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
..+..|. .|+-||++|+|||+.+
T Consensus 41 ~~l~~~~--~vll~G~pGtGKT~la 63 (331)
T 2r44_A 41 IGICTGG--HILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHTC--CEEEESCCCHHHHHHH
T ss_pred HHHHcCC--eEEEECCCCCcHHHHH
Confidence 3334443 5777999999999986
No 243
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=35.50 E-value=9.4 Score=40.20 Aligned_cols=49 Identities=12% Similarity=0.199 Sum_probs=24.1
Q ss_pred eecceeeCCCCCcccccccch-hhH-HHhhCCcc----eEEEeeCcccCcccccc
Q 002276 409 FKFDAVFGPQADQVDVFQDTA-PFA-NSVLDGYN----VCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 409 F~FD~VF~~~asQeeVFeev~-pLV-~svLdGyN----vcIFAYGQTGSGKTyTM 457 (943)
.+||.|-+.+..-+.+.+.+. |+- ..++++++ ..|+-||+.|||||+.+
T Consensus 7 ~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp -----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHH
Confidence 456666554443333433332 322 12333222 12889999999999875
No 244
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=35.44 E-value=12 Score=40.39 Aligned_cols=26 Identities=19% Similarity=0.101 Sum_probs=19.4
Q ss_pred hhHHHhhCCcceEEEeeCcccCccccccc
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTFTME 458 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTyTM~ 458 (943)
..+..++.| .++..++||+|||.++.
T Consensus 16 ~~i~~~~~~---~~ll~~~tG~GKT~~~~ 41 (494)
T 1wp9_A 16 VIYAKCKET---NCLIVLPTGLGKTLIAM 41 (494)
T ss_dssp HHHHHGGGS---CEEEECCTTSCHHHHHH
T ss_pred HHHHHHhhC---CEEEEcCCCCCHHHHHH
Confidence 356677788 34556899999999864
No 245
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=35.41 E-value=5.8e+02 Score=29.55 Aligned_cols=48 Identities=13% Similarity=0.285 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 210 DYERLKMSYECQKKELTEAKRTLEELKRENQLKNKEYQETWKSLQELQ 257 (943)
Q Consensus 210 e~~kL~~~~e~qk~eL~~~e~~i~eLe~en~~K~~E~~e~~~~l~~~q 257 (943)
++++|.+-+..-+.+++..+..++.+...-.....|.+.++..+..++
T Consensus 350 e~~~lrQRlddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~ 397 (602)
T 1cii_A 350 EWDKLRQRLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALL 397 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777778888888888888888887777777777777776665544
No 246
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=35.41 E-value=15 Score=35.98 Aligned_cols=28 Identities=29% Similarity=0.360 Sum_probs=19.4
Q ss_pred hhHHHhhC-Cc--ceEEEeeCcccCcccccc
Q 002276 430 PFANSVLD-GY--NVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 430 pLV~svLd-Gy--NvcIFAYGQTGSGKTyTM 457 (943)
+-++.++. |. ...+.-+|.+|||||+.+
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~ 40 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFS 40 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHH
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHH
Confidence 45566665 33 234566899999999886
No 247
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=35.27 E-value=2.4e+02 Score=25.17 Aligned_cols=24 Identities=33% Similarity=0.286 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 216 MSYECQKKELTEAKRTLEELKREN 239 (943)
Q Consensus 216 ~~~e~qk~eL~~~e~~i~eLe~en 239 (943)
...|.+..|+..++-++.+++.|-
T Consensus 19 ~~~E~L~qEi~~Lr~kv~elEnEr 42 (81)
T 3qh9_A 19 RKAEELLQELRHLKIKVEELENER 42 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666665543
No 248
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=35.27 E-value=15 Score=42.32 Aligned_cols=28 Identities=32% Similarity=0.473 Sum_probs=20.7
Q ss_pred hhHHHhhCCcceEEEeeCcccCcccccc
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
..+..++.|-+--+++.++||||||.+.
T Consensus 50 ~~i~~il~~~~~dvlv~apTGsGKTl~~ 77 (579)
T 3sqw_A 50 KTIKPILSSEDHDVIARAKTGTGKTFAF 77 (579)
T ss_dssp HHHHHHHCSSSEEEEEECCTTSCHHHHH
T ss_pred HHHHHHHccCCCeEEEEcCCCcHHHHHH
Confidence 4667777554455678889999999863
No 249
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=35.23 E-value=13 Score=43.37 Aligned_cols=26 Identities=35% Similarity=0.507 Sum_probs=20.2
Q ss_pred hhHHHhhCCcceEEEeeCcccCcccccc
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
..+..++.|.|+ +..++||||||...
T Consensus 20 ~~i~~~l~g~~~--iv~~~TGsGKTl~~ 45 (696)
T 2ykg_A 20 ELALPAMKGKNT--IICAPTGCGKTFVS 45 (696)
T ss_dssp HHHHHHHTTCCE--EEECCTTSSHHHHH
T ss_pred HHHHHHHcCCCE--EEEcCCCchHHHHH
Confidence 456677888874 67789999999863
No 250
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=35.19 E-value=14 Score=44.29 Aligned_cols=37 Identities=22% Similarity=0.192 Sum_probs=24.3
Q ss_pred cccccccchhhHHHhhCCcc------eEEEeeCcccCcccccc
Q 002276 421 QVDVFQDTAPFANSVLDGYN------VCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 421 QeeVFeev~pLV~svLdGyN------vcIFAYGQTGSGKTyTM 457 (943)
|.++-+.+...+.....|.. +.|+-||++|+|||++.
T Consensus 463 ~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 463 QDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVT 505 (758)
T ss_dssp CHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHH
Confidence 34444444444444445543 57899999999999986
No 251
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=34.96 E-value=11 Score=34.86 Aligned_cols=16 Identities=31% Similarity=0.451 Sum_probs=13.6
Q ss_pred EEEeeCcccCcccccc
Q 002276 442 CIFAYGQTGTGKTFTM 457 (943)
Q Consensus 442 cIFAYGQTGSGKTyTM 457 (943)
.|+-.|..|||||+..
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778899999999864
No 252
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=34.92 E-value=13 Score=45.41 Aligned_cols=37 Identities=24% Similarity=0.253 Sum_probs=25.2
Q ss_pred cccccccchhhHHHhhCCcc------eEEEeeCcccCcccccc
Q 002276 421 QVDVFQDTAPFANSVLDGYN------VCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 421 QeeVFeev~pLV~svLdGyN------vcIFAYGQTGSGKTyTM 457 (943)
|..+...+...|..+..|.. ..|+-||++|+|||++.
T Consensus 563 ~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 563 QDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELA 605 (854)
T ss_dssp CHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHH
T ss_pred cHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHH
Confidence 44455555555555544422 68999999999999885
No 253
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=34.71 E-value=5.9e+02 Score=29.40 Aligned_cols=16 Identities=13% Similarity=0.225 Sum_probs=7.4
Q ss_pred ccCcchhHHHHHHHHH
Q 002276 204 ERGVKGDYERLKMSYE 219 (943)
Q Consensus 204 ~~~~~~e~~kL~~~~e 219 (943)
.+.+.+-+.+..+.+.
T Consensus 49 GCrLqglL~kqerdv~ 64 (491)
T 1m1j_A 49 GCRMQGIIDDTDQNYS 64 (491)
T ss_dssp STTHHHHHHHHHHHHH
T ss_pred ccchhhHHHHhhhhHH
Confidence 3455555544444433
No 254
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=34.49 E-value=11 Score=41.29 Aligned_cols=21 Identities=38% Similarity=0.461 Sum_probs=15.5
Q ss_pred hhCCcceEEEeeCcccCcccccc
Q 002276 435 VLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 435 vLdGyNvcIFAYGQTGSGKTyTM 457 (943)
+-.|-+++| .|+||||||+++
T Consensus 172 i~~G~~i~i--vG~sGsGKSTll 192 (361)
T 2gza_A 172 VQLERVIVV--AGETGSGKTTLM 192 (361)
T ss_dssp HHTTCCEEE--EESSSSCHHHHH
T ss_pred HhcCCEEEE--ECCCCCCHHHHH
Confidence 335665544 499999999987
No 255
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=34.34 E-value=8.3 Score=42.81 Aligned_cols=18 Identities=33% Similarity=0.560 Sum_probs=15.7
Q ss_pred ceEEEeeCcccCcccccc
Q 002276 440 NVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 440 NvcIFAYGQTGSGKTyTM 457 (943)
|.-++.+|.||||||.++
T Consensus 53 ~~h~~i~G~tGsGKs~~~ 70 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL 70 (437)
T ss_dssp GGCEEEEECTTSSHHHHH
T ss_pred cceEEEECCCCCCHHHHH
Confidence 566788999999999986
No 256
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=34.16 E-value=10 Score=41.39 Aligned_cols=17 Identities=41% Similarity=0.776 Sum_probs=14.6
Q ss_pred eEEEeeCcccCcccccc
Q 002276 441 VCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 441 vcIFAYGQTGSGKTyTM 457 (943)
..|+-||++|+|||+..
T Consensus 85 ~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCEEEECSTTSCHHHHH
T ss_pred ceEEEECCCCCcHHHHH
Confidence 35888999999999886
No 257
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=33.75 E-value=11 Score=36.55 Aligned_cols=16 Identities=25% Similarity=0.347 Sum_probs=12.8
Q ss_pred EEEeeCcccCcccccc
Q 002276 442 CIFAYGQTGTGKTFTM 457 (943)
Q Consensus 442 cIFAYGQTGSGKTyTM 457 (943)
.|.-.|++|||||+.+
T Consensus 9 ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLV 24 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 3445699999999886
No 258
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=33.70 E-value=16 Score=35.62 Aligned_cols=28 Identities=32% Similarity=0.457 Sum_probs=21.5
Q ss_pred hhHHHhhC-Ccc--eEEEeeCcccCcccccc
Q 002276 430 PFANSVLD-GYN--VCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 430 pLV~svLd-GyN--vcIFAYGQTGSGKTyTM 457 (943)
+-++.++. |+. ..+.-+|.+|||||..+
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~ 37 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLA 37 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHH
Confidence 55677775 443 46788999999999876
No 259
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=33.55 E-value=21 Score=41.23 Aligned_cols=75 Identities=23% Similarity=0.380 Sum_probs=45.8
Q ss_pred eecceeeCCCCCcccccccch-hhH-HHhhCCc----ceEEEeeCcccCccccccc--------------cC---CCCCC
Q 002276 409 FKFDAVFGPQADQVDVFQDTA-PFA-NSVLDGY----NVCIFAYGQTGTGKTFTME--------------GT---KEARG 465 (943)
Q Consensus 409 F~FD~VF~~~asQeeVFeev~-pLV-~svLdGy----NvcIFAYGQTGSGKTyTM~--------------G~---~e~~G 465 (943)
.+||.|-+-+.--+++.+.|. |+. ...+.++ --.|+-||+.|+|||++.- |+ ..-.|
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vG 285 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVG 285 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSS
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCC
Confidence 566766665443333433333 433 2233332 3468999999999997642 11 12457
Q ss_pred ccHHhHHHHHHHHHhhcc
Q 002276 466 VNFRTLEELFRIIKEREK 483 (943)
Q Consensus 466 IIPRal~~LF~~i~~~~~ 483 (943)
--.+.++.+|........
T Consensus 286 esek~ir~lF~~Ar~~aP 303 (467)
T 4b4t_H 286 EGARMVRELFEMARTKKA 303 (467)
T ss_dssp HHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 778899999988776543
No 260
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=33.53 E-value=6.4e+02 Score=29.44 Aligned_cols=29 Identities=17% Similarity=0.240 Sum_probs=15.6
Q ss_pred ccCCCCCCCCCCcccc-CCCCCccccccce
Q 002276 49 ADSVFHHDPDDGTSWQ-NDPISNELVDGKS 77 (943)
Q Consensus 49 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 77 (943)
+|.+.+.-|..+..+. +.++.+++.||+-
T Consensus 165 T~~P~S~Lp~a~~sV~v~vRV~Dvv~DGvQ 194 (551)
T 2b5u_A 165 TESPVSSLPLDKATVNVNVRVVDDVKDERQ 194 (551)
T ss_dssp BSSCGGGSCTTCSEEEESCEEEEEESSSCE
T ss_pred ccCchhhcccccceeeeeeEeeeeeccCcE
Confidence 3444455555555554 3555666666653
No 261
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=33.42 E-value=4.6e+02 Score=29.67 Aligned_cols=12 Identities=17% Similarity=0.083 Sum_probs=5.7
Q ss_pred cHHhHHHHHHHH
Q 002276 467 NFRTLEELFRII 478 (943)
Q Consensus 467 IPRal~~LF~~i 478 (943)
.-.-++.|+..-
T Consensus 226 fWLGle~ih~LT 237 (409)
T 1m1j_C 226 FWLGNEKIHLIT 237 (409)
T ss_dssp EECCHHHHHHHH
T ss_pred EEeeccceeecc
Confidence 333445555443
No 262
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=33.42 E-value=11 Score=40.78 Aligned_cols=17 Identities=41% Similarity=0.601 Sum_probs=14.6
Q ss_pred eEEEeeCcccCcccccc
Q 002276 441 VCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 441 vcIFAYGQTGSGKTyTM 457 (943)
..|+-||++|+|||+..
