Query 002278
Match_columns 943
No_of_seqs 939 out of 6673
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 19:50:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002278.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002278hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 6.8E-75 2.3E-79 713.7 31.8 537 1-544 18-754 (768)
2 3rgz_A Protein brassinosteroid 100.0 3.4E-60 1.2E-64 583.1 30.1 466 39-508 201-743 (768)
3 3t6q_A CD180 antigen; protein- 100.0 5.4E-59 1.9E-63 559.7 33.6 503 28-533 14-564 (606)
4 1ziw_A TOLL-like receptor 3; i 100.0 2.1E-58 7.3E-63 562.1 36.7 508 26-533 4-626 (680)
5 3vq2_A TLR4, TOLL-like recepto 100.0 4.3E-57 1.5E-61 543.2 35.9 496 29-534 14-563 (606)
6 3j0a_A TOLL-like receptor 5; m 100.0 8.4E-57 2.9E-61 558.7 36.0 494 26-534 14-565 (844)
7 4eco_A Uncharacterized protein 100.0 1.6E-57 5.6E-62 546.3 17.3 471 14-509 57-603 (636)
8 3t6q_A CD180 antigen; protein- 100.0 1.6E-54 5.5E-59 520.8 37.6 483 42-529 16-536 (606)
9 4ecn_A Leucine-rich repeat pro 100.0 2.8E-55 9.7E-60 534.3 28.7 450 1-508 275-842 (876)
10 1ziw_A TOLL-like receptor 3; i 100.0 6.6E-54 2.3E-58 522.5 37.5 482 42-526 8-594 (680)
11 3vq2_A TLR4, TOLL-like recepto 100.0 5.7E-53 1.9E-57 507.3 31.0 476 42-529 15-534 (606)
12 2z63_A TOLL-like receptor 4, v 100.0 1.4E-52 4.7E-57 500.4 33.0 467 38-513 28-538 (570)
13 3j0a_A TOLL-like receptor 5; m 100.0 2E-51 6.8E-56 510.4 35.8 474 42-529 8-539 (844)
14 2z63_A TOLL-like receptor 4, v 100.0 9.4E-52 3.2E-56 493.2 30.0 480 43-533 12-535 (570)
15 2z81_A CD282 antigen, TOLL-lik 100.0 4.5E-52 1.6E-56 493.4 27.1 474 25-510 3-514 (549)
16 4aoj_A High affinity nerve gro 100.0 1.8E-51 6.1E-56 448.0 23.5 263 615-892 40-322 (329)
17 4asz_A BDNF/NT-3 growth factor 100.0 9.6E-52 3.3E-56 443.8 19.4 261 615-890 12-290 (299)
18 4fih_A Serine/threonine-protei 100.0 5.5E-51 1.9E-55 442.7 21.4 253 616-886 74-327 (346)
19 4gt4_A Tyrosine-protein kinase 100.0 8.6E-51 2.9E-55 438.3 22.4 258 616-888 26-305 (308)
20 3omv_A RAF proto-oncogene seri 100.0 1E-50 3.5E-55 435.4 21.3 260 615-889 35-300 (307)
21 4aw0_A HPDK1, 3-phosphoinositi 100.0 4.8E-51 1.7E-55 436.4 17.2 249 616-883 32-285 (311)
22 4b9d_A Serine/threonine-protei 100.0 5.6E-51 1.9E-55 443.3 17.4 254 615-885 23-279 (350)
23 2z81_A CD282 antigen, TOLL-lik 100.0 6.1E-51 2.1E-55 483.7 18.9 483 32-533 3-514 (549)
24 4g3f_A NF-kappa-beta-inducing 100.0 2.7E-50 9.3E-55 436.1 20.4 254 615-889 57-316 (336)
25 4fie_A Serine/threonine-protei 100.0 7.4E-50 2.5E-54 444.5 22.7 254 615-886 150-404 (423)
26 3hyh_A Carbon catabolite-derep 100.0 5.1E-50 1.7E-54 422.9 20.1 249 616-886 13-266 (275)
27 3fpq_A Serine/threonine-protei 100.0 1.1E-49 3.8E-54 424.3 22.4 249 619-885 29-285 (290)
28 2z7x_B TOLL-like receptor 1, v 100.0 5.2E-50 1.8E-54 472.1 18.5 449 42-507 4-482 (520)
29 2z7x_B TOLL-like receptor 1, v 100.0 1.5E-49 5.2E-54 468.2 20.6 453 65-533 3-485 (520)
30 4g8a_A TOLL-like receptor 4; l 100.0 3.3E-48 1.1E-52 468.9 32.7 516 9-533 8-584 (635)
31 3ubd_A Ribosomal protein S6 ki 100.0 3.3E-50 1.1E-54 430.3 12.7 250 616-885 24-284 (304)
32 4ase_A Vascular endothelial gr 100.0 5.6E-49 1.9E-53 431.7 20.1 269 607-889 55-347 (353)
33 3hmm_A TGF-beta receptor type- 100.0 1.9E-49 6.4E-54 429.4 15.0 264 616-890 3-298 (303)
34 4ecn_A Leucine-rich repeat pro 100.0 1.4E-48 4.9E-53 475.4 24.0 442 62-530 323-841 (876)
35 4eco_A Uncharacterized protein 100.0 7.7E-49 2.6E-53 471.0 19.0 452 62-532 81-603 (636)
36 4g31_A Eukaryotic translation 100.0 9.7E-48 3.3E-52 413.6 20.0 254 615-885 4-282 (299)
37 4g8a_A TOLL-like receptor 4; l 100.0 6E-46 2.1E-50 449.1 34.3 461 39-508 77-582 (635)
38 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 7.2E-47 2.5E-51 449.1 19.6 450 41-508 34-512 (562)
39 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.5E-46 8.7E-51 444.4 22.6 457 61-534 30-515 (562)
40 4b99_A Mitogen-activated prote 100.0 6.9E-46 2.4E-50 414.5 21.9 264 616-886 54-348 (398)
41 4f9c_A Cell division cycle 7-r 100.0 8.2E-45 2.8E-49 401.7 21.1 261 614-885 19-355 (361)
42 3uto_A Twitchin; kinase, muscl 100.0 1.6E-44 5.6E-49 423.8 24.5 255 615-885 156-413 (573)
43 3v47_A TOLL-like receptor 5B a 100.0 4.2E-43 1.4E-47 406.0 29.3 389 22-462 4-412 (455)
44 3v5w_A G-protein coupled recep 100.0 8.2E-44 2.8E-48 412.8 21.0 249 615-885 188-452 (689)
45 1jl5_A Outer protein YOPM; leu 100.0 6.2E-43 2.1E-47 401.3 24.6 415 39-530 12-430 (454)
46 3v47_A TOLL-like receptor 5B a 100.0 1.3E-42 4.6E-47 401.8 25.4 385 65-514 13-416 (455)
47 3uim_A Brassinosteroid insensi 100.0 1.9E-42 6.5E-47 381.8 23.2 283 604-887 18-309 (326)
48 2qkw_B Protein kinase; three-h 100.0 4.4E-42 1.5E-46 377.9 21.3 278 608-889 31-315 (321)
49 3fxz_A Serine/threonine-protei 100.0 1.1E-41 3.7E-46 369.9 23.9 255 614-886 18-273 (297)
50 3zgw_A Maternal embryonic leuc 100.0 5.4E-42 1.8E-46 378.8 21.6 256 614-888 8-266 (347)
51 3p86_A Serine/threonine-protei 100.0 3.7E-42 1.3E-46 375.5 18.8 265 612-892 33-301 (309)
52 1jl5_A Outer protein YOPM; leu 100.0 1.6E-41 5.6E-46 389.5 24.9 382 39-511 35-434 (454)
53 2yab_A Death-associated protei 100.0 3.4E-41 1.2E-45 374.8 25.3 254 615-885 11-275 (361)
54 4eqm_A Protein kinase; transfe 100.0 3.7E-41 1.3E-45 365.3 24.7 263 615-892 10-278 (294)
55 1o6l_A RAC-beta serine/threoni 100.0 5.4E-41 1.8E-45 369.8 26.2 251 615-885 4-263 (337)
56 2c30_A Serine/threonine-protei 100.0 7.4E-41 2.5E-45 367.5 27.0 266 604-887 23-299 (321)
57 3fe3_A MAP/microtubule affinit 100.0 1.5E-41 5.2E-46 373.2 21.1 252 614-886 13-268 (328)
58 3sxs_A Cytoplasmic tyrosine-pr 100.0 7.5E-41 2.6E-45 358.0 23.8 260 614-891 6-266 (268)
59 2y0a_A Death-associated protei 100.0 1.4E-40 4.8E-45 366.2 23.8 254 615-885 10-274 (326)
60 4hcu_A Tyrosine-protein kinase 100.0 6.6E-41 2.2E-45 358.6 20.6 257 615-889 9-266 (269)
61 2qol_A Ephrin receptor; recept 100.0 6.5E-41 2.2E-45 375.3 21.2 260 615-891 44-311 (373)
62 1tki_A Titin; serine kinase, m 100.0 1.7E-40 5.9E-45 364.2 23.7 256 615-887 4-262 (321)
63 3v8s_A RHO-associated protein 100.0 5.2E-41 1.8E-45 378.7 19.9 262 609-886 62-333 (410)
64 3soa_A Calcium/calmodulin-depe 100.0 1.3E-40 4.5E-45 379.8 23.1 256 614-885 9-270 (444)
65 1kob_A Twitchin; kinase, intra 100.0 3E-40 1E-44 370.5 25.2 255 615-885 50-307 (387)
66 3txo_A PKC-L, NPKC-ETA, protei 100.0 3.7E-41 1.3E-45 373.6 17.6 252 614-885 21-283 (353)
67 2bdw_A Hypothetical protein K1 100.0 1.6E-40 5.5E-45 370.6 22.7 255 614-885 27-287 (362)
68 3kul_A Ephrin type-A receptor 100.0 1.7E-40 5.7E-45 365.4 22.3 261 615-892 48-316 (325)
69 3s95_A LIMK-1, LIM domain kina 100.0 1.2E-40 4.2E-45 364.5 21.0 260 615-889 9-282 (310)
70 1rdq_E PKA C-alpha, CAMP-depen 100.0 3.9E-40 1.3E-44 365.1 25.1 248 615-885 40-296 (350)
71 2nru_A Interleukin-1 receptor- 100.0 7.6E-40 2.6E-44 357.7 27.0 281 602-889 11-306 (307)
72 1ogq_A PGIP-2, polygalacturona 100.0 2.2E-41 7.4E-46 370.0 14.6 283 1-312 12-302 (313)
73 3bz5_A Internalin-J, INLJ; leu 100.0 4.4E-40 1.5E-44 377.9 25.3 360 53-511 33-392 (457)
74 1fot_A TPK1 delta, CAMP-depend 100.0 2.4E-40 8.2E-45 362.0 21.0 248 615-885 5-261 (318)
75 2psq_A Fibroblast growth facto 100.0 2.7E-40 9.2E-45 370.1 21.5 259 615-888 80-363 (370)
76 3tki_A Serine/threonine-protei 100.0 2.8E-40 9.5E-45 363.1 21.0 256 615-886 6-265 (323)
77 3niz_A Rhodanese family protei 100.0 2.7E-40 9.2E-45 361.5 20.7 264 615-885 20-303 (311)
78 3gen_A Tyrosine-protein kinase 100.0 2.8E-40 9.5E-45 356.7 20.3 257 614-888 22-279 (283)
79 1xjd_A Protein kinase C, theta 100.0 8.5E-41 2.9E-45 369.1 16.0 254 612-885 13-272 (345)
80 4fvq_A Tyrosine-protein kinase 100.0 2.1E-40 7.2E-45 358.8 18.8 260 615-897 7-283 (289)
81 1ob3_A PFPK5, cell division co 100.0 3.1E-40 1E-44 357.2 20.0 263 616-885 2-283 (288)
82 2zv2_A Calcium/calmodulin-depe 100.0 1E-39 3.5E-44 355.0 23.9 252 615-885 12-295 (298)
83 3soc_A Activin receptor type-2 100.0 1.5E-40 5.1E-45 365.5 17.4 264 614-888 22-317 (322)
84 1o6v_A Internalin A; bacterial 100.0 2.6E-39 8.8E-44 374.7 28.4 345 61-459 45-389 (466)
85 3f3z_A Calcium/calmodulin-depe 100.0 1E-39 3.6E-44 350.9 23.2 254 614-885 7-264 (277)
86 2i0e_A Protein kinase C-beta I 100.0 4.2E-40 1.4E-44 364.8 20.6 252 614-885 18-279 (353)
87 3lb7_A RAF proto-oncogene seri 100.0 9.3E-40 3.2E-44 356.4 22.7 263 614-891 34-302 (307)
88 4aw2_A Serine/threonine-protei 100.0 1.8E-40 6.1E-45 377.1 17.7 264 608-886 66-342 (437)
89 3c0i_A Peripheral plasma membr 100.0 4.4E-40 1.5E-44 366.0 20.4 257 615-885 23-289 (351)
90 2x4f_A Myosin light chain kina 100.0 5.3E-40 1.8E-44 367.7 21.0 252 618-885 91-345 (373)
91 3cbl_A C-FES, proto-oncogene t 100.0 3.4E-40 1.1E-44 370.7 19.1 258 614-888 112-373 (377)
92 3ork_A Serine/threonine protei 100.0 3.3E-40 1.1E-44 361.1 18.3 258 615-887 11-279 (311)
93 1qcf_A Haematopoetic cell kina 100.0 5.5E-40 1.9E-44 378.2 21.0 261 614-892 186-447 (454)
94 1o6v_A Internalin A; bacterial 100.0 4.4E-39 1.5E-43 372.8 28.3 347 83-483 43-389 (466)
95 1rjb_A FL cytokine receptor; k 100.0 6.5E-40 2.2E-44 364.5 20.5 265 614-892 43-337 (344)
96 3kex_A Receptor tyrosine-prote 100.0 9.4E-40 3.2E-44 359.8 21.4 258 615-891 12-278 (325)
97 2a2a_A Death-associated protei 100.0 1.9E-39 6.7E-44 356.7 23.7 254 615-885 11-275 (321)
98 4dc2_A Protein kinase C IOTA t 100.0 5.6E-40 1.9E-44 368.1 19.6 252 614-885 50-321 (396)
99 3a62_A Ribosomal protein S6 ki 100.0 5.5E-40 1.9E-44 361.5 19.1 251 615-885 16-279 (327)
100 2w4o_A Calcium/calmodulin-depe 100.0 1.2E-39 4.2E-44 361.9 21.8 253 614-885 51-308 (349)
101 3dtc_A Mitogen-activated prote 100.0 2.1E-39 7E-44 347.5 22.6 253 615-886 6-270 (271)
102 3vhe_A Vascular endothelial gr 100.0 6.1E-40 2.1E-44 367.0 19.2 269 606-888 12-354 (359)
103 3hko_A Calcium/calmodulin-depe 100.0 1.5E-39 5.3E-44 361.6 22.3 263 611-885 21-333 (345)
104 3a8x_A Protein kinase C IOTA t 100.0 9.8E-40 3.4E-44 361.4 20.4 251 615-885 8-278 (345)
105 4euu_A Serine/threonine-protei 100.0 4.4E-39 1.5E-43 353.6 25.4 270 615-889 8-309 (319)
106 3h4j_B AMPK kdaid, SNF1-like p 100.0 1.9E-40 6.4E-45 365.0 14.5 251 615-887 8-263 (336)
107 1fmk_A C-SRC, P60-SRC, tyrosin 100.0 1.4E-39 4.6E-44 374.5 21.9 261 614-892 182-443 (452)
108 4fr4_A YANK1, serine/threonine 100.0 1.4E-39 4.7E-44 363.8 21.1 249 615-884 14-273 (384)
109 3t9t_A Tyrosine-protein kinase 100.0 1.2E-39 4.3E-44 348.3 19.7 257 615-889 7-264 (267)
110 2pmi_A Negative RE, cyclin-dep 100.0 1.2E-39 4E-44 357.5 19.9 267 614-885 3-296 (317)
111 3o0g_A Cell division protein k 100.0 2.7E-39 9.4E-44 350.5 22.5 263 616-885 2-285 (292)
112 1luf_A Muscle-specific tyrosin 100.0 1.8E-39 6.3E-44 360.7 21.4 264 614-892 45-338 (343)
113 1mp8_A Focal adhesion kinase 1 100.0 1.4E-39 4.9E-44 350.6 19.9 257 614-888 13-275 (281)
114 3fdn_A Serine/threonine-protei 100.0 1.7E-39 5.7E-44 349.8 20.2 250 614-885 7-260 (279)
115 3q4u_A Activin receptor type-1 100.0 2E-39 7E-44 353.3 21.2 257 615-887 7-300 (301)
116 3qd2_B Eukaryotic translation 100.0 1.3E-39 4.4E-44 360.1 19.7 254 614-884 4-327 (332)
117 3poz_A Epidermal growth factor 100.0 1E-39 3.5E-44 359.7 18.8 258 615-890 14-279 (327)
118 2vd5_A DMPK protein; serine/th 100.0 4.6E-40 1.6E-44 371.1 16.4 263 608-885 53-330 (412)
119 3kk8_A Calcium/calmodulin depe 100.0 5.1E-39 1.7E-43 346.9 23.8 255 615-886 5-265 (284)
120 2y94_A 5'-AMP-activated protei 100.0 2.2E-39 7.5E-44 372.0 22.1 251 615-886 15-270 (476)
121 3qup_A Tyrosine-protein kinase 100.0 1.3E-39 4.4E-44 358.6 19.3 267 613-894 20-303 (323)
122 3ugc_A Tyrosine-protein kinase 100.0 1E-39 3.5E-44 354.5 18.3 263 615-889 9-291 (295)
123 4f0f_A Serine/threonine-protei 100.0 3.7E-39 1.3E-43 348.6 22.4 253 615-887 18-287 (287)
124 4ejn_A RAC-alpha serine/threon 100.0 6.8E-40 2.3E-44 377.0 17.5 252 614-885 146-407 (446)
125 3mtl_A Cell division protein k 100.0 8E-40 2.7E-44 360.1 17.3 264 616-886 2-285 (324)
126 2h34_A Serine/threonine-protei 100.0 4.1E-39 1.4E-43 351.9 22.7 263 614-892 32-299 (309)
127 3l9p_A Anaplastic lymphoma kin 100.0 3.9E-40 1.3E-44 368.6 14.8 262 615-891 70-347 (367)
128 2eue_A Carbon catabolite derep 100.0 1.7E-39 5.9E-44 348.8 19.1 249 615-885 12-265 (275)
129 3tt0_A Basic fibroblast growth 100.0 3.6E-39 1.2E-43 363.2 22.5 262 614-890 67-353 (382)
130 3kn6_A Ribosomal protein S6 ki 100.0 1.7E-39 5.8E-44 357.2 18.9 247 621-886 16-274 (325)
131 3bhy_A Death-associated protei 100.0 7.4E-39 2.5E-43 345.5 23.3 253 615-884 4-267 (283)
132 3ttj_A Mitogen-activated prote 100.0 1.6E-39 5.5E-44 374.0 19.0 260 615-885 61-358 (464)
133 1qpc_A LCK kinase; alpha beta 100.0 4.2E-39 1.4E-43 346.7 20.9 259 614-890 11-270 (279)
134 2jam_A Calcium/calmodulin-depe 100.0 5.8E-39 2E-43 350.1 22.2 255 614-886 7-265 (304)
135 1opk_A P150, C-ABL, proto-onco 100.0 2.3E-39 7.9E-44 376.5 20.0 260 614-890 218-479 (495)
136 2eva_A TAK1 kinase - TAB1 chim 100.0 4.2E-39 1.4E-43 351.4 20.9 257 615-891 7-265 (307)
137 2r5t_A Serine/threonine-protei 100.0 1.4E-39 4.8E-44 363.1 17.5 251 614-884 36-295 (373)
138 2rku_A Serine/threonine-protei 100.0 4.9E-39 1.7E-43 348.9 21.1 253 614-886 13-269 (294)
139 2izr_A Casein kinase I isoform 100.0 1.2E-39 4.2E-44 359.8 16.6 257 615-889 8-281 (330)
140 2ivs_A Proto-oncogene tyrosine 100.0 3.3E-39 1.1E-43 353.9 19.7 261 614-889 21-311 (314)
141 3uc3_A Serine/threonine-protei 100.0 1.9E-39 6.5E-44 361.9 18.1 253 614-886 18-278 (361)
142 4agu_A Cyclin-dependent kinase 100.0 8.2E-39 2.8E-43 350.2 22.7 262 616-885 3-287 (311)
143 3lm5_A Serine/threonine-protei 100.0 1.2E-38 4.2E-43 351.1 24.0 263 608-885 20-290 (327)
144 2qr7_A Ribosomal protein S6 ki 100.0 3.3E-39 1.1E-43 356.8 19.5 253 614-886 20-281 (342)
145 3og7_A AKAP9-BRAF fusion prote 100.0 8.7E-39 3E-43 345.9 22.0 259 614-889 22-288 (289)
146 3oz6_A Mitogen-activated prote 100.0 2E-39 6.7E-44 366.5 17.4 264 614-885 7-331 (388)
147 2owb_A Serine/threonine-protei 100.0 4.9E-39 1.7E-43 355.5 20.1 253 614-886 39-295 (335)
148 3kmu_A ILK, integrin-linked ki 100.0 1.1E-38 3.8E-43 341.7 22.2 253 615-889 9-270 (271)
149 1nxk_A MAP kinase-activated pr 100.0 9.6E-39 3.3E-43 361.0 22.6 253 616-888 61-327 (400)
150 3cok_A Serine/threonine-protei 100.0 4.5E-39 1.5E-43 346.2 18.9 253 614-885 9-265 (278)
151 2pvf_A Fibroblast growth facto 100.0 5.5E-39 1.9E-43 355.2 20.0 262 614-890 33-319 (334)
152 2id5_A Lingo-1, leucine rich r 100.0 9.4E-39 3.2E-43 371.7 22.8 328 183-533 33-360 (477)
153 3p1a_A MYT1 kinase, membrane-a 100.0 6.3E-39 2.2E-43 350.7 20.1 248 615-885 56-307 (311)
154 2acx_A G protein-coupled recep 100.0 4.1E-39 1.4E-43 374.0 19.4 253 615-885 183-447 (576)
155 1k9a_A Carboxyl-terminal SRC k 100.0 1.3E-38 4.4E-43 366.1 23.2 253 614-889 191-445 (450)
156 1csn_A Casein kinase-1; phosph 100.0 8.7E-39 3E-43 347.7 20.7 259 615-890 9-284 (298)
157 1ua2_A CAK, cell division prot 100.0 9E-39 3.1E-43 355.1 21.1 267 613-886 7-295 (346)
158 3bz5_A Internalin-J, INLJ; leu 100.0 3.9E-38 1.3E-42 361.8 27.0 355 38-491 42-396 (457)
159 3dbq_A Dual specificity protei 100.0 5.9E-39 2E-43 356.1 19.5 257 615-889 8-280 (343)
160 3is5_A Calcium-dependent prote 100.0 1.5E-38 5.1E-43 343.3 22.1 255 615-885 21-281 (285)
161 1u5q_A Serine/threonine protei 100.0 7.8E-39 2.7E-43 354.9 20.4 252 615-888 53-311 (348)
162 1t46_A HOMO sapiens V-KIT hard 100.0 9E-39 3.1E-43 350.3 20.6 262 614-889 21-307 (313)
163 3gbz_A Kinase, CMGC CDK; ssgci 100.0 3E-39 1E-43 356.3 16.9 265 613-885 31-321 (329)
164 3op5_A Serine/threonine-protei 100.0 2.4E-39 8.3E-44 362.4 16.3 269 614-892 33-332 (364)
165 3kfa_A Tyrosine-protein kinase 100.0 7E-39 2.4E-43 346.6 19.3 259 614-889 11-271 (288)
166 3lij_A Calcium/calmodulin depe 100.0 1.5E-38 5.1E-43 370.6 23.4 253 615-885 36-294 (494)
167 3lxl_A Tyrosine-protein kinase 100.0 7.3E-39 2.5E-43 353.2 19.7 269 615-893 22-307 (327)
168 2y7j_A Phosphorylase B kinase 100.0 2.3E-38 7.7E-43 354.0 23.9 261 608-885 86-362 (365)
169 3cc6_A Protein tyrosine kinase 100.0 8.3E-39 2.9E-43 344.7 19.7 257 614-888 10-272 (281)
170 3nyv_A Calmodulin-domain prote 100.0 9.9E-39 3.4E-43 371.7 21.8 254 615-886 25-285 (484)
171 2vgo_A Serine/threonine-protei 100.0 9.9E-39 3.4E-43 344.7 20.2 250 615-886 13-266 (284)
172 2wqm_A Serine/threonine-protei 100.0 8.1E-39 2.8E-43 350.0 19.8 267 614-894 30-302 (310)
173 3mwu_A Calmodulin-domain prote 100.0 1.4E-38 4.7E-43 370.3 22.7 255 614-886 20-280 (486)
174 3gni_B Strad alpha; kinase fol 100.0 9.4E-39 3.2E-43 361.1 20.8 268 614-885 23-336 (389)
175 2ac3_A MAP kinase-interacting 100.0 7.8E-39 2.7E-43 351.2 19.3 256 615-885 11-298 (316)
176 3lzb_A Epidermal growth factor 100.0 8.3E-39 2.8E-43 352.2 19.5 259 615-891 14-280 (327)
177 3g33_A Cell division protein k 100.0 8.8E-39 3E-43 349.4 19.5 265 614-885 7-299 (308)
178 4e5w_A Tyrosine-protein kinase 100.0 1.2E-38 4E-43 347.4 20.3 258 615-888 20-301 (302)
179 2xir_A Vascular endothelial gr 100.0 1.3E-38 4.3E-43 349.6 20.1 269 607-889 18-310 (316)
180 1p4o_A Insulin-like growth fac 100.0 3.8E-39 1.3E-43 354.7 15.7 267 609-890 18-300 (322)
181 3llt_A Serine/threonine kinase 100.0 3.8E-39 1.3E-43 360.6 15.8 271 605-885 24-358 (360)
182 1mqb_A Ephrin type-A receptor 100.0 2.2E-38 7.5E-43 349.9 21.5 260 615-891 43-311 (333)
183 2v62_A Serine/threonine-protei 100.0 1E-38 3.4E-43 354.6 18.8 264 615-889 36-328 (345)
184 3q5i_A Protein kinase; CDPK, m 100.0 3E-38 1E-42 369.0 23.8 255 614-886 34-305 (504)
185 3c1x_A Hepatocyte growth facto 100.0 1.3E-38 4.5E-43 356.2 19.8 260 616-892 89-358 (373)
186 2zmd_A Dual specificity protei 100.0 1.4E-38 4.8E-43 358.7 20.2 256 615-888 55-326 (390)
187 2h8h_A Proto-oncogene tyrosine 100.0 7E-39 2.4E-43 375.9 18.3 261 614-892 265-526 (535)
188 1u59_A Tyrosine-protein kinase 100.0 3.2E-38 1.1E-42 341.2 22.1 259 615-891 8-274 (287)
189 3mdy_A Bone morphogenetic prot 100.0 4.8E-38 1.6E-42 348.4 23.7 267 613-892 34-334 (337)
190 2yex_A Serine/threonine-protei 100.0 2.6E-38 8.8E-43 339.9 20.9 256 614-885 5-264 (276)
191 3f66_A Hepatocyte growth facto 100.0 2.8E-38 9.5E-43 343.7 21.3 259 615-890 24-292 (298)
192 3a7i_A MST3 kinase, serine/thr 100.0 5.1E-38 1.7E-42 342.5 23.2 253 614-886 20-274 (303)
193 3dls_A PAS domain-containing s 100.0 1E-38 3.5E-43 352.3 17.9 245 614-885 22-277 (335)
194 2h6d_A 5'-AMP-activated protei 100.0 2.6E-38 8.7E-43 339.9 20.5 250 615-885 10-264 (276)
195 3mi9_A Cell division protein k 100.0 1.4E-38 4.9E-43 354.5 18.9 267 615-887 16-316 (351)
196 1cm8_A Phosphorylated MAP kina 100.0 1.8E-38 6.1E-43 355.0 19.7 257 615-885 24-310 (367)
197 3c4z_A Rhodopsin kinase; Ser/T 100.0 2E-38 6.7E-43 367.8 20.7 254 615-885 184-451 (543)
198 1vzo_A Ribosomal protein S6 ki 100.0 1.9E-39 6.6E-44 361.4 11.7 254 615-886 53-325 (355)
199 1t4h_A Serine/threonine-protei 100.0 6.2E-38 2.1E-42 339.5 23.3 250 616-885 26-285 (290)
200 3i6u_A CDS1, serine/threonine- 100.0 2.1E-38 7.2E-43 360.8 20.5 254 614-885 133-402 (419)
201 2xrw_A Mitogen-activated prote 100.0 2.1E-38 7.2E-43 355.5 19.8 261 615-886 24-322 (371)
202 2clq_A Mitogen-activated prote 100.0 3.6E-38 1.2E-42 342.3 20.9 256 616-885 22-281 (295)
203 1xbb_A Tyrosine-protein kinase 100.0 3.1E-38 1E-42 342.1 20.3 258 614-890 14-280 (291)
204 3brb_A Proto-oncogene tyrosine 100.0 1.5E-38 5E-43 348.5 18.0 266 609-889 27-308 (313)
205 2i1m_A Macrophage colony-stimu 100.0 8.2E-39 2.8E-43 353.8 16.0 261 614-888 44-325 (333)
206 2buj_A Serine/threonine-protei 100.0 9.5E-39 3.2E-43 350.7 16.4 263 614-893 27-310 (317)
207 4eut_A Serine/threonine-protei 100.0 2.6E-38 9E-43 357.8 20.4 272 615-891 8-311 (396)
208 3pls_A Macrophage-stimulating 100.0 4.5E-38 1.5E-42 342.1 21.5 258 617-891 22-289 (298)
209 2wtk_C Serine/threonine-protei 100.0 8.8E-38 3E-42 341.0 23.8 256 615-888 4-269 (305)
210 3gxj_A TGF-beta receptor type- 100.0 3.2E-40 1.1E-44 359.9 4.4 262 615-892 2-300 (303)
211 4e7w_A Glycogen synthase kinas 100.0 2E-38 6.8E-43 358.1 19.2 262 615-885 39-324 (394)
212 1fvr_A Tyrosine-protein kinase 100.0 5E-38 1.7E-42 346.5 21.7 261 615-892 24-303 (327)
213 3lxp_A Non-receptor tyrosine-p 100.0 4.3E-38 1.5E-42 345.4 20.9 261 617-889 32-310 (318)
214 2ozo_A Tyrosine-protein kinase 100.0 5.6E-38 1.9E-42 373.3 22.9 256 617-890 336-599 (613)
215 4aaa_A Cyclin-dependent kinase 100.0 1.7E-38 5.7E-43 350.8 17.1 265 614-885 23-309 (331)
216 2fst_X Mitogen-activated prote 100.0 1.8E-38 6.2E-43 354.5 17.3 260 615-886 28-315 (367)
217 3rp9_A Mitogen-activated prote 100.0 5.1E-38 1.7E-42 363.0 21.7 263 615-886 52-400 (458)
218 1b6c_B TGF-B superfamily recep 100.0 7.9E-38 2.7E-42 347.3 22.1 265 611-891 37-338 (342)
219 3pfq_A PKC-B, PKC-beta, protei 100.0 2E-38 6.7E-43 380.7 18.6 252 614-885 339-600 (674)
220 2w5a_A Serine/threonine-protei 100.0 1.3E-38 4.3E-43 342.9 14.8 257 615-887 5-272 (279)
221 2r3i_A Cell division protein k 100.0 6.4E-38 2.2E-42 341.1 20.4 264 616-885 3-286 (299)
222 1phk_A Phosphorylase kinase; g 100.0 8.3E-38 2.8E-42 340.0 21.0 255 614-885 15-286 (298)
223 2id5_A Lingo-1, leucine rich r 100.0 1.6E-37 5.4E-42 361.4 24.8 320 65-458 14-333 (477)
224 1x8b_A WEE1HU, WEE1-like prote 100.0 8.9E-38 3.1E-42 337.9 21.1 249 614-885 9-282 (289)
225 3n9x_A Phosphotransferase; mal 100.0 1.1E-37 3.7E-42 356.7 22.8 198 615-819 25-252 (432)
226 3pg1_A Mitogen-activated prote 100.0 1.3E-37 4.5E-42 348.4 22.9 271 607-885 13-319 (362)
227 3rgf_A Cyclin-dependent kinase 100.0 6.3E-38 2.1E-42 356.2 20.5 267 616-888 20-339 (405)
228 2j7t_A Serine/threonine-protei 100.0 3.4E-38 1.2E-42 343.7 17.0 255 614-884 17-277 (302)
229 3byv_A Rhoptry kinase; malaria 100.0 5.8E-39 2E-43 361.0 11.2 244 615-884 72-361 (377)
230 3ll6_A Cyclin G-associated kin 100.0 2.1E-38 7.2E-43 351.2 15.5 257 615-890 27-309 (337)
231 3eqc_A Dual specificity mitoge 100.0 2.8E-38 9.5E-43 353.5 16.5 259 615-885 32-327 (360)
232 1byg_A CSK, protein (C-termina 100.0 7.3E-38 2.5E-42 336.7 18.9 251 615-888 20-272 (278)
233 3uzp_A CKI-delta, CKID, casein 100.0 1E-37 3.6E-42 338.8 20.3 260 615-891 8-282 (296)
234 2a19_B Interferon-induced, dou 100.0 2.4E-38 8.3E-43 341.6 15.2 252 614-892 9-277 (284)
235 2pml_X PFPK7, Ser/Thr protein 100.0 9.4E-38 3.2E-42 347.6 20.3 263 615-885 30-325 (348)
236 2jii_A Serine/threonine-protei 100.0 1.7E-38 5.9E-43 353.8 14.3 264 615-892 41-339 (352)
237 3com_A Serine/threonine-protei 100.0 1.6E-37 5.6E-42 340.4 21.8 255 614-886 27-282 (314)
238 4hgt_A Casein kinase I isoform 100.0 9.5E-38 3.2E-42 339.1 19.7 261 613-890 6-281 (296)
239 2yfx_A Tyrosine-protein kinase 100.0 6.8E-38 2.3E-42 345.4 18.6 262 614-890 28-305 (327)
240 4fl3_A Tyrosine-protein kinase 100.0 1.1E-37 3.9E-42 371.5 21.8 248 622-888 375-630 (635)
241 1u46_A ACK-1, activated CDC42 100.0 8.1E-38 2.8E-42 338.8 18.6 259 615-890 17-285 (291)
242 3eb0_A Putative uncharacterize 100.0 1.4E-37 4.8E-42 350.5 21.1 263 613-885 4-324 (383)
243 3qyz_A Mitogen-activated prote 100.0 2.3E-37 7.8E-42 346.4 22.6 264 615-886 26-317 (364)
244 3e3p_A Protein kinase, putativ 100.0 3.3E-38 1.1E-42 353.1 15.7 272 608-886 15-318 (360)
245 2w1i_A JAK2; chromosomal rearr 100.0 8.8E-38 3E-42 344.3 18.8 263 614-888 39-321 (326)
246 2wei_A Calmodulin-domain prote 100.0 2.8E-37 9.6E-42 333.8 22.3 255 613-885 19-279 (287)
247 2ycf_A Serine/threonine-protei 100.0 1.4E-37 4.8E-42 342.1 19.4 253 614-884 8-276 (322)
248 2x7f_A TRAF2 and NCK-interacti 100.0 8.6E-38 2.9E-42 344.6 17.6 260 609-885 17-289 (326)
249 3kvw_A DYRK2, dual specificity 100.0 1.4E-37 4.9E-42 354.8 20.1 261 615-885 96-411 (429)
250 2vwi_A Serine/threonine-protei 100.0 4.1E-38 1.4E-42 343.3 14.9 263 614-884 13-289 (303)
251 3o6n_A APL1; leucine-rich repe 100.0 7.3E-37 2.5E-41 345.9 25.6 351 13-435 2-353 (390)
252 2b9h_A MAP kinase FUS3, mitoge 100.0 2.3E-37 7.9E-42 345.2 21.1 264 615-886 10-309 (353)
253 3g2f_A Bone morphogenetic prot 100.0 5E-38 1.7E-42 348.0 15.4 266 614-892 11-321 (336)
254 1j1b_A Glycogen synthase kinas 100.0 1.2E-37 4.2E-42 354.6 18.9 261 615-885 53-339 (420)
255 2i6l_A Mitogen-activated prote 100.0 1.7E-37 6E-42 341.1 18.4 264 615-886 10-309 (320)
256 3nsz_A CK II alpha, casein kin 100.0 5.8E-37 2E-41 338.5 22.6 257 615-885 35-322 (330)
257 3e7e_A HBUB1, BUB1A, mitotic c 100.0 8.8E-38 3E-42 350.0 16.0 254 614-890 63-340 (365)
258 1z57_A Dual specificity protei 100.0 3.9E-37 1.3E-41 341.2 20.7 261 615-885 13-331 (339)
259 4exu_A Mitogen-activated prote 100.0 7.2E-37 2.5E-41 343.0 22.0 258 615-885 41-326 (371)
260 1zy4_A Serine/threonine-protei 100.0 4.3E-37 1.5E-41 335.1 19.1 254 614-885 4-286 (303)
261 1blx_A Cyclin-dependent kinase 100.0 2.7E-37 9.3E-42 340.6 17.6 264 613-885 8-299 (326)
262 2j0j_A Focal adhesion kinase 1 100.0 5.8E-37 2E-41 366.8 21.6 257 614-888 388-650 (656)
263 2vx3_A Dual specificity tyrosi 100.0 8.6E-37 3E-41 343.9 21.5 264 614-885 52-375 (382)
264 3fme_A Dual specificity mitoge 100.0 5E-37 1.7E-41 332.4 18.4 257 614-885 5-269 (290)
265 3coi_A Mitogen-activated prote 100.0 3.3E-36 1.1E-40 335.6 24.9 256 615-885 23-308 (353)
266 3q60_A ROP5B; pseudokinase, tr 100.0 7.7E-38 2.6E-42 351.1 11.6 256 615-885 61-355 (371)
267 3sv0_A Casein kinase I-like; t 100.0 5.4E-37 1.8E-41 352.8 18.7 256 615-887 6-276 (483)
268 3cek_A Dual specificity protei 100.0 1E-36 3.4E-41 333.9 19.4 257 613-887 25-297 (313)
269 3oja_B Anopheles plasmodium-re 100.0 3.9E-36 1.3E-40 358.7 25.8 349 12-435 7-359 (597)
270 3an0_A Dual specificity mitoge 100.0 6E-37 2E-41 339.9 16.7 257 614-885 49-313 (340)
271 3fhr_A MAP kinase-activated pr 100.0 1.2E-36 4.3E-41 336.1 19.2 253 614-886 26-291 (336)
272 3o6n_A APL1; leucine-rich repe 100.0 3.5E-36 1.2E-40 340.3 23.0 335 133-533 44-378 (390)
273 2y4i_B KSR2, HKSR2, kinase sup 100.0 3.5E-37 1.2E-41 338.6 14.2 260 613-891 30-304 (319)
274 1wak_A Serine/threonine-protei 100.0 8.3E-37 2.8E-41 346.6 17.2 262 615-885 36-394 (397)
275 2rio_A Serine/threonine-protei 100.0 1.8E-36 6E-41 346.6 18.6 254 617-885 16-298 (434)
276 2dyl_A Dual specificity mitoge 100.0 3.2E-36 1.1E-40 330.7 19.0 254 615-885 24-286 (318)
277 3oja_B Anopheles plasmodium-re 100.0 7.1E-36 2.4E-40 356.4 23.0 335 133-533 50-384 (597)
278 2eu9_A Dual specificity protei 100.0 6.1E-36 2.1E-40 333.9 21.0 261 615-885 18-336 (355)
279 2iwi_A Serine/threonine-protei 100.0 1E-36 3.5E-41 333.7 14.0 247 612-886 27-287 (312)
280 3aln_A Dual specificity mitoge 100.0 3.5E-36 1.2E-40 331.7 17.7 259 615-885 21-288 (327)
281 3p23_A Serine/threonine-protei 100.0 5.5E-36 1.9E-40 341.3 18.4 252 615-885 23-286 (432)
282 1q8y_A SR protein kinase; tran 100.0 6E-36 2.1E-40 336.4 17.7 263 615-886 18-337 (373)
283 3a99_A Proto-oncogene serine/t 100.0 9.4E-37 3.2E-41 334.9 10.5 244 614-885 41-296 (320)
284 1ogq_A PGIP-2, polygalacturona 100.0 3.3E-36 1.1E-40 328.9 13.7 258 278-538 51-312 (313)
285 3qa8_A MGC80376 protein; kinas 100.0 6.8E-37 2.3E-41 358.4 8.0 261 615-880 13-295 (676)
286 4fmz_A Internalin; leucine ric 100.0 1.9E-34 6.5E-39 320.8 25.7 241 249-506 106-346 (347)
287 4fmz_A Internalin; leucine ric 100.0 1.8E-34 6.1E-39 321.0 24.0 152 321-482 195-346 (347)
288 3uqc_A Probable conserved tran 100.0 5.2E-35 1.8E-39 314.9 16.4 230 616-891 31-267 (286)
289 3m2w_A MAP kinase-activated pr 100.0 3.4E-34 1.2E-38 311.5 19.8 235 615-886 16-260 (299)
290 2pzi_A Probable serine/threoni 100.0 1E-34 3.4E-39 351.3 17.0 238 615-886 79-325 (681)
291 2ft3_A Biglycan; proteoglycan, 100.0 1.1E-33 3.7E-38 312.3 23.0 288 63-384 34-331 (332)
292 2vuw_A Serine/threonine-protei 100.0 5.3E-35 1.8E-39 323.5 11.0 246 614-884 18-333 (336)
293 1xku_A Decorin; proteoglycan, 100.0 4E-33 1.4E-37 307.6 23.8 287 43-384 36-330 (330)
294 3dzo_A Rhoptry kinase domain; 100.0 2.7E-34 9.1E-39 326.3 13.2 244 614-883 76-364 (413)
295 2ft3_A Biglycan; proteoglycan, 100.0 1.1E-32 3.6E-37 304.4 23.9 288 207-504 34-331 (332)
296 1xku_A Decorin; proteoglycan, 100.0 1.8E-32 6.1E-37 302.4 24.2 269 159-455 53-329 (330)
297 4fcg_A Uncharacterized protein 100.0 4.3E-33 1.5E-37 306.0 16.4 276 2-338 34-314 (328)
298 1z7x_W Ribonuclease inhibitor; 100.0 4.3E-36 1.5E-40 347.9 -15.2 365 62-483 3-412 (461)
299 1z7x_W Ribonuclease inhibitor; 100.0 1.3E-35 4.4E-40 343.9 -11.4 388 39-464 4-446 (461)
300 2z80_A TOLL-like receptor 2, v 100.0 2E-31 7E-36 296.8 12.9 286 22-365 26-317 (353)
301 4fcg_A Uncharacterized protein 100.0 7.9E-31 2.7E-35 288.0 14.9 289 3-359 21-311 (328)
302 3ogk_B Coronatine-insensitive 100.0 1.6E-33 5.4E-38 337.3 -9.0 452 24-502 40-547 (592)
303 2z66_A Variable lymphocyte rec 100.0 2.3E-30 7.7E-35 282.3 16.2 250 26-314 7-261 (306)
304 2z80_A TOLL-like receptor 2, v 100.0 1.6E-30 5.5E-35 289.5 14.5 259 253-511 52-319 (353)
305 2z66_A Variable lymphocyte rec 100.0 5.6E-30 1.9E-34 279.2 16.1 250 256-509 10-264 (306)
306 3zyj_A Leucine-rich repeat-con 100.0 4.8E-29 1.6E-33 286.2 22.5 248 254-506 44-292 (440)
307 3zyi_A Leucine-rich repeat-con 100.0 5.4E-29 1.8E-33 286.9 22.2 247 255-506 56-303 (452)
308 3g06_A SSPH2 (leucine-rich rep 100.0 9.4E-30 3.2E-34 300.3 16.0 292 12-372 10-307 (622)
309 3zyj_A Leucine-rich repeat-con 100.0 5.1E-29 1.7E-33 286.0 21.2 252 278-534 44-297 (440)
310 3zyi_A Leucine-rich repeat-con 100.0 5.3E-29 1.8E-33 287.0 20.8 251 279-534 56-308 (452)
311 1ozn_A Reticulon 4 receptor; N 100.0 7.1E-29 2.4E-33 267.4 19.6 236 253-489 32-268 (285)
312 3oja_A Leucine-rich immune mol 100.0 1.6E-30 5.4E-35 301.3 4.1 235 253-501 34-270 (487)
313 3ogk_B Coronatine-insensitive 100.0 5.2E-32 1.8E-36 324.1 -9.4 327 180-508 162-528 (592)
314 1ozn_A Reticulon 4 receptor; N 100.0 1.7E-28 6E-33 264.4 18.5 248 230-478 33-283 (285)
315 3o53_A Protein LRIM1, AGAP0063 100.0 3.1E-30 1.1E-34 282.4 3.9 265 232-510 13-280 (317)
316 1wwl_A Monocyte differentiatio 100.0 1.1E-29 3.7E-34 277.4 6.8 249 60-338 41-309 (312)
317 1wwl_A Monocyte differentiatio 100.0 2.9E-30 9.9E-35 281.9 0.1 250 249-508 39-311 (312)
318 3o53_A Protein LRIM1, AGAP0063 100.0 2.9E-29 1E-33 274.6 6.3 229 246-488 51-282 (317)
319 3g06_A SSPH2 (leucine-rich rep 100.0 4.2E-27 1.4E-31 277.7 24.8 267 159-492 41-307 (622)
320 4azs_A Methyltransferase WBDD; 99.9 7.1E-29 2.4E-33 291.1 8.3 185 624-819 242-438 (569)
321 2p1m_B Transport inhibitor res 99.9 1.5E-31 5E-36 320.4 -16.4 432 24-482 33-519 (594)
322 3oja_A Leucine-rich immune mol 99.9 2.3E-28 7.9E-33 283.0 8.6 245 275-533 32-286 (487)
323 2o6q_A Variable lymphocyte rec 99.9 6.3E-27 2.1E-31 249.9 18.1 193 23-219 2-194 (270)
324 2z62_A TOLL-like receptor 4, v 99.9 5.8E-26 2E-30 243.4 17.6 210 302-512 29-243 (276)
325 2z62_A TOLL-like receptor 4, v 99.9 1.8E-25 6.2E-30 239.5 18.1 224 257-484 11-239 (276)
326 2p1m_B Transport inhibitor res 99.9 2.7E-29 9.3E-34 300.6 -13.8 414 39-480 67-542 (594)
327 1p9a_G Platelet glycoprotein I 99.9 2E-25 6.9E-30 240.2 16.6 206 297-532 6-211 (290)
328 2o6q_A Variable lymphocyte rec 99.9 3.7E-24 1.3E-28 228.3 23.4 204 253-459 16-219 (270)
329 3rfs_A Internalin B, repeat mo 99.9 4.9E-25 1.7E-29 235.4 16.0 160 345-511 81-240 (272)
330 1p9a_G Platelet glycoprotein I 99.9 1.5E-24 5.2E-29 233.4 18.1 205 272-483 5-209 (290)
331 3m19_A Variable lymphocyte rec 99.9 6.5E-25 2.2E-29 231.4 14.9 193 23-221 2-194 (251)
332 3rfs_A Internalin B, repeat mo 99.9 3.2E-24 1.1E-28 229.0 17.9 209 275-494 39-247 (272)
333 3en9_A Glycoprotease, O-sialog 99.9 2.4E-25 8.3E-30 259.7 6.5 185 619-820 339-539 (540)
334 3goz_A Leucine-rich repeat-con 99.9 3.6E-25 1.2E-29 246.9 2.6 257 43-318 3-301 (362)
335 2xwt_C Thyrotropin receptor; s 99.9 1.4E-23 4.7E-28 219.6 14.4 196 302-503 32-236 (239)
336 2xwt_C Thyrotropin receptor; s 99.9 1.9E-23 6.5E-28 218.6 15.5 206 53-287 25-236 (239)
337 3m19_A Variable lymphocyte rec 99.9 3.8E-23 1.3E-27 217.9 15.4 178 302-482 15-192 (251)
338 2ast_B S-phase kinase-associat 99.9 2.1E-25 7.1E-30 246.5 -2.3 270 23-347 34-315 (336)
339 3goz_A Leucine-rich repeat-con 99.9 3.5E-25 1.2E-29 247.0 -0.6 176 211-386 3-209 (362)
340 4glp_A Monocyte differentiatio 99.9 2E-23 7E-28 227.4 12.8 200 252-457 90-306 (310)
341 4glp_A Monocyte differentiatio 99.9 1.9E-23 6.6E-28 227.6 12.2 199 303-507 93-308 (310)
342 4ay9_X Follicle-stimulating ho 99.9 1.2E-22 3.9E-27 225.4 17.9 244 26-311 9-256 (350)
343 4ay9_X Follicle-stimulating ho 99.9 2E-22 6.7E-27 223.5 18.0 240 256-503 12-256 (350)
344 1h6u_A Internalin H; cell adhe 99.9 6.7E-23 2.3E-27 222.8 13.9 194 274-507 38-231 (308)
345 2ca6_A RAN GTPase-activating p 99.9 1.9E-25 6.4E-30 251.8 -7.1 249 244-509 23-319 (386)
346 2ca6_A RAN GTPase-activating p 99.9 5.2E-25 1.8E-29 248.2 -4.6 247 228-486 31-320 (386)
347 2ast_B S-phase kinase-associat 99.9 2.8E-24 9.7E-29 237.4 1.3 249 255-511 49-311 (336)
348 1h6u_A Internalin H; cell adhe 99.9 5.4E-22 1.8E-26 215.7 16.2 194 249-458 37-230 (308)
349 1zar_A RIO2 kinase; serine kin 99.9 1.6E-22 5.4E-27 216.1 9.7 152 610-793 84-253 (282)
350 3cvr_A Invasion plasmid antige 99.9 4.8E-23 1.7E-27 240.0 6.1 221 9-301 28-254 (571)
351 2o6s_A Variable lymphocyte rec 99.9 5.2E-21 1.8E-25 195.3 17.1 161 326-493 29-189 (208)
352 3cvr_A Invasion plasmid antige 99.8 3.4E-21 1.2E-25 224.4 15.8 188 254-469 60-254 (571)
353 2o6s_A Variable lymphocyte rec 99.8 9E-21 3.1E-25 193.5 17.1 162 302-470 29-190 (208)
354 3e6j_A Variable lymphocyte rec 99.8 1.5E-20 5E-25 194.8 14.4 158 22-195 15-172 (229)
355 2v9t_B SLIT homolog 2 protein 99.8 8E-20 2.7E-24 187.9 13.0 150 43-195 16-165 (220)
356 2v70_A SLIT-2, SLIT homolog 2 99.8 3.4E-20 1.2E-24 190.7 9.1 133 376-508 35-168 (220)
357 2xot_A Amphoterin-induced prot 99.8 1.2E-19 4.1E-24 201.9 13.4 127 281-410 22-149 (361)
358 1h6t_A Internalin B; cell adhe 99.8 8.9E-20 3E-24 196.3 11.7 169 300-482 45-213 (291)
359 1dce_A Protein (RAB geranylger 99.8 5.2E-22 1.8E-26 232.8 -7.1 204 83-332 346-567 (567)
360 2xot_A Amphoterin-induced prot 99.8 9.1E-20 3.1E-24 202.9 11.3 176 304-482 21-202 (361)
361 2v70_A SLIT-2, SLIT homolog 2 99.8 2.2E-19 7.4E-24 184.7 13.0 151 42-219 15-166 (220)
362 2v9t_B SLIT homolog 2 protein 99.8 4.3E-19 1.5E-23 182.4 14.9 152 304-458 14-165 (220)
363 1m9s_A Internalin B; cell inva 99.8 4.2E-19 1.4E-23 209.3 16.9 172 250-459 40-211 (605)
364 1m9s_A Internalin B; cell inva 99.8 8E-20 2.7E-24 215.4 9.9 181 298-492 40-220 (605)
365 1h6t_A Internalin B; cell adhe 99.8 4.2E-19 1.4E-23 191.0 14.0 172 250-459 43-214 (291)
366 3e6j_A Variable lymphocyte rec 99.8 7.4E-19 2.5E-23 182.0 14.8 154 353-510 23-176 (229)
367 1dce_A Protein (RAB geranylger 99.8 1.7E-21 5.7E-26 228.5 -7.5 204 107-356 346-567 (567)
368 4ezg_A Putative uncharacterize 99.8 6E-19 2.1E-23 178.2 11.2 155 57-219 39-194 (197)
369 1xeu_A Internalin C; cellular 99.8 3.4E-19 1.2E-23 188.6 7.6 81 252-338 18-98 (263)
370 3sb4_A Hypothetical leucine ri 99.8 2.4E-19 8.1E-24 196.9 6.2 289 61-379 24-327 (329)
371 4b8c_D Glucose-repressible alc 99.8 9.2E-20 3.1E-24 220.6 2.3 202 14-224 152-359 (727)
372 1xeu_A Internalin C; cellular 99.8 5.1E-19 1.7E-23 187.2 7.2 165 279-458 21-185 (263)
373 3sb4_A Hypothetical leucine ri 99.7 3E-19 1E-23 196.1 4.6 290 85-427 24-327 (329)
374 1zth_A RIO1 serine protein kin 99.7 3.6E-18 1.2E-22 180.1 12.5 139 615-768 46-219 (258)
375 4ezg_A Putative uncharacterize 99.7 2.5E-18 8.6E-23 173.6 9.8 153 347-507 42-195 (197)
376 4b8c_D Glucose-repressible alc 99.7 5.5E-19 1.9E-23 213.8 5.6 143 341-487 216-359 (727)
377 1w8a_A SLIT protein; signaling 99.7 1.7E-18 5.8E-23 173.9 8.1 131 352-485 11-142 (192)
378 1w8a_A SLIT protein; signaling 99.7 9.1E-18 3.1E-22 168.6 11.6 132 328-462 11-143 (192)
379 2ell_A Acidic leucine-rich nuc 99.7 1.3E-16 4.4E-21 156.5 10.6 132 86-219 24-160 (168)
380 4fdw_A Leucine rich hypothetic 99.7 7.2E-16 2.5E-20 172.7 17.3 250 245-506 128-383 (401)
381 4fdw_A Leucine rich hypothetic 99.7 1.3E-15 4.6E-20 170.5 19.4 248 199-457 129-382 (401)
382 2ell_A Acidic leucine-rich nuc 99.7 2.3E-16 7.8E-21 154.8 11.0 132 349-482 24-160 (168)
383 2wfh_A SLIT homolog 2 protein 99.7 2.8E-16 9.7E-21 157.6 11.5 127 376-506 13-139 (193)
384 4fs7_A Uncharacterized protein 99.6 3.4E-15 1.2E-19 168.0 20.5 67 74-142 59-125 (394)
385 2wfh_A SLIT homolog 2 protein 99.6 4.6E-16 1.6E-20 156.0 11.6 126 42-171 14-139 (193)
386 2o6r_A Variable lymphocyte rec 99.6 5.5E-16 1.9E-20 153.5 11.5 134 375-511 9-142 (177)
387 2o6r_A Variable lymphocyte rec 99.6 7.6E-16 2.6E-20 152.4 12.0 132 26-172 7-138 (177)
388 2je0_A Acidic leucine-rich nuc 99.6 1.8E-16 6E-21 152.2 6.6 110 62-173 17-128 (149)
389 4fs7_A Uncharacterized protein 99.6 5.7E-15 1.9E-19 166.2 18.9 335 121-497 58-392 (394)
390 2je0_A Acidic leucine-rich nuc 99.6 4.7E-16 1.6E-20 149.1 8.5 127 349-477 17-148 (149)
391 4gyi_A RIO2 kinase; protein ki 99.6 1.6E-16 5.5E-21 173.3 5.5 140 615-768 94-265 (397)
392 1ds9_A Outer arm dynein; leuci 99.6 2.5E-17 8.4E-22 166.5 -6.1 155 58-219 14-185 (198)
393 1a9n_A U2A', U2A'; complex (nu 99.6 1.6E-15 5.5E-20 149.9 6.8 133 369-507 15-154 (176)
394 1a9n_A U2A', U2A'; complex (nu 99.5 6.3E-15 2.2E-19 145.6 8.7 132 345-482 15-153 (176)
395 1ds9_A Outer arm dynein; leuci 99.5 7.7E-17 2.6E-21 162.8 -7.3 111 344-459 43-154 (198)
396 3g39_A Variable lymphocyte rec 99.5 5E-14 1.7E-18 138.1 9.3 105 375-482 11-115 (170)
397 3g39_A Variable lymphocyte rec 99.5 1.3E-13 4.6E-18 135.0 10.7 107 400-509 12-118 (170)
398 2r9u_A Variable lymphocyte rec 99.5 9.8E-14 3.4E-18 136.4 9.3 104 376-482 15-118 (174)
399 2r9u_A Variable lymphocyte rec 99.4 2.4E-13 8.1E-18 133.6 11.0 105 41-148 15-119 (174)
400 4gt6_A Cell surface protein; l 99.4 2.4E-12 8.3E-17 144.7 20.4 132 343-481 259-390 (394)
401 4gt6_A Cell surface protein; l 99.4 1.6E-12 5.4E-17 146.2 18.9 157 56-218 57-217 (394)
402 2ifg_A High affinity nerve gro 99.4 9E-13 3.1E-17 145.6 11.3 112 23-148 3-117 (347)
403 3un9_A NLR family member X1; l 99.3 5.3E-14 1.8E-18 156.0 -4.8 158 62-219 72-252 (372)
404 2ifg_A High affinity nerve gro 99.3 1.9E-12 6.5E-17 143.0 6.9 104 377-483 12-117 (347)
405 3un9_A NLR family member X1; l 99.3 6.4E-14 2.2E-18 155.3 -7.2 111 397-507 155-284 (372)
406 3tm0_A Aminoglycoside 3'-phosp 99.2 2.7E-11 9.2E-16 128.0 9.4 146 612-766 10-212 (263)
407 4h09_A Hypothetical leucine ri 99.2 1.2E-09 4.1E-14 122.0 22.2 316 104-468 40-355 (379)
408 4h09_A Hypothetical leucine ri 99.2 1.6E-09 5.6E-14 120.9 22.0 171 319-495 188-358 (379)
409 1nd4_A Aminoglycoside 3'-phosp 99.0 1.6E-10 5.3E-15 121.9 7.1 128 625-766 29-213 (264)
410 3dxp_A Putative acyl-COA dehyd 98.9 3.3E-09 1.1E-13 117.4 11.0 142 620-767 42-248 (359)
411 2ra8_A Uncharacterized protein 98.9 6E-10 2E-14 122.2 3.4 59 320-381 167-227 (362)
412 2ra8_A Uncharacterized protein 98.9 5.4E-10 1.8E-14 122.6 2.5 60 103-166 165-227 (362)
413 3sg8_A APH(2'')-ID; antibiotic 98.9 1.3E-09 4.3E-14 117.7 5.4 187 621-820 25-288 (304)
414 3rw6_A Nuclear RNA export fact 98.7 2.9E-10 1E-14 118.1 -3.9 160 24-188 76-257 (267)
415 1io0_A Tropomodulin; LRR prote 98.6 2.5E-09 8.5E-14 105.9 -1.7 119 53-171 27-164 (185)
416 3r70_A Aminoglycoside phosphot 98.5 4.4E-07 1.5E-11 98.3 13.6 136 617-767 38-237 (320)
417 3d1u_A Putative fructosamine-3 98.4 1.3E-06 4.6E-11 92.6 12.2 77 619-699 18-97 (288)
418 1io0_A Tropomodulin; LRR prote 98.4 3.1E-08 1.1E-12 97.9 -0.9 123 77-219 27-164 (185)
419 3rw6_A Nuclear RNA export fact 98.4 3.6E-08 1.2E-12 102.3 -0.8 64 397-462 170-237 (267)
420 3tdw_A Gentamicin resistance p 98.3 3.2E-06 1.1E-10 90.8 13.1 135 621-766 24-223 (306)
421 4gkh_A Aminoglycoside 3'-phosp 98.3 2.2E-06 7.4E-11 90.5 10.6 134 623-766 31-222 (272)
422 3e4g_A ATP synthase subunit S, 98.2 9E-07 3.1E-11 85.0 3.7 92 54-145 53-150 (176)
423 3ovc_A Hygromycin-B 4-O-kinase 98.1 9.2E-06 3.1E-10 89.3 12.1 144 618-767 43-243 (362)
424 3ats_A Putative uncharacterize 98.1 5.4E-06 1.9E-10 91.3 8.7 81 621-701 25-122 (357)
425 3e4g_A ATP synthase subunit S, 97.9 2.6E-06 8.8E-11 81.8 2.2 90 79-168 54-149 (176)
426 3f7w_A Putative fructosamine-3 97.8 6.4E-05 2.2E-09 79.8 11.4 79 617-699 16-97 (288)
427 2olc_A MTR kinase, methylthior 97.7 9.8E-05 3.4E-09 82.4 10.1 75 621-697 35-120 (397)
428 3jr1_A Putative fructosamine-3 97.6 0.00026 8.8E-09 75.5 12.1 139 620-763 40-232 (312)
429 2q83_A YTAA protein; 2635576, 97.6 7.2E-05 2.5E-09 81.7 7.8 140 622-766 38-251 (346)
430 1pgv_A TMD-1, tropomodulin TMD 97.4 2.3E-05 7.9E-10 76.7 0.2 114 56-169 35-168 (197)
431 2pyw_A Uncharacterized protein 97.3 0.00062 2.1E-08 76.4 10.2 78 737-815 232-312 (420)
432 1pgv_A TMD-1, tropomodulin TMD 97.2 0.00011 3.7E-09 71.9 2.3 88 81-168 36-136 (197)
433 3dxq_A Choline/ethanolamine ki 97.2 0.0015 5E-08 69.7 11.0 73 619-699 21-95 (301)
434 1zyl_A Hypothetical protein YI 96.9 0.008 2.7E-07 64.7 14.4 157 606-766 11-222 (328)
435 3csv_A Aminoglycoside phosphot 96.9 0.0039 1.3E-07 67.5 11.3 31 737-767 183-217 (333)
436 2ppq_A HSK, HK, homoserine kin 96.9 0.0086 2.9E-07 64.3 13.7 157 607-766 8-216 (322)
437 1nw1_A Choline kinase (49.2 KD 96.8 0.0026 8.9E-08 71.3 9.1 73 621-699 78-159 (429)
438 2qg7_A Ethanolamine kinase PV0 96.7 0.0092 3.2E-07 67.1 12.4 74 621-699 113-188 (458)
439 3rfe_A Platelet glycoprotein I 96.6 0.0018 6.3E-08 59.0 4.9 56 401-458 12-68 (130)
440 2yle_A Protein spire homolog 1 96.6 0.014 4.7E-07 57.3 11.0 101 698-817 34-134 (229)
441 3feg_A Choline/ethanolamine ki 96.5 0.0072 2.4E-07 66.2 9.7 140 622-766 56-253 (379)
442 3rfe_A Platelet glycoprotein I 96.3 0.0062 2.1E-07 55.5 6.4 57 376-434 11-68 (130)
443 3c5i_A Choline kinase; choline 96.2 0.0067 2.3E-07 66.6 7.9 73 622-699 39-121 (369)
444 3i1a_A Spectinomycin phosphotr 95.9 0.04 1.4E-06 59.5 12.1 30 737-766 206-235 (339)
445 3f2s_A CK, chetk-alpha, cholin 95.1 0.069 2.4E-06 58.6 10.1 141 622-766 58-279 (401)
446 3mes_A Choline kinase; malaria 94.0 0.14 4.8E-06 56.7 9.5 74 621-699 75-157 (424)
447 3g15_A CK, chetk-alpha, cholin 90.6 0.43 1.5E-05 52.6 7.8 29 738-766 245-279 (401)
448 4ann_A ESSB; membrane protein, 79.0 4.3 0.00015 39.7 7.3 116 670-820 43-158 (215)
449 4ano_A ESSB; membrane protein, 77.4 6.8 0.00023 38.4 8.3 115 670-820 48-163 (219)
450 3cxl_A N-chimerin; SH2, RHO-GA 66.0 0.67 2.3E-05 52.0 -2.2 59 622-683 148-215 (463)
451 2jwa_A Receptor tyrosine-prote 62.9 2 6.9E-05 29.9 0.6 7 554-560 14-20 (44)
452 2ks1_B Epidermal growth factor 49.6 5.3 0.00018 27.9 0.9 11 555-565 15-25 (44)
453 2l2t_A Receptor tyrosine-prote 47.7 5.3 0.00018 27.8 0.7 9 556-564 15-23 (44)
454 2lz0_A Uncharacterized protein 46.6 22 0.00075 29.9 4.6 45 337-382 8-52 (100)
455 2ks1_B Epidermal growth factor 46.3 6.1 0.00021 27.6 0.8 27 551-577 14-40 (44)
456 2lz0_A Uncharacterized protein 41.4 59 0.002 27.2 6.5 14 105-118 38-51 (100)
457 2l2t_A Receptor tyrosine-prote 39.3 8.6 0.00029 26.8 0.7 25 552-576 14-38 (44)
458 1cja_A Protein (actin-fragmin 27.6 2E+02 0.0067 30.0 8.9 142 618-767 71-237 (342)
459 3ox7_P MH027; urokinase-type p 26.6 15 0.00052 20.4 0.2 9 24-32 6-14 (23)
460 2rdd_B UPF0092 membrane protei 23.8 45 0.0016 22.2 2.2 20 564-583 12-31 (37)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=6.8e-75 Score=713.72 Aligned_cols=537 Identities=35% Similarity=0.573 Sum_probs=433.2
Q ss_pred CcccccccCccccCCCCCCCCCCCCCCcceeEecCCCCcEEEEEcCCCCCccc---cC----------------------
Q 002278 1 MAIKASFSNLANVLLDWDDVHNSDFCSWRGVFCDNSSLSVVSLNLSSLNLGGE---IS---------------------- 55 (943)
Q Consensus 1 ~~~~~~~~~~~~~~~~w~~~~~~~~c~w~gv~c~~~~~~v~~L~l~~~~~~~~---~~---------------------- 55 (943)
++||+++.||. .+++|.. ++|||+|.||.|+ +++|+.|||+++++.|. +|
T Consensus 18 l~~k~~~~~~~-~l~~W~~--~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l 92 (768)
T 3rgz_A 18 ISFKDVLPDKN-LLPDWSS--NKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGS 92 (768)
T ss_dssp HHHHTTCSCTT-SSTTCCT--TSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEEC
T ss_pred HHHHhhCCCcc-cccCCCC--CCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCC
Confidence 47999999998 9999974 6899999999998 68999999999999886 43
Q ss_pred -CCcCCCCCCCEEEeeCCcccccCCC--CccCCCCCcEEeccCCCcCCccchhc--------------------------
Q 002278 56 -PSIGDLRNLQSIDFQGNKLTGQIPD--EIGNCGSLVHIELSDNSLYGDIPFSI-------------------------- 106 (943)
Q Consensus 56 -~~l~~l~~L~~L~Ls~n~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~~~-------------------------- 106 (943)
+.++.+++|++|||++|.++|.+|. .|+++++|++|+|++|.+.+..|..+
T Consensus 93 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 172 (768)
T 3rgz_A 93 VSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWV 172 (768)
T ss_dssp CCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHH
T ss_pred chhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhh
Confidence 5778888899999999998887777 77777777777777777665544332
Q ss_pred ------------------------cccccceEEEecCcccccCCCcccCCCCCCcEEEEeccccccccchhcccccccee
Q 002278 107 ------------------------SKLKQLEFLNLKNNQLTGPIPSTLTQIPNLKTLDLARNQLTGEIPRLIYWNEVLQY 162 (943)
Q Consensus 107 ------------------------~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 162 (943)
+.+++|++|+|++|++++.+|. +.++++|++|+|++|++++.+|..+..+++|++
T Consensus 173 ~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 251 (768)
T 3rgz_A 173 LSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKL 251 (768)
T ss_dssp HTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCE
T ss_pred hhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCE
Confidence 2344455555555555544444 777777777777777777777777776666666
Q ss_pred ccccCCccCC----------------------CCCcccccc-cccceeeccceecccccCCCCcCCCcccEEEeeccccc
Q 002278 163 LGLRGNALTG----------------------MLSPDMCQL-TGLWYFDVRGNNLTGTIPDSIGNCTSFEILDISYNQIT 219 (943)
Q Consensus 163 L~L~~n~l~~----------------------~~~~~~~~l-~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~ 219 (943)
|+|++|.+++ ..|..+..+ ++|++|+|++|++++.+|..|+++++|++|+|++|+++
T Consensus 252 L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~ 331 (768)
T 3rgz_A 252 LNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 331 (768)
T ss_dssp EECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred EECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCccc
Confidence 6666665542 233344443 77888888888887777777777777777777777777
Q ss_pred CcCCCC-C-CcceEeEEEecCccccccCCccccc---------------------------cCCCcEEecCCCCCCCCCC
Q 002278 220 GEIPYN-I-GFLQVATLSLQGNKLTGKIPEVIGL---------------------------MQALAVLDLSENELVGPIP 270 (943)
Q Consensus 220 ~~~~~~-~-~~~~L~~L~L~~n~l~~~~~~~l~~---------------------------l~~L~~L~Ls~N~l~~~~~ 270 (943)
+.+|.. + ...+|++|++++|.+++.+|..+.. +++|+.|++++|.+.+.+|
T Consensus 332 ~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p 411 (768)
T 3rgz_A 332 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP 411 (768)
T ss_dssp EECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECC
T ss_pred CcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccC
Confidence 666642 2 3345666666666665555555444 4456666666666666777
Q ss_pred cccCCCCCcceEEecCCCCCCCCCCCcCCCCcCcEEEcccCccccccccccCCcccceEEEccccccCCcCcccccCCCc
Q 002278 271 PILGNLSYTGKLYLHGNKLTGPIPPELGNMSKLSYLQLQNNQLVGTIPAELGKLEQLFELNLADNNLEGPIPHNISSCTA 350 (943)
Q Consensus 271 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 350 (943)
..|.++++|+.|+|++|++++.+|..|..+++|++|++++|++.+.+|..+..+++|++|+|++|++++.+|..+..+++
T Consensus 412 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 491 (768)
T 3rgz_A 412 PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTN 491 (768)
T ss_dssp GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred HHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCC
Confidence 77888888888888888888888888888888888888888888888888888889999999999998888888999999
Q ss_pred CcEEEeeCCcccCcccccccccCccceeeccCCcCCCCCCCCCCCCCCccEEecCCCcCCCccCCC--------------
Q 002278 351 LNQFNVHGNRLSGAIPSSFRNLGSLTYLNLSRNNFKGKVPTELGRIINLDTLDLSVNNFSGSVPAS-------------- 416 (943)
Q Consensus 351 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-------------- 416 (943)
|++|+|++|++++.+|.+|..+++|++|+|++|++++.+|..++.+++|+.|++++|.++|.+|..
T Consensus 492 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~ 571 (768)
T 3rgz_A 492 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIA 571 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTC
T ss_pred CCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccc
Confidence 999999999999888999999999999999999998888999999999999999999888766643
Q ss_pred --------------------------------------------------------cccccccceeecccccccccCCcc
Q 002278 417 --------------------------------------------------------IGDLEHLLTLNLSRNHLNGLLPAE 440 (943)
Q Consensus 417 --------------------------------------------------------~~~l~~L~~L~Ls~N~l~~~~p~~ 440 (943)
++.+++|+.|||++|+++|.+|..
T Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~ 651 (768)
T 3rgz_A 572 GKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE 651 (768)
T ss_dssp SCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGG
T ss_pred cccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHH
Confidence 344678899999999999999999
Q ss_pred ccCCCccceecccCccccccCChhhhcccccceecccCcccCCCCCCcCccccCCcccccCCccccccCCCCcccCcCCC
Q 002278 441 FGNLRSIQTIDMSFNQLSGSIPAELGQLQNIISLILNNNNLQGGIPDQLSNCFSLSNLNVSYNNLSGIIPPIRNFSRFSS 520 (943)
Q Consensus 441 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~~~ 520 (943)
|+++++|+.|+|++|+++|.+|..|+++++|+.|+|++|+++|.+|..+.++++|++|||++|+|+|.||...++.++..
T Consensus 652 l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~ 731 (768)
T 3rgz_A 652 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPP 731 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCG
T ss_pred HhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCCCCCCCCccCCCccc
Q 002278 521 NSFIGNPLLCGNWIGSICGPSVTK 544 (943)
Q Consensus 521 ~~~~~Np~~c~~~~~~~c~~~~~~ 544 (943)
.+|.|||++||.|+. .|+.....
T Consensus 732 ~~~~gN~~Lcg~~l~-~C~~~~~~ 754 (768)
T 3rgz_A 732 AKFLNNPGLCGYPLP-RCDPSNAD 754 (768)
T ss_dssp GGGCSCTEEESTTSC-CCCSCC--
T ss_pred HHhcCCchhcCCCCc-CCCCCccC
Confidence 999999999999987 89765433
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.4e-60 Score=583.12 Aligned_cols=466 Identities=35% Similarity=0.541 Sum_probs=412.8
Q ss_pred cEEEEEcCCCCCccccCCCcCCCCCCCEEEeeCCcccccCCCCccCCCCCcEEeccCCCcCCccchhccccccceEEEec
Q 002278 39 SVVSLNLSSLNLGGEISPSIGDLRNLQSIDFQGNKLTGQIPDEIGNCGSLVHIELSDNSLYGDIPFSISKLKQLEFLNLK 118 (943)
Q Consensus 39 ~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 118 (943)
+++.|+|++|++++.+|. ++.+++|++|+|++|++++.+|..|+++++|++|+|++|++++.+|.. .+++|++|+|+
T Consensus 201 ~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~ 277 (768)
T 3rgz_A 201 NLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLA 277 (768)
T ss_dssp TCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECC
T ss_pred cCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECc
Confidence 466777777777766665 777777778888777777777777777777888888877777666654 67778888888
Q ss_pred CcccccCCCcccCCC-CCCcEEEEeccccccccchhccccccceeccccCCccCCCCCc-ccccccccceeeccceeccc
Q 002278 119 NNQLTGPIPSTLTQI-PNLKTLDLARNQLTGEIPRLIYWNEVLQYLGLRGNALTGMLSP-DMCQLTGLWYFDVRGNNLTG 196 (943)
Q Consensus 119 ~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~N~i~~ 196 (943)
+|++++.+|..+..+ ++|++|+|++|++++.+|..|..+++|++|+|++|++++..|. .+..+++|++|++++|++++
T Consensus 278 ~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~ 357 (768)
T 3rgz_A 278 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG 357 (768)
T ss_dssp SSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEE
T ss_pred CCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCc
Confidence 888887888887775 8899999999998888888888889999999999988844444 48888999999999999988
Q ss_pred ccCCCCcCCC-cccEEEeecccccCcCCCCCC---cceEeEEEecCccccccCCccccccCCCcEEecCCCCCCCCCCcc
Q 002278 197 TIPDSIGNCT-SFEILDISYNQITGEIPYNIG---FLQVATLSLQGNKLTGKIPEVIGLMQALAVLDLSENELVGPIPPI 272 (943)
Q Consensus 197 ~~~~~l~~l~-~L~~L~Ls~N~l~~~~~~~~~---~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~ 272 (943)
.+|..+.+++ +|++|++++|++++.+|..+. ..+|+.|++++|.+++.+|..+..+++|++|+|++|.+.+.+|..
T Consensus 358 ~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~ 437 (768)
T 3rgz_A 358 ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS 437 (768)
T ss_dssp CCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGG
T ss_pred cccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHH
Confidence 8888888887 899999999999887776665 357999999999999999999999999999999999999999999
Q ss_pred cCCCCCcceEEecCCCCCCCCCCCcCCCCcCcEEEcccCccccccccccCCcccceEEEccccccCCcCcccccCCCcCc
Q 002278 273 LGNLSYTGKLYLHGNKLTGPIPPELGNMSKLSYLQLQNNQLVGTIPAELGKLEQLFELNLADNNLEGPIPHNISSCTALN 352 (943)
Q Consensus 273 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 352 (943)
|..+++|+.|+|++|.+++.+|..+..+++|++|++++|++++.+|..+.++++|++|+|++|++++.+|..+..+++|+
T Consensus 438 l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 517 (768)
T 3rgz_A 438 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLA 517 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred HhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCCcccCcccccccccCccceeeccCCcCCCCCCCC----------------------------------------
Q 002278 353 QFNVHGNRLSGAIPSSFRNLGSLTYLNLSRNNFKGKVPTE---------------------------------------- 392 (943)
Q Consensus 353 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~---------------------------------------- 392 (943)
+|+|++|++++.+|..+..+++|+.|+|++|+++|.+|..
T Consensus 518 ~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (768)
T 3rgz_A 518 ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQ 597 (768)
T ss_dssp EEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECT
T ss_pred EEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999998776653
Q ss_pred ------------------------------CCCCCCccEEecCCCcCCCccCCCcccccccceeecccccccccCCcccc
Q 002278 393 ------------------------------LGRIINLDTLDLSVNNFSGSVPASIGDLEHLLTLNLSRNHLNGLLPAEFG 442 (943)
Q Consensus 393 ------------------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 442 (943)
+..+++|+.|||++|+++|.+|..|+.++.|+.|+|++|+++|.+|..|+
T Consensus 598 ~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~ 677 (768)
T 3rgz_A 598 GIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVG 677 (768)
T ss_dssp TCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG
T ss_pred cccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHh
Confidence 34467899999999999999999999999999999999999999999999
Q ss_pred CCCccceecccCccccccCChhhhcccccceecccCcccCCCCCCcCccccCCcccccCCcc-cccc
Q 002278 443 NLRSIQTIDMSFNQLSGSIPAELGQLQNIISLILNNNNLQGGIPDQLSNCFSLSNLNVSYNN-LSGI 508 (943)
Q Consensus 443 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~-l~~~ 508 (943)
++++|+.|||++|+++|.+|..+..+++|++|+|++|+|+|.+|.. ..+..+....+.+|+ |+|.
T Consensus 678 ~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg~ 743 (768)
T 3rgz_A 678 DLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGY 743 (768)
T ss_dssp GCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEEST
T ss_pred CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcCC
Confidence 9999999999999999999999999999999999999999999964 456677777788886 6764
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5.4e-59 Score=559.70 Aligned_cols=503 Identities=22% Similarity=0.229 Sum_probs=450.9
Q ss_pred cceeEecCCC---------CcEEEEEcCCCCCccccCCCcCCCCCCCEEEeeCCcccccCCCCccCCCCCcEEeccCCCc
Q 002278 28 WRGVFCDNSS---------LSVVSLNLSSLNLGGEISPSIGDLRNLQSIDFQGNKLTGQIPDEIGNCGSLVHIELSDNSL 98 (943)
Q Consensus 28 w~gv~c~~~~---------~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l 98 (943)
+..|.|.+.+ ..++.|+|++|++++..|.+|+++++|++|+|++|+|++..|+.|+++++|++|+|++|++
T Consensus 14 ~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 93 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93 (606)
T ss_dssp TTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred CceEECCCCCcccCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcc
Confidence 5568887553 3588999999999988788999999999999999999988899999999999999999999
Q ss_pred CCccchhccccccceEEEecCcccccCCCcccCCCCCCcEEEEeccccccccchhccccccceeccccCCccCCCCCccc
Q 002278 99 YGDIPFSISKLKQLEFLNLKNNQLTGPIPSTLTQIPNLKTLDLARNQLTGEIPRLIYWNEVLQYLGLRGNALTGMLSPDM 178 (943)
Q Consensus 99 ~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 178 (943)
++..|.+|+++++|++|+|++|++++..+..|.++++|++|+|++|++++.....+..+++|++|++++|.++++.+..+
T Consensus 94 ~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 173 (606)
T 3t6q_A 94 IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDM 173 (606)
T ss_dssp SEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHH
T ss_pred cccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhh
Confidence 98889999999999999999999998778899999999999999999997554555569999999999999999989999
Q ss_pred ccccccc--eeeccceecccccCCCCcCCCcccEEEeeccccc-----------------------------CcCCCCCC
Q 002278 179 CQLTGLW--YFDVRGNNLTGTIPDSIGNCTSFEILDISYNQIT-----------------------------GEIPYNIG 227 (943)
Q Consensus 179 ~~l~~L~--~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~-----------------------------~~~~~~~~ 227 (943)
..+++|+ .|++++|.+++..|..+.. .+|+.|++++|... ........
T Consensus 174 ~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~ 252 (606)
T 3t6q_A 174 SSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLC 252 (606)
T ss_dssp HTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGG
T ss_pred hhhcccceeEEecCCCccCccChhHhhh-ccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhh
Confidence 9999999 8999999999887777654 68999999887510 00011112
Q ss_pred cceEeEEEecCccccccCCccccccCCCcEEecCCCCCCCCCCcccCCCCCcceEEecCCCCCCCCCCCcCCCCcCcEEE
Q 002278 228 FLQVATLSLQGNKLTGKIPEVIGLMQALAVLDLSENELVGPIPPILGNLSYTGKLYLHGNKLTGPIPPELGNMSKLSYLQ 307 (943)
Q Consensus 228 ~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 307 (943)
..+++.|++++|.+++..+..|..+++|++|++++|.++ .+|..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus 253 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 331 (606)
T 3t6q_A 253 EMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLS 331 (606)
T ss_dssp GSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEE
T ss_pred cCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEE
Confidence 237999999999999999999999999999999999999 6788899999999999999999988888999999999999
Q ss_pred cccCcccccccc-ccCCcccceEEEccccccCCcC--cccccCCCcCcEEEeeCCcccCcccccccccCccceeeccCCc
Q 002278 308 LQNNQLVGTIPA-ELGKLEQLFELNLADNNLEGPI--PHNISSCTALNQFNVHGNRLSGAIPSSFRNLGSLTYLNLSRNN 384 (943)
Q Consensus 308 L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 384 (943)
+++|.+.+.+|. .+..+++|++|++++|.+++.. +..+..+++|++|++++|++.+..|..|..+++|+.|++++|+
T Consensus 332 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 411 (606)
T 3t6q_A 332 IKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR 411 (606)
T ss_dssp CCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCC
T ss_pred CCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCc
Confidence 999999865554 5999999999999999999776 7889999999999999999999999999999999999999999
Q ss_pred CCCCCCC-CCCCCCCccEEecCCCcCCCccCCCcccccccceeeccccccccc---CCccccCCCccceecccCcccccc
Q 002278 385 FKGKVPT-ELGRIINLDTLDLSVNNFSGSVPASIGDLEHLLTLNLSRNHLNGL---LPAEFGNLRSIQTIDMSFNQLSGS 460 (943)
Q Consensus 385 l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---~p~~~~~l~~L~~L~Ls~N~l~~~ 460 (943)
+++..+. .+..+++|+.|++++|.+.+..|..+..+++|++|+|++|++++. .+..|..+++|++|+|++|++++.
T Consensus 412 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 491 (606)
T 3t6q_A 412 LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI 491 (606)
T ss_dssp EECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEE
T ss_pred CCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCcc
Confidence 9877654 489999999999999999988999999999999999999999873 346799999999999999999998
Q ss_pred CChhhhcccccceecccCcccCCCCCCcCccccCCcccccCCccccccCCCC-cccCcCCCCccccCCCCCCCC
Q 002278 461 IPAELGQLQNIISLILNNNNLQGGIPDQLSNCFSLSNLNVSYNNLSGIIPPI-RNFSRFSSNSFIGNPLLCGNW 533 (943)
Q Consensus 461 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~-~~~~~~~~~~~~~Np~~c~~~ 533 (943)
.|..|..+++|+.|+|++|++++..|..+.+++.| .|++++|++++.+|.. ..+..+..+.+.||||.|+++
T Consensus 492 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 492 DQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred ChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 89999999999999999999999999999999999 9999999999988863 556788888999999999864
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.1e-58 Score=562.12 Aligned_cols=508 Identities=21% Similarity=0.203 Sum_probs=384.4
Q ss_pred CCcceeEecCC---------CCcEEEEEcCCCCCccccCCCcCCCCCCCEEEeeCCcccccCCCCccCCCCCcEEeccCC
Q 002278 26 CSWRGVFCDNS---------SLSVVSLNLSSLNLGGEISPSIGDLRNLQSIDFQGNKLTGQIPDEIGNCGSLVHIELSDN 96 (943)
Q Consensus 26 c~w~gv~c~~~---------~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N 96 (943)
|.+..|.|... ..+++.|+|++|++++..+..|+++++|++|+|++|++++..|..|+++++|++|+|++|
T Consensus 4 ~~~~~~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n 83 (680)
T 1ziw_A 4 VSHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN 83 (680)
T ss_dssp CBSSEEECCSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS
T ss_pred eECCeeECCCCCccccccccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC
Confidence 34455666543 236888999999999766677999999999999999999888888999999999999999
Q ss_pred CcCCccchhccccccceEEEecCcccccCCCcccCCCCCCcEEEEeccccccccchhccccccceeccccCCccCCCCCc
Q 002278 97 SLYGDIPFSISKLKQLEFLNLKNNQLTGPIPSTLTQIPNLKTLDLARNQLTGEIPRLIYWNEVLQYLGLRGNALTGMLSP 176 (943)
Q Consensus 97 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 176 (943)
++++..+.+|+++++|++|+|++|++++..|..|.++++|++|+|++|.+++..|..+..+++|++|++++|.++++.+.
T Consensus 84 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 163 (680)
T 1ziw_A 84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE 163 (680)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHH
T ss_pred ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHH
Confidence 99855555799999999999999999877778899999999999999999888888888888999999999988888776
Q ss_pred ccc--cccccceeeccceecccccCCCCcCC---------------------------CcccEEEeecccccCcCCCCCC
Q 002278 177 DMC--QLTGLWYFDVRGNNLTGTIPDSIGNC---------------------------TSFEILDISYNQITGEIPYNIG 227 (943)
Q Consensus 177 ~~~--~l~~L~~L~L~~N~i~~~~~~~l~~l---------------------------~~L~~L~Ls~N~l~~~~~~~~~ 227 (943)
.+. .+++|++|++++|++++..|..|..+ ++|+.|++++|.+++..|..+.
T Consensus 164 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~ 243 (680)
T 1ziw_A 164 ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL 243 (680)
T ss_dssp HHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG
T ss_pred HhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh
Confidence 654 34778888888888877766655543 3445555666666555555443
Q ss_pred cc---eEeEEEecCccccccCCccccccCCCcEEecCCCCCCCCCCc---------------------------------
Q 002278 228 FL---QVATLSLQGNKLTGKIPEVIGLMQALAVLDLSENELVGPIPP--------------------------------- 271 (943)
Q Consensus 228 ~~---~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~--------------------------------- 271 (943)
.. +|+.|++++|.+++..|..|..+++|++|++++|.+.+..|.
T Consensus 244 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~ 323 (680)
T 1ziw_A 244 GLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 323 (680)
T ss_dssp GGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTT
T ss_pred ccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChh
Confidence 32 366666666666666666666666666666666666554443
Q ss_pred ccCCCCCcceEEecCCCCCCCCCCCcCCCCcCcEEEcccC----------------------------ccccccccccCC
Q 002278 272 ILGNLSYTGKLYLHGNKLTGPIPPELGNMSKLSYLQLQNN----------------------------QLVGTIPAELGK 323 (943)
Q Consensus 272 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N----------------------------~l~~~~~~~~~~ 323 (943)
.|..+++|++|++++|.+++..+..|.++++|++|++++| ++++..|..|..
T Consensus 324 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 403 (680)
T 1ziw_A 324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW 403 (680)
T ss_dssp TTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTT
T ss_pred hcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhC
Confidence 3445566666666667777666666666665555555444 444444555666
Q ss_pred cccceEEEccccccCCcCc-ccccCCCcCcEEEeeCCcccCcccccccccCccceeeccCCcCC--CCCCCCCCCCCCcc
Q 002278 324 LEQLFELNLADNNLEGPIP-HNISSCTALNQFNVHGNRLSGAIPSSFRNLGSLTYLNLSRNNFK--GKVPTELGRIINLD 400 (943)
Q Consensus 324 l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~ 400 (943)
+++|+.|+|++|++.+.+| ..|.++++|++|++++|++.+..+..|..+++|+.|++++|.++ +..|..+..+++|+
T Consensus 404 l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~ 483 (680)
T 1ziw_A 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT 483 (680)
T ss_dssp CTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCC
T ss_pred CCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCC
Confidence 6666666666666654333 45666666666666666666666666666777777777777665 45778888999999
Q ss_pred EEecCCCcCCCccCCCcccccccceeecccccccccCC--------ccccCCCccceecccCccccccCChhhhcccccc
Q 002278 401 TLDLSVNNFSGSVPASIGDLEHLLTLNLSRNHLNGLLP--------AEFGNLRSIQTIDMSFNQLSGSIPAELGQLQNII 472 (943)
Q Consensus 401 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p--------~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 472 (943)
.|++++|++++..+..|.++++|++|+|++|++++..+ ..|.++++|+.|+|++|+|+...+..|..+++|+
T Consensus 484 ~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~ 563 (680)
T 1ziw_A 484 ILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELK 563 (680)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred EEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcc
Confidence 99999999998778889999999999999999986532 2378899999999999999944445689999999
Q ss_pred eecccCcccCCCCCCcCccccCCcccccCCccccccCCCCc--ccCcCCCCccccCCCCCCCC
Q 002278 473 SLILNNNNLQGGIPDQLSNCFSLSNLNVSYNNLSGIIPPIR--NFSRFSSNSFIGNPLLCGNW 533 (943)
Q Consensus 473 ~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~--~~~~~~~~~~~~Np~~c~~~ 533 (943)
.|+|++|+|++..+..|..+++|+.|+|++|+|++++|... .+..+..+.+.||||.|+|.
T Consensus 564 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 564 IIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred eeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence 99999999998777778899999999999999999887532 46778888899999999975
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.3e-57 Score=543.21 Aligned_cols=496 Identities=19% Similarity=0.158 Sum_probs=442.5
Q ss_pred ceeEecCC---------CCcEEEEEcCCCCCccccCCCcCCCCCCCEEEeeCCcccccCCCCccCCCCCcEEeccCCCcC
Q 002278 29 RGVFCDNS---------SLSVVSLNLSSLNLGGEISPSIGDLRNLQSIDFQGNKLTGQIPDEIGNCGSLVHIELSDNSLY 99 (943)
Q Consensus 29 ~gv~c~~~---------~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 99 (943)
..|.|.+. ..+++.|+|++|++++..+.+|+++++|++|+|++|+|++..|..|.++++|++|+|++|+++
T Consensus 14 ~~~~c~~~~l~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~ 93 (606)
T 3vq2_A 14 ITYQCMDQKLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ 93 (606)
T ss_dssp TEEECTTSCCSSCCTTSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred CceEccCCCcccCCCCCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCccc
Confidence 35778653 246889999999999877779999999999999999999888999999999999999999999
Q ss_pred CccchhccccccceEEEecCcccccCCCcccCCCCCCcEEEEecccccc-ccchhccccccceeccccCCccCCCCCccc
Q 002278 100 GDIPFSISKLKQLEFLNLKNNQLTGPIPSTLTQIPNLKTLDLARNQLTG-EIPRLIYWNEVLQYLGLRGNALTGMLSPDM 178 (943)
Q Consensus 100 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 178 (943)
+..|.+|+++++|++|+|++|++++..+..|+++++|++|+|++|++++ .+|..|..+++|++|+|++|+++++.+..+
T Consensus 94 ~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 173 (606)
T 3vq2_A 94 SFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDL 173 (606)
T ss_dssp CCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTT
T ss_pred ccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhh
Confidence 8889999999999999999999998887899999999999999999986 579999999999999999999999999889
Q ss_pred ccccccc----eeeccceecccccCCCCcCCCcccEEEeecccccCc---------------------------------
Q 002278 179 CQLTGLW----YFDVRGNNLTGTIPDSIGNCTSFEILDISYNQITGE--------------------------------- 221 (943)
Q Consensus 179 ~~l~~L~----~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~--------------------------------- 221 (943)
..+.+|+ +|++++|.+++..+..+... +|++|++++|.+++.
T Consensus 174 ~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~ 252 (606)
T 3vq2_A 174 QFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEP 252 (606)
T ss_dssp HHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCG
T ss_pred hhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccCh
Confidence 8888776 79999999997766666655 899999999987521
Q ss_pred -CCCCCCcceEeEEEe-cCccccccCCccccccCCCcEEecCCCCCCCCCCcccCCCCCcceEEecCCCCCCCCCCCcCC
Q 002278 222 -IPYNIGFLQVATLSL-QGNKLTGKIPEVIGLMQALAVLDLSENELVGPIPPILGNLSYTGKLYLHGNKLTGPIPPELGN 299 (943)
Q Consensus 222 -~~~~~~~~~L~~L~L-~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 299 (943)
.+.......++.+++ ..|.+.+..|. +..+++|+.|++++|.+.. +| .+..+++|++|++++|.+ +.+| .+ .
T Consensus 253 ~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~ 326 (606)
T 3vq2_A 253 SIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFP-TL-D 326 (606)
T ss_dssp GGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCC-CC-C
T ss_pred HHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC-cccc-cC-C
Confidence 111223335777777 77888888887 9999999999999999974 55 889999999999999999 4677 55 9
Q ss_pred CCcCcEEEcccCccccccccccCCcccceEEEccccccCCc--CcccccCCCcCcEEEeeCCcccCcccccccccCccce
Q 002278 300 MSKLSYLQLQNNQLVGTIPAELGKLEQLFELNLADNNLEGP--IPHNISSCTALNQFNVHGNRLSGAIPSSFRNLGSLTY 377 (943)
Q Consensus 300 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 377 (943)
+++|++|++++|+..+.. .+..+++|++|++++|++++. .|..+..+++|++|++++|.+++ +|..|..+++|+.
T Consensus 327 l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~ 403 (606)
T 3vq2_A 327 LPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQH 403 (606)
T ss_dssp CSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCE
T ss_pred CCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCe
Confidence 999999999999665333 678999999999999999876 38889999999999999999985 6688999999999
Q ss_pred eeccCCcCCCCCC-CCCCCCCCccEEecCCCcCCCccCCCcccccccceeecccccccc-cCCccccCCCccceecccCc
Q 002278 378 LNLSRNNFKGKVP-TELGRIINLDTLDLSVNNFSGSVPASIGDLEHLLTLNLSRNHLNG-LLPAEFGNLRSIQTIDMSFN 455 (943)
Q Consensus 378 L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~Ls~N 455 (943)
|++++|++.+..| ..+..+++|+.|++++|.+.+..|..+..+++|++|+|++|++++ .+|..|..+++|++|+|++|
T Consensus 404 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n 483 (606)
T 3vq2_A 404 LDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC 483 (606)
T ss_dssp EECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred eECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC
Confidence 9999999998877 689999999999999999998899999999999999999999997 47999999999999999999
Q ss_pred cccccCChhhhcccccceecccCcccCCCCCCcCccccCCcccccCCccccccCCCCcccC-cCCCCccccCCCCCCCCC
Q 002278 456 QLSGSIPAELGQLQNIISLILNNNNLQGGIPDQLSNCFSLSNLNVSYNNLSGIIPPIRNFS-RFSSNSFIGNPLLCGNWI 534 (943)
Q Consensus 456 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~-~~~~~~~~~Np~~c~~~~ 534 (943)
++++..|..|..+++|+.|+|++|++++.+|..+..+++|+.|++++|+|+.+++.+..+. .+..+.+.+|||.|++++
T Consensus 484 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~~ 563 (606)
T 3vq2_A 484 QLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEH 563 (606)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred cCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence 9999899999999999999999999999999999999999999999999998887766665 488889999999999764
No 6
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=8.4e-57 Score=558.68 Aligned_cols=494 Identities=23% Similarity=0.240 Sum_probs=407.5
Q ss_pred CCcceeEecCCCCcEEEEEcCCCCCccccCCCcCCCCCCCEEEeeCCcccccC-CCCccCCCCCcEEeccCCCcCCccch
Q 002278 26 CSWRGVFCDNSSLSVVSLNLSSLNLGGEISPSIGDLRNLQSIDFQGNKLTGQI-PDEIGNCGSLVHIELSDNSLYGDIPF 104 (943)
Q Consensus 26 c~w~gv~c~~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~ 104 (943)
|.|..|.+ ...+++.|||++|.+++..+.+|.++++|++|||++|.+.+.+ |..|.++++|++|+|++|++++..|.
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence 45777766 4457889999999999888999999999999999999766566 78899999999999999999988899
Q ss_pred hccccccceEEEecCcccccCCCcc--cCCCCCCcEEEEeccccccccc-hhccccccceeccccCCccCCCCCcccccc
Q 002278 105 SISKLKQLEFLNLKNNQLTGPIPST--LTQIPNLKTLDLARNQLTGEIP-RLIYWNEVLQYLGLRGNALTGMLSPDMCQL 181 (943)
Q Consensus 105 ~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 181 (943)
+|+++++|++|+|++|.+++..|.. |.++++|++|+|++|.+++..+ ..|..+++|++|+|++|.++++.+..+..+
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence 9999999999999999999866665 9999999999999999987655 689999999999999999999999999988
Q ss_pred --cccceeeccceecccccCCCCcCCCc------ccEEEeecccccCcCCCCCC--------------------------
Q 002278 182 --TGLWYFDVRGNNLTGTIPDSIGNCTS------FEILDISYNQITGEIPYNIG-------------------------- 227 (943)
Q Consensus 182 --~~L~~L~L~~N~i~~~~~~~l~~l~~------L~~L~Ls~N~l~~~~~~~~~-------------------------- 227 (943)
++|+.|++++|.+.+..|..+..+++ |++|++++|.+++..+..+.
T Consensus 172 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~ 251 (844)
T 3j0a_A 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN 251 (844)
T ss_dssp HHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSS
T ss_pred cCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccc
Confidence 89999999999999988888877776 99999999988765553321
Q ss_pred -------------cceEeEEEecCccccccCCccccccCCCcEEecCCCCCCCCCCcccCCCCCcceEEecCCCCCCCCC
Q 002278 228 -------------FLQVATLSLQGNKLTGKIPEVIGLMQALAVLDLSENELVGPIPPILGNLSYTGKLYLHGNKLTGPIP 294 (943)
Q Consensus 228 -------------~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 294 (943)
..+++.|++++|.+.+..+..|..+++|+.|+|++|.+.+..|..|.++++|++|+|++|.+++..|
T Consensus 252 l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 331 (844)
T 3j0a_A 252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYS 331 (844)
T ss_dssp STTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCS
T ss_pred cCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCH
Confidence 1357777777777777777777777777777777777777767777777777777777777777667
Q ss_pred CCcCCCCcCcEEEcccCccccccccccCCcccceEEEccccccCCcCcccccCCCcCcEEEeeCCcccCcccccccccCc
Q 002278 295 PELGNMSKLSYLQLQNNQLVGTIPAELGKLEQLFELNLADNNLEGPIPHNISSCTALNQFNVHGNRLSGAIPSSFRNLGS 374 (943)
Q Consensus 295 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 374 (943)
..|..+++|++|++++|.+.+..+..|..+++|+.|+|++|.+++. ..+++|+.|++++|+++. +|.. ..+
T Consensus 332 ~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~~-l~~~---~~~ 402 (844)
T 3j0a_A 332 SNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLVT-LPKI---NLT 402 (844)
T ss_dssp CSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCCC-CCCC---CTT
T ss_pred HHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCccc-cccc---ccc
Confidence 7777777777777777777766666777777777777777777642 226677777777777763 3332 356
Q ss_pred cceeeccCCcCCCCCC-CCCCCCCCccEEecCCCcCCCccCC-Ccccccccceeeccccccc-----ccCCccccCCCcc
Q 002278 375 LTYLNLSRNNFKGKVP-TELGRIINLDTLDLSVNNFSGSVPA-SIGDLEHLLTLNLSRNHLN-----GLLPAEFGNLRSI 447 (943)
Q Consensus 375 L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~-----~~~p~~~~~l~~L 447 (943)
++.|++++|++++... ..+..+++|+.|+|++|++++..+. .+..+++|+.|+|++|.++ +..+..|.++++|
T Consensus 403 l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L 482 (844)
T 3j0a_A 403 ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHL 482 (844)
T ss_dssp CCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCE
T ss_pred cceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccc
Confidence 7778888888774321 2245788999999999999865443 4667899999999999997 4455779999999
Q ss_pred ceecccCccccccCChhhhcccccceecccCcccCCCCCCcCccccCCcccccCCccccccCCCCcccCcCCCCccccCC
Q 002278 448 QTIDMSFNQLSGSIPAELGQLQNIISLILNNNNLQGGIPDQLSNCFSLSNLNVSYNNLSGIIPPIRNFSRFSSNSFIGNP 527 (943)
Q Consensus 448 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~~~~~~~~Np 527 (943)
+.|+|++|+|++..|..|..+++|+.|+|++|+|++..|..+. ++|+.|||++|+|++.+|.. +..+..+.+.|||
T Consensus 483 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np 558 (844)
T 3j0a_A 483 QVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNK 558 (844)
T ss_dssp ECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEEC
T ss_pred cEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCC
Confidence 9999999999988888999999999999999999987777766 89999999999999998853 5678888899999
Q ss_pred CCCCCCC
Q 002278 528 LLCGNWI 534 (943)
Q Consensus 528 ~~c~~~~ 534 (943)
|.|+|.+
T Consensus 559 ~~C~c~~ 565 (844)
T 3j0a_A 559 FICECEL 565 (844)
T ss_dssp CCCSSSC
T ss_pred ccccccc
Confidence 9998764
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.6e-57 Score=546.35 Aligned_cols=471 Identities=18% Similarity=0.290 Sum_probs=328.2
Q ss_pred CCCCCCCCCCCCCCc---ceeEecCCCCcEEEEEcCCCCCccccCCCcCCCCCCCEEEeeCCccc------c------cC
Q 002278 14 LLDWDDVHNSDFCSW---RGVFCDNSSLSVVSLNLSSLNLGGEISPSIGDLRNLQSIDFQGNKLT------G------QI 78 (943)
Q Consensus 14 ~~~w~~~~~~~~c~w---~gv~c~~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~------~------~~ 78 (943)
..+|+. ++|||.| .||.|+.. ++|+.|+|++++++|.+|++|+.|++|++|||++|.+. + .+
T Consensus 57 ~~~W~~--~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~ 133 (636)
T 4eco_A 57 GANWNF--NKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANM 133 (636)
T ss_dssp -CCCCC--SSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTC
T ss_pred CCCCCC--CCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCc
Confidence 458985 6899999 99999876 79999999999999999999999999999999999873 2 23
Q ss_pred CCCccCCCCCcEEeccCCCcCCccchhccc-cccceEEEec--------------------CcccccCCCcccCCCCCCc
Q 002278 79 PDEIGNCGSLVHIELSDNSLYGDIPFSISK-LKQLEFLNLK--------------------NNQLTGPIPSTLTQIPNLK 137 (943)
Q Consensus 79 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~Ls--------------------~n~l~~~~~~~~~~l~~L~ 137 (943)
|... +..|+ +++++|.+.+..|..+.. +.++..+++. +|++++ +|..|+++++|+
T Consensus 134 ~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~ 209 (636)
T 4eco_A 134 SDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLR 209 (636)
T ss_dssp CHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCC
T ss_pred hHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCC
Confidence 3222 45667 888888888777776663 2333333333 455555 566666666666
Q ss_pred EEEEeccccccc-cchhccccccceeccccCCccCCCCCcccc--cccccceeeccceecccccCCCCcCCCcccEEEee
Q 002278 138 TLDLARNQLTGE-IPRLIYWNEVLQYLGLRGNALTGMLSPDMC--QLTGLWYFDVRGNNLTGTIPDSIGNCTSFEILDIS 214 (943)
Q Consensus 138 ~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls 214 (943)
+|+|++|++++. ++.. +. .-+.+...+..|..++ ++++|++|+|++|++.+.+|..|+++++|++|+|+
T Consensus 210 ~L~Ls~n~l~~~~~~~~--~~------~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls 281 (636)
T 4eco_A 210 QFYMGNSPFVAENICEA--WE------NENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281 (636)
T ss_dssp EEEEESCCCCGGGBSSS--CS------CTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECT
T ss_pred EEECcCCcccccccccc--cc------ccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECc
Confidence 666666666543 0000 00 0000000000333444 45555555555555555555555555555555555
Q ss_pred ccc-ccC-cCCCCCCc-------ceEeEEEecCccccccCCc--cccccCCCcEEecCCCCCCCCCCcccCCCCCcceEE
Q 002278 215 YNQ-ITG-EIPYNIGF-------LQVATLSLQGNKLTGKIPE--VIGLMQALAVLDLSENELVGPIPPILGNLSYTGKLY 283 (943)
Q Consensus 215 ~N~-l~~-~~~~~~~~-------~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 283 (943)
+|+ +++ .+|..++. .+|+.|++++|+++ .+|. .++.+++|++|++++|.+.+.+| .|..+++|+.|+
T Consensus 282 ~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~ 359 (636)
T 4eco_A 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLN 359 (636)
T ss_dssp TCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEE
T ss_pred CCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEE
Confidence 554 444 44433322 34555555555555 4566 67777778888888887776667 777777788888
Q ss_pred ecCCCCCCCCCCCcCCCCc-CcEEEcccCccccccccccCCcc--cceEEEccccccCCcCccccc-------CCCcCcE
Q 002278 284 LHGNKLTGPIPPELGNMSK-LSYLQLQNNQLVGTIPAELGKLE--QLFELNLADNNLEGPIPHNIS-------SCTALNQ 353 (943)
Q Consensus 284 L~~n~l~~~~~~~~~~l~~-L~~L~L~~N~l~~~~~~~~~~l~--~L~~L~L~~N~l~~~~p~~~~-------~l~~L~~ 353 (943)
|++|+++ .+|..+..+++ |++|++++|+++ .+|..+..++ +|+.|++++|++.+.+|..|. .+++|++
T Consensus 360 L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~ 437 (636)
T 4eco_A 360 LAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSS 437 (636)
T ss_dssp CCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEE
T ss_pred CCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCE
Confidence 8888777 66777777777 888888888877 6676666654 788888888888877777777 6778888
Q ss_pred EEeeCCcccCcccccccccCccceeeccCCcCCCCCCCCC-CCCC-------CccEEecCCCcCCCccCCCcc--ccccc
Q 002278 354 FNVHGNRLSGAIPSSFRNLGSLTYLNLSRNNFKGKVPTEL-GRII-------NLDTLDLSVNNFSGSVPASIG--DLEHL 423 (943)
Q Consensus 354 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~-------~L~~L~Ls~N~l~~~~~~~~~--~l~~L 423 (943)
|+|++|+++.+.+..+..+++|+.|+|++|+++ .+|..+ .... +|+.|+|++|+++ .+|..+. .+++|
T Consensus 438 L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L 515 (636)
T 4eco_A 438 INLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYL 515 (636)
T ss_dssp EECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTC
T ss_pred EECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCc
Confidence 888888887555555666788888888888887 444433 3222 7888888888888 6777776 88888
Q ss_pred ceeecccccccccCCccccCCCccceecc------cCccccccCChhhhcccccceecccCcccCCCCCCcCccccCCcc
Q 002278 424 LTLNLSRNHLNGLLPAEFGNLRSIQTIDM------SFNQLSGSIPAELGQLQNIISLILNNNNLQGGIPDQLSNCFSLSN 497 (943)
Q Consensus 424 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L------s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 497 (943)
+.|+|++|++++ +|..+.++++|+.|+| ++|++.+.+|..+..+++|+.|+|++|++ +.+|..+. ++|+.
T Consensus 516 ~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~ 591 (636)
T 4eco_A 516 VGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISV 591 (636)
T ss_dssp CEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCE
T ss_pred CEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCE
Confidence 888888888886 7788888888888888 56888889999999999999999999999 57787766 79999
Q ss_pred cccCCccccccC
Q 002278 498 LNVSYNNLSGII 509 (943)
Q Consensus 498 L~ls~N~l~~~~ 509 (943)
|||++|++..+.
T Consensus 592 L~Ls~N~l~~~~ 603 (636)
T 4eco_A 592 LDIKDNPNISID 603 (636)
T ss_dssp EECCSCTTCEEE
T ss_pred EECcCCCCcccc
Confidence 999999887654
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.6e-54 Score=520.81 Aligned_cols=483 Identities=18% Similarity=0.192 Sum_probs=436.0
Q ss_pred EEEcCCCCCccccCCCcCCCCCCCEEEeeCCcccccCCCCccCCCCCcEEeccCCCcCCccchhccccccceEEEecCcc
Q 002278 42 SLNLSSLNLGGEISPSIGDLRNLQSIDFQGNKLTGQIPDEIGNCGSLVHIELSDNSLYGDIPFSISKLKQLEFLNLKNNQ 121 (943)
Q Consensus 42 ~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~ 121 (943)
.++.++.+++ .+|..+.. .+++|||++|+|++..|..|+++++|++|+|++|++++..|.+|+++++|++|+|++|+
T Consensus 16 ~~~c~~~~l~-~iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 92 (606)
T 3t6q_A 16 TYNCENLGLN-EIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92 (606)
T ss_dssp EEECTTSCCS-SCCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEECCCCCcc-cCcCCCCC--cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCc
Confidence 5889999998 78887764 79999999999998889999999999999999999998889999999999999999999
Q ss_pred cccCCCcccCCCCCCcEEEEeccccccccchhccccccceeccccCCccCCCCCcccccccccceeeccceecccccCCC
Q 002278 122 LTGPIPSTLTQIPNLKTLDLARNQLTGEIPRLIYWNEVLQYLGLRGNALTGMLSPDMCQLTGLWYFDVRGNNLTGTIPDS 201 (943)
Q Consensus 122 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~ 201 (943)
+++..|..|.++++|++|+|++|++++..+..+..+++|++|+|++|+++++..+.+..+++|++|++++|++++..+..
T Consensus 93 l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 172 (606)
T 3t6q_A 93 LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKED 172 (606)
T ss_dssp CSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHH
T ss_pred ccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhh
Confidence 99899999999999999999999999877889999999999999999999987777777999999999999999888889
Q ss_pred CcCCCccc--EEEeecccccCcCCCCCCcceEeEEEecCcccc--------------------------ccCCccccccC
Q 002278 202 IGNCTSFE--ILDISYNQITGEIPYNIGFLQVATLSLQGNKLT--------------------------GKIPEVIGLMQ 253 (943)
Q Consensus 202 l~~l~~L~--~L~Ls~N~l~~~~~~~~~~~~L~~L~L~~n~l~--------------------------~~~~~~l~~l~ 253 (943)
|+.+++|+ .|++++|++++..|..+...+++.|++++|... ...+..+..+.
T Consensus 173 ~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~ 252 (606)
T 3t6q_A 173 MSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLC 252 (606)
T ss_dssp HHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGG
T ss_pred hhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhh
Confidence 99999999 999999999999998888889999999988511 11122233332
Q ss_pred --CCcEEecCCCCCCCCCCcccCCCCCcceEEecCCCCCCCCCCCcCCCCcCcEEEcccCccccccccccCCcccceEEE
Q 002278 254 --ALAVLDLSENELVGPIPPILGNLSYTGKLYLHGNKLTGPIPPELGNMSKLSYLQLQNNQLVGTIPAELGKLEQLFELN 331 (943)
Q Consensus 254 --~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 331 (943)
+|+.|++++|.+.+..+..|..+++|++|++++|.++ .+|..+..+++|++|++++|++.+..|..+..+++|++|+
T Consensus 253 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 331 (606)
T 3t6q_A 253 EMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLS 331 (606)
T ss_dssp GSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEE
T ss_pred cCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEE
Confidence 7899999999999988889999999999999999999 6788999999999999999999988899999999999999
Q ss_pred ccccccCCcCcc-cccCCCcCcEEEeeCCcccCcc--cccccccCccceeeccCCcCCCCCCCCCCCCCCccEEecCCCc
Q 002278 332 LADNNLEGPIPH-NISSCTALNQFNVHGNRLSGAI--PSSFRNLGSLTYLNLSRNNFKGKVPTELGRIINLDTLDLSVNN 408 (943)
Q Consensus 332 L~~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 408 (943)
+++|.+.+.+|. .+..+++|++|++++|.+++.. +..+..+++|++|++++|++.+..|..+..+++|+.|++++|+
T Consensus 332 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 411 (606)
T 3t6q_A 332 IKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR 411 (606)
T ss_dssp CCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCC
T ss_pred CCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCc
Confidence 999999866554 5999999999999999999776 7889999999999999999998899999999999999999999
Q ss_pred CCCccCCC-cccccccceeecccccccccCCccccCCCccceecccCcccccc---CChhhhcccccceecccCcccCCC
Q 002278 409 FSGSVPAS-IGDLEHLLTLNLSRNHLNGLLPAEFGNLRSIQTIDMSFNQLSGS---IPAELGQLQNIISLILNNNNLQGG 484 (943)
Q Consensus 409 l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~---~p~~~~~l~~L~~L~L~~N~l~~~ 484 (943)
+.+..+.. +..+++|+.|++++|.+++..|..|..+++|++|+|++|++++. .+..+..+++|+.|+|++|++++.
T Consensus 412 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 491 (606)
T 3t6q_A 412 LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI 491 (606)
T ss_dssp EECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEE
T ss_pred CCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCcc
Confidence 98776654 89999999999999999999999999999999999999999872 346799999999999999999999
Q ss_pred CCCcCccccCCcccccCCccccccCCC-CcccCcCCCCccccCCCC
Q 002278 485 IPDQLSNCFSLSNLNVSYNNLSGIIPP-IRNFSRFSSNSFIGNPLL 529 (943)
Q Consensus 485 ~p~~~~~l~~L~~L~ls~N~l~~~~~~-~~~~~~~~~~~~~~Np~~ 529 (943)
.|..+..+++|+.|+|++|++++.+|. +..+..+ .+.+.+|...
T Consensus 492 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~ 536 (606)
T 3t6q_A 492 DQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHIS 536 (606)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCC
T ss_pred ChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCccc
Confidence 999999999999999999999998774 3445555 5667777643
No 9
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.8e-55 Score=534.26 Aligned_cols=450 Identities=20% Similarity=0.276 Sum_probs=289.3
Q ss_pred CcccccccCccccCCCCCCCC---CCCC--CCc------------ceeEecCCCCcEEEEEcCCCCCccccCCCcCCCCC
Q 002278 1 MAIKASFSNLANVLLDWDDVH---NSDF--CSW------------RGVFCDNSSLSVVSLNLSSLNLGGEISPSIGDLRN 63 (943)
Q Consensus 1 ~~~~~~~~~~~~~~~~w~~~~---~~~~--c~w------------~gv~c~~~~~~v~~L~l~~~~~~~~~~~~l~~l~~ 63 (943)
++||+++.|| +|.... ..+| |+| .||.|+. .++|+.|+|+++++.|.+|++|++|++
T Consensus 275 l~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~G~ip~~l~~L~~ 348 (876)
T 4ecn_A 275 KAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKGRVPDAIGQLTE 348 (876)
T ss_dssp HHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCEEEECGGGGGCTT
T ss_pred HHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCCCcCchHHhcccc
Confidence 3689999886 897532 2356 999 9999987 589999999999999999999999999
Q ss_pred CCEEEe-eCCcccccCCCCc---------------------------------------------------cCCCCCcEE
Q 002278 64 LQSIDF-QGNKLTGQIPDEI---------------------------------------------------GNCGSLVHI 91 (943)
Q Consensus 64 L~~L~L-s~n~l~~~~p~~~---------------------------------------------------~~l~~L~~L 91 (943)
|++||| ++|.++|..|-.. .....++.+
T Consensus 349 L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l 428 (876)
T 4ecn_A 349 LKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDT 428 (876)
T ss_dssp CCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTT
T ss_pred ceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccccccccchhhc
Confidence 999999 8898887644221 112233444
Q ss_pred eccC--CCcCCccchhccccccceEEEecCccccc-----------------CCCcccC--CCCCCcEEEEecccccccc
Q 002278 92 ELSD--NSLYGDIPFSISKLKQLEFLNLKNNQLTG-----------------PIPSTLT--QIPNLKTLDLARNQLTGEI 150 (943)
Q Consensus 92 ~Ls~--N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~-----------------~~~~~~~--~l~~L~~L~Ls~N~l~~~~ 150 (943)
.+.. |++++ +|..|+++++|++|+|++|++++ .+|..++ ++++|++|+|++|++.+.+
T Consensus 429 ~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~i 507 (876)
T 4ecn_A 429 QIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQL 507 (876)
T ss_dssp TTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSC
T ss_pred eeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccC
Confidence 4443 77775 77778888888888888888876 2677766 7777777777777777777
Q ss_pred chhccccccceeccccCCc-cCC-CCCccccccc-------ccceeeccceecccccCC--CCcCCCcccEEEeeccccc
Q 002278 151 PRLIYWNEVLQYLGLRGNA-LTG-MLSPDMCQLT-------GLWYFDVRGNNLTGTIPD--SIGNCTSFEILDISYNQIT 219 (943)
Q Consensus 151 ~~~~~~l~~L~~L~L~~n~-l~~-~~~~~~~~l~-------~L~~L~L~~N~i~~~~~~--~l~~l~~L~~L~Ls~N~l~ 219 (943)
|..|..+++|++|+|++|+ +++ ..|..+..++ +|++|+|++|+++ .+|. .|+++++|++|+|++|+++
T Consensus 508 P~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~ 586 (876)
T 4ecn_A 508 PDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR 586 (876)
T ss_dssp CGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC
T ss_pred hHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc
Confidence 7777777777777777776 665 4455555544 7777777777777 5666 6777777777777777766
Q ss_pred CcCCCCCCcceEeEEEecCccccccCCccccccCCCcEEecCCCCCCCCCCcccCCCCC-cceEEecCCCCCCCCCCCcC
Q 002278 220 GEIPYNIGFLQVATLSLQGNKLTGKIPEVIGLMQALAVLDLSENELVGPIPPILGNLSY-TGKLYLHGNKLTGPIPPELG 298 (943)
Q Consensus 220 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~ 298 (943)
.+| .|+.+++|+.|+|++|.+. .+|..+..+++ |+.|+|++|+++ .+|..+.
T Consensus 587 -~lp------------------------~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~ 639 (876)
T 4ecn_A 587 -HLE------------------------AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFN 639 (876)
T ss_dssp -BCC------------------------CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCC
T ss_pred -cch------------------------hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhh
Confidence 444 3444445555555555554 44444555555 555555555555 3444444
Q ss_pred CCCc--CcEEEcccCcccccccccc---C--CcccceEEEccccccCCcCcccccCCCcCcEEEeeCCcccCccccccc-
Q 002278 299 NMSK--LSYLQLQNNQLVGTIPAEL---G--KLEQLFELNLADNNLEGPIPHNISSCTALNQFNVHGNRLSGAIPSSFR- 370 (943)
Q Consensus 299 ~l~~--L~~L~L~~N~l~~~~~~~~---~--~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~- 370 (943)
.++. |+.|+|++|++.+.+|... . .+++|+.|+|++|+++.+.+..+..+++|+.|+|++|+|+.+.+..+.
T Consensus 640 ~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~ 719 (876)
T 4ecn_A 640 AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKP 719 (876)
T ss_dssp TTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSC
T ss_pred ccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhcc
Confidence 4432 5555555555554433221 1 223566666666666643333344566666666666666633332332
Q ss_pred ------ccCccceeeccCCcCCCCCCCCCC--CCCCccEEecCCCcCCCccCCCcccccccceeecccccccccCCcccc
Q 002278 371 ------NLGSLTYLNLSRNNFKGKVPTELG--RIINLDTLDLSVNNFSGSVPASIGDLEHLLTLNLSRNHLNGLLPAEFG 442 (943)
Q Consensus 371 ------~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 442 (943)
++++|+.|+|++|+++ .+|..+. .+++|+.|+|++|+|++ +|..+..+++|+.|+|++|+
T Consensus 720 ~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~---------- 787 (876)
T 4ecn_A 720 KDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR---------- 787 (876)
T ss_dssp TTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB----------
T ss_pred ccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC----------
Confidence 2237777777777777 5666665 77777777777777775 67777777777777777654
Q ss_pred CCCccceecccCccccccCChhhhcccccceecccCcccCCCCCCcCccccCCcccccCCcccccc
Q 002278 443 NLRSIQTIDMSFNQLSGSIPAELGQLQNIISLILNNNNLQGGIPDQLSNCFSLSNLNVSYNNLSGI 508 (943)
Q Consensus 443 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~ 508 (943)
++++|++.+.+|..|..+++|+.|+|++|+| +.+|..+. ++|+.|||++|++..+
T Consensus 788 --------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i 842 (876)
T 4ecn_A 788 --------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISI 842 (876)
T ss_dssp --------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEE
T ss_pred --------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCcc
Confidence 4445555555555555555555555555555 34444433 3555555555555443
No 10
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=6.6e-54 Score=522.55 Aligned_cols=482 Identities=22% Similarity=0.257 Sum_probs=339.5
Q ss_pred EEEcCCCCCccccCCCcCCCCCCCEEEeeCCcccccCCCCccCCCCCcEEeccCCCcCCccchhccccccceEEEecCcc
Q 002278 42 SLNLSSLNLGGEISPSIGDLRNLQSIDFQGNKLTGQIPDEIGNCGSLVHIELSDNSLYGDIPFSISKLKQLEFLNLKNNQ 121 (943)
Q Consensus 42 ~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~ 121 (943)
.+|.++++++ .+|..+. +++++|+|++|+|++..+..|.++++|++|+|++|++++..|.+|+++++|++|+|++|+
T Consensus 8 ~~~cs~~~L~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 84 (680)
T 1ziw_A 8 VADCSHLKLT-QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84 (680)
T ss_dssp EEECCSSCCS-SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred eeECCCCCcc-ccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc
Confidence 5899999998 7887775 799999999999998777789999999999999999998889999999999999999999
Q ss_pred cccCCCcccCCCCCCcEEEEeccccccccchhccccccceeccccCCccCCCCCcccccccccceeeccceecccccCCC
Q 002278 122 LTGPIPSTLTQIPNLKTLDLARNQLTGEIPRLIYWNEVLQYLGLRGNALTGMLSPDMCQLTGLWYFDVRGNNLTGTIPDS 201 (943)
Q Consensus 122 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~ 201 (943)
+++..+..|.++++|++|+|++|++++..|..|..+++|++|+|++|.++++.+..+..+++|++|++++|++++..+..
T Consensus 85 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 164 (680)
T 1ziw_A 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEE 164 (680)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHH
T ss_pred cCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHH
Confidence 99766678999999999999999999888899999999999999999999999999999999999999999999877765
Q ss_pred Cc--CCCcccEEEeecccccCcCCCCCCc----------------------------ceEeEEEecCccccccCCccccc
Q 002278 202 IG--NCTSFEILDISYNQITGEIPYNIGF----------------------------LQVATLSLQGNKLTGKIPEVIGL 251 (943)
Q Consensus 202 l~--~l~~L~~L~Ls~N~l~~~~~~~~~~----------------------------~~L~~L~L~~n~l~~~~~~~l~~ 251 (943)
+. .+++|++|++++|++++..|..+.. .+++.|++++|.+.+..|..|..
T Consensus 165 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~ 244 (680)
T 1ziw_A 165 LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLG 244 (680)
T ss_dssp HGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGG
T ss_pred hhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhc
Confidence 54 5689999999999999877754431 45788999999999999999988
Q ss_pred cCC--CcEEecCCCCCCCCCCcccCCCCCcceEEecCCCCCCCCCCCcCCCCcCcEEEcccCcccc-----ccc----cc
Q 002278 252 MQA--LAVLDLSENELVGPIPPILGNLSYTGKLYLHGNKLTGPIPPELGNMSKLSYLQLQNNQLVG-----TIP----AE 320 (943)
Q Consensus 252 l~~--L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-----~~~----~~ 320 (943)
++. |+.|+|++|.+.+..|..|..+++|++|+|++|++++..|..|.++++|++|++++|...+ .+| ..
T Consensus 245 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~ 324 (680)
T 1ziw_A 245 LKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFS 324 (680)
T ss_dssp GGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTT
T ss_pred cCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhh
Confidence 765 9999999999999888999999999999999999998777666665555555555443221 111 13
Q ss_pred cCCcccceEEEccccccCCcCcccccCCCcCcEE----------------------------EeeCCcccCccccccccc
Q 002278 321 LGKLEQLFELNLADNNLEGPIPHNISSCTALNQF----------------------------NVHGNRLSGAIPSSFRNL 372 (943)
Q Consensus 321 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L----------------------------~L~~N~l~~~~~~~~~~l 372 (943)
|..+++|++|++++|++.+..+..|.++++|++| ++++|++++..|.+|..+
T Consensus 325 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l 404 (680)
T 1ziw_A 325 FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWL 404 (680)
T ss_dssp TTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTC
T ss_pred cccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCC
Confidence 3344444444444444444433333333333333 333344444445555555
Q ss_pred CccceeeccCCcCCCCCC-CCCCCCCCccEEecCCCcCCCc--------------------------cCCCcccccccce
Q 002278 373 GSLTYLNLSRNNFKGKVP-TELGRIINLDTLDLSVNNFSGS--------------------------VPASIGDLEHLLT 425 (943)
Q Consensus 373 ~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~--------------------------~~~~~~~l~~L~~ 425 (943)
++|+.|+|++|.+++.+| ..+..+++|+.|++++|++.+. .|..|..+++|+.
T Consensus 405 ~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~ 484 (680)
T 1ziw_A 405 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTI 484 (680)
T ss_dssp TTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCE
T ss_pred CCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCE
Confidence 666666666666554333 4455555555555555555444 4444555555555
Q ss_pred eecccccccccCCccccCCCccceecccCccccccCC--------hhhhcccccceecccCcccCCCCCCcCccccCCcc
Q 002278 426 LNLSRNHLNGLLPAEFGNLRSIQTIDMSFNQLSGSIP--------AELGQLQNIISLILNNNNLQGGIPDQLSNCFSLSN 497 (943)
Q Consensus 426 L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p--------~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 497 (943)
|+|++|+++++.+..|.++++|+.|+|++|++++..+ ..|..+++|+.|+|++|+++...+..|.++++|+.
T Consensus 485 L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~ 564 (680)
T 1ziw_A 485 LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKI 564 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred EECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcce
Confidence 5555555555444455555555555555555543211 12455555555555555555333334555555555
Q ss_pred cccCCccccccCCCC-cccCcCCCCccccC
Q 002278 498 LNVSYNNLSGIIPPI-RNFSRFSSNSFIGN 526 (943)
Q Consensus 498 L~ls~N~l~~~~~~~-~~~~~~~~~~~~~N 526 (943)
|+|++|+|+++++.. ..+..+..+.+.+|
T Consensus 565 L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N 594 (680)
T 1ziw_A 565 IDLGLNNLNTLPASVFNNQVSLKSLNLQKN 594 (680)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred eECCCCCCCcCCHhHhCCCCCCCEEECCCC
Confidence 555555555544432 23344444444444
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5.7e-53 Score=507.32 Aligned_cols=476 Identities=20% Similarity=0.159 Sum_probs=430.4
Q ss_pred EEEcCCCCCccccCCCcCCCCCCCEEEeeCCcccccCCCCccCCCCCcEEeccCCCcCCccchhccccccceEEEecCcc
Q 002278 42 SLNLSSLNLGGEISPSIGDLRNLQSIDFQGNKLTGQIPDEIGNCGSLVHIELSDNSLYGDIPFSISKLKQLEFLNLKNNQ 121 (943)
Q Consensus 42 ~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~ 121 (943)
.++.++++++ .+|..+. ++|++|+|++|+|++..+..|.++++|++|+|++|++++..|.+|+++++|++|+|++|+
T Consensus 15 ~~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~ 91 (606)
T 3vq2_A 15 TYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91 (606)
T ss_dssp EEECTTSCCS-SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred ceEccCCCcc-cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCc
Confidence 5899999999 7888765 789999999999998888899999999999999999998778899999999999999999
Q ss_pred cccCCCcccCCCCCCcEEEEeccccccccchhccccccceeccccCCccCCCC-CcccccccccceeeccceecccccCC
Q 002278 122 LTGPIPSTLTQIPNLKTLDLARNQLTGEIPRLIYWNEVLQYLGLRGNALTGML-SPDMCQLTGLWYFDVRGNNLTGTIPD 200 (943)
Q Consensus 122 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~i~~~~~~ 200 (943)
+++..|..|.++++|++|+|++|++++..+..+..+++|++|++++|.++++. |..+.++++|++|++++|++++..+.
T Consensus 92 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~ 171 (606)
T 3vq2_A 92 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN 171 (606)
T ss_dssp CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTT
T ss_pred ccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChh
Confidence 99888999999999999999999999888889999999999999999999854 88999999999999999999998888
Q ss_pred CCcCCCccc----EEEeecccccCcCCCCCCcceEeEEEecCcccc-ccCCccccccCCCcEEec---------------
Q 002278 201 SIGNCTSFE----ILDISYNQITGEIPYNIGFLQVATLSLQGNKLT-GKIPEVIGLMQALAVLDL--------------- 260 (943)
Q Consensus 201 ~l~~l~~L~----~L~Ls~N~l~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L--------------- 260 (943)
.|+.+++|+ +|++++|++++..+..+...+|+.|++++|.+. +..|..+..+++|+.+++
T Consensus 172 ~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~ 251 (606)
T 3vq2_A 172 DLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFE 251 (606)
T ss_dssp TTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCC
T ss_pred hhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccC
Confidence 898888776 899999999988777787789999999999986 456677777888777766
Q ss_pred ------------------CCCCCCCCCCcccCCCCCcceEEecCCCCCCCCCCCcCCCCcCcEEEcccCccccccccccC
Q 002278 261 ------------------SENELVGPIPPILGNLSYTGKLYLHGNKLTGPIPPELGNMSKLSYLQLQNNQLVGTIPAELG 322 (943)
Q Consensus 261 ------------------s~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 322 (943)
..|.+.+..|. +..+++|+.|++++|.++. +| .+..+++|++|++++|.+ +.+| .+
T Consensus 252 ~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp-~~- 325 (606)
T 3vq2_A 252 PSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFP-TL- 325 (606)
T ss_dssp GGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCC-CC-
T ss_pred hHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC-cccc-cC-
Confidence 66677776666 8899999999999999985 55 899999999999999999 4777 45
Q ss_pred CcccceEEEccccccCCcCcccccCCCcCcEEEeeCCcccCc--ccccccccCccceeeccCCcCCCCCCCCCCCCCCcc
Q 002278 323 KLEQLFELNLADNNLEGPIPHNISSCTALNQFNVHGNRLSGA--IPSSFRNLGSLTYLNLSRNNFKGKVPTELGRIINLD 400 (943)
Q Consensus 323 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 400 (943)
.+++|++|++++|+..+.. .+..+++|++|++++|++++. .+..+..+++|++|++++|.+++ +|..+..+++|+
T Consensus 326 ~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~ 402 (606)
T 3vq2_A 326 DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQ 402 (606)
T ss_dssp CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCC
T ss_pred CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCC
Confidence 9999999999999665433 678999999999999999876 38889999999999999999984 678899999999
Q ss_pred EEecCCCcCCCccC-CCcccccccceeecccccccccCCccccCCCccceecccCccccc-cCChhhhcccccceecccC
Q 002278 401 TLDLSVNNFSGSVP-ASIGDLEHLLTLNLSRNHLNGLLPAEFGNLRSIQTIDMSFNQLSG-SIPAELGQLQNIISLILNN 478 (943)
Q Consensus 401 ~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~L~~ 478 (943)
.|++++|++.+..| ..+..+++|+.|++++|++++..|..|.++++|++|+|++|++++ .+|..|+.+++|+.|+|++
T Consensus 403 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~ 482 (606)
T 3vq2_A 403 HLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSK 482 (606)
T ss_dssp EEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred eeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCC
Confidence 99999999998777 689999999999999999999999999999999999999999997 4799999999999999999
Q ss_pred cccCCCCCCcCccccCCcccccCCccccccCCC-CcccCcCCCCccccCCCC
Q 002278 479 NNLQGGIPDQLSNCFSLSNLNVSYNNLSGIIPP-IRNFSRFSSNSFIGNPLL 529 (943)
Q Consensus 479 N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~-~~~~~~~~~~~~~~Np~~ 529 (943)
|++++..|..+..+++|+.|++++|++++.+|. +..+..+..+.+.+|...
T Consensus 483 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 483 CQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred CcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence 999999999999999999999999999998664 456777888888898743
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-52 Score=500.43 Aligned_cols=467 Identities=19% Similarity=0.186 Sum_probs=417.1
Q ss_pred CcEEEEEcCCCCCccccCCCcCCCCCCCEEEeeCCcccccCCCCccCCCCCcEEeccCCCcCCccchhccccccceEEEe
Q 002278 38 LSVVSLNLSSLNLGGEISPSIGDLRNLQSIDFQGNKLTGQIPDEIGNCGSLVHIELSDNSLYGDIPFSISKLKQLEFLNL 117 (943)
Q Consensus 38 ~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 117 (943)
.+++.|+|++|++++..+.+|.++++|++|||++|+|++..|+.|.++++|++|+|++|++++..|.+|+++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 35889999999999877889999999999999999999888889999999999999999999777789999999999999
Q ss_pred cCcccccCCCcccCCCCCCcEEEEecccccc-ccchhccccccceeccccCCccCCCCCccccccccc----ceeeccce
Q 002278 118 KNNQLTGPIPSTLTQIPNLKTLDLARNQLTG-EIPRLIYWNEVLQYLGLRGNALTGMLSPDMCQLTGL----WYFDVRGN 192 (943)
Q Consensus 118 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L----~~L~L~~N 192 (943)
++|++++..+..|+++++|++|+|++|.+++ .+|..|..+++|++|++++|+++++.+..+..+.+| +.|++++|
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n 187 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence 9999997766689999999999999999986 469999999999999999999999999999999999 89999999
Q ss_pred ecccccCCCCcCCCcccEEEeecccccC------------------------------cCC-C---CCCcceEeEEEecC
Q 002278 193 NLTGTIPDSIGNCTSFEILDISYNQITG------------------------------EIP-Y---NIGFLQVATLSLQG 238 (943)
Q Consensus 193 ~i~~~~~~~l~~l~~L~~L~Ls~N~l~~------------------------------~~~-~---~~~~~~L~~L~L~~ 238 (943)
.+++..|..+..+ +|+.|++++|.... .++ . ......++.+++.+
T Consensus 188 ~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~ 266 (570)
T 2z63_A 188 PMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266 (570)
T ss_dssp CCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEE
T ss_pred CceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhc
Confidence 9998888888776 89999999984221 011 1 11233678888888
Q ss_pred c-cccccCCccccccCCCcEEecCCCCCCCCCCcccCCCCCcceEEecCCCCCCCCCCCcCCCCcCcEEEcccCcccccc
Q 002278 239 N-KLTGKIPEVIGLMQALAVLDLSENELVGPIPPILGNLSYTGKLYLHGNKLTGPIPPELGNMSKLSYLQLQNNQLVGTI 317 (943)
Q Consensus 239 n-~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 317 (943)
+ .+.+..|+.+..+++|+.|++++|.+. .+|..+..+ +|+.|++++|.++ .+|. ..+++|+.|++++|.+.+..
T Consensus 267 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~ 341 (570)
T 2z63_A 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAF 341 (570)
T ss_dssp TTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBC
T ss_pred chhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccc
Confidence 8 788888999999999999999999998 578888888 9999999999999 4554 57899999999999998666
Q ss_pred ccccCCcccceEEEccccccCCcC--cccccCCCcCcEEEeeCCcccCcccccccccCccceeeccCCcCCCCCC-CCCC
Q 002278 318 PAELGKLEQLFELNLADNNLEGPI--PHNISSCTALNQFNVHGNRLSGAIPSSFRNLGSLTYLNLSRNNFKGKVP-TELG 394 (943)
Q Consensus 318 ~~~~~~l~~L~~L~L~~N~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~ 394 (943)
+. ..+++|++|++++|++++.. |..+..+++|++|++++|.+.+..+. |..+++|+.|++++|.+++..+ ..+.
T Consensus 342 ~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~ 418 (570)
T 2z63_A 342 SE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFL 418 (570)
T ss_dssp CC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTT
T ss_pred cc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhh
Confidence 55 78899999999999998664 77889999999999999999966555 9999999999999999987766 5789
Q ss_pred CCCCccEEecCCCcCCCccCCCcccccccceeeccccccc-ccCCccccCCCccceecccCccccccCChhhhcccccce
Q 002278 395 RIINLDTLDLSVNNFSGSVPASIGDLEHLLTLNLSRNHLN-GLLPAEFGNLRSIQTIDMSFNQLSGSIPAELGQLQNIIS 473 (943)
Q Consensus 395 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 473 (943)
.+++|+.|++++|.+.+..|..|.++++|+.|+|++|+++ +.+|..|..+++|++|+|++|++++..|..|..+++|+.
T Consensus 419 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 498 (570)
T 2z63_A 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498 (570)
T ss_dssp TCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred cCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCE
Confidence 9999999999999999889999999999999999999998 578999999999999999999999888999999999999
Q ss_pred ecccCcccCCCCCCcCccccCCcccccCCccccccCCCCc
Q 002278 474 LILNNNNLQGGIPDQLSNCFSLSNLNVSYNNLSGIIPPIR 513 (943)
Q Consensus 474 L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~ 513 (943)
|+|++|++++.+|..+.++++|+.|++++|++++..|...
T Consensus 499 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~ 538 (570)
T 2z63_A 499 LNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 538 (570)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred EeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchH
Confidence 9999999999888889999999999999999999888643
No 13
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2e-51 Score=510.40 Aligned_cols=474 Identities=18% Similarity=0.158 Sum_probs=410.5
Q ss_pred EEEcCCCCCccccCCCcCCCCCCCEEEeeCCcccccCCCCccCCCCCcEEeccCCCcCCcc-chhccccccceEEEecCc
Q 002278 42 SLNLSSLNLGGEISPSIGDLRNLQSIDFQGNKLTGQIPDEIGNCGSLVHIELSDNSLYGDI-PFSISKLKQLEFLNLKNN 120 (943)
Q Consensus 42 ~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~Ls~n 120 (943)
..|.++++++ .+|. -.++|++|||++|+|++..|..|.++++|++|+|++|.+.+.+ |.+|+++++|++|+|++|
T Consensus 8 ~~dcs~~~L~-~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N 83 (844)
T 3j0a_A 8 IAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83 (844)
T ss_dssp EEEESCCCSS-CCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred EEEccCCCCC-CCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence 3556677788 6776 4579999999999999888999999999999999999766566 788999999999999999
Q ss_pred ccccCCCcccCCCCCCcEEEEeccccccccchh--ccccccceeccccCCccCCCCC-cccccccccceeeccceecccc
Q 002278 121 QLTGPIPSTLTQIPNLKTLDLARNQLTGEIPRL--IYWNEVLQYLGLRGNALTGMLS-PDMCQLTGLWYFDVRGNNLTGT 197 (943)
Q Consensus 121 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~i~~~ 197 (943)
.+++..|..|.++++|++|+|++|.+++..|.. |..+++|++|+|++|.++++.+ ..|+++++|++|+|++|.+++.
T Consensus 84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~ 163 (844)
T 3j0a_A 84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV 163 (844)
T ss_dssp CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence 999999999999999999999999999766655 8999999999999999998865 5799999999999999999999
Q ss_pred cCCCCcCC--CcccEEEeecccccCcCCCCCC-------cceEeEEEecCccccccCCccccc-----------------
Q 002278 198 IPDSIGNC--TSFEILDISYNQITGEIPYNIG-------FLQVATLSLQGNKLTGKIPEVIGL----------------- 251 (943)
Q Consensus 198 ~~~~l~~l--~~L~~L~Ls~N~l~~~~~~~~~-------~~~L~~L~L~~n~l~~~~~~~l~~----------------- 251 (943)
.+..+..+ ++|+.|++++|.+.+..|..++ ...|+.|++++|.+++..+..+..
T Consensus 164 ~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~ 243 (844)
T 3j0a_A 164 CEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIM 243 (844)
T ss_dssp CSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCC
T ss_pred CHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccc
Confidence 89999888 8999999999999987775443 234999999999887766655432
Q ss_pred ---------------------cCCCcEEecCCCCCCCCCCcccCCCCCcceEEecCCCCCCCCCCCcCCCCcCcEEEccc
Q 002278 252 ---------------------MQALAVLDLSENELVGPIPPILGNLSYTGKLYLHGNKLTGPIPPELGNMSKLSYLQLQN 310 (943)
Q Consensus 252 ---------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 310 (943)
.++|+.|+|++|.+.+..+..|..+++|+.|+|++|++++..|..|..+++|++|+|++
T Consensus 244 ~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~ 323 (844)
T 3j0a_A 244 GAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY 323 (844)
T ss_dssp BCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEES
T ss_pred cccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCC
Confidence 26799999999999988888999999999999999999988888999999999999999
Q ss_pred CccccccccccCCcccceEEEccccccCCcCcccccCCCcCcEEEeeCCcccCcccccccccCccceeeccCCcCCCCCC
Q 002278 311 NQLVGTIPAELGKLEQLFELNLADNNLEGPIPHNISSCTALNQFNVHGNRLSGAIPSSFRNLGSLTYLNLSRNNFKGKVP 390 (943)
Q Consensus 311 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 390 (943)
|++++..|..|..+++|+.|+|++|++.++.+..|..+++|+.|+|++|.+++. ..+++|+.|++++|+++ .+|
T Consensus 324 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~ 397 (844)
T 3j0a_A 324 NLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TLP 397 (844)
T ss_dssp CCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-CCC
T ss_pred CCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-ccc
Confidence 999988889999999999999999999988888899999999999999999843 23788999999999998 555
Q ss_pred CCCCCCCCccEEecCCCcCCCccC-CCcccccccceeecccccccccCCc-cccCCCccceecccCcccc-----ccCCh
Q 002278 391 TELGRIINLDTLDLSVNNFSGSVP-ASIGDLEHLLTLNLSRNHLNGLLPA-EFGNLRSIQTIDMSFNQLS-----GSIPA 463 (943)
Q Consensus 391 ~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l~-----~~~p~ 463 (943)
.. ..+++.|++++|++++... ..+..+++|+.|+|++|++++..+. .+..+++|+.|+|++|.++ +..|.
T Consensus 398 ~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~ 474 (844)
T 3j0a_A 398 KI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWD 474 (844)
T ss_dssp CC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSS
T ss_pred cc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchh
Confidence 43 4578999999999985322 2356899999999999999976544 4667899999999999997 44567
Q ss_pred hhhcccccceecccCcccCCCCCCcCccccCCcccccCCccccccCCCCcccCcCCCCccccCCCC
Q 002278 464 ELGQLQNIISLILNNNNLQGGIPDQLSNCFSLSNLNVSYNNLSGIIPPIRNFSRFSSNSFIGNPLL 529 (943)
Q Consensus 464 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~~~~~~~~Np~~ 529 (943)
.|..+++|+.|+|++|+|++.+|..+..+++|+.|+|++|+|++++|.... ..+..+.+.+|...
T Consensus 475 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-~~L~~L~Ls~N~l~ 539 (844)
T 3j0a_A 475 VFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-ANLEILDISRNQLL 539 (844)
T ss_dssp CSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC-SCCCEEEEEEECCC
T ss_pred hhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh-ccccEEECCCCcCC
Confidence 789999999999999999999999999999999999999999998876543 66777777777643
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=9.4e-52 Score=493.18 Aligned_cols=480 Identities=19% Similarity=0.178 Sum_probs=421.6
Q ss_pred EEcCCCCCccccCCCcCCCCCCCEEEeeCCcccccCCCCccCCCCCcEEeccCCCcCCccchhccccccceEEEecCccc
Q 002278 43 LNLSSLNLGGEISPSIGDLRNLQSIDFQGNKLTGQIPDEIGNCGSLVHIELSDNSLYGDIPFSISKLKQLEFLNLKNNQL 122 (943)
Q Consensus 43 L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l 122 (943)
++-++.+++ .+|..+. +++++|||++|+|++..+..|.++++|++|+|++|++++..|..|+++++|++|+|++|++
T Consensus 12 ~~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 88 (570)
T 2z63_A 12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (570)
T ss_dssp EECCSSCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEeCCCCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcC
Confidence 344444555 6777654 5799999999999988888999999999999999999977788899999999999999999
Q ss_pred ccCCCcccCCCCCCcEEEEeccccccccchhccccccceeccccCCccCCC-CCcccccccccceeeccceecccccCCC
Q 002278 123 TGPIPSTLTQIPNLKTLDLARNQLTGEIPRLIYWNEVLQYLGLRGNALTGM-LSPDMCQLTGLWYFDVRGNNLTGTIPDS 201 (943)
Q Consensus 123 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~i~~~~~~~ 201 (943)
++..|..|.++++|++|+|++|++++..+..+..+++|++|++++|.++++ .|..|+.+++|++|++++|++++..+..