T Consensus 52 ~~vll~GppGtGKT~la 68 (363)
T 3hws_A 52 SNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45778999999999975
No 263
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=33.36 E-value=11 Score=39.60 Aligned_cols=20 Identities=30% Similarity=0.496 Sum_probs=17.1
Q ss_pred ceEEEeeCcccCcccccccc
Q 002276 440 NVCIFAYGQTGTGKTFTMEG 459 (943)
Q Consensus 440 NvcIFAYGQTGSGKTyTM~G 459 (943)
...||..|..|+||||+|..
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~ 25 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQ 25 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHHH
Confidence 35699999999999999853
No 264
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=33.31 E-value=2.5e+02 Score=24.58 Aligned_cols=35 Identities=17% Similarity=0.349 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHHHhhc
Q 002276 325 TIQSKINHQVQLYEHLKIKFIEGTKERKELYNKVLELK 362 (943)
Q Consensus 325 ~lq~~i~~~~~~~e~l~~kl~~e~~~RrkLhN~lqELK 362 (943)
.|+.++..+...++.|.... ...+++|...|.++.
T Consensus 82 ~i~~~l~~l~~rw~~L~~~~---~~R~~~Le~aL~~~Q 116 (119)
T 3uun_A 82 EVQEQMNLLNSRWECLRVAS---MEKQSNLHRVLMDLQ 116 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 45666666666666665544 356667777766553
No 265
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=33.20 E-value=14 Score=41.83 Aligned_cols=30 Identities=23% Similarity=0.236 Sum_probs=21.0
Q ss_pred hhHHHhhCCcceEEEeeCcccCcccccccc
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTFTMEG 459 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTyTM~G 459 (943)
.++..+..+....++-||.+|+|||+...+
T Consensus 191 ~l~~~l~r~~~~~~LL~G~pG~GKT~la~~ 220 (468)
T 3pxg_A 191 RVIEVLSRRTKNNPVLIGEPGVGKTAIAEG 220 (468)
T ss_dssp HHHHHHHCSSSCEEEEESCTTTTTHHHHHH
T ss_pred HHHHHHhccCCCCeEEECCCCCCHHHHHHH
Confidence 344444445555678899999999998743
No 266
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=33.20 E-value=70 Score=26.25 Aligned_cols=29 Identities=28% Similarity=0.268 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 216 MSYECQKKELTEAKRTLEELKRENQLKNK 244 (943)
Q Consensus 216 ~~~e~qk~eL~~~e~~i~eLe~en~~K~~ 244 (943)
..++.++.|+.+++.++++|..++..-+.
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888888888877777654333
No 267
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=33.17 E-value=12 Score=42.29 Aligned_cols=23 Identities=26% Similarity=0.609 Sum_probs=19.9
Q ss_pred hhCCcceEEEeeCcccCcccccc
Q 002276 435 VLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 435 vLdGyNvcIFAYGQTGSGKTyTM 457 (943)
+++|++..|.-.|.+|+|||..|
T Consensus 26 vl~~vsf~I~lvG~sGaGKSTLl 48 (418)
T 2qag_C 26 VKRGFEFTLMVVGESGLGKSTLI 48 (418)
T ss_dssp CC-CCCEEEEEECCTTSSHHHHH
T ss_pred EecCCCEEEEEECCCCCcHHHHH
Confidence 68899999999999999999865
No 268
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=33.04 E-value=7.1e+02 Score=29.87 Aligned_cols=148 Identities=10% Similarity=0.129 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccHHH--
Q 002276 209 GDYERLKMSYECQKKELTEAKRTLEELKR--------------ENQLKNKEYQETWKSLQELQNELMRKSMHVGSLAF-- 272 (943)
Q Consensus 209 ~e~~kL~~~~e~qk~eL~~~e~~i~eLe~--------------en~~K~~E~~e~~~~l~~~q~el~~~~~~v~sL~~-- 272 (943)
...+.+.++.+.+..++...+..+..+.. ++..+..++...|..|..+-.+-..+..+.-.+..
T Consensus 404 ~~v~~ll~kh~~f~~el~~~~~~v~~l~~~~~~L~~~~~~~~~~I~~~~~~l~~~W~~L~~~~~~R~~~L~~~l~~~q~~ 483 (863)
T 1sjj_A 404 SEIKALLKKHEAFESDLAAHQDRVEQIAAIAQELNELDYYDSPSVNARCQKICDQWDNLGALTQKRREALERTEKLLETI 483 (863)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -----HHHhhHhhhhhHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Q 002276 273 -----AIEGQVKEKSRWFSSLRDLTRR---------LKIMKMEHINLFEEALAYKKCAAEISEASSTIQSK--------- 329 (943)
Q Consensus 273 -----~ie~~~~ek~kl~~~L~~L~~~---------l~~~k~e~~~l~~e~~~~~~~~~~i~~~~~~lq~~--------- 329 (943)
+......+...|.......-.. ++.+-..|..+..++.+.+..+..+..+...+...
T Consensus 484 ~~l~~~f~~~a~~~~~Wl~~~e~~l~~~~~g~dl~~ve~ll~kh~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 563 (863)
T 1sjj_A 484 DQLYLEYAKRAAPFNNWMEGAMEDLQDTFIVHTIEEIQGLTTAHEQFKATLPDADKERQAILGIHNEVSKIVQTYHVNMA 563 (863)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHHHHHCCCCCSSSGGGHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHhhccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q ss_pred ---------HHHHHHHHHHHHHHHHhHHHHHHHHHhHHH
Q 002276 330 ---------INHQVQLYEHLKIKFIEGTKERKELYNKVL 359 (943)
Q Consensus 330 ---------i~~~~~~~e~l~~kl~~e~~~RrkLhN~lq 359 (943)
+..+...++.|..... ..|.+|...++
T Consensus 564 ~~~~~~~~~~~~L~~rw~~L~~~~~---~R~~~L~~~l~ 599 (863)
T 1sjj_A 564 GTNPYTTITPQEINGKWEHVRQLVP---RRDQALMEEHA 599 (863)
T ss_dssp SCCSSSSCCHHHHHHHHHHHHHHHH---HHHHHHGGGHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHHHH---HHHHHHHHHHH
No 269
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=33.01 E-value=23 Score=40.58 Aligned_cols=44 Identities=27% Similarity=0.454 Sum_probs=32.7
Q ss_pred ceEEEeeCcccCcccccc--------------ccC---CCCCCccHHhHHHHHHHHHhhcc
Q 002276 440 NVCIFAYGQTGTGKTFTM--------------EGT---KEARGVNFRTLEELFRIIKEREK 483 (943)
Q Consensus 440 NvcIFAYGQTGSGKTyTM--------------~G~---~e~~GIIPRal~~LF~~i~~~~~ 483 (943)
--.|+-||+.|+|||.+. .|+ ....|--.+.++.+|........
T Consensus 216 prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~~aP 276 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAP 276 (437)
T ss_dssp CSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHHHHHHHHTCS
T ss_pred CCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHHHHHHHhcCC
Confidence 356999999999999764 221 13467888999999998876543
No 270
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=32.74 E-value=1.1e+02 Score=31.45 Aligned_cols=47 Identities=30% Similarity=0.378 Sum_probs=29.0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 002276 671 KQELKSRDVQSKRMEDTIHGLDLKLKDKDLKIKSLQDKVKELETQLL 717 (943)
Q Consensus 671 K~eL~~~~~q~~~lE~~i~~l~~kl~e~d~~i~~LqekikeLE~qL~ 717 (943)
+++|...+.-+..+..++..|..++..++.+|+.|++++..++++..
T Consensus 12 q~ql~~ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~ 58 (190)
T 4emc_A 12 KQQIDSADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVK 58 (190)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34455555555666666666777777788888888888888887763
No 271
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=32.59 E-value=14 Score=44.09 Aligned_cols=46 Identities=33% Similarity=0.572 Sum_probs=30.5
Q ss_pred eecceeeCCCCCcccccccchhhHHHhhCCcceEEEeeCcccCcccccccc
Q 002276 409 FKFDAVFGPQADQVDVFQDTAPFANSVLDGYNVCIFAYGQTGTGKTFTMEG 459 (943)
Q Consensus 409 F~FD~VF~~~asQeeVFeev~pLV~svLdGyNvcIFAYGQTGSGKTyTM~G 459 (943)
|.+... .|...|..-+.. ++..+-.|... ....|.|||||||||..
T Consensus 2 ~~~~~~-~~~~~q~~ai~~---l~~~~~~~~~~-~~l~g~tgs~kt~~~a~ 47 (664)
T 1c4o_A 2 FRYRGP-SPKGDQPKAIAG---LVEALRDGERF-VTLLGATGTGKTVTMAK 47 (664)
T ss_dssp CCCCSC-CCCTTHHHHHHH---HHHHHHTTCSE-EEEEECTTSCHHHHHHH
T ss_pred CCCCCC-CCCCCChHHHHH---HHHHHhcCCCc-EEEEcCCCcHHHHHHHH
Confidence 444443 677777665543 56666667533 34579999999999964
No 272
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=32.59 E-value=1e+02 Score=26.98 Aligned_cols=29 Identities=24% Similarity=0.406 Sum_probs=13.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 002276 688 IHGLDLKLKDKDLKIKSLQDKVKELETQL 716 (943)
Q Consensus 688 i~~l~~kl~e~d~~i~~LqekikeLE~qL 716 (943)
+..|+..+..++.+|...+..|++++.+|
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L 49 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELEL 49 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444
No 273
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=32.43 E-value=2.7e+02 Score=24.85 Aligned_cols=18 Identities=22% Similarity=0.388 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002276 284 WFSSLRDLTRRLKIMKME 301 (943)
Q Consensus 284 l~~~L~~L~~~l~~~k~e 301 (943)
|...|++|.-++..|..|
T Consensus 24 L~qEi~~Lr~kv~elEnE 41 (81)
T 3qh9_A 24 LLQELRHLKIKVEELENE 41 (81)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555555555544443
No 274
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=32.32 E-value=3e+02 Score=25.33 Aligned_cols=57 Identities=23% Similarity=0.299 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 002276 660 LLRYKQMVEKTKQELKSRDVQSKRMEDTIHGLDLKLKDKDLKIKSLQDKVKELETQL 716 (943)
Q Consensus 660 l~rlk~~ie~LK~eL~~~~~q~~~lE~~i~~l~~kl~e~d~~i~~LqekikeLE~qL 716 (943)
+.+++..+..|..++...+..+..+...+..-......-+.....+..++++|...|
T Consensus 7 ~e~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasL 63 (97)
T 2eqb_B 7 YNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASL 63 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666655555555555554444444444555566677777777666
No 275
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=32.22 E-value=8.8 Score=44.06 Aligned_cols=17 Identities=35% Similarity=0.558 Sum_probs=15.3
Q ss_pred eEEEeeCcccCcccccc
Q 002276 441 VCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 441 vcIFAYGQTGSGKTyTM 457 (943)
-.++-||++|+|||++.
T Consensus 78 ~~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAA 94 (516)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 57888999999999986
No 276
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=32.19 E-value=4.4e+02 Score=27.18 Aligned_cols=12 Identities=8% Similarity=0.158 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHH
Q 002276 311 AYKKCAAEISEA 322 (943)
Q Consensus 311 ~~~~~~~~i~~~ 322 (943)
.|..++..++..
T Consensus 187 ~Y~~~v~~~n~~ 198 (301)
T 2efk_A 187 EYAAQLQRFNRD 198 (301)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344455444444
No 277
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=32.05 E-value=17 Score=36.80 Aligned_cols=25 Identities=24% Similarity=0.493 Sum_probs=17.7
Q ss_pred hHHHhhCCcceEEEeeCcccCcccccc
Q 002276 431 FANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 431 LV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
+++.+-.|--++ -.|++|||||+.+
T Consensus 15 ~l~~i~~Ge~~~--liG~nGsGKSTLl 39 (208)
T 3b85_A 15 YVDAIDTNTIVF--GLGPAGSGKTYLA 39 (208)
T ss_dssp HHHHHHHCSEEE--EECCTTSSTTHHH
T ss_pred HHHhccCCCEEE--EECCCCCCHHHHH
Confidence 455555555444 4799999999987
No 278
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=31.86 E-value=16 Score=37.89 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=16.5
Q ss_pred hCCcceEEEeeCcccCcccccc
Q 002276 436 LDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 436 LdGyNvcIFAYGQTGSGKTyTM 457 (943)
-.|.-..++-||+.|+|||++.