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~ 168 (570)
T 2z63_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168 (570)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGG
T ss_pred CccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHH
Confidence 988889999999999999999999977766799999999999999999986 4889999999999999999999888888
Q ss_pred CcCCCcc----cEEEeecccccCcCCCCCCcceEeEEEecCccccc-cCCcc----------------------------
Q 002278 202 IGNCTSF----EILDISYNQITGEIPYNIGFLQVATLSLQGNKLTG-KIPEV---------------------------- 248 (943)
Q Consensus 202 l~~l~~L----~~L~Ls~N~l~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~---------------------------- 248 (943)
++.+++| +.|++++|.+++..|..+...+|+.|++++|.... .++..
T Consensus 169 ~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~ 248 (570)
T 2z63_A 169 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 248 (570)
T ss_dssp GHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCT
T ss_pred ccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcch
Confidence 9999998 89999999999888888888899999999984321 11112
Q ss_pred --ccccC--CCcEEecCCC-CCCCCCCcccCCCCCcceEEecCCCCCCCCCCCcCCCCcCcEEEcccCccccccccccCC
Q 002278 249 --IGLMQ--ALAVLDLSEN-ELVGPIPPILGNLSYTGKLYLHGNKLTGPIPPELGNMSKLSYLQLQNNQLVGTIPAELGK 323 (943)
Q Consensus 249 --l~~l~--~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 323 (943)
+..+. .++.+++++| .+.+..|..|..+++|+.|++++|.++ .+|..+..+ +|+.|++++|.+. .+|. ..
T Consensus 249 ~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~ 323 (570)
T 2z63_A 249 SALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LK 323 (570)
T ss_dssp TTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CB
T ss_pred hhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--cc
Confidence 22222 2456666666 677778889999999999999999999 578888888 9999999999998 5554 57
Q ss_pred cccceEEEccccccCCcCcccccCCCcCcEEEeeCCcccCcc--cccccccCccceeeccCCcCCCCCCCCCCCCCCccE
Q 002278 324 LEQLFELNLADNNLEGPIPHNISSCTALNQFNVHGNRLSGAI--PSSFRNLGSLTYLNLSRNNFKGKVPTELGRIINLDT 401 (943)
Q Consensus 324 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 401 (943)
+++|+.|++++|.+.+..+. ..+++|++|++++|++++.. +..+..+++|++|++++|.+++..+. +..+++|+.
T Consensus 324 l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~ 400 (570)
T 2z63_A 324 LKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEH 400 (570)
T ss_dssp CSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCE
T ss_pred ccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCE
Confidence 88999999999999876665 78999999999999998654 77899999999999999999965444 999999999
Q ss_pred EecCCCcCCCccC-CCcccccccceeecccccccccCCccccCCCccceecccCcccc-ccCChhhhcccccceecccCc
Q 002278 402 LDLSVNNFSGSVP-ASIGDLEHLLTLNLSRNHLNGLLPAEFGNLRSIQTIDMSFNQLS-GSIPAELGQLQNIISLILNNN 479 (943)
Q Consensus 402 L~Ls~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L~~N 479 (943)
|++++|.+.+..| ..+..+++|++|++++|++++..|..|.++++|++|+|++|+++ +.+|..+..+++|+.|+|++|
T Consensus 401 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n 480 (570)
T 2z63_A 401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480 (570)
T ss_dssp EECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred EEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC
Confidence 9999999987666 57899999999999999999999999999999999999999998 579999999999999999999
Q ss_pred ccCCCCCCcCccccCCcccccCCccccccCCC-CcccCcCCCCccccCCCCCCCC
Q 002278 480 NLQGGIPDQLSNCFSLSNLNVSYNNLSGIIPP-IRNFSRFSSNSFIGNPLLCGNW 533 (943)
Q Consensus 480 ~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~-~~~~~~~~~~~~~~Np~~c~~~ 533 (943)
++++..|..+..+++|++|++++|++++.+|. +..+..+..+.+.+||+.|+++
T Consensus 481 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 481 QLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence 99998899999999999999999999999876 4667888888999999999864
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=4.5e-52 Score=493.40 Aligned_cols=474 Identities=19% Similarity=0.229 Sum_probs=378.1
Q ss_pred CCCcceeEecCCC-----------CcEEEEEcCCCCCccccCCCcCCCCCCCEEEeeCCcccccCCCCccCCCCCcEEec
Q 002278 25 FCSWRGVFCDNSS-----------LSVVSLNLSSLNLGGEISPSIGDLRNLQSIDFQGNKLTGQIPDEIGNCGSLVHIEL 93 (943)
Q Consensus 25 ~c~w~gv~c~~~~-----------~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 93 (943)
.|.|.|| |+... .+++.|+|++|++++..|.+|+++++|++|+|++|+|++..|+.|.++++|++|+|
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 81 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEEC
Confidence 4899998 87432 36889999999999877888999999999999999999888888999999999999
Q ss_pred cCCCcCCccchhccccccceEEEecCcccccC-CCcccCCCCCCcEEEEeccc-cccccchhccccccceeccccCCccC
Q 002278 94 SDNSLYGDIPFSISKLKQLEFLNLKNNQLTGP-IPSTLTQIPNLKTLDLARNQ-LTGEIPRLIYWNEVLQYLGLRGNALT 171 (943)
Q Consensus 94 s~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n~l~ 171 (943)
++|++++..|..|+++++|++|+|++|++++. .|..|.++++|++|+|++|+ +....+..|..+++|++|++++|+++
T Consensus 82 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 82 SDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161 (549)
T ss_dssp TTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred CCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCccc
Confidence 99999977777799999999999999999863 56789999999999999998 44444568889999999999999999
Q ss_pred CCCCcccccccccceeeccceecccccCCCCcCCCcccEEEeecccccCcC--C--CCCCcceEeEEEecCccccccCCc
Q 002278 172 GMLSPDMCQLTGLWYFDVRGNNLTGTIPDSIGNCTSFEILDISYNQITGEI--P--YNIGFLQVATLSLQGNKLTGKIPE 247 (943)
Q Consensus 172 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~--~--~~~~~~~L~~L~L~~n~l~~~~~~ 247 (943)
+..+..+..+++|++|++++|.+.......+..+++|++|++++|++++.. | ..-...+++.|++++|.+++..+.
T Consensus 162 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 241 (549)
T 2z81_A 162 NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN 241 (549)
T ss_dssp EECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHH
T ss_pred ccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHH
Confidence 988889999999999999999887443334467899999999999998642 1 112345788999999988764443
Q ss_pred ----cccccCCCcEEecCCCCCCCCC------CcccCCCCCcceEEecCCCCCCCC-----CCCcCCCCcCcEEEcccCc
Q 002278 248 ----VIGLMQALAVLDLSENELVGPI------PPILGNLSYTGKLYLHGNKLTGPI-----PPELGNMSKLSYLQLQNNQ 312 (943)
Q Consensus 248 ----~l~~l~~L~~L~Ls~N~l~~~~------~~~~~~l~~L~~L~L~~n~l~~~~-----~~~~~~l~~L~~L~L~~N~ 312 (943)
.+..+++|+.|++++|.+.+.. ...+..+.+|+.|.+.++.+.... +..+..+.+|+.|++++|.
T Consensus 242 ~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~ 321 (549)
T 2z81_A 242 ELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK 321 (549)
T ss_dssp HHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC
T ss_pred HHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc
Confidence 3466788999999999876531 234567788888998888776321 1112334678999999999
Q ss_pred ccccccccc-CCcccceEEEccccccCCcCc---ccccCCCcCcEEEeeCCcccCccc--ccccccCccceeeccCCcCC
Q 002278 313 LVGTIPAEL-GKLEQLFELNLADNNLEGPIP---HNISSCTALNQFNVHGNRLSGAIP--SSFRNLGSLTYLNLSRNNFK 386 (943)
Q Consensus 313 l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~p---~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~L~~N~l~ 386 (943)
+. .+|..+ ..+++|++|+|++|++.+.+| ..+..+++|++|++++|++++..+ ..+..+++|++|+|++|+++
T Consensus 322 l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 400 (549)
T 2z81_A 322 VF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH 400 (549)
T ss_dssp CC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred cc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc
Confidence 87 555554 578889999999999887664 347788899999999999886543 45888889999999999888
Q ss_pred CCCCCCCCCCCCccEEecCCCcCCCccCCCcccccccceeecccccccccCCccccCCCccceecccCccccccCChhhh
Q 002278 387 GKVPTELGRIINLDTLDLSVNNFSGSVPASIGDLEHLLTLNLSRNHLNGLLPAEFGNLRSIQTIDMSFNQLSGSIPAELG 466 (943)
Q Consensus 387 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 466 (943)
.+|..+..+++|+.|++++|++++ +|..+ .++|++|+|++|++++.+ ..+++|++|+|++|+|+ .+|. ..
T Consensus 401 -~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~ 470 (549)
T 2z81_A 401 -PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-AS 470 (549)
T ss_dssp -CCCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GG
T ss_pred -cCChhhcccccccEEECCCCCccc-ccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cc
Confidence 678888888889999999998873 45443 257888999999888643 57788899999999888 6776 46
Q ss_pred cccccceecccCcccCCCCCCcCccccCCcccccCCccccccCC
Q 002278 467 QLQNIISLILNNNNLQGGIPDQLSNCFSLSNLNVSYNNLSGIIP 510 (943)
Q Consensus 467 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~ 510 (943)
.+++|+.|+|++|++++.+|..+..+++|+.|++++|++++..|
T Consensus 471 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 471 LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp GCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred cCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 78888999999999888888888888888888888888877665
No 16
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=100.00 E-value=1.8e-51 Score=448.00 Aligned_cols=263 Identities=26% Similarity=0.415 Sum_probs=212.2
Q ss_pred hhccccceEEeeeceEEEEEEEec------CCceEEEEEecccCcccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcce
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK------NSRPIAVKKLYNQYPHNLREFETELETIGSIRHRNIVSLHGYALSPYGNL 688 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 688 (943)
.++|...+.||+|+||+||+|+++ +++.||||++........++|.+|++++++++|||||+++|+|.+++..+
T Consensus 40 ~~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~ 119 (329)
T 4aoj_A 40 RRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLL 119 (329)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEE
T ss_pred HHHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEE
Confidence 356778889999999999999865 36789999998766666788999999999999999999999999999999
Q ss_pred EEEEEccCCChhhhccCCC------------CCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCc
Q 002278 689 LFYDYMVNGSLWDLLHGPS------------KKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFD 756 (943)
Q Consensus 689 lv~e~~~~g~L~~~l~~~~------------~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~ 756 (943)
+|||||++|+|.++++... ...+++|.+++.|+.|||.||+|||++ +||||||||+|||+++++.
T Consensus 120 lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLKp~NILl~~~~~ 196 (329)
T 4aoj_A 120 MVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGL---HFVHRDLATRNCLVGQGLV 196 (329)
T ss_dssp EEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEETTTE
T ss_pred EEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcC---CeecccccHhhEEECCCCc
Confidence 9999999999999986432 134699999999999999999999999 9999999999999999999
Q ss_pred eeecccccccccCCCCC-ceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHh-CCCCCCCCccHHHHHHHhcc
Q 002278 757 AHLSDFGIARCIPTAMP-HASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILT-GKKAVDNESNLHQLIMSKAD 834 (943)
Q Consensus 757 ~kl~DFGla~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-G~~p~~~~~~~~~~~~~~~~ 834 (943)
+||+|||+|+....... .......||+.|||||++.+..++.++|||||||++|||+| |+.||.+....+........
T Consensus 197 ~Ki~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~~~~~~~i~~g 276 (329)
T 4aoj_A 197 VKIGDFGMSRDIYSTDYYRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSNTEAIDCITQG 276 (329)
T ss_dssp EEECCCC----------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCHHHHHHHHHHT
T ss_pred EEEcccccceeccCCCcceecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCCCHHHHHHHHHcC
Confidence 99999999987644322 22334569999999999999999999999999999999999 99999877655443333222
Q ss_pred ccccccccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCCCCC
Q 002278 835 DNTVMEAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLPAPP 892 (943)
Q Consensus 835 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~~~~ 892 (943)
. .+..+..+ ...+.+++..||+.||++|||++||+++|+.+...++
T Consensus 277 ~-------~~~~p~~~-----~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~pp 322 (329)
T 4aoj_A 277 R-------ELERPRAC-----PPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQAPP 322 (329)
T ss_dssp C-------CCCCCTTC-----CHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHSCC
T ss_pred C-------CCCCcccc-----cHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHhhCCc
Confidence 1 11111111 2467899999999999999999999999998766543
No 17
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=100.00 E-value=9.6e-52 Score=443.80 Aligned_cols=261 Identities=26% Similarity=0.407 Sum_probs=216.3
Q ss_pred hhccccceEEeeeceEEEEEEEec------CCceEEEEEecccCcccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcce
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK------NSRPIAVKKLYNQYPHNLREFETELETIGSIRHRNIVSLHGYALSPYGNL 688 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~------~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 688 (943)
.++|...+.||+|+||+||+|++. ++..||||++........++|.+|++++++++|||||+++|+|.+++..+
T Consensus 12 r~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~ 91 (299)
T 4asz_A 12 RHNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLI 91 (299)
T ss_dssp GGGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEE
T ss_pred HHHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEE
Confidence 357888899999999999999864 36789999998766666788999999999999999999999999999999
Q ss_pred EEEEEccCCChhhhccCCC----------CCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCcee
Q 002278 689 LFYDYMVNGSLWDLLHGPS----------KKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAH 758 (943)
Q Consensus 689 lv~e~~~~g~L~~~l~~~~----------~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~k 758 (943)
+|||||++|+|.++++... ....++|.++..++.|||.||+|||++ +||||||||+|||+++++.+|
T Consensus 92 lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDlKp~NILl~~~~~~K 168 (299)
T 4asz_A 92 MVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQ---HFVHRDLATRNCLVGENLLVK 168 (299)
T ss_dssp EEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEE
T ss_pred EEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCccCHhhEEECCCCcEE
Confidence 9999999999999996321 234699999999999999999999999 999999999999999999999
Q ss_pred ecccccccccCCCCCc-eeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHh-CCCCCCCCccHHHHHHHhcccc
Q 002278 759 LSDFGIARCIPTAMPH-ASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILT-GKKAVDNESNLHQLIMSKADDN 836 (943)
Q Consensus 759 l~DFGla~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-G~~p~~~~~~~~~~~~~~~~~~ 836 (943)
|+|||+|+........ ......||+.|||||++.+..|+.++|||||||++|||+| |+.||.+....+..........
T Consensus 169 i~DFGla~~~~~~~~~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~~~~~~~i~~~~~ 248 (299)
T 4asz_A 169 IGDFGMSRDVYSTDYYRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSNNEVIECITQGRV 248 (299)
T ss_dssp ECCCSCHHHHTGGGCEEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHHTCC
T ss_pred ECCcccceecCCCCceeecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHcCCC
Confidence 9999999876443322 2233569999999999999999999999999999999999 9999987765543333322211
Q ss_pred ccccccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCCC
Q 002278 837 TVMEAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLPA 890 (943)
Q Consensus 837 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~~ 890 (943)
+..+..+ +..+.+++..||+.||++|||++++.+.|+.+...
T Consensus 249 -------~~~p~~~-----~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~~ 290 (299)
T 4asz_A 249 -------LQRPRTC-----PQEVYELMLGCWQREPHMRKNIKGIHTLLQNLAKA 290 (299)
T ss_dssp -------CCCCTTC-----CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred -------CCCCccc-----hHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhc
Confidence 1111111 24678999999999999999999999999876543
No 18
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=100.00 E-value=5.5e-51 Score=442.69 Aligned_cols=253 Identities=22% Similarity=0.326 Sum_probs=215.8
Q ss_pred hccccceEEeeeceEEEEEEEec-CCceEEEEEecccCcccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEEEEEc
Q 002278 616 ENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYPHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLFYDYM 694 (943)
Q Consensus 616 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 694 (943)
+.|+..+.||+|+||+||+|+++ +++.||||++........+.+.+|+++++.++|||||+++++|.+++..|+|||||
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~ 153 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL 153 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeCC
Confidence 56899999999999999999986 58999999997665556677899999999999999999999999999999999999
Q ss_pred cCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccCCCCCc
Q 002278 695 VNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIPTAMPH 774 (943)
Q Consensus 695 ~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~~~~~~ 774 (943)
+||+|.+++. ...+++.++..++.||+.||+|||++ +||||||||+|||++.+|++||+|||+|+.+......
T Consensus 154 ~gg~L~~~l~----~~~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~ 226 (346)
T 4fih_A 154 EGGALTDIVT----HTRMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPR 226 (346)
T ss_dssp TTEEHHHHHH----HSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECCSSSCC
T ss_pred CCCcHHHHHH----cCCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCCHHHEEECCCCCEEEecCcCceecCCCCCc
Confidence 9999999995 34699999999999999999999999 9999999999999999999999999999987554332
Q ss_pred eeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCcccccCccCHH
Q 002278 775 ASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPEVSVTCVDLS 854 (943)
Q Consensus 775 ~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 854 (943)
....+||+.|||||++.+..|+.++||||+||++|||++|++||.+......+..+........ ...+.+
T Consensus 227 -~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~~~-~~~~~~-------- 296 (346)
T 4fih_A 227 -RKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRL-KNLHKV-------- 296 (346)
T ss_dssp -BCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSSCCCC-SCGGGS--------
T ss_pred -ccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHcCCCCCC-CccccC--------
Confidence 3345799999999999999999999999999999999999999998776655444332211111 111111
Q ss_pred HHHHHHHHHHHccCCCCCCCCCHHHHHHHHhh
Q 002278 855 AVRKTFQLALLCTKRYPSERPTMQEVARVLVS 886 (943)
Q Consensus 855 ~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~ 886 (943)
...+.+++.+||..||++|||+.|+++|-+-
T Consensus 297 -s~~~~dli~~~L~~dP~~R~ta~e~l~Hp~~ 327 (346)
T 4fih_A 297 -SPSLKGFLDRLLVRDPAQRATAAELLKHPFL 327 (346)
T ss_dssp -CHHHHHHHHHHSCSSTTTSCCHHHHTTCGGG
T ss_pred -CHHHHHHHHHHcCCChhHCcCHHHHhcCHhh
Confidence 2456789999999999999999999998653
No 19
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=100.00 E-value=8.6e-51 Score=438.32 Aligned_cols=258 Identities=22% Similarity=0.340 Sum_probs=211.9
Q ss_pred hccccceEEeeeceEEEEEEEec------CCceEEEEEecccC-cccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcce
Q 002278 616 ENLSEKYIVGYGASSTVYKCALK------NSRPIAVKKLYNQY-PHNLREFETELETIGSIRHRNIVSLHGYALSPYGNL 688 (943)
Q Consensus 616 ~~~~~~~~lG~G~~g~Vy~~~~~------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 688 (943)
..++..+.||+|+||+||+|++. +++.||||++.... ....++|.+|+.++++++|||||+++|+|.+++..+
T Consensus 26 ~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~~ 105 (308)
T 4gt4_A 26 SAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPLS 105 (308)
T ss_dssp GGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCE
T ss_pred HHCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEECCEEE
Confidence 44566788999999999999863 35789999996543 345678999999999999999999999999999999
Q ss_pred EEEEEccCCChhhhccCCC-------------CCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCC
Q 002278 689 LFYDYMVNGSLWDLLHGPS-------------KKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENF 755 (943)
Q Consensus 689 lv~e~~~~g~L~~~l~~~~-------------~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~ 755 (943)
+|||||++|+|.++|.... ....++|.++..|+.|||.||+|||++ +||||||||+|||+++++
T Consensus 106 lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLK~~NILl~~~~ 182 (308)
T 4gt4_A 106 MIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSH---HVVHKDLATRNVLVYDKL 182 (308)
T ss_dssp EEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGG
T ss_pred EEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhC---CCCCCCccccceEECCCC
Confidence 9999999999999996432 134689999999999999999999999 999999999999999999
Q ss_pred ceeecccccccccCCCCC-ceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHh-CCCCCCCCccHHHHHHHhc
Q 002278 756 DAHLSDFGIARCIPTAMP-HASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILT-GKKAVDNESNLHQLIMSKA 833 (943)
Q Consensus 756 ~~kl~DFGla~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-G~~p~~~~~~~~~~~~~~~ 833 (943)
.+||+|||+|+....... .......||++|||||++.++.|+.++|||||||++|||+| |+.||.+............
T Consensus 183 ~~Ki~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~~~~~~~~i~~ 262 (308)
T 4gt4_A 183 NVKISDLGLFREVYAADYYKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYSNQDVVEMIRN 262 (308)
T ss_dssp CEEECCSCCBCGGGGGGCBCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCCHHHHHHHHHT
T ss_pred CEEECCcccceeccCCCceeEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHc
Confidence 999999999987643322 22334569999999999999999999999999999999999 8999987765443332222
Q ss_pred cccccccccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcC
Q 002278 834 DDNTVMEAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLL 888 (943)
Q Consensus 834 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~ 888 (943)
. .. +..+.. .+..+.+++..||+.||++||||.||+++|+.+.
T Consensus 263 ~-~~------~~~p~~-----~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~~ 305 (308)
T 4gt4_A 263 R-QV------LPCPDD-----CPAWVYALMIECWNEFPSRRPRFKDIHSRLRAWG 305 (308)
T ss_dssp T-CC------CCCCTT-----CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSC
T ss_pred C-CC------CCCccc-----chHHHHHHHHHHcCCChhHCcCHHHHHHHHHhcc
Confidence 1 11 111111 1246789999999999999999999999998653
No 20
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=100.00 E-value=1e-50 Score=435.37 Aligned_cols=260 Identities=27% Similarity=0.419 Sum_probs=207.4
Q ss_pred hhccccceEEeeeceEEEEEEEecCCceEEEEEecccC--cccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEEEE
Q 002278 615 TENLSEKYIVGYGASSTVYKCALKNSRPIAVKKLYNQY--PHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLFYD 692 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 692 (943)
.+++...+.||+|+||+||+|++++ .||||+++... ....+.|.+|++++++++|||||+++|++.+ +..++|||
T Consensus 35 ~~~l~l~~~iG~G~fG~Vy~~~~~~--~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~-~~~~iVmE 111 (307)
T 3omv_A 35 ASEVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK-DNLAIVTQ 111 (307)
T ss_dssp TTSCCEEEECCCCSSSEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-SSCEEEEE
T ss_pred HHHeEEeeEEeeCCCcEEEEEEECC--cEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEC-CeEEEEEE
Confidence 4577888999999999999998763 59999886433 3445689999999999999999999998865 56899999
Q ss_pred EccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccCCCC
Q 002278 693 YMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIPTAM 772 (943)
Q Consensus 693 ~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~~~~ 772 (943)
||++|+|.++++. ....+++.++..|+.|||.||+|||++ +||||||||+|||+++++.+||+|||+|+......
T Consensus 112 y~~gGsL~~~l~~--~~~~l~~~~~~~i~~qia~gL~yLH~~---~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~ 186 (307)
T 3omv_A 112 WCEGSSLYKHLHV--QETKFQMFQLIDIARQTAQGMDYLHAK---NIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWS 186 (307)
T ss_dssp CCSSCBHHHHHHT--SCCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCCSSSEEEETTEEEEECCCSSCBC-----
T ss_pred cCCCCCHHHHHhh--cCCCCCHHHHHHHHHHHHHHHHHHHHC---CccCCccCHHHEEECCCCcEEEeeccCceecccCC
Confidence 9999999999974 345699999999999999999999999 99999999999999999999999999998764332
Q ss_pred -CceeeeEecccceeCcccccc---CCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCccccc
Q 002278 773 -PHASTFVLGTIGYIDPEYAHT---SRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPEVSV 848 (943)
Q Consensus 773 -~~~~~~~~gt~~y~aPE~~~~---~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 848 (943)
.......+||+.|||||++.+ ..|+.++|||||||++|||+||+.||.+.................+.. +....
T Consensus 187 ~~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~~~~~~~~~~~~~p~~--~~~~~ 264 (307)
T 3omv_A 187 GSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIFMVGRGYASPDL--SKLYK 264 (307)
T ss_dssp -------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHTTCCCCCS--TTSCT
T ss_pred cceeecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCCChHHHHHHHHhcCCCCCCc--ccccc
Confidence 222344579999999999864 458999999999999999999999998776655544443332211110 11111
Q ss_pred CccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCC
Q 002278 849 TCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLP 889 (943)
Q Consensus 849 ~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~ 889 (943)
. .+..+.+++..||+.||++|||+.|++++|+.+..
T Consensus 265 ~-----~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~~ 300 (307)
T 3omv_A 265 N-----CPKAMKRLVADCVKKVKEERPLFPQILSSIELLQH 300 (307)
T ss_dssp T-----SCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHHT
T ss_pred c-----chHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhc
Confidence 1 12567889999999999999999999999987654
No 21
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=100.00 E-value=4.8e-51 Score=436.36 Aligned_cols=249 Identities=22% Similarity=0.257 Sum_probs=213.4
Q ss_pred hccccceEEeeeceEEEEEEEec-CCceEEEEEeccc---CcccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEEE
Q 002278 616 ENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQ---YPHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLFY 691 (943)
Q Consensus 616 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 691 (943)
++|+..+.||+|+||+||+|+++ +++.||||++.+. .....+.+.+|++++++++|||||++++++.+++..|+||
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yivm 111 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFGL 111 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 57999999999999999999976 5889999999643 2345678999999999999999999999999999999999
Q ss_pred EEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccCCC
Q 002278 692 DYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIPTA 771 (943)
Q Consensus 692 e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~~~ 771 (943)
||++||+|.+++. ..+.+++.++..++.||+.||+|||++ +||||||||+|||+++++++||+|||+|+.+...
T Consensus 112 Ey~~gG~L~~~i~---~~~~l~e~~~~~~~~qi~~al~ylH~~---~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~ 185 (311)
T 4aw0_A 112 SYAKNGELLKYIR---KIGSFDETCTRFYTAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFGTAKVLSPE 185 (311)
T ss_dssp CCCTTEEHHHHHH---HHSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCEECCTT
T ss_pred ecCCCCCHHHHHH---HcCCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCCHHHeEEcCCCCEEEEEcCCceecCCC
Confidence 9999999999997 456799999999999999999999999 9999999999999999999999999999987543
Q ss_pred CC-ceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCcccccCc
Q 002278 772 MP-HASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPEVSVTC 850 (943)
Q Consensus 772 ~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 850 (943)
.. ......+||+.|||||++.+..|+.++||||+||++|||+||+.||.+.+.......+......+++. ++
T Consensus 186 ~~~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~~p~~----~s--- 258 (311)
T 4aw0_A 186 SKQARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGNEGLIFAKIIKLEYDFPEK----FF--- 258 (311)
T ss_dssp TTCCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTT----CC---
T ss_pred CCcccccCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCcc----cC---
Confidence 22 23345679999999999999999999999999999999999999998876655554444433332222 11
Q ss_pred cCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002278 851 VDLSAVRKTFQLALLCTKRYPSERPTMQEVARV 883 (943)
Q Consensus 851 ~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~ 883 (943)
..+.+++.+|+..||++|||++|+..+
T Consensus 259 ------~~~~dli~~lL~~dp~~R~t~~e~~~~ 285 (311)
T 4aw0_A 259 ------PKARDLVEKLLVLDATKRLGCEEMEGY 285 (311)
T ss_dssp ------HHHHHHHHHHSCSSGGGSTTSGGGTCH
T ss_pred ------HHHHHHHHHHccCCHhHCcChHHHcCC
Confidence 356689999999999999999986443
No 22
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=100.00 E-value=5.6e-51 Score=443.31 Aligned_cols=254 Identities=24% Similarity=0.332 Sum_probs=208.2
Q ss_pred hhccccceEEeeeceEEEEEEEec-CCceEEEEEecccC--cccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEEE
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQY--PHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLFY 691 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 691 (943)
.++|+..+.||+|+||+||+|+++ +++.||||++.... ....+.+.+|++++++++|||||++++++.+++..|+||
T Consensus 23 me~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVm 102 (350)
T 4b9d_A 23 MEKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVM 102 (350)
T ss_dssp CCCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred ccceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEE
Confidence 468999999999999999999976 58999999996543 334567899999999999999999999999999999999
Q ss_pred EEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccCCC
Q 002278 692 DYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIPTA 771 (943)
Q Consensus 692 e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~~~ 771 (943)
|||+||+|.+++... ....+++.+++.++.||+.||+|||++ +||||||||+|||++++|.+||+|||+|+.....
T Consensus 103 Ey~~gg~L~~~i~~~-~~~~~~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~ 178 (350)
T 4b9d_A 103 DYCEGGDLFKRINAQ-KGVLFQEDQILDWFVQICLALKHVHDR---KILHRDIKSQNIFLTKDGTVQLGDFGIARVLNST 178 (350)
T ss_dssp ECCTTCBHHHHHHHT-TTCCCCHHHHHHHHHHHHHHHHHHHHT---TCEETTCCGGGEEECTTCCEEECSTTEESCCCHH
T ss_pred eCCCCCcHHHHHHHc-CCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCCHHHEEECCCCCEEEcccccceeecCC
Confidence 999999999999632 234578999999999999999999999 9999999999999999999999999999876432
Q ss_pred CCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCcccccCcc
Q 002278 772 MPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPEVSVTCV 851 (943)
Q Consensus 772 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 851 (943)
. ......+||+.|||||++.+..|+.++||||+||++|||+||+.||.+.+.......+.....+ ..++.+
T Consensus 179 ~-~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i~~~~~~---~~~~~~----- 249 (350)
T 4b9d_A 179 V-ELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGSMKNLVLKIISGSFP---PVSLHY----- 249 (350)
T ss_dssp H-HHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTCCC---CCCTTS-----
T ss_pred c-ccccccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHcCCCC---CCCccC-----
Confidence 1 1223356999999999999999999999999999999999999999987765555444433221 111112
Q ss_pred CHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 002278 852 DLSAVRKTFQLALLCTKRYPSERPTMQEVARVLV 885 (943)
Q Consensus 852 ~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~ 885 (943)
...+.+++.+||+.||++|||+.|+++|-+
T Consensus 250 ----s~~~~~li~~~L~~dP~~R~s~~e~l~hp~ 279 (350)
T 4b9d_A 250 ----SYDLRSLVSQLFKRNPRDRPSVNSILEKGF 279 (350)
T ss_dssp ----CHHHHHHHHHHTCSSGGGSCCHHHHHTSHH
T ss_pred ----CHHHHHHHHHHccCChhHCcCHHHHhcCHH
Confidence 145778999999999999999999998643
No 23
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=6.1e-51 Score=483.66 Aligned_cols=483 Identities=19% Similarity=0.207 Sum_probs=409.2
Q ss_pred EecCCCCcEEEEEcCCCCCccccCCCcCCCCCCCEEEeeCCcccccCCCCccCCCCCcEEeccCCCcCCccchhcccccc
Q 002278 32 FCDNSSLSVVSLNLSSLNLGGEISPSIGDLRNLQSIDFQGNKLTGQIPDEIGNCGSLVHIELSDNSLYGDIPFSISKLKQ 111 (943)
Q Consensus 32 ~c~~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 111 (943)
.|.... + .|.++++++ .+|..+. ++|++|||++|+|++..|..|.++++|++|+|++|++++..|.+|+++++
T Consensus 3 ~C~~~~--~--c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 75 (549)
T 2z81_A 3 SCDASG--V--CDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGS 75 (549)
T ss_dssp EECTTS--E--EECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred cCCCCc--e--EECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhcccccc
Confidence 476543 3 689999999 7888765 79999999999999888899999999999999999999888889999999
Q ss_pred ceEEEecCcccccCCCcccCCCCCCcEEEEecccccc-ccchhccccccceeccccCCc-cCCCCCcccccccccceeec
Q 002278 112 LEFLNLKNNQLTGPIPSTLTQIPNLKTLDLARNQLTG-EIPRLIYWNEVLQYLGLRGNA-LTGMLSPDMCQLTGLWYFDV 189 (943)
Q Consensus 112 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L 189 (943)
|++|+|++|++++..|..|+++++|++|+|++|++++ ..|..+..+++|++|++++|. +..+++..+..+++|++|++
T Consensus 76 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L 155 (549)
T 2z81_A 76 LEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEI 155 (549)
T ss_dssp CCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEE
T ss_pred CCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeec
Confidence 9999999999998888889999999999999999986 357789999999999999998 67777788999999999999
Q ss_pred cceecccccCCCCcCCCcccEEEeecccccCcCCCCC--CcceEeEEEecCccccccC---CccccccCCCcEEecCCCC
Q 002278 190 RGNNLTGTIPDSIGNCTSFEILDISYNQITGEIPYNI--GFLQVATLSLQGNKLTGKI---PEVIGLMQALAVLDLSENE 264 (943)
Q Consensus 190 ~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~--~~~~L~~L~L~~n~l~~~~---~~~l~~l~~L~~L~Ls~N~ 264 (943)
++|++++..|..+..+++|++|++++|.+.. +|..+ ...+|+.|++++|++++.. ......+++|+.|++++|.
T Consensus 156 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~ 234 (549)
T 2z81_A 156 KALSLRNYQSQSLKSIRDIHHLTLHLSESAF-LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV 234 (549)
T ss_dssp EETTCCEECTTTTTTCSEEEEEEEECSBSTT-HHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCE
T ss_pred cCCcccccChhhhhccccCceEecccCcccc-cchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccc
Confidence 9999999999999999999999999999863 33322 2468999999999998742 2233567899999999999
Q ss_pred CCCCCC----cccCCCCCcceEEecCCCCCCCC------CCCcCCCCcCcEEEcccCcccccc-----ccccCCcccceE
Q 002278 265 LVGPIP----PILGNLSYTGKLYLHGNKLTGPI------PPELGNMSKLSYLQLQNNQLVGTI-----PAELGKLEQLFE 329 (943)
Q Consensus 265 l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~------~~~~~~l~~L~~L~L~~N~l~~~~-----~~~~~~l~~L~~ 329 (943)
+.+..+ ..+..+++|+.|++++|.+.+.. ...+..+.+|+.|++.++.+.... +..+....+|+.
T Consensus 235 l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~ 314 (549)
T 2z81_A 235 LTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKR 314 (549)
T ss_dssp EEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCE
T ss_pred cchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceE
Confidence 876433 34567889999999999987632 234577889999999999876321 122334568999
Q ss_pred EEccccccCCcCcccc-cCCCcCcEEEeeCCcccCccc---ccccccCccceeeccCCcCCCCCC--CCCCCCCCccEEe
Q 002278 330 LNLADNNLEGPIPHNI-SSCTALNQFNVHGNRLSGAIP---SSFRNLGSLTYLNLSRNNFKGKVP--TELGRIINLDTLD 403 (943)
Q Consensus 330 L~L~~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~ 403 (943)
|++++|++. .+|..+ ..+++|++|++++|++++..| ..+..+++|+.|+|++|++++..+ ..+..+++|++|+
T Consensus 315 L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ 393 (549)
T 2z81_A 315 ITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLD 393 (549)
T ss_dssp EEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEE
T ss_pred EEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEE
Confidence 999999998 455554 689999999999999997664 347889999999999999985432 4588999999999
Q ss_pred cCCCcCCCccCCCcccccccceeecccccccccCCccccCCCccceecccCccccccCChhhhcccccceecccCcccCC
Q 002278 404 LSVNNFSGSVPASIGDLEHLLTLNLSRNHLNGLLPAEFGNLRSIQTIDMSFNQLSGSIPAELGQLQNIISLILNNNNLQG 483 (943)
Q Consensus 404 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 483 (943)
+++|+++ .+|..+..+++|++|+|++|++++ +|..+. ++|++|+|++|+|++.+ ..+++|++|+|++|+|+
T Consensus 394 Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~~--~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~- 464 (549)
T 2z81_A 394 ISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCIP--QTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK- 464 (549)
T ss_dssp CTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTSC--TTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-
T ss_pred CCCCCCc-cCChhhcccccccEEECCCCCccc-ccchhc--CCceEEECCCCChhhhc----ccCChhcEEECCCCccC-
Confidence 9999999 688899999999999999999985 444442 68999999999999643 57899999999999999
Q ss_pred CCCCcCccccCCcccccCCccccccCCC-CcccCcCCCCccccCCCCCCCC
Q 002278 484 GIPDQLSNCFSLSNLNVSYNNLSGIIPP-IRNFSRFSSNSFIGNPLLCGNW 533 (943)
Q Consensus 484 ~~p~~~~~l~~L~~L~ls~N~l~~~~~~-~~~~~~~~~~~~~~Np~~c~~~ 533 (943)
.+|. ...+++|++|+|++|+|++.+|. +..+..+..+.+.+|||.|+++
T Consensus 465 ~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 465 TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 6776 56899999999999999999886 5677888889999999999853
No 24
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=100.00 E-value=2.7e-50 Score=436.07 Aligned_cols=254 Identities=24% Similarity=0.264 Sum_probs=208.9
Q ss_pred hhccccceEEeeeceEEEEEEEec-CCceEEEEEecccCcccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEEEEE
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYPHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLFYDY 693 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 693 (943)
.+.|+..+.||+|+||+||+|+++ +++.||||++..... ..+|+++++.++|||||++++++.+++..|+||||
T Consensus 57 ~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-----~~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy 131 (336)
T 4g3f_A 57 VHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-----RVEELVACAGLSSPRIVPLYGAVREGPWVNIFMEL 131 (336)
T ss_dssp TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-----CTHHHHTTTTCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred hhheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHh-----HHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEec
Confidence 456888889999999999999986 588999999965422 24699999999999999999999999999999999
Q ss_pred ccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCC-ceeecccccccccCCCC
Q 002278 694 MVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENF-DAHLSDFGIARCIPTAM 772 (943)
Q Consensus 694 ~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~-~~kl~DFGla~~~~~~~ 772 (943)
|+||+|.++++ ..+.+++.++..++.||+.||+|||++ +||||||||+|||++.+| ++||+|||+|+.+....
T Consensus 132 ~~gg~L~~~l~---~~~~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~ 205 (336)
T 4g3f_A 132 LEGGSLGQLIK---QMGCLPEDRALYYLGQALEGLEYLHTR---RILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDG 205 (336)
T ss_dssp CTTCBHHHHHH---HHSSCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCCGGGEEECTTSCCEEECCCTTCEEC----
T ss_pred cCCCcHHHHHH---HcCCCCHHHHHHHHHHHHHHHHHHHHC---CceecccCHHHEEEeCCCCEEEEeeCCCCeEccCCC
Confidence 99999999997 456799999999999999999999999 999999999999999887 69999999999875432
Q ss_pred Cc----eeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCccccc
Q 002278 773 PH----ASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPEVSV 848 (943)
Q Consensus 773 ~~----~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 848 (943)
.. .....+||+.|||||++.+..|+.++||||+||++|||+||+.||.+.........+..... ....+++.++
T Consensus 206 ~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~~~~~i~~~~~-~~~~~~~~~s- 283 (336)
T 4g3f_A 206 LGKSLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGPLCLKIASEPP-PIREIPPSCA- 283 (336)
T ss_dssp --------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSCCHHHHHHSCC-GGGGSCTTSC-
T ss_pred cccceecCCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHcCCC-CchhcCccCC-
Confidence 21 12235699999999999999999999999999999999999999986554333333322222 1122233332
Q ss_pred CccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCC
Q 002278 849 TCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLP 889 (943)
Q Consensus 849 ~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~ 889 (943)
..+.+++.+||+.||++|||+.|+++++.....
T Consensus 284 --------~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~ 316 (336)
T 4g3f_A 284 --------PLTAQAIQEGLRKEPVHRASAMELRRKVGKALQ 316 (336)
T ss_dssp --------HHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHccCCHhHCcCHHHHHHHHHHHHh
Confidence 456789999999999999999999999876553
No 25
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=100.00 E-value=7.4e-50 Score=444.53 Aligned_cols=254 Identities=22% Similarity=0.325 Sum_probs=217.1
Q ss_pred hhccccceEEeeeceEEEEEEEec-CCceEEEEEecccCcccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEEEEE
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYPHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLFYDY 693 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 693 (943)
.+.|+..+.||+|+||+||+|+++ +++.||||++........+.+.+|+++|+.++|||||+++++|.+++..|+||||
T Consensus 150 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy 229 (423)
T 4fie_A 150 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEF 229 (423)
T ss_dssp GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred hHhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEEEeC
Confidence 356999999999999999999986 5899999999766666667789999999999999999999999999999999999
Q ss_pred ccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccCCCCC
Q 002278 694 MVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIPTAMP 773 (943)
Q Consensus 694 ~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~~~~~ 773 (943)
|+||+|.+++. ...+++.++..++.||+.||+|||++ +||||||||+|||++.+|.+||+|||+|+.+.....
T Consensus 230 ~~gG~L~~~i~----~~~l~e~~~~~~~~qil~aL~ylH~~---~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~~ 302 (423)
T 4fie_A 230 LEGGALTDIVT----HTRMNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVP 302 (423)
T ss_dssp CTTEEHHHHHH----HSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSTTTEEECTTCCEEECCCTTCEECCSSCC
T ss_pred CCCCcHHHHHh----ccCCCHHHHHHHHHHHHHHHHHHHHC---CeecccCCHHHEEEcCCCCEEEecCccceECCCCCc
Confidence 99999999985 34699999999999999999999999 999999999999999999999999999998755433
Q ss_pred ceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCcccccCccCH
Q 002278 774 HASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPEVSVTCVDL 853 (943)
Q Consensus 774 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 853 (943)
. ....+||+.|||||++.+..|+.++||||+||++|||++|+.||.+......+..+........ ...+.+
T Consensus 303 ~-~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~~~~~~i~~~~~~~~-~~~~~~------- 373 (423)
T 4fie_A 303 R-RKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPLKAMKMIRDNLPPRL-KNLHKV------- 373 (423)
T ss_dssp C-BCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCC-SCTTSS-------
T ss_pred c-ccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHcCCCCCC-cccccC-------
Confidence 3 3345799999999999999999999999999999999999999998776655544433211111 111111
Q ss_pred HHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhh
Q 002278 854 SAVRKTFQLALLCTKRYPSERPTMQEVARVLVS 886 (943)
Q Consensus 854 ~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~ 886 (943)
...+.+++.+||..||++|||+.|+++|-+-
T Consensus 374 --s~~~~dli~~~L~~dP~~R~ta~ell~Hp~~ 404 (423)
T 4fie_A 374 --SPSLKGFLDRLLVRDPAQRATAAELLKHPFL 404 (423)
T ss_dssp --CHHHHHHHHHHSCSSTTTSCCHHHHTTCGGG
T ss_pred --CHHHHHHHHHHcCCChhHCcCHHHHhcCHHh
Confidence 1456789999999999999999999998653
No 26
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=100.00 E-value=5.1e-50 Score=422.94 Aligned_cols=249 Identities=20% Similarity=0.270 Sum_probs=197.1
Q ss_pred hccccceEEeeeceEEEEEEEec-CCceEEEEEecccC---cccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEEE
Q 002278 616 ENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQY---PHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLFY 691 (943)
Q Consensus 616 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 691 (943)
++|+..+.||+|+||+||+|+++ +++.||+|++.+.. ....+.+.+|+++++.++|||||++++++.+++..|+||
T Consensus 13 g~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivm 92 (275)
T 3hyh_A 13 GNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMVI 92 (275)
T ss_dssp -CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred eCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEE
Confidence 68999999999999999999976 58999999986542 334567899999999999999999999999999999999
Q ss_pred EEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccCCC
Q 002278 692 DYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIPTA 771 (943)
Q Consensus 692 e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~~~ 771 (943)
||+ +|+|.+++. ....+++.++..++.||+.||+|||++ +|+||||||+|||+++++++||+|||+|+.....
T Consensus 93 Ey~-~g~L~~~l~---~~~~l~e~~~~~~~~qi~~al~ylH~~---~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~ 165 (275)
T 3hyh_A 93 EYA-GNELFDYIV---QRDKMSEQEARRFFQQIISAVEYCHRH---KIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDG 165 (275)
T ss_dssp ECC-CEEHHHHHH---HSCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCTTTEEECTTCCEEECCSSCC------
T ss_pred eCC-CCCHHHHHH---HcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCChHHeEECCCCCEEEeecCCCeecCCC
Confidence 999 789999986 456799999999999999999999999 9999999999999999999999999999876543
Q ss_pred CCceeeeEecccceeCccccccCCC-CCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCcccccCc
Q 002278 772 MPHASTFVLGTIGYIDPEYAHTSRL-NEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPEVSVTC 850 (943)
Q Consensus 772 ~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 850 (943)
. .....+||+.|||||++.+..+ +.++||||+||++|||+||+.||.+.........+......++.. +
T Consensus 166 ~--~~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~~~~~~~~~i~~~~~~~p~~----~---- 235 (275)
T 3hyh_A 166 N--FLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIPVLFKNISNGVYTLPKF----L---- 235 (275)
T ss_dssp -----------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTT----S----
T ss_pred C--ccCCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcCCCCCCCC----C----
Confidence 2 2234579999999999998876 589999999999999999999998765544333333222222211 1
Q ss_pred cCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhh
Q 002278 851 VDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVS 886 (943)
Q Consensus 851 ~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~ 886 (943)
...+.+++.+|++.||++|||++|+++|-|-
T Consensus 236 -----s~~~~~li~~~L~~dP~~R~s~~eil~hpw~ 266 (275)
T 3hyh_A 236 -----SPGAAGLIKRMLIVNPLNRISIHEIMQDDWF 266 (275)
T ss_dssp -----CHHHHHHHHHHSCSSGGGSCCHHHHHHCHHH
T ss_pred -----CHHHHHHHHHHccCChhHCcCHHHHHcCccc
Confidence 1356789999999999999999999998653
No 27
>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}
Probab=100.00 E-value=1.1e-49 Score=424.27 Aligned_cols=249 Identities=23% Similarity=0.334 Sum_probs=203.0
Q ss_pred ccceEEeeeceEEEEEEEec-CCceEEEEEecccC--cccHHHHHHHHHHHhcCCCCCcceeeeEEec----CCcceEEE
Q 002278 619 SEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQY--PHNLREFETELETIGSIRHRNIVSLHGYALS----PYGNLLFY 691 (943)
Q Consensus 619 ~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~----~~~~~lv~ 691 (943)
...+.||+|+||+||+|.++ .++.||+|++.... ....+.|.+|++++++++|||||+++++|.+ +...++||
T Consensus 29 ~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lvm 108 (290)
T 3fpq_A 29 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLVT 108 (290)
T ss_dssp EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEEE
T ss_pred EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEEE
Confidence 55668999999999999976 57899999986442 3345678999999999999999999999865 23479999
Q ss_pred EEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECC-CCceeecccccccccCC
Q 002278 692 DYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDE-NFDAHLSDFGIARCIPT 770 (943)
Q Consensus 692 e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~-~~~~kl~DFGla~~~~~ 770 (943)
|||++|+|.+++. ....+++..+..++.||+.||+|||++ .++||||||||+|||++. ++.+||+|||+|+....
T Consensus 109 Ey~~gg~L~~~l~---~~~~l~~~~~~~~~~qi~~aL~ylH~~-~~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~~~~ 184 (290)
T 3fpq_A 109 ELMTSGTLKTYLK---RFKVMKIKVLRSWCRQILKGLQFLHTR-TPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRA 184 (290)
T ss_dssp ECCCSCBHHHHHH---HHSSCCHHHHHHHHHHHHHHHHHHHTS-SSCCCCCCCCGGGEEESSTTSCEEECCTTGGGGCCT
T ss_pred eCCCCCCHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHC-CCCEEecccChhheeEECCCCCEEEEeCcCCEeCCC
Confidence 9999999999997 456799999999999999999999998 123999999999999984 79999999999986543
Q ss_pred CCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCcccccCc
Q 002278 771 AMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPEVSVTC 850 (943)
Q Consensus 771 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 850 (943)
. .....+||+.|||||++.+ .|+.++|||||||++|||+||+.||.+................ +...++..
T Consensus 185 ~---~~~~~~GTp~YmAPE~~~~-~y~~~~DiwSlGvilyelltg~~Pf~~~~~~~~~~~~i~~~~~-~~~~~~~~---- 255 (290)
T 3fpq_A 185 S---FAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVK-PASFDKVA---- 255 (290)
T ss_dssp T---SBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHHTTTCC-CGGGGGCC----
T ss_pred C---ccCCcccCccccCHHHcCC-CCCcHHHHHHHHHHHHHHHHCCCCCCCCCcHHHHHHHHHcCCC-CCCCCccC----
Confidence 2 2334579999999998865 6999999999999999999999999876666555544433221 11111111
Q ss_pred cCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 002278 851 VDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLV 885 (943)
Q Consensus 851 ~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~ 885 (943)
...+.+++.+||+.||++|||++|+++|-+
T Consensus 256 -----~~~~~~li~~~L~~dP~~R~s~~e~l~Hp~ 285 (290)
T 3fpq_A 256 -----IPEVKEIIEGCIRQNKDERYSIKDLLNHAF 285 (290)
T ss_dssp -----CHHHHHHHHHHSCSSGGGSCCHHHHHTSGG
T ss_pred -----CHHHHHHHHHHccCChhHCcCHHHHhcCcc
Confidence 135678999999999999999999998754
No 28
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.2e-50 Score=472.13 Aligned_cols=449 Identities=17% Similarity=0.151 Sum_probs=255.8
Q ss_pred EEEcCCCCCccccCCCcCCCCCCCEEEeeCCcccccCCCCccCCCCCcEEeccCCCcCCccchhccccccceEEEecCcc
Q 002278 42 SLNLSSLNLGGEISPSIGDLRNLQSIDFQGNKLTGQIPDEIGNCGSLVHIELSDNSLYGDIPFSISKLKQLEFLNLKNNQ 121 (943)
Q Consensus 42 ~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~ 121 (943)
.||+++|+++ .+|..+. ++|++|+|++|+|++..|..|.++++|++|+|++|++++..|..|+++++|++|+|++|+
T Consensus 4 ~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 4 LVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp EEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred eEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 5788888888 5777665 788888888888886666778888888888888888887667788888888888888888
Q ss_pred cccCCCcccCCCCCCcEEEEecccccc-ccchhccccccceeccccCCccCCCCCccccccccc--ceeeccceec--cc
Q 002278 122 LTGPIPSTLTQIPNLKTLDLARNQLTG-EIPRLIYWNEVLQYLGLRGNALTGMLSPDMCQLTGL--WYFDVRGNNL--TG 196 (943)
Q Consensus 122 l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L--~~L~L~~N~i--~~ 196 (943)
++ .+|.. .+++|++|+|++|++++ .+|..|+.+++|++|+|++|++++ ..+..+++| +.|++++|.+ .+
T Consensus 81 l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~ 154 (520)
T 2z7x_B 81 LV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEK 154 (520)
T ss_dssp CC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSS
T ss_pred ee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccc
Confidence 87 45554 77888888888888875 356777777778888877777765 355666666 7777777777 56
Q ss_pred ccCCCCcCCC-cccEEEeecccccCcCCCCC--CcceEeEEEecCcc-------ccccCCccccccCCCcEEecCCCCCC
Q 002278 197 TIPDSIGNCT-SFEILDISYNQITGEIPYNI--GFLQVATLSLQGNK-------LTGKIPEVIGLMQALAVLDLSENELV 266 (943)
Q Consensus 197 ~~~~~l~~l~-~L~~L~Ls~N~l~~~~~~~~--~~~~L~~L~L~~n~-------l~~~~~~~l~~l~~L~~L~Ls~N~l~ 266 (943)
..|..+..+. +...+++++|++.+.++... ...+|+.|++++|. +.+.+| .+..+++|+.|++++|.+.
T Consensus 155 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~ 233 (520)
T 2z7x_B 155 EDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETT 233 (520)
T ss_dssp CCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEE
T ss_pred cccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccC
Confidence 6666666655 33445666666655444321 23456666666655 444443 4555556666666555544
Q ss_pred CCCCcccC---CCCCcceEEecCCCCCCCCCCCc-----CCCCcCcEEEcccCccccccc-cccCCc---ccceEEEccc
Q 002278 267 GPIPPILG---NLSYTGKLYLHGNKLTGPIPPEL-----GNMSKLSYLQLQNNQLVGTIP-AELGKL---EQLFELNLAD 334 (943)
Q Consensus 267 ~~~~~~~~---~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~N~l~~~~~-~~~~~l---~~L~~L~L~~ 334 (943)
+..+..+. ..++|++|++++|++++.+|..+ ..+++|+.+++++|.+ .+| ..+..+ .+|+.|++++
T Consensus 234 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~ 311 (520)
T 2z7x_B 234 WNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSG 311 (520)
T ss_dssp HHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEES
T ss_pred HHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCC
Confidence 32111100 12345555555555555555554 5555555555555555 222 233332 3455555555
Q ss_pred cccCCcCcccccCCCcCcEEEeeCCcccCcccccccccCccceeeccCCcCCC--CCCCCCCCCCCccEEecCCCcCCCc
Q 002278 335 NNLEGPIPHNISSCTALNQFNVHGNRLSGAIPSSFRNLGSLTYLNLSRNNFKG--KVPTELGRIINLDTLDLSVNNFSGS 412 (943)
Q Consensus 335 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~ 412 (943)
|.+.... .+..+++|++|++++|++++..|..|..+++|++|+|++|++++ .+|..+..+++|+.|++++|.+++.
T Consensus 312 n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~ 389 (520)
T 2z7x_B 312 TRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYD 389 (520)
T ss_dssp SCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCC
T ss_pred Ccccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcc
Confidence 5544221 11344555555555555554445555555555555555555543 2233444455555555555555442
Q ss_pred cCC-CcccccccceeecccccccccCCccccCCCccceecccCccccccCChhhhcccccceecccCcccCCCCCCcCcc
Q 002278 413 VPA-SIGDLEHLLTLNLSRNHLNGLLPAEFGNLRSIQTIDMSFNQLSGSIPAELGQLQNIISLILNNNNLQGGIPDQLSN 491 (943)
Q Consensus 413 ~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 491 (943)
+|. .+..+++|+.|+|++|++++..|..+. ++|+.|+|++|+|+ .+|..+..+++|+.|+|++|+|++..+..+..
T Consensus 390 l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~ 466 (520)
T 2z7x_B 390 EKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDR 466 (520)
T ss_dssp GGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhcc
Confidence 222 244445555555555555444444332 44555555555554 44444445555555555555554222222444
Q ss_pred ccCCcccccCCccccc
Q 002278 492 CFSLSNLNVSYNNLSG 507 (943)
Q Consensus 492 l~~L~~L~ls~N~l~~ 507 (943)
+++|+.|++++|++++
T Consensus 467 l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 467 LTSLQKIWLHTNPWDC 482 (520)
T ss_dssp CTTCCEEECCSSCBCC
T ss_pred CCcccEEECcCCCCcc
Confidence 4555555555544443
No 29
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.5e-49 Score=468.19 Aligned_cols=453 Identities=19% Similarity=0.215 Sum_probs=392.6
Q ss_pred CEEEeeCCcccccCCCCccCCCCCcEEeccCCCcCCccchhccccccceEEEecCcccccCCCcccCCCCCCcEEEEecc
Q 002278 65 QSIDFQGNKLTGQIPDEIGNCGSLVHIELSDNSLYGDIPFSISKLKQLEFLNLKNNQLTGPIPSTLTQIPNLKTLDLARN 144 (943)
Q Consensus 65 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 144 (943)
++||+++|+|+ .+|..+. ++|++|+|++|++++..|..|+++++|++|+|++|++++..|..|.++++|++|+|++|
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 58999999999 6888776 89999999999999888889999999999999999999888999999999999999999
Q ss_pred ccccccchhccccccceeccccCCccCCC-CCcccccccccceeeccceecccccCCCCcCCCcc--cEEEeecccc--c
Q 002278 145 QLTGEIPRLIYWNEVLQYLGLRGNALTGM-LSPDMCQLTGLWYFDVRGNNLTGTIPDSIGNCTSF--EILDISYNQI--T 219 (943)
Q Consensus 145 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L--~~L~Ls~N~l--~ 219 (943)
+|+ .+|.. .+++|++|+|++|+++++ .|..|+.+++|++|++++|++++ ..+..+++| ++|++++|++ .
T Consensus 80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence 999 56665 799999999999999986 57899999999999999999986 457778888 9999999999 7
Q ss_pred CcCCCCCCcce--EeEEEecCccccccCCc-cccccCCCcEEecCCCC-------CCCCCCcccCCCCCcceEEecCCCC
Q 002278 220 GEIPYNIGFLQ--VATLSLQGNKLTGKIPE-VIGLMQALAVLDLSENE-------LVGPIPPILGNLSYTGKLYLHGNKL 289 (943)
Q Consensus 220 ~~~~~~~~~~~--L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~Ls~N~-------l~~~~~~~~~~l~~L~~L~L~~n~l 289 (943)
+..|..+.... ...+++++|.+.+.+++ .+..+++|+.|++++|. +.+.+| .+..+++|+.|++++|.+
T Consensus 154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l 232 (520)
T 2z7x_B 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIET 232 (520)
T ss_dssp SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEE
T ss_pred ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccccccc
Confidence 78887776643 66788999998775554 56789999999999997 555555 788999999999999988
Q ss_pred CCCCCCCcC---CCCcCcEEEcccCcccccccccc-----CCcccceEEEccccccCCcCcccccCC---CcCcEEEeeC
Q 002278 290 TGPIPPELG---NMSKLSYLQLQNNQLVGTIPAEL-----GKLEQLFELNLADNNLEGPIPHNISSC---TALNQFNVHG 358 (943)
Q Consensus 290 ~~~~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~-----~~l~~L~~L~L~~N~l~~~~p~~~~~l---~~L~~L~L~~ 358 (943)
++..+..+. ..++|++|++++|++++.+|..+ ..+++|+.+++++|.+ ...+..+..+ ++|+.|++++
T Consensus 233 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~ 311 (520)
T 2z7x_B 233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSG 311 (520)
T ss_dssp EHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEES
T ss_pred CHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCC
Confidence 753222111 13589999999999999999988 9999999999999999 3333555555 6799999999
Q ss_pred CcccCcccccccccCccceeeccCCcCCCCCCCCCCCCCCccEEecCCCcCCC--ccCCCcccccccceeeccccccccc
Q 002278 359 NRLSGAIPSSFRNLGSLTYLNLSRNNFKGKVPTELGRIINLDTLDLSVNNFSG--SVPASIGDLEHLLTLNLSRNHLNGL 436 (943)
Q Consensus 359 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~ 436 (943)
|.+.... .+..+++|++|++++|++++..|..+..+++|+.|++++|++++ .+|..+..+++|++|+|++|++++.
T Consensus 312 n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~ 389 (520)
T 2z7x_B 312 TRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYD 389 (520)
T ss_dssp SCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCC
T ss_pred Ccccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcc
Confidence 9987432 23688999999999999998899999999999999999999996 4567799999999999999999984
Q ss_pred CCc-cccCCCccceecccCccccccCChhhhcccccceecccCcccCCCCCCcCccccCCcccccCCccccccCCC-Ccc
Q 002278 437 LPA-EFGNLRSIQTIDMSFNQLSGSIPAELGQLQNIISLILNNNNLQGGIPDQLSNCFSLSNLNVSYNNLSGIIPP-IRN 514 (943)
Q Consensus 437 ~p~-~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~-~~~ 514 (943)
+|. .|..+++|++|+|++|++++.+|..+. ++|+.|+|++|+|+ .+|..+..+++|++|++++|+|+++++. +..
T Consensus 390 l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~ 466 (520)
T 2z7x_B 390 EKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDR 466 (520)
T ss_dssp GGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhcc
Confidence 554 589999999999999999988887765 79999999999999 7888888999999999999999987775 566
Q ss_pred cCcCCCCccccCCCCCCCC
Q 002278 515 FSRFSSNSFIGNPLLCGNW 533 (943)
Q Consensus 515 ~~~~~~~~~~~Np~~c~~~ 533 (943)
+..+..+.+.+||+.|+|+
T Consensus 467 l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 467 LTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp CTTCCEEECCSSCBCCCHH
T ss_pred CCcccEEECcCCCCcccCC
Confidence 7788888999999999853
No 30
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.3e-48 Score=468.86 Aligned_cols=516 Identities=18% Similarity=0.146 Sum_probs=398.6
Q ss_pred CccccCCCCCCCCC--CCCCCc----ceeEecCCC---------CcEEEEEcCCCCCccccCCCcCCCCCCCEEEeeCCc
Q 002278 9 NLANVLLDWDDVHN--SDFCSW----RGVFCDNSS---------LSVVSLNLSSLNLGGEISPSIGDLRNLQSIDFQGNK 73 (943)
Q Consensus 9 ~~~~~~~~w~~~~~--~~~c~w----~gv~c~~~~---------~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~ 73 (943)
|+...+++|...-. -+.|.+ ..|.|.+.+ ..++.|||++|+|++..+.+|.++++|++|||++|+
T Consensus 8 ~~~~~~~~~~~~~p~~~~~c~~~~~~~~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~ 87 (635)
T 4g8a_A 8 DDDDKLAAANSSIPESWEPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE 87 (635)
T ss_dssp -----------------CCSEEEETTTEEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred CCcchhhcccCCCCCCCCCccccCCCCEEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCc
Confidence 55567788863211 123433 347787553 357889999999996666789999999999999999
Q ss_pred ccccCCCCccCCCCCcEEeccCCCcCCccchhccccccceEEEecCcccccCCCcccCCCCCCcEEEEecccccc-ccch
Q 002278 74 LTGQIPDEIGNCGSLVHIELSDNSLYGDIPFSISKLKQLEFLNLKNNQLTGPIPSTLTQIPNLKTLDLARNQLTG-EIPR 152 (943)
Q Consensus 74 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~ 152 (943)
|++..|++|.++++|++|+|++|+|++..+..|+++++|++|+|++|++++..+..|+++++|++|+|++|++++ ..|.
T Consensus 88 i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~ 167 (635)
T 4g8a_A 88 IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE 167 (635)
T ss_dssp CCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG
T ss_pred CCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCch
Confidence 997777889999999999999999986666788999999999999999997777789999999999999999875 3678
Q ss_pred hccccccceeccccCCccCCCCCcccccccccc----eeeccceecccccCCCCcCCCcccEEEeecccccCcCC----C
Q 002278 153 LIYWNEVLQYLGLRGNALTGMLSPDMCQLTGLW----YFDVRGNNLTGTIPDSIGNCTSFEILDISYNQITGEIP----Y 224 (943)
Q Consensus 153 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~----~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~----~ 224 (943)
.+..+++|++|+|++|+|+++.+..+..+.+++ .++++.|.++.+.+..+ ....++.|++++|.....++ .
T Consensus 168 ~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~ 246 (635)
T 4g8a_A 168 YFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQ 246 (635)
T ss_dssp GGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHH
T ss_pred hhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhc
Confidence 888899999999999999998888888776654 57888898886555444 44567778888775432110 0
Q ss_pred CCCcc----------------------------eEeEEEecCccc---cccCCccccccCCCcEEecCCCCCCCCCCccc
Q 002278 225 NIGFL----------------------------QVATLSLQGNKL---TGKIPEVIGLMQALAVLDLSENELVGPIPPIL 273 (943)
Q Consensus 225 ~~~~~----------------------------~L~~L~L~~n~l---~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 273 (943)
..... .+..+.+..+.. ....+..+..+.+++.+++.+|.+... ..+
T Consensus 247 ~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~ 324 (635)
T 4g8a_A 247 GLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDF 324 (635)
T ss_dssp TTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGG
T ss_pred CCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc--ccc
Confidence 00111 122222222111 112334456677888888888877643 235
Q ss_pred CCCCCcceEEecCCCCCCCCCCCcCCCCcCcEEEcccCccccccccccCCcccceEEEccccccCC--cCcccccCCCcC
Q 002278 274 GNLSYTGKLYLHGNKLTGPIPPELGNMSKLSYLQLQNNQLVGTIPAELGKLEQLFELNLADNNLEG--PIPHNISSCTAL 351 (943)
Q Consensus 274 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L 351 (943)
.....++.|++.+|.+....+ ..+..|+.+++.+|.+... .....+++|+.|++++|.+.. ..+..+..+.+|
T Consensus 325 ~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L 399 (635)
T 4g8a_A 325 SYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISL 399 (635)
T ss_dssp GSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCC
T ss_pred ccchhhhhhhcccccccCcCc---ccchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhh
Confidence 566788999999999886544 3467788999999987633 345678999999999999863 456677788999
Q ss_pred cEEEeeCCcccCcccccccccCccceeeccCCcCCCCCC-CCCCCCCCccEEecCCCcCCCccCCCcccccccceeeccc
Q 002278 352 NQFNVHGNRLSGAIPSSFRNLGSLTYLNLSRNNFKGKVP-TELGRIINLDTLDLSVNNFSGSVPASIGDLEHLLTLNLSR 430 (943)
Q Consensus 352 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 430 (943)
+.|++..|.+.. .+..+..+++|+.++++.|+.....+ ..+..+.+++.++++.|.+.+..+..+..++.|+.|+|++
T Consensus 400 ~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~ 478 (635)
T 4g8a_A 400 KYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 478 (635)
T ss_dssp CEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTT
T ss_pred hhhhcccccccc-ccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence 999999999884 56678899999999999988765544 5688899999999999999988899999999999999999
Q ss_pred ccc-cccCCccccCCCccceecccCccccccCChhhhcccccceecccCcccCCCCCCcCccccCCcccccCCccccccC
Q 002278 431 NHL-NGLLPAEFGNLRSIQTIDMSFNQLSGSIPAELGQLQNIISLILNNNNLQGGIPDQLSNCFSLSNLNVSYNNLSGII 509 (943)
Q Consensus 431 N~l-~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~ 509 (943)
|++ .+..|..|..+++|+.|+|++|+|++..|..|.++++|+.|+|++|+|++..|..|..+++|++|||++|+|++++
T Consensus 479 N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~ 558 (635)
T 4g8a_A 479 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 558 (635)
T ss_dssp CEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCC
T ss_pred cccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCC
Confidence 985 4568899999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC-ccc-CcCCCCccccCCCCCCCC
Q 002278 510 PPI-RNF-SRFSSNSFIGNPLLCGNW 533 (943)
Q Consensus 510 ~~~-~~~-~~~~~~~~~~Np~~c~~~ 533 (943)
|.. ..+ ..+..+.+.+|||.|+|.
T Consensus 559 ~~~l~~l~~~L~~L~L~~Np~~C~C~ 584 (635)
T 4g8a_A 559 KQELQHFPSSLAFLNLTQNDFACTCE 584 (635)
T ss_dssp SSCTTCCCTTCCEEECTTCCBCCSGG
T ss_pred HHHHHhhhCcCCEEEeeCCCCcccCC
Confidence 864 334 567788899999999964
No 31
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=100.00 E-value=3.3e-50 Score=430.28 Aligned_cols=250 Identities=24% Similarity=0.300 Sum_probs=203.7
Q ss_pred hccccceEEeeeceEEEEEEEec----CCceEEEEEecccC--cccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceE
Q 002278 616 ENLSEKYIVGYGASSTVYKCALK----NSRPIAVKKLYNQY--PHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLL 689 (943)
Q Consensus 616 ~~~~~~~~lG~G~~g~Vy~~~~~----~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 689 (943)
++|+..+.||+|+||+||+|+.. .++.||+|++.+.. ......+.+|++++++++|||||++++++.+++..|+
T Consensus 24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~i 103 (304)
T 3ubd_A 24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLYL 103 (304)
T ss_dssp GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEETTEEEE
T ss_pred cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEE
Confidence 57999999999999999999863 36789999986432 2233468889999999999999999999999999999
Q ss_pred EEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccC
Q 002278 690 FYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIP 769 (943)
Q Consensus 690 v~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~ 769 (943)
||||++||+|.+++. ....+++.++..++.|++.||+|||++ +|+||||||+|||++++|++||+|||+|+...
T Consensus 104 vmEy~~gg~L~~~l~---~~~~l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~ 177 (304)
T 3ubd_A 104 ILDFLRGGDLFTRLS---KEVMFTEEDVKFYLAELALALDHLHSL---GIIYRDLKPENILLDEEGHIKLTDFGLSKESI 177 (304)
T ss_dssp EECCCTTCEEHHHHH---HHCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECTTSCEEEESSEEEEC--
T ss_pred EEEcCCCCCHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCCCHHHeEEcCCCCEEecccccceecc
Confidence 999999999999997 456799999999999999999999999 99999999999999999999999999998764
Q ss_pred CCCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCcccccC
Q 002278 770 TAMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPEVSVT 849 (943)
Q Consensus 770 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (943)
..... ....+||+.|||||++.+..|+.++||||+||++|||+||+.||.+.+.......+......+++. ++
T Consensus 178 ~~~~~-~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~~~~~~~~~i~~~~~~~p~~----~s-- 250 (304)
T 3ubd_A 178 DHEKK-AYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKDRKETMTMILKAKLGMPQF----LS-- 250 (304)
T ss_dssp ---CC-CCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTT----SC--
T ss_pred CCCcc-ccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCcCHHHHHHHHHcCCCCCCCc----CC--
Confidence 43222 234579999999999999999999999999999999999999999877665555444433322222 11
Q ss_pred ccCHHHHHHHHHHHHHccCCCCCCCCC-----HHHHHHHHh
Q 002278 850 CVDLSAVRKTFQLALLCTKRYPSERPT-----MQEVARVLV 885 (943)
Q Consensus 850 ~~~~~~~~~l~~l~~~cl~~dP~~RPt-----~~el~~~L~ 885 (943)
..+.+++.+||+.||++||| ++|+++|-+
T Consensus 251 -------~~~~~li~~~L~~dP~~R~ta~~~~~~eil~Hp~ 284 (304)
T 3ubd_A 251 -------PEAQSLLRMLFKRNPANRLGAGPDGVEEIKRHSF 284 (304)
T ss_dssp -------HHHHHHHHHHTCSSGGGSTTCSTTTHHHHHTSGG
T ss_pred -------HHHHHHHHHHcccCHHHCCCCCcCCHHHHHcCcc
Confidence 35678999999999999998 478887654
No 32
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=100.00 E-value=5.6e-49 Score=431.67 Aligned_cols=269 Identities=25% Similarity=0.307 Sum_probs=217.6
Q ss_pred CHHHHHHHhhccccceEEeeeceEEEEEEEecC------CceEEEEEecccCc-ccHHHHHHHHHHHhcCCC-CCcceee
Q 002278 607 TFDDIMRSTENLSEKYIVGYGASSTVYKCALKN------SRPIAVKKLYNQYP-HNLREFETELETIGSIRH-RNIVSLH 678 (943)
Q Consensus 607 ~~~~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~------~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h-~niv~l~ 678 (943)
+.++.....++|+..+.||+|+||+||+|.+.. ++.||||++..... ...+.+.+|++++++++| ||||+++
T Consensus 55 ~~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~ 134 (353)
T 4ase_A 55 DASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLL 134 (353)
T ss_dssp CHHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred CCcccEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEEE
Confidence 334444566889999999999999999998753 25799999976543 345679999999999975 8999999
Q ss_pred eEEecC-CcceEEEEEccCCChhhhccCCC-------------CCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCC
Q 002278 679 GYALSP-YGNLLFYDYMVNGSLWDLLHGPS-------------KKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDV 744 (943)
Q Consensus 679 ~~~~~~-~~~~lv~e~~~~g~L~~~l~~~~-------------~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dl 744 (943)
|+|.++ ...++|||||++|+|.++|+... ....+++.++..++.|||.||+|||++ +||||||
T Consensus 135 g~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~---~iiHRDL 211 (353)
T 4ase_A 135 GACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDL 211 (353)
T ss_dssp EEECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHT---TCCCSCC
T ss_pred EEEEecCCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhhC---CeecCcc
Confidence 999765 46899999999999999996322 134589999999999999999999999 9999999
Q ss_pred CCccEEECCCCceeecccccccccCCCCCc-eeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHh-CCCCCCCC
Q 002278 745 KSSNILIDENFDAHLSDFGIARCIPTAMPH-ASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILT-GKKAVDNE 822 (943)
Q Consensus 745 kp~Nill~~~~~~kl~DFGla~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-G~~p~~~~ 822 (943)
||+|||+++++.+||+|||+|+........ ......||+.|||||++.+..|+.++|||||||++|||+| |+.||.+.
T Consensus 212 K~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~ 291 (353)
T 4ase_A 212 AARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGV 291 (353)
T ss_dssp SGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTC
T ss_pred CccceeeCCCCCEEECcchhhhhcccCCCceeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCCCC
Confidence 999999999999999999999977544332 3345679999999999999999999999999999999998 99999876
Q ss_pred ccHHHHHHHhccccccccccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCC
Q 002278 823 SNLHQLIMSKADDNTVMEAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLP 889 (943)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~ 889 (943)
.....+........ .+..+..+ ...+.+++..||+.||++|||+.|++++|+.++.
T Consensus 292 ~~~~~~~~~i~~g~------~~~~p~~~-----~~~~~~li~~c~~~dP~~RPt~~eil~~L~~llq 347 (353)
T 4ase_A 292 KIDEEFCRRLKEGT------RMRAPDYT-----TPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQ 347 (353)
T ss_dssp CCSHHHHHHHHHTC------CCCCCTTC-----CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC------CCCCCccC-----CHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHHH
Confidence 54443333322211 11111111 2467789999999999999999999999987653
No 33
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=100.00 E-value=1.9e-49 Score=429.42 Aligned_cols=264 Identities=25% Similarity=0.334 Sum_probs=204.3
Q ss_pred hccccceEEeeeceEEEEEEEecCCceEEEEEecccCcccHHHHHHHHHHHhcCCCCCcceeeeEEecCC----cceEEE
Q 002278 616 ENLSEKYIVGYGASSTVYKCALKNSRPIAVKKLYNQYPHNLREFETELETIGSIRHRNIVSLHGYALSPY----GNLLFY 691 (943)
Q Consensus 616 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~----~~~lv~ 691 (943)
++|...+.||+|+||+||+|+++ |+.||||++.... .....++.|+..+.+++|||||++++++.+++ ..++||
T Consensus 3 r~i~L~~~iG~G~fG~Vy~~~~~-g~~VAvK~l~~~~-~~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~ 80 (303)
T 3hmm_A 3 RTIVLQESIGKGRFGEVWRGKWR-GEEVAVKIFSSRE-ERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVS 80 (303)
T ss_dssp GGEEEEEEEEECSSSEEEEEEET-TEEEEEEEECGGG-HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEE
T ss_pred cEEEEEEEEeeCCCeEEEEEEEC-CEEEEEEEECccc-hhhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEEEe
Confidence 46778889999999999999985 8899999986432 11223345566667889999999999998654 468999
Q ss_pred EEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhC-----CCCCeEecCCCCccEEECCCCceeeccccccc
Q 002278 692 DYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHD-----CNPRIIHRDVKSSNILIDENFDAHLSDFGIAR 766 (943)
Q Consensus 692 e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~-----~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~ 766 (943)
||+++|+|.++++ ...++|+.+.+++.|+|.||+|||++ +.++||||||||+|||+++++++||+|||+|+
T Consensus 81 Ey~~~gsL~~~l~----~~~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~ 156 (303)
T 3hmm_A 81 DYHEHGSLFDYLN----RYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAV 156 (303)
T ss_dssp ECCTTCBHHHHHH----HCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCE
T ss_pred cCCCCCcHHHHHH----hCCCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeCCCCc
Confidence 9999999999996 34689999999999999999999975 24589999999999999999999999999998
Q ss_pred ccCCCCCc---eeeeEecccceeCccccccC------CCCCcchhhhHHHHHHHHHhCCCCCCCCc--------------
Q 002278 767 CIPTAMPH---ASTFVLGTIGYIDPEYAHTS------RLNEKSDVYSFGIVLLEILTGKKAVDNES-------------- 823 (943)
Q Consensus 767 ~~~~~~~~---~~~~~~gt~~y~aPE~~~~~------~~~~~~DvwSlGvil~elltG~~p~~~~~-------------- 823 (943)
........ .....+||+.|||||++.+. .++.++|||||||++|||+||++||....
T Consensus 157 ~~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~ 236 (303)
T 3hmm_A 157 RHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDP 236 (303)
T ss_dssp EEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSC
T ss_pred cccCCCCceeeecccccccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCccccccccchhcccccc
Confidence 77544322 22345799999999998764 36789999999999999999988764221
Q ss_pred cHHHHHHHhccccccccccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCCC
Q 002278 824 NLHQLIMSKADDNTVMEAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLPA 890 (943)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~~ 890 (943)
.......... ....+|.++......+....+.+++.+||+.||++||||.||++.|+.+...
T Consensus 237 ~~~~~~~~~~-----~~~~rp~~p~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~l~~~ 298 (303)
T 3hmm_A 237 SVEEMRKVVC-----EQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQ 298 (303)
T ss_dssp CHHHHHHHHT-----TSCCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHh-----cccCCCCCCccccchHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHHHHHH
Confidence 1111111111 1223444444333445667888999999999999999999999999876543
No 34
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.4e-48 Score=475.37 Aligned_cols=442 Identities=17% Similarity=0.235 Sum_probs=259.3
Q ss_pred CCCCEEEeeCCcccccCCCCccCCCCCcEEec-cCCCcCCccchhcccc---------ccceEEEe-------cCcccc-
Q 002278 62 RNLQSIDFQGNKLTGQIPDEIGNCGSLVHIEL-SDNSLYGDIPFSISKL---------KQLEFLNL-------KNNQLT- 123 (943)
Q Consensus 62 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L-s~N~l~~~~p~~~~~l---------~~L~~L~L-------s~n~l~- 123 (943)
..++.|+|++|+++|.+|.+|++|++|++|+| ++|.+.|..|...... ..++..++ ....+.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57999999999999999999999999999999 8998876533221100 00000000 000000
Q ss_pred ----------cCCCcccCCCCCCcEEEEec--cccccccchhccccccceeccccCCccCC-----------------CC
Q 002278 124 ----------GPIPSTLTQIPNLKTLDLAR--NQLTGEIPRLIYWNEVLQYLGLRGNALTG-----------------ML 174 (943)
Q Consensus 124 ----------~~~~~~~~~l~~L~~L~Ls~--N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----------------~~ 174 (943)
...+........++.+.+.. |++++ +|..|..+++|++|+|++|++++ ..
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 00000011112222222222 44444 44445555555555555555554 24
Q ss_pred Ccccc--cccccceeeccceecccccCCCCcCCCcccEEEeeccc-ccC-cCCCCCCc--------ceEeEEEecCcccc
Q 002278 175 SPDMC--QLTGLWYFDVRGNNLTGTIPDSIGNCTSFEILDISYNQ-ITG-EIPYNIGF--------LQVATLSLQGNKLT 242 (943)
Q Consensus 175 ~~~~~--~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~-l~~-~~~~~~~~--------~~L~~L~L~~n~l~ 242 (943)
|..++ .+++|++|+|++|++.+.+|..|+++++|++|+|++|+ +++ .+|..++. .+|+.|+|++|.++
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 55655 77788888888887777777778888888888888887 765 45543321 24555555555555
Q ss_pred ccCCc--cccccCCCcEEecCCCCCCCCCCcccCCCCCcceEEecCCCCCCCCCCCcCCCCc-CcEEEcccCcccccccc
Q 002278 243 GKIPE--VIGLMQALAVLDLSENELVGPIPPILGNLSYTGKLYLHGNKLTGPIPPELGNMSK-LSYLQLQNNQLVGTIPA 319 (943)
Q Consensus 243 ~~~~~--~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~N~l~~~~~~ 319 (943)
.+|. .+..+++|+.|+|++|.+. .+| .|..+++|+.|+|++|+++ .+|..+..+++ |+.|+|++|+++ .+|.
T Consensus 562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~ 636 (876)
T 4ecn_A 562 -EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPN 636 (876)
T ss_dssp -BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCS
T ss_pred -ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCch
Confidence 4555 5666666666666666666 455 6666666666666666666 55666666666 666666666666 5555
Q ss_pred ccCCccc--ceEEEccccccCCcCcccc---c--CCCcCcEEEeeCCcccCcccccccccCccceeeccCCcCCCCCCCC
Q 002278 320 ELGKLEQ--LFELNLADNNLEGPIPHNI---S--SCTALNQFNVHGNRLSGAIPSSFRNLGSLTYLNLSRNNFKGKVPTE 392 (943)
Q Consensus 320 ~~~~l~~--L~~L~L~~N~l~~~~p~~~---~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 392 (943)
.+..++. |+.|+|++|++.+.+|... . .+++|+.|+|++|+|+.+.+..+..+++|+.|+|++|+++ .+|..
T Consensus 637 ~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~ 715 (876)
T 4ecn_A 637 IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPEN 715 (876)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTT
T ss_pred hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChH
Confidence 5555443 6666666666665444322 1 2235555555555555333333335555555555555555 33332
Q ss_pred CCCCCCccEEecCCCcCCCccCCCcccccccceeecccccccccCCcccc--CCCccceecccCccccccCChhhhcccc
Q 002278 393 LGRIINLDTLDLSVNNFSGSVPASIGDLEHLLTLNLSRNHLNGLLPAEFG--NLRSIQTIDMSFNQLSGSIPAELGQLQN 470 (943)
Q Consensus 393 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 470 (943)
+.... +..+.++++|+.|+|++|+|+ .+|..+. .+++|+.|+|++|+|++ +|..+..+++
T Consensus 716 ~~~~~----------------~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~ 777 (876)
T 4ecn_A 716 SLKPK----------------DGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQ 777 (876)
T ss_dssp SSSCT----------------TSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTT
T ss_pred Hhccc----------------cccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCC
Confidence 22211 000112235555555555555 3445544 55555555555555554 4555555555
Q ss_pred cceecc------cCcccCCCCCCcCccccCCcccccCCccccccCCCCcccCcCCCCccccCCCCC
Q 002278 471 IISLIL------NNNNLQGGIPDQLSNCFSLSNLNVSYNNLSGIIPPIRNFSRFSSNSFIGNPLLC 530 (943)
Q Consensus 471 L~~L~L------~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~~~~~~~~Np~~c 530 (943)
|+.|+| ++|++.+.+|..+.++++|+.|+|++|+| +.+|.. ....+..+.+.+||+..
T Consensus 778 L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~-l~~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 778 LKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK-LTPQLYILDIADNPNIS 841 (876)
T ss_dssp CCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCSSSCEEECCSCTTCE
T ss_pred CCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHh-hcCCCCEEECCCCCCCc
Confidence 555555 45899999999999999999999999999 555543 23577888899998654
No 35
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=7.7e-49 Score=471.03 Aligned_cols=452 Identities=18% Similarity=0.287 Sum_probs=382.3
Q ss_pred CCCCEEEeeCCcccccCCCCccCCCCCcEEeccCCCc------CC------ccchhccccccceEEEecCcccccCCCcc
Q 002278 62 RNLQSIDFQGNKLTGQIPDEIGNCGSLVHIELSDNSL------YG------DIPFSISKLKQLEFLNLKNNQLTGPIPST 129 (943)
Q Consensus 62 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l------~~------~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~ 129 (943)
..++.|+|++|+++|.+|.+|++|++|++|+|++|.+ .+ .+|... +.+|+ +++++|.+.+.+|..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED 157 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence 4789999999999999999999999999999999976 22 344443 66777 888888888777776
Q ss_pred cCCC-CCCcEEEEeccccccccchhccccccceecccc--CCccCCCCCcccccccccceeeccceecccc---------
Q 002278 130 LTQI-PNLKTLDLARNQLTGEIPRLIYWNEVLQYLGLR--GNALTGMLSPDMCQLTGLWYFDVRGNNLTGT--------- 197 (943)
Q Consensus 130 ~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~--~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~--------- 197 (943)
+..+ ..+..+++....+.. .....++.+.+. +|++++ .|..++++++|++|+|++|++++.
T Consensus 158 ~~~~~~~l~~~~l~~~~~~~------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~ 230 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIKK------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENE 230 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCCC------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCT
T ss_pred HHHHHHHHhhcCcccccccc------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCcccccccccccccc
Confidence 6632 233333333322221 112234444443 588888 677899999999999999999985
Q ss_pred --------cCCCCc--CCCcccEEEeecccccCcCCCCCCc-ceEeEEEecCcc-ccc-cCCcccccc------CCCcEE
Q 002278 198 --------IPDSIG--NCTSFEILDISYNQITGEIPYNIGF-LQVATLSLQGNK-LTG-KIPEVIGLM------QALAVL 258 (943)
Q Consensus 198 --------~~~~l~--~l~~L~~L~Ls~N~l~~~~~~~~~~-~~L~~L~L~~n~-l~~-~~~~~l~~l------~~L~~L 258 (943)
+|..++ ++++|++|+|++|++.+.+|..++. .+|++|++++|+ +++ .+|..++.+ ++|++|
T Consensus 231 ~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L 310 (636)
T 4eco_A 231 NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQII 310 (636)
T ss_dssp TSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEE
T ss_pred ccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEE
Confidence 899999 9999999999999999999987764 589999999998 998 899988887 999999
Q ss_pred ecCCCCCCCCCCc--ccCCCCCcceEEecCCCCCCCCCCCcCCCCcCcEEEcccCccccccccccCCccc-ceEEEcccc
Q 002278 259 DLSENELVGPIPP--ILGNLSYTGKLYLHGNKLTGPIPPELGNMSKLSYLQLQNNQLVGTIPAELGKLEQ-LFELNLADN 335 (943)
Q Consensus 259 ~Ls~N~l~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~L~~N 335 (943)
++++|+++ .+|. .++++++|+.|+|++|+++|.+| .|..+++|++|++++|+++ .+|..+..+++ |++|++++|
T Consensus 311 ~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N 387 (636)
T 4eco_A 311 YIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHN 387 (636)
T ss_dssp ECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSS
T ss_pred ECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCC
Confidence 99999999 7888 89999999999999999998888 9999999999999999999 88889999999 999999999
Q ss_pred ccCCcCcccccCCC--cCcEEEeeCCcccCccccccc-------ccCccceeeccCCcCCCCCCCCCCCCCCccEEecCC
Q 002278 336 NLEGPIPHNISSCT--ALNQFNVHGNRLSGAIPSSFR-------NLGSLTYLNLSRNNFKGKVPTELGRIINLDTLDLSV 406 (943)
Q Consensus 336 ~l~~~~p~~~~~l~--~L~~L~L~~N~l~~~~~~~~~-------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 406 (943)
+++ .+|..+..++ +|+.|++++|++++..|..|. .+++|+.|+|++|+++...+..+..+++|+.|+|++
T Consensus 388 ~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~ 466 (636)
T 4eco_A 388 KLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMG 466 (636)
T ss_dssp CCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCS
T ss_pred cCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCC
Confidence 999 7788887765 999999999999999999998 888999999999999954444456789999999999
Q ss_pred CcCCCccCCC-cccc-------cccceeecccccccccCCcccc--CCCccceecccCccccccCChhhhcccccceecc
Q 002278 407 NNFSGSVPAS-IGDL-------EHLLTLNLSRNHLNGLLPAEFG--NLRSIQTIDMSFNQLSGSIPAELGQLQNIISLIL 476 (943)
Q Consensus 407 N~l~~~~~~~-~~~l-------~~L~~L~Ls~N~l~~~~p~~~~--~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 476 (943)
|+++ .+|.. +..+ ++|+.|+|++|+++ .+|..+. .+++|+.|+|++|+|++ +|..+..+++|+.|+|
T Consensus 467 N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~L 543 (636)
T 4eco_A 467 NMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGI 543 (636)
T ss_dssp SCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEEC
T ss_pred CCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEEC
Confidence 9999 55654 3333 39999999999999 6788887 99999999999999997 9999999999999999
Q ss_pred ------cCcccCCCCCCcCccccCCcccccCCccccccCCCCcccCcCCCCccccCCCCCCC
Q 002278 477 ------NNNNLQGGIPDQLSNCFSLSNLNVSYNNLSGIIPPIRNFSRFSSNSFIGNPLLCGN 532 (943)
Q Consensus 477 ------~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~~~~~~~~Np~~c~~ 532 (943)
++|++.+.+|..+..+++|+.|+|++|+|+.++..+ ...+..+.+.+||+.|-.
T Consensus 544 s~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~--~~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 544 RNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI--TPNISVLDIKDNPNISID 603 (636)
T ss_dssp CSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCCBCCSCC--CTTCCEEECCSCTTCEEE
T ss_pred CCCcccccCcccccChHHHhcCCCCCEEECCCCcCCccCHhH--hCcCCEEECcCCCCcccc
Confidence 568899999999999999999999999995544432 267888889999988743
No 36
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*
Probab=100.00 E-value=9.7e-48 Score=413.57 Aligned_cols=254 Identities=19% Similarity=0.289 Sum_probs=194.2
Q ss_pred hhccccceEEeeeceEEEEEEEec-CCceEEEEEecccCc-ccHHHHHHHHHHHhcCCCCCcceeeeEEecCCc------
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYP-HNLREFETELETIGSIRHRNIVSLHGYALSPYG------ 686 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~------ 686 (943)
.++|+..+.||+|+||+||+|+++ +++.||||++..... ...+.+.+|++++++++|||||++++++.+.+.
T Consensus 4 l~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~ 83 (299)
T 4g31_A 4 LTDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQP 83 (299)
T ss_dssp HHHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC-------
T ss_pred chhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCccccccc
Confidence 356899999999999999999976 588999999865443 344678999999999999999999999875442
Q ss_pred ------ceEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeec
Q 002278 687 ------NLLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLS 760 (943)
Q Consensus 687 ------~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~ 760 (943)
.|+||||+++|+|.+++.........++..++.++.||+.||+|||++ +||||||||+|||++.++.+||+
T Consensus 84 ~~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH~~---~IiHRDlKp~NILl~~~~~vKl~ 160 (299)
T 4g31_A 84 SSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLHSK---GLMHRDLKPSNIFFTMDDVVKVG 160 (299)
T ss_dssp ---CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEEC
T ss_pred cCCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHC---cCccccCcHHHeEECCCCcEEEc
Confidence 589999999999999998655445667788999999999999999999 99999999999999999999999
Q ss_pred ccccccccCCCCCc-----------eeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHH
Q 002278 761 DFGIARCIPTAMPH-----------ASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLI 829 (943)
Q Consensus 761 DFGla~~~~~~~~~-----------~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~ 829 (943)
|||+|+.+...... ..+..+||+.|||||++.+..|+.++||||+||++|||++ ||.+........
T Consensus 161 DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~---Pf~~~~~~~~~~ 237 (299)
T 4g31_A 161 DFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFSTQMERVRTL 237 (299)
T ss_dssp CCCCC--------------------------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS---CCSSHHHHHHHH
T ss_pred cCccceecCCCccccccccccccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc---CCCCccHHHHHH
Confidence 99999877543221 1234579999999999999999999999999999999996 776543322222
Q ss_pred HHhccccccccccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 002278 830 MSKADDNTVMEAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLV 885 (943)
Q Consensus 830 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~ 885 (943)
..... ... ++... .......+++.+||+.||++|||+.|+++|-+
T Consensus 238 ~~~~~-~~~----p~~~~------~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~ 282 (299)
T 4g31_A 238 TDVRN-LKF----PPLFT------QKYPCEYVMVQDMLSPSPMERPEAINIIENAV 282 (299)
T ss_dssp HHHHT-TCC----CHHHH------HHCHHHHHHHHHHTCSSGGGSCCHHHHHTSGG
T ss_pred HHHhc-CCC----CCCCc------ccCHHHHHHHHHHcCCChhHCcCHHHHhcCHh
Confidence 21111 111 11111 12234567999999999999999999998743
No 37
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=6e-46 Score=449.06 Aligned_cols=461 Identities=20% Similarity=0.212 Sum_probs=383.0
Q ss_pred cEEEEEcCCCCCccccCCCcCCCCCCCEEEeeCCcccccCCCCccCCCCCcEEeccCCCcCCccchhccccccceEEEec
Q 002278 39 SVVSLNLSSLNLGGEISPSIGDLRNLQSIDFQGNKLTGQIPDEIGNCGSLVHIELSDNSLYGDIPFSISKLKQLEFLNLK 118 (943)
Q Consensus 39 ~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 118 (943)
+++.|||++|+|++..+.+|+++++|++|+|++|+|++..++.|.++++|++|+|++|++++..+..|+++++|++|+|+
T Consensus 77 ~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls 156 (635)
T 4g8a_A 77 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA 156 (635)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccc
Confidence 57899999999997667789999999999999999997667789999999999999999997777789999999999999
Q ss_pred CcccccC-CCcccCCCCCCcEEEEeccccccccchhccccccce----eccccCCccCCCCCcccccccccceeecccee
Q 002278 119 NNQLTGP-IPSTLTQIPNLKTLDLARNQLTGEIPRLIYWNEVLQ----YLGLRGNALTGMLSPDMCQLTGLWYFDVRGNN 193 (943)
Q Consensus 119 ~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~----~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 193 (943)
+|++++. .|..+..+++|++|+|++|+|++..+..|..+.+++ .++++.|.++.+.+..+.. ..+..+++++|.
T Consensus 157 ~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~-~~~~~l~l~~n~ 235 (635)
T 4g8a_A 157 HNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNNF 235 (635)
T ss_dssp SSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCC
T ss_pred cCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccc-hhhhhhhhhccc
Confidence 9999864 578899999999999999999988888888776654 6789999999887766554 356677887775
Q ss_pred ccc-ccCCCCcCCCcccEEEe------------------------------ecccccC----cCCCCCCcceEeEEEecC
Q 002278 194 LTG-TIPDSIGNCTSFEILDI------------------------------SYNQITG----EIPYNIGFLQVATLSLQG 238 (943)
Q Consensus 194 i~~-~~~~~l~~l~~L~~L~L------------------------------s~N~l~~----~~~~~~~~~~L~~L~L~~ 238 (943)
... ..+..+..+..++...+ ..+.... .........++..+.+.+
T Consensus 236 ~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 315 (635)
T 4g8a_A 236 DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVS 315 (635)
T ss_dssp SSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEES
T ss_pred ccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccc
Confidence 432 12223344444444433 3332211 111112234688899999
Q ss_pred ccccccCCccccccCCCcEEecCCCCCCCCCCcccCCCCCcceEEecCCCCCCCCCCCcCCCCcCcEEEcccCcccc--c
Q 002278 239 NKLTGKIPEVIGLMQALAVLDLSENELVGPIPPILGNLSYTGKLYLHGNKLTGPIPPELGNMSKLSYLQLQNNQLVG--T 316 (943)
Q Consensus 239 n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~ 316 (943)
+.+... ..+....+|+.|++++|.+....+. .+..|+.+++.+|.+... ..+..+++|+.|++++|.+.. .
T Consensus 316 ~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~ 388 (635)
T 4g8a_A 316 VTIERV--KDFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGC 388 (635)
T ss_dssp CEEEEC--GGGGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEE
T ss_pred cccccc--cccccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCCC--cccccccccccchhhccccccccc
Confidence 988754 3466778999999999998865543 456788999999988743 345678999999999999863 3
Q ss_pred cccccCCcccceEEEccccccCCcCcccccCCCcCcEEEeeCCcccCccc-ccccccCccceeeccCCcCCCCCCCCCCC
Q 002278 317 IPAELGKLEQLFELNLADNNLEGPIPHNISSCTALNQFNVHGNRLSGAIP-SSFRNLGSLTYLNLSRNNFKGKVPTELGR 395 (943)
Q Consensus 317 ~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 395 (943)
.+..+..+.+|+.|++..|.+. ..+..+..+++|+.+++..|.+....+ ..|..+.+++.++++.|.+.+..+..+..
T Consensus 389 ~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~ 467 (635)
T 4g8a_A 389 CSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG 467 (635)
T ss_dssp CCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTT
T ss_pred cccchhhhhhhhhhhccccccc-cccccccccccccchhhhhcccccccccccccccccccccccccccccccccccccc
Confidence 4566778889999999999987 456678899999999999988875544 57889999999999999999999999999
Q ss_pred CCCccEEecCCCcC-CCccCCCcccccccceeecccccccccCCccccCCCccceecccCccccccCChhhhccccccee
Q 002278 396 IINLDTLDLSVNNF-SGSVPASIGDLEHLLTLNLSRNHLNGLLPAEFGNLRSIQTIDMSFNQLSGSIPAELGQLQNIISL 474 (943)
Q Consensus 396 l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 474 (943)
++.|+.|++++|.+ .+..|..|..+++|++|+|++|+|+++.|..|.++++|++|+|++|+|++..|..|..+++|+.|
T Consensus 468 ~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L 547 (635)
T 4g8a_A 468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVL 547 (635)
T ss_dssp CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEE
T ss_pred chhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEE
Confidence 99999999999985 44678899999999999999999999999999999999999999999998888999999999999
Q ss_pred cccCcccCCCCCCcCccc-cCCcccccCCcccccc
Q 002278 475 ILNNNNLQGGIPDQLSNC-FSLSNLNVSYNNLSGI 508 (943)
Q Consensus 475 ~L~~N~l~~~~p~~~~~l-~~L~~L~ls~N~l~~~ 508 (943)
+|++|+|++..|..+..+ ++|+.|+|++|+++..
T Consensus 548 ~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 548 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp ECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred ECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 999999999999999988 6899999999999863
No 38
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=7.2e-47 Score=449.11 Aligned_cols=450 Identities=18% Similarity=0.173 Sum_probs=287.3
Q ss_pred EEEEcCCCCCccccCCCcCCCCCCCEEEeeCCcccccCCCCccCCCCCcEEeccCCCcCCccchhccccccceEEEecCc
Q 002278 41 VSLNLSSLNLGGEISPSIGDLRNLQSIDFQGNKLTGQIPDEIGNCGSLVHIELSDNSLYGDIPFSISKLKQLEFLNLKNN 120 (943)
Q Consensus 41 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n 120 (943)
..+|+++|+++ .+|..+. ++|++|+|++|+|++..|..|.++++|++|+|++|+|++..|.+|+++++|++|+|++|
T Consensus 34 ~~l~ls~~~L~-~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 34 SMVDYSNRNLT-HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CEEECTTSCCC-SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEcCCCCCc-cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 57999999999 5887665 78999999999999777788999999999999999999777888999999999999999
Q ss_pred ccccCCCcccCCCCCCcEEEEeccccccc-cchhccccccceeccccCCccCCCCCccccccccc--ceeeccceec--c
Q 002278 121 QLTGPIPSTLTQIPNLKTLDLARNQLTGE-IPRLIYWNEVLQYLGLRGNALTGMLSPDMCQLTGL--WYFDVRGNNL--T 195 (943)
Q Consensus 121 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L--~~L~L~~N~i--~ 195 (943)
+++ .+|.. .+++|++|+|++|++++. .|..|..+++|++|+|++|++++. .+..+++| +.|++++|++ +
T Consensus 111 ~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~ 184 (562)
T 3a79_B 111 RLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIK 184 (562)
T ss_dssp CCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCC
T ss_pred cCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccccccc
Confidence 998 55655 799999999999999863 468888899999999999988864 34445555 8888888888 7
Q ss_pred cccCCCCcCCC-cccEEEeecccccCcCCCCC--CcceEeEEEecCcc-----ccccCCccccccCCCcEEecCCCCCCC
Q 002278 196 GTIPDSIGNCT-SFEILDISYNQITGEIPYNI--GFLQVATLSLQGNK-----LTGKIPEVIGLMQALAVLDLSENELVG 267 (943)
Q Consensus 196 ~~~~~~l~~l~-~L~~L~Ls~N~l~~~~~~~~--~~~~L~~L~L~~n~-----l~~~~~~~l~~l~~L~~L~Ls~N~l~~ 267 (943)
+..|..+..+. ..-.+++++|.+.+.++... ...+|+.|++++|+ +.+ ....+..+++|+.|+++++.+.+
T Consensus 185 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~-~~~~l~~l~~L~~L~L~~~~l~~ 263 (562)
T 3a79_B 185 GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMT-FLSELTRGPTLLNVTLQHIETTW 263 (562)
T ss_dssp SSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHH-HHHHHHSCSSCEEEEEEEEEECH
T ss_pred ccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHH-HHHHHhccCcceEEEecCCcCcH
Confidence 77777777655 12255777777766544321 23457777777764 221 12345556666666666665543
Q ss_pred CC----CcccCCCCCcceEEecCCCCCCCCCCCc-----CCCCcCcEEEcccCccccccc-cccCCc---ccceEEEccc
Q 002278 268 PI----PPILGNLSYTGKLYLHGNKLTGPIPPEL-----GNMSKLSYLQLQNNQLVGTIP-AELGKL---EQLFELNLAD 334 (943)
Q Consensus 268 ~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~N~l~~~~~-~~~~~l---~~L~~L~L~~ 334 (943)
.. +..+ ..++|++|++++|.+++.+|..+ ..++.|+.++++.|.+ .+| ..+..+ .+|++|++++
T Consensus 264 ~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~ 340 (562)
T 3a79_B 264 KCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISD 340 (562)
T ss_dssp HHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEES
T ss_pred HHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccC
Confidence 11 1111 12356666666666666566555 5555555555555555 122 222222 3466666666
Q ss_pred cccCCcCcccccCCCcCcEEEeeCCcccCcccccccccCccceeeccCCcCCCC--CCCCCCCCCCccEEecCCCcCCCc
Q 002278 335 NNLEGPIPHNISSCTALNQFNVHGNRLSGAIPSSFRNLGSLTYLNLSRNNFKGK--VPTELGRIINLDTLDLSVNNFSGS 412 (943)
Q Consensus 335 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~ 412 (943)
|.+.... .+..+++|++|++++|++++..|..|..+++|+.|+|++|++++. .|..+..+++|+.|++++|++++.
T Consensus 341 n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~ 418 (562)
T 3a79_B 341 TPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSH 418 (562)
T ss_dssp SCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSC
T ss_pred CCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCc
Confidence 6654221 114555666666666666655555666666666666666666542 124455566666666666666552
Q ss_pred cC-CCcccccccceeecccccccccCCccccCCCccceecccCccccccCChhhhcccccceecccCcccCCCCCCcCcc
Q 002278 413 VP-ASIGDLEHLLTLNLSRNHLNGLLPAEFGNLRSIQTIDMSFNQLSGSIPAELGQLQNIISLILNNNNLQGGIPDQLSN 491 (943)
Q Consensus 413 ~~-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 491 (943)
+| ..+..+++|+.|+|++|++++..|..+. ++|++|+|++|+|+ .+|..+..+++|+.|+|++|+|++..+..+..
T Consensus 419 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~ 495 (562)
T 3a79_B 419 AYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDR 495 (562)
T ss_dssp CSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTT
T ss_pred cChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhc
Confidence 33 2355556666666666666554444433 45666666666665 45555556666666666666665322222555
Q ss_pred ccCCcccccCCcccccc
Q 002278 492 CFSLSNLNVSYNNLSGI 508 (943)
Q Consensus 492 l~~L~~L~ls~N~l~~~ 508 (943)
+++|+.|++++|++++.
T Consensus 496 l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 496 LTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp CTTCCCEECCSCCBCCC
T ss_pred CCCCCEEEecCCCcCCC
Confidence 55666666665555543
No 39
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.5e-46 Score=444.41 Aligned_cols=457 Identities=19% Similarity=0.189 Sum_probs=381.0
Q ss_pred CCCCCEEEeeCCcccccCCCCccCCCCCcEEeccCCCcCCccchhccccccceEEEecCcccccCCCcccCCCCCCcEEE
Q 002278 61 LRNLQSIDFQGNKLTGQIPDEIGNCGSLVHIELSDNSLYGDIPFSISKLKQLEFLNLKNNQLTGPIPSTLTQIPNLKTLD 140 (943)
Q Consensus 61 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 140 (943)
+...+++|+++|+++ .+|..+. ++|++|+|++|+|++..|.+|+++++|++|+|++|++++..|+.|.++++|++|+
T Consensus 30 ~~~~~~l~ls~~~L~-~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 30 NELESMVDYSNRNLT-HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp ---CCEEECTTSCCC-SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred cCCCcEEEcCCCCCc-cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence 334589999999999 5887664 8999999999999988888999999999999999999988899999999999999
Q ss_pred EeccccccccchhccccccceeccccCCccCCCC-CcccccccccceeeccceecccccCCCCcCCCcc--cEEEeeccc
Q 002278 141 LARNQLTGEIPRLIYWNEVLQYLGLRGNALTGML-SPDMCQLTGLWYFDVRGNNLTGTIPDSIGNCTSF--EILDISYNQ 217 (943)
Q Consensus 141 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L--~~L~Ls~N~ 217 (943)
|++|+|+ .+|.. .+++|++|+|++|+++++. |..|.++++|++|++++|++++. .+..+++| ++|++++|+
T Consensus 107 Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~ 180 (562)
T 3a79_B 107 VSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVS 180 (562)
T ss_dssp CTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESS
T ss_pred CCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccc
Confidence 9999999 56655 7999999999999999976 57999999999999999999863 45666666 999999999
Q ss_pred c--cCcCCCCCCcce--EeEEEecCccccccCCc-cccccCCCcEEecCCCCCC----CCCCcccCCCCCcceEEecCCC
Q 002278 218 I--TGEIPYNIGFLQ--VATLSLQGNKLTGKIPE-VIGLMQALAVLDLSENELV----GPIPPILGNLSYTGKLYLHGNK 288 (943)
Q Consensus 218 l--~~~~~~~~~~~~--L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~Ls~N~l~----~~~~~~~~~l~~L~~L~L~~n~ 288 (943)
+ ++..|..+.... ...+++++|.+.+.+++ .+..+++|+.|++++|... ......|..+++|+.|+|.++.
T Consensus 181 l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~ 260 (562)
T 3a79_B 181 YHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIE 260 (562)
T ss_dssp CCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEE
T ss_pred ccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCc
Confidence 9 877777765543 44678899998875554 4567899999999999621 0112356778899999999888
Q ss_pred CCCCC----CCCcCCCCcCcEEEcccCcccccccccc-----CCcccceEEEccccccCCcCc-ccccCC---CcCcEEE
Q 002278 289 LTGPI----PPELGNMSKLSYLQLQNNQLVGTIPAEL-----GKLEQLFELNLADNNLEGPIP-HNISSC---TALNQFN 355 (943)
Q Consensus 289 l~~~~----~~~~~~l~~L~~L~L~~N~l~~~~~~~~-----~~l~~L~~L~L~~N~l~~~~p-~~~~~l---~~L~~L~ 355 (943)
+++.. +.. ...++|++|++++|.+++.+|..+ ..++.|+.++++.|.+ .+| ..+..+ .+|+.|+
T Consensus 261 l~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~ 337 (562)
T 3a79_B 261 TTWKCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLS 337 (562)
T ss_dssp ECHHHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEE
T ss_pred CcHHHHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEE
Confidence 76421 111 123589999999999998899887 7888888888888888 334 333322 6799999
Q ss_pred eeCCcccCcccccccccCccceeeccCCcCCCCCCCCCCCCCCccEEecCCCcCCC--ccCCCcccccccceeecccccc
Q 002278 356 VHGNRLSGAIPSSFRNLGSLTYLNLSRNNFKGKVPTELGRIINLDTLDLSVNNFSG--SVPASIGDLEHLLTLNLSRNHL 433 (943)
Q Consensus 356 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~Ls~N~l 433 (943)
+++|.+.... .+..+++|++|++++|++++..|..+..+++|+.|++++|++++ .+|..+..+++|+.|+|++|++
T Consensus 338 l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l 415 (562)
T 3a79_B 338 ISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSL 415 (562)
T ss_dssp EESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCC
T ss_pred ccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcC
Confidence 9999986332 22688999999999999999899999999999999999999996 3356789999999999999999
Q ss_pred cccCC-ccccCCCccceecccCccccccCChhhhcccccceecccCcccCCCCCCcCccccCCcccccCCccccccCCC-
Q 002278 434 NGLLP-AEFGNLRSIQTIDMSFNQLSGSIPAELGQLQNIISLILNNNNLQGGIPDQLSNCFSLSNLNVSYNNLSGIIPP- 511 (943)
Q Consensus 434 ~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~- 511 (943)
++.+| ..|..+++|+.|+|++|++++.+|..+. ++|+.|+|++|+|+ .+|..+..+++|+.|+|++|+|+++++.
T Consensus 416 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~ 492 (562)
T 3a79_B 416 NSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGV 492 (562)
T ss_dssp BSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTS
T ss_pred CCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHH
Confidence 98444 5689999999999999999987776654 78999999999999 6777777999999999999999988776
Q ss_pred CcccCcCCCCccccCCCCCCCCC
Q 002278 512 IRNFSRFSSNSFIGNPLLCGNWI 534 (943)
Q Consensus 512 ~~~~~~~~~~~~~~Np~~c~~~~ 534 (943)
+..+..+..+.+.+|||.|+|+.
T Consensus 493 ~~~l~~L~~L~l~~N~~~c~c~~ 515 (562)
T 3a79_B 493 FDRLTSLQYIWLHDNPWDCTCPG 515 (562)
T ss_dssp TTTCTTCCCEECCSCCBCCCHHH
T ss_pred HhcCCCCCEEEecCCCcCCCcch
Confidence 67778888889999999998754
No 40
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=100.00 E-value=6.9e-46 Score=414.48 Aligned_cols=264 Identities=25% Similarity=0.320 Sum_probs=210.3
Q ss_pred hccccceEEeeeceEEEEEEEec-CCceEEEEEecccCc--ccHHHHHHHHHHHhcCCCCCcceeeeEEecC------Cc
Q 002278 616 ENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYP--HNLREFETELETIGSIRHRNIVSLHGYALSP------YG 686 (943)
Q Consensus 616 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~------~~ 686 (943)
++|+..+.||+|+||+||+|+++ +++.||||++..... ...+.+.+|+++|+.++|||||++++++... ..
T Consensus 54 ~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~~ 133 (398)
T 4b99_A 54 DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKS 133 (398)
T ss_dssp SSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCCC
T ss_pred CCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCCE
Confidence 57999999999999999999976 689999999965432 3345788999999999999999999997643 56
Q ss_pred ceEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeeccccccc
Q 002278 687 NLLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIAR 766 (943)
Q Consensus 687 ~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~ 766 (943)
.|+|||||. |+|.+++. ....+++.++..++.||+.||+|||++ +||||||||+|||++.++.+||+|||+|+
T Consensus 134 ~~ivmE~~~-g~L~~~i~---~~~~l~~~~~~~~~~qil~al~ylH~~---~iiHRDlKP~NIl~~~~~~~Ki~DFGla~ 206 (398)
T 4b99_A 134 VYVVLDLME-SDLHQIIH---SSQPLTLEHVRYFLYQLLRGLKYMHSA---QVIHRDLKPSNLLVNENCELKIGDFGMAR 206 (398)
T ss_dssp EEEEEECCS-EEHHHHHT---SSSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTCCEEECCCTTCB
T ss_pred EEEEEeCCC-CCHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHC---cCcCCCcCccccccCCCCCEEEeecceee
Confidence 799999995 67999986 456799999999999999999999999 99999999999999999999999999998
Q ss_pred ccCCCC---CceeeeEecccceeCccccccC-CCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhcccccccccc
Q 002278 767 CIPTAM---PHASTFVLGTIGYIDPEYAHTS-RLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAV 842 (943)
Q Consensus 767 ~~~~~~---~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~ 842 (943)
.+.... .......+||+.|||||++.+. .++.++||||+||++|||++|++||.+.+..+.+..+....+......
T Consensus 207 ~~~~~~~~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~~~~~~l~~I~~~~g~p~~~~ 286 (398)
T 4b99_A 207 GLCTSPAEHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGKNYVHQLQLIMMVLGTPSPAV 286 (398)
T ss_dssp CC-------CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCSSHHHHHHHHHHHHCCCCGGG
T ss_pred ecccCccccccccccceeChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCCCCCCCCCHHHHHHHHHHhcCCCChHH
Confidence 764321 1223345799999999998875 569999999999999999999999998887776666544333322221
Q ss_pred Cccccc------------C-ccCH-----HHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhh
Q 002278 843 DPEVSV------------T-CVDL-----SAVRKTFQLALLCTKRYPSERPTMQEVARVLVS 886 (943)
Q Consensus 843 ~~~~~~------------~-~~~~-----~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~ 886 (943)
...... . .... .....+.+++.+||..||++|||+.|+++|-+-
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp~f 348 (398)
T 4b99_A 287 IQAVGAERVRAYIQSLPPRQPVPWETVYPGADRQALSLLGRMLRFEPSARISAAAALRHPFL 348 (398)
T ss_dssp TC-----CHHHHHHSSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSTTTSCCHHHHTTSGGG
T ss_pred hhhhhhhhhhhhhhcCCCcCCCCHHHhCCCCCHHHHHHHHHHCcCChhHCcCHHHHhcCHhh
Confidence 111000 0 0000 012456789999999999999999999998653
No 41
>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*
Probab=100.00 E-value=8.2e-45 Score=401.66 Aligned_cols=261 Identities=20% Similarity=0.254 Sum_probs=201.3
Q ss_pred HhhccccceEEeeeceEEEEEEEec----CCceEEEEEecccCcccHHHHHHHHHHHhcC-CCCCcceeeeEEecCCcce
Q 002278 614 STENLSEKYIVGYGASSTVYKCALK----NSRPIAVKKLYNQYPHNLREFETELETIGSI-RHRNIVSLHGYALSPYGNL 688 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~----~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~ 688 (943)
..++|++.+.||+|+||+||+|+.+ .++.||+|++... ....++.+|+++++.+ +|||||++++++.+.+..+
T Consensus 19 l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~--~~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~~~~~ 96 (361)
T 4f9c_A 19 LSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPT--SHPIRIAAELQCLTVAGGQDNVMGVKYCFRKNDHVV 96 (361)
T ss_dssp GGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTT--SCHHHHHHHHHHHHHTCSBTTBCCCSEEEEETTEEE
T ss_pred ccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEccc--cCHHHHHHHHHHHHHhcCCCCCceEEEEEEECCEEE
Confidence 4578999999999999999999864 3578999998654 3456788999999988 6999999999999999999
Q ss_pred EEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCC-Cceeecccccccc
Q 002278 689 LFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDEN-FDAHLSDFGIARC 767 (943)
Q Consensus 689 lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~-~~~kl~DFGla~~ 767 (943)
+||||+++|+|.+++. .+++.++..++.|++.||+|||++ +|+||||||+|||++.+ +.+||+|||+|+.
T Consensus 97 lvmE~~~g~~L~~~~~------~l~~~~~~~~~~qll~al~ylH~~---gIiHRDiKPeNiLl~~~~~~~kl~DFGla~~ 167 (361)
T 4f9c_A 97 IAMPYLEHESFLDILN------SLSFQEVREYMLNLFKALKRIHQF---GIVHRDVKPSNFLYNRRLKKYALVDFGLAQG 167 (361)
T ss_dssp EEEECCCCCCHHHHHT------TCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEETTTTEEEECCCTTCEE
T ss_pred EEEeCCCcccHHHHHc------CCCHHHHHHHHHHHHHHHHHHHHC---CeEeCcCCHHHeEEeCCCCeEEECcCCCCcc
Confidence 9999999999999984 389999999999999999999999 99999999999999876 7999999999986
Q ss_pred cCCCCC---------------------------ceeeeEecccceeCccccccC-CCCCcchhhhHHHHHHHHHhCCCCC
Q 002278 768 IPTAMP---------------------------HASTFVLGTIGYIDPEYAHTS-RLNEKSDVYSFGIVLLEILTGKKAV 819 (943)
Q Consensus 768 ~~~~~~---------------------------~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwSlGvil~elltG~~p~ 819 (943)
...... ...+..+||+.|+|||++.+. .|+.++||||+||++|||+||+.||
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSlG~il~ell~G~~Pf 247 (361)
T 4f9c_A 168 THDTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSGRYPF 247 (361)
T ss_dssp CTTCSCGGGGGC--------------------------CCCCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTCSSS
T ss_pred cCCccccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCCccchhhhHHHHHHHHHCCCCC
Confidence 543211 112234699999999999875 5899999999999999999999999
Q ss_pred CCC-ccHHHHHHHhcccccc-------------------c--------------cccCcccccCc--------cCHHHHH
Q 002278 820 DNE-SNLHQLIMSKADDNTV-------------------M--------------EAVDPEVSVTC--------VDLSAVR 857 (943)
Q Consensus 820 ~~~-~~~~~~~~~~~~~~~~-------------------~--------------~~~~~~~~~~~--------~~~~~~~ 857 (943)
... ++..++..+....+.. + ....|...... .......
T Consensus 248 ~~~~~~~~~l~~I~~~~G~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~is~ 327 (361)
T 4f9c_A 248 YKASDDLTALAQIMTIRGSRETIQAAKTFGKSILCSKEVPAQDLRKLCERLRGMDSSTPKLTSDIQGHATNLEGWNEVPD 327 (361)
T ss_dssp SCCSSHHHHHHHHHHHHCHHHHHHHHHHTTEEEEESSCCCCCCHHHHHHHHC----------------------CTTCCH
T ss_pred CCCCCHHHHHHHHHHhcCCccchhhhhhccccccccccCcchhhhHHHHhhccccccccccccccccccccccccccCCH
Confidence 644 3333333222110000 0 00000000000 0000123
Q ss_pred HHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 002278 858 KTFQLALLCTKRYPSERPTMQEVARVLV 885 (943)
Q Consensus 858 ~l~~l~~~cl~~dP~~RPt~~el~~~L~ 885 (943)
...+++.+|++.||++|||++|+++|-+
T Consensus 328 ~a~DLl~~lL~~dP~~R~ta~eaL~Hp~ 355 (361)
T 4f9c_A 328 EAYDLLDKLLDLNPASRITAEEALLHPF 355 (361)
T ss_dssp HHHHHHHHHTCSCTTTSCCHHHHHTSGG
T ss_pred HHHHHHHHHCcCChhHCcCHHHHhcCcc
Confidence 5678999999999999999999998854
No 42
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=100.00 E-value=1.6e-44 Score=423.75 Aligned_cols=255 Identities=19% Similarity=0.295 Sum_probs=220.6
Q ss_pred hhccccceEEeeeceEEEEEEEec-CCceEEEEEecccCcccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEEEEE
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYPHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLFYDY 693 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 693 (943)
.++|++.+.||+|+||+||+|.++ +++.||+|++........+.+.+|+++|+.++|||||+++++|.++...++||||
T Consensus 156 l~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv~E~ 235 (573)
T 3uto_A 156 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEF 235 (573)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred ccccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEee
Confidence 368999999999999999999986 5889999999776655667889999999999999999999999999999999999
Q ss_pred ccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCC--CceeecccccccccCCC
Q 002278 694 MVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDEN--FDAHLSDFGIARCIPTA 771 (943)
Q Consensus 694 ~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~--~~~kl~DFGla~~~~~~ 771 (943)
|+||+|.+++.. ....+++.++..++.||+.||+|||++ +|+||||||+|||++.+ +.+||+|||+|+.+...
T Consensus 236 ~~gg~L~~~i~~--~~~~l~e~~~~~~~~qi~~al~ylH~~---~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~~ 310 (573)
T 3uto_A 236 MSGGELFEKVAD--EHNKMSEDEAVEYMRQVCKGLCHMHEN---NYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPK 310 (573)
T ss_dssp CCCCBHHHHHTC--TTSCEEHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSCCCEEECCCSSCEECCTT
T ss_pred cCCCcHHHHHHH--hCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCChhhccccCCCCCCEEEeeccceeEccCC
Confidence 999999999863 345699999999999999999999999 99999999999999854 89999999999987544
Q ss_pred CCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCcccccCcc
Q 002278 772 MPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPEVSVTCV 851 (943)
Q Consensus 772 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 851 (943)
......+||+.|||||++.+..|+.++||||+||++|||++|+.||.+......+..+......+.....+.++
T Consensus 311 --~~~~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s---- 384 (573)
T 3uto_A 311 --QSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGENDDETLRNVKSCDWNMDDSAFSGIS---- 384 (573)
T ss_dssp --SEEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHTTCCCCCSGGGTTSC----
T ss_pred --CceeeeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHhCCCCCCcccccCCC----
Confidence 23345679999999999999999999999999999999999999999887766665555544444333333333
Q ss_pred CHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 002278 852 DLSAVRKTFQLALLCTKRYPSERPTMQEVARVLV 885 (943)
Q Consensus 852 ~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~ 885 (943)
..+.+++.+||+.||++|||+.|+++|-|
T Consensus 385 -----~~~~dli~~~L~~dp~~R~t~~e~l~Hpw 413 (573)
T 3uto_A 385 -----EDGKDFIRKLLLADPNTRMTIHQALEHPW 413 (573)
T ss_dssp -----HHHHHHHHTTSCSSGGGSCCHHHHHHSTT
T ss_pred -----HHHHHHHHHHccCChhHCcCHHHHhcCcC
Confidence 35678999999999999999999999865
No 43
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=4.2e-43 Score=406.05 Aligned_cols=389 Identities=20% Similarity=0.236 Sum_probs=277.8
Q ss_pred CCCCCCcce--eEecCCCCcEEEEEcCCCCCccccCCCcCCCCCCCEEEeeCCcccccCCCCccCCCCCcEEeccCCCcC
Q 002278 22 NSDFCSWRG--VFCDNSSLSVVSLNLSSLNLGGEISPSIGDLRNLQSIDFQGNKLTGQIPDEIGNCGSLVHIELSDNSLY 99 (943)
Q Consensus 22 ~~~~c~w~g--v~c~~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 99 (943)
..+.|.|.+ |.|++. +++ .+|. + .++|++|||++|+|++..|..|+++++|++|+|++|.+.
T Consensus 4 ~~~~c~~~~~~~~c~~~------------~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~ 67 (455)
T 3v47_A 4 GTSECSVIGYNAICINR------------GLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPG 67 (455)
T ss_dssp ---CCEEETTEEECCSS------------CCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTT
T ss_pred ccceeEEEccccCcCCC------------Ccc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCccc
Confidence 346677766 666654 344 4555 3 278999999999999888999999999999999999997
Q ss_pred Ccc-chhccccccceEEEecCcccccCCCcccCCCCCCcEEEEeccccccccchh--ccccccceeccccCCccCCCCCc
Q 002278 100 GDI-PFSISKLKQLEFLNLKNNQLTGPIPSTLTQIPNLKTLDLARNQLTGEIPRL--IYWNEVLQYLGLRGNALTGMLSP 176 (943)
Q Consensus 100 ~~~-p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~ 176 (943)
+.+ |..|+++++|++|+|++|++++..|..|.++++|++|+|++|++++..+.. |..+++|++|+|++|+++++.+.
T Consensus 68 ~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 147 (455)
T 3v47_A 68 LVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA 147 (455)
T ss_dssp CEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCC
T ss_pred ceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcc
Confidence 555 567999999999999999999888999999999999999999998755554 88899999999999999988776
Q ss_pred c-cccccccceeeccceecccccCCCCcCC--CcccEEEeecccccCcCCCCC---------CcceEeEEEecCcccccc
Q 002278 177 D-MCQLTGLWYFDVRGNNLTGTIPDSIGNC--TSFEILDISYNQITGEIPYNI---------GFLQVATLSLQGNKLTGK 244 (943)
Q Consensus 177 ~-~~~l~~L~~L~L~~N~i~~~~~~~l~~l--~~L~~L~Ls~N~l~~~~~~~~---------~~~~L~~L~L~~n~l~~~ 244 (943)
. +..+++|++|++++|++++..+..+..+ .+|+.|++++|.+.+..+..+ ...+|+.|++++|.+++.
T Consensus 148 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~ 227 (455)
T 3v47_A 148 SFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKES 227 (455)
T ss_dssp GGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHH
T ss_pred cccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCccccc
Confidence 6 8889999999999999998888888776 688999999998886544332 234677777777777666
Q ss_pred CCcccccc---CCCcEEecCCCCCCCCCCcccCCCCCcceEEecCCCCCCCCCCCcCCCCcCcEEEcccCcccccccccc
Q 002278 245 IPEVIGLM---QALAVLDLSENELVGPIPPILGNLSYTGKLYLHGNKLTGPIPPELGNMSKLSYLQLQNNQLVGTIPAEL 321 (943)
Q Consensus 245 ~~~~l~~l---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 321 (943)
.|..+... .+|+.|++++|.+.+.. +..+.+....+..+..+
T Consensus 228 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~--------------~~~~~~~~~~~~~~~~~--------------------- 272 (455)
T 3v47_A 228 MAKRFFDAIAGTKIQSLILSNSYNMGSS--------------FGHTNFKDPDNFTFKGL--------------------- 272 (455)
T ss_dssp HHHHHHHHTTTCCEEEEECTTCTTTSCC--------------TTCCSSCCCCTTTTGGG---------------------
T ss_pred chhhhhccccccceeeEeeccccccccc--------------cchhhhccCcccccccc---------------------
Confidence 66655443 56666666666544321 11112222222222222
Q ss_pred CCcccceEEEccccccCCcCcccccCCCcCcEEEeeCCcccCcccccccccCccceeeccCCcCCCCCCCCCCCCCCccE
Q 002278 322 GKLEQLFELNLADNNLEGPIPHNISSCTALNQFNVHGNRLSGAIPSSFRNLGSLTYLNLSRNNFKGKVPTELGRIINLDT 401 (943)
Q Consensus 322 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 401 (943)
..++|+.|++++|++.+..|..|..+++|++|++++|++++..|..|.++++|++|+|++|++++..|..+..+++|+.
T Consensus 273 -~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 351 (455)
T 3v47_A 273 -EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEV 351 (455)
T ss_dssp -TTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCE
T ss_pred -cccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCE
Confidence 1134555555555555555555555555555555555555555556666666666666666666555666666777777
Q ss_pred EecCCCcCCCccCCCcccccccceeecccccccccCCccccCCCccceecccCccccccCC
Q 002278 402 LDLSVNNFSGSVPASIGDLEHLLTLNLSRNHLNGLLPAEFGNLRSIQTIDMSFNQLSGSIP 462 (943)
Q Consensus 402 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 462 (943)
|+|++|++++..|..|..+++|++|+|++|++++..+..|..+++|+.|+|++|++++..|
T Consensus 352 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 352 LDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred EECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 7777777776667777777788888888888877666677888888888888888887666
No 44
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=100.00 E-value=8.2e-44 Score=412.81 Aligned_cols=249 Identities=22% Similarity=0.257 Sum_probs=202.9
Q ss_pred hhccccceEEeeeceEEEEEEEec-CCceEEEEEecccC---cccHHHH---HHHHHHHhcCCCCCcceeeeEEecCCcc
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQY---PHNLREF---ETELETIGSIRHRNIVSLHGYALSPYGN 687 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~---~~E~~~l~~l~h~niv~l~~~~~~~~~~ 687 (943)
.++|+..++||+|+||+||+|+.+ +++.||+|++.+.. ......+ ..++++++.++|||||+++++|.+.+..
T Consensus 188 lddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~l 267 (689)
T 3v5w_A 188 MNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKL 267 (689)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEE
T ss_pred hHHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCEE
Confidence 467999999999999999999987 58899999986432 1222333 3446777888999999999999999999
Q ss_pred eEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccc
Q 002278 688 LLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARC 767 (943)
Q Consensus 688 ~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~ 767 (943)
|+||||++||+|.+++. ..+.+++..+..++.||+.||+|||++ +||||||||+|||++.+|++||+|||+|+.
T Consensus 268 ylVmEy~~GGdL~~~l~---~~~~l~E~~a~~y~~qIl~aL~yLH~~---gIiHRDLKPeNILld~~G~vKL~DFGlA~~ 341 (689)
T 3v5w_A 268 SFILDLMNGGDLHYHLS---QHGVFSEADMRFYAAEIILGLEHMHNR---FVVYRDLKPANILLDEHGHVRISDLGLACD 341 (689)
T ss_dssp EEEECCCCSCBHHHHHH---HHCCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECTTSCEEECCCTTCEE
T ss_pred EEEEecCCCCcHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCchHHeEEeCCCCEEecccceeee
Confidence 99999999999999997 456799999999999999999999999 999999999999999999999999999998
Q ss_pred cCCCCCceeeeEecccceeCcccccc-CCCCCcchhhhHHHHHHHHHhCCCCCCCCc--cHHHHHHH-hccccccccccC
Q 002278 768 IPTAMPHASTFVLGTIGYIDPEYAHT-SRLNEKSDVYSFGIVLLEILTGKKAVDNES--NLHQLIMS-KADDNTVMEAVD 843 (943)
Q Consensus 768 ~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGvil~elltG~~p~~~~~--~~~~~~~~-~~~~~~~~~~~~ 843 (943)
+..... ...+||+.|||||++.+ ..|+.++||||+||++|||++|++||.+.. ........ ......++
T Consensus 342 ~~~~~~---~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~~~~~i~~~i~~~~~~~p---- 414 (689)
T 3v5w_A 342 FSKKKP---HASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKDKHEIDRMTLTMAVELP---- 414 (689)
T ss_dssp CSSCCC---CSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCCCHHHHHHHHHHCCCCCC----
T ss_pred cCCCCC---CCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHhhcCCCCCCC----
Confidence 754432 23579999999999964 579999999999999999999999997533 22222221 11111111
Q ss_pred cccccCccCHHHHHHHHHHHHHccCCCCCCCCC-----HHHHHHHHh
Q 002278 844 PEVSVTCVDLSAVRKTFQLALLCTKRYPSERPT-----MQEVARVLV 885 (943)
Q Consensus 844 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt-----~~el~~~L~ 885 (943)
+.++ ..+.+++..|++.||++|++ +.|+.+|-+
T Consensus 415 ~~~S---------~~a~dLI~~lL~~dP~~Rl~~~~~ga~ei~~Hpf 452 (689)
T 3v5w_A 415 DSFS---------PELRSLLEGLLQRDVNRRLGCLGRGAQEVKESPF 452 (689)
T ss_dssp TTSC---------HHHHHHHHHHTCSCGGGCTTCSSSTHHHHTTSGG
T ss_pred ccCC---------HHHHHHHHHHccCCHhHCCCCCCCCHHHHhcCcc
Confidence 1121 35678999999999999998 799988764
No 45
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=6.2e-43 Score=401.30 Aligned_cols=415 Identities=24% Similarity=0.299 Sum_probs=246.9
Q ss_pred cEEEEEcCCCCCccccCCCcCCCCCCCEEEeeCCcccccCCCCccCCCCCcEEeccCCCcCCccchhccccccceEEEec
Q 002278 39 SVVSLNLSSLNLGGEISPSIGDLRNLQSIDFQGNKLTGQIPDEIGNCGSLVHIELSDNSLYGDIPFSISKLKQLEFLNLK 118 (943)
Q Consensus 39 ~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 118 (943)
+++.|++++|++ |.+|++++++++|++|++++|+++|.+|..++++.+|+.+++++|. ..+|++|+++
T Consensus 12 ~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~-----------~~~l~~L~l~ 79 (454)
T 1jl5_A 12 FLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL-----------DRQAHELELN 79 (454)
T ss_dssp -----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHH-----------HHTCSEEECT
T ss_pred cchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhh-----------ccCCCEEEec
Confidence 344455555555 3455555555555555555555555555555554444333322221 0234778888
Q ss_pred CcccccCCCcccCCCCCCcEEEEeccccccccchhccccccceeccccCCccCCCCCcccccccccceeeccceeccccc
Q 002278 119 NNQLTGPIPSTLTQIPNLKTLDLARNQLTGEIPRLIYWNEVLQYLGLRGNALTGMLSPDMCQLTGLWYFDVRGNNLTGTI 198 (943)
Q Consensus 119 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~ 198 (943)
+|.+++ +|.. .++|++|++++|++++ +|.. ..+|++|++++|+++++... .++|++|++++|++++ +
T Consensus 80 ~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~~----~~~L~~L~L~~n~l~~-l 146 (454)
T 1jl5_A 80 NLGLSS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALSDL----PPLLEYLGVSNNQLEK-L 146 (454)
T ss_dssp TSCCSC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCCSC----CTTCCEEECCSSCCSS-C
T ss_pred CCcccc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcccCC----CCCCCEEECcCCCCCC-C
Confidence 887774 3432 3677888888888775 4543 36788888888888765421 2678888888888885 5
Q ss_pred CCCCcCCCcccEEEeecccccCcCCCCCCcceEeEEEecCccccccCCccccccCCCcEEecCCCCCCCCCCcccCCCCC
Q 002278 199 PDSIGNCTSFEILDISYNQITGEIPYNIGFLQVATLSLQGNKLTGKIPEVIGLMQALAVLDLSENELVGPIPPILGNLSY 278 (943)
Q Consensus 199 ~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 278 (943)
| .|+++++|++|++++|++++ +|... .+|++|++++|++++ +| .++.+++|+.|++++|.+++ +|... ++
T Consensus 147 p-~~~~l~~L~~L~l~~N~l~~-lp~~~--~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~ 216 (454)
T 1jl5_A 147 P-ELQNSSFLKIIDVDNNSLKK-LPDLP--PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP---LS 216 (454)
T ss_dssp C-CCTTCTTCCEEECCSSCCSC-CCCCC--TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC---TT
T ss_pred c-ccCCCCCCCEEECCCCcCcc-cCCCc--ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc---Cc
Confidence 6 58888888888888888875 55433 378888888888886 45 57888899999999998885 44332 57
Q ss_pred cceEEecCCCCCCCCCCCcCCCCcCcEEEcccCccccccccccCCcccceEEEccccccCCcCcccccCCCcCcEEEeeC
Q 002278 279 TGKLYLHGNKLTGPIPPELGNMSKLSYLQLQNNQLVGTIPAELGKLEQLFELNLADNNLEGPIPHNISSCTALNQFNVHG 358 (943)
Q Consensus 279 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 358 (943)
|++|++++|.++ .+| .+..+++|++|++++|++++ +|.. +++|+.|++++|++++ +|.. .++|+.|++++
T Consensus 217 L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~ 286 (454)
T 1jl5_A 217 LESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSE 286 (454)
T ss_dssp CCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCS
T ss_pred ccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcC
Confidence 888999999888 556 48888999999999998884 4432 3788899999999886 4443 37888999999
Q ss_pred CcccCcccccccccCccceeeccCCcCCCCCCCCCCCCCCccEEecCCCcCCCccCCCcccccccceeecccccccccCC
Q 002278 359 NRLSGAIPSSFRNLGSLTYLNLSRNNFKGKVPTELGRIINLDTLDLSVNNFSGSVPASIGDLEHLLTLNLSRNHLNGLLP 438 (943)
Q Consensus 359 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 438 (943)
|++++. |.. .++|+.|++++|++++. +.. ..+|+.|++++|++++ +|.. +++|+.|++++|++++ +|
T Consensus 287 N~l~~l-~~~---~~~L~~L~l~~N~l~~i-~~~---~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp 353 (454)
T 1jl5_A 287 NIFSGL-SEL---PPNLYYLNASSNEIRSL-CDL---PPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VP 353 (454)
T ss_dssp SCCSEE-SCC---CTTCCEEECCSSCCSEE-CCC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CC
T ss_pred CccCcc-cCc---CCcCCEEECcCCcCCcc-cCC---cCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-cc
Confidence 988853 211 26788999999988752 221 2478899999999885 5554 5788899999999884 55
Q ss_pred ccccCCCccceecccCccccc--cCChhhhcccccceecccCcccCCCCCCcCccccCCcccccCCccccc--cCCCCcc
Q 002278 439 AEFGNLRSIQTIDMSFNQLSG--SIPAELGQLQNIISLILNNNNLQGGIPDQLSNCFSLSNLNVSYNNLSG--IIPPIRN 514 (943)
Q Consensus 439 ~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~--~~~~~~~ 514 (943)
. .+++|++|++++|++++ .+|..+..+ +.|++.+.+|.. +++|+.||+++|++++ .+|.
T Consensus 354 ~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L--------~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~--- 416 (454)
T 1jl5_A 354 E---LPQNLKQLHVEYNPLREFPDIPESVEDL--------RMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPE--- 416 (454)
T ss_dssp C---CCTTCCEEECCSSCCSSCCCCCTTCCEE--------ECCC------------------------------------
T ss_pred c---hhhhccEEECCCCCCCcCCCChHHHHhh--------hhcccccccccc---cCcCCEEECCCCcCCccccchh---
Confidence 5 46889999999999987 677766543 346666677753 4788899999999987 4442
Q ss_pred cCcCCCCccccCCCCC
Q 002278 515 FSRFSSNSFIGNPLLC 530 (943)
Q Consensus 515 ~~~~~~~~~~~Np~~c 530 (943)
.+..+.+.+|...|
T Consensus 417 --sl~~L~~~~~~~~~ 430 (454)
T 1jl5_A 417 --SVEDLRMNSERVVD 430 (454)
T ss_dssp ----------------
T ss_pred --hHhheeCcCcccCC
Confidence 23344455655444
No 46
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.3e-42 Score=401.84 Aligned_cols=385 Identities=22% Similarity=0.209 Sum_probs=272.9
Q ss_pred CEEEeeCCcccccCCCCccCCCCCcEEeccCCCcCCccchhccccccceEEEecCcccccC-CCcccCCCCCCcEEEEec
Q 002278 65 QSIDFQGNKLTGQIPDEIGNCGSLVHIELSDNSLYGDIPFSISKLKQLEFLNLKNNQLTGP-IPSTLTQIPNLKTLDLAR 143 (943)
Q Consensus 65 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~ 143 (943)
+.++.++++++ .+|. + .++|++|+|++|++++..|..|+++++|++|+|++|.+.+. .+..|.++++|++|+|++
T Consensus 13 ~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 13 YNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred cccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 46777888887 6665 3 36788888888888866677788888888888888877633 356677788888888888
Q ss_pred cccccccchhccccccceeccccCCccCCCCCc--ccccccccceeeccceecccccCCC-CcCCCcccEEEeecccccC
Q 002278 144 NQLTGEIPRLIYWNEVLQYLGLRGNALTGMLSP--DMCQLTGLWYFDVRGNNLTGTIPDS-IGNCTSFEILDISYNQITG 220 (943)
Q Consensus 144 N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~N~i~~~~~~~-l~~l~~L~~L~Ls~N~l~~ 220 (943)
|++++..|..|..+++|++|+|++|++++..+. .+..+++|++|+|++|++++..|.. +.+++
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~-------------- 154 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMR-------------- 154 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCT--------------
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCC--------------
Confidence 777766666666666666666666665542221 1444444444444444444333332 34444
Q ss_pred cCCCCCCcceEeEEEecCccccccCCccccccCCCcEEecCCCCCCCCCCcccCCC--CCcceEEecCCCCCCCCCCC--
Q 002278 221 EIPYNIGFLQVATLSLQGNKLTGKIPEVIGLMQALAVLDLSENELVGPIPPILGNL--SYTGKLYLHGNKLTGPIPPE-- 296 (943)
Q Consensus 221 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~-- 296 (943)
+|++|++++|.+.+..+..+..+ .+|+.|++++|.+.+..+..
T Consensus 155 ---------------------------------~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~ 201 (455)
T 3v47_A 155 ---------------------------------RFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLG 201 (455)
T ss_dssp ---------------------------------TCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTT
T ss_pred ---------------------------------cccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcc
Confidence 44444444444444444433333 34444444444444333222
Q ss_pred ------cCCCCcCcEEEcccCccccccccccCCc---ccceEEEccccccCCcCcccccCCCcCcEEEeeCCcccCcccc
Q 002278 297 ------LGNMSKLSYLQLQNNQLVGTIPAELGKL---EQLFELNLADNNLEGPIPHNISSCTALNQFNVHGNRLSGAIPS 367 (943)
Q Consensus 297 ------~~~l~~L~~L~L~~N~l~~~~~~~~~~l---~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~ 367 (943)
+..+++|++|++++|++++..|..+... ++|+.|++++|.+.+... ..+.+....+.
T Consensus 202 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~~~ 267 (455)
T 3v47_A 202 WEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF--------------GHTNFKDPDNF 267 (455)
T ss_dssp HHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT--------------TCCSSCCCCTT
T ss_pred ccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccccc--------------chhhhccCccc
Confidence 3356778888888888887777766554 778888888887654311 12233333333
Q ss_pred ccccc--CccceeeccCCcCCCCCCCCCCCCCCccEEecCCCcCCCccCCCcccccccceeecccccccccCCccccCCC
Q 002278 368 SFRNL--GSLTYLNLSRNNFKGKVPTELGRIINLDTLDLSVNNFSGSVPASIGDLEHLLTLNLSRNHLNGLLPAEFGNLR 445 (943)
Q Consensus 368 ~~~~l--~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 445 (943)
.|..+ ++|+.|++++|++++..|..+..+++|+.|+|++|++++..|..|.++++|++|+|++|++++..|..|.+++
T Consensus 268 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 347 (455)
T 3v47_A 268 TFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLD 347 (455)
T ss_dssp TTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCT
T ss_pred ccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcc
Confidence 44443 6899999999999988888999999999999999999988888999999999999999999988889999999
Q ss_pred ccceecccCccccccCChhhhcccccceecccCcccCCCCCCcCccccCCcccccCCccccccCCCCcc
Q 002278 446 SIQTIDMSFNQLSGSIPAELGQLQNIISLILNNNNLQGGIPDQLSNCFSLSNLNVSYNNLSGIIPPIRN 514 (943)
Q Consensus 446 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~ 514 (943)
+|++|+|++|++++..|..|..+++|++|+|++|+|++..+..+..+++|+.|++++|++++.+|....
T Consensus 348 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 416 (455)
T 3v47_A 348 KLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 416 (455)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHH
T ss_pred cCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcchH
Confidence 999999999999988899999999999999999999987777788999999999999999998886543
No 47
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*
Probab=100.00 E-value=1.9e-42 Score=381.79 Aligned_cols=283 Identities=39% Similarity=0.666 Sum_probs=234.5
Q ss_pred cccCHHHHHHHhhccccceEEeeeceEEEEEEEecCCceEEEEEecccCc-ccHHHHHHHHHHHhcCCCCCcceeeeEEe
Q 002278 604 AIHTFDDIMRSTENLSEKYIVGYGASSTVYKCALKNSRPIAVKKLYNQYP-HNLREFETELETIGSIRHRNIVSLHGYAL 682 (943)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~ 682 (943)
..++++++....++|+..+.||+|+||.||+|..++++.||||++..... .....+.+|+++++.++||||+++++++.
T Consensus 18 ~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~ 97 (326)
T 3uim_A 18 KRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCM 97 (326)
T ss_dssp EECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCCEEEC
T ss_pred ceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceEEEEe
Confidence 45788999999999999999999999999999988899999999865432 22346899999999999999999999999
Q ss_pred cCCcceEEEEEccCCChhhhccCCC-CCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecc
Q 002278 683 SPYGNLLFYDYMVNGSLWDLLHGPS-KKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSD 761 (943)
Q Consensus 683 ~~~~~~lv~e~~~~g~L~~~l~~~~-~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~D 761 (943)
.+...++||||+++|+|.+++.... ....+++..+..++.|++.||+|||+.+.++|+||||||+||+++.++.+||+|
T Consensus 98 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~~~~~kl~D 177 (326)
T 3uim_A 98 TPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGD 177 (326)
T ss_dssp CSSCCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEECTTCCEEECC
T ss_pred cCCceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEECCCCCEEecc
Confidence 9999999999999999999997543 234599999999999999999999998777999999999999999999999999
Q ss_pred cccccccCCCCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCC-------CccHHHHHHHhcc
Q 002278 762 FGIARCIPTAMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDN-------ESNLHQLIMSKAD 834 (943)
Q Consensus 762 FGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~-------~~~~~~~~~~~~~ 834 (943)
||+++..............||+.|+|||++.+..++.++||||+||++|||+||+.||+. ......+......
T Consensus 178 fg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~ 257 (326)
T 3uim_A 178 FGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLK 257 (326)
T ss_dssp CSSCEECCSSSSCEECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTTSCSBHHHHHTTTTS
T ss_pred CccccccCcccccccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCCcccccccccccchhHHHHHHHHhh
Confidence 999998765555555556699999999999988999999999999999999999999961 1223333333333
Q ss_pred ccccccccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhc
Q 002278 835 DNTVMEAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSL 887 (943)
Q Consensus 835 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~ 887 (943)
........++..... ........+.+++..||+.||++|||+.+++++|+..
T Consensus 258 ~~~~~~~~~~~~~~~-~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~~ 309 (326)
T 3uim_A 258 EKKLEALVDVDLQGN-YKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGD 309 (326)
T ss_dssp SCCSTTSSCTTCTTS-CCHHHHHHHHHHHHHHTCSCGGGSCCHHHHHHHHHTS
T ss_pred chhhhhhcChhhccc-cCHHHHHHHHHHHHHHhCcCCccCCCHHHHHHHhcCc
Confidence 333333333333322 2446678899999999999999999999999999864
No 48
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*
Probab=100.00 E-value=4.4e-42 Score=377.87 Aligned_cols=278 Identities=39% Similarity=0.635 Sum_probs=228.9
Q ss_pred HHHHHHHhhccccceEEeeeceEEEEEEEecCCceEEEEEecccCcccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcc
Q 002278 608 FDDIMRSTENLSEKYIVGYGASSTVYKCALKNSRPIAVKKLYNQYPHNLREFETELETIGSIRHRNIVSLHGYALSPYGN 687 (943)
Q Consensus 608 ~~~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 687 (943)
+.++...+++|+..+.||+|+||+||+|.+++++.||+|++........+.+.+|+++++.++||||+++++++.+.+..
T Consensus 31 ~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 110 (321)
T 2qkw_B 31 LVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERNEM 110 (321)
T ss_dssp CSCCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEECCCTTCC
T ss_pred HHHHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCeE
Confidence 33445577899999999999999999999888999999998777666778899999999999999999999999999999
Q ss_pred eEEEEEccCCChhhhccCCCC-CccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeeccccccc
Q 002278 688 LLFYDYMVNGSLWDLLHGPSK-KVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIAR 766 (943)
Q Consensus 688 ~lv~e~~~~g~L~~~l~~~~~-~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~ 766 (943)
++||||+++|+|.+++..... ...+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++
T Consensus 111 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~ 187 (321)
T 2qkw_B 111 ILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTR---AIIHRDVKSINILLDENFVPKITDFGISK 187 (321)
T ss_dssp EEEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCSTTEEECTTCCEEECCCTTCE
T ss_pred EEEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhcCC---CeecCCCCHHHEEECCCCCEEEeeccccc
Confidence 999999999999999974322 23689999999999999999999999 99999999999999999999999999998
Q ss_pred ccCCCC-CceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCcc-----HHHHHHHhcccccccc
Q 002278 767 CIPTAM-PHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESN-----LHQLIMSKADDNTVME 840 (943)
Q Consensus 767 ~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~-----~~~~~~~~~~~~~~~~ 840 (943)
...... ........||+.|+|||++.+..++.++|||||||++|||+||+.||..... ...+............
T Consensus 188 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (321)
T 2qkw_B 188 KGTELDQTHLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNNGQLEQ 267 (321)
T ss_dssp ECSSSSCCCCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCHHHHTHHHHTTTCCCS
T ss_pred ccccccccccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCcHHHHHHHHHhhhccccccHHH
Confidence 654322 2223344589999999999999999999999999999999999999975332 2222222222333333
Q ss_pred ccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCC
Q 002278 841 AVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLP 889 (943)
Q Consensus 841 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~ 889 (943)
.+++..... ........+.+++..||+.||++|||+.|++++|+.+..
T Consensus 268 ~~~~~~~~~-~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~l~ 315 (321)
T 2qkw_B 268 IVDPNLADK-IRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALR 315 (321)
T ss_dssp SSSSSCTTC-SCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred hcChhhccc-cCHHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhh
Confidence 344433322 234667789999999999999999999999999987653
No 49
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Probab=100.00 E-value=1.1e-41 Score=369.90 Aligned_cols=255 Identities=22% Similarity=0.324 Sum_probs=215.5
Q ss_pred HhhccccceEEeeeceEEEEEEEec-CCceEEEEEecccCcccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEEEE
Q 002278 614 STENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYPHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLFYD 692 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 692 (943)
..++|+..+.||+|+||+||+|.+. +++.||+|++........+.+.+|+.+++.++||||+++++++...+..++|||
T Consensus 18 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e 97 (297)
T 3fxz_A 18 PKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVME 97 (297)
T ss_dssp GGGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred hhhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEEEE
Confidence 3568999999999999999999964 688999999976666667889999999999999999999999999999999999
Q ss_pred EccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccCCCC
Q 002278 693 YMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIPTAM 772 (943)
Q Consensus 693 ~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~~~~ 772 (943)
|+++|+|.+++. ...+++.++..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++......
T Consensus 98 ~~~~~~L~~~~~----~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~ 170 (297)
T 3fxz_A 98 YLAGGSLTDVVT----ETCMDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQ 170 (297)
T ss_dssp CCTTCBHHHHHH----HSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECCSTT
T ss_pred CCCCCCHHHHHh----hcCCCHHHHHHHHHHHHHHHHHHHhC---CceeCCCCHHHEEECCCCCEEEeeCCCceecCCcc
Confidence 999999999986 23589999999999999999999999 99999999999999999999999999998775443
Q ss_pred CceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCcccccCccC
Q 002278 773 PHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPEVSVTCVD 852 (943)
Q Consensus 773 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 852 (943)
.. .....||+.|+|||++.+..++.++||||+||++|||+||+.||.+................... ..+.+
T Consensus 171 ~~-~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~-~~~~~------ 242 (297)
T 3fxz_A 171 SK-RSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLRALYLIATNGTPELQ-NPEKL------ 242 (297)
T ss_dssp CC-BCCCCSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHHCSCCCS-CGGGS------
T ss_pred cc-cCCccCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCC-Ccccc------
Confidence 32 23356999999999999999999999999999999999999999877665544433322211110 11111
Q ss_pred HHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhh
Q 002278 853 LSAVRKTFQLALLCTKRYPSERPTMQEVARVLVS 886 (943)
Q Consensus 853 ~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~ 886 (943)
...+.+++..||+.||++|||+.|+++|-+-
T Consensus 243 ---~~~~~~li~~~l~~dp~~Rps~~ell~h~~~ 273 (297)
T 3fxz_A 243 ---SAIFRDFLNRCLEMDVEKRGSAKELLQHQFL 273 (297)
T ss_dssp ---CHHHHHHHHHHSCSSTTTSCCHHHHTTCGGG
T ss_pred ---CHHHHHHHHHHccCChhHCcCHHHHhhChhh
Confidence 2457789999999999999999999987653
No 50
>3zgw_A Maternal embryonic leucine zipper kinase; transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=100.00 E-value=5.4e-42 Score=378.77 Aligned_cols=256 Identities=20% Similarity=0.278 Sum_probs=206.1
Q ss_pred HhhccccceEEeeeceEEEEEEEec-CCceEEEEEecccC-cccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEEE
Q 002278 614 STENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQY-PHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLFY 691 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 691 (943)
..++|+..+.||+|+||+||+|.+. +++.||||++.... ......+.+|+++++.++||||+++++++.+.+..++||
T Consensus 8 l~~~y~i~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~Ei~~l~~l~hpnIv~l~~~~~~~~~~~lv~ 87 (347)
T 3zgw_A 8 LLKYYELHETIGTGGFAKVKLACHILTGEMVAIKIMDKNTLGSDLPRIKTEIEALKNLRHQHICQLYHVLETANKIFMVL 87 (347)
T ss_dssp TTTTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESSCC---CCHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HhcCeEEEEEEEcCCCeEEEEEEECCCCCEEEEEEEEccccchHHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEEE
Confidence 3578999999999999999999975 68899999986543 233457889999999999999999999999999999999
Q ss_pred EEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccCCC
Q 002278 692 DYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIPTA 771 (943)
Q Consensus 692 e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~~~ 771 (943)
||+++|+|.+++. ....+++..+..++.|++.||+|||+. +|+||||||+||++++++.+||+|||++......
T Consensus 88 E~~~gg~L~~~l~---~~~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~~~~kL~DFG~a~~~~~~ 161 (347)
T 3zgw_A 88 EYCPGGELFDYII---SQDRLSEEETRVVFRQIVSAVAYVHSQ---GYAHRDLKPENLLFDEYHKLKLIDFGLCAKPKGN 161 (347)
T ss_dssp ECCTTCBHHHHHH---HHSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBC----
T ss_pred eCCCCCCHHHHHH---HcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCccHHHEEEcCCCCEEEEeccCcccccCC
Confidence 9999999999986 345699999999999999999999999 9999999999999999999999999999876544
Q ss_pred CCceeeeEecccceeCccccccCCC-CCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCcccccCc
Q 002278 772 MPHASTFVLGTIGYIDPEYAHTSRL-NEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPEVSVTC 850 (943)
Q Consensus 772 ~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 850 (943)
.........||+.|+|||++.+..+ +.++||||+||++|||++|+.||.+.................+..+
T Consensus 162 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~~~~~~~~~~i~~~~~~~p~~~-------- 233 (347)
T 3zgw_A 162 KDYHLQTCCGSLAYAAPELIQGKSYLGSEADVWSMGILLYVLMCGFLPFDDDNVMALYKKIMRGKYDVPKWL-------- 233 (347)
T ss_dssp ----------CGGGCCHHHHTTC---CCHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTC--------
T ss_pred CCccccccCCccCccCHHHHcCCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcCCCCCCCCC--------
Confidence 3333445679999999999998775 8999999999999999999999988765554444433332222211
Q ss_pred cCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcC
Q 002278 851 VDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLL 888 (943)
Q Consensus 851 ~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~ 888 (943)
...+.+++..||+.||++|||+.|++++-+-..
T Consensus 234 -----s~~~~~li~~~L~~dP~~Rps~~eil~hp~~~~ 266 (347)
T 3zgw_A 234 -----SPSSILLLQQMLQVDPKKRISMKNLLNHPWIMQ 266 (347)
T ss_dssp -----CHHHHHHHHHHTCSSGGGSCCHHHHHTCHHHHT
T ss_pred -----CHHHHHHHHHHcccCHhHCcCHHHHhcCcchhc
Confidence 135668999999999999999999999876443
No 51
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*
Probab=100.00 E-value=3.7e-42 Score=375.55 Aligned_cols=265 Identities=28% Similarity=0.433 Sum_probs=208.4
Q ss_pred HHHhhccccceEEeeeceEEEEEEEecCCceEEEEEecccC--cccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceE
Q 002278 612 MRSTENLSEKYIVGYGASSTVYKCALKNSRPIAVKKLYNQY--PHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLL 689 (943)
Q Consensus 612 ~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 689 (943)
....++|+..+.||+|+||+||+|++. ++.||||++.... ....+.+.+|++++++++||||+++++++.+....++
T Consensus 33 ~i~~~~y~i~~~lG~G~~g~V~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~l 111 (309)
T 3p86_A 33 DIPWCDLNIKEKIGAGSFGTVHRAEWH-GSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPNLSI 111 (309)
T ss_dssp BCCGGGEEEEEEEEECSSEEEEEEEET-TEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTCCEE
T ss_pred cCChhHceeeeEeecCCCeEEEEEEEC-CCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCceEE
Confidence 345678999999999999999999874 7889999986553 2334578899999999999999999999999999999
Q ss_pred EEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCC--eEecCCCCccEEECCCCceeecccccccc
Q 002278 690 FYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPR--IIHRDVKSSNILIDENFDAHLSDFGIARC 767 (943)
Q Consensus 690 v~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~Dlkp~Nill~~~~~~kl~DFGla~~ 767 (943)
||||+++|+|.+++........+++..++.++.|++.||+|||+. + |+||||||+||+++.++.+||+|||+++.
T Consensus 112 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~ 188 (309)
T 3p86_A 112 VTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNR---NPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRL 188 (309)
T ss_dssp EEECCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHHTS---SSCCCCTTCCGGGEEECTTCCEEECCCC----
T ss_pred EEecCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHcC---CCCEECCCCChhhEEEeCCCcEEECCCCCCcc
Confidence 999999999999997543334599999999999999999999998 8 99999999999999999999999999986
Q ss_pred cCCCCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCcccc
Q 002278 768 IPTAMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPEVS 847 (943)
Q Consensus 768 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 847 (943)
...... ......||+.|+|||++.+..++.++|||||||++|||+||+.||.................. ....+.+
T Consensus 189 ~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~~~~~~~~~~~~~~~~--~~~~~~~- 264 (309)
T 3p86_A 189 KASTFL-SSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPAQVVAAVGFKCKR--LEIPRNL- 264 (309)
T ss_dssp --------------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTSCHHHHHHHHHHSCCC--CCCCTTS-
T ss_pred cccccc-ccccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCC--CCCCccC-
Confidence 543322 223456999999999999999999999999999999999999999876654433332211111 0111111
Q ss_pred cCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCCCCC
Q 002278 848 VTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLPAPP 892 (943)
Q Consensus 848 ~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~~~~ 892 (943)
...+.+++..||+.||++|||+.++++.|+.+.....
T Consensus 265 --------~~~l~~li~~~l~~dP~~Rps~~~ll~~L~~~~~~~~ 301 (309)
T 3p86_A 265 --------NPQVAAIIEGCWTNEPWKRPSFATIMDLLRPLIKSAV 301 (309)
T ss_dssp --------CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHC---
T ss_pred --------CHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhCC
Confidence 1467789999999999999999999999998876543
No 52
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.6e-41 Score=389.51 Aligned_cols=382 Identities=23% Similarity=0.308 Sum_probs=226.9
Q ss_pred cEEEEEcCCCCCccccCCCcCCCCCC-------------CEEEeeCCcccccCCCCccCCCCCcEEeccCCCcCCccchh
Q 002278 39 SVVSLNLSSLNLGGEISPSIGDLRNL-------------QSIDFQGNKLTGQIPDEIGNCGSLVHIELSDNSLYGDIPFS 105 (943)
Q Consensus 39 ~v~~L~l~~~~~~~~~~~~l~~l~~L-------------~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 105 (943)
+++.|++++|+++|.+|.+++.+.+| ++|++++|++++ +|.. .++|++|++++|++++ +|..
T Consensus 35 ~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~ 109 (454)
T 1jl5_A 35 SKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPEL 109 (454)
T ss_dssp CHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCCC
T ss_pred chhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCC---cCCCCEEEccCCcCCc-cccc
Confidence 45678999999999999999999876 888888888874 4542 3678888888888885 5643
Q ss_pred ccccccceEEEecCcccccCCCcccCCCCCCcEEEEeccccccccchhccccccceeccccCCccCCCCCcccccccccc
Q 002278 106 ISKLKQLEFLNLKNNQLTGPIPSTLTQIPNLKTLDLARNQLTGEIPRLIYWNEVLQYLGLRGNALTGMLSPDMCQLTGLW 185 (943)
Q Consensus 106 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 185 (943)
+++|++|++++|++++ +|.. .++|++|+|++|++++ +| .|..+++|++|++++|++++++. . ..+|+
T Consensus 110 ---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~lp~-~---~~~L~ 176 (454)
T 1jl5_A 110 ---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKKLPD-L---PPSLE 176 (454)
T ss_dssp ---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSCCCC-C---CTTCC
T ss_pred ---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcccCC-C---ccccc
Confidence 4778888888888874 3322 1678888888888875 55 47777888888888888877532 2 34777
Q ss_pred eeeccceecccccCCCCcCCCcccEEEeecccccCcCCCCCCcceEeEEEecCccccccCCccccccCCCcEEecCCCCC
Q 002278 186 YFDVRGNNLTGTIPDSIGNCTSFEILDISYNQITGEIPYNIGFLQVATLSLQGNKLTGKIPEVIGLMQALAVLDLSENEL 265 (943)
Q Consensus 186 ~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l 265 (943)
+|++++|++++ +| .++++++|++|++++|++++ +|.. ..+|+.|++++|.+
T Consensus 177 ~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~--------------------------~~~L~~L~l~~n~l 227 (454)
T 1jl5_A 177 FIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL--------------------------PLSLESIVAGNNIL 227 (454)
T ss_dssp EEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC--------------------------CTTCCEEECCSSCC
T ss_pred EEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC--------------------------cCcccEEECcCCcC
Confidence 77888887775 44 57777777777777777763 3321 12566666666666
Q ss_pred CCCCCcccCCCCCcceEEecCCCCCCCCCCCcCCCCcCcEEEcccCccccccccccCCcccceEEEccccccCCcCcccc
Q 002278 266 VGPIPPILGNLSYTGKLYLHGNKLTGPIPPELGNMSKLSYLQLQNNQLVGTIPAELGKLEQLFELNLADNNLEGPIPHNI 345 (943)
Q Consensus 266 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~ 345 (943)
. .+| .+..+++|++|++++|++++ +|.. +++|++|++++|++++ +|.. +++|+.|++++|++++. |..
T Consensus 228 ~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~~- 295 (454)
T 1jl5_A 228 E-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SEL- 295 (454)
T ss_dssp S-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SCC-
T ss_pred C-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cCc-
Confidence 5 344 25566666666666666664 3322 3566667777776664 3332 25667777777776642 111
Q ss_pred cCCCcCcEEEeeCCcccCccccccccc-CccceeeccCCcCCCCCCCCCCCCCCccEEecCCCcCCCccCCCcccccccc
Q 002278 346 SSCTALNQFNVHGNRLSGAIPSSFRNL-GSLTYLNLSRNNFKGKVPTELGRIINLDTLDLSVNNFSGSVPASIGDLEHLL 424 (943)
Q Consensus 346 ~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 424 (943)
.++|+.|++++|++++. + .+ ++|+.|++++|++++ +|.. +++|+.|++++|+++ .+|. .+++|+
T Consensus 296 --~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~ 360 (454)
T 1jl5_A 296 --PPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLK 360 (454)
T ss_dssp --CTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCC
T ss_pred --CCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhcc
Confidence 15677777777777642 1 23 478888888888875 4543 467888888888888 4555 467888
Q ss_pred eeecccccccc--cCCccccCCCccceecccCccccccCChhhhcccccceecccCcccCC--CCCCcCccccCCccccc
Q 002278 425 TLNLSRNHLNG--LLPAEFGNLRSIQTIDMSFNQLSGSIPAELGQLQNIISLILNNNNLQG--GIPDQLSNCFSLSNLNV 500 (943)
Q Consensus 425 ~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~l 500 (943)
+|++++|++++ .+|..+.. |+.|.+.+.+|.. +++|+.|++++|++++ .+|. .|+.|.+
T Consensus 361 ~L~L~~N~l~~l~~ip~~l~~--------L~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~------sl~~L~~ 423 (454)
T 1jl5_A 361 QLHVEYNPLREFPDIPESVED--------LRMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPE------SVEDLRM 423 (454)
T ss_dssp EEECCSSCCSSCCCCCTTCCE--------EECCC----------------------------------------------
T ss_pred EEECCCCCCCcCCCChHHHHh--------hhhcccccccccc---cCcCCEEECCCCcCCccccchh------hHhheeC
Confidence 88888888887 55665543 2346677777763 5778888899988886 5554 3566778
Q ss_pred CCccccccCCC
Q 002278 501 SYNNLSGIIPP 511 (943)
Q Consensus 501 s~N~l~~~~~~ 511 (943)
.+|.+.+.++.
T Consensus 424 ~~~~~~~~~~~ 434 (454)
T 1jl5_A 424 NSERVVDPYEF 434 (454)
T ss_dssp -----------
T ss_pred cCcccCCcccc
Confidence 88888876653
No 53
>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*
Probab=100.00 E-value=3.4e-41 Score=374.76 Aligned_cols=254 Identities=23% Similarity=0.302 Sum_probs=214.3
Q ss_pred hhccccceEEeeeceEEEEEEEec-CCceEEEEEecccCc------ccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcc
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYP------HNLREFETELETIGSIRHRNIVSLHGYALSPYGN 687 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~------~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 687 (943)
.+.|+..+.||+|+||+||+|..+ +++.||+|.+..... ...+.+.+|+++++.++||||+++++++.+....
T Consensus 11 ~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~ 90 (361)
T 2yab_A 11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTDV 90 (361)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEE
T ss_pred hhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCEE
Confidence 467999999999999999999987 588999999865432 2357899999999999999999999999999999
Q ss_pred eEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCC----ceeecccc
Q 002278 688 LLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENF----DAHLSDFG 763 (943)
Q Consensus 688 ~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~----~~kl~DFG 763 (943)
++||||+++|+|.+++. ....+++..+..++.||+.||+|||+. +|+||||||+||+++.++ .+||+|||
T Consensus 91 ~lv~e~~~gg~L~~~l~---~~~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~~~~~~~vkl~DFG 164 (361)
T 2yab_A 91 VLILELVSGGELFDFLA---QKESLSEEEATSFIKQILDGVNYLHTK---KIAHFDLKPENIMLLDKNIPIPHIKLIDFG 164 (361)
T ss_dssp EEEEECCCSCBHHHHHT---TCSCCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCTTSSSCCEEECCCS
T ss_pred EEEEEcCCCCcHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEeCCCCCccCEEEEecC
Confidence 99999999999999996 345799999999999999999999999 999999999999998776 79999999
Q ss_pred cccccCCCCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccC
Q 002278 764 IARCIPTAMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVD 843 (943)
Q Consensus 764 la~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 843 (943)
+++....... .....||+.|+|||++.+..++.++||||+||++|+|++|+.||.+.........+......+....+
T Consensus 165 ~a~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~ 242 (361)
T 2yab_A 165 LAHEIEDGVE--FKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANITAVSYDFDEEFF 242 (361)
T ss_dssp SCEECCTTCC--CCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHTTCCCCCHHHH
T ss_pred CceEcCCCCc--cccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhcCCCCCchhc
Confidence 9987754322 23346999999999999999999999999999999999999999887665555444433332222222
Q ss_pred cccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 002278 844 PEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLV 885 (943)
Q Consensus 844 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~ 885 (943)
+.++ ..+.+++..|+..||++|||+.|+++|-+
T Consensus 243 ~~~s---------~~~~~li~~~L~~dP~~R~t~~e~l~hp~ 275 (361)
T 2yab_A 243 SQTS---------ELAKDFIRKLLVKETRKRLTIQEALRHPW 275 (361)
T ss_dssp TTSC---------HHHHHHHHHHSCSSTTTSCCHHHHHTSTT
T ss_pred cCCC---------HHHHHHHHHHCCCChhHCcCHHHHhcCcC
Confidence 2222 45678999999999999999999998755
No 54
>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}
Probab=100.00 E-value=3.7e-41 Score=365.30 Aligned_cols=263 Identities=29% Similarity=0.408 Sum_probs=213.9
Q ss_pred hhccccceEEeeeceEEEEEEEec-CCceEEEEEecccCc---ccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEE
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYP---HNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLF 690 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 690 (943)
.++|+..+.||+|+||.||+|++. .++.||+|++..... ...+.+.+|+++++.++||||+++++++.+++..++|
T Consensus 10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv 89 (294)
T 4eqm_A 10 NERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYLV 89 (294)
T ss_dssp ETTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEEE
T ss_pred hccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEEE
Confidence 467999999999999999999976 578999999854432 3346788999999999999999999999999999999
Q ss_pred EEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccCC
Q 002278 691 YDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIPT 770 (943)
Q Consensus 691 ~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~~ 770 (943)
|||+++|+|.+++. ....+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++....
T Consensus 90 ~e~~~g~~L~~~l~---~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~ 163 (294)
T 4eqm_A 90 MEYIEGPTLSEYIE---SHGPLSVDTAINFTNQILDGIKHAHDM---RIVHRDIKPQNILIDSNKTLKIFDFGIAKALSE 163 (294)
T ss_dssp EECCCSCBHHHHHH---HHCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCSSSTTC--
T ss_pred EeCCCCCCHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEEeCCCcccccc
Confidence 99999999999996 345699999999999999999999999 999999999999999999999999999987755
Q ss_pred CCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccc-cccccCcccccC
Q 002278 771 AMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNT-VMEAVDPEVSVT 849 (943)
Q Consensus 771 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 849 (943)
..........||+.|+|||++.+..++.++||||+||++|||+||+.||.+...............+ ......+.++
T Consensus 164 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 241 (294)
T 4eqm_A 164 TSLTQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGETAVSIAIKHIQDSVPNVTTDVRKDIP-- 241 (294)
T ss_dssp -----------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSSCHHHHHHHHHSSCCCCHHHHSCTTSC--
T ss_pred ccccccCccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHhhccCCCcchhcccCCC--
Confidence 4434444566999999999999999999999999999999999999999887765554443332221 1122222222
Q ss_pred ccCHHHHHHHHHHHHHccCCCCCCCC-CHHHHHHHHhhcCCCCC
Q 002278 850 CVDLSAVRKTFQLALLCTKRYPSERP-TMQEVARVLVSLLPAPP 892 (943)
Q Consensus 850 ~~~~~~~~~l~~l~~~cl~~dP~~RP-t~~el~~~L~~~~~~~~ 892 (943)
..+.+++.+|++.||++|| +++++.+.|+.+.....
T Consensus 242 -------~~l~~li~~~l~~dp~~R~~~~~~l~~~l~~~~~~~~ 278 (294)
T 4eqm_A 242 -------QSLSNVILRATEKDKANRYKTIQEMKDDLSSVLHENR 278 (294)
T ss_dssp -------HHHHHHHHHHSCSSGGGSCSSHHHHHHHHHTSSSSSS
T ss_pred -------HHHHHHHHHHhcCCHhHccccHHHHHHHHHHHHhhcc
Confidence 4677899999999999998 99999999988766544
No 55
>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...
Probab=100.00 E-value=5.4e-41 Score=369.75 Aligned_cols=251 Identities=19% Similarity=0.244 Sum_probs=211.4
Q ss_pred hhccccceEEeeeceEEEEEEEec-CCceEEEEEeccc---CcccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEE
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQ---YPHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLF 690 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 690 (943)
.++|+..+.||+|+||+||+|+.+ +++.||+|++.+. .....+.+.+|+++++.++||||+++++++.+.+..++|
T Consensus 4 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~lv 83 (337)
T 1o6l_A 4 MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFV 83 (337)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEEE
T ss_pred hHHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEEEE
Confidence 468999999999999999999976 5889999998653 234567788999999999999999999999999999999
Q ss_pred EEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccCC
Q 002278 691 YDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIPT 770 (943)
Q Consensus 691 ~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~~ 770 (943)
|||+++|+|.+++. ....+++..+..++.||+.||+|||++ +|+||||||+||+++.++++||+|||+++....
T Consensus 84 ~E~~~gg~L~~~l~---~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~ 157 (337)
T 1o6l_A 84 MEYANGGELFFHLS---RERVFTEERARFYGAEIVSALEYLHSR---DVVYRDIKLENLMLDKDGHIKITDFGLCKEGIS 157 (337)
T ss_dssp EECCTTCBHHHHHH---HHSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCSCC
T ss_pred EeCCCCCcHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCcCCHHHEEECCCCCEEEeeccchhhccc
Confidence 99999999999986 345689999999999999999999999 999999999999999999999999999986433
Q ss_pred CCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCcccccCc
Q 002278 771 AMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPEVSVTC 850 (943)
Q Consensus 771 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 850 (943)
... .....+||+.|+|||++.+..++.++||||+||++|||++|+.||.+.........+......++.. +
T Consensus 158 ~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i~~~~~~~p~~----~---- 228 (337)
T 1o6l_A 158 DGA-TMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIRFPRT----L---- 228 (337)
T ss_dssp TTC-CBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTT----S----
T ss_pred CCC-cccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCCCHHHHHHHHHcCCCCCCCC----C----
Confidence 222 2234569999999999999999999999999999999999999998766544333333222222111 1
Q ss_pred cCHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHHHHh
Q 002278 851 VDLSAVRKTFQLALLCTKRYPSERP-----TMQEVARVLV 885 (943)
Q Consensus 851 ~~~~~~~~l~~l~~~cl~~dP~~RP-----t~~el~~~L~ 885 (943)
...+.+++..||+.||++|| ++.|+++|-+
T Consensus 229 -----s~~~~~li~~lL~~dP~~R~g~~~~~~~ei~~h~~ 263 (337)
T 1o6l_A 229 -----SPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRF 263 (337)
T ss_dssp -----CHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTSGG
T ss_pred -----CHHHHHHHHHHhhcCHHHhcCCCCCCHHHHHcCCC
Confidence 14567899999999999999 9999998754
No 56
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*
Probab=100.00 E-value=7.4e-41 Score=367.53 Aligned_cols=266 Identities=24% Similarity=0.333 Sum_probs=220.8
Q ss_pred cccCHHHHHHHhhc----------cccceEEeeeceEEEEEEEec-CCceEEEEEecccCcccHHHHHHHHHHHhcCCCC
Q 002278 604 AIHTFDDIMRSTEN----------LSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYPHNLREFETELETIGSIRHR 672 (943)
Q Consensus 604 ~~~~~~~~~~~~~~----------~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~ 672 (943)
..++++++..+++. |...+.||+|+||.||+|+.+ +++.||||++........+.+.+|+.+++.++||
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~ 102 (321)
T 2c30_A 23 GVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHF 102 (321)
T ss_dssp --CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCCCT
T ss_pred CcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhCCCC
Confidence 45677888777664 777789999999999999987 6899999999776666778899999999999999
Q ss_pred CcceeeeEEecCCcceEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEEC
Q 002278 673 NIVSLHGYALSPYGNLLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILID 752 (943)
Q Consensus 673 niv~l~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~ 752 (943)
||+++++++...+..++||||+++|+|.+++. ...+++..+..++.|++.||+|||+. +|+||||||+||+++
T Consensus 103 niv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~----~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~ 175 (321)
T 2c30_A 103 NVVEMYKSYLVGEELWVLMEFLQGGALTDIVS----QVRLNEEQIATVCEAVLQALAYLHAQ---GVIHRDIKSDSILLT 175 (321)
T ss_dssp TBCCEEEEEEETTEEEEEECCCCSCBHHHHHT----TCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEC
T ss_pred CcceEEEEEEECCEEEEEEecCCCCCHHHHHH----hcCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEC
Confidence 99999999999999999999999999999985 34689999999999999999999999 999999999999999
Q ss_pred CCCceeecccccccccCCCCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHh
Q 002278 753 ENFDAHLSDFGIARCIPTAMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSK 832 (943)
Q Consensus 753 ~~~~~kl~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~ 832 (943)
.++.+||+|||+++........ .....||+.|+|||++.+..++.++|||||||++|||++|+.||.............
T Consensus 176 ~~~~~kl~Dfg~~~~~~~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~pf~~~~~~~~~~~~~ 254 (321)
T 2c30_A 176 LDGRVKLSDFGFCAQISKDVPK-RKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEPPYFSDSPVQAMKRLR 254 (321)
T ss_dssp TTCCEEECCCTTCEECCSSSCC-BCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHH
T ss_pred CCCcEEEeeeeeeeecccCccc-cccccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHh
Confidence 9999999999999876544322 233469999999999999999999999999999999999999998766544433322
Q ss_pred ccccccccccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhc
Q 002278 833 ADDNTVMEAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSL 887 (943)
Q Consensus 833 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~ 887 (943)
.... +..... ......+.+++..||+.||++|||+.+++++.+-.
T Consensus 255 ~~~~-------~~~~~~---~~~~~~l~~li~~~l~~dp~~Rps~~ell~hp~~~ 299 (321)
T 2c30_A 255 DSPP-------PKLKNS---HKVSPVLRDFLERMLVRDPQERATAQELLDHPFLL 299 (321)
T ss_dssp HSSC-------CCCTTG---GGSCHHHHHHHHHHSCSSTTTSCCHHHHHTSGGGG
T ss_pred cCCC-------CCcCcc---ccCCHHHHHHHHHHccCChhhCcCHHHHhcChhhc
Confidence 2111 111100 01124577899999999999999999999986643
No 57
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Probab=100.00 E-value=1.5e-41 Score=373.16 Aligned_cols=252 Identities=19% Similarity=0.279 Sum_probs=211.7
Q ss_pred HhhccccceEEeeeceEEEEEEEec-CCceEEEEEecccC--cccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEE
Q 002278 614 STENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQY--PHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLF 690 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 690 (943)
..++|+..+.||+|+||.||+|.+. +++.||||++.... ....+.+.+|+++++.++||||+++++++...+..++|
T Consensus 13 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv 92 (328)
T 3fe3_A 13 HIGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETEKTLYLI 92 (328)
T ss_dssp EETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred ccCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEE
Confidence 4568999999999999999999974 68999999986542 33456788999999999999999999999999999999
Q ss_pred EEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccCC
Q 002278 691 YDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIPT 770 (943)
Q Consensus 691 ~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~~ 770 (943)
|||+++|+|.+++. ....+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++....
T Consensus 93 ~e~~~~~~L~~~l~---~~~~l~~~~~~~~~~qi~~al~~lH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~ 166 (328)
T 3fe3_A 93 MEYASGGEVFDYLV---AHGRMKEKEARSKFRQIVSAVQYCHQK---RIVHRDLKAENLLLDADMNIKIADFGFSNEFTV 166 (328)
T ss_dssp ECCCTTCBHHHHHH---HHCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECSTTCCGGGSS
T ss_pred EECCCCCcHHHHHH---HcCCCCHHHHHHHHHHHHHHHHHHHHC---CEeccCCCHHHEEEcCCCCEEEeeccCceecCC
Confidence 99999999999986 345699999999999999999999999 999999999999999999999999999987654
Q ss_pred CCCceeeeEecccceeCccccccCCCC-CcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCcccccC
Q 002278 771 AMPHASTFVLGTIGYIDPEYAHTSRLN-EKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPEVSVT 849 (943)
Q Consensus 771 ~~~~~~~~~~gt~~y~aPE~~~~~~~~-~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (943)
... ....+||+.|+|||++.+..+. .++||||+||++|||++|+.||.+.................+.. +
T Consensus 167 ~~~--~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~p~~----~--- 237 (328)
T 3fe3_A 167 GGK--LDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQNLKELRERVLRGKYRIPFY----M--- 237 (328)
T ss_dssp SCG--GGTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTT----S---
T ss_pred CCc--cccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCCC----C---
Confidence 322 2334699999999999988765 79999999999999999999998776544433333322222111 1
Q ss_pred ccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhh
Q 002278 850 CVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVS 886 (943)
Q Consensus 850 ~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~ 886 (943)
...+.+++.+|+..||++|||+.|+++|-+-
T Consensus 238 ------s~~~~~li~~~L~~dP~~R~t~~eil~h~~~ 268 (328)
T 3fe3_A 238 ------STDCENLLKRFLVLNPIKRGTLEQIMKDRWI 268 (328)
T ss_dssp ------CHHHHHHHHHHCCSSTTTSCCHHHHTTCTTT
T ss_pred ------CHHHHHHHHHHCCCChhHCcCHHHHhcCHhh
Confidence 1456789999999999999999999998653
No 58
>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*
Probab=100.00 E-value=7.5e-41 Score=358.03 Aligned_cols=260 Identities=25% Similarity=0.381 Sum_probs=217.5
Q ss_pred HhhccccceEEeeeceEEEEEEEecCCceEEEEEecccCcccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEEEEE
Q 002278 614 STENLSEKYIVGYGASSTVYKCALKNSRPIAVKKLYNQYPHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLFYDY 693 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 693 (943)
..++|+..+.||+|+||.||+|.++++..||+|++.... ...+++.+|++++++++||||+++++++.+....++||||
T Consensus 6 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 84 (268)
T 3sxs_A 6 KREEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGS-MSEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTEY 84 (268)
T ss_dssp CGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTT-BCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEEC
T ss_pred chhheeeeeeeccCCCceEEEEEecCceeEEEEEeccCC-CcHHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEEEEc
Confidence 356899999999999999999999988899999987543 3457799999999999999999999999999999999999
Q ss_pred ccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccCCCCC
Q 002278 694 MVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIPTAMP 773 (943)
Q Consensus 694 ~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~~~~~ 773 (943)
+++|+|.+++.. ....+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++.......
T Consensus 85 ~~~~~L~~~l~~--~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~ 159 (268)
T 3sxs_A 85 ISNGCLLNYLRS--HGKGLEPSQLLEMCYDVCEGMAFLESH---QFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQY 159 (268)
T ss_dssp CTTCBHHHHHHH--HGGGCCHHHHHHHHHHHHHHHHHHHHT---TEEESSCSGGGEEECTTCCEEECCTTCEEECCTTCE
T ss_pred cCCCcHHHHHHH--cCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCcCcceEEECCCCCEEEccCccceecchhhh
Confidence 999999999863 234599999999999999999999999 999999999999999999999999999987755433
Q ss_pred ceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHh-CCCCCCCCccHHHHHHHhccccccccccCcccccCccC
Q 002278 774 HASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILT-GKKAVDNESNLHQLIMSKADDNTVMEAVDPEVSVTCVD 852 (943)
Q Consensus 774 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 852 (943)
.......+|+.|+|||++.+..++.++||||+|+++|||+| |+.||.................... +..
T Consensus 160 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~----~~~------ 229 (268)
T 3sxs_A 160 VSSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTNSEVVLKVSQGHRLYR----PHL------ 229 (268)
T ss_dssp EECCSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTCCCCC----CTT------
T ss_pred hcccCCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCccccChHHHHHHHHcCCCCCC----CCc------
Confidence 33333456778999999999899999999999999999999 9999987665544433332221111 111
Q ss_pred HHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCCCC
Q 002278 853 LSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLPAP 891 (943)
Q Consensus 853 ~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~~~ 891 (943)
....+.+++..||+.||++|||+.+++++|+.+....
T Consensus 230 --~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~~~ 266 (268)
T 3sxs_A 230 --ASDTIYQIMYSCWHELPEKRPTFQQLLSSIEPLREKD 266 (268)
T ss_dssp --SCHHHHHHHHHTTCSSGGGSCCHHHHHHHHGGGCC--
T ss_pred --ChHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhhcc
Confidence 1146778999999999999999999999999887643
No 59
>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.4e-40 Score=366.16 Aligned_cols=254 Identities=21% Similarity=0.294 Sum_probs=212.9
Q ss_pred hhccccceEEeeeceEEEEEEEec-CCceEEEEEecccCc------ccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcc
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYP------HNLREFETELETIGSIRHRNIVSLHGYALSPYGN 687 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~------~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 687 (943)
.+.|...+.||+|+||.||+|..+ +++.||+|++..... ...+.+.+|+++++.++||||+++++++.+....
T Consensus 10 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~ 89 (326)
T 2y0a_A 10 DDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDV 89 (326)
T ss_dssp HHHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred ccceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEE
Confidence 467999999999999999999986 578999999865432 2467899999999999999999999999999999
Q ss_pred eEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCC----ceeecccc
Q 002278 688 LLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENF----DAHLSDFG 763 (943)
Q Consensus 688 ~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~----~~kl~DFG 763 (943)
++||||+++|+|.+++. ....+++..+..++.|++.||+|||+. +|+||||||+||+++.++ .+||+|||
T Consensus 90 ~lv~e~~~~~~L~~~l~---~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg 163 (326)
T 2y0a_A 90 ILILELVAGGELFDFLA---EKESLTEEEATEFLKQILNGVYYLHSL---QIAHFDLKPENIMLLDRNVPKPRIKIIDFG 163 (326)
T ss_dssp EEEEECCCSCBHHHHHT---TSSCCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESCSSSSSCCEEECCCT
T ss_pred EEEEEcCCCCCHHHHHH---hcCCcCHHHHHHHHHHHHHHHHHHHHC---CeEcCCCCHHHEEEecCCCCCCCEEEEECC
Confidence 99999999999999996 345699999999999999999999999 999999999999999877 79999999
Q ss_pred cccccCCCCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccC
Q 002278 764 IARCIPTAMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVD 843 (943)
Q Consensus 764 la~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 843 (943)
+++....... .....||+.|+|||++.+..++.++||||+||++|||++|+.||.+......................
T Consensus 164 ~a~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~ 241 (326)
T 2y0a_A 164 LAHKIDFGNE--FKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANVSAVNYEFEDEYF 241 (326)
T ss_dssp TCEECCTTSC--CCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHHTCCCCCHHHH
T ss_pred CCeECCCCCc--cccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHhcCCCcCcccc
Confidence 9987754322 22346999999999999999999999999999999999999999877655544443332222222111
Q ss_pred cccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 002278 844 PEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLV 885 (943)
Q Consensus 844 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~ 885 (943)
+.+ ...+.+++..||+.||++|||+.++++|-+
T Consensus 242 ~~~---------~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~ 274 (326)
T 2y0a_A 242 SNT---------SALAKDFIRRLLVKDPKKRMTIQDSLQHPW 274 (326)
T ss_dssp TTS---------CHHHHHHHHHHSCSSGGGSCCHHHHHHSTT
T ss_pred ccC---------CHHHHHHHHHHccCChhhCCCHHHHhcCCC
Confidence 111 145678999999999999999999999855
No 60
>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=100.00 E-value=6.6e-41 Score=358.65 Aligned_cols=257 Identities=27% Similarity=0.395 Sum_probs=214.5
Q ss_pred hhccccceEEeeeceEEEEEEEecCCceEEEEEecccCcccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEEEEEc
Q 002278 615 TENLSEKYIVGYGASSTVYKCALKNSRPIAVKKLYNQYPHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLFYDYM 694 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 694 (943)
.++|+..+.||+|+||+||+|.+.+++.||+|++... ....+.+.+|++++++++||||+++++++.++...++||||+
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 87 (269)
T 4hcu_A 9 PSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREG-AMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFM 87 (269)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTT-SBCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEECC
T ss_pred hhhceeeheecCCCccEEEEEEecCCCeEEEEEeccc-ccCHHHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEEEeC
Confidence 4678999999999999999999988899999998754 334578999999999999999999999999999999999999
Q ss_pred cCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccCCCCCc
Q 002278 695 VNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIPTAMPH 774 (943)
Q Consensus 695 ~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~~~~~~ 774 (943)
++|+|.+++.. ....+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++........
T Consensus 88 ~~~~L~~~l~~--~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~ 162 (269)
T 4hcu_A 88 EHGCLSDYLRT--QRGLFAAETLLGMCLDVCEGMAYLEEA---CVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYT 162 (269)
T ss_dssp TTCBHHHHHHT--TTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECGGGCEEECCTTGGGGBCCHHHH
T ss_pred CCCcHHHHHHh--cCcccCHHHHHHHHHHHHHHHHHHHhC---CeecCCcchheEEEcCCCCEEeccccccccccccccc
Confidence 99999999964 334689999999999999999999999 9999999999999999999999999999876443222
Q ss_pred eeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHh-CCCCCCCCccHHHHHHHhccccccccccCcccccCccCH
Q 002278 775 ASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILT-GKKAVDNESNLHQLIMSKADDNTVMEAVDPEVSVTCVDL 853 (943)
Q Consensus 775 ~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 853 (943)
......||+.|+|||++.+..++.++||||+|+++|||++ |+.||................... .+..
T Consensus 163 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~~~~~~~~~~~~~~~~----~~~~------- 231 (269)
T 4hcu_A 163 SSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGFRLY----KPRL------- 231 (269)
T ss_dssp STTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTTCCCC----CCTT-------
T ss_pred cccCcccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHhcCccCC----CCCc-------
Confidence 2223346788999999999999999999999999999999 999998766544333322221111 1110
Q ss_pred HHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCC
Q 002278 854 SAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLP 889 (943)
Q Consensus 854 ~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~ 889 (943)
....+.+++..||+.||++|||+.+++++|+.+..
T Consensus 232 -~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~l~~ 266 (269)
T 4hcu_A 232 -ASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIAE 266 (269)
T ss_dssp -SCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHccCCcccCcCHHHHHHHHHHHHH
Confidence 12467789999999999999999999999987653
No 61
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Probab=100.00 E-value=6.5e-41 Score=375.34 Aligned_cols=260 Identities=27% Similarity=0.417 Sum_probs=201.5
Q ss_pred hhccccceEEeeeceEEEEEEEec----CCceEEEEEecccC-cccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceE
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK----NSRPIAVKKLYNQY-PHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLL 689 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~----~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 689 (943)
.++|+..+.||+|+||.||+|+++ .+..||||++.... ....+.+.+|++++++++||||+++++++.+....++
T Consensus 44 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l 123 (373)
T 2qol_A 44 ATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMI 123 (373)
T ss_dssp GGGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEE
T ss_pred HhhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCceEE
Confidence 468999999999999999999875 46789999987543 3345678999999999999999999999999999999
Q ss_pred EEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccC
Q 002278 690 FYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIP 769 (943)
Q Consensus 690 v~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~ 769 (943)
||||+++|+|.+++.. ....+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++...
T Consensus 124 v~e~~~~~sL~~~l~~--~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~ 198 (373)
T 2qol_A 124 VTEYMENGSLDSFLRK--HDAQFTVIQLVGMLRGIASGMKYLSDM---GYVHRDLAARNILINSNLVCKVSDFGLGRVLE 198 (373)
T ss_dssp EEECCTTCBHHHHHHT--TTTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCC-------
T ss_pred EEeCCCCCcHHHHHHh--CCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCcceEEEcCCCCEEECcCccccccc
Confidence 9999999999999974 234689999999999999999999999 99999999999999999999999999998765
Q ss_pred CCCCce--eeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHh-CCCCCCCCccHHHHHHHhccccccccccCccc
Q 002278 770 TAMPHA--STFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILT-GKKAVDNESNLHQLIMSKADDNTVMEAVDPEV 846 (943)
Q Consensus 770 ~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 846 (943)
...... .....+++.|+|||++.+..++.++|||||||++|||++ |+.||............... .... ...
T Consensus 199 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~~~~~~~~~i~~~-~~~~--~~~-- 273 (373)
T 2qol_A 199 DDPEAAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSNQDVIKAVDEG-YRLP--PPM-- 273 (373)
T ss_dssp ---------------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTCCHHHHHHHHHTT-EECC--CCT--
T ss_pred cCCccceeccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcC-CCCC--CCc--
Confidence 432211 122235778999999999999999999999999999998 99999876544332222111 1100 011
Q ss_pred ccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCCCC
Q 002278 847 SVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLPAP 891 (943)
Q Consensus 847 ~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~~~ 891 (943)
.....+.+++..||+.||++||++.++++.|+.+....
T Consensus 274 -------~~~~~l~~li~~cl~~dp~~RPs~~~i~~~L~~~~~~~ 311 (373)
T 2qol_A 274 -------DCPAALYQLMLDCWQKDRNNRPKFEQIVSILDKLIRNP 311 (373)
T ss_dssp -------TCBHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHCG
T ss_pred -------cccHHHHHHHHHHhCcChhhCcCHHHHHHHHHHHHhCc
Confidence 11256789999999999999999999999998876543
No 62
>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.7e-40 Score=364.22 Aligned_cols=256 Identities=18% Similarity=0.236 Sum_probs=214.8
Q ss_pred hhccccceEEeeeceEEEEEEEec-CCceEEEEEecccCcccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEEEEE
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYPHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLFYDY 693 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 693 (943)
.++|+..+.||+|+||+||+|.++ +++.||+|.+... ......+.+|+++++.++||||+++++++.+.+..++||||
T Consensus 4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~-~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e~ 82 (321)
T 1tki_A 4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVK-GTDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEF 82 (321)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCC-THHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECC
T ss_pred hhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecC-cccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEEEEe
Confidence 468999999999999999999987 4788999988643 34456788999999999999999999999999999999999
Q ss_pred ccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECC--CCceeecccccccccCCC
Q 002278 694 MVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDE--NFDAHLSDFGIARCIPTA 771 (943)
Q Consensus 694 ~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~--~~~~kl~DFGla~~~~~~ 771 (943)
+++|+|.+++.. ....+++.++..++.|++.||+|||+. +|+||||||+||+++. ++.+||+|||+++.....
T Consensus 83 ~~g~~L~~~l~~--~~~~~~~~~~~~i~~qi~~al~~lH~~---givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~~~ 157 (321)
T 1tki_A 83 ISGLDIFERINT--SAFELNEREIVSYVHQVCEALQFLHSH---NIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPG 157 (321)
T ss_dssp CCCCBHHHHHTS--SSCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTT
T ss_pred CCCCCHHHHHHh--cCCCCCHHHHHHHHHHHHHHHHHHHHC---CCCcCCCCHHHEEEccCCCCCEEEEECCCCeECCCC
Confidence 999999999963 234689999999999999999999999 9999999999999987 789999999999877543
Q ss_pred CCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCcccccCcc
Q 002278 772 MPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPEVSVTCV 851 (943)
Q Consensus 772 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 851 (943)
.......||+.|+|||++.+..++.++||||+||++|||++|+.||.+......................+.++
T Consensus 158 --~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s---- 231 (321)
T 1tki_A 158 --DNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETNQQIIENIMNAEYTFDEEAFKEIS---- 231 (321)
T ss_dssp --CEEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCCCCHHHHTTSC----
T ss_pred --CccccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCCCHHHHHHHHHcCCCCCChhhhccCC----
Confidence 23345679999999999999889999999999999999999999998776554444433333322222222222
Q ss_pred CHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhc
Q 002278 852 DLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSL 887 (943)
Q Consensus 852 ~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~ 887 (943)
..+.+++..|+..||++|||+.|+++|-+-.
T Consensus 232 -----~~~~~li~~~L~~dp~~Rpt~~e~l~hp~~~ 262 (321)
T 1tki_A 232 -----IEAMDFVDRLLVKERKSRMTASEALQHPWLK 262 (321)
T ss_dssp -----HHHHHHHHTTSCSSGGGSCCHHHHHHSHHHH
T ss_pred -----HHHHHHHHHHcCCChhHCcCHHHHhcChhhc
Confidence 4677899999999999999999999987643
No 63
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*
Probab=100.00 E-value=5.2e-41 Score=378.68 Aligned_cols=262 Identities=21% Similarity=0.235 Sum_probs=214.6
Q ss_pred HHHHHHhhccccceEEeeeceEEEEEEEec-CCceEEEEEecccC---cccHHHHHHHHHHHhcCCCCCcceeeeEEecC
Q 002278 609 DDIMRSTENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQY---PHNLREFETELETIGSIRHRNIVSLHGYALSP 684 (943)
Q Consensus 609 ~~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~ 684 (943)
.++....++|+..+.||+|+||+||+|+.+ +++.||+|++.+.. ....+.+.+|+++++.++|||||++++++.++
T Consensus 62 ~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~ 141 (410)
T 3v8s_A 62 RDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDD 141 (410)
T ss_dssp HHHSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEECS
T ss_pred HhcccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEEC
Confidence 444456789999999999999999999987 47889999986421 22234578899999999999999999999999
Q ss_pred CcceEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeeccccc
Q 002278 685 YGNLLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGI 764 (943)
Q Consensus 685 ~~~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGl 764 (943)
...++||||+++|+|.+++. ...+++..+..++.|++.||+|||++ +|+||||||+||+++.++++||+|||+
T Consensus 142 ~~~~lV~E~~~gg~L~~~l~----~~~~~e~~~~~~~~qi~~aL~~LH~~---givHrDLKp~NILl~~~g~ikL~DFG~ 214 (410)
T 3v8s_A 142 RYLYMVMEYMPGGDLVNLMS----NYDVPEKWARFYTAEVVLALDAIHSM---GFIHRDVKPDNMLLDKSGHLKLADFGT 214 (410)
T ss_dssp SEEEEEECCCTTEEHHHHHH----HCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTT
T ss_pred CEEEEEEeCCCCCcHHHHHH----cCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCCHHHeeECCCCCEEEeccce
Confidence 99999999999999999986 23589999999999999999999999 999999999999999999999999999
Q ss_pred ccccCCCCCceeeeEecccceeCccccccCC----CCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhcccccccc
Q 002278 765 ARCIPTAMPHASTFVLGTIGYIDPEYAHTSR----LNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVME 840 (943)
Q Consensus 765 a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~----~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~ 840 (943)
|+.............+||+.|+|||++.+.. ++.++|||||||++|||++|+.||.+.+.......+........-
T Consensus 215 a~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~ 294 (410)
T 3v8s_A 215 CMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADSLVGTYSKIMNHKNSLTF 294 (410)
T ss_dssp CEECCTTSEEECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTHHHHCCC
T ss_pred eEeeccCCcccccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCCCChhhHHHHHHhccccccC
Confidence 9877554333333567999999999998765 789999999999999999999999987665554444332211111
Q ss_pred ccCcccccCccCHHHHHHHHHHHHHccCCCCCC--CCCHHHHHHHHhh
Q 002278 841 AVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSE--RPTMQEVARVLVS 886 (943)
Q Consensus 841 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~--RPt~~el~~~L~~ 886 (943)
...+.++ ..+.+++..|+..+|.+ ||++.|+++|-+-
T Consensus 295 p~~~~~s---------~~~~~li~~lL~~~~~rlgR~~~~ei~~Hp~f 333 (410)
T 3v8s_A 295 PDDNDIS---------KEAKNLICAFLTDREVRLGRNGVEEIKRHLFF 333 (410)
T ss_dssp CTTCCCC---------HHHHHHHHHHSSCGGGCTTSSCHHHHHTSGGG
T ss_pred CCccccc---------HHHHHHHHHHccChhhhCCCCCHHHHhcCccc
Confidence 1111121 45678999999999998 9999999998764
No 64
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}
Probab=100.00 E-value=1.3e-40 Score=379.81 Aligned_cols=256 Identities=21% Similarity=0.241 Sum_probs=213.0
Q ss_pred HhhccccceEEeeeceEEEEEEEec-CCceEEEEEecccC--cccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEE
Q 002278 614 STENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQY--PHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLF 690 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 690 (943)
..++|+..+.||+|+||+||+|..+ +++.||+|++.... ....+.+.+|+++++.++|||||++++++.+++..++|
T Consensus 9 ~~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~lv 88 (444)
T 3soa_A 9 FTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYLI 88 (444)
T ss_dssp HHHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEEE
T ss_pred ccCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEEE
Confidence 4678999999999999999999976 57889999986543 23345788999999999999999999999999999999
Q ss_pred EEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEEC---CCCceeecccccccc
Q 002278 691 YDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILID---ENFDAHLSDFGIARC 767 (943)
Q Consensus 691 ~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~---~~~~~kl~DFGla~~ 767 (943)
|||+++|+|.+.+. ....+++..+..++.|++.||+|||++ +|+||||||+||+++ .++.+||+|||+++.
T Consensus 89 ~E~~~gg~L~~~i~---~~~~~~e~~~~~i~~qil~aL~~lH~~---givHrDlKp~NIll~~~~~~~~vkL~DFG~a~~ 162 (444)
T 3soa_A 89 FDLVTGGELFEDIV---AREYYSEADASHCIQQILEAVLHCHQM---GVVHRNLKPENLLLASKLKGAAVKLADFGLAIE 162 (444)
T ss_dssp ECCCBCCBHHHHHH---HCSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSSTTEEESBSSTTCCEEECCCSSCBC
T ss_pred EEeCCCCCHHHHHH---HcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEeccCCCCcEEEccCceeEE
Confidence 99999999999886 345699999999999999999999999 999999999999998 467899999999987
Q ss_pred cCCCCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCcccc
Q 002278 768 IPTAMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPEVS 847 (943)
Q Consensus 768 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 847 (943)
....... .....||+.|+|||++.+..++.++||||+||++|+|++|++||.+.....................++.++
T Consensus 163 ~~~~~~~-~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s 241 (444)
T 3soa_A 163 VEGEQQA-WFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQHRLYQQIKAGAYDFPSPEWDTVT 241 (444)
T ss_dssp CCTTCCB-CCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTCCCCCTTTTTTSC
T ss_pred ecCCCce-eecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCccHHHHHHHHHhCCCCCCccccccCC
Confidence 6544322 233569999999999999999999999999999999999999998876655544444433333322222222
Q ss_pred cCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 002278 848 VTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLV 885 (943)
Q Consensus 848 ~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~ 885 (943)
..+.+++..|++.||++|||+.|+++|-+
T Consensus 242 ---------~~~~~li~~~L~~dP~~Rpta~e~L~hp~ 270 (444)
T 3soa_A 242 ---------PEAKDLINKMLTINPSKRITAAEALKHPW 270 (444)
T ss_dssp ---------HHHHHHHHHHSCSSTTTSCCHHHHHHSCT
T ss_pred ---------HHHHHHHHHHcCCChhHCCCHHHHhcCcc
Confidence 45778999999999999999999999754
No 65
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7
Probab=100.00 E-value=3e-40 Score=370.45 Aligned_cols=255 Identities=20% Similarity=0.313 Sum_probs=214.3
Q ss_pred hhccccceEEeeeceEEEEEEEec-CCceEEEEEecccCcccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEEEEE
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYPHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLFYDY 693 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 693 (943)
.++|+..+.||+|+||+||+|..+ +++.||+|++..........+.+|+++++.++||||+++++++.+....++||||
T Consensus 50 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~E~ 129 (387)
T 1kob_A 50 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEF 129 (387)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEEC
T ss_pred ccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEEEEc
Confidence 467999999999999999999986 5788999998766555566789999999999999999999999999999999999
Q ss_pred ccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECC--CCceeecccccccccCCC
Q 002278 694 MVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDE--NFDAHLSDFGIARCIPTA 771 (943)
Q Consensus 694 ~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~--~~~~kl~DFGla~~~~~~ 771 (943)
+++|+|.+++.. ....+++.++..++.|++.||+|||+. +|+||||||+||+++. ++.+||+|||+++.....
T Consensus 130 ~~gg~L~~~l~~--~~~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~~~ 204 (387)
T 1kob_A 130 LSGGELFDRIAA--EDYKMSEAEVINYMRQACEGLKHMHEH---SIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPD 204 (387)
T ss_dssp CCCCBHHHHTTC--TTCCBCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTT
T ss_pred CCCCcHHHHHHh--hcCCCCHHHHHHHHHHHHHHHHHHHhC---CeeecccchHHeEEecCCCCceEEEecccceecCCC
Confidence 999999999863 234689999999999999999999999 9999999999999974 577999999999877544
Q ss_pred CCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCcccccCcc
Q 002278 772 MPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPEVSVTCV 851 (943)
Q Consensus 772 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 851 (943)
. ......||+.|+|||++.+..++.++|||||||++|||++|+.||.+......................+.+
T Consensus 205 ~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~----- 277 (387)
T 1kob_A 205 E--IVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDDLETLQNVKRCDWEFDEDAFSSV----- 277 (387)
T ss_dssp S--CEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHHCCCCCCSSTTTTS-----
T ss_pred c--ceeeeccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCccccccC-----
Confidence 2 233456999999999999999999999999999999999999999987665544443333222222211122
Q ss_pred CHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 002278 852 DLSAVRKTFQLALLCTKRYPSERPTMQEVARVLV 885 (943)
Q Consensus 852 ~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~ 885 (943)
...+.+++..||+.||++|||+.|++++-+
T Consensus 278 ----s~~~~~li~~~L~~dP~~Rpt~~ell~hp~ 307 (387)
T 1kob_A 278 ----SPEAKDFIKNLLQKEPRKRLTVHDALEHPW 307 (387)
T ss_dssp ----CHHHHHHHHTTSCSSGGGSCCHHHHHTSTT
T ss_pred ----CHHHHHHHHHHcCCChhHCcCHHHHhhCcc
Confidence 246779999999999999999999999855
No 66
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}
Probab=100.00 E-value=3.7e-41 Score=373.59 Aligned_cols=252 Identities=20% Similarity=0.245 Sum_probs=207.8
Q ss_pred HhhccccceEEeeeceEEEEEEEec-CCceEEEEEeccc---CcccHHHHHHHHHHHhcC-CCCCcceeeeEEecCCcce
Q 002278 614 STENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQ---YPHNLREFETELETIGSI-RHRNIVSLHGYALSPYGNL 688 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~ 688 (943)
..++|+..+.||+|+||+||+|+.+ +++.||+|++.+. .....+.+.+|.++++.+ +||||+++++++.+.+..+
T Consensus 21 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~ 100 (353)
T 3txo_A 21 GIDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLF 100 (353)
T ss_dssp --CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEE
T ss_pred chhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEEE
Confidence 4578999999999999999999976 5789999998653 233456788899999988 6999999999999999999
Q ss_pred EEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeeccccccccc
Q 002278 689 LFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCI 768 (943)
Q Consensus 689 lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~ 768 (943)
+||||+++|+|.+++. ....+++..+..++.|++.||+|||++ +|+||||||+|||++.++++||+|||+|+..
T Consensus 101 lv~E~~~gg~L~~~l~---~~~~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NILl~~~g~ikL~DFG~a~~~ 174 (353)
T 3txo_A 101 FVMEFVNGGDLMFHIQ---KSRRFDEARARFYAAEIISALMFLHDK---GIIYRDLKLDNVLLDHEGHCKLADFGMCKEG 174 (353)
T ss_dssp EEEECCCSCBHHHHHH---HHSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCS
T ss_pred EEEeCCCCCcHHHHHH---HcCCCCHHHHHHHHHHHHHHHHHHHHC---CCcccCCCHHHEEECCCCCEEEccccceeec
Confidence 9999999999999996 345699999999999999999999999 9999999999999999999999999999864
Q ss_pred CCCCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCccccc
Q 002278 769 PTAMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPEVSV 848 (943)
Q Consensus 769 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 848 (943)
.... ......+||+.|+|||++.+..++.++||||+||++|||++|+.||.+.........+......++..+
T Consensus 175 ~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~~~~~i~~~~~~~p~~~------ 247 (353)
T 3txo_A 175 ICNG-VTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAENEDDLFEAILNDEVVYPTWL------ 247 (353)
T ss_dssp CC----------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTTS------
T ss_pred ccCC-ccccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCCCC------
Confidence 3322 223345799999999999999999999999999999999999999988776555544443332222211
Q ss_pred CccCHHHHHHHHHHHHHccCCCCCCCCCH------HHHHHHHh
Q 002278 849 TCVDLSAVRKTFQLALLCTKRYPSERPTM------QEVARVLV 885 (943)
Q Consensus 849 ~~~~~~~~~~l~~l~~~cl~~dP~~RPt~------~el~~~L~ 885 (943)
...+.++++.|++.||++||++ .++++|-+
T Consensus 248 -------~~~~~~li~~lL~~dP~~R~~~~~~~~~~~il~hp~ 283 (353)
T 3txo_A 248 -------HEDATGILKSFMTKNPTMRLGSLTQGGEHAILRHPF 283 (353)
T ss_dssp -------CHHHHHHHHHHTCSSGGGSTTSGGGTCTHHHHTSGG
T ss_pred -------CHHHHHHHHHHhhhCHHHccCCcccCCHHHHhhCCc
Confidence 1356789999999999999998 88888654
No 67
>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B
Probab=100.00 E-value=1.6e-40 Score=370.57 Aligned_cols=255 Identities=22% Similarity=0.298 Sum_probs=212.4
Q ss_pred HhhccccceEEeeeceEEEEEEEec-CCceEEEEEecccC--cccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEE
Q 002278 614 STENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQY--PHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLF 690 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 690 (943)
..++|+..+.||+|+||.||+|.++ +++.||+|++.... ....+.+.+|+++++.++||||+++++++.+.+..++|
T Consensus 27 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv 106 (362)
T 2bdw_A 27 FSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLV 106 (362)
T ss_dssp HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred cccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence 4578999999999999999999976 57899999986543 23456788999999999999999999999999999999
Q ss_pred EEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCC---Cceeecccccccc
Q 002278 691 YDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDEN---FDAHLSDFGIARC 767 (943)
Q Consensus 691 ~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~---~~~kl~DFGla~~ 767 (943)
|||+++|+|.+++. ....+++.++..++.||+.||+|||+. +|+||||||+||+++.+ +.+||+|||+++.
T Consensus 107 ~e~~~gg~L~~~l~---~~~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~ 180 (362)
T 2bdw_A 107 FDLVTGGELFEDIV---AREFYSEADASHCIQQILESIAYCHSN---GIVHRNLKPENLLLASKAKGAAVKLADFGLAIE 180 (362)
T ss_dssp ECCCCSCBHHHHHT---TCSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEESCSSTTCCEEECCCTTCBC
T ss_pred EecCCCCCHHHHHH---HcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCchHHEEEecCCCCCCEEEeecCcceE
Confidence 99999999999886 345689999999999999999999999 99999999999999864 4599999999987
Q ss_pred cCCCCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCcccc
Q 002278 768 IPTAMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPEVS 847 (943)
Q Consensus 768 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 847 (943)
...... .....||+.|+|||++.+..++.++||||+||++|||++|+.||.+......+..............++.+
T Consensus 181 ~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~~~~i~~~~~~~~~~~~~~~- 257 (362)
T 2bdw_A 181 VNDSEA--WHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYAQIKAGAYDYPSPEWDTV- 257 (362)
T ss_dssp CTTCCS--CCCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTGGGGS-
T ss_pred ecCCcc--cccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCCcccccCC-
Confidence 654322 22346999999999999999999999999999999999999999877655444443333322222211222
Q ss_pred cCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 002278 848 VTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLV 885 (943)
Q Consensus 848 ~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~ 885 (943)
...+.+++..||+.||++|||+.++++|-+
T Consensus 258 --------~~~~~~li~~~L~~dP~~R~t~~e~l~hp~ 287 (362)
T 2bdw_A 258 --------TPEAKSLIDSMLTVNPKKRITADQALKVPW 287 (362)
T ss_dssp --------CHHHHHHHHHHSCSSGGGSCCHHHHTTSHH
T ss_pred --------CHHHHHHHHHHcCCChhhCcCHHHHhcCcc
Confidence 245678999999999999999999998865
No 68
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Probab=100.00 E-value=1.7e-40 Score=365.37 Aligned_cols=261 Identities=26% Similarity=0.409 Sum_probs=212.7
Q ss_pred hhccccceEEeeeceEEEEEEEec----CCceEEEEEecccC-cccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceE
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK----NSRPIAVKKLYNQY-PHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLL 689 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~----~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 689 (943)
.++|+..+.||+|+||.||+|.+. .+..||||++.... ....+.+.+|+++++.++||||+++++++.+....++
T Consensus 48 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l 127 (325)
T 3kul_A 48 ASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAMI 127 (325)
T ss_dssp GGGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGCCEE
T ss_pred hhHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCccEE
Confidence 467888999999999999999985 34469999997543 3345678999999999999999999999999999999
Q ss_pred EEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccC
Q 002278 690 FYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIP 769 (943)
Q Consensus 690 v~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~ 769 (943)
||||+++|+|.+++.. ....+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++...
T Consensus 128 v~e~~~~~~L~~~l~~--~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~ 202 (325)
T 3kul_A 128 VTEYMENGSLDTFLRT--HDGQFTIMQLVGMLRGVGAGMRYLSDL---GYVHRDLAARNVLVDSNLVCKVSDFGLSRVLE 202 (325)
T ss_dssp EEECCTTCBHHHHHHT--TTTCSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCSSCEECC
T ss_pred EeeCCCCCcHHHHHHh--cccCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCcceEEECCCCCEEECCCCcccccc
Confidence 9999999999999963 235699999999999999999999999 99999999999999999999999999998775
Q ss_pred CCCCc--eeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHh-CCCCCCCCccHHHHHHHhccccccccccCccc
Q 002278 770 TAMPH--ASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILT-GKKAVDNESNLHQLIMSKADDNTVMEAVDPEV 846 (943)
Q Consensus 770 ~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 846 (943)
..... ......+|+.|+|||++.+..++.++|||||||++|||++ |+.||.+................ . ....
T Consensus 203 ~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~~~~~~~~~~-~--~~~~- 278 (325)
T 3kul_A 203 DDPDAAYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNMTNRDVISSVEEGYRL-P--APMG- 278 (325)
T ss_dssp ----CCEECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTSCHHHHHHHHHTTCCC-C--CCTT-
T ss_pred cCccceeeccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccCCHHHHHHHHHcCCCC-C--CCCC-
Confidence 43222 2223346788999999999999999999999999999999 99999876654433332222110 0 1111
Q ss_pred ccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCCCCC
Q 002278 847 SVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLPAPP 892 (943)
Q Consensus 847 ~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~~~~ 892 (943)
....+.+++..||+.||++|||+.++++.|+.+...+.
T Consensus 279 --------~~~~l~~li~~~l~~dp~~Rps~~eil~~L~~l~~~~~ 316 (325)
T 3kul_A 279 --------CPHALHQLMLDCWHKDRAQRPRFSQIVSVLDALIRSPE 316 (325)
T ss_dssp --------CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSCC
T ss_pred --------cCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhCcc
Confidence 12467889999999999999999999999998875543
No 69
>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.2e-40 Score=364.48 Aligned_cols=260 Identities=25% Similarity=0.387 Sum_probs=210.6
Q ss_pred hhccccceEEeeeceEEEEEEEec-CCceEEEEEecccCcccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEEEEE
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYPHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLFYDY 693 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 693 (943)
.++|...+.||+|+||+||+|.+. +++.||+|++........+.+.+|+++++.++||||+++++++.+++..++||||
T Consensus 9 ~~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e~ 88 (310)
T 3s95_A 9 PSDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITEY 88 (310)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred hhHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEEEEe
Confidence 467899999999999999999976 5789999998776666778899999999999999999999999999999999999
Q ss_pred ccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccCCCCC
Q 002278 694 MVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIPTAMP 773 (943)
Q Consensus 694 ~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~~~~~ 773 (943)
+++|+|.+++.. ....+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++.......
T Consensus 89 ~~~~~L~~~l~~--~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~ 163 (310)
T 3s95_A 89 IKGGTLRGIIKS--MDSQYPWSQRVSFAKDIASGMAYLHSM---NIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKT 163 (310)
T ss_dssp CTTCBHHHHHHH--CCTTSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSTTSEEECTTSCEEECCCTTCEECC----
T ss_pred cCCCcHHHHHHh--ccCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCcCeEEECCCCCEEEeecccceecccccc
Confidence 999999999973 245689999999999999999999999 999999999999999999999999999987644322
Q ss_pred ce-------------eeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhcccccccc
Q 002278 774 HA-------------STFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVME 840 (943)
Q Consensus 774 ~~-------------~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~ 840 (943)
.. .....||+.|+|||++.+..++.++|||||||++|||++|..||............ ........
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~~~~-~~~~~~~~ 242 (310)
T 3s95_A 164 QPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFGL-NVRGFLDR 242 (310)
T ss_dssp ----------------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTTSSB-CHHHHHHH
T ss_pred cccccccccccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHHHhh-hhhccccc
Confidence 11 11346999999999999999999999999999999999999998743211000000 00000000
Q ss_pred ccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCC
Q 002278 841 AVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLP 889 (943)
Q Consensus 841 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~ 889 (943)
...+.++ ..+.+++..||+.||++|||+.++++.|+.+..
T Consensus 243 ~~~~~~~---------~~l~~li~~~l~~dP~~Rps~~~l~~~L~~l~~ 282 (310)
T 3s95_A 243 YCPPNCP---------PSFFPITVRCCDLDPEKRPSFVKLEHWLETLRM 282 (310)
T ss_dssp TCCTTCC---------TTHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred cCCCCCC---------HHHHHHHHHHccCChhhCcCHHHHHHHHHHHHH
Confidence 0111111 356789999999999999999999999987754
No 70
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Probab=100.00 E-value=3.9e-40 Score=365.13 Aligned_cols=248 Identities=17% Similarity=0.186 Sum_probs=211.7
Q ss_pred hhccccceEEeeeceEEEEEEEec-CCceEEEEEecccC---cccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEE
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQY---PHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLF 690 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 690 (943)
.++|+..+.||+|+||.||+|+.+ +++.||+|++.+.. ....+.+.+|+++++.++||||+++++++.+....++|
T Consensus 40 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv 119 (350)
T 1rdq_E 40 LDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMV 119 (350)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred HHHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEE
Confidence 468999999999999999999976 58899999986432 34557788999999999999999999999999999999
Q ss_pred EEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccCC
Q 002278 691 YDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIPT 770 (943)
Q Consensus 691 ~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~~ 770 (943)
|||+++|+|.+++. ....+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++....
T Consensus 120 ~e~~~gg~L~~~l~---~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~DFg~a~~~~~ 193 (350)
T 1rdq_E 120 MEYVAGGEMFSHLR---RIGRFSEPHARFYAAQIVLTFEYLHSL---DLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKG 193 (350)
T ss_dssp EECCTTCBHHHHHH---HHCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECSS
T ss_pred EcCCCCCcHHHHHH---HcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCccceEEECCCCCEEEcccccceeccC
Confidence 99999999999996 345689999999999999999999999 999999999999999999999999999987643
Q ss_pred CCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCcccccCc
Q 002278 771 AMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPEVSVTC 850 (943)
Q Consensus 771 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 850 (943)
. ....+||+.|+|||++.+..++.++|||||||++|||++|+.||.+.........+......++.. +
T Consensus 194 ~----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i~~~~~~~p~~----~---- 261 (350)
T 1rdq_E 194 R----TWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPSH----F---- 261 (350)
T ss_dssp C----BCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTT----C----
T ss_pred C----cccccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCCCHHHHHHHHHcCCCCCCCC----C----
Confidence 3 223469999999999999999999999999999999999999998776555444443332222211 1
Q ss_pred cCHHHHHHHHHHHHHccCCCCCCCCC-----HHHHHHHHh
Q 002278 851 VDLSAVRKTFQLALLCTKRYPSERPT-----MQEVARVLV 885 (943)
Q Consensus 851 ~~~~~~~~l~~l~~~cl~~dP~~RPt-----~~el~~~L~ 885 (943)
...+.+++..||+.||++||+ +.++++|-+
T Consensus 262 -----~~~~~~li~~lL~~dp~~R~~~~~~~~~ei~~h~~ 296 (350)
T 1rdq_E 262 -----SSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKW 296 (350)
T ss_dssp -----CHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHTSGG
T ss_pred -----CHHHHHHHHHHhhcCHHhccCCccCCHHHHHhCcC
Confidence 145678999999999999998 999988765
No 71
>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*
Probab=100.00 E-value=7.6e-40 Score=357.70 Aligned_cols=281 Identities=34% Similarity=0.562 Sum_probs=226.8
Q ss_pred cccccCHHHHHHHhhccccc------eEEeeeceEEEEEEEecCCceEEEEEecccC----cccHHHHHHHHHHHhcCCC
Q 002278 602 DMAIHTFDDIMRSTENLSEK------YIVGYGASSTVYKCALKNSRPIAVKKLYNQY----PHNLREFETELETIGSIRH 671 (943)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~~~------~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l~h 671 (943)
+...++++++..++++|... +.||+|+||.||+|.. +++.||+|++.... ....+.+.+|+++++.++|
T Consensus 11 ~~~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h 89 (307)
T 2nru_A 11 RFHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQH 89 (307)
T ss_dssp CCEECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCC
T ss_pred CCCcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCC
Confidence 34568899999999999888 8999999999999987 47899999986532 2345778999999999999
Q ss_pred CCcceeeeEEecCCcceEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEE
Q 002278 672 RNIVSLHGYALSPYGNLLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILI 751 (943)
Q Consensus 672 ~niv~l~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill 751 (943)
|||+++++++.+.+..++||||+++|+|.+++........+++..++.++.|++.||+|||+. +|+||||||+||++
T Consensus 90 ~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dlkp~Nili 166 (307)
T 2nru_A 90 ENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHEN---HHIHRDIKSANILL 166 (307)
T ss_dssp TTBCCEEEEECSSSSCEEEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEE
T ss_pred CCeEEEEEEEecCCceEEEEEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhcC---CeecCCCCHHHEEE
Confidence 999999999999999999999999999999987544455699999999999999999999999 99999999999999
Q ss_pred CCCCceeecccccccccCCCCCc-eeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccH---HH
Q 002278 752 DENFDAHLSDFGIARCIPTAMPH-ASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNL---HQ 827 (943)
Q Consensus 752 ~~~~~~kl~DFGla~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~---~~ 827 (943)
++++.+||+|||+++........ ......||+.|+|||++.+ .++.++||||||+++|+|++|+.||...... ..
T Consensus 167 ~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~-~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~ 245 (307)
T 2nru_A 167 DEAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLLD 245 (307)
T ss_dssp CTTCCEEECCCTTCEECCSCSSCEECSSCCSCGGGCCHHHHTT-EECTHHHHHHHHHHHHHHHHCCCSBCTTBSSSBTTH
T ss_pred cCCCcEEEeecccccccccccccccccccCCCcCcCChHHhcC-CCCccchhHHHHHHHHHHHHCCCCcccCcchHHHHH
Confidence 99999999999999876543222 2223468999999998865 5889999999999999999999999754321 12
Q ss_pred HHHHhcc-ccccccccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCC
Q 002278 828 LIMSKAD-DNTVMEAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLP 889 (943)
Q Consensus 828 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~ 889 (943)
+...... ...+.+.+++... .........+.+++..||+.||++|||+.+++++|+.+..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~li~~cl~~~p~~Rps~~~l~~~L~~l~~ 306 (307)
T 2nru_A 246 IKEEIEDEEKTIEDYIDKKMN--DADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQLLQEMTA 306 (307)
T ss_dssp HHHHHHTTSCCHHHHSCSSCS--CCCHHHHHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHC-
T ss_pred HHHHhhhhhhhhhhhcccccc--ccchHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhc
Confidence 2221111 1122222222222 1234556788899999999999999999999999988653
No 72
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.2e-41 Score=370.02 Aligned_cols=283 Identities=29% Similarity=0.514 Sum_probs=247.1
Q ss_pred CcccccccCccccCCCCCCCCCCCCCC--cceeEecCCC--CcEEEEEcCCCCCcc--ccCCCcCCCCCCCEEEeeC-Cc
Q 002278 1 MAIKASFSNLANVLLDWDDVHNSDFCS--WRGVFCDNSS--LSVVSLNLSSLNLGG--EISPSIGDLRNLQSIDFQG-NK 73 (943)
Q Consensus 1 ~~~~~~~~~~~~~~~~w~~~~~~~~c~--w~gv~c~~~~--~~v~~L~l~~~~~~~--~~~~~l~~l~~L~~L~Ls~-n~ 73 (943)
++||+++.||. .+++|.. ++|||. |.||.|+..+ ++|+.|+|++|++++ .+|+.++.+++|++|+|++ |+
T Consensus 12 ~~~k~~~~~~~-~l~~W~~--~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~ 88 (313)
T 1ogq_A 12 LQIKKDLGNPT-TLSSWLP--TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN 88 (313)
T ss_dssp HHHHHHTTCCG-GGTTCCT--TSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETT
T ss_pred HHHHHhcCCcc-cccCCCC--CCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCc
Confidence 37899999887 8999975 579998 9999998765 799999999999999 8999999999999999995 99
Q ss_pred ccccCCCCccCCCCCcEEeccCCCcCCccchhccccccceEEEecCcccccCCCcccCCCCCCcEEEEeccccccccchh
Q 002278 74 LTGQIPDEIGNCGSLVHIELSDNSLYGDIPFSISKLKQLEFLNLKNNQLTGPIPSTLTQIPNLKTLDLARNQLTGEIPRL 153 (943)
Q Consensus 74 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 153 (943)
+++.+|..|+++++|++|+|++|++++.+|..|+++++|++|+|++|++++.+|..|..+++|++|+|++|++++.+|..
T Consensus 89 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 168 (313)
T 1ogq_A 89 LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS 168 (313)
T ss_dssp EESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG
T ss_pred ccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999899999
Q ss_pred ccccc-cceeccccCCccCCCCCcccccccccceeeccceecccccCCCCcCCCcccEEEeecccccCcCCCCCCcceEe
Q 002278 154 IYWNE-VLQYLGLRGNALTGMLSPDMCQLTGLWYFDVRGNNLTGTIPDSIGNCTSFEILDISYNQITGEIPYNIGFLQVA 232 (943)
Q Consensus 154 ~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~L~ 232 (943)
+..+. +|++|+|++|++++..|..+..+. |+.|++++|++++..|..|..+++|++|+|++|++++.+|.
T Consensus 169 l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-------- 239 (313)
T 1ogq_A 169 YGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-------- 239 (313)
T ss_dssp GGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG--------
T ss_pred HhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc--------
Confidence 99998 899999999999988888999887 99999999999988899999999999999999998754443
Q ss_pred EEEecCccccccCCccccccCCCcEEecCCCCCCCCCCcccCCCCCcceEEecCCCCCCCCCCCcCCCCcCcEEEcccCc
Q 002278 233 TLSLQGNKLTGKIPEVIGLMQALAVLDLSENELVGPIPPILGNLSYTGKLYLHGNKLTGPIPPELGNMSKLSYLQLQNNQ 312 (943)
Q Consensus 233 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 312 (943)
+..+++|++|+|++|++++.+|..|..+++|+.|+|++|++++.+|.. ..+++|+.|++++|+
T Consensus 240 ----------------~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 240 ----------------VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp ----------------CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred ----------------ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 344566666777777666666666666777777777777776666654 667777777777776
No 73
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=4.4e-40 Score=377.94 Aligned_cols=360 Identities=21% Similarity=0.271 Sum_probs=258.7
Q ss_pred ccCCCcCCCCCCCEEEeeCCcccccCCCCccCCCCCcEEeccCCCcCCccchhccccccceEEEecCcccccCCCcccCC
Q 002278 53 EISPSIGDLRNLQSIDFQGNKLTGQIPDEIGNCGSLVHIELSDNSLYGDIPFSISKLKQLEFLNLKNNQLTGPIPSTLTQ 132 (943)
Q Consensus 53 ~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 132 (943)
..+.+++.+++|++|+|++|+|++ +| .|+.+++|++|+|++|++++ +| ++.+++|++|+|++|++++. + ++.
T Consensus 33 ~~~~~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~ 104 (457)
T 3bz5_A 33 TDTISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D--VTP 104 (457)
T ss_dssp TSEEEHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C--CTT
T ss_pred ccccChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e--cCC
Confidence 444567788888888888888885 45 68888888888888888885 34 78888888888888888864 3 788
Q ss_pred CCCCcEEEEeccccccccchhccccccceeccccCCccCCCCCcccccccccceeeccceecccccCCCCcCCCcccEEE
Q 002278 133 IPNLKTLDLARNQLTGEIPRLIYWNEVLQYLGLRGNALTGMLSPDMCQLTGLWYFDVRGNNLTGTIPDSIGNCTSFEILD 212 (943)
Q Consensus 133 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~ 212 (943)
+++|++|+|++|++++. + +..+++|++|++++|+++++ .++.+++|++|++++|+..+.+ .+..+++|++|+
T Consensus 105 l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ 176 (457)
T 3bz5_A 105 LTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLD 176 (457)
T ss_dssp CTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEE
T ss_pred CCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEE
Confidence 88888888888888753 3 67777788888888887775 2667777777777777444333 366677777777
Q ss_pred eecccccCcCCCCCCcceEeEEEecCccccccCCccccccCCCcEEecCCCCCCCCCCcccCCCCCcceEEecCCCCCCC
Q 002278 213 ISYNQITGEIPYNIGFLQVATLSLQGNKLTGKIPEVIGLMQALAVLDLSENELVGPIPPILGNLSYTGKLYLHGNKLTGP 292 (943)
Q Consensus 213 Ls~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 292 (943)
+++|++++ +| +..+++|+.|++++|.+++. .+..+++|+.|++++|++++
T Consensus 177 ls~n~l~~------------------------l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~- 226 (457)
T 3bz5_A 177 CSFNKITE------------------------LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE- 226 (457)
T ss_dssp CCSSCCCC------------------------CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-
T ss_pred CCCCccce------------------------ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-
Confidence 77777663 12 44566677777777777654 26667777777777777775
Q ss_pred CCCCcCCCCcCcEEEcccCccccccccccCCcccceEEEccccccCCcCcccccCCCcCcEEEeeCCcccCccccccccc
Q 002278 293 IPPELGNMSKLSYLQLQNNQLVGTIPAELGKLEQLFELNLADNNLEGPIPHNISSCTALNQFNVHGNRLSGAIPSSFRNL 372 (943)
Q Consensus 293 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 372 (943)
+| +..+++|++|++++|++++.. +..+++|+.|++++|+ |+.|++++|.+.+.+| +..+
T Consensus 227 ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n~--------------L~~L~l~~n~~~~~~~--~~~l 285 (457)
T 3bz5_A 227 ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTD--------------LLEIDLTHNTQLIYFQ--AEGC 285 (457)
T ss_dssp CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTCC--------------CSCCCCTTCTTCCEEE--CTTC
T ss_pred cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCCC--------------CCEEECCCCccCCccc--cccc
Confidence 34 667777777777777777543 3455667777766653 4456677777666655 4567
Q ss_pred CccceeeccCCcCCCCCCCCCCCCCCccEEecCCCcCCCccCCCcccccccceeecccccccccCCccccCCCccceecc
Q 002278 373 GSLTYLNLSRNNFKGKVPTELGRIINLDTLDLSVNNFSGSVPASIGDLEHLLTLNLSRNHLNGLLPAEFGNLRSIQTIDM 452 (943)
Q Consensus 373 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 452 (943)
++|+.|++++|.+.+.+|. ...+|+.|++++| ++|+.|+|++|++++. .++++++|+.|++
T Consensus 286 ~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l 346 (457)
T 3bz5_A 286 RKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTEL---DVSHNTKLKSLSC 346 (457)
T ss_dssp TTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC---CCTTCTTCSEEEC
T ss_pred ccCCEEECCCCcccceecc---CCCcceEechhhc-------------ccCCEEECCCCccccc---ccccCCcCcEEEC
Confidence 7788888888876666553 2344555555544 5788888888888874 2888888888888
Q ss_pred cCccccccCChhhhcccccceecccCcccCCCCCCcCccccCCcccccCCccccccCCC
Q 002278 453 SFNQLSGSIPAELGQLQNIISLILNNNNLQGGIPDQLSNCFSLSNLNVSYNNLSGIIPP 511 (943)
Q Consensus 453 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~ 511 (943)
++|+|++ ++.|..|++++|+++|. ..+..|..+++++|+|+|.+|.
T Consensus 347 ~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~ 392 (457)
T 3bz5_A 347 VNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSP 392 (457)
T ss_dssp CSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCT
T ss_pred CCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcCh
Confidence 8888885 24677778888888865 3567788889999999998875
No 74
>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7
Probab=100.00 E-value=2.4e-40 Score=361.95 Aligned_cols=248 Identities=24% Similarity=0.316 Sum_probs=211.8
Q ss_pred hhccccceEEeeeceEEEEEEEec-CCceEEEEEecccC---cccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEE
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQY---PHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLF 690 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 690 (943)
.++|+..+.||+|+||.||+|+.+ +++.||+|++.+.. ....+.+.+|+.+++.++||||+++++++.+....++|
T Consensus 5 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lv 84 (318)
T 1fot_A 5 LQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMI 84 (318)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEE
T ss_pred hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEEEE
Confidence 467999999999999999999976 58899999986532 24456788999999999999999999999999999999
Q ss_pred EEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccCC
Q 002278 691 YDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIPT 770 (943)
Q Consensus 691 ~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~~ 770 (943)
|||+++|+|.+++. ....+++..+..++.|++.||+|||++ +|+||||||+||+++.++++||+|||+++....
T Consensus 85 ~e~~~gg~L~~~l~---~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~~~ 158 (318)
T 1fot_A 85 MDYIEGGELFSLLR---KSQRFPNPVAKFYAAEVCLALEYLHSK---DIIYRDLKPENILLDKNGHIKITDFGFAKYVPD 158 (318)
T ss_dssp ECCCCSCBHHHHHH---HTSSCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECTTSCEEECCCSSCEECSS
T ss_pred EeCCCCCCHHHHHH---HcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChheEEEcCCCCEEEeecCcceecCC
Confidence 99999999999997 345689999999999999999999999 999999999999999999999999999987643
Q ss_pred CCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCcccccCc
Q 002278 771 AMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPEVSVTC 850 (943)
Q Consensus 771 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 850 (943)
. ....+||+.|+|||++.+..++.++||||+||++|||++|+.||.+.........+......++. .+
T Consensus 159 ~----~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~p~----~~---- 226 (318)
T 1fot_A 159 V----TYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSNTMKTYEKILNAELRFPP----FF---- 226 (318)
T ss_dssp C----BCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHCCCCCCT----TS----
T ss_pred c----cccccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCC----CC----
Confidence 2 22346999999999999999999999999999999999999999877665554444433222221 11
Q ss_pred cCHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHHHHh
Q 002278 851 VDLSAVRKTFQLALLCTKRYPSERP-----TMQEVARVLV 885 (943)
Q Consensus 851 ~~~~~~~~l~~l~~~cl~~dP~~RP-----t~~el~~~L~ 885 (943)
...+.+++.+|+..||++|| ++.++++|-+
T Consensus 227 -----~~~~~~li~~lL~~dp~~R~~~~~~~~~~i~~hp~ 261 (318)
T 1fot_A 227 -----NEDVKDLLSRLITRDLSQRLGNLQNGTEDVKNHPW 261 (318)
T ss_dssp -----CHHHHHHHHHHTCSCTTTCTTSSTTTTHHHHTSGG
T ss_pred -----CHHHHHHHHHHhccCHHHcCCCcCCCHHHHhcCcc
Confidence 14567899999999999999 8999998755
No 75
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A
Probab=100.00 E-value=2.7e-40 Score=370.14 Aligned_cols=259 Identities=24% Similarity=0.371 Sum_probs=210.2
Q ss_pred hhccccceEEeeeceEEEEEEEec--------CCceEEEEEecccCc-ccHHHHHHHHHHHhcC-CCCCcceeeeEEecC
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK--------NSRPIAVKKLYNQYP-HNLREFETELETIGSI-RHRNIVSLHGYALSP 684 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~--------~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~ 684 (943)
.++|+..+.||+|+||.||+|++. .+..||||++..... ...+.+.+|+++++.+ +||||+++++++.+.
T Consensus 80 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~ 159 (370)
T 2psq_A 80 RDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQD 159 (370)
T ss_dssp GGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECSS
T ss_pred HHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEccC
Confidence 468999999999999999999863 245799999875432 3456789999999999 899999999999999
Q ss_pred CcceEEEEEccCCChhhhccCCCC-------------CccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEE
Q 002278 685 YGNLLFYDYMVNGSLWDLLHGPSK-------------KVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILI 751 (943)
Q Consensus 685 ~~~~lv~e~~~~g~L~~~l~~~~~-------------~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill 751 (943)
+..++||||+++|+|.+++..... ...+++.+++.++.||+.||+|||++ +|+||||||+||++
T Consensus 160 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll 236 (370)
T 2psq_A 160 GPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQ---KCIHRDLAARNVLV 236 (370)
T ss_dssp SSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CeeccccchhhEEE
Confidence 999999999999999999864321 23589999999999999999999999 99999999999999
Q ss_pred CCCCceeecccccccccCCCCCc-eeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHh-CCCCCCCCccHHHHH
Q 002278 752 DENFDAHLSDFGIARCIPTAMPH-ASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILT-GKKAVDNESNLHQLI 829 (943)
Q Consensus 752 ~~~~~~kl~DFGla~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-G~~p~~~~~~~~~~~ 829 (943)
+.++.+||+|||+++........ ......||+.|+|||++.+..++.++|||||||++|||+| |+.||.+........
T Consensus 237 ~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~~~~~~~~~ 316 (370)
T 2psq_A 237 TENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFK 316 (370)
T ss_dssp CTTCCEEECCCSSCEETTCCCTTCTTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHH
T ss_pred CCCCCEEEccccCCcccCcccceecccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHH
Confidence 99999999999999876543221 1222346889999999999999999999999999999999 999998654433222
Q ss_pred HHhccccccccccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcC
Q 002278 830 MSKADDNTVMEAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLL 888 (943)
Q Consensus 830 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~ 888 (943)
...... .+..+.. ....+.+++..||+.||++|||+.|++++|+.+.
T Consensus 317 ~~~~~~-------~~~~~~~-----~~~~l~~li~~~l~~dP~~Rpt~~ell~~L~~il 363 (370)
T 2psq_A 317 LLKEGH-------RMDKPAN-----CTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIL 363 (370)
T ss_dssp HHHTTC-------CCCCCTT-----SCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred HHhcCC-------CCCCCCC-----CCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence 211111 1111111 1246788999999999999999999999998765
No 76
>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*
Probab=100.00 E-value=2.8e-40 Score=363.13 Aligned_cols=256 Identities=24% Similarity=0.311 Sum_probs=205.7
Q ss_pred hhccccceEEeeeceEEEEEEEec-CCceEEEEEecccC-cccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEEEE
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQY-PHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLFYD 692 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 692 (943)
.++|+..+.||+|+||+||+|.++ +++.||+|++.... ....+.+.+|+.+++.++||||+++++++.+++..++|||
T Consensus 6 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e 85 (323)
T 3tki_A 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLE 85 (323)
T ss_dssp TTCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred hhhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEEE
Confidence 468999999999999999999977 68899999986443 2334668899999999999999999999999999999999
Q ss_pred EccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccCCCC
Q 002278 693 YMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIPTAM 772 (943)
Q Consensus 693 ~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~~~~ 772 (943)
|+++|+|.+++. ....+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++.+....
T Consensus 86 ~~~~~~L~~~l~---~~~~~~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~ 159 (323)
T 3tki_A 86 YCSGGELFDRIE---PDIGMPEPDAQRFFHQLMAGVVYLHGI---GITHRDIKPENLLLDERDNLKISDFGLATVFRYNN 159 (323)
T ss_dssp CCTTEEGGGGSB---TTTBCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTCEECEETT
T ss_pred cCCCCcHHHHHh---hcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccccchHHEEEeCCCCEEEEEeeccceeccCC
Confidence 999999999997 345699999999999999999999999 99999999999999999999999999998663221
Q ss_pred C-ceeeeEecccceeCccccccCCC-CCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCcccccCc
Q 002278 773 P-HASTFVLGTIGYIDPEYAHTSRL-NEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPEVSVTC 850 (943)
Q Consensus 773 ~-~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 850 (943)
. .......||+.|+|||++.+..+ +.++||||+||++|||++|+.||...................... ...+
T Consensus 160 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~-~~~~---- 234 (323)
T 3tki_A 160 RERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLNP-WKKI---- 234 (323)
T ss_dssp EECCBCSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSCTTSHHHHHHHTTCTTSTT-GGGS----
T ss_pred cccccCCCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHhcccccCCc-cccC----
Confidence 1 11233569999999999987765 789999999999999999999998654432222221111111110 0111
Q ss_pred cCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhh
Q 002278 851 VDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVS 886 (943)
Q Consensus 851 ~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~ 886 (943)
...+.+++.+||+.||++|||+.|++++-+-
T Consensus 235 -----~~~~~~li~~~L~~dP~~R~t~~eil~h~~~ 265 (323)
T 3tki_A 235 -----DSAPLALLHKILVENPSARITIPDIKKDRWY 265 (323)
T ss_dssp -----CHHHHHHHHHHSCSSTTTSCCHHHHTTCTTT
T ss_pred -----CHHHHHHHHHHccCChhhCcCHHHHhhChhh
Confidence 2456789999999999999999999998654
No 77
>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*
Probab=100.00 E-value=2.7e-40 Score=361.48 Aligned_cols=264 Identities=23% Similarity=0.248 Sum_probs=205.9
Q ss_pred hhccccceEEeeeceEEEEEEEecCCceEEEEEecccC--cccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEEEE
Q 002278 615 TENLSEKYIVGYGASSTVYKCALKNSRPIAVKKLYNQY--PHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLFYD 692 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 692 (943)
.++|+..+.||+|+||+||+|.+++++.||+|++.... ......+.+|++++++++||||+++++++.++...++|||
T Consensus 20 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e 99 (311)
T 3niz_A 20 MEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTLVFE 99 (311)
T ss_dssp SCEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEEEEEE
T ss_pred HhhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEEEEEc
Confidence 47899999999999999999999889999999986443 2234678899999999999999999999999999999999
Q ss_pred EccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccCCCC
Q 002278 693 YMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIPTAM 772 (943)
Q Consensus 693 ~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~~~~ 772 (943)
|+++ +|.+++.. ....+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++......
T Consensus 100 ~~~~-~l~~~~~~--~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~ 173 (311)
T 3niz_A 100 FMEK-DLKKVLDE--NKTGLQDSQIKIYLYQLLRGVAHCHQH---RILHRDLKPQNLLINSDGALKLADFGLARAFGIPV 173 (311)
T ss_dssp CCSE-EHHHHHHT--CTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEETTSCC
T ss_pred CCCC-CHHHHHHh--ccCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCchHhEEECCCCCEEEccCcCceecCCCc
Confidence 9975 78887763 334589999999999999999999999 99999999999999999999999999998765432
Q ss_pred CceeeeEecccceeCcccccc-CCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCccccc---
Q 002278 773 PHASTFVLGTIGYIDPEYAHT-SRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPEVSV--- 848 (943)
Q Consensus 773 ~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 848 (943)
.. .....||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+..............+.......+....
T Consensus 174 ~~-~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 252 (311)
T 3niz_A 174 RS-YTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTDDDQLPKIFSILGTPNPREWPQVQELPL 252 (311)
T ss_dssp C----CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSTTTHHHHHHHHHCCCCTTTSGGGTTSHH
T ss_pred cc-ccCCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHCCCChHHhhhhhccch
Confidence 22 233458999999999876 5689999999999999999999999986554443333222111111110010000
Q ss_pred ---------CccCH-----HHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 002278 849 ---------TCVDL-----SAVRKTFQLALLCTKRYPSERPTMQEVARVLV 885 (943)
Q Consensus 849 ---------~~~~~-----~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~ 885 (943)
..... .....+.+++..|++.||++|||+.|+++|-+
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~ 303 (311)
T 3niz_A 253 WKQRTFQVFEKKPWSSIIPGFCQEGIDLLSNMLCFDPNKRISARDAMNHPY 303 (311)
T ss_dssp HHSCCCCCCCCCCHHHHSTTCCHHHHHHHHHHSCSCTTTSCCHHHHHTSGG
T ss_pred hhhcccccccCCcHHHhCcccCHHHHHHHHHHcCCChhHCCCHHHHhcCcc
Confidence 00000 11246778999999999999999999999754
No 78
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A
Probab=100.00 E-value=2.8e-40 Score=356.66 Aligned_cols=257 Identities=21% Similarity=0.348 Sum_probs=212.1
Q ss_pred HhhccccceEEeeeceEEEEEEEecCCceEEEEEecccCcccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEEEEE
Q 002278 614 STENLSEKYIVGYGASSTVYKCALKNSRPIAVKKLYNQYPHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLFYDY 693 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 693 (943)
..++|+..+.||+|+||+||+|.++++..||+|++... ....+++.+|+++++.++||||+++++++.+....++||||
T Consensus 22 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~ 100 (283)
T 3gen_A 22 DPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEG-SMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEY 100 (283)
T ss_dssp CGGGEEEEEECC---CEEEEEEEETTTEEEEEEEECTT-SBCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEECC
T ss_pred CHHHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCC-CCCHHHHHHHHHHHhcCCCCCEeeEEEEEecCCCeEEEEec
Confidence 45789999999999999999999998889999998754 33457899999999999999999999999999999999999
Q ss_pred ccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccCCCCC
Q 002278 694 MVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIPTAMP 773 (943)
Q Consensus 694 ~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~~~~~ 773 (943)
+++|+|.+++.. ....+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++.......
T Consensus 101 ~~~~~L~~~l~~--~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~ 175 (283)
T 3gen_A 101 MANGCLLNYLRE--MRHRFQTQQLLEMCKDVCEAMEYLESK---QFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEY 175 (283)
T ss_dssp CTTCBHHHHHHC--GGGCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCSGGGEEECTTSCEEECSTTGGGGBCCHHH
T ss_pred cCCCcHHHHHHH--hccCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCccceEEEcCCCCEEEcccccccccccccc
Confidence 999999999973 245699999999999999999999999 999999999999999999999999999987644322
Q ss_pred ceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHh-CCCCCCCCccHHHHHHHhccccccccccCcccccCccC
Q 002278 774 HASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILT-GKKAVDNESNLHQLIMSKADDNTVMEAVDPEVSVTCVD 852 (943)
Q Consensus 774 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 852 (943)
.......+|+.|+|||++.+..++.++||||+|+++|||+| |+.||.................... +..
T Consensus 176 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~~~~~~~~~~~~~~~~~----~~~------ 245 (283)
T 3gen_A 176 TSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNSETAEHIAQGLRLYR----PHL------ 245 (283)
T ss_dssp HSTTSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTCCCCC----CTT------
T ss_pred ccccCCccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccccChhHHHHHHhcccCCCC----CCc------
Confidence 22222346788999999999999999999999999999998 9999987665444333332211111 111
Q ss_pred HHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcC
Q 002278 853 LSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLL 888 (943)
Q Consensus 853 ~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~ 888 (943)
....+.+++..||+.||++|||+.+++++|+.+.
T Consensus 246 --~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~~~ 279 (283)
T 3gen_A 246 --ASEKVYTIMYSCWHEKADERPTFKILLSNILDVM 279 (283)
T ss_dssp --CCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHh
Confidence 1146778999999999999999999999998764
No 79
>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*
Probab=100.00 E-value=8.5e-41 Score=369.14 Aligned_cols=254 Identities=20% Similarity=0.290 Sum_probs=210.0
Q ss_pred HHHhhccccceEEeeeceEEEEEEEec-CCceEEEEEecccC---cccHHHHHHHHHHHhcC-CCCCcceeeeEEecCCc
Q 002278 612 MRSTENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQY---PHNLREFETELETIGSI-RHRNIVSLHGYALSPYG 686 (943)
Q Consensus 612 ~~~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~ 686 (943)
....++|...+.||+|+||.||+|+.+ +++.||+|++.+.. ....+.+..|.++++.+ +||||+++++++.+...
T Consensus 13 ~~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~~ 92 (345)
T 1xjd_A 13 KLKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKEN 92 (345)
T ss_dssp ---CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSE
T ss_pred CCChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCE
Confidence 345678999999999999999999986 57889999986532 34456788899998876 89999999999999999
Q ss_pred ceEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeeccccccc
Q 002278 687 NLLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIAR 766 (943)
Q Consensus 687 ~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~ 766 (943)
.++||||+++|+|.+++. ....+++..+..++.|++.||+|||++ +|+||||||+||+++.++++||+|||+++
T Consensus 93 ~~lv~E~~~gg~L~~~l~---~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~vkL~DFG~a~ 166 (345)
T 1xjd_A 93 LFFVMEYLNGGDLMYHIQ---SCHKFDLSRATFYAAEIILGLQFLHSK---GIVYRDLKLDNILLDKDGHIKIADFGMCK 166 (345)
T ss_dssp EEEEEECCTTCBHHHHHH---HHSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCB
T ss_pred EEEEEeCCCCCcHHHHHH---HcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCChhhEEECCCCCEEEeEChhhh
Confidence 999999999999999996 345699999999999999999999999 99999999999999999999999999998
Q ss_pred ccCCCCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCccc
Q 002278 767 CIPTAMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPEV 846 (943)
Q Consensus 767 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 846 (943)
....... .....+||+.|+|||++.+..++.++||||+||++|||++|+.||.+......+..+......++.. +
T Consensus 167 ~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i~~~~~~~p~~----~ 241 (345)
T 1xjd_A 167 ENMLGDA-KTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDEEELFHSIRMDNPFYPRW----L 241 (345)
T ss_dssp CCCCTTC-CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTT----S
T ss_pred hcccCCC-cccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHhCCCCCCcc----c
Confidence 6533222 2334569999999999999999999999999999999999999998776554444333322222111 1
Q ss_pred ccCccCHHHHHHHHHHHHHccCCCCCCCCCHH-HHHHHHh
Q 002278 847 SVTCVDLSAVRKTFQLALLCTKRYPSERPTMQ-EVARVLV 885 (943)
Q Consensus 847 ~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~-el~~~L~ 885 (943)
...+.+++.+|++.||++||++. ++.+|-+
T Consensus 242 ---------s~~~~~li~~lL~~dp~~R~~~~~~i~~hp~ 272 (345)
T 1xjd_A 242 ---------EKEAKDLLVKLFVREPEKRLGVRGDIRQHPL 272 (345)
T ss_dssp ---------CHHHHHHHHHHSCSSGGGSBTTBSCGGGSGG
T ss_pred ---------CHHHHHHHHHHhcCCHhHcCCChHHHHcCcc
Confidence 14567899999999999999997 7776543
No 80
>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*
Probab=100.00 E-value=2.1e-40 Score=358.78 Aligned_cols=260 Identities=22% Similarity=0.296 Sum_probs=207.7
Q ss_pred hhccccceEEeeeceEEEEEEEecC-C-------ceEEEEEecccCcccHHHHHHHHHHHhcCCCCCcceeeeEEecCCc
Q 002278 615 TENLSEKYIVGYGASSTVYKCALKN-S-------RPIAVKKLYNQYPHNLREFETELETIGSIRHRNIVSLHGYALSPYG 686 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~~-~-------~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 686 (943)
.++|...+.||+|+||+||+|.++. + ..||+|++........+.+.+|+++++.++||||+++++++.+++.
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 86 (289)
T 4fvq_A 7 NEDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCVCGDE 86 (289)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTTBCCEEEEECCTTC
T ss_pred hhHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeCCC
Confidence 4688999999999999999998763 2 4699999977666677889999999999999999999999999999
Q ss_pred ceEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCc--------ee
Q 002278 687 NLLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFD--------AH 758 (943)
Q Consensus 687 ~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~--------~k 758 (943)
.++||||+++|+|.+++.. ....+++..+..++.|++.||+|||++ +|+||||||+||+++.++. +|
T Consensus 87 ~~lv~e~~~~~~L~~~l~~--~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~~~~~k 161 (289)
T 4fvq_A 87 NILVQEFVKFGSLDTYLKK--NKNCINILWKLEVAKQLAAAMHFLEEN---TLIHGNVCAKNILLIREEDRKTGNPPFIK 161 (289)
T ss_dssp CEEEEECCTTCBHHHHHHH--TGGGCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEEECCBGGGTBCCEEE
T ss_pred CEEEEECCCCCCHHHHHHh--CCCCCCHHHHHHHHHHHHHHHHHHhhC---CeECCCcCcceEEEecCCcccccccceee
Confidence 9999999999999999973 233489999999999999999999999 9999999999999998887 99
Q ss_pred ecccccccccCCCCCceeeeEecccceeCcccccc-CCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccc
Q 002278 759 LSDFGIARCIPTAMPHASTFVLGTIGYIDPEYAHT-SRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNT 837 (943)
Q Consensus 759 l~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~ 837 (943)
|+|||++...... ....||+.|+|||++.+ ..++.++|||||||++|||++|..|+..................
T Consensus 162 l~Dfg~~~~~~~~-----~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~~~~~~~~~~~ 236 (289)
T 4fvq_A 162 LSDPGISITVLPK-----DILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSALDSQRKLQFYEDRHQ 236 (289)
T ss_dssp ECCCCSCTTTSCH-----HHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTTTSCHHHHHHHHHTTCC
T ss_pred eccCcccccccCc-----cccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCccccchHHHHHHhhccCC
Confidence 9999999755322 22348899999999987 67999999999999999999965555443333333333222222
Q ss_pred cccccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCCCCCCccCc
Q 002278 838 VMEAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLPAPPAKLSL 897 (943)
Q Consensus 838 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~~~~~~~~~ 897 (943)
...... ..+.+++..||+.||++|||+.+++++|+.+..+...+...
T Consensus 237 ~~~~~~-------------~~l~~li~~~l~~dp~~Rps~~~ll~~l~~l~~p~~~~~~~ 283 (289)
T 4fvq_A 237 LPAPKA-------------AELANLINNCMDYEPDHRPSFRAIIRDLNSLFTPDLVPRGS 283 (289)
T ss_dssp CCCCSS-------------CTTHHHHHHHSCSSGGGSCCHHHHHHHHHTCC---------
T ss_pred CCCCCC-------------HHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcCCCCCCCCc
Confidence 222211 23568999999999999999999999999998765554433
No 81
>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A
Probab=100.00 E-value=3.1e-40 Score=357.18 Aligned_cols=263 Identities=22% Similarity=0.271 Sum_probs=206.0
Q ss_pred hccccceEEeeeceEEEEEEEecCCceEEEEEecccC--cccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEEEEE
Q 002278 616 ENLSEKYIVGYGASSTVYKCALKNSRPIAVKKLYNQY--PHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLFYDY 693 (943)
Q Consensus 616 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 693 (943)
++|+..+.||+|+||+||+|....++.||+|++.... ....+.+.+|+++++.++||||+++++++.+.+..++||||
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 81 (288)
T 1ob3_A 2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH 81 (288)
T ss_dssp CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred ccchhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEEEe
Confidence 5788999999999999999999889999999986443 22346788999999999999999999999999999999999
Q ss_pred ccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccCCCCC
Q 002278 694 MVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIPTAMP 773 (943)
Q Consensus 694 ~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~~~~~ 773 (943)
+++ +|.+++.. ....+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++.......
T Consensus 82 ~~~-~l~~~~~~--~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~ 155 (288)
T 1ob3_A 82 LDQ-DLKKLLDV--CEGGLESVTAKSFLLQLLNGIAYCHDR---RVLHRDLKPQNLLINREGELKIADFGLARAFGIPVR 155 (288)
T ss_dssp CSE-EHHHHHHT--STTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC---
T ss_pred cCC-CHHHHHHh--cccCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCCEEEeECccccccCcccc
Confidence 975 89888863 235689999999999999999999999 999999999999999999999999999987653322
Q ss_pred ceeeeEecccceeCcccccc-CCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccc----------c
Q 002278 774 HASTFVLGTIGYIDPEYAHT-SRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEA----------V 842 (943)
Q Consensus 774 ~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~----------~ 842 (943)
......||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+..............+..... .
T Consensus 156 -~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (288)
T 1ob3_A 156 -KYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKY 234 (288)
T ss_dssp -------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTTC
T ss_pred -ccccccccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHCCCChhhchhhhccccc
Confidence 2233468999999999876 458999999999999999999999998776655544433211111100 0
Q ss_pred CcccccC------ccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 002278 843 DPEVSVT------CVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLV 885 (943)
Q Consensus 843 ~~~~~~~------~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~ 885 (943)
++.+... .........+.+++.+|++.||++|||+.|+++|-+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~ 283 (288)
T 1ob3_A 235 DPNFTVYEPLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALEHAY 283 (288)
T ss_dssp CTTCCCCCCCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHTSGG
T ss_pred ccccccccCccHHHHhhhcCHHHHHHHHHHcCCCcccCCCHHHHhcCcc
Confidence 1111000 000012246779999999999999999999998754
No 82
>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}
Probab=100.00 E-value=1e-39 Score=355.01 Aligned_cols=252 Identities=19% Similarity=0.262 Sum_probs=200.8
Q ss_pred hhccccceEEeeeceEEEEEEEec-CCceEEEEEecccCc--------------------------ccHHHHHHHHHHHh
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYP--------------------------HNLREFETELETIG 667 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~--------------------------~~~~~~~~E~~~l~ 667 (943)
.++|+..+.||+|+||.||+|.+. +++.||||++..... ...+.+.+|+++++
T Consensus 12 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~ 91 (298)
T 2zv2_A 12 LNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILK 91 (298)
T ss_dssp ETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHH
T ss_pred ecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHH
Confidence 468999999999999999999976 578899999864421 11346889999999
Q ss_pred cCCCCCcceeeeEEec--CCcceEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCC
Q 002278 668 SIRHRNIVSLHGYALS--PYGNLLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVK 745 (943)
Q Consensus 668 ~l~h~niv~l~~~~~~--~~~~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk 745 (943)
.++||||+++++++.+ ....++||||+++|+|.+++. ...+++.++..++.|++.||+|||+. +|+|||||
T Consensus 92 ~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~----~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlk 164 (298)
T 2zv2_A 92 KLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPT----LKPLSEDQARFYFQDLIKGIEYLHYQ---KIIHRDIK 164 (298)
T ss_dssp TCCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSC----SSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCC
T ss_pred hCCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhh----cCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCC
Confidence 9999999999999987 457899999999999988763 35699999999999999999999999 99999999
Q ss_pred CccEEECCCCceeecccccccccCCCCCceeeeEecccceeCccccccCC---CCCcchhhhHHHHHHHHHhCCCCCCCC
Q 002278 746 SSNILIDENFDAHLSDFGIARCIPTAMPHASTFVLGTIGYIDPEYAHTSR---LNEKSDVYSFGIVLLEILTGKKAVDNE 822 (943)
Q Consensus 746 p~Nill~~~~~~kl~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---~~~~~DvwSlGvil~elltG~~p~~~~ 822 (943)
|+||+++.++.+||+|||+++........ .....||+.|+|||++.+.. ++.++|||||||++|||++|+.||...
T Consensus 165 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~ 243 (298)
T 2zv2_A 165 PSNLLVGEDGHIKIADFGVSNEFKGSDAL-LSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFMDE 243 (298)
T ss_dssp GGGEEECTTSCEEECCCTTCEECSSSSCE-ECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred HHHEEECCCCCEEEecCCCcccccccccc-ccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCc
Confidence 99999999999999999999877544322 23346999999999998765 378899999999999999999999876
Q ss_pred ccHHHHHHHhccccccccccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 002278 823 SNLHQLIMSKADDNTVMEAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLV 885 (943)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~ 885 (943)
.................. .+.+ ...+.+++.+||+.||++|||+.|+++|-+
T Consensus 244 ~~~~~~~~~~~~~~~~~~--~~~~---------~~~l~~li~~~l~~dp~~R~s~~e~l~hp~ 295 (298)
T 2zv2_A 244 RIMCLHSKIKSQALEFPD--QPDI---------AEDLKDLITRMLDKNPESRIVVPEIKLHPW 295 (298)
T ss_dssp SHHHHHHHHHHCCCCCCS--SSCC---------CHHHHHHHHHHTCSCTTTSCCHHHHTTCHH
T ss_pred cHHHHHHHHhcccCCCCC--cccc---------CHHHHHHHHHHhhcChhhCCCHHHHhcCcc
Confidence 543332222221111110 1111 246778999999999999999999988754
No 83
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*
Probab=100.00 E-value=1.5e-40 Score=365.50 Aligned_cols=264 Identities=25% Similarity=0.325 Sum_probs=208.4
Q ss_pred HhhccccceEEeeeceEEEEEEEecCCceEEEEEecccCcccHHHHHHHHHHHhcCCCCCcceeeeEEecCCc----ceE
Q 002278 614 STENLSEKYIVGYGASSTVYKCALKNSRPIAVKKLYNQYPHNLREFETELETIGSIRHRNIVSLHGYALSPYG----NLL 689 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~----~~l 689 (943)
..++|+..+.||+|+||+||+|++. ++.||||++... ........+|+.++++++||||+++++++..... .++
T Consensus 22 ~~~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~l 99 (322)
T 3soc_A 22 QSMPLQLLEVKARGRFGCVWKAQLL-NEYVAVKIFPIQ-DKQSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLWL 99 (322)
T ss_dssp TTEEEEEEEEEECSTTCEEEEEEET-TEEEEEEEECGG-GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEE
T ss_pred chhhchhhheecccCceEEEEEEEC-CCEEEEEEeecC-chHHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceEEE
Confidence 4568999999999999999999876 789999998654 2334456678999999999999999999987554 599
Q ss_pred EEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhC-------CCCCeEecCCCCccEEECCCCceeeccc
Q 002278 690 FYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHD-------CNPRIIHRDVKSSNILIDENFDAHLSDF 762 (943)
Q Consensus 690 v~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~-------~~~~ivH~Dlkp~Nill~~~~~~kl~DF 762 (943)
||||+++|+|.+++.. ..+++..+..++.|++.||+|||+. +.++|+||||||+||+++.++.+||+||
T Consensus 100 v~e~~~~g~L~~~l~~----~~~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~~kL~DF 175 (322)
T 3soc_A 100 ITAFHEKGSLSDFLKA----NVVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADF 175 (322)
T ss_dssp EEECCTTCBHHHHHHH----CCBCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECEEECSCCSGGGEEECTTCCEEECCC
T ss_pred EEecCCCCCHHHHHHh----cCCCHHHHHHHHHHHHHHHHHHHhhccccccccCCCEEeCCCChHhEEECCCCeEEEccC
Confidence 9999999999999962 4589999999999999999999975 1348999999999999999999999999
Q ss_pred ccccccCCCCCc-eeeeEecccceeCccccccC-----CCCCcchhhhHHHHHHHHHhCCCCCCCCcc------------
Q 002278 763 GIARCIPTAMPH-ASTFVLGTIGYIDPEYAHTS-----RLNEKSDVYSFGIVLLEILTGKKAVDNESN------------ 824 (943)
Q Consensus 763 Gla~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~-----~~~~~~DvwSlGvil~elltG~~p~~~~~~------------ 824 (943)
|+++........ ......||+.|+|||++.+. .++.++|||||||++|||+||+.||.+...
T Consensus 176 g~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~~~~~ 255 (322)
T 3soc_A 176 GLALKFEAGKSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEIGQ 255 (322)
T ss_dssp TTCEEECTTSCCCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCCCCTTHHHHCS
T ss_pred CcccccccccCccccccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCCcchhccchhhhhcc
Confidence 999876543322 22234699999999998873 456789999999999999999999975321
Q ss_pred ---HHHHHHHhccccccccccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcC
Q 002278 825 ---LHQLIMSKADDNTVMEAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLL 888 (943)
Q Consensus 825 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~ 888 (943)
...+..... .....+.+............+.+++.+||+.||++|||+.++++.|+.+.
T Consensus 256 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~l~ 317 (322)
T 3soc_A 256 HPSLEDMQEVVV-----HKKKRPVLRDYWQKHAGMAMLCETIEECWDHDAEARLSAGCVGERITQMQ 317 (322)
T ss_dssp SCCHHHHHHHHT-----TSCCCCCCCGGGGSSHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred CCchhhhhhhhh-----cccCCCCccccccccchHHHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence 111111111 11122222222223345667899999999999999999999999998764
No 84
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=2.6e-39 Score=374.73 Aligned_cols=345 Identities=28% Similarity=0.413 Sum_probs=190.0
Q ss_pred CCCCCEEEeeCCcccccCCCCccCCCCCcEEeccCCCcCCccchhccccccceEEEecCcccccCCCcccCCCCCCcEEE
Q 002278 61 LRNLQSIDFQGNKLTGQIPDEIGNCGSLVHIELSDNSLYGDIPFSISKLKQLEFLNLKNNQLTGPIPSTLTQIPNLKTLD 140 (943)
Q Consensus 61 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 140 (943)
+++|+.|++++|+++ .+|. +..+++|++|+|++|.+++..| ++++++|++|++++|++++..+ +.++++|++|+
T Consensus 45 l~~l~~L~l~~~~i~-~l~~-~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 118 (466)
T 1o6v_A 45 LDQVTTLQADRLGIK-SIDG-VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 118 (466)
T ss_dssp HHTCCEEECCSSCCC-CCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred hccccEEecCCCCCc-cCcc-hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEE
Confidence 445555555555555 3332 5555556666666555553322 5555555555555555553332 55555555555
Q ss_pred EeccccccccchhccccccceeccccCCccCCCCCcccccccccceeeccceecccccCCCCcCCCcccEEEeecccccC
Q 002278 141 LARNQLTGEIPRLIYWNEVLQYLGLRGNALTGMLSPDMCQLTGLWYFDVRGNNLTGTIPDSIGNCTSFEILDISYNQITG 220 (943)
Q Consensus 141 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~ 220 (943)
|++|++++..+ +..+++|++|++++|.++++. .+..+++|++|+++ |.+.+.. .+.++++|++|++++|++++
T Consensus 119 L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l~~ 191 (466)
T 1o6v_A 119 LFNNQITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKVSD 191 (466)
T ss_dssp CCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCG--GGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCCCC
T ss_pred CCCCCCCCChH--HcCCCCCCEEECCCCccCCCh--hhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcCCC
Confidence 55555553322 455555555555555555442 35555666666664 3443322 25666666666666666542
Q ss_pred cCCCCCCcceEeEEEecCccccccCCccccccCCCcEEecCCCCCCCCCCcccCCCCCcceEEecCCCCCCCCCCCcCCC
Q 002278 221 EIPYNIGFLQVATLSLQGNKLTGKIPEVIGLMQALAVLDLSENELVGPIPPILGNLSYTGKLYLHGNKLTGPIPPELGNM 300 (943)
Q Consensus 221 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 300 (943)
. ..+..+++|+.|++++|.+.+..| ++.+++|+.|++++|.+++. ..+..+
T Consensus 192 ~-------------------------~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l 242 (466)
T 1o6v_A 192 I-------------------------SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASL 242 (466)
T ss_dssp C-------------------------GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGC
T ss_pred C-------------------------hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcC
Confidence 1 123445555555555555554333 44455555555555555532 245555
Q ss_pred CcCcEEEcccCccccccccccCCcccceEEEccccccCCcCcccccCCCcCcEEEeeCCcccCcccccccccCccceeec
Q 002278 301 SKLSYLQLQNNQLVGTIPAELGKLEQLFELNLADNNLEGPIPHNISSCTALNQFNVHGNRLSGAIPSSFRNLGSLTYLNL 380 (943)
Q Consensus 301 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 380 (943)
++|++|++++|.+.+..+ +..+++|++|++++|++++..+ +..+++|+.|++++|++++..+ +..+++|+.|+|
T Consensus 243 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L 316 (466)
T 1o6v_A 243 TNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTL 316 (466)
T ss_dssp TTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEEC
T ss_pred CCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEEC
Confidence 556666666666554333 5555666666666666654433 5556666666666666654433 555666666666
Q ss_pred cCCcCCCCCCCCCCCCCCccEEecCCCcCCCccCCCcccccccceeecccccccccCCccccCCCccceecccCccccc
Q 002278 381 SRNNFKGKVPTELGRIINLDTLDLSVNNFSGSVPASIGDLEHLLTLNLSRNHLNGLLPAEFGNLRSIQTIDMSFNQLSG 459 (943)
Q Consensus 381 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 459 (943)
++|++++..| +..+++|+.|++++|.+++. ..+..+++|+.|++++|++++..| +..+++|+.|++++|++++
T Consensus 317 ~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 317 YFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred cCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 6666664433 55566666666666666643 245666666666666666665554 5666666666666666664
No 85
>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*
Probab=100.00 E-value=1e-39 Score=350.95 Aligned_cols=254 Identities=20% Similarity=0.235 Sum_probs=213.6
Q ss_pred HhhccccceEEeeeceEEEEEEEecC-CceEEEEEecccCcccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEEEE
Q 002278 614 STENLSEKYIVGYGASSTVYKCALKN-SRPIAVKKLYNQYPHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLFYD 692 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 692 (943)
..++|+..+.||+|+||.||+|.++. +..||+|++........+.+.+|+++++.++||||+++++++.+....++|||
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 86 (277)
T 3f3z_A 7 INQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVME 86 (277)
T ss_dssp HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred hhhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEEEe
Confidence 35689999999999999999999774 67899999987666677889999999999999999999999999999999999
Q ss_pred EccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEE---CCCCceeecccccccccC
Q 002278 693 YMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILI---DENFDAHLSDFGIARCIP 769 (943)
Q Consensus 693 ~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill---~~~~~~kl~DFGla~~~~ 769 (943)
|+++++|.+++. ....+++..+..++.|++.||+|||++ +|+||||||+||++ +.++.+||+|||++....
T Consensus 87 ~~~~~~L~~~~~---~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~~ 160 (277)
T 3f3z_A 87 LCTGGELFERVV---HKRVFRESDAARIMKDVLSAVAYCHKL---NVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFK 160 (277)
T ss_dssp CCCSCBHHHHHH---HHCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSTTCCEEECCCTTCEECC
T ss_pred ccCCCcHHHHHH---HcCCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHEEEecCCCCCcEEEEecccceecc
Confidence 999999999886 345689999999999999999999999 99999999999999 788999999999998765
Q ss_pred CCCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCcccccC
Q 002278 770 TAMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPEVSVT 849 (943)
Q Consensus 770 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (943)
.... .....||+.|+|||++.+. ++.++||||+|+++|||++|+.||........................+.+
T Consensus 161 ~~~~--~~~~~~t~~y~aPE~~~~~-~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 234 (277)
T 3f3z_A 161 PGKM--MRTKVGTPYYVSPQVLEGL-YGPECDEWSAGVMMYVLLCGYPPFSAPTDSEVMLKIREGTFTFPEKDWLNV--- 234 (277)
T ss_dssp TTSC--BCCCCSCTTTCCHHHHTTC-BCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCHHHHTTS---
T ss_pred Cccc--hhccCCCCCccChHHhccc-CCchhhehhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCCchhhhcC---
Confidence 4332 2234599999999998764 899999999999999999999999877665554444333332222211111
Q ss_pred ccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 002278 850 CVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLV 885 (943)
Q Consensus 850 ~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~ 885 (943)
...+.+++..|++.||++|||+.+++++-+
T Consensus 235 ------~~~~~~li~~~l~~dp~~R~s~~~~l~h~~ 264 (277)
T 3f3z_A 235 ------SPQAESLIRRLLTKSPKQRITSLQALEHEW 264 (277)
T ss_dssp ------CHHHHHHHHHHTCSSTTTSCCHHHHTTSHH
T ss_pred ------CHHHHHHHHHHccCChhhCcCHHHHhcCHH
Confidence 246778999999999999999999988644
No 86
>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*
Probab=100.00 E-value=4.2e-40 Score=364.83 Aligned_cols=252 Identities=18% Similarity=0.237 Sum_probs=210.2
Q ss_pred HhhccccceEEeeeceEEEEEEEecC-CceEEEEEecccC---cccHHHHHHHHHHHhcC-CCCCcceeeeEEecCCcce
Q 002278 614 STENLSEKYIVGYGASSTVYKCALKN-SRPIAVKKLYNQY---PHNLREFETELETIGSI-RHRNIVSLHGYALSPYGNL 688 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~ 688 (943)
..++|+..+.||+|+||.||+|+.+. ++.||+|++.+.. ....+.+..|.++++.+ +||+|+++++++.+.+..+
T Consensus 18 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~ 97 (353)
T 2i0e_A 18 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY 97 (353)
T ss_dssp -CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEEE
T ss_pred chHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEE
Confidence 45789999999999999999999874 6889999986532 34556788999999988 7999999999999999999
Q ss_pred EEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeeccccccccc
Q 002278 689 LFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCI 768 (943)
Q Consensus 689 lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~ 768 (943)
+||||+++|+|.+++. ....+++..+..++.|++.||+|||++ +|+||||||+||+++.++++||+|||+++..
T Consensus 98 lv~E~~~gg~L~~~l~---~~~~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~vkL~DFG~a~~~ 171 (353)
T 2i0e_A 98 FVMEYVNGGDLMYHIQ---QVGRFKEPHAVFYAAEIAIGLFFLQSK---GIIYRDLKLDNVMLDSEGHIKIADFGMCKEN 171 (353)
T ss_dssp EEEECCCSCBHHHHHH---HHSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCC
T ss_pred EEEeCCCCCcHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHC---CEEeccCCHHHEEEcCCCcEEEEeCCccccc
Confidence 9999999999999996 345699999999999999999999999 9999999999999999999999999999864
Q ss_pred CCCCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCccccc
Q 002278 769 PTAMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPEVSV 848 (943)
Q Consensus 769 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 848 (943)
..... .....+||+.|+|||++.+..++.++|||||||++|||++|+.||.+.........+......++. .+
T Consensus 172 ~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~~~~~i~~~~~~~p~----~~-- 244 (353)
T 2i0e_A 172 IWDGV-TTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIMEHNVAYPK----SM-- 244 (353)
T ss_dssp CCTTC-CBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCT----TS--
T ss_pred ccCCc-ccccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCCCCCHHHHHHHHHhCCCCCCC----CC--
Confidence 33222 233456999999999999999999999999999999999999999877655444443333222221 11
Q ss_pred CccCHHHHHHHHHHHHHccCCCCCCCCC-----HHHHHHHHh
Q 002278 849 TCVDLSAVRKTFQLALLCTKRYPSERPT-----MQEVARVLV 885 (943)
Q Consensus 849 ~~~~~~~~~~l~~l~~~cl~~dP~~RPt-----~~el~~~L~ 885 (943)
...+.+++..|++.||++||+ +.++.+|-+
T Consensus 245 -------s~~~~~li~~lL~~dP~~R~~~~~~~~~~i~~h~~ 279 (353)
T 2i0e_A 245 -------SKEAVAICKGLMTKHPGKRLGCGPEGERDIKEHAF 279 (353)
T ss_dssp -------CHHHHHHHHHHTCSCTTSCTTCSTTHHHHHHTSGG
T ss_pred -------CHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhcCcc
Confidence 145678999999999999994 688888754
No 87
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain, alternative splicing, ATP-binding, disease MU kinase, metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Probab=100.00 E-value=9.3e-40 Score=356.36 Aligned_cols=263 Identities=27% Similarity=0.414 Sum_probs=207.2
Q ss_pred HhhccccceEEeeeceEEEEEEEecCCceEEEEEecccC--cccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEEE
Q 002278 614 STENLSEKYIVGYGASSTVYKCALKNSRPIAVKKLYNQY--PHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLFY 691 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 691 (943)
..++|...+.||+|+||+||+|.+.. .+|+|.++... ....+.+.+|++++++++||||+++++++. .+..++||
T Consensus 34 ~~~~~~~~~~lG~G~~g~Vy~~~~~~--~~avk~~k~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~-~~~~~lv~ 110 (307)
T 3lb7_A 34 EASEVMLSTRIGSGSFGTVYKGKWHG--DVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMT-KDNLAIVT 110 (307)
T ss_dssp CTTSCCEEEEEEECSSCEEEEEESSS--EEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEE
T ss_pred cccceEEEeEecCCCCeEEEEEEECC--EEEEEEEecCCCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEc-cCcEEEEE
Confidence 34688999999999999999998753 58888876433 334567899999999999999999999875 45689999
Q ss_pred EEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccCCC
Q 002278 692 DYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIPTA 771 (943)
Q Consensus 692 e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~~~ 771 (943)
||+++|+|.+++.. ....+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++.....
T Consensus 111 e~~~~~~L~~~l~~--~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~DFg~a~~~~~~ 185 (307)
T 3lb7_A 111 QWCEGSSLYKHLHV--QETKFQMFQLIDIARQTAQGMDYLHAK---NIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRW 185 (307)
T ss_dssp ECCSSCBHHHHHHT--SCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCSSSEEECTTSCEEECCCCSSCC----
T ss_pred ecCCCCcHHHHHHh--cccCCCHHHHHHHHHHHHHHHHHHHhC---CEeeCCCChhhEEEcCCCCEEEccCCCceecccc
Confidence 99999999999963 345699999999999999999999999 9999999999999999999999999999865431
Q ss_pred -CCceeeeEecccceeCccccc---cCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCcccc
Q 002278 772 -MPHASTFVLGTIGYIDPEYAH---TSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPEVS 847 (943)
Q Consensus 772 -~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 847 (943)
.........||+.|+|||++. +..++.++|||||||++|||++|+.||..................... . +.+.
T Consensus 186 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~-~-~~~~ 263 (307)
T 3lb7_A 186 SGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIFMVGRGYASPD-L-SKLY 263 (307)
T ss_dssp --------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHHTCCCCC-S-TTSC
T ss_pred cccccccCCCCCcceECcceeeccCCCCCCchhhHHHHHHHHHHHHhCCCCCccCCcHHHHHHHHhcCCCCcc-h-hhhh
Confidence 122223446999999999886 567889999999999999999999999876665554433322211111 0 0111
Q ss_pred cCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCCCC
Q 002278 848 VTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLPAP 891 (943)
Q Consensus 848 ~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~~~ 891 (943)
.. ....+.+++..||+.||++||++.+++++++.+....
T Consensus 264 ~~-----~~~~l~~li~~~l~~~p~~RPs~~~il~~l~~l~~~~ 302 (307)
T 3lb7_A 264 KN-----CPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSL 302 (307)
T ss_dssp SS-----SCHHHHHHHHHHSCSSSTTSCCHHHHHHHHHHHHTTC
T ss_pred cC-----CcHHHHHHHHHHhhCChhhCcCHHHHHHHHHHHHhhc
Confidence 11 1256789999999999999999999999999876543
No 88
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Probab=100.00 E-value=1.8e-40 Score=377.14 Aligned_cols=264 Identities=22% Similarity=0.239 Sum_probs=216.2
Q ss_pred HHHHHHHhhccccceEEeeeceEEEEEEEecC-CceEEEEEecccC---cccHHHHHHHHHHHhcCCCCCcceeeeEEec
Q 002278 608 FDDIMRSTENLSEKYIVGYGASSTVYKCALKN-SRPIAVKKLYNQY---PHNLREFETELETIGSIRHRNIVSLHGYALS 683 (943)
Q Consensus 608 ~~~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~ 683 (943)
+.++....++|+..++||+|+||+||+|+++. ++.||+|++.+.. ......+.+|+.+++.++||||+++++++.+
T Consensus 66 ~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~ 145 (437)
T 4aw2_A 66 VKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQD 145 (437)
T ss_dssp HHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEEC
T ss_pred hhcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEee
Confidence 34455567899999999999999999999875 6789999986421 1222347889999999999999999999999
Q ss_pred CCcceEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccc
Q 002278 684 PYGNLLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFG 763 (943)
Q Consensus 684 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFG 763 (943)
++..++||||+++|+|.+++.. ....+++..+..++.|++.||+|||+. +||||||||+|||++.++.+||+|||
T Consensus 146 ~~~~~lV~Ey~~gg~L~~~l~~--~~~~l~e~~~~~~~~qi~~aL~~LH~~---giiHrDLKp~NILl~~~g~vkL~DFG 220 (437)
T 4aw2_A 146 DNNLYLVMDYYVGGDLLTLLSK--FEDRLPEEMARFYLAEMVIAIDSVHQL---HYVHRDIKPDNILMDMNGHIRLADFG 220 (437)
T ss_dssp SSEEEEEECCCTTCBHHHHHHT--TTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCT
T ss_pred CCEEEEEEecCCCCcHHHHHHH--ccCCCCHHHHHHHHHHHHHHHHHHHhC---CeEecccCHHHeeEcCCCCEEEcchh
Confidence 9999999999999999999974 235699999999999999999999999 99999999999999999999999999
Q ss_pred cccccCCCCCceeeeEecccceeCccccc-----cCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhcccc--
Q 002278 764 IARCIPTAMPHASTFVLGTIGYIDPEYAH-----TSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDN-- 836 (943)
Q Consensus 764 la~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~-- 836 (943)
+|+.............+||+.|+|||++. +..++.++|||||||++|||++|+.||.+.........+.....
T Consensus 221 la~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~~~~~~~~~~i~~~~~~~ 300 (437)
T 4aw2_A 221 SCLKLMEDGTVQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAESLVETYGKIMNHKERF 300 (437)
T ss_dssp TCEECCTTSCEECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTHHHHC
T ss_pred hhhhcccCCCcccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCCCChhHHHHhhhhccccc
Confidence 99877555444444467999999999987 56789999999999999999999999998776555444432211
Q ss_pred ccccccCcccccCccCHHHHHHHHHHHHHccCCCCCC--CCCHHHHHHHHhh
Q 002278 837 TVMEAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSE--RPTMQEVARVLVS 886 (943)
Q Consensus 837 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~--RPt~~el~~~L~~ 886 (943)
.++.. .+.+ ...+.+++++|+..+|++ ||++.|+++|-+-
T Consensus 301 ~~p~~-~~~~---------s~~~~dLi~~lL~~~~~r~~r~~~~eil~Hpff 342 (437)
T 4aw2_A 301 QFPTQ-VTDV---------SENAKDLIRRLICSREHRLGQNGIEDFKKHPFF 342 (437)
T ss_dssp CCCSS-CCCS---------CHHHHHHHHTTSSCGGGCTTTTTTHHHHTSGGG
T ss_pred cCCcc-cccC---------CHHHHHHHHHHhcccccccCCCCHHHHhCCCcc
Confidence 11111 0111 145678999999888888 9999999998653
No 89
>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A
Probab=100.00 E-value=4.4e-40 Score=365.99 Aligned_cols=257 Identities=18% Similarity=0.192 Sum_probs=207.3
Q ss_pred hhccccceEEeeeceEEEEEEEec-CCceEEEEEeccc-----CcccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcce
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQ-----YPHNLREFETELETIGSIRHRNIVSLHGYALSPYGNL 688 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~-----~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 688 (943)
.++|+..+.||+|+||+||+|.++ +++.||||++... .....+.+.+|+++++.++||||+++++++.+++..+
T Consensus 23 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~ 102 (351)
T 3c0i_A 23 EDVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLY 102 (351)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEE
T ss_pred ccceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEE
Confidence 467999999999999999999976 5789999998532 1234678999999999999999999999999999999
Q ss_pred EEEEEccCCChhhhccCCC-CCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCc---eeeccccc
Q 002278 689 LFYDYMVNGSLWDLLHGPS-KKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFD---AHLSDFGI 764 (943)
Q Consensus 689 lv~e~~~~g~L~~~l~~~~-~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~---~kl~DFGl 764 (943)
+||||+++|+|.+.+.... ....+++..+..++.|++.||+|||++ +|+||||||+||+++.++. +||+|||+
T Consensus 103 lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivHrDlkp~NIl~~~~~~~~~vkl~Dfg~ 179 (351)
T 3c0i_A 103 MVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCHDN---NIIHRDVKPHCVLLASKENSAPVKLGGFGV 179 (351)
T ss_dssp EEEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECSSSTTCCEEECCCTT
T ss_pred EEEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCChHHeEEecCCCCCcEEEecCcc
Confidence 9999999999988775221 223589999999999999999999999 9999999999999986654 99999999
Q ss_pred ccccCCCCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCc
Q 002278 765 ARCIPTAMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDP 844 (943)
Q Consensus 765 a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 844 (943)
++....... ......||+.|+|||++.+..++.++||||+||++|||++|+.||.+... .................++
T Consensus 180 a~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~-~~~~~i~~~~~~~~~~~~~ 257 (351)
T 3c0i_A 180 AIQLGESGL-VAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGTKE-RLFEGIIKGKYKMNPRQWS 257 (351)
T ss_dssp CEECCTTSC-BCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSSHH-HHHHHHHHTCCCCCHHHHT
T ss_pred eeEecCCCe-eecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCcHH-HHHHHHHcCCCCCCccccc
Confidence 987754322 22334699999999999999999999999999999999999999987532 1111221111111111111
Q ss_pred ccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 002278 845 EVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLV 885 (943)
Q Consensus 845 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~ 885 (943)
.+ ...+.+++..||+.||++|||+.++++|-+
T Consensus 258 ~~---------s~~~~~li~~~L~~dP~~R~s~~e~l~hp~ 289 (351)
T 3c0i_A 258 HI---------SESAKDLVRRMLMLDPAERITVYEALNHPW 289 (351)
T ss_dssp TS---------CHHHHHHHHHHTCSSTTTSCCHHHHHTSHH
T ss_pred cC---------CHHHHHHHHHHCCCChhHCcCHHHHhcChh
Confidence 11 246778999999999999999999998765
No 90
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Probab=100.00 E-value=5.3e-40 Score=367.69 Aligned_cols=252 Identities=19% Similarity=0.250 Sum_probs=205.7
Q ss_pred cccceEEeeeceEEEEEEEec-CCceEEEEEecccCcccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEEEEEccC
Q 002278 618 LSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYPHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLFYDYMVN 696 (943)
Q Consensus 618 ~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~ 696 (943)
|...+.||+|+||.||+|... +++.||+|++........+.+.+|++++++++||||+++++++.+.+..++||||+++
T Consensus 91 ~~~~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~~~~ 170 (373)
T 2x4f_A 91 VSKTEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDG 170 (373)
T ss_dssp EEEEEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTT
T ss_pred eecceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCCC
Confidence 344678999999999999975 5889999999766555667899999999999999999999999999999999999999
Q ss_pred CChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEE--CCCCceeecccccccccCCCCCc
Q 002278 697 GSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILI--DENFDAHLSDFGIARCIPTAMPH 774 (943)
Q Consensus 697 g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill--~~~~~~kl~DFGla~~~~~~~~~ 774 (943)
|+|.+++.. ....+++..+..++.|++.||+|||+. +|+||||||+||++ +.++.+||+|||+++.+.....
T Consensus 171 ~~L~~~l~~--~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~~~- 244 (373)
T 2x4f_A 171 GELFDRIID--ESYNLTELDTILFMKQICEGIRHMHQM---YILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPREK- 244 (373)
T ss_dssp CEEHHHHHH--TGGGCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEETTTTEEEECCCSSCEECCTTCB-
T ss_pred CcHHHHHHh--cCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccccCCHHHEEEecCCCCcEEEEeCCCceecCCccc-
Confidence 999998853 334689999999999999999999999 99999999999999 5678999999999987754322
Q ss_pred eeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCcccccCccCHH
Q 002278 775 ASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPEVSVTCVDLS 854 (943)
Q Consensus 775 ~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 854 (943)
.....||+.|+|||++.+..++.++|||||||++|||++|+.||.+......+..+............+.+
T Consensus 245 -~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~-------- 315 (373)
T 2x4f_A 245 -LKVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDNDAETLNNILACRWDLEDEEFQDI-------- 315 (373)
T ss_dssp -CCCCCSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCCSCSGGGTTS--------
T ss_pred -cccccCCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhccCCCChhhhccC--------
Confidence 22345999999999999999999999999999999999999999887766555444433222222211222
Q ss_pred HHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 002278 855 AVRKTFQLALLCTKRYPSERPTMQEVARVLV 885 (943)
Q Consensus 855 ~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~ 885 (943)
...+.+++..|++.||++|||+.|+++|-+
T Consensus 316 -~~~~~~li~~~L~~dp~~Rps~~e~l~hp~ 345 (373)
T 2x4f_A 316 -SEEAKEFISKLLIKEKSWRISASEALKHPW 345 (373)
T ss_dssp -CHHHHHHHHTTSCSSGGGSCCHHHHHHSHH
T ss_pred -CHHHHHHHHHHcCCChhhCCCHHHHhcCcC
Confidence 246778999999999999999999999755
No 91
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Probab=100.00 E-value=3.4e-40 Score=370.75 Aligned_cols=258 Identities=26% Similarity=0.363 Sum_probs=210.5
Q ss_pred HhhccccceEEeeeceEEEEEEEec-CCceEEEEEecccCc-ccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEEE
Q 002278 614 STENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYP-HNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLFY 691 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 691 (943)
..++|...+.||+|+||.||+|.++ +++.||||++..... ...+.+.+|+++++.++||||+++++++...+..++||
T Consensus 112 ~~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 191 (377)
T 3cbl_A 112 NHEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVM 191 (377)
T ss_dssp CGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSSCEEEE
T ss_pred chHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCCcEEEE
Confidence 4568899999999999999999987 688999999875432 23456889999999999999999999999999999999
Q ss_pred EEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccCCC
Q 002278 692 DYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIPTA 771 (943)
Q Consensus 692 e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~~~ 771 (943)
||+++|+|.+++.. ....+++.++..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++.....
T Consensus 192 e~~~~g~L~~~l~~--~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~~~~ 266 (377)
T 3cbl_A 192 ELVQGGDFLTFLRT--EGARLRVKTLLQMVGDAAAGMEYLESK---CCIHRDLAARNCLVTEKNVLKISDFGMSREEADG 266 (377)
T ss_dssp ECCTTCBHHHHHHH--HGGGCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCGGGCEECTTS
T ss_pred EcCCCCCHHHHHHh--cCCCCCHHHHHHHHHHHHHHHHHHHHC---CcCCcccCHHHEEEcCCCcEEECcCCCceecCCC
Confidence 99999999999962 234689999999999999999999999 9999999999999999999999999999865432
Q ss_pred CCcee-eeEecccceeCccccccCCCCCcchhhhHHHHHHHHHh-CCCCCCCCccHHHHHHHhccccccccccCcccccC
Q 002278 772 MPHAS-TFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILT-GKKAVDNESNLHQLIMSKADDNTVMEAVDPEVSVT 849 (943)
Q Consensus 772 ~~~~~-~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (943)
..... ....+++.|+|||++.+..++.++|||||||++|||+| |+.||.+............. ... ..+..
T Consensus 267 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~~~~~~~~~~~~-~~~------~~~~~ 339 (377)
T 3cbl_A 267 VYAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLSNQQTREFVEKG-GRL------PCPEL 339 (377)
T ss_dssp EEECCSSCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSCHHHHHHHHHTT-CCC------CCCTT
T ss_pred ceeecCCCCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcC-CCC------CCCCC
Confidence 11111 11235778999999999999999999999999999998 99999876554332222111 111 11111
Q ss_pred ccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcC
Q 002278 850 CVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLL 888 (943)
Q Consensus 850 ~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~ 888 (943)
....+.+++..||+.||++|||+.++++.|+.+.
T Consensus 340 -----~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i~ 373 (377)
T 3cbl_A 340 -----CPDAVFRLMEQCWAYEPGQRPSFSTIYQELQSIR 373 (377)
T ss_dssp -----CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred -----CCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHH
Confidence 1246778999999999999999999999998754
No 92
>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*
Probab=100.00 E-value=3.3e-40 Score=361.13 Aligned_cols=258 Identities=26% Similarity=0.381 Sum_probs=202.1
Q ss_pred hhccccceEEeeeceEEEEEEEec-CCceEEEEEecccCc---ccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcc---
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYP---HNLREFETELETIGSIRHRNIVSLHGYALSPYGN--- 687 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~--- 687 (943)
.++|+..+.||+|+||.||+|++. +++.||||++..... .....+.+|++++++++||||+++++++......