T Consensus 38 ~~~~~~~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 38 KDGNMPHMIISGMPGIGKTTSV 59 (323)
T ss_dssp HSCCCCCEEEECSTTSSHHHHH
T ss_pred HcCCCCeEEEECcCCCCHHHHH
Confidence 3443333888999999999886
No 279
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=31.83 E-value=2.6e+02 Score=24.43 Aligned_cols=10 Identities=30% Similarity=0.418 Sum_probs=4.3
Q ss_pred HHHHHHHHHH
Q 002276 230 RTLEELKREN 239 (943)
Q Consensus 230 ~~i~eLe~en 239 (943)
.++++++.+|
T Consensus 7 ~kLq~~E~~N 16 (72)
T 3cve_A 7 MKLQEVEIRN 16 (72)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 3444444444
No 280
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=31.47 E-value=1.4e+02 Score=23.61 Aligned_cols=34 Identities=21% Similarity=0.359 Sum_probs=19.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 689 HGLDLKLKDKDLKIKSLQDKVKELETQLLVERKL 722 (943)
Q Consensus 689 ~~l~~kl~e~d~~i~~LqekikeLE~qL~~erkl 722 (943)
..|+.+.++.+..+..|++++..|+.+..+.|+.
T Consensus 6 ~eLE~r~k~le~~naeLEervstLq~EN~mLRqv 39 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLSTLQNENQMLRHI 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3445555555556666666666666666555543
No 281
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=31.27 E-value=13 Score=41.95 Aligned_cols=17 Identities=35% Similarity=0.704 Sum_probs=15.1
Q ss_pred eEEEeeCcccCcccccc
Q 002276 441 VCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 441 vcIFAYGQTGSGKTyTM 457 (943)
..|+-||++|+|||+..
T Consensus 168 ~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLA 184 (444)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46888999999999986
No 282
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=31.26 E-value=13 Score=37.02 Aligned_cols=16 Identities=31% Similarity=0.393 Sum_probs=13.2
Q ss_pred EEEeeCcccCcccccc
Q 002276 442 CIFAYGQTGTGKTFTM 457 (943)
Q Consensus 442 cIFAYGQTGSGKTyTM 457 (943)
.|.-.|++|||||.++
T Consensus 10 ~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVR 25 (208)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4556799999999886
No 283
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=31.06 E-value=6.6e+02 Score=28.90 Aligned_cols=16 Identities=13% Similarity=0.058 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 002276 214 LKMSYECQKKELTEAK 229 (943)
Q Consensus 214 L~~~~e~qk~eL~~~e 229 (943)
+...+++|+..+.++.
T Consensus 98 V~~~LqeLe~~l~~ls 113 (464)
T 1m1j_B 98 VKPVLRDLKDRVAKFS 113 (464)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHh
Confidence 4444444444444443
No 284
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=30.75 E-value=12 Score=39.92 Aligned_cols=24 Identities=29% Similarity=0.625 Sum_probs=16.7
Q ss_pred HhhCCcceEEEeeCcccCcccccc
Q 002276 434 SVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 434 svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
.+++|++..|...|.+|+|||..|
T Consensus 12 ~~l~~~~~~I~lvG~nG~GKSTLl 35 (301)
T 2qnr_A 12 SVKKGFEFTLMVVGESGLGKSTLI 35 (301)
T ss_dssp ------CEEEEEEEETTSSHHHHH
T ss_pred EEEcCCCEEEEEECCCCCCHHHHH
Confidence 368899999999999999999876
No 285
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=30.68 E-value=14 Score=42.44 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=20.4
Q ss_pred hhHHHhhCCcceEEEeeCcccCcccccc
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
..|..+++|.++ +..++||||||.+.
T Consensus 32 ~~i~~il~g~d~--lv~apTGsGKTl~~ 57 (523)
T 1oyw_A 32 EIIDTVLSGRDC--LVVMPTGGGKSLCY 57 (523)
T ss_dssp HHHHHHHTTCCE--EEECSCHHHHHHHH
T ss_pred HHHHHHHcCCCE--EEECCCCcHHHHHH
Confidence 467778899875 45679999999864
No 286
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=30.53 E-value=14 Score=35.91 Aligned_cols=16 Identities=19% Similarity=0.436 Sum_probs=12.9
Q ss_pred EEEeeCcccCcccccc
Q 002276 442 CIFAYGQTGTGKTFTM 457 (943)
Q Consensus 442 cIFAYGQTGSGKTyTM 457 (943)
.|.-.|++|||||..+
T Consensus 7 ~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIK 22 (180)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556699999999876
No 287
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=30.44 E-value=14 Score=42.95 Aligned_cols=16 Identities=44% Similarity=0.657 Sum_probs=13.7
Q ss_pred EEEeeCcccCcccccc
Q 002276 442 CIFAYGQTGTGKTFTM 457 (943)
Q Consensus 442 cIFAYGQTGSGKTyTM 457 (943)
+|.-.|.+|||||.++
T Consensus 295 VI~LVGpNGSGKTTLl 310 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTI 310 (503)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCcccHHHHH
Confidence 5666799999999987
No 288
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=29.87 E-value=2.2e+02 Score=24.94 Aligned_cols=16 Identities=13% Similarity=0.208 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 002276 224 ELTEAKRTLEELKREN 239 (943)
Q Consensus 224 eL~~~e~~i~eLe~en 239 (943)
+-..++.++..++...
T Consensus 15 ~N~~Le~~v~~le~~L 30 (72)
T 3cve_A 15 RNKDLEGQLSEMEQRL 30 (72)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHH
Confidence 3333444444444333
No 289
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=29.76 E-value=17 Score=42.80 Aligned_cols=26 Identities=35% Similarity=0.414 Sum_probs=18.6
Q ss_pred hHHHhhCCcceEEEeeCcccCccccccc
Q 002276 431 FANSVLDGYNVCIFAYGQTGTGKTFTME 458 (943)
Q Consensus 431 LV~svLdGyNvcIFAYGQTGSGKTyTM~ 458 (943)
.|..++. +..++..|+.|||||+|+.
T Consensus 188 av~~~l~--~~~~li~GppGTGKT~~~~ 213 (624)
T 2gk6_A 188 AVKTVLQ--RPLSLIQGPPGTGKTVTSA 213 (624)
T ss_dssp HHHHHHT--CSEEEEECCTTSCHHHHHH
T ss_pred HHHHHhc--CCCeEEECCCCCCHHHHHH
Confidence 4455554 2345678999999999974
No 290
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=29.72 E-value=6.2e+02 Score=28.13 Aligned_cols=31 Identities=13% Similarity=0.220 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 213 RLKMSYECQKKELTEAKRTLEELKRENQLKN 243 (943)
Q Consensus 213 kL~~~~e~qk~eL~~~e~~i~eLe~en~~K~ 243 (943)
...+.+.....+...+-.....+..+.+.|.
T Consensus 130 e~~~~~~~~~~~~~~~~~~~~~~~~e~~~k~ 160 (373)
T 3hhm_B 130 EYNTQFQEKSREYDRLYEEYTRTSQEIQMKR 160 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccHHHHHHHHhccchHHHHHHH
Confidence 3334444444444444444444444444444
No 291
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=29.71 E-value=21 Score=35.12 Aligned_cols=28 Identities=25% Similarity=0.380 Sum_probs=20.4
Q ss_pred hhHHHhhC-Cc--ceEEEeeCcccCcccccc
Q 002276 430 PFANSVLD-GY--NVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 430 pLV~svLd-Gy--NvcIFAYGQTGSGKTyTM 457 (943)
+-++.++. |. .-.+.-+|++|||||..+
T Consensus 12 ~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 12 KSLDKLLGGGIETQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp HHHHHHTTSSEESSEEEEEEESTTSSHHHHH
T ss_pred hhHHhHhcCCCCCCcEEEEECCCCCCHHHHH
Confidence 56677774 43 245677899999999886
No 292
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=29.53 E-value=91 Score=34.32 Aligned_cols=12 Identities=25% Similarity=0.454 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 002276 699 DLKIKSLQDKVK 710 (943)
Q Consensus 699 d~~i~~Lqekik 710 (943)
+..|..|+..++
T Consensus 25 ~~~i~~L~~~l~ 36 (323)
T 1lwu_C 25 DAQIQELSEMWR 36 (323)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 293
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=29.28 E-value=18 Score=43.72 Aligned_cols=26 Identities=35% Similarity=0.604 Sum_probs=20.4
Q ss_pred hhHHHhhCCcceEEEeeCcccCcccccc
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
..+..++.|.| ++..++||||||.+.
T Consensus 255 ~~i~~~l~~~~--~ll~~~TGsGKTl~~ 280 (797)
T 4a2q_A 255 ELAQPAINGKN--ALICAPTGSGKTFVS 280 (797)
T ss_dssp HHHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHHhCCC--EEEEeCCCChHHHHH
Confidence 35667788977 456789999999875
No 294
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=29.04 E-value=1.2e+02 Score=26.74 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 002276 678 DVQSKRMEDTIHGLDLKLKDKDLKIKSLQDKVKELETQ 715 (943)
Q Consensus 678 ~~q~~~lE~~i~~l~~kl~e~d~~i~~LqekikeLE~q 715 (943)
..++...+..+..|...+.++...|..|+.++..|..+
T Consensus 20 E~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~r 57 (78)
T 3efg_A 20 ETRLSFQEQALTELSEALADARLTGARNAELIRHLLED 57 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444444433
No 295
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=28.94 E-value=18 Score=44.81 Aligned_cols=27 Identities=33% Similarity=0.560 Sum_probs=20.6
Q ss_pred hhHHHhhCCcceEEEeeCcccCccccccc
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTFTME 458 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTyTM~ 458 (943)
..+..++.|.|+ +..++||||||.+..
T Consensus 255 ~ai~~il~g~~~--ll~a~TGsGKTl~~~ 281 (936)
T 4a2w_A 255 ELAQPAINGKNA--LICAPTGSGKTFVSI 281 (936)
T ss_dssp HHHHHHHTTCCE--EEECCTTSCHHHHHH
T ss_pred HHHHHHHcCCCE--EEEeCCCchHHHHHH
Confidence 356677889874 567899999998853
No 296
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=28.94 E-value=2.9e+02 Score=26.19 Aligned_cols=18 Identities=28% Similarity=0.233 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 002276 211 YERLKMSYECQKKELTEA 228 (943)
Q Consensus 211 ~~kL~~~~e~qk~eL~~~ 228 (943)
++.|..+++.++.++..+
T Consensus 17 Ie~Lkreie~lk~ele~l 34 (120)
T 3i00_A 17 IERLYREISGLKAQLENM 34 (120)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555666665555554
No 297
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=28.93 E-value=15 Score=39.52 Aligned_cols=16 Identities=38% Similarity=0.609 Sum_probs=13.7
Q ss_pred EEEeeCcccCcccccc
Q 002276 442 CIFAYGQTGTGKTFTM 457 (943)
Q Consensus 442 cIFAYGQTGSGKTyTM 457 (943)
+|.-.|++|||||.|+
T Consensus 102 vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSL 117 (302)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4566799999999997
No 298
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=28.87 E-value=14 Score=36.03 Aligned_cols=15 Identities=40% Similarity=0.645 Sum_probs=12.3
Q ss_pred EEeeCcccCcccccc
Q 002276 443 IFAYGQTGTGKTFTM 457 (943)
Q Consensus 443 IFAYGQTGSGKTyTM 457 (943)
|.-.|++|||||++|
T Consensus 4 i~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 4 IVISGPSGTGKSTLL 18 (186)
T ss_dssp EEEESSSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 344699999999886
No 299
>1s35_A Beta-I spectrin, spectrin beta chain, erythrocyte; two repeats of spectrin, alpha helical linker region, 3- helix coiled-coils, beta spectrin; 2.40A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=28.80 E-value=4.1e+02 Score=25.78 Aligned_cols=16 Identities=13% Similarity=0.343 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 002276 240 QLKNKEYQETWKSLQE 255 (943)
Q Consensus 240 ~~K~~E~~e~~~~l~~ 255 (943)
+.++..+.+.|..+..
T Consensus 79 ~~~l~~L~~~w~~L~~ 94 (214)
T 1s35_A 79 GQRLEGLDTGWDALGR 94 (214)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555555544
No 300
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=28.79 E-value=15 Score=38.84 Aligned_cols=19 Identities=32% Similarity=0.627 Sum_probs=15.8
Q ss_pred cceEEEeeCcccCcccccc
Q 002276 439 YNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 439 yNvcIFAYGQTGSGKTyTM 457 (943)
|+-+|...|++|+|||..|
T Consensus 1 f~f~v~lvG~nGaGKSTLl 19 (270)
T 3sop_A 1 FDFNIMVVGQSGLGKSTLV 19 (270)
T ss_dssp CEEEEEEEESSSSSHHHHH
T ss_pred CeeEEEEECCCCCCHHHHH
Confidence 4567788899999999876
No 301
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=28.79 E-value=1.8e+02 Score=25.71 Aligned_cols=51 Identities=14% Similarity=0.134 Sum_probs=28.1
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHhH------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 673 ELKSRDVQSKRMEDTIHGLDLKLKDK------DLKIKSLQDKVKELETQLLVERKLA 723 (943)
Q Consensus 673 eL~~~~~q~~~lE~~i~~l~~kl~e~------d~~i~~LqekikeLE~qL~~erkl~ 723 (943)
+|..+..++..++..+..++..+.+- -..+..+..++.+++.+|......|
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erW 79 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERW 79 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555431 2345667777777777775544444
No 302
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=28.73 E-value=17 Score=34.32 Aligned_cols=17 Identities=29% Similarity=0.401 Sum_probs=14.1
Q ss_pred eEEEeeCcccCcccccc
Q 002276 441 VCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 441 vcIFAYGQTGSGKTyTM 457 (943)
..|+-.|..|||||+..