T Consensus 11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~ 90 (311)
T 3ork_A 11 SDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPL 90 (311)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEEE
T ss_pred cCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCcc
Confidence 468999999999999999999974 678999999976432 2345788999999999999999999998776554
Q ss_pred -eEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeeccccccc
Q 002278 688 -LLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIAR 766 (943)
Q Consensus 688 -~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~ 766 (943)
++||||+++|+|.+++. ....+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++
T Consensus 91 ~~lv~e~~~g~~L~~~l~---~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~a~ 164 (311)
T 3ork_A 91 PYIVMEYVDGVTLRDIVH---TEGPMTPKRAIEVIADACQALNFSHQN---GIIHRDVKPANIMISATNAVKVMDFGIAR 164 (311)
T ss_dssp EEEEEECCCEEEHHHHHH---HHCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEETTSCEEECCCSCC-
T ss_pred cEEEEecCCCCCHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHC---CCCcCCCCHHHEEEcCCCCEEEeeccCcc
Confidence 99999999999999996 345689999999999999999999999 99999999999999999999999999998
Q ss_pred ccCCCCC--ceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCc
Q 002278 767 CIPTAMP--HASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDP 844 (943)
Q Consensus 767 ~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 844 (943)
....... .......||+.|+|||++.+..++.++|||||||++|||+||+.||.+......................+
T Consensus 165 ~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (311)
T 3ork_A 165 AIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDPIPPSARHE 244 (311)
T ss_dssp -----------------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHCCCCCHHHHST
T ss_pred cccccccccccccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHhcCCCCCcccccC
Confidence 7644322 12233568999999999999999999999999999999999999998776655444433333222222222
Q ss_pred ccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHH-HHhhc
Q 002278 845 EVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVAR-VLVSL 887 (943)
Q Consensus 845 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~-~L~~~ 887 (943)
.+ ...+.+++.+||+.||++||++.++++ .+...
T Consensus 245 ~~---------~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~ 279 (311)
T 3ork_A 245 GL---------SADLDAVVLKALAKNPENRYQTAAEMRADLVRV 279 (311)
T ss_dssp TC---------CHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHH
T ss_pred CC---------CHHHHHHHHHHHhcCHhhChhhHHHHHHHHHHH
Confidence 22 246778999999999999997666554 44443
No 93
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Probab=100.00 E-value=5.5e-40 Score=378.17 Aligned_cols=261 Identities=25% Similarity=0.406 Sum_probs=215.1
Q ss_pred HhhccccceEEeeeceEEEEEEEecCCceEEEEEecccCcccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEEEEE
Q 002278 614 STENLSEKYIVGYGASSTVYKCALKNSRPIAVKKLYNQYPHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLFYDY 693 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 693 (943)
..++|+..+.||+|+||.||+|.++.+..||||++... ....+.+.+|+++++.++|||||++++++. ....++||||
T Consensus 186 ~~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~l~~~~~-~~~~~lv~e~ 263 (454)
T 1qcf_A 186 PRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPG-SMSVEAFLAEANVMKTLQHDKLVKLHAVVT-KEPIYIITEF 263 (454)
T ss_dssp CGGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTT-SBCHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEECC
T ss_pred chHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCC-CccHHHHHHHHHHHhhCCCCCEeeEEEEEe-CCccEEEEee
Confidence 46789999999999999999999988899999999754 345788999999999999999999999986 5678999999
Q ss_pred ccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccCCCCC
Q 002278 694 MVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIPTAMP 773 (943)
Q Consensus 694 ~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~~~~~ 773 (943)
+++|+|.+++... ....+++..+..++.||+.||+|||++ +|+||||||+|||++.++.+||+|||+++.......
T Consensus 264 ~~~g~L~~~l~~~-~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~~~~ 339 (454)
T 1qcf_A 264 MAKGSLLDFLKSD-EGSKQPLPKLIDFSAQIAEGMAFIEQR---NYIHRDLRAANILVSASLVCKIADFGLARVIEDNEY 339 (454)
T ss_dssp CTTCBHHHHHHSH-HHHTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCSGGGEEECTTCCEEECSTTGGGGBCCHHH
T ss_pred cCCCcHHHHHHhc-cCCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCHHHEEECCCCcEEEeeCCCceEcCCCce
Confidence 9999999999632 123688999999999999999999999 999999999999999999999999999987643221
Q ss_pred ceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHh-CCCCCCCCccHHHHHHHhccccccccccCcccccCccC
Q 002278 774 HASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILT-GKKAVDNESNLHQLIMSKADDNTVMEAVDPEVSVTCVD 852 (943)
Q Consensus 774 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 852 (943)
.......+++.|+|||++.+..++.++|||||||++|||+| |+.||.+............. ... ..+.
T Consensus 340 ~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~~~~~~~~~i~~~-~~~------~~~~---- 408 (454)
T 1qcf_A 340 TAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNPEVIRALERG-YRM------PRPE---- 408 (454)
T ss_dssp HTTCSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHHT-CCC------CCCT----
T ss_pred eccCCCcccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcC-CCC------CCCC----
Confidence 22222346789999999999999999999999999999999 99999876554433222211 111 0111
Q ss_pred HHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCCCCC
Q 002278 853 LSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLPAPP 892 (943)
Q Consensus 853 ~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~~~~ 892 (943)
.....+.+++..||+.||++|||+.++++.|+.+.....
T Consensus 409 -~~~~~l~~li~~cl~~dp~~RPt~~~i~~~L~~~~~~~~ 447 (454)
T 1qcf_A 409 -NCPEELYNIMMRCWKNRPEERPTFEYIQSVLDDFYTATE 447 (454)
T ss_dssp -TSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSSSSC
T ss_pred -CCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHHhccc
Confidence 112467899999999999999999999999998876543
No 94
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=4.4e-39 Score=372.78 Aligned_cols=347 Identities=27% Similarity=0.404 Sum_probs=224.0
Q ss_pred cCCCCCcEEeccCCCcCCccchhccccccceEEEecCcccccCCCcccCCCCCCcEEEEeccccccccchhcccccccee
Q 002278 83 GNCGSLVHIELSDNSLYGDIPFSISKLKQLEFLNLKNNQLTGPIPSTLTQIPNLKTLDLARNQLTGEIPRLIYWNEVLQY 162 (943)
Q Consensus 83 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 162 (943)
..+++|+.|++++|.+. .+| .+..+++|++|+|++|.+++..+ +.++++|++|+|++|++++..+ +..+++|++
T Consensus 43 ~~l~~l~~L~l~~~~i~-~l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~ 116 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116 (466)
T ss_dssp HHHHTCCEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred hHhccccEEecCCCCCc-cCc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence 34678888888888887 455 37788888888888888885543 8888888888888888885544 777788888
Q ss_pred ccccCCccCCCCCcccccccccceeeccceecccccCCCCcCCCcccEEEeecccccCcCCCCCCcceEeEEEecCcccc
Q 002278 163 LGLRGNALTGMLSPDMCQLTGLWYFDVRGNNLTGTIPDSIGNCTSFEILDISYNQITGEIPYNIGFLQVATLSLQGNKLT 242 (943)
Q Consensus 163 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~L~~L~L~~n~l~ 242 (943)
|++++|.++++.+ +..+++|++|++++|.+++. + .+..+++|++|+++ |.+.
T Consensus 117 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~----------------------- 168 (466)
T 1o6v_A 117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVT----------------------- 168 (466)
T ss_dssp EECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCC-----------------------
T ss_pred EECCCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-Cccc-----------------------
Confidence 8888888877643 77777777777777777743 2 36777777777775 3332
Q ss_pred ccCCccccccCCCcEEecCCCCCCCCCCcccCCCCCcceEEecCCCCCCCCCCCcCCCCcCcEEEcccCccccccccccC
Q 002278 243 GKIPEVIGLMQALAVLDLSENELVGPIPPILGNLSYTGKLYLHGNKLTGPIPPELGNMSKLSYLQLQNNQLVGTIPAELG 322 (943)
Q Consensus 243 ~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 322 (943)
+. ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+++..| +..+++|+.|++++|++++. ..+.
T Consensus 169 ~~--~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~ 240 (466)
T 1o6v_A 169 DL--KPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLA 240 (466)
T ss_dssp CC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGG
T ss_pred Cc--hhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhh
Confidence 11 1266777888888888887753 346677777777777777775544 56667777777777776643 3456
Q ss_pred CcccceEEEccccccCCcCcccccCCCcCcEEEeeCCcccCcccccccccCccceeeccCCcCCCCCCCCCCCCCCccEE
Q 002278 323 KLEQLFELNLADNNLEGPIPHNISSCTALNQFNVHGNRLSGAIPSSFRNLGSLTYLNLSRNNFKGKVPTELGRIINLDTL 402 (943)
Q Consensus 323 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 402 (943)
.+++|+.|++++|.+.+..+ +..+++|+.|++++|++++..+ +..+++|+.|+|++|++++..+ +..+++|+.|
T Consensus 241 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L 314 (466)
T 1o6v_A 241 SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYL 314 (466)
T ss_dssp GCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEE
T ss_pred cCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEE
Confidence 66666666666666665443 5666666666666666664433 5556666666666666654322 4555555555
Q ss_pred ecCCCcCCCccCCCcccccccceeecccccccccCCccccCCCccceecccCccccccCChhhhcccccceecccCcccC
Q 002278 403 DLSVNNFSGSVPASIGDLEHLLTLNLSRNHLNGLLPAEFGNLRSIQTIDMSFNQLSGSIPAELGQLQNIISLILNNNNLQ 482 (943)
Q Consensus 403 ~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 482 (943)
++++|++++..| +..+++|+.|++++|++++. ..+.++++|+.|++++|++++..| +..+++|+.|++++|+++
T Consensus 315 ~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~ 388 (466)
T 1o6v_A 315 TLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWT 388 (466)
T ss_dssp ECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEE
T ss_pred ECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCccc
Confidence 555555554433 45555555555555555543 345555555555555555554443 555555555555555555
Q ss_pred C
Q 002278 483 G 483 (943)
Q Consensus 483 ~ 483 (943)
+
T Consensus 389 ~ 389 (466)
T 1o6v_A 389 N 389 (466)
T ss_dssp C
T ss_pred C
Confidence 3
No 95
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=6.5e-40 Score=364.45 Aligned_cols=265 Identities=24% Similarity=0.324 Sum_probs=211.7
Q ss_pred HhhccccceEEeeeceEEEEEEEec------CCceEEEEEecccC-cccHHHHHHHHHHHhcC-CCCCcceeeeEEecCC
Q 002278 614 STENLSEKYIVGYGASSTVYKCALK------NSRPIAVKKLYNQY-PHNLREFETELETIGSI-RHRNIVSLHGYALSPY 685 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~ 685 (943)
..++|+..+.||+|+||.||+|.+. .+..||+|++.... ....+.+.+|+++++++ +||||+++++++...+
T Consensus 43 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~ 122 (344)
T 1rjb_A 43 PRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSG 122 (344)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred CHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEeeCC
Confidence 5678999999999999999999962 34679999986542 33456789999999999 8999999999999999
Q ss_pred cceEEEEEccCCChhhhccCCCCC--------------------ccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCC
Q 002278 686 GNLLFYDYMVNGSLWDLLHGPSKK--------------------VKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVK 745 (943)
Q Consensus 686 ~~~lv~e~~~~g~L~~~l~~~~~~--------------------~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk 745 (943)
..++||||+++|+|.+++...... ..+++..++.++.|++.||+|||+. +|+|||||
T Consensus 123 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dik 199 (344)
T 1rjb_A 123 PIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFK---SCVHRDLA 199 (344)
T ss_dssp SCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHT---TEEETTCS
T ss_pred ccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCC
Confidence 999999999999999999753221 3479999999999999999999999 99999999
Q ss_pred CccEEECCCCceeecccccccccCCCCCc-eeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHh-CCCCCCCCc
Q 002278 746 SSNILIDENFDAHLSDFGIARCIPTAMPH-ASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILT-GKKAVDNES 823 (943)
Q Consensus 746 p~Nill~~~~~~kl~DFGla~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-G~~p~~~~~ 823 (943)
|+||+++.++.+||+|||+++........ ......||+.|+|||++.+..++.++|||||||++|||+| |+.||.+..
T Consensus 200 p~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~ 279 (344)
T 1rjb_A 200 ARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIP 279 (344)
T ss_dssp GGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCC
T ss_pred hhhEEEcCCCcEEeCCCccCcccccCccceeccCccCccCccCHHHhccCCCChhHhHHHHHHHHHHHHcCCCCCcccCC
Confidence 99999999999999999999876443322 2334557889999999999999999999999999999998 999998765
Q ss_pred cHHHHHHHhccccccccccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCCCCC
Q 002278 824 NLHQLIMSKADDNTVMEAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLPAPP 892 (943)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~~~~ 892 (943)
.............. +..+.. ....+.+++..||+.||++|||+.+++++|+.+....+
T Consensus 280 ~~~~~~~~~~~~~~------~~~~~~-----~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~~~ 337 (344)
T 1rjb_A 280 VDANFYKLIQNGFK------MDQPFY-----ATEEIYIIMQSCWAFDSRKRPSFPNLTSFLGCQLADAE 337 (344)
T ss_dssp CSHHHHHHHHTTCC------CCCCTT-----CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC----
T ss_pred cHHHHHHHHhcCCC------CCCCCC-----CCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHHHHH
Confidence 43333332222111 111111 12467889999999999999999999999998876544
No 96
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*
Probab=100.00 E-value=9.4e-40 Score=359.78 Aligned_cols=258 Identities=21% Similarity=0.340 Sum_probs=205.5
Q ss_pred hhccccceEEeeeceEEEEEEEecC-Cce----EEEEEecccC-cccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcce
Q 002278 615 TENLSEKYIVGYGASSTVYKCALKN-SRP----IAVKKLYNQY-PHNLREFETELETIGSIRHRNIVSLHGYALSPYGNL 688 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~----vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 688 (943)
.++|+..+.||+|+||+||+|.+.. ++. ||+|.+.... ......+.+|+.+++.++||||+++++++. +...+
T Consensus 12 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~ 90 (325)
T 3kex_A 12 ETELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCP-GSSLQ 90 (325)
T ss_dssp TTTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEEC-BSSEE
T ss_pred HhHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEc-CCccE
Confidence 4578899999999999999999753 443 7788775433 233456788999999999999999999986 45689
Q ss_pred EEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeeccccccccc
Q 002278 689 LFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCI 768 (943)
Q Consensus 689 lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~ 768 (943)
+||||+++|+|.+++.. ....+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++..
T Consensus 91 ~v~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~ 165 (325)
T 3kex_A 91 LVTQYLPLGSLLDHVRQ--HRGALGPQLLLNWGVQIAKGMYYLEEH---GMVHRNLAARNVLLKSPSQVQVADFGVADLL 165 (325)
T ss_dssp EEEECCTTCBSHHHHHS--SGGGSCTTHHHHHHHHHHHHHHHHHHT---TCCCSCCSSTTEEESSSSCEEECSCSGGGGS
T ss_pred EEEEeCCCCCHHHHHHH--ccccCCHHHHHHHHHHHHHHHHHHHhC---CCCCCccchheEEECCCCeEEECCCCccccc
Confidence 99999999999999973 245789999999999999999999999 9999999999999999999999999999987
Q ss_pred CCCCCc-eeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHh-CCCCCCCCccHHHHHHHhcccc-ccccccCcc
Q 002278 769 PTAMPH-ASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILT-GKKAVDNESNLHQLIMSKADDN-TVMEAVDPE 845 (943)
Q Consensus 769 ~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-G~~p~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 845 (943)
...... ......|+..|+|||++.+..++.++|||||||++|||+| |+.||.+............... .......
T Consensus 166 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-- 243 (325)
T 3kex_A 166 PPDDKQLLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRLAEVPDLLEKGERLAQPQICT-- 243 (325)
T ss_dssp CCCTTCCC-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCTTHHHHHHHTTCBCCCCTTBC--
T ss_pred CcccccccccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccCHHHHHHHHHcCCCCCCCCcCc--
Confidence 544322 2344568889999999999999999999999999999999 9999986554332222222111 1111111
Q ss_pred cccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCCCC
Q 002278 846 VSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLPAP 891 (943)
Q Consensus 846 ~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~~~ 891 (943)
..+.+++..||+.||++|||+.+++++|+.+...+
T Consensus 244 -----------~~~~~li~~~l~~dp~~Rps~~el~~~l~~~~~~~ 278 (325)
T 3kex_A 244 -----------IDVYMVMVKCWMIDENIRPTFKELANEFTRMARDP 278 (325)
T ss_dssp -----------TTTTHHHHHHTCSCTTTSCCHHHHHHHHHHHTTSH
T ss_pred -----------HHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhcc
Confidence 23458999999999999999999999999876543
No 97
>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A
Probab=100.00 E-value=1.9e-39 Score=356.67 Aligned_cols=254 Identities=22% Similarity=0.298 Sum_probs=212.6
Q ss_pred hhccccceEEeeeceEEEEEEEec-CCceEEEEEecccCc------ccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcc
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYP------HNLREFETELETIGSIRHRNIVSLHGYALSPYGN 687 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~------~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 687 (943)
.++|+..+.||+|+||.||+|.++ +++.||+|++..... ...+.+.+|+++++.++||||+++++++.+....
T Consensus 11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 90 (321)
T 2a2a_A 11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTDV 90 (321)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred hccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCEE
Confidence 467999999999999999999976 578999999865432 2467899999999999999999999999999999
Q ss_pred eEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCC----ceeecccc
Q 002278 688 LLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENF----DAHLSDFG 763 (943)
Q Consensus 688 ~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~----~~kl~DFG 763 (943)
++||||+++++|.+++. ....+++..+..++.|++.||+|||+. +|+||||||+||+++.++ .+||+|||
T Consensus 91 ~lv~e~~~~~~L~~~l~---~~~~~~~~~~~~i~~qi~~aL~~lH~~---~ivH~dikp~NIl~~~~~~~~~~~kl~Dfg 164 (321)
T 2a2a_A 91 VLILELVSGGELFDFLA---QKESLSEEEATSFIKQILDGVNYLHTK---KIAHFDLKPENIMLLDKNIPIPHIKLIDFG 164 (321)
T ss_dssp EEEECCCCSCBHHHHHH---TCSCEEHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCTTSSSCCEEECCCT
T ss_pred EEEEEcCCCCcHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCChHHEEEecCCCCcCCEEEccCc
Confidence 99999999999999997 345689999999999999999999999 999999999999999887 79999999
Q ss_pred cccccCCCCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccC
Q 002278 764 IARCIPTAMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVD 843 (943)
Q Consensus 764 la~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 843 (943)
+++....... .....||+.|+|||++.+..++.++|||||||++|||++|+.||.+......................
T Consensus 165 ~~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~ 242 (321)
T 2a2a_A 165 LAHEIEDGVE--FKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTKQETLANITSVSYDFDEEFF 242 (321)
T ss_dssp TCEECCTTCC--CCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSHHHHHHHHHTTCCCCCHHHH
T ss_pred cceecCcccc--ccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHhcccccChhhh
Confidence 9987654322 22345999999999999999999999999999999999999999877655544443332222221111
Q ss_pred cccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 002278 844 PEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLV 885 (943)
Q Consensus 844 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~ 885 (943)
+.+ ...+.+++..|++.||++|||+.|+++|-+
T Consensus 243 ~~~---------~~~~~~li~~~l~~dp~~Rps~~e~l~hp~ 275 (321)
T 2a2a_A 243 SHT---------SELAKDFIRKLLVKETRKRLTIQEALRHPW 275 (321)
T ss_dssp TTC---------CHHHHHHHHTTSCSSTTTSCCHHHHHHSTT
T ss_pred ccc---------CHHHHHHHHHHcCCChhhCcCHHHHhcCcc
Confidence 111 145778999999999999999999999754
No 98
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}
Probab=100.00 E-value=5.6e-40 Score=368.09 Aligned_cols=252 Identities=20% Similarity=0.282 Sum_probs=203.3
Q ss_pred HhhccccceEEeeeceEEEEEEEec-CCceEEEEEecccC---cccHHHHHHHHHHHhcC-CCCCcceeeeEEecCCcce
Q 002278 614 STENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQY---PHNLREFETELETIGSI-RHRNIVSLHGYALSPYGNL 688 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~ 688 (943)
..++|+..++||+|+||+||+|+.+ +++.||+|++.+.. ....+.+.+|..+++++ +|||||++++++.+....+
T Consensus 50 ~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~ 129 (396)
T 4dc2_A 50 GLQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLF 129 (396)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEE
T ss_pred ChhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEEE
Confidence 3568999999999999999999987 46789999987543 22234578899998876 8999999999999999999
Q ss_pred EEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeeccccccccc
Q 002278 689 LFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCI 768 (943)
Q Consensus 689 lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~ 768 (943)
+||||+++|+|.+++. ....+++..+..++.||+.||+|||++ +|+||||||+|||++.++++||+|||+|+..
T Consensus 130 lV~E~~~gg~L~~~l~---~~~~l~~~~~~~~~~qi~~aL~~LH~~---givHrDLKp~NILl~~~g~ikL~DFGla~~~ 203 (396)
T 4dc2_A 130 FVIEYVNGGDLMFHMQ---RQRKLPEEHARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTDYGMCKEG 203 (396)
T ss_dssp EEEECCTTCBHHHHHH---HHSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCTTCBCC
T ss_pred EEEEcCCCCcHHHHHH---HcCCCCHHHHHHHHHHHHHHHHHHHHC---CEEeccCCHHHEEECCCCCEEEeecceeeec
Confidence 9999999999999986 345799999999999999999999999 9999999999999999999999999999864
Q ss_pred CCCCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCcc--------HHHHHHH-hccccccc
Q 002278 769 PTAMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESN--------LHQLIMS-KADDNTVM 839 (943)
Q Consensus 769 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~--------~~~~~~~-~~~~~~~~ 839 (943)
.... ......+||+.|+|||++.+..++.++||||+||++|||++|+.||..... ....... ......++
T Consensus 204 ~~~~-~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~~~~~~~~~~~~~~~~~~~i~~~~~~~p 282 (396)
T 4dc2_A 204 LRPG-DTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQIRIP 282 (396)
T ss_dssp CCTT-CCBCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTTTTC------CCHHHHHHHHHHCCCCCC
T ss_pred ccCC-CccccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcccccccccchhhHHHHHHHHhccccCCC
Confidence 3222 223345799999999999999999999999999999999999999964321 1111111 11111111
Q ss_pred cccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCH------HHHHHHHh
Q 002278 840 EAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTM------QEVARVLV 885 (943)
Q Consensus 840 ~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~------~el~~~L~ 885 (943)
+.+ ...+.+++..||+.||++||++ .|+++|-+
T Consensus 283 ----~~~---------s~~~~~li~~lL~~dP~~R~~~~~~~~~~ei~~Hpf 321 (396)
T 4dc2_A 283 ----RSL---------SVKAASVLKSFLNKDPKERLGCHPQTGFADIQGHPF 321 (396)
T ss_dssp ----TTS---------CHHHHHHHHHHTCSCTTTSTTCSTTTHHHHHHHSTT
T ss_pred ----CcC---------CHHHHHHHHHHhcCCHhHcCCCCCCCCHHHHhcCcc
Confidence 111 1456789999999999999985 78887654
No 99
>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*
Probab=100.00 E-value=5.5e-40 Score=361.55 Aligned_cols=251 Identities=22% Similarity=0.261 Sum_probs=200.7
Q ss_pred hhccccceEEeeeceEEEEEEEe----cCCceEEEEEecccC----cccHHHHHHHHHHHhcCCCCCcceeeeEEecCCc
Q 002278 615 TENLSEKYIVGYGASSTVYKCAL----KNSRPIAVKKLYNQY----PHNLREFETELETIGSIRHRNIVSLHGYALSPYG 686 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~----~~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 686 (943)
.++|+..+.||+|+||.||+|+. .+++.||+|++.+.. ......+.+|+++++.++||||+++++++...+.
T Consensus 16 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~ 95 (327)
T 3a62_A 16 PECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTGGK 95 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECSSC
T ss_pred HHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcCCE
Confidence 46899999999999999999997 368899999987542 2334567889999999999999999999999999
Q ss_pred ceEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeeccccccc
Q 002278 687 NLLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIAR 766 (943)
Q Consensus 687 ~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~ 766 (943)
.++||||+++|+|.+++. ....+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++
T Consensus 96 ~~lv~e~~~~~~L~~~l~---~~~~~~~~~~~~~~~qi~~al~~lH~~---~ivH~Dlkp~Nill~~~~~~kl~Dfg~~~ 169 (327)
T 3a62_A 96 LYLILEYLSGGELFMQLE---REGIFMEDTACFYLAEISMALGHLHQK---GIIYRDLKPENIMLNHQGHVKLTDFGLCK 169 (327)
T ss_dssp EEEEEECCTTEEHHHHHH---HHSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCTTTEEECTTSCEEECCCSCC-
T ss_pred EEEEEeCCCCCcHHHHHH---hCCCCCHHHHHHHHHHHHHHHHHHHhC---CEEcccCCHHHeEECCCCcEEEEeCCccc
Confidence 999999999999999986 345689999999999999999999999 99999999999999999999999999997
Q ss_pred ccCCCCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCccc
Q 002278 767 CIPTAMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPEV 846 (943)
Q Consensus 767 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 846 (943)
....... ......||+.|+|||++.+..++.++|||||||++|||++|+.||.+.................+ +.+
T Consensus 170 ~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~p----~~~ 244 (327)
T 3a62_A 170 ESIHDGT-VTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENRKKTIDKILKCKLNLP----PYL 244 (327)
T ss_dssp ----------CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHTCCCCC----TTS
T ss_pred ccccCCc-cccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCCCCHHHHHHHHHhCCCCCC----CCC
Confidence 6433221 12234589999999999999999999999999999999999999987765544433333222211 111
Q ss_pred ccCccCHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHHHHh
Q 002278 847 SVTCVDLSAVRKTFQLALLCTKRYPSERP-----TMQEVARVLV 885 (943)
Q Consensus 847 ~~~~~~~~~~~~l~~l~~~cl~~dP~~RP-----t~~el~~~L~ 885 (943)
...+.+++.+||+.||++|| ++.++++|-+
T Consensus 245 ---------~~~~~~li~~~L~~dp~~R~~~~~~~~~e~l~hp~ 279 (327)
T 3a62_A 245 ---------TQEARDLLKKLLKRNAASRLGAGPGDAGEVQAHPF 279 (327)
T ss_dssp ---------CHHHHHHHHHHSCSCGGGSTTSSTTTHHHHHHSGG
T ss_pred ---------CHHHHHHHHHHHhcCHhhccCCCCCCHHHHHcCCc
Confidence 14567899999999999999 8889998865
No 100
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}
Probab=100.00 E-value=1.2e-39 Score=361.94 Aligned_cols=253 Identities=23% Similarity=0.322 Sum_probs=194.8
Q ss_pred HhhccccceEEeeeceEEEEEEEec-CCceEEEEEecccCcccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEEEE
Q 002278 614 STENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYPHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLFYD 692 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 692 (943)
..++|+..+.||+|+||+||+|+++ +++.||||++.... ..+.+.+|++++++++||||+++++++.+....++|||
T Consensus 51 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e 128 (349)
T 2w4o_A 51 LSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV--DKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLVLE 128 (349)
T ss_dssp GGGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC------------CHHHHHCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred ccCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch--hHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEEEEE
Confidence 3567999999999999999999987 47889999987543 34678899999999999999999999999999999999
Q ss_pred EccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECC---CCceeecccccccccC
Q 002278 693 YMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDE---NFDAHLSDFGIARCIP 769 (943)
Q Consensus 693 ~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~---~~~~kl~DFGla~~~~ 769 (943)
|+++|+|.+++. ....+++.++..++.|++.||+|||+. +|+||||||+||+++. ++.+||+|||+++...
T Consensus 129 ~~~~~~L~~~l~---~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~~ 202 (349)
T 2w4o_A 129 LVTGGELFDRIV---EKGYYSERDAADAVKQILEAVAYLHEN---GIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVE 202 (349)
T ss_dssp CCCSCBHHHHHT---TCSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEESSSSTTCCEEECCCC------
T ss_pred eCCCCCHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCcccEEEecCCCCCCEEEccCccccccC
Confidence 999999999986 345689999999999999999999999 9999999999999975 8899999999998764
Q ss_pred CCCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhcc-ccccccccCccccc
Q 002278 770 TAMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKAD-DNTVMEAVDPEVSV 848 (943)
Q Consensus 770 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 848 (943)
... ......||+.|+|||++.+..++.++|||||||++|||++|+.||............... .........+.+
T Consensus 203 ~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~i~~~~~~~~~~~~~~~-- 278 (349)
T 2w4o_A 203 HQV--LMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGDQFMFRRILNCEYYFISPWWDEV-- 278 (349)
T ss_dssp ------------CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTTCHHHHHHHHHTTCCCCCTTTTTTS--
T ss_pred ccc--ccccccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCcccHHHHHHHHhCCCccCCchhhhC--
Confidence 332 223456999999999999999999999999999999999999999866554433322222 111111111122
Q ss_pred CccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 002278 849 TCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLV 885 (943)
Q Consensus 849 ~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~ 885 (943)
...+.+++.+|++.||++|||+.+++++-+
T Consensus 279 -------~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~ 308 (349)
T 2w4o_A 279 -------SLNAKDLVRKLIVLDPKKRLTTFQALQHPW 308 (349)
T ss_dssp -------CHHHHHHHHTTSCSSGGGSCCHHHHHHSTT
T ss_pred -------CHHHHHHHHHHccCChhhCcCHHHHhcCcc
Confidence 246778999999999999999999999854
No 101
>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0
Probab=100.00 E-value=2.1e-39 Score=347.46 Aligned_cols=253 Identities=26% Similarity=0.386 Sum_probs=198.5
Q ss_pred hhccccceEEeeeceEEEEEEEecCCceEEEEEecccC----cccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEE
Q 002278 615 TENLSEKYIVGYGASSTVYKCALKNSRPIAVKKLYNQY----PHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLF 690 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 690 (943)
.++|+..+.||+|+||.||+|.+. ++.||||++.... ....+.+.+|+++++.++||||+++++++.+++..++|
T Consensus 6 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 84 (271)
T 3dtc_A 6 FAELTLEEIIGIGGFGKVYRAFWI-GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCLV 84 (271)
T ss_dssp TTSEEEEEEEEEETTEEEEEEEET-TEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--CEEE
T ss_pred hhheeeeeeeccCCCeEEEEEEEc-CCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEEE
Confidence 467899999999999999999976 7889999986543 23356789999999999999999999999999999999
Q ss_pred EEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECC--------CCceeeccc
Q 002278 691 YDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDE--------NFDAHLSDF 762 (943)
Q Consensus 691 ~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~--------~~~~kl~DF 762 (943)
|||+++++|.+++. ...+++..++.++.|++.||+|||++...+|+||||||+||+++. ++.+||+||
T Consensus 85 ~e~~~~~~L~~~~~----~~~~~~~~~~~i~~~l~~~l~~lH~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~Df 160 (271)
T 3dtc_A 85 MEFARGGPLNRVLS----GKRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDF 160 (271)
T ss_dssp EECCTTEEHHHHHT----SSCCCHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEECCC
T ss_pred EEcCCCCCHHHHhh----cCCCCHHHHHHHHHHHHHHHHHHHhCCCCceeecCCchHHEEEecccccccccCcceEEccC
Confidence 99999999999985 346899999999999999999999981112999999999999986 778999999
Q ss_pred ccccccCCCCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhcccccccccc
Q 002278 763 GIARCIPTAMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAV 842 (943)
Q Consensus 763 Gla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~ 842 (943)
|+++....... ....||+.|+|||++.+..++.++||||+|+++|||++|+.||.+................ ...
T Consensus 161 g~~~~~~~~~~---~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~--~~~ 235 (271)
T 3dtc_A 161 GLAREWHRTTK---MSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGLAVAYGVAMNKLA--LPI 235 (271)
T ss_dssp CC----------------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTSCHHHHHHHHHTSCCC--CCC
T ss_pred Ccccccccccc---cCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHhhhcCCCC--CCC
Confidence 99986644322 2346999999999999999999999999999999999999999876654443333222111 111
Q ss_pred CcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhh
Q 002278 843 DPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVS 886 (943)
Q Consensus 843 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~ 886 (943)
.... ...+.+++..||+.||++|||+.|++++|+.
T Consensus 236 ~~~~---------~~~~~~li~~~l~~~p~~Rps~~e~l~~L~~ 270 (271)
T 3dtc_A 236 PSTC---------PEPFAKLMEDCWNPDPHSRPSFTNILDQLTT 270 (271)
T ss_dssp CTTC---------CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHC
T ss_pred Cccc---------CHHHHHHHHHHhcCCcccCcCHHHHHHHHhc
Confidence 1111 2467899999999999999999999999975
No 102
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*
Probab=100.00 E-value=6.1e-40 Score=366.97 Aligned_cols=269 Identities=25% Similarity=0.327 Sum_probs=215.3
Q ss_pred cCHHHHHHHhhccccceEEeeeceEEEEEEEec------CCceEEEEEecccCc-ccHHHHHHHHHHHhcC-CCCCccee
Q 002278 606 HTFDDIMRSTENLSEKYIVGYGASSTVYKCALK------NSRPIAVKKLYNQYP-HNLREFETELETIGSI-RHRNIVSL 677 (943)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~------~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l-~h~niv~l 677 (943)
+...+.....++|+..+.||+|+||.||+|++. +++.||||++..... ...+.+.+|+++++++ +||||+++
T Consensus 12 ~~~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~~ 91 (359)
T 3vhe_A 12 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL 91 (359)
T ss_dssp CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred CCcccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceeee
Confidence 344555567789999999999999999999843 357899999975432 3346789999999999 78999999
Q ss_pred eeEEecCCc-ceEEEEEccCCChhhhccCCCC------------------------------------------------
Q 002278 678 HGYALSPYG-NLLFYDYMVNGSLWDLLHGPSK------------------------------------------------ 708 (943)
Q Consensus 678 ~~~~~~~~~-~~lv~e~~~~g~L~~~l~~~~~------------------------------------------------ 708 (943)
++++.+.+. .++||||+++|+|.+++.....
T Consensus 92 ~~~~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (359)
T 3vhe_A 92 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEK 171 (359)
T ss_dssp EEEECSTTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC------------------------------------------
T ss_pred eeeeecCCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCcccccccccccccc
Confidence 999987655 8999999999999999975322
Q ss_pred ---------------CccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccCCCCC
Q 002278 709 ---------------KVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIPTAMP 773 (943)
Q Consensus 709 ---------------~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~~~~~ 773 (943)
...+++..++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++.......
T Consensus 172 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~ 248 (359)
T 3vhe_A 172 SLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPD 248 (359)
T ss_dssp ------------CTTTTCBCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCGGGSCTTSCTT
T ss_pred ccchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChhhEEEcCCCcEEEEeccceeeeccccc
Confidence 12289999999999999999999999 999999999999999999999999999987643322
Q ss_pred -ceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHh-CCCCCCCCccHHHHHHHhccccccccccCcccccCcc
Q 002278 774 -HASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILT-GKKAVDNESNLHQLIMSKADDNTVMEAVDPEVSVTCV 851 (943)
Q Consensus 774 -~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 851 (943)
.......||+.|+|||++.+..++.++|||||||++|||+| |+.||.+................. ..+..
T Consensus 249 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~~------~~~~~-- 320 (359)
T 3vhe_A 249 YVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEEFCRRLKEGTRM------RAPDY-- 320 (359)
T ss_dssp CEEC--CEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHHHHHHHHHTCCC------CCCTT--
T ss_pred chhccccCCCceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccchhHHHHHHHHcCCCC------CCCCC--
Confidence 23344568999999999999999999999999999999998 999998765433333322221111 11111
Q ss_pred CHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcC
Q 002278 852 DLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLL 888 (943)
Q Consensus 852 ~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~ 888 (943)
....+.+++..||+.||++|||+.+++++|+.+.
T Consensus 321 ---~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~ 354 (359)
T 3vhe_A 321 ---TTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLL 354 (359)
T ss_dssp ---CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHH
Confidence 1146778999999999999999999999998765
No 103
>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=1.5e-39 Score=361.59 Aligned_cols=263 Identities=20% Similarity=0.182 Sum_probs=209.0
Q ss_pred HHHHhhccccceEEeeeceEEEEEEEec-CCceEEEEEeccc-----CcccHHHHHHHHHHHhcCCCCCcceeeeEEecC
Q 002278 611 IMRSTENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQ-----YPHNLREFETELETIGSIRHRNIVSLHGYALSP 684 (943)
Q Consensus 611 ~~~~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~-----~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~ 684 (943)
+....++|+..+.||+|+||+||+|.++ +++.||+|++... .....+.+.+|+++++.++||||+++++++.+.
T Consensus 21 ~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~ 100 (345)
T 3hko_A 21 LLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDE 100 (345)
T ss_dssp HHHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEECS
T ss_pred hhhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhccC
Confidence 4456789999999999999999999975 5788999988543 244567899999999999999999999999999
Q ss_pred CcceEEEEEccCCChhhhccCCC-------------------------------------CCccCCHHHHHHHHHHHHHH
Q 002278 685 YGNLLFYDYMVNGSLWDLLHGPS-------------------------------------KKVKLDWETRLKIAVGAAQG 727 (943)
Q Consensus 685 ~~~~lv~e~~~~g~L~~~l~~~~-------------------------------------~~~~l~~~~~~~i~~~i~~~ 727 (943)
+..++||||+++|+|.+++.... ....+++..+..++.|++.|
T Consensus 101 ~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~ 180 (345)
T 3hko_A 101 QYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSA 180 (345)
T ss_dssp SEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHH
Confidence 99999999999999999985100 01234677888999999999
Q ss_pred HHHhhhCCCCCeEecCCCCccEEECCCC--ceeecccccccccCCCC---CceeeeEecccceeCcccccc--CCCCCcc
Q 002278 728 LAYLHHDCNPRIIHRDVKSSNILIDENF--DAHLSDFGIARCIPTAM---PHASTFVLGTIGYIDPEYAHT--SRLNEKS 800 (943)
Q Consensus 728 l~~LH~~~~~~ivH~Dlkp~Nill~~~~--~~kl~DFGla~~~~~~~---~~~~~~~~gt~~y~aPE~~~~--~~~~~~~ 800 (943)
|+|||+. +|+||||||+||+++.++ .+||+|||+++.+.... ........||+.|+|||++.+ ..++.++
T Consensus 181 l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~ 257 (345)
T 3hko_A 181 LHYLHNQ---GICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYGPKC 257 (345)
T ss_dssp HHHHHHT---TEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHHTCSSSCCCTHH
T ss_pred HHHHHHC---CccccCCChhhEEEecCCCceEEEeeccccccccccCccccccccccCCCccccCchhhccCCCCCCcHH
Confidence 9999999 999999999999998766 89999999998653321 122344569999999999875 6789999
Q ss_pred hhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHH
Q 002278 801 DVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEV 880 (943)
Q Consensus 801 DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el 880 (943)
|||||||++|||++|+.||.+......................+.+ ...+.+++..|++.||++|||+.++
T Consensus 258 DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~li~~~l~~~p~~Rps~~~~ 328 (345)
T 3hko_A 258 DAWSAGVLLHLLLMGAVPFPGVNDADTISQVLNKKLCFENPNYNVL---------SPLARDLLSNLLNRNVDERFDAMRA 328 (345)
T ss_dssp HHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCTTSGGGGGS---------CHHHHHHHHHHSCSCTTTSCCHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCChHHHHHHHHhcccccCCcccccC---------CHHHHHHHHHHcCCChhHCCCHHHH
Confidence 9999999999999999999877665555444433322222111111 2467789999999999999999999
Q ss_pred HHHHh
Q 002278 881 ARVLV 885 (943)
Q Consensus 881 ~~~L~ 885 (943)
+++-+
T Consensus 329 l~hp~ 333 (345)
T 3hko_A 329 LQHPW 333 (345)
T ss_dssp HHSHH
T ss_pred hcChh
Confidence 99765
No 104
>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*
Probab=100.00 E-value=9.8e-40 Score=361.43 Aligned_cols=251 Identities=20% Similarity=0.282 Sum_probs=204.3
Q ss_pred hhccccceEEeeeceEEEEEEEec-CCceEEEEEecccCc---ccHHHHHHHHHHHhcC-CCCCcceeeeEEecCCcceE
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYP---HNLREFETELETIGSI-RHRNIVSLHGYALSPYGNLL 689 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~l 689 (943)
.++|+..+.||+|+||.||+|+.+ +++.||+|++.+... ...+.+.+|.++++++ +||||+++++++.+....++
T Consensus 8 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~l 87 (345)
T 3a8x_A 8 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFF 87 (345)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEE
T ss_pred hhheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEEE
Confidence 467999999999999999999986 478899999975432 2345678899999887 89999999999999999999
Q ss_pred EEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccC
Q 002278 690 FYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIP 769 (943)
Q Consensus 690 v~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~ 769 (943)
||||+++|+|.+++. ....+++..+..++.|++.||+|||++ +|+||||||+||+++.++++||+|||+++...
T Consensus 88 v~e~~~gg~L~~~l~---~~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~DFG~a~~~~ 161 (345)
T 3a8x_A 88 VIEYVNGGDLMFHMQ---RQRKLPEEHARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGL 161 (345)
T ss_dssp EECCCCSCBHHHHHH---HHSSCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCGGGCBCSC
T ss_pred EEeCCCCCcHHHHHH---HcCCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEECCCCCEEEEecccccccc
Confidence 999999999999986 345699999999999999999999999 99999999999999999999999999998643
Q ss_pred CCCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCcc--------HHHHHH-Hhcccccccc
Q 002278 770 TAMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESN--------LHQLIM-SKADDNTVME 840 (943)
Q Consensus 770 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~--------~~~~~~-~~~~~~~~~~ 840 (943)
.... .....+||+.|+|||++.+..++.++||||+||++|||++|+.||..... ...... +......+
T Consensus 162 ~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~i~~~~~~~-- 238 (345)
T 3a8x_A 162 RPGD-TTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVILEKQIRI-- 238 (345)
T ss_dssp CTTC-CBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTTTC-------CHHHHHHHHHHCCCCC--
T ss_pred CCCC-cccccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCCcCCcccccccccccHHHHHHHHHcCCCCC--
Confidence 2222 23345699999999999999999999999999999999999999964211 111111 11111111
Q ss_pred ccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCH------HHHHHHHh
Q 002278 841 AVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTM------QEVARVLV 885 (943)
Q Consensus 841 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~------~el~~~L~ 885 (943)
++.+ ...+.+++.+||+.||++||++ .++++|-+
T Consensus 239 --p~~~---------s~~~~~li~~lL~~dP~~R~~~~~~~~~~~i~~hp~ 278 (345)
T 3a8x_A 239 --PRSL---------SVKAASVLKSFLNKDPKERLGCHPQTGFADIQGHPF 278 (345)
T ss_dssp --CTTS---------CHHHHHHHHHHTCSSTTTSTTCCTTTHHHHHHTSGG
T ss_pred --CCCC---------CHHHHHHHHHHhcCCHhHCCCCCCcCCHHHHhcCCc
Confidence 1111 1456789999999999999985 78887754
No 105
>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}
Probab=100.00 E-value=4.4e-39 Score=353.59 Aligned_cols=270 Identities=19% Similarity=0.245 Sum_probs=212.5
Q ss_pred hhccccceEEeeeceEEEEEEEecC-CceEEEEEecccC-cccHHHHHHHHHHHhcCCCCCcceeeeEEecCC--cceEE
Q 002278 615 TENLSEKYIVGYGASSTVYKCALKN-SRPIAVKKLYNQY-PHNLREFETELETIGSIRHRNIVSLHGYALSPY--GNLLF 690 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~--~~~lv 690 (943)
.++|...+.||+|+||+||+|.+.. ++.||||++.... ....+.+.+|++++++++||||+++++++.... ..++|
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv 87 (319)
T 4euu_A 8 NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLI 87 (319)
T ss_dssp SEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEE
T ss_pred CCCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEEEE
Confidence 4679999999999999999999874 8899999987543 345677889999999999999999999998765 66899
Q ss_pred EEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEE----CCCCceeeccccccc
Q 002278 691 YDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILI----DENFDAHLSDFGIAR 766 (943)
Q Consensus 691 ~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill----~~~~~~kl~DFGla~ 766 (943)
|||+++|+|.+++........+++.+++.++.|++.||+|||+. +|+||||||+||++ +.++.+||+|||+++
T Consensus 88 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~a~ 164 (319)
T 4euu_A 88 MEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLREN---GIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAAR 164 (319)
T ss_dssp EECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEECTTSCEEEEECCCTTCE
T ss_pred EeCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEEeccCCCCceEEEccCCCce
Confidence 99999999999997544444599999999999999999999999 99999999999999 788889999999998
Q ss_pred ccCCCCCceeeeEecccceeCccccc--------cCCCCCcchhhhHHHHHHHHHhCCCCCCCCcc----HHHHHHHhcc
Q 002278 767 CIPTAMPHASTFVLGTIGYIDPEYAH--------TSRLNEKSDVYSFGIVLLEILTGKKAVDNESN----LHQLIMSKAD 834 (943)
Q Consensus 767 ~~~~~~~~~~~~~~gt~~y~aPE~~~--------~~~~~~~~DvwSlGvil~elltG~~p~~~~~~----~~~~~~~~~~ 834 (943)
........ ....||+.|+|||++. +..++.++|||||||++|||+||+.||..... ..........
T Consensus 165 ~~~~~~~~--~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~ 242 (319)
T 4euu_A 165 ELEDDEQF--VSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITG 242 (319)
T ss_dssp ECCTTCCB--CCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTTCGGGCHHHHHHHHHH
T ss_pred ecCCCCce--eecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCccchhHHHHHHHhcC
Confidence 77544322 2345999999999876 56789999999999999999999999963221 2222222111
Q ss_pred ccc-ccc----------ccCccccc-CccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCC
Q 002278 835 DNT-VME----------AVDPEVSV-TCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLP 889 (943)
Q Consensus 835 ~~~-~~~----------~~~~~~~~-~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~ 889 (943)
... ... ...+.++. ..........+.+++..||+.||++|||++|++++......
T Consensus 243 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~~R~s~~ell~h~~d~~~ 309 (319)
T 4euu_A 243 KPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDILH 309 (319)
T ss_dssp CCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHHTC
T ss_pred CCcccchhhhcccCCccccCccCCcccccchhHHHHhHHHHHHhccCChhhhccHHHhhhccHHHhh
Confidence 110 000 00001111 11233556678899999999999999999999999876543
No 106
>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.9e-40 Score=364.99 Aligned_cols=251 Identities=22% Similarity=0.306 Sum_probs=205.1
Q ss_pred hhccccceEEeeeceEEEEEEEec-CCceEEEEEecccC---cccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEE
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQY---PHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLF 690 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 690 (943)
.++|...+.||+|+||.||+|.+. +++.||+|++.... ......+.+|+++++.++||||+++++++..+...++|
T Consensus 8 i~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~lv 87 (336)
T 3h4j_B 8 IGPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVMV 87 (336)
T ss_dssp ETTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred cCCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence 468999999999999999999974 67899999986431 23346789999999999999999999999999999999
Q ss_pred EEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccCC
Q 002278 691 YDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIPT 770 (943)
Q Consensus 691 ~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~~ 770 (943)
|||+ +|+|.+++. ....+++.++..++.|++.||+|||+. +|+||||||+||++++++.+||+|||+++....
T Consensus 88 ~E~~-~g~l~~~l~---~~~~l~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kl~DFG~s~~~~~ 160 (336)
T 3h4j_B 88 IEYA-GGELFDYIV---EKKRMTEDEGRRFFQQIICAIEYCHRH---KIVHRDLKPENLLLDDNLNVKIADFGLSNIMTD 160 (336)
T ss_dssp ECCC-CEEHHHHHH---HHCSCCHHHHHHHHHHHHHHHHHHHHH---TCCCCCCSTTTEEECTTCCEEECCSSCTBTTTT
T ss_pred EECC-CCcHHHHHH---HcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCchhhEEEcCCCCEEEEEeccceeccC
Confidence 9999 789999886 345699999999999999999999999 999999999999999999999999999987654
Q ss_pred CCCceeeeEecccceeCccccccCCC-CCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCcccccC
Q 002278 771 AMPHASTFVLGTIGYIDPEYAHTSRL-NEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPEVSVT 849 (943)
Q Consensus 771 ~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (943)
... ....+||+.|+|||++.+..+ ++++||||+||++|+|++|+.||.+....... ... ......++..
T Consensus 161 ~~~--~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~~~~-------~~i-~~~~~~~p~~ 230 (336)
T 3h4j_B 161 GNF--LKTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFIPNLF-------KKV-NSCVYVMPDF 230 (336)
T ss_dssp SBT--TCCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCSSSTTCB-------CCC-CSSCCCCCTT
T ss_pred Ccc--cccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCccHHHHH-------HHH-HcCCCCCccc
Confidence 322 223469999999999998776 78999999999999999999999764321100 000 0000111111
Q ss_pred ccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhc
Q 002278 850 CVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSL 887 (943)
Q Consensus 850 ~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~ 887 (943)
....+.+++..|++.||++|||+.|++++-+-.
T Consensus 231 -----~s~~~~~li~~~L~~dP~~Rpt~~eil~hp~~~ 263 (336)
T 3h4j_B 231 -----LSPGAQSLIRRMIVADPMQRITIQEIRRDPWFN 263 (336)
T ss_dssp -----SCHHHHHHHHTTSCSSGGGSCCHHHHTTCHHHH
T ss_pred -----CCHHHHHHHHHHcCCChhHCcCHHHHHhChhhc
Confidence 124567899999999999999999999987754
No 107
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Probab=100.00 E-value=1.4e-39 Score=374.47 Aligned_cols=261 Identities=28% Similarity=0.396 Sum_probs=209.7
Q ss_pred HhhccccceEEeeeceEEEEEEEecCCceEEEEEecccCcccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEEEEE
Q 002278 614 STENLSEKYIVGYGASSTVYKCALKNSRPIAVKKLYNQYPHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLFYDY 693 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 693 (943)
..++|+..+.||+|+||.||+|.++.+..||||++.... ...+.+.+|++++++++||||+++++++.+ ...++||||
T Consensus 182 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~~iv~e~ 259 (452)
T 1fmk_A 182 PRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTEY 259 (452)
T ss_dssp CGGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEECC
T ss_pred ChhHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCC-CCHHHHHHHHHHHHhCCCCCEeeEEEEEcC-CceEEEehh
Confidence 456889999999999999999999888889999987543 346789999999999999999999999876 678999999
Q ss_pred ccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccCCCCC
Q 002278 694 MVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIPTAMP 773 (943)
Q Consensus 694 ~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~~~~~ 773 (943)
+++|+|.+++... ....+++.++..++.|++.||+|||++ +|+||||||+||++++++.+||+|||+++.......
T Consensus 260 ~~~gsL~~~l~~~-~~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~ 335 (452)
T 1fmk_A 260 MSKGSLLDFLKGE-TGKYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIEDNEY 335 (452)
T ss_dssp CTTCBHHHHHSHH-HHTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCCTTC-------
T ss_pred hcCCCHHHHHHhc-CCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChhhEEECCCCCEEECCCccceecCCCce
Confidence 9999999999621 123589999999999999999999999 999999999999999999999999999987654433
Q ss_pred ceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHh-CCCCCCCCccHHHHHHHhccccccccccCcccccCccC
Q 002278 774 HASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILT-GKKAVDNESNLHQLIMSKADDNTVMEAVDPEVSVTCVD 852 (943)
Q Consensus 774 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 852 (943)
.......+++.|+|||++.+..++.++|||||||++|||+| |+.||.+............. ... ..++.
T Consensus 336 ~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~~~~~i~~~-~~~--~~~~~------- 405 (452)
T 1fmk_A 336 TARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERG-YRM--PCPPE------- 405 (452)
T ss_dssp -------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTT-CCC--CCCTT-------
T ss_pred ecccCCcccccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcC-CCC--CCCCC-------
Confidence 33334457889999999999999999999999999999999 99999876654433222211 110 01111
Q ss_pred HHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCCCCC
Q 002278 853 LSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLPAPP 892 (943)
Q Consensus 853 ~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~~~~ 892 (943)
....+.+++..||+.||++|||+.++++.|+.+.....
T Consensus 406 --~~~~l~~li~~cl~~dP~~Rpt~~~l~~~L~~~~~~~~ 443 (452)
T 1fmk_A 406 --CPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTE 443 (452)
T ss_dssp --SCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTTTSCSC
T ss_pred --CCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhccCC
Confidence 12467789999999999999999999999998876543
No 108
>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}
Probab=100.00 E-value=1.4e-39 Score=363.75 Aligned_cols=249 Identities=23% Similarity=0.322 Sum_probs=205.1
Q ss_pred hhccccceEEeeeceEEEEEEEec-CCceEEEEEecccC---cccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEE
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQY---PHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLF 690 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 690 (943)
.++|+..+.||+|+||.||+|..+ +++.||+|++.... ....+.+.+|+++++.++|||||++++++.+....++|
T Consensus 14 ~~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~lv 93 (384)
T 4fr4_A 14 FDHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFMV 93 (384)
T ss_dssp GGGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred hHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEE
Confidence 467999999999999999999976 47889999986432 34557788999999999999999999999999999999
Q ss_pred EEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccCC
Q 002278 691 YDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIPT 770 (943)
Q Consensus 691 ~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~~ 770 (943)
|||+.+|+|.+++. ....+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++....
T Consensus 94 ~e~~~gg~L~~~l~---~~~~l~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~ 167 (384)
T 4fr4_A 94 VDLLLGGDLRYHLQ---QNVHFKEETVKLFICELVMALDYLQNQ---RIIHRDMKPDNILLDEHGHVHITDFNIAAMLPR 167 (384)
T ss_dssp ECCCTTEEHHHHHH---TTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECCT
T ss_pred EecCCCCcHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCcHHHeEECCCCCEEEeccceeeeccC
Confidence 99999999999997 345699999999999999999999999 999999999999999999999999999987654
Q ss_pred CCCceeeeEecccceeCcccccc---CCCCCcchhhhHHHHHHHHHhCCCCCCCCc--cHHHHHHHh-ccccccccccCc
Q 002278 771 AMPHASTFVLGTIGYIDPEYAHT---SRLNEKSDVYSFGIVLLEILTGKKAVDNES--NLHQLIMSK-ADDNTVMEAVDP 844 (943)
Q Consensus 771 ~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~~DvwSlGvil~elltG~~p~~~~~--~~~~~~~~~-~~~~~~~~~~~~ 844 (943)
.. ......||+.|+|||++.+ ..++.++|||||||++|||++|+.||.... ......... ......+ +
T Consensus 168 ~~--~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~~~~~~~~~~~~~~~~~p----~ 241 (384)
T 4fr4_A 168 ET--QITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSSTSSKEIVHTFETTVVTYP----S 241 (384)
T ss_dssp TC--CBCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCCCTTSCHHHHHHHHHHCCCCCC----T
T ss_pred CC--ceeccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCCCCCCccHHHHHHHHhhcccCCC----C
Confidence 32 2234569999999999874 458999999999999999999999997432 222222221 1111111 1
Q ss_pred ccccCccCHHHHHHHHHHHHHccCCCCCCCCC-HHHHHHHH
Q 002278 845 EVSVTCVDLSAVRKTFQLALLCTKRYPSERPT-MQEVARVL 884 (943)
Q Consensus 845 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt-~~el~~~L 884 (943)
.+ ...+.+++..||+.||++||+ +.++.+|-
T Consensus 242 ~~---------s~~~~~li~~lL~~dP~~R~s~~~~l~~hp 273 (384)
T 4fr4_A 242 AW---------SQEMVSLLKKLLEPNPDQRFSQLSDVQNFP 273 (384)
T ss_dssp TS---------CHHHHHHHHHHSCSSGGGSCCSHHHHHTSG
T ss_pred cC---------CHHHHHHHHHHhcCCHhHhcccHHHHHcCh
Confidence 11 146778999999999999998 88887654
No 109
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=100.00 E-value=1.2e-39 Score=348.32 Aligned_cols=257 Identities=26% Similarity=0.360 Sum_probs=212.9
Q ss_pred hhccccceEEeeeceEEEEEEEecCCceEEEEEecccCcccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEEEEEc
Q 002278 615 TENLSEKYIVGYGASSTVYKCALKNSRPIAVKKLYNQYPHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLFYDYM 694 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 694 (943)
.++|+..+.||+|+||.||+|.+.+++.||+|++.... ...+.+.+|+++++.++||||+++++++.+.+..++||||+
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~ 85 (267)
T 3t9t_A 7 PSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGA-MSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTEFM 85 (267)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTT-BCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEECCC
T ss_pred hhheeeeeEecCCCceeEEEEEecCCCeEEEEEccccC-CCHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEEEeCC
Confidence 46789999999999999999999888899999987543 34578999999999999999999999999999999999999
Q ss_pred cCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccCCCCCc
Q 002278 695 VNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIPTAMPH 774 (943)
Q Consensus 695 ~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~~~~~~ 774 (943)
++++|.+++.. ....+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++........
T Consensus 86 ~~~~L~~~~~~--~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~~~ 160 (267)
T 3t9t_A 86 EHGCLSDYLRT--QRGLFAAETLLGMCLDVCEGMAYLEEA---CVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYT 160 (267)
T ss_dssp TTCBHHHHHHH--TTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECGGGCEEECCTTGGGGBCCHHHH
T ss_pred CCCcHHHHHhh--CcccCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCchheEEECCCCCEEEccccccccccccccc
Confidence 99999999863 234689999999999999999999999 9999999999999999999999999999876432211
Q ss_pred eeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHh-CCCCCCCCccHHHHHHHhccccccccccCcccccCccCH
Q 002278 775 ASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILT-GKKAVDNESNLHQLIMSKADDNTVMEAVDPEVSVTCVDL 853 (943)
Q Consensus 775 ~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 853 (943)
......|++.|+|||++.+..++.++||||+|+++|||++ |+.||.................. .....
T Consensus 161 ~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~i~~~~~~---~~~~~-------- 229 (267)
T 3t9t_A 161 SSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSNSEVVEDISTGFRL---YKPRL-------- 229 (267)
T ss_dssp STTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTTCCC---CCCTT--------
T ss_pred ccccccccccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCCCHHHHHHHHhcCCcC---CCCcc--------
Confidence 1222346789999999999999999999999999999999 89999876544333222221111 00111
Q ss_pred HHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCC
Q 002278 854 SAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLP 889 (943)
Q Consensus 854 ~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~ 889 (943)
....+.+++..||+.||++|||+.+++++|+.+..
T Consensus 230 -~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~ 264 (267)
T 3t9t_A 230 -ASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIAE 264 (267)
T ss_dssp -SCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred -CcHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence 12467789999999999999999999999987643
No 110
>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*
Probab=100.00 E-value=1.2e-39 Score=357.54 Aligned_cols=267 Identities=22% Similarity=0.258 Sum_probs=195.6
Q ss_pred HhhccccceEEeeeceEEEEEEEec-CCceEEEEEecccC-cccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEEE
Q 002278 614 STENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQY-PHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLFY 691 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 691 (943)
..++|+..+.||+|+||+||+|..+ +++.||+|++.... ....+.+.+|+++++.++||||+++++++.+++..++||
T Consensus 3 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 82 (317)
T 2pmi_A 3 SSSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHTENKLTLVF 82 (317)
T ss_dssp ----------------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEEEE
T ss_pred cccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEEEE
Confidence 3468899999999999999999976 57899999986543 334467889999999999999999999999999999999
Q ss_pred EEccCCChhhhccCC---CCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeeccccccccc
Q 002278 692 DYMVNGSLWDLLHGP---SKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCI 768 (943)
Q Consensus 692 e~~~~g~L~~~l~~~---~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~ 768 (943)
||++ |+|.+++... .....+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++..
T Consensus 83 e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~ 158 (317)
T 2pmi_A 83 EFMD-NDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHEN---KILHRDLKPQNLLINKRGQLKLGDFGLARAF 158 (317)
T ss_dssp ECCC-CBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCSSCEET
T ss_pred EecC-CCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCChHHeEEcCCCCEEECcCccceec
Confidence 9997 6999887521 1224589999999999999999999999 9999999999999999999999999999876
Q ss_pred CCCCCceeeeEecccceeCcccccc-CCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCccc-
Q 002278 769 PTAMPHASTFVLGTIGYIDPEYAHT-SRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPEV- 846 (943)
Q Consensus 769 ~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 846 (943)
...... .....||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+..............+...+..++..
T Consensus 159 ~~~~~~-~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 237 (317)
T 2pmi_A 159 GIPVNT-FSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGTNDEEQLKLIFDIMGTPNESLWPSVT 237 (317)
T ss_dssp TSCCCC-CCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCTTTCGGGG
T ss_pred CCCccc-CCCCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCChhHhhhhh
Confidence 533222 223458999999999876 46899999999999999999999999877665544433222111111111110
Q ss_pred ---------ccC-----------ccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 002278 847 ---------SVT-----------CVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLV 885 (943)
Q Consensus 847 ---------~~~-----------~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~ 885 (943)
... .........+.+++..||+.||++|||+.|++++-+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~hp~ 296 (317)
T 2pmi_A 238 KLPKYNPNIQQRPPRDLRQVLQPHTKEPLDGNLMDFLHGLLQLNPDMRLSAKQALHHPW 296 (317)
T ss_dssp GCTTCCTTCCCCCCCCSHHHHGGGCSSCCCHHHHHHHHHHSCSSGGGSCCHHHHTTSGG
T ss_pred hhhhcccccccccchhHHHhhcccccccCCHHHHHHHHHHCCCCcccCCCHHHHhCChh
Confidence 000 000011246789999999999999999999998754
No 111
>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A
Probab=100.00 E-value=2.7e-39 Score=350.51 Aligned_cols=263 Identities=21% Similarity=0.240 Sum_probs=202.8
Q ss_pred hccccceEEeeeceEEEEEEEec-CCceEEEEEecccC--cccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEEEE
Q 002278 616 ENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQY--PHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLFYD 692 (943)
Q Consensus 616 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 692 (943)
++|+..+.||+|+||+||+|.++ +++.||+|++.... ......+.+|++++++++||||+++++++.++...++|||
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 81 (292)
T 3o0g_A 2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE 81 (292)
T ss_dssp CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEEEe
Confidence 57899999999999999999986 57889999986543 2334678899999999999999999999999999999999
Q ss_pred EccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccCCCC
Q 002278 693 YMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIPTAM 772 (943)
Q Consensus 693 ~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~~~~ 772 (943)
|+++ ++.+.+.. ....+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++......
T Consensus 82 ~~~~-~l~~~~~~--~~~~l~~~~~~~~~~ql~~~l~~lH~~---~ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~ 155 (292)
T 3o0g_A 82 FCDQ-DLKKYFDS--CNGDLDPEIVKSFLFQLLKGLGFCHSR---NVLHRDLKPQNLLINRNGELKLANFGLARAFGIPV 155 (292)
T ss_dssp CCSE-EHHHHHHH--TTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECCSCC
T ss_pred cCCC-CHHHHHHh--CCCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEeecccceecCCcc
Confidence 9976 55554432 345699999999999999999999999 99999999999999999999999999998765432
Q ss_pred CceeeeEecccceeCccccccCC-CCCcchhhhHHHHHHHHHhCCCCCCCCccH-HHHHHHhccccccccccCccccc--
Q 002278 773 PHASTFVLGTIGYIDPEYAHTSR-LNEKSDVYSFGIVLLEILTGKKAVDNESNL-HQLIMSKADDNTVMEAVDPEVSV-- 848 (943)
Q Consensus 773 ~~~~~~~~gt~~y~aPE~~~~~~-~~~~~DvwSlGvil~elltG~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-- 848 (943)
. ......||+.|+|||++.+.. ++.++||||+||++|||++|..||...... ..........+......++....
T Consensus 156 ~-~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 234 (292)
T 3o0g_A 156 R-CYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLP 234 (292)
T ss_dssp S-CCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHHHHHHCCCCTTTCTTGGGST
T ss_pred c-cccCCccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHhCCCChhhhhhhcccc
Confidence 2 223346899999999998765 899999999999999999988886433333 32222222111111111100000
Q ss_pred --------------CccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 002278 849 --------------TCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLV 885 (943)
Q Consensus 849 --------------~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~ 885 (943)
..........+.+++..|++.||++|||+.|+++|-+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~ 285 (292)
T 3o0g_A 235 DYKPYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQHPY 285 (292)
T ss_dssp TCCCCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGG
T ss_pred cccccccccCCcchhhcccccChHHHHHHHHHhccChhhCCCHHHHhcCcc
Confidence 0000012246678999999999999999999999754
No 112
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=100.00 E-value=1.8e-39 Score=360.67 Aligned_cols=264 Identities=26% Similarity=0.393 Sum_probs=213.7
Q ss_pred HhhccccceEEeeeceEEEEEEEecC------CceEEEEEecccC-cccHHHHHHHHHHHhcCCCCCcceeeeEEecCCc
Q 002278 614 STENLSEKYIVGYGASSTVYKCALKN------SRPIAVKKLYNQY-PHNLREFETELETIGSIRHRNIVSLHGYALSPYG 686 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~~------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 686 (943)
..++|+..+.||+|+||.||+|.+.. ++.||+|++.... ....+.+.+|+++++.++||||+++++++.+.+.
T Consensus 45 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~ 124 (343)
T 1luf_A 45 PRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAVGKP 124 (343)
T ss_dssp CGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSS
T ss_pred cHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEccCCc
Confidence 56789999999999999999999863 3789999987543 3345678999999999999999999999999999
Q ss_pred ceEEEEEccCCChhhhccCCCC---------------------CccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCC
Q 002278 687 NLLFYDYMVNGSLWDLLHGPSK---------------------KVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVK 745 (943)
Q Consensus 687 ~~lv~e~~~~g~L~~~l~~~~~---------------------~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk 745 (943)
.++||||+++|+|.+++..... ...+++.+++.++.|++.||+|||++ +|+|||||
T Consensus 125 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlk 201 (343)
T 1luf_A 125 MCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSER---KFVHRDLA 201 (343)
T ss_dssp CEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCS
T ss_pred eEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCC
Confidence 9999999999999999864221 25689999999999999999999999 99999999
Q ss_pred CccEEECCCCceeecccccccccCCCCC-ceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHh-CCCCCCCCc
Q 002278 746 SSNILIDENFDAHLSDFGIARCIPTAMP-HASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILT-GKKAVDNES 823 (943)
Q Consensus 746 p~Nill~~~~~~kl~DFGla~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-G~~p~~~~~ 823 (943)
|+||+++.++.+||+|||+++....... .......||+.|+|||++.+..++.++|||||||++|||+| |+.||.+..
T Consensus 202 p~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~ 281 (343)
T 1luf_A 202 TRNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMA 281 (343)
T ss_dssp GGGEEECGGGCEEECCCSCHHHHTGGGCBC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSC
T ss_pred cceEEECCCCeEEEeecCCCcccccCccccccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHHhcCCCcCCCCC
Confidence 9999999999999999999986643221 12233457899999999999999999999999999999999 999998765
Q ss_pred cHHHHHHHhccccccccccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCCCCC
Q 002278 824 NLHQLIMSKADDNTVMEAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLPAPP 892 (943)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~~~~ 892 (943)
.............. ...+. ....+.+++..||+.||++|||+.+++++|+.+.....
T Consensus 282 ~~~~~~~~~~~~~~---~~~~~---------~~~~l~~li~~~l~~~p~~Rps~~~~~~~L~~~~~~~~ 338 (343)
T 1luf_A 282 HEEVIYYVRDGNIL---ACPEN---------CPLELYNLMRLCWSKLPADRPSFCSIHRILQRMCERAE 338 (343)
T ss_dssp HHHHHHHHHTTCCC---CCCTT---------CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC---
T ss_pred hHHHHHHHhCCCcC---CCCCC---------CCHHHHHHHHHHcccCcccCCCHHHHHHHHHHHHhhhh
Confidence 54333222221110 11111 12467889999999999999999999999998876543
No 113
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*
Probab=100.00 E-value=1.4e-39 Score=350.58 Aligned_cols=257 Identities=25% Similarity=0.342 Sum_probs=198.1
Q ss_pred HhhccccceEEeeeceEEEEEEEecC----CceEEEEEecccC-cccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcce
Q 002278 614 STENLSEKYIVGYGASSTVYKCALKN----SRPIAVKKLYNQY-PHNLREFETELETIGSIRHRNIVSLHGYALSPYGNL 688 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~~----~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 688 (943)
..++|+..+.||+|+||.||+|.+.. +..||+|++.... ....+.+.+|+.+++.++||||+++++++. ++..+
T Consensus 13 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~ 91 (281)
T 1mp8_A 13 QRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVW 91 (281)
T ss_dssp CGGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-SSSCE
T ss_pred ehHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEEc-cCccE
Confidence 35689999999999999999999753 3568999886543 334567889999999999999999999984 46789
Q ss_pred EEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeeccccccccc
Q 002278 689 LFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCI 768 (943)
Q Consensus 689 lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~ 768 (943)
+||||+++|+|.+++.. ....+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++..
T Consensus 92 lv~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~ 166 (281)
T 1mp8_A 92 IIMELCTLGELRSFLQV--RKYSLDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLSRYM 166 (281)
T ss_dssp EEEECCTTEEHHHHHHH--TTTTSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECC-------
T ss_pred EEEecCCCCCHHHHHHh--cCCCCCHHHHHHHHHHHHHHHHHHHhC---CeecccccHHHEEECCCCCEEECcccccccc
Confidence 99999999999999963 234689999999999999999999999 9999999999999999999999999999877
Q ss_pred CCCCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHh-CCCCCCCCccHHHHHHHhccccccccccCcccc
Q 002278 769 PTAMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILT-GKKAVDNESNLHQLIMSKADDNTVMEAVDPEVS 847 (943)
Q Consensus 769 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 847 (943)
............+++.|+|||++.+..++.++|||||||++|||++ |+.||.+................ ...+.+
T Consensus 167 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~~~~~~~~i~~~~~~---~~~~~~- 242 (281)
T 1mp8_A 167 EDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERL---PMPPNC- 242 (281)
T ss_dssp ------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTCCC---CCCTTC-
T ss_pred CcccccccccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCCHHHHHHHHHcCCCC---CCCCCC-
Confidence 5543333334457889999999999999999999999999999997 99999866544333222221110 111111
Q ss_pred cCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcC
Q 002278 848 VTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLL 888 (943)
Q Consensus 848 ~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~ 888 (943)
...+.+++..||+.||++|||+.+++++|+.+.
T Consensus 243 --------~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~ 275 (281)
T 1mp8_A 243 --------PPTLYSLMTKCWAYDPSRRPRFTELKAQLSTIL 275 (281)
T ss_dssp --------CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred --------CHHHHHHHHHHccCChhhCcCHHHHHHHHHHHH
Confidence 246778999999999999999999999998764
No 114
>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...
Probab=100.00 E-value=1.7e-39 Score=349.76 Aligned_cols=250 Identities=26% Similarity=0.378 Sum_probs=207.7
Q ss_pred HhhccccceEEeeeceEEEEEEEecC-CceEEEEEecccC---cccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceE
Q 002278 614 STENLSEKYIVGYGASSTVYKCALKN-SRPIAVKKLYNQY---PHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLL 689 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 689 (943)
+.++|+..+.||+|+||+||+|.++. +..||+|++.... ......+.+|+++++.++||||+++++++.+....++
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l 86 (279)
T 3fdn_A 7 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYL 86 (279)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEE
T ss_pred ecccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEEEE
Confidence 45789999999999999999999764 6789999985432 2335678899999999999999999999999999999
Q ss_pred EEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccC
Q 002278 690 FYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIP 769 (943)
Q Consensus 690 v~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~ 769 (943)
||||+++|+|.+++. ....+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||++....
T Consensus 87 v~e~~~~~~l~~~l~---~~~~~~~~~~~~~~~qi~~~l~~LH~~---~i~H~dlkp~Nili~~~~~~~l~Dfg~~~~~~ 160 (279)
T 3fdn_A 87 ILEYAPLGTVYRELQ---KLSKFDEQRTATYITELANALSYCHSK---RVIHRDIKPENLLLGSAGELKIADFGWSVHAP 160 (279)
T ss_dssp EECCCTTEEHHHHHH---HHSSCCHHHHHHHHHHHHHHHHHHHTT---TCEECCCCGGGEEECTTSCEEECSCCEESCC-
T ss_pred EEecCCCCcHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHhC---CEecccCChHhEEEcCCCCEEEEeccccccCC
Confidence 999999999999986 345689999999999999999999999 99999999999999999999999999997554
Q ss_pred CCCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCcccccC
Q 002278 770 TAMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPEVSVT 849 (943)
Q Consensus 770 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (943)
... .....|++.|+|||++.+..++.++||||+|+++|+|++|+.||...................+...
T Consensus 161 ~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~------- 230 (279)
T 3fdn_A 161 SSR---RTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANTYQETYKRISRVEFTFPDFV------- 230 (279)
T ss_dssp ----------CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCCCCTTS-------
T ss_pred ccc---ccccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCCcHHHHHHHHHhCCCCCCCcC-------
Confidence 322 2334689999999999999999999999999999999999999987665544433333222222111
Q ss_pred ccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 002278 850 CVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLV 885 (943)
Q Consensus 850 ~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~ 885 (943)
...+.+++..||+.||++|||+.|+++|-+
T Consensus 231 ------~~~~~~li~~~l~~~p~~Rps~~e~l~h~~ 260 (279)
T 3fdn_A 231 ------TEGARDLISRLLKHNPSQRPMLREVLEHPW 260 (279)
T ss_dssp ------CHHHHHHHHHHCCSSGGGSCCHHHHHHCHH
T ss_pred ------CHHHHHHHHHHhccChhhCCCHHHHhhCcc
Confidence 145678999999999999999999999865
No 115
>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*
Probab=100.00 E-value=2e-39 Score=353.25 Aligned_cols=257 Identities=25% Similarity=0.374 Sum_probs=202.1
Q ss_pred hhccccceEEeeeceEEEEEEEecCCceEEEEEecccCcccHHHHHHHHHHHhc--CCCCCcceeeeEEecC----Ccce
Q 002278 615 TENLSEKYIVGYGASSTVYKCALKNSRPIAVKKLYNQYPHNLREFETELETIGS--IRHRNIVSLHGYALSP----YGNL 688 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~l~~~~~~~----~~~~ 688 (943)
.++|+..+.||+|+||+||+|++ +++.||||++... ....+.+|.+++.. ++||||+++++++... ...+
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~~~ 82 (301)
T 3q4u_A 7 ARDITLLECVGKGRYGEVWRGSW-QGENVAVKIFSSR---DEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLW 82 (301)
T ss_dssp GGGCEEEEEEEECSSEEEEEEEE-TTEEEEEEEECGG---GHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEEEE
T ss_pred cCcEEEEEeeccCCCcEEEEEEE-CCEEEEEEEeccc---cchhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCceeE
Confidence 56899999999999999999988 5889999998643 34556666666665 7999999999997543 3478
Q ss_pred EEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhh--------hCCCCCeEecCCCCccEEECCCCceeec
Q 002278 689 LFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLH--------HDCNPRIIHRDVKSSNILIDENFDAHLS 760 (943)
Q Consensus 689 lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH--------~~~~~~ivH~Dlkp~Nill~~~~~~kl~ 760 (943)
+||||+++|+|.++++ ...+++..++.++.|++.||+||| +. +|+||||||+||+++.++.+||+
T Consensus 83 lv~e~~~~g~L~~~l~----~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~---~ivH~Dlkp~Nill~~~~~~kl~ 155 (301)
T 3q4u_A 83 LITHYHEMGSLYDYLQ----LTTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKP---AIAHRDLKSKNILVKKNGQCCIA 155 (301)
T ss_dssp EEECCCTTCBHHHHHT----TCCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBC---EEECSCCCGGGEEECTTSCEEEC
T ss_pred EehhhccCCCHHHHHh----hcccCHHHHHHHHHHHHHHHHHHHHhhhhccCCC---CeecCCCChHhEEEcCCCCEEEe
Confidence 9999999999999995 346999999999999999999999 77 99999999999999999999999
Q ss_pred ccccccccCCCCCce---eeeEecccceeCccccccC------CCCCcchhhhHHHHHHHHHhC----------CCCCCC
Q 002278 761 DFGIARCIPTAMPHA---STFVLGTIGYIDPEYAHTS------RLNEKSDVYSFGIVLLEILTG----------KKAVDN 821 (943)
Q Consensus 761 DFGla~~~~~~~~~~---~~~~~gt~~y~aPE~~~~~------~~~~~~DvwSlGvil~elltG----------~~p~~~ 821 (943)
|||+++......... .....||+.|+|||++.+. .++.++|||||||++|||+|| +.||..
T Consensus 156 Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~pf~~ 235 (301)
T 3q4u_A 156 DLGLAVMHSQSTNQLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYD 235 (301)
T ss_dssp CCTTCEEEETTTTEEECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTT
T ss_pred eCCCeeecccccccccccccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCccccccccccccc
Confidence 999998765443322 1223699999999999876 455799999999999999999 888864
Q ss_pred Cc----cHHHHHHHhccccccccccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhc
Q 002278 822 ES----NLHQLIMSKADDNTVMEAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSL 887 (943)
Q Consensus 822 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~ 887 (943)
.. ............. ..+..+...........+.+++..||+.||++|||+.++++.|+.+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i 300 (301)
T 3q4u_A 236 VVPNDPSFEDMRKVVCVDQ-----QRPNIPNRWFSDPTLTSLAKLMKECWYQNPSARLTALRIKKTLTKI 300 (301)
T ss_dssp TSCSSCCHHHHHHHHTTSC-----CCCCCCGGGGGSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHH
T ss_pred cCCCCcchhhhhHHHhccC-----CCCCCChhhccCccHHHHHHHHHHHhhcChhhCCCHHHHHHHHhcc
Confidence 21 2222222211111 1222222222234567889999999999999999999999999864
No 116
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}
Probab=100.00 E-value=1.3e-39 Score=360.13 Aligned_cols=254 Identities=19% Similarity=0.273 Sum_probs=203.5
Q ss_pred HhhccccceEEeeeceEEEEEEEec-CCceEEEEEecccC-cccHHHHHHHHHHHhcCCCCCcceeeeEEecCCc-----
Q 002278 614 STENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQY-PHNLREFETELETIGSIRHRNIVSLHGYALSPYG----- 686 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~----- 686 (943)
..++|+..+.||+|+||.||+|+++ +++.||||++.... ....+.+.+|++++++++||||+++++++.+...
T Consensus 4 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~ 83 (332)
T 3qd2_B 4 YLTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQE 83 (332)
T ss_dssp HHHHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHH
T ss_pred hhhcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhh
Confidence 4578999999999999999999987 68999999986443 3456789999999999999999999999865432
Q ss_pred ----------------------------------------------------ceEEEEEccCCChhhhccCCCCCccCCH
Q 002278 687 ----------------------------------------------------NLLFYDYMVNGSLWDLLHGPSKKVKLDW 714 (943)
Q Consensus 687 ----------------------------------------------------~~lv~e~~~~g~L~~~l~~~~~~~~l~~ 714 (943)
.++||||+++|+|.+++.........++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~ 163 (332)
T 3qd2_B 84 EMDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREH 163 (332)
T ss_dssp HHHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSGGGSCH
T ss_pred hhhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCccchhh
Confidence 6899999999999999987655666788
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccCCCCC-----------ceeeeEeccc
Q 002278 715 ETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIPTAMP-----------HASTFVLGTI 783 (943)
Q Consensus 715 ~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~~~~~-----------~~~~~~~gt~ 783 (943)
..++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++....... .......||+
T Consensus 164 ~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~ 240 (332)
T 3qd2_B 164 GVCLHIFIQIAEAVEFLHSK---GLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTK 240 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC-CG
T ss_pred HHHHHHHHHHHHHHHHHHhC---CeeecCCCcccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccCCCc
Confidence 88999999999999999999 999999999999999999999999999987754421 1122346999
Q ss_pred ceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCcccccCccCHHHHHHHHHHH
Q 002278 784 GYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPEVSVTCVDLSAVRKTFQLA 863 (943)
Q Consensus 784 ~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 863 (943)
.|+|||++.+..++.++||||+||++|||++|..|+..... ...... .... +.. .......+.+++
T Consensus 241 ~y~aPE~~~~~~~~~~~Di~slG~il~el~~~~~~~~~~~~---~~~~~~-~~~~-----~~~-----~~~~~~~~~~li 306 (332)
T 3qd2_B 241 LYMSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQMERVR---IITDVR-NLKF-----PLL-----FTQKYPQEHMMV 306 (332)
T ss_dssp GGSCHHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHHHHHH---HHHHHH-TTCC-----CHH-----HHHHCHHHHHHH
T ss_pred CccChHHhcCCCCcchhhHHHHHHHHHHHHHcCCChhHHHH---HHHHhh-ccCC-----Ccc-----cccCChhHHHHH
Confidence 99999999999999999999999999999999877642211 111111 1110 000 112234567899
Q ss_pred HHccCCCCCCCCCHHHHHHHH
Q 002278 864 LLCTKRYPSERPTMQEVARVL 884 (943)
Q Consensus 864 ~~cl~~dP~~RPt~~el~~~L 884 (943)
..||+.||++|||+.|++++-
T Consensus 307 ~~~l~~~p~~Rps~~~~l~~~ 327 (332)
T 3qd2_B 307 QDMLSPSPTERPEATDIIENA 327 (332)
T ss_dssp HHHHCSSGGGSCCHHHHHHST
T ss_pred HHHccCCCCcCCCHHHHhhch
Confidence 999999999999999999874
No 117
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...
Probab=100.00 E-value=1e-39 Score=359.73 Aligned_cols=258 Identities=22% Similarity=0.345 Sum_probs=203.4
Q ss_pred hhccccceEEeeeceEEEEEEEecC-Cc----eEEEEEecccC-cccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcce
Q 002278 615 TENLSEKYIVGYGASSTVYKCALKN-SR----PIAVKKLYNQY-PHNLREFETELETIGSIRHRNIVSLHGYALSPYGNL 688 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~~-~~----~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 688 (943)
.++|+..+.||+|+||+||+|++.. ++ +||+|.+.... ....+.+.+|++++++++||||+++++++.++ ..+
T Consensus 14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-~~~ 92 (327)
T 3poz_A 14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS-TVQ 92 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEESS-SEE
T ss_pred HHHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecC-CeE
Confidence 4679999999999999999999653 33 46888775432 35567899999999999999999999999875 478
Q ss_pred EEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeeccccccccc
Q 002278 689 LFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCI 768 (943)
Q Consensus 689 lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~ 768 (943)
+|+||+++|+|.+++.. ....+++..++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++..
T Consensus 93 ~v~e~~~~g~L~~~l~~--~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~ 167 (327)
T 3poz_A 93 LITQLMPFGCLLDYVRE--HKDNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLL 167 (327)
T ss_dssp EEEECCTTCBHHHHHHH--STTSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEETTEEEECCTTHHHHH
T ss_pred EEEEecCCCcHHHHHHh--cCCCCCHHHHHHHHHHHHHHHHHHhhC---CeeCCCCChheEEECCCCCEEEccCcceeEc
Confidence 99999999999999863 245689999999999999999999999 9999999999999999999999999999877
Q ss_pred CCCCCc-eeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHh-CCCCCCCCccHHHHHHHhccccccccccCccc
Q 002278 769 PTAMPH-ASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILT-GKKAVDNESNLHQLIMSKADDNTVMEAVDPEV 846 (943)
Q Consensus 769 ~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 846 (943)
...... ......||+.|+|||++.+..++.++|||||||++|||+| |+.||.+............. .... ..+.
T Consensus 168 ~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~-~~~~--~~~~- 243 (327)
T 3poz_A 168 GAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKG-ERLP--QPPI- 243 (327)
T ss_dssp TTTCC-------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTT-CCCC--CCTT-
T ss_pred cCCcccccccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCCCHHHHHHHHHcC-CCCC--CCcc-
Confidence 543322 2233457889999999999999999999999999999999 99999865443222111111 1100 1111
Q ss_pred ccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCCC
Q 002278 847 SVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLPA 890 (943)
Q Consensus 847 ~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~~ 890 (943)
....+.+++..||+.||++||++.+++++|+.+...
T Consensus 244 --------~~~~~~~li~~~l~~~p~~Rps~~ell~~l~~~~~~ 279 (327)
T 3poz_A 244 --------CTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMARD 279 (327)
T ss_dssp --------BCHHHHHHHHHHTCSCGGGSCCHHHHHHHHHHHHTS
T ss_pred --------CCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHhh
Confidence 124677899999999999999999999999877553
No 118
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}
Probab=100.00 E-value=4.6e-40 Score=371.13 Aligned_cols=263 Identities=20% Similarity=0.220 Sum_probs=213.0
Q ss_pred HHHHHHHhhccccceEEeeeceEEEEEEEec-CCceEEEEEecccC---cccHHHHHHHHHHHhcCCCCCcceeeeEEec
Q 002278 608 FDDIMRSTENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQY---PHNLREFETELETIGSIRHRNIVSLHGYALS 683 (943)
Q Consensus 608 ~~~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~ 683 (943)
+.+.....++|+..+.||+|+||+||+|+.+ +++.||+|++.+.. ....+.+.+|++++..++||||+++++++.+
T Consensus 53 ~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~ 132 (412)
T 2vd5_A 53 LKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQD 132 (412)
T ss_dssp HHHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEEC
T ss_pred hhhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEee
Confidence 3444456789999999999999999999986 58899999986432 1223457889999999999999999999999
Q ss_pred CCcceEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccc
Q 002278 684 PYGNLLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFG 763 (943)
Q Consensus 684 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFG 763 (943)
.+..++||||+++|+|.+++.. ....+++..+..++.||+.||+|||+. +|+||||||+||+++.++++||+|||
T Consensus 133 ~~~~~lVmE~~~gg~L~~~l~~--~~~~l~~~~~~~~~~qi~~aL~~LH~~---giiHrDLKp~NILld~~g~vkL~DFG 207 (412)
T 2vd5_A 133 ENYLYLVMEYYVGGDLLTLLSK--FGERIPAEMARFYLAEIVMAIDSVHRL---GYVHRDIKPDNILLDRCGHIRLADFG 207 (412)
T ss_dssp SSEEEEEECCCCSCBHHHHHHH--HSSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCT
T ss_pred CCEEEEEEcCCCCCcHHHHHHh--cCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecccCHHHeeecCCCCEEEeech
Confidence 9999999999999999999963 124689999999999999999999999 99999999999999999999999999
Q ss_pred cccccCCCCCceeeeEecccceeCccccc-------cCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhcccc
Q 002278 764 IARCIPTAMPHASTFVLGTIGYIDPEYAH-------TSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDN 836 (943)
Q Consensus 764 la~~~~~~~~~~~~~~~gt~~y~aPE~~~-------~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~ 836 (943)
+++.............+||+.|+|||++. +..++.++|||||||++|||++|+.||.+.........+.....
T Consensus 208 la~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~~~~~~~~i~~~~~ 287 (412)
T 2vd5_A 208 SCLKLRADGTVRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYADSTAETYGKIVHYKE 287 (412)
T ss_dssp TCEECCTTSCEECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTHHH
T ss_pred hheeccCCCccccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCCCCCCHHHHHHHHHhccc
Confidence 99877554433333457999999999987 35689999999999999999999999988766554444332111
Q ss_pred cc-ccccCcccccCccCHHHHHHHHHHHHHccCCCCCCC---CCHHHHHHHHh
Q 002278 837 TV-MEAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSER---PTMQEVARVLV 885 (943)
Q Consensus 837 ~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~R---Pt~~el~~~L~ 885 (943)
.. ....++.+ ...+.+++++|+. +|++| |++.|+++|-+
T Consensus 288 ~~~~p~~~~~~---------s~~~~dli~~lL~-~p~~Rlgr~~~~ei~~Hpf 330 (412)
T 2vd5_A 288 HLSLPLVDEGV---------PEEARDFIQRLLC-PPETRLGRGGAGDFRTHPF 330 (412)
T ss_dssp HCCCC----CC---------CHHHHHHHHTTSS-CGGGCTTTTTHHHHHTSGG
T ss_pred CcCCCccccCC---------CHHHHHHHHHHcC-ChhhcCCCCCHHHHhcCCC
Confidence 10 00011112 1466789999999 99998 69999999865
No 119
>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*
Probab=100.00 E-value=5.1e-39 Score=346.94 Aligned_cols=255 Identities=22% Similarity=0.300 Sum_probs=211.5
Q ss_pred hhccccceEEeeeceEEEEEEEec-CCceEEEEEecccC--cccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEEE
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQY--PHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLFY 691 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 691 (943)
.++|+..+.||+|+||.||+|.++ +++.||+|++.... ....+.+.+|++++++++||||+++++++.++...++||
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~ 84 (284)
T 3kk8_A 5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF 84 (284)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEEE
Confidence 468999999999999999999976 57899999986543 334567889999999999999999999999999999999
Q ss_pred EEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCc---eeeccccccccc
Q 002278 692 DYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFD---AHLSDFGIARCI 768 (943)
Q Consensus 692 e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~---~kl~DFGla~~~ 768 (943)
||+++|+|.+.+. ....+++..+..++.|++.||+|||+. +|+||||||+||+++.++. +||+|||++...
T Consensus 85 e~~~~~~l~~~~~---~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~~ 158 (284)
T 3kk8_A 85 DLVTGGELFEDIV---AREFYSEADASHCIQQILESIAYCHSN---GIVHRNLKPENLLLASKAKGAAVKLADFGLAIEV 158 (284)
T ss_dssp CCCCSCBHHHHHH---HHSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESSSSTTCCEEECCCTTCEEC
T ss_pred ecCCCCCHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHC---CcCcCCCCHHHEEEecCCCCCcEEEeeceeeEEc
Confidence 9999999998886 345689999999999999999999999 9999999999999986655 999999999876
Q ss_pred CCCCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCccccc
Q 002278 769 PTAMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPEVSV 848 (943)
Q Consensus 769 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 848 (943)
..... .....||+.|+|||++.+..++.++||||+|+++|+|++|+.||.+......................+.+
T Consensus 159 ~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 234 (284)
T 3kk8_A 159 NDSEA--WHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQHRLYAQIKAGAYDYPSPEWDTV-- 234 (284)
T ss_dssp CSSCB--CCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTTTTTTS--
T ss_pred ccCcc--ccCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCCchhHHHHHHHhccccCCchhhccc--
Confidence 54322 22345899999999999999999999999999999999999999877655444443333222222111112
Q ss_pred CccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhh
Q 002278 849 TCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVS 886 (943)
Q Consensus 849 ~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~ 886 (943)
...+.+++..|++.||++|||+.|++++-+-
T Consensus 235 -------~~~~~~li~~~l~~dp~~Rps~~~~l~h~~~ 265 (284)
T 3kk8_A 235 -------TPEAKSLIDSMLTVNPKKRITADQALKVPWI 265 (284)
T ss_dssp -------CHHHHHHHHHHSCSSTTTSCCHHHHTTSHHH
T ss_pred -------CHHHHHHHHHHcccChhhCCCHHHHhcCccc
Confidence 2467789999999999999999999997653
No 120
>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}
Probab=100.00 E-value=2.2e-39 Score=371.95 Aligned_cols=251 Identities=20% Similarity=0.298 Sum_probs=210.8
Q ss_pred hhccccceEEeeeceEEEEEEEec-CCceEEEEEecccC---cccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEE
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQY---PHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLF 690 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 690 (943)
.++|...+.||+|+||.||+|++. +++.||||++.... ....+.+.+|+++++.++||||+++++++......++|
T Consensus 15 ~~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~lv 94 (476)
T 2y94_A 15 IGHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFMV 94 (476)
T ss_dssp ETTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred ecCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence 367899999999999999999986 68999999986432 23456789999999999999999999999999999999
Q ss_pred EEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccCC
Q 002278 691 YDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIPT 770 (943)
Q Consensus 691 ~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~~ 770 (943)
|||+++|+|.+++. ....+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++....
T Consensus 95 ~E~~~gg~L~~~l~---~~~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDLkp~NIll~~~~~vkL~DFG~a~~~~~ 168 (476)
T 2y94_A 95 MEYVSGGELFDYIC---KNGRLDEKESRRLFQQILSGVDYCHRH---MVVHRDLKPENVLLDAHMNAKIADFGLSNMMSD 168 (476)
T ss_dssp EECCSSEEHHHHTT---SSSSCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCSGGGEEECTTCCEEECCCSSCEECCT
T ss_pred EeCCCCCcHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHC---CCCcccccHHHEEEecCCCeEEEeccchhhccc
Confidence 99999999999996 345799999999999999999999999 999999999999999999999999999987654
Q ss_pred CCCceeeeEecccceeCccccccCCC-CCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCcccccC
Q 002278 771 AMPHASTFVLGTIGYIDPEYAHTSRL-NEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPEVSVT 849 (943)
Q Consensus 771 ~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (943)
... ....+||+.|+|||++.+..+ +.++||||+||++|||++|+.||.+.................+.. +
T Consensus 169 ~~~--~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~~~~~~~i~~~~~~~p~~----~--- 239 (476)
T 2y94_A 169 GEF--LRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDHVPTLFKKICDGIFYTPQY----L--- 239 (476)
T ss_dssp TCC--BCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCSSSHHHHHHHHTTCCCCCTT----C---
T ss_pred ccc--ccccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCCCCHHHHHHHHhcCCcCCCcc----C---
Confidence 322 233469999999999988765 689999999999999999999998766544433333222111111 1
Q ss_pred ccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhh
Q 002278 850 CVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVS 886 (943)
Q Consensus 850 ~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~ 886 (943)
...+.+++..||+.||++|||+.++++|-+-
T Consensus 240 ------s~~~~~Li~~~L~~dP~~Rpt~~eil~hp~~ 270 (476)
T 2y94_A 240 ------NPSVISLLKHMLQVDPMKRATIKDIREHEWF 270 (476)
T ss_dssp ------CHHHHHHHHHHTCSSTTTSCCHHHHHTCHHH
T ss_pred ------CHHHHHHHHHHcCCCchhCcCHHHHHhCHHh
Confidence 1356789999999999999999999997653
No 121
>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}
Probab=100.00 E-value=1.3e-39 Score=358.65 Aligned_cols=267 Identities=22% Similarity=0.358 Sum_probs=198.8
Q ss_pred HHhhccccceEEeeeceEEEEEEEecCCc----eEEEEEeccc--CcccHHHHHHHHHHHhcCCCCCcceeeeEEecCCc
Q 002278 613 RSTENLSEKYIVGYGASSTVYKCALKNSR----PIAVKKLYNQ--YPHNLREFETELETIGSIRHRNIVSLHGYALSPYG 686 (943)
Q Consensus 613 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~----~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 686 (943)
...++|+..+.||+|+||+||+|.++... .||||++... .....+.+.+|+++++.++||||+++++++.....
T Consensus 20 i~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 99 (323)
T 3qup_A 20 IPEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRA 99 (323)
T ss_dssp CC---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC--
T ss_pred cChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeecccc
Confidence 34578999999999999999999976432 7999998654 23456789999999999999999999999988766
Q ss_pred c------eEEEEEccCCChhhhccCCC---CCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCce
Q 002278 687 N------LLFYDYMVNGSLWDLLHGPS---KKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDA 757 (943)
Q Consensus 687 ~------~lv~e~~~~g~L~~~l~~~~---~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~ 757 (943)
. ++||||+++|+|.+++.... ....+++.+++.++.|++.||+|||+. +|+||||||+||++++++.+
T Consensus 100 ~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~---~ivH~Dikp~NIli~~~~~~ 176 (323)
T 3qup_A 100 KGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSSR---NFIHRDLAARNCMLAEDMTV 176 (323)
T ss_dssp -----CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTSCE
T ss_pred ccCCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHHcC---CcccCCCCcceEEEcCCCCE
Confidence 5 99999999999999985211 222589999999999999999999999 99999999999999999999
Q ss_pred eecccccccccCCCCC-ceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHh-CCCCCCCCccHHHHHHHhccc
Q 002278 758 HLSDFGIARCIPTAMP-HASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILT-GKKAVDNESNLHQLIMSKADD 835 (943)
Q Consensus 758 kl~DFGla~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-G~~p~~~~~~~~~~~~~~~~~ 835 (943)
||+|||+++....... .......+++.|+|||++.+..++.++|||||||++|||++ |+.||.+..............
T Consensus 177 kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~~~~~~~~ 256 (323)
T 3qup_A 177 CVADFGLSRKIYSGDYYRQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIENAEIYNYLIGGN 256 (323)
T ss_dssp EECCCCC-----------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTC
T ss_pred EEeeccccccccccccccccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCccccChHHHHHHHhcCC
Confidence 9999999987644322 12223457889999999999999999999999999999999 999998765544333322221
Q ss_pred cccccccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCCCCCCc
Q 002278 836 NTVMEAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLPAPPAK 894 (943)
Q Consensus 836 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~~~~~~ 894 (943)
.. ...+.+ ...+.+++..||+.||++|||+.++++.++.+...+...
T Consensus 257 ~~---~~~~~~---------~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~l~~~~~~ 303 (323)
T 3qup_A 257 RL---KQPPEC---------MEEVYDLMYQCWSADPKQRPSFTCLRMELENILGHLSVL 303 (323)
T ss_dssp CC---CCCTTC---------CHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHC----
T ss_pred CC---CCCCcc---------CHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHhhhc
Confidence 11 111111 246789999999999999999999999999887665443
No 122
>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...
Probab=100.00 E-value=1e-39 Score=354.49 Aligned_cols=263 Identities=25% Similarity=0.401 Sum_probs=205.1
Q ss_pred hhccccceEEeeeceEEEEEEEe-----cCCceEEEEEecccCcccHHHHHHHHHHHhcCCCCCcceeeeEEecC--Ccc
Q 002278 615 TENLSEKYIVGYGASSTVYKCAL-----KNSRPIAVKKLYNQYPHNLREFETELETIGSIRHRNIVSLHGYALSP--YGN 687 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~-----~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~--~~~ 687 (943)
.++|+..+.||+|+||+||+|++ .+++.||||++........+.+.+|++++++++||||+++++++... ...
T Consensus 9 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 88 (295)
T 3ugc_A 9 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNL 88 (295)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHHTSC
T ss_pred HHHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCce
Confidence 47899999999999999999984 25789999999876666667899999999999999999999998654 457
Q ss_pred eEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccc
Q 002278 688 LLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARC 767 (943)
Q Consensus 688 ~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~ 767 (943)
++||||+++|+|.+++.. ....+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++.
T Consensus 89 ~lv~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~kl~Dfg~~~~ 163 (295)
T 3ugc_A 89 KLIMEYLPYGSLRDYLQK--HKERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVENENRVKIGDFGLTKV 163 (295)
T ss_dssp EEEEECCTTCBHHHHHHH--CGGGCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCCCSCC-
T ss_pred EEEEEeCCCCCHHHHHHh--cccccCHHHHHHHHHHHHHHHHHHhcC---CcccCCCCHhhEEEcCCCeEEEccCccccc
Confidence 999999999999999963 234599999999999999999999999 999999999999999999999999999987
Q ss_pred cCCCCCc--eeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccc--------
Q 002278 768 IPTAMPH--ASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNT-------- 837 (943)
Q Consensus 768 ~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~-------- 837 (943)
....... ......|+..|+|||++.+..++.++||||||+++|||+||..||...... ..........
T Consensus 164 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 241 (295)
T 3ugc_A 164 LPQDKEFFKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAE--FMRMIGNDKQGQMIVFHL 241 (295)
T ss_dssp ------------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCSHHHH--HHHHHCTTCCTHHHHHHH
T ss_pred ccCCcceeeeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCCChHH--HHhhhcCccccchhHHHH
Confidence 6443221 122234677899999999999999999999999999999999998643211 1110000000
Q ss_pred ---cccccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCC
Q 002278 838 ---VMEAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLP 889 (943)
Q Consensus 838 ---~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~ 889 (943)
.........+. .....+.+++..||+.||++|||+.|+++.|+.+..
T Consensus 242 ~~~~~~~~~~~~~~-----~~~~~l~~li~~~l~~dp~~Rps~~el~~~L~~l~~ 291 (295)
T 3ugc_A 242 IELLKNNGRLPRPD-----GCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRD 291 (295)
T ss_dssp HHHHHTTCCCCCCT-----TCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHhccCcCCCCc-----CcCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHH
Confidence 00000111111 112567899999999999999999999999987654
No 123
>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*
Probab=100.00 E-value=3.7e-39 Score=348.61 Aligned_cols=253 Identities=25% Similarity=0.440 Sum_probs=202.2
Q ss_pred hhccccceEEeeeceEEEEEEEec-CCceEEEEEecccCccc-------HHHHHHHHHHHhcCCCCCcceeeeEEecCCc
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYPHN-------LREFETELETIGSIRHRNIVSLHGYALSPYG 686 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~-------~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 686 (943)
.++|+..+.||+|+||+||+|.+. +++.||+|++....... .+.+.+|++++++++||||+++++++.+..
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~- 96 (287)
T 4f0f_A 18 DNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPP- 96 (287)
T ss_dssp STTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTT-
T ss_pred hccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCC-
Confidence 468999999999999999999975 67899999986543221 167889999999999999999999986654
Q ss_pred ceEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCC--eEecCCCCccEEECCCCc-----eee
Q 002278 687 NLLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPR--IIHRDVKSSNILIDENFD-----AHL 759 (943)
Q Consensus 687 ~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~Dlkp~Nill~~~~~-----~kl 759 (943)
++||||+++|+|.+.+.. ....+++..++.++.|++.||+|||++ + |+||||||+||+++.++. +||
T Consensus 97 -~lv~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~~~l~~~l~~lH~~---~~~ivH~dikp~Nil~~~~~~~~~~~~kl 170 (287)
T 4f0f_A 97 -RMVMEFVPCGDLYHRLLD--KAHPIKWSVKLRLMLDIALGIEYMQNQ---NPPIVHRDLRSPNIFLQSLDENAPVCAKV 170 (287)
T ss_dssp -EEEEECCTTCBHHHHHHC--TTSCCCHHHHHHHHHHHHHHHHHHHTS---SSCCBCSCCSGGGEEESCCCTTCSCCEEE
T ss_pred -eEEEEecCCCCHHHHHhc--ccCCccHHHHHHHHHHHHHHHHHHHhC---CCCeecCCCCcceEEEeccCCCCceeEEe
Confidence 799999999999998863 345699999999999999999999998 8 999999999999988776 999
Q ss_pred cccccccccCCCCCceeeeEecccceeCccccc--cCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccc
Q 002278 760 SDFGIARCIPTAMPHASTFVLGTIGYIDPEYAH--TSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNT 837 (943)
Q Consensus 760 ~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~--~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~ 837 (943)
+|||+++.... ......||+.|+|||++. ...++.++||||+||++|||++|+.||..................
T Consensus 171 ~Dfg~~~~~~~----~~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~ 246 (287)
T 4f0f_A 171 ADFGLSQQSVH----SVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYGKIKFINMIREEG 246 (287)
T ss_dssp CCCTTCBCCSS----CEECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTTCCCCHHHHHHHHHHSC
T ss_pred CCCCccccccc----cccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCccccccHHHHHHHHhccC
Confidence 99999985432 233456999999999984 456789999999999999999999999865432221111111111
Q ss_pred cccccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhc
Q 002278 838 VMEAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSL 887 (943)
Q Consensus 838 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~ 887 (943)
......+.+ ...+.+++..||+.||++|||+.++++.|+.+
T Consensus 247 ~~~~~~~~~---------~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~l 287 (287)
T 4f0f_A 247 LRPTIPEDC---------PPRLRNVIELCWSGDPKKRPHFSYIVKELSEL 287 (287)
T ss_dssp CCCCCCTTS---------CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTC
T ss_pred CCCCCCccc---------CHHHHHHHHHHhcCChhhCcCHHHHHHHHHhC
Confidence 111111111 24678999999999999999999999998753
No 124
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=100.00 E-value=6.8e-40 Score=376.98 Aligned_cols=252 Identities=18% Similarity=0.233 Sum_probs=201.9
Q ss_pred HhhccccceEEeeeceEEEEEEEec-CCceEEEEEeccc---CcccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceE
Q 002278 614 STENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQ---YPHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLL 689 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 689 (943)
..++|+..+.||+|+||.||+|..+ +++.||+|++... .......+.+|+++++.++||||+++++++...+..++
T Consensus 146 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~l 225 (446)
T 4ejn_A 146 TMNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCF 225 (446)
T ss_dssp CGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETTEEEE
T ss_pred ChHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEEE
Confidence 3578999999999999999999976 5789999998653 23344567889999999999999999999999999999
Q ss_pred EEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhh-CCCCCeEecCCCCccEEECCCCceeeccccccccc
Q 002278 690 FYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHH-DCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCI 768 (943)
Q Consensus 690 v~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~-~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~ 768 (943)
||||+++|+|.+++. ....+++..+..++.|++.||+|||+ . +|+||||||+|||++.++.+||+|||+|+..
T Consensus 226 v~e~~~~~~L~~~l~---~~~~~~~~~~~~~~~qi~~aL~~LH~~~---giiHrDlkp~NIll~~~~~~kl~DFG~a~~~ 299 (446)
T 4ejn_A 226 VMEYANGGELFFHLS---RERVFSEDRARFYGAEIVSALDYLHSEK---NVVYRDLKLENLMLDKDGHIKITDFGLCKEG 299 (446)
T ss_dssp EECCCSSCBHHHHHH---HHSCCCHHHHHHHHHHHHHHHHHHHHHT---CCCCCCCCGGGEEECSSSCEEECCCCCCCTT
T ss_pred EEeeCCCCcHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHhhcC---CEEECCCCHHHEEECCCCCEEEccCCCceec
Confidence 999999999999986 34578999999999999999999998 7 9999999999999999999999999999864
Q ss_pred CCCCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCccccc
Q 002278 769 PTAMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPEVSV 848 (943)
Q Consensus 769 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 848 (943)
..... ......||+.|+|||++.+..++.++|||||||++|||++|+.||.+................++.. +
T Consensus 300 ~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~i~~~~~~~p~~----~-- 372 (446)
T 4ejn_A 300 IKDGA-TMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHEKLFELILMEEIRFPRT----L-- 372 (446)
T ss_dssp CC------CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCTT----S--
T ss_pred cCCCc-ccccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCCCHHHHHHHHHhCCCCCCcc----C--
Confidence 33322 2233569999999999999999999999999999999999999998776544444333333222221 1
Q ss_pred CccCHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHHHHh
Q 002278 849 TCVDLSAVRKTFQLALLCTKRYPSERP-----TMQEVARVLV 885 (943)
Q Consensus 849 ~~~~~~~~~~l~~l~~~cl~~dP~~RP-----t~~el~~~L~ 885 (943)
...+.+++..||+.||++|| ++.|+++|-+
T Consensus 373 -------~~~~~~li~~~L~~dP~~R~~~~~~t~~ell~hp~ 407 (446)
T 4ejn_A 373 -------GPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQHRF 407 (446)
T ss_dssp -------CHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTSGG
T ss_pred -------CHHHHHHHHHHcccCHHHhCCCCCCCHHHHHhCcc
Confidence 14567899999999999999 9999998754
No 125
>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}
Probab=100.00 E-value=8e-40 Score=360.07 Aligned_cols=264 Identities=21% Similarity=0.245 Sum_probs=202.2
Q ss_pred hccccceEEeeeceEEEEEEEec-CCceEEEEEecccCcc-cHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEEEEE
Q 002278 616 ENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYPH-NLREFETELETIGSIRHRNIVSLHGYALSPYGNLLFYDY 693 (943)
Q Consensus 616 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~-~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 693 (943)
++|...+.||+|+||+||+|..+ +++.||+|++...... ....+.+|+++++.++||||+++++++.+....++||||
T Consensus 2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~ 81 (324)
T 3mtl_A 2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEY 81 (324)
T ss_dssp CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEEecc
Confidence 57899999999999999999986 6789999998644321 112345799999999999999999999999999999999
Q ss_pred ccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccCCCCC
Q 002278 694 MVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIPTAMP 773 (943)
Q Consensus 694 ~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~~~~~ 773 (943)
++ |+|.+++.. ....+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++.......
T Consensus 82 ~~-~~l~~~~~~--~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~ 155 (324)
T 3mtl_A 82 LD-KDLKQYLDD--CGNIINMHNVKLFLFQLLRGLAYCHRQ---KVLHRDLKPQNLLINERGELKLADFGLARAKSIPTK 155 (324)
T ss_dssp CS-EEHHHHHHH--TTTCCCHHHHHHHHHHHHHHHHHHHHT---TEEESSCCGGGEEECTTCCEEECSSSEEECC-----
T ss_pred cc-cCHHHHHHh--cCCCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCcCHHHEEECCCCCEEEccCcccccccCCcc
Confidence 97 588888863 234689999999999999999999999 999999999999999999999999999986643322
Q ss_pred ceeeeEecccceeCcccccc-CCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCcccccC---
Q 002278 774 HASTFVLGTIGYIDPEYAHT-SRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPEVSVT--- 849 (943)
Q Consensus 774 ~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 849 (943)
......||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+..............+.......+.....
T Consensus 156 -~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 234 (324)
T 3mtl_A 156 -TYDNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTVEEQLHFIFRILGTPTEETWPGILSNEEF 234 (324)
T ss_dssp --------CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGCHHH
T ss_pred -ccccccCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCChHhchhhhcchhh
Confidence 2233468999999999876 56899999999999999999999999887765554444332222222222211100
Q ss_pred ---------ccC-----HHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhh
Q 002278 850 ---------CVD-----LSAVRKTFQLALLCTKRYPSERPTMQEVARVLVS 886 (943)
Q Consensus 850 ---------~~~-----~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~ 886 (943)
... ......+.+++..|++.||++|||+.|+++|-+-
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f 285 (324)
T 3mtl_A 235 KTYNYPKYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAMKHPFF 285 (324)
T ss_dssp HHTCCCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTSGGG
T ss_pred cccccccccchhhhhhcCCCCHHHHHHHHHHcCcCcccCCCHHHHhcChhh
Confidence 000 0112466799999999999999999999998654
No 126
>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}
Probab=100.00 E-value=4.1e-39 Score=351.93 Aligned_cols=263 Identities=21% Similarity=0.232 Sum_probs=203.6
Q ss_pred HhhccccceEEeeeceEEEEEEEec-CCceEEEEEecccCc---ccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceE
Q 002278 614 STENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYP---HNLREFETELETIGSIRHRNIVSLHGYALSPYGNLL 689 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 689 (943)
..++|+..+.||+|+||.||+|.+. +++.||+|++..... ...+.+.+|+++++.++||||+++++++..++..++
T Consensus 32 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~l 111 (309)
T 2h34_A 32 QFGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLYV 111 (309)
T ss_dssp --CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEE
T ss_pred EeccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEEE
Confidence 4578999999999999999999976 578899999865432 234678899999999999999999999999999999
Q ss_pred EEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccC
Q 002278 690 FYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIP 769 (943)
Q Consensus 690 v~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~ 769 (943)
||||+++++|.+++. ....+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||++....
T Consensus 112 v~e~~~~~~L~~~l~---~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~~~ 185 (309)
T 2h34_A 112 DMRLINGVDLAAMLR---RQGPLAPPRAVAIVRQIGSALDAAHAA---GATHRDVKPENILVSADDFAYLVDFGIASATT 185 (309)
T ss_dssp EEECCCCEEHHHHHH---HHCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECSCCC-----
T ss_pred EEEecCCCCHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHC---cCCcCCCChHHEEEcCCCCEEEecCccCcccc
Confidence 999999999999996 345689999999999999999999999 99999999999999999999999999998765
Q ss_pred CCCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCcccccC
Q 002278 770 TAMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPEVSVT 849 (943)
Q Consensus 770 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (943)
...........|++.|+|||++.+..++.++||||||+++|||++|+.||...... .................+.++
T Consensus 186 ~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~-~~~~~~~~~~~~~~~~~~~~~-- 262 (309)
T 2h34_A 186 DEKLTQLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGDQLS-VMGAHINQAIPRPSTVRPGIP-- 262 (309)
T ss_dssp -----------CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSCHHH-HHHHHHHSCCCCGGGTSTTCC--
T ss_pred ccccccccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCchHH-HHHHHhccCCCCccccCCCCC--
Confidence 44333334456999999999999999999999999999999999999999876543 222222222222222222222
Q ss_pred ccCHHHHHHHHHHHHHccCCCCCCCC-CHHHHHHHHhhcCCCCC
Q 002278 850 CVDLSAVRKTFQLALLCTKRYPSERP-TMQEVARVLVSLLPAPP 892 (943)
Q Consensus 850 ~~~~~~~~~l~~l~~~cl~~dP~~RP-t~~el~~~L~~~~~~~~ 892 (943)
..+.+++..||+.||++|| +++++++.|+.......
T Consensus 263 -------~~l~~li~~~l~~dP~~Rp~s~~~l~~~l~~~l~~~~ 299 (309)
T 2h34_A 263 -------VAFDAVIARGMAKNPEDRYVTCGDLSAAAHAALATAD 299 (309)
T ss_dssp -------THHHHHHHHHTCSSGGGSCSSHHHHHHHHHHTCC---
T ss_pred -------HHHHHHHHHhccCCHHHHHHhHHHHHHHHHHHHHhhc
Confidence 3577899999999999999 99999999998776543
No 127
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Probab=100.00 E-value=3.9e-40 Score=368.62 Aligned_cols=262 Identities=24% Similarity=0.347 Sum_probs=211.0
Q ss_pred hhccccceEEeeeceEEEEEEEec------CCceEEEEEecccC-cccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcc
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK------NSRPIAVKKLYNQY-PHNLREFETELETIGSIRHRNIVSLHGYALSPYGN 687 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 687 (943)
.++|+..+.||+|+||+||+|.+. .++.||||++.... ......+.+|+.+++.++||||+++++++.+....
T Consensus 70 ~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~ 149 (367)
T 3l9p_A 70 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR 149 (367)
T ss_dssp GGGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred HhHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCC
Confidence 468899999999999999999853 35689999986543 33455788999999999999999999999999999
Q ss_pred eEEEEEccCCChhhhccCCC----CCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCC---ceeec
Q 002278 688 LLFYDYMVNGSLWDLLHGPS----KKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENF---DAHLS 760 (943)
Q Consensus 688 ~lv~e~~~~g~L~~~l~~~~----~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~---~~kl~ 760 (943)
++||||+++|+|.+++.... ....+++.+++.++.|++.||+|||++ +|+||||||+||+++.++ .+||+
T Consensus 150 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~~~~kL~ 226 (367)
T 3l9p_A 150 FILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGPGRVAKIG 226 (367)
T ss_dssp EEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTCCEEEC
T ss_pred EEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChhhEEEecCCCCceEEEC
Confidence 99999999999999986321 224589999999999999999999999 999999999999999554 59999
Q ss_pred ccccccccCCCC-CceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHh-CCCCCCCCccHHHHHHHhcccccc
Q 002278 761 DFGIARCIPTAM-PHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILT-GKKAVDNESNLHQLIMSKADDNTV 838 (943)
Q Consensus 761 DFGla~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-G~~p~~~~~~~~~~~~~~~~~~~~ 838 (943)
|||+++...... ........||+.|+|||++.+..++.++|||||||++|||+| |+.||...................
T Consensus 227 DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~~~~~~~~~i~~~~~~~ 306 (367)
T 3l9p_A 227 DFGMARDIYRAGYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRMD 306 (367)
T ss_dssp CCHHHHHHHHHSSCTTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTCCCC
T ss_pred CCccccccccccccccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCCCC
Confidence 999998642211 112223457899999999999999999999999999999998 999998766544333322221110
Q ss_pred ccccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCCCC
Q 002278 839 MEAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLPAP 891 (943)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~~~ 891 (943)
.... ....+.+++..||+.||++|||+.+++++|+.+....
T Consensus 307 ---~~~~---------~~~~l~~li~~~l~~dP~~Rps~~eil~~l~~~~~~~ 347 (367)
T 3l9p_A 307 ---PPKN---------CPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQDP 347 (367)
T ss_dssp ---CCTT---------CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHCH
T ss_pred ---CCcc---------CCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhhCh
Confidence 0111 1245778999999999999999999999998876543
No 128
>2eue_A Carbon catabolite derepressing protein kinase; kinase domain; 2.20A {Saccharomyces cerevisiae} PDB: 3fam_A 3hyh_A 3dae_A 2fh9_A 3mn3_A
Probab=100.00 E-value=1.7e-39 Score=348.85 Aligned_cols=249 Identities=20% Similarity=0.272 Sum_probs=186.9
Q ss_pred hhccccceEEeeeceEEEEEEEec-CCceEEEEEecccC---cccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEE
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQY---PHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLF 690 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 690 (943)
.++|+..+.||+|+||.||+|.+. +++.||+|++.... ....+.+.+|+++++.++||||+++++++.+.+..++|
T Consensus 12 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 91 (275)
T 2eue_A 12 IGNYQIVKTLGEGSFAKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMV 91 (275)
T ss_dssp CCCBCCCC---------EEEEECTTTCCEEEEEEECSCC-----CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSCEEEE
T ss_pred ccceEEEEEEEcCCCEEEEEEEECCCCCEEEEEEEEhhhcchHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCeEEEE
Confidence 357999999999999999999965 67899999986542 33456789999999999999999999999999999999
Q ss_pred EEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccCC
Q 002278 691 YDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIPT 770 (943)
Q Consensus 691 ~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~~ 770 (943)
|||+ ++++.+++. ....+++.++..++.|++.||+|||+. +|+||||||+||++++++.+||+|||+++....
T Consensus 92 ~e~~-~~~l~~~~~---~~~~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~ 164 (275)
T 2eue_A 92 IEYA-GNELFDYIV---QRDKMSEQEARRFFQQIISAVEYCHRH---KIVHRDLKPENLLLDEHLNVKIADFGLSNIMTD 164 (275)
T ss_dssp EECC-CEEHHHHHH---TSSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTSCEEECCSSCC-----
T ss_pred ehhc-CCcHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHC---CCeeccCChHhEEECCCCCEEEeecccceeccC
Confidence 9998 778888776 345699999999999999999999999 999999999999999999999999999986644
Q ss_pred CCCceeeeEecccceeCccccccCCC-CCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCcccccC
Q 002278 771 AMPHASTFVLGTIGYIDPEYAHTSRL-NEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPEVSVT 849 (943)
Q Consensus 771 ~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (943)
... .....||+.|+|||++.+..+ +.++||||+||++|||++|+.||...................+.. +
T Consensus 165 ~~~--~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~----~--- 235 (275)
T 2eue_A 165 GNF--LKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDESIPVLFKNISNGVYTLPKF----L--- 235 (275)
T ss_dssp ------------CTTCCHHHHCC-----THHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCTT----S---
T ss_pred ccc--ccCCCCCcCcCCceeeeCCCCCCcccchHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCcc----C---
Confidence 322 233458999999999988765 789999999999999999999998766544333333222222111 1
Q ss_pred ccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 002278 850 CVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLV 885 (943)
Q Consensus 850 ~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~ 885 (943)
...+.+++.+|++.||++|||+.|++++-+
T Consensus 236 ------~~~~~~li~~~l~~dP~~Rps~~e~l~h~~ 265 (275)
T 2eue_A 236 ------SPGAAGLIKRMLIVNPLNRISIHEIMQDDW 265 (275)
T ss_dssp ------CHHHHHHHHHHSCSSGGGSCCHHHHTTCHH
T ss_pred ------CHHHHHHHHHHhhcCHhHCCCHHHHhhCCe
Confidence 145678999999999999999999998755
No 129
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}
Probab=100.00 E-value=3.6e-39 Score=363.17 Aligned_cols=262 Identities=24% Similarity=0.348 Sum_probs=213.0
Q ss_pred HhhccccceEEeeeceEEEEEEEec--------CCceEEEEEecccC-cccHHHHHHHHHHHhcC-CCCCcceeeeEEec
Q 002278 614 STENLSEKYIVGYGASSTVYKCALK--------NSRPIAVKKLYNQY-PHNLREFETELETIGSI-RHRNIVSLHGYALS 683 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~--------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~ 683 (943)
..++|...+.||+|+||+||+|++. .+..||||++.... ....+.+.+|+++++.+ +||||+++++++.+
T Consensus 67 ~~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~ 146 (382)
T 3tt0_A 67 PRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQ 146 (382)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred chhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeecc
Confidence 4578999999999999999999863 23579999987543 33446788999999999 89999999999999
Q ss_pred CCcceEEEEEccCCChhhhccCCCC-------------CccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEE
Q 002278 684 PYGNLLFYDYMVNGSLWDLLHGPSK-------------KVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNIL 750 (943)
Q Consensus 684 ~~~~~lv~e~~~~g~L~~~l~~~~~-------------~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nil 750 (943)
++..++||||+++|+|.+++..... ...+++.+++.++.|++.||+|||+. +|+||||||+||+
T Consensus 147 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIl 223 (382)
T 3tt0_A 147 DGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASK---KCIHRDLAARNVL 223 (382)
T ss_dssp SSSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEE
T ss_pred CCceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCcceEE
Confidence 9999999999999999999864321 24589999999999999999999999 9999999999999
Q ss_pred ECCCCceeecccccccccCCCCC-ceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHh-CCCCCCCCccHHHH
Q 002278 751 IDENFDAHLSDFGIARCIPTAMP-HASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILT-GKKAVDNESNLHQL 828 (943)
Q Consensus 751 l~~~~~~kl~DFGla~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-G~~p~~~~~~~~~~ 828 (943)
+++++.+||+|||+++....... .......||+.|+|||++.+..++.++|||||||++|||++ |+.||.+.......
T Consensus 224 l~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~~~~~~~~~ 303 (382)
T 3tt0_A 224 VTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVPVEELF 303 (382)
T ss_dssp ECTTCCEEECSCSCCCCSSCCCTTCCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHH
T ss_pred EcCCCcEEEcccCcccccccccccccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCCHHHHH
Confidence 99999999999999987654322 12223457899999999999999999999999999999999 99999876543322
Q ss_pred HHHhccccccccccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCCC
Q 002278 829 IMSKADDNTVMEAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLPA 890 (943)
Q Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~~ 890 (943)
........ +..+.. ....+.+++..||+.||++|||+.+++++|+.+...
T Consensus 304 -~~~~~~~~------~~~~~~-----~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~ 353 (382)
T 3tt0_A 304 -KLLKEGHR------MDKPSN-----CTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRIVAL 353 (382)
T ss_dssp -HHHHTTCC------CCCCSS-----CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred -HHHHcCCC------CCCCcc-----CCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHH
Confidence 22221111 111111 124678899999999999999999999999887643
No 130
>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A
Probab=100.00 E-value=1.7e-39 Score=357.17 Aligned_cols=247 Identities=21% Similarity=0.291 Sum_probs=182.9
Q ss_pred ceEEeeeceEEEEEEEec-CCceEEEEEecccCcccHHHHHHHHHHHhcCC-CCCcceeeeEEecCCcceEEEEEccCCC
Q 002278 621 KYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYPHNLREFETELETIGSIR-HRNIVSLHGYALSPYGNLLFYDYMVNGS 698 (943)
Q Consensus 621 ~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~lv~e~~~~g~ 698 (943)
.+.||+|+||+||+|.++ +++.||||++... ....+.+|+++++.+. ||||+++++++.++...++||||+++|+
T Consensus 16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~~~~~ 92 (325)
T 3kn6_A 16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISKR---MEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNGGE 92 (325)
T ss_dssp SCCSEEETTEEEEEEEETTTCCEEEEEEEEGG---GHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCCSCB
T ss_pred CCccccCCCeEEEEEEECCCCCEEEEEEEChh---hhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEccCCCc
Confidence 478999999999999986 5789999998643 4567889999999997 9999999999999999999999999999
Q ss_pred hhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCC---ceeecccccccccCCCCCce
Q 002278 699 LWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENF---DAHLSDFGIARCIPTAMPHA 775 (943)
Q Consensus 699 L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~---~~kl~DFGla~~~~~~~~~~ 775 (943)
|.+++. ....+++.++..++.|++.||+|||+. +|+||||||+||+++.++ .+||+|||+++........
T Consensus 93 L~~~l~---~~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~~- 165 (325)
T 3kn6_A 93 LFERIK---KKKHFSETEASYIMRKLVSAVSHMHDV---GVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDNQP- 165 (325)
T ss_dssp HHHHHH---HCSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEC----CEEEECCCTTCEECCC-----
T ss_pred HHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHC---CCeecCCCHHHEEEecCCCcccEEEeccccceecCCCCCc-
Confidence 999997 345799999999999999999999999 999999999999997665 8999999999876543322
Q ss_pred eeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCcc------HHHHHHHhc-cccccccccCccccc
Q 002278 776 STFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESN------LHQLIMSKA-DDNTVMEAVDPEVSV 848 (943)
Q Consensus 776 ~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~------~~~~~~~~~-~~~~~~~~~~~~~~~ 848 (943)
.....||+.|+|||++.+..++.++||||+||++|||++|+.||..... ......... .........++.
T Consensus 166 ~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--- 242 (325)
T 3kn6_A 166 LKTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEIMKKIKKGDFSFEGEAWKN--- 242 (325)
T ss_dssp ------------------CCCCHHHHHHHHHHHHHHHHHSSCTTC-------CCCHHHHHHHHTTTCCCCCSHHHHT---
T ss_pred ccccCCCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCccccccccHHHHHHHHHcCCCCCCcccccC---
Confidence 2334689999999999999999999999999999999999999975432 112222111 111111111111
Q ss_pred CccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhh
Q 002278 849 TCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVS 886 (943)
Q Consensus 849 ~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~ 886 (943)
....+.+++..|++.||++|||+.++++|-+-
T Consensus 243 ------~s~~~~~li~~~L~~dP~~Rpt~~ell~h~w~ 274 (325)
T 3kn6_A 243 ------VSQEAKDLIQGLLTVDPNKRLKMSGLRYNEWL 274 (325)
T ss_dssp ------SCHHHHHHHHHHHCCCTTTCCCTTTSTTCGGG
T ss_pred ------CCHHHHHHHHHHCCCChhHCCCHHHHhcChhh
Confidence 12467789999999999999999999988664
No 131
>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...
Probab=100.00 E-value=7.4e-39 Score=345.50 Aligned_cols=253 Identities=24% Similarity=0.323 Sum_probs=208.4
Q ss_pred hhccccceEEeeeceEEEEEEEec-CCceEEEEEecccCc------ccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcc
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYP------HNLREFETELETIGSIRHRNIVSLHGYALSPYGN 687 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~------~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 687 (943)
.++|+..+.||+|+||.||+|..+ +++.||+|.+..... ...+.+.+|+++++.++||||+++++++.+....
T Consensus 4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~ 83 (283)
T 3bhy_A 4 EDHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDV 83 (283)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred hhhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCeE
Confidence 357999999999999999999987 588999998865421 2467899999999999999999999999999999
Q ss_pred eEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCC----ceeecccc
Q 002278 688 LLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENF----DAHLSDFG 763 (943)
Q Consensus 688 ~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~----~~kl~DFG 763 (943)
++||||+++++|.+++. ....+++.++..++.|++.||+|||+. +|+||||||+||+++.++ .+||+|||
T Consensus 84 ~lv~e~~~~~~L~~~l~---~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~~~~kl~dfg 157 (283)
T 3bhy_A 84 VLILELVSGGELFDFLA---EKESLTEDEATQFLKQILDGVHYLHSK---RIAHFDLKPENIMLLDKNVPNPRIKLIDFG 157 (283)
T ss_dssp EEEEECCCSCBHHHHHH---HHSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSSSSCCEEECCCT
T ss_pred EEEEeecCCCcHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCChHHEEEecCCCCCCceEEEecc
Confidence 99999999999999986 345689999999999999999999999 999999999999998877 89999999
Q ss_pred cccccCCCCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccC
Q 002278 764 IARCIPTAMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVD 843 (943)
Q Consensus 764 la~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 843 (943)
+++....... .....|++.|+|||++.+..++.++||||||+++|+|++|+.||.+......................
T Consensus 158 ~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (283)
T 3bhy_A 158 IAHKIEAGNE--FKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETKQETLTNISAVNYDFDEEYF 235 (283)
T ss_dssp TCEECC----------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTTCCCCCHHHH
T ss_pred cceeccCCCc--ccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCcchHHHHHHhHhcccCCcchhc
Confidence 9987644322 23345899999999999999999999999999999999999999877655444433332222211111
Q ss_pred cccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 002278 844 PEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVL 884 (943)
Q Consensus 844 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L 884 (943)
+.. ...+.+++..|++.||++|||+.+++++-
T Consensus 236 ~~~---------~~~~~~li~~~l~~dp~~Rps~~~~l~h~ 267 (283)
T 3bhy_A 236 SNT---------SELAKDFIRRLLVKDPKRRMTIAQSLEHS 267 (283)
T ss_dssp TTC---------CHHHHHHHHTTSCSSGGGSCCHHHHHHCH
T ss_pred ccC---------CHHHHHHHHHHccCCHhHCcCHHHHHhCH
Confidence 111 24677899999999999999999999864
No 132
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Probab=100.00 E-value=1.6e-39 Score=374.00 Aligned_cols=260 Identities=22% Similarity=0.229 Sum_probs=203.3
Q ss_pred hhccccceEEeeeceEEEEEEEec-CCceEEEEEeccc--CcccHHHHHHHHHHHhcCCCCCcceeeeEEecCC------
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQ--YPHNLREFETELETIGSIRHRNIVSLHGYALSPY------ 685 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~------ 685 (943)
.++|+..+.||+|+||+||+|.+. .++.||||++... .....+.+.+|+++++.++|||||++++++....
T Consensus 61 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~ 140 (464)
T 3ttj_A 61 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQ 140 (464)
T ss_dssp ETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCC
T ss_pred cCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccCC
Confidence 468999999999999999999976 5788999999654 2334567889999999999999999999997654
Q ss_pred cceEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccc
Q 002278 686 GNLLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIA 765 (943)
Q Consensus 686 ~~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla 765 (943)
..++||||+.++ +.+.+. ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+|
T Consensus 141 ~~~lv~E~~~~~-l~~~~~-----~~l~~~~~~~~~~qil~aL~~lH~~---~iiHrDlkp~NIll~~~~~~kl~DFG~a 211 (464)
T 3ttj_A 141 DVYLVMELMDAN-LCQVIQ-----MELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLA 211 (464)
T ss_dssp EEEEEEECCSEE-HHHHHT-----SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCCCC
T ss_pred eEEEEEeCCCCC-HHHHHh-----hcCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChHhEEEeCCCCEEEEEEEee
Confidence 459999999764 666664 2389999999999999999999999 9999999999999999999999999999
Q ss_pred cccCCCCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccc----
Q 002278 766 RCIPTAMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEA---- 841 (943)
Q Consensus 766 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~---- 841 (943)
+...... ......||+.|+|||++.+..++.++||||+||++|||++|+.||.+.+...++..+....+.....
T Consensus 212 ~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~g~~~~~~~~~i~~~lg~p~~~~~~~ 289 (464)
T 3ttj_A 212 RTAGTSF--MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYIDQWNKVIEQLGTPCPEFMKK 289 (464)
T ss_dssp -----CC--CC----CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHHHTT
T ss_pred eecCCCc--ccCCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHHH
Confidence 8765432 2344579999999999999999999999999999999999999999887776665554332211110
Q ss_pred -----------------------cCcccccCcc--CHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 002278 842 -----------------------VDPEVSVTCV--DLSAVRKTFQLALLCTKRYPSERPTMQEVARVLV 885 (943)
Q Consensus 842 -----------------------~~~~~~~~~~--~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~ 885 (943)
.+........ .......+.+++.+||+.||++|||+.|+++|-+
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp~ 358 (464)
T 3ttj_A 290 LQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPY 358 (464)
T ss_dssp SCHHHHHHHTTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHTSTT
T ss_pred cchhhhhHhhcccccCCCChHHhCcccccccccccccccCHHHHHHHHHHcCCChhhCCCHHHHhcChh
Confidence 0000000000 0112456789999999999999999999999865
No 133
>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...
Probab=100.00 E-value=4.2e-39 Score=346.66 Aligned_cols=259 Identities=28% Similarity=0.409 Sum_probs=212.3
Q ss_pred HhhccccceEEeeeceEEEEEEEecCCceEEEEEecccCcccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEEEEE
Q 002278 614 STENLSEKYIVGYGASSTVYKCALKNSRPIAVKKLYNQYPHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLFYDY 693 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 693 (943)
..++|+..+.||+|+||.||+|..++++.||+|++... ....+.+.+|+++++.++||||+++++++.. +..++||||
T Consensus 11 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~~~v~e~ 88 (279)
T 1qpc_A 11 PRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQG-SMSPDAFLAEANLMKQLQHQRLVRLYAVVTQ-EPIYIITEY 88 (279)
T ss_dssp CGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTT-SSCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEEEC
T ss_pred CHHhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCC-cccHHHHHHHHHHHHhCCCcCcceEEEEEcC-CCcEEEEec
Confidence 35689999999999999999999988889999998654 3456789999999999999999999999864 568999999
Q ss_pred ccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccCCCCC
Q 002278 694 MVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIPTAMP 773 (943)
Q Consensus 694 ~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~~~~~ 773 (943)
+++++|.+++... ....+++.++..++.|++.||+|||+. +|+||||||+||++++++.+||+|||+++.......
T Consensus 89 ~~~~~L~~~l~~~-~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~ 164 (279)
T 1qpc_A 89 MENGSLVDFLKTP-SGIKLTINKLLDMAAQIAEGMAFIEER---NYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEY 164 (279)
T ss_dssp CTTCBHHHHTTSH-HHHTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTTCEECSSSCE
T ss_pred CCCCCHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHhhEEEcCCCCEEECCCcccccccCccc
Confidence 9999999999631 122689999999999999999999999 999999999999999999999999999987754432
Q ss_pred ceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHh-CCCCCCCCccHHHHHHHhccccccccccCcccccCccC
Q 002278 774 HASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILT-GKKAVDNESNLHQLIMSKADDNTVMEAVDPEVSVTCVD 852 (943)
Q Consensus 774 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 852 (943)
.......+++.|+|||++.+..++.++||||||+++|||++ |+.||.+............... ......
T Consensus 165 ~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~~~~~---~~~~~~------- 234 (279)
T 1qpc_A 165 TAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTNPEVIQNLERGYR---MVRPDN------- 234 (279)
T ss_dssp ECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCC---CCCCTT-------
T ss_pred ccccCCCCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCcccCHHHHHHHHhcccC---CCCccc-------
Confidence 22233446789999999998899999999999999999999 9999987654433222221111 001111
Q ss_pred HHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCCC
Q 002278 853 LSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLPA 890 (943)
Q Consensus 853 ~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~~ 890 (943)
....+.+++..|++.||++|||+.++++.|+.+...
T Consensus 235 --~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~ 270 (279)
T 1qpc_A 235 --CPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFTA 270 (279)
T ss_dssp --CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred --ccHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHHh
Confidence 124678999999999999999999999999877643
No 134
>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A
Probab=100.00 E-value=5.8e-39 Score=350.12 Aligned_cols=255 Identities=20% Similarity=0.288 Sum_probs=209.3
Q ss_pred HhhccccceEEeeeceEEEEEEEec-CCceEEEEEecccCcccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEEEE
Q 002278 614 STENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYPHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLFYD 692 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 692 (943)
..++|...+.||+|+||.||+|+.+ +++.||+|++........+.+.+|+++++.++||||+++++++.+....++|||
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 86 (304)
T 2jam_A 7 IRKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVMQ 86 (304)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred hhccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEEEE
Confidence 3468999999999999999999976 688999999976554455678999999999999999999999999999999999
Q ss_pred EccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEE---CCCCceeecccccccccC
Q 002278 693 YMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILI---DENFDAHLSDFGIARCIP 769 (943)
Q Consensus 693 ~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill---~~~~~~kl~DFGla~~~~ 769 (943)
|+++|+|.+++. ....+++..+..++.|++.||+|||+. +|+||||||+||++ +.++.+||+|||+++...
T Consensus 87 ~~~~~~L~~~l~---~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~~ 160 (304)
T 2jam_A 87 LVSGGELFDRIL---ERGVYTEKDASLVIQQVLSAVKYLHEN---GIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQ 160 (304)
T ss_dssp CCCSCBHHHHHH---HHSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCCC
T ss_pred cCCCccHHHHHH---HcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEecCCCCCCEEEccCCcceecC
Confidence 999999999886 345689999999999999999999999 99999999999999 788999999999997654
Q ss_pred CCCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCcccccC
Q 002278 770 TAMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPEVSVT 849 (943)
Q Consensus 770 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (943)
... .....||+.|+|||++.+..++.++||||+||++|||++|+.||........................+.+
T Consensus 161 ~~~---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~--- 234 (304)
T 2jam_A 161 NGI---MSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETESKLFEKIKEGYYEFESPFWDDI--- 234 (304)
T ss_dssp CBT---THHHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHCCCCCCTTTTTTS---
T ss_pred CCc---cccccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcCCCCCCccccccC---
Confidence 321 12235899999999999999999999999999999999999999876654433333332222222211222
Q ss_pred ccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhh
Q 002278 850 CVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVS 886 (943)
Q Consensus 850 ~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~ 886 (943)
...+.+++..|++.||++|||+.+++++-+-
T Consensus 235 ------~~~~~~li~~~l~~dp~~Rps~~~~l~h~~~ 265 (304)
T 2jam_A 235 ------SESAKDFICHLLEKDPNERYTCEKALSHPWI 265 (304)
T ss_dssp ------CHHHHHHHHHHHCSSTTTSCCHHHHHTSHHH
T ss_pred ------CHHHHHHHHHHcCCChhHCcCHHHHhcCccc
Confidence 2467789999999999999999999997653
No 135
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Probab=100.00 E-value=2.3e-39 Score=376.50 Aligned_cols=260 Identities=25% Similarity=0.378 Sum_probs=214.3
Q ss_pred HhhccccceEEeeeceEEEEEEEecC-CceEEEEEecccCcccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEEEE
Q 002278 614 STENLSEKYIVGYGASSTVYKCALKN-SRPIAVKKLYNQYPHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLFYD 692 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 692 (943)
..++|+..+.||+|+||.||+|.++. +..||||++... ....+.+.+|++++++++|||||++++++......++|||
T Consensus 218 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~lv~E 296 (495)
T 1opk_A 218 ERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITE 296 (495)
T ss_dssp CGGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSS-SSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEE
T ss_pred CHHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCc-ccchHHHHHHHHHHHhcCCCCEeeEEEEEecCCcEEEEEE
Confidence 35678899999999999999999875 788999998654 3456889999999999999999999999999999999999
Q ss_pred EccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccCCCC
Q 002278 693 YMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIPTAM 772 (943)
Q Consensus 693 ~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~~~~ 772 (943)
|+++|+|.+++... ....+++..++.++.||+.||+|||++ +|+||||||+|||++.++.+||+|||+++......
T Consensus 297 ~~~~g~L~~~l~~~-~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~ 372 (495)
T 1opk_A 297 FMTYGNLLDYLREC-NRQEVSAVVLLYMATQISSAMEYLEKK---NFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDT 372 (495)
T ss_dssp CCTTCBHHHHHHHS-CTTTSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECGGGCEEECCTTCEECCTTCC
T ss_pred ccCCCCHHHHHHhc-CcCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCChhhEEECCCCcEEEeecccceeccCCc
Confidence 99999999999642 234589999999999999999999999 99999999999999999999999999998765433
Q ss_pred CceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHh-CCCCCCCCccHHHHHHHhccccccccccCcccccCcc
Q 002278 773 PHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILT-GKKAVDNESNLHQLIMSKADDNTVMEAVDPEVSVTCV 851 (943)
Q Consensus 773 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 851 (943)
........+++.|+|||++.+..++.++|||||||++|||+| |+.||.+.......... .... ....+.
T Consensus 373 ~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~~~~~~~~~-~~~~------~~~~~~--- 442 (495)
T 1opk_A 373 YTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELL-EKDY------RMERPE--- 442 (495)
T ss_dssp EECCTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHH-HTTC------CCCCCT---
T ss_pred eeecCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCCHHHHHHHH-HcCC------CCCCCC---
Confidence 222223346789999999999999999999999999999999 99999865543222211 1111 111111
Q ss_pred CHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCCC
Q 002278 852 DLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLPA 890 (943)
Q Consensus 852 ~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~~ 890 (943)
.....+.+++..||+.||++|||+.++++.|+.+...
T Consensus 443 --~~~~~l~~li~~cl~~dP~~RPs~~el~~~L~~~~~~ 479 (495)
T 1opk_A 443 --GCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQE 479 (495)
T ss_dssp --TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSCSS
T ss_pred --CCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHHhc
Confidence 1124678899999999999999999999999987643
No 136
>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.2e-39 Score=351.42 Aligned_cols=257 Identities=28% Similarity=0.460 Sum_probs=201.0
Q ss_pred hhccccceEEeeeceEEEEEEEecCCceEEEEEecccCcccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEEEEEc
Q 002278 615 TENLSEKYIVGYGASSTVYKCALKNSRPIAVKKLYNQYPHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLFYDYM 694 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 694 (943)
.++|+..+.||+|+||+||+|.+. ++.||+|++... ...+.+.+|++++++++||||+++++++.+ ..++||||+
T Consensus 7 ~~~~~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~--~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~--~~~lv~e~~ 81 (307)
T 2eva_A 7 YKEIEVEEVVGRGAFGVVCKAKWR-AKDVAIKQIESE--SERKAFIVELRQLSRVNHPNIVKLYGACLN--PVCLVMEYA 81 (307)
T ss_dssp GGGEEEEEEEECCSSSEEEEEEET-TEEEEEEECSST--THHHHHHHHHHHHHHCCCTTBCCEEEBCTT--TTEEEEECC
T ss_pred HhHeeeeeEeecCCCceEEEEEEC-CeeEEEEEecCh--hHHHHHHHHHHHHhcCCCCCcCeEEEEEcC--CcEEEEEcC
Confidence 467889999999999999999886 788999998643 345788999999999999999999998864 589999999
Q ss_pred cCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCc-eeecccccccccCCCCC
Q 002278 695 VNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFD-AHLSDFGIARCIPTAMP 773 (943)
Q Consensus 695 ~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~-~kl~DFGla~~~~~~~~ 773 (943)
++|+|.+++........+++..++.++.|+++||+|||+.+..+|+||||||+||+++.++. +||+|||+++.....
T Consensus 82 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~~~~-- 159 (307)
T 2eva_A 82 EGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTH-- 159 (307)
T ss_dssp TTCBHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC---------
T ss_pred CCCCHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEcccccccccccc--
Confidence 99999999985544446889999999999999999999932229999999999999998886 799999999765432
Q ss_pred ceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHH-HHHHHhccccccccccCcccccCccC
Q 002278 774 HASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLH-QLIMSKADDNTVMEAVDPEVSVTCVD 852 (943)
Q Consensus 774 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 852 (943)
.....||+.|+|||++.+..++.++|||||||++|||+||+.||....... ........ .. .+.....
T Consensus 160 --~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~-~~-----~~~~~~~--- 228 (307)
T 2eva_A 160 --MTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMWAVHN-GT-----RPPLIKN--- 228 (307)
T ss_dssp -------CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTCSSHHHHHHHHHT-TC-----CCCCBTT---
T ss_pred --cccCCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhhCccHHHHHHHHhc-CC-----CCCcccc---
Confidence 123458999999999999999999999999999999999999998543221 11111111 11 1111111
Q ss_pred HHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCCCC
Q 002278 853 LSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLPAP 891 (943)
Q Consensus 853 ~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~~~ 891 (943)
....+.+++.+||+.||++|||+.+++++|+.+....
T Consensus 229 --~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~ 265 (307)
T 2eva_A 229 --LPKPIESLMTRCWSKDPSQRPSMEEIVKIMTHLMRYF 265 (307)
T ss_dssp --CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHGGGC
T ss_pred --cCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhc
Confidence 1245778999999999999999999999998876543
No 137
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Probab=100.00 E-value=1.4e-39 Score=363.13 Aligned_cols=251 Identities=21% Similarity=0.254 Sum_probs=199.1
Q ss_pred HhhccccceEEeeeceEEEEEEEec-CCceEEEEEecccC---cccHHHHHHHHHH-HhcCCCCCcceeeeEEecCCcce
Q 002278 614 STENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQY---PHNLREFETELET-IGSIRHRNIVSLHGYALSPYGNL 688 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~-l~~l~h~niv~l~~~~~~~~~~~ 688 (943)
..++|+..+.||+|+||.||+|+.+ +++.||+|++.+.. ......+.+|..+ ++.++||||+++++++.+.+..+
T Consensus 36 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~ 115 (373)
T 2r5t_A 36 KPSDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLY 115 (373)
T ss_dssp CGGGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSEEE
T ss_pred ChhheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEE
Confidence 3568999999999999999999987 47889999986543 2233456677776 56789999999999999999999
Q ss_pred EEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeeccccccccc
Q 002278 689 LFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCI 768 (943)
Q Consensus 689 lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~ 768 (943)
+||||+++|+|.+++. ....+++..+..++.||+.||+|||++ +|+||||||+||+++.+|++||+|||+++..
T Consensus 116 lv~E~~~gg~L~~~l~---~~~~~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~ikL~DFG~a~~~ 189 (373)
T 2r5t_A 116 FVLDYINGGELFYHLQ---RERCFLEPRARFYAAEIASALGYLHSL---NIVYRDLKPENILLDSQGHIVLTDFGLCKEN 189 (373)
T ss_dssp EEEECCCSCBHHHHHH---HHSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCCBCGGG
T ss_pred EEEeCCCCCcHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEECCCCCEEEeeCcccccc
Confidence 9999999999999986 345689999999999999999999999 9999999999999999999999999999864
Q ss_pred CCCCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCccccc
Q 002278 769 PTAMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPEVSV 848 (943)
Q Consensus 769 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 848 (943)
..... .....+||+.|+|||++.+..++.++|||||||++|||++|+.||.+......+..+......+ .+.++
T Consensus 190 ~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~~~~~~~i~~~~~~~----~~~~~- 263 (373)
T 2r5t_A 190 IEHNS-TTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRNTAEMYDNILNKPLQL----KPNIT- 263 (373)
T ss_dssp BCCCC-CCCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSBHHHHHHHHHHSCCCC----CSSSC-
T ss_pred ccCCC-ccccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHhcccCC----CCCCC-
Confidence 33222 2234569999999999999999999999999999999999999998776655444443322221 12221
Q ss_pred CccCHHHHHHHHHHHHHccCCCCCCCCCH----HHHHHHH
Q 002278 849 TCVDLSAVRKTFQLALLCTKRYPSERPTM----QEVARVL 884 (943)
Q Consensus 849 ~~~~~~~~~~l~~l~~~cl~~dP~~RPt~----~el~~~L 884 (943)
..+.+++..|++.||++||++ .++.+|-
T Consensus 264 --------~~~~~li~~lL~~dp~~R~~~~~~~~~i~~h~ 295 (373)
T 2r5t_A 264 --------NSARHLLEGLLQKDRTKRLGAKDDFMEIKSHV 295 (373)
T ss_dssp --------HHHHHHHHHHTCSSGGGSTTTTTTHHHHHTSG
T ss_pred --------HHHHHHHHHHcccCHHhCCCCCCCHHHHhCCc
Confidence 456789999999999999987 4565553
No 138
>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*
Probab=100.00 E-value=4.9e-39 Score=348.94 Aligned_cols=253 Identities=21% Similarity=0.332 Sum_probs=211.7
Q ss_pred HhhccccceEEeeeceEEEEEEEecC-CceEEEEEecccC---cccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceE
Q 002278 614 STENLSEKYIVGYGASSTVYKCALKN-SRPIAVKKLYNQY---PHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLL 689 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 689 (943)
..++|...+.||+|+||.||+|.++. ++.||+|.+.... ....+.+.+|+++++.++||||+++++++.+.+..++
T Consensus 13 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~l 92 (294)
T 2rku_A 13 SRRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFV 92 (294)
T ss_dssp TTEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEE
T ss_pred cccceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEE
Confidence 34689999999999999999999874 6789999886542 2345678899999999999999999999999999999
Q ss_pred EEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccC
Q 002278 690 FYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIP 769 (943)
Q Consensus 690 v~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~ 769 (943)
||||+++++|.+++. ....+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++...
T Consensus 93 v~e~~~~~~L~~~~~---~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~ 166 (294)
T 2rku_A 93 VLELCRRRSLLELHK---RRKALTEPEARYYLRQIVLGCQYLHRN---RVIHRDLKLGNLFLNEDLEVKIGDFGLATKVE 166 (294)
T ss_dssp EEECCTTCBHHHHHH---HHCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEECC
T ss_pred EEecCCCCCHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEcCCCCEEEEeccCceecc
Confidence 999999999999886 345689999999999999999999999 99999999999999999999999999998765
Q ss_pred CCCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCcccccC
Q 002278 770 TAMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPEVSVT 849 (943)
Q Consensus 770 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (943)
..... .....||+.|+|||++.+..++.++||||+|+++|||++|+.||...................... +
T Consensus 167 ~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~----~--- 238 (294)
T 2rku_A 167 YDGER-KKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKNEYSIPKH----I--- 238 (294)
T ss_dssp STTCC-BCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTTCCCCCTT----S---
T ss_pred cCccc-cccccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhhccCCCccc----c---
Confidence 33222 233458999999999999889999999999999999999999998766554444333322221111 1
Q ss_pred ccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhh
Q 002278 850 CVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVS 886 (943)
Q Consensus 850 ~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~ 886 (943)
...+.+++..||+.||++|||+.+++++-+-
T Consensus 239 ------~~~~~~li~~~l~~~p~~Rps~~~ll~~~~~ 269 (294)
T 2rku_A 239 ------NPVAASLIQKMLQTDPTARPTINELLNDEFF 269 (294)
T ss_dssp ------CHHHHHHHHHHTCSSGGGSCCGGGGGGSHHH
T ss_pred ------CHHHHHHHHHHcccChhhCcCHHHHhhChhe
Confidence 1456789999999999999999999997654
No 139
>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*
Probab=100.00 E-value=1.2e-39 Score=359.79 Aligned_cols=257 Identities=16% Similarity=0.172 Sum_probs=207.0
Q ss_pred hhccccceEEeeeceEEEEEEEec-CCceEEEEEecccCcccHHHHHHHHHHHhcC-CCCCcceeeeEEecCCcceEEEE
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYPHNLREFETELETIGSI-RHRNIVSLHGYALSPYGNLLFYD 692 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e 692 (943)
.++|+..+.||+|+||+||+|... +++.||||.+..... .+.+.+|+++++.+ +||||+++++++......++|||
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~e 85 (330)
T 2izr_A 8 GPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSR--APQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVLE 85 (330)
T ss_dssp TTTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCS--SCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEEEEE
T ss_pred cCCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccc--hHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEEEEE
Confidence 367899999999999999999974 688999999865432 24688999999999 89999999999999999999999
Q ss_pred EccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCc-----eeecccccccc
Q 002278 693 YMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFD-----AHLSDFGIARC 767 (943)
Q Consensus 693 ~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~-----~kl~DFGla~~ 767 (943)
|+ +|+|.+++... ...+++.++..++.|++.||+|||+. +|+||||||+||+++.++. +||+|||+++.
T Consensus 86 ~~-~~~L~~~~~~~--~~~~~~~~~~~i~~qi~~~l~~LH~~---~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~~ 159 (330)
T 2izr_A 86 LL-GPSLEDLFDLC--DRTFSLKTVLMIAIQLISRMEYVHSK---NLIYRDVKPENFLIGRPGNKTQQVIHIIDFALAKE 159 (330)
T ss_dssp CC-CCBHHHHHHHT--TTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECCGGGTCTTSEEECCCTTCEE
T ss_pred eC-CCCHHHHHHHc--CCCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHeeeccCCCCCCceEEEEEccccee
Confidence 99 99999998732 35799999999999999999999999 9999999999999998887 99999999987
Q ss_pred cCCCCCc------eeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCcc--HHHHHHHh-cccccc
Q 002278 768 IPTAMPH------ASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESN--LHQLIMSK-ADDNTV 838 (943)
Q Consensus 768 ~~~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~--~~~~~~~~-~~~~~~ 838 (943)
+...... ......||+.|+|||++.+..++.++|||||||++|||++|+.||.+... ........ ......
T Consensus 160 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~~~~~~~~~~~i~~~~~~~ 239 (330)
T 2izr_A 160 YIDPETKKHIPYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRAT 239 (330)
T ss_dssp SBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCSSHHHHHHHHHHHHHHS
T ss_pred eecCCCCccccccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCccccccccHHHHHHHHHhhhccC
Confidence 6443221 12345699999999999999999999999999999999999999986422 21111111 110000
Q ss_pred c-cccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCC
Q 002278 839 M-EAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLP 889 (943)
Q Consensus 839 ~-~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~ 889 (943)
. +.... .. ..+.+++..||+.||.+||++.++.+.|+.+..
T Consensus 240 ~~~~~~~---------~~-p~~~~li~~~l~~~p~~RP~~~~l~~~l~~~~~ 281 (330)
T 2izr_A 240 PIEVLCE---------NF-PEMATYLRYVRRLDFFEKPDYDYLRKLFTDLFD 281 (330)
T ss_dssp CHHHHTT---------TC-HHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHH
T ss_pred CHHHHhc---------cC-hHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHH
Confidence 0 00000 01 267899999999999999999999999876643
No 140
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*
Probab=100.00 E-value=3.3e-39 Score=353.93 Aligned_cols=261 Identities=25% Similarity=0.369 Sum_probs=212.0
Q ss_pred HhhccccceEEeeeceEEEEEEEec------CCceEEEEEecccC-cccHHHHHHHHHHHhcCCCCCcceeeeEEecCCc
Q 002278 614 STENLSEKYIVGYGASSTVYKCALK------NSRPIAVKKLYNQY-PHNLREFETELETIGSIRHRNIVSLHGYALSPYG 686 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 686 (943)
..++|...+.||+|+||.||+|.+. +++.||+|++.... ....+.+.+|+++++.++||||+++++++.+.+.
T Consensus 21 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~ 100 (314)
T 2ivs_A 21 PRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQDGP 100 (314)
T ss_dssp CGGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSS
T ss_pred chhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEEecCCc
Confidence 4578999999999999999999863 34789999986543 3345678899999999999999999999999999
Q ss_pred ceEEEEEccCCChhhhccCCCC---------------------CccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCC
Q 002278 687 NLLFYDYMVNGSLWDLLHGPSK---------------------KVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVK 745 (943)
Q Consensus 687 ~~lv~e~~~~g~L~~~l~~~~~---------------------~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlk 745 (943)
.++||||+++|+|.+++..... ...+++.+++.++.|++.||+|||++ +|+|||||
T Consensus 101 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dik 177 (314)
T 2ivs_A 101 LLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEM---KLVHRDLA 177 (314)
T ss_dssp CEEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHHT---TEECCCCS
T ss_pred eEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHHC---CCcccccc
Confidence 9999999999999999864322 23489999999999999999999999 99999999
Q ss_pred CccEEECCCCceeecccccccccCCCCCc-eeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHh-CCCCCCCCc
Q 002278 746 SSNILIDENFDAHLSDFGIARCIPTAMPH-ASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILT-GKKAVDNES 823 (943)
Q Consensus 746 p~Nill~~~~~~kl~DFGla~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-G~~p~~~~~ 823 (943)
|+||++++++.+||+|||+++........ ......+++.|+|||++.+..++.++||||+||++|||+| |+.||.+..
T Consensus 178 p~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~ 257 (314)
T 2ivs_A 178 ARNILVAEGRKMKISDFGLSRDVYEEDSYVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIP 257 (314)
T ss_dssp GGGEEEETTTEEEECCCTTCEECTTTSCEECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCC
T ss_pred hheEEEcCCCCEEEccccccccccccccceeccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCC
Confidence 99999999999999999999876543222 1223347889999999999999999999999999999999 999998655
Q ss_pred cHHHHHHHhccccccccccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCC
Q 002278 824 NLHQLIMSKADDNTVMEAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLP 889 (943)
Q Consensus 824 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~ 889 (943)
............. ....+. ....+.+++..||+.||++|||+.+++++|+.+..
T Consensus 258 ~~~~~~~~~~~~~---~~~~~~---------~~~~~~~li~~~l~~dp~~Rps~~~l~~~l~~~~~ 311 (314)
T 2ivs_A 258 PERLFNLLKTGHR---MERPDN---------CSEEMYRLMLQCWKQEPDKRPVFADISKDLEKMMV 311 (314)
T ss_dssp GGGHHHHHHTTCC---CCCCTT---------CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCc---CCCCcc---------CCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHh
Confidence 4332222211111 011111 12467899999999999999999999999987653
No 141
>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A
Probab=100.00 E-value=1.9e-39 Score=361.95 Aligned_cols=253 Identities=21% Similarity=0.266 Sum_probs=196.7
Q ss_pred HhhccccceEEeeeceEEEEEEEec-CCceEEEEEecccCcccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEEEE
Q 002278 614 STENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYPHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLFYD 692 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 692 (943)
..++|+..+.||+|+||+||+|+.+ +++.||+|++.... ...+.+.+|+.+++.++||||+++++++.+....++|||
T Consensus 18 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e 96 (361)
T 3uc3_A 18 DSDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGA-AIDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIIME 96 (361)
T ss_dssp CTTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESST-TSCHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred CCCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCc-cccHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEEEEE
Confidence 3568999999999999999999987 67899999986543 234678899999999999999999999999999999999
Q ss_pred EccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCc--eeecccccccccCC
Q 002278 693 YMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFD--AHLSDFGIARCIPT 770 (943)
Q Consensus 693 ~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~--~kl~DFGla~~~~~ 770 (943)
|+++|+|.+++. ....+++..+..++.|++.||+|||++ +|+||||||+||+++.++. +||+|||+++....
T Consensus 97 ~~~~~~L~~~l~---~~~~~~~~~~~~i~~ql~~~L~~LH~~---~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~~~ 170 (361)
T 3uc3_A 97 YASGGELYERIC---NAGRFSEDEARFFFQQLLSGVSYCHSM---QICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVL 170 (361)
T ss_dssp CCCSCBHHHHHH---HHSSCCHHHHHHHHHHHHHHHHHHHHT---TCCSCCCCGGGEEECSSSSCCEEECCCCCC-----
T ss_pred eCCCCCHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEcCCCCceEEEeecCccccccc
Confidence 999999999986 345699999999999999999999999 9999999999999987765 99999999975432
Q ss_pred CCCceeeeEecccceeCccccccCCCCCc-chhhhHHHHHHHHHhCCCCCCCCcc---HHHHHHHhc-cccccccccCcc
Q 002278 771 AMPHASTFVLGTIGYIDPEYAHTSRLNEK-SDVYSFGIVLLEILTGKKAVDNESN---LHQLIMSKA-DDNTVMEAVDPE 845 (943)
Q Consensus 771 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~-~DvwSlGvil~elltG~~p~~~~~~---~~~~~~~~~-~~~~~~~~~~~~ 845 (943)
.. ......||+.|+|||++.+..++.+ +||||+||++|||++|+.||.+... ......... .....+. ...
T Consensus 171 ~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 246 (361)
T 3uc3_A 171 HS--QPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPRDYRKTIQRILSVKYSIPD--DIR 246 (361)
T ss_dssp ------------CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC----CCCHHHHHHHHHTTCCCCCT--TSC
T ss_pred cC--CCCCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCccHHHHHHHHHHHhcCCCCCCC--cCC
Confidence 21 2233469999999999988887655 8999999999999999999985432 122221111 1111111 001
Q ss_pred cccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhh
Q 002278 846 VSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVS 886 (943)
Q Consensus 846 ~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~ 886 (943)
+ ...+.+++.+||+.||++|||+.|+++|-+-
T Consensus 247 ~---------s~~~~~li~~~L~~dP~~Rps~~ell~hp~f 278 (361)
T 3uc3_A 247 I---------SPECCHLISRIFVADPATRISIPEIKTHSWF 278 (361)
T ss_dssp C---------CHHHHHHHHHHSCSCTTTSCCHHHHHTSHHH
T ss_pred C---------CHHHHHHHHHHccCChhHCcCHHHHHhCcch
Confidence 1 1466789999999999999999999998664
No 142
>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}
Probab=100.00 E-value=8.2e-39 Score=350.20 Aligned_cols=262 Identities=23% Similarity=0.281 Sum_probs=204.0
Q ss_pred hccccceEEeeeceEEEEEEEec-CCceEEEEEecccCc--ccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEEEE
Q 002278 616 ENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYP--HNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLFYD 692 (943)
Q Consensus 616 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 692 (943)
++|+..+.||+|+||+||+|.+. +++.||+|++..... ...+.+.+|++++++++||||+++++++.+.+..++|||
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 82 (311)
T 4agu_A 3 EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVFE 82 (311)
T ss_dssp CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred ccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEEEE
Confidence 57899999999999999999986 488999999865432 234567899999999999999999999999999999999
Q ss_pred EccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccCCCC
Q 002278 693 YMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIPTAM 772 (943)
Q Consensus 693 ~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~~~~ 772 (943)
|+++++|.+++. ....+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++......
T Consensus 83 ~~~~~~l~~~~~---~~~~~~~~~~~~i~~~l~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~ 156 (311)
T 4agu_A 83 YCDHTVLHELDR---YQRGVPEHLVKSITWQTLQAVNFCHKH---NCIHRDVKPENILITKHSVIKLCDFGFARLLTGPS 156 (311)
T ss_dssp CCSEEHHHHHHH---TSSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECC---
T ss_pred eCCCchHHHHHh---hhcCCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCCChhhEEEcCCCCEEEeeCCCchhccCcc
Confidence 999999999886 345689999999999999999999999 99999999999999999999999999998765432
Q ss_pred CceeeeEecccceeCcccccc-CCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhcccccccc-----------
Q 002278 773 PHASTFVLGTIGYIDPEYAHT-SRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVME----------- 840 (943)
Q Consensus 773 ~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~----------- 840 (943)
.. .....||+.|+|||++.+ ..++.++||||+||++|+|++|+.||.+...................
T Consensus 157 ~~-~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (311)
T 4agu_A 157 DY-YDDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVDQLYLIRKTLGDLIPRHQQVFSTNQY 235 (311)
T ss_dssp ----------GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHTCGG
T ss_pred cc-cCCCcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcccccccccccccccc
Confidence 22 233468999999999876 56899999999999999999999999877665544332221111000
Q ss_pred --cc-CcccccCccC-----HHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 002278 841 --AV-DPEVSVTCVD-----LSAVRKTFQLALLCTKRYPSERPTMQEVARVLV 885 (943)
Q Consensus 841 --~~-~~~~~~~~~~-----~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~ 885 (943)
.. .+... .... ......+.+++..||+.||++|||+.|+++|-+
T Consensus 236 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~ 287 (311)
T 4agu_A 236 FSGVKIPDPE-DMEPLELKFPNISYPALGLLKGCLHMDPTERLTCEQLLHHPY 287 (311)
T ss_dssp GTTCCCCCCS-SCCCHHHHCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHTSGG
T ss_pred cccCcCCCcc-ccchhhhhcccccHHHHHHHHHHccCChhhcCCHHHHhcChH
Confidence 00 00000 0000 011245778999999999999999999998854
No 143
>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*
Probab=100.00 E-value=1.2e-38 Score=351.08 Aligned_cols=263 Identities=21% Similarity=0.282 Sum_probs=213.5
Q ss_pred HHHHHHHhhccccc-eEEeeeceEEEEEEEec-CCceEEEEEecccC--cccHHHHHHHHHHHhcCC-CCCcceeeeEEe
Q 002278 608 FDDIMRSTENLSEK-YIVGYGASSTVYKCALK-NSRPIAVKKLYNQY--PHNLREFETELETIGSIR-HRNIVSLHGYAL 682 (943)
Q Consensus 608 ~~~~~~~~~~~~~~-~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~ 682 (943)
+.......+.|... +.||+|+||.||+|..+ +++.||+|++.... ......+.+|+.+++.++ ||||+++++++.
T Consensus 20 ~~~~~~~~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~ 99 (327)
T 3lm5_A 20 FQSMENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVYE 99 (327)
T ss_dssp SBCHHHHHHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEEE
T ss_pred HHHHHhhhhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEEE
Confidence 33444556777777 88999999999999976 58899999986532 344678999999999995 699999999999
Q ss_pred cCCcceEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECC---CCceee
Q 002278 683 SPYGNLLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDE---NFDAHL 759 (943)
Q Consensus 683 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~---~~~~kl 759 (943)
+....++||||+++|+|.+++... ....+++.+++.++.|++.||+|||+. +|+||||||+||+++. ++.+||
T Consensus 100 ~~~~~~lv~e~~~~~~L~~~~~~~-~~~~~~~~~~~~i~~ql~~~L~~LH~~---givH~Dikp~NIl~~~~~~~~~~kL 175 (327)
T 3lm5_A 100 NTSEIILILEYAAGGEIFSLCLPE-LAEMVSENDVIRLIKQILEGVYYLHQN---NIVHLDLKPQNILLSSIYPLGDIKI 175 (327)
T ss_dssp CSSEEEEEEECCTTEEGGGGGSSC-C-CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESCBTTBCCEEE
T ss_pred eCCeEEEEEEecCCCcHHHHHHHh-cccCCCHHHHHHHHHHHHHHHHHHHHC---CeecCcCChHHEEEecCCCCCcEEE
Confidence 999999999999999999998632 235699999999999999999999999 9999999999999987 789999
Q ss_pred cccccccccCCCCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccc
Q 002278 760 SDFGIARCIPTAMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVM 839 (943)
Q Consensus 760 ~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~ 839 (943)
+|||+++....... .....||+.|+|||++.+..++.++|||||||++|||++|+.||....................
T Consensus 176 ~Dfg~a~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~ 253 (327)
T 3lm5_A 176 VDFGMSRKIGHACE--LREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGEDNQETYLNISQVNVDYS 253 (327)
T ss_dssp CCGGGCEEC-----------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCC
T ss_pred eeCccccccCCccc--cccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHhcccccC
Confidence 99999987654322 2335699999999999999999999999999999999999999988776655544443333332
Q ss_pred cccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 002278 840 EAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLV 885 (943)
Q Consensus 840 ~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~ 885 (943)
....+.++ ..+.+++..||+.||++|||+.+++++-+
T Consensus 254 ~~~~~~~~---------~~~~~li~~~L~~dP~~Rpt~~~ll~h~~ 290 (327)
T 3lm5_A 254 EETFSSVS---------QLATDFIQSLLVKNPEKRPTAEICLSHSW 290 (327)
T ss_dssp TTTTTTSC---------HHHHHHHHHHSCSSGGGSCCHHHHTTCGG
T ss_pred chhhcccC---------HHHHHHHHHHcCCChhhCcCHHHHhCCHh
Confidence 22222222 45778999999999999999999999865
No 144
>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A
Probab=100.00 E-value=3.3e-39 Score=356.76 Aligned_cols=253 Identities=21% Similarity=0.256 Sum_probs=203.9
Q ss_pred HhhccccceEEeeeceEEEEEEEec-CCceEEEEEecccCcccHHHHHHHHHHHhcC-CCCCcceeeeEEecCCcceEEE
Q 002278 614 STENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYPHNLREFETELETIGSI-RHRNIVSLHGYALSPYGNLLFY 691 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ 691 (943)
..++|+..+.||+|+||.||+|.++ +++.||+|.+...... ..+|++++.++ +||||+++++++.+....++||
T Consensus 20 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~----~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~ 95 (342)
T 2qr7_A 20 FTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKRD----PTEEIEILLRYGQHPNIITLKDVYDDGKYVYVVT 95 (342)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTCC----CHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEE
T ss_pred ccccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccCC----hHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEEEE
Confidence 4578999999999999999999986 5788999998655332 35678888777 7999999999999999999999
Q ss_pred EEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCC----Cceeecccccccc
Q 002278 692 DYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDEN----FDAHLSDFGIARC 767 (943)
Q Consensus 692 e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~----~~~kl~DFGla~~ 767 (943)
||+++|+|.+++. ....+++..+..++.|++.||+|||++ +|+||||||+||++.++ +.+||+|||+++.
T Consensus 96 E~~~gg~L~~~i~---~~~~~~~~~~~~~~~qi~~al~~lH~~---givHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~ 169 (342)
T 2qr7_A 96 ELMKGGELLDKIL---RQKFFSEREASAVLFTITKTVEYLHAQ---GVVHRDLKPSNILYVDESGNPESIRICDFGFAKQ 169 (342)
T ss_dssp CCCCSCBHHHHHH---TCTTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESSSSCSGGGEEECCCTTCEE
T ss_pred eCCCCCcHHHHHH---HcCCCCHHHHHHHHHHHHHHHHHHHHC---CcEeccCCHHHEEEecCCCCcCeEEEEECCCccc
Confidence 9999999999987 345699999999999999999999999 99999999999998533 3599999999987
Q ss_pred cCCCCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCC--ccHHHHHH-HhccccccccccCc
Q 002278 768 IPTAMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNE--SNLHQLIM-SKADDNTVMEAVDP 844 (943)
Q Consensus 768 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~--~~~~~~~~-~~~~~~~~~~~~~~ 844 (943)
....... .....||+.|+|||++.+..++.++||||+||++|||++|+.||.+. ........ ............++
T Consensus 170 ~~~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 248 (342)
T 2qr7_A 170 LRAENGL-LMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPDDTPEEILARIGSGKFSLSGGYWN 248 (342)
T ss_dssp CBCTTCC-BCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSSTTSCHHHHHHHHHHCCCCCCSTTTT
T ss_pred CcCCCCc-eeccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCCCcCCHHHHHHHHccCCcccCccccc
Confidence 6544322 22346899999999999888999999999999999999999999753 22222222 22222222222222
Q ss_pred ccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhh
Q 002278 845 EVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVS 886 (943)
Q Consensus 845 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~ 886 (943)
.++ ..+.+++..|++.||++|||+.++++|-+-
T Consensus 249 ~~s---------~~~~~li~~~L~~dP~~R~t~~~il~hp~~ 281 (342)
T 2qr7_A 249 SVS---------DTAKDLVSKMLHVDPHQRLTAALVLRHPWI 281 (342)
T ss_dssp TSC---------HHHHHHHHHHTCSSTTTSCCHHHHTTSHHH
T ss_pred cCC---------HHHHHHHHHHCCCChhHCcCHHHHhcCCee
Confidence 222 467789999999999999999999998764
No 145
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...
Probab=100.00 E-value=8.7e-39 Score=345.95 Aligned_cols=259 Identities=29% Similarity=0.455 Sum_probs=199.9
Q ss_pred HhhccccceEEeeeceEEEEEEEecCCceEEEEEecccC--cccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEEE
Q 002278 614 STENLSEKYIVGYGASSTVYKCALKNSRPIAVKKLYNQY--PHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLFY 691 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 691 (943)
..++|+..+.||+|+||+||+|++.. .||+|++.... ....+.+.+|+++++.++||||+++++++ .....++||
T Consensus 22 ~~~~y~~~~~lG~G~~g~Vy~~~~~~--~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~-~~~~~~lv~ 98 (289)
T 3og7_A 22 PDGQITVGQRIGSGSFGTVYKGKWHG--DVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TAPQLAIVT 98 (289)
T ss_dssp CTTSCEEEEEEEECSSEEEEEEESSS--EEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEE-CSSSCEEEE
T ss_pred CccceeeeeEecCCCCeEEEEEEEcC--ceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeec-cCCccEEEE
Confidence 45689999999999999999998653 59999986543 33456789999999999999999999965 456789999
Q ss_pred EEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccCCC
Q 002278 692 DYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIPTA 771 (943)
Q Consensus 692 e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~~~ 771 (943)
||+++++|.+++.. ....+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++.....
T Consensus 99 e~~~~~~L~~~l~~--~~~~~~~~~~~~i~~qi~~~L~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~ 173 (289)
T 3og7_A 99 QWCEGSSLYHHLHA--SETKFEMKKLIDIARQTARGMDYLHAK---SIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRW 173 (289)
T ss_dssp ECCCEEEHHHHHTT--C---CCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEETTTEEEECCCC--------
T ss_pred EecCCCcHHHHHhh--ccCCCCHHHHHHHHHHHHHHHHHHHhC---CcccccCccceEEECCCCCEEEccceeccccccc
Confidence 99999999999963 345699999999999999999999999 9999999999999999999999999999865432
Q ss_pred C-CceeeeEecccceeCccccc---cCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccc--cccCcc
Q 002278 772 M-PHASTFVLGTIGYIDPEYAH---TSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVM--EAVDPE 845 (943)
Q Consensus 772 ~-~~~~~~~~gt~~y~aPE~~~---~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 845 (943)
. ........||+.|+|||++. +..++.++|||||||++|||++|+.||.+.................. ......
T Consensus 174 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (289)
T 3og7_A 174 SGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIEMVGRGSLSPDLSKVRSN 253 (289)
T ss_dssp ----------CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSCCCHHHHHHHHHHTSCCCCTTSSCTT
T ss_pred cccccccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCccccchHHHHHHHhcccccCcchhhcccc
Confidence 1 22223456999999999986 56788899999999999999999999987666555444333221111 111111
Q ss_pred cccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCC
Q 002278 846 VSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLP 889 (943)
Q Consensus 846 ~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~ 889 (943)
....+.+++..||+.||++|||+.++++.|+.+..
T Consensus 254 ---------~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~l~~ 288 (289)
T 3og7_A 254 ---------CPKRMKRLMAECLKKKRDERPSFPRILAEIEELAR 288 (289)
T ss_dssp ---------SCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC
T ss_pred ---------CCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHhh
Confidence 12567899999999999999999999999987653
No 146
>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=2e-39 Score=366.46 Aligned_cols=264 Identities=21% Similarity=0.274 Sum_probs=198.7
Q ss_pred HhhccccceEEeeeceEEEEEEEec-CCceEEEEEecccC--cccHHHHHHHHHHHhcCC-CCCcceeeeEEecCC--cc
Q 002278 614 STENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQY--PHNLREFETELETIGSIR-HRNIVSLHGYALSPY--GN 687 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~--~~ 687 (943)
..++|+..+.||+|+||.||+|.++ +++.||||++.... ....+.+.+|+.+++.+. ||||+++++++..++ ..
T Consensus 7 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~~ 86 (388)
T 3oz6_A 7 VLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRDV 86 (388)
T ss_dssp HHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSCE
T ss_pred ccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCEE
Confidence 4578999999999999999999976 58899999986542 334566789999999997 999999999997654 57
Q ss_pred eEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccc
Q 002278 688 LLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARC 767 (943)
Q Consensus 688 ~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~ 767 (943)
++||||++ |+|.+++. ...+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+|+.
T Consensus 87 ~lv~e~~~-~~L~~~~~----~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~~ 158 (388)
T 3oz6_A 87 YLVFDYME-TDLHAVIR----ANILEPVHKQYVVYQLIKVIKYLHSG---GLLHRDMKPSNILLNAECHVKVADFGLSRS 158 (388)
T ss_dssp EEEEECCS-EEHHHHHH----HTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEE
T ss_pred EEEecccC-cCHHHHHH----cCCCCHHHHHHHHHHHHHHHHHHHhC---CEEeCCCCHHHeEEcCCCCEEecCCccccc
Confidence 99999997 68988885 24689999999999999999999999 999999999999999999999999999987
Q ss_pred cCCCC--------------------CceeeeEecccceeCcccccc-CCCCCcchhhhHHHHHHHHHhCCCCCCCCccHH
Q 002278 768 IPTAM--------------------PHASTFVLGTIGYIDPEYAHT-SRLNEKSDVYSFGIVLLEILTGKKAVDNESNLH 826 (943)
Q Consensus 768 ~~~~~--------------------~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~ 826 (943)
+.... ....+..+||+.|+|||++.+ ..++.++||||+||++|||++|++||.+.+...
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~ 238 (388)
T 3oz6_A 159 FVNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPGSSTMN 238 (388)
T ss_dssp SSSCCCCCCCGGGCCC---------------CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH
T ss_pred ccccccccccccccccccccccccccccccCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCCHHH
Confidence 53211 111234569999999999886 678999999999999999999999999887766
Q ss_pred HHHHHhccccccccccCc-----------------------ccccCcc-----------CHHHHHHHHHHHHHccCCCCC
Q 002278 827 QLIMSKADDNTVMEAVDP-----------------------EVSVTCV-----------DLSAVRKTFQLALLCTKRYPS 872 (943)
Q Consensus 827 ~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~-----------~~~~~~~l~~l~~~cl~~dP~ 872 (943)
++..+....+........ ....... .......+.+++.+||+.||+
T Consensus 239 ~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~ 318 (388)
T 3oz6_A 239 QLERIIGVIDFPSNEDVESIQSPFAKTMIESLKEKVEIRQSNKRDIFTKWKNLLLKINPKADCNEEALDLLDKLLQFNPN 318 (388)
T ss_dssp HHHHHHHHHCCCCHHHHHTSCCSSHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHCTTCCCCHHHHHHHHHHCCSSGG
T ss_pred HHHHHHHhcCCCCHHHHHhccCHHHHHHHHhCcccccccCCCHHHhCcchhhhcccccccccCCHHHHHHHHHhhccCcc
Confidence 655543222111100000 0000000 001124677999999999999
Q ss_pred CCCCHHHHHHHHh
Q 002278 873 ERPTMQEVARVLV 885 (943)
Q Consensus 873 ~RPt~~el~~~L~ 885 (943)
+|||+.|+++|-+
T Consensus 319 ~R~t~~e~l~Hp~ 331 (388)
T 3oz6_A 319 KRISANDALKHPF 331 (388)
T ss_dssp GSCCHHHHTTSTT
T ss_pred cCCCHHHHhCCHH
Confidence 9999999999854
No 147
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*
Probab=100.00 E-value=4.9e-39 Score=355.50 Aligned_cols=253 Identities=21% Similarity=0.332 Sum_probs=211.9
Q ss_pred HhhccccceEEeeeceEEEEEEEecC-CceEEEEEecccC---cccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceE
Q 002278 614 STENLSEKYIVGYGASSTVYKCALKN-SRPIAVKKLYNQY---PHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLL 689 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 689 (943)
..++|...+.||+|+||.||+|.+.. ++.||+|.+.... ....+.+.+|+++++.++||||+++++++.+.+..++
T Consensus 39 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l 118 (335)
T 2owb_A 39 SRRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFV 118 (335)
T ss_dssp TTEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEE
T ss_pred cCCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEE
Confidence 35789999999999999999999874 6789999886542 2345678899999999999999999999999999999
Q ss_pred EEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccC
Q 002278 690 FYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIP 769 (943)
Q Consensus 690 v~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~ 769 (943)
||||+++++|.+++. ....+++.++..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++...
T Consensus 119 v~e~~~~~~L~~~~~---~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~ 192 (335)
T 2owb_A 119 VLELCRRRSLLELHK---RRKALTEPEARYYLRQIVLGCQYLHRN---RVIHRDLKLGNLFLNEDLEVKIGDFGLATKVE 192 (335)
T ss_dssp EECCCTTCBHHHHHH---HHCSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECCCTTCEECC
T ss_pred EEecCCCCCHHHHHh---ccCCCCHHHHHHHHHHHHHHHHHHHHC---CCEecCCCchhEEEcCCCCEEEeeccCceecc
Confidence 999999999999886 345689999999999999999999999 99999999999999999999999999998765
Q ss_pred CCCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCcccccC
Q 002278 770 TAMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPEVSVT 849 (943)
Q Consensus 770 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (943)
..... .....||+.|+|||++.+..++.++|||||||++|||++|+.||........+............. +
T Consensus 193 ~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~----~--- 264 (335)
T 2owb_A 193 YDGER-KKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRIKKNEYSIPKH----I--- 264 (335)
T ss_dssp STTCC-BCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHHTCCCCCTT----S---
T ss_pred cCccc-ccccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHhcCCCCCCcc----C---
Confidence 33222 233468999999999999899999999999999999999999998766544444333322222111 1
Q ss_pred ccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhh
Q 002278 850 CVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVS 886 (943)
Q Consensus 850 ~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~ 886 (943)
...+.+++..||+.||++|||+.|++++-+-
T Consensus 265 ------~~~~~~li~~~l~~dp~~Rps~~ell~~~~~ 295 (335)
T 2owb_A 265 ------NPVAASLIQKMLQTDPTARPTINELLNDEFF 295 (335)
T ss_dssp ------CHHHHHHHHHHTCSSGGGSCCGGGGGGSHHH
T ss_pred ------CHHHHHHHHHHccCChhHCcCHHHHhcCccc
Confidence 1356789999999999999999999987653
No 148
>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*
Probab=100.00 E-value=1.1e-38 Score=341.72 Aligned_cols=253 Identities=21% Similarity=0.340 Sum_probs=208.0
Q ss_pred hhccccceEEeeeceEEEEEEEecCCceEEEEEecccC--cccHHHHHHHHHHHhcCCCCCcceeeeEEecC--CcceEE
Q 002278 615 TENLSEKYIVGYGASSTVYKCALKNSRPIAVKKLYNQY--PHNLREFETELETIGSIRHRNIVSLHGYALSP--YGNLLF 690 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~--~~~~lv 690 (943)
.++|+..+.||+|+||+||+|+++ ++.||+|++.... ....+.+.+|++++++++||||+++++++.+. ...++|
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv 87 (271)
T 3kmu_A 9 FKQLNFLTKLNENHSGELWKGRWQ-GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTLI 87 (271)
T ss_dssp GGGCEEEEEEEEETTEEEEEEEET-TEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEEE
T ss_pred HHHhHHHHHhcCCCcceEEEEEEC-CeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEee
Confidence 467899999999999999999986 8889999987543 33456789999999999999999999999887 678999
Q ss_pred EEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCC--eEecCCCCccEEECCCCceeeccccccccc
Q 002278 691 YDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPR--IIHRDVKSSNILIDENFDAHLSDFGIARCI 768 (943)
Q Consensus 691 ~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~Dlkp~Nill~~~~~~kl~DFGla~~~ 768 (943)
|||+++|+|.+++... ....+++..++.++.|++.||+|||+. + |+||||||+||+++.++.++++|||++...
T Consensus 88 ~e~~~~~~L~~~l~~~-~~~~~~~~~~~~i~~qi~~~l~~lH~~---~~~i~H~dikp~Nil~~~~~~~~l~~~~~~~~~ 163 (271)
T 3kmu_A 88 THWMPYGSLYNVLHEG-TNFVVDQSQAVKFALDMARGMAFLHTL---EPLIPRHALNSRSVMIDEDMTARISMADVKFSF 163 (271)
T ss_dssp EECCTTCBHHHHHHSC-SSCCCCHHHHHHHHHHHHHHHHHHTTS---SSCCTTCCCSGGGEEECTTSCEEEEGGGSCCTT
T ss_pred ecccCCCcHHHHHhhc-ccCCCCHHHHHHHHHHHHHHHHHHhcC---CCceecCCCccceEEEcCCcceeEEeccceeee
Confidence 9999999999999743 223589999999999999999999998 7 999999999999999999999999887643
Q ss_pred CCCCCceeeeEecccceeCccccccCCCCC---cchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCcc
Q 002278 769 PTAMPHASTFVLGTIGYIDPEYAHTSRLNE---KSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPE 845 (943)
Q Consensus 769 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~---~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 845 (943)
... ...||+.|+|||++.+..++. ++|||||||++|||++|+.||.+................ ....+.
T Consensus 164 ~~~------~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~--~~~~~~ 235 (271)
T 3kmu_A 164 QSP------GRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLSNMEIGMKVALEGLR--PTIPPG 235 (271)
T ss_dssp SCT------TCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTSCHHHHHHHHHHSCCC--CCCCTT
T ss_pred ccc------CccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCccccChHHHHHHHHhcCCC--CCCCCC
Confidence 322 235899999999998765554 899999999999999999999877655443333222111 111111
Q ss_pred cccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCC
Q 002278 846 VSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLP 889 (943)
Q Consensus 846 ~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~ 889 (943)
+ ...+.+++..||+.||++|||+.++++.|+.+..
T Consensus 236 ~---------~~~~~~li~~~l~~~p~~Rps~~~il~~L~~l~~ 270 (271)
T 3kmu_A 236 I---------SPHVSKLMKICMNEDPAKRPKFDMIVPILEKMQD 270 (271)
T ss_dssp C---------CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHCC
T ss_pred C---------CHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhc
Confidence 1 2467899999999999999999999999987653
No 149
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=100.00 E-value=9.6e-39 Score=361.03 Aligned_cols=253 Identities=20% Similarity=0.237 Sum_probs=194.2
Q ss_pred hccccc-eEEeeeceEEEEEEEec-CCceEEEEEecccCcccHHHHHHHHHHH-hcCCCCCcceeeeEEec----CCcce
Q 002278 616 ENLSEK-YIVGYGASSTVYKCALK-NSRPIAVKKLYNQYPHNLREFETELETI-GSIRHRNIVSLHGYALS----PYGNL 688 (943)
Q Consensus 616 ~~~~~~-~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l-~~l~h~niv~l~~~~~~----~~~~~ 688 (943)
++|... +.||+|+||+||+|.++ +++.||||++... ..+.+|++++ +..+||||+++++++.. ....+
T Consensus 61 ~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~~-----~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~~~ 135 (400)
T 1nxk_A 61 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCLL 135 (400)
T ss_dssp GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEEE
T ss_pred ccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCcc-----hhHHHHHHHHHHhcCCCCcceEeEEEeecccCCcEEE
Confidence 456665 68999999999999976 5788999998532 5677888886 45589999999999865 45679
Q ss_pred EEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECC---CCceeecccccc
Q 002278 689 LFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDE---NFDAHLSDFGIA 765 (943)
Q Consensus 689 lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~---~~~~kl~DFGla 765 (943)
+||||+++|+|.+++... ....+++.++..++.||+.||+|||+. +|+||||||+||+++. ++.+||+|||++
T Consensus 136 lv~E~~~gg~L~~~l~~~-~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~~~~kl~DFG~a 211 (400)
T 1nxk_A 136 IVMECLDGGELFSRIQDR-GDQAFTEREASEIMKSIGEAIQYLHSI---NIAHRDVKPENLLYTSKRPNAILKLTDFGFA 211 (400)
T ss_dssp EEEECCCSEEHHHHHHCC----CCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSTTCCEEECCCTTC
T ss_pred EEEEeCCCCcHHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCcCcceEEEecCCCCccEEEEecccc
Confidence 999999999999999743 234689999999999999999999999 9999999999999997 789999999999
Q ss_pred cccCCCCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHH----HHHHHhccccccccc
Q 002278 766 RCIPTAMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLH----QLIMSKADDNTVMEA 841 (943)
Q Consensus 766 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~----~~~~~~~~~~~~~~~ 841 (943)
+...... .....+||+.|+|||++.+..++.++|||||||++|||++|+.||.+..... ...............
T Consensus 212 ~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~i~~~~~~~~~~ 289 (400)
T 1nxk_A 212 KETTSHN--SLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRMGQYEFPNP 289 (400)
T ss_dssp EECC-------------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTTCSSCCSHHHHHHHTCCCCCTT
T ss_pred cccCCCC--ccccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCccccccHHHHHHHHcCcccCCCc
Confidence 8764332 2234568999999999999999999999999999999999999997543211 111111111111111
Q ss_pred cCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcC
Q 002278 842 VDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLL 888 (943)
Q Consensus 842 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~ 888 (943)
.++.+ ...+.+++..||+.||++|||+.|+++|.+-..
T Consensus 290 ~~~~~---------s~~~~~li~~~L~~dP~~Rpt~~eil~hp~~~~ 327 (400)
T 1nxk_A 290 EWSEV---------SEEVKMLIRNLLKTEPTQRMTITEFMNHPWIMQ 327 (400)
T ss_dssp TTTTS---------CHHHHHHHHTTSCSSGGGSCCHHHHHHSHHHHT
T ss_pred ccccC---------CHHHHHHHHHHCCCChhHCcCHHHHhcCccccC
Confidence 11111 246778999999999999999999999877543
No 150
>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}
Probab=100.00 E-value=4.5e-39 Score=346.22 Aligned_cols=253 Identities=22% Similarity=0.334 Sum_probs=186.8
Q ss_pred HhhccccceEEeeeceEEEEEEEec-CCceEEEEEecccC---cccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceE
Q 002278 614 STENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQY---PHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLL 689 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 689 (943)
..++|+..+.||+|+||.||+|+.. +++.||+|.+.... ....+.+.+|+++++.++||||+++++++.+.+..++
T Consensus 9 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l 88 (278)
T 3cok_A 9 KIEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNYVYL 88 (278)
T ss_dssp SGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSEEEE
T ss_pred ccccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCeEEE
Confidence 3568999999999999999999975 68899999985432 2345778999999999999999999999999999999
Q ss_pred EEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccC
Q 002278 690 FYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIP 769 (943)
Q Consensus 690 v~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~ 769 (943)
||||+++++|.+++.. ....+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||++....
T Consensus 89 v~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~ 163 (278)
T 3cok_A 89 VLEMCHNGEMNRYLKN--RVKPFSENEARHFMHQIITGMLYLHSH---GILHRDLTLSNLLLTRNMNIKIADFGLATQLK 163 (278)
T ss_dssp EEECCTTEEHHHHHHT--CSSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSSCCGGGEEECTTCCEEECCCTTCEECC
T ss_pred EEecCCCCcHHHHHhh--ccCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCCEEEEeecceeecc
Confidence 9999999999999873 235689999999999999999999999 99999999999999999999999999998765
Q ss_pred CCCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCcccccC
Q 002278 770 TAMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPEVSVT 849 (943)
Q Consensus 770 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (943)
..... .....||+.|+|||++.+..++.++||||+|+++|||++|+.||................. ..+..
T Consensus 164 ~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~--------~~~~~ 234 (278)
T 3cok_A 164 MPHEK-HYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVKNTLNKVVLADY--------EMPSF 234 (278)
T ss_dssp -----------------------------CTHHHHHHHHHHHHHHSSCSSCCCSCC-----CCSSCC--------CCCTT
T ss_pred CCCCc-ceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChhHHHHHHHHhhccc--------CCccc
Confidence 33222 2234689999999999999999999999999999999999999986543322211111110 11110
Q ss_pred ccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 002278 850 CVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLV 885 (943)
Q Consensus 850 ~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~ 885 (943)
....+.+++.+|++.||++|||+.+++++-+
T Consensus 235 -----~~~~~~~li~~~l~~dp~~Rps~~~~l~h~~ 265 (278)
T 3cok_A 235 -----LSIEAKDLIHQLLRRNPADRLSLSSVLDHPF 265 (278)
T ss_dssp -----SCHHHHHHHHHHSCSSGGGSCCHHHHTTSTT
T ss_pred -----cCHHHHHHHHHHcccCHhhCCCHHHHhcCcc
Confidence 1246778999999999999999999988744
No 151
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...
Probab=100.00 E-value=5.5e-39 Score=355.20 Aligned_cols=262 Identities=24% Similarity=0.368 Sum_probs=211.5
Q ss_pred HhhccccceEEeeeceEEEEEEEec--------CCceEEEEEecccC-cccHHHHHHHHHHHhcC-CCCCcceeeeEEec
Q 002278 614 STENLSEKYIVGYGASSTVYKCALK--------NSRPIAVKKLYNQY-PHNLREFETELETIGSI-RHRNIVSLHGYALS 683 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~--------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~ 683 (943)
..++|+..+.||+|+||.||+|.+. ++..||+|++.... ....+.+.+|+++++.+ +||||+++++++.+
T Consensus 33 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~ 112 (334)
T 2pvf_A 33 PRDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQ 112 (334)
T ss_dssp CGGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred CHhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEcc
Confidence 3578999999999999999999863 45789999987543 23456788999999999 89999999999999
Q ss_pred CCcceEEEEEccCCChhhhccCCCC-------------CccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEE
Q 002278 684 PYGNLLFYDYMVNGSLWDLLHGPSK-------------KVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNIL 750 (943)
Q Consensus 684 ~~~~~lv~e~~~~g~L~~~l~~~~~-------------~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nil 750 (943)
.+..++||||+++|+|.+++..... ...+++.+++.++.|++.||+|||+. +|+||||||+||+
T Consensus 113 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIl 189 (334)
T 2pvf_A 113 DGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQ---KCIHRDLAARNVL 189 (334)
T ss_dssp SSCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEE
T ss_pred CCceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCccceEE
Confidence 9999999999999999999975321 23489999999999999999999999 9999999999999
Q ss_pred ECCCCceeecccccccccCCCCCc-eeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHh-CCCCCCCCccHHHH
Q 002278 751 IDENFDAHLSDFGIARCIPTAMPH-ASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILT-GKKAVDNESNLHQL 828 (943)
Q Consensus 751 l~~~~~~kl~DFGla~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-G~~p~~~~~~~~~~ 828 (943)
++.++.+||+|||+++........ ......+|+.|+|||++.+..++.++|||||||++|||+| |+.||.+.......
T Consensus 190 l~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~ 269 (334)
T 2pvf_A 190 VTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELF 269 (334)
T ss_dssp ECTTCCEEECCCTTCEECTTTSSEECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHH
T ss_pred EcCCCCEEEccccccccccccccccccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcCcCCHHHHH
Confidence 999999999999999876543221 1223347889999999998899999999999999999999 99999866543322
Q ss_pred HHHhccccccccccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCCC
Q 002278 829 IMSKADDNTVMEAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLPA 890 (943)
Q Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~~ 890 (943)
........ +..... ....+.+++..||+.||++|||+.+++++|+.+...
T Consensus 270 ~~~~~~~~-------~~~~~~-----~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~l~~~ 319 (334)
T 2pvf_A 270 KLLKEGHR-------MDKPAN-----CTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILTL 319 (334)
T ss_dssp HHHHHTCC-------CCCCTT-----CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred HHHhcCCC-------CCCCcc-----CCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhc
Confidence 22111110 111111 124678899999999999999999999999987653
No 152
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=9.4e-39 Score=371.71 Aligned_cols=328 Identities=20% Similarity=0.177 Sum_probs=205.6
Q ss_pred ccceeeccceecccccCCCCcCCCcccEEEeecccccCcCCCCCCcceEeEEEecCccccccCCccccccCCCcEEecCC
Q 002278 183 GLWYFDVRGNNLTGTIPDSIGNCTSFEILDISYNQITGEIPYNIGFLQVATLSLQGNKLTGKIPEVIGLMQALAVLDLSE 262 (943)
Q Consensus 183 ~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~ 262 (943)
+++.|+|++|+|++..+..|.++++|++|+|++|.++ +..|..|..+++|++|+|++
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-----------------------~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-----------------------AVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC-----------------------EECTTTTTTCTTCCEEECCS
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCccC-----------------------EeChhhhhCCccCCEEECCC
Confidence 3444444444444444444444444444444444443 23344455555555555555
Q ss_pred CCCCCCCCcccCCCCCcceEEecCCCCCCCCCCCcCCCCcCcEEEcccCccccccccccCCcccceEEEccccccCCcCc
Q 002278 263 NELVGPIPPILGNLSYTGKLYLHGNKLTGPIPPELGNMSKLSYLQLQNNQLVGTIPAELGKLEQLFELNLADNNLEGPIP 342 (943)
Q Consensus 263 N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p 342 (943)
|.+.+..+..|.++++|++|+|++|++++..+..|..+++|++|++++|.+.+..+..|..+++|++|+|++|++++..+
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 169 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence 55555444555566666666666666665555666666666666666666666666666666666666666666666555
Q ss_pred ccccCCCcCcEEEeeCCcccCcccccccccCccceeeccCCcCCCCCCCCCCCCCCccEEecCCCcCCCccCCCcccccc
Q 002278 343 HNISSCTALNQFNVHGNRLSGAIPSSFRNLGSLTYLNLSRNNFKGKVPTELGRIINLDTLDLSVNNFSGSVPASIGDLEH 422 (943)
Q Consensus 343 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 422 (943)
..|..+++|+.|++++|.+.+..+..|..+++|+.|++++|.+.+.+|.......+|+.|+|++|++++..+..|..+++
T Consensus 170 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 249 (477)
T 2id5_A 170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVY 249 (477)
T ss_dssp HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTT
T ss_pred hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccc
Confidence 56666666666666666666666666666667777777766665555555555557777777777777444455677777
Q ss_pred cceeecccccccccCCccccCCCccceecccCccccccCChhhhcccccceecccCcccCCCCCCcCccccCCcccccCC
Q 002278 423 LLTLNLSRNHLNGLLPAEFGNLRSIQTIDMSFNQLSGSIPAELGQLQNIISLILNNNNLQGGIPDQLSNCFSLSNLNVSY 502 (943)
Q Consensus 423 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~ 502 (943)
|+.|+|++|++++..+..|.++++|+.|+|++|++++..|..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 329 (477)
T 2id5_A 250 LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDS 329 (477)
T ss_dssp CCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCS
T ss_pred cCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccC
Confidence 77777777777766666777777777777777777776677777777777777777777766666667777777777777
Q ss_pred ccccccCCCCcccCcCCCCccccCCCCCCCC
Q 002278 503 NNLSGIIPPIRNFSRFSSNSFIGNPLLCGNW 533 (943)
Q Consensus 503 N~l~~~~~~~~~~~~~~~~~~~~Np~~c~~~ 533 (943)
|++++..+....+.......+.++...|..|
T Consensus 330 N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p 360 (477)
T 2id5_A 330 NPLACDCRLLWVFRRRWRLNFNRQQPTCATP 360 (477)
T ss_dssp SCEECSGGGHHHHTTTTSSCCTTCCCBEEES
T ss_pred CCccCccchHhHHhhhhccccCccCceeCCc
Confidence 7776543322222223334566777777654
No 153
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}
Probab=100.00 E-value=6.3e-39 Score=350.72 Aligned_cols=248 Identities=20% Similarity=0.217 Sum_probs=196.2
Q ss_pred hhccccceEEeeeceEEEEEEEec-CCceEEEEEecccCc--ccHHHHHHHHHHHhcC-CCCCcceeeeEEecCCcceEE
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYP--HNLREFETELETIGSI-RHRNIVSLHGYALSPYGNLLF 690 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv 690 (943)
.++|+..+.||+|+||+||+|.++ +++.||||++..... ........|+..+..+ +||||+++++++.+.+..++|
T Consensus 56 ~~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~lv 135 (311)
T 3p1a_A 56 QQSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQ 135 (311)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred hhheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEEE
Confidence 368999999999999999999987 689999999865432 2233445555555544 899999999999999999999
Q ss_pred EEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccCC
Q 002278 691 YDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIPT 770 (943)
Q Consensus 691 ~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~~ 770 (943)
|||+ +++|.+++.. ....+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++....
T Consensus 136 ~e~~-~~~L~~~~~~--~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kl~DFG~a~~~~~ 209 (311)
T 3p1a_A 136 TELC-GPSLQQHCEA--WGASLPEAQVWGYLRDTLLALAHLHSQ---GLVHLDVKPANIFLGPRGRCKLGDFGLLVELGT 209 (311)
T ss_dssp EECC-CCBHHHHHHH--HCSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECGGGCEEECCCTTCEECC-
T ss_pred Eecc-CCCHHHHHHh--cCCCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEECCCCCEEEccceeeeeccc
Confidence 9999 7799888863 234699999999999999999999999 999999999999999999999999999987654
Q ss_pred CCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCcccccCc
Q 002278 771 AMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPEVSVTC 850 (943)
Q Consensus 771 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 850 (943)
.. ......||+.|+|||++.+ .++.++|||||||++|||++|..|+........+. . ........+.+
T Consensus 210 ~~--~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~~~---~--~~~~~~~~~~~---- 277 (311)
T 3p1a_A 210 AG--AGEVQEGDPRYMAPELLQG-SYGTAADVFSLGLTILEVACNMELPHGGEGWQQLR---Q--GYLPPEFTAGL---- 277 (311)
T ss_dssp -------CCCCCGGGCCGGGGGT-CCSTHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHT---T--TCCCHHHHTTS----
T ss_pred CC--CCcccCCCccccCHhHhcC-CCCchhhHHHHHHHHHHHHhCCCCCCCccHHHHHh---c--cCCCcccccCC----
Confidence 32 2233459999999999876 78999999999999999999987776543322211 1 11111111111
Q ss_pred cCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 002278 851 VDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLV 885 (943)
Q Consensus 851 ~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~ 885 (943)
...+.+++..|++.||++|||+.|++++-+
T Consensus 278 -----~~~l~~li~~~L~~dP~~Rpt~~ell~hp~ 307 (311)
T 3p1a_A 278 -----SSELRSVLVMMLEPDPKLRATAEALLALPV 307 (311)
T ss_dssp -----CHHHHHHHHHHSCSSTTTSCCHHHHHTSGG
T ss_pred -----CHHHHHHHHHHcCCChhhCcCHHHHHhCcc
Confidence 256789999999999999999999998754
No 154
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Probab=100.00 E-value=4.1e-39 Score=374.01 Aligned_cols=253 Identities=22% Similarity=0.286 Sum_probs=208.9
Q ss_pred hhccccceEEeeeceEEEEEEEec-CCceEEEEEecccC---cccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEE
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQY---PHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLF 690 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 690 (943)
.++|+..+.||+|+||.||+|..+ +++.||+|++.+.. ......+.+|+++++.++|||||++++++.+.+..++|
T Consensus 183 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lV 262 (576)
T 2acx_A 183 KNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLV 262 (576)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred ccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEEEE
Confidence 467899999999999999999986 68899999986432 33456788999999999999999999999999999999
Q ss_pred EEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccCC
Q 002278 691 YDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIPT 770 (943)
Q Consensus 691 ~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~~ 770 (943)
|||++||+|.+++... ....+++..+..++.||+.||+|||++ +|+||||||+||+++.++++||+|||+++....
T Consensus 263 mEy~~gg~L~~~l~~~-~~~~l~e~~~~~i~~qIl~aL~yLH~~---gIvHrDLKPeNILld~~g~vKL~DFGla~~~~~ 338 (576)
T 2acx_A 263 LTLMNGGDLKFHIYHM-GQAGFPEARAVFYAAEICCGLEDLHRE---RIVYRDLKPENILLDDHGHIRISDLGLAVHVPE 338 (576)
T ss_dssp ECCCCSCBHHHHHHSS-SSCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCTTCEECCT
T ss_pred EEcCCCCcHHHHHHhc-CCCCCCHHHHHHHHHHHHHHHHHHHHC---CEeccCCchheEEEeCCCCeEEEecccceeccc
Confidence 9999999999998743 233589999999999999999999999 999999999999999999999999999987754
Q ss_pred CCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCcc---HHHHHHHhccccccccccCcccc
Q 002278 771 AMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESN---LHQLIMSKADDNTVMEAVDPEVS 847 (943)
Q Consensus 771 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 847 (943)
... ....+||+.|+|||++.+..++.++||||+||++|||++|+.||..... ............ ......+
T Consensus 339 ~~~--~~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~~~~~~~i~~~i~~~~---~~~p~~~- 412 (576)
T 2acx_A 339 GQT--IKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKIKREEVERLVKEVP---EEYSERF- 412 (576)
T ss_dssp TCC--EECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSSCCCHHHHHHHHHHCC---CCCCTTS-
T ss_pred Ccc--ccccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCcccccchhHHHHHHHhhccc---ccCCccC-
Confidence 422 2334799999999999999999999999999999999999999986532 222222111110 1111111
Q ss_pred cCccCHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHHHHh
Q 002278 848 VTCVDLSAVRKTFQLALLCTKRYPSERP-----TMQEVARVLV 885 (943)
Q Consensus 848 ~~~~~~~~~~~l~~l~~~cl~~dP~~RP-----t~~el~~~L~ 885 (943)
...+.+++..|++.||++|| ++.|+++|-+
T Consensus 413 --------s~~~~dLI~~lL~~dP~~R~g~~~~sa~eil~Hpf 447 (576)
T 2acx_A 413 --------SPQARSLCSQLLCKDPAERLGCRGGSAREVKEHPL 447 (576)
T ss_dssp --------CHHHHHHHHHHTCSSGGGSTTCSSSHHHHHHTSGG
T ss_pred --------CHHHHHHHHHhccCCHHHcCCCCCCCHHHHHhChh
Confidence 14667899999999999999 7899998754
No 155
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A
Probab=100.00 E-value=1.3e-38 Score=366.10 Aligned_cols=253 Identities=23% Similarity=0.359 Sum_probs=207.0
Q ss_pred HhhccccceEEeeeceEEEEEEEecCCceEEEEEecccCcccHHHHHHHHHHHhcCCCCCcceeeeEEecCC-cceEEEE
Q 002278 614 STENLSEKYIVGYGASSTVYKCALKNSRPIAVKKLYNQYPHNLREFETELETIGSIRHRNIVSLHGYALSPY-GNLLFYD 692 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~-~~~lv~e 692 (943)
..++|+..+.||+|+||.||+|.++ ++.||||++.... ..+.+.+|++++++++|||||++++++.... ..++|||
T Consensus 191 ~~~~~~~~~~lG~G~fg~V~~~~~~-~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~iv~e 267 (450)
T 1k9a_A 191 NMKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTE 267 (450)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEET-TEEEEEEEESSCT--TSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEEEEEE
T ss_pred ChHHeEEEeeecCcCCeeEEEEEec-CCeEEEEEeCCch--HHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceEEEEE
Confidence 3568889999999999999999986 7799999997543 4578999999999999999999999987765 6899999
Q ss_pred EccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccCCCC
Q 002278 693 YMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIPTAM 772 (943)
Q Consensus 693 ~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~~~~ 772 (943)
|+++|+|.+++... ....+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++......
T Consensus 268 ~~~~g~L~~~l~~~-~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~ 343 (450)
T 1k9a_A 268 YMAKGSLVDYLRSR-GRSVLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQ 343 (450)
T ss_dssp CCTTCBHHHHHHHH-CTTTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTSCEEECCCTTCEECC---
T ss_pred ecCCCcHHHHHHhc-CCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCHhhEEECCCCCEEEeeCCCcccccccc
Confidence 99999999999732 123478999999999999999999999 99999999999999999999999999998553221
Q ss_pred CceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHh-CCCCCCCCccHHHHHHHhccccccccccCcccccCcc
Q 002278 773 PHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILT-GKKAVDNESNLHQLIMSKADDNTVMEAVDPEVSVTCV 851 (943)
Q Consensus 773 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 851 (943)
....+++.|+|||++.+..++.++|||||||++|||+| |+.||............... . ....+..
T Consensus 344 ----~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~~~~~i~~~-~------~~~~p~~-- 410 (450)
T 1k9a_A 344 ----DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEKG-Y------KMDAPDG-- 410 (450)
T ss_dssp -------CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSCTTTHHHHHHTT-C------CCCCCTT--
T ss_pred ----cCCCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcC-C------CCCCCCc--
Confidence 12347889999999999999999999999999999998 99999865443322222111 1 1111111
Q ss_pred CHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCC
Q 002278 852 DLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLP 889 (943)
Q Consensus 852 ~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~ 889 (943)
....+.+++..||+.||++|||+.++++.|+.+..
T Consensus 411 ---~~~~l~~li~~cl~~dp~~Rpt~~~l~~~L~~i~~ 445 (450)
T 1k9a_A 411 ---CPPAVYDVMKNCWHLDAATRPTFLQLREQLEHIRT 445 (450)
T ss_dssp ---CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred ---CCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHH
Confidence 12567899999999999999999999999987654
No 156
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*
Probab=100.00 E-value=8.7e-39 Score=347.72 Aligned_cols=259 Identities=15% Similarity=0.181 Sum_probs=208.9
Q ss_pred hhccccceEEeeeceEEEEEEEec-CCceEEEEEecccCcccHHHHHHHHHHHhcC-CCCCcceeeeEEecCCcceEEEE
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYPHNLREFETELETIGSI-RHRNIVSLHGYALSPYGNLLFYD 692 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e 692 (943)
.++|+..+.||+|+||.||+|.+. +++.||+|++.... ..+.+.+|+++++.+ +|+|++++++++.+....++|||
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv~e 86 (298)
T 1csn_A 9 GVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS--DAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVID 86 (298)
T ss_dssp TTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT--TSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEE
T ss_pred ccceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCC--ccHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEEEEE
Confidence 467999999999999999999964 68899999886443 234678899999999 79999999999999999999999
Q ss_pred EccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCc-----eeecccccccc
Q 002278 693 YMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFD-----AHLSDFGIARC 767 (943)
Q Consensus 693 ~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~-----~kl~DFGla~~ 767 (943)
|+ +++|.+++... ...+++.++..++.|++.||+|||++ +|+||||||+||+++.++. +||+|||+++.
T Consensus 87 ~~-~~~L~~~l~~~--~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~~ 160 (298)
T 1csn_A 87 LL-GPSLEDLLDLC--GRKFSVKTVAMAAKQMLARVQSIHEK---SLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKF 160 (298)
T ss_dssp CC-CCBHHHHHHHT--TTCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEE
T ss_pred ec-CCCHHHHHHHh--ccCCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEeccCCCCCCCeEEEEECccccc
Confidence 99 99999999732 34589999999999999999999999 9999999999999987766 99999999987
Q ss_pred cCCCCCc------eeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCcc---HHHHHHHhccc-cc
Q 002278 768 IPTAMPH------ASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESN---LHQLIMSKADD-NT 837 (943)
Q Consensus 768 ~~~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~---~~~~~~~~~~~-~~ 837 (943)
....... ......||+.|+|||++.+..++.++|||||||++|||++|+.||.+... ........... ..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~ 240 (298)
T 1csn_A 161 YRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYERIGEKKQST 240 (298)
T ss_dssp SBCTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHHHHHHHHHHS
T ss_pred cccccccccccccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhccccHHHHHHHHhhccCc
Confidence 7543221 22345699999999999999999999999999999999999999986432 11111111110 01
Q ss_pred cccccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCCC
Q 002278 838 VMEAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLPA 890 (943)
Q Consensus 838 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~~ 890 (943)
......+.+ ...+.+++..||+.||++||+++++++.|+.+...
T Consensus 241 ~~~~~~~~~---------~~~l~~li~~~l~~dp~~RP~~~~l~~~l~~~~~~ 284 (298)
T 1csn_A 241 PLRELCAGF---------PEEFYKYMHYARNLAFDATPDYDYLQGLFSKVLER 284 (298)
T ss_dssp CHHHHTTTS---------CHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHH
T ss_pred cHHHHHhhC---------cHHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHh
Confidence 111111111 25678999999999999999999999999887643
No 157
>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=9e-39 Score=355.13 Aligned_cols=267 Identities=24% Similarity=0.259 Sum_probs=205.7
Q ss_pred HHhhccccceEEeeeceEEEEEEEec-CCceEEEEEecccCcc-----cHHHHHHHHHHHhcCCCCCcceeeeEEecCCc
Q 002278 613 RSTENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYPH-----NLREFETELETIGSIRHRNIVSLHGYALSPYG 686 (943)
Q Consensus 613 ~~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~-----~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 686 (943)
...++|+..+.||+|+||.||+|.+. +++.||+|++...... ..+.+.+|+++++.++||||+++++++.+...
T Consensus 7 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 86 (346)
T 1ua2_A 7 SRAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSN 86 (346)
T ss_dssp ------CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTC
T ss_pred HHhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeCCc
Confidence 34678999999999999999999976 5789999998643221 12467899999999999999999999999999
Q ss_pred ceEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeeccccccc
Q 002278 687 NLLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIAR 766 (943)
Q Consensus 687 ~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~ 766 (943)
.++||||+++ +|.+++.. ....+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++
T Consensus 87 ~~lv~e~~~~-~l~~~~~~--~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~ 160 (346)
T 1ua2_A 87 ISLVFDFMET-DLEVIIKD--NSLVLTPSHIKAYMLMTLQGLEYLHQH---WILHRDLKPNNLLLDENGVLKLADFGLAK 160 (346)
T ss_dssp CEEEEECCSE-EHHHHHTT--CCSSCCSSHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECCCGGGS
T ss_pred eEEEEEcCCC-CHHHHHHh--cCcCCCHHHHHHHHHHHHHHHHHHHHC---CEECCCCCHHHEEEcCCCCEEEEecccce
Confidence 9999999976 88888863 334688999999999999999999999 99999999999999999999999999998
Q ss_pred ccCCCCCceeeeEecccceeCccccccC-CCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCcc
Q 002278 767 CIPTAMPHASTFVLGTIGYIDPEYAHTS-RLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPE 845 (943)
Q Consensus 767 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 845 (943)
........ .....||+.|+|||++.+. .++.++|||||||++|||++|.+||.+..............+......++.
T Consensus 161 ~~~~~~~~-~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 239 (346)
T 1ua2_A 161 SFGSPNRA-YTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPTEEQWPD 239 (346)
T ss_dssp TTTSCCCC-CCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTSSS
T ss_pred eccCCccc-CCcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHcCCCChhhhhh
Confidence 76543222 2334689999999998764 589999999999999999999999998776665554443222221111111
Q ss_pred cccC----------ccC-----HHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhh
Q 002278 846 VSVT----------CVD-----LSAVRKTFQLALLCTKRYPSERPTMQEVARVLVS 886 (943)
Q Consensus 846 ~~~~----------~~~-----~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~ 886 (943)
.... ... ......+.+++..|++.||++|||+.|+++|-+-
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h~~f 295 (346)
T 1ua2_A 240 MCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALKMKYF 295 (346)
T ss_dssp TTSSTTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHTSGGG
T ss_pred hccCcccccccccCCCChHHhhccCCHHHHHHHHHHhccChhhCCCHHHHhcChhh
Confidence 1000 000 0112567899999999999999999999998764
No 158
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3.9e-38 Score=361.78 Aligned_cols=355 Identities=24% Similarity=0.261 Sum_probs=290.0
Q ss_pred CcEEEEEcCCCCCccccCCCcCCCCCCCEEEeeCCcccccCCCCccCCCCCcEEeccCCCcCCccchhccccccceEEEe
Q 002278 38 LSVVSLNLSSLNLGGEISPSIGDLRNLQSIDFQGNKLTGQIPDEIGNCGSLVHIELSDNSLYGDIPFSISKLKQLEFLNL 117 (943)
Q Consensus 38 ~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 117 (943)
.+++.|+|++|++++ +| .++.+++|++|+|++|+|++ +| ++.+++|++|+|++|++++. | |+.+++|++|++
T Consensus 42 ~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 42 ATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNC 113 (457)
T ss_dssp TTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEEC
T ss_pred CCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEEC
Confidence 357899999999996 44 79999999999999999996 45 89999999999999999964 4 899999999999
Q ss_pred cCcccccCCCcccCCCCCCcEEEEeccccccccchhccccccceeccccCCccCCCCCcccccccccceeeccceecccc
Q 002278 118 KNNQLTGPIPSTLTQIPNLKTLDLARNQLTGEIPRLIYWNEVLQYLGLRGNALTGMLSPDMCQLTGLWYFDVRGNNLTGT 197 (943)
Q Consensus 118 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~ 197 (943)
++|++++. | +..+++|++|++++|++++. + +..+++|++|++++|+..+.. .+..+++|++|++++|++++.
T Consensus 114 ~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l 185 (457)
T 3bz5_A 114 DTNKLTKL-D--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITEL 185 (457)
T ss_dssp CSSCCSCC-C--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCC
T ss_pred CCCcCCee-c--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcccee
Confidence 99999964 4 89999999999999999974 3 888999999999999543332 588899999999999999974
Q ss_pred cCCCCcCCCcccEEEeecccccCcCCCCCCcceEeEEEecCccccccCCccccccCCCcEEecCCCCCCCCCCcccCCCC
Q 002278 198 IPDSIGNCTSFEILDISYNQITGEIPYNIGFLQVATLSLQGNKLTGKIPEVIGLMQALAVLDLSENELVGPIPPILGNLS 277 (943)
Q Consensus 198 ~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 277 (943)
| +..+++|+.|++++|++++. .++.+++|+.|++++|++++ +| +..++
T Consensus 186 -~--l~~l~~L~~L~l~~N~l~~~--------------------------~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~ 233 (457)
T 3bz5_A 186 -D--VSQNKLLNRLNCDTNNITKL--------------------------DLNQNIQLTFLDCSSNKLTE-ID--VTPLT 233 (457)
T ss_dssp -C--CTTCTTCCEEECCSSCCSCC--------------------------CCTTCTTCSEEECCSSCCSC-CC--CTTCT
T ss_pred -c--cccCCCCCEEECcCCcCCee--------------------------ccccCCCCCEEECcCCcccc-cC--ccccC
Confidence 4 88999999999999998732 14556788888888888886 44 77788
Q ss_pred CcceEEecCCCCCCCCCCCcCCCCcCcEEEcccCccccccccccCCcccceEEEccccccCCcCcccccCCCcCcEEEee
Q 002278 278 YTGKLYLHGNKLTGPIPPELGNMSKLSYLQLQNNQLVGTIPAELGKLEQLFELNLADNNLEGPIPHNISSCTALNQFNVH 357 (943)
Q Consensus 278 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 357 (943)
+|+.|++++|++++.. +..+++|+.|++++|. |+.|++++|.+.+.+| +..+++|+.|+++
T Consensus 234 ~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n~--------------L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls 294 (457)
T 3bz5_A 234 QLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTD--------------LLEIDLTHNTQLIYFQ--AEGCRKIKELDVT 294 (457)
T ss_dssp TCSEEECCSSCCSCCC---CTTCTTCCEEECTTCC--------------CSCCCCTTCTTCCEEE--CTTCTTCCCCCCT
T ss_pred CCCEEEeeCCcCCCcC---HHHCCCCCEEeccCCC--------------CCEEECCCCccCCccc--ccccccCCEEECC
Confidence 8888888888888653 4566778888887764 4566778888776666 5678888888888
Q ss_pred CCcccCcccccccccCccceeeccCCcCCCCCCCCCCCCCCccEEecCCCcCCCccCCCcccccccceeecccccccccC
Q 002278 358 GNRLSGAIPSSFRNLGSLTYLNLSRNNFKGKVPTELGRIINLDTLDLSVNNFSGSVPASIGDLEHLLTLNLSRNHLNGLL 437 (943)
Q Consensus 358 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 437 (943)
+|...+.+|. ..++|+.|++++| ++|+.|++++|++++. + ++.+++|+.|++++|++++
T Consensus 295 ~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~-- 353 (457)
T 3bz5_A 295 HNTQLYLLDC---QAAGITELDLSQN-------------PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD-- 353 (457)
T ss_dssp TCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--
T ss_pred CCcccceecc---CCCcceEechhhc-------------ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--
Confidence 8887776664 3456666666655 5788999999999874 3 8889999999999999985
Q ss_pred CccccCCCccceecccCccccccCChhhhcccccceecccCcccCCCCCCcCcc
Q 002278 438 PAEFGNLRSIQTIDMSFNQLSGSIPAELGQLQNIISLILNNNNLQGGIPDQLSN 491 (943)
Q Consensus 438 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 491 (943)
++.|..|++++|.++|. +++..|..++|++|+++|.+|..+..
T Consensus 354 ------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~ 396 (457)
T 3bz5_A 354 ------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLLD 396 (457)
T ss_dssp ------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCBC
T ss_pred ------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHhc
Confidence 35678888999999875 46778888999999999988876543
No 159
>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}
Probab=100.00 E-value=5.9e-39 Score=356.11 Aligned_cols=257 Identities=23% Similarity=0.293 Sum_probs=202.0
Q ss_pred hhccccceEEeeeceEEEEEEEecCCceEEEEEecccC--cccHHHHHHHHHHHhcCCC--CCcceeeeEEecCCcceEE
Q 002278 615 TENLSEKYIVGYGASSTVYKCALKNSRPIAVKKLYNQY--PHNLREFETELETIGSIRH--RNIVSLHGYALSPYGNLLF 690 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h--~niv~l~~~~~~~~~~~lv 690 (943)
.++|+..+.||+|+||.||+|...+++.||||++.... ....+.+.+|+++++.++| |||+++++++..+...++|
T Consensus 8 ~~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~lv 87 (343)
T 3dbq_A 8 GRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMV 87 (343)
T ss_dssp SCEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred cCEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEEEE
Confidence 46799999999999999999999889999999986443 2334678899999999986 9999999999999999999
Q ss_pred EEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccCC
Q 002278 691 YDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIPT 770 (943)
Q Consensus 691 ~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~~ 770 (943)
|| +.+|+|.+++. ....+++.++..++.|++.||+|||+. +|+||||||+||+++ ++.+||+|||+++....
T Consensus 88 ~e-~~~~~L~~~l~---~~~~~~~~~~~~i~~qi~~al~~lH~~---~iiHrDikp~NIll~-~~~~kl~DFG~a~~~~~ 159 (343)
T 3dbq_A 88 ME-CGNIDLNSWLK---KKKSIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIV-DGMLKLIDFGIANQMQP 159 (343)
T ss_dssp EC-CCSEEHHHHHH---HSCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEE-TTEEEECCCSSSCCC--
T ss_pred Ee-CCCCCHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCcceEEEE-CCcEEEeecccccccCc
Confidence 99 56889999997 345789999999999999999999999 999999999999997 57899999999987654
Q ss_pred CCCc-eeeeEecccceeCcccccc-----------CCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhcccccc
Q 002278 771 AMPH-ASTFVLGTIGYIDPEYAHT-----------SRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTV 838 (943)
Q Consensus 771 ~~~~-~~~~~~gt~~y~aPE~~~~-----------~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~ 838 (943)
.... ......||+.|+|||++.+ ..++.++|||||||++|||++|+.||..................
T Consensus 160 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~- 238 (343)
T 3dbq_A 160 DTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNH- 238 (343)
T ss_dssp ----------CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHCTTS-
T ss_pred ccccccCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhhhhHHHHHHHHhcCCc-
Confidence 3222 2234569999999999865 67889999999999999999999999865443222222211111
Q ss_pred ccccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCC
Q 002278 839 MEAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLP 889 (943)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~ 889 (943)
...++... ...+.+++..||+.||++|||+.|+++|.+-...
T Consensus 239 ----~~~~~~~~-----~~~l~~li~~~L~~dp~~Rpt~~e~l~hp~~~~~ 280 (343)
T 3dbq_A 239 ----EIEFPDIP-----EKDLQDVLKCCLKRDPKQRISIPELLAHPYVQIQ 280 (343)
T ss_dssp ----CCCCCCCS-----CHHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHSC
T ss_pred ----ccCCcccC-----CHHHHHHHHHHcCCChhHCCCHHHHHhCcccccc
Confidence 01111111 1457789999999999999999999998775443
No 160
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}
Probab=100.00 E-value=1.5e-38 Score=343.30 Aligned_cols=255 Identities=20% Similarity=0.257 Sum_probs=202.9
Q ss_pred hhccccceEEeeeceEEEEEEEec-CCceEEEEEecccC-cccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEEEE
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQY-PHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLFYD 692 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 692 (943)
.++|...+.||+|+||+||+|..+ ++..||+|++.... ....+.+.+|+++++.++||||+++++++.+....++|||
T Consensus 21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e 100 (285)
T 3is5_A 21 DDLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVME 100 (285)
T ss_dssp HHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred hhheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEEEEEE
Confidence 468999999999999999999976 57899999986543 4456889999999999999999999999999999999999
Q ss_pred EccCCChhhhccCCC-CCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEE---CCCCceeeccccccccc
Q 002278 693 YMVNGSLWDLLHGPS-KKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILI---DENFDAHLSDFGIARCI 768 (943)
Q Consensus 693 ~~~~g~L~~~l~~~~-~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill---~~~~~~kl~DFGla~~~ 768 (943)
|+++|+|.+++.... ....+++..+..++.|++.||+|||+. +|+||||||+||++ +.++.+||+|||+++..
T Consensus 101 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~~~ 177 (285)
T 3is5_A 101 TCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFHSQ---HVVHKDLKPENILFQDTSPHSPIKIIDFGLAELF 177 (285)
T ss_dssp CCSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEESSSSTTCCEEECCCCCCCC-
T ss_pred eCCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHHhC---CEEECCCCHHHEEEecCCCCCCEEEEeeecceec
Confidence 999999999885211 235689999999999999999999999 99999999999999 45678999999999876
Q ss_pred CCCCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCccccc
Q 002278 769 PTAMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPEVSV 848 (943)
Q Consensus 769 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 848 (943)
.... ......||+.|+|||++. ..++.++||||+||++|||++|+.||.+...................... .+
T Consensus 178 ~~~~--~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~-~~-- 251 (285)
T 3is5_A 178 KSDE--HSTNAAGTALYMAPEVFK-RDVTFKCDIWSAGVVMYFLLTGCLPFTGTSLEEVQQKATYKEPNYAVECR-PL-- 251 (285)
T ss_dssp -----------CTTGGGCCHHHHT-TCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCC--C-CC--
T ss_pred CCcc--cCcCcccccCcCChHHhc-cCCCcccCeehHHHHHHHHHhCCCCCCCCCHHHHHhhhccCCcccccccC-cC--
Confidence 4432 223456999999999876 56899999999999999999999999876544333222222221111111 01
Q ss_pred CccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 002278 849 TCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLV 885 (943)
Q Consensus 849 ~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~ 885 (943)
...+.+++..|++.||++|||+.|++++-+
T Consensus 252 -------~~~~~~li~~~L~~dP~~Rps~~e~l~hp~ 281 (285)
T 3is5_A 252 -------TPQAVDLLKQMLTKDPERRPSAAQVLHHEW 281 (285)
T ss_dssp -------CHHHHHHHHHHTCSCTTTSCCHHHHHTSGG
T ss_pred -------CHHHHHHHHHHccCChhhCcCHHHHhcCHH
Confidence 146678999999999999999999998744
No 161
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Probab=100.00 E-value=7.8e-39 Score=354.88 Aligned_cols=252 Identities=28% Similarity=0.376 Sum_probs=207.5
Q ss_pred hhccccceEEeeeceEEEEEEEec-CCceEEEEEecccCc---ccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEE
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYP---HNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLF 690 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 690 (943)
.+.|+..+.||+|+||+||+|+.. +++.||||++..... ...+.+.+|+++++.++||||+++++++..++..++|
T Consensus 53 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 132 (348)
T 1u5q_A 53 EKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLV 132 (348)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred hhheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEE
Confidence 456899999999999999999974 688999999865432 2345688999999999999999999999999999999
Q ss_pred EEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccCC
Q 002278 691 YDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIPT 770 (943)
Q Consensus 691 ~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~~ 770 (943)
|||+. |++.+++.. ....+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++....
T Consensus 133 ~e~~~-g~l~~~l~~--~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~ 206 (348)
T 1u5q_A 133 MEYCL-GSASDLLEV--HKKPLQEVEIAAVTHGALQGLAYLHSH---NMIHRDVKAGNILLSEPGLVKLGDFGSASIMAP 206 (348)
T ss_dssp EECCS-EEHHHHHHH--HTSCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEEETTTEEEECCCTTCBSSSS
T ss_pred EecCC-CCHHHHHHH--hcCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEECCCCCEEEeeccCceecCC
Confidence 99997 678887752 235689999999999999999999999 999999999999999999999999999987643
Q ss_pred CCCceeeeEecccceeCccccc---cCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCcccc
Q 002278 771 AMPHASTFVLGTIGYIDPEYAH---TSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPEVS 847 (943)
Q Consensus 771 ~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 847 (943)
. ....||+.|+|||++. +..++.++|||||||++|||++|+.||.+...............+.. ....+
T Consensus 207 ~-----~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~- 278 (348)
T 1u5q_A 207 A-----NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYHIAQNESPAL--QSGHW- 278 (348)
T ss_dssp B-----CCCCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCC--CCTTS-
T ss_pred C-----CcccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHhcCCCCC--CCCCC-
Confidence 2 2245999999999884 56789999999999999999999999987766555444333221111 11111
Q ss_pred cCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcC
Q 002278 848 VTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLL 888 (943)
Q Consensus 848 ~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~ 888 (943)
...+.+++..||+.||++|||+.+++++.+-..
T Consensus 279 --------~~~l~~li~~~l~~dP~~Rps~~~ll~h~~~~~ 311 (348)
T 1u5q_A 279 --------SEYFRNFVDSCLQKIPQDRPTSEVLLKHRFVLR 311 (348)
T ss_dssp --------CHHHHHHHHHHTCSSGGGSCCHHHHTTCHHHHS
T ss_pred --------CHHHHHHHHHHcccChhhCcCHHHHhhChhhhc
Confidence 245778999999999999999999999877544
No 162
>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*
Probab=100.00 E-value=9e-39 Score=350.25 Aligned_cols=262 Identities=23% Similarity=0.339 Sum_probs=213.0
Q ss_pred HhhccccceEEeeeceEEEEEEEec------CCceEEEEEecccCc-ccHHHHHHHHHHHhcC-CCCCcceeeeEEecCC
Q 002278 614 STENLSEKYIVGYGASSTVYKCALK------NSRPIAVKKLYNQYP-HNLREFETELETIGSI-RHRNIVSLHGYALSPY 685 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~------~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~ 685 (943)
..++|+..+.||+|+||.||+|.+. .++.||+|++..... ...+.+.+|+++++++ +||||+++++++.+++
T Consensus 21 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~ 100 (313)
T 1t46_A 21 PRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIGG 100 (313)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred ChhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEecCC
Confidence 3568999999999999999999852 357899999875443 3456789999999999 8999999999999999
Q ss_pred cceEEEEEccCCChhhhccCCCC---------------CccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEE
Q 002278 686 GNLLFYDYMVNGSLWDLLHGPSK---------------KVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNIL 750 (943)
Q Consensus 686 ~~~lv~e~~~~g~L~~~l~~~~~---------------~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nil 750 (943)
..++||||+++|+|.+++..... ...+++.+++.++.|++.||+|||++ +|+||||||+||+
T Consensus 101 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil 177 (313)
T 1t46_A 101 PTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASK---NCIHRDLAARNIL 177 (313)
T ss_dssp SCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEE
T ss_pred CcEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCccceEE
Confidence 99999999999999999864321 12589999999999999999999999 9999999999999
Q ss_pred ECCCCceeecccccccccCCCCCc-eeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHh-CCCCCCCCccHHHH
Q 002278 751 IDENFDAHLSDFGIARCIPTAMPH-ASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILT-GKKAVDNESNLHQL 828 (943)
Q Consensus 751 l~~~~~~kl~DFGla~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-G~~p~~~~~~~~~~ 828 (943)
++.++.+||+|||+++........ ......||+.|+|||++.+..++.++|||||||++|||+| |+.||.+.......
T Consensus 178 ~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~ 257 (313)
T 1t46_A 178 LTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPVDSKF 257 (313)
T ss_dssp EETTTEEEECCCGGGSCTTSCTTSEECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCSSHHH
T ss_pred EcCCCCEEEccccccccccccccceeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCCcccchhHH
Confidence 999999999999999877544332 1223457889999999999999999999999999999999 99999865543333
Q ss_pred HHHhccccccccccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCC
Q 002278 829 IMSKADDNTVMEAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLP 889 (943)
Q Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~ 889 (943)
.......... ...+. ....+.+++..|++.||++|||+.+++++|+.+..
T Consensus 258 ~~~~~~~~~~--~~~~~---------~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~ 307 (313)
T 1t46_A 258 YKMIKEGFRM--LSPEH---------APAEMYDIMKTCWDADPLKRPTFKQIVQLIEKQIS 307 (313)
T ss_dssp HHHHHHTCCC--CCCTT---------SCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred HHHhccCCCC--CCccc---------CCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHH
Confidence 3222211110 01111 12467899999999999999999999999987654
No 163
>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*
Probab=100.00 E-value=3e-39 Score=356.30 Aligned_cols=265 Identities=20% Similarity=0.248 Sum_probs=201.6
Q ss_pred HHhhccccceEEeeeceEEEEEEEec-CCceEEEEEecccCc--ccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceE
Q 002278 613 RSTENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYP--HNLREFETELETIGSIRHRNIVSLHGYALSPYGNLL 689 (943)
Q Consensus 613 ~~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 689 (943)
...++|+..+.||+|+||+||+|.+. +++.||+|++..... ...+.+.+|+++++.++||||+++++++.++...++
T Consensus 31 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l 110 (329)
T 3gbz_A 31 TSIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLHL 110 (329)
T ss_dssp -CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEETTEEEE
T ss_pred cchhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecCCEEEE
Confidence 45678999999999999999999976 678999999865432 234567799999999999999999999999999999
Q ss_pred EEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEE-----CCCCceeeccccc
Q 002278 690 FYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILI-----DENFDAHLSDFGI 764 (943)
Q Consensus 690 v~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill-----~~~~~~kl~DFGl 764 (943)
||||++ |+|.+++. ....+++..+..++.|++.||+|||+. +|+||||||+||++ +.++.+||+|||+
T Consensus 111 v~e~~~-~~L~~~~~---~~~~~~~~~~~~i~~ql~~~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~ 183 (329)
T 3gbz_A 111 IFEYAE-NDLKKYMD---KNPDVSMRVIKSFLYQLINGVNFCHSR---RCLHRDLKPQNLLLSVSDASETPVLKIGDFGL 183 (329)
T ss_dssp EEECCS-EEHHHHHH---HCTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEC-----CCEEEECCTTH
T ss_pred EEecCC-CCHHHHHh---hcCCCCHHHHHHHHHHHHHHHHHHHhC---CEECCCCCHHHEEEecCCCCccceEEECcCCC
Confidence 999997 59999986 344689999999999999999999999 99999999999999 4555699999999
Q ss_pred ccccCCCCCceeeeEecccceeCccccccC-CCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccC
Q 002278 765 ARCIPTAMPHASTFVLGTIGYIDPEYAHTS-RLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVD 843 (943)
Q Consensus 765 a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 843 (943)
++....... ......||+.|+|||++.+. .++.++||||+||++|||++|+.||.+..............+.......
T Consensus 184 a~~~~~~~~-~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~ 262 (329)
T 3gbz_A 184 ARAFGIPIR-QFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPGDSEIDQLFKIFEVLGLPDDTTW 262 (329)
T ss_dssp HHHHC------------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCTTTS
T ss_pred ccccCCccc-ccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCCCCHHHHHHHHHHHhCCCchhhh
Confidence 987654322 22334689999999999875 4899999999999999999999999987766655544332221111111
Q ss_pred ccccc------C-----ccCHH------HHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 002278 844 PEVSV------T-----CVDLS------AVRKTFQLALLCTKRYPSERPTMQEVARVLV 885 (943)
Q Consensus 844 ~~~~~------~-----~~~~~------~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~ 885 (943)
+.... . ..... ....+.+++..||+.||++|||+.|+++|-+
T Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~ 321 (329)
T 3gbz_A 263 PGVTALPDWKQSFPKFRGKTLKRVLGALLDDEGLDLLTAMLEMDPVKRISAKNALEHPY 321 (329)
T ss_dssp TTGGGSTTCCTTCCCCCCCCHHHHHGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHTSGG
T ss_pred hhhhhhhhhhhhhhhhccccHhhhcccccCHHHHHHHHHHccCChhhCCCHHHHhCCcc
Confidence 11000 0 00000 1246779999999999999999999998755
No 164
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Probab=100.00 E-value=2.4e-39 Score=362.38 Aligned_cols=269 Identities=16% Similarity=0.207 Sum_probs=204.4
Q ss_pred HhhccccceEEeeeceEEEEEEEecC------CceEEEEEecccCcccH-----------HHHHHHHHHHhcCCCCCcce
Q 002278 614 STENLSEKYIVGYGASSTVYKCALKN------SRPIAVKKLYNQYPHNL-----------REFETELETIGSIRHRNIVS 676 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~~------~~~vavK~~~~~~~~~~-----------~~~~~E~~~l~~l~h~niv~ 676 (943)
..++|+..+.||+|+||+||+|.++. ++.||||++........ ..+..|+..++.++||||++
T Consensus 33 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~ 112 (364)
T 3op5_A 33 AAAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPK 112 (364)
T ss_dssp TCCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCC
T ss_pred CCCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCe
Confidence 45689999999999999999999865 37899999865432111 12334566677889999999
Q ss_pred eeeEEecC----CcceEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEEC
Q 002278 677 LHGYALSP----YGNLLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILID 752 (943)
Q Consensus 677 l~~~~~~~----~~~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~ 752 (943)
+++++... ...++||||+ +|+|.+++.. ....+++.+++.++.|++.||+|||+. +|+||||||+||+++
T Consensus 113 ~~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~--~~~~l~~~~~~~i~~qi~~~l~~lH~~---~iiHrDlkp~Nill~ 186 (364)
T 3op5_A 113 YWGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEA--NAKRFSRKTVLQLSLRILDILEYIHEH---EYVHGDIKASNLLLN 186 (364)
T ss_dssp EEEEEEEEETTEEEEEEEEECE-EEEHHHHHHH--TTSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEE
T ss_pred EEeeeeeccCCcceEEEEEeCC-CCCHHHHHHh--ccCCCCHHHHHHHHHHHHHHHHHHHHC---CeEEecCCHHHEEEe
Confidence 99998765 3479999999 9999999863 235699999999999999999999999 999999999999999
Q ss_pred --CCCceeecccccccccCCCCCc------eeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCcc
Q 002278 753 --ENFDAHLSDFGIARCIPTAMPH------ASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESN 824 (943)
Q Consensus 753 --~~~~~kl~DFGla~~~~~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~ 824 (943)
.++.+||+|||+++.+...... ......||+.|+|||++.+..++.++|||||||++|||+||+.||.+...
T Consensus 187 ~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~Pf~~~~~ 266 (364)
T 3op5_A 187 YKNPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWEDNLK 266 (364)
T ss_dssp SSCTTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTT
T ss_pred cCCCCeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCCCcccccc
Confidence 8899999999999876432111 11234599999999999999999999999999999999999999985332
Q ss_pred HHHHHHHhcc--ccccccccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCCCCC
Q 002278 825 LHQLIMSKAD--DNTVMEAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLPAPP 892 (943)
Q Consensus 825 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~~~~ 892 (943)
.......... .....+..++.+... .....+.+++..||+.||++||++.++++.|+.+.....
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~li~~cl~~~p~~RP~~~~l~~~l~~~~~~~~ 332 (364)
T 3op5_A 267 DPKYVRDSKIRYRENIASLMDKCFPAA----NAPGEIAKYMETVKLLDYTEKPLYENLRDILLQGLKAIG 332 (364)
T ss_dssp CHHHHHHHHHHHHHCHHHHHHHHSCTT----CCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHhhhhHHHHHHHhcccc----cCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHcC
Confidence 2222211111 111111111111100 112567899999999999999999999999987765433
No 165
>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...
Probab=100.00 E-value=7e-39 Score=346.61 Aligned_cols=259 Identities=25% Similarity=0.378 Sum_probs=215.6
Q ss_pred HhhccccceEEeeeceEEEEEEEecC-CceEEEEEecccCcccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEEEE
Q 002278 614 STENLSEKYIVGYGASSTVYKCALKN-SRPIAVKKLYNQYPHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLFYD 692 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 692 (943)
..++|+..+.||+|+||+||+|.++. +..||+|++... ....+.+.+|+++++.++||||+++++++.++...++|||
T Consensus 11 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e 89 (288)
T 3kfa_A 11 ERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITE 89 (288)
T ss_dssp CGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSC-STHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEE
T ss_pred cccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcC-HHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCEEEEEE
Confidence 56789999999999999999999874 788999998653 3456788999999999999999999999999999999999
Q ss_pred EccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccCCCC
Q 002278 693 YMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIPTAM 772 (943)
Q Consensus 693 ~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~~~~ 772 (943)
|+++|+|.+++... ....+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++......
T Consensus 90 ~~~~~~L~~~~~~~-~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~ 165 (288)
T 3kfa_A 90 FMTYGNLLDYLREC-NRQEVSAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDT 165 (288)
T ss_dssp CCTTEEHHHHHHHC-CTTTSCHHHHHHHHHHHHHHHHHHHHH---TCCCSCCSGGGEEECGGGCEEECCCCGGGTSCSSS
T ss_pred cCCCCcHHHHHHhc-ccCCccHhHHHHHHHHHHHHHHHHHHC---CccCCCCCcceEEEcCCCCEEEccCccceeccCCc
Confidence 99999999999643 234689999999999999999999999 99999999999999999999999999998876554
Q ss_pred CceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHh-CCCCCCCCccHHHHHHHhccccccccccCcccccCcc
Q 002278 773 PHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILT-GKKAVDNESNLHQLIMSKADDNTVMEAVDPEVSVTCV 851 (943)
Q Consensus 773 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 851 (943)
........+|+.|+|||++.+..++.++||||+|+++|+|++ |+.||............... .. ....+.+
T Consensus 166 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~~~~~~~~~~~~-~~--~~~~~~~----- 237 (288)
T 3kfa_A 166 YTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLSQVYELLEKD-YR--MERPEGC----- 237 (288)
T ss_dssp SEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHHTT-CC--CCCCTTC-----
T ss_pred cccccCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhcc-CC--CCCCCCC-----
Confidence 444445567889999999999999999999999999999999 99999865433222211111 10 0111111
Q ss_pred CHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCC
Q 002278 852 DLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLP 889 (943)
Q Consensus 852 ~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~ 889 (943)
...+.+++..|++.||++|||+.++++.|+.+..
T Consensus 238 ----~~~l~~li~~~l~~dp~~Rps~~~~~~~l~~~~~ 271 (288)
T 3kfa_A 238 ----PEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQ 271 (288)
T ss_dssp ----CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHhCCChhhCcCHHHHHHHHHHHHH
Confidence 2467899999999999999999999999987543
No 166
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=100.00 E-value=1.5e-38 Score=370.60 Aligned_cols=253 Identities=23% Similarity=0.301 Sum_probs=206.3
Q ss_pred hhccccceEEeeeceEEEEEEEec-CCceEEEEEecccC--cccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEEE
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQY--PHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLFY 691 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 691 (943)
.++|+..+.||+|+||+||+|+++ ++..||+|++.... ......+.+|+++++.++|||||++++++.+....++||
T Consensus 36 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~ 115 (494)
T 3lij_A 36 SEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVM 115 (494)
T ss_dssp HHHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred hcCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence 467999999999999999999986 57889999986543 334577899999999999999999999999999999999
Q ss_pred EEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECC---CCceeeccccccccc
Q 002278 692 DYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDE---NFDAHLSDFGIARCI 768 (943)
Q Consensus 692 e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~---~~~~kl~DFGla~~~ 768 (943)
||+++|+|.+.+. ....+++..+..++.|++.||+|||+. +|+||||||+||+++. ++.+||+|||+++..
T Consensus 116 e~~~~g~L~~~~~---~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~~ 189 (494)
T 3lij_A 116 ECYKGGELFDEII---HRMKFNEVDAAVIIKQVLSGVTYLHKH---NIVHRDLKPENLLLESKEKDALIKIVDFGLSAVF 189 (494)
T ss_dssp ECCCSCBHHHHHH---HHSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSTTCCEEECCCTTCEEC
T ss_pred ecCCCCcHHHHHH---HcCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCChhhEEEeCCCCCCcEEEEECCCCeEC
Confidence 9999999999886 345689999999999999999999999 9999999999999975 455999999999877
Q ss_pred CCCCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCccccc
Q 002278 769 PTAMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPEVSV 848 (943)
Q Consensus 769 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 848 (943)
.... ......||+.|+|||++. ..++.++||||+||++|+|++|+.||.+.....................++.++
T Consensus 190 ~~~~--~~~~~~gt~~y~aPE~l~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~s- 265 (494)
T 3lij_A 190 ENQK--KMKERLGTAYYIAPEVLR-KKYDEKCDVWSIGVILFILLAGYPPFGGQTDQEILRKVEKGKYTFDSPEWKNVS- 265 (494)
T ss_dssp BTTB--CBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCCCSGGGTTSC-
T ss_pred CCCc--cccccCCCcCeeCHHHHc-ccCCCchhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCchhcccCC-
Confidence 5432 223356999999999886 468999999999999999999999998876655444443333322222222222
Q ss_pred CccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 002278 849 TCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLV 885 (943)
Q Consensus 849 ~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~ 885 (943)
..+.+++..||+.||++|||+.++++|-+
T Consensus 266 --------~~~~~li~~~L~~dp~~R~s~~e~l~hp~ 294 (494)
T 3lij_A 266 --------EGAKDLIKQMLQFDSQRRISAQQALEHPW 294 (494)
T ss_dssp --------HHHHHHHHHHTCSSTTTSCCHHHHHTCHH
T ss_pred --------HHHHHHHHHHCCCChhhCccHHHHhcCcc
Confidence 45678999999999999999999998754
No 167
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*
Probab=100.00 E-value=7.3e-39 Score=353.16 Aligned_cols=269 Identities=24% Similarity=0.373 Sum_probs=209.4
Q ss_pred hhccccceEEeeeceEEEEEEEe-----cCCceEEEEEecccCcccHHHHHHHHHHHhcCCCCCcceeeeEEec--CCcc
Q 002278 615 TENLSEKYIVGYGASSTVYKCAL-----KNSRPIAVKKLYNQYPHNLREFETELETIGSIRHRNIVSLHGYALS--PYGN 687 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~-----~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~--~~~~ 687 (943)
.++|+..+.||+|+||.||+|++ ..++.||||++........+.+.+|++++++++||||+++++++.. ....
T Consensus 22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~ 101 (327)
T 3lxl_A 22 ERHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSL 101 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSCEE
T ss_pred hhhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCCceE
Confidence 46899999999999999999984 3578899999987666666789999999999999999999999874 4557
Q ss_pred eEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccc
Q 002278 688 LLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARC 767 (943)
Q Consensus 688 ~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~ 767 (943)
++||||+++|+|.+++.. ....+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++.
T Consensus 102 ~lv~e~~~~~~L~~~l~~--~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~ 176 (327)
T 3lxl_A 102 RLVMEYLPSGCLRDFLQR--HRARLDASRLLLYSSQICKGMEYLGSR---RCVHRDLAARNILVESEAHVKIADFGLAKL 176 (327)
T ss_dssp EEEEECCTTCBHHHHHHH--HGGGCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCGGGCEE
T ss_pred EEEEeecCCCCHHHHHHh--cccCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCChhhEEECCCCCEEEccccccee
Confidence 899999999999999963 234699999999999999999999999 999999999999999999999999999987
Q ss_pred cCCCCCc--eeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccc--------
Q 002278 768 IPTAMPH--ASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNT-------- 837 (943)
Q Consensus 768 ~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~-------- 837 (943)
....... ......||+.|+|||++.+..++.++|||||||++|+|++|+.||..................
T Consensus 177 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (327)
T 3lxl_A 177 LPLDKDYYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAEFLRMMGCERDVPALSRLLEL 256 (327)
T ss_dssp CCTTCSEEECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHCC----CCHHHHHHHH
T ss_pred cccCCccceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCccccchhhhhcccccccccHHHHHHH
Confidence 7544322 122345788899999999999999999999999999999999999753321100000000000
Q ss_pred cccccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCCCCCC
Q 002278 838 VMEAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLPAPPA 893 (943)
Q Consensus 838 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~~~~~ 893 (943)
......+.... .....+.+++..||+.||++|||+.+++++|+.+......
T Consensus 257 ~~~~~~~~~~~-----~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~~~ 307 (327)
T 3lxl_A 257 LEEGQRLPAPP-----ACPAEVHELMKLCWAPSPQDRPSFSALGPQLDMLWSGSRG 307 (327)
T ss_dssp HHTTCCCCCCT-----TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHC------
T ss_pred hhcccCCCCCC-----cccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhhhcC
Confidence 00000111111 1125678999999999999999999999999988765443
No 168
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Probab=100.00 E-value=2.3e-38 Score=354.03 Aligned_cols=261 Identities=23% Similarity=0.332 Sum_probs=212.3
Q ss_pred HHHHHHHhhccccceEEeeeceEEEEEEEec-CCceEEEEEecccCc--------ccHHHHHHHHHHHhcC-CCCCccee
Q 002278 608 FDDIMRSTENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYP--------HNLREFETELETIGSI-RHRNIVSL 677 (943)
Q Consensus 608 ~~~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~--------~~~~~~~~E~~~l~~l-~h~niv~l 677 (943)
........++|...+.||+|+||.||+|.++ +|+.||||++..... ...+.+.+|+++++.+ +||||+++
T Consensus 86 ~~~~~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~ 165 (365)
T 2y7j_A 86 WAAAKEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITL 165 (365)
T ss_dssp HHHHHHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCE
T ss_pred chhhhhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEE
Confidence 3444556778999999999999999999986 689999999865431 1135678899999998 79999999
Q ss_pred eeEEecCCcceEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCce
Q 002278 678 HGYALSPYGNLLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDA 757 (943)
Q Consensus 678 ~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~ 757 (943)
++++......++||||+++|+|.+++. ....+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+
T Consensus 166 ~~~~~~~~~~~lv~e~~~g~~L~~~l~---~~~~l~~~~~~~i~~qi~~~L~~LH~~---gi~H~Dlkp~NIl~~~~~~i 239 (365)
T 2y7j_A 166 IDSYESSSFMFLVFDLMRKGELFDYLT---EKVALSEKETRSIMRSLLEAVSFLHAN---NIVHRDLKPENILLDDNMQI 239 (365)
T ss_dssp EEEEEBSSEEEEEECCCTTCBHHHHHH---HHSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCE
T ss_pred EEEEeeCCEEEEEEEeCCCCcHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEECCCCCE
Confidence 999999999999999999999999986 345699999999999999999999999 99999999999999999999
Q ss_pred eecccccccccCCCCCceeeeEecccceeCcccccc------CCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHH
Q 002278 758 HLSDFGIARCIPTAMPHASTFVLGTIGYIDPEYAHT------SRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMS 831 (943)
Q Consensus 758 kl~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~ 831 (943)
||+|||++........ .....||+.|+|||++.+ ..++.++|||||||++|||++|+.||............
T Consensus 240 kl~DfG~~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~i 317 (365)
T 2y7j_A 240 RLSDFGFSCHLEPGEK--LRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPFWHRRQILMLRMI 317 (365)
T ss_dssp EECCCTTCEECCTTCC--BCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHH
T ss_pred EEEecCcccccCCCcc--cccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 9999999987754322 233569999999998863 35889999999999999999999999876654443333
Q ss_pred hccccccccccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 002278 832 KADDNTVMEAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLV 885 (943)
Q Consensus 832 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~ 885 (943)
...........++.. ...+.+++..|++.||++|||+.++++|-+
T Consensus 318 ~~~~~~~~~~~~~~~---------~~~~~~li~~~L~~dP~~Rps~~ell~hp~ 362 (365)
T 2y7j_A 318 MEGQYQFSSPEWDDR---------SSTVKDLISRLLQVDPEARLTAEQALQHPF 362 (365)
T ss_dssp HHTCCCCCHHHHSSS---------CHHHHHHHHHHSCSSTTTSCCHHHHHHSGG
T ss_pred HhCCCCCCCcccccC---------CHHHHHHHHHHcCCChhHCcCHHHHhcCcc
Confidence 322221111111111 245778999999999999999999998754
No 169
>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
Probab=100.00 E-value=8.3e-39 Score=344.66 Aligned_cols=257 Identities=24% Similarity=0.310 Sum_probs=204.6
Q ss_pred HhhccccceEEeeeceEEEEEEEecC----CceEEEEEecccC-cccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcce
Q 002278 614 STENLSEKYIVGYGASSTVYKCALKN----SRPIAVKKLYNQY-PHNLREFETELETIGSIRHRNIVSLHGYALSPYGNL 688 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~~----~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 688 (943)
..++|...+.||+|+||+||+|.+.. +..||+|.+.... ....+.+.+|+++++.++||||+++++++.+ +..+
T Consensus 10 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~~~ 88 (281)
T 3cc6_A 10 AREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEE-EPTW 88 (281)
T ss_dssp CGGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECS-SSCE
T ss_pred cccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEcC-CCCE
Confidence 45789999999999999999998653 2359999987543 3456778999999999999999999999865 4678
Q ss_pred EEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeeccccccccc
Q 002278 689 LFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCI 768 (943)
Q Consensus 689 lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~ 768 (943)
+||||+++++|.+++.. ....+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++..
T Consensus 89 ~v~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~ 163 (281)
T 3cc6_A 89 IIMELYPYGELGHYLER--NKNSLKVLTLVLYSLQICKAMAYLESI---NCVHRDIAVRNILVASPECVKLGDFGLSRYI 163 (281)
T ss_dssp EEEECCTTCBHHHHHHH--HTTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEEEETTEEEECCCCGGGCC
T ss_pred EEEecCCCCCHHHHHHh--ccccCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCccceEEECCCCcEEeCccCCCccc
Confidence 99999999999999963 234589999999999999999999999 9999999999999999999999999999876
Q ss_pred CCCCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHh-CCCCCCCCccHHHHHHHhccccccccccCcccc
Q 002278 769 PTAMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILT-GKKAVDNESNLHQLIMSKADDNTVMEAVDPEVS 847 (943)
Q Consensus 769 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 847 (943)
............+++.|+|||++.+..++.++||||||+++|||+| |+.||................... ....
T Consensus 164 ~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~~~~~~~~~~~~~~~~---~~~~-- 238 (281)
T 3cc6_A 164 EDEDYYKASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLENKDVIGVLEKGDRLP---KPDL-- 238 (281)
T ss_dssp ---------CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCGGGHHHHHHHTCCCC---CCTT--
T ss_pred ccccccccccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccCChHHHHHHHhcCCCCC---CCCC--
Confidence 5443333334457889999999999999999999999999999998 999997544333222221111100 0111
Q ss_pred cCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcC
Q 002278 848 VTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLL 888 (943)
Q Consensus 848 ~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~ 888 (943)
....+.+++..||+.||++|||+.+++++|+.+.
T Consensus 239 -------~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~ 272 (281)
T 3cc6_A 239 -------CPPVLYTLMTRCWDYDPSDRPRFTELVCSLSDVY 272 (281)
T ss_dssp -------CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred -------CCHHHHHHHHHHccCCchhCcCHHHHHHHHHHHH
Confidence 1245778999999999999999999999998754
No 170
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=100.00 E-value=9.9e-39 Score=371.69 Aligned_cols=254 Identities=21% Similarity=0.311 Sum_probs=213.0
Q ss_pred hhccccceEEeeeceEEEEEEEec-CCceEEEEEecccC---cccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEE
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQY---PHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLF 690 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 690 (943)
.++|+..+.||+|+||+||+|..+ +++.||||++.... ....+.+.+|++++++++||||+++++++.+....++|
T Consensus 25 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 104 (484)
T 3nyv_A 25 SDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYLV 104 (484)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred cCceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEEE
Confidence 468999999999999999999987 68899999986442 34567899999999999999999999999999999999
Q ss_pred EEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEE---CCCCceeecccccccc
Q 002278 691 YDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILI---DENFDAHLSDFGIARC 767 (943)
Q Consensus 691 ~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill---~~~~~~kl~DFGla~~ 767 (943)
|||+.+|+|.+++. ....+++..+..++.|++.||+|||++ +|+||||||+||++ +.++.+||+|||+++.
T Consensus 105 ~e~~~~~~L~~~~~---~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~ 178 (484)
T 3nyv_A 105 GEVYTGGELFDEII---SRKRFSEVDAARIIRQVLSGITYMHKN---KIVHRDLKPENLLLESKSKDANIRIIDFGLSTH 178 (484)
T ss_dssp ECCCCSCBHHHHHH---TCSCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESSSSTTCCEEECCTTHHHH
T ss_pred EecCCCCCHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHHHEEEecCCCCCcEEEEeeeeeEE
Confidence 99999999999886 345699999999999999999999999 99999999999999 4678999999999987
Q ss_pred cCCCCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCcccc
Q 002278 768 IPTAMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPEVS 847 (943)
Q Consensus 768 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 847 (943)
+..... .....||+.|+|||++.+ .++.++||||+||++|+|++|++||.+.....................++.+
T Consensus 179 ~~~~~~--~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~- 254 (484)
T 3nyv_A 179 FEASKK--MKDKIGTAYYIAPEVLHG-TYDEKCDVWSTGVILYILLSGCPPFNGANEYDILKKVEKGKYTFELPQWKKV- 254 (484)
T ss_dssp BCCCCS--HHHHTTGGGTCCHHHHHT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCSGGGGGS-
T ss_pred cccccc--cccCCCCccccCceeecC-CCCCcceeHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHcCCCCCCCcccccC-
Confidence 754432 223459999999999876 6999999999999999999999999987766554444333322221111222
Q ss_pred cCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhh
Q 002278 848 VTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVS 886 (943)
Q Consensus 848 ~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~ 886 (943)
...+.+++..||+.||++|||+.++++|-+-
T Consensus 255 --------s~~~~~li~~~L~~dp~~R~s~~e~l~h~~~ 285 (484)
T 3nyv_A 255 --------SESAKDLIRKMLTYVPSMRISARDALDHEWI 285 (484)
T ss_dssp --------CHHHHHHHHHHTCSSGGGSCCHHHHHTSHHH
T ss_pred --------CHHHHHHHHHHCCCChhHCcCHHHHhhChhh
Confidence 2457789999999999999999999997663
No 171
>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...
Probab=100.00 E-value=9.9e-39 Score=344.65 Aligned_cols=250 Identities=23% Similarity=0.325 Sum_probs=209.7
Q ss_pred hhccccceEEeeeceEEEEEEEec-CCceEEEEEecccC---cccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEE
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQY---PHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLF 690 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 690 (943)
.++|+..+.||+|+||.||+|... +++.||+|++.... ......+.+|+++++.++||||+++++++.+.+..++|
T Consensus 13 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 92 (284)
T 2vgo_A 13 IDDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYLM 92 (284)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEEEE
Confidence 468999999999999999999976 46789999985432 23456789999999999999999999999999999999
Q ss_pred EEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccCC
Q 002278 691 YDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIPT 770 (943)
Q Consensus 691 ~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~~ 770 (943)
|||+++|+|.+++. ....+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||++.....
T Consensus 93 ~e~~~~~~L~~~l~---~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~ 166 (284)
T 2vgo_A 93 LEFAPRGELYKELQ---KHGRFDEQRSATFMEELADALHYCHER---KVIHRDIKPENLLMGYKGELKIADFGWSVHAPS 166 (284)
T ss_dssp ECCCTTEEHHHHHH---HHSSCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECTTCCEEECCCTTCEECSS
T ss_pred EEeCCCCcHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEEcCCCCEEEecccccccCcc
Confidence 99999999999986 345689999999999999999999999 999999999999999999999999999976543
Q ss_pred CCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCcccccCc
Q 002278 771 AMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPEVSVTC 850 (943)
Q Consensus 771 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 850 (943)
.. .....|++.|+|||++.+..++.++||||||+++|||++|+.||...................+ +.+
T Consensus 167 ~~---~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~----~~~---- 235 (284)
T 2vgo_A 167 LR---RRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSHTETHRRIVNVDLKFP----PFL---- 235 (284)
T ss_dssp SC---BCCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSHHHHHHHHHTTCCCCC----TTS----
T ss_pred cc---cccccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCCCHhHHHHHHhccccCCC----CcC----
Confidence 22 2234589999999999999999999999999999999999999987665444333322221111 111
Q ss_pred cCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhh
Q 002278 851 VDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVS 886 (943)
Q Consensus 851 ~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~ 886 (943)
...+.+++..|++.||++|||+.++++|-+-
T Consensus 236 -----~~~~~~li~~~l~~~p~~Rps~~~ll~h~~~ 266 (284)
T 2vgo_A 236 -----SDGSKDLISKLLRYHPPQRLPLKGVMEHPWV 266 (284)
T ss_dssp -----CHHHHHHHHHHSCSSGGGSCCHHHHHTCHHH
T ss_pred -----CHHHHHHHHHHhhcCHhhCCCHHHHhhCHHH
Confidence 1456789999999999999999999987553
No 172
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*
Probab=100.00 E-value=8.1e-39 Score=350.04 Aligned_cols=267 Identities=22% Similarity=0.298 Sum_probs=201.6
Q ss_pred HhhccccceEEeeeceEEEEEEEec-CCceEEEEEecccC---cccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceE
Q 002278 614 STENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQY---PHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLL 689 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 689 (943)
..++|+..+.||+|+||.||+|... +++.||+|++.... ....+.+.+|+++++.++||||+++++++...+..++
T Consensus 30 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~l 109 (310)
T 2wqm_A 30 TLANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNI 109 (310)
T ss_dssp SGGGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEE
T ss_pred cccceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEEE
Confidence 3468999999999999999999975 68899999986532 3345678899999999999999999999999999999
Q ss_pred EEEEccCCChhhhccCCC-CCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeeccccccccc
Q 002278 690 FYDYMVNGSLWDLLHGPS-KKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCI 768 (943)
Q Consensus 690 v~e~~~~g~L~~~l~~~~-~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~ 768 (943)
||||+++|+|.+++.... ....+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++..
T Consensus 110 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dl~p~NIl~~~~~~~kl~Dfg~~~~~ 186 (310)
T 2wqm_A 110 VLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSR---RVMHRDIKPANVFITATGVVKLGDLGLGRFF 186 (310)
T ss_dssp EEECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCC------
T ss_pred EEecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHhhC---CeeCCCCcHHHEEEcCCCCEEEEeccceeee
Confidence 999999999999885311 234689999999999999999999999 9999999999999999999999999999876
Q ss_pred CCCCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCc-cHHHHHHHhccccccccccCcccc
Q 002278 769 PTAMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNES-NLHQLIMSKADDNTVMEAVDPEVS 847 (943)
Q Consensus 769 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 847 (943)
...... .....|++.|+|||++.+..++.++||||||+++|||++|+.||.+.. ........... ..........
T Consensus 187 ~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~-- 262 (310)
T 2wqm_A 187 SSKTTA-AHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMNLYSLCKKIEQ-CDYPPLPSDH-- 262 (310)
T ss_dssp -------------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC---CCHHHHHHHHHT-TCSCCCCTTT--
T ss_pred cCCCcc-ccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchhHHHHHHHhhc-ccCCCCcccc--
Confidence 443222 223458999999999999999999999999999999999999997543 22222222211 1111111111
Q ss_pred cCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCCCCCCc
Q 002278 848 VTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLPAPPAK 894 (943)
Q Consensus 848 ~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~~~~~~ 894 (943)
....+.+++..||+.||++|||+.++++.++.+.+....+
T Consensus 263 -------~~~~l~~li~~~l~~dp~~Rps~~~il~~l~~l~~~~~~~ 302 (310)
T 2wqm_A 263 -------YSEELRQLVNMCINPDPEKRPDVTYVYDVAKRMHACTASS 302 (310)
T ss_dssp -------SCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHC--
T ss_pred -------cCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHhhhhh
Confidence 1246778999999999999999999999999887655443
No 173
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*
Probab=100.00 E-value=1.4e-38 Score=370.31 Aligned_cols=255 Identities=22% Similarity=0.321 Sum_probs=210.7
Q ss_pred HhhccccceEEeeeceEEEEEEEec-CCceEEEEEeccc--CcccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEE
Q 002278 614 STENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQ--YPHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLF 690 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~--~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 690 (943)
..++|+..+.||+|+||+||+|.++ +++.||||++... .......+.+|++++++++||||+++++++.+....++|
T Consensus 20 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv 99 (486)
T 3mwu_A 20 FAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIV 99 (486)
T ss_dssp HHHHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhcceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEE
Confidence 3568999999999999999999986 6889999998543 234567889999999999999999999999999999999
Q ss_pred EEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEEC---CCCceeecccccccc
Q 002278 691 YDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILID---ENFDAHLSDFGIARC 767 (943)
Q Consensus 691 ~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~---~~~~~kl~DFGla~~ 767 (943)
|||+.+|+|.+.+. ....+++..+..++.|++.||+|||+. +|+||||||+||+++ .++.+||+|||+++.
T Consensus 100 ~e~~~~~~L~~~~~---~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~ 173 (486)
T 3mwu_A 100 GELYTGGELFDEII---KRKRFSEHDAARIIKQVFSGITYMHKH---NIVHRDLKPENILLESKEKDCDIKIIDFGLSTC 173 (486)
T ss_dssp ECCCCSCBHHHHHH---HHSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEESSSSTTCCEEECSCSCTTT
T ss_pred EEcCCCCcHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCchHHEEEecCCCCCCEEEEECCcCeE
Confidence 99999999999886 345699999999999999999999999 999999999999995 456799999999987
Q ss_pred cCCCCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCcccc
Q 002278 768 IPTAMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPEVS 847 (943)
Q Consensus 768 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 847 (943)
...... .....||+.|+|||++.+ .++.++||||+||++|+|++|+.||.+.....................++.+
T Consensus 174 ~~~~~~--~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~~- 249 (486)
T 3mwu_A 174 FQQNTK--MKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNEYDILKRVETGKYAFDLPQWRTI- 249 (486)
T ss_dssp BCCC------CCTTGGGGCCGGGGGS-CCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCCCSCSGGGGGS-
T ss_pred CCCCCc--cCCCcCCCCCCCHHHhCC-CCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHhCCCCCCCcccCCC-
Confidence 654322 233469999999999876 5999999999999999999999999887665554444333222221111222
Q ss_pred cCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhh
Q 002278 848 VTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVS 886 (943)
Q Consensus 848 ~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~ 886 (943)
...+.+++..||+.||++|||+.++++|-+-
T Consensus 250 --------s~~~~~li~~~L~~dp~~R~t~~~~l~hp~~ 280 (486)
T 3mwu_A 250 --------SDDAKDLIRKMLTFHPSLRITATQCLEHPWI 280 (486)
T ss_dssp --------CHHHHHHHHHHTCSSTTTSCCHHHHHHCHHH
T ss_pred --------CHHHHHHHHHHcCCChhhCcCHHHHhcCHhh
Confidence 1456789999999999999999999998653
No 174
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*
Probab=100.00 E-value=9.4e-39 Score=361.15 Aligned_cols=268 Identities=19% Similarity=0.240 Sum_probs=207.1
Q ss_pred HhhccccceEEeee--ceEEEEEEEec-CCceEEEEEecccC--cccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcce
Q 002278 614 STENLSEKYIVGYG--ASSTVYKCALK-NSRPIAVKKLYNQY--PHNLREFETELETIGSIRHRNIVSLHGYALSPYGNL 688 (943)
Q Consensus 614 ~~~~~~~~~~lG~G--~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 688 (943)
..++|+..+.||+| +||+||+|+++ +++.||||++.... ....+.+.+|+++++.++|||||++++++.+++..+
T Consensus 23 ~~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~ 102 (389)
T 3gni_B 23 EGGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELW 102 (389)
T ss_dssp CGGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEE
T ss_pred CCCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCEEE
Confidence 45789999999999 99999999987 68899999986543 233467888999999999999999999999999999
Q ss_pred EEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeeccccccccc
Q 002278 689 LFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCI 768 (943)
Q Consensus 689 lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~ 768 (943)
+||||+++|+|.+++... ....+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||.+...
T Consensus 103 lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~NIll~~~~~~kl~dfg~~~~~ 178 (389)
T 3gni_B 103 VVTSFMAYGSAKDLICTH-FMDGMNELAIAYILQGVLKALDYIHHM---GYVHRSVKASHILISVDGKVYLSGLRSNLSM 178 (389)
T ss_dssp EEEECCTTCBHHHHHHHT-CTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCGGGCEEC
T ss_pred EEEEccCCCCHHHHHhhh-cccCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEcccccceee
Confidence 999999999999998642 224589999999999999999999999 9999999999999999999999999998654
Q ss_pred CCCC------CceeeeEecccceeCcccccc--CCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccc-
Q 002278 769 PTAM------PHASTFVLGTIGYIDPEYAHT--SRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVM- 839 (943)
Q Consensus 769 ~~~~------~~~~~~~~gt~~y~aPE~~~~--~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~- 839 (943)
.... ........||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+..................
T Consensus 179 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~ 258 (389)
T 3gni_B 179 ISHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQMLLEKLNGTVPCLL 258 (389)
T ss_dssp EETTEECSCBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTTTTCCSTTHHHHC---------
T ss_pred ccccccccccccccccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHhcCCCCccc
Confidence 2211 011122358999999999987 5799999999999999999999999986554443332221110000
Q ss_pred c-------cc-------------C------------cccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 002278 840 E-------AV-------------D------------PEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLV 885 (943)
Q Consensus 840 ~-------~~-------------~------------~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~ 885 (943)
+ .. . ...............+.+++.+||+.||++|||+.|+++|-+
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~ell~hp~ 336 (389)
T 3gni_B 259 DTSTIPAEELTMSPSRSVANSGLSDSLTTSTPRPSNGDSPSHPYHRTFSPHFHHFVEQCLQRNPDARPSASTLLNHSF 336 (389)
T ss_dssp -----------------------------------------------CCHHHHHHHHHHTCSCTTTSCCHHHHTTSGG
T ss_pred cccccccccccccccccccccccccccccCccccccCCCCCCccccccCHHHHHHHHHHhhcCcccCCCHHHHhcCHH
Confidence 0 00 0 000000000112246788999999999999999999998744
No 175
>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A
Probab=100.00 E-value=7.8e-39 Score=351.25 Aligned_cols=256 Identities=21% Similarity=0.265 Sum_probs=200.0
Q ss_pred hhccccc-eEEeeeceEEEEEEEec-CCceEEEEEecccCcccHHHHHHHHHHHhcC-CCCCcceeeeEEecCCcceEEE
Q 002278 615 TENLSEK-YIVGYGASSTVYKCALK-NSRPIAVKKLYNQYPHNLREFETELETIGSI-RHRNIVSLHGYALSPYGNLLFY 691 (943)
Q Consensus 615 ~~~~~~~-~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ 691 (943)
.+.|.+. +.||+|+||+||+|... +++.||||++........+.+.+|++++.++ +||||+++++++.+.+..++||
T Consensus 11 ~~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~ 90 (316)
T 2ac3_A 11 EDVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYLVF 90 (316)
T ss_dssp TTSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred ceeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEEE
Confidence 3567764 67999999999999965 6889999999776666678899999999885 7999999999999999999999
Q ss_pred EEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCc---eeeccccccccc
Q 002278 692 DYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFD---AHLSDFGIARCI 768 (943)
Q Consensus 692 e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~---~kl~DFGla~~~ 768 (943)
||+++|+|.+++. ....+++..+..++.|++.||+|||+. +|+||||||+||+++.++. +||+|||+++..
T Consensus 91 e~~~~~~L~~~l~---~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~~ 164 (316)
T 2ac3_A 91 EKMRGGSILSHIH---KRRHFNELEASVVVQDVASALDFLHNK---GIAHRDLKPENILCEHPNQVSPVKICDFDLGSGI 164 (316)
T ss_dssp ECCTTCBHHHHHH---HHSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEESCSSSSCSEEECCTTCCC--
T ss_pred EcCCCCcHHHHHh---ccCCCCHHHHHHHHHHHHHHHHHHHhC---CceeCCCCHHHEEEccCCCcCceEEEEccCcccc
Confidence 9999999999996 345689999999999999999999999 9999999999999998766 999999999765
Q ss_pred CCCCC------ceeeeEecccceeCcccccc-----CCCCCcchhhhHHHHHHHHHhCCCCCCCCccH------------
Q 002278 769 PTAMP------HASTFVLGTIGYIDPEYAHT-----SRLNEKSDVYSFGIVLLEILTGKKAVDNESNL------------ 825 (943)
Q Consensus 769 ~~~~~------~~~~~~~gt~~y~aPE~~~~-----~~~~~~~DvwSlGvil~elltG~~p~~~~~~~------------ 825 (943)
..... .......||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+....
T Consensus 165 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~ 244 (316)
T 2ac3_A 165 KLNGDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGEACPA 244 (316)
T ss_dssp -----------------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCCSCSCC----CCHH
T ss_pred ccCCccccccccccccccCCcCccChHHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCcccccccccccccccchh
Confidence 32211 11223459999999999875 45889999999999999999999999754321
Q ss_pred --HHHHHH-hccccccccccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 002278 826 --HQLIMS-KADDNTVMEAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLV 885 (943)
Q Consensus 826 --~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~ 885 (943)
...... .......+....+. ....+.+++.+|++.||++|||+.|+++|-+
T Consensus 245 ~~~~~~~~i~~~~~~~~~~~~~~---------~~~~~~~li~~~L~~dP~~Rps~~e~l~hp~ 298 (316)
T 2ac3_A 245 CQNMLFESIQEGKYEFPDKDWAH---------ISCAAKDLISKLLVRDAKQRLSAAQVLQHPW 298 (316)
T ss_dssp HHHHHHHHHHHCCCCCCHHHHTT---------SCHHHHHHHHHHSCSSTTTSCCHHHHHHSTT
T ss_pred HHHHHHHHHhccCcccCchhccc---------CCHHHHHHHHHHhhCChhhCCCHHHHhcChh
Confidence 111111 11111111110011 1246779999999999999999999999855
No 176
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}
Probab=100.00 E-value=8.3e-39 Score=352.16 Aligned_cols=259 Identities=22% Similarity=0.338 Sum_probs=202.3
Q ss_pred hhccccceEEeeeceEEEEEEEec-CCce----EEEEEeccc-CcccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcce
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK-NSRP----IAVKKLYNQ-YPHNLREFETELETIGSIRHRNIVSLHGYALSPYGNL 688 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~----vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 688 (943)
.++|+..+.||+|+||+||+|.+. +++. ||+|.+... .....+.+.+|+++++.++||||+++++++..+. .+
T Consensus 14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-~~ 92 (327)
T 3lzb_A 14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-VQ 92 (327)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSS-EE
T ss_pred HhHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCC-ce
Confidence 467999999999999999999975 3443 577776543 3456788999999999999999999999998754 78
Q ss_pred EEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeeccccccccc
Q 002278 689 LFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCI 768 (943)
Q Consensus 689 lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~ 768 (943)
+|+||+++|+|.+++.. ....+++..++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++..
T Consensus 93 ~v~~~~~~g~L~~~l~~--~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kL~DfG~a~~~ 167 (327)
T 3lzb_A 93 LITQLMPFGCLLDYVRE--HKDNIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKITDFGLAKLL 167 (327)
T ss_dssp EEECCCSSCBHHHHHHH--TTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEETTEEEECCTTC----
T ss_pred EEEEecCCCcHHHHHHh--cCCCCCHHHHHHHHHHHHHHHHHHhhC---CCcCCCCCHHHEEEcCCCCEEEccCcceeEc
Confidence 99999999999999863 234689999999999999999999999 9999999999999999999999999999876
Q ss_pred CCCCC-ceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHh-CCCCCCCCccHHHHHHHhccccccccccCccc
Q 002278 769 PTAMP-HASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILT-GKKAVDNESNLHQLIMSKADDNTVMEAVDPEV 846 (943)
Q Consensus 769 ~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 846 (943)
..... .......||+.|+|||++.+..++.++|||||||++|||++ |+.||.+............... .. ..+..
T Consensus 168 ~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~~~~~~~~~~~~-~~--~~~~~ 244 (327)
T 3lzb_A 168 GAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPASEISSILEKGER-LP--QPPIC 244 (327)
T ss_dssp ------------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGGGHHHHHHTTCC-CC--CCTTB
T ss_pred cCccccccccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCCC-CC--CCccC
Confidence 43322 12233447889999999999999999999999999999999 9999986544332222211111 00 11111
Q ss_pred ccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCCCC
Q 002278 847 SVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLPAP 891 (943)
Q Consensus 847 ~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~~~ 891 (943)
...+.+++..||+.||++||++.|+++.|+.+...+
T Consensus 245 ---------~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~ 280 (327)
T 3lzb_A 245 ---------TIDVYMIMRKCWMIDADSRPKFRELIIEFSKMARDP 280 (327)
T ss_dssp ---------CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHTSH
T ss_pred ---------CHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhCc
Confidence 245778999999999999999999999999877543
No 177
>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=8.8e-39 Score=349.37 Aligned_cols=265 Identities=23% Similarity=0.200 Sum_probs=204.9
Q ss_pred HhhccccceEEeeeceEEEEEEEec-CCceEEEEEecccC-----cccHHHHHHHHHHHhcC---CCCCcceeeeEEecC
Q 002278 614 STENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQY-----PHNLREFETELETIGSI---RHRNIVSLHGYALSP 684 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~-----~~~~~~~~~E~~~l~~l---~h~niv~l~~~~~~~ 684 (943)
..++|+..+.||+|+||+||+|++. +++.||+|++.... ......+.+|+++++.+ +||||+++++++...
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~ 86 (308)
T 3g33_A 7 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATS 86 (308)
T ss_dssp ---CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEEC
T ss_pred cccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeecc
Confidence 4678999999999999999999975 67899999986432 12235667788777766 499999999999876
Q ss_pred C-----cceEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceee
Q 002278 685 Y-----GNLLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHL 759 (943)
Q Consensus 685 ~-----~~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl 759 (943)
. ..++||||+. |+|.+++.... ...+++.++..++.|++.||+|||++ +|+||||||+||+++.++.+||
T Consensus 87 ~~~~~~~~~lv~e~~~-~~L~~~~~~~~-~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~Nil~~~~~~~kl 161 (308)
T 3g33_A 87 RTDREIKVTLVFEHVD-QDLRTYLDKAP-PPGLPAETIKDLMRQFLRGLDFLHAN---CIVHRDLKPENILVTSGGTVKL 161 (308)
T ss_dssp CSSSEEEEEEEEECCC-CBHHHHHHTCC-TTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCTTTEEECTTSCEEE
T ss_pred CCCCceeEEEEehhhh-cCHHHHHhhcc-CCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEcCCCCEEE
Confidence 5 3689999996 69999987432 23489999999999999999999999 9999999999999999999999
Q ss_pred cccccccccCCCCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccc
Q 002278 760 SDFGIARCIPTAMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVM 839 (943)
Q Consensus 760 ~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~ 839 (943)
+|||+++....... .....||+.|+|||++.+..++.++||||+||++|||++|+.||.+..............+...
T Consensus 162 ~Dfg~a~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~ 239 (308)
T 3g33_A 162 ADFGLARIYSYQMA--LTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEADQLGKIFDLIGLPP 239 (308)
T ss_dssp CSCSCTTTSTTCCC--SGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCSSHHHHHHHHHHHHCCCC
T ss_pred eeCccccccCCCcc--cCCccccccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCC
Confidence 99999987654322 2334689999999999999999999999999999999999999988776655544433222111
Q ss_pred cccCcccc--------cC-ccC-----HHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 002278 840 EAVDPEVS--------VT-CVD-----LSAVRKTFQLALLCTKRYPSERPTMQEVARVLV 885 (943)
Q Consensus 840 ~~~~~~~~--------~~-~~~-----~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~ 885 (943)
...++... .. ... ......+.+++.+|++.||++|||+.|+++|-+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h~~ 299 (308)
T 3g33_A 240 EDDWPRDVSLPRGAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQHSY 299 (308)
T ss_dssp TTTSCSSCSSCGGGSCCCCCCCHHHHSCSCCHHHHHHHHHHTCSSTTTSCCHHHHHTSTT
T ss_pred hhhccchhhccccccCCCCCCcHHHhCccccHHHHHHHHHHhcCCCccCCCHHHHhcCcc
Confidence 11111000 00 000 011256778999999999999999999998754
No 178
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*
Probab=100.00 E-value=1.2e-38 Score=347.40 Aligned_cols=258 Identities=25% Similarity=0.397 Sum_probs=205.0
Q ss_pred hhccccceEEeeeceEEEEEEEe-----cCCceEEEEEecccC-cccHHHHHHHHHHHhcCCCCCcceeeeEEecC--Cc
Q 002278 615 TENLSEKYIVGYGASSTVYKCAL-----KNSRPIAVKKLYNQY-PHNLREFETELETIGSIRHRNIVSLHGYALSP--YG 686 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~-----~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~--~~ 686 (943)
.+.|+..+.||+|+||.||+|++ ..++.||+|++.... ....+.+.+|+++++.++||||+++++++... ..
T Consensus 20 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~ 99 (302)
T 4e5w_A 20 KRFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNG 99 (302)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---CC
T ss_pred hhhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCce
Confidence 45688999999999999999983 357899999987443 44567899999999999999999999999876 56
Q ss_pred ceEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeeccccccc
Q 002278 687 NLLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIAR 766 (943)
Q Consensus 687 ~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~ 766 (943)
.++||||+++|+|.+++.. ....+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++
T Consensus 100 ~~lv~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~ 174 (302)
T 4e5w_A 100 IKLIMEFLPSGSLKEYLPK--NKNKINLKQQLKYAVQICKGMDYLGSR---QYVHRDLAARNVLVESEHQVKIGDFGLTK 174 (302)
T ss_dssp EEEEEECCTTCBHHHHHHH--HTTTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCCTTCE
T ss_pred EEEEEEeCCCCcHHHHHHh--ccccCCHHHHHHHHHHHHHHHHHhhcC---CcccCCCchheEEEcCCCCEEECcccccc
Confidence 7999999999999999853 335689999999999999999999999 99999999999999999999999999998
Q ss_pred ccCCCCCc--eeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccH--------------HHHHH
Q 002278 767 CIPTAMPH--ASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNL--------------HQLIM 830 (943)
Q Consensus 767 ~~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~--------------~~~~~ 830 (943)
........ ......||..|+|||++.+..++.++||||+|+++|||+||+.|+...... .....
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (302)
T 4e5w_A 175 AIETDKEYYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMALFLKMIGPTHGQMTVTRLVN 254 (302)
T ss_dssp ECCTTCCEEECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCGGGHHHHHHH
T ss_pred cccCCCcceeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCcchhhHHhhccCCcccccCHHHHHH
Confidence 77544321 122334788899999999999999999999999999999999987532211 11111
Q ss_pred HhccccccccccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcC
Q 002278 831 SKADDNTVMEAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLL 888 (943)
Q Consensus 831 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~ 888 (943)
...... ....+. .....+.+++..||+.||++|||+.++++.|+.+.
T Consensus 255 ~~~~~~------~~~~~~-----~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~ll 301 (302)
T 4e5w_A 255 TLKEGK------RLPCPP-----NCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFEALL 301 (302)
T ss_dssp HHHTTC------CCCCCT-----TCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHH
T ss_pred HHhccC------CCCCCC-----CCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHh
Confidence 111100 111111 11256789999999999999999999999998753
No 179
>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...
Probab=100.00 E-value=1.3e-38 Score=349.58 Aligned_cols=269 Identities=25% Similarity=0.318 Sum_probs=214.9
Q ss_pred CHHHHHHHhhccccceEEeeeceEEEEEEEec------CCceEEEEEecccCc-ccHHHHHHHHHHHhcC-CCCCcceee
Q 002278 607 TFDDIMRSTENLSEKYIVGYGASSTVYKCALK------NSRPIAVKKLYNQYP-HNLREFETELETIGSI-RHRNIVSLH 678 (943)
Q Consensus 607 ~~~~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~------~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l-~h~niv~l~ 678 (943)
.........++|+..+.||+|+||+||+|.+. +++.||||++..... ...+.+.+|+++++++ +||||++++
T Consensus 18 ~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~ 97 (316)
T 2xir_A 18 DASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLL 97 (316)
T ss_dssp CHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred cccceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeEE
Confidence 34444456789999999999999999999852 457899999875433 3345788999999999 699999999
Q ss_pred eEEecCC-cceEEEEEccCCChhhhccCCCC-------------CccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCC
Q 002278 679 GYALSPY-GNLLFYDYMVNGSLWDLLHGPSK-------------KVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDV 744 (943)
Q Consensus 679 ~~~~~~~-~~~lv~e~~~~g~L~~~l~~~~~-------------~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dl 744 (943)
+++...+ ..++||||+++|+|.+++..... ...+++..+..++.|++.||+|||+. +|+||||
T Consensus 98 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~i~H~di 174 (316)
T 2xir_A 98 GACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDL 174 (316)
T ss_dssp EEECCTTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHHT---TCCCSCC
T ss_pred EEEecCCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHhC---CcccccC
Confidence 9998765 48999999999999999975332 12388999999999999999999999 9999999
Q ss_pred CCccEEECCCCceeecccccccccCCCCCc-eeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHh-CCCCCCCC
Q 002278 745 KSSNILIDENFDAHLSDFGIARCIPTAMPH-ASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILT-GKKAVDNE 822 (943)
Q Consensus 745 kp~Nill~~~~~~kl~DFGla~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-G~~p~~~~ 822 (943)
||+||+++.++.+||+|||+++........ ......||+.|+|||++.+..++.++|||||||++|||+| |+.||.+.
T Consensus 175 kp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~ 254 (316)
T 2xir_A 175 AARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGV 254 (316)
T ss_dssp SGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTC
T ss_pred ccceEEECCCCCEEECCCccccccccCccceeccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHhCCCCCCccc
Confidence 999999999999999999999876543322 2334568899999999999999999999999999999998 99999865
Q ss_pred ccHHHHHHHhccccccccccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCC
Q 002278 823 SNLHQLIMSKADDNTVMEAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLP 889 (943)
Q Consensus 823 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~ 889 (943)
................ ..... ....+.+++..||+.||++|||+.+++++|+.+..
T Consensus 255 ~~~~~~~~~~~~~~~~--~~~~~---------~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~ 310 (316)
T 2xir_A 255 KIDEEFCRRLKEGTRM--RAPDY---------TTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQ 310 (316)
T ss_dssp CCSHHHHHHHHHTCCC--CCCTT---------CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred chhHHHHHHhccCccC--CCCCC---------CCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHh
Confidence 5433333222211110 01111 12467789999999999999999999999987653
No 180
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...
Probab=100.00 E-value=3.8e-39 Score=354.74 Aligned_cols=267 Identities=23% Similarity=0.338 Sum_probs=214.8
Q ss_pred HHHHHHhhccccceEEeeeceEEEEEEEec------CCceEEEEEecccC-cccHHHHHHHHHHHhcCCCCCcceeeeEE
Q 002278 609 DDIMRSTENLSEKYIVGYGASSTVYKCALK------NSRPIAVKKLYNQY-PHNLREFETELETIGSIRHRNIVSLHGYA 681 (943)
Q Consensus 609 ~~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~ 681 (943)
++.....++|+..+.||+|+||.||+|.++ .++.||+|++.... ......+.+|+++++.++||||+++++++
T Consensus 18 ~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~ 97 (322)
T 1p4o_A 18 DEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVV 97 (322)
T ss_dssp CTTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEE
T ss_pred hhhcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeeeEEEE
Confidence 344456789999999999999999999865 36789999986543 23445688999999999999999999999
Q ss_pred ecCCcceEEEEEccCCChhhhccCCC-------CCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCC
Q 002278 682 LSPYGNLLFYDYMVNGSLWDLLHGPS-------KKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDEN 754 (943)
Q Consensus 682 ~~~~~~~lv~e~~~~g~L~~~l~~~~-------~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~ 754 (943)
.+....++||||+++|+|.+++.... ....+++..++.++.|++.||+|||++ +|+||||||+||+++.+
T Consensus 98 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~NIli~~~ 174 (322)
T 1p4o_A 98 SQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAARNCMVAED 174 (322)
T ss_dssp CSSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCSGGGEEECTT
T ss_pred ccCCccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHHC---CCccCCCccceEEEcCC
Confidence 99999999999999999999986321 124578999999999999999999999 99999999999999999
Q ss_pred CceeecccccccccCCCCCc-eeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHh-CCCCCCCCccHHHHHHHh
Q 002278 755 FDAHLSDFGIARCIPTAMPH-ASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILT-GKKAVDNESNLHQLIMSK 832 (943)
Q Consensus 755 ~~~kl~DFGla~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-G~~p~~~~~~~~~~~~~~ 832 (943)
+.+||+|||+++........ ......||+.|+|||++.+..++.++||||+||++|||+| |+.||.+...........
T Consensus 175 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~ 254 (322)
T 1p4o_A 175 FTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLSNEQVLRFVM 254 (322)
T ss_dssp CCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCHHHHHHHHH
T ss_pred CeEEECcCccccccccccccccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCccccCCHHHHHHHHH
Confidence 99999999999865433211 1122347889999999999999999999999999999999 899998765433322222
Q ss_pred ccccccccccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCCC
Q 002278 833 ADDNTVMEAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLPA 890 (943)
Q Consensus 833 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~~ 890 (943)
.... . ...+. ....+.+++..||+.||++|||+.+++++|+.....
T Consensus 255 ~~~~--~-~~~~~---------~~~~l~~li~~~l~~dp~~Rps~~e~l~~L~~~~~~ 300 (322)
T 1p4o_A 255 EGGL--L-DKPDN---------CPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEP 300 (322)
T ss_dssp TTCC--C-CCCTT---------CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGSCT
T ss_pred cCCc--C-CCCCC---------CCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHhhcc
Confidence 2111 0 01111 124677899999999999999999999999987654
No 181
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=3.8e-39 Score=360.62 Aligned_cols=271 Identities=21% Similarity=0.262 Sum_probs=212.6
Q ss_pred ccCHHHHHHHhhccccceEEeeeceEEEEEEEec-CCceEEEEEecccCcccHHHHHHHHHHHhcCC-----CCCcceee
Q 002278 605 IHTFDDIMRSTENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYPHNLREFETELETIGSIR-----HRNIVSLH 678 (943)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-----h~niv~l~ 678 (943)
.+++.+.....++|...+.||+|+||+||+|++. +++.||||++... ......+..|+++++.++ ||||++++
T Consensus 24 ~~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~h~~iv~~~ 102 (360)
T 3llt_A 24 HFSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNI-KKYTRSAKIEADILKKIQNDDINNNNIVKYH 102 (360)
T ss_dssp SCCCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC-HHHHHHHHHHHHHHHHTCCCSTTGGGBCCEE
T ss_pred eeeeecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccc-hhhhhhhHHHHHHHHHhcccCCCCCCeeccc
Confidence 3444444456789999999999999999999985 5788999998642 334566788999999886 99999999
Q ss_pred eEEecCCcceEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECC-----
Q 002278 679 GYALSPYGNLLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDE----- 753 (943)
Q Consensus 679 ~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~----- 753 (943)
+++...+..++||||+ +++|.+++... ....+++.++..++.|++.||+|||+. +|+||||||+||+++.