T Consensus 3 ~~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEecCCCCCHHHHH
Confidence 35788999999999853
No 303
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=28.67 E-value=24 Score=38.50 Aligned_cols=18 Identities=39% Similarity=0.517 Sum_probs=14.5
Q ss_pred ceEEEeeCcccCcccccc
Q 002276 440 NVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 440 NvcIFAYGQTGSGKTyTM 457 (943)
...|.-.|++|||||.|+
T Consensus 129 g~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345666799999999997
No 304
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=28.66 E-value=3.6e+02 Score=25.63 Aligned_cols=14 Identities=21% Similarity=0.207 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 002276 286 SSLRDLTRRLKIMK 299 (943)
Q Consensus 286 ~~L~~L~~~l~~~k 299 (943)
..+..|..-|+..+
T Consensus 53 qTV~tL~~SL~~ek 66 (121)
T 3mq7_A 53 HTVMALMASLDAEK 66 (121)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444333
No 305
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=28.61 E-value=18 Score=36.00 Aligned_cols=28 Identities=32% Similarity=0.511 Sum_probs=19.8
Q ss_pred hhHHHhhCC-c--ceEEEeeCcccCcccccc
Q 002276 430 PFANSVLDG-Y--NVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 430 pLV~svLdG-y--NvcIFAYGQTGSGKTyTM 457 (943)
+-++.++.| + ...+.-+|.+|||||..+
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~ 40 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFS 40 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHH
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHH
Confidence 445666543 2 346777899999999985
No 306
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=28.58 E-value=16 Score=36.10 Aligned_cols=15 Identities=40% Similarity=0.616 Sum_probs=12.7
Q ss_pred EEeeCcccCcccccc
Q 002276 443 IFAYGQTGTGKTFTM 457 (943)
Q Consensus 443 IFAYGQTGSGKTyTM 457 (943)
+.-.|++|||||+.+
T Consensus 3 i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 3 IIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 455899999999986
No 307
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=28.47 E-value=14 Score=35.54 Aligned_cols=17 Identities=24% Similarity=0.436 Sum_probs=14.0
Q ss_pred eEEEeeCcccCcccccc
Q 002276 441 VCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 441 vcIFAYGQTGSGKTyTM 457 (943)
.+|.-.|..|||||+.+
T Consensus 10 ~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIA 26 (191)
T ss_dssp EEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35677899999999875
No 308
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=28.45 E-value=16 Score=36.49 Aligned_cols=17 Identities=41% Similarity=0.509 Sum_probs=13.6
Q ss_pred EEEeeCcccCccccccc
Q 002276 442 CIFAYGQTGTGKTFTME 458 (943)
Q Consensus 442 cIFAYGQTGSGKTyTM~ 458 (943)
.+.-+|++|||||..+.
T Consensus 32 ~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEEeCCCCCHHHHHH
Confidence 44558999999999873
No 309
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=28.32 E-value=2.3e+02 Score=25.13 Aligned_cols=8 Identities=13% Similarity=0.326 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q 002276 228 AKRTLEEL 235 (943)
Q Consensus 228 ~e~~i~eL 235 (943)
++.++..|
T Consensus 25 Le~~v~~l 32 (79)
T 3cvf_A 25 LEHQLRAM 32 (79)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 310
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=28.26 E-value=17 Score=34.78 Aligned_cols=16 Identities=38% Similarity=0.480 Sum_probs=13.4
Q ss_pred EEEeeCcccCcccccc
Q 002276 442 CIFAYGQTGTGKTFTM 457 (943)
Q Consensus 442 cIFAYGQTGSGKTyTM 457 (943)
.|+-.|.+|||||+.-
T Consensus 7 ~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVG 22 (185)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778899999999763
No 311
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=28.04 E-value=20 Score=40.11 Aligned_cols=16 Identities=25% Similarity=0.181 Sum_probs=13.8
Q ss_pred EEEeeCcccCcccccc
Q 002276 442 CIFAYGQTGTGKTFTM 457 (943)
Q Consensus 442 cIFAYGQTGSGKTyTM 457 (943)
.++..|+||||||...
T Consensus 4 ~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 4 LTVLDLHPGAGKTRRV 19 (431)
T ss_dssp EEEEECCTTSCTTTTH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4678899999999984
No 312
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=27.98 E-value=3.5e+02 Score=24.66 Aligned_cols=11 Identities=36% Similarity=0.477 Sum_probs=4.9
Q ss_pred HHHHHHHHHHh
Q 002276 253 LQELQNELMRK 263 (943)
Q Consensus 253 l~~~q~el~~~ 263 (943)
+..+++.|.-+
T Consensus 6 La~le~sLe~E 16 (101)
T 1d7m_A 6 LAGLENSLESE 16 (101)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhhh
Confidence 34444555443
No 313
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=27.82 E-value=1.5e+02 Score=29.76 Aligned_cols=19 Identities=11% Similarity=0.148 Sum_probs=15.7
Q ss_pred cCCcccccCCCCCCCCCcc
Q 002276 768 ENNPEMTEQPRLPNRTGRA 786 (943)
Q Consensus 768 en~p~~~~~~~~p~~~~~~ 786 (943)
.+.|.+.+.-.||..+|.+
T Consensus 66 ~~~PhLvnLn~Dp~ls~~l 84 (184)
T 4egx_A 66 KKTPHLVNLNEDPLMSECL 84 (184)
T ss_dssp SSSCEEEECCCCTTCSSCS
T ss_pred CCCceEEeccCCcccCceE
Confidence 3679999999999888844
No 314
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=27.79 E-value=16 Score=35.35 Aligned_cols=16 Identities=31% Similarity=0.393 Sum_probs=13.3
Q ss_pred EEEeeCcccCcccccc
Q 002276 442 CIFAYGQTGTGKTFTM 457 (943)
Q Consensus 442 cIFAYGQTGSGKTyTM 457 (943)
.|.-.|.+|||||+.+
T Consensus 8 ~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVR 23 (207)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4666799999999875
No 315
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=27.77 E-value=22 Score=44.51 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=19.4
Q ss_pred hhHHHhhCCcceEEEeeCcccCccccc
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTFT 456 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTyT 456 (943)
..|..++.|.+ ++..|+||||||.+
T Consensus 46 ~aI~~il~g~~--vlv~apTGsGKTlv 70 (997)
T 4a4z_A 46 EAVYHLEQGDS--VFVAAHTSAGKTVV 70 (997)
T ss_dssp HHHHHHHTTCE--EEEECCTTSCSHHH
T ss_pred HHHHHHHcCCC--EEEEECCCCcHHHH
Confidence 35667788865 67799999999964
No 316
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=27.57 E-value=18 Score=43.14 Aligned_cols=29 Identities=21% Similarity=0.180 Sum_probs=21.5
Q ss_pred hhHHHhhCCcceEEEeeCcccCccccccc
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTFTME 458 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTyTM~ 458 (943)
.+++.+.......++-||.+|+|||+.+.
T Consensus 197 ~l~~~l~~~~~~~vlL~G~~GtGKT~la~ 225 (758)
T 1r6b_X 197 RAIQVLCRRRKNNPLLVGESGVGKTAIAE 225 (758)
T ss_dssp HHHHHHTSSSSCEEEEECCTTSSHHHHHH
T ss_pred HHHHHHhccCCCCeEEEcCCCCCHHHHHH
Confidence 44555555556667889999999999874
No 317
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=27.53 E-value=15 Score=36.52 Aligned_cols=16 Identities=25% Similarity=0.474 Sum_probs=13.2
Q ss_pred EEEeeCcccCcccccc
Q 002276 442 CIFAYGQTGTGKTFTM 457 (943)
Q Consensus 442 cIFAYGQTGSGKTyTM 457 (943)
.|.-.|++|||||.+|
T Consensus 6 ~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLL 21 (198)
T ss_dssp CEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3556799999999987
No 318
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=27.35 E-value=18 Score=38.93 Aligned_cols=16 Identities=38% Similarity=0.654 Sum_probs=13.1
Q ss_pred EEEeeCcccCcccccc
Q 002276 442 CIFAYGQTGTGKTFTM 457 (943)
Q Consensus 442 cIFAYGQTGSGKTyTM 457 (943)
+|.-.|++|||||.++
T Consensus 104 vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTI 119 (304)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4455699999999997
No 319
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=27.33 E-value=2.3e+02 Score=22.93 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 002276 227 EAKRTLEELKRENQLKNKEYQE 248 (943)
Q Consensus 227 ~~e~~i~eLe~en~~K~~E~~e 248 (943)
.++..+.+.+.....+..++++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~ 30 (60)
T 3htk_A 9 TLENQVEELTEKCSLKTDEFLK 30 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444443333333334433
No 320
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=27.25 E-value=15 Score=41.28 Aligned_cols=27 Identities=11% Similarity=-0.034 Sum_probs=19.8
Q ss_pred hhHHHhhCCcceEEEeeCcccCccccccc
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTFTME 458 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTyTM~ 458 (943)
..|..++.|.+ ++..|+||||||.+..
T Consensus 120 ~ai~~~~~~~~--~ll~~~tGsGKT~~~~ 146 (510)
T 2oca_A 120 DAVFEGLVNRR--RILNLPTSAGRSLIQA 146 (510)
T ss_dssp HHHHHHHHHSE--EEEECCSTTTHHHHHH
T ss_pred HHHHHHHhcCC--cEEEeCCCCCHHHHHH
Confidence 34566666655 4667999999999964
No 321
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=27.10 E-value=15 Score=39.31 Aligned_cols=16 Identities=50% Similarity=0.821 Sum_probs=13.0
Q ss_pred EEEeeCcccCcccccc
Q 002276 442 CIFAYGQTGTGKTFTM 457 (943)
Q Consensus 442 cIFAYGQTGSGKTyTM 457 (943)
.|.-.|.+|+|||+|+
T Consensus 107 vi~lvG~~GsGKTTl~ 122 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTL 122 (296)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3445699999999997
No 322
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=27.06 E-value=16 Score=37.87 Aligned_cols=19 Identities=26% Similarity=0.144 Sum_probs=15.6
Q ss_pred eEEEeeCcccCcccccccc
Q 002276 441 VCIFAYGQTGTGKTFTMEG 459 (943)
Q Consensus 441 vcIFAYGQTGSGKTyTM~G 459 (943)
..++-||..|||||..+++
T Consensus 13 ~i~litG~mGsGKTT~ll~ 31 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIR 31 (223)
T ss_dssp EEEEEECSTTSCHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHH
Confidence 4678889999999988754
No 323
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=26.98 E-value=17 Score=35.03 Aligned_cols=16 Identities=31% Similarity=0.426 Sum_probs=13.3
Q ss_pred EEEeeCcccCcccccc
Q 002276 442 CIFAYGQTGTGKTFTM 457 (943)
Q Consensus 442 cIFAYGQTGSGKTyTM 457 (943)
.|.-.|.+|||||+++
T Consensus 4 ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 4566799999999986
No 324
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=26.87 E-value=20 Score=36.04 Aligned_cols=15 Identities=27% Similarity=0.379 Sum_probs=8.5
Q ss_pred EEeeCcccCcccccc
Q 002276 443 IFAYGQTGTGKTFTM 457 (943)
Q Consensus 443 IFAYGQTGSGKTyTM 457 (943)
|.-.|++|||||.++
T Consensus 30 i~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 30 LVLSSPSGCGKTTVA 44 (231)
T ss_dssp EEEECSCC----CHH
T ss_pred EEEECCCCCCHHHHH
Confidence 445699999999886
No 325
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=26.60 E-value=3.3e+02 Score=23.97 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 214 LKMSYECQKKELTEAKRTLEELKREN 239 (943)
Q Consensus 214 L~~~~e~qk~eL~~~e~~i~eLe~en 239 (943)
.+.+++.+..++..++.++.+|+.++
T Consensus 20 eqrEle~le~~Ie~LE~~i~~le~~l 45 (89)
T 2lw1_A 20 LQRELEQLPQLLEDLEAKLEALQTQV 45 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555554444
No 326
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=26.55 E-value=17 Score=36.00 Aligned_cols=18 Identities=22% Similarity=0.209 Sum_probs=14.8
Q ss_pred ceEEEeeCcccCcccccc
Q 002276 440 NVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 440 NvcIFAYGQTGSGKTyTM 457 (943)
...|.-.|.+|||||+.+
T Consensus 22 ~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp SEEEEEEECTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 356777899999999875
No 327
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=26.53 E-value=17 Score=42.12 Aligned_cols=20 Identities=20% Similarity=0.293 Sum_probs=16.4
Q ss_pred cceEEEeeCcccCccccccc
Q 002276 439 YNVCIFAYGQTGTGKTFTME 458 (943)
Q Consensus 439 yNvcIFAYGQTGSGKTyTM~ 458 (943)
.+..++..|..|||||+|+.
T Consensus 21 ~~~~~lV~a~aGsGKT~~l~ 40 (647)
T 3lfu_A 21 PRSNLLVLAGAGSGKTRVLV 40 (647)
T ss_dssp CSSCEEEEECTTSCHHHHHH
T ss_pred CCCCEEEEECCCCCHHHHHH
Confidence 35567888999999999985
No 328
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=26.50 E-value=8.1e+02 Score=28.41 Aligned_cols=10 Identities=40% Similarity=0.411 Sum_probs=5.2
Q ss_pred Ccccccccee
Q 002276 69 SNELVDGKSM 78 (943)
Q Consensus 69 ~~~~~~~~~~ 78 (943)
++.-|.|||-
T Consensus 270 ~~~~~~~~~~ 279 (602)
T 1cii_A 270 SPEKFPGRSS 279 (602)
T ss_dssp CTTTSCEEEE
T ss_pred CcccCCCCCC
Confidence 3445556653
No 329
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=26.40 E-value=19 Score=34.09 Aligned_cols=17 Identities=24% Similarity=0.290 Sum_probs=14.5
Q ss_pred eEEEeeCcccCcccccc
Q 002276 441 VCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 441 vcIFAYGQTGSGKTyTM 457 (943)
..|+-.|..|||||+..
T Consensus 4 ~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36888999999999875
No 330
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=26.35 E-value=25 Score=39.57 Aligned_cols=36 Identities=19% Similarity=0.261 Sum_probs=22.9
Q ss_pred CCCcccccccchhhHHHhhCCcceEEEeeCcccCcccccc
Q 002276 418 QADQVDVFQDTAPFANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 418 ~asQeeVFeev~pLV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
+..|.+++..+. ..+.+| +..++..|..|||||+++
T Consensus 27 n~~Q~~av~~~~---~~i~~~-~~~~li~G~aGTGKT~ll 62 (459)
T 3upu_A 27 TEGQKNAFNIVM---KAIKEK-KHHVTINGPAGTGATTLT 62 (459)
T ss_dssp CHHHHHHHHHHH---HHHHSS-SCEEEEECCTTSCHHHHH
T ss_pred CHHHHHHHHHHH---HHHhcC-CCEEEEEeCCCCCHHHHH
Confidence 345665554432 222233 347888999999999886
No 331
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=26.12 E-value=23 Score=39.83 Aligned_cols=16 Identities=25% Similarity=0.237 Sum_probs=13.2
Q ss_pred EEEeeCcccCcccccc
Q 002276 442 CIFAYGQTGTGKTFTM 457 (943)
Q Consensus 442 cIFAYGQTGSGKTyTM 457 (943)
.++..++||||||...
T Consensus 23 ~vlv~a~TGsGKT~~~ 38 (459)
T 2z83_A 23 MTVLDLHPGSGKTRKI 38 (459)
T ss_dssp EEEECCCTTSCTTTTH
T ss_pred cEEEECCCCCCHHHHH
Confidence 3567899999999983
No 332
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=25.94 E-value=7.6e+02 Score=27.92 Aligned_cols=25 Identities=4% Similarity=0.001 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 283 RWFSSLRDLTRRLKIMKMEHINLFE 307 (943)
Q Consensus 283 kl~~~L~~L~~~l~~~k~e~~~l~~ 307 (943)
++..+++..+.++...+.++.....
T Consensus 189 K~~~k~~k~~~~~~~a~~~Y~~~v~ 213 (486)
T 3haj_A 189 KLQDKIEKCKQDVLKTKEKYEKSLK 213 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433333
No 333
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=25.94 E-value=22 Score=39.87 Aligned_cols=21 Identities=24% Similarity=0.262 Sum_probs=16.2
Q ss_pred hhCCcceEEEeeCcccCcccccc
Q 002276 435 VLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 435 vLdGyNvcIFAYGQTGSGKTyTM 457 (943)
+++|.| ++..|+||||||...
T Consensus 5 l~~g~~--vlv~a~TGSGKT~~~ 25 (440)
T 1yks_A 5 LKKGMT--TVLDFHPGAGKTRRF 25 (440)
T ss_dssp TSTTCE--EEECCCTTSSTTTTH
T ss_pred hhCCCC--EEEEcCCCCCHHHHH
Confidence 456665 567889999999984
No 334
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=25.93 E-value=19 Score=35.73 Aligned_cols=15 Identities=20% Similarity=0.428 Sum_probs=12.2
Q ss_pred EEeeCcccCcccccc
Q 002276 443 IFAYGQTGTGKTFTM 457 (943)
Q Consensus 443 IFAYGQTGSGKTyTM 457 (943)
+.-.|++|||||.++
T Consensus 23 ~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 23 VVLSGPSAVGKSTVV 37 (207)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 444699999999886
No 335
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=25.52 E-value=29 Score=35.59 Aligned_cols=17 Identities=41% Similarity=0.600 Sum_probs=14.2
Q ss_pred eEEEeeCcccCcccccc
Q 002276 441 VCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 441 vcIFAYGQTGSGKTyTM 457 (943)
..|+-.|+.|||||+..
T Consensus 33 ~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIH 49 (253)
T ss_dssp EEEEEESCGGGTTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46888999999999763
No 336
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=25.44 E-value=3.7e+02 Score=24.16 Aligned_cols=31 Identities=13% Similarity=0.219 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 284 WFSSLRDLTRRLKIMKMEHINLFEEALAYKK 314 (943)
Q Consensus 284 l~~~L~~L~~~l~~~k~e~~~l~~e~~~~~~ 314 (943)
+...|.+|...+..+..+...+.-++..+..
T Consensus 54 ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~ 84 (93)
T 3s4r_A 54 YEEEMRELRRQVDQLTNDKARVEVERDNLAE 84 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666666666666555555555444333
No 337
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=25.44 E-value=19 Score=34.42 Aligned_cols=16 Identities=38% Similarity=0.412 Sum_probs=13.8
Q ss_pred EEEeeCcccCcccccc
Q 002276 442 CIFAYGQTGTGKTFTM 457 (943)
Q Consensus 442 cIFAYGQTGSGKTyTM 457 (943)
.|+-.|..|||||+..
T Consensus 13 ~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 13 NILLTGTPGVGKTTLG 28 (180)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEEeCCCCCHHHHH
Confidence 4778999999999865
No 338
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=25.21 E-value=14 Score=36.57 Aligned_cols=17 Identities=24% Similarity=0.171 Sum_probs=14.5
Q ss_pred EEEeeCcccCccccccc
Q 002276 442 CIFAYGQTGTGKTFTME 458 (943)
Q Consensus 442 cIFAYGQTGSGKTyTM~ 458 (943)
.++-||..|||||+.+.
T Consensus 5 i~vi~G~~gsGKTT~ll 21 (184)
T 2orw_A 5 LTVITGPMYSGKTTELL 21 (184)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 46779999999999874
No 339
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=24.82 E-value=13 Score=45.43 Aligned_cols=39 Identities=21% Similarity=0.259 Sum_probs=26.2
Q ss_pred CCCCCcccccccchhhHHHhhCCcceEEEeeCcccCcccccc
Q 002276 416 GPQADQVDVFQDTAPFANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 416 ~~~asQeeVFeev~pLV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
.+..-|..++..+ ....-.|....++..|+||||||.+.
T Consensus 368 ~lt~~Q~~ai~~I---~~~l~~~~~~~~Ll~a~TGSGKTlva 406 (780)
T 1gm5_A 368 KLTNAQKRAHQEI---RNDMISEKPMNRLLQGDVGSGKTVVA 406 (780)
T ss_dssp CCCHHHHHHHHHH---HHHHHSSSCCCCEEECCSSSSHHHHH
T ss_pred CCCHHHHHHHHHH---HhhccccCCCcEEEEcCCCCCHHHHH
Confidence 4555666665543 33344566556788999999999875
No 340
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=24.76 E-value=4e+02 Score=24.31 Aligned_cols=34 Identities=21% Similarity=0.208 Sum_probs=27.1
Q ss_pred cccccCccCcchhHHHHHHHHHHHHHHHHHHHHH
Q 002276 198 STKDSGERGVKGDYERLKMSYECQKKELTEAKRT 231 (943)
Q Consensus 198 ~~~~~~~~~~~~e~~kL~~~~e~qk~eL~~~e~~ 231 (943)
..+|+.+.-.+...++|.+++..+.++++.....
T Consensus 4 ~~~d~s~LPpeqRkkkL~~Ki~el~~ei~ke~~~ 37 (98)
T 2ke4_A 4 MTEDFSHLPPEQQRKRLQQQLEERSRELQKEVDQ 37 (98)
T ss_dssp CCSCSSSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578888888889999998888888888775444
No 341
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=24.69 E-value=20 Score=42.66 Aligned_cols=21 Identities=33% Similarity=0.468 Sum_probs=16.0
Q ss_pred hhCCcceEEEeeCcccCcccccc
Q 002276 435 VLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 435 vLdGyNvcIFAYGQTGSGKTyTM 457 (943)
+.+|.| ++..|+||||||...
T Consensus 36 ~~~~~~--~lv~apTGsGKT~~~ 56 (720)
T 2zj8_A 36 ILEGKN--ALISIPTASGKTLIA 56 (720)
T ss_dssp GGGTCE--EEEECCGGGCHHHHH
T ss_pred hcCCCc--EEEEcCCccHHHHHH
Confidence 445554 678899999999764
No 342
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=24.61 E-value=18 Score=36.16 Aligned_cols=16 Identities=38% Similarity=0.627 Sum_probs=13.6
Q ss_pred EEEeeCcccCcccccc
Q 002276 442 CIFAYGQTGTGKTFTM 457 (943)
Q Consensus 442 cIFAYGQTGSGKTyTM 457 (943)
.|.-.|++|||||.++
T Consensus 3 ~i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLI 18 (189)
T ss_dssp CEEEESCCSSCHHHHH
T ss_pred EEEEECCCCChHHHHH
Confidence 3566799999999987
No 343
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=24.54 E-value=4.5e+02 Score=24.77 Aligned_cols=64 Identities=17% Similarity=0.205 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 659 ELLRYKQMVEKTKQELKSRDVQSKRMEDTIHGLDLKLKDKDLKIKSLQDKVKELETQLLVERKLARQ 725 (943)
Q Consensus 659 el~rlk~~ie~LK~eL~~~~~q~~~lE~~i~~l~~kl~e~d~~i~~LqekikeLE~qL~~erkl~rq 725 (943)
+...++.+...|+.+|.........++..+ ..+..+...++..|..++..-|..|...++...+
T Consensus 7 ~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w---~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq 70 (112)
T 1x79_B 7 QVKKLQLMLRQANDQLEKTMKDKQELEDFI---KQSSEDSSHQISALVLRAQASEILLEELQQGLSQ 70 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666655544444555543 3445556667888999999888888776655444
No 344
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=24.31 E-value=23 Score=35.10 Aligned_cols=18 Identities=22% Similarity=0.298 Sum_probs=13.9
Q ss_pred ceEEEeeCcccCcccccc
Q 002276 440 NVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 440 NvcIFAYGQTGSGKTyTM 457 (943)
.-.|.-.|.+|||||+.+
T Consensus 22 g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp CEEEEEECCTTSCTHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345556799999999876
No 345
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=24.10 E-value=16 Score=39.62 Aligned_cols=19 Identities=42% Similarity=0.616 Sum_probs=14.7
Q ss_pred CCcceEEEeeCcccCcccccc
Q 002276 437 DGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 437 dGyNvcIFAYGQTGSGKTyTM 457 (943)
.|-+ +.-.|+||||||.++
T Consensus 170 ~g~~--v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 170 IGKN--VIVCGGTGSGKTTYI 188 (330)
T ss_dssp HTCC--EEEEESTTSCHHHHH
T ss_pred CCCE--EEEECCCCCCHHHHH
Confidence 4654 455699999999986
No 346
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=24.05 E-value=19 Score=34.47 Aligned_cols=16 Identities=25% Similarity=0.283 Sum_probs=13.5
Q ss_pred EEEeeCcccCcccccc
Q 002276 442 CIFAYGQTGTGKTFTM 457 (943)
Q Consensus 442 cIFAYGQTGSGKTyTM 457 (943)
+..-+|++|||||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 4567899999999876
No 347
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=24.04 E-value=4.9e+02 Score=25.06 Aligned_cols=25 Identities=20% Similarity=0.115 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 213 RLKMSYECQKKELTEAKRTLEELKR 237 (943)
Q Consensus 213 kL~~~~e~qk~eL~~~e~~i~eLe~ 237 (943)
++..+.+.|+.+..++...+..+..