T Consensus 103 ~~~~~~~~~~lv~e~~-~~~L~~~~~~~-~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~~ 177 (360)
T 3llt_A 103 GKFMYYDHMCLIFEPL-GPSLYEIITRN-NYNGFHIEDIKLYCIEILKALNYLRKM---SLTHTDLKPENILLDDPYFEK 177 (360)
T ss_dssp EEEEETTEEEEEECCC-CCBHHHHHHHT-TTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCTTCCE
T ss_pred ceeeECCeeEEEEcCC-CCCHHHHHHhc-CCCCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCcccEEEccccccc
Confidence 9999999999999999 99999998643 223589999999999999999999999 9999999999999975
Q ss_pred --------------------CCceeecccccccccCCCCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHH
Q 002278 754 --------------------NFDAHLSDFGIARCIPTAMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEIL 813 (943)
Q Consensus 754 --------------------~~~~kl~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ell 813 (943)
++.+||+|||+|+...... ....||+.|+|||++.+..++.++||||+||++|||+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~----~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell 253 (360)
T 3llt_A 178 SLITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSDYH----GSIINTRQYRAPEVILNLGWDVSSDMWSFGCVLAELY 253 (360)
T ss_dssp EEEEEECTTTCCEEEEEEESCCCEEECCCTTCEETTSCC----CSCCSCGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHH
T ss_pred cccchhcccccccccccccCCCCEEEEeccCceecCCCC----cCccCcccccCcHHHcCCCCCCccchHHHHHHHHHHH
Confidence 7899999999998654332 2346899999999999999999999999999999999
Q ss_pred hCCCCCCCCccHHHHHHHhcccccccccc------------------CcccccCccCHHH---------------HHHHH
Q 002278 814 TGKKAVDNESNLHQLIMSKADDNTVMEAV------------------DPEVSVTCVDLSA---------------VRKTF 860 (943)
Q Consensus 814 tG~~p~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~---------------~~~l~ 860 (943)
||+.||...................+... ....+........ ...+.
T Consensus 254 ~g~~pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 333 (360)
T 3llt_A 254 TGSLLFRTHEHMEHLAMMESIIQPIPKNMLYEATKTNGSKYVNKDELKLAWPENASSINSIKHVKKCLPLYKIIKHELFC 333 (360)
T ss_dssp HSSCSCCCSSHHHHHHHHHHHTCCCCHHHHHHHTTSGGGGGEETTTTEECTTTTCSCHHHHHHHHTCCCHHHHCCCHHHH
T ss_pred HCCCCCCCCcHHHHHHHHHHhcCCCCHHHHhhhhhccCccccCcccceecCcccccchhhhhhhhhcccccccchHHHHH
Confidence 99999987665544433322222111100 0000000000000 14567
Q ss_pred HHHHHccCCCCCCCCCHHHHHHHHh
Q 002278 861 QLALLCTKRYPSERPTMQEVARVLV 885 (943)
Q Consensus 861 ~l~~~cl~~dP~~RPt~~el~~~L~ 885 (943)
+++..||+.||++|||+.|+++|-+
T Consensus 334 ~li~~~L~~dP~~Rpta~elL~hp~ 358 (360)
T 3llt_A 334 DFLYSILQIDPTLRPSPAELLKHKF 358 (360)
T ss_dssp HHHHHHCCSSGGGSCCHHHHTTSGG
T ss_pred HHHHHHhcCChhhCCCHHHHhcCcc
Confidence 9999999999999999999988743
No 182
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=2.2e-38 Score=349.85 Aligned_cols=260 Identities=27% Similarity=0.432 Sum_probs=204.4
Q ss_pred hhccccceEEeeeceEEEEEEEecCC-----ceEEEEEecccC-cccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcce
Q 002278 615 TENLSEKYIVGYGASSTVYKCALKNS-----RPIAVKKLYNQY-PHNLREFETELETIGSIRHRNIVSLHGYALSPYGNL 688 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~~~-----~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 688 (943)
.++|+..+.||+|+||.||+|..+.. ..||+|++.... ......+.+|+++++.++||||+++++++...+..+
T Consensus 43 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 122 (333)
T 1mqb_A 43 PSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMM 122 (333)
T ss_dssp TTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEE
T ss_pred hHHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCCcE
Confidence 45677889999999999999987632 359999987543 234457889999999999999999999999999999
Q ss_pred EEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeeccccccccc
Q 002278 689 LFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCI 768 (943)
Q Consensus 689 lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~ 768 (943)
+||||+++|+|.+++.. ....+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++..
T Consensus 123 lv~e~~~~~~L~~~l~~--~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~ 197 (333)
T 1mqb_A 123 IITEYMENGALDKFLRE--KDGEFSVLQLVGMLRGIAAGMKYLANM---NYVHRDLAARNILVNSNLVCKVSDFGLSRVL 197 (333)
T ss_dssp EEEECCTTEEHHHHHHH--TTTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCCCC----
T ss_pred EEEeCCCCCcHHHHHHh--CCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChheEEECCCCcEEECCCCcchhh
Confidence 99999999999999863 235689999999999999999999999 9999999999999999999999999999876
Q ss_pred CCCCCc--eeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHh-CCCCCCCCccHHHHHHHhccccccccccCcc
Q 002278 769 PTAMPH--ASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILT-GKKAVDNESNLHQLIMSKADDNTVMEAVDPE 845 (943)
Q Consensus 769 ~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 845 (943)
...... ......+|+.|+|||++.+..++.++|||||||++|||++ |+.||............... .... ....
T Consensus 198 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~~~~~~~~~~-~~~~--~~~~ 274 (333)
T 1mqb_A 198 EDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNHEVMKAINDG-FRLP--TPMD 274 (333)
T ss_dssp -------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTT-CCCC--CCTT
T ss_pred ccccccccccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccCCHHHHHHHHHCC-CcCC--Cccc
Confidence 543221 1222346789999999999999999999999999999999 99999866544332222211 1110 0111
Q ss_pred cccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCCCC
Q 002278 846 VSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLPAP 891 (943)
Q Consensus 846 ~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~~~ 891 (943)
....+.+++..||+.||++||++.+++++|+.+....
T Consensus 275 ---------~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~~~ 311 (333)
T 1mqb_A 275 ---------CPSAIYQLMMQCWQQERARRPKFADIVSILDKLIRAP 311 (333)
T ss_dssp ---------CBHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHSG
T ss_pred ---------CCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhcc
Confidence 1246788999999999999999999999998876543
No 183
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Probab=100.00 E-value=1e-38 Score=354.60 Aligned_cols=264 Identities=16% Similarity=0.163 Sum_probs=198.6
Q ss_pred hhccccceEEeeeceEEEEEEEec----CCceEEEEEecccCcc-----------cHHHHHHHHHHHhcCCCCCcceeee
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK----NSRPIAVKKLYNQYPH-----------NLREFETELETIGSIRHRNIVSLHG 679 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~----~~~~vavK~~~~~~~~-----------~~~~~~~E~~~l~~l~h~niv~l~~ 679 (943)
.++|...+.||+|+||+||+|.+. .+..||+|++...... ....+.+|+..++.++||||+++++
T Consensus 36 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~ 115 (345)
T 2v62_A 36 GNQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYG 115 (345)
T ss_dssp SCEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEE
T ss_pred CceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeec
Confidence 468999999999999999999986 4678999998654321 1123567888999999999999999
Q ss_pred EEec----CCcceEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCC
Q 002278 680 YALS----PYGNLLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENF 755 (943)
Q Consensus 680 ~~~~----~~~~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~ 755 (943)
++.. ....++||||+ +++|.+++. ....+++.+++.++.|++.||+|||+. +|+||||||+||+++.++
T Consensus 116 ~~~~~~~~~~~~~lv~e~~-~~~L~~~l~---~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~ 188 (345)
T 2v62_A 116 SGLTEFKGRSYRFMVMERL-GIDLQKISG---QNGTFKKSTVLQLGIRMLDVLEYIHEN---EYVHGDIKAANLLLGYKN 188 (345)
T ss_dssp EEEEESSSCEEEEEEEECE-EEEHHHHCB---GGGBCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEESSS
T ss_pred ccccccCCCcEEEEEEecc-CCCHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCcCHHHEEEccCC
Confidence 9987 67789999999 999999997 334799999999999999999999999 999999999999999877
Q ss_pred --ceeecccccccccCCCCC------ceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCcc-HH
Q 002278 756 --DAHLSDFGIARCIPTAMP------HASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESN-LH 826 (943)
Q Consensus 756 --~~kl~DFGla~~~~~~~~------~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~-~~ 826 (943)
.+||+|||+++.+..... .......||+.|+|||++.+..++.++|||||||++|||+||+.||..... ..
T Consensus 189 ~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~ 268 (345)
T 2v62_A 189 PDQVYLADYGLSYRYCPNGNHKQYQENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQNLKDPV 268 (345)
T ss_dssp TTSEEECCCTTCEESSGGGCCCCCCCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGGGTTCHH
T ss_pred CCcEEEEeCCCceecccccccccchhccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCccccccccH
Confidence 999999999987643211 111334699999999999999999999999999999999999999964221 11
Q ss_pred HHHHHh-ccccccccccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCC
Q 002278 827 QLIMSK-ADDNTVMEAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLP 889 (943)
Q Consensus 827 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~ 889 (943)
...... ............... .......+.+++..||+.||++|||+.++++.|+....
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~ 328 (345)
T 2v62_A 269 AVQTAKTNLLDELPQSVLKWAP----SGSSCCEIAQFLVCAHSLAYDEKPNYQALKKILNPHGI 328 (345)
T ss_dssp HHHHHHHHHHHTTTHHHHHHSC----TTSCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHCTTCC
T ss_pred HHHHHHHhhcccccHHHHhhcc----ccccHHHHHHHHHHHhhcCcccCCCHHHHHHHHhccCC
Confidence 111111 101111111100000 00112467899999999999999999999999987554
No 184
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=100.00 E-value=3e-38 Score=368.98 Aligned_cols=255 Identities=23% Similarity=0.285 Sum_probs=208.4
Q ss_pred HhhccccceEEeeeceEEEEEEEec-CCceEEEEEecccCc-------------ccHHHHHHHHHHHhcCCCCCcceeee
Q 002278 614 STENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYP-------------HNLREFETELETIGSIRHRNIVSLHG 679 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~-------------~~~~~~~~E~~~l~~l~h~niv~l~~ 679 (943)
..++|...+.||+|+||+||+|..+ +++.||+|++..... ...+.+.+|+++++.++||||+++++
T Consensus 34 i~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~ 113 (504)
T 3q5i_A 34 IGESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFD 113 (504)
T ss_dssp GGGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEE
T ss_pred cccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEE
Confidence 4578999999999999999999986 478899999865321 33567899999999999999999999
Q ss_pred EEecCCcceEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCC---c
Q 002278 680 YALSPYGNLLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENF---D 756 (943)
Q Consensus 680 ~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~---~ 756 (943)
++.+....++||||+++|+|.+++. ....+++..+..++.|++.||+|||+. +|+||||||+||+++.++ .
T Consensus 114 ~~~~~~~~~lv~e~~~gg~L~~~l~---~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~ 187 (504)
T 3q5i_A 114 VFEDKKYFYLVTEFYEGGELFEQII---NRHKFDECDAANIMKQILSGICYLHKH---NIVHRDIKPENILLENKNSLLN 187 (504)
T ss_dssp EEECSSEEEEEEECCTTCBHHHHHH---HHSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESSTTCCSS
T ss_pred EEEcCCEEEEEEecCCCCcHHHHHH---HcCCCCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCcHHHEEEecCCCCcc
Confidence 9999999999999999999999886 345699999999999999999999999 999999999999998775 6
Q ss_pred eeecccccccccCCCCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhcccc
Q 002278 757 AHLSDFGIARCIPTAMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDN 836 (943)
Q Consensus 757 ~kl~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~ 836 (943)
+||+|||+++....... .....||+.|+|||++. ..++.++||||+||++|+|++|+.||.+...............
T Consensus 188 ~kl~Dfg~a~~~~~~~~--~~~~~gt~~y~aPE~~~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~i~~~~~ 264 (504)
T 3q5i_A 188 IKIVDFGLSSFFSKDYK--LRDRLGTAYYIAPEVLK-KKYNEKCDVWSCGVIMYILLCGYPPFGGQNDQDIIKKVEKGKY 264 (504)
T ss_dssp EEECCCTTCEECCTTSC--BCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCC
T ss_pred EEEEECCCCEEcCCCCc--cccccCCcCCCCHHHhc-cCCCchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCC
Confidence 99999999987754422 23346999999999987 4689999999999999999999999988766554444333322
Q ss_pred ccccccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhh
Q 002278 837 TVMEAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVS 886 (943)
Q Consensus 837 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~ 886 (943)
......++.+ ...+.+++..|++.||++|||+.|+++|-+-
T Consensus 265 ~~~~~~~~~~---------s~~~~~li~~~L~~dp~~R~t~~e~l~h~~~ 305 (504)
T 3q5i_A 265 YFDFNDWKNI---------SDEAKELIKLMLTYDYNKRCTAEEALNSRWI 305 (504)
T ss_dssp CCCHHHHTTS---------CHHHHHHHHHHTCSSTTTSCCHHHHHTSHHH
T ss_pred CCCccccCCC---------CHHHHHHHHHHcCCChhHCCCHHHHhcCHhh
Confidence 2221111122 1467789999999999999999999997653
No 185
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.3e-38 Score=356.16 Aligned_cols=260 Identities=23% Similarity=0.370 Sum_probs=198.0
Q ss_pred hccccceEEeeeceEEEEEEEecC--C--ceEEEEEecccC-cccHHHHHHHHHHHhcCCCCCcceeeeEEec-CCcceE
Q 002278 616 ENLSEKYIVGYGASSTVYKCALKN--S--RPIAVKKLYNQY-PHNLREFETELETIGSIRHRNIVSLHGYALS-PYGNLL 689 (943)
Q Consensus 616 ~~~~~~~~lG~G~~g~Vy~~~~~~--~--~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~-~~~~~l 689 (943)
..|...+.||+|+||+||+|.+.+ + ..||+|.+.... ....+.+.+|+.++++++||||+++++++.. ++..++
T Consensus 89 ~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~l 168 (373)
T 3c1x_A 89 LIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLV 168 (373)
T ss_dssp EEEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCEE
T ss_pred ceeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeEE
Confidence 356777899999999999998652 2 358999886533 3456789999999999999999999999765 457799
Q ss_pred EEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccC
Q 002278 690 FYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIP 769 (943)
Q Consensus 690 v~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~ 769 (943)
||||+++|+|.+++.. ....+++.++..++.|++.||+|||++ +|+||||||+||++++++.+||+|||+++...
T Consensus 169 v~e~~~~g~L~~~l~~--~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~kL~DFG~a~~~~ 243 (373)
T 3c1x_A 169 VLPYMKHGDLRNFIRN--ETHNPTVKDLIGFGLQVAKGMKFLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDMY 243 (373)
T ss_dssp EEECCTTCBHHHHHHC--TTCCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCC-------
T ss_pred EEECCCCCCHHHHHhh--cccCCCHHHHHHHHHHHHHHHHHHHHC---CEecCccchheEEECCCCCEEEeecccccccc
Confidence 9999999999999974 334588999999999999999999999 99999999999999999999999999998664
Q ss_pred CCCC---ceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHh-CCCCCCCCccHHHHHHHhccccccccccCcc
Q 002278 770 TAMP---HASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILT-GKKAVDNESNLHQLIMSKADDNTVMEAVDPE 845 (943)
Q Consensus 770 ~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 845 (943)
.... .......+|+.|+|||++.+..++.++|||||||++|||+| |.+||................... .|.
T Consensus 244 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~~~~~~~~~~~~~~~~----~p~ 319 (373)
T 3c1x_A 244 DKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLL----QPE 319 (373)
T ss_dssp --------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCSSCHHHHHHTTCCCC----CCT
T ss_pred ccccccccccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCCHHHHHHHHHcCCCCC----CCC
Confidence 3321 12233457889999999999999999999999999999999 778887554433222222111110 011
Q ss_pred cccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCCCCC
Q 002278 846 VSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLPAPP 892 (943)
Q Consensus 846 ~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~~~~ 892 (943)
. ....+.+++..||+.||++|||+.+++++|+.+.....
T Consensus 320 ---~-----~~~~l~~li~~cl~~dp~~RPs~~ell~~L~~i~~~~~ 358 (373)
T 3c1x_A 320 ---Y-----CPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFI 358 (373)
T ss_dssp ---T-----CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTCC
T ss_pred ---C-----CCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhcc
Confidence 1 12467899999999999999999999999998765443
No 186
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*
Probab=100.00 E-value=1.4e-38 Score=358.67 Aligned_cols=256 Identities=23% Similarity=0.290 Sum_probs=201.8
Q ss_pred hhccccceEEeeeceEEEEEEEecCCceEEEEEecccC--cccHHHHHHHHHHHhcCC--CCCcceeeeEEecCCcceEE
Q 002278 615 TENLSEKYIVGYGASSTVYKCALKNSRPIAVKKLYNQY--PHNLREFETELETIGSIR--HRNIVSLHGYALSPYGNLLF 690 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~--h~niv~l~~~~~~~~~~~lv 690 (943)
.+.|+..+.||+|+||.||+|....++.||||++.... ....+.+.+|+++++.++ ||||+++++++..++..++|
T Consensus 55 ~~~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~lv 134 (390)
T 2zmd_A 55 GRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMV 134 (390)
T ss_dssp TEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred CCceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEEE
Confidence 35699999999999999999998889999999986543 334567899999999996 59999999999999999999
Q ss_pred EEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccCC
Q 002278 691 YDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIPT 770 (943)
Q Consensus 691 ~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~~ 770 (943)
|| +.+++|.+++. ....+++.++..++.||+.||+|||+. +|+||||||+||+++ ++.+||+|||+++.+..
T Consensus 135 ~E-~~~~~L~~~l~---~~~~~~~~~~~~i~~qi~~aL~~lH~~---~ivHrDlkp~NIll~-~~~~kl~DFG~a~~~~~ 206 (390)
T 2zmd_A 135 ME-CGNIDLNSWLK---KKKSIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIV-DGMLKLIDFGIANQMQP 206 (390)
T ss_dssp EE-CCSEEHHHHHH---HCSSCCHHHHHHHHHHHHHHHHHHHTT---TCCCCCCCGGGEEES-SSCEEECCCSSSCCC--
T ss_pred Ee-cCCCCHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHEEEE-CCeEEEEecCccccccC
Confidence 99 67889999997 344689999999999999999999999 999999999999996 57999999999987654
Q ss_pred CCCc-eeeeEecccceeCcccccc-----------CCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhcccccc
Q 002278 771 AMPH-ASTFVLGTIGYIDPEYAHT-----------SRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTV 838 (943)
Q Consensus 771 ~~~~-~~~~~~gt~~y~aPE~~~~-----------~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~ 838 (943)
.... ......||+.|+|||++.+ ..++.++|||||||++|||++|+.||..................
T Consensus 207 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~~~~~~~~~~~~~~- 285 (390)
T 2zmd_A 207 DTTSVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPNH- 285 (390)
T ss_dssp -------CCSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHHHHHHHCTTS-
T ss_pred CCccccCCCCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhhhHHHHHHHHHhCccc-
Confidence 3221 1233469999999999865 36889999999999999999999999865443222222211110
Q ss_pred ccccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcC
Q 002278 839 MEAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLL 888 (943)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~ 888 (943)
...++... ...+.+++..||+.||++|||+.|++++.+-..
T Consensus 286 ----~~~~~~~~-----~~~~~~li~~~L~~dP~~Rps~~ell~hp~~~~ 326 (390)
T 2zmd_A 286 ----EIEFPDIP-----EKDLQDVLKCCLKRDPKQRISIPELLAHPYVQI 326 (390)
T ss_dssp ----CCCCCCCS-----CHHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHS
T ss_pred ----cCCCCccc-----hHHHHHHHHHHcccChhhCCCHHHHhhCcCccc
Confidence 00111100 145778999999999999999999999876543
No 187
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=100.00 E-value=7e-39 Score=375.86 Aligned_cols=261 Identities=28% Similarity=0.396 Sum_probs=213.7
Q ss_pred HhhccccceEEeeeceEEEEEEEecCCceEEEEEecccCcccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEEEEE
Q 002278 614 STENLSEKYIVGYGASSTVYKCALKNSRPIAVKKLYNQYPHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLFYDY 693 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~ 693 (943)
..++|+..+.||+|+||.||+|.++.+..||||++.... ...+.+.+|++++++++||||+++++++.+ ...++||||
T Consensus 265 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-~~~~lv~e~ 342 (535)
T 2h8h_A 265 PRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIVTEY 342 (535)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEEECC
T ss_pred chhhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCC-CCHHHHHHHHHHHHhCCCCCEeeEEEEEee-ccceEeeeh
Confidence 457889999999999999999999888889999987543 346789999999999999999999999876 678999999
Q ss_pred ccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccCCCCC
Q 002278 694 MVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIPTAMP 773 (943)
Q Consensus 694 ~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~~~~~ 773 (943)
+++|+|.+++... ....+++.+++.++.||+.||+|||++ +|+||||||+|||+++++.+||+|||+++.......
T Consensus 343 ~~~gsL~~~l~~~-~~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~ 418 (535)
T 2h8h_A 343 MSKGSLLDFLKGE-TGKYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGLARLIEDNEY 418 (535)
T ss_dssp CTTEEHHHHHSHH-HHTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCTTSTTTCCCHHH
T ss_pred hcCCcHHHHHhhc-CCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCHhhEEEcCCCcEEEcccccceecCCCce
Confidence 9999999999631 123589999999999999999999999 999999999999999999999999999987643211
Q ss_pred ceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHh-CCCCCCCCccHHHHHHHhccccccccccCcccccCccC
Q 002278 774 HASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILT-GKKAVDNESNLHQLIMSKADDNTVMEAVDPEVSVTCVD 852 (943)
Q Consensus 774 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 852 (943)
.......++..|+|||++.+..++.++|||||||++|||+| |+.||.+............. ... ...+.
T Consensus 419 ~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~~~~~~~~i~~~-~~~--~~~~~------- 488 (535)
T 2h8h_A 419 TARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNREVLDQVERG-YRM--PCPPE------- 488 (535)
T ss_dssp HTTCSTTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCCHHHHHHHHHTT-CCC--CCCTT-------
T ss_pred ecccCCcCcccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcC-CCC--CCCCC-------
Confidence 11222346789999999999999999999999999999999 99999876554333222211 110 01111
Q ss_pred HHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCCCCC
Q 002278 853 LSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLPAPP 892 (943)
Q Consensus 853 ~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~~~~ 892 (943)
....+.+++..||+.||++|||+.++++.|+.+.....
T Consensus 489 --~~~~l~~li~~cl~~dP~~RPt~~~l~~~L~~~~~~~~ 526 (535)
T 2h8h_A 489 --CPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTE 526 (535)
T ss_dssp --CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSCCCS
T ss_pred --CCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHhhccC
Confidence 12467889999999999999999999999998776443
No 188
>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=3.2e-38 Score=341.23 Aligned_cols=259 Identities=20% Similarity=0.307 Sum_probs=209.8
Q ss_pred hhccccce-EEeeeceEEEEEEEec---CCceEEEEEecccC-cccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceE
Q 002278 615 TENLSEKY-IVGYGASSTVYKCALK---NSRPIAVKKLYNQY-PHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLL 689 (943)
Q Consensus 615 ~~~~~~~~-~lG~G~~g~Vy~~~~~---~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 689 (943)
.++|.... .||+|+||.||+|.++ .+..||+|++.... ....+.+.+|+++++.++||||+++++++ ..+..++
T Consensus 8 ~~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~-~~~~~~l 86 (287)
T 1u59_A 8 RDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVC-QAEALML 86 (287)
T ss_dssp GGGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-ESSSEEE
T ss_pred HHHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEe-cCCCcEE
Confidence 35566666 8999999999999864 56789999997643 33456789999999999999999999999 4556899
Q ss_pred EEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccC
Q 002278 690 FYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIP 769 (943)
Q Consensus 690 v~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~ 769 (943)
||||+++++|.+++.. ....+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++...
T Consensus 87 v~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~ 161 (287)
T 1u59_A 87 VMEMAGGGPLHKFLVG--KREEIPVSNVAELLHQVSMGMKYLEEK---NFVHRDLAARNVLLVNRHYAKISDFGLSKALG 161 (287)
T ss_dssp EEECCTTEEHHHHHTT--CTTTSCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEEETTEEEECCCTTCEECT
T ss_pred EEEeCCCCCHHHHHHh--CCccCCHHHHHHHHHHHHHHHHHHHHC---CEeeCCCchheEEEcCCCCEEECcccceeeec
Confidence 9999999999999863 345689999999999999999999999 99999999999999999999999999998775
Q ss_pred CCCCce--eeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHh-CCCCCCCCccHHHHHHHhccccccccccCccc
Q 002278 770 TAMPHA--STFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILT-GKKAVDNESNLHQLIMSKADDNTVMEAVDPEV 846 (943)
Q Consensus 770 ~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 846 (943)
...... .....||+.|+|||++.+..++.++|||||||++|||+| |+.||................. ...++.+
T Consensus 162 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~i~~~~~---~~~~~~~ 238 (287)
T 1u59_A 162 ADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQGKR---MECPPEC 238 (287)
T ss_dssp TCSCEECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTHHHHHHHHTTCC---CCCCTTC
T ss_pred cCcceeeccccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCHHHHHHHHhcCCc---CCCCCCc
Confidence 433221 122346889999999998899999999999999999999 9999987655433322222111 1111111
Q ss_pred ccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCCCC
Q 002278 847 SVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLPAP 891 (943)
Q Consensus 847 ~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~~~ 891 (943)
...+.+++..||+.||++||++.+++++|+.+....
T Consensus 239 ---------~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~ 274 (287)
T 1u59_A 239 ---------PPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSL 274 (287)
T ss_dssp ---------CHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred ---------CHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhc
Confidence 246789999999999999999999999999876543
No 189
>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=4.8e-38 Score=348.35 Aligned_cols=267 Identities=25% Similarity=0.360 Sum_probs=205.6
Q ss_pred HHhhccccceEEeeeceEEEEEEEecCCceEEEEEecccCcccHHHHHHHHHHHhcC--CCCCcceeeeEEecC----Cc
Q 002278 613 RSTENLSEKYIVGYGASSTVYKCALKNSRPIAVKKLYNQYPHNLREFETELETIGSI--RHRNIVSLHGYALSP----YG 686 (943)
Q Consensus 613 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l--~h~niv~l~~~~~~~----~~ 686 (943)
...++|+..+.||+|+||.||+|+++ ++.||||++... ....+.+|.+++... +||||+++++++... ..
T Consensus 34 ~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~---~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~ 109 (337)
T 3mdy_A 34 TIAKQIQMVKQIGKGRYGEVWMGKWR-GEKVAVKVFFTT---EEASWFRETEIYQTVLMRHENILGFIAADIKGTGSWTQ 109 (337)
T ss_dssp THHHHCEEEEEEEEETTEEEEEEEET-TEEEEEEEEEGG---GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGGGCE
T ss_pred ccccceEEEeEeecCCCeEEEEEEEC-CceEEEEEEecc---ccchhhhHHHHHHHHhhcCCCeeeEEEEEccCCCCCCc
Confidence 45678999999999999999999986 889999998543 334555666666655 899999999999877 67
Q ss_pred ceEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCC-----CCCeEecCCCCccEEECCCCceeecc
Q 002278 687 NLLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDC-----NPRIIHRDVKSSNILIDENFDAHLSD 761 (943)
Q Consensus 687 ~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~-----~~~ivH~Dlkp~Nill~~~~~~kl~D 761 (943)
.++||||+++|+|.++++ ...+++..++.++.|++.||+|||+.+ .++|+||||||+||+++.++.+||+|
T Consensus 110 ~~lv~e~~~~g~L~~~l~----~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kl~D 185 (337)
T 3mdy_A 110 LYLITDYHENGSLYDYLK----STTLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIAD 185 (337)
T ss_dssp EEEEECCCTTCBHHHHHH----HCCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGGEEECTTSCEEECC
T ss_pred eEEEEeccCCCcHHHHhh----ccCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccchHHEEECCCCCEEEEe
Confidence 899999999999999995 336899999999999999999999752 34899999999999999999999999
Q ss_pred cccccccCCCCCce---eeeEecccceeCccccccCCCCCc------chhhhHHHHHHHHHhC----------CCCCCCC
Q 002278 762 FGIARCIPTAMPHA---STFVLGTIGYIDPEYAHTSRLNEK------SDVYSFGIVLLEILTG----------KKAVDNE 822 (943)
Q Consensus 762 FGla~~~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~------~DvwSlGvil~elltG----------~~p~~~~ 822 (943)
||+++.+....... .....||+.|+|||++.+..++.+ +|||||||++|||+|| +.||...
T Consensus 186 fg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~~~~~~~~~~~p~~~~ 265 (337)
T 3mdy_A 186 LGLAVKFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQLPYHDL 265 (337)
T ss_dssp CTTCEECC---------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTT
T ss_pred CCCceeeccccccccCCCCCCccCcceeChhhcccccCCccccCccccchHHHHHHHHHHHhccCcccccccccccHhhh
Confidence 99998764432221 123469999999999988776665 9999999999999999 6666532
Q ss_pred c----cHHHHHHHhccccccccccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCCCCC
Q 002278 823 S----NLHQLIMSKADDNTVMEAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLPAPP 892 (943)
Q Consensus 823 ~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~~~~ 892 (943)
. ......... .. ....+..+...........+.+++..||+.||++|||+.+++++|+.+.....
T Consensus 266 ~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~~~ 334 (337)
T 3mdy_A 266 VPSDPSYEDMREIV-CI----KKLRPSFPNRWSSDECLRQMGKLMTECWAHNPASRLTALRVKKTLAKMSESQD 334 (337)
T ss_dssp SCSSCCHHHHHHHH-TT----SCCCCCCCGGGGGSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHTTT
T ss_pred cCCCCchhhhHHHH-hh----hccCccccccchhhHHHHHHHHHHHHhhhhChhhCCCHHHHHHHHHHHHhhcc
Confidence 1 111111111 11 11122222222223556788999999999999999999999999998766543
No 190
>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...
Probab=100.00 E-value=2.6e-38 Score=339.88 Aligned_cols=256 Identities=24% Similarity=0.307 Sum_probs=207.3
Q ss_pred HhhccccceEEeeeceEEEEEEEec-CCceEEEEEecccC-cccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEEE
Q 002278 614 STENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQY-PHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLFY 691 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 691 (943)
..++|+..+.||+|+||.||+|..+ +++.||+|++.... ....+.+.+|+++++.++||||+++++++.+....++||
T Consensus 5 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 84 (276)
T 2yex_A 5 FVEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFL 84 (276)
T ss_dssp HHHHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred eecceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEEE
Confidence 4578999999999999999999986 68899999986443 344578899999999999999999999999999999999
Q ss_pred EEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccCCC
Q 002278 692 DYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIPTA 771 (943)
Q Consensus 692 e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~~~ 771 (943)
||+++++|.+++. ....+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||.+......
T Consensus 85 e~~~~~~L~~~l~---~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~ 158 (276)
T 2yex_A 85 EYCSGGELFDRIE---PDIGMPEPDAQRFFHQLMAGVVYLHGI---GITHRDIKPENLLLDERDNLKISDFGLATVFRYN 158 (276)
T ss_dssp ECCTTEEGGGGSB---TTTBCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTCEECEET
T ss_pred EecCCCcHHHHHh---hccCCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCChHHEEEccCCCEEEeeCCCccccCCC
Confidence 9999999999986 345689999999999999999999999 9999999999999999999999999999865332
Q ss_pred CC-ceeeeEecccceeCccccccCCC-CCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCcccccC
Q 002278 772 MP-HASTFVLGTIGYIDPEYAHTSRL-NEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPEVSVT 849 (943)
Q Consensus 772 ~~-~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (943)
.. .......|++.|+|||++.+..+ +.++||||||+++|||++|+.||..................... ..+.+
T Consensus 159 ~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~--- 234 (276)
T 2yex_A 159 NRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEKKTYLN-PWKKI--- 234 (276)
T ss_dssp TEECCBCCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSCTTSHHHHHHHTTCTTST-TGGGS---
T ss_pred cchhcccCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCchHHHHHHHhhhcccccC-chhhc---
Confidence 11 11233468999999999987665 78999999999999999999999865432221111111111000 00111
Q ss_pred ccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 002278 850 CVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLV 885 (943)
Q Consensus 850 ~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~ 885 (943)
...+.+++..|++.||++|||+.|++++.+
T Consensus 235 ------~~~~~~li~~~l~~~p~~Rps~~~il~~~~ 264 (276)
T 2yex_A 235 ------DSAPLALLHKILVENPSARITIPDIKKDRW 264 (276)
T ss_dssp ------CHHHHHHHHHHSCSSTTTSCCHHHHTTCTT
T ss_pred ------CHHHHHHHHHHCCCCchhCCCHHHHhcCcc
Confidence 245678999999999999999999988744
No 191
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...
Probab=100.00 E-value=2.8e-38 Score=343.73 Aligned_cols=259 Identities=23% Similarity=0.370 Sum_probs=204.8
Q ss_pred hhccccceEEeeeceEEEEEEEecCC----ceEEEEEecccC-cccHHHHHHHHHHHhcCCCCCcceeeeEEe-cCCcce
Q 002278 615 TENLSEKYIVGYGASSTVYKCALKNS----RPIAVKKLYNQY-PHNLREFETELETIGSIRHRNIVSLHGYAL-SPYGNL 688 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~~~----~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~-~~~~~~ 688 (943)
..+|+..+.||+|+||+||+|.+.++ ..||+|.+.... ....+.+.+|++++++++||||+++++++. .+...+
T Consensus 24 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~ 103 (298)
T 3f66_A 24 SLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPL 103 (298)
T ss_dssp GEEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCE
T ss_pred ceehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCceE
Confidence 45688889999999999999986532 358999886543 334567889999999999999999999965 455779
Q ss_pred EEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeeccccccccc
Q 002278 689 LFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCI 768 (943)
Q Consensus 689 lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~ 768 (943)
+||||+++|+|.+++.. ....+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++..
T Consensus 104 ~v~e~~~~~~L~~~l~~--~~~~~~~~~~~~i~~ql~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~a~~~ 178 (298)
T 3f66_A 104 VVLPYMKHGDLRNFIRN--ETHNPTVKDLIGFGLQVAKGMKYLASK---KFVHRDLAARNCMLDEKFTVKVADFGLARDM 178 (298)
T ss_dssp EEEECCTTCBHHHHHHC--TTCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCCEEECSCGGGCCC
T ss_pred EEEeCCCCCCHHHHHHh--cccCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCchheEEECCCCCEEECcccccccc
Confidence 99999999999999974 345689999999999999999999999 9999999999999999999999999999876
Q ss_pred CCCCC---ceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHh-CCCCCCCCccHHHHHHHhccccccccccCc
Q 002278 769 PTAMP---HASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILT-GKKAVDNESNLHQLIMSKADDNTVMEAVDP 844 (943)
Q Consensus 769 ~~~~~---~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 844 (943)
..... .......||+.|+|||.+.+..++.++||||+|+++|||++ |.+||.................... ..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 255 (298)
T 3f66_A 179 YDKEYYSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTFDITVYLLQGRRLLQ---PE 255 (298)
T ss_dssp SCGGGCBC-----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTSCTTTHHHHHHTTCCCCC---CT
T ss_pred cccchhccccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCccCCHHHHHHHHhcCCCCCC---Cc
Confidence 43321 12233457889999999999999999999999999999999 6667765544333322222211111 11
Q ss_pred ccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCCC
Q 002278 845 EVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLPA 890 (943)
Q Consensus 845 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~~ 890 (943)
.. ...+.+++..||+.||++|||+.++++.|+.+...
T Consensus 256 ~~---------~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~~ 292 (298)
T 3f66_A 256 YC---------PDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFST 292 (298)
T ss_dssp TC---------CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred cC---------CHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHh
Confidence 11 14678899999999999999999999999887654
No 192
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*
Probab=100.00 E-value=5.1e-38 Score=342.52 Aligned_cols=253 Identities=23% Similarity=0.371 Sum_probs=211.7
Q ss_pred HhhccccceEEeeeceEEEEEEEec-CCceEEEEEecccC-cccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEEE
Q 002278 614 STENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQY-PHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLFY 691 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 691 (943)
..+.|+..+.||+|+||.||+|... +++.||+|.+.... ....+.+.+|+.+++.++||||+++++++.+....++||
T Consensus 20 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 99 (303)
T 3a7i_A 20 PEELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIM 99 (303)
T ss_dssp GGGTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred hHHHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEE
Confidence 3467899999999999999999975 57899999986543 445678999999999999999999999999999999999
Q ss_pred EEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccCCC
Q 002278 692 DYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIPTA 771 (943)
Q Consensus 692 e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~~~ 771 (943)
||+++++|.+++. ...+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||++......
T Consensus 100 e~~~~~~L~~~~~----~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~ 172 (303)
T 3a7i_A 100 EYLGGGSALDLLE----PGPLDETQIATILREILKGLDYLHSE---KKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDT 172 (303)
T ss_dssp ECCTTEEHHHHHT----TSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTTCEECBTT
T ss_pred EeCCCCcHHHHHh----cCCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCChheEEECCCCCEEEeecccceecCcc
Confidence 9999999999985 34689999999999999999999999 9999999999999999999999999999876543
Q ss_pred CCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCcccccCcc
Q 002278 772 MPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPEVSVTCV 851 (943)
Q Consensus 772 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 851 (943)
... .....|++.|+|||++.+..++.++||||||+++|||++|+.||................. +.+....
T Consensus 173 ~~~-~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~-------~~~~~~~- 243 (303)
T 3a7i_A 173 QIK-RNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELHPMKVLFLIPKNNP-------PTLEGNY- 243 (303)
T ss_dssp BCC-BCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCC-------CCCCSSC-
T ss_pred ccc-cCccCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCcCHHHHHHHhhcCCC-------CCCcccc-
Confidence 222 2334689999999999999999999999999999999999999987655443332222111 1111111
Q ss_pred CHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhh
Q 002278 852 DLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVS 886 (943)
Q Consensus 852 ~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~ 886 (943)
...+.+++..||+.||++|||+.+++++.+-
T Consensus 244 ----~~~l~~li~~~l~~dp~~Rps~~~ll~~~~~ 274 (303)
T 3a7i_A 244 ----SKPLKEFVEACLNKEPSFRPTAKELLKHKFI 274 (303)
T ss_dssp ----CHHHHHHHHHHCCSSGGGSCCHHHHTTCHHH
T ss_pred ----CHHHHHHHHHHcCCChhhCcCHHHHhhChhh
Confidence 1457789999999999999999999998664
No 193
>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=1e-38 Score=352.32 Aligned_cols=245 Identities=21% Similarity=0.286 Sum_probs=204.4
Q ss_pred HhhccccceEEeeeceEEEEEEEec-CCceEEEEEecccCc--------ccHHHHHHHHHHHhcCCCCCcceeeeEEecC
Q 002278 614 STENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYP--------HNLREFETELETIGSIRHRNIVSLHGYALSP 684 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~--------~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~ 684 (943)
..++|+..+.||+|+||+||+|.++ +++.||||++..... .....+.+|+++++.++||||+++++++.+.
T Consensus 22 ~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~ 101 (335)
T 3dls_A 22 YSQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQ 101 (335)
T ss_dssp HHHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEECS
T ss_pred cccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEeeC
Confidence 4678999999999999999999975 578899999865431 1234577899999999999999999999999
Q ss_pred CcceEEEEEccCC-ChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccc
Q 002278 685 YGNLLFYDYMVNG-SLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFG 763 (943)
Q Consensus 685 ~~~~lv~e~~~~g-~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFG 763 (943)
+..++||||+.+| +|.+++. ....+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||
T Consensus 102 ~~~~lv~e~~~~g~~l~~~~~---~~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~Dfg 175 (335)
T 3dls_A 102 GFFQLVMEKHGSGLDLFAFID---RHPRLDEPLASYIFRQLVSAVGYLRLK---DIIHRDIKDENIVIAEDFTIKLIDFG 175 (335)
T ss_dssp SEEEEEEECCTTSCBHHHHHH---TCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCT
T ss_pred CEEEEEEEeCCCCccHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHhC---CeEEeccCHHHEEEcCCCcEEEeecc
Confidence 9999999999777 9999987 345699999999999999999999999 99999999999999999999999999
Q ss_pred cccccCCCCCceeeeEecccceeCccccccCCC-CCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhcccccccccc
Q 002278 764 IARCIPTAMPHASTFVLGTIGYIDPEYAHTSRL-NEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAV 842 (943)
Q Consensus 764 la~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~ 842 (943)
+++....... .....||+.|+|||++.+..+ +.++|||||||++|||++|+.||....... . ...
T Consensus 176 ~a~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~------~------~~~ 241 (335)
T 3dls_A 176 SAAYLERGKL--FYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCELEETV------E------AAI 241 (335)
T ss_dssp TCEECCTTCC--BCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSSGGGGT------T------TCC
T ss_pred cceECCCCCc--eeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhhHHHHH------h------hcc
Confidence 9987754432 234569999999999988776 789999999999999999999997532210 0 000
Q ss_pred CcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 002278 843 DPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLV 885 (943)
Q Consensus 843 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~ 885 (943)
.+... ....+.+++..||+.||++|||+.+++++-+
T Consensus 242 ~~~~~-------~~~~l~~li~~~L~~dP~~Rps~~ell~hp~ 277 (335)
T 3dls_A 242 HPPYL-------VSKELMSLVSGLLQPVPERRTTLEKLVTDPW 277 (335)
T ss_dssp CCSSC-------CCHHHHHHHHHHTCSSGGGSCCHHHHHHCTT
T ss_pred CCCcc-------cCHHHHHHHHHHccCChhhCcCHHHHhcCcc
Confidence 00000 1246779999999999999999999999865
No 194
>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*
Probab=100.00 E-value=2.6e-38 Score=339.93 Aligned_cols=250 Identities=20% Similarity=0.314 Sum_probs=200.7
Q ss_pred hhccccceEEeeeceEEEEEEEec-CCceEEEEEecccC---cccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEE
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQY---PHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLF 690 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 690 (943)
.++|...+.||+|+||.||+|.++ +++.||+|++.... ....+.+.+|+++++.++||||+++++++...+..++|
T Consensus 10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv 89 (276)
T 2h6d_A 10 IGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPTDFFMV 89 (276)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred eccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCeEEEE
Confidence 467899999999999999999986 68899999986432 33456889999999999999999999999999999999
Q ss_pred EEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccCC
Q 002278 691 YDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIPT 770 (943)
Q Consensus 691 ~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~~ 770 (943)
|||+++++|.+++. ....+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||++.....
T Consensus 90 ~e~~~~~~L~~~l~---~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~ 163 (276)
T 2h6d_A 90 MEYVSGGELFDYIC---KHGRVEEMEARRLFQQILSAVDYCHRH---MVVHRDLKPENVLLDAHMNAKIADFGLSNMMSD 163 (276)
T ss_dssp EECCCSCBHHHHHH---HHCSCCHHHHHHHHHHHHHHHHHHHHH---CSSCCCCCGGGEEECTTSCEEECCCCGGGCCCC
T ss_pred EeccCCCcHHHHHh---ccCCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCChhhEEECCCCCEEEeecccccccCC
Confidence 99999999999986 345689999999999999999999999 999999999999999999999999999987654
Q ss_pred CCCceeeeEecccceeCccccccCCC-CCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCcccccC
Q 002278 771 AMPHASTFVLGTIGYIDPEYAHTSRL-NEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPEVSVT 849 (943)
Q Consensus 771 ~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (943)
... .....|++.|+|||++.+..+ +.++||||||+++|+|++|+.||...................+. .+
T Consensus 164 ~~~--~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~----~~--- 234 (276)
T 2h6d_A 164 GEF--LRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEHVPTLFKKIRGGVFYIPE----YL--- 234 (276)
T ss_dssp ---------------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCT----TS---
T ss_pred Ccc--eecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCCcHHHHHHHhhcCcccCch----hc---
Confidence 321 223458999999999988765 68999999999999999999999876543332222221111111 11
Q ss_pred ccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 002278 850 CVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLV 885 (943)
Q Consensus 850 ~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~ 885 (943)
...+.+++..|++.||++|||+.+++++-+
T Consensus 235 ------~~~l~~li~~~l~~~p~~Rps~~~~l~h~~ 264 (276)
T 2h6d_A 235 ------NRSVATLLMHMLQVDPLKRATIKDIREHEW 264 (276)
T ss_dssp ------CHHHHHHHHHHTCSSGGGSCCHHHHHHSHH
T ss_pred ------CHHHHHHHHHHccCChhhCCCHHHHHhChh
Confidence 145778999999999999999999999755
No 195
>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*
Probab=100.00 E-value=1.4e-38 Score=354.55 Aligned_cols=267 Identities=21% Similarity=0.272 Sum_probs=210.3
Q ss_pred hhccccceEEeeeceEEEEEEEec-CCceEEEEEecccC--cccHHHHHHHHHHHhcCCCCCcceeeeEEecC-------
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQY--PHNLREFETELETIGSIRHRNIVSLHGYALSP------- 684 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~------- 684 (943)
.++|+..+.||+|+||+||+|+++ +++.||+|++.... ......+.+|+++++.++||||+++++++...
T Consensus 16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 95 (351)
T 3mi9_A 16 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC 95 (351)
T ss_dssp GGGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC-------
T ss_pred ccceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccC
Confidence 478999999999999999999985 68899999985443 23345788999999999999999999999774
Q ss_pred -CcceEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccc
Q 002278 685 -YGNLLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFG 763 (943)
Q Consensus 685 -~~~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFG 763 (943)
+..++||||+++ ++.+.+.. ....+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||
T Consensus 96 ~~~~~lv~e~~~~-~l~~~l~~--~~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg 169 (351)
T 3mi9_A 96 KGSIYLVFDFCEH-DLAGLLSN--VLVKFTLSEIKRVMQMLLNGLYYIHRN---KILHRDMKAANVLITRDGVLKLADFG 169 (351)
T ss_dssp -CEEEEEEECCSE-EHHHHHHC--TTSCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCT
T ss_pred CceEEEEEeccCC-CHHHHHhh--ccCCCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCHHHEEEcCCCCEEEccch
Confidence 457899999975 77777653 234699999999999999999999999 99999999999999999999999999
Q ss_pred cccccCCCC---CceeeeEecccceeCcccccc-CCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccc
Q 002278 764 IARCIPTAM---PHASTFVLGTIGYIDPEYAHT-SRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVM 839 (943)
Q Consensus 764 la~~~~~~~---~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~ 839 (943)
+++.+.... ........||+.|+|||++.+ ..++.++|||||||++|||+||+.||.+..............+...
T Consensus 170 ~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~ 249 (351)
T 3mi9_A 170 LARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSIT 249 (351)
T ss_dssp TCEECCCCSSSSCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCC
T ss_pred hcccccccccccccccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCC
Confidence 998764321 122233468999999998876 4589999999999999999999999998776655554444333333
Q ss_pred cccCcccccC------------ccCH-H------HHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhc
Q 002278 840 EAVDPEVSVT------------CVDL-S------AVRKTFQLALLCTKRYPSERPTMQEVARVLVSL 887 (943)
Q Consensus 840 ~~~~~~~~~~------------~~~~-~------~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~ 887 (943)
....+..... .... . ....+.+++.+|++.||++|||+.|+++|-+-.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~ 316 (351)
T 3mi9_A 250 PEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNHDFFW 316 (351)
T ss_dssp TTTSTTGGGCGGGTSSCCCSSCCCCHHHHHHHHHCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGG
T ss_pred hhhccccccchhhcccccccccccCHHHHhhhccCChHHHHHHHHHhcCChhhCCCHHHHhCCCCcC
Confidence 3222222100 0000 0 123577899999999999999999999987643
No 196
>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.8e-38 Score=354.96 Aligned_cols=257 Identities=24% Similarity=0.275 Sum_probs=202.2
Q ss_pred hhccccceEEeeeceEEEEEEEec-CCceEEEEEecccCc--ccHHHHHHHHHHHhcCCCCCcceeeeEEecCC------
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYP--HNLREFETELETIGSIRHRNIVSLHGYALSPY------ 685 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~------ 685 (943)
.++|+..+.||+|+||.||+|.++ +++.||||++..... ...+.+.+|+++++.++||||+++++++....
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~ 103 (367)
T 1cm8_A 24 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT 103 (367)
T ss_dssp BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred cceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccCc
Confidence 467999999999999999999975 688999999865432 23467889999999999999999999998763
Q ss_pred cceEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccc
Q 002278 686 GNLLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIA 765 (943)
Q Consensus 686 ~~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla 765 (943)
..++||||+ +++|.+++.. ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||++
T Consensus 104 ~~~lv~e~~-~~~L~~~~~~----~~l~~~~~~~~~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Dfg~a 175 (367)
T 1cm8_A 104 DFYLVMPFM-GTDLGKLMKH----EKLGEDRIQFLVYQMLKGLRYIHAA---GIIHRDLKPGNLAVNEDCELKILDFGLA 175 (367)
T ss_dssp CCEEEEECC-SEEHHHHHHH----CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTC
T ss_pred eEEEEEecC-CCCHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHC---CccccCcCHHHEEEcCCCCEEEEeeecc
Confidence 359999999 8899999862 4689999999999999999999999 9999999999999999999999999999
Q ss_pred cccCCCCCceeeeEecccceeCcccccc-CCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccC-
Q 002278 766 RCIPTAMPHASTFVLGTIGYIDPEYAHT-SRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVD- 843 (943)
Q Consensus 766 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~- 843 (943)
+..... .....||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+.+....+..+....+.......
T Consensus 176 ~~~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~~~~~~~~ 251 (367)
T 1cm8_A 176 RQADSE----MTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQ 251 (367)
T ss_dssp EECCSS----CCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHH
T ss_pred cccccc----cCcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhcCCCCHHHHH
Confidence 876432 223468999999999887 67999999999999999999999999987766655544332222111110
Q ss_pred -------------------cccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 002278 844 -------------------PEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLV 885 (943)
Q Consensus 844 -------------------~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~ 885 (943)
..+.... ......+.+++.+|++.||++|||+.++++|-+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ll~~mL~~dP~~R~t~~e~l~hp~ 310 (367)
T 1cm8_A 252 RLQSDEAKNYMKGLPELEKKDFASIL--TNASPLAVNLLEKMLVLDAEQRVTAGEALAHPY 310 (367)
T ss_dssp TCSCHHHHHHHHHSCCCCCCCGGGTC--TTCCHHHHHHHHHHSCSSTTTSCCHHHHHHSGG
T ss_pred HhhhHHHHHHHHhCCCCCCCCHHHHC--CCCCHHHHHHHHHHccCChhHCCCHHHHhcChH
Confidence 0000000 011246779999999999999999999999855
No 197
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=100.00 E-value=2e-38 Score=367.84 Aligned_cols=254 Identities=19% Similarity=0.259 Sum_probs=208.1
Q ss_pred hhccccceEEeeeceEEEEEEEec-CCceEEEEEecccC---cccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEE
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQY---PHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLF 690 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 690 (943)
.++|...+.||+|+||.||+|+.+ +++.||+|++.+.. ......+.+|+++++.++||||+++++++.+....++|
T Consensus 184 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~lV 263 (543)
T 3c4z_A 184 EDWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLCLV 263 (543)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred hhheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEEEE
Confidence 467889999999999999999986 58999999986432 23456788999999999999999999999999999999
Q ss_pred EEEccCCChhhhccCCC-CCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccC
Q 002278 691 YDYMVNGSLWDLLHGPS-KKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIP 769 (943)
Q Consensus 691 ~e~~~~g~L~~~l~~~~-~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~ 769 (943)
|||++||+|.+++.... ....+++..+..++.||+.||+|||++ +|+||||||+||+++.+|++||+|||+++...
T Consensus 264 mE~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH~~---gIvHrDLKP~NILl~~~g~vkL~DFGla~~~~ 340 (543)
T 3c4z_A 264 MTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQR---NIIYRDLKPENVLLDDDGNVRISDLGLAVELK 340 (543)
T ss_dssp ECCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCTTCEECC
T ss_pred EEeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHc---CCcccCCChHHEEEeCCCCEEEeecceeeecc
Confidence 99999999999986432 234699999999999999999999999 99999999999999999999999999998775
Q ss_pred CCCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCcc---HHHHHHHh-ccccccccccCcc
Q 002278 770 TAMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESN---LHQLIMSK-ADDNTVMEAVDPE 845 (943)
Q Consensus 770 ~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~---~~~~~~~~-~~~~~~~~~~~~~ 845 (943)
..... ....+||+.|+|||++.+..++.++|||||||++|||+||+.||..... ...+.... ......+ +.
T Consensus 341 ~~~~~-~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~~~~~~~~~~~~~i~~~~~~~p----~~ 415 (543)
T 3c4z_A 341 AGQTK-TKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEKVENKELKQRVLEQAVTYP----DK 415 (543)
T ss_dssp TTCCC-BCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCTTCCCCHHHHHHHHHHCCCCCC----TT
T ss_pred CCCcc-cccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCCccchhHHHHHHHHhhcccCCC----cc
Confidence 44322 2334699999999999999999999999999999999999999986432 22222221 1111111 11
Q ss_pred cccCccCHHHHHHHHHHHHHccCCCCCCCCCH-----HHHHHHHh
Q 002278 846 VSVTCVDLSAVRKTFQLALLCTKRYPSERPTM-----QEVARVLV 885 (943)
Q Consensus 846 ~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~-----~el~~~L~ 885 (943)
+ ...+.+++..||+.||++||++ .++.+|-+
T Consensus 416 ~---------s~~~~~li~~lL~~dP~~R~~~~~~~a~ei~~Hpf 451 (543)
T 3c4z_A 416 F---------SPASKDFCEALLQKDPEKRLGFRDGSCDGLRTHPL 451 (543)
T ss_dssp S---------CHHHHHHHHHHSCSSGGGSCCCBTTBSHHHHTSGG
T ss_pred c---------CHHHHHHHHHhccCCHhHCCCCcccCHHHHHcCcc
Confidence 1 1456789999999999999964 78877643
No 198
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.9e-39 Score=361.40 Aligned_cols=254 Identities=22% Similarity=0.276 Sum_probs=204.1
Q ss_pred hhccccceEEeeeceEEEEEEEec----CCceEEEEEecccC----cccHHHHHHHHHHHhcC-CCCCcceeeeEEecCC
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK----NSRPIAVKKLYNQY----PHNLREFETELETIGSI-RHRNIVSLHGYALSPY 685 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~----~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~ 685 (943)
.++|+..+.||+|+||.||+|+.. +++.||||++.... ....+.+.+|+++++.+ +||||+++++++....
T Consensus 53 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~ 132 (355)
T 1vzo_A 53 IENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTET 132 (355)
T ss_dssp GGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETT
T ss_pred ccceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCc
Confidence 468999999999999999999973 68899999986432 23345677899999999 6999999999999999
Q ss_pred cceEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccc
Q 002278 686 GNLLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIA 765 (943)
Q Consensus 686 ~~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla 765 (943)
..++||||+++|+|.+++. ....+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||++
T Consensus 133 ~~~lv~e~~~~~~L~~~l~---~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~DfG~a 206 (355)
T 1vzo_A 133 KLHLILDYINGGELFTHLS---QRERFTEHEVQIYVGEIVLALEHLHKL---GIIYRDIKLENILLDSNGHVVLTDFGLS 206 (355)
T ss_dssp EEEEEECCCCSCBHHHHHH---HHSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEESCSSEE
T ss_pred eEEEEeecCCCCCHHHHHH---HcCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCcEEEeeCCCC
Confidence 9999999999999999996 345689999999999999999999999 9999999999999999999999999999
Q ss_pred cccCCCCCceeeeEecccceeCcccccc--CCCCCcchhhhHHHHHHHHHhCCCCCCCCc---cHHHHHHHhcccccccc
Q 002278 766 RCIPTAMPHASTFVLGTIGYIDPEYAHT--SRLNEKSDVYSFGIVLLEILTGKKAVDNES---NLHQLIMSKADDNTVME 840 (943)
Q Consensus 766 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~DvwSlGvil~elltG~~p~~~~~---~~~~~~~~~~~~~~~~~ 840 (943)
+.+............||+.|+|||++.+ ..++.++|||||||++|||++|+.||.... ....+........ .
T Consensus 207 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~~---~ 283 (355)
T 1vzo_A 207 KEFVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEKNSQAEISRRILKSE---P 283 (355)
T ss_dssp EECCGGGGGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCCHHHHHHHHHHCC---C
T ss_pred eecccCCCCcccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCccCCccchHHHHHHHHhccC---C
Confidence 8764333333334569999999999986 347899999999999999999999997432 2222222111111 0
Q ss_pred ccCcccccCccCHHHHHHHHHHHHHccCCCCCCCC-----CHHHHHHHHhh
Q 002278 841 AVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERP-----TMQEVARVLVS 886 (943)
Q Consensus 841 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RP-----t~~el~~~L~~ 886 (943)
...+.+ ...+.+++.+||..||++|| ++.+++++.+-
T Consensus 284 ~~~~~~---------~~~~~~li~~~L~~dP~~R~~~~~~s~~ell~h~~f 325 (355)
T 1vzo_A 284 PYPQEM---------SALAKDLIQRLLMKDPKKRLGCGPRDADEIKEHLFF 325 (355)
T ss_dssp CCCTTS---------CHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTSGGG
T ss_pred CCCccc---------CHHHHHHHHHHhhhCHHHhcCCCCCCHHHHHcCcch
Confidence 111111 14567899999999999999 99999998764
No 199
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A
Probab=100.00 E-value=6.2e-38 Score=339.51 Aligned_cols=250 Identities=23% Similarity=0.326 Sum_probs=204.0
Q ss_pred hccccceEEeeeceEEEEEEEec-CCceEEEEEecccC--cccHHHHHHHHHHHhcCCCCCcceeeeEEec----CCcce
Q 002278 616 ENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQY--PHNLREFETELETIGSIRHRNIVSLHGYALS----PYGNL 688 (943)
Q Consensus 616 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~----~~~~~ 688 (943)
..|...+.||+|+||+||+|.+. ++..||+|++.... ....+.+.+|+++++.++||||+++++++.. ....+
T Consensus 26 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 105 (290)
T 1t4h_A 26 RFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIV 105 (290)
T ss_dssp CEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEE
T ss_pred eeEEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceEE
Confidence 45778889999999999999976 56789999886542 3345678899999999999999999999865 34578
Q ss_pred EEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCC--eEecCCCCccEEEC-CCCceeecccccc
Q 002278 689 LFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPR--IIHRDVKSSNILID-ENFDAHLSDFGIA 765 (943)
Q Consensus 689 lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~Dlkp~Nill~-~~~~~kl~DFGla 765 (943)
+||||+++|+|.+++. ....+++..+..++.|++.||+|||+. + |+||||||+||+++ .++.+||+|||++
T Consensus 106 lv~e~~~~~~L~~~l~---~~~~~~~~~~~~~~~qi~~~l~~lH~~---~~~i~H~dikp~Nil~~~~~~~~kl~Dfg~~ 179 (290)
T 1t4h_A 106 LVTELMTSGTLKTYLK---RFKVMKIKVLRSWCRQILKGLQFLHTR---TPPIIHRDLKCDNIFITGPTGSVKIGDLGLA 179 (290)
T ss_dssp EEEECCCSCBHHHHHH---HHSSCCHHHHHHHHHHHHHHHHHHHTS---SSCCCCSCCCGGGEEESSTTSCEEECCTTGG
T ss_pred EEEEecCCCCHHHHHH---HccCCCHHHHHHHHHHHHHHHHHHHcC---CCCEEECCCCHHHEEEECCCCCEEEeeCCCc
Confidence 9999999999999996 345689999999999999999999998 7 99999999999998 7899999999999
Q ss_pred cccCCCCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCcc
Q 002278 766 RCIPTAMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPE 845 (943)
Q Consensus 766 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 845 (943)
...... ......||+.|+|||++.+ .++.++||||+||++|+|++|+.||................... ...+..
T Consensus 180 ~~~~~~---~~~~~~~t~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~-~~~~~~ 254 (290)
T 1t4h_A 180 TLKRAS---FAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQNAAQIYRRVTSGVKP-ASFDKV 254 (290)
T ss_dssp GGCCTT---SBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSSHHHHHHHHTTTCCC-GGGGGC
T ss_pred cccccc---ccccccCCcCcCCHHHHhc-cCCCcchHHHHHHHHHHHHhCCCCCCCcCcHHHHHHHHhccCCc-cccCCC
Confidence 765433 2233469999999998874 58999999999999999999999998766655554443332211 111111
Q ss_pred cccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 002278 846 VSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLV 885 (943)
Q Consensus 846 ~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~ 885 (943)
. ...+.+++..||+.||++|||+.++++|-+
T Consensus 255 ~---------~~~l~~li~~~l~~dp~~Rps~~ell~h~~ 285 (290)
T 1t4h_A 255 A---------IPEVKEIIEGCIRQNKDERYSIKDLLNHAF 285 (290)
T ss_dssp C---------CHHHHHHHHHHSCSSGGGSCCHHHHHTSGG
T ss_pred C---------CHHHHHHHHHHccCChhhCCCHHHHhhCcc
Confidence 1 145779999999999999999999998754
No 200
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=100.00 E-value=2.1e-38 Score=360.79 Aligned_cols=254 Identities=21% Similarity=0.292 Sum_probs=194.7
Q ss_pred HhhccccceEEeeeceEEEEEEEec-CCceEEEEEecccC--------cccHHHHHHHHHHHhcCCCCCcceeeeEEecC
Q 002278 614 STENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQY--------PHNLREFETELETIGSIRHRNIVSLHGYALSP 684 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--------~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~ 684 (943)
..++|...+.||+|+||+||+|.++ +++.||+|++.... ......+.+|++++++++||||+++++++..
T Consensus 133 ~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~- 211 (419)
T 3i6u_A 133 LRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDA- 211 (419)
T ss_dssp HHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEES-
T ss_pred hhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEec-
Confidence 4678999999999999999999976 47899999986432 1122357899999999999999999999865
Q ss_pred CcceEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCC---Cceeecc
Q 002278 685 YGNLLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDEN---FDAHLSD 761 (943)
Q Consensus 685 ~~~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~---~~~kl~D 761 (943)
...++||||+++|+|.+++. ....+++.++..++.|++.||+|||++ +|+||||||+||+++.+ +.+||+|
T Consensus 212 ~~~~lv~e~~~~g~L~~~l~---~~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivHrDlkp~NIll~~~~~~~~~kl~D 285 (419)
T 3i6u_A 212 EDYYIVLELMEGGELFDKVV---GNKRLKEATCKLYFYQMLLAVQYLHEN---GIIHRDLKPENVLLSSQEEDCLIKITD 285 (419)
T ss_dssp SEEEEEEECCTTCBGGGGTS---SSCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESSSSSSCCEEECC
T ss_pred CceEEEEEcCCCCcHHHHHh---ccCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEecCCCcceEEEee
Confidence 45799999999999999886 345799999999999999999999999 99999999999999754 4599999
Q ss_pred cccccccCCCCCceeeeEecccceeCcccccc---CCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHh-ccccc
Q 002278 762 FGIARCIPTAMPHASTFVLGTIGYIDPEYAHT---SRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSK-ADDNT 837 (943)
Q Consensus 762 FGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~-~~~~~ 837 (943)
||+++..... .......||+.|+|||++.+ ..++.++|||||||++|||+||+.||............. .....
T Consensus 286 FG~a~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~~~~~~~~~~i~~~~~~ 363 (419)
T 3i6u_A 286 FGHSKILGET--SLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITSGKYN 363 (419)
T ss_dssp SSTTTSCC-------------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCCCSSSCCHHHHHHTTCCC
T ss_pred cccceecCCC--ccccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCcchHHHHHHHhcCCCC
Confidence 9999876543 22234569999999999864 568889999999999999999999997543321111111 11111
Q ss_pred cccccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 002278 838 VMEAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLV 885 (943)
Q Consensus 838 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~ 885 (943)
......+.+ ...+.+++.+||+.||++|||+.|+++|-+
T Consensus 364 ~~~~~~~~~---------~~~~~~li~~~L~~dP~~Rps~~e~l~hp~ 402 (419)
T 3i6u_A 364 FIPEVWAEV---------SEKALDLVKKLLVVDPKARFTTEEALRHPW 402 (419)
T ss_dssp CCHHHHTTS---------CHHHHHHHHHHSCSSTTTSCCHHHHHHSGG
T ss_pred CCchhhccc---------CHHHHHHHHHHccCChhHCcCHHHHhCCcc
Confidence 111111111 246778999999999999999999999855
No 201
>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...
Probab=100.00 E-value=2.1e-38 Score=355.47 Aligned_cols=261 Identities=22% Similarity=0.256 Sum_probs=200.4
Q ss_pred hhccccceEEeeeceEEEEEEEec-CCceEEEEEecccC--cccHHHHHHHHHHHhcCCCCCcceeeeEEecCC------
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQY--PHNLREFETELETIGSIRHRNIVSLHGYALSPY------ 685 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~------ 685 (943)
.++|+..+.||+|+||.||+|.+. +++.||||++.... ....+.+.+|+.+++.++||||+++++++....
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~ 103 (371)
T 2xrw_A 24 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQ 103 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCC
T ss_pred hhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeecccccccccc
Confidence 468999999999999999999976 57889999986543 234467889999999999999999999997765
Q ss_pred cceEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccc
Q 002278 686 GNLLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIA 765 (943)
Q Consensus 686 ~~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla 765 (943)
..++||||++ |+|.+.+. ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||++
T Consensus 104 ~~~lv~e~~~-~~l~~~~~-----~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a 174 (371)
T 2xrw_A 104 DVYIVMELMD-ANLCQVIQ-----MELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDFGLA 174 (371)
T ss_dssp EEEEEEECCS-EEHHHHHH-----SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECCCCC-
T ss_pred ceEEEEEcCC-CCHHHHHh-----hccCHHHHHHHHHHHHHHHHHHHHC---CeecccCCHHHEEEcCCCCEEEEEeecc
Confidence 5799999996 47888775 2488999999999999999999999 9999999999999999999999999999
Q ss_pred cccCCCCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhcccccccccc---
Q 002278 766 RCIPTAMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAV--- 842 (943)
Q Consensus 766 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~--- 842 (943)
+...... ......||+.|+|||++.+..++.++||||+||++|||++|+.||.+.+....+.......+......
T Consensus 175 ~~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~~ 252 (371)
T 2xrw_A 175 RTAGTSF--MMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHIDQWNKVIEQLGTPCPEFMKK 252 (371)
T ss_dssp -----------------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHC-CCCCCHHHHTT
T ss_pred ccccccc--ccCCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHH
Confidence 8664332 22345699999999999999999999999999999999999999998877666555443322111100
Q ss_pred -----------C------------cccccCcc---CHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhh
Q 002278 843 -----------D------------PEVSVTCV---DLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVS 886 (943)
Q Consensus 843 -----------~------------~~~~~~~~---~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~ 886 (943)
. +....... .......+.+++.+|+..||++|||+.|+++|-+-
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~hp~~ 322 (371)
T 2xrw_A 253 LQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQHPYI 322 (371)
T ss_dssp SCHHHHHHHHSSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSGGGSCCHHHHHHSHHH
T ss_pred hhhHHHHHHhhCccccccchhhhcccccCcccccccccccHHHHHHHHHHCcCChhhCCCHHHHhCCcch
Confidence 0 00000000 01224578899999999999999999999998764
No 202
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Probab=100.00 E-value=3.6e-38 Score=342.32 Aligned_cols=256 Identities=23% Similarity=0.339 Sum_probs=203.3
Q ss_pred hccccceEEeeeceEEEEEEEec-CCceEEEEEecccCcccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEEEEEc
Q 002278 616 ENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYPHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLFYDYM 694 (943)
Q Consensus 616 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~ 694 (943)
++|....+||+|+||.||+|.+. +++.||+|++........+.+.+|+.+++.++||||+++++++.+.+..++||||+
T Consensus 22 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~ 101 (295)
T 2clq_A 22 DENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQV 101 (295)
T ss_dssp CTTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred cCCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEEEeC
Confidence 34566679999999999999975 57889999997766666788999999999999999999999999999999999999
Q ss_pred cCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECC-CCceeecccccccccCCCCC
Q 002278 695 VNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDE-NFDAHLSDFGIARCIPTAMP 773 (943)
Q Consensus 695 ~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~-~~~~kl~DFGla~~~~~~~~ 773 (943)
++++|.+++........+++..+..++.|++.||+|||+. +|+||||||+||+++. ++.+||+|||+++.......
T Consensus 102 ~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~~~~ 178 (295)
T 2clq_A 102 PGGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDN---QIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGINP 178 (295)
T ss_dssp SEEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTCCEEECCTTTCEESCC---
T ss_pred CCCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHhC---CEEccCCChhhEEEECCCCCEEEeecccccccCCCCC
Confidence 9999999997543444678999999999999999999999 9999999999999987 89999999999987654322
Q ss_pred ceeeeEecccceeCccccccCC--CCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCcccccCcc
Q 002278 774 HASTFVLGTIGYIDPEYAHTSR--LNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPEVSVTCV 851 (943)
Q Consensus 774 ~~~~~~~gt~~y~aPE~~~~~~--~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 851 (943)
. .....|++.|+|||++.+.. ++.++||||||+++|||++|+.||................ ...+.++..
T Consensus 179 ~-~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~-----~~~~~~~~~-- 250 (295)
T 2clq_A 179 C-TETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQAAMFKVGMF-----KVHPEIPES-- 250 (295)
T ss_dssp ---CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGGSSHHHHHHHHHHH-----CCCCCCCTT--
T ss_pred c-ccccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCCCchhHHHHhhccc-----ccccccccc--
Confidence 1 22345899999999987653 8899999999999999999999997544332211111000 111111111
Q ss_pred CHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 002278 852 DLSAVRKTFQLALLCTKRYPSERPTMQEVARVLV 885 (943)
Q Consensus 852 ~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~ 885 (943)
....+.+++..||+.||++||++.+++++-+
T Consensus 251 ---~~~~~~~li~~~l~~dp~~Rps~~~ll~~~~ 281 (295)
T 2clq_A 251 ---MSAEAKAFILKCFEPDPDKRACANDLLVDEF 281 (295)
T ss_dssp ---SCHHHHHHHHHTTCSSTTTSCCHHHHHTSGG
T ss_pred ---CCHHHHHHHHHHccCChhhCCCHHHHhcChh
Confidence 1246778999999999999999999998754
No 203
>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*
Probab=100.00 E-value=3.1e-38 Score=342.08 Aligned_cols=258 Identities=22% Similarity=0.311 Sum_probs=207.1
Q ss_pred Hhhccccce-EEeeeceEEEEEEEec---CCceEEEEEecccC--cccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcc
Q 002278 614 STENLSEKY-IVGYGASSTVYKCALK---NSRPIAVKKLYNQY--PHNLREFETELETIGSIRHRNIVSLHGYALSPYGN 687 (943)
Q Consensus 614 ~~~~~~~~~-~lG~G~~g~Vy~~~~~---~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 687 (943)
..++|.... .||+|+||+||+|.+. .++.||||++.... ....+.+.+|+++++.++||||+++++++ ..+..
T Consensus 14 ~~~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-~~~~~ 92 (291)
T 1xbb_A 14 DRKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGIC-EAESW 92 (291)
T ss_dssp CGGGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEE-ESSSE
T ss_pred cchhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEE-CCCCc
Confidence 346788877 9999999999999653 35789999986543 23356789999999999999999999999 55678
Q ss_pred eEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccc
Q 002278 688 LLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARC 767 (943)
Q Consensus 688 ~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~ 767 (943)
++||||+++++|.+++. ....+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++.
T Consensus 93 ~lv~e~~~~~~L~~~l~---~~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~ 166 (291)
T 1xbb_A 93 MLVMEMAELGPLNKYLQ---QNRHVKDKNIIELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLSKA 166 (291)
T ss_dssp EEEEECCTTEEHHHHHH---HCTTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECCCTTCEE
T ss_pred EEEEEeCCCCCHHHHHH---hCcCCCHHHHHHHHHHHHHHHHHHHhC---CeEcCCCCcceEEEeCCCcEEEccCCccee
Confidence 99999999999999997 345689999999999999999999999 999999999999999999999999999987
Q ss_pred cCCCCCce--eeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHh-CCCCCCCCccHHHHHHHhccccccccccCc
Q 002278 768 IPTAMPHA--STFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILT-GKKAVDNESNLHQLIMSKADDNTVMEAVDP 844 (943)
Q Consensus 768 ~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 844 (943)
........ .....|++.|+|||++.+..++.++||||||+++|||+| |+.||.+............... ....+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~~---~~~~~ 243 (291)
T 1xbb_A 167 LRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGER---MGCPA 243 (291)
T ss_dssp CCTTCSEEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCC---CCCCT
T ss_pred eccCCCcccccccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHcCCC---CCCCC
Confidence 75443322 122346789999999998889999999999999999999 9999987655433222221111 01111
Q ss_pred ccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCCC
Q 002278 845 EVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLPA 890 (943)
Q Consensus 845 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~~ 890 (943)
. ....+.+++..||+.||++||++.++++.|+.+...
T Consensus 244 ~---------~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~ 280 (291)
T 1xbb_A 244 G---------CPREMYDLMNLCWTYDVENRPGFAAVELRLRNYYYD 280 (291)
T ss_dssp T---------CCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHH
T ss_pred C---------CCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHH
Confidence 1 124678999999999999999999999999877543
No 204
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*
Probab=100.00 E-value=1.5e-38 Score=348.50 Aligned_cols=266 Identities=23% Similarity=0.347 Sum_probs=202.1
Q ss_pred HHHHHHhhccccceEEeeeceEEEEEEEecC----CceEEEEEecccC--cccHHHHHHHHHHHhcCCCCCcceeeeEEe
Q 002278 609 DDIMRSTENLSEKYIVGYGASSTVYKCALKN----SRPIAVKKLYNQY--PHNLREFETELETIGSIRHRNIVSLHGYAL 682 (943)
Q Consensus 609 ~~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~----~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~ 682 (943)
+++....++|...+.||+|+||.||+|.... +..||+|++.... ....+.+.+|++++++++||||+++++++.
T Consensus 27 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~ 106 (313)
T 3brb_A 27 EDVVIDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCI 106 (313)
T ss_dssp TTTBCCGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEE
T ss_pred HhcccCHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEe
Confidence 3344456789999999999999999998653 3479999986543 334567889999999999999999999998
Q ss_pred cCCc-----ceEEEEEccCCChhhhccCC---CCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCC
Q 002278 683 SPYG-----NLLFYDYMVNGSLWDLLHGP---SKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDEN 754 (943)
Q Consensus 683 ~~~~-----~~lv~e~~~~g~L~~~l~~~---~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~ 754 (943)
+... .++||||+++|+|.+++... .....+++..++.++.|++.||+|||+. +|+||||||+||+++.+
T Consensus 107 ~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dikp~NIli~~~ 183 (313)
T 3brb_A 107 EMSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNR---NFLHRDLAARNCMLRDD 183 (313)
T ss_dssp C-------CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHHTT---TCCCCCCSGGGEEECTT
T ss_pred eccccCCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCcceEEEcCC
Confidence 7654 49999999999999998421 1345699999999999999999999999 99999999999999999
Q ss_pred CceeecccccccccCCCCC-ceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHh-CCCCCCCCccHHHHHHHh
Q 002278 755 FDAHLSDFGIARCIPTAMP-HASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILT-GKKAVDNESNLHQLIMSK 832 (943)
Q Consensus 755 ~~~kl~DFGla~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-G~~p~~~~~~~~~~~~~~ 832 (943)
+.+||+|||+++....... .......+++.|+|||++.+..++.++||||||+++|||++ |+.||.............
T Consensus 184 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~~~~~~~~ 263 (313)
T 3brb_A 184 MTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQNHEMYDYLL 263 (313)
T ss_dssp SCEEECSCSCC----------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGGGHHHHHH
T ss_pred CcEEEeecCcceecccccccCcccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccCCHHHHHHHHH
Confidence 9999999999987643322 12233457889999999999999999999999999999999 899998665443332222
Q ss_pred ccccccccccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCC
Q 002278 833 ADDNTVMEAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLP 889 (943)
Q Consensus 833 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~ 889 (943)
.... +..... ....+.+++..||+.||++|||+.+++++|+.+..
T Consensus 264 ~~~~-------~~~~~~-----~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~l~~ 308 (313)
T 3brb_A 264 HGHR-------LKQPED-----CLDELYEIMYSCWRTDPLDRPTFSVLRLQLEKLLE 308 (313)
T ss_dssp TTCC-------CCCBTT-----CCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred cCCC-------CCCCcc-----ccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHH
Confidence 2111 111111 12467899999999999999999999999987654
No 205
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Probab=100.00 E-value=8.2e-39 Score=353.82 Aligned_cols=261 Identities=25% Similarity=0.338 Sum_probs=210.2
Q ss_pred HhhccccceEEeeeceEEEEEEEecC------CceEEEEEecccC-cccHHHHHHHHHHHhcC-CCCCcceeeeEEecCC
Q 002278 614 STENLSEKYIVGYGASSTVYKCALKN------SRPIAVKKLYNQY-PHNLREFETELETIGSI-RHRNIVSLHGYALSPY 685 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~~------~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~ 685 (943)
..++|+..+.||+|+||.||+|.+.. ...||+|.+.... ....+.+.+|+++++.+ +||||+++++++.+.+
T Consensus 44 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~ 123 (333)
T 2i1m_A 44 PRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACTHGG 123 (333)
T ss_dssp CTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred CHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEecCC
Confidence 45789999999999999999999753 2479999986543 23456788999999999 8999999999999999
Q ss_pred cceEEEEEccCCChhhhccCCC-----------CCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCC
Q 002278 686 GNLLFYDYMVNGSLWDLLHGPS-----------KKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDEN 754 (943)
Q Consensus 686 ~~~lv~e~~~~g~L~~~l~~~~-----------~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~ 754 (943)
..++||||+++|+|.+++.... ....+++..++.++.|++.||+|||+. +|+||||||+||+++.+
T Consensus 124 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~NIl~~~~ 200 (333)
T 2i1m_A 124 PVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASK---NCIHRDVAARNVLLTNG 200 (333)
T ss_dssp SCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGCEEEGG
T ss_pred ceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhcC---CcccCCcccceEEECCC
Confidence 9999999999999999986321 123579999999999999999999999 99999999999999999
Q ss_pred CceeecccccccccCCCCCc-eeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHh-CCCCCCCCccHHHHHHHh
Q 002278 755 FDAHLSDFGIARCIPTAMPH-ASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILT-GKKAVDNESNLHQLIMSK 832 (943)
Q Consensus 755 ~~~kl~DFGla~~~~~~~~~-~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-G~~p~~~~~~~~~~~~~~ 832 (943)
+.+||+|||+++........ ......||+.|+|||++.+..++.++|||||||++|||+| |..||.+...........
T Consensus 201 ~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~~~~~~~~~ 280 (333)
T 2i1m_A 201 HVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILVNSKFYKLV 280 (333)
T ss_dssp GEEEBCCCGGGCCGGGCTTSEECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCSSHHHHHHH
T ss_pred CeEEECccccccccccccceeecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCcccchhHHHHHHH
Confidence 99999999999866433222 2223457889999999999999999999999999999999 999998654433332222
Q ss_pred ccccccccccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcC
Q 002278 833 ADDNTVMEAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLL 888 (943)
Q Consensus 833 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~ 888 (943)
...... ..... ....+.+++..||+.||++|||+.+++++|+.+.
T Consensus 281 ~~~~~~--~~~~~---------~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~ 325 (333)
T 2i1m_A 281 KDGYQM--AQPAF---------APKNIYSIMQACWALEPTHRPTFQQICSFLQEQA 325 (333)
T ss_dssp HHTCCC--CCCTT---------CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred hcCCCC--CCCCC---------CCHHHHHHHHHHhccChhhCcCHHHHHHHHHHHH
Confidence 211110 00111 1246778999999999999999999999998653
No 206
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}
Probab=100.00 E-value=9.5e-39 Score=350.73 Aligned_cols=263 Identities=22% Similarity=0.304 Sum_probs=206.4
Q ss_pred HhhccccceEEeeeceEEEEEEEec-CCceEEEEEecccCcccHHHHHHHHHHHhcCCCCCcceeeeEEec----CCcce
Q 002278 614 STENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYPHNLREFETELETIGSIRHRNIVSLHGYALS----PYGNL 688 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~----~~~~~ 688 (943)
..++|+..+.||+|+||.||+|... +++.||+|++........+.+.+|+++++.++||||+++++++.. ....+
T Consensus 27 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 106 (317)
T 2buj_A 27 DNKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHEAW 106 (317)
T ss_dssp TTEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEEEE
T ss_pred CCeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCceeE
Confidence 3568999999999999999999974 688999999876656667789999999999999999999999873 34678
Q ss_pred EEEEEccCCChhhhccCC-CCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccc
Q 002278 689 LFYDYMVNGSLWDLLHGP-SKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARC 767 (943)
Q Consensus 689 lv~e~~~~g~L~~~l~~~-~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~ 767 (943)
+||||+++|+|.+++... .....+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++.
T Consensus 107 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~dfg~~~~ 183 (317)
T 2buj_A 107 LLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHAK---GYAHRDLKPTNILLGDEGQPVLMDLGSMNQ 183 (317)
T ss_dssp EEEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCSSCEE
T ss_pred EEEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEcCCCCEEEEecCcchh
Confidence 999999999999988631 1235689999999999999999999999 999999999999999999999999999876
Q ss_pred cCCCCCc--------eeeeEecccceeCccccccCC---CCCcchhhhHHHHHHHHHhCCCCCCCC----ccHHHHHHHh
Q 002278 768 IPTAMPH--------ASTFVLGTIGYIDPEYAHTSR---LNEKSDVYSFGIVLLEILTGKKAVDNE----SNLHQLIMSK 832 (943)
Q Consensus 768 ~~~~~~~--------~~~~~~gt~~y~aPE~~~~~~---~~~~~DvwSlGvil~elltG~~p~~~~----~~~~~~~~~~ 832 (943)
....... ......||+.|+|||++.+.. ++.++|||||||++|||++|+.||... ........
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~-- 261 (317)
T 2buj_A 184 ACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVALAVQ-- 261 (317)
T ss_dssp SCEEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHHHHHTTSCHHHHHH--
T ss_pred cccccccccccccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhhhhcccchhhHHhh--
Confidence 5321100 001234699999999987654 689999999999999999999999531 11111111
Q ss_pred ccccccccccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCCCCCC
Q 002278 833 ADDNTVMEAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLPAPPA 893 (943)
Q Consensus 833 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~~~~~ 893 (943)
...... ..+. ....+.+++..||+.||++|||+.+++++|+.+.+..+.
T Consensus 262 -~~~~~~--~~~~---------~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~~~~~~~~ 310 (317)
T 2buj_A 262 -NQLSIP--QSPR---------HSSALWQLLNSMMTVDPHQRPHIPLLLSQLEALQPPAPG 310 (317)
T ss_dssp -CC--CC--CCTT---------SCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTCCCCCC
T ss_pred -ccCCCC--cccc---------CCHHHHHHHHHHhhcChhhCCCHHHHHHHhhhcCCCCCC
Confidence 100000 0111 124678999999999999999999999999988765443
No 207
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=100.00 E-value=2.6e-38 Score=357.81 Aligned_cols=272 Identities=19% Similarity=0.243 Sum_probs=213.7
Q ss_pred hhccccceEEeeeceEEEEEEEecC-CceEEEEEecccC-cccHHHHHHHHHHHhcCCCCCcceeeeEEecCC--cceEE
Q 002278 615 TENLSEKYIVGYGASSTVYKCALKN-SRPIAVKKLYNQY-PHNLREFETELETIGSIRHRNIVSLHGYALSPY--GNLLF 690 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~--~~~lv 690 (943)
.++|...+.||+|+||+||+|+++. ++.||||++.... ....+.+.+|++++++++||||+++++++.... ..++|
T Consensus 8 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~lv 87 (396)
T 4eut_A 8 NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVLI 87 (396)
T ss_dssp SEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEEE
T ss_pred CCceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeEEE
Confidence 4679999999999999999999874 8899999987543 345677889999999999999999999998765 56999
Q ss_pred EEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEE----CCCCceeeccccccc
Q 002278 691 YDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILI----DENFDAHLSDFGIAR 766 (943)
Q Consensus 691 ~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill----~~~~~~kl~DFGla~ 766 (943)
|||+++|+|.+++........+++..++.++.|++.||+|||+. +|+||||||+||++ +.++.+||+|||+++
T Consensus 88 ~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~a~ 164 (396)
T 4eut_A 88 MEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLREN---GIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAAR 164 (396)
T ss_dssp ECCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEECTTSCEEEEECCGGGCE
T ss_pred EecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHHC---CEEECCcCHHHEEEeecCCCceeEEEecCCCce
Confidence 99999999999997544444599999999999999999999999 99999999999999 778889999999998
Q ss_pred ccCCCCCceeeeEecccceeCcccccc--------CCCCCcchhhhHHHHHHHHHhCCCCCCCC----ccHHHHHHHhcc
Q 002278 767 CIPTAMPHASTFVLGTIGYIDPEYAHT--------SRLNEKSDVYSFGIVLLEILTGKKAVDNE----SNLHQLIMSKAD 834 (943)
Q Consensus 767 ~~~~~~~~~~~~~~gt~~y~aPE~~~~--------~~~~~~~DvwSlGvil~elltG~~p~~~~----~~~~~~~~~~~~ 834 (943)
....... .....||+.|+|||++.+ ..++.++|||||||++|||+||+.||... ............
T Consensus 165 ~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~~~~~~~~~~~~~~ 242 (396)
T 4eut_A 165 ELEDDEQ--FVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNKEVMYKIITG 242 (396)
T ss_dssp ECCCGGG--SSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTTCTTTCHHHHHHHHHS
T ss_pred EccCCCc--cccccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcccchHHHHHHHhcC
Confidence 7654322 223459999999998865 56788999999999999999999999632 222222222221
Q ss_pred ccc-cccc----------cCcccccC-ccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCCCC
Q 002278 835 DNT-VMEA----------VDPEVSVT-CVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLPAP 891 (943)
Q Consensus 835 ~~~-~~~~----------~~~~~~~~-~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~~~ 891 (943)
... .... ..+.++.. .........+.+++..||+.||++||+++++++.++.++...
T Consensus 243 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ll~~~L~~dP~~R~s~~e~l~~l~~il~~~ 311 (396)
T 4eut_A 243 KPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDILHRM 311 (396)
T ss_dssp CCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHHHTCE
T ss_pred CCcccchhheeccCCCcccCccCCcccccchHHHhhchHHHHHhhccChhhhccHHHHHHHHHHHhhce
Confidence 110 0000 00011111 112455667889999999999999999999999998887653
No 208
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=4.5e-38 Score=342.12 Aligned_cols=258 Identities=23% Similarity=0.369 Sum_probs=203.8
Q ss_pred ccccceEEeeeceEEEEEEEecCC----ceEEEEEecccCc-ccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcc-eEE
Q 002278 617 NLSEKYIVGYGASSTVYKCALKNS----RPIAVKKLYNQYP-HNLREFETELETIGSIRHRNIVSLHGYALSPYGN-LLF 690 (943)
Q Consensus 617 ~~~~~~~lG~G~~g~Vy~~~~~~~----~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~-~lv 690 (943)
.|...+.||+|+||+||+|.+.++ ..||+|++..... ...+.+.+|+++++.++||||+++++++.+.+.. ++|
T Consensus 22 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v 101 (298)
T 3pls_A 22 VTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPHVL 101 (298)
T ss_dssp EEEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEE
T ss_pred EEccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcEEE
Confidence 566678999999999999986532 2689999875433 3456788999999999999999999999877665 999
Q ss_pred EEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccCC
Q 002278 691 YDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIPT 770 (943)
Q Consensus 691 ~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~~ 770 (943)
|||+.+|+|.+++.. ....+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++....
T Consensus 102 ~e~~~~~~L~~~~~~--~~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~ 176 (298)
T 3pls_A 102 LPYMCHGDLLQFIRS--PQRNPTVKDLISFGLQVARGMEYLAEQ---KFVHRDLAARNCMLDESFTVKVADFGLARDILD 176 (298)
T ss_dssp ECCCTTCBHHHHHHC--TTCCCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCCEEECCTTSSCTTTT
T ss_pred EecccCCCHHHHHhc--cccCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCcceEEEcCCCcEEeCcCCCcccccC
Confidence 999999999999974 345689999999999999999999999 999999999999999999999999999986533
Q ss_pred CC---CceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCC-CCCCccHHHHHHHhccccccccccCccc
Q 002278 771 AM---PHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKA-VDNESNLHQLIMSKADDNTVMEAVDPEV 846 (943)
Q Consensus 771 ~~---~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 846 (943)
.. ........|++.|+|||.+.+..++.++|||||||++|||++|..| |....... ............ ....
T Consensus 177 ~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~- 252 (298)
T 3pls_A 177 REYYSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHIDPFD-LTHFLAQGRRLP--QPEY- 252 (298)
T ss_dssp GGGGCSCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCGGG-HHHHHHTTCCCC--CCTT-
T ss_pred CcccccccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCCccCCHHH-HHHHhhcCCCCC--CCcc-
Confidence 21 1112234578999999999999999999999999999999995555 44433322 222221111110 0111
Q ss_pred ccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCCCC
Q 002278 847 SVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLPAP 891 (943)
Q Consensus 847 ~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~~~ 891 (943)
....+.+++..||+.||++|||+.++++.|+.+....
T Consensus 253 --------~~~~l~~li~~~l~~~p~~Rps~~~ll~~l~~~~~~l 289 (298)
T 3pls_A 253 --------CPDSLYQVMQQCWEADPAVRPTFRVLVGEVEQIVSAL 289 (298)
T ss_dssp --------CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred --------chHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHH
Confidence 1246779999999999999999999999998876544
No 209
>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}
Probab=100.00 E-value=8.8e-38 Score=341.01 Aligned_cols=256 Identities=18% Similarity=0.233 Sum_probs=203.3
Q ss_pred hhccccceEEeeeceEEEEEEEec-CCceEEEEEecccC----cccHHHHHHHHHHHhcCCCCCcceeeeEEe--cCCcc
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQY----PHNLREFETELETIGSIRHRNIVSLHGYAL--SPYGN 687 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l~h~niv~l~~~~~--~~~~~ 687 (943)
.++|...+.||+|+||.||+|.+. +++.||+|++.... ....+.+.+|+++++.++||||+++++++. +....
T Consensus 4 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~ 83 (305)
T 2wtk_C 4 IGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQKM 83 (305)
T ss_dssp -CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---CE
T ss_pred ccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCeE
Confidence 468999999999999999999975 57899999986532 344577899999999999999999999984 44578
Q ss_pred eEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccc
Q 002278 688 LLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARC 767 (943)
Q Consensus 688 ~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~ 767 (943)
++||||++++ +.+++... ....+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||++..
T Consensus 84 ~lv~e~~~~~-l~~~~~~~-~~~~~~~~~~~~~~~qi~~al~~LH~~---~i~H~dlkp~NIl~~~~~~~kl~dfg~~~~ 158 (305)
T 2wtk_C 84 YMVMEYCVCG-MQEMLDSV-PEKRFPVCQAHGYFCQLIDGLEYLHSQ---GIVHKDIKPGNLLLTTGGTLKISALGVAEA 158 (305)
T ss_dssp EEEEECCSEE-HHHHHHHS-TTCSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTTCEE
T ss_pred EEEehhccCC-HHHHHHhC-cccccCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCcccEEEcCCCcEEeeccccccc
Confidence 9999999877 66666532 245689999999999999999999999 999999999999999999999999999987
Q ss_pred cCCCC-CceeeeEecccceeCccccccCC--CCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCc
Q 002278 768 IPTAM-PHASTFVLGTIGYIDPEYAHTSR--LNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDP 844 (943)
Q Consensus 768 ~~~~~-~~~~~~~~gt~~y~aPE~~~~~~--~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 844 (943)
..... ........||+.|+|||++.+.. ++.++||||||+++|||++|+.||.+.................. +
T Consensus 159 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~i~~~~~~~~----~ 234 (305)
T 2wtk_C 159 LHPFAADDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGDNIYKLFENIGKGSYAIP----G 234 (305)
T ss_dssp CCTTCSSCEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHCCCCCC----S
T ss_pred cCccccccccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCCchHHHHHHHHhcCCCCCC----C
Confidence 64322 12223345899999999988654 47899999999999999999999987654443333222211111 1
Q ss_pred ccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcC
Q 002278 845 EVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLL 888 (943)
Q Consensus 845 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~ 888 (943)
.. ...+.+++.+||+.||++|||+.+++++-+-..
T Consensus 235 ~~---------~~~l~~li~~~l~~dp~~Rps~~~ll~~~~~~~ 269 (305)
T 2wtk_C 235 DC---------GPPLSDLLKGMLEYEPAKRFSIRQIRQHSWFRK 269 (305)
T ss_dssp SS---------CHHHHHHHHHHTCSSTTTSCCHHHHHHSHHHHS
T ss_pred cc---------CHHHHHHHHHHccCChhhCCCHHHHhcCccccc
Confidence 11 145678999999999999999999999866433
No 210
>3gxj_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3hmm_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=100.00 E-value=3.2e-40 Score=359.92 Aligned_cols=262 Identities=24% Similarity=0.340 Sum_probs=192.1
Q ss_pred hhccccceEEeeeceEEEEEEEecCCceEEEEEecccCcccHHHHHHHHHHHhc--CCCCCcceeeeEEecCC----cce
Q 002278 615 TENLSEKYIVGYGASSTVYKCALKNSRPIAVKKLYNQYPHNLREFETELETIGS--IRHRNIVSLHGYALSPY----GNL 688 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~l~~~~~~~~----~~~ 688 (943)
.++|...+.||+|+||.||+|++. ++.||||++... ....+.+|.+++.. ++||||+++++++.... ..+
T Consensus 2 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~---~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~ 77 (303)
T 3gxj_A 2 ARTIVLQESIGKGRFGEVWRGKWR-GEEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLW 77 (303)
T ss_dssp GGGCCCCEEEEECSSSEEEEC-CT-TSCEEEEECC-T---THHHHHHHHHHHTSTTCCC-CBCCEEEEEEEECSSSEEEE
T ss_pred cceeeehhhccCCCCeEEEEEEEc-CcceEEEEeccc---chhhHHHHHHHHHHHhccCcceeeeeeecccCCCccceeE
Confidence 367999999999999999999876 889999998543 34667788888887 78999999999998776 679
Q ss_pred EEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhh--------hCCCCCeEecCCCCccEEECCCCceeec
Q 002278 689 LFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLH--------HDCNPRIIHRDVKSSNILIDENFDAHLS 760 (943)
Q Consensus 689 lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH--------~~~~~~ivH~Dlkp~Nill~~~~~~kl~ 760 (943)
+||||+++|+|.+++. ...+++..+..++.|++.||+||| +. +|+||||||+||+++.++.+||+
T Consensus 78 lv~e~~~~g~L~~~l~----~~~~~~~~~~~~~~~i~~~l~~lH~~~~~~~~~~---~ivH~Dlkp~Nil~~~~~~~kl~ 150 (303)
T 3gxj_A 78 LVSDYHEHGSLFDYLN----RYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKP---AIAHRDLKSKNILVKKNGTCCIA 150 (303)
T ss_dssp EEEECCTTCCHHHHHH----HCCBCC-CHHHHC-CHHHHHC-CCCCBCSTTCBC----CCCSCCCGGGC-CCTTCCC-BC
T ss_pred EEEeccCCCCHHHHHh----ccCcchHHHHHHHHHHHHHHHHHHHHHhhhccCC---CEeeCcCCHHHeEECCCCCEEEe
Confidence 9999999999999995 335788899999999999999999 77 99999999999999999999999
Q ss_pred ccccccccCCCCCce---eeeEecccceeCccccccC------CCCCcchhhhHHHHHHHHHhC----------CCCCCC
Q 002278 761 DFGIARCIPTAMPHA---STFVLGTIGYIDPEYAHTS------RLNEKSDVYSFGIVLLEILTG----------KKAVDN 821 (943)
Q Consensus 761 DFGla~~~~~~~~~~---~~~~~gt~~y~aPE~~~~~------~~~~~~DvwSlGvil~elltG----------~~p~~~ 821 (943)
|||+++......... .....||+.|+|||++.+. .++.++|||||||++|||+|| +.||..
T Consensus 151 DFg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~~~~~~p~~~ 230 (303)
T 3gxj_A 151 DLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYD 230 (303)
T ss_dssp CCCC-CCEETTTTEESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHC-CCCC-CTGGGBCBTTBC-CCCCTTTT
T ss_pred ecCcceeccCCCcccccccCCCCcCccccCHhhhcCcccccccccCcchhHHHHHHHHHHHHhcCCCccccceeeccccc
Confidence 999998765433221 2334699999999998876 344689999999999999999 666643
Q ss_pred CccH----HHHHHHhccccccccccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCCCCC
Q 002278 822 ESNL----HQLIMSKADDNTVMEAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLPAPP 892 (943)
Q Consensus 822 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~~~~ 892 (943)
.... ........ .....+..+...........+.+++..||+.||++|||+.++++.|+.+.....
T Consensus 231 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~l~~~~~ 300 (303)
T 3gxj_A 231 LVPSDPSVEEMRKVVC-----EQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQEG 300 (303)
T ss_dssp TCC-CCCCC-CHHHHT-----TSCCCCCCCGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHC-CCC--
T ss_pred cCCCCccHHHHHHHHH-----HhhcCCCccccccchhhHHHHHHHHHHHhccCcccCCCHHHHHHHHHHhhhhcc
Confidence 2110 01111100 111222333222233566788999999999999999999999999998876543
No 211
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}
Probab=100.00 E-value=2e-38 Score=358.12 Aligned_cols=262 Identities=23% Similarity=0.253 Sum_probs=201.6
Q ss_pred hhccccceEEeeeceEEEEEEEecCCceEEEEEecccCcccHHHHHHHHHHHhcCCCCCcceeeeEEecCCc------ce
Q 002278 615 TENLSEKYIVGYGASSTVYKCALKNSRPIAVKKLYNQYPHNLREFETELETIGSIRHRNIVSLHGYALSPYG------NL 688 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~------~~ 688 (943)
..+|+..+.||+|+||+||+|++..+..||+|++..... ...+|+++++.++||||+++++++..... .+
T Consensus 39 ~~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~~----~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~~ 114 (394)
T 4e7w_A 39 EIAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKR----FKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLN 114 (394)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCTT----SCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEEE
T ss_pred cceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCcc----hHHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEEE
Confidence 357999999999999999999998888899999865432 22369999999999999999999965433 68
Q ss_pred EEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEEC-CCCceeecccccccc
Q 002278 689 LFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILID-ENFDAHLSDFGIARC 767 (943)
Q Consensus 689 lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~-~~~~~kl~DFGla~~ 767 (943)
+||||++++.+............+++..+..++.|++.||+|||+. +|+||||||+||+++ .++.+||+|||+|+.
T Consensus 115 lv~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~~kL~DFG~a~~ 191 (394)
T 4e7w_A 115 LVLEYVPETVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIHSI---GICHRDIKPQNLLLDPPSGVLKLIDFGSAKI 191 (394)
T ss_dssp EEEECCSEEHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEETTTTEEEECCCTTCEE
T ss_pred EEeeccCccHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHEEEcCCCCcEEEeeCCCccc
Confidence 9999998765443332112345689999999999999999999999 999999999999999 799999999999987
Q ss_pred cCCCCCceeeeEecccceeCccccccC-CCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccc-------
Q 002278 768 IPTAMPHASTFVLGTIGYIDPEYAHTS-RLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVM------- 839 (943)
Q Consensus 768 ~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~------- 839 (943)
....... ....||+.|+|||++.+. .++.++||||+||++|||++|+.||.+.........+....+...
T Consensus 192 ~~~~~~~--~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~p~~~~~~~~ 269 (394)
T 4e7w_A 192 LIAGEPN--VSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGESGIDQLVEIIKVLGTPSREQIKTM 269 (394)
T ss_dssp CCTTCCC--CSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHH
T ss_pred ccCCCCC--cccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHHhh
Confidence 6443322 234589999999998765 589999999999999999999999998876665554433211110
Q ss_pred -----cccCcccccCc----cCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 002278 840 -----EAVDPEVSVTC----VDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLV 885 (943)
Q Consensus 840 -----~~~~~~~~~~~----~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~ 885 (943)
+...+...... ........+.+++.+||+.||++|||+.|+++|-+
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~ 324 (394)
T 4e7w_A 270 NPNYMEHKFPQIRPHPFSKVFRPRTPPDAIDLISRLLEYTPSARLTAIEALCHPF 324 (394)
T ss_dssp CGGGSSSCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHTSGG
T ss_pred ChhhhhhccccccCCcHHHhccccCCHHHHHHHHHHhCCChhhCCCHHHHhcChh
Confidence 00000000000 00012246789999999999999999999999854
No 212
>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*
Probab=100.00 E-value=5e-38 Score=346.45 Aligned_cols=261 Identities=25% Similarity=0.380 Sum_probs=208.3
Q ss_pred hhccccceEEeeeceEEEEEEEec-CCce--EEEEEecccC-cccHHHHHHHHHHHhcC-CCCCcceeeeEEecCCcceE
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK-NSRP--IAVKKLYNQY-PHNLREFETELETIGSI-RHRNIVSLHGYALSPYGNLL 689 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~--vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~l 689 (943)
.++|+..+.||+|+||.||+|+++ ++.. +|+|++.... ....+.+.+|+++++++ +||||+++++++.+.+..++
T Consensus 24 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~l 103 (327)
T 1fvr_A 24 WNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYL 103 (327)
T ss_dssp GGGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEE
T ss_pred HHHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCceEE
Confidence 468999999999999999999976 4554 4899886432 33456789999999999 89999999999999999999
Q ss_pred EEEEccCCChhhhccCCC-------------CCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCc
Q 002278 690 FYDYMVNGSLWDLLHGPS-------------KKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFD 756 (943)
Q Consensus 690 v~e~~~~g~L~~~l~~~~-------------~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~ 756 (943)
||||+++|+|.+++.... ....+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.
T Consensus 104 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~~~~~ 180 (327)
T 1fvr_A 104 AIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK---QFIHRDLAARNILVGENYV 180 (327)
T ss_dssp EECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECGGGC
T ss_pred EEecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCccceEEEcCCCe
Confidence 999999999999997432 234689999999999999999999999 9999999999999999999
Q ss_pred eeecccccccccCCCCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHh-CCCCCCCCccHHHHHHHhccc
Q 002278 757 AHLSDFGIARCIPTAMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILT-GKKAVDNESNLHQLIMSKADD 835 (943)
Q Consensus 757 ~kl~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-G~~p~~~~~~~~~~~~~~~~~ 835 (943)
+||+|||+++...... ......+++.|+|||++.+..++.++|||||||++|||+| |+.||.+.............
T Consensus 181 ~kL~Dfg~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~~~~~~~~~~~- 257 (327)
T 1fvr_A 181 AKIADFGLSRGQEVYV--KKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMTCAELYEKLPQG- 257 (327)
T ss_dssp EEECCTTCEESSCEEC--CC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHGGGT-
T ss_pred EEEcccCcCccccccc--cccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCCCcHHHHHHHhhcC-
Confidence 9999999997543221 1223347889999999998889999999999999999998 99999876544332222111
Q ss_pred cccccccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCCCCC
Q 002278 836 NTVMEAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLPAPP 892 (943)
Q Consensus 836 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~~~~ 892 (943)
. .+..... ....+.+++..||+.||++|||+.+++++|..+.....
T Consensus 258 ~------~~~~~~~-----~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~ 303 (327)
T 1fvr_A 258 Y------RLEKPLN-----CDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEERK 303 (327)
T ss_dssp C------CCCCCTT-----BCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSSS
T ss_pred C------CCCCCCC-----CCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhhc
Confidence 1 1111111 12467899999999999999999999999998776543
No 213
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*
Probab=100.00 E-value=4.3e-38 Score=345.37 Aligned_cols=261 Identities=23% Similarity=0.328 Sum_probs=204.3
Q ss_pred ccccceEEeeeceEEEEEEEec-----CCceEEEEEecccC-cccHHHHHHHHHHHhcCCCCCcceeeeEEecC--Ccce
Q 002278 617 NLSEKYIVGYGASSTVYKCALK-----NSRPIAVKKLYNQY-PHNLREFETELETIGSIRHRNIVSLHGYALSP--YGNL 688 (943)
Q Consensus 617 ~~~~~~~lG~G~~g~Vy~~~~~-----~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~--~~~~ 688 (943)
.|+..+.||+|+||+||+|.++ +++.||||++.... ....+.+.+|+++++.++||||+++++++.+. ...+
T Consensus 32 ~~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~ 111 (318)
T 3lxp_A 32 YLKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQ 111 (318)
T ss_dssp GEEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTEEE
T ss_pred HHhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCceEE
Confidence 3488999999999999988653 57889999997553 23456789999999999999999999999874 4578
Q ss_pred EEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeeccccccccc
Q 002278 689 LFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCI 768 (943)
Q Consensus 689 lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~ 768 (943)
+||||+++|+|.+++.. ..+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++..
T Consensus 112 lv~e~~~~~~L~~~l~~----~~~~~~~~~~i~~~l~~~l~~LH~~---~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~ 184 (318)
T 3lxp_A 112 LVMEYVPLGSLRDYLPR----HSIGLAQLLLFAQQICEGMAYLHAQ---HYIHRDLAARNVLLDNDRLVKIGDFGLAKAV 184 (318)
T ss_dssp EEECCCTTCBHHHHGGG----SCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCGGGCEEC
T ss_pred EEEecccCCcHHHHHhh----CCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCchheEEEcCCCCEEECCccccccc
Confidence 99999999999999963 3489999999999999999999999 9999999999999999999999999999887
Q ss_pred CCCCCc--eeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhc--------ccccc
Q 002278 769 PTAMPH--ASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKA--------DDNTV 838 (943)
Q Consensus 769 ~~~~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~--------~~~~~ 838 (943)
...... ......||+.|+|||++.+..++.++||||+||++|||+||+.||.............. .....
T Consensus 185 ~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (318)
T 3lxp_A 185 PEGHEYYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQGQMTVLRLTELL 264 (318)
T ss_dssp CTTCSEEEC---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred cccccccccccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccccchhhhhhhcccccchhHHHHHHHH
Confidence 554322 12234578889999999999999999999999999999999999975322110000000 00000
Q ss_pred ccccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCC
Q 002278 839 MEAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLP 889 (943)
Q Consensus 839 ~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~ 889 (943)
.......... .....+.+++..||+.||++|||+.++++.|+.+..
T Consensus 265 ~~~~~~~~~~-----~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~ 310 (318)
T 3lxp_A 265 ERGERLPRPD-----KCPAEVYHLMKNCWETEASFRPTFENLIPILKTVHE 310 (318)
T ss_dssp HTTCCCCCCT-----TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred hcccCCCCCc-----cccHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHH
Confidence 0000111111 112567899999999999999999999999987653
No 214
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=100.00 E-value=5.6e-38 Score=373.34 Aligned_cols=256 Identities=20% Similarity=0.301 Sum_probs=204.2
Q ss_pred ccccce-EEeeeceEEEEEEEec---CCceEEEEEecccC-cccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEEE
Q 002278 617 NLSEKY-IVGYGASSTVYKCALK---NSRPIAVKKLYNQY-PHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLFY 691 (943)
Q Consensus 617 ~~~~~~-~lG~G~~g~Vy~~~~~---~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 691 (943)
++.... .||+|+||.||+|.++ .+..||||++.... ....+.+.+|+++++.++|||||++++++.. +..++||
T Consensus 336 ~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~-~~~~lv~ 414 (613)
T 2ozo_A 336 NLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALMLVM 414 (613)
T ss_dssp SEEEEEEEEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEES-SSEEEEE
T ss_pred ceeEcCcEEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEecc-CCeEEEE
Confidence 344444 7999999999999875 35679999997643 3457889999999999999999999999976 5689999
Q ss_pred EEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccCCC
Q 002278 692 DYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIPTA 771 (943)
Q Consensus 692 e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~~~ 771 (943)
||+++|+|.+++.. ....+++.++..++.||+.||+|||++ +|+||||||+|||++.++.+||+|||+++.....
T Consensus 415 E~~~~g~L~~~l~~--~~~~l~~~~~~~i~~qi~~~L~~LH~~---~iiHrDlkp~NILl~~~~~vkL~DFGla~~~~~~ 489 (613)
T 2ozo_A 415 EMAGGGPLHKFLVG--KREEIPVSNVAELLHQVSMGMKYLEEK---NFVHRNLAARNVLLVNRHYAKISDFGLSKALGAD 489 (613)
T ss_dssp ECCTTCBHHHHHTT--CTTTSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCCSTTTTCC--
T ss_pred EeCCCCcHHHHHhh--ccCCCCHHHHHHHHHHHHHHHHHHHHC---CEEcCcCCHHHEEEcCCCcEEEeeccCcccccCC
Confidence 99999999999964 345699999999999999999999999 9999999999999999999999999999876433
Q ss_pred CCc--eeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHh-CCCCCCCCccHHHHHHHhccccccccccCccccc
Q 002278 772 MPH--ASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILT-GKKAVDNESNLHQLIMSKADDNTVMEAVDPEVSV 848 (943)
Q Consensus 772 ~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 848 (943)
... ......+++.|+|||++.+..++.++|||||||++|||+| |+.||.+............... ...+.
T Consensus 490 ~~~~~~~~~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~~~~~i~~~~~-------~~~p~ 562 (613)
T 2ozo_A 490 DSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGPEVMAFIEQGKR-------MECPP 562 (613)
T ss_dssp ------------CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCSHHHHHHHHTTCC-------CCCCT
T ss_pred CceeeeccCCCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHcCCC-------CCCCC
Confidence 221 1222335689999999999999999999999999999998 9999987665543333222111 11111
Q ss_pred CccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCCC
Q 002278 849 TCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLPA 890 (943)
Q Consensus 849 ~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~~ 890 (943)
. ....+.+++..||+.||++||++.++++.|+.+...
T Consensus 563 ~-----~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~~~ 599 (613)
T 2ozo_A 563 E-----CPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYS 599 (613)
T ss_dssp T-----CCHHHHHHHHHTTCSSTTTSCCHHHHHHHHHHHHHH
T ss_pred c-----CCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHH
Confidence 1 125678999999999999999999999999876543
No 215
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*
Probab=100.00 E-value=1.7e-38 Score=350.83 Aligned_cols=265 Identities=24% Similarity=0.314 Sum_probs=205.9
Q ss_pred HhhccccceEEeeeceEEEEEEEecC-CceEEEEEecccCcc--cHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEE
Q 002278 614 STENLSEKYIVGYGASSTVYKCALKN-SRPIAVKKLYNQYPH--NLREFETELETIGSIRHRNIVSLHGYALSPYGNLLF 690 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~vavK~~~~~~~~--~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 690 (943)
..++|+..+.||+|+||.||+|.+.. ++.||+|++...... ..+.+.+|+++++.++||||+++++++.+.+..++|
T Consensus 23 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv 102 (331)
T 4aaa_A 23 SMEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLV 102 (331)
T ss_dssp CGGGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred hhhhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEEEE
Confidence 35789999999999999999999864 789999998654332 345678999999999999999999999999999999
Q ss_pred EEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccCC
Q 002278 691 YDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIPT 770 (943)
Q Consensus 691 ~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~~ 770 (943)
|||+++++|.++.. ....+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++....
T Consensus 103 ~e~~~~~~l~~~~~---~~~~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~ 176 (331)
T 4aaa_A 103 FEFVDHTILDDLEL---FPNGLDYQVVQKYLFQIINGIGFCHSH---NIIHRDIKPENILVSQSGVVKLCDFGFARTLAA 176 (331)
T ss_dssp EECCSEEHHHHHHH---STTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCTTC-----
T ss_pred EecCCcchHHHHHh---hccCCCHHHHHHHHHHHHHHHHHHHHC---CEEccCcChheEEEcCCCcEEEEeCCCceeecC
Confidence 99999999988875 345689999999999999999999999 999999999999999999999999999987644
Q ss_pred CCCceeeeEecccceeCccccccC-CCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccc----------
Q 002278 771 AMPHASTFVLGTIGYIDPEYAHTS-RLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVM---------- 839 (943)
Q Consensus 771 ~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~---------- 839 (943)
... ......||+.|+|||++.+. .++.++||||+||++|||++|+.||................+...
T Consensus 177 ~~~-~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (331)
T 4aaa_A 177 PGE-VYDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDSDIDQLYHIMMCLGNLIPRHQELFNKN 255 (331)
T ss_dssp --------CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHHHHHHC
T ss_pred Ccc-ccCCCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCCCChhhhhHhhhc
Confidence 322 22334589999999998875 789999999999999999999999988776554443322111110
Q ss_pred ----cccCcccccCccC----HHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 002278 840 ----EAVDPEVSVTCVD----LSAVRKTFQLALLCTKRYPSERPTMQEVARVLV 885 (943)
Q Consensus 840 ----~~~~~~~~~~~~~----~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~ 885 (943)
....+........ ......+.+++..||+.||++|||+.|+++|-+
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~hp~ 309 (331)
T 4aaa_A 256 PVFAGVRLPEIKEREPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAELLHHDF 309 (331)
T ss_dssp GGGTTCCCCCCSSCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCGGGGGGSHH
T ss_pred cccccccCccccccchhhhcccchhHHHHHHHHHHhccCcccCCCHHHHhcCch
Confidence 0001111100000 012356889999999999999999999998754
No 216
>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...
Probab=100.00 E-value=1.8e-38 Score=354.45 Aligned_cols=260 Identities=23% Similarity=0.270 Sum_probs=191.0
Q ss_pred hhccccceEEeeeceEEEEEEEec-CCceEEEEEecccC--cccHHHHHHHHHHHhcCCCCCcceeeeEEecC------C
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQY--PHNLREFETELETIGSIRHRNIVSLHGYALSP------Y 685 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~------~ 685 (943)
.++|+..+.||+|+||.||+|.+. +++.||||++.... ....+.+.+|+++++.++||||+++++++... .
T Consensus 28 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~~ 107 (367)
T 2fst_X 28 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFN 107 (367)
T ss_dssp ETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred CCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccCC
Confidence 468999999999999999999965 57899999986543 23456788999999999999999999999764 4
Q ss_pred cceEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccc
Q 002278 686 GNLLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIA 765 (943)
Q Consensus 686 ~~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla 765 (943)
..++|+|++ +++|.+++.. ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||++
T Consensus 108 ~~~lv~e~~-~~~L~~~~~~----~~l~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kL~DFG~a 179 (367)
T 2fst_X 108 DVYLVTHLM-GADLNNIVKC----QKLTDDHVQFLIYQILRGLKYIHSA---DIIHRDLKPSNLAVNEDCELKILDFGLA 179 (367)
T ss_dssp CCEEEEECC-CEECC---------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECC----
T ss_pred eEEEEeccc-CCCHHHHHhc----CCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHhhEEECCCCCEEEeecccc
Confidence 579999998 7899988852 4699999999999999999999999 9999999999999999999999999999
Q ss_pred cccCCCCCceeeeEecccceeCcccccc-CCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCc
Q 002278 766 RCIPTAMPHASTFVLGTIGYIDPEYAHT-SRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDP 844 (943)
Q Consensus 766 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 844 (943)
+..... .....||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+.+....+..+....+.......+
T Consensus 180 ~~~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~l~~i~~~~g~p~~~~~~ 255 (367)
T 2fst_X 180 RHTADE----MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHIDQLKLILRLVGTPGAELLK 255 (367)
T ss_dssp ---------------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCSCCHHHHT
T ss_pred cccccc----CCCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHH
Confidence 865432 233569999999999887 679999999999999999999999999877665554443322211111000
Q ss_pred cccc-------------CccCH-----HHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhh
Q 002278 845 EVSV-------------TCVDL-----SAVRKTFQLALLCTKRYPSERPTMQEVARVLVS 886 (943)
Q Consensus 845 ~~~~-------------~~~~~-----~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~ 886 (943)
.+.. ..... .....+.+++.+||+.||++|||+.++++|-+-
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dLl~~mL~~dP~~R~t~~e~L~hp~~ 315 (367)
T 2fst_X 256 KISSESARNYIQSLTQMPKMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYF 315 (367)
T ss_dssp TCCCHHHHHHHHTSCCCCCCCHHHHTTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGG
T ss_pred HhhhHHHHHHHhccCCCCCCCHHHHCCCCCHHHHHHHHHhCCCCcccCcCHHHHhcChhh
Confidence 0000 00000 112457799999999999999999999998653
No 217
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Probab=100.00 E-value=5.1e-38 Score=362.98 Aligned_cols=263 Identities=19% Similarity=0.247 Sum_probs=188.8
Q ss_pred hhccccceEEeeeceEEEEEEEec-CCceEEEEEecccC--cccHHHHHHHHHHHhcCCCCCcceeeeEEecC-----Cc
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQY--PHNLREFETELETIGSIRHRNIVSLHGYALSP-----YG 686 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-----~~ 686 (943)
.++|+..+.||+|+||+||+|.++ +++.||||++.... ....+.+.+|+++++.++|||||++++++... ..
T Consensus 52 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~ 131 (458)
T 3rp9_A 52 PDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDE 131 (458)
T ss_dssp CTTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred CCCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCce
Confidence 468999999999999999999976 57899999996543 23456788999999999999999999998543 46
Q ss_pred ceEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeeccccccc
Q 002278 687 NLLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIAR 766 (943)
Q Consensus 687 ~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~ 766 (943)
.|+||||+ +|+|.+++. ....+++..+..++.||+.||+|||+. +||||||||+|||++.++.+||+|||+|+
T Consensus 132 ~~lv~e~~-~~~L~~~~~---~~~~l~~~~~~~~~~qi~~aL~~LH~~---~iiHrDlKp~NILl~~~~~~kl~DFGla~ 204 (458)
T 3rp9_A 132 LYVVLEIA-DSDFKKLFR---TPVYLTELHIKTLLYNLLVGVKYVHSA---GILHRDLKPANCLVNQDCSVKVCDFGLAR 204 (458)
T ss_dssp EEEEECCC-SEEHHHHHH---SSCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTCCEEECCCTTCB
T ss_pred EEEEEecc-ccchhhhcc---cCCCCCHHHHHHHHHHHHHHHHHHHhC---CcCCCCCChhhEEECCCCCEeecccccch
Confidence 79999987 679999886 345699999999999999999999999 99999999999999999999999999998
Q ss_pred ccCCCCC--------------------------ceeeeEecccceeCcccc-ccCCCCCcchhhhHHHHHHHHHh-----
Q 002278 767 CIPTAMP--------------------------HASTFVLGTIGYIDPEYA-HTSRLNEKSDVYSFGIVLLEILT----- 814 (943)
Q Consensus 767 ~~~~~~~--------------------------~~~~~~~gt~~y~aPE~~-~~~~~~~~~DvwSlGvil~ellt----- 814 (943)
....... ...+..+||+.|+|||++ .+..++.++|||||||++|||+|
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~elltg~~~~ 284 (458)
T 3rp9_A 205 TVDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLNMIKEN 284 (458)
T ss_dssp CTTSCTTCCCCCC---------------------------CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHTTSTTT
T ss_pred hccCccccccccccCccccccccccccccccccccccCCcccccccChHHhhCCCCCCcHhHHHHHHHHHHHHHHhcccc
Confidence 7643211 122345689999999976 55679999999999999999999
Q ss_pred ------CCCCCCCCcc--------------------HHHHHHHhcccccccc--------------------ccCccccc
Q 002278 815 ------GKKAVDNESN--------------------LHQLIMSKADDNTVME--------------------AVDPEVSV 848 (943)
Q Consensus 815 ------G~~p~~~~~~--------------------~~~~~~~~~~~~~~~~--------------------~~~~~~~~ 848 (943)
|+++|.+... ..++..+....+...+ .....+..
T Consensus 285 ~~~~~~~~p~f~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (458)
T 3rp9_A 285 VAYHADRGPLFPGSSCFPLSPDQKAGNDFKFHTRGNRDQLNVIFNILGTPSEEDIEALEKEDAKRYIRIFPKREGTDLAE 364 (458)
T ss_dssp CSSGGGCCCSCC--------------------CHHHHHHHHHHHHHHCCCCHHHHHTSSCHHHHHHHTTSCCCCCCCGGG
T ss_pred ccccccccccCCCCccccccccccccccccccccCCHHHHHHHHHHcCCCCHHHHhhcCCHHHHHHHHhcCCCCCCCHHH
Confidence 6777755431 1111111110000000 00000000
Q ss_pred CccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhh
Q 002278 849 TCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVS 886 (943)
Q Consensus 849 ~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~ 886 (943)
.. ......+.+++.+||..||++|||+.|+++|-+-
T Consensus 365 ~~--~~~s~~~~dLl~~mL~~dP~~R~t~~e~L~Hp~f 400 (458)
T 3rp9_A 365 RF--PASSADAIHLLKRMLVFNPNKRITINECLAHPFF 400 (458)
T ss_dssp GS--TTSCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGG
T ss_pred HC--CCCCHHHHHHHHHHhccCccccCCHHHHhcCHhh
Confidence 00 0112467799999999999999999999998653
No 218
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=100.00 E-value=7.9e-38 Score=347.35 Aligned_cols=265 Identities=25% Similarity=0.343 Sum_probs=211.7
Q ss_pred HHHHhhccccceEEeeeceEEEEEEEecCCceEEEEEecccCcccHHHHHHHHHHHhc--CCCCCcceeeeEEecCC---
Q 002278 611 IMRSTENLSEKYIVGYGASSTVYKCALKNSRPIAVKKLYNQYPHNLREFETELETIGS--IRHRNIVSLHGYALSPY--- 685 (943)
Q Consensus 611 ~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~l~~~~~~~~--- 685 (943)
.....++|+..+.||+|+||.||+|.+. ++.||||++... ....+.+|+++++. ++||||+++++++....
T Consensus 37 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~-~~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~~~ 112 (342)
T 1b6c_B 37 QRTIARTIVLQESIGKGRFGEVWRGKWR-GEEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTW 112 (342)
T ss_dssp HHHHHHHCEEEEEEEEETTEEEEEEEET-TEEEEEEEECGG---GHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCCSSC
T ss_pred cccccccEEEEeeecCCCCcEEEEEEEc-CccEEEEEeCch---hHHHHHHHHHHHHHhhcCCCcEEEEEeeecccCCcc
Confidence 3445678999999999999999999985 889999998543 34677888888887 78999999999998876
Q ss_pred -cceEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhh--------hCCCCCeEecCCCCccEEECCCCc
Q 002278 686 -GNLLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLH--------HDCNPRIIHRDVKSSNILIDENFD 756 (943)
Q Consensus 686 -~~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH--------~~~~~~ivH~Dlkp~Nill~~~~~ 756 (943)
..++||||+++|+|.+++. ...+++.+++.++.|++.||+||| +. +|+||||||+||+++.++.
T Consensus 113 ~~~~lv~e~~~~g~L~~~l~----~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~---~ivH~Dlkp~NIll~~~~~ 185 (342)
T 1b6c_B 113 TQLWLVSDYHEHGSLFDYLN----RYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKP---AIAHRDLKSKNILVKKNGT 185 (342)
T ss_dssp CCEEEEECCCTTCBHHHHHH----HCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBC---EEECSCCSGGGEEECTTSC
T ss_pred ceeEEEEeecCCCcHHHHHh----ccCccHHHHHHHHHHHHHHHHHHHHHHhhhcccC---CeeeCCCCHHHEEECCCCC
Confidence 6899999999999999996 246899999999999999999999 77 9999999999999999999
Q ss_pred eeecccccccccCCCCCc---eeeeEecccceeCccccccCC------CCCcchhhhHHHHHHHHHhC----------CC
Q 002278 757 AHLSDFGIARCIPTAMPH---ASTFVLGTIGYIDPEYAHTSR------LNEKSDVYSFGIVLLEILTG----------KK 817 (943)
Q Consensus 757 ~kl~DFGla~~~~~~~~~---~~~~~~gt~~y~aPE~~~~~~------~~~~~DvwSlGvil~elltG----------~~ 817 (943)
+||+|||+++........ ......||+.|+|||++.+.. ++.++|||||||++|||+|| +.
T Consensus 186 ~kL~Dfg~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~ 265 (342)
T 1b6c_B 186 CCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQL 265 (342)
T ss_dssp EEECCCTTCEEEETTTTEEEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCC
T ss_pred EEEEECCCceeccccccccccccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhccCcCCccccccc
Confidence 999999999876544322 122346899999999988752 33689999999999999999 77
Q ss_pred CCCCCc----cHHHHHHHhccccccccccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCCCC
Q 002278 818 AVDNES----NLHQLIMSKADDNTVMEAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLPAP 891 (943)
Q Consensus 818 p~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~~~ 891 (943)
||.... ....+...... . ...+.++...........+.+++..||+.||++|||+.+++++|+.+....
T Consensus 266 p~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~i~~~L~~i~~~~ 338 (342)
T 1b6c_B 266 PYYDLVPSDPSVEEMRKVVCE-Q----KLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQLSQQE 338 (342)
T ss_dssp TTTTTSCSSCCHHHHHHHHTT-S----CCCCCCCGGGGTSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHHHHHHHHTT
T ss_pred CccccCcCcccHHHHHHHHHH-H----HhCCCCcccccchhHHHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHHHh
Confidence 886432 22222222211 1 122222222223356678899999999999999999999999999876543
No 219
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=100.00 E-value=2e-38 Score=380.66 Aligned_cols=252 Identities=18% Similarity=0.239 Sum_probs=212.0
Q ss_pred HhhccccceEEeeeceEEEEEEEec-CCceEEEEEeccc---CcccHHHHHHHHHHHhcC-CCCCcceeeeEEecCCcce
Q 002278 614 STENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQ---YPHNLREFETELETIGSI-RHRNIVSLHGYALSPYGNL 688 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~ 688 (943)
..++|+..+.||+|+||.||+|+.+ +++.||||++.+. .....+.+..|.++++.+ +||+|+.+++++.+.+..|
T Consensus 339 ~~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~~ 418 (674)
T 3pfq_A 339 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY 418 (674)
T ss_dssp -CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEEE
T ss_pred cccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEEE
Confidence 4678999999999999999999976 4678999998643 233456788899999988 6999999999999999999
Q ss_pred EEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeeccccccccc
Q 002278 689 LFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCI 768 (943)
Q Consensus 689 lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~ 768 (943)
+||||+++|+|.+++. ....+++..+..++.||+.||+|||+. +||||||||+|||++.++++||+|||+|+..
T Consensus 419 lV~E~~~gg~L~~~l~---~~~~~~~~~~~~~~~qi~~aL~~LH~~---gIiHrDLKp~NILl~~~g~ikL~DFGla~~~ 492 (674)
T 3pfq_A 419 FVMEYVNGGDLMYHIQ---QVGRFKEPHAVFYAAEIAIGLFFLQSK---GIIYRDLKLDNVMLDSEGHIKIADFGMCKEN 492 (674)
T ss_dssp EEEECCCSCBHHHHHH---HHSSCCHHHHHHHHHHHHHHHHHHHHT---SEECCCCCSTTEEECSSSCEEECCCTTCEEC
T ss_pred EEEeCcCCCcHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHhC---CeEeccCChhhEEEcCCCcEEEeecceeecc
Confidence 9999999999999997 345799999999999999999999999 9999999999999999999999999999864
Q ss_pred CCCCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCccccc
Q 002278 769 PTAMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPEVSV 848 (943)
Q Consensus 769 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 848 (943)
..... .....+||+.|+|||++.+..++.++|||||||++|||++|+.||.+.+.......+......++.. +
T Consensus 493 ~~~~~-~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~~~~~~~~~i~~~~~~~p~~----~-- 565 (674)
T 3pfq_A 493 IWDGV-TTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGEDEDELFQSIMEHNVAYPKS----M-- 565 (674)
T ss_dssp CCTTC-CBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHSSCCCCCTT----S--
T ss_pred ccCCc-ccccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCCCCCHHHHHHHHHhCCCCCCcc----C--
Confidence 33322 2334569999999999999999999999999999999999999999877665555554433332221 1
Q ss_pred CccCHHHHHHHHHHHHHccCCCCCCCCCH-----HHHHHHHh
Q 002278 849 TCVDLSAVRKTFQLALLCTKRYPSERPTM-----QEVARVLV 885 (943)
Q Consensus 849 ~~~~~~~~~~l~~l~~~cl~~dP~~RPt~-----~el~~~L~ 885 (943)
...+.+++..||+.||++||++ .|+.+|-+
T Consensus 566 -------s~~~~~li~~lL~~dP~~R~~~~~~~~~ei~~h~f 600 (674)
T 3pfq_A 566 -------SKEAVAICKGLMTKHPGKRLGCGPEGERDIKEHAF 600 (674)
T ss_dssp -------CHHHHHHHHHHSCSSSTTCTTCSTTHHHHHHSSGG
T ss_pred -------CHHHHHHHHHHccCCHHHCCCCCCCcHHHHhcCcc
Confidence 1456789999999999999987 88887643
No 220
>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*
Probab=100.00 E-value=1.3e-38 Score=342.91 Aligned_cols=257 Identities=21% Similarity=0.287 Sum_probs=205.2
Q ss_pred hhccccceEEeeeceEEEEEEEec-CCceEEEEEecccC--cccHHHHHHHHHHHhcCCCCCcceeeeEEec--CCcceE
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQY--PHNLREFETELETIGSIRHRNIVSLHGYALS--PYGNLL 689 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~--~~~~~l 689 (943)
.++|+..+.||+|+||.||+|..+ +++.||+|++.... ....+.+.+|++++++++||||+++++++.+ ....++
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~l 84 (279)
T 2w5a_A 5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYI 84 (279)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEEE
T ss_pred hhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEEE
Confidence 468999999999999999999986 57889999986543 3345678899999999999999999998854 567899
Q ss_pred EEEEccCCChhhhccCCC-CCccCCHHHHHHHHHHHHHHHHHhhhCCCCC-----eEecCCCCccEEECCCCceeecccc
Q 002278 690 FYDYMVNGSLWDLLHGPS-KKVKLDWETRLKIAVGAAQGLAYLHHDCNPR-----IIHRDVKSSNILIDENFDAHLSDFG 763 (943)
Q Consensus 690 v~e~~~~g~L~~~l~~~~-~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~-----ivH~Dlkp~Nill~~~~~~kl~DFG 763 (943)
||||+++|+|.+++.... ....+++..++.++.|++.||+|||+. + |+||||||+||+++.++.+||+|||
T Consensus 85 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~---~~~~~~ivH~dl~p~NIl~~~~~~~kl~dfg 161 (279)
T 2w5a_A 85 VMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRR---SDGGHTVLHRDLKPANVFLDGKQNVKLGDFG 161 (279)
T ss_dssp EEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHH---C------CCCCCSGGGEEECSSSCEEECCCC
T ss_pred EEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhcc---cCCCCeeEEeccchhhEEEcCCCCEEEecCc
Confidence 999999999999986321 123489999999999999999999998 7 9999999999999999999999999
Q ss_pred cccccCCCCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccC
Q 002278 764 IARCIPTAMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVD 843 (943)
Q Consensus 764 la~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 843 (943)
+++........ .....|++.|+|||++.+..++.++||||||+++|||++|+.||................. ....
T Consensus 162 ~~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~i~~~~~---~~~~ 237 (279)
T 2w5a_A 162 LARILNHDTSF-AKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQKELAGKIREGKF---RRIP 237 (279)
T ss_dssp HHHHC---CHH-HHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCC---CCCC
T ss_pred hheeecccccc-ccccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCcccCHHHHHHHHhhccc---ccCC
Confidence 99876543221 1224589999999999999999999999999999999999999987654332222221111 0111
Q ss_pred cccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhc
Q 002278 844 PEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSL 887 (943)
Q Consensus 844 ~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~ 887 (943)
..+ ...+.+++..||+.||++|||+.|++++++..
T Consensus 238 ~~~---------~~~l~~li~~~l~~~p~~Rps~~~ll~~~~~~ 272 (279)
T 2w5a_A 238 YRY---------SDELNEIITRMLNLKDYHRPSVEEILENPLIL 272 (279)
T ss_dssp TTS---------CHHHHHHHHHHTCSSGGGSCCHHHHHTSTTCC
T ss_pred ccc---------CHHHHHHHHHHcCCCcccCCCHHHHHhChhhh
Confidence 111 24677899999999999999999999987643
No 221
>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...
Probab=100.00 E-value=6.4e-38 Score=341.07 Aligned_cols=264 Identities=22% Similarity=0.282 Sum_probs=207.5
Q ss_pred hccccceEEeeeceEEEEEEEec-CCceEEEEEecccC--cccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEEEE
Q 002278 616 ENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQY--PHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLFYD 692 (943)
Q Consensus 616 ~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 692 (943)
++|+..+.||+|+||.||+|..+ +++.||+|++.... ....+.+.+|++++++++||||+++++++..++..++|||
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 82 (299)
T 2r3i_A 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFE 82 (299)
T ss_dssp TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC--------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred chhhhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCccchhhHHHHHHHHHHHHHcCCCCeeeEEEEEecCCceEEEEE
Confidence 57899999999999999999986 68899999986443 2234678899999999999999999999999999999999
Q ss_pred EccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccCCCC
Q 002278 693 YMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIPTAM 772 (943)
Q Consensus 693 ~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~~~~ 772 (943)
|+. |+|.+++... ....+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++......
T Consensus 83 ~~~-~~L~~~~~~~-~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~ 157 (299)
T 2r3i_A 83 FLH-QDLKKFMDAS-ALTGIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPV 157 (299)
T ss_dssp CCS-EEHHHHHHHT-TTTCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECSTTHHHHHCCCS
T ss_pred ccc-CCHHHHHHhh-hccCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHeEEcCCCCEEECcchhhhhccCCc
Confidence 997 6999988643 224589999999999999999999999 99999999999999999999999999998764332
Q ss_pred CceeeeEecccceeCccccccCC-CCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCc-------
Q 002278 773 PHASTFVLGTIGYIDPEYAHTSR-LNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDP------- 844 (943)
Q Consensus 773 ~~~~~~~~gt~~y~aPE~~~~~~-~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~------- 844 (943)
. ......||+.|+|||++.+.. ++.++|||||||++|||+||+.||.+..............+...+...+
T Consensus 158 ~-~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (299)
T 2r3i_A 158 R-TYTHEVVTLWYRAPEILLGAKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPD 236 (299)
T ss_dssp B-CTTSCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCTTTSTTGGGSTT
T ss_pred c-ccCcccccccccCcHHhhccccCChHHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHhCCCchhhhhHhhcCcc
Confidence 1 122345899999999988765 7999999999999999999999999877665554443322221111111
Q ss_pred ---ccccCc-cCH-----HHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 002278 845 ---EVSVTC-VDL-----SAVRKTFQLALLCTKRYPSERPTMQEVARVLV 885 (943)
Q Consensus 845 ---~~~~~~-~~~-----~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~ 885 (943)
.+.... ... .....+.+++.+|++.||++|||+.++++|-+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~~l~hp~ 286 (299)
T 2r3i_A 237 YKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPF 286 (299)
T ss_dssp CCTTSCCCCCCCHHHHSTTCCHHHHHHHHHHTCSSTTTSCCHHHHHTSGG
T ss_pred cchhhhcccchhhHhhCCCCCHHHHHHHHHhcCcCcccCCCHHHHhcChh
Confidence 110000 000 11256779999999999999999999999755
No 222
>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*
Probab=100.00 E-value=8.3e-38 Score=339.98 Aligned_cols=255 Identities=25% Similarity=0.317 Sum_probs=208.8
Q ss_pred HhhccccceEEeeeceEEEEEEEec-CCceEEEEEecccCc---------ccHHHHHHHHHHHhcCC-CCCcceeeeEEe
Q 002278 614 STENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYP---------HNLREFETELETIGSIR-HRNIVSLHGYAL 682 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~---------~~~~~~~~E~~~l~~l~-h~niv~l~~~~~ 682 (943)
..++|+..+.||+|+||.||+|.++ +++.||+|++..... ...+.+.+|+++++++. ||||+++++++.
T Consensus 15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~ 94 (298)
T 1phk_A 15 FYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYE 94 (298)
T ss_dssp CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEE
T ss_pred hhhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeec
Confidence 4578999999999999999999986 578999999864431 22356789999999996 999999999999
Q ss_pred cCCcceEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeeccc
Q 002278 683 SPYGNLLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDF 762 (943)
Q Consensus 683 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DF 762 (943)
.....++||||+++++|.+++. ....+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+||
T Consensus 95 ~~~~~~lv~e~~~~~~L~~~l~---~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~df 168 (298)
T 1phk_A 95 TNTFFFLVFDLMKKGELFDYLT---EKVTLSEKETRKIMRALLEVICALHKL---NIVHRDLKPENILLDDDMNIKLTDF 168 (298)
T ss_dssp CSSEEEEEEECCTTCBHHHHHH---HHSSCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCC
T ss_pred cCCeEEEEEeccCCCcHHHHHh---ccCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCcceEEEcCCCcEEEecc
Confidence 9999999999999999999996 345689999999999999999999999 9999999999999999999999999
Q ss_pred ccccccCCCCCceeeeEecccceeCccccc------cCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhcccc
Q 002278 763 GIARCIPTAMPHASTFVLGTIGYIDPEYAH------TSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDN 836 (943)
Q Consensus 763 Gla~~~~~~~~~~~~~~~gt~~y~aPE~~~------~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~ 836 (943)
|++........ .....|++.|+|||++. ...++.++||||||+++|||++|+.||.................
T Consensus 169 g~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~ 246 (298)
T 1phk_A 169 GFSCQLDPGEK--LREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRKQMLMLRMIMSGNY 246 (298)
T ss_dssp TTCEECCTTCC--BCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHTCC
T ss_pred cchhhcCCCcc--cccccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCcCccHHHHHHHHhcCCc
Confidence 99987654322 22345899999999875 45688999999999999999999999987665444333332222
Q ss_pred ccccccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 002278 837 TVMEAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLV 885 (943)
Q Consensus 837 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~ 885 (943)
.......+.+ ...+.+++..||+.||++|||+.+++++-+
T Consensus 247 ~~~~~~~~~~---------~~~l~~li~~~l~~dp~~Rps~~~ll~h~~ 286 (298)
T 1phk_A 247 QFGSPEWDDY---------SDTVKDLVSRFLVVQPQKRYTAEEALAHPF 286 (298)
T ss_dssp CCCTTTGGGS---------CHHHHHHHHHHCCSSGGGSCCHHHHTTSGG
T ss_pred ccCccccccc---------CHHHHHHHHHHccCCcccCCCHHHHHhChH
Confidence 2111111111 246789999999999999999999988644
No 223
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.6e-37 Score=361.39 Aligned_cols=320 Identities=19% Similarity=0.204 Sum_probs=168.1
Q ss_pred CEEEeeCCcccccCCCCccCCCCCcEEeccCCCcCCccchhccccccceEEEecCcccccCCCcccCCCCCCcEEEEecc
Q 002278 65 QSIDFQGNKLTGQIPDEIGNCGSLVHIELSDNSLYGDIPFSISKLKQLEFLNLKNNQLTGPIPSTLTQIPNLKTLDLARN 144 (943)
Q Consensus 65 ~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 144 (943)
+.++.++++++ .+|..+. ++|++|+|++|+|++..|..|.++++|++|+|++|.+++..|..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 46777777777 5665543 46777777777777655666777777777777777777666666777777777766666
Q ss_pred ccccccchhccccccceeccccCCccCCCCCcccccccccceeeccceecccccCCCCcCCCcccEEEeecccccCcCCC
Q 002278 145 QLTGEIPRLIYWNEVLQYLGLRGNALTGMLSPDMCQLTGLWYFDVRGNNLTGTIPDSIGNCTSFEILDISYNQITGEIPY 224 (943)
Q Consensus 145 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~ 224 (943)
+++...+..|.. +++|++|+|++|++++..+..|.++++|++|+|++|++++
T Consensus 91 ~l~~~~~~~~~~------------------------l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~---- 142 (477)
T 2id5_A 91 RLKLIPLGVFTG------------------------LSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVY---- 142 (477)
T ss_dssp CCCSCCTTSSTT------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCE----
T ss_pred cCCccCcccccC------------------------CCCCCEEECCCCccccCChhHccccccCCEEECCCCccce----
Confidence 666433333444 4444444444444444444445555555555555444432
Q ss_pred CCCcceEeEEEecCccccccCCccccccCCCcEEecCCCCCCCCCCcccCCCCCcceEEecCCCCCCCCCCCcCCCCcCc
Q 002278 225 NIGFLQVATLSLQGNKLTGKIPEVIGLMQALAVLDLSENELVGPIPPILGNLSYTGKLYLHGNKLTGPIPPELGNMSKLS 304 (943)
Q Consensus 225 ~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 304 (943)
..+..|..+++|+.|+|++|.+++..+..|.++++|+.|+|++|.+++..+..|..+++|+
T Consensus 143 -------------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~ 203 (477)
T 2id5_A 143 -------------------ISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLK 203 (477)
T ss_dssp -------------------ECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCC
T ss_pred -------------------eChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccc
Confidence 1222333344444444444444433333344444444444444444444444444445555
Q ss_pred EEEcccCccccccccccCCcccceEEEccccccCCcCcccccCCCcCcEEEeeCCcccCcccccccccCccceeeccCCc
Q 002278 305 YLQLQNNQLVGTIPAELGKLEQLFELNLADNNLEGPIPHNISSCTALNQFNVHGNRLSGAIPSSFRNLGSLTYLNLSRNN 384 (943)
Q Consensus 305 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 384 (943)
.|++++|...+.+|..+.... +|+.|++++|++++..+..|..+++|+.|+|++|+
T Consensus 204 ~L~l~~~~~~~~~~~~~~~~~------------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 259 (477)
T 2id5_A 204 VLEISHWPYLDTMTPNCLYGL------------------------NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNP 259 (477)
T ss_dssp EEEEECCTTCCEECTTTTTTC------------------------CCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSC
T ss_pred eeeCCCCccccccCcccccCc------------------------cccEEECcCCcccccCHHHhcCccccCeeECCCCc
Confidence 555555444333333333333 44444444444443333344444444444444444
Q ss_pred CCCCCCCCCCCCCCccEEecCCCcCCCccCCCcccccccceeecccccccccCCccccCCCccceecccCcccc
Q 002278 385 FKGKVPTELGRIINLDTLDLSVNNFSGSVPASIGDLEHLLTLNLSRNHLNGLLPAEFGNLRSIQTIDMSFNQLS 458 (943)
Q Consensus 385 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 458 (943)
+++..+..+..+++|+.|+|++|++++..|..|..+++|+.|+|++|+|++..+..|..+++|++|+|++|+++
T Consensus 260 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 260 ISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp CCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred CCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 44444444555555555555555555444555555555555555555555554555555555666666666555
No 224
>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*
Probab=100.00 E-value=8.9e-38 Score=337.92 Aligned_cols=249 Identities=17% Similarity=0.252 Sum_probs=202.4
Q ss_pred HhhccccceEEeeeceEEEEEEEec-CCceEEEEEecccC--cccHHHHHHHHHHHhcC-CCCCcceeeeEEecCCcceE
Q 002278 614 STENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQY--PHNLREFETELETIGSI-RHRNIVSLHGYALSPYGNLL 689 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~l 689 (943)
..++|+..+.||+|+||+||+|.+. +++.||+|++.... ......+.+|+..+..+ +||||+++++++.+++..++
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~l 88 (289)
T 1x8b_A 9 YTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLI 88 (289)
T ss_dssp HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEEE
T ss_pred ccchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEE
Confidence 4578999999999999999999986 68999999987543 33456788899999998 89999999999999999999
Q ss_pred EEEEccCCChhhhccCCCC-CccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCC--------------
Q 002278 690 FYDYMVNGSLWDLLHGPSK-KVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDEN-------------- 754 (943)
Q Consensus 690 v~e~~~~g~L~~~l~~~~~-~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~-------------- 754 (943)
||||+++|+|.+++..... ...+++..+..++.|++.||+|||++ +|+||||||+||+++.+
T Consensus 89 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dikp~NIl~~~~~~~~~~~~~~~~~~ 165 (289)
T 1x8b_A 89 QNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHSM---SLVHMDIKPSNIFISRTSIPNAASEEGDEDD 165 (289)
T ss_dssp EEECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEC----------------
T ss_pred EEEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHhC---CEeecCCCHHHEEEcCCCCCccccccccccc
Confidence 9999999999999863211 25689999999999999999999999 99999999999999844
Q ss_pred -----CceeecccccccccCCCCCceeeeEecccceeCccccccC-CCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHH
Q 002278 755 -----FDAHLSDFGIARCIPTAMPHASTFVLGTIGYIDPEYAHTS-RLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQL 828 (943)
Q Consensus 755 -----~~~kl~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~ 828 (943)
..+||+|||.++....... ..||+.|+|||++.+. .++.++|||||||++|||++|.+|+.........