T Consensus 26 ~l~~eN~~Lk~e~e~l~~~~~~~~~ 50 (155)
T 2oto_A 26 RLRHENKDLKARLENAMEVAGRDFK 50 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455555444444444333
No 348
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=23.94 E-value=28 Score=42.43 Aligned_cols=73 Identities=21% Similarity=0.325 Sum_probs=41.6
Q ss_pred eeecceeeCCCCCcccccccch-hhHH-HhhC----CcceEEEeeCcccCccccccccC-----------------CCCC
Q 002276 408 TFKFDAVFGPQADQVDVFQDTA-PFAN-SVLD----GYNVCIFAYGQTGTGKTFTMEGT-----------------KEAR 464 (943)
Q Consensus 408 tF~FD~VF~~~asQeeVFeev~-pLV~-svLd----GyNvcIFAYGQTGSGKTyTM~G~-----------------~e~~ 464 (943)
.++||.|.+.+..-..+.+.+. |+.. .++. ....+|+-||++|||||+.+..- ....
T Consensus 200 ~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~~ 279 (806)
T 1ypw_A 200 EVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA 279 (806)
T ss_dssp SCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSST
T ss_pred CCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhhh
Confidence 4778888775544344433332 2221 1222 12346888999999999876320 1224
Q ss_pred CccHHhHHHHHHHHHh
Q 002276 465 GVNFRTLEELFRIIKE 480 (943)
Q Consensus 465 GIIPRal~~LF~~i~~ 480 (943)
|-....+..+|+....
T Consensus 280 g~~~~~l~~vf~~a~~ 295 (806)
T 1ypw_A 280 GESESNLRKAFEEAEK 295 (806)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHh
Confidence 5556667777876654
No 349
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=23.86 E-value=21 Score=39.58 Aligned_cols=16 Identities=38% Similarity=0.609 Sum_probs=13.8
Q ss_pred EEEeeCcccCcccccc
Q 002276 442 CIFAYGQTGTGKTFTM 457 (943)
Q Consensus 442 cIFAYGQTGSGKTyTM 457 (943)
+|.-.|++|||||.|+
T Consensus 159 vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCChHHHHH
Confidence 5667799999999997
No 350
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=23.84 E-value=23 Score=34.76 Aligned_cols=16 Identities=44% Similarity=0.470 Sum_probs=13.8
Q ss_pred EEEeeCcccCcccccc
Q 002276 442 CIFAYGQTGTGKTFTM 457 (943)
Q Consensus 442 cIFAYGQTGSGKTyTM 457 (943)
.|+-.|.+|||||+..
T Consensus 27 ~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLG 42 (199)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5778899999999874
No 351
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=23.80 E-value=26 Score=42.04 Aligned_cols=29 Identities=21% Similarity=0.169 Sum_probs=21.1
Q ss_pred hhHHHhhCCcceEEEeeCcccCccccccc
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTFTME 458 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTyTM~ 458 (943)
.++..+..+....|+-||.+|+|||....
T Consensus 191 ~l~~~l~~~~~~~vLL~G~pGtGKT~la~ 219 (758)
T 3pxi_A 191 RVIEVLSRRTKNNPVLIGEPGVGKTAIAE 219 (758)
T ss_dssp HHHHHHHCSSSCEEEEESCTTTTTHHHHH
T ss_pred HHHHHHhCCCCCCeEEECCCCCCHHHHHH
Confidence 34444445555668889999999998864
No 352
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=23.76 E-value=8.9e+02 Score=27.96 Aligned_cols=29 Identities=14% Similarity=0.156 Sum_probs=0.0
Q ss_pred CCCcccccccchhhHHHhhCCcceEEEeeC
Q 002276 418 QADQVDVFQDTAPFANSVLDGYNVCIFAYG 447 (943)
Q Consensus 418 ~asQeeVFeev~pLV~svLdGyNvcIFAYG 447 (943)
.+.+...|.++.+ +.-+|++-..-.-+||
T Consensus 227 ~~~~w~al~dm~Q-m~mvLE~~~~ds~~~~ 255 (491)
T 1m1j_A 227 EMQAMSAFNNIKQ-MQVVLERPETDHVAEA 255 (491)
T ss_dssp ------------------------------
T ss_pred cccchhHHhhhhh-eEEEEecCCCCCCCcC
Confidence 3333444544432 2334555544445554
No 353
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=23.67 E-value=3.2e+02 Score=24.19 Aligned_cols=15 Identities=20% Similarity=0.208 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHHH
Q 002276 291 LTRRLKIMKMEHINL 305 (943)
Q Consensus 291 L~~~l~~~k~e~~~l 305 (943)
|-.++..+-.++..+
T Consensus 35 LI~rvdELt~E~e~l 49 (77)
T 2w83_C 35 LIAKVDELTCEKDVL 49 (77)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHH
Confidence 333443333333333
No 354
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=23.64 E-value=18 Score=36.48 Aligned_cols=18 Identities=17% Similarity=0.098 Sum_probs=14.8
Q ss_pred EEEeeCcccCcccccccc
Q 002276 442 CIFAYGQTGTGKTFTMEG 459 (943)
Q Consensus 442 cIFAYGQTGSGKTyTM~G 459 (943)
.+|-||..|||||..+.+
T Consensus 10 i~v~~G~mgsGKTT~ll~ 27 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIR 27 (191)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHH
Confidence 567799999999988643
No 355
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=23.58 E-value=24 Score=33.55 Aligned_cols=17 Identities=24% Similarity=0.366 Sum_probs=14.1
Q ss_pred eEEEeeCcccCcccccc
Q 002276 441 VCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 441 vcIFAYGQTGSGKTyTM 457 (943)
..|+-.|..|||||+..
T Consensus 4 ~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35788999999999864
No 356
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=23.56 E-value=20 Score=42.43 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=18.3
Q ss_pred hHHHhhCCcceEEEeeCcccCcccccc
Q 002276 431 FANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 431 LV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
.+..+++|.| ++..|+||||||...
T Consensus 33 ~i~~i~~~~~--~lv~apTGsGKT~~~ 57 (702)
T 2p6r_A 33 AVEKVFSGKN--LLLAMPTAAGKTLLA 57 (702)
T ss_dssp HHHHHTTCSC--EEEECSSHHHHHHHH
T ss_pred HHHHHhCCCc--EEEEcCCccHHHHHH
Confidence 3444567766 467789999999875
No 357
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=23.38 E-value=8.5e+02 Score=27.60 Aligned_cols=15 Identities=7% Similarity=0.120 Sum_probs=7.0
Q ss_pred cCcchhHHHHHHHHH
Q 002276 205 RGVKGDYERLKMSYE 219 (943)
Q Consensus 205 ~~~~~e~~kL~~~~e 219 (943)
+||+.-..+.+..+.
T Consensus 23 Cgl~d~L~kye~~V~ 37 (411)
T 3ghg_C 23 CGIADFLSTYQTKVD 37 (411)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred chHHHHHHHhccchh
Confidence 445554444444443
No 358
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=23.38 E-value=21 Score=42.80 Aligned_cols=47 Identities=23% Similarity=0.293 Sum_probs=27.6
Q ss_pred HHhhCCcceEEEeeCcccCccccccccC--CCCCCcc--HH--hHHHHHHHHHhh
Q 002276 433 NSVLDGYNVCIFAYGQTGTGKTFTMEGT--KEARGVN--FR--TLEELFRIIKER 481 (943)
Q Consensus 433 ~svLdGyNvcIFAYGQTGSGKTyTM~G~--~e~~GII--PR--al~~LF~~i~~~ 481 (943)
...++|. .|+..|+||||||+.+.-. ....|++ |+ .+.++|+.+...
T Consensus 150 ar~l~rk--~vlv~apTGSGKT~~al~~l~~~~~gl~l~PtR~LA~Qi~~~l~~~ 202 (677)
T 3rc3_A 150 ARAMQRK--IIFHSGPTNSGKTYHAIQKYFSAKSGVYCGPLKLLAHEIFEKSNAA 202 (677)
T ss_dssp HHTSCCE--EEEEECCTTSSHHHHHHHHHHHSSSEEEEESSHHHHHHHHHHHHHT
T ss_pred HHhcCCC--EEEEEcCCCCCHHHHHHHHHHhcCCeEEEeCHHHHHHHHHHHHHhc
Confidence 3456665 4688899999999853211 1123443 32 446677766553
No 359
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=23.31 E-value=4.1e+02 Score=23.85 Aligned_cols=10 Identities=20% Similarity=0.454 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 002276 286 SSLRDLTRRL 295 (943)
Q Consensus 286 ~~L~~L~~~l 295 (943)
..+..++..+
T Consensus 31 ~~i~~l~~~l 40 (112)
T 1l8d_A 31 NKIGDLKTAI 40 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 360
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=23.18 E-value=22 Score=38.38 Aligned_cols=17 Identities=41% Similarity=0.591 Sum_probs=14.2
Q ss_pred eEEEeeCcccCcccccc
Q 002276 441 VCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 441 vcIFAYGQTGSGKTyTM 457 (943)
..|+-.|++|||||+|+
T Consensus 105 ~vi~ivG~~GsGKTTl~ 121 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSC 121 (306)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 35667799999999997
No 361
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=23.07 E-value=31 Score=43.39 Aligned_cols=24 Identities=33% Similarity=0.365 Sum_probs=18.8
Q ss_pred hhHHHhhCCcceEEEeeCcccCcccc
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTF 455 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTy 455 (943)
..+..+++|.| +++.++||||||.
T Consensus 63 ~ai~~il~g~d--vlv~apTGSGKTl 86 (1054)
T 1gku_B 63 MWAKRILRKES--FAATAPTGVGKTS 86 (1054)
T ss_dssp HHHHHHHTTCC--EECCCCBTSCSHH
T ss_pred HHHHHHHhCCC--EEEEcCCCCCHHH
Confidence 35667788876 5677899999994
No 362
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=23.01 E-value=25 Score=36.70 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=17.1
Q ss_pred hCCcceEEEeeCcccCcccccc
Q 002276 436 LDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 436 LdGyNvcIFAYGQTGSGKTyTM 457 (943)
+.. ..++-||+.|+|||..+
T Consensus 28 l~~--~~v~i~G~~G~GKT~L~ 47 (357)
T 2fna_A 28 LRA--PITLVLGLRRTGKSSII 47 (357)
T ss_dssp TCS--SEEEEEESTTSSHHHHH
T ss_pred hcC--CcEEEECCCCCCHHHHH
Confidence 554 58899999999999886
No 363
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=22.89 E-value=24 Score=36.71 Aligned_cols=17 Identities=18% Similarity=0.206 Sum_probs=15.3
Q ss_pred eEEEeeCcccCcccccc
Q 002276 441 VCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 441 vcIFAYGQTGSGKTyTM 457 (943)
..++-||+.|+|||..+
T Consensus 32 ~~v~i~G~~G~GKT~Ll 48 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLL 48 (350)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcCCHHHHH
Confidence 67888999999999886
No 364
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=22.75 E-value=4.5e+02 Score=24.88 Aligned_cols=37 Identities=32% Similarity=0.296 Sum_probs=15.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 209 GDYERLKMSYECQKKELTEAKRTLEELKRENQLKNKEYQE 248 (943)
Q Consensus 209 ~e~~kL~~~~e~qk~eL~~~e~~i~eLe~en~~K~~E~~e 248 (943)
-|.++|+..-+...+--++ +...|+.+++.+.+++..
T Consensus 39 ~ELeRLr~~~d~~~K~HE~---kklqLkse~e~E~ae~k~ 75 (115)
T 3vem_A 39 HELEKLRRESENSKKTFEE---KKSILKAELERKMAEVQA 75 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 3444444444443332222 233444444444444433
No 365
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=22.72 E-value=1.3e+02 Score=25.53 Aligned_cols=32 Identities=22% Similarity=0.341 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 208 KGDYERLKMSYECQKKELTEAKRTLEELKREN 239 (943)
Q Consensus 208 ~~e~~kL~~~~e~qk~eL~~~e~~i~eLe~en 239 (943)
+-+++.|.+....+..||.-|+++|..|+.||
T Consensus 26 eAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen 57 (63)
T 2w6a_A 26 EAKVQQLMKVNSSLSDELRKLQREIHKLQAEN 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhh
No 366
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=22.71 E-value=4.4e+02 Score=26.96 Aligned_cols=12 Identities=17% Similarity=-0.072 Sum_probs=7.8
Q ss_pred HhhcCCEEEEEEeCCCC
Q 002276 359 LELKGNIRVFCRCRPLN 375 (943)
Q Consensus 359 qELKGNIRV~~RVRPl~ 375 (943)
..|.| +|||-.-
T Consensus 79 e~LTG-----l~V~~~~ 90 (190)
T 4emc_A 79 EYLCN-----VRVHKSY 90 (190)
T ss_dssp HHHHS-----EECCCCC
T ss_pred HHccC-----cEEEEEE
Confidence 35667 6777764
No 367
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=22.54 E-value=21 Score=36.04 Aligned_cols=15 Identities=27% Similarity=0.530 Sum_probs=12.2
Q ss_pred EEeeCcccCcccccc
Q 002276 443 IFAYGQTGTGKTFTM 457 (943)
Q Consensus 443 IFAYGQTGSGKTyTM 457 (943)
+.-.|++|||||..+
T Consensus 26 ~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 26 LVICGPSGVGKGTLI 40 (218)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 344699999999886
No 368
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=22.27 E-value=25 Score=41.49 Aligned_cols=19 Identities=21% Similarity=0.261 Sum_probs=16.5
Q ss_pred ceEEEeeCcccCccccccc
Q 002276 440 NVCIFAYGQTGTGKTFTME 458 (943)
Q Consensus 440 NvcIFAYGQTGSGKTyTM~ 458 (943)
+..++..|..|||||+|+.
T Consensus 15 ~~~~lV~AgaGSGKT~~l~ 33 (673)
T 1uaa_A 15 TGPCLVLAGAGSGKTRVIT 33 (673)
T ss_dssp SSEEEECCCTTSCHHHHHH
T ss_pred CCCEEEEeCCCCChHHHHH
Confidence 5667888999999999985
No 369
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=22.27 E-value=2.4e+02 Score=28.33 Aligned_cols=28 Identities=18% Similarity=0.077 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhHHHhh
Q 002276 331 NHQVQLYEHLKIKFIEGTKERKELYNKVLEL 361 (943)
Q Consensus 331 ~~~~~~~e~l~~kl~~e~~~RrkLhN~lqEL 361 (943)
..+.+.+.++..++. .+|-++++++.+.
T Consensus 116 ~aL~~Ei~~Lr~qL~---~~R~k~~~em~Ke 143 (175)
T 3lay_A 116 NAVAKEMESLGQKLD---EQRVKRDVAMAQA 143 (175)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHh
Confidence 333334444444443 5777788888766
No 370
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=22.25 E-value=32 Score=33.69 Aligned_cols=18 Identities=28% Similarity=0.517 Sum_probs=14.3
Q ss_pred ceEEEeeCcccCcccccc
Q 002276 440 NVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 440 NvcIFAYGQTGSGKTyTM 457 (943)
...|+-.|.+|||||+.+
T Consensus 25 g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CEEEEEECSTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 345667799999999875
No 371
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=22.24 E-value=4.1e+02 Score=23.51 Aligned_cols=31 Identities=13% Similarity=0.038 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhHHH
Q 002276 329 KINHQVQLYEHLKIKFIEGTKERKELYNKVL 359 (943)
Q Consensus 329 ~i~~~~~~~e~l~~kl~~e~~~RrkLhN~lq 359 (943)
++.++....+.++.++..-...|-++.-++.
T Consensus 38 rvdELt~E~e~l~~El~s~~~~~~r~~~ri~ 68 (77)
T 2w83_C 38 KVDELTCEKDVLQGELEAVKQAKLKLEEKNR 68 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333
No 372
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=22.11 E-value=27 Score=42.94 Aligned_cols=74 Identities=20% Similarity=0.365 Sum_probs=45.3
Q ss_pred eeecceeeCCCCCcccccccch-hhH-HHhhCCcc----eEEEeeCcccCccccccc------cC-----------CCCC
Q 002276 408 TFKFDAVFGPQADQVDVFQDTA-PFA-NSVLDGYN----VCIFAYGQTGTGKTFTME------GT-----------KEAR 464 (943)
Q Consensus 408 tF~FD~VF~~~asQeeVFeev~-pLV-~svLdGyN----vcIFAYGQTGSGKTyTM~------G~-----------~e~~ 464 (943)
..+||.|-+-+..-.++.+.+. ||. ..++.++. ..|+-||+.|+|||...- |- ....
T Consensus 200 ~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~ 279 (806)
T 3cf2_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA 279 (806)
T ss_dssp SCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCT
T ss_pred CCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccc
Confidence 3567777765554444444333 443 23555554 369999999999997642 11 1235
Q ss_pred CccHHhHHHHHHHHHhh
Q 002276 465 GVNFRTLEELFRIIKER 481 (943)
Q Consensus 465 GIIPRal~~LF~~i~~~ 481 (943)
|-....++.+|......
T Consensus 280 gese~~lr~lF~~A~~~ 296 (806)
T 3cf2_A 280 GESESNLRKAFEEAEKN 296 (806)
T ss_dssp THHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHHHc
Confidence 66677788888876543
No 373
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=21.99 E-value=26 Score=36.24 Aligned_cols=15 Identities=40% Similarity=0.465 Sum_probs=12.7
Q ss_pred EEEeeCcccCccccc
Q 002276 442 CIFAYGQTGTGKTFT 456 (943)
Q Consensus 442 cIFAYGQTGSGKTyT 456 (943)
.|+-.|.+|||||..
T Consensus 3 li~I~G~~GSGKSTl 17 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDM 17 (253)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 467789999999975
No 374
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=21.98 E-value=1.5e+02 Score=27.61 Aligned_cols=14 Identities=29% Similarity=0.399 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 002276 702 IKSLQDKVKELETQ 715 (943)
Q Consensus 702 i~~LqekikeLE~q 715 (943)
++.|.+.|..||.+
T Consensus 51 ~keLh~~I~~LEeE 64 (106)
T 1j1d_B 51 AKELWQTIYNLEAE 64 (106)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 34444444444443
No 375
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=21.97 E-value=23 Score=36.74 Aligned_cols=21 Identities=24% Similarity=0.659 Sum_probs=17.4
Q ss_pred CCcceEEEeeCcccCcccccc
Q 002276 437 DGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 437 dGyNvcIFAYGQTGSGKTyTM 457 (943)
.|++..|...|.+|+|||..+
T Consensus 5 ~g~~~~I~vvG~~g~GKSTLi 25 (274)
T 3t5d_A 5 SGFEFTLMVVGESGLGKSTLI 25 (274)
T ss_dssp --CEEEEEEEECTTSSHHHHH
T ss_pred CccEEEEEEECCCCCCHHHHH
Confidence 588999999999999999765
No 376
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=21.92 E-value=3.8e+02 Score=23.34 Aligned_cols=40 Identities=23% Similarity=0.291 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 214 LKMSYECQKKELTEAKRTLEELKRENQLKNKEYQETWKSL 253 (943)
Q Consensus 214 L~~~~e~qk~eL~~~e~~i~eLe~en~~K~~E~~e~~~~l 253 (943)
|..+.+.....+..++..+..++.++..-..||++.+..-
T Consensus 3 l~~e~~~~~~~i~~lE~eL~~~r~e~~~ql~EYq~LlniK 42 (74)
T 2xv5_A 3 SARERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIK 42 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666677777766667776555443
No 377
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=21.89 E-value=25 Score=33.38 Aligned_cols=17 Identities=24% Similarity=0.352 Sum_probs=13.9
Q ss_pred eEEEeeCcccCcccccc
Q 002276 441 VCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 441 vcIFAYGQTGSGKTyTM 457 (943)
..|+-.|..|||||+.+
T Consensus 9 ~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp EEEEEECSTTSCHHHHH
T ss_pred cEEEEEcCCCCCHHHHH
Confidence 35677899999999875
No 378
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=21.88 E-value=29 Score=42.44 Aligned_cols=26 Identities=35% Similarity=0.377 Sum_probs=18.9
Q ss_pred hHHHhhCCcceEEEeeCcccCccccccc
Q 002276 431 FANSVLDGYNVCIFAYGQTGTGKTFTME 458 (943)
Q Consensus 431 LV~svLdGyNvcIFAYGQTGSGKTyTM~ 458 (943)
.|..++.+ ..++..|+.|||||+|+.
T Consensus 368 Av~~~l~~--~~~lI~GppGTGKT~~i~ 393 (802)
T 2xzl_A 368 AVSHVLQR--PLSLIQGPPGTGKTVTSA 393 (802)
T ss_dssp HHHHHTTC--SEEEEECSTTSSHHHHHH
T ss_pred HHHHHhcC--CCEEEECCCCCCHHHHHH
Confidence 45555543 345679999999999974
No 379
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=21.75 E-value=27 Score=33.24 Aligned_cols=15 Identities=33% Similarity=0.569 Sum_probs=12.6
Q ss_pred EEeeCcccCcccccc
Q 002276 443 IFAYGQTGTGKTFTM 457 (943)
Q Consensus 443 IFAYGQTGSGKTyTM 457 (943)
..-||++|||||..|
T Consensus 26 ~~I~G~NGsGKStil 40 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 457899999999875
No 380
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=21.72 E-value=28 Score=33.57 Aligned_cols=21 Identities=24% Similarity=0.268 Sum_probs=16.0
Q ss_pred CCcceEEEeeCcccCcccccc
Q 002276 437 DGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 437 dGyNvcIFAYGQTGSGKTyTM 457 (943)
++....|.-.|.+|||||+..
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVA 25 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHH
T ss_pred ccCceEEEEECCCCCCHHHHH
Confidence 344567888899999999864
No 381
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=21.67 E-value=29 Score=42.38 Aligned_cols=26 Identities=35% Similarity=0.397 Sum_probs=18.9
Q ss_pred hHHHhhCCcceEEEeeCcccCccccccc
Q 002276 431 FANSVLDGYNVCIFAYGQTGTGKTFTME 458 (943)
Q Consensus 431 LV~svLdGyNvcIFAYGQTGSGKTyTM~ 458 (943)
.|..++.+ ..++..|+.|||||+|+.
T Consensus 364 Av~~~l~~--~~~lI~GppGTGKT~ti~ 389 (800)
T 2wjy_A 364 AVKTVLQR--PLSLIQGPPGTGKTVTSA 389 (800)
T ss_dssp HHHHHHTS--SEEEEECCTTSCHHHHHH
T ss_pred HHHHhccC--CeEEEEcCCCCCHHHHHH
Confidence 45555543 345779999999999974
No 382
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=21.61 E-value=25 Score=33.11 Aligned_cols=16 Identities=38% Similarity=0.519 Sum_probs=13.5
Q ss_pred EEEeeCcccCcccccc
Q 002276 442 CIFAYGQTGTGKTFTM 457 (943)
Q Consensus 442 cIFAYGQTGSGKTyTM 457 (943)
.|+-.|..|||||+..
T Consensus 6 ~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4777899999999864
No 383
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=21.55 E-value=29 Score=44.01 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=20.1
Q ss_pred hhHHHhhCCcceEEEeeCcccCcccccc
Q 002276 430 PFANSVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 430 pLV~svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
..+..++.|.+ ++..|+||||||...
T Consensus 191 ~AI~~i~~g~d--vLV~ApTGSGKTlva 216 (1108)
T 3l9o_A 191 TAISCIDRGES--VLVSAHTSAGKTVVA 216 (1108)
T ss_dssp HHHHHHTTTCC--EEEECCSSSHHHHHH
T ss_pred HHHHHHHcCCC--EEEECCCCCChHHHH
Confidence 45666788876 478899999999763
No 384
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=21.52 E-value=28 Score=32.48 Aligned_cols=16 Identities=19% Similarity=0.005 Sum_probs=13.4
Q ss_pred EEEeeCcccCcccccc
Q 002276 442 CIFAYGQTGTGKTFTM 457 (943)
Q Consensus 442 cIFAYGQTGSGKTyTM 457 (943)
.|+-.|..|||||+..
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677899999999864
No 385
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=21.51 E-value=1.8e+02 Score=27.12 Aligned_cols=14 Identities=36% Similarity=0.392 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q 002276 702 IKSLQDKVKELETQ 715 (943)
Q Consensus 702 i~~LqekikeLE~q 715 (943)
++.|.++|..||.+
T Consensus 51 ~keLh~~I~~lEeE 64 (107)
T 1ytz_T 51 AKELWDWLYQLQTE 64 (107)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444443
No 386
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=21.42 E-value=4.4e+02 Score=23.59 Aligned_cols=33 Identities=15% Similarity=0.164 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 217 SYECQKKELTEAKRTLEELKRENQLKNKEYQET 249 (943)
Q Consensus 217 ~~e~qk~eL~~~e~~i~eLe~en~~K~~E~~e~ 249 (943)
+.+.+..++..++.++..+..+...+..+..+.
T Consensus 7 e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~ 39 (117)
T 2zqm_A 7 QVQAMLGQLESYQQQLQLVVQQKQKVQLELTEA 39 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666666666555544444433
No 387
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=21.16 E-value=5.1e+02 Score=24.19 Aligned_cols=62 Identities=21% Similarity=0.299 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH----H-HHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 002276 657 TSELLRYKQMVEKTKQELKSRDVQSKRMEDTIHG----L-DLKLKDKDLKIKSLQDKVKELETQLLV 718 (943)
Q Consensus 657 ~~el~rlk~~ie~LK~eL~~~~~q~~~lE~~i~~----l-~~kl~e~d~~i~~LqekikeLE~qL~~ 718 (943)
...+.+++.++.....+|-.....++..+..... . ...+..+......+++|+.+|+.+|..