T Consensus 166 ~~~~~~~~kl~Dfg~~~~~~~~~~-----~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~~~ 240 (289)
T 1x8b_A 166 WASNKVMFKIGDLGHVTRISSPQV-----EEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPRNGDQWHEI 240 (289)
T ss_dssp ----CCCEEECCCTTCEETTCSCC-----CCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCCCCCSSSHHHHHH
T ss_pred ccCCceEEEEcccccccccCCccc-----cCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCCCCCcchhHHHHH
Confidence 4799999999987654322 2489999999999876 5678999999999999999999887655433222
Q ss_pred HHHhccccccccccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 002278 829 IMSKADDNTVMEAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLV 885 (943)
Q Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~ 885 (943)
. .... ....+.+ ...+.+++..||+.||++|||+.++++|-+
T Consensus 241 ~---~~~~---~~~~~~~---------~~~~~~li~~~l~~dp~~Rps~~~ll~h~~ 282 (289)
T 1x8b_A 241 R---QGRL---PRIPQVL---------SQEFTELLKVMIHPDPERRPSAMALVKHSV 282 (289)
T ss_dssp H---TTCC---CCCSSCC---------CHHHHHHHHHHTCSSGGGSCCHHHHHTCTT
T ss_pred H---cCCC---CCCCccc---------CHHHHHHHHHHhCCCcccCCCHHHHhhChH
Confidence 1 1110 1111111 146778999999999999999999998754
No 225
>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*
Probab=100.00 E-value=1.1e-37 Score=356.65 Aligned_cols=198 Identities=22% Similarity=0.326 Sum_probs=166.2
Q ss_pred hhccccceEEeeeceEEEEEEEec-CCceEEEEEecccC--cccHHHHHHHHHHHhcCCCCCcceeeeEEecC-----Cc
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQY--PHNLREFETELETIGSIRHRNIVSLHGYALSP-----YG 686 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-----~~ 686 (943)
.++|+..+.||+|+||.||+|.++ +++.||||++.... ....+.+.+|+++++.++||||+++++++... ..
T Consensus 25 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~ 104 (432)
T 3n9x_A 25 PDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFDE 104 (432)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred cCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCCe
Confidence 468999999999999999999976 47889999997543 23456788999999999999999999999776 46
Q ss_pred ceEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeeccccccc
Q 002278 687 NLLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIAR 766 (943)
Q Consensus 687 ~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~ 766 (943)
.++||||+. |+|.+++. ....+++..+..++.||+.||+|||+. +|+||||||+||+++.++.+||+|||+|+
T Consensus 105 ~~lv~e~~~-~~L~~~~~---~~~~l~~~~~~~i~~qil~aL~~LH~~---givHrDlkp~NILl~~~~~~kL~DFGla~ 177 (432)
T 3n9x_A 105 LYIVLEIAD-SDLKKLFK---TPIFLTEEHIKTILYNLLLGENFIHES---GIIHRDLKPANCLLNQDCSVKVCDFGLAR 177 (432)
T ss_dssp EEEEEECCS-EEHHHHHH---SSCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCE
T ss_pred EEEEEecCC-cCHHHHHh---ccCCCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCHHHeEECCCCCEEEccCCCcc
Confidence 899999985 69999997 345699999999999999999999999 99999999999999999999999999998
Q ss_pred ccCCCCCc---------------------eeeeEecccceeCcccc-ccCCCCCcchhhhHHHHHHHHHhCCCCC
Q 002278 767 CIPTAMPH---------------------ASTFVLGTIGYIDPEYA-HTSRLNEKSDVYSFGIVLLEILTGKKAV 819 (943)
Q Consensus 767 ~~~~~~~~---------------------~~~~~~gt~~y~aPE~~-~~~~~~~~~DvwSlGvil~elltG~~p~ 819 (943)
........ ..+..+||+.|+|||++ .+..++.++||||+||++|||++|..||
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~g~~p~ 252 (432)
T 3n9x_A 178 TINSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSH 252 (432)
T ss_dssp EC-------------------------------CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHTTCTTT
T ss_pred cccccccccccccccccccccccccchhccccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHHHhccccc
Confidence 76443211 12445799999999986 5567999999999999999999854443
No 226
>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*
Probab=100.00 E-value=1.3e-37 Score=348.38 Aligned_cols=271 Identities=19% Similarity=0.232 Sum_probs=204.4
Q ss_pred CHHHHHHHhhccccceEEeeeceEEEEEEEecCCceEEEEEecccCcc-----------cHHHHHHHHHHHhcCCCCCcc
Q 002278 607 TFDDIMRSTENLSEKYIVGYGASSTVYKCALKNSRPIAVKKLYNQYPH-----------NLREFETELETIGSIRHRNIV 675 (943)
Q Consensus 607 ~~~~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~-----------~~~~~~~E~~~l~~l~h~niv 675 (943)
..+++....++|+..+.||+|+||.||+|.+..++.||||++...... ..+.+.+|+++++.++||||+
T Consensus 13 ~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv 92 (362)
T 3pg1_A 13 LIAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNIL 92 (362)
T ss_dssp HHHHHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBC
T ss_pred HHHHHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCcc
Confidence 356677788999999999999999999999888999999998653321 136789999999999999999
Q ss_pred eeeeEEecC-----CcceEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEE
Q 002278 676 SLHGYALSP-----YGNLLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNIL 750 (943)
Q Consensus 676 ~l~~~~~~~-----~~~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nil 750 (943)
++++++... ...++||||+. |+|.+++.. ....+++..+..++.|++.||+|||+. +|+||||||+||+
T Consensus 93 ~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~--~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~NIl 166 (362)
T 3pg1_A 93 GLRDIFVHFEEPAMHKLYLVTELMR-TDLAQVIHD--QRIVISPQHIQYFMYHILLGLHVLHEA---GVVHRDLHPGNIL 166 (362)
T ss_dssp CCSEEEEECCTTTCCEEEEEEECCS-EEHHHHHHC--TTSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEE
T ss_pred ceeeeEEeccCCCcceEEEEEccCC-CCHHHHHHh--cccCCCHHHHHHHHHHHHHHHHHHHHC---cCEecCCChHHEE
Confidence 999998543 34699999997 688888763 344689999999999999999999999 9999999999999
Q ss_pred ECCCCceeecccccccccCCCCCceeeeEecccceeCcccccc-CCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHH
Q 002278 751 IDENFDAHLSDFGIARCIPTAMPHASTFVLGTIGYIDPEYAHT-SRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLI 829 (943)
Q Consensus 751 l~~~~~~kl~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~ 829 (943)
++.++.+||+|||+++...... ......||+.|+|||++.+ ..++.++||||+||++|+|++|+.||.+........
T Consensus 167 ~~~~~~~kl~Dfg~~~~~~~~~--~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~ 244 (362)
T 3pg1_A 167 LADNNDITICDFNLAREDTADA--NKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGSTFYNQLN 244 (362)
T ss_dssp ECTTCCEEECCTTC-----------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHH
T ss_pred EcCCCCEEEEecCccccccccc--ccceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCCCCCCCCHHHHHH
Confidence 9999999999999998554332 2234568999999999877 679999999999999999999999998776554443
Q ss_pred HHhcccccccc-------------ccC---cccccCc---cCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 002278 830 MSKADDNTVME-------------AVD---PEVSVTC---VDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLV 885 (943)
Q Consensus 830 ~~~~~~~~~~~-------------~~~---~~~~~~~---~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~ 885 (943)
......+.... ... ....... ........+.+++..|++.||++|||+.|+++|-+
T Consensus 245 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~ 319 (362)
T 3pg1_A 245 KIVEVVGTPKIEDVVMFSSPSARDYLRNSLSNVPARAWTAVVPTADPVALDLIAKMLEFNPQRRISTEQALRHPY 319 (362)
T ss_dssp HHHHHHCCCCHHHHHHTSCHHHHHHTTTCCCCCCCCCHHHHSTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTSGG
T ss_pred HHHHHcCCCChHHhhhccchhhhHHHHhhcccCChhhHHhhCCCCCHHHHHHHHHHhcCChhhCCCHHHHHcCch
Confidence 33221111000 000 0000000 00011245779999999999999999999999865
No 227
>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=6.3e-38 Score=356.16 Aligned_cols=267 Identities=22% Similarity=0.290 Sum_probs=187.5
Q ss_pred hcccc-ceEEeeeceEEEEEEEec---CCceEEEEEecccCcccHHHHHHHHHHHhcCCCCCcceeeeEEec--CCcceE
Q 002278 616 ENLSE-KYIVGYGASSTVYKCALK---NSRPIAVKKLYNQYPHNLREFETELETIGSIRHRNIVSLHGYALS--PYGNLL 689 (943)
Q Consensus 616 ~~~~~-~~~lG~G~~g~Vy~~~~~---~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~--~~~~~l 689 (943)
+.|.. .++||+|+||+||+|+++ +++.||+|++.... ....+.+|+++++.++|||||++++++.. ....++
T Consensus 20 ~~y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~l 97 (405)
T 3rgf_A 20 DLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTG--ISMSACREIALLRELKHPNVISLQKVFLSHADRKVWL 97 (405)
T ss_dssp HHEECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSSS--CCHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTEEEE
T ss_pred hhhhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCC--CCHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCeEEE
Confidence 44655 457999999999999976 47889999986543 23578899999999999999999999954 667899
Q ss_pred EEEEccCCChhhhccCC------CCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEE----CCCCceee
Q 002278 690 FYDYMVNGSLWDLLHGP------SKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILI----DENFDAHL 759 (943)
Q Consensus 690 v~e~~~~g~L~~~l~~~------~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill----~~~~~~kl 759 (943)
||||+. |+|.+++... .....+++..++.++.|++.||+|||+. +|+||||||+||++ +.++.+||
T Consensus 98 v~e~~~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~kl 173 (405)
T 3rgf_A 98 LFDYAE-HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHAN---WVLHRDLKPANILVMGEGPERGRVKI 173 (405)
T ss_dssp EEECCS-EEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECCSSTTTTCEEE
T ss_pred EEeCCC-CCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHhC---CEeCCCcCHHHeEEecCCCCCCcEEE
Confidence 999986 5787776421 1223589999999999999999999999 99999999999999 67889999
Q ss_pred cccccccccCCCCC--ceeeeEecccceeCccccccC-CCCCcchhhhHHHHHHHHHhCCCCCCCCcc---------HHH
Q 002278 760 SDFGIARCIPTAMP--HASTFVLGTIGYIDPEYAHTS-RLNEKSDVYSFGIVLLEILTGKKAVDNESN---------LHQ 827 (943)
Q Consensus 760 ~DFGla~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwSlGvil~elltG~~p~~~~~~---------~~~ 827 (943)
+|||+|+....... .......||+.|+|||++.+. .++.++||||+||++|||++|+.||.+... ...
T Consensus 174 ~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~~~~~~~ 253 (405)
T 3rgf_A 174 ADMGFARLFNSPLKPLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQ 253 (405)
T ss_dssp CCTTCCC----------------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTTCCCC------CCCCHHH
T ss_pred EECCCceecCCCCcccccCCCceecCcccCchhhcCCCcccchhhhHHHHHHHHHHHhCCCCCCCccccccccccchHHH
Confidence 99999987654321 223345699999999998874 589999999999999999999999975432 122
Q ss_pred HHHHhccccccccccCcccccC-----------------ccCH--------HHHHHHHHHHHHccCCCCCCCCCHHHHHH
Q 002278 828 LIMSKADDNTVMEAVDPEVSVT-----------------CVDL--------SAVRKTFQLALLCTKRYPSERPTMQEVAR 882 (943)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~--------~~~~~l~~l~~~cl~~dP~~RPt~~el~~ 882 (943)
+..+....+......++.+... .... .....+.+++..||+.||++|||+.|+++
T Consensus 254 l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ll~~~L~~dP~~R~ta~e~L~ 333 (405)
T 3rgf_A 254 LDRIFNVMGFPADKDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPIKRITSEQAMQ 333 (405)
T ss_dssp HHHHHHHHCCCCTTTCGGGGGSTTHHHHHHHCCGGGGTTCCHHHHHHTTTCCTTSHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred HHHHHHhhCCCChhhcchhhcCcchhhhhhhccccCCCcchhhhhHhhcCCCCCHHHHHHHHHHccCCcccCCCHHHHhc
Confidence 2222211111111111111000 0000 00235678999999999999999999999
Q ss_pred HHhhcC
Q 002278 883 VLVSLL 888 (943)
Q Consensus 883 ~L~~~~ 888 (943)
|-+-..
T Consensus 334 hp~f~~ 339 (405)
T 3rgf_A 334 DPYFLE 339 (405)
T ss_dssp SGGGTS
T ss_pred Chhhcc
Confidence 977543
No 228
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*
Probab=100.00 E-value=3.4e-38 Score=343.74 Aligned_cols=255 Identities=21% Similarity=0.282 Sum_probs=204.3
Q ss_pred HhhccccceEEeeeceEEEEEEEec-CCceEEEEEecccCcccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEEEE
Q 002278 614 STENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYPHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLFYD 692 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 692 (943)
..++|+..+.||+|+||.||+|.++ +++.||+|++........+.+.+|+++++.++||||+++++++..++..++|||
T Consensus 17 ~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 96 (302)
T 2j7t_A 17 PNEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMIE 96 (302)
T ss_dssp GGGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEEEE
T ss_pred CccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEEEE
Confidence 4578999999999999999999987 478899999877666777889999999999999999999999999999999999
Q ss_pred EccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccCCCC
Q 002278 693 YMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIPTAM 772 (943)
Q Consensus 693 ~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~~~~ 772 (943)
|+++++|.+++.. ....+++..+..++.|++.||+|||+. +++||||||+||+++.++.+||+|||++.......
T Consensus 97 ~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~ 171 (302)
T 2j7t_A 97 FCPGGAVDAIMLE--LDRGLTEPQIQVVCRQMLEALNFLHSK---RIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKTL 171 (302)
T ss_dssp CCTTEEHHHHHHH--HTSCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTSCEEECCCHHHHHHHHHH
T ss_pred eCCCCcHHHHHHh--hccCCCHHHHHHHHHHHHHHHHHHhcC---CcccCCCCHHHEEECCCCCEEEEECCCCccccccc
Confidence 9999999998853 234689999999999999999999999 99999999999999999999999999986432111
Q ss_pred CceeeeEecccceeCcccc-----ccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCcccc
Q 002278 773 PHASTFVLGTIGYIDPEYA-----HTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPEVS 847 (943)
Q Consensus 773 ~~~~~~~~gt~~y~aPE~~-----~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 847 (943)
.......||+.|+|||++ .+..++.++||||||+++|||++|+.||................... ......
T Consensus 172 -~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~-- 247 (302)
T 2j7t_A 172 -QKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPMRVLLKIAKSDPPT-LLTPSK-- 247 (302)
T ss_dssp -HC-----CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCC-CSSGGG--
T ss_pred -cccccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCccCCHHHHHHHHhccCCcc-cCCccc--
Confidence 111234589999999988 46678999999999999999999999998766554433332222111 000111
Q ss_pred cCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 002278 848 VTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVL 884 (943)
Q Consensus 848 ~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L 884 (943)
....+.+++..||+.||++|||+.++++|-
T Consensus 248 -------~~~~l~~li~~~l~~dp~~Rps~~~ll~h~ 277 (302)
T 2j7t_A 248 -------WSVEFRDFLKIALDKNPETRPSAAQLLEHP 277 (302)
T ss_dssp -------SCHHHHHHHHHHSCSCTTTSCCHHHHTTST
T ss_pred -------cCHHHHHHHHHHcccChhhCCCHHHHhcCh
Confidence 124677899999999999999999998864
No 229
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A
Probab=100.00 E-value=5.8e-39 Score=360.99 Aligned_cols=244 Identities=14% Similarity=0.191 Sum_probs=190.1
Q ss_pred hhccccceEEeeeceEEEEEEEec-CCceEEEEEeccc---CcccHHHHHHHH---HHHhcCCCCCcceee-------eE
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQ---YPHNLREFETEL---ETIGSIRHRNIVSLH-------GY 680 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~---~~~~~~~~~~E~---~~l~~l~h~niv~l~-------~~ 680 (943)
.++|...+.||+|+||+||+|+++ +++.||||++... .....+.+.+|+ +.++.++|||||+++ ++
T Consensus 72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~ 151 (377)
T 3byv_A 72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL 151 (377)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEE
T ss_pred CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhh
Confidence 468899999999999999999975 5899999998643 334567889999 455566899999998 66
Q ss_pred EecCCc-----------------ceEEEEEccCCChhhhccCCC----CCccCCHHHHHHHHHHHHHHHHHhhhCCCCCe
Q 002278 681 ALSPYG-----------------NLLFYDYMVNGSLWDLLHGPS----KKVKLDWETRLKIAVGAAQGLAYLHHDCNPRI 739 (943)
Q Consensus 681 ~~~~~~-----------------~~lv~e~~~~g~L~~~l~~~~----~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~i 739 (943)
+.+++. .++||||+ +|+|.+++.... ....+++..++.++.||+.||+|||++ +|
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~i 227 (377)
T 3byv_A 152 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHY---GL 227 (377)
T ss_dssp EECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHT---TE
T ss_pred hhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHhC---Ce
Confidence 665532 78999999 689999986311 112344588889999999999999999 99
Q ss_pred EecCCCCccEEECCCCceeecccccccccCCCCCceeeeEecccceeCccccccC-----------CCCCcchhhhHHHH
Q 002278 740 IHRDVKSSNILIDENFDAHLSDFGIARCIPTAMPHASTFVLGTIGYIDPEYAHTS-----------RLNEKSDVYSFGIV 808 (943)
Q Consensus 740 vH~Dlkp~Nill~~~~~~kl~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-----------~~~~~~DvwSlGvi 808 (943)
+||||||+|||++.++.+||+|||+|+.... ......| +.|+|||++.+. .++.++|||||||+
T Consensus 228 vHrDikp~NIll~~~~~~kL~DFG~a~~~~~----~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DvwSlG~i 302 (377)
T 3byv_A 228 VHTYLRPVDIVLDQRGGVFLTGFEHLVRDGA----RVVSSVS-RGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLV 302 (377)
T ss_dssp ECSCCCGGGEEECTTCCEEECCGGGCEETTC----EEECCCC-TTCCCHHHHHHHTSTHHHHCCEEECCHHHHHHHHHHH
T ss_pred ecCCCCHHHEEEcCCCCEEEEechhheecCC----cccCCCC-cCccChhhhcccccccccccccccCChhhhHHHHHHH
Confidence 9999999999999999999999999986432 2334557 999999999887 89999999999999
Q ss_pred HHHHHhCCCCCCCCccHHHHHHHhccccccccccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 002278 809 LLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVL 884 (943)
Q Consensus 809 l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L 884 (943)
+|||+||+.||.+....... ..... ..+.+ ...+.+++..||+.||++|||+.+++++-
T Consensus 303 l~elltg~~Pf~~~~~~~~~-------~~~~~-~~~~~---------~~~~~~li~~~L~~dp~~Rpt~~e~l~hp 361 (377)
T 3byv_A 303 IYWIWCADLPITKDAALGGS-------EWIFR-SCKNI---------PQPVRALLEGFLRYPKEDRLLPLQAMETP 361 (377)
T ss_dssp HHHHHHSSCCC------CCS-------GGGGS-SCCCC---------CHHHHHHHHHHTCSSGGGCCCHHHHHTSH
T ss_pred HHHHHHCCCCCcccccccch-------hhhhh-hccCC---------CHHHHHHHHHHcCCCchhCCCHHHHhhCh
Confidence 99999999999754321100 00000 01111 24677899999999999999999999864
No 230
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.1e-38 Score=351.17 Aligned_cols=257 Identities=23% Similarity=0.264 Sum_probs=189.3
Q ss_pred hhccccceEEeeeceEEEEEEEec-CCceEEEEEecccCcccHHHHHHHHHHHhcCC-CCCcceeeeEEec--------C
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYPHNLREFETELETIGSIR-HRNIVSLHGYALS--------P 684 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~--------~ 684 (943)
..+|+..+.||+|+||.||+|.+. +++.||+|++........+.+.+|+.+++++. ||||+++++++.. .
T Consensus 27 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~ 106 (337)
T 3ll6_A 27 ELRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTGQ 106 (337)
T ss_dssp TEEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTSS
T ss_pred CceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhccccccccccccccCC
Confidence 458999999999999999999975 68899999987666666678899999999996 9999999999942 3
Q ss_pred CcceEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCC--eEecCCCCccEEECCCCceeeccc
Q 002278 685 YGNLLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPR--IIHRDVKSSNILIDENFDAHLSDF 762 (943)
Q Consensus 685 ~~~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~--ivH~Dlkp~Nill~~~~~~kl~DF 762 (943)
...++||||+. |+|.+++........+++.+++.++.|++.||+|||+. + |+||||||+||+++.++.+||+||
T Consensus 107 ~~~~lv~e~~~-g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~---~~~ivH~Dikp~NIl~~~~~~~kl~Df 182 (337)
T 3ll6_A 107 AEFLLLTELCK-GQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHRQ---KPPIIHRDLKVENLLLSNQGTIKLCDF 182 (337)
T ss_dssp EEEEEEEECCS-EEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHTS---SSCCBCCCCCGGGCEECTTSCEEBCCC
T ss_pred ceEEEEEEecC-CCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhC---CCCEEEccCCcccEEECCCCCEEEecC
Confidence 34689999995 79989886433345699999999999999999999998 8 999999999999999999999999
Q ss_pred ccccccCCCCCc-----------eeeeEecccceeCcccc---ccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHH
Q 002278 763 GIARCIPTAMPH-----------ASTFVLGTIGYIDPEYA---HTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQL 828 (943)
Q Consensus 763 Gla~~~~~~~~~-----------~~~~~~gt~~y~aPE~~---~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~ 828 (943)
|+++........ ......||+.|+|||++ .+..++.++|||||||++|||+||+.||.........
T Consensus 183 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~~~~ 262 (337)
T 3ll6_A 183 GSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGAKLRIV 262 (337)
T ss_dssp TTCBCCSSCC-------------------------------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC---------
T ss_pred ccceeccccCcccccccccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCcchhHHHhh
Confidence 999876543221 11134589999999998 5667889999999999999999999999764432211
Q ss_pred HHHhccccccccccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCCC
Q 002278 829 IMSKADDNTVMEAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLPA 890 (943)
Q Consensus 829 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~~ 890 (943)
.. .. ........ ...+.+++..||+.||++|||+.|++++|+.+...
T Consensus 263 ~~----~~--~~~~~~~~---------~~~~~~li~~~l~~~p~~Rps~~e~l~~l~~~~~~ 309 (337)
T 3ll6_A 263 NG----KY--SIPPHDTQ---------YTVFHSLIRAMLQVNPEERLSIAEVVHQLQEIAAA 309 (337)
T ss_dssp -------C--CCCTTCCS---------SGGGHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred cC----cc--cCCccccc---------chHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhc
Confidence 10 00 00000111 12356899999999999999999999999887654
No 231
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...
Probab=100.00 E-value=2.8e-38 Score=353.52 Aligned_cols=259 Identities=22% Similarity=0.329 Sum_probs=205.4
Q ss_pred hhccccceEEeeeceEEEEEEEec-CCceEEEEEecccC-cccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEEEE
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQY-PHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLFYD 692 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 692 (943)
.++|+..+.||+|+||+||+|.+. +++.||+|++.... ....+.+.+|+++++.++||||+++++++.+++..++|||
T Consensus 32 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e 111 (360)
T 3eqc_A 32 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICME 111 (360)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEEEC
T ss_pred cccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEEEE
Confidence 467999999999999999999987 57889999986543 3345678999999999999999999999999999999999
Q ss_pred EccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccCCCC
Q 002278 693 YMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIPTAM 772 (943)
Q Consensus 693 ~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~~~~ 772 (943)
|+++|+|.+++. ....+++..+..++.|++.||+|||+.+ +|+||||||+||+++.++.+||+|||+++.....
T Consensus 112 ~~~~~~L~~~l~---~~~~~~~~~~~~i~~~i~~~l~~lh~~~--~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~- 185 (360)
T 3eqc_A 112 HMDGGSLDQVLK---KAGRIPEQILGKVSIAVIKGLTYLREKH--KIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS- 185 (360)
T ss_dssp CCTTCBHHHHHH---HHSSCCHHHHHHHHHHHHHHHHHHHHHH--CCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHH-
T ss_pred CCCCCCHHHHHH---HcCCCCHHHHHHHHHHHHHHHHHHHHhC--CEEcCCccHHHEEECCCCCEEEEECCCCcccccc-
Confidence 999999999996 3456899999999999999999999831 7999999999999999999999999999765322
Q ss_pred CceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccc-ccc-------------
Q 002278 773 PHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADD-NTV------------- 838 (943)
Q Consensus 773 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~-~~~------------- 838 (943)
......||+.|+|||++.+..++.++|||||||++|||++|+.||................ ...
T Consensus 186 --~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (360)
T 3eqc_A 186 --MANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRP 263 (360)
T ss_dssp --C----CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSCCCHHHHHHHHC--------------------
T ss_pred --cccCCCCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcccccccCCCCCCCcccCCCc
Confidence 1223468999999999999999999999999999999999999998654332211110000 000
Q ss_pred ---------------------ccccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 002278 839 ---------------------MEAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLV 885 (943)
Q Consensus 839 ---------------------~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~ 885 (943)
.....+.... ......+.+++..||+.||++|||+.|+++|-+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~ 327 (360)
T 3eqc_A 264 LNKFGMDSRPPMAIFELLDYIVNEPPPKLPS----GVFSLEFQDFVNKCLIKNPAERADLKQLMVHAF 327 (360)
T ss_dssp ----------CCCHHHHHHHHHHSCCCCCCT----TTSCHHHHHHHHHHHCSSTTTSCCHHHHHTSHH
T ss_pred ccccccCCCCcccchhhhhHHhccCCCCCCc----ccccHHHHHHHHHHhhcChhhCCCHHHHhhChH
Confidence 0000011110 011246789999999999999999999998765
No 232
>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*
Probab=100.00 E-value=7.3e-38 Score=336.70 Aligned_cols=251 Identities=23% Similarity=0.360 Sum_probs=198.9
Q ss_pred hhccccceEEeeeceEEEEEEEecCCceEEEEEecccCcccHHHHHHHHHHHhcCCCCCcceeeeEEecC-CcceEEEEE
Q 002278 615 TENLSEKYIVGYGASSTVYKCALKNSRPIAVKKLYNQYPHNLREFETELETIGSIRHRNIVSLHGYALSP-YGNLLFYDY 693 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-~~~~lv~e~ 693 (943)
.++|+..+.||+|+||+||+|..+ ++.||+|.+... ...+.+.+|+++++.++||||+++++++.+. +..++||||
T Consensus 20 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~vavK~~~~~--~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~ 96 (278)
T 1byg_A 20 MKELKLLQTIGKGEFGDVMLGDYR-GNKVAVKCIKND--ATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTEY 96 (278)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEET-TEEEEEEECCCC--C--HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEECC
T ss_pred hhhceEEeEEecCCCceEEEEEEc-CCEEEEEEecch--hHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEEEEec
Confidence 578999999999999999999876 789999998654 3457889999999999999999999997655 468999999
Q ss_pred ccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccCCCCC
Q 002278 694 MVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIPTAMP 773 (943)
Q Consensus 694 ~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~~~~~ 773 (943)
+++|+|.+++... ....+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++......
T Consensus 97 ~~~~~L~~~l~~~-~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~- 171 (278)
T 1byg_A 97 MAKGSLVDYLRSR-GRSVLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQ- 171 (278)
T ss_dssp CTTEEHHHHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTSCEEECCCCC---------
T ss_pred CCCCCHHHHHHhc-ccccCCHHHHHHHHHHHHHHHHHHHhC---CccccCCCcceEEEeCCCcEEEeeccccccccccc-
Confidence 9999999998631 122388999999999999999999999 99999999999999999999999999998654321
Q ss_pred ceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHh-CCCCCCCCccHHHHHHHhccccccccccCcccccCccC
Q 002278 774 HASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILT-GKKAVDNESNLHQLIMSKADDNTVMEAVDPEVSVTCVD 852 (943)
Q Consensus 774 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 852 (943)
....+++.|+|||++.+..++.++||||||+++|||+| |+.||.............. .. .+....
T Consensus 172 ---~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~~~~~~~~~-~~------~~~~~~---- 237 (278)
T 1byg_A 172 ---DTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKDVVPRVEK-GY------KMDAPD---- 237 (278)
T ss_dssp -------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGGGHHHHHTT-TC------CCCCCT----
T ss_pred ---cCCCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHhc-CC------CCCCcc----
Confidence 22347899999999999999999999999999999998 9999986543322222111 11 111111
Q ss_pred HHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcC
Q 002278 853 LSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLL 888 (943)
Q Consensus 853 ~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~ 888 (943)
.....+.+++..||+.||++|||+.++++.|+.+.
T Consensus 238 -~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~i~ 272 (278)
T 1byg_A 238 -GCPPAVYEVMKNCWHLDAAMRPSFLQLREQLEHIK 272 (278)
T ss_dssp -TCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred -cCCHHHHHHHHHHhcCChhhCCCHHHHHHHHHHHH
Confidence 11246788999999999999999999999998764
No 233
>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
Probab=100.00 E-value=1e-37 Score=338.84 Aligned_cols=260 Identities=17% Similarity=0.187 Sum_probs=205.0
Q ss_pred hhccccceEEeeeceEEEEEEEe-cCCceEEEEEecccCcccHHHHHHHHHHHhcCCCCCcceeeeEE-ecCCcceEEEE
Q 002278 615 TENLSEKYIVGYGASSTVYKCAL-KNSRPIAVKKLYNQYPHNLREFETELETIGSIRHRNIVSLHGYA-LSPYGNLLFYD 692 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~-~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~-~~~~~~~lv~e 692 (943)
.++|+..+.||+|+||.||+|++ .+++.||+|++..... .+.+.+|+++++.++|++++..+.++ ......++|||
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~e 85 (296)
T 3uzp_A 8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVME 85 (296)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSS--CCHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEEE
T ss_pred ccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcc--hhHHHHHHHHHHHhhcCCCCCccccccCCCCceEEEEE
Confidence 56899999999999999999997 4688999998865432 24688999999999988877666665 55667799999
Q ss_pred EccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEE---CCCCceeecccccccccC
Q 002278 693 YMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILI---DENFDAHLSDFGIARCIP 769 (943)
Q Consensus 693 ~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill---~~~~~~kl~DFGla~~~~ 769 (943)
|+ +++|.+++.. ....+++..+..++.|++.||+|||++ +|+||||||+||++ +.++.+||+|||+++...
T Consensus 86 ~~-~~~L~~~~~~--~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~ 159 (296)
T 3uzp_A 86 LL-GPSLEDLFNF--CSRKFSLKTVLLLADQMISRIEYIHSK---NFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYR 159 (296)
T ss_dssp CC-CCBHHHHHHH--TTTCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECCGGGTTCEEECCCTTCEECB
T ss_pred ec-CCCHHHHHHh--hccCCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHeEEecCCCCCeEEEeeCCCccccc
Confidence 99 9999999863 234699999999999999999999999 99999999999999 488899999999998775
Q ss_pred CCCCc------eeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCcc---HHHHHHHhcccc-ccc
Q 002278 770 TAMPH------ASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESN---LHQLIMSKADDN-TVM 839 (943)
Q Consensus 770 ~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~---~~~~~~~~~~~~-~~~ 839 (943)
..... ......||+.|+|||++.+..++.++|||||||++|||++|+.||..... ............ ...
T Consensus 160 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~ 239 (296)
T 3uzp_A 160 DARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMSTPI 239 (296)
T ss_dssp CTTTCCBCCCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHSCH
T ss_pred ccccccccccccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchhhhhhhhhhcccccCCch
Confidence 44321 12345699999999999999999999999999999999999999975321 111111111000 001
Q ss_pred cccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCCCC
Q 002278 840 EAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLPAP 891 (943)
Q Consensus 840 ~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~~~ 891 (943)
....+.+ ...+.+++..||+.||++|||+.++++.|+.+....
T Consensus 240 ~~~~~~~---------~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~~ 282 (296)
T 3uzp_A 240 EVLCKGY---------PSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQ 282 (296)
T ss_dssp HHHTTTS---------CHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHhhC---------CHHHHHHHHHHHhcCcCcCCCHHHHHHHHHHHHHhc
Confidence 1111111 246789999999999999999999999998775443
No 234
>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*
Probab=100.00 E-value=2.4e-38 Score=341.60 Aligned_cols=252 Identities=22% Similarity=0.372 Sum_probs=205.5
Q ss_pred HhhccccceEEeeeceEEEEEEEec-CCceEEEEEecccCcccHHHHHHHHHHHhcCCCCCcceeeeEEec---------
Q 002278 614 STENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYPHNLREFETELETIGSIRHRNIVSLHGYALS--------- 683 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~--------- 683 (943)
...+|+..+.||+|+||.||+|.+. +++.||+|++.... +.+.+|+++++.++||||+++++++..
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~ 84 (284)
T 2a19_B 9 FGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN----EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSS 84 (284)
T ss_dssp HHHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS----GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC-----
T ss_pred hccccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc----HHHHHHHHHHHhCCCCCEEEEeeeEeccccCccccc
Confidence 4578999999999999999999986 68999999986543 456789999999999999999998854
Q ss_pred -------CCcceEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCc
Q 002278 684 -------PYGNLLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFD 756 (943)
Q Consensus 684 -------~~~~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~ 756 (943)
....++||||+++|+|.+++... ....+++..++.++.|++.||+|||+. +|+||||||+||+++.++.
T Consensus 85 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~ 160 (284)
T 2a19_B 85 KNSSRSKTKCLFIQMEFCDKGTLEQWIEKR-RGEKLDKVLALELFEQITKGVDYIHSK---KLINRDLKPSNIFLVDTKQ 160 (284)
T ss_dssp ----CCEEEEEEEEECCCCSCBHHHHHHHG-GGSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTE
T ss_pred ccccccCcceEEEEEeccCCCCHHHHHhhc-cCCCCCHHHHHHHHHHHHHHHHHHHhC---CeeeccCCHHHEEEcCCCC
Confidence 33478999999999999999632 234689999999999999999999999 9999999999999999999
Q ss_pred eeecccccccccCCCCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhcccc
Q 002278 757 AHLSDFGIARCIPTAMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDN 836 (943)
Q Consensus 757 ~kl~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~ 836 (943)
+||+|||+++....... .....|++.|+|||++.+..++.++||||||+++|||++|..|+........ ... ..
T Consensus 161 ~kl~Dfg~~~~~~~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~~---~~~-~~ 234 (284)
T 2a19_B 161 VKIGDFGLVTSLKNDGK--RTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFETSKFFT---DLR-DG 234 (284)
T ss_dssp EEECCCTTCEESSCCSC--CCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHHHHHHHH---HHH-TT
T ss_pred EEECcchhheecccccc--ccccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcchhHHHHHH---Hhh-cc
Confidence 99999999987754322 2234589999999999999999999999999999999999998853222111 111 11
Q ss_pred ccccccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCCCCC
Q 002278 837 TVMEAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLPAPP 892 (943)
Q Consensus 837 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~~~~ 892 (943)
.. .+.+ ...+.+++..||+.||++|||+.|++++++.+.....
T Consensus 235 ~~----~~~~---------~~~~~~li~~~l~~dp~~Rps~~e~l~~l~~~~~~~~ 277 (284)
T 2a19_B 235 II----SDIF---------DKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWKKSPE 277 (284)
T ss_dssp CC----CTTS---------CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHTC---
T ss_pred cc----cccC---------CHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhhCCC
Confidence 11 1111 1356789999999999999999999999998776543
No 235
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*
Probab=100.00 E-value=9.4e-38 Score=347.63 Aligned_cols=263 Identities=22% Similarity=0.299 Sum_probs=208.8
Q ss_pred hhccccceEEeeeceEEEEEEEecCCceEEEEEecccCcc-----------------cHHHHHHHHHHHhcCCCCCccee
Q 002278 615 TENLSEKYIVGYGASSTVYKCALKNSRPIAVKKLYNQYPH-----------------NLREFETELETIGSIRHRNIVSL 677 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~-----------------~~~~~~~E~~~l~~l~h~niv~l 677 (943)
.++|+..+.||+|+||.||+|.. +++.||+|++...... ..+.+.+|+++++.++||||+++
T Consensus 30 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~ 108 (348)
T 2pml_X 30 INDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTC 108 (348)
T ss_dssp ETTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCC
T ss_pred cCceEEEEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceE
Confidence 46899999999999999999999 8999999998643211 11789999999999999999999
Q ss_pred eeEEecCCcceEEEEEccCCChhhh------ccCCCCCccCCHHHHHHHHHHHHHHHHHhhh-CCCCCeEecCCCCccEE
Q 002278 678 HGYALSPYGNLLFYDYMVNGSLWDL------LHGPSKKVKLDWETRLKIAVGAAQGLAYLHH-DCNPRIIHRDVKSSNIL 750 (943)
Q Consensus 678 ~~~~~~~~~~~lv~e~~~~g~L~~~------l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~-~~~~~ivH~Dlkp~Nil 750 (943)
++++.+.+..++||||+++|+|.++ +... ....+++..+..++.|++.||+|||+ . +|+||||||+||+
T Consensus 109 ~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~-~~~~~~~~~~~~i~~qi~~~l~~lH~~~---~i~H~dl~p~Nil 184 (348)
T 2pml_X 109 EGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKN-YTCFIPIQVIKCIIKSVLNSFSYIHNEK---NICHRDVKPSNIL 184 (348)
T ss_dssp SEEEESSSEEEEEEECCTTCBSSEESSSEESSCSS-SCCCCCHHHHHHHHHHHHHHHHHHHHTS---CEECCCCCGGGEE
T ss_pred EEEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhc-cccCCCHHHHHHHHHHHHHHHHHHhccC---CEeecCCChHhEE
Confidence 9999999999999999999999998 5421 24679999999999999999999998 8 9999999999999
Q ss_pred ECCCCceeecccccccccCCCCCceeeeEecccceeCccccccC-CCCC-cchhhhHHHHHHHHHhCCCCCCCCccHHHH
Q 002278 751 IDENFDAHLSDFGIARCIPTAMPHASTFVLGTIGYIDPEYAHTS-RLNE-KSDVYSFGIVLLEILTGKKAVDNESNLHQL 828 (943)
Q Consensus 751 l~~~~~~kl~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~-~~DvwSlGvil~elltG~~p~~~~~~~~~~ 828 (943)
++.++.+||+|||.++..... ......|++.|+|||++.+. .++. ++|||||||++|||++|+.||.........
T Consensus 185 ~~~~~~~kl~dfg~~~~~~~~---~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~ 261 (348)
T 2pml_X 185 MDKNGRVKLSDFGESEYMVDK---KIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKISLVEL 261 (348)
T ss_dssp ECTTSCEEECCCTTCEECBTT---EECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSCCSSCSHHH
T ss_pred EcCCCcEEEeccccccccccc---cccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhCCCCCCCCCcHHHH
Confidence 999999999999999876443 23334689999999999887 6666 999999999999999999999877653333
Q ss_pred HHHhccc-cccccccCccccc------CccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 002278 829 IMSKADD-NTVMEAVDPEVSV------TCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLV 885 (943)
Q Consensus 829 ~~~~~~~-~~~~~~~~~~~~~------~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~ 885 (943)
....... ...+......... ..........+.+++..||+.||++|||+.|+++|-+
T Consensus 262 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~e~l~hp~ 325 (348)
T 2pml_X 262 FNNIRTKNIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDIDFLKLFLRKNPAERITSEDALKHEW 325 (348)
T ss_dssp HHHHTSCCCCCCCSSSSSTTTTCC--------CCCHHHHHHHHHHCCSSGGGSCCHHHHHTSGG
T ss_pred HHHHhccCcCCccchhhhhccccccccccchhhcCHHHHHHHHHHccCChhhCCCHHHHhcCcc
Confidence 3322222 1111110000000 0000112256789999999999999999999998754
No 236
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.7e-38 Score=353.84 Aligned_cols=264 Identities=17% Similarity=0.175 Sum_probs=205.7
Q ss_pred hhccccceEEeeeceEEEEEEEecC---------CceEEEEEecccCcccHHHHHHHHHHHhcCCCCCcce---------
Q 002278 615 TENLSEKYIVGYGASSTVYKCALKN---------SRPIAVKKLYNQYPHNLREFETELETIGSIRHRNIVS--------- 676 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~~---------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~--------- 676 (943)
.++|+..+.||+|+||.||+|++.. ++.||+|.+... +.+.+|++++++++||||++
T Consensus 41 ~~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~-----~~~~~E~~~l~~l~h~niv~~~~~~~~~~ 115 (352)
T 2jii_A 41 GRQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD-----GRLFNEQNFFQRAAKPLQVNKWKKLYSTP 115 (352)
T ss_dssp SCEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT-----STHHHHHHHHHHHCCHHHHHHHHHHTTCT
T ss_pred CCeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc-----chHHHHHHHHHHhcccchhhhhhhhccCC
Confidence 4689999999999999999999864 789999998654 46789999999999999887
Q ss_pred ------eeeEEec-CCcceEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccE
Q 002278 677 ------LHGYALS-PYGNLLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNI 749 (943)
Q Consensus 677 ------l~~~~~~-~~~~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Ni 749 (943)
+++++.. +...++||||+ +|+|.+++... ....+++.+++.++.|++.||+|||++ +|+||||||+||
T Consensus 116 ~~~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~-~~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dikp~NI 190 (352)
T 2jii_A 116 LLAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVS-PKHVLSERSVLQVACRLLDALEFLHEN---EYVHGNVTAENI 190 (352)
T ss_dssp TCSCCCCCEEEEETTTEEEEEEECC-CEEHHHHHHHS-GGGCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCCGGGE
T ss_pred ccCccchhhccccCCcEEEEEecCC-CcCHHHHHHhC-CcCCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCHHHE
Confidence 6777765 66789999999 99999999732 135799999999999999999999999 999999999999
Q ss_pred EECCCC--ceeecccccccccCCCCCc------eeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCC
Q 002278 750 LIDENF--DAHLSDFGIARCIPTAMPH------ASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDN 821 (943)
Q Consensus 750 ll~~~~--~~kl~DFGla~~~~~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~ 821 (943)
+++.++ .+||+|||+++.+...... ......||+.|+|||++.+..++.++|||||||++|||++|+.||..
T Consensus 191 l~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~ 270 (352)
T 2jii_A 191 FVDPEDQSQVTLAGYGFAFRYCPSGKHVAYVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYGFLPWTN 270 (352)
T ss_dssp EEETTEEEEEEECCGGGCBCSSGGGCCCCCCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGG
T ss_pred EEcCCCCceEEEecCcceeeccCCCccccccccccccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCccc
Confidence 999988 8999999999876432111 11233689999999999999999999999999999999999999986
Q ss_pred Cc-cHHHHHHHhcc-ccccccccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCCCCC
Q 002278 822 ES-NLHQLIMSKAD-DNTVMEAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLPAPP 892 (943)
Q Consensus 822 ~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~~~~ 892 (943)
.. ........... .........+..... .....+.+++..||+.||++|||+.++++.|+.+.....
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~~~ 339 (352)
T 2jii_A 271 CLPNTEDIMKQKQKFVDKPGPFVGPCGHWI----RPSETLQKYLKVVMALTYEEKPPYAMLRNNLEALLQDLR 339 (352)
T ss_dssp GTTCHHHHHHHHHHHHHSCCCEECTTSCEE----CCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHHhccCChhhhhhhccccC----CCcHHHHHHHHHHHhCChhhCCCHHHHHHHHHHHHHhcC
Confidence 54 22222221111 001111110000000 012567899999999999999999999999988765443
No 237
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.6e-37 Score=340.36 Aligned_cols=255 Identities=23% Similarity=0.346 Sum_probs=205.7
Q ss_pred HhhccccceEEeeeceEEEEEEEec-CCceEEEEEecccCcccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEEEE
Q 002278 614 STENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYPHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLFYD 692 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e 692 (943)
..++|+..+.||+|+||.||+|.++ +++.||+|++.... ..+.+.+|+++++.++||||+++++++......++|||
T Consensus 27 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~--~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e 104 (314)
T 3com_A 27 PEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES--DLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWIVME 104 (314)
T ss_dssp ---CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTS--CCHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred chhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchH--HHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEee
Confidence 4678999999999999999999986 48899999986543 34778999999999999999999999999999999999
Q ss_pred EccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccCCCC
Q 002278 693 YMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIPTAM 772 (943)
Q Consensus 693 ~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~~~~ 772 (943)
|+++|+|.+++.. ....+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||++.......
T Consensus 105 ~~~~~~L~~~~~~--~~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~ 179 (314)
T 3com_A 105 YCGAGSVSDIIRL--RNKTLTEDEIATILQSTLKGLEYLHFM---RKIHRDIKAGNILLNTEGHAKLADFGVAGQLTDTM 179 (314)
T ss_dssp CCTTEEHHHHHHH--HTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCEECBTTB
T ss_pred cCCCCCHHHHHHh--cCCCCCHHHHHHHHHHHHHHHHHHHhC---CCcCCCcCHHHEEECCCCCEEEeecccchhhhhhc
Confidence 9999999999852 245689999999999999999999999 99999999999999999999999999998765432
Q ss_pred CceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCcccccCccC
Q 002278 773 PHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPEVSVTCVD 852 (943)
Q Consensus 773 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 852 (943)
.. .....|++.|+|||++.+..++.++||||||+++|+|++|+.||..................... ....
T Consensus 180 ~~-~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~------- 250 (314)
T 3com_A 180 AK-RNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIHPMRAIFMIPTNPPPTFR-KPEL------- 250 (314)
T ss_dssp SC-BCCCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSCCCCCS-SGGG-------
T ss_pred cc-cCccCCCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCCChHHHHHHHhcCCCcccC-Cccc-------
Confidence 22 22345899999999999999999999999999999999999999876654443332222111000 0011
Q ss_pred HHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhh
Q 002278 853 LSAVRKTFQLALLCTKRYPSERPTMQEVARVLVS 886 (943)
Q Consensus 853 ~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~ 886 (943)
....+.+++..||+.||++|||+.+++++-+-
T Consensus 251 --~~~~l~~li~~~l~~dp~~Rpt~~~ll~~~~~ 282 (314)
T 3com_A 251 --WSDNFTDFVKQCLVKSPEQRATATQLLQHPFV 282 (314)
T ss_dssp --SCHHHHHHHHHHTCSCTTTSCCHHHHTTSHHH
T ss_pred --CCHHHHHHHHHHccCChhhCcCHHHHHhCHHH
Confidence 12467789999999999999999999987653
No 238
>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A
Probab=100.00 E-value=9.5e-38 Score=339.14 Aligned_cols=261 Identities=18% Similarity=0.190 Sum_probs=201.1
Q ss_pred HHhhccccceEEeeeceEEEEEEEec-CCceEEEEEecccCcccHHHHHHHHHHHhcCCCCCcceeeeEE-ecCCcceEE
Q 002278 613 RSTENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYPHNLREFETELETIGSIRHRNIVSLHGYA-LSPYGNLLF 690 (943)
Q Consensus 613 ~~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~-~~~~~~~lv 690 (943)
...++|+..+.||+|+||+||+|++. +++.||+|++..... ...+.+|+++++.++|++++..+.++ ...+..++|
T Consensus 6 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv 83 (296)
T 4hgt_A 6 RVGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMV 83 (296)
T ss_dssp -----CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC-----CCCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEE
T ss_pred ccCCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeeccccc--chHHHHHHHHHHHhcCCCCCCeeeeecCCCCceEEE
Confidence 34578999999999999999999974 678999998654332 24578899999999988877766665 566677999
Q ss_pred EEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEE---CCCCceeecccccccc
Q 002278 691 YDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILI---DENFDAHLSDFGIARC 767 (943)
Q Consensus 691 ~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill---~~~~~~kl~DFGla~~ 767 (943)
|||+ +|+|.+++... ...+++..+..++.|++.||+|||++ +|+||||||+||++ +.++.+||+|||+++.
T Consensus 84 ~e~~-~~~L~~~~~~~--~~~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~~ 157 (296)
T 4hgt_A 84 MELL-GPSLEDLFNFC--SRKFSLKTVLLLADQMISRIEYIHSK---NFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKK 157 (296)
T ss_dssp EECC-CCBHHHHHHHT--TSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECCGGGTTCEEECCCTTCEE
T ss_pred EEcc-CCCHHHHHHHh--cCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeeeeccCCCCeEEEecCcccee
Confidence 9999 99999998632 34689999999999999999999999 99999999999999 7889999999999987
Q ss_pred cCCCCCc------eeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccH---HHHHHHhcccc-c
Q 002278 768 IPTAMPH------ASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNL---HQLIMSKADDN-T 837 (943)
Q Consensus 768 ~~~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~---~~~~~~~~~~~-~ 837 (943)
....... ......||+.|+|||++.+..++.++|||||||++|||++|+.||.+.... ........... .
T Consensus 158 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~ 237 (296)
T 4hgt_A 158 YRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERISEKKMST 237 (296)
T ss_dssp CBCTTTCCBCCCCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHHHHHHHS
T ss_pred ccCcccCccCCCCcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccchhhhhhhhhhhhcccccc
Confidence 7544321 123456999999999999999999999999999999999999999753221 11111110000 0
Q ss_pred cccccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCCC
Q 002278 838 VMEAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLPA 890 (943)
Q Consensus 838 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~~ 890 (943)
......+.+ ...+.+++..||+.||++|||+.++++.|+.+...
T Consensus 238 ~~~~~~~~~---------~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~~~~~ 281 (296)
T 4hgt_A 238 PIEVLCKGY---------PSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHR 281 (296)
T ss_dssp CHHHHTTTS---------CHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHH
T ss_pred hhhhhhccC---------CHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHH
Confidence 001111111 24678999999999999999999999999887654
No 239
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Probab=100.00 E-value=6.8e-38 Score=345.39 Aligned_cols=262 Identities=24% Similarity=0.347 Sum_probs=206.8
Q ss_pred HhhccccceEEeeeceEEEEEEEec------CCceEEEEEecccC-cccHHHHHHHHHHHhcCCCCCcceeeeEEecCCc
Q 002278 614 STENLSEKYIVGYGASSTVYKCALK------NSRPIAVKKLYNQY-PHNLREFETELETIGSIRHRNIVSLHGYALSPYG 686 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~------~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 686 (943)
..++|+..+.||+|+||.||+|.+. +++.||||++.... ......+.+|+.+++.++||||+++++++.+...
T Consensus 28 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~ 107 (327)
T 2yfx_A 28 PRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLP 107 (327)
T ss_dssp CGGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred ChhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCCC
Confidence 4578999999999999999999842 46789999986443 3445678899999999999999999999999999
Q ss_pred ceEEEEEccCCChhhhccCCC----CCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECC---CCceee
Q 002278 687 NLLFYDYMVNGSLWDLLHGPS----KKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDE---NFDAHL 759 (943)
Q Consensus 687 ~~lv~e~~~~g~L~~~l~~~~----~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~---~~~~kl 759 (943)
.++||||+++|+|.+++.... ....+++.+++.++.|++.||+|||+. +|+||||||+||+++. +..+||
T Consensus 108 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~---~i~H~dlkp~NIli~~~~~~~~~kl 184 (327)
T 2yfx_A 108 RFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGPGRVAKI 184 (327)
T ss_dssp CEEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTCCEEE
T ss_pred cEEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHhhC---CeecCcCCHhHEEEecCCCcceEEE
Confidence 999999999999999996432 124589999999999999999999999 9999999999999984 456999
Q ss_pred cccccccccCCCCC-ceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHh-CCCCCCCCccHHHHHHHhccccc
Q 002278 760 SDFGIARCIPTAMP-HASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILT-GKKAVDNESNLHQLIMSKADDNT 837 (943)
Q Consensus 760 ~DFGla~~~~~~~~-~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-G~~p~~~~~~~~~~~~~~~~~~~ 837 (943)
+|||+++....... .......||+.|+|||++.+..++.++|||||||++|||+| |+.||..................
T Consensus 185 ~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~~~~~~~~~~~ 264 (327)
T 2yfx_A 185 GDFGMARDIYRASYYRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSNQEVLEFVTSGGRM 264 (327)
T ss_dssp CCCHHHHHHHC------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHHHHHHHHHTTCCC
T ss_pred CccccccccccccccccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCcCHHHHHHHHhcCCCC
Confidence 99999986533221 11223347889999999999999999999999999999998 99999876543332222211110
Q ss_pred cccccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCCC
Q 002278 838 VMEAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLPA 890 (943)
Q Consensus 838 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~~ 890 (943)
...+. ....+.+++..||+.||++||++.+++++++.+...
T Consensus 265 ---~~~~~---------~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~~~~~ 305 (327)
T 2yfx_A 265 ---DPPKN---------CPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQD 305 (327)
T ss_dssp ---CCCTT---------CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred ---CCCCC---------CCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHhcC
Confidence 01111 124677899999999999999999999999977654
No 240
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*
Probab=100.00 E-value=1.1e-37 Score=371.50 Aligned_cols=248 Identities=23% Similarity=0.331 Sum_probs=200.2
Q ss_pred eEEeeeceEEEEEEEec---CCceEEEEEecccC--cccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEEEEEccC
Q 002278 622 YIVGYGASSTVYKCALK---NSRPIAVKKLYNQY--PHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLFYDYMVN 696 (943)
Q Consensus 622 ~~lG~G~~g~Vy~~~~~---~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~e~~~~ 696 (943)
+.||+|+||+||+|.+. .++.||||++.... ....+++.+|++++++++|||||++++++.. +..++||||+++
T Consensus 375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~-~~~~lv~E~~~~ 453 (635)
T 4fl3_A 375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA-ESWMLVMEMAEL 453 (635)
T ss_dssp EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEES-SSEEEEEECCTT
T ss_pred CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec-CCEEEEEEccCC
Confidence 47999999999999754 35789999987543 3446789999999999999999999999965 468899999999
Q ss_pred CChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccCCCCC--c
Q 002278 697 GSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIPTAMP--H 774 (943)
Q Consensus 697 g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~~~~~--~ 774 (943)
|+|.+++. ....+++.++..++.||+.||+|||++ +|+||||||+||+++.++.+||+|||+++.+..... .
T Consensus 454 g~L~~~l~---~~~~l~~~~~~~i~~qi~~~L~yLH~~---~iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~~~~~~~ 527 (635)
T 4fl3_A 454 GPLNKYLQ---QNRHVKDKNIIELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYK 527 (635)
T ss_dssp EEHHHHHH---HCTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCTTHHHHTTC------
T ss_pred CCHHHHHh---hCCCCCHHHHHHHHHHHHHHHHHHHHC---CEeCCCCChHhEEEeCCCCEEEEEcCCccccccCccccc
Confidence 99999996 345689999999999999999999999 999999999999999999999999999987754322 2
Q ss_pred eeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHh-CCCCCCCCccHHHHHHHhccccccccccCcccccCccCH
Q 002278 775 ASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILT-GKKAVDNESNLHQLIMSKADDNTVMEAVDPEVSVTCVDL 853 (943)
Q Consensus 775 ~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 853 (943)
......||+.|+|||++.+..++.++|||||||++|||++ |+.||.+............... +..+..
T Consensus 528 ~~~~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~~~~~~i~~~~~-------~~~p~~---- 596 (635)
T 4fl3_A 528 AQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGSEVTAMLEKGER-------MGCPAG---- 596 (635)
T ss_dssp -------CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHHHHHHHHHTTCC-------CCCCTT----
T ss_pred cccCCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHcCCC-------CCCCCC----
Confidence 2233447889999999999999999999999999999998 9999987665443332222211 111111
Q ss_pred HHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcC
Q 002278 854 SAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLL 888 (943)
Q Consensus 854 ~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~ 888 (943)
....+.+++..||+.||++||++.++++.|+.+.
T Consensus 597 -~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~ 630 (635)
T 4fl3_A 597 -CPREMYDLMNLCWTYDVENRPGFAAVELRLRNYY 630 (635)
T ss_dssp -CCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHH
Confidence 1256789999999999999999999999998653
No 241
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*
Probab=100.00 E-value=8.1e-38 Score=338.81 Aligned_cols=259 Identities=24% Similarity=0.393 Sum_probs=200.9
Q ss_pred hhccccceEEeeeceEEEEEEEecC--Cc--eEEEEEecccC---cccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcc
Q 002278 615 TENLSEKYIVGYGASSTVYKCALKN--SR--PIAVKKLYNQY---PHNLREFETELETIGSIRHRNIVSLHGYALSPYGN 687 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~~--~~--~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 687 (943)
.++|+..+.||+|+||+||+|++.. ++ .||+|++.... ....+.+.+|+++++.++||||+++++++..+. .
T Consensus 17 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-~ 95 (291)
T 1u46_A 17 EKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPP-M 95 (291)
T ss_dssp GGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-C
T ss_pred hhHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccCC-c
Confidence 4689999999999999999998642 33 58999886542 344567899999999999999999999998764 8
Q ss_pred eEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccc
Q 002278 688 LLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARC 767 (943)
Q Consensus 688 ~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~ 767 (943)
++||||+++|+|.+++.. ....+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++.
T Consensus 96 ~~v~e~~~~~~L~~~l~~--~~~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nili~~~~~~kl~Dfg~~~~ 170 (291)
T 1u46_A 96 KMVTELAPLGSLLDRLRK--HQGHFLLGTLSRYAVQVAEGMGYLESK---RFIHRDLAARNLLLATRDLVKIGDFGLMRA 170 (291)
T ss_dssp EEEEECCTTCBHHHHHHH--HGGGSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEEEETTEEEECCCTTCEE
T ss_pred eeeEecccCCCHHHHHHh--ccCCcCHHHHHHHHHHHHHHHHHHHhC---CcccCCCchheEEEcCCCCEEEcccccccc
Confidence 999999999999999863 235689999999999999999999999 999999999999999999999999999987
Q ss_pred cCCCCCce--eeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHh-CCCCCCCCccHHHHHHHhccccccccccCc
Q 002278 768 IPTAMPHA--STFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILT-GKKAVDNESNLHQLIMSKADDNTVMEAVDP 844 (943)
Q Consensus 768 ~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 844 (943)
........ .....+|+.|+|||++.+..++.++||||||+++|||++ |+.||.................... ..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~~~~~~~~~~~~~~~--~~~ 248 (291)
T 1u46_A 171 LPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNGSQILHKIDKEGERLP--RPE 248 (291)
T ss_dssp CCC-CCEEEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHTSCCCCC--CCT
T ss_pred ccccccchhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccCCHHHHHHHHHccCCCCC--CCc
Confidence 75443321 223457889999999998889999999999999999999 9999987655443333222211111 111
Q ss_pred ccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCCC
Q 002278 845 EVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLPA 890 (943)
Q Consensus 845 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~~ 890 (943)
. ....+.+++..||+.||++|||+.+++++|+...+.
T Consensus 249 ~---------~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~ 285 (291)
T 1u46_A 249 D---------CPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEAQPT 285 (291)
T ss_dssp T---------CCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC--
T ss_pred C---------cCHHHHHHHHHHccCCcccCcCHHHHHHHHHHhCcc
Confidence 1 125678999999999999999999999999987654
No 242
>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=1.4e-37 Score=350.48 Aligned_cols=263 Identities=19% Similarity=0.221 Sum_probs=201.0
Q ss_pred HHhhccccceEEeeeceEEEEEEEec-CCceEEEEEecccCcccHHHHHHHHHHHhcCCCCCcceeeeEEecC-------
Q 002278 613 RSTENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYPHNLREFETELETIGSIRHRNIVSLHGYALSP------- 684 (943)
Q Consensus 613 ~~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~------- 684 (943)
...++|+..+.||+|+||+||+|.+. +++.||+|++..... ...+|+++++.++|||||++++++...
T Consensus 4 ~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~~----~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~~ 79 (383)
T 3eb0_A 4 TSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPR----YKNRELDIMKVLDHVNIIKLVDYFYTTGDEEPKP 79 (383)
T ss_dssp --CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCTT----SCCHHHHHHTTCCCTTBCCEEEEEEEC-------
T ss_pred cccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCcc----hHHHHHHHHHHcCCCCccchhheeeecCcccccc
Confidence 45678999999999999999999975 689999999865422 234799999999999999999998543
Q ss_pred -------------------------------CcceEEEEEccCCChhhhccCC-CCCccCCHHHHHHHHHHHHHHHHHhh
Q 002278 685 -------------------------------YGNLLFYDYMVNGSLWDLLHGP-SKKVKLDWETRLKIAVGAAQGLAYLH 732 (943)
Q Consensus 685 -------------------------------~~~~lv~e~~~~g~L~~~l~~~-~~~~~l~~~~~~~i~~~i~~~l~~LH 732 (943)
...++||||++ |+|.+.+... .....+++..+..++.|++.||+|||
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH 158 (383)
T 3eb0_A 80 PQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFIH 158 (383)
T ss_dssp ------------------------------CCEEEEEECCCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 23789999997 5777666421 13456999999999999999999999
Q ss_pred hCCCCCeEecCCCCccEEEC-CCCceeecccccccccCCCCCceeeeEecccceeCccccccC-CCCCcchhhhHHHHHH
Q 002278 733 HDCNPRIIHRDVKSSNILID-ENFDAHLSDFGIARCIPTAMPHASTFVLGTIGYIDPEYAHTS-RLNEKSDVYSFGIVLL 810 (943)
Q Consensus 733 ~~~~~~ivH~Dlkp~Nill~-~~~~~kl~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwSlGvil~ 810 (943)
+. +|+||||||+||+++ .++.+||+|||+|+........ ....||+.|+|||++.+. .++.++||||+||++|
T Consensus 159 ~~---gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~~--~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ 233 (383)
T 3eb0_A 159 SL---GICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSEPS--VAYICSRFYRAPELMLGATEYTPSIDLWSIGCVFG 233 (383)
T ss_dssp TT---TEECSCCCGGGEEEETTTTEEEECCCTTCEECCTTSCC--CCCCCCSSCCCHHHHTTCSSCCTHHHHHHHHHHHH
T ss_pred HC---cCccCccCHHHEEEcCCCCcEEEEECCCCcccCCCCCC--cCcccCCCccCHHHhcCCCCCCcchhhhhHHHHHH
Confidence 99 999999999999998 6889999999999876543322 234589999999998875 4899999999999999
Q ss_pred HHHhCCCCCCCCccHHHHHHHhcccccccc------------ccCcccccCc----cCHHHHHHHHHHHHHccCCCCCCC
Q 002278 811 EILTGKKAVDNESNLHQLIMSKADDNTVME------------AVDPEVSVTC----VDLSAVRKTFQLALLCTKRYPSER 874 (943)
Q Consensus 811 elltG~~p~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~----~~~~~~~~l~~l~~~cl~~dP~~R 874 (943)
||++|+.||.+......+..+....+.... ...+...... ........+.+++.+||+.||++|
T Consensus 234 ell~g~~pf~~~~~~~~~~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R 313 (383)
T 3eb0_A 234 ELILGKPLFSGETSIDQLVRIIQIMGTPTKEQMIRMNPHYTEVRFPTLKAKDWRKILPEGTPSLAIDLLEQILRYEPDLR 313 (383)
T ss_dssp HHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHHHCTTC--CCCCCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGS
T ss_pred HHHhCCCCCCCCChHHHHHHHHHHhCCCCHHHHHHhCcccccccCCccCcccHHhhCCCCCCHHHHHHHHHHccCChhhC
Confidence 999999999988776665554432211100 0000000000 000112457899999999999999
Q ss_pred CCHHHHHHHHh
Q 002278 875 PTMQEVARVLV 885 (943)
Q Consensus 875 Pt~~el~~~L~ 885 (943)
||+.|+++|-+
T Consensus 314 ~t~~e~l~hp~ 324 (383)
T 3eb0_A 314 INPYEAMAHPF 324 (383)
T ss_dssp CCHHHHHTSGG
T ss_pred CCHHHHhcCHH
Confidence 99999998644
No 243
>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...
Probab=100.00 E-value=2.3e-37 Score=346.36 Aligned_cols=264 Identities=22% Similarity=0.272 Sum_probs=205.0
Q ss_pred hhccccceEEeeeceEEEEEEEec-CCceEEEEEecccC-cccHHHHHHHHHHHhcCCCCCcceeeeEEecC-----Ccc
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQY-PHNLREFETELETIGSIRHRNIVSLHGYALSP-----YGN 687 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-----~~~ 687 (943)
.++|+..+.||+|+||.||+|.+. +++.||+|++.... ....+.+.+|++++++++||||+++++++... ...
T Consensus 26 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 105 (364)
T 3qyz_A 26 GPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDV 105 (364)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCE
T ss_pred cccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccceE
Confidence 468999999999999999999976 57889999987543 23346788999999999999999999999765 357
Q ss_pred eEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccc
Q 002278 688 LLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARC 767 (943)
Q Consensus 688 ~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~ 767 (943)
++||||+. |+|.+++. ...+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++.
T Consensus 106 ~iv~e~~~-~~L~~~l~----~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~ 177 (364)
T 3qyz_A 106 YIVQDLME-TDLYKLLK----TQHLSNDHICYFLYQILRGLKYIHSA---NVLHRDLKPSNLLLNTTCDLKICDFGLARV 177 (364)
T ss_dssp EEEEECCS-EEHHHHHH----HCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEE
T ss_pred EEEEcccC-cCHHHHHH----hCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCChHhEEECCCCCEEEEeCcceEe
Confidence 99999996 58999885 34589999999999999999999999 999999999999999999999999999987
Q ss_pred cCCCCCce--eeeEecccceeCcccccc-CCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccc---
Q 002278 768 IPTAMPHA--STFVLGTIGYIDPEYAHT-SRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEA--- 841 (943)
Q Consensus 768 ~~~~~~~~--~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~--- 841 (943)
........ .....||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+..............+.....
T Consensus 178 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~ 257 (364)
T 3qyz_A 178 ADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLN 257 (364)
T ss_dssp CCGGGCBCCTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSCSSCCSSGGGHHHHHHHHHCSCCHHHHH
T ss_pred cCCCCCccccccccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCCCCCCCChHHHHHHHHHHhCCCCHHHHH
Confidence 64332211 233469999999998654 558999999999999999999999998766554443332211111000
Q ss_pred -------------cCcccccCc--cCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhh
Q 002278 842 -------------VDPEVSVTC--VDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVS 886 (943)
Q Consensus 842 -------------~~~~~~~~~--~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~ 886 (943)
....-.... ........+.+++..|++.||++|||+.|+++|-+-
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~~ 317 (364)
T 3qyz_A 258 CIINLKARNYLLSLPHKNKVPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAHPYL 317 (364)
T ss_dssp TCCCHHHHHHHHTSCCCCCCCHHHHCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTSGGG
T ss_pred HhhhhhHHHHHHhcCCccCCCHHHhCCCCCHHHHHHHHHHcCCChhhCCCHHHHhcCcch
Confidence 000000000 000112467899999999999999999999998653
No 244
>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}
Probab=100.00 E-value=3.3e-38 Score=353.11 Aligned_cols=272 Identities=18% Similarity=0.214 Sum_probs=196.2
Q ss_pred HHHHHHHhhccccceEEeeeceEEEEEEEec-CCceEEEEEecccCcccHHHHHHHHHHHhcCCCCCcceeeeEEecCCc
Q 002278 608 FDDIMRSTENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYPHNLREFETELETIGSIRHRNIVSLHGYALSPYG 686 (943)
Q Consensus 608 ~~~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 686 (943)
-.......++|+..+.||+|+||+||+|.++ +++.||||++.... .......+|++.++.++||||+++++++.....
T Consensus 15 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~ 93 (360)
T 3e3p_A 15 DERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDP-RFRNRELQIMQDLAVLHHPNIVQLQSYFYTLGE 93 (360)
T ss_dssp SHHHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECCT-TCCCHHHHHHHHHHHHCCTTBCCEEEEEEEECS
T ss_pred hhhchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCc-cccHHHHHHHHHHHhcCCCCcccHHHhhhcccc
Confidence 3456678899999999999999999999986 57899999886532 233456778888888999999999999965433
Q ss_pred -------ceEEEEEccCCChhhhcc-CCCCCccCCHHHHHHHHHHHHHHHHHhh--hCCCCCeEecCCCCccEEECC-CC
Q 002278 687 -------NLLFYDYMVNGSLWDLLH-GPSKKVKLDWETRLKIAVGAAQGLAYLH--HDCNPRIIHRDVKSSNILIDE-NF 755 (943)
Q Consensus 687 -------~~lv~e~~~~g~L~~~l~-~~~~~~~l~~~~~~~i~~~i~~~l~~LH--~~~~~~ivH~Dlkp~Nill~~-~~ 755 (943)
.++||||++++ +.+.+. .......+++..+..++.|++.||+||| +. +|+||||||+||+++. ++
T Consensus 94 ~~~~~~~~~lv~e~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~---~ivH~Dlkp~NIll~~~~~ 169 (360)
T 3e3p_A 94 RDRRDIYLNVVMEYVPDT-LHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHLPSV---NVCHRDIKPHNVLVNEADG 169 (360)
T ss_dssp SCTTCEEEEEEEECCSCB-HHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHTSTTT---CCBCSCCCGGGEEEETTTT
T ss_pred ccccceeEEEEeeccccc-HHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhCCCC---CeecCcCCHHHEEEeCCCC
Confidence 68999999764 443332 1124456899999999999999999999 77 9999999999999996 89
Q ss_pred ceeecccccccccCCCCCceeeeEecccceeCccccccCC-CCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhcc
Q 002278 756 DAHLSDFGIARCIPTAMPHASTFVLGTIGYIDPEYAHTSR-LNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKAD 834 (943)
Q Consensus 756 ~~kl~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~ 834 (943)
.+||+|||+++........ ....||+.|+|||++.+.. ++.++|||||||++|||++|+.||.+.............
T Consensus 170 ~~kl~Dfg~a~~~~~~~~~--~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~~~~~~~~~~ 247 (360)
T 3e3p_A 170 TLKLCDFGSAKKLSPSEPN--VAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDNSAGQLHEIVRV 247 (360)
T ss_dssp EEEECCCTTCBCCCTTSCC--CSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHH
T ss_pred cEEEeeCCCceecCCCCCc--ccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcCCCChHHHHHHHHHH
Confidence 9999999999877544322 2345899999999987654 899999999999999999999999877665544443322
Q ss_pred ccccccc----cCccc-----------c----cCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhh
Q 002278 835 DNTVMEA----VDPEV-----------S----VTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVS 886 (943)
Q Consensus 835 ~~~~~~~----~~~~~-----------~----~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~ 886 (943)
.+..... ..+.. . ...........+.+++..||+.||++|||+.|+++|-+-
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~f 318 (360)
T 3e3p_A 248 LGCPSREVLRKLNPSHTDVDLYNSKGIPWSNVFSDHSLKDAKEAYDLLSALLQYLPEERMKPYEALCHPYF 318 (360)
T ss_dssp HCCCCHHHHHHHCTTCCCGGGGCCCCCCHHHHTTTCCCTTHHHHHHHHHHHTCSSGGGSCCHHHHTTSGGG
T ss_pred cCCCCHHHHHhcccchhhccccccccCCcccccchhhccccHHHHHHHHHHhccCccccCCHHHHhcCccc
Confidence 1111100 00000 0 000001124578899999999999999999999998653
No 245
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}
Probab=100.00 E-value=8.8e-38 Score=344.28 Aligned_cols=263 Identities=25% Similarity=0.399 Sum_probs=207.9
Q ss_pred HhhccccceEEeeeceEEEEEEEe-----cCCceEEEEEecccCcccHHHHHHHHHHHhcCCCCCcceeeeEEecCC--c
Q 002278 614 STENLSEKYIVGYGASSTVYKCAL-----KNSRPIAVKKLYNQYPHNLREFETELETIGSIRHRNIVSLHGYALSPY--G 686 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~-----~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~--~ 686 (943)
..++|+..+.||+|+||.||+|+. .+++.||+|++........+.+.+|+++++.++||||+++++++...+ .
T Consensus 39 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~ 118 (326)
T 2w1i_A 39 EERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRN 118 (326)
T ss_dssp CGGGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC----C
T ss_pred CHHHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCCCc
Confidence 356789999999999999999984 357899999998766666778999999999999999999999987654 6
Q ss_pred ceEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeeccccccc
Q 002278 687 NLLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIAR 766 (943)
Q Consensus 687 ~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~ 766 (943)
.++||||+++|+|.+++.. ....+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++
T Consensus 119 ~~lv~e~~~~~~L~~~l~~--~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dikp~NIli~~~~~~kL~Dfg~~~ 193 (326)
T 2w1i_A 119 LKLIMEYLPYGSLRDYLQK--HKERIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVENENRVKIGDFGLTK 193 (326)
T ss_dssp CEEEECCCTTCBHHHHHHH--STTSSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEEEETTEEEECCCTTCE
T ss_pred eEEEEECCCCCCHHHHHHh--cccCCCHHHHHHHHHHHHHHHHHHHhC---CEeccCCCcceEEEcCCCcEEEecCcchh
Confidence 7999999999999999963 234589999999999999999999999 99999999999999999999999999998
Q ss_pred ccCCCCCce--eeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccc-------
Q 002278 767 CIPTAMPHA--STFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNT------- 837 (943)
Q Consensus 767 ~~~~~~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~------- 837 (943)
......... .....++..|+|||++.+..++.++|||||||++|||+||+.||..... ...........
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 271 (326)
T 2w1i_A 194 VLPQDKEYYKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPA--EFMRMIGNDKQGQMIVFH 271 (326)
T ss_dssp ECCSSCSEEECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSHHH--HHHHHHCTTCCTHHHHHH
T ss_pred hccccccccccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCCHH--HHHHhhccccchhhhHHH
Confidence 775443221 1223467889999999998899999999999999999999999864311 11100000000
Q ss_pred ----cccccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcC
Q 002278 838 ----VMEAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLL 888 (943)
Q Consensus 838 ----~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~ 888 (943)
......+.... .....+.+++..||+.||++|||+.++++.|+.+.
T Consensus 272 ~~~~~~~~~~~~~~~-----~~~~~l~~li~~cl~~dP~~Rps~~el~~~L~~l~ 321 (326)
T 2w1i_A 272 LIELLKNNGRLPRPD-----GCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIR 321 (326)
T ss_dssp HHHHHHTTCCCCCCT-----TCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCCC-----cccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHH
Confidence 00000011111 11256789999999999999999999999998754
No 246
>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*
Probab=100.00 E-value=2.8e-37 Score=333.78 Aligned_cols=255 Identities=22% Similarity=0.323 Sum_probs=208.0
Q ss_pred HHhhccccceEEeeeceEEEEEEEec-CCceEEEEEecccC--cccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceE
Q 002278 613 RSTENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQY--PHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLL 689 (943)
Q Consensus 613 ~~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~l 689 (943)
...++|+..+.||+|+||.||+|..+ +++.||+|++.... ....+.+.+|++++++++||||+++++++.+....++
T Consensus 19 ~~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l 98 (287)
T 2wei_A 19 TFAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYI 98 (287)
T ss_dssp HHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEE
T ss_pred HHhhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeEEE
Confidence 34678999999999999999999986 68899999986432 3456789999999999999999999999999999999
Q ss_pred EEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCC---Cceeeccccccc
Q 002278 690 FYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDEN---FDAHLSDFGIAR 766 (943)
Q Consensus 690 v~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~---~~~kl~DFGla~ 766 (943)
||||+++++|.+++. ....+++.+++.++.|++.||+|||+. +|+||||||+||+++.+ +.+||+|||+++
T Consensus 99 v~e~~~~~~L~~~l~---~~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~ 172 (287)
T 2wei_A 99 VGELYTGGELFDEII---KRKRFSEHDAARIIKQVFSGITYMHKH---NIVHRDLKPENILLESKEKDCDIKIIDFGLST 172 (287)
T ss_dssp EECCCCSCBHHHHHH---HHSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTCCEEECSTTGGG
T ss_pred EEEccCCCCHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCChhhEEEecCCCcccEEEeccCcce
Confidence 999999999999886 345689999999999999999999999 99999999999999754 469999999998
Q ss_pred ccCCCCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCccc
Q 002278 767 CIPTAMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPEV 846 (943)
Q Consensus 767 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 846 (943)
........ ....|++.|+|||++.+. ++.++||||||+++|+|++|+.||.+......................+.+
T Consensus 173 ~~~~~~~~--~~~~~~~~y~aPE~~~~~-~~~~~Di~slG~~l~~l~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (287)
T 2wei_A 173 CFQQNTKM--KDRIGTAYYIAPEVLRGT-YDEKCDVWSAGVILYILLSGTPPFYGKNEYDILKRVETGKYAFDLPQWRTI 249 (287)
T ss_dssp TBCCCSSC--SCHHHHHTTCCHHHHTTC-CCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHCCCCCCSGGGTTS
T ss_pred eecCCCcc--ccccCcccccChHHhcCC-CCCchhhHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHcCCCCCCchhhhhc
Confidence 76543221 223589999999988764 899999999999999999999999876654433333222211111111111
Q ss_pred ccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 002278 847 SVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLV 885 (943)
Q Consensus 847 ~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~ 885 (943)
...+.+++..|++.||++|||+.+++++-+
T Consensus 250 ---------~~~~~~li~~~l~~dp~~Rps~~ell~hp~ 279 (287)
T 2wei_A 250 ---------SDDAKDLIRKMLTFHPSLRITATQCLEHPW 279 (287)
T ss_dssp ---------CHHHHHHHHHHTCSSGGGSCCHHHHHHSHH
T ss_pred ---------CHHHHHHHHHHcccChhhCcCHHHHhcCHH
Confidence 246778999999999999999999998643
No 247
>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*
Probab=100.00 E-value=1.4e-37 Score=342.09 Aligned_cols=253 Identities=22% Similarity=0.300 Sum_probs=197.6
Q ss_pred HhhccccceEEeeeceEEEEEEEec-CCceEEEEEecccCc--------ccHHHHHHHHHHHhcCCCCCcceeeeEEecC
Q 002278 614 STENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYP--------HNLREFETELETIGSIRHRNIVSLHGYALSP 684 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~--------~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~ 684 (943)
..++|...+.||+|+||.||+|.++ +++.||||.+..... .....+.+|+++++.++||||+++++++...
T Consensus 8 l~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~ 87 (322)
T 2ycf_A 8 LRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAE 87 (322)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESS
T ss_pred hhhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCC
Confidence 3468999999999999999999976 478899999864321 2234578999999999999999999998765
Q ss_pred CcceEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCc---eeecc
Q 002278 685 YGNLLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFD---AHLSD 761 (943)
Q Consensus 685 ~~~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~---~kl~D 761 (943)
. .++||||+++|+|.+++. ....+++..+..++.|++.||+|||++ +|+||||||+||+++.++. +||+|
T Consensus 88 ~-~~lv~e~~~~~~L~~~~~---~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~~~~~kl~D 160 (322)
T 2ycf_A 88 D-YYIVLELMEGGELFDKVV---GNKRLKEATCKLYFYQMLLAVQYLHEN---GIIHRDLKPENVLLSSQEEDCLIKITD 160 (322)
T ss_dssp S-EEEEEECCTTEETHHHHS---TTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSSSCCEEECC
T ss_pred c-eEEEEecCCCCcHHHHHh---ccCCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHEEEecCCCCCeEEEcc
Confidence 4 899999999999999886 345689999999999999999999999 9999999999999987654 99999
Q ss_pred cccccccCCCCCceeeeEecccceeCccccc---cCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHH-hccccc
Q 002278 762 FGIARCIPTAMPHASTFVLGTIGYIDPEYAH---TSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMS-KADDNT 837 (943)
Q Consensus 762 FGla~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~-~~~~~~ 837 (943)
||+++..... .......||+.|+|||++. ...++.++|||||||++|||++|+.||............ ......
T Consensus 161 fg~~~~~~~~--~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~ 238 (322)
T 2ycf_A 161 FGHSKILGET--SLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVSLKDQITSGKYN 238 (322)
T ss_dssp CTTCEECCCC--HHHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCSTTCSSCHHHHHHHTCCC
T ss_pred Cccceecccc--cccccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchHHHHHHHHHhCccc
Confidence 9999876432 1122345899999999874 467899999999999999999999999754322111111 111111
Q ss_pred cccccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 002278 838 VMEAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVL 884 (943)
Q Consensus 838 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L 884 (943)
......+.+ ...+.+++..||+.||++|||+.+++++-
T Consensus 239 ~~~~~~~~~---------~~~~~~li~~~l~~dP~~Rps~~~~l~h~ 276 (322)
T 2ycf_A 239 FIPEVWAEV---------SEKALDLVKKLLVVDPKARFTTEEALRHP 276 (322)
T ss_dssp CCHHHHTTS---------CHHHHHHHHHHSCSSTTTSCCHHHHHTSG
T ss_pred cCchhhhhc---------CHHHHHHHHHHcccCHhhCCCHHHHhhCc
Confidence 111111111 24677999999999999999999998764
No 248
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Probab=100.00 E-value=8.6e-38 Score=344.57 Aligned_cols=260 Identities=23% Similarity=0.333 Sum_probs=203.9
Q ss_pred HHHHHHhhccccceEEeeeceEEEEEEEec-CCceEEEEEecccCcccHHHHHHHHHHHhcC-CCCCcceeeeEEec---
Q 002278 609 DDIMRSTENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYPHNLREFETELETIGSI-RHRNIVSLHGYALS--- 683 (943)
Q Consensus 609 ~~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~--- 683 (943)
.++....++|+..+.||+|+||.||+|.+. +++.||+|++... ......+.+|+++++++ +||||+++++++..
T Consensus 17 ~~l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~-~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~ 95 (326)
T 2x7f_A 17 SALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVT-GDEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNP 95 (326)
T ss_dssp CCCCCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-SSTTHHHHHHHHHHHHHCCSTTBCCEEEEEEECC-
T ss_pred hhccCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecC-cccHHHHHHHHHHHHhccCCCCeeeeeeEEeeccC
Confidence 334446788999999999999999999975 6889999998643 33457889999999998 79999999999976
Q ss_pred ---CCcceEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeec
Q 002278 684 ---PYGNLLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLS 760 (943)
Q Consensus 684 ---~~~~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~ 760 (943)
....++||||+++|+|.+++... ....+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+
T Consensus 96 ~~~~~~~~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~~kl~ 171 (326)
T 2x7f_A 96 PGMDDQLWLVMEFCGAGSVTDLIKNT-KGNTLKEEWIAYICREILRGLSHLHQH---KVIHRDIKGQNVLLTENAEVKLV 171 (326)
T ss_dssp -CCCCEEEEEEECCTTEEHHHHHHHS-GGGCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTCCEEEC
T ss_pred ccccceEEEEEEcCCCCcHHHHHHhc-ccCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCcHHHEEEcCCCCEEEe
Confidence 45789999999999999998642 235689999999999999999999999 99999999999999999999999
Q ss_pred ccccccccCCCCCceeeeEecccceeCccccc-----cCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccc
Q 002278 761 DFGIARCIPTAMPHASTFVLGTIGYIDPEYAH-----TSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADD 835 (943)
Q Consensus 761 DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~ 835 (943)
|||++......... .....||+.|+|||++. +..++.++|||||||++|||++|+.||................
T Consensus 172 Dfg~~~~~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~ 250 (326)
T 2x7f_A 172 DFGVSAQLDRTVGR-RNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMRALFLIPRNP 250 (326)
T ss_dssp CCTTTC--------------CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTTTSCHHHHHHHHHHSC
T ss_pred eCcCceecCcCccc-cccccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCCCCcHHHHHHHhhcCc
Confidence 99999876433222 23346999999999987 5678999999999999999999999998766554443322211
Q ss_pred cccccccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 002278 836 NTVMEAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLV 885 (943)
Q Consensus 836 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~ 885 (943)
. .....+.+ ...+.+++..||+.||++||++.+++++-+
T Consensus 251 ~--~~~~~~~~---------~~~l~~li~~~l~~dp~~Rps~~~ll~hp~ 289 (326)
T 2x7f_A 251 A--PRLKSKKW---------SKKFQSFIESCLVKNHSQRPATEQLMKHPF 289 (326)
T ss_dssp C--CCCSCSCS---------CHHHHHHHHHHCCSSGGGSCCHHHHHTSHH
T ss_pred c--ccCCcccc---------CHHHHHHHHHHhccChhhCCCHHHHhhChH
Confidence 1 11111111 246778999999999999999999999755
No 249
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*
Probab=100.00 E-value=1.4e-37 Score=354.83 Aligned_cols=261 Identities=20% Similarity=0.208 Sum_probs=205.0
Q ss_pred hhccccceEEeeeceEEEEEEEec-CCceEEEEEecccCcccHHHHHHHHHHHhcC------CCCCcceeeeEEecCCcc
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYPHNLREFETELETIGSI------RHRNIVSLHGYALSPYGN 687 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l------~h~niv~l~~~~~~~~~~ 687 (943)
..+|+..+.||+|+||+||+|.+. +++.||||++... ......+.+|+++++.+ .|+||+++++++......
T Consensus 96 ~~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~ 174 (429)
T 3kvw_A 96 AYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNE-KRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHI 174 (429)
T ss_dssp TTTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETTEE
T ss_pred cCcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCc-cchHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCCeE
Confidence 457999999999999999999876 4789999998643 23345677788887766 578999999999999999
Q ss_pred eEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCc--eeecccccc
Q 002278 688 LLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFD--AHLSDFGIA 765 (943)
Q Consensus 688 ~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~--~kl~DFGla 765 (943)
++||||+. ++|.+++... ....+++..+..++.||+.||+|||+. +|+||||||+|||++.++. +||+|||+|
T Consensus 175 ~lv~e~~~-~~L~~~l~~~-~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlKp~NILl~~~~~~~vkL~DFG~a 249 (429)
T 3kvw_A 175 CMTFELLS-MNLYELIKKN-KFQGFSLPLVRKFAHSILQCLDALHKN---RIIHCDLKPENILLKQQGRSGIKVIDFGSS 249 (429)
T ss_dssp EEEECCCC-CBHHHHHHHT-TTCCCCHHHHHHHHHHHHHHHHHHHHH---TEECSCCSGGGEEESSTTSCCEEECCCTTC
T ss_pred EEEEeccC-CCHHHHHHhc-cCCCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEEccCCCcceEEeecccc
Confidence 99999995 6999988643 223589999999999999999999999 9999999999999999887 999999999
Q ss_pred cccCCCCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhcccccccccc---
Q 002278 766 RCIPTAMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAV--- 842 (943)
Q Consensus 766 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~--- 842 (943)
+...... ....||+.|+|||++.+..++.++|||||||++|||+||++||.+......+.......+......
T Consensus 250 ~~~~~~~----~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~pf~~~~~~~~l~~i~~~~~~p~~~~~~~ 325 (429)
T 3kvw_A 250 CYEHQRV----YTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPGEDEGDQLACMIELLGMPSQKLLDA 325 (429)
T ss_dssp EETTCCC----CSSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCCCCHHHHHT
T ss_pred eecCCcc----cccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHcCCCCHHHHHh
Confidence 7654332 234689999999999999999999999999999999999999988776555443332211111000
Q ss_pred ------------Ccc-----------------------c--ccCccCHH------HHHHHHHHHHHccCCCCCCCCCHHH
Q 002278 843 ------------DPE-----------------------V--SVTCVDLS------AVRKTFQLALLCTKRYPSERPTMQE 879 (943)
Q Consensus 843 ------------~~~-----------------------~--~~~~~~~~------~~~~l~~l~~~cl~~dP~~RPt~~e 879 (943)
.+. . ........ ....+.+++.+||+.||++|||+.|
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~dli~~~L~~dP~~Rpta~e 405 (429)
T 3kvw_A 326 SKRAKNFVSSKGYPRYCTVTTLSDGSVVLNGGRSRRGKLRGPPESREWGNALKGCDDPLFLDFLKQCLEWDPAVRMTPGQ 405 (429)
T ss_dssp BTTHHHHBCTTSCBTTSCEECCCC--CEECCEECTTCCEECSTTCSCHHHHTTTCCCHHHHHHHHHHTCSSTTTSCCHHH
T ss_pred hhhhhhccCCCCCcccccccccccccccccccccchhhccCCccchhhHhhccccchHHHHHHHHHHCCCChhhCCCHHH
Confidence 000 0 00000000 1246789999999999999999999
Q ss_pred HHHHHh
Q 002278 880 VARVLV 885 (943)
Q Consensus 880 l~~~L~ 885 (943)
+++|-+
T Consensus 406 ~L~Hpw 411 (429)
T 3kvw_A 406 ALRHPW 411 (429)
T ss_dssp HHTSTT
T ss_pred HhCChh
Confidence 999865
No 250
>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*
Probab=100.00 E-value=4.1e-38 Score=343.29 Aligned_cols=263 Identities=25% Similarity=0.398 Sum_probs=192.0
Q ss_pred HhhccccceEEeeeceEEEEEEEec-CCceEEEEEecccC-cccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEEE
Q 002278 614 STENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQY-PHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLFY 691 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 691 (943)
..++|+..+.||+|+||.||+|... +++.||||++.... ....+.+.+|+++++.++||||+++++++...+..++||
T Consensus 13 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~ 92 (303)
T 2vwi_A 13 NRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDELWLVM 92 (303)
T ss_dssp CCCCCEEEEECC---CCCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEEEEEESSSCEEEEE
T ss_pred chhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCcEEEe
Confidence 4678999999999999999999965 57899999886433 334567889999999999999999999999999999999
Q ss_pred EEccCCChhhhccC-----CCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeeccccccc
Q 002278 692 DYMVNGSLWDLLHG-----PSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIAR 766 (943)
Q Consensus 692 e~~~~g~L~~~l~~-----~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~ 766 (943)
||+++|+|.+++.. ......+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++
T Consensus 93 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~~~ 169 (303)
T 2vwi_A 93 KLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKN---GQIHRDVKAGNILLGEDGSVQIADFGVSA 169 (303)
T ss_dssp ECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTCCEEECCCHHHH
T ss_pred hhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHhC---CCCCCCCChhhEEEcCCCCEEEEeccchh
Confidence 99999999998852 11245689999999999999999999999 99999999999999999999999999998
Q ss_pred ccCCCCC----ceeeeEecccceeCcccccc-CCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccc
Q 002278 767 CIPTAMP----HASTFVLGTIGYIDPEYAHT-SRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEA 841 (943)
Q Consensus 767 ~~~~~~~----~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~ 841 (943)
....... .......||+.|+|||++.+ ..++.++|||||||++|||++|+.||......................
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~ 249 (303)
T 2vwi_A 170 FLATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPPMKVLMLTLQNDPPSLET 249 (303)
T ss_dssp HCC---------------CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTTSCGGGHHHHHHTSSCCCTTC
T ss_pred eeccCCCccchhhhcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCccCchhhHHHHHhccCCCcccc
Confidence 7643221 11233468999999999876 568999999999999999999999998766544443333222211110
Q ss_pred --cCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHH
Q 002278 842 --VDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVL 884 (943)
Q Consensus 842 --~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L 884 (943)
..+..... ....+.+++..||+.||++|||+.+++++-
T Consensus 250 ~~~~~~~~~~-----~~~~~~~li~~~l~~dp~~Rps~~~ll~h~ 289 (303)
T 2vwi_A 250 GVQDKEMLKK-----YGKSFRKMISLCLQKDPEKRPTAAELLRHK 289 (303)
T ss_dssp -----CCCCC-----CCHHHHHHHHHHCCSSGGGSCCHHHHHTST
T ss_pred ccccchhhhh-----hhHHHHHHHHHHccCChhhCcCHHHHhhCh
Confidence 01111111 124677899999999999999999999874
No 251
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=7.3e-37 Score=345.86 Aligned_cols=351 Identities=19% Similarity=0.152 Sum_probs=206.9
Q ss_pred cCCCCCCCCCCCCCC-cceeEecCCCCcEEEEEcCCCCCccccCCCcCCCCCCCEEEeeCCcccccCCCCccCCCCCcEE
Q 002278 13 VLLDWDDVHNSDFCS-WRGVFCDNSSLSVVSLNLSSLNLGGEISPSIGDLRNLQSIDFQGNKLTGQIPDEIGNCGSLVHI 91 (943)
Q Consensus 13 ~~~~w~~~~~~~~c~-w~gv~c~~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 91 (943)
.+++|.. +.+||. |.+..|.-...++ ............-..+.+++.|++++|.++...+..|..+++|++|
T Consensus 2 ~~~~~~~--~~~C~~~~~~~~c~~~~~~i-----~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L 74 (390)
T 3o6n_A 2 NVKPRQP--EYKCIDSNLQYDCVFYDVHI-----DMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELL 74 (390)
T ss_dssp -----CC--EECBCC------EEEESCEE-----CSSCCCCEESCSSGGGCCCSEEEEESCEESEECTHHHHHCCCCSEE
T ss_pred CcCCCCC--ccceehhhhhhccceeeeee-----ecccccccccccccccCCceEEEecCCchhhCChhHhcccccCcEE
Confidence 4788985 568885 4444443222221 2211111222233456889999999999984434447889999999
Q ss_pred eccCCCcCCccchhccccccceEEEecCcccccCCCcccCCCCCCcEEEEeccccccccchhccccccceeccccCCccC
Q 002278 92 ELSDNSLYGDIPFSISKLKQLEFLNLKNNQLTGPIPSTLTQIPNLKTLDLARNQLTGEIPRLIYWNEVLQYLGLRGNALT 171 (943)
Q Consensus 92 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~ 171 (943)
+|++|++++..+..|+.+++|++|+|++|++++..|..|.++++|++|+|++|+++...+..|..+++|++|+|++|+++
T Consensus 75 ~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~ 154 (390)
T 3o6n_A 75 NLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE 154 (390)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred ECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccC
Confidence 99999998766678999999999999999999888888889999999999999888555555677777777777777777
Q ss_pred CCCCcccccccccceeeccceecccccCCCCcCCCcccEEEeecccccCcCCCCCCcceEeEEEecCccccccCCccccc
Q 002278 172 GMLSPDMCQLTGLWYFDVRGNNLTGTIPDSIGNCTSFEILDISYNQITGEIPYNIGFLQVATLSLQGNKLTGKIPEVIGL 251 (943)
Q Consensus 172 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 251 (943)
++.+..+..+++|++|++++|++++. .+..+++|+.|++++|.+++. ..
T Consensus 155 ~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~----------------------------~~ 203 (390)
T 3o6n_A 155 RIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL----------------------------AI 203 (390)
T ss_dssp BCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE----------------------------EC
T ss_pred ccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccccc----------------------------CC
Confidence 77766677777777777777776643 245556666666666665421 11
Q ss_pred cCCCcEEecCCCCCCCCCCcccCCCCCcceEEecCCCCCCCCCCCcCCCCcCcEEEcccCccccccccccCCcccceEEE
Q 002278 252 MQALAVLDLSENELVGPIPPILGNLSYTGKLYLHGNKLTGPIPPELGNMSKLSYLQLQNNQLVGTIPAELGKLEQLFELN 331 (943)
Q Consensus 252 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 331 (943)
..+|+.|++++|.+... |.. ..++|+.|++++|.+++. ..+..+++|++|++++|.++
T Consensus 204 ~~~L~~L~l~~n~l~~~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~----------------- 261 (390)
T 3o6n_A 204 PIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELE----------------- 261 (390)
T ss_dssp CSSCSEEECCSSCCCEE-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC-----------------
T ss_pred CCcceEEECCCCeeeec-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCC-----------------
Confidence 23455555555555432 111 123444444444444432 23444444444444444444
Q ss_pred ccccccCCcCcccccCCCcCcEEEeeCCcccCcccccccccCccceeeccCCcCCCCCCCCCCCCCCccEEecCCCcCCC
Q 002278 332 LADNNLEGPIPHNISSCTALNQFNVHGNRLSGAIPSSFRNLGSLTYLNLSRNNFKGKVPTELGRIINLDTLDLSVNNFSG 411 (943)
Q Consensus 332 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 411 (943)
+..|..|..+++|+.|+|++|++++ +|..+..+++|+.|+|++|+++ .+|..+..+++|+.|++++|.|+.
T Consensus 262 -------~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~ 332 (390)
T 3o6n_A 262 -------KIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT 332 (390)
T ss_dssp -------EEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC
T ss_pred -------CcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccce
Confidence 4444444444444444444444442 2333444555555555555555 334444555555555555555553
Q ss_pred ccCCCcccccccceeecccccccc
Q 002278 412 SVPASIGDLEHLLTLNLSRNHLNG 435 (943)
Q Consensus 412 ~~~~~~~~l~~L~~L~Ls~N~l~~ 435 (943)
. + +..+++|+.|++++|+++.
T Consensus 333 ~-~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 333 L-K--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp C-C--CCTTCCCSEEECCSSCEEH
T ss_pred e-C--chhhccCCEEEcCCCCccc
Confidence 2 2 4555666666666666653
No 252
>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*
Probab=100.00 E-value=2.3e-37 Score=345.22 Aligned_cols=264 Identities=22% Similarity=0.261 Sum_probs=203.4
Q ss_pred hhccccceEEeeeceEEEEEEEec-CCceEEEEEecccC-cccHHHHHHHHHHHhcCCCCCcceeeeEEecC-----Ccc
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQY-PHNLREFETELETIGSIRHRNIVSLHGYALSP-----YGN 687 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-----~~~ 687 (943)
.++|+..+.||+|+||.||+|.+. +++.||||++.... ......+.+|+++++.++||||+++++++..+ ...
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 89 (353)
T 2b9h_A 10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNEV 89 (353)
T ss_dssp CTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCCE
T ss_pred ccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccceE
Confidence 468999999999999999999976 57889999986433 23355778999999999999999999998654 567
Q ss_pred eEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccc
Q 002278 688 LLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARC 767 (943)
Q Consensus 688 ~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~ 767 (943)
++||||+. |+|.+++. ...+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+++.
T Consensus 90 ~lv~e~~~-~~L~~~~~----~~~~~~~~~~~~~~qi~~~L~~LH~~---~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~ 161 (353)
T 2b9h_A 90 YIIQELMQ-TDLHRVIS----TQMLSDDHIQYFIYQTLRAVKVLHGS---NVIHRDLKPSNLLINSNCDLKVCDFGLARI 161 (353)
T ss_dssp EEEECCCS-EEHHHHHH----HCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECCCTTCEE
T ss_pred EEEEeccC-ccHHHHHh----hcCCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEEcCCCcEEEEecccccc
Confidence 99999996 68999885 24689999999999999999999999 999999999999999999999999999987
Q ss_pred cCCCCCc---------eeeeEecccceeCcccccc-CCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccc
Q 002278 768 IPTAMPH---------ASTFVLGTIGYIDPEYAHT-SRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNT 837 (943)
Q Consensus 768 ~~~~~~~---------~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~ 837 (943)
....... ......||+.|+|||++.+ ..++.++|||||||++|||++|+.||.+..............+.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~ 241 (353)
T 2b9h_A 162 IDESAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDYRHQLLLIFGIIGT 241 (353)
T ss_dssp CC----------------CCCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCC
T ss_pred cccccccccCccccccchhhccccccccCCeeeccCCCccchhhHHHHHHHHHHHHhCCCCCCCCCcHHHHHHHHHHhCC
Confidence 6432211 1122468999999998764 67899999999999999999999999877655444332211111
Q ss_pred cccccC----------------cccccCc---cCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhh
Q 002278 838 VMEAVD----------------PEVSVTC---VDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVS 886 (943)
Q Consensus 838 ~~~~~~----------------~~~~~~~---~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~ 886 (943)
...... +...... ........+.+++.+||+.||++|||+.|+++|-+-
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~~ 309 (353)
T 2b9h_A 242 PHSDNDLRCIESPRAREYIKSLPMYPAAPLEKMFPRVNPKGIDLLQRMLVFDPAKRITAKEALEHPYL 309 (353)
T ss_dssp CCSTTTTTTCCCHHHHHHHHTSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGG
T ss_pred CchhccccccccchhhHHhhcccCCCCcchhhhcccCCHHHHHHHHHhcCcCcccCCCHHHHhcCccc
Confidence 000000 0000000 000112467799999999999999999999998654
No 253
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}
Probab=100.00 E-value=5e-38 Score=348.02 Aligned_cols=266 Identities=26% Similarity=0.370 Sum_probs=198.0
Q ss_pred HhhccccceEEeeeceEEEEEEEecCCceEEEEEecccCcccHHHHHHHHHH--HhcCCCCCcceeeeEEec-----CCc
Q 002278 614 STENLSEKYIVGYGASSTVYKCALKNSRPIAVKKLYNQYPHNLREFETELET--IGSIRHRNIVSLHGYALS-----PYG 686 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~--l~~l~h~niv~l~~~~~~-----~~~ 686 (943)
..++|+..+.||+|+||+||+|+. +++.||||++... ....+..|.++ +..++||||+++++++.. ...
T Consensus 11 ~~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~---~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~ 86 (336)
T 3g2f_A 11 DLDNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFA---NRQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRME 86 (336)
T ss_dssp CTTSEEEEEEEEECSSEEEEEEEE-TTEEEEEEEEEGG---GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEE
T ss_pred ChHHhheeeecccCCCeEEEEEEE-CCeEEEEEEeecc---chhhHHHHHHHHHHHhccCcchhhheecccccccCCCce
Confidence 357899999999999999999977 5789999998643 23444445554 445899999999986542 224
Q ss_pred ceEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCC------CCCeEecCCCCccEEECCCCceeec
Q 002278 687 NLLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDC------NPRIIHRDVKSSNILIDENFDAHLS 760 (943)
Q Consensus 687 ~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~------~~~ivH~Dlkp~Nill~~~~~~kl~ 760 (943)
.++||||+++|+|.+++.. ...++..+..++.|++.||+|||+.+ .++|+||||||+||+++.++.+||+
T Consensus 87 ~~lv~e~~~~g~L~~~l~~----~~~~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kL~ 162 (336)
T 3g2f_A 87 YLLVMEYYPNGSLXKYLSL----HTSDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVIS 162 (336)
T ss_dssp EEEEECCCTTCBHHHHHHH----CCBCHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCCEECSSCSGGGEEECTTSCEEEC
T ss_pred EEEEEecCCCCcHHHHHhh----cccchhHHHHHHHHHHHHHHHHHhhhccccccccceeecccccceEEEcCCCcEEEe
Confidence 5899999999999999952 34589999999999999999999762 3389999999999999999999999
Q ss_pred ccccccccCCCCC-------ceeeeEecccceeCcccccc-------CCCCCcchhhhHHHHHHHHHhCCCCCCCCccH-
Q 002278 761 DFGIARCIPTAMP-------HASTFVLGTIGYIDPEYAHT-------SRLNEKSDVYSFGIVLLEILTGKKAVDNESNL- 825 (943)
Q Consensus 761 DFGla~~~~~~~~-------~~~~~~~gt~~y~aPE~~~~-------~~~~~~~DvwSlGvil~elltG~~p~~~~~~~- 825 (943)
|||+++.+..... .......||+.|+|||++.+ ..++.++|||||||++|||++|+.||......
T Consensus 163 DFG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~ 242 (336)
T 3g2f_A 163 DFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGESVP 242 (336)
T ss_dssp CCTTCEECSSSSCC---------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGSTTSCCC
T ss_pred eccceeecccccccCccccccccccCCCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCCCccchh
Confidence 9999987643221 11123358999999999887 35667999999999999999997776432110
Q ss_pred ----------------HHHHHHhccccccccccCcccccCcc-CHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcC
Q 002278 826 ----------------HQLIMSKADDNTVMEAVDPEVSVTCV-DLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLL 888 (943)
Q Consensus 826 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~ 888 (943)
...... .... ...+.++.... .......+.+++..||+.||++|||+.|+++.|+.+.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~e~l~~L~~ll 317 (336)
T 3g2f_A 243 EYQMAFQTEVGNHPTFEDMQVL-VSRE----KQRPKFPEAWKENSLAVRSLKETIEDCWDQDAEARLTAQXAEERMAELM 317 (336)
T ss_dssp CCCCTTHHHHCSSCCHHHHHHH-HTTS----CCCCCCCTTCCCCSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHH
T ss_pred HHHHhhhcccCCCchHHHHHhh-hccc----ccCCCCCcccccccchHHHHHHHHHHHhcCChhhCcchHHHHHHHHHHH
Confidence 010000 0001 11122221111 1234567899999999999999999999999998877
Q ss_pred CCCC
Q 002278 889 PAPP 892 (943)
Q Consensus 889 ~~~~ 892 (943)
....
T Consensus 318 ~~~~ 321 (336)
T 3g2f_A 318 MIWE 321 (336)
T ss_dssp HCCC
T ss_pred HHHH
Confidence 5443
No 254
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Probab=100.00 E-value=1.2e-37 Score=354.60 Aligned_cols=261 Identities=24% Similarity=0.283 Sum_probs=198.8
Q ss_pred hhccccceEEeeeceEEEEEEEec-CCceEEEEEecccCcccHHHHHHHHHHHhcCCCCCcceeeeEEecCC------cc
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYPHNLREFETELETIGSIRHRNIVSLHGYALSPY------GN 687 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~------~~ 687 (943)
..+|+..+.||+|+||.||+|+++ +++.||||++.... ....+|+++++.++|||||++++++.... ..
T Consensus 53 ~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~----~~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~ 128 (420)
T 1j1b_A 53 EVSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK----RFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYL 128 (420)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCT----TSCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEE
T ss_pred cceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccc----hhHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeE
Confidence 346889999999999999999986 58999999986532 22347999999999999999999985421 25
Q ss_pred eEEEEEccCCChhhhccC-CCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCC-Cceeecccccc
Q 002278 688 LLFYDYMVNGSLWDLLHG-PSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDEN-FDAHLSDFGIA 765 (943)
Q Consensus 688 ~lv~e~~~~g~L~~~l~~-~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~-~~~kl~DFGla 765 (943)
++||||+++ ++.+.+.. ......+++..+..++.||+.||+|||+. +|+||||||+|||++.+ +.+||+|||++
T Consensus 129 ~lv~e~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NILl~~~~~~~kl~DFG~a 204 (420)
T 1j1b_A 129 NLVLDYVPE-TVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSF---GICHRDIKPQNLLLDPDTAVLKLCDFGSA 204 (420)
T ss_dssp EEEEECCCE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCSGGGEEEETTTTEEEECCCTTC
T ss_pred Eeehhcccc-cHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChhhEEEeCCCCeEEeccchhh
Confidence 689999976 56555431 11245689999999999999999999999 99999999999999955 56899999999
Q ss_pred cccCCCCCceeeeEecccceeCccccccC-CCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccc-----
Q 002278 766 RCIPTAMPHASTFVLGTIGYIDPEYAHTS-RLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVM----- 839 (943)
Q Consensus 766 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~----- 839 (943)
+.+...... ....||+.|+|||++.+. .++.++|||||||++|||++|+.||.+......+..+....+...
T Consensus 205 ~~~~~~~~~--~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~~~~~~l~~i~~~lg~p~~~~~~ 282 (420)
T 1j1b_A 205 KQLVRGEPN--VSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEIIKVLGTPTREQIR 282 (420)
T ss_dssp EECCTTCCC--CSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHHHH
T ss_pred hhcccCCCc--eeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHH
Confidence 876443222 234689999999998765 799999999999999999999999998776665554433211110
Q ss_pred -------cccCcccccCc----cCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 002278 840 -------EAVDPEVSVTC----VDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLV 885 (943)
Q Consensus 840 -------~~~~~~~~~~~----~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~ 885 (943)
+...+.+.... ........+.+++.+||+.||++|||+.|+++|-+
T Consensus 283 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~Li~~~L~~dP~~R~t~~e~l~hp~ 339 (420)
T 1j1b_A 283 EMNPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSF 339 (420)
T ss_dssp HHCSCCCCCCCCCCCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTSGG
T ss_pred hhChhhhhhccCccCCCCHHHhcCCCCCHHHHHHHHHhccCChhHCCCHHHHhCCHh
Confidence 00011110000 00011256789999999999999999999998765
No 255
>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}
Probab=100.00 E-value=1.7e-37 Score=341.09 Aligned_cols=264 Identities=22% Similarity=0.306 Sum_probs=198.9
Q ss_pred hhccccceEEeeeceEEEEEEEecC-CceEEEEEecccCcccHHHHHHHHHHHhcCCCCCcceeeeEEec----------
Q 002278 615 TENLSEKYIVGYGASSTVYKCALKN-SRPIAVKKLYNQYPHNLREFETELETIGSIRHRNIVSLHGYALS---------- 683 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~~-~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~---------- 683 (943)
.++|...+.||+|+||.||+|.+.. ++.||+|++........+.+.+|+++++.++||||+++++++..
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~ 89 (320)
T 2i6l_A 10 GSRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVG 89 (320)
T ss_dssp TTTEEEEEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC---
T ss_pred CCceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCeeEEEEeccccccccccccc
Confidence 4689999999999999999999874 88999999876666667788999999999999999999998843
Q ss_pred ----CCcceEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEEC-CCCcee
Q 002278 684 ----PYGNLLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILID-ENFDAH 758 (943)
Q Consensus 684 ----~~~~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~-~~~~~k 758 (943)
....++||||++ |+|.+++. ...+++..+..++.|++.||+|||+. +|+||||||+||+++ +++.+|
T Consensus 90 ~~~~~~~~~lv~e~~~-~~L~~~~~----~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~k 161 (320)
T 2i6l_A 90 SLTELNSVYIVQEYME-TDLANVLE----QGPLLEEHARLFMYQLLRGLKYIHSA---NVLHRDLKPANLFINTEDLVLK 161 (320)
T ss_dssp -CCSCSEEEEEEECCS-EEHHHHHT----TCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEEETTTTEEE
T ss_pred cccccCceeEEeeccC-CCHHHHhh----cCCccHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEEcCCCCeEE
Confidence 356789999997 69999985 34689999999999999999999999 999999999999997 567999
Q ss_pred ecccccccccCCCCCc--eeeeEecccceeCcccccc-CCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccc
Q 002278 759 LSDFGIARCIPTAMPH--ASTFVLGTIGYIDPEYAHT-SRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADD 835 (943)
Q Consensus 759 l~DFGla~~~~~~~~~--~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~ 835 (943)
|+|||+++........ ......||..|+|||++.+ ..++.++|||||||++|||++|+.||.+..............
T Consensus 162 l~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~ 241 (320)
T 2i6l_A 162 IGDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAHELEQMQLILESI 241 (320)
T ss_dssp ECCCTTCBCC--------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHS
T ss_pred EccCccccccCCCcccccccccccccccccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhc
Confidence 9999999876432111 1122347899999998865 678999999999999999999999998776554433332211
Q ss_pred ccccccc-----------------CcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhh
Q 002278 836 NTVMEAV-----------------DPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVS 886 (943)
Q Consensus 836 ~~~~~~~-----------------~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~ 886 (943)
....... .+..............+.+++..|++.||++|||+.++++|-+-
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~~ 309 (320)
T 2i6l_A 242 PVVHEEDRQELLSVIPVYIRNDMTEPHKPLTQLLPGISREAVDFLEQILTFSPMDRLTAEEALSHPYM 309 (320)
T ss_dssp CCCCHHHHHHHHTTSCHHHHHHTTSCCCCHHHHSTTCCHHHHHHHHTTSCSSGGGSCCHHHHHTSHHH
T ss_pred CCCchhhhhhhhhcCcccccccccCCCCChhHhcchhhHHHHHHHHHHcCCCccccCCHHHHhCCccc
Confidence 1110000 00000000000112567899999999999999999999997653
No 256
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...
Probab=100.00 E-value=5.8e-37 Score=338.53 Aligned_cols=257 Identities=19% Similarity=0.218 Sum_probs=201.3
Q ss_pred hhccccceEEeeeceEEEEEEEec-CCceEEEEEecccCcccHHHHHHHHHHHhcCC-CCCcceeeeEEec--CCcceEE
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYPHNLREFETELETIGSIR-HRNIVSLHGYALS--PYGNLLF 690 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~--~~~~~lv 690 (943)
.++|+..+.||+|+||+||+|.+. +++.||+|++.. ...+.+.+|+++++.++ ||||+++++++.+ ....++|
T Consensus 35 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~---~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~lv 111 (330)
T 3nsz_A 35 QDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKP---VKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPALV 111 (330)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECS---CCHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEEE
T ss_pred CCceEEEEEecccCCeEEEEEEECCCCcEEEEEEecc---cchHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEEE
Confidence 468999999999999999999875 678999999864 34578899999999997 9999999999987 5567999
Q ss_pred EEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCC-ceeecccccccccC
Q 002278 691 YDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENF-DAHLSDFGIARCIP 769 (943)
Q Consensus 691 ~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~-~~kl~DFGla~~~~ 769 (943)
|||+.+++|.+++. .+++.++..++.|++.||+|||+. +|+||||||+||+++.++ .+||+|||+++...
T Consensus 112 ~e~~~~~~l~~~~~------~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~ 182 (330)
T 3nsz_A 112 FEHVNNTDFKQLYQ------TLTDYDIRFYMYEILKALDYCHSM---GIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYH 182 (330)
T ss_dssp EECCCCCCHHHHGG------GCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTTEEEECCCTTCEECC
T ss_pred EeccCchhHHHHHH------hCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEEcCCCCEEEEEeCCCceEcC
Confidence 99999999999884 388999999999999999999999 999999999999999776 89999999998765
Q ss_pred CCCCceeeeEecccceeCcccccc-CCCCCcchhhhHHHHHHHHHhCCCCCCCCcc-HHHHHHHhccccc--cc------
Q 002278 770 TAMPHASTFVLGTIGYIDPEYAHT-SRLNEKSDVYSFGIVLLEILTGKKAVDNESN-LHQLIMSKADDNT--VM------ 839 (943)
Q Consensus 770 ~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGvil~elltG~~p~~~~~~-~~~~~~~~~~~~~--~~------ 839 (943)
.... .....|++.|+|||++.+ ..++.++||||+||++|||++|+.||..... ...........+. ..
T Consensus 183 ~~~~--~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 260 (330)
T 3nsz_A 183 PGQE--YNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKY 260 (330)
T ss_dssp TTCC--CCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHHHCHHHHHHHHHHT
T ss_pred CCCc--cccccccccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCcccCCchHHHHHHHHHhcCCchhhhHHHHh
Confidence 4332 223468999999999887 6799999999999999999999999964332 2222211110000 00
Q ss_pred -cccCc---------------ccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 002278 840 -EAVDP---------------EVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLV 885 (943)
Q Consensus 840 -~~~~~---------------~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~ 885 (943)
...++ .+............+.+++..|++.||++|||+.|+++|-+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpta~e~l~hp~ 322 (330)
T 3nsz_A 261 NIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPY 322 (330)
T ss_dssp TCCCCTHHHHHHCCCCCCCGGGGCCTTTGGGCCHHHHHHHHTTSCSSGGGSCCHHHHHTSGG
T ss_pred ccccccchhhhhhhccccchhhhccccccccCCHHHHHHHHHHhcCCcccCCCHHHHhcCcc
Confidence 00000 00000000012356789999999999999999999999754
No 257
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}
Probab=100.00 E-value=8.8e-38 Score=349.96 Aligned_cols=254 Identities=15% Similarity=0.146 Sum_probs=204.2
Q ss_pred HhhccccceEEeeeceEEEEEEE------ecCCceEEEEEecccCcccHHHHHHHHHHHhcCC---CCCcceeeeEEecC
Q 002278 614 STENLSEKYIVGYGASSTVYKCA------LKNSRPIAVKKLYNQYPHNLREFETELETIGSIR---HRNIVSLHGYALSP 684 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~------~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~---h~niv~l~~~~~~~ 684 (943)
..++|...+.||+|+||+||+|. ...++.||+|++... ...++..|+++++.++ |+||+++++++...
T Consensus 63 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~---~~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~~ 139 (365)
T 3e7e_A 63 GSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPA---NPWEFYIGTQLMERLKPSMQHMFMKFYSAHLFQ 139 (365)
T ss_dssp SSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSC---CHHHHHHHHHHHHHSCGGGGGGBCCEEEEEECS
T ss_pred CCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCC---ChhHHHHHHHHHHHhhhhhhhhhhhhheeeecC
Confidence 45789999999999999999994 345789999998653 4567888888888887 99999999999999
Q ss_pred CcceEEEEEccCCChhhhccCCC--CCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECC---------
Q 002278 685 YGNLLFYDYMVNGSLWDLLHGPS--KKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDE--------- 753 (943)
Q Consensus 685 ~~~~lv~e~~~~g~L~~~l~~~~--~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~--------- 753 (943)
+..++||||+++|+|.+++.... ....+++..++.++.|++.||+|||++ +||||||||+|||++.
T Consensus 140 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH~~---~ivHrDiKp~NIll~~~~~~~~~~~ 216 (365)
T 3e7e_A 140 NGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVHDC---EIIHGDIKPDNFILGNGFLEQDDED 216 (365)
T ss_dssp SCEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECGGGTCC----
T ss_pred CCcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHhhC---CeecCCCCHHHEEecccccCccccc
Confidence 99999999999999999996311 235699999999999999999999999 9999999999999998
Q ss_pred --CCceeecccccccccCCC-CCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHH
Q 002278 754 --NFDAHLSDFGIARCIPTA-MPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIM 830 (943)
Q Consensus 754 --~~~~kl~DFGla~~~~~~-~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~ 830 (943)
++.+||+|||+|+.+... .........||+.|+|||++.+..++.++|||||||++|||+||+.||......
T Consensus 217 ~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~----- 291 (365)
T 3e7e_A 217 DLSAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVKNEGG----- 291 (365)
T ss_dssp --CTTEEECCCTTCEEGGGSCTTEEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCCCEEEETT-----
T ss_pred cccCCEEEeeCchhhhhhccCCCceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHHhCCCccccCCCC-----
Confidence 899999999999765322 223334456999999999999999999999999999999999999999643210
Q ss_pred HhccccccccccCcccccCccCHHHHHHHHHHHHHccCCCCCCC-CCHHHHHHHHhhcCCC
Q 002278 831 SKADDNTVMEAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSER-PTMQEVARVLVSLLPA 890 (943)
Q Consensus 831 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~R-Pt~~el~~~L~~~~~~ 890 (943)
........+.. .. ...+.+++..|++.+|.+| |+++++.+.++.+...
T Consensus 292 -----~~~~~~~~~~~----~~---~~~~~~~~~~~l~~~p~~r~~~~~~l~~~l~~~l~~ 340 (365)
T 3e7e_A 292 -----ECKPEGLFRRL----PH---LDMWNEFFHVMLNIPDCHHLPSLDLLRQKLKKVFQQ 340 (365)
T ss_dssp -----EEEECSCCTTC----SS---HHHHHHHHHHHHCCCCTTCCCCHHHHHHHHHHHHHH
T ss_pred -----ceeechhcccc----Cc---HHHHHHHHHHHcCCCCCCcchHHHHHHHHHHHHHHH
Confidence 00001111111 11 2455678999999999998 5788888888776543
No 258
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Probab=100.00 E-value=3.9e-37 Score=341.23 Aligned_cols=261 Identities=20% Similarity=0.257 Sum_probs=205.8
Q ss_pred hhccccceEEeeeceEEEEEEEe-c-CCceEEEEEecccCcccHHHHHHHHHHHhcCCCC------CcceeeeEEecCCc
Q 002278 615 TENLSEKYIVGYGASSTVYKCAL-K-NSRPIAVKKLYNQYPHNLREFETELETIGSIRHR------NIVSLHGYALSPYG 686 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~-~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~------niv~l~~~~~~~~~ 686 (943)
.++|+..+.||+|+||+||+|.+ + +++.||+|++... ....+.+.+|+++++.++|+ +++++++++...+.
T Consensus 13 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~~ 91 (339)
T 1z57_A 13 SARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNV-DRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHGH 91 (339)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSS-HHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETTE
T ss_pred cCceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecC-CchhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccCCc
Confidence 46899999999999999999987 3 5788999998643 33456788899999888655 59999999999999
Q ss_pred ceEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECC-------------
Q 002278 687 NLLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDE------------- 753 (943)
Q Consensus 687 ~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~------------- 753 (943)
.++||||+ +++|.+++... ....+++.++..++.|++.||+|||++ +|+||||||+||+++.
T Consensus 92 ~~lv~e~~-~~~l~~~l~~~-~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~~~~~~~ 166 (339)
T 1z57_A 92 ICIVFELL-GLSTYDFIKEN-GFLPFRLDHIRKMAYQICKSVNFLHSN---KLTHTDLKPENILFVQSDYTEAYNPKIKR 166 (339)
T ss_dssp EEEEEECC-CCBHHHHHHHT-TTCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESCCCEEEEEC----C
T ss_pred EEEEEcCC-CCCHHHHHHhc-CCCCCcHHHHHHHHHHHHHHHHHHHHC---CCcCCCCCHHHEEEeccccccccCCcccc
Confidence 99999999 89999998643 223689999999999999999999999 9999999999999987
Q ss_pred ------CCceeecccccccccCCCCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHH
Q 002278 754 ------NFDAHLSDFGIARCIPTAMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQ 827 (943)
Q Consensus 754 ------~~~~kl~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~ 827 (943)
++.+||+|||+++...... ....||+.|+|||++.+..++.++|||||||++|||++|+.||........
T Consensus 167 ~~~~~~~~~~kl~Dfg~~~~~~~~~----~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~ 242 (339)
T 1z57_A 167 DERTLINPDIKVVDFGSATYDDEHH----STLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFPTHDSKEH 242 (339)
T ss_dssp EEEEESCCCEEECCCSSCEETTSCC----CSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSCHHHH
T ss_pred ccccccCCCceEeeCcccccCcccc----ccccCCccccChHHhhCCCCCcchhhHHHHHHHHHHHhCCCCCCCCChHHH
Confidence 6789999999998754332 234589999999999999999999999999999999999999987665443
Q ss_pred HHHHhcccccccccc-------------------------------CcccccCccCHHHHHHHHHHHHHccCCCCCCCCC
Q 002278 828 LIMSKADDNTVMEAV-------------------------------DPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPT 876 (943)
Q Consensus 828 ~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt 876 (943)
........+..+... .+..............+.+++..||+.||++|||
T Consensus 243 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt 322 (339)
T 1z57_A 243 LAMMERILGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHERLFDLIQKMLEYDPAKRIT 322 (339)
T ss_dssp HHHHHHHHCSCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCC
T ss_pred HHHHHHHhCCCCHHHHhhccchhHHhhccccccccccccchhhhcCcchhhhcccchhhHHHHHHHHHHHhCcCcccccC
Confidence 322221111111100 0000001112234567889999999999999999
Q ss_pred HHHHHHHHh
Q 002278 877 MQEVARVLV 885 (943)
Q Consensus 877 ~~el~~~L~ 885 (943)
+.|+++|-+
T Consensus 323 ~~ell~hp~ 331 (339)
T 1z57_A 323 LREALKHPF 331 (339)
T ss_dssp HHHHTTSGG
T ss_pred HHHHhcCHH
Confidence 999988743
No 259
>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A
Probab=100.00 E-value=7.2e-37 Score=342.96 Aligned_cols=258 Identities=22% Similarity=0.273 Sum_probs=202.2
Q ss_pred hhccccceEEeeeceEEEEEEEec-CCceEEEEEecccCc--ccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcc----
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYP--HNLREFETELETIGSIRHRNIVSLHGYALSPYGN---- 687 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~---- 687 (943)
.++|...+.||+|+||+||+|.++ +++.||+|++..... ...+.+.+|+.+++.++||||+++++++......
T Consensus 41 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 120 (371)
T 4exu_A 41 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY 120 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCC
T ss_pred cccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccce
Confidence 468999999999999999999976 578999999975432 2356788999999999999999999999877655
Q ss_pred --eEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccc
Q 002278 688 --LLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIA 765 (943)
Q Consensus 688 --~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla 765 (943)
++||||+. |+|.+++. ..+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+|||++
T Consensus 121 ~~~lv~e~~~-~~l~~~~~-----~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kL~Dfg~a 191 (371)
T 4exu_A 121 DFYLVMPFMQ-TDLQKIMG-----MEFSEEKIQYLVYQMLKGLKYIHSA---GVVHRDLKPGNLAVNEDCELKILDFGLA 191 (371)
T ss_dssp CCEEEEECCC-EEHHHHTT-----SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECSTTCC
T ss_pred eEEEEEcccc-ccHHHHhh-----cCCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCcCHHHeEECCCCCEEEEecCcc
Confidence 99999996 68888774 2489999999999999999999999 9999999999999999999999999999
Q ss_pred cccCCCCCceeeeEecccceeCcccccc-CCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCc
Q 002278 766 RCIPTAMPHASTFVLGTIGYIDPEYAHT-SRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDP 844 (943)
Q Consensus 766 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 844 (943)
+..... .....||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+..............+........
T Consensus 192 ~~~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~ 267 (371)
T 4exu_A 192 RHADAE----MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGTEFVQ 267 (371)
T ss_dssp ------------CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCHHHHT
T ss_pred cccccC----cCCcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhCCCcHHHHH
Confidence 865432 223458999999999887 679999999999999999999999999876655544443222111111000
Q ss_pred ccc-------------cCccCH-----HHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 002278 845 EVS-------------VTCVDL-----SAVRKTFQLALLCTKRYPSERPTMQEVARVLV 885 (943)
Q Consensus 845 ~~~-------------~~~~~~-----~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~ 885 (943)
.+. ...... .....+.+++..|++.||++|||+.|+++|-+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~ 326 (371)
T 4exu_A 268 KLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALTHPF 326 (371)
T ss_dssp TCSCHHHHHHHHHSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSCTTTSCCHHHHHTSGG
T ss_pred HhhhhhhhhhhhccCCCcchhHHHhccccChHHHHHHHHHCCCChhhcCCHHHHhcCcc
Confidence 000 000000 11256789999999999999999999999865
No 260
>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A
Probab=100.00 E-value=4.3e-37 Score=335.10 Aligned_cols=254 Identities=24% Similarity=0.397 Sum_probs=195.7
Q ss_pred HhhccccceEEeeeceEEEEEEEec-CCceEEEEEecccCcccHHHHHHHHHHHhcCCCCCcceeeeEEec---------
Q 002278 614 STENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYPHNLREFETELETIGSIRHRNIVSLHGYALS--------- 683 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~--------- 683 (943)
..++|+..+.||+|+||.||+|+.. +++.||+|++... ....+.+.+|+++++.++||||+++++++.+
T Consensus 4 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~ 82 (303)
T 1zy4_A 4 YASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHT-EEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMT 82 (303)
T ss_dssp HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEE-HHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC---
T ss_pred ccccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEecc-HHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhc
Confidence 4578999999999999999999975 6889999998543 3445678899999999999999999999865
Q ss_pred ----CCcceEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceee
Q 002278 684 ----PYGNLLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHL 759 (943)
Q Consensus 684 ----~~~~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl 759 (943)
....++||||+++|+|.+++.. ....+++..++.++.|++.||+|||++ +|+||||||+||+++.++.+||
T Consensus 83 ~~~~~~~~~lv~e~~~~~~L~~~l~~--~~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dlkp~Nil~~~~~~~kl 157 (303)
T 1zy4_A 83 AVKKKSTLFIQMEYCENGTLYDLIHS--ENLNQQRDEYWRLFRQILEALSYIHSQ---GIIHRDLKPMNIFIDESRNVKI 157 (303)
T ss_dssp ---CEEEEEEEEECCCSCBHHHHHHH--SCGGGCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEE
T ss_pred ccccCCceEEEEecCCCCCHHHhhhc--cccccchHHHHHHHHHHHHHHHHHHhC---CeecccCCHHhEEEcCCCCEEE
Confidence 3456899999999999999963 234678899999999999999999999 9999999999999999999999
Q ss_pred cccccccccCCCC-------------CceeeeEecccceeCccccccC-CCCCcchhhhHHHHHHHHHhCCCCCCCCccH
Q 002278 760 SDFGIARCIPTAM-------------PHASTFVLGTIGYIDPEYAHTS-RLNEKSDVYSFGIVLLEILTGKKAVDNESNL 825 (943)
Q Consensus 760 ~DFGla~~~~~~~-------------~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwSlGvil~elltG~~p~~~~~~~ 825 (943)
+|||+++...... ........||+.|+|||++.+. .++.++|||||||++|||++ ||......
T Consensus 158 ~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~---p~~~~~~~ 234 (303)
T 1zy4_A 158 GDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY---PFSTGMER 234 (303)
T ss_dssp CCCCCCSCTTC-------------------------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHS---CCSSHHHH
T ss_pred eeCcchhhcccccchhccccccccccccccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHHHHh---ccCCchhH
Confidence 9999998764321 1122345689999999998864 68999999999999999998 55433222
Q ss_pred HHHHHHhcc-ccccccccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 002278 826 HQLIMSKAD-DNTVMEAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLV 885 (943)
Q Consensus 826 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~ 885 (943)
......... ....+ +.+.. .....+.+++..||+.||++|||+.+++++-+
T Consensus 235 ~~~~~~~~~~~~~~~----~~~~~-----~~~~~~~~li~~~l~~dp~~Rps~~~ll~h~~ 286 (303)
T 1zy4_A 235 VNILKKLRSVSIEFP----PDFDD-----NKMKVEKKIIRLLIDHDPNKRPGARTLLNSGW 286 (303)
T ss_dssp HHHHHHHHSTTCCCC----TTCCT-----TTSHHHHHHHHHHTCSSGGGSCCHHHHHHSSC
T ss_pred HHHHHhccccccccC----ccccc-----cchHHHHHHHHHHHhcCcccCcCHHHHhCCCC
Confidence 222222211 11111 11111 11245678999999999999999999999744
No 261
>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B
Probab=100.00 E-value=2.7e-37 Score=340.56 Aligned_cols=264 Identities=23% Similarity=0.241 Sum_probs=203.7
Q ss_pred HHhhccccceEEeeeceEEEEEEEec--CCceEEEEEecccC--cccHHHHHHHHHHHhcC---CCCCcceeeeEEe---
Q 002278 613 RSTENLSEKYIVGYGASSTVYKCALK--NSRPIAVKKLYNQY--PHNLREFETELETIGSI---RHRNIVSLHGYAL--- 682 (943)
Q Consensus 613 ~~~~~~~~~~~lG~G~~g~Vy~~~~~--~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l---~h~niv~l~~~~~--- 682 (943)
+..++|+..+.||+|+||.||+|.+. +++.||+|++.... ......+.+|+++++.+ +||||+++++++.
T Consensus 8 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~ 87 (326)
T 1blx_A 8 RADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSR 87 (326)
T ss_dssp CGGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEE
T ss_pred CchhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeecc
Confidence 35678999999999999999999984 57889999886432 12223556677776655 8999999999987
Q ss_pred --cCCcceEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeec
Q 002278 683 --SPYGNLLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLS 760 (943)
Q Consensus 683 --~~~~~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~ 760 (943)
.....++||||+. |+|.+++... ....+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+
T Consensus 88 ~~~~~~~~lv~e~~~-~~L~~~l~~~-~~~~~~~~~~~~~~~qi~~~l~~lH~~---gi~H~dlkp~Nili~~~~~~kl~ 162 (326)
T 1blx_A 88 TDRETKLTLVFEHVD-QDLTTYLDKV-PEPGVPTETIKDMMFQLLRGLDFLHSH---RVVHRDLKPQNILVTSSGQIKLA 162 (326)
T ss_dssp CSSEEEEEEEEECCS-CBHHHHHHHS-CTTCSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEEC
T ss_pred cCCCceEEEEEecCC-CCHHHHHHhc-ccCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCCHHHeEEcCCCCEEEe
Confidence 4566899999997 6999988643 223589999999999999999999999 99999999999999999999999
Q ss_pred ccccccccCCCCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhcccccccc
Q 002278 761 DFGIARCIPTAMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVME 840 (943)
Q Consensus 761 DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~ 840 (943)
|||+++...... ......||+.|+|||++.+..++.++|||||||++|||++|+.||.+..............+....
T Consensus 163 Dfg~~~~~~~~~--~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~i~~~~~~~~~ 240 (326)
T 1blx_A 163 DFGLARIYSFQM--ALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGE 240 (326)
T ss_dssp SCCSCCCCCGGG--GGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHHHHHHHHHHCCCCG
T ss_pred cCcccccccCCC--CccccccccceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHcCCCCc
Confidence 999998664321 223346899999999999999999999999999999999999999877665544433321111000
Q ss_pred ccCc----------------ccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 002278 841 AVDP----------------EVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLV 885 (943)
Q Consensus 841 ~~~~----------------~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~ 885 (943)
..++ ..... .......+.+++.+||+.||++|||+.++++|-+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~ 299 (326)
T 1blx_A 241 EDWPRDVALPRQAFHSKSAQPIEKF--VTDIDELGKDLLLKCLTFNPAKRISAYSALSHPY 299 (326)
T ss_dssp GGSCTTCSSCGGGSCCCCCCCGGGT--CCSCCHHHHHHHHHHSCSSTTTSCCHHHHHTSGG
T ss_pred ccCccccccchhhhcccCcchhhhc--cccCCHHHHHHHHHHcCCCcccCCCHHHHhcCcc
Confidence 0000 00000 0011246778999999999999999999998754
No 262
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=100.00 E-value=5.8e-37 Score=366.77 Aligned_cols=257 Identities=25% Similarity=0.345 Sum_probs=206.5
Q ss_pred HhhccccceEEeeeceEEEEEEEecC----CceEEEEEecccC-cccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcce
Q 002278 614 STENLSEKYIVGYGASSTVYKCALKN----SRPIAVKKLYNQY-PHNLREFETELETIGSIRHRNIVSLHGYALSPYGNL 688 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~~----~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 688 (943)
..++|+..+.||+|+||+||+|.+.. +..||+|++.... ....+.+.+|+.+++.++||||+++++++. ++..+
T Consensus 388 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~~~ 466 (656)
T 2j0j_A 388 QRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVW 466 (656)
T ss_dssp CGGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCE
T ss_pred ccccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-cCceE
Confidence 45788999999999999999998753 4568999886543 334467899999999999999999999985 45689
Q ss_pred EEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeeccccccccc
Q 002278 689 LFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCI 768 (943)
Q Consensus 689 lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~ 768 (943)
+||||+++|+|.+++.. ....+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++..
T Consensus 467 lv~E~~~~g~L~~~l~~--~~~~l~~~~~~~i~~qi~~aL~~LH~~---givHrDikp~NILl~~~~~vkL~DFG~a~~~ 541 (656)
T 2j0j_A 467 IIMELCTLGELRSFLQV--RKFSLDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGDFGLSRYM 541 (656)
T ss_dssp EEEECCTTCBHHHHHHH--TTTTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCCCCCCSC
T ss_pred EEEEcCCCCcHHHHHHh--ccCCCCHHHHHHHHHHHHHHHHHHHhC---CccccccchHhEEEeCCCCEEEEecCCCeec
Confidence 99999999999999963 234689999999999999999999999 9999999999999999999999999999877
Q ss_pred CCCCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHh-CCCCCCCCccHHHHHHHhccccccccccCcccc
Q 002278 769 PTAMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILT-GKKAVDNESNLHQLIMSKADDNTVMEAVDPEVS 847 (943)
Q Consensus 769 ~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 847 (943)
............||+.|+|||++.+..++.++|||||||++|||++ |..||.+................ ...+.+
T Consensus 542 ~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~~~~~i~~~~~~---~~~~~~- 617 (656)
T 2j0j_A 542 EDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNNDVIGRIENGERL---PMPPNC- 617 (656)
T ss_dssp CC----------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHHHHHHHHHHTCCC---CCCTTC-
T ss_pred CCCcceeccCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHcCCCC---CCCccc-
Confidence 5543333344557889999999999999999999999999999997 99999876654433332222111 011111
Q ss_pred cCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcC
Q 002278 848 VTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLL 888 (943)
Q Consensus 848 ~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~ 888 (943)
...+.+++..||+.||++|||+.++++.|+.+.
T Consensus 618 --------~~~l~~li~~~l~~dP~~RPs~~el~~~L~~il 650 (656)
T 2j0j_A 618 --------PPTLYSLMTKCWAYDPSRRPRFTELKAQLSTIL 650 (656)
T ss_dssp --------CHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred --------cHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHH
Confidence 246778999999999999999999999998764
No 263
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Probab=100.00 E-value=8.6e-37 Score=343.91 Aligned_cols=264 Identities=19% Similarity=0.192 Sum_probs=205.7
Q ss_pred HhhccccceEEeeeceEEEEEEEec-CCceEEEEEecccCcccHHHHHHHHHHHhcCC-CC-----CcceeeeEEecCCc
Q 002278 614 STENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYPHNLREFETELETIGSIR-HR-----NIVSLHGYALSPYG 686 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~-----niv~l~~~~~~~~~ 686 (943)
..++|+..+.||+|+||+||+|.++ +++.||||++... ......+..|+++++.++ |+ +|+++++++...+.
T Consensus 52 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~ 130 (382)
T 2vx3_A 52 WMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNK-KAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRNH 130 (382)
T ss_dssp ETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSS-HHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEETTE
T ss_pred eeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEecc-HHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccCCc
Confidence 3578999999999999999999976 5788999998643 233456778888888875 44 49999999999999
Q ss_pred ceEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEEC--CCCceeeccccc
Q 002278 687 NLLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILID--ENFDAHLSDFGI 764 (943)
Q Consensus 687 ~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~--~~~~~kl~DFGl 764 (943)
.++||||+. |+|.+++... ....+++..+..++.|++.||+|||++ ..+|+||||||+||+++ .++.+||+|||+
T Consensus 131 ~~lv~e~~~-~~L~~~l~~~-~~~~~~~~~~~~i~~qi~~al~~lH~~-~~~ivHrDlkp~NIll~~~~~~~~kL~DFG~ 207 (382)
T 2vx3_A 131 LCLVFEMLS-YNLYDLLRNT-NFRGVSLNLTRKFAQQMCTALLFLATP-ELSIIHCDLKPENILLCNPKRSAIKIVDFGS 207 (382)
T ss_dssp EEEEEECCC-CBHHHHHHHT-TTSCCCHHHHHHHHHHHHHHHHHHTST-TTCEECCCCSGGGEEESSTTSCCEEECCCTT
T ss_pred eEEEEecCC-CCHHHHHhhc-CcCCCCHHHHHHHHHHHHHHHHHhccC-CCCEEcCCCCcccEEEecCCCCcEEEEeccC
Confidence 999999995 5999998643 224589999999999999999999952 23899999999999995 578899999999
Q ss_pred ccccCCCCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccC-
Q 002278 765 ARCIPTAMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVD- 843 (943)
Q Consensus 765 a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~- 843 (943)
++...... ....||+.|+|||++.+..++.++|||||||++|||+||+.||.+.........+....+.......
T Consensus 208 a~~~~~~~----~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf~~~~~~~~~~~i~~~~~~~~~~~~~ 283 (382)
T 2vx3_A 208 SCQLGQRI----YQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGANEVDQMNKIVEVLGIPPAHILD 283 (382)
T ss_dssp CEETTCCC----CSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHHHHHHHHHHHCSCCHHHHT
T ss_pred ceeccccc----ccccCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHH
Confidence 98765432 2346899999999999999999999999999999999999999987665554443322111110000
Q ss_pred -------------------------------ccc-------------------ccCccCHHHHHHHHHHHHHccCCCCCC
Q 002278 844 -------------------------------PEV-------------------SVTCVDLSAVRKTFQLALLCTKRYPSE 873 (943)
Q Consensus 844 -------------------------------~~~-------------------~~~~~~~~~~~~l~~l~~~cl~~dP~~ 873 (943)
+.. ........+...+.+++.+||+.||++
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dP~~ 363 (382)
T 2vx3_A 284 QAPKARKFFEKLPDGTWNLKKTKDGKREYKPPGTRKLHNILGVETGGPGGRRAGESGHTVADYLKFKDLILRMLDYDPKT 363 (382)
T ss_dssp TCTTHHHHEEECTTSCEEECCCCTTCCCSCCTTCSCHHHHHTTTTTSGGGTTTTCTTCCHHHHHHHHHHHHHHTCSCTTT
T ss_pred hhHHHHHHHHhccccccccccccccccccCCcchhhHHHHhhccccCCCccccccccccchhhHHHHHHHHHhcCCChhh
Confidence 000 000011233457889999999999999
Q ss_pred CCCHHHHHHHHh
Q 002278 874 RPTMQEVARVLV 885 (943)
Q Consensus 874 RPt~~el~~~L~ 885 (943)
|||+.|+++|-+
T Consensus 364 Rpta~e~L~hp~ 375 (382)
T 2vx3_A 364 RIQPYYALQHSF 375 (382)
T ss_dssp SCCHHHHTTSGG
T ss_pred CCCHHHHhcCcc
Confidence 999999998754
No 264
>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A
Probab=100.00 E-value=5e-37 Score=332.40 Aligned_cols=257 Identities=22% Similarity=0.276 Sum_probs=188.9
Q ss_pred HhhccccceEEeeeceEEEEEEEec-CCceEEEEEecccCc-cc-HHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEE
Q 002278 614 STENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYP-HN-LREFETELETIGSIRHRNIVSLHGYALSPYGNLLF 690 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~-~~-~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 690 (943)
..++|+..+.||+|+||+||+|.+. +++.||+|++..... .. .+.+..+...++.++||||+++++++.+++..++|
T Consensus 5 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~lv 84 (290)
T 3fme_A 5 KADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWIC 84 (290)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEEEE
T ss_pred cHHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEEEE
Confidence 3578999999999999999999975 688999999865432 22 22344555568888999999999999999999999
Q ss_pred EEEccCCChhhhccCC-CCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccC
Q 002278 691 YDYMVNGSLWDLLHGP-SKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIP 769 (943)
Q Consensus 691 ~e~~~~g~L~~~l~~~-~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~ 769 (943)
|||++ |+|.+++... .....+++..++.++.|++.||+|||+++ +|+||||||+||+++.++.+||+|||+++...
T Consensus 85 ~e~~~-~~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~--~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~ 161 (290)
T 3fme_A 85 MELMD-TSLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKL--SVIHRDVKPSNVLINALGQVKMCDFGISGYLV 161 (290)
T ss_dssp EECCS-EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHS--CCCCCCCSGGGCEECTTCCEEBCCC-------
T ss_pred Eehhc-cchHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhcC--CeecCCCCHHHEEECCCCCEEEeecCCccccc
Confidence 99997 5887776421 12456999999999999999999999842 89999999999999999999999999998765
Q ss_pred CCCCceeeeEecccceeCcccc----ccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCcc
Q 002278 770 TAMPHASTFVLGTIGYIDPEYA----HTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPE 845 (943)
Q Consensus 770 ~~~~~~~~~~~gt~~y~aPE~~----~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 845 (943)
.... .....||+.|+|||++ .+..++.++||||+||++|||+||+.||.................. .......
T Consensus 162 ~~~~--~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~~~-~~~~~~~ 238 (290)
T 3fme_A 162 DDVA--KDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQQLKQVVEEPS-PQLPADK 238 (290)
T ss_dssp ----------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCCCSCHHHHHHHHHHSCC-CCCCTTT
T ss_pred cccc--ccccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCccccCchHHHHHHHhccCC-CCccccc
Confidence 4322 2234589999999996 5667899999999999999999999999864433322222211111 0110111
Q ss_pred cccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 002278 846 VSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLV 885 (943)
Q Consensus 846 ~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~ 885 (943)
+ ...+.+++..|++.||++|||+.|+++|-+
T Consensus 239 ~---------~~~~~~li~~~l~~~p~~Rpt~~e~l~hp~ 269 (290)
T 3fme_A 239 F---------SAEFVDFTSQCLKKNSKERPTYPELMQHPF 269 (290)
T ss_dssp S---------CHHHHHHHHHHTCSSGGGSCCHHHHTTSHH
T ss_pred C---------CHHHHHHHHHHhhcChhhCcCHHHHHhCcc
Confidence 1 246789999999999999999999998654
No 265
>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}
Probab=100.00 E-value=3.3e-36 Score=335.65 Aligned_cols=256 Identities=22% Similarity=0.264 Sum_probs=200.7
Q ss_pred hhccccceEEeeeceEEEEEEEec-CCceEEEEEecccCc--ccHHHHHHHHHHHhcCCCCCcceeeeEEecCCc-----
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYP--HNLREFETELETIGSIRHRNIVSLHGYALSPYG----- 686 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~----- 686 (943)
.++|...+.||+|+||.||+|.++ +++.||||++..... ...+.+.+|+.+++.++||||+++++++.....