T Consensus 34 M~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLAd 100 (107)
T 2k48_A 34 MSTLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDDVNKSTLQNRRAAVSTLETKLGELKRQLAD 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666655555554443333333222210 0 123445566677888888888877743
No 388
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=21.10 E-value=3.4e+02 Score=24.00 Aligned_cols=25 Identities=12% Similarity=0.116 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 217 SYECQKKELTEAKRTLEELKRENQL 241 (943)
Q Consensus 217 ~~e~qk~eL~~~e~~i~eLe~en~~ 241 (943)
+++.++.+...++..+.+++.....
T Consensus 4 eie~L~~q~~~Le~~l~e~E~~~~~ 28 (86)
T 1x8y_A 4 QLSQLQCQLAAKEAKLRDLEDSLAR 28 (86)
T ss_dssp --------CTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555566666666554433
No 389
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=21.01 E-value=5e+02 Score=24.00 Aligned_cols=29 Identities=17% Similarity=0.104 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 002276 287 SLRDLTRRLKIMKMEHINLFEEALAYKKC 315 (943)
Q Consensus 287 ~L~~L~~~l~~~k~e~~~l~~e~~~~~~~ 315 (943)
.+..|+.+++.++.|...|.++...+.-.
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~ 41 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQ 41 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555544433
No 390
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain alpha-II spectrin, fordrin alpha chain, sptan1, SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Probab=20.98 E-value=6e+02 Score=24.93 Aligned_cols=16 Identities=13% Similarity=0.123 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 002276 240 QLKNKEYQETWKSLQE 255 (943)
Q Consensus 240 ~~K~~E~~e~~~~l~~ 255 (943)
+.++.+++..|..+..
T Consensus 91 ~~~l~~L~~~w~~L~~ 106 (218)
T 3fb2_A 91 KQKLDILDQERADLEK 106 (218)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555555555543
No 391
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=20.89 E-value=29 Score=33.02 Aligned_cols=16 Identities=31% Similarity=0.598 Sum_probs=13.6
Q ss_pred EEEeeCcccCcccccc
Q 002276 442 CIFAYGQTGTGKTFTM 457 (943)
Q Consensus 442 cIFAYGQTGSGKTyTM 457 (943)
.|+-.|..|||||+..
T Consensus 5 ~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQC 20 (196)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788899999999863
No 392
>2y3a_B Phosphatidylinositol 3-kinase regulatory subunit; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}
Probab=20.87 E-value=1.7e+02 Score=31.76 Aligned_cols=112 Identities=17% Similarity=0.184 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 002276 225 LTEAKRTLEELKRENQLKNKEYQETWKSLQELQNELMRKSMHVGSLAFAIEGQVKEKSRWFSSLRDLTRRLKIMKMEHIN 304 (943)
Q Consensus 225 L~~~e~~i~eLe~en~~K~~E~~e~~~~l~~~q~el~~~~~~v~sL~~~ie~~~~ek~kl~~~L~~L~~~l~~~k~e~~~ 304 (943)
++.+-.++.++..+-..|+++++..........+++.-+...+..+.+++.- -.++..
T Consensus 13 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~af~~~~~~----------------------f~~q~~ 70 (302)
T 2y3a_B 13 VEAVGAQLKVYHQQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIKI----------------------FEEQGQ 70 (302)
T ss_dssp --------CCCSSCCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHH
Q ss_pred HHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HhHH
Q 002276 305 LFEE----------ALAYKKCAAEISEASSTIQSKINHQVQLYEHLKIKFIEGTKERKEL---YNKV 358 (943)
Q Consensus 305 l~~e----------~~~~~~~~~~i~~~~~~lq~~i~~~~~~~e~l~~kl~~e~~~RrkL---hN~l 358 (943)
+.+. .++-......+.+-...+++++..+......+.+.+.-.....+.+ +|.+
T Consensus 71 ~qe~~~~~~~~~~~~~~~~~e~~~~~~n~e~l~~rl~aL~~~~~~~~~eLsf~kgd~~~ier~ln~~ 137 (302)
T 2y3a_B 71 TQEKCSKEYLERFRREGNEKEMQRILLNSERLKSRIAEIHESRTKLEQDLRAQASDNREIDKRMNSL 137 (302)
T ss_dssp HHHHHHTCCC------CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhhhhcchhhhhhhhhHHHhHHhhhccC
No 393
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=20.66 E-value=35 Score=41.03 Aligned_cols=17 Identities=24% Similarity=0.333 Sum_probs=14.0
Q ss_pred EEEeeCcccCccccccc
Q 002276 442 CIFAYGQTGTGKTFTME 458 (943)
Q Consensus 442 cIFAYGQTGSGKTyTM~ 458 (943)
.++..|+||||||+.+.
T Consensus 234 ~vlv~ApTGSGKT~a~~ 250 (666)
T 3o8b_A 234 VAHLHAPTGSGKSTKVP 250 (666)
T ss_dssp EEEEECCTTSCTTTHHH
T ss_pred eEEEEeCCchhHHHHHH
Confidence 46788999999997764
No 394
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=20.64 E-value=31 Score=41.08 Aligned_cols=84 Identities=24% Similarity=0.297 Sum_probs=50.0
Q ss_pred eeecceeeCCCCCcccccccchhhHHHhhCCcceEEEeeCcccCccccccccCC---CCCCcc----HHhHHHHHHHHHh
Q 002276 408 TFKFDAVFGPQADQVDVFQDTAPFANSVLDGYNVCIFAYGQTGTGKTFTMEGTK---EARGVN----FRTLEELFRIIKE 480 (943)
Q Consensus 408 tF~FD~VF~~~asQeeVFeev~pLV~svLdGyNvcIFAYGQTGSGKTyTM~G~~---e~~GII----PRal~~LF~~i~~ 480 (943)
.|..-.-|.|...|..-++. ++..+-.|... ....|-|||||||||..-- ..+-|| .....+|+..+..
T Consensus 4 ~~~~~~~~~p~~~Q~~~i~~---l~~~~~~~~~~-~~l~g~~gs~k~~~~a~~~~~~~~~~lvv~~~~~~A~~l~~el~~ 79 (661)
T 2d7d_A 4 RFELVSKYQPQGDQPKAIEK---LVKGIQEGKKH-QTLLGATGTGKTFTVSNLIKEVNKPTLVIAHNKTLAGQLYSEFKE 79 (661)
T ss_dssp CCCCCCSCCCCTTHHHHHHH---HHHHHHTTCSE-EEEEECTTSCHHHHHHHHHHHHCCCEEEECSSHHHHHHHHHHHHH
T ss_pred cceeecCCCCCCCCHHHHHH---HHHHHhcCCCc-EEEECcCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHH
Confidence 46666778888888776554 46666667532 3456999999999996421 122222 2345566666665
Q ss_pred hcccceeEEEEEEEE
Q 002276 481 REKLYRYDISVSVLE 495 (943)
Q Consensus 481 ~~~~~~y~V~VSflE 495 (943)
--......+..||+-
T Consensus 80 ~~~~~~v~~fps~yd 94 (661)
T 2d7d_A 80 FFPNNAVEYFVSYYD 94 (661)
T ss_dssp HCTTSEEEEECCCEE
T ss_pred HcCCCcEEEcccccc
Confidence 422224445556533
No 395
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=20.45 E-value=27 Score=35.40 Aligned_cols=17 Identities=24% Similarity=0.360 Sum_probs=14.4
Q ss_pred eEEEeeCcccCcccccc
Q 002276 441 VCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 441 vcIFAYGQTGSGKTyTM 457 (943)
-.|+-.|..|||||+.+
T Consensus 28 ~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46778899999999876
No 396
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=20.40 E-value=5.2e+02 Score=29.88 Aligned_cols=6 Identities=17% Similarity=0.091 Sum_probs=3.8
Q ss_pred CCCCCc
Q 002276 595 GSSRKN 600 (943)
Q Consensus 595 ~sPyRd 600 (943)
+.|||=
T Consensus 366 gLpyrv 371 (501)
T 1wle_A 366 GLHFRV 371 (501)
T ss_dssp TCCEEE
T ss_pred CCcEEE
Confidence 467763
No 397
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=20.40 E-value=27 Score=40.33 Aligned_cols=26 Identities=23% Similarity=0.416 Sum_probs=18.7
Q ss_pred hHHHhhCCcceEEEeeCcccCccccccc
Q 002276 431 FANSVLDGYNVCIFAYGQTGTGKTFTME 458 (943)
Q Consensus 431 LV~svLdGyNvcIFAYGQTGSGKTyTM~ 458 (943)
++..++.|. -|+-||++|+|||+...
T Consensus 34 l~~al~~~~--~VLL~GpPGtGKT~LAr 59 (500)
T 3nbx_X 34 CLLAALSGE--SVFLLGPPGIAKSLIAR 59 (500)
T ss_dssp HHHHHHHTC--EEEEECCSSSSHHHHHH
T ss_pred HHHHHhcCC--eeEeecCchHHHHHHHH
Confidence 344455554 46779999999999863
No 398
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=20.28 E-value=26 Score=35.42 Aligned_cols=15 Identities=40% Similarity=0.705 Sum_probs=13.1
Q ss_pred EEeeCcccCcccccc
Q 002276 443 IFAYGQTGTGKTFTM 457 (943)
Q Consensus 443 IFAYGQTGSGKTyTM 457 (943)
++-+|..|||||+.+
T Consensus 8 ~l~tG~pGsGKT~~a 22 (199)
T 2r2a_A 8 CLITGTPGSGKTLKM 22 (199)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEEeCCCCCHHHHH
Confidence 567899999999986
No 399
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=20.14 E-value=6.4e+02 Score=24.92 Aligned_cols=7 Identities=57% Similarity=0.838 Sum_probs=3.3
Q ss_pred HHHHHHH
Q 002276 304 NLFEEAL 310 (943)
Q Consensus 304 ~l~~e~~ 310 (943)
.|++++.
T Consensus 94 sLFeEAN 100 (154)
T 2ocy_A 94 SLFDEAN 100 (154)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4445444
No 400
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=20.09 E-value=27 Score=38.21 Aligned_cols=24 Identities=29% Similarity=0.625 Sum_probs=21.1
Q ss_pred HhhCCcceEEEeeCcccCcccccc
Q 002276 434 SVLDGYNVCIFAYGQTGTGKTFTM 457 (943)
Q Consensus 434 svLdGyNvcIFAYGQTGSGKTyTM 457 (943)
.+..|++..|...|.+|+|||..+
T Consensus 31 ~~~~~~~~~I~vvG~~g~GKSTLl 54 (361)
T 2qag_A 31 SVKKGFEFTLMVVGESGLGKSTLI 54 (361)
T ss_dssp HHHHCCEECEEECCCTTSCHHHHH
T ss_pred eecCCCCEEEEEEcCCCCCHHHHH
Confidence 467899999999999999999765
No 401
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=20.01 E-value=7.9e+02 Score=25.93 Aligned_cols=123 Identities=7% Similarity=0.061 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccHHHHHHhhHhhhhhHHHHHH
Q 002276 210 DYERLKMSYECQKKELTEAKRTLEELKRENQLKNKEYQETWKSLQELQNELMRKSMHVGSLAFAIEGQVKEKSRWFSSLR 289 (943)
Q Consensus 210 e~~kL~~~~e~qk~eL~~~e~~i~eLe~en~~K~~E~~e~~~~l~~~q~el~~~~~~v~sL~~~ie~~~~ek~kl~~~L~ 289 (943)
+..++...++...+++......+...+...+.++++++.+.... ...........++..++...+.
T Consensus 128 e~K~~~~~~~k~~k~~~~~~~~l~KaKk~Y~~~c~e~e~a~~~~--------------~~~~~~~~~s~k~~eK~~~k~~ 193 (337)
T 2x3v_A 128 ETKEAEDGFRKAQKPWAKKMKELEAAKKAYHLACKEERLAMTRE--------------MNSKTEQSVTPEQQKKLVDKVD 193 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--------------hccccCcccCHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 002276 290 DLTRRLKIMKMEHINLFEEALAYKK-CAAEISEASSTIQSKINHQVQLYEHLKIKFIE 346 (943)
Q Consensus 290 ~L~~~l~~~k~e~~~l~~e~~~~~~-~~~~i~~~~~~lq~~i~~~~~~~e~l~~kl~~ 346 (943)
.+..++...+.++......+..... ...++......+|..-.+-...+.+.-..|..
T Consensus 194 k~~~~~~~a~~~Y~~~v~~~n~~~~~~~~~~~~~~~~~Q~le~~Rl~~lk~~l~~~~~ 251 (337)
T 2x3v_A 194 KCRQDVQKTQEKYEKVLEDVGKTTPQYMEGMEQVFEQCQQFEEKRLVFLKEVLLDIKR 251 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Done!