T Consensus 23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 102 (353)
T 3coi_A 23 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY 102 (353)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred CceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccce
Confidence 357889999999999999999976 588999999865432 234678899999999999999999999987654
Q ss_pred -ceEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccc
Q 002278 687 -NLLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIA 765 (943)
Q Consensus 687 -~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla 765 (943)
.++||||+. |+|.+++. ..+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||++
T Consensus 103 ~~~lv~e~~~-~~l~~~~~-----~~~~~~~~~~i~~qi~~al~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~Dfg~~ 173 (353)
T 3coi_A 103 DFYLVMPFMQ-TDLQKIMG-----LKFSEEKIQYLVYQMLKGLKYIHSA---GVVHRDLKPGNLAVNEDCELKILDFGLA 173 (353)
T ss_dssp CCEEEEECCS-EEGGGTTT-----SCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECTTCCEEECSTTCT
T ss_pred eEEEEecccc-CCHHHHhc-----CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEeECCCCcEEEeecccc
Confidence 499999997 68888774 2489999999999999999999999 9999999999999999999999999999
Q ss_pred cccCCCCCceeeeEecccceeCcccccc-CCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhcccccccc----
Q 002278 766 RCIPTAMPHASTFVLGTIGYIDPEYAHT-SRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVME---- 840 (943)
Q Consensus 766 ~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~---- 840 (943)
+..... .....||+.|+|||++.+ ..++.++||||+||++|||++|+.||.+......+.......+....
T Consensus 174 ~~~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~i~~~~~~~~~~~~~ 249 (353)
T 3coi_A 174 RHADAE----MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLDQLTQILKVTGVPGTEFVQ 249 (353)
T ss_dssp TC------------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSSCHHHHHHHHHHHHCBCCHHHHT
T ss_pred cCCCCC----ccccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhCCCCHHHHH
Confidence 865432 233468999999999887 67899999999999999999999999877655443333221111000
Q ss_pred ----------------ccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 002278 841 ----------------AVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLV 885 (943)
Q Consensus 841 ----------------~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~ 885 (943)
...+.+... .......+.+++.+|++.||++|||+.++++|-+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~hp~ 308 (353)
T 3coi_A 250 KLNDKAAKSYIQSLPQTPRKDFTQL--FPRASPQAADLLEKMLELDVDKRLTAAQALTHPF 308 (353)
T ss_dssp TCSCHHHHHHHHTSCBCSSCCTTTT--CTTSCHHHHHHHHHHSCSCTTTSCCHHHHHTSGG
T ss_pred HHhhHHHHHHHHhCcCCCCccHHHh--cCCcCHHHHHHHHHHcCCCcccCCCHHHHhcCcc
Confidence 000011000 0012356789999999999999999999999865
No 266
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*
Probab=100.00 E-value=7.7e-38 Score=351.14 Aligned_cols=256 Identities=10% Similarity=-0.014 Sum_probs=181.6
Q ss_pred hhccccceEEeeeceEEEEEEEec-CCceEEEEEecccCc---ccHHHHHHHH---HHHhcCCCCCcceee-------eE
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYP---HNLREFETEL---ETIGSIRHRNIVSLH-------GY 680 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~---~~~~~~~~E~---~~l~~l~h~niv~l~-------~~ 680 (943)
...|...+.||+|+||+||+|.+. +++.||||++..... ...+.+.+|+ +.++. +||||++++ ++
T Consensus 61 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~-~hp~iv~~~~~~~~p~d~ 139 (371)
T 3q60_A 61 ERKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLG-ESPEEARDRRRLLLPSDA 139 (371)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC-----------CBCCCCEE
T ss_pred ceeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcc-cChhhhhhceeEEeeehh
Confidence 456889999999999999999976 688999999976542 2345567774 45555 799987754 55
Q ss_pred EecCC-----------------cceEEEEEccCCChhhhccCCCCCccCCHHHH------HHHHHHHHHHHHHhhhCCCC
Q 002278 681 ALSPY-----------------GNLLFYDYMVNGSLWDLLHGPSKKVKLDWETR------LKIAVGAAQGLAYLHHDCNP 737 (943)
Q Consensus 681 ~~~~~-----------------~~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~------~~i~~~i~~~l~~LH~~~~~ 737 (943)
+..++ ..++||||++ |+|.+++... ...+++..+ ..++.|++.||+|||++
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~--~~~~~~~~~~~~~vk~~i~~qi~~aL~~LH~~--- 213 (371)
T 3q60_A 140 VAVQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTL--DFVYVFRGDEGILALHILTAQLIRLAANLQSK--- 213 (371)
T ss_dssp EEETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHH--HHSCCCCHHHHHHHHHHHHHHHHHHHHHHHHT---
T ss_pred eecCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHh--ccccchhhhhhhhhHHHHHHHHHHHHHHHHHC---
Confidence 54332 2699999998 8999999632 223455555 77889999999999999
Q ss_pred CeEecCCCCccEEECCCCceeecccccccccCCCCCceeeeEecccceeCcccccc--CCCCCcchhhhHHHHHHHHHhC
Q 002278 738 RIIHRDVKSSNILIDENFDAHLSDFGIARCIPTAMPHASTFVLGTIGYIDPEYAHT--SRLNEKSDVYSFGIVLLEILTG 815 (943)
Q Consensus 738 ~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~DvwSlGvil~elltG 815 (943)
+|+||||||+|||++.++.+||+|||+|+..... .....||+.|+|||++.+ ..++.++|||||||++|||+||
T Consensus 214 ~ivHrDikp~NIll~~~~~~kL~DFG~a~~~~~~----~~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~elltg 289 (371)
T 3q60_A 214 GLVHGHFTPDNLFIMPDGRLMLGDVSALWKVGTR----GPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCL 289 (371)
T ss_dssp TEEETTCSGGGEEECTTSCEEECCGGGEEETTCE----EEGGGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHHHHHS
T ss_pred CCccCcCCHHHEEECCCCCEEEEecceeeecCCC----ccCccCCcCCcChhhccCCCCCcCccccHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999866432 113347799999999987 6799999999999999999999
Q ss_pred CCCCCCCccHHHHHHHhccccccccccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 002278 816 KKAVDNESNLHQLIMSKADDNTVMEAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLV 885 (943)
Q Consensus 816 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~ 885 (943)
+.||......... ................... .......+.+++..||+.||++|||+.++++|-+
T Consensus 290 ~~Pf~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~ 355 (371)
T 3q60_A 290 FLPFGLVTPGIKG---SWKRPSLRVPGTDSLAFGS-CTPLPDFVKTLIGRFLNFDRRRRLLPLEAMETPE 355 (371)
T ss_dssp SCSTTBCCTTCTT---CCCBCCTTSCCCCSCCCTT-SSCCCHHHHHHHHHHTCSSTTTCCCHHHHTTSHH
T ss_pred CCCCCCcCccccc---chhhhhhhhccccccchhh-ccCCCHHHHHHHHHHcCCChhhCCCHHHHhcCHH
Confidence 9999865321000 0000000000000000000 0011256789999999999999999999987643
No 267
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}
Probab=100.00 E-value=5.4e-37 Score=352.77 Aligned_cols=256 Identities=19% Similarity=0.227 Sum_probs=203.2
Q ss_pred hhccccceEEeeeceEEEEEEEec-CCceEEEEEecccCcccHHHHHHHHHHHhcCCC-CCcceeeeEEecCCcceEEEE
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYPHNLREFETELETIGSIRH-RNIVSLHGYALSPYGNLLFYD 692 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h-~niv~l~~~~~~~~~~~lv~e 692 (943)
.++|...+.||+|+||.||+|.+. +++.||||++..... ...+.+|+++++.++| +++..+..++...+..++|||
T Consensus 6 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~--~~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~lvme 83 (483)
T 3sv0_A 6 GNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTK--HPQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLVMD 83 (483)
T ss_dssp TTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCS--SCCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEEEEE
T ss_pred CCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEeccccc--cHHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEEEEE
Confidence 468999999999999999999974 688999998764432 2457889999999987 566666667777788899999
Q ss_pred EccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEE---CCCCceeecccccccccC
Q 002278 693 YMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILI---DENFDAHLSDFGIARCIP 769 (943)
Q Consensus 693 ~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill---~~~~~~kl~DFGla~~~~ 769 (943)
|+ +++|.+++... ...+++.+++.++.||+.||+|||++ +||||||||+|||+ +.++.+||+|||+++.+.
T Consensus 84 ~~-g~sL~~ll~~~--~~~l~~~~~~~i~~qi~~aL~yLH~~---gIvHrDIKP~NILl~~~~~~~~vkL~DFGla~~~~ 157 (483)
T 3sv0_A 84 LL-GPSLEDLFNFC--SRKLSLKTVLMLADQMINRVEFVHSK---SFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYR 157 (483)
T ss_dssp CC-CCBHHHHHHHT--TTCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECCGGGTTCEEECCCTTCEECB
T ss_pred CC-CCCHHHHHHhh--cCCCCHHHHHHHHHHHHHHHHHHHHC---CEeecccCcceEEEecCCCCCeEEEEeCCcceecc
Confidence 99 99999999632 34699999999999999999999999 99999999999999 688999999999998775
Q ss_pred CCCCc------eeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCcc--HHH-HHHHhccc-cccc
Q 002278 770 TAMPH------ASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESN--LHQ-LIMSKADD-NTVM 839 (943)
Q Consensus 770 ~~~~~------~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~--~~~-~~~~~~~~-~~~~ 839 (943)
..... ......||+.|+|||++.+..++.++|||||||++|||++|+.||.+... ... +....... ....
T Consensus 158 ~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~~~~~~~~~i~~~~~~~~~ 237 (483)
T 3sv0_A 158 DTSTHQHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKISEKKVATSI 237 (483)
T ss_dssp CTTTCCBCCCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSHHHHHHHHHHHHHHSCH
T ss_pred CCccccccccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccchhHHHHHHHHhhccccccH
Confidence 44322 12245699999999999999999999999999999999999999986432 111 11111100 0011
Q ss_pred cccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhc
Q 002278 840 EAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSL 887 (943)
Q Consensus 840 ~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~ 887 (943)
+.+...+ ...+.+++..||+.||++||++.++++.|+.+
T Consensus 238 ~~l~~~~---------p~~l~~li~~cl~~dP~~RPs~~el~~~L~~l 276 (483)
T 3sv0_A 238 EALCRGY---------PTEFASYFHYCRSLRFDDKPDYSYLKRLFRDL 276 (483)
T ss_dssp HHHHTTS---------CHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHH
T ss_pred HHHhcCC---------cHHHHHHHHHHhcCChhhCcCHHHHHHHHHHH
Confidence 1111111 24678999999999999999999999988776
No 268
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Probab=100.00 E-value=1e-36 Score=333.86 Aligned_cols=257 Identities=23% Similarity=0.286 Sum_probs=201.1
Q ss_pred HHhhccccceEEeeeceEEEEEEEecCCceEEEEEecccC--cccHHHHHHHHHHHhcCC--CCCcceeeeEEecCCcce
Q 002278 613 RSTENLSEKYIVGYGASSTVYKCALKNSRPIAVKKLYNQY--PHNLREFETELETIGSIR--HRNIVSLHGYALSPYGNL 688 (943)
Q Consensus 613 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~--h~niv~l~~~~~~~~~~~ 688 (943)
...++|+..+.||+|+||.||+|.+++++.||+|++.... ....+.+.+|++++++++ ||||+++++++..+...+
T Consensus 25 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~ 104 (313)
T 3cek_A 25 VKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIY 104 (313)
T ss_dssp ETTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEECSSEEE
T ss_pred eccceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEeecCCEEE
Confidence 3467899999999999999999999889999999986443 334567889999999997 599999999999999999
Q ss_pred EEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeeccccccccc
Q 002278 689 LFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCI 768 (943)
Q Consensus 689 lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~ 768 (943)
+||| +.+++|.+++. ....+++..+..++.|++.||+|||+. +|+||||||+||++++ +.+||+|||+++..
T Consensus 105 lv~e-~~~~~L~~~l~---~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~~-~~~kL~Dfg~~~~~ 176 (313)
T 3cek_A 105 MVME-CGNIDLNSWLK---KKKSIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIVD-GMLKLIDFGIANQM 176 (313)
T ss_dssp EEEC-CCSEEHHHHHH---HCSSCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEET-TEEEECCCSSSCC-
T ss_pred EEEe-cCCCcHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCcccEEEEC-CeEEEeeccccccc
Confidence 9999 66889999997 345689999999999999999999999 9999999999999964 89999999999876
Q ss_pred CCCCCc-eeeeEecccceeCcccccc-----------CCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhcccc
Q 002278 769 PTAMPH-ASTFVLGTIGYIDPEYAHT-----------SRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDN 836 (943)
Q Consensus 769 ~~~~~~-~~~~~~gt~~y~aPE~~~~-----------~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~ 836 (943)
...... ......||+.|+|||++.+ ..++.++|||||||++|||++|+.||.................
T Consensus 177 ~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~ 256 (313)
T 3cek_A 177 QPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIINQISKLHAIIDPN 256 (313)
T ss_dssp -------------CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHCTT
T ss_pred cCccccccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHhcc
Confidence 443221 1233468999999999875 4688899999999999999999999986544332222221111
Q ss_pred ccccccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhc
Q 002278 837 TVMEAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSL 887 (943)
Q Consensus 837 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~ 887 (943)
. ...++... ...+.+++..||+.||++||++.|++++.+-.
T Consensus 257 ~-----~~~~~~~~-----~~~l~~li~~~l~~dp~~Rps~~ell~h~~~~ 297 (313)
T 3cek_A 257 H-----EIEFPDIP-----EKDLQDVLKCCLKRDPKQRISIPELLAHPYVQ 297 (313)
T ss_dssp S-----CCCCCCCS-----CHHHHHHHHHHTCSSTTTSCCHHHHHTSHHHH
T ss_pred c-----ccCCcccc-----hHHHHHHHHHHccCCcccCcCHHHHhcCcccc
Confidence 1 01111111 14677899999999999999999999987643
No 269
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=3.9e-36 Score=358.72 Aligned_cols=349 Identities=20% Similarity=0.232 Sum_probs=214.7
Q ss_pred ccCCCCCCCCCCCCCC----cceeEecCCCCcEEEEEcCCCCCccccCCCcCCCCCCCEEEeeCCcccccCCCCccCCCC
Q 002278 12 NVLLDWDDVHNSDFCS----WRGVFCDNSSLSVVSLNLSSLNLGGEISPSIGDLRNLQSIDFQGNKLTGQIPDEIGNCGS 87 (943)
Q Consensus 12 ~~~~~w~~~~~~~~c~----w~gv~c~~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 87 (943)
..+++|.. +.+||. |.++.|+.. ++-...... .+..--.+.+++.|++++|.++...+..|.++++
T Consensus 7 ~~l~~~~~--~~~C~~~~~~~~c~~~~~~------i~~~~~~~~--~~~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~ 76 (597)
T 3oja_B 7 YNVKPRQP--EYKCIDSNLQYDCVFYDVH------IDMQTQDVY--FGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQ 76 (597)
T ss_dssp ----CCCS--EECCCCC--CCSEEECSCE------ECSSCCCCE--ESCSSGGGCCCSEEEESSCEESEECTHHHHHCCC
T ss_pred ccccCCCC--CCcCcccCcCceeEecCce------ecccccccc--cCcccccCCCceEEEeeCCCCCCcCHHHHccCCC
Confidence 36788975 567874 777766521 122111111 1112224677888888888888554455778888
Q ss_pred CcEEeccCCCcCCccchhccccccceEEEecCcccccCCCcccCCCCCCcEEEEeccccccccchhccccccceeccccC
Q 002278 88 LVHIELSDNSLYGDIPFSISKLKQLEFLNLKNNQLTGPIPSTLTQIPNLKTLDLARNQLTGEIPRLIYWNEVLQYLGLRG 167 (943)
Q Consensus 88 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 167 (943)
|++|+|++|.+++..|..|+.+++|++|+|++|.+++..|..|+++++|++|+|++|.|++.++..|..+++|++|+|++
T Consensus 77 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~ 156 (597)
T 3oja_B 77 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSN 156 (597)
T ss_dssp CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeC
Confidence 88888888888876667888888888888888888877777788888888888888888765555566677777777777
Q ss_pred CccCCCCCcccccccccceeeccceecccccCCCCcCCCcccEEEeecccccCcCCCCCCcceEeEEEecCccccccCCc
Q 002278 168 NALTGMLSPDMCQLTGLWYFDVRGNNLTGTIPDSIGNCTSFEILDISYNQITGEIPYNIGFLQVATLSLQGNKLTGKIPE 247 (943)
Q Consensus 168 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 247 (943)
|.++++++..|..+++|++|+|++|.+++. .+..+++|+.|++++|.+++
T Consensus 157 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~--------------------------- 206 (597)
T 3oja_B 157 NNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST--------------------------- 206 (597)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSE---------------------------
T ss_pred CcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCcccc---------------------------
Confidence 777766666666666666666666666643 23445556666666655542
Q ss_pred cccccCCCcEEecCCCCCCCCCCcccCCCCCcceEEecCCCCCCCCCCCcCCCCcCcEEEcccCccccccccccCCcccc
Q 002278 248 VIGLMQALAVLDLSENELVGPIPPILGNLSYTGKLYLHGNKLTGPIPPELGNMSKLSYLQLQNNQLVGTIPAELGKLEQL 327 (943)
Q Consensus 248 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 327 (943)
+....+|+.|++++|.+....+.. .++|+.|+|++|.+++ +..+..+++|
T Consensus 207 -l~~~~~L~~L~ls~n~l~~~~~~~---------------------------~~~L~~L~L~~n~l~~--~~~l~~l~~L 256 (597)
T 3oja_B 207 -LAIPIAVEELDASHNSINVVRGPV---------------------------NVELTILKLQHNNLTD--TAWLLNYPGL 256 (597)
T ss_dssp -EECCTTCSEEECCSSCCCEEECSC---------------------------CSCCCEEECCSSCCCC--CGGGGGCTTC
T ss_pred -ccCCchhheeeccCCccccccccc---------------------------CCCCCEEECCCCCCCC--ChhhccCCCC
Confidence 112234555555555554221111 1344455555555443 2344555555
Q ss_pred eEEEccccccCCcCcccccCCCcCcEEEeeCCcccCcccccccccCccceeeccCCcCCCCCCCCCCCCCCccEEecCCC
Q 002278 328 FELNLADNNLEGPIPHNISSCTALNQFNVHGNRLSGAIPSSFRNLGSLTYLNLSRNNFKGKVPTELGRIINLDTLDLSVN 407 (943)
Q Consensus 328 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N 407 (943)
+.|+|++|.+.+.+|..|..+++|+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|
T Consensus 257 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N 334 (597)
T 3oja_B 257 VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHN 334 (597)
T ss_dssp SEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSS
T ss_pred CEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCC
Confidence 555555555555555555555555555555555553 3444555666666666666666 45555666666667777777
Q ss_pred cCCCccCCCcccccccceeecccccccc
Q 002278 408 NFSGSVPASIGDLEHLLTLNLSRNHLNG 435 (943)
Q Consensus 408 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 435 (943)
.|++. + +..+++|+.|+|++|.+.+
T Consensus 335 ~l~~~-~--~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 335 SIVTL-K--LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp CCCCC-C--CCTTCCCSEEECCSSCEEH
T ss_pred CCCCc-C--hhhcCCCCEEEeeCCCCCC
Confidence 66643 2 5566778888888888764
No 270
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition state, activation helix, serine/threonine-PR kinase; HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Probab=100.00 E-value=6e-37 Score=339.88 Aligned_cols=257 Identities=23% Similarity=0.325 Sum_probs=200.6
Q ss_pred HhhccccceEEeeeceEEEEEEEec-CCceEEEEEecccC-cccHHHHHHHHHH-HhcCCCCCcceeeeEEecCCcceEE
Q 002278 614 STENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQY-PHNLREFETELET-IGSIRHRNIVSLHGYALSPYGNLLF 690 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~-l~~l~h~niv~l~~~~~~~~~~~lv 690 (943)
..++|+..+.||+|+||.||+|... +++.||||++.... .....++..|..+ ++.++||||+++++++.+++..++|
T Consensus 49 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~~~~~~~~~~~~~lv 128 (340)
T 3an0_A 49 KADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWIC 128 (340)
T ss_dssp CSSCEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCCCCHHHHHHHHHHHHHHTTCCCTTTCCEEEEEECSSCEEEE
T ss_pred ehhheeEeeEecccCCEEEEEEEEcCCCCEEEEEEeccccCcHHHHHHHHHHHHHHhhcCCCcEEEEeeEEEeCCcEEEE
Confidence 4567889999999999999999975 68899999986543 2334455566665 7888999999999999999999999
Q ss_pred EEEccCCChhhhccCC-CCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccC
Q 002278 691 YDYMVNGSLWDLLHGP-SKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIP 769 (943)
Q Consensus 691 ~e~~~~g~L~~~l~~~-~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~ 769 (943)
|||+++ +|.+++... .....+++..+..++.|++.||+|||+++ +|+||||||+||+++.++.+||+|||+++...
T Consensus 129 ~e~~~~-~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~--~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~ 205 (340)
T 3an0_A 129 MELMDT-SLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKL--SVIHRDVKPSNVLINALGQVKMCDFGISGYLV 205 (340)
T ss_dssp ECCCSE-EHHHHHHHHHHTSCCCCHHHHHHHHHHHHHHHHHHHHHT--CCCCCSCCSTTEEECSTTCEEECCCSHHHHHS
T ss_pred HHHhhC-cHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhcC--CeecCCCCHHHEEECCCCCEEEeeCCCceecc
Confidence 999975 898887521 12457999999999999999999999732 89999999999999999999999999998764
Q ss_pred CCCCceeeeEecccceeCccccc----cCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCcc
Q 002278 770 TAMPHASTFVLGTIGYIDPEYAH----TSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPE 845 (943)
Q Consensus 770 ~~~~~~~~~~~gt~~y~aPE~~~----~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 845 (943)
... ......||+.|+|||++. +..++.++|||||||++|||+||+.||................. .+.
T Consensus 206 ~~~--~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~tg~~p~~~~~~~~~~~~~~~~~~------~~~ 277 (340)
T 3an0_A 206 DSV--AKTIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQQLKQVVEEP------SPQ 277 (340)
T ss_dssp CHH--HHHHSSCCCCCCCHHHHSCCTTCCSCCHHHHHHHHHHHHHHHHHTSCSSCCCSCHHHHHHHHHHSC------CCC
T ss_pred ccc--ccccCCCCccccCccccccccccCCCCchhhHHHHHHHHHHHHHCCCCCccccchHHHHHHHhcCC------CCC
Confidence 321 122235899999999964 34789999999999999999999999986443322222211111 111
Q ss_pred cccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 002278 846 VSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLV 885 (943)
Q Consensus 846 ~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~ 885 (943)
.... .....+.+++..||+.||++|||+.+++++-+
T Consensus 278 ~~~~----~~~~~~~~li~~~l~~dp~~Rps~~ell~hp~ 313 (340)
T 3an0_A 278 LPAD----KFSAEFVDFTSQCLKKNSKERPTYPELMQHPF 313 (340)
T ss_dssp CCGG----GSCHHHHHHHHHHTCSSGGGSCCHHHHTTSHH
T ss_pred CCcc----cCCHHHHHHHHHHccCCcccCcCHHHHhcCcC
Confidence 1100 11246789999999999999999999998755
No 271
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
Probab=100.00 E-value=1.2e-36 Score=336.14 Aligned_cols=253 Identities=19% Similarity=0.239 Sum_probs=175.0
Q ss_pred Hhhccccc-eEEeeeceEEEEEEEec-CCceEEEEEecccCcccHHHHHHHHHHHhcCCCCCcceeeeEEec----CCcc
Q 002278 614 STENLSEK-YIVGYGASSTVYKCALK-NSRPIAVKKLYNQYPHNLREFETELETIGSIRHRNIVSLHGYALS----PYGN 687 (943)
Q Consensus 614 ~~~~~~~~-~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~----~~~~ 687 (943)
..++|... ++||+|+||+||+|.++ +++.||+|++... ..........++.++||||+++++++.. ....
T Consensus 26 ~~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~----~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~ 101 (336)
T 3fhr_A 26 VTDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDS----PKARQEVDHHWQASGGPHIVCILDVYENMHHGKRCL 101 (336)
T ss_dssp GGGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESS----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEE
T ss_pred ccceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCc----HHHHHHHHHHHHhcCCCChHHHHHHHhhccCCCceE
Confidence 35678885 46999999999999987 5889999998643 1222223334667799999999999876 3447
Q ss_pred eEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECC---CCceeeccccc
Q 002278 688 LLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDE---NFDAHLSDFGI 764 (943)
Q Consensus 688 ~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~---~~~~kl~DFGl 764 (943)
++||||+++|+|.+++... ....+++.+++.++.|++.||+|||++ +|+||||||+||+++. ++.+||+|||+
T Consensus 102 ~lv~e~~~gg~L~~~l~~~-~~~~l~~~~~~~i~~ql~~~l~~LH~~---~ivH~dlkp~NIll~~~~~~~~~kl~Dfg~ 177 (336)
T 3fhr_A 102 LIIMECMEGGELFSRIQER-GDQAFTEREAAEIMRDIGTAIQFLHSH---NIAHRDVKPENLLYTSKEKDAVLKLTDFGF 177 (336)
T ss_dssp EEEEECCTTEEHHHHHHTC--CCCCBHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSTTCCEEECCCTT
T ss_pred EEEEeccCCCCHHHHHHhc-CCCCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEEecCCCceEEEecccc
Confidence 8999999999999999743 234699999999999999999999999 9999999999999976 45599999999
Q ss_pred ccccCCCCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHH----hcccccccc
Q 002278 765 ARCIPTAMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMS----KADDNTVME 840 (943)
Q Consensus 765 a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~----~~~~~~~~~ 840 (943)
++...... .....||+.|+|||++.+..++.++|||||||++|+|++|+.||............ .........
T Consensus 178 ~~~~~~~~---~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (336)
T 3fhr_A 178 AKETTQNA---LQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISPGMKRRIRLGQYGFPN 254 (336)
T ss_dssp CEEC-------------------------CHHHHHHHHHHHHHHHHHHHHSSCCC---------------------CCCT
T ss_pred ceeccccc---cccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCccchhhhhhHHHhhhccccccCc
Confidence 98664332 23346899999999998888999999999999999999999999754432211000 000000011
Q ss_pred ccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhh
Q 002278 841 AVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVS 886 (943)
Q Consensus 841 ~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~ 886 (943)
.... .....+.+++..|++.||++|||+.|++++-+-
T Consensus 255 ~~~~---------~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~~ 291 (336)
T 3fhr_A 255 PEWS---------EVSEDAKQLIRLLLKTDPTERLTITQFMNHPWI 291 (336)
T ss_dssp TTST---------TCCHHHHHHHHHHSCSSGGGSCCHHHHHHSHHH
T ss_pred hhhc---------cCCHHHHHHHHHHCCCChhHCcCHHHHhcCccc
Confidence 0001 112467789999999999999999999998764
No 272
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=3.5e-36 Score=340.29 Aligned_cols=335 Identities=19% Similarity=0.185 Sum_probs=218.2
Q ss_pred CCCCcEEEEeccccccccchhccccccceeccccCCccCCCCCcccccccccceeeccceecccccCCCCcCCCcccEEE
Q 002278 133 IPNLKTLDLARNQLTGEIPRLIYWNEVLQYLGLRGNALTGMLSPDMCQLTGLWYFDVRGNNLTGTIPDSIGNCTSFEILD 212 (943)
Q Consensus 133 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~ 212 (943)
+++|+.|++++|.++...+..|..+++|++|+|++|.++++.+..|..+++|++|+|++|++++..|..|.++++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 56777777777777754444455566666666666666655555555555555555555555544444455555555555
Q ss_pred eecccccCcCCCCCCcceEeEEEecCccccccCCccccccCCCcEEecCCCCCCCCCCcccCCCCCcceEEecCCCCCCC
Q 002278 213 ISYNQITGEIPYNIGFLQVATLSLQGNKLTGKIPEVIGLMQALAVLDLSENELVGPIPPILGNLSYTGKLYLHGNKLTGP 292 (943)
Q Consensus 213 Ls~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 292 (943)
|++|+++. ..+..|..+++|++|++++|.+.+.
T Consensus 124 L~~n~l~~-----------------------l~~~~~~~l~~L~~L~L~~n~l~~~------------------------ 156 (390)
T 3o6n_A 124 LERNDLSS-----------------------LPRGIFHNTPKLTTLSMSNNNLERI------------------------ 156 (390)
T ss_dssp CCSSCCCC-----------------------CCTTTTTTCTTCCEEECCSSCCCBC------------------------
T ss_pred CCCCccCc-----------------------CCHHHhcCCCCCcEEECCCCccCcc------------------------
Confidence 55544431 1112234445555555555555444
Q ss_pred CCCCcCCCCcCcEEEcccCccccccccccCCcccceEEEccccccCCcCcccccCCCcCcEEEeeCCcccCccccccccc
Q 002278 293 IPPELGNMSKLSYLQLQNNQLVGTIPAELGKLEQLFELNLADNNLEGPIPHNISSCTALNQFNVHGNRLSGAIPSSFRNL 372 (943)
Q Consensus 293 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 372 (943)
.+..|..+++|++|++++|++++. .+..+++|+.|++++|.+++. ...++|+.|++++|.+... |.. ..
T Consensus 157 ~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l~~n~l~~~-~~~--~~ 225 (390)
T 3o6n_A 157 EDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDASHNSINVV-RGP--VN 225 (390)
T ss_dssp CTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE-----ECCSSCSEEECCSSCCCEE-ECC--CC
T ss_pred ChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccccc-----CCCCcceEEECCCCeeeec-ccc--cc
Confidence 444445555555555555555432 133445555555555555421 2234566666666666643 222 23
Q ss_pred CccceeeccCCcCCCCCCCCCCCCCCccEEecCCCcCCCccCCCcccccccceeecccccccccCCccccCCCccceecc
Q 002278 373 GSLTYLNLSRNNFKGKVPTELGRIINLDTLDLSVNNFSGSVPASIGDLEHLLTLNLSRNHLNGLLPAEFGNLRSIQTIDM 452 (943)
Q Consensus 373 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 452 (943)
++|+.|++++|.+++. ..+..+++|+.|++++|.+++..|..|..+++|+.|+|++|++++ +|..+..+++|++|+|
T Consensus 226 ~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L 302 (390)
T 3o6n_A 226 VELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDL 302 (390)
T ss_dssp SSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEEC
T ss_pred ccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEEC
Confidence 6778888888887743 467788888888888888887778888889999999999999985 5666788899999999
Q ss_pred cCccccccCChhhhcccccceecccCcccCCCCCCcCccccCCcccccCCccccccCCCCcccCcCCCCccccCCCCCCC
Q 002278 453 SFNQLSGSIPAELGQLQNIISLILNNNNLQGGIPDQLSNCFSLSNLNVSYNNLSGIIPPIRNFSRFSSNSFIGNPLLCGN 532 (943)
Q Consensus 453 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~~~~~~~~Np~~c~~ 532 (943)
++|+++ .+|..+..+++|+.|+|++|++++. | +..+++|+.|++++|++++.... ..+..+....+.+++..|+.
T Consensus 303 ~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c~~ 377 (390)
T 3o6n_A 303 SHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKI 377 (390)
T ss_dssp CSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCSCCCT
T ss_pred CCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHH-HHHHHHHhhcccccCceecc
Confidence 999998 6788899999999999999999854 3 67889999999999999874221 23445555667888888875
Q ss_pred C
Q 002278 533 W 533 (943)
Q Consensus 533 ~ 533 (943)
+
T Consensus 378 ~ 378 (390)
T 3o6n_A 378 D 378 (390)
T ss_dssp T
T ss_pred c
Confidence 4
No 273
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}
Probab=100.00 E-value=3.5e-37 Score=338.60 Aligned_cols=260 Identities=21% Similarity=0.321 Sum_probs=202.1
Q ss_pred HHhhccccceEEeeeceEEEEEEEecCCceEEEEEecccC--cccHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEE
Q 002278 613 RSTENLSEKYIVGYGASSTVYKCALKNSRPIAVKKLYNQY--PHNLREFETELETIGSIRHRNIVSLHGYALSPYGNLLF 690 (943)
Q Consensus 613 ~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 690 (943)
...++|+..+.||+|+||.||+|.++. .||+|++.... ....+.+.+|+++++.++||||+++++++.+....++|
T Consensus 30 i~~~~~~~~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~iv 107 (319)
T 2y4i_B 30 IPFEQLEIGELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPHLAII 107 (319)
T ss_dssp SCCSCEECCCBCCCSSSSEEEEEEESS--SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEECSSCEEEE
T ss_pred CCHHHeEEeeEeccCCceEEEEEEEcC--eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCceEEE
Confidence 346789999999999999999998764 59999886432 23345678899999999999999999999999999999
Q ss_pred EEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccCC
Q 002278 691 YDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIPT 770 (943)
Q Consensus 691 ~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~~ 770 (943)
|||+++++|.+++.. ....+++.++..++.|++.||+|||++ +|+||||||+||+++ ++.+||+|||+++....
T Consensus 108 ~e~~~~~~L~~~l~~--~~~~~~~~~~~~i~~qi~~al~~lH~~---~i~H~dlkp~NIl~~-~~~~~l~Dfg~~~~~~~ 181 (319)
T 2y4i_B 108 TSLCKGRTLYSVVRD--AKIVLDVNKTRQIAQEIVKGMGYLHAK---GILHKDLKSKNVFYD-NGKVVITDFGLFSISGV 181 (319)
T ss_dssp CBCCCSEEHHHHTTS--SCCCCCSHHHHHHHHHHHHHHHHHHHT---TCCCCCCCSTTEEEC---CCEECCCSCCC----
T ss_pred eecccCCcHHHHHHh--cCCCCCHHHHHHHHHHHHHHHHHHHhC---CccccCCChhhEEEe-CCCEEEeecCCcccccc
Confidence 999999999999964 234689999999999999999999999 999999999999998 67999999999876532
Q ss_pred CC----CceeeeEecccceeCcccccc---------CCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccc
Q 002278 771 AM----PHASTFVLGTIGYIDPEYAHT---------SRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNT 837 (943)
Q Consensus 771 ~~----~~~~~~~~gt~~y~aPE~~~~---------~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~ 837 (943)
.. ........|++.|+|||++.+ ..++.++|||||||++|||++|+.||..................
T Consensus 182 ~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~~ 261 (319)
T 2y4i_B 182 LQAGRREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQPAEAIIWQMGTGMKP 261 (319)
T ss_dssp ------CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSCCHHHHHHHHHTTCCC
T ss_pred ccccccccccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHHHHHHhccCCCC
Confidence 11 112223458999999998874 35788999999999999999999999876544333222221111
Q ss_pred cccccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCCCC
Q 002278 838 VMEAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLPAP 891 (943)
Q Consensus 838 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~~~ 891 (943)
......++ ..+.+++..||+.||++|||+.++++.|+.+....
T Consensus 262 --~~~~~~~~---------~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~l~~~~ 304 (319)
T 2y4i_B 262 --NLSQIGMG---------KEISDILLFCWAFEQEERPTFTKLMDMLEKLPKRN 304 (319)
T ss_dssp --CCCCSSCC---------TTHHHHHHHHHCSSTTTSCCHHHHHHHHTTC----
T ss_pred --CCCcCCCC---------HHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhh
Confidence 11111111 34678999999999999999999999999877654
No 274
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*
Probab=100.00 E-value=8.3e-37 Score=346.59 Aligned_cols=262 Identities=21% Similarity=0.214 Sum_probs=200.5
Q ss_pred hhccccceEEeeeceEEEEEEEec-CCceEEEEEecccCcccHHHHHHHHHHHhcCC--------CCCcceeeeEEe---
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYPHNLREFETELETIGSIR--------HRNIVSLHGYAL--- 682 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~--------h~niv~l~~~~~--- 682 (943)
.++|+..+.||+|+||+||+|++. +++.||||++... ....+.+.+|+++++.++ ||||+++++++.
T Consensus 36 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~ 114 (397)
T 1wak_A 36 NGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSA-EHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISG 114 (397)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEE
T ss_pred CCeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecC-CcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecC
Confidence 468999999999999999999975 5788999998643 334567889999999885 788999999987
Q ss_pred -cCCcceEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCC------
Q 002278 683 -SPYGNLLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENF------ 755 (943)
Q Consensus 683 -~~~~~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~------ 755 (943)
.....++||||+ ++++.+.+... ....+++..+..++.|++.||+|||+++ +|+||||||+|||++.++
T Consensus 115 ~~~~~~~lv~e~~-~~~l~~~~~~~-~~~~~~~~~~~~i~~qi~~aL~~lH~~~--givHrDikp~NIll~~~~~~~~~~ 190 (397)
T 1wak_A 115 VNGTHICMVFEVL-GHHLLKWIIKS-NYQGLPLPCVKKIIQQVLQGLDYLHTKC--RIIHTDIKPENILLSVNEQYIRRL 190 (397)
T ss_dssp TTEEEEEEEECCC-CCBHHHHHHHT-TTSCCCHHHHHHHHHHHHHHHHHHHHTT--CEECCCCSGGGEEECCCHHHHHHH
T ss_pred CCCceEEEEEecc-CccHHHHHHhc-ccCCCCHHHHHHHHHHHHHHHHHHHHhC--CEecCCCCHHHeeEeccchhhhhh
Confidence 556789999999 66666665422 2346899999999999999999999853 899999999999999775
Q ss_pred -------------------------------------------ceeecccccccccCCCCCceeeeEecccceeCccccc
Q 002278 756 -------------------------------------------DAHLSDFGIARCIPTAMPHASTFVLGTIGYIDPEYAH 792 (943)
Q Consensus 756 -------------------------------------------~~kl~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~ 792 (943)
.+||+|||+++...... ....||+.|+|||++.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~~----~~~~gt~~y~aPE~~~ 266 (397)
T 1wak_A 191 AAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKHF----TEDIQTRQYRSLEVLI 266 (397)
T ss_dssp HHHHC---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBCS----CSCCSCGGGCCHHHHH
T ss_pred hhhhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEeccccccccccccC----ccCCCCCcccCChhhc
Confidence 79999999998764332 2245899999999999
Q ss_pred cCCCCCcchhhhHHHHHHHHHhCCCCCCCCcc------HHHHHHHhccccccccc-----------cC-----ccc----
Q 002278 793 TSRLNEKSDVYSFGIVLLEILTGKKAVDNESN------LHQLIMSKADDNTVMEA-----------VD-----PEV---- 846 (943)
Q Consensus 793 ~~~~~~~~DvwSlGvil~elltG~~p~~~~~~------~~~~~~~~~~~~~~~~~-----------~~-----~~~---- 846 (943)
+..++.++|||||||++|||+||+.||..... ...........+..+.. .. ..+
T Consensus 267 ~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (397)
T 1wak_A 267 GSGYNTPADIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLK 346 (397)
T ss_dssp TSCCCTHHHHHHHHHHHHHHHHSSCSCCCCCCSSSCHHHHHHHHHHHHHCSCCHHHHHHCTTGGGTBCTTSSBSSCCCCC
T ss_pred CCCCCcHHHHHHHHHHHHHHhhCCCCCCCCcccccCchHHHHHHHHHhcCCCChHHhhcccccccccCCccccccccccC
Confidence 99999999999999999999999999975431 11111111111110000 00 000
Q ss_pred ---------ccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 002278 847 ---------SVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLV 885 (943)
Q Consensus 847 ---------~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~ 885 (943)
............+.+++.+||+.||++|||+.|+++|-+
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~ 394 (397)
T 1wak_A 347 PWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLRHPW 394 (397)
T ss_dssp CCCHHHHHHHTSCCCHHHHHHHHHHHGGGGCSSGGGSCCHHHHHTSGG
T ss_pred CcchhHhhhhhcccchhhHHHHHHHHHHHhccChhhcCCHHHHhhCcc
Confidence 000112345567889999999999999999999998754
No 275
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*
Probab=100.00 E-value=1.8e-36 Score=346.61 Aligned_cols=254 Identities=24% Similarity=0.298 Sum_probs=190.1
Q ss_pred ccccceEEeeeceEEEEEEEecCCceEEEEEecccCcccHHHHHHHHHHHhcC-CCCCcceeeeEEecCCcceEEEEEcc
Q 002278 617 NLSEKYIVGYGASSTVYKCALKNSRPIAVKKLYNQYPHNLREFETELETIGSI-RHRNIVSLHGYALSPYGNLLFYDYMV 695 (943)
Q Consensus 617 ~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e~~~ 695 (943)
.|...+.||+|+||+||.+...+++.||||++... ..+.+.+|+++++.+ +|||||++++++.++...++||||+.
T Consensus 16 ~~~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~---~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~lv~E~~~ 92 (434)
T 2rio_A 16 LVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLID---FCDIALMEIKLLTESDDHPNVIRYYCSETTDRFLYIALELCN 92 (434)
T ss_dssp CEEEEEEEEECSTTCEEEEEESSSSEEEEEEEEGG---GHHHHHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEECCCS
T ss_pred eeeccCeEeeCCCeEEEEEEEECCeEEEEEEEcHH---HHHHHHHHHHHHHhccCCCCcCeEEEEEecCCeEEEEEecCC
Confidence 45556889999999998776677999999998643 345678899999876 89999999999999999999999995
Q ss_pred CCChhhhccCCCCCc----cCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCC-------------Ccee
Q 002278 696 NGSLWDLLHGPSKKV----KLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDEN-------------FDAH 758 (943)
Q Consensus 696 ~g~L~~~l~~~~~~~----~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~-------------~~~k 758 (943)
|+|.+++....... ...+..++.++.||+.||+|||+. +|+||||||+||+++.+ +.+|
T Consensus 93 -gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~~k 168 (434)
T 2rio_A 93 -LNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHSL---KIIHRDLKPQNILVSTSSRFTADQQTGAENLRIL 168 (434)
T ss_dssp -EEHHHHHHTC------------CCHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEECCHHHHSCCTTCCCSCEEE
T ss_pred -CCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEecCcccccccccCCCceEEE
Confidence 69999997432211 113335678999999999999999 99999999999999754 4899
Q ss_pred ecccccccccCCCCCc---eeeeEecccceeCcccccc-------CCCCCcchhhhHHHHHHHHHh-CCCCCCCCccHHH
Q 002278 759 LSDFGIARCIPTAMPH---ASTFVLGTIGYIDPEYAHT-------SRLNEKSDVYSFGIVLLEILT-GKKAVDNESNLHQ 827 (943)
Q Consensus 759 l~DFGla~~~~~~~~~---~~~~~~gt~~y~aPE~~~~-------~~~~~~~DvwSlGvil~ellt-G~~p~~~~~~~~~ 827 (943)
|+|||+++........ ......||+.|+|||++.+ ..++.++|||||||++|||+| |+.||.+......
T Consensus 169 L~DFG~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~~~ 248 (434)
T 2rio_A 169 ISDFGLCKKLDSGQSSFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYSRES 248 (434)
T ss_dssp ECCCTTCEECCC--------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTCSTTTHHH
T ss_pred EcccccceecCCCCccceeeecCCCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCCCCCCchhhHH
Confidence 9999999987543221 1224569999999999876 568999999999999999999 9999976544332
Q ss_pred HHHHhccccccccccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 002278 828 LIMSKADDNTVMEAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLV 885 (943)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~ 885 (943)
.+.. ....... . ...........+.+++..||+.||++|||+.++++|-+
T Consensus 249 ~i~~--~~~~~~~-----~-~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~hp~ 298 (434)
T 2rio_A 249 NIIR--GIFSLDE-----M-KCLHDRSLIAEATDLISQMIDHDPLKRPTAMKVLRHPL 298 (434)
T ss_dssp HHHH--TCCCCCC-----C-TTCCCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHTSGG
T ss_pred HHhc--CCCCccc-----c-cccccccchHHHHHHHHHHhhCChhhCCCHHHHHhCCc
Confidence 1111 1111100 0 01112344567889999999999999999999998754
No 276
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}
Probab=100.00 E-value=3.2e-36 Score=330.69 Aligned_cols=254 Identities=22% Similarity=0.267 Sum_probs=183.0
Q ss_pred hhccccceEEeeeceEEEEEEEec-CCceEEEEEecccCcc-cH-HHHHHHHHHHhcCCCCCcceeeeEEecCCcceEEE
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYPH-NL-REFETELETIGSIRHRNIVSLHGYALSPYGNLLFY 691 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~-~~-~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 691 (943)
.++|+..+.||+|+||.||+|.++ +++.||||++...... .. +.+..+..+++.++||||+++++++.+++..++||
T Consensus 24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lv~ 103 (318)
T 2dyl_A 24 INDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIAM 103 (318)
T ss_dssp GGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred hccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcEEEEE
Confidence 468899999999999999999986 6889999998654322 22 23444555688889999999999999999999999
Q ss_pred EEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhh-CCCCCeEecCCCCccEEECCCCceeecccccccccCC
Q 002278 692 DYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHH-DCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIPT 770 (943)
Q Consensus 692 e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~-~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~~ 770 (943)
||+ ++.+..+... ....+++..+..++.|++.||+|||+ . +|+||||||+||+++.++.+||+|||+++....
T Consensus 104 e~~-~~~~~~l~~~--~~~~~~~~~~~~~~~~i~~~l~~lH~~~---~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~ 177 (318)
T 2dyl_A 104 ELM-GTCAEKLKKR--MQGPIPERILGKMTVAIVKALYYLKEKH---GVIHRDVKPSNILLDERGQIKLCDFGISGRLVD 177 (318)
T ss_dssp CCC-SEEHHHHHHH--HTSCCCHHHHHHHHHHHHHHHHHHHHHH---CCCCCCCCGGGEEECTTSCEEECCCTTC-----
T ss_pred ecc-CCcHHHHHHH--hccCCCHHHHHHHHHHHHHHHHHHHhhC---CEEeCCCCHHHEEECCCCCEEEEECCCchhccC
Confidence 999 5556555431 23568999999999999999999998 6 899999999999999999999999999976644
Q ss_pred CCCceeeeEecccceeCccccc-----cCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCcc
Q 002278 771 AMPHASTFVLGTIGYIDPEYAH-----TSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPE 845 (943)
Q Consensus 771 ~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 845 (943)
... .....||+.|+|||++. +..++.++|||||||++|||++|+.||..........................
T Consensus 178 ~~~--~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (318)
T 2dyl_A 178 DKA--KDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCKTDFEVLTKVLQEEPPLLPGHMG 255 (318)
T ss_dssp -----------CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTTCCSHHHHHHHHHHSCCCCCCSSSC
T ss_pred Ccc--ccccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCCCCccHHHHHHHhccCCCCCCccCC
Confidence 322 23346899999999984 45688999999999999999999999986443333222222111110000011
Q ss_pred cccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 002278 846 VSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLV 885 (943)
Q Consensus 846 ~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~ 885 (943)
+ ...+.+++..||+.||++||++.+++++-+
T Consensus 256 ~---------~~~l~~li~~~l~~dp~~Rps~~~ll~h~~ 286 (318)
T 2dyl_A 256 F---------SGDFQSFVKDCLTKDHRKRPKYNKLLEHSF 286 (318)
T ss_dssp C---------CHHHHHHHHHHTCSCTTTSCCHHHHTTSHH
T ss_pred C---------CHHHHHHHHHHccCChhHCcCHHHHhhCHH
Confidence 1 246778999999999999999999988654
No 277
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=7.1e-36 Score=356.43 Aligned_cols=335 Identities=19% Similarity=0.179 Sum_probs=221.9
Q ss_pred CCCCcEEEEeccccccccchhccccccceeccccCCccCCCCCcccccccccceeeccceecccccCCCCcCCCcccEEE
Q 002278 133 IPNLKTLDLARNQLTGEIPRLIYWNEVLQYLGLRGNALTGMLSPDMCQLTGLWYFDVRGNNLTGTIPDSIGNCTSFEILD 212 (943)
Q Consensus 133 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~ 212 (943)
+++++.|++++|.++..++..|..+++|++|+|++|.|+++++..|+.+++|++|+|++|.+++..|..|+++++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 45667777777776655455555555555555555555555444444444444444444444444444444444444444
Q ss_pred eecccccCcCCCCCCcceEeEEEecCccccccCCccccccCCCcEEecCCCCCCCCCCcccCCCCCcceEEecCCCCCCC
Q 002278 213 ISYNQITGEIPYNIGFLQVATLSLQGNKLTGKIPEVIGLMQALAVLDLSENELVGPIPPILGNLSYTGKLYLHGNKLTGP 292 (943)
Q Consensus 213 Ls~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 292 (943)
| ++|.+.+..+..|.++++|+.|+|++|.+++.
T Consensus 130 L-----------------------------------------------~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~ 162 (597)
T 3oja_B 130 L-----------------------------------------------ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERI 162 (597)
T ss_dssp C-----------------------------------------------CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBC
T ss_pred e-----------------------------------------------eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCC
Confidence 4 44444433333344445555555555555544
Q ss_pred CCCCcCCCCcCcEEEcccCccccccccccCCcccceEEEccccccCCcCcccccCCCcCcEEEeeCCcccCccccccccc
Q 002278 293 IPPELGNMSKLSYLQLQNNQLVGTIPAELGKLEQLFELNLADNNLEGPIPHNISSCTALNQFNVHGNRLSGAIPSSFRNL 372 (943)
Q Consensus 293 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 372 (943)
.|..|..+++|++|++++|.+++.. +..+++|+.|++++|.+.+ +...++|+.|++++|.+....+.. .
T Consensus 163 ~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~---~ 231 (597)
T 3oja_B 163 EDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRGPV---N 231 (597)
T ss_dssp CTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEECSC---C
T ss_pred ChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccccccccc---C
Confidence 4445555555555555555555331 3344555556666665543 223345667777777766433222 2
Q ss_pred CccceeeccCCcCCCCCCCCCCCCCCccEEecCCCcCCCccCCCcccccccceeecccccccccCCccccCCCccceecc
Q 002278 373 GSLTYLNLSRNNFKGKVPTELGRIINLDTLDLSVNNFSGSVPASIGDLEHLLTLNLSRNHLNGLLPAEFGNLRSIQTIDM 452 (943)
Q Consensus 373 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 452 (943)
++|+.|+|++|.+++ +..+..+++|+.|+|++|.+.+..|..|+.+++|+.|+|++|++++ +|..+..+++|+.|+|
T Consensus 232 ~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L 308 (597)
T 3oja_B 232 VELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDL 308 (597)
T ss_dssp SCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEEC
T ss_pred CCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEEC
Confidence 578888888888875 3667888889999999999988888889999999999999999986 5777788999999999
Q ss_pred cCccccccCChhhhcccccceecccCcccCCCCCCcCccccCCcccccCCccccccCCCCcccCcCCCCccccCCCCCCC
Q 002278 453 SFNQLSGSIPAELGQLQNIISLILNNNNLQGGIPDQLSNCFSLSNLNVSYNNLSGIIPPIRNFSRFSSNSFIGNPLLCGN 532 (943)
Q Consensus 453 s~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~~~~~~~~Np~~c~~ 532 (943)
++|+++ .+|..+..+++|+.|+|++|+|++. | +..+++|+.|++++|++++.... ..+..+....+.+++..|+.
T Consensus 309 s~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~ 383 (597)
T 3oja_B 309 SHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKI 383 (597)
T ss_dssp CSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCT
T ss_pred CCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCChhHH-HHHHHHhhhccccccccCCc
Confidence 999998 7888899999999999999999855 3 67788999999999999875321 33455666678899999986
Q ss_pred C
Q 002278 533 W 533 (943)
Q Consensus 533 ~ 533 (943)
+
T Consensus 384 ~ 384 (597)
T 3oja_B 384 D 384 (597)
T ss_dssp T
T ss_pred c
Confidence 4
No 278
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*
Probab=100.00 E-value=6.1e-36 Score=333.95 Aligned_cols=261 Identities=20% Similarity=0.232 Sum_probs=204.3
Q ss_pred hhccccceEEeeeceEEEEEEEecC-C-ceEEEEEecccCcccHHHHHHHHHHHhcCCCCC------cceeeeEEecCCc
Q 002278 615 TENLSEKYIVGYGASSTVYKCALKN-S-RPIAVKKLYNQYPHNLREFETELETIGSIRHRN------IVSLHGYALSPYG 686 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~~-~-~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n------iv~l~~~~~~~~~ 686 (943)
.++|+..+.||+|+||+||+|.+.. + +.||+|++... ....+.+.+|+++++.++|++ ++.+++++...+.
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 96 (355)
T 2eu9_A 18 QERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNV-GKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHGH 96 (355)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEETTE
T ss_pred cccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEccc-ccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeCCe
Confidence 4689999999999999999999753 4 68999998643 344567888999999887655 8999999999999
Q ss_pred ceEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEE---------------
Q 002278 687 NLLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILI--------------- 751 (943)
Q Consensus 687 ~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill--------------- 751 (943)
.++||||+ ++++.+++... ....+++.++..++.|++.||+|||++ +|+||||||+||++
T Consensus 97 ~~lv~e~~-~~~l~~~l~~~-~~~~~~~~~~~~i~~qi~~~L~~lH~~---~ivH~Dlkp~NIll~~~~~~~~~~~~~~~ 171 (355)
T 2eu9_A 97 MCIAFELL-GKNTFEFLKEN-NFQPYPLPHVRHMAYQLCHALRFLHEN---QLTHTDLKPENILFVNSEFETLYNEHKSC 171 (355)
T ss_dssp EEEEEECC-CCBHHHHHHHT-TTCCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEESCCCEEEEECCC-CC
T ss_pred EEEEEecc-CCChHHHHHhc-cCCCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEecccccccccccccc
Confidence 99999999 66777766532 224689999999999999999999999 99999999999999
Q ss_pred ----CCCCceeecccccccccCCCCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHH
Q 002278 752 ----DENFDAHLSDFGIARCIPTAMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQ 827 (943)
Q Consensus 752 ----~~~~~~kl~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~ 827 (943)
+.++.+||+|||+++...... ....||+.|+|||++.+..++.++|||||||++|||++|+.||........
T Consensus 172 ~~~~~~~~~~kl~Dfg~~~~~~~~~----~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~ 247 (355)
T 2eu9_A 172 EEKSVKNTSIRVADFGSATFDHEHH----TTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQTHENREH 247 (355)
T ss_dssp CEEEESCCCEEECCCTTCEETTSCC----CSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHHH
T ss_pred cccccCCCcEEEeecCccccccccc----cCCcCCCcccCCeeeecCCCCCccchHHHHHHHHHHHhCCCCCCCCCHHHH
Confidence 567899999999998654332 234589999999999999999999999999999999999999987665544
Q ss_pred HHHHhcccccccccc-------------------------------CcccccCccCHHHHHHHHHHHHHccCCCCCCCCC
Q 002278 828 LIMSKADDNTVMEAV-------------------------------DPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPT 876 (943)
Q Consensus 828 ~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt 876 (943)
........+..+... .+..............+.+++.+||+.||++|||
T Consensus 248 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt 327 (355)
T 2eu9_A 248 LVMMEKILGPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKENCKPLKSYMLQDSLEHVQLFDLMRRMLEFDPAQRIT 327 (355)
T ss_dssp HHHHHHHHCCCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCC
T ss_pred HHHHHHHcCCCcHHHhhhccchhhhcccccccccccchhccccccCCcccccccccchhHHHHHHHHHHHhcCChhhCcC
Confidence 333222211111100 0000001112233457889999999999999999
Q ss_pred HHHHHHHHh
Q 002278 877 MQEVARVLV 885 (943)
Q Consensus 877 ~~el~~~L~ 885 (943)
+.|+++|-+
T Consensus 328 ~~e~l~hp~ 336 (355)
T 2eu9_A 328 LAEALLHPF 336 (355)
T ss_dssp HHHHTTSGG
T ss_pred HHHHhcChh
Confidence 999988754
No 279
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Probab=100.00 E-value=1e-36 Score=333.68 Aligned_cols=247 Identities=20% Similarity=0.268 Sum_probs=193.2
Q ss_pred HHHhhccccceEEeeeceEEEEEEEec-CCceEEEEEecccCcc------cHHHHHHHHHHHhcC----CCCCcceeeeE
Q 002278 612 MRSTENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYPH------NLREFETELETIGSI----RHRNIVSLHGY 680 (943)
Q Consensus 612 ~~~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~------~~~~~~~E~~~l~~l----~h~niv~l~~~ 680 (943)
....++|+..+.||+|+||.||+|.+. +++.||+|++...... ....+.+|+++++++ +||||++++++
T Consensus 27 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~~ 106 (312)
T 2iwi_A 27 EAFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDW 106 (312)
T ss_dssp ------CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEEE
T ss_pred hhhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEEE
Confidence 345678999999999999999999875 5789999998654321 223455788888888 89999999999
Q ss_pred EecCCcceEEEEE-ccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEEC-CCCcee
Q 002278 681 ALSPYGNLLFYDY-MVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILID-ENFDAH 758 (943)
Q Consensus 681 ~~~~~~~~lv~e~-~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~-~~~~~k 758 (943)
+...+..++|||| +.+++|.+++. ....+++..++.++.|++.||+|||+. +|+||||||+||+++ .++.+|
T Consensus 107 ~~~~~~~~~v~e~~~~~~~L~~~l~---~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~k 180 (312)
T 2iwi_A 107 FETQEGFMLVLERPLPAQDLFDYIT---EKGPLGEGPSRCFFGQVVAAIQHCHSR---GVVHRDIKDENILIDLRRGCAK 180 (312)
T ss_dssp C-----CEEEEECCSSEEEHHHHHH---HHCSCCHHHHHHHHHHHHHHHHHHHHH---TEECCCCSGGGEEEETTTTEEE
T ss_pred EecCCeEEEEEEecCCCCCHHHHHH---hcCCCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCChhhEEEeCCCCeEE
Confidence 9999999999999 78999999996 345689999999999999999999999 999999999999999 889999
Q ss_pred ecccccccccCCCCCceeeeEecccceeCccccccCCCC-CcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccc
Q 002278 759 LSDFGIARCIPTAMPHASTFVLGTIGYIDPEYAHTSRLN-EKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNT 837 (943)
Q Consensus 759 l~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~-~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~ 837 (943)
|+|||+++...... .....|++.|+|||++.+..+. .++|||||||++|||++|+.||...... . .....
T Consensus 181 l~dfg~~~~~~~~~---~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~---~---~~~~~ 251 (312)
T 2iwi_A 181 LIDFGSGALLHDEP---YTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFERDQEI---L---EAELH 251 (312)
T ss_dssp ECCCSSCEECCSSC---BCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHHHH---H---HTCCC
T ss_pred EEEcchhhhcccCc---ccccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCCChHHH---h---hhccC
Confidence 99999998765432 2234589999999998876654 5899999999999999999999754221 1 11111
Q ss_pred cccccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhh
Q 002278 838 VMEAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVS 886 (943)
Q Consensus 838 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~ 886 (943)
..+.+ ...+.+++.+||+.||++|||+.|++++-+-
T Consensus 252 ----~~~~~---------~~~~~~li~~~l~~~p~~Rps~~e~l~~~~~ 287 (312)
T 2iwi_A 252 ----FPAHV---------SPDCCALIRRCLAPKPSSRPSLEEILLDPWM 287 (312)
T ss_dssp ----CCTTS---------CHHHHHHHHHHTCSSTTTSCCHHHHHHSTTT
T ss_pred ----CcccC---------CHHHHHHHHHHccCChhhCcCHHHHhcChhh
Confidence 11111 2457789999999999999999999998653
No 280
>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*
Probab=100.00 E-value=3.5e-36 Score=331.72 Aligned_cols=259 Identities=24% Similarity=0.323 Sum_probs=179.8
Q ss_pred hhccccceEEeeeceEEEEEEEec-CCceEEEEEecccCc-ccHHHHHHHHH-HHhcCCCCCcceeeeEEecCCcceEEE
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYP-HNLREFETELE-TIGSIRHRNIVSLHGYALSPYGNLLFY 691 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~-~~~~~~~~E~~-~l~~l~h~niv~l~~~~~~~~~~~lv~ 691 (943)
.++|+..+.||+|+||.||+|..+ +++.||||++..... ....++..|+. +++.++||||+++++++..++..++||
T Consensus 21 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~lv~ 100 (327)
T 3aln_A 21 AEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWICM 100 (327)
T ss_dssp SCSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEEEEE
T ss_pred HHHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceEEEE
Confidence 468889999999999999999986 688999999875432 23345556666 677889999999999999999999999
Q ss_pred EEccCCChhhhccCC--CCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccC
Q 002278 692 DYMVNGSLWDLLHGP--SKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIP 769 (943)
Q Consensus 692 e~~~~g~L~~~l~~~--~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~ 769 (943)
||+++ +|.+++... .....+++..+..++.|++.||+|||+.. +|+||||||+||+++.++.+||+|||+++...
T Consensus 101 e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~--~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~ 177 (327)
T 3aln_A 101 ELMST-SFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKENL--KIIHRDIKPSNILLDRSGNIKLCDFGISGQLV 177 (327)
T ss_dssp CCCSE-EHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHH--SCCCSCCCGGGEEEETTTEEEECCCSSSCC--
T ss_pred eecCC-ChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHhccC--CEeECCCCHHHEEEcCCCCEEEccCCCceecc
Confidence 99975 777776420 12456899999999999999999999842 89999999999999999999999999998764
Q ss_pred CCCCceeeeEecccceeCcccc----ccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCcc
Q 002278 770 TAMPHASTFVLGTIGYIDPEYA----HTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPE 845 (943)
Q Consensus 770 ~~~~~~~~~~~gt~~y~aPE~~----~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 845 (943)
.... .....||+.|+|||++ .+..++.++|||||||++|||++|+.||.............. ....+.
T Consensus 178 ~~~~--~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~------~~~~~~ 249 (327)
T 3aln_A 178 DSIA--KTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSVFDQLTQVV------KGDPPQ 249 (327)
T ss_dssp ------------------------------CCSHHHHHHHHHHHHHHHHSCCCSSCC-------CCCC------CSCCCC
T ss_pred cccc--cccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCcchHHHHHHHHh------cCCCCC
Confidence 4322 2233689999999998 456789999999999999999999999986543222111111 111111
Q ss_pred cccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 002278 846 VSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLV 885 (943)
Q Consensus 846 ~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~ 885 (943)
+.... .......+.+++..||+.||++|||+.+++++.+
T Consensus 250 ~~~~~-~~~~~~~l~~li~~~l~~dp~~Rps~~ell~hp~ 288 (327)
T 3aln_A 250 LSNSE-EREFSPSFINFVNLCLTKDESKRPKYKELLKHPF 288 (327)
T ss_dssp CCCCS-SCCCCHHHHHHHHHHTCSSGGGSCCHHHHTTSHH
T ss_pred CCCcc-cccCCHHHHHHHHHHhhCChhhCcCHHHHHhChH
Confidence 11100 0011246789999999999999999999988654
No 281
>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}
Probab=100.00 E-value=5.5e-36 Score=341.26 Aligned_cols=252 Identities=20% Similarity=0.288 Sum_probs=189.8
Q ss_pred hhccccceEEeeeceEEEEEEEecCCceEEEEEecccCcccHHHHHHHHHHHhcC-CCCCcceeeeEEecCCcceEEEEE
Q 002278 615 TENLSEKYIVGYGASSTVYKCALKNSRPIAVKKLYNQYPHNLREFETELETIGSI-RHRNIVSLHGYALSPYGNLLFYDY 693 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~e~ 693 (943)
..+|...++||+|+||+||.....+++.||||++..... ..+.+|+++++.+ +|||||++++++.+....++||||
T Consensus 23 ~~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~~---~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~E~ 99 (432)
T 3p23_A 23 KISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECF---SFADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAIEL 99 (432)
T ss_dssp TEEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTTTE---EECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred cEEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHHHH---HHHHHHHHHHHhccCCCCcCeEEEEEecCCEEEEEEEC
Confidence 457888999999999997765566789999999865432 2356799999999 799999999999999999999999
Q ss_pred ccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECC-----CCceeeccccccccc
Q 002278 694 MVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDE-----NFDAHLSDFGIARCI 768 (943)
Q Consensus 694 ~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~-----~~~~kl~DFGla~~~ 768 (943)
+. |+|.+++... .....+..+..++.||+.||+|||+. +|+||||||+||+++. ...+||+|||+|+..
T Consensus 100 ~~-g~L~~~l~~~--~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~~ 173 (432)
T 3p23_A 100 CA-ATLQEYVEQK--DFAHLGLEPITLLQQTTSGLAHLHSL---NIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKL 173 (432)
T ss_dssp CS-EEHHHHHHSS--SCCCCSSCHHHHHHHHHHHHHHHHHT---TCCCCCCSTTSEEECCCBTTTBCCEEECCTTEEECC
T ss_pred CC-CCHHHHHHhc--CCCccchhHHHHHHHHHHHHHHHHHC---cCEeCCCCHHHEEEecCCCCCceeEEEecccceeec
Confidence 96 6999998743 22345556788999999999999999 9999999999999953 235889999999876
Q ss_pred CCCCC--ceeeeEecccceeCccccc---cCCCCCcchhhhHHHHHHHHHh-CCCCCCCCccHHHHHHHhcccccccccc
Q 002278 769 PTAMP--HASTFVLGTIGYIDPEYAH---TSRLNEKSDVYSFGIVLLEILT-GKKAVDNESNLHQLIMSKADDNTVMEAV 842 (943)
Q Consensus 769 ~~~~~--~~~~~~~gt~~y~aPE~~~---~~~~~~~~DvwSlGvil~ellt-G~~p~~~~~~~~~~~~~~~~~~~~~~~~ 842 (943)
..... .......||+.|+|||++. +..++.++||||+||++|||+| |+.||........... ..... ....
T Consensus 174 ~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~~~~~~~--~~~~~-~~~~ 250 (432)
T 3p23_A 174 AVGRHSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQRQANIL--LGACS-LDCL 250 (432)
T ss_dssp ------------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTTHHHHHH--TTCCC-CTTS
T ss_pred cCCCcceeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhhHHHHHHH--hccCC-cccc
Confidence 53321 1233456999999999998 4567889999999999999999 9999975543322211 11111 1111
Q ss_pred CcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 002278 843 DPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLV 885 (943)
Q Consensus 843 ~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~ 885 (943)
.+ .......+.+++..||+.||++|||+.++++|-+
T Consensus 251 ~~-------~~~~~~~~~~li~~~L~~dP~~Rps~~evl~hp~ 286 (432)
T 3p23_A 251 HP-------EKHEDVIARELIEKMIAMDPQKRPSAKHVLKHPF 286 (432)
T ss_dssp CT-------TCHHHHHHHHHHHHHSCSSGGGSCCHHHHHTSTT
T ss_pred Cc-------cccccHHHHHHHHHHHhCCHhhCCCHHHHHhCcc
Confidence 11 1123345678999999999999999999997643
No 282
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A
Probab=100.00 E-value=6e-36 Score=336.45 Aligned_cols=263 Identities=16% Similarity=0.191 Sum_probs=199.6
Q ss_pred hhccccceEEeeeceEEEEEEEec-CCceEEEEEecccCcccHHHHHHHHHHHhcCC-----------CCCcceeeeEEe
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYPHNLREFETELETIGSIR-----------HRNIVSLHGYAL 682 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-----------h~niv~l~~~~~ 682 (943)
.++|+..+.||+|+||+||+|.+. +++.||||++... ....+.+.+|++++++++ ||||+++++++.
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~ 96 (373)
T 1q8y_A 18 DARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGD-KVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFN 96 (373)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEE
T ss_pred CCeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCC-ccchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhh
Confidence 468999999999999999999975 6789999998643 334567888999988876 899999999997
Q ss_pred cCC----cceEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEEC------
Q 002278 683 SPY----GNLLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILID------ 752 (943)
Q Consensus 683 ~~~----~~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~------ 752 (943)
..+ ..++||||+ +++|.+++... ....+++..+..++.||+.||+|||+++ +|+||||||+||+++
T Consensus 97 ~~~~~~~~~~lv~e~~-~~~L~~~~~~~-~~~~~~~~~~~~i~~qi~~aL~~lH~~~--~ivH~Dikp~NIll~~~~~~~ 172 (373)
T 1q8y_A 97 HKGPNGVHVVMVFEVL-GENLLALIKKY-EHRGIPLIYVKQISKQLLLGLDYMHRRC--GIIHTDIKPENVLMEIVDSPE 172 (373)
T ss_dssp EEETTEEEEEEEECCC-CEEHHHHHHHT-TTSCCCHHHHHHHHHHHHHHHHHHHHTT--CEECSCCSGGGEEEEEEETTT
T ss_pred ccCCCCceEEEEEecC-CCCHHHHHHHh-hccCCcHHHHHHHHHHHHHHHHHHHhcC--CEEecCCChHHeEEeccCCCc
Confidence 654 678999999 89999998643 2345899999999999999999999843 899999999999994
Q ss_pred CCCceeecccccccccCCCCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCcc------HH
Q 002278 753 ENFDAHLSDFGIARCIPTAMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESN------LH 826 (943)
Q Consensus 753 ~~~~~kl~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~------~~ 826 (943)
..+.+||+|||+++...... ....||+.|+|||++.+..++.++|||||||++|||+||+.||..... ..
T Consensus 173 ~~~~~kl~Dfg~a~~~~~~~----~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~ 248 (373)
T 1q8y_A 173 NLIQIKIADLGNACWYDEHY----TNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDD 248 (373)
T ss_dssp TEEEEEECCCTTCEETTBCC----CSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHHH
T ss_pred CcceEEEcccccccccCCCC----CCCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCCCCCCCCcccccCChHH
Confidence 44579999999998765432 223589999999999999999999999999999999999999975431 11
Q ss_pred HHHHHhccccccccc--------------------cCc-cc--------ccCccCHHHHHHHHHHHHHccCCCCCCCCCH
Q 002278 827 QLIMSKADDNTVMEA--------------------VDP-EV--------SVTCVDLSAVRKTFQLALLCTKRYPSERPTM 877 (943)
Q Consensus 827 ~~~~~~~~~~~~~~~--------------------~~~-~~--------~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~ 877 (943)
.........+..+.. ... .. ............+.+++..||+.||++|||+
T Consensus 249 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~ 328 (373)
T 1q8y_A 249 HIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADA 328 (373)
T ss_dssp HHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCH
T ss_pred HHHHHHHhcCCCCHHHHhccchhhhhcCCcchhcccccccccchhhhhhhcccCCcchHHHHHHHHHHHhccCccccCCH
Confidence 111111111111000 000 00 0001123456778899999999999999999
Q ss_pred HHHHHHHhh
Q 002278 878 QEVARVLVS 886 (943)
Q Consensus 878 ~el~~~L~~ 886 (943)
.|+++|-+-
T Consensus 329 ~ell~hp~f 337 (373)
T 1q8y_A 329 GGLVNHPWL 337 (373)
T ss_dssp HHHHTCGGG
T ss_pred HHHhhChhh
Confidence 999998653
No 283
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...
Probab=100.00 E-value=9.4e-37 Score=334.93 Aligned_cols=244 Identities=22% Similarity=0.326 Sum_probs=200.5
Q ss_pred HhhccccceEEeeeceEEEEEEEec-CCceEEEEEecccCcc------cHHHHHHHHHHHhcCC--CCCcceeeeEEecC
Q 002278 614 STENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYPH------NLREFETELETIGSIR--HRNIVSLHGYALSP 684 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~------~~~~~~~E~~~l~~l~--h~niv~l~~~~~~~ 684 (943)
..++|+..+.||+|+||.||+|.+. +++.||||++...... ..+.+.+|+.+++.++ ||||+++++++..+
T Consensus 41 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~~~ 120 (320)
T 3a99_A 41 LESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERP 120 (320)
T ss_dssp CTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECS
T ss_pred ccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEecC
Confidence 4678999999999999999999965 5788999998654321 2245678999999986 59999999999999
Q ss_pred CcceEEEEEccC-CChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEEC-CCCceeeccc
Q 002278 685 YGNLLFYDYMVN-GSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILID-ENFDAHLSDF 762 (943)
Q Consensus 685 ~~~~lv~e~~~~-g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~-~~~~~kl~DF 762 (943)
+..++|||++.+ ++|.+++. ....+++..+..++.|++.||+|||+. +|+||||||+||+++ +++.+||+||
T Consensus 121 ~~~~lv~e~~~~~~~L~~~l~---~~~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~~kL~Df 194 (320)
T 3a99_A 121 DSFVLILERPEPVQDLFDFIT---ERGALQEELARSFFWQVLEAVRHCHNC---GVLHRDIKDENILIDLNRGELKLIDF 194 (320)
T ss_dssp SEEEEEEECCSSEEEHHHHHH---HHCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTTEEEECCC
T ss_pred CcEEEEEEcCCCCccHHHHHh---ccCCCCHHHHHHHHHHHHHHHHHHHHC---CcEeCCCCHHHEEEeCCCCCEEEeeC
Confidence 999999999976 89999986 345689999999999999999999999 999999999999999 7899999999
Q ss_pred ccccccCCCCCceeeeEecccceeCccccccCCC-CCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccc
Q 002278 763 GIARCIPTAMPHASTFVLGTIGYIDPEYAHTSRL-NEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEA 841 (943)
Q Consensus 763 Gla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~ 841 (943)
|+++...... .....||+.|+|||++.+..+ +.++|||||||++|||++|+.||...... . .....
T Consensus 195 g~~~~~~~~~---~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~---~---~~~~~---- 261 (320)
T 3a99_A 195 GSGALLKDTV---YTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHDEEI---I---RGQVF---- 261 (320)
T ss_dssp TTCEECCSSC---BCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSHHHH---H---HCCCC----
T ss_pred cccccccccc---ccCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCCChhhh---h---ccccc----
Confidence 9998765432 223458999999999887665 68899999999999999999999754221 1 11111
Q ss_pred cCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHh
Q 002278 842 VDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLV 885 (943)
Q Consensus 842 ~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~ 885 (943)
..+.+ ...+.+++.+||+.||++|||+.+++++-+
T Consensus 262 ~~~~~---------~~~~~~li~~~l~~dp~~Rps~~~ll~hp~ 296 (320)
T 3a99_A 262 FRQRV---------SSECQHLIRWCLALRPSDRPTFEEIQNHPW 296 (320)
T ss_dssp CSSCC---------CHHHHHHHHHHTCSSGGGSCCHHHHHTSGG
T ss_pred ccccC---------CHHHHHHHHHHccCChhhCcCHHHHhcCHh
Confidence 11111 146778999999999999999999998754
No 284
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=3.3e-36 Score=328.91 Aligned_cols=258 Identities=33% Similarity=0.558 Sum_probs=188.9
Q ss_pred CcceEEecCCCCCC--CCCCCcCCCCcCcEEEccc-CccccccccccCCcccceEEEccccccCCcCcccccCCCcCcEE
Q 002278 278 YTGKLYLHGNKLTG--PIPPELGNMSKLSYLQLQN-NQLVGTIPAELGKLEQLFELNLADNNLEGPIPHNISSCTALNQF 354 (943)
Q Consensus 278 ~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 354 (943)
+++.|+|++|.+++ .+|..|.++++|++|++++ |.+.+.+|..|..+++|++|+|++|++++.+|..|..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 34455555555554 4555555566666666663 55655566666666666666666666665666666666666666
Q ss_pred EeeCCcccCcccccccccCccceeeccCCcCCCCCCCCCCCCC-CccEEecCCCcCCCccCCCcccccccceeecccccc
Q 002278 355 NVHGNRLSGAIPSSFRNLGSLTYLNLSRNNFKGKVPTELGRII-NLDTLDLSVNNFSGSVPASIGDLEHLLTLNLSRNHL 433 (943)
Q Consensus 355 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 433 (943)
++++|.+++.+|..|..+++|++|+|++|++++.+|..+..+. +|+.|++++|++++.+|..+..++ |+.|+|++|++
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l 209 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence 6666666666666666677777777777777666676677666 777777777777777777777776 88888888888
Q ss_pred cccCCccccCCCccceecccCccccccCChhhhcccccceecccCcccCCCCCCcCccccCCcccccCCccccccCCCCc
Q 002278 434 NGLLPAEFGNLRSIQTIDMSFNQLSGSIPAELGQLQNIISLILNNNNLQGGIPDQLSNCFSLSNLNVSYNNLSGIIPPIR 513 (943)
Q Consensus 434 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~ 513 (943)
++.+|..|..+++|+.|+|++|++++.+|. +..+++|++|+|++|++++.+|..+..+++|+.|+|++|+|+|.+|...
T Consensus 210 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~ 288 (313)
T 1ogq_A 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG 288 (313)
T ss_dssp EECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCST
T ss_pred cCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCc
Confidence 877888888888888888888888865554 7778888888888888888888888888888888888888888888877
Q ss_pred ccCcCCCCccccCCCCCCCCCCCcc
Q 002278 514 NFSRFSSNSFIGNPLLCGNWIGSIC 538 (943)
Q Consensus 514 ~~~~~~~~~~~~Np~~c~~~~~~~c 538 (943)
.+.++..+.+.+||++||.|+. .|
T Consensus 289 ~l~~L~~l~l~~N~~lc~~p~~-~C 312 (313)
T 1ogq_A 289 NLQRFDVSAYANNKCLCGSPLP-AC 312 (313)
T ss_dssp TGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred cccccChHHhcCCCCccCCCCC-CC
Confidence 7888888889999999998875 46
No 285
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=100.00 E-value=6.8e-37 Score=358.38 Aligned_cols=261 Identities=21% Similarity=0.253 Sum_probs=199.2
Q ss_pred hhccccceEEeeeceEEEEEEEec-CCceEEEEEecccC-cccHHHHHHHHHHHhcCCCCCcceeeeEEec------CCc
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQY-PHNLREFETELETIGSIRHRNIVSLHGYALS------PYG 686 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~------~~~ 686 (943)
.++|+..+.||+|+||+||+|.+. +++.||||++.... ....+.+.+|++++++++||||+++++++.. .+.
T Consensus 13 ~grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~~ 92 (676)
T 3qa8_A 13 CGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDL 92 (676)
T ss_dssp ----CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTSS
T ss_pred CCCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCCe
Confidence 468999999999999999999975 58899999986542 3445678999999999999999999998765 667
Q ss_pred ceEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCc---eeecccc
Q 002278 687 NLLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFD---AHLSDFG 763 (943)
Q Consensus 687 ~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~---~kl~DFG 763 (943)
.++||||+++|+|.+++........+++..++.++.|++.||+|||+. +|+||||||+||+++.++. +||+|||
T Consensus 93 ~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLHs~---gIVHrDLKP~NILl~~~g~~~~vKL~DFG 169 (676)
T 3qa8_A 93 PLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHEN---RIIHRDLKPENIVLQPGPQRLIHKIIDLG 169 (676)
T ss_dssp CCCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHHHT---TBCCCCCCSTTEEEECCSSSCEEEECSCC
T ss_pred EEEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCCHHHeEeecCCCceeEEEcccc
Confidence 799999999999999998654445689999999999999999999999 9999999999999997665 9999999
Q ss_pred cccccCCCCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccc----cc
Q 002278 764 IARCIPTAMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNT----VM 839 (943)
Q Consensus 764 la~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~----~~ 839 (943)
+++....... .....||+.|+|||++.+..++.++||||+||++|||++|+.||........+......... ..
T Consensus 170 ~a~~~~~~~~--~~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~~~~~~~~~~~i~~~~~~~~~~~ 247 (676)
T 3qa8_A 170 YAKELDQGEL--CTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPNWQPVQWHGKVREKSNEHIVVY 247 (676)
T ss_dssp CCCBTTSCCC--CCCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCCSSCHHHHSSTTCC------CCSC
T ss_pred cccccccccc--cccccCCcccCChHHhccCCCCchhHHHHHHHHHHHHHHCCCCCCcccchhhhhhhhhcccchhhhhh
Confidence 9987754432 23346999999999999999999999999999999999999999765443332211111000 00
Q ss_pred ccc------Cccccc-CccCHHHHHHHHHHHHHccCCCCCCCCCHHHH
Q 002278 840 EAV------DPEVSV-TCVDLSAVRKTFQLALLCTKRYPSERPTMQEV 880 (943)
Q Consensus 840 ~~~------~~~~~~-~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el 880 (943)
+.. ....+. ..........+.+++..|+..||++|||+.++
T Consensus 248 ~~l~g~~~~~~~lp~p~~l~~~ls~~L~dLI~~mL~~DP~kRPTa~el 295 (676)
T 3qa8_A 248 DDLTGAVKFSSVLPTPNHLSGILAGKLERWLQCMLMWHQRQRGTDPQN 295 (676)
T ss_dssp CCCSSSCCCCSSSCCSCCCCGGGHHHHHHHHHHHSCSSCC---CCTTC
T ss_pred hhhccccccccccCCchhhchhhhHHHHHHHHHHccCCHhhCcCHHHH
Confidence 000 000000 00112245678899999999999999999774
No 286
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.9e-34 Score=320.75 Aligned_cols=241 Identities=25% Similarity=0.407 Sum_probs=155.5
Q ss_pred ccccCCCcEEecCCCCCCCCCCcccCCCCCcceEEecCCCCCCCCCCCcCCCCcCcEEEcccCccccccccccCCcccce
Q 002278 249 IGLMQALAVLDLSENELVGPIPPILGNLSYTGKLYLHGNKLTGPIPPELGNMSKLSYLQLQNNQLVGTIPAELGKLEQLF 328 (943)
Q Consensus 249 l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 328 (943)
+..+++|++|++++|.+.+..+ +..+++|+.|++++|.....+ ..+..+++|++|++++|.+.+..+ +..+++|+
T Consensus 106 ~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~ 180 (347)
T 4fmz_A 106 LQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLY 180 (347)
T ss_dssp GTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCS
T ss_pred HcCCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCC
Confidence 3444455555555555443222 445555555555555333222 235556666666666666653332 55666666
Q ss_pred EEEccccccCCcCcccccCCCcCcEEEeeCCcccCcccccccccCccceeeccCCcCCCCCCCCCCCCCCccEEecCCCc
Q 002278 329 ELNLADNNLEGPIPHNISSCTALNQFNVHGNRLSGAIPSSFRNLGSLTYLNLSRNNFKGKVPTELGRIINLDTLDLSVNN 408 (943)
Q Consensus 329 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 408 (943)
+|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|++++..+ +..+++|+.|++++|.
T Consensus 181 ~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~ 254 (347)
T 4fmz_A 181 SLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQ 254 (347)
T ss_dssp EEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCc
Confidence 66666666654333 5666666777777776664433 6667777777777777764333 6677777777777777
Q ss_pred CCCccCCCcccccccceeecccccccccCCccccCCCccceecccCccccccCChhhhcccccceecccCcccCCCCCCc
Q 002278 409 FSGSVPASIGDLEHLLTLNLSRNHLNGLLPAEFGNLRSIQTIDMSFNQLSGSIPAELGQLQNIISLILNNNNLQGGIPDQ 488 (943)
Q Consensus 409 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 488 (943)
+++. ..+..+++|+.|++++|++++. ..+..+++|+.|++++|++++..|..|+.+++|+.|+|++|++++..|
T Consensus 255 l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-- 328 (347)
T 4fmz_A 255 ISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-- 328 (347)
T ss_dssp CCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--
T ss_pred cCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--
Confidence 7743 3577777888888888888754 457778888888888888887777788888888888888888886666
Q ss_pred CccccCCcccccCCcccc
Q 002278 489 LSNCFSLSNLNVSYNNLS 506 (943)
Q Consensus 489 ~~~l~~L~~L~ls~N~l~ 506 (943)
+..+++|+.|++++|+|+
T Consensus 329 ~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 329 LASLSKMDSADFANQVIK 346 (347)
T ss_dssp GGGCTTCSEESSSCC---
T ss_pred hhhhhccceeehhhhccc
Confidence 777888888888888875
No 287
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.8e-34 Score=320.96 Aligned_cols=152 Identities=24% Similarity=0.372 Sum_probs=87.6
Q ss_pred cCCcccceEEEccccccCCcCcccccCCCcCcEEEeeCCcccCcccccccccCccceeeccCCcCCCCCCCCCCCCCCcc
Q 002278 321 LGKLEQLFELNLADNNLEGPIPHNISSCTALNQFNVHGNRLSGAIPSSFRNLGSLTYLNLSRNNFKGKVPTELGRIINLD 400 (943)
Q Consensus 321 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 400 (943)
+..+++|+.|++++|.+.+..+ +..+++|++|++++|++++..+ +..+++|+.|++++|.+++. ..+..+++|+
T Consensus 195 ~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~ 268 (347)
T 4fmz_A 195 LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLK 268 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCC
T ss_pred ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcC
Confidence 3344444444444444443222 4444444444555544443322 45555555555555555532 3455566666
Q ss_pred EEecCCCcCCCccCCCcccccccceeecccccccccCCccccCCCccceecccCccccccCChhhhcccccceecccCcc
Q 002278 401 TLDLSVNNFSGSVPASIGDLEHLLTLNLSRNHLNGLLPAEFGNLRSIQTIDMSFNQLSGSIPAELGQLQNIISLILNNNN 480 (943)
Q Consensus 401 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 480 (943)
.|++++|.+++. ..+..+++|+.|++++|++++..|..|..+++|++|++++|++++..| +..+++|+.|++++|+
T Consensus 269 ~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 269 MLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQV 344 (347)
T ss_dssp EEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC-
T ss_pred EEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhc
Confidence 666666666643 246667777777777777776667777777777777777777775444 6777777777777777
Q ss_pred cC
Q 002278 481 LQ 482 (943)
Q Consensus 481 l~ 482 (943)
|+
T Consensus 345 i~ 346 (347)
T 4fmz_A 345 IK 346 (347)
T ss_dssp --
T ss_pred cc
Confidence 65
No 288
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A
Probab=100.00 E-value=5.2e-35 Score=314.90 Aligned_cols=230 Identities=12% Similarity=0.077 Sum_probs=183.8
Q ss_pred hccccceEEeeeceEEEEEEEecC-CceEEEEEecccCcc---cHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEEE
Q 002278 616 ENLSEKYIVGYGASSTVYKCALKN-SRPIAVKKLYNQYPH---NLREFETELETIGSIRHRNIVSLHGYALSPYGNLLFY 691 (943)
Q Consensus 616 ~~~~~~~~lG~G~~g~Vy~~~~~~-~~~vavK~~~~~~~~---~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv~ 691 (943)
++|+..+.||+|+||.||+|.+.. ++.||+|++...... ..+.+.+|+++++.++||||+++++++.+.+..++||
T Consensus 31 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~lv~ 110 (286)
T 3uqc_A 31 GRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLVVA 110 (286)
T ss_dssp TTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred CcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEEEE
Confidence 679999999999999999999864 889999999765432 3467889999999999999999999999999999999
Q ss_pred EEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccCCC
Q 002278 692 DYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIPTA 771 (943)
Q Consensus 692 e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~~~ 771 (943)
||+++++|.+++.. + ....++.+++.|++.||+|||++ +|+||||||+||+++.++.+||+++|
T Consensus 111 e~~~g~~L~~~l~~----~-~~~~~~~~i~~ql~~aL~~lH~~---givH~Dikp~NIll~~~g~~kl~~~~-------- 174 (286)
T 3uqc_A 111 EWIRGGSLQEVADT----S-PSPVGAIRAMQSLAAAADAAHRA---GVALSIDHPSRVRVSIDGDVVLAYPA-------- 174 (286)
T ss_dssp ECCCEEEHHHHHTT----C-CCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEEETTSCEEECSCC--------
T ss_pred EecCCCCHHHHHhc----C-CChHHHHHHHHHHHHHHHHHHHC---CCccCCCCcccEEEcCCCCEEEEecc--------
Confidence 99999999999952 2 35567889999999999999999 99999999999999999999998554
Q ss_pred CCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHH---HHhccccccccccCccccc
Q 002278 772 MPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLI---MSKADDNTVMEAVDPEVSV 848 (943)
Q Consensus 772 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 848 (943)
|++ .++.++|||||||++|||+||+.||.+........ ..............+.+
T Consensus 175 -------------~~~-------~~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 232 (286)
T 3uqc_A 175 -------------TMP-------DANPQDDIRGIGASLYALLVNRWPLPEAGVRSGLAPAERDTAGQPIEPADIDRDI-- 232 (286)
T ss_dssp -------------CCT-------TCCHHHHHHHHHHHHHHHHHSEECSCCCSBCCCSEECCBCTTSCBCCHHHHCTTS--
T ss_pred -------------ccC-------CCCchhHHHHHHHHHHHHHHCCCCCCcCCcchhhHHHHHHhccCCCChhhcccCC--
Confidence 333 36889999999999999999999998654321100 00000000011111111
Q ss_pred CccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhhcCCCC
Q 002278 849 TCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVSLLPAP 891 (943)
Q Consensus 849 ~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~~~~~~ 891 (943)
...+.+++.+||+.||++| |+.|+++.|+......
T Consensus 233 -------~~~l~~li~~~l~~dP~~R-s~~el~~~L~~~~~~~ 267 (286)
T 3uqc_A 233 -------PFQISAVAARSVQGDGGIR-SASTLLNLMQQATAVA 267 (286)
T ss_dssp -------CHHHHHHHHHHHCTTSSCC-CHHHHHHHHHHHHC--
T ss_pred -------CHHHHHHHHHHcccCCccC-CHHHHHHHHHHHhccC
Confidence 2467899999999999999 9999999998876543
No 289
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*
Probab=100.00 E-value=3.4e-34 Score=311.46 Aligned_cols=235 Identities=19% Similarity=0.224 Sum_probs=180.1
Q ss_pred hhccccc-eEEeeeceEEEEEEEec-CCceEEEEEecccCcccHHHHHHHHHHH-hcCCCCCcceeeeEEec----CCcc
Q 002278 615 TENLSEK-YIVGYGASSTVYKCALK-NSRPIAVKKLYNQYPHNLREFETELETI-GSIRHRNIVSLHGYALS----PYGN 687 (943)
Q Consensus 615 ~~~~~~~-~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l-~~l~h~niv~l~~~~~~----~~~~ 687 (943)
.++|... +.||+|+||.||+|..+ +++.||+|++... ..+.+|++++ +..+||||+++++++.. ....
T Consensus 16 ~~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~-----~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~ 90 (299)
T 3m2w_A 16 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCL 90 (299)
T ss_dssp GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEE
T ss_pred ccchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEeccc-----HHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCceE
Confidence 3566666 78999999999999975 5789999998542 5677888887 66689999999999876 5678
Q ss_pred eEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECC---CCceeeccccc
Q 002278 688 LLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDE---NFDAHLSDFGI 764 (943)
Q Consensus 688 ~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~---~~~~kl~DFGl 764 (943)
++||||+++|+|.+++... ....+++..+..++.|++.||+|||+. +|+||||||+||+++. ++.+||+|||+
T Consensus 91 ~lv~e~~~~~~L~~~l~~~-~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~ 166 (299)
T 3m2w_A 91 LIVMECLDGGELFSRIQDR-GDQAFTEREASEIMKSIGEAIQYLHSI---NIAHRDVKPENLLYTSKRPNAILKLTDFGF 166 (299)
T ss_dssp EEEECCCCSCBHHHHHHHC-TTCCCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSTTCCEEECCCTT
T ss_pred EEEEeecCCCcHHHHHHhc-cCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEecCCCCCcEEEecccc
Confidence 9999999999999999742 234689999999999999999999999 9999999999999997 78899999999
Q ss_pred ccccCCCCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCc
Q 002278 765 ARCIPTAMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDP 844 (943)
Q Consensus 765 a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 844 (943)
++... +..++.++||||+||++|||+||+.||.+.......... .... .....
T Consensus 167 a~~~~-----------------------~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~---~~~~-~~~~~ 219 (299)
T 3m2w_A 167 AKETT-----------------------GEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGM---KTRI-RMGQY 219 (299)
T ss_dssp CEECT-----------------------TCGGGGHHHHHHHHHHHHHHHHSSCSCCC-------CCS---CCSS-CTTCC
T ss_pred ccccc-----------------------cccCCchhhHHHHHHHHHHHHHCCCCCCCCcchhhhHHH---HHHH-hhccc
Confidence 86432 234678999999999999999999999765432211000 0000 00000
Q ss_pred ccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHHHhh
Q 002278 845 EVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARVLVS 886 (943)
Q Consensus 845 ~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~L~~ 886 (943)
..+... .......+.+++..||+.||++|||+.|+++|.+-
T Consensus 220 ~~~~~~-~~~~~~~~~~li~~~l~~dP~~Rps~~e~l~hp~~ 260 (299)
T 3m2w_A 220 EFPNPE-WSEVSEEVKMLIRNLLKTEPTQRMTITEFMNHPWI 260 (299)
T ss_dssp SSCHHH-HTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTSHHH
T ss_pred cCCchh-cccCCHHHHHHHHHHcccChhhCCCHHHHhcChhh
Confidence 000000 00112567899999999999999999999998664
No 290
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1e-34 Score=351.28 Aligned_cols=238 Identities=20% Similarity=0.260 Sum_probs=192.0
Q ss_pred hhccccceEEeeeceEEEEEEEec--CCceEEEEEecccC-cccHHHHHHHHHHHhcCCCCCcceeeeEEecCCc-----
Q 002278 615 TENLSEKYIVGYGASSTVYKCALK--NSRPIAVKKLYNQY-PHNLREFETELETIGSIRHRNIVSLHGYALSPYG----- 686 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~--~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~----- 686 (943)
.++|++.+.||+|+||+||+|.+. +++.||||++.... ......+.+|+++++.++|||||++++++...+.
T Consensus 79 ~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~ 158 (681)
T 2pzi_A 79 AGQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPV 158 (681)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEE
T ss_pred CCceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCce
Confidence 368999999999999999999986 57899999886543 3345578899999999999999999999987665
Q ss_pred ceEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeeccccccc
Q 002278 687 NLLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIAR 766 (943)
Q Consensus 687 ~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~ 766 (943)
.++||||+++++|.+++.. .+++.+++.++.||+.||+|||++ +|+||||||+||+++.+ .+||+|||+++
T Consensus 159 ~~lv~E~~~g~~L~~~~~~-----~l~~~~~~~~~~qi~~aL~~lH~~---giiHrDlkp~NIll~~~-~~kl~DFG~a~ 229 (681)
T 2pzi_A 159 GYIVMEYVGGQSLKRSKGQ-----KLPVAEAIAYLLEILPALSYLHSI---GLVYNDLKPENIMLTEE-QLKLIDLGAVS 229 (681)
T ss_dssp EEEEEECCCCEECC----C-----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECSS-CEEECCCTTCE
T ss_pred eEEEEEeCCCCcHHHHHhC-----CCCHHHHHHHHHHHHHHHHHHHHC---CCeecccChHHeEEeCC-cEEEEecccch
Confidence 6999999999999987752 689999999999999999999999 99999999999999986 89999999998
Q ss_pred ccCCCCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCCCCccHHHHHHHhccccccccccCccc
Q 002278 767 CIPTAMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPEV 846 (943)
Q Consensus 767 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 846 (943)
..... ....||+.|+|||++.+.. +.++|||||||++|||++|.+||.+... .....
T Consensus 230 ~~~~~-----~~~~gt~~y~aPE~~~~~~-~~~sDi~slG~~l~~l~~g~~~~~~~~~---------------~~~~~-- 286 (681)
T 2pzi_A 230 RINSF-----GYLYGTPGFQAPEIVRTGP-TVATDIYTVGRTLAALTLDLPTRNGRYV---------------DGLPE-- 286 (681)
T ss_dssp ETTCC-----SCCCCCTTTSCTTHHHHCS-CHHHHHHHHHHHHHHHHSCCCEETTEEC---------------SSCCT--
T ss_pred hcccC-----CccCCCccccCHHHHcCCC-CCceehhhhHHHHHHHHhCCCCCccccc---------------ccccc--
Confidence 76543 2346999999999987654 8999999999999999999999874211 00000
Q ss_pred ccCccCHHHHHHHHHHHHHccCCCCCCCCC-HHHHHHHHhh
Q 002278 847 SVTCVDLSAVRKTFQLALLCTKRYPSERPT-MQEVARVLVS 886 (943)
Q Consensus 847 ~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt-~~el~~~L~~ 886 (943)
..........+.+++.+||+.||++||+ ++++...+..
T Consensus 287 --~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~ 325 (681)
T 2pzi_A 287 --DDPVLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQLTG 325 (681)
T ss_dssp --TCHHHHHCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHH
T ss_pred --cccccccCHHHHHHHhhhccCChhhCCCHHHHHHHHHHH
Confidence 0011122356788999999999999995 5555555543
No 291
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=1.1e-33 Score=312.32 Aligned_cols=288 Identities=22% Similarity=0.273 Sum_probs=181.6
Q ss_pred CCCEEEeeCCcccccCCCCccCCCCCcEEeccCCCcCCccchhccccccceEEEecCcccccCCCcccCCCCCCcEEEEe
Q 002278 63 NLQSIDFQGNKLTGQIPDEIGNCGSLVHIELSDNSLYGDIPFSISKLKQLEFLNLKNNQLTGPIPSTLTQIPNLKTLDLA 142 (943)
Q Consensus 63 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 142 (943)
+++.+++++|+++ .+|..+. ++|++|+|++|.+++..|..|+++++|++|+|++|++++..|..|.++++|++|+|+
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 4556666666665 4554442 456666666666664445556666666666666666665556666666666666666
Q ss_pred ccccccccchhccccccceeccccCCccCCCCCcccccccccceeeccceeccc--ccCCCCcCCCcccEEEeecccccC
Q 002278 143 RNQLTGEIPRLIYWNEVLQYLGLRGNALTGMLSPDMCQLTGLWYFDVRGNNLTG--TIPDSIGNCTSFEILDISYNQITG 220 (943)
Q Consensus 143 ~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~--~~~~~l~~l~~L~~L~Ls~N~l~~ 220 (943)
+|+++ .+|..+. ++|++|++++|+++++++..|..+++|++|++++|.++. ..+..+..+ +|++|++++|++++
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 66666 3333332 566666666666666666666667777777777777642 556666666 77777777777763
Q ss_pred cCCCCCCcceEeEEEecCccccccCCccccccCCCcEEecCCCCCCCCCCcccCCCCCcceEEecCCCCCCCCCCCcCCC
Q 002278 221 EIPYNIGFLQVATLSLQGNKLTGKIPEVIGLMQALAVLDLSENELVGPIPPILGNLSYTGKLYLHGNKLTGPIPPELGNM 300 (943)
Q Consensus 221 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 300 (943)
+|. .+ .++|+.|++++|.+.+..+..|..+++|+.|+|++|++++..+..|..+
T Consensus 187 -l~~-----------------------~~--~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l 240 (332)
T 2ft3_A 187 -IPK-----------------------DL--PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL 240 (332)
T ss_dssp -CCS-----------------------SS--CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGC
T ss_pred -cCc-----------------------cc--cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCC
Confidence 222 11 1456666777777766666667777777777777777776666667777
Q ss_pred CcCcEEEcccCccccccccccCCcccceEEEccccccCCcCcccccCC------CcCcEEEeeCCccc--Cccccccccc
Q 002278 301 SKLSYLQLQNNQLVGTIPAELGKLEQLFELNLADNNLEGPIPHNISSC------TALNQFNVHGNRLS--GAIPSSFRNL 372 (943)
Q Consensus 301 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l------~~L~~L~L~~N~l~--~~~~~~~~~l 372 (943)
++|++|++++|+++ .+|..+..+++|+.|++++|+|++..+..|..+ ..|+.|++++|.+. +..|.+|..+
T Consensus 241 ~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l 319 (332)
T 2ft3_A 241 PTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCV 319 (332)
T ss_dssp TTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTB
T ss_pred CCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCccccccc
Confidence 77777777777776 566667777777777777777776666655543 45666777777665 4556666666
Q ss_pred CccceeeccCCc
Q 002278 373 GSLTYLNLSRNN 384 (943)
Q Consensus 373 ~~L~~L~L~~N~ 384 (943)
++|+.|++++|+
T Consensus 320 ~~L~~l~l~~n~ 331 (332)
T 2ft3_A 320 TDRLAIQFGNYK 331 (332)
T ss_dssp CCSTTEEC----
T ss_pred chhhhhhccccc
Confidence 666666666653
No 292
>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A
Probab=100.00 E-value=5.3e-35 Score=323.49 Aligned_cols=246 Identities=15% Similarity=0.126 Sum_probs=187.9
Q ss_pred HhhccccceEEeeeceEEEEEEEecCCceEEEEEecccC--------cccHHHHHHHHHHHhcCC---------CCCcce
Q 002278 614 STENLSEKYIVGYGASSTVYKCALKNSRPIAVKKLYNQY--------PHNLREFETELETIGSIR---------HRNIVS 676 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~--------~~~~~~~~~E~~~l~~l~---------h~niv~ 676 (943)
..++|+..+.||+|+||+||+|++ +++.||||++.... ....+.+.+|+++++.++ |||||+
T Consensus 18 ~~~~y~~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~ 96 (336)
T 2vuw_A 18 PTEKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIG 96 (336)
T ss_dssp CHHHHHTCEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCC
T ss_pred ccccchheeeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhh
Confidence 357899999999999999999998 57999999997542 234578889999988885 777777
Q ss_pred eeeEEe-----------------c-------------CCcceEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHH
Q 002278 677 LHGYAL-----------------S-------------PYGNLLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQ 726 (943)
Q Consensus 677 l~~~~~-----------------~-------------~~~~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~ 726 (943)
+.+++. + ....++||||+++|++.+.+. ...+++.++..++.|++.
T Consensus 97 l~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~----~~~~~~~~~~~i~~qi~~ 172 (336)
T 2vuw_A 97 LNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMR----TKLSSLATAKSILHQLTA 172 (336)
T ss_dssp EEEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGT----TTCCCHHHHHHHHHHHHH
T ss_pred hcceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHH----hcCCCHHHHHHHHHHHHH
Confidence 766643 2 678899999999998777764 245899999999999999
Q ss_pred HHHHhh-hCCCCCeEecCCCCccEEECCCC--------------------ceeecccccccccCCCCCceeeeEecccce
Q 002278 727 GLAYLH-HDCNPRIIHRDVKSSNILIDENF--------------------DAHLSDFGIARCIPTAMPHASTFVLGTIGY 785 (943)
Q Consensus 727 ~l~~LH-~~~~~~ivH~Dlkp~Nill~~~~--------------------~~kl~DFGla~~~~~~~~~~~~~~~gt~~y 785 (943)
||+||| +. +|+||||||+|||++.++ .+||+|||+|+..... ...||+.|
T Consensus 173 aL~~lH~~~---~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~~------~~~gt~~y 243 (336)
T 2vuw_A 173 SLAVAEASL---RFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDG------IVVFCDVS 243 (336)
T ss_dssp HHHHHHHHH---CCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEETT------EEECCCCT
T ss_pred HHHHHHHhC---CEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCCC------cEEEeecc
Confidence 999999 88 999999999999999887 8999999999876532 34699999
Q ss_pred eCccccccCCCCCcchhhhHHHH-HHHHHhCCCCCCCCccHHHHHHHhccccccccccCcccccCccCHHHHHHHHHHHH
Q 002278 786 IDPEYAHTSRLNEKSDVYSFGIV-LLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPEVSVTCVDLSAVRKTFQLAL 864 (943)
Q Consensus 786 ~aPE~~~~~~~~~~~DvwSlGvi-l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 864 (943)
+|||++.+.. +.++||||+|++ .+++++|..||.+......................+. ........+.+++.
T Consensus 244 ~aPE~~~g~~-~~~~Diwsl~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~s~~~~dli~ 317 (336)
T 2vuw_A 244 MDEDLFTGDG-DYQFDIYRLMKKENNNRWGEYHPYSNVLWLHYLTDKMLKQMTFKTKCNTP-----AMKQIKRKIQEFHR 317 (336)
T ss_dssp TCSGGGCCCS-SHHHHHHHHHHHHHTTCTTSCCTHHHHHHHHHHHHHHHHTCCCSSCCCSH-----HHHHHHHHHHHHHH
T ss_pred cChhhhcCCC-ccceehhhhhCCCCcccccccCCCcchhhhhHHHHhhhhhhccCcccchh-----hhhhcCHHHHHHHH
Confidence 9999998776 899999998777 7789999999954211111111111010111110000 01234567889999
Q ss_pred HccCCCCCCCCCHHHHH-HHH
Q 002278 865 LCTKRYPSERPTMQEVA-RVL 884 (943)
Q Consensus 865 ~cl~~dP~~RPt~~el~-~~L 884 (943)
+||+.| |+.|++ +|-
T Consensus 318 ~~L~~d-----sa~e~l~~Hp 333 (336)
T 2vuw_A 318 TMLNFS-----SATDLLCQHS 333 (336)
T ss_dssp HGGGSS-----SHHHHHHHCG
T ss_pred HHhccC-----CHHHHHhcCC
Confidence 999966 999999 764
No 293
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=4e-33 Score=307.61 Aligned_cols=287 Identities=23% Similarity=0.281 Sum_probs=153.5
Q ss_pred EEcCCCCCccccCCCcCCCCCCCEEEeeCCcccccCCCCccCCCCCcEEeccCCCcCCccchhccccccceEEEecCccc
Q 002278 43 LNLSSLNLGGEISPSIGDLRNLQSIDFQGNKLTGQIPDEIGNCGSLVHIELSDNSLYGDIPFSISKLKQLEFLNLKNNQL 122 (943)
Q Consensus 43 L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l 122 (943)
++++++.++ .+|..+. +.|++|+|++|+|++..+..|.++++|++|+|++|++++..|..|+++++|++|+|++|++
T Consensus 36 l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 112 (330)
T 1xku_A 36 VQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL 112 (330)
T ss_dssp EECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCC
T ss_pred EEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcC
Confidence 444455555 4555443 4667777777777755555677777777777777777765566677777777777777776
Q ss_pred ccCCCcccCCCCCCcEEEEeccccccccchhccccccceeccccCCccCCCCCcccccccccceeeccceecccccCCCC
Q 002278 123 TGPIPSTLTQIPNLKTLDLARNQLTGEIPRLIYWNEVLQYLGLRGNALTGMLSPDMCQLTGLWYFDVRGNNLTGTIPDSI 202 (943)
Q Consensus 123 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l 202 (943)
+ .+|..+. ++|++|++++|++++..+..|..+++|++|++++|.++. .+..+..+
T Consensus 113 ~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----------------------~~~~~~~~ 167 (330)
T 1xku_A 113 K-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS----------------------SGIENGAF 167 (330)
T ss_dssp S-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG----------------------GGBCTTGG
T ss_pred C-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc----------------------cCcChhhc
Confidence 6 3444332 566666666666655444444444444444444444432 12445566
Q ss_pred cCCCcccEEEeecccccCcCCCCCCcceEeEEEecCccccccCCccccccCCCcEEecCCCCCCCCCCcccCCCCCcceE
Q 002278 203 GNCTSFEILDISYNQITGEIPYNIGFLQVATLSLQGNKLTGKIPEVIGLMQALAVLDLSENELVGPIPPILGNLSYTGKL 282 (943)
Q Consensus 203 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 282 (943)
.++++|++|++++|+++. +|..+. ++|+.|++++|.+.+..+..|..+++|+.|
T Consensus 168 ~~l~~L~~L~l~~n~l~~-l~~~~~-------------------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 221 (330)
T 1xku_A 168 QGMKKLSYIRIADTNITT-IPQGLP-------------------------PSLTELHLDGNKITKVDAASLKGLNNLAKL 221 (330)
T ss_dssp GGCTTCCEEECCSSCCCS-CCSSCC-------------------------TTCSEEECTTSCCCEECTGGGTTCTTCCEE
T ss_pred cCCCCcCEEECCCCcccc-CCcccc-------------------------ccCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence 667777777777776662 222111 234444444444444334444444444444
Q ss_pred EecCCCCCCCCCCCcCCCCcCcEEEcccCccccccccccCCcccceEEEccccccCCcCcccccC------CCcCcEEEe
Q 002278 283 YLHGNKLTGPIPPELGNMSKLSYLQLQNNQLVGTIPAELGKLEQLFELNLADNNLEGPIPHNISS------CTALNQFNV 356 (943)
Q Consensus 283 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~------l~~L~~L~L 356 (943)
+|++|.+++..+..|..+++|++|++++|+++ .+|..+..+++|++|++++|+|+++.+..|+. .+.|+.|++
T Consensus 222 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l 300 (330)
T 1xku_A 222 GLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSL 300 (330)
T ss_dssp ECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEEC
T ss_pred ECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEe
Confidence 44444444444444444555555555555554 44444455555555555555555444444432 245556666
Q ss_pred eCCcccC--cccccccccCccceeeccCCc
Q 002278 357 HGNRLSG--AIPSSFRNLGSLTYLNLSRNN 384 (943)
Q Consensus 357 ~~N~l~~--~~~~~~~~l~~L~~L~L~~N~ 384 (943)
++|.+.. +.|..|..+.+|+.++|++|+
T Consensus 301 ~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 301 FSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred ecCcccccccCccccccccceeEEEecccC
Confidence 6666542 445556666666666666653
No 294
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=100.00 E-value=2.7e-34 Score=326.32 Aligned_cols=244 Identities=14% Similarity=0.195 Sum_probs=181.1
Q ss_pred HhhccccceEEeeeceEEEEEEEec-CCceEEEEEecccCc---ccHHHHHHHHHHHhcCCC-CCcce---------eee
Q 002278 614 STENLSEKYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYP---HNLREFETELETIGSIRH-RNIVS---------LHG 679 (943)
Q Consensus 614 ~~~~~~~~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h-~niv~---------l~~ 679 (943)
...+|...+.||+|+||+||+|.+. +++.||||++..... ...+.+.+|+.+++.++| ++... ...
T Consensus 76 ~~~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~ 155 (413)
T 3dzo_A 76 RPRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFD 155 (413)
T ss_dssp CCEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCE
T ss_pred CceeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchh
Confidence 3456888899999999999999965 688999999873332 235678999999999987 32211 111
Q ss_pred E------------Eec-----CCcceEEEEEccCCChhhhccC----CCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCC
Q 002278 680 Y------------ALS-----PYGNLLFYDYMVNGSLWDLLHG----PSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPR 738 (943)
Q Consensus 680 ~------------~~~-----~~~~~lv~e~~~~g~L~~~l~~----~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ 738 (943)
. +.. ....+++|++ .+++|.+++.. ......+++..++.++.|++.||+|||++ +
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ 231 (413)
T 3dzo_A 156 LVKDPQKKKMIRVRLDERDMWVLSRFFLYPR-MQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHY---G 231 (413)
T ss_dssp EEECCC---------------CCSEEEEEEC-CSEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHT---T
T ss_pred hcccCCCCccccccCCCccccccceEEEeeh-hcCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHhC---C
Confidence 1 111 1123555554 57899998841 11345688899999999999999999999 9
Q ss_pred eEecCCCCccEEECCCCceeecccccccccCCCCCceeeeEecccceeCcccc----------ccCCCCCcchhhhHHHH
Q 002278 739 IIHRDVKSSNILIDENFDAHLSDFGIARCIPTAMPHASTFVLGTIGYIDPEYA----------HTSRLNEKSDVYSFGIV 808 (943)
Q Consensus 739 ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~----------~~~~~~~~~DvwSlGvi 808 (943)
|+||||||+|||++.++.+||+|||+++..... .....| +.|+|||++ .+..++.++|||||||+
T Consensus 232 iiHrDiKp~NILl~~~~~~kL~DFG~a~~~~~~----~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvi 306 (413)
T 3dzo_A 232 LVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGAS----AVSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLA 306 (413)
T ss_dssp EECSCCCGGGEEECTTCCEEECCGGGCEETTEE----ECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHH
T ss_pred cccCCcccceEEEecCCeEEEEeccceeecCCc----cccCCC-CceeCchhhhccccccccccCcCCCchhhHHHHHHH
Confidence 999999999999999999999999999865432 333457 999999998 55568899999999999
Q ss_pred HHHHHhCCCCCCCCccHHHHHHHhccccccccccCcccccCccCHHHHHHHHHHHHHccCCCCCCCCCHHHHHHH
Q 002278 809 LLEILTGKKAVDNESNLHQLIMSKADDNTVMEAVDPEVSVTCVDLSAVRKTFQLALLCTKRYPSERPTMQEVARV 883 (943)
Q Consensus 809 l~elltG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~cl~~dP~~RPt~~el~~~ 883 (943)
+|||+||+.||......... ..... ..+.+ ...+.+++..||+.||++||++.+++++
T Consensus 307 l~elltg~~Pf~~~~~~~~~-------~~~~~-~~~~~---------~~~~~~li~~~l~~dP~~Rpt~~~~l~~ 364 (413)
T 3dzo_A 307 IYWIWCADLPNTDDAALGGS-------EWIFR-SCKNI---------PQPVRALLEGFLRYPKEDRLLPLQAMET 364 (413)
T ss_dssp HHHHHHSSCCCCTTGGGSCS-------GGGGS-SCCCC---------CHHHHHHHHHHTCSSGGGSCCHHHHTTS
T ss_pred HHHHHHCCCCCCCcchhhhH-------HHHHh-hcccC---------CHHHHHHHHHHccCChhhCcCHHHHHhC
Confidence 99999999999865432110 00000 00111 2567899999999999999998777653
No 295
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=1.1e-32 Score=304.40 Aligned_cols=288 Identities=22% Similarity=0.283 Sum_probs=179.7
Q ss_pred cccEEEeecccccCcCCCCCCcceEeEEEecCccccccCCccccccCCCcEEecCCCCCCCCCCcccCCCCCcceEEecC
Q 002278 207 SFEILDISYNQITGEIPYNIGFLQVATLSLQGNKLTGKIPEVIGLMQALAVLDLSENELVGPIPPILGNLSYTGKLYLHG 286 (943)
Q Consensus 207 ~L~~L~Ls~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 286 (943)
+|+.+++++|.++ .+|..+. .+++.|++++|.+++..|..|..+++|++|+|++|.+++..|..|.++++|++|+|++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~-~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS-PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred cCCEEECCCCCcc-ccCCCCC-CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 5666666666665 3343332 3455566666666555566666777777777777777766666677777777777777
Q ss_pred CCCCCCCCCCcCCCCcCcEEEcccCccccccccccCCcccceEEEccccccC--CcCcccccCCCcCcEEEeeCCcccCc
Q 002278 287 NKLTGPIPPELGNMSKLSYLQLQNNQLVGTIPAELGKLEQLFELNLADNNLE--GPIPHNISSCTALNQFNVHGNRLSGA 364 (943)
Q Consensus 287 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~L~L~~N~l~~~ 364 (943)
|+++ .+|..+. ++|++|++++|++++..+..|..+++|+.|++++|.++ +..+..+..+ +|+.|++++|++++
T Consensus 112 n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~- 186 (332)
T 2ft3_A 112 NHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG- 186 (332)
T ss_dssp SCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-
T ss_pred CcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-
Confidence 7766 3344333 56777777777776555556666777777777777664 2555566666 66666666666664
Q ss_pred ccccccccCccceeeccCCcCCCCCCCCCCCCCCccEEecCCCcCCCccCCCcccccccceeecccccccccCCccccCC
Q 002278 365 IPSSFRNLGSLTYLNLSRNNFKGKVPTELGRIINLDTLDLSVNNFSGSVPASIGDLEHLLTLNLSRNHLNGLLPAEFGNL 444 (943)
Q Consensus 365 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 444 (943)
+|..+. ++|++|+|++|++++..+..+..+++|+.|++++|++++..+..+..+++|+.|+|++|+++ .+|..+..+
T Consensus 187 l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l 263 (332)
T 2ft3_A 187 IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDL 263 (332)
T ss_dssp CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGC
T ss_pred cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcC
Confidence 333332 56666666666666665566666666666666666666655556666666666666666666 455666666
Q ss_pred CccceecccCccccccCChhhhcc------cccceecccCcccC--CCCCCcCccccCCcccccCCcc
Q 002278 445 RSIQTIDMSFNQLSGSIPAELGQL------QNIISLILNNNNLQ--GGIPDQLSNCFSLSNLNVSYNN 504 (943)
Q Consensus 445 ~~L~~L~Ls~N~l~~~~p~~~~~l------~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~L~ls~N~ 504 (943)
++|+.|++++|+|++..+..|..+ .+|+.|++++|++. +..|..+..+++|+.+++++|+
T Consensus 264 ~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 264 KLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp TTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 666666666666665444555432 45666667776665 4555666666666666666663
No 296
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=1.8e-32 Score=302.39 Aligned_cols=269 Identities=22% Similarity=0.282 Sum_probs=137.8
Q ss_pred cceeccccCCccCCCCCcccccccccceeeccceecccccCCCCcCCCcccEEEeecccccCcCCCCCCcceEeEEEecC
Q 002278 159 VLQYLGLRGNALTGMLSPDMCQLTGLWYFDVRGNNLTGTIPDSIGNCTSFEILDISYNQITGEIPYNIGFLQVATLSLQG 238 (943)
Q Consensus 159 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~L~~L~L~~ 238 (943)
.|++|+|++|+++++.+..|..+++|++|+|++|++++..|..|.++++|++|++++|+++ .+|..+. .+|+.|++++
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-~~L~~L~l~~ 130 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP-KTLQELRVHE 130 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC-TTCCEEECCS
T ss_pred CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc-ccccEEECCC
Confidence 3444444444444444445556666666666666666556666777777777777777766 2332221 2333333333
Q ss_pred ccccccCCccccccCCCcEEecCCCCCCCCCCcccCCCCCcceEEecCCCCCCCCCCCcCCCCcCcEEEcccCccccccc
Q 002278 239 NKLTGKIPEVIGLMQALAVLDLSENELVGPIPPILGNLSYTGKLYLHGNKLTGPIPPELGNMSKLSYLQLQNNQLVGTIP 318 (943)
Q Consensus 239 n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 318 (943)
|.+++..+..+..+++|+.|++++|.+.. .+..+..|..+++|++|++++|.++. +|
T Consensus 131 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----------------------~~~~~~~~~~l~~L~~L~l~~n~l~~-l~ 187 (330)
T 1xku_A 131 NEITKVRKSVFNGLNQMIVVELGTNPLKS----------------------SGIENGAFQGMKKLSYIRIADTNITT-IP 187 (330)
T ss_dssp SCCCBBCHHHHTTCTTCCEEECCSSCCCG----------------------GGBCTTGGGGCTTCCEEECCSSCCCS-CC
T ss_pred CcccccCHhHhcCCccccEEECCCCcCCc----------------------cCcChhhccCCCCcCEEECCCCcccc-CC
Confidence 33333333444444444555444444432 01334445555555555555555552 33
Q ss_pred cccCCcccceEEEccccccCCcCcccccCCCcCcEEEeeCCcccCcccccccccCccceeeccCCcCCCCCCCCCCCCCC
Q 002278 319 AELGKLEQLFELNLADNNLEGPIPHNISSCTALNQFNVHGNRLSGAIPSSFRNLGSLTYLNLSRNNFKGKVPTELGRIIN 398 (943)
Q Consensus 319 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 398 (943)
..+. ++|++|++++|++++..|..|..+++|+.|++++|++++..+..|..+++|+.|+|++|+++ .+|..+..+++
T Consensus 188 ~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~ 264 (330)
T 1xku_A 188 QGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKY 264 (330)
T ss_dssp SSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSS
T ss_pred cccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCC
Confidence 3222 45555566666555555555555566666666666665555555666666666666666665 45555555666
Q ss_pred ccEEecCCCcCCCccCCCcccc------cccceeecccccccc--cCCccccCCCccceecccCc
Q 002278 399 LDTLDLSVNNFSGSVPASIGDL------EHLLTLNLSRNHLNG--LLPAEFGNLRSIQTIDMSFN 455 (943)
Q Consensus 399 L~~L~Ls~N~l~~~~~~~~~~l------~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~Ls~N 455 (943)
|+.|++++|+|++..+..|... ..|+.|++++|.+.. +.|..|..+.+|+.++|++|
T Consensus 265 L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 265 IQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred cCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 6666666666654444444321 334444444444431 23344444444444444444
No 297
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=4.3e-33 Score=306.01 Aligned_cols=276 Identities=17% Similarity=0.283 Sum_probs=183.2
Q ss_pred ccccccc-CccccCCCCC--CCCCCCCCCcceeEecCCCCcEEEEEcCCCCCccccCCCc--CCCCCCCEEEeeCCcccc
Q 002278 2 AIKASFS-NLANVLLDWD--DVHNSDFCSWRGVFCDNSSLSVVSLNLSSLNLGGEISPSI--GDLRNLQSIDFQGNKLTG 76 (943)
Q Consensus 2 ~~~~~~~-~~~~~~~~w~--~~~~~~~c~w~gv~c~~~~~~v~~L~l~~~~~~~~~~~~l--~~l~~L~~L~Ls~n~l~~ 76 (943)
+||+++. |+.+.+++|. ...+.++|.|.|+.|+.. +..+ .....+++|+|++|+|+
T Consensus 34 ~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~------------------~~~l~~~~~~~l~~L~L~~n~l~- 94 (328)
T 4fcg_A 34 QWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKAT------------------ADLLEDATQPGRVALELRSVPLP- 94 (328)
T ss_dssp HHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHH------------------HHHHHHHTSTTCCEEEEESSCCS-
T ss_pred HHHHhccCCchhhhhhhcccccccccccccCCcchhhh------------------HHHHhcccccceeEEEccCCCch-
Confidence 5788885 7778889993 113579999999999531 1111 12356677777777776
Q ss_pred cCCCCccCCCCCcEEeccCCCcCCccchhccccccceEEEecCcccccCCCcccCCCCCCcEEEEeccccccccchhccc
Q 002278 77 QIPDEIGNCGSLVHIELSDNSLYGDIPFSISKLKQLEFLNLKNNQLTGPIPSTLTQIPNLKTLDLARNQLTGEIPRLIYW 156 (943)
Q Consensus 77 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 156 (943)
.+|..+.++++|++|+|++|.++ .+|..|+.+++|++|+|++|+++ .+|..|..+++|++|+|++|++.+.+|..+..
T Consensus 95 ~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~ 172 (328)
T 4fcg_A 95 QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAS 172 (328)
T ss_dssp SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEE
T ss_pred hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhh
Confidence 66666777777777777777777 66777777777777777777777 66777777777777777777766666655432
Q ss_pred cccceeccccCCccCCCCCcccccccccceeeccceecccccCCCCcCCCcccEEEeecccccCcCCCCCCcceEeEEEe
Q 002278 157 NEVLQYLGLRGNALTGMLSPDMCQLTGLWYFDVRGNNLTGTIPDSIGNCTSFEILDISYNQITGEIPYNIGFLQVATLSL 236 (943)
Q Consensus 157 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~L~~L~L 236 (943)
. ..+..+..+++|++|+|++|+++ .+|..+.++++|++|+|++|+++
T Consensus 173 ~---------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~----------------- 219 (328)
T 4fcg_A 173 T---------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS----------------- 219 (328)
T ss_dssp E---------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-----------------
T ss_pred c---------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-----------------
Confidence 1 01234556666777777777776 55666777777777777777665
Q ss_pred cCccccccCCccccccCCCcEEecCCCCCCCCCCcccCCCCCcceEEecCCCCCCCCCCCcCCCCcCcEEEcccCccccc
Q 002278 237 QGNKLTGKIPEVIGLMQALAVLDLSENELVGPIPPILGNLSYTGKLYLHGNKLTGPIPPELGNMSKLSYLQLQNNQLVGT 316 (943)
Q Consensus 237 ~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 316 (943)
.+|..+..+++|++|+|++|.+.+.+|..|..+++|+.|+|++|++.+.+|..+..+++|++|+|++|.+.+.
T Consensus 220 -------~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~ 292 (328)
T 4fcg_A 220 -------ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR 292 (328)
T ss_dssp -------CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCC
T ss_pred -------cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhh
Confidence 2334456666777777777666666666666666666666666666666666666666666666666666666
Q ss_pred cccccCCcccceEEEccccccC
Q 002278 317 IPAELGKLEQLFELNLADNNLE 338 (943)
Q Consensus 317 ~~~~~~~l~~L~~L~L~~N~l~ 338 (943)
+|..++.+++|+.+++..|.+.
T Consensus 293 iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 293 LPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CCGGGGGSCTTCEEECCGGGSC
T ss_pred ccHHHhhccCceEEeCCHHHHH
Confidence 6666666666666666655444
No 298
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.98 E-value=4.3e-36 Score=347.90 Aligned_cols=365 Identities=20% Similarity=0.196 Sum_probs=170.5
Q ss_pred CCCCEEEeeCCcccccCCCC-ccCCCCCcEEeccCCCcCC----ccchhccccccceEEEecCcccccCCCcccC-CCC-
Q 002278 62 RNLQSIDFQGNKLTGQIPDE-IGNCGSLVHIELSDNSLYG----DIPFSISKLKQLEFLNLKNNQLTGPIPSTLT-QIP- 134 (943)
Q Consensus 62 ~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~- 134 (943)
++|++|||++|+++...... +..+++|++|+|++|++++ .++..+..+++|++|+|++|.++...+..+. .++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 35666666666665332222 5556666666666666653 2344455556666666666665543222221 233
Q ss_pred ---CCcEEEEecccccc----ccchhccccccceeccccCCccCCCCCcccccccccceeeccceecccccCCCCcCCCc
Q 002278 135 ---NLKTLDLARNQLTG----EIPRLIYWNEVLQYLGLRGNALTGMLSPDMCQLTGLWYFDVRGNNLTGTIPDSIGNCTS 207 (943)
Q Consensus 135 ---~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~ 207 (943)
+|++|+|++|+|+. .++..+..+++|++|+|++|.+++..+..+.. ..+...++
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~-------------------~l~~~~~~ 143 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCE-------------------GLLDPQCR 143 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHH-------------------HHTSTTCC
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHH-------------------HHhcCCCc
Confidence 45555555555552 23444444444444444444433211111110 00111233
Q ss_pred ccEEEeecccccCcCCCCCCcceEeEEEecCccccccCCccccccCCCcEEecCCCCCCCCCCcccC-----CCCCcceE
Q 002278 208 FEILDISYNQITGEIPYNIGFLQVATLSLQGNKLTGKIPEVIGLMQALAVLDLSENELVGPIPPILG-----NLSYTGKL 282 (943)
Q Consensus 208 L~~L~Ls~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~-----~l~~L~~L 282 (943)
|++|++++|++++... ..++..+..+++|+.|++++|.+.+..+..+. ..++|++|
T Consensus 144 L~~L~L~~n~l~~~~~-------------------~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L 204 (461)
T 1z7x_W 144 LEKLQLEYCSLSAASC-------------------EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEAL 204 (461)
T ss_dssp CCEEECTTSCCBGGGH-------------------HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEE
T ss_pred ceEEECCCCCCCHHHH-------------------HHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEE
Confidence 4444444444331100 01233344455555555555555432222221 13345555
Q ss_pred EecCCCCCCC----CCCCcCCCCcCcEEEcccCcccccc-----ccccCCcccceEEEccccccCCc----CcccccCCC
Q 002278 283 YLHGNKLTGP----IPPELGNMSKLSYLQLQNNQLVGTI-----PAELGKLEQLFELNLADNNLEGP----IPHNISSCT 349 (943)
Q Consensus 283 ~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~-----~~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~ 349 (943)
+|++|.++.. ++..+..+++|++|++++|.+++.. +..+..+++|++|++++|+++.. ++..+..++
T Consensus 205 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 284 (461)
T 1z7x_W 205 KLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKE 284 (461)
T ss_dssp ECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCT
T ss_pred EccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCC
Confidence 5555554432 2334444555555666555554321 12222345555555555555432 333444445
Q ss_pred cCcEEEeeCCcccCcccccccccCccceeeccCCcCCCCCCCCCCCCCCccEEecCCCcCCCc----cCCCcccccccce
Q 002278 350 ALNQFNVHGNRLSGAIPSSFRNLGSLTYLNLSRNNFKGKVPTELGRIINLDTLDLSVNNFSGS----VPASIGDLEHLLT 425 (943)
Q Consensus 350 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~ 425 (943)
+|++|++++|.+....+..+... .....++|+.|++++|.+++. ++..+..+++|++
T Consensus 285 ~L~~L~Ls~n~i~~~~~~~l~~~-------------------l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 345 (461)
T 1z7x_W 285 SLKELSLAGNELGDEGARLLCET-------------------LLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLE 345 (461)
T ss_dssp TCCEEECTTCCCHHHHHHHHHHH-------------------HTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCE
T ss_pred CcceEECCCCCCchHHHHHHHHH-------------------hccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccE
Confidence 55555555555443222222211 000113455555555555432 2334445566666
Q ss_pred eecccccccccCCccccC-----CCccceecccCccccc----cCChhhhcccccceecccCcccCC
Q 002278 426 LNLSRNHLNGLLPAEFGN-----LRSIQTIDMSFNQLSG----SIPAELGQLQNIISLILNNNNLQG 483 (943)
Q Consensus 426 L~Ls~N~l~~~~p~~~~~-----l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~ 483 (943)
|+|++|++++..+..+.. .++|++|+|++|++++ .+|..+..+++|++|+|++|++++
T Consensus 346 L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 346 LQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp EECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred EEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 666666665443333322 4566666666666664 556666666667777777776654
No 299
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.3e-35 Score=343.86 Aligned_cols=388 Identities=20% Similarity=0.162 Sum_probs=226.5
Q ss_pred cEEEEEcCCCCCccccCCC-cCCCCCCCEEEeeCCcccc----cCCCCccCCCCCcEEeccCCCcCCccchhcc-ccc--
Q 002278 39 SVVSLNLSSLNLGGEISPS-IGDLRNLQSIDFQGNKLTG----QIPDEIGNCGSLVHIELSDNSLYGDIPFSIS-KLK-- 110 (943)
Q Consensus 39 ~v~~L~l~~~~~~~~~~~~-l~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~-- 110 (943)
+++.|||++|+++...... +..+++|++|+|++|++++ .++..+..+++|++|+|++|++.+..+..+. .++
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 83 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence 5789999999998654444 7889999999999999985 4577788899999999999999865555544 465
Q ss_pred --cceEEEecCccccc----CCCcccCCCCCCcEEEEeccccccccchhccc-----cccceeccccCCccCCCC----C
Q 002278 111 --QLEFLNLKNNQLTG----PIPSTLTQIPNLKTLDLARNQLTGEIPRLIYW-----NEVLQYLGLRGNALTGML----S 175 (943)
Q Consensus 111 --~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----l~~L~~L~L~~n~l~~~~----~ 175 (943)
+|++|+|++|+++. .++..|..+++|++|+|++|.++...+..+.. ..+|++|+|++|++++.. +
T Consensus 84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 163 (461)
T 1z7x_W 84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 163 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH
Confidence 79999999999984 45889999999999999999998655554432 345777777777766532 2
Q ss_pred cccccccccceeeccceecccccCCCCc-----CCCcccEEEeecccccCcCCCCCCcceEeEEEecCccccccCCcccc
Q 002278 176 PDMCQLTGLWYFDVRGNNLTGTIPDSIG-----NCTSFEILDISYNQITGEIPYNIGFLQVATLSLQGNKLTGKIPEVIG 250 (943)
Q Consensus 176 ~~~~~l~~L~~L~L~~N~i~~~~~~~l~-----~l~~L~~L~Ls~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 250 (943)
..+..+++|++|++++|.++...+..+. .+++|++|++++|.+++... ..++..+.
T Consensus 164 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~-------------------~~l~~~l~ 224 (461)
T 1z7x_W 164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC-------------------RDLCGIVA 224 (461)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHH-------------------HHHHHHHH
T ss_pred HHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHH-------------------HHHHHHHH
Confidence 2233345555555555554432222221 12344444444444331100 01344555
Q ss_pred ccCCCcEEecCCCCCCCCC-----CcccCCCCCcceEEecCCCCCCC----CCCCcCCCCcCcEEEcccCcccccccccc
Q 002278 251 LMQALAVLDLSENELVGPI-----PPILGNLSYTGKLYLHGNKLTGP----IPPELGNMSKLSYLQLQNNQLVGTIPAEL 321 (943)
Q Consensus 251 ~l~~L~~L~Ls~N~l~~~~-----~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 321 (943)
.+++|+.|++++|.+.+.. +..+..+++|++|+|++|.++.. ++..+..+++|++|++++|.+.+..+..+
T Consensus 225 ~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l 304 (461)
T 1z7x_W 225 SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 304 (461)
T ss_dssp HCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHH
T ss_pred hCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHH
Confidence 5666666666666654321 11122344455555555544421 23333344444444444444433222222
Q ss_pred CCcccceEEEccccccCCcCcccccCCCcCcEEEeeCCcccCc----ccccccccCccceeeccCCcCCCCCCCCCCC--
Q 002278 322 GKLEQLFELNLADNNLEGPIPHNISSCTALNQFNVHGNRLSGA----IPSSFRNLGSLTYLNLSRNNFKGKVPTELGR-- 395 (943)
Q Consensus 322 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-- 395 (943)
... .....++|+.|++++|.+++. ++..+..+++|++|+|++|++++..+..+..
T Consensus 305 ~~~-------------------l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l 365 (461)
T 1z7x_W 305 CET-------------------LLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGL 365 (461)
T ss_dssp HHH-------------------HTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHH
T ss_pred HHH-------------------hccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHH
Confidence 211 001113555555555555433 3344455566666666666555332222221
Q ss_pred ---CCCccEEecCCCcCCC----ccCCCcccccccceeecccccccccCCcccc-----CCCccceecccCccccccCCh
Q 002278 396 ---IINLDTLDLSVNNFSG----SVPASIGDLEHLLTLNLSRNHLNGLLPAEFG-----NLRSIQTIDMSFNQLSGSIPA 463 (943)
Q Consensus 396 ---l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-----~l~~L~~L~Ls~N~l~~~~p~ 463 (943)
.++|+.|++++|.+++ .+|..+..+++|++|+|++|++++.....+. ....|+.|++.++.+....+.
T Consensus 366 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~ 445 (461)
T 1z7x_W 366 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMED 445 (461)
T ss_dssp TSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHH
T ss_pred cCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHH
Confidence 4567777777777764 5666677777788888888877643111111 123456666665555533333
Q ss_pred h
Q 002278 464 E 464 (943)
Q Consensus 464 ~ 464 (943)
.
T Consensus 446 ~ 446 (461)
T 1z7x_W 446 R 446 (461)
T ss_dssp H
T ss_pred H
Confidence 3
No 300
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=2e-31 Score=296.78 Aligned_cols=286 Identities=21% Similarity=0.236 Sum_probs=189.4
Q ss_pred CCCCCCcceeEecCCCCcEEEEEcCCCCCccccCCCcCCCCCCCEEEeeCCcccccCCCCccCCCCCcEEeccCCCcCCc
Q 002278 22 NSDFCSWRGVFCDNSSLSVVSLNLSSLNLGGEISPSIGDLRNLQSIDFQGNKLTGQIPDEIGNCGSLVHIELSDNSLYGD 101 (943)
Q Consensus 22 ~~~~c~w~gv~c~~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 101 (943)
...+|.|.|+ |+ +++++++ .+|..+. ++|++|+|++|+|++..+..|.++++|++|+|++|++++.
T Consensus 26 ~~~~C~~~~~-c~----------~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~ 91 (353)
T 2z80_A 26 ASLSCDRNGI-CK----------GSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI 91 (353)
T ss_dssp -CCEECTTSE-EE----------CCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEE
T ss_pred cCCCCCCCeE-ee----------CCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCcc
Confidence 4578899987 64 4667777 6777665 4888999999988866666788888888888888888876
Q ss_pred cchhccccccceEEEecCcccccCCCcccCCCCCCcEEEEeccccccccc-hhccccccceeccccCC-ccCCCCCcccc
Q 002278 102 IPFSISKLKQLEFLNLKNNQLTGPIPSTLTQIPNLKTLDLARNQLTGEIP-RLIYWNEVLQYLGLRGN-ALTGMLSPDMC 179 (943)
Q Consensus 102 ~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~~~~~~ 179 (943)
.|.+|+++++|++|+|++|++++..+..|.++++|++|+|++|+++...+ ..+..+++|++|++++| .++.+.+..+.
T Consensus 92 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 171 (353)
T 2z80_A 92 EEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 171 (353)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTT
T ss_pred CHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHcc
Confidence 67778888888888888888886555557888888888888888774333 35556666666666666 35555555555
Q ss_pred cccccceeeccceecccccCCCCcCCCcccEEEeecccccCcCCCCCCcceEeEEEecCccccccCCccccccCCCcEEe
Q 002278 180 QLTGLWYFDVRGNNLTGTIPDSIGNCTSFEILDISYNQITGEIPYNIGFLQVATLSLQGNKLTGKIPEVIGLMQALAVLD 259 (943)
Q Consensus 180 ~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 259 (943)
.+++|++|++++|++++..|..+.++++|++|++++|+++ ...+..+..+++|+.|+
T Consensus 172 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-----------------------~~~~~~~~~~~~L~~L~ 228 (353)
T 2z80_A 172 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-----------------------LLLEIFVDVTSSVECLE 228 (353)
T ss_dssp TCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-----------------------THHHHHHHHTTTEEEEE
T ss_pred CCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-----------------------cchhhhhhhcccccEEE
Confidence 5555555555555555555555555555555555555543 22223344566777777
Q ss_pred cCCCCCCCCCCcccCCCCCcceEEecCCCCCCCCCCCcCCCCcCcEEEcccCcccc----ccccccCCcccceEEEcccc
Q 002278 260 LSENELVGPIPPILGNLSYTGKLYLHGNKLTGPIPPELGNMSKLSYLQLQNNQLVG----TIPAELGKLEQLFELNLADN 335 (943)
Q Consensus 260 Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~----~~~~~~~~l~~L~~L~L~~N 335 (943)
+++|.+++..+..+.. ......++.++++++.+.+ .+|..+..+++|++|+|++|
T Consensus 229 L~~n~l~~~~~~~l~~---------------------~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N 287 (353)
T 2z80_A 229 LRDTDLDTFHFSELST---------------------GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN 287 (353)
T ss_dssp EESCBCTTCCCC---------------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS
T ss_pred CCCCcccccccccccc---------------------ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC
Confidence 7777776543332221 1123445555666655543 35667777888888888888
Q ss_pred ccCCcCcccccCCCcCcEEEeeCCcccCcc
Q 002278 336 NLEGPIPHNISSCTALNQFNVHGNRLSGAI 365 (943)
Q Consensus 336 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 365 (943)
+++.+.+..|..+++|++|++++|++.+..
T Consensus 288 ~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 288 QLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 888554445678888888888888887543
No 301
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.97 E-value=7.9e-31 Score=288.01 Aligned_cols=289 Identities=22% Similarity=0.300 Sum_probs=170.4
Q ss_pred ccccccCccccCCCCCCCCCCCCCCcceeEecCCCCcEEEEEcCCCCCccccCCCcCCCCCCCEEEeeCCcccccCCCCc
Q 002278 3 IKASFSNLANVLLDWDDVHNSDFCSWRGVFCDNSSLSVVSLNLSSLNLGGEISPSIGDLRNLQSIDFQGNKLTGQIPDEI 82 (943)
Q Consensus 3 ~~~~~~~~~~~~~~w~~~~~~~~c~w~gv~c~~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~ 82 (943)
-++++.|+..+|.+|+.....|+|.|.++.|...... -.-+... +.... .++..+
T Consensus 21 ~~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~-----~~~~~~~-------------------g~~~~-~~~~~l 75 (328)
T 4fcg_A 21 GSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNN-----PQIETRT-------------------GRALK-ATADLL 75 (328)
T ss_dssp --CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTC-----TTSCCSH-------------------HHHHH-HHHHHH
T ss_pred ccccCchHHHHHHHHHHhccCCchhhhhhhccccccc-----ccccccC-------------------Ccchh-hhHHHH
Confidence 3556777778899997433358999999998533210 0000111 11111 112222
Q ss_pred --cCCCCCcEEeccCCCcCCccchhccccccceEEEecCcccccCCCcccCCCCCCcEEEEeccccccccchhccccccc
Q 002278 83 --GNCGSLVHIELSDNSLYGDIPFSISKLKQLEFLNLKNNQLTGPIPSTLTQIPNLKTLDLARNQLTGEIPRLIYWNEVL 160 (943)
Q Consensus 83 --~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 160 (943)
...++++.|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..|..+++|++|+|++|+++ .+|..+..+++|
T Consensus 76 ~~~~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L 152 (328)
T 4fcg_A 76 EDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRL 152 (328)
T ss_dssp HHHTSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTC
T ss_pred hcccccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCC
Confidence 23588999999999999 88989999999999999999999 88999999999999999999998 566666666666
Q ss_pred eeccccCCccCCCCCcccccccccceeeccceecccccCCCCcCCCcccEEEeecccccCcCCCCCCcceEeEEEecCcc
Q 002278 161 QYLGLRGNALTGMLSPDMCQLTGLWYFDVRGNNLTGTIPDSIGNCTSFEILDISYNQITGEIPYNIGFLQVATLSLQGNK 240 (943)
Q Consensus 161 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~L~~L~L~~n~ 240 (943)
++|+|++|.+.+..|..+... ..+..|.++++|++|+|++|+++
T Consensus 153 ~~L~L~~n~~~~~~p~~~~~~---------------~~~~~~~~l~~L~~L~L~~n~l~--------------------- 196 (328)
T 4fcg_A 153 RELSIRACPELTELPEPLAST---------------DASGEHQGLVNLQSLRLEWTGIR--------------------- 196 (328)
T ss_dssp CEEEEEEETTCCCCCSCSEEE---------------C-CCCEEESTTCCEEEEEEECCC---------------------
T ss_pred CEEECCCCCCccccChhHhhc---------------cchhhhccCCCCCEEECcCCCcC---------------------
Confidence 655555555444433322210 11122344555555555555554
Q ss_pred ccccCCccccccCCCcEEecCCCCCCCCCCcccCCCCCcceEEecCCCCCCCCCCCcCCCCcCcEEEcccCccccccccc
Q 002278 241 LTGKIPEVIGLMQALAVLDLSENELVGPIPPILGNLSYTGKLYLHGNKLTGPIPPELGNMSKLSYLQLQNNQLVGTIPAE 320 (943)
Q Consensus 241 l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 320 (943)
.+|..+..+++|++|+|++|.+.+ +|..+..+++|++|+|++|++.+.+|..|..+++|++|+|++|.+.+.+|..
T Consensus 197 ---~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~ 272 (328)
T 4fcg_A 197 ---SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD 272 (328)
T ss_dssp ---CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTT
T ss_pred ---cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchh
Confidence 234445555556666666665553 3334555555555555555555555555555555555555555444444444
Q ss_pred cCCcccceEEEccccccCCcCcccccCCCcCcEEEeeCC
Q 002278 321 LGKLEQLFELNLADNNLEGPIPHNISSCTALNQFNVHGN 359 (943)
Q Consensus 321 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 359 (943)
+..+++|+.|+|++|++.+.+|..+..+++|+.+++..|
T Consensus 273 ~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 273 IHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp GGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred hhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence 444444444444444444444444444444444444433
No 302
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.97 E-value=1.6e-33 Score=337.26 Aligned_cols=452 Identities=15% Similarity=0.071 Sum_probs=302.9
Q ss_pred CCCCcceeEecCCCCcEEEEEcCCCCCccccCCCcCCCCCCCEEEeeCCcc---cccCCCCcc------------CCCCC
Q 002278 24 DFCSWRGVFCDNSSLSVVSLNLSSLNLGGEISPSIGDLRNLQSIDFQGNKL---TGQIPDEIG------------NCGSL 88 (943)
Q Consensus 24 ~~c~w~gv~c~~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l---~~~~p~~~~------------~l~~L 88 (943)
-|++|.++.+... ..+.+.. .+....+..+..+++|++|+|+++.. .+.+|..++ .+++|
T Consensus 40 vck~W~~~~~~~~----~~l~~~~-~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L 114 (592)
T 3ogk_B 40 VCRRWFKIDSETR----EHVTMAL-CYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQL 114 (592)
T ss_dssp SCHHHHHHHHHHC----CEEEESC-GGGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTC
T ss_pred HhHHHHHhhhccc----cEEEEee-ccccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCC
Confidence 4668999854322 1233332 22323344567889999999998632 134554444 78999
Q ss_pred cEEeccCCCcCCccchhcccc--ccceEEEecCcc-ccc-CCCcccCCCCCCcEEEEeccccccc----cchhccccccc
Q 002278 89 VHIELSDNSLYGDIPFSISKL--KQLEFLNLKNNQ-LTG-PIPSTLTQIPNLKTLDLARNQLTGE----IPRLIYWNEVL 160 (943)
Q Consensus 89 ~~L~Ls~N~l~~~~p~~~~~l--~~L~~L~Ls~n~-l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L 160 (943)
++|+|++|.+++..+..++.+ ++|++|+|++|. ++. .++.....+++|++|+|++|.+++. ++..+..+++|
T Consensus 115 ~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L 194 (592)
T 3ogk_B 115 KSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSL 194 (592)
T ss_dssp CEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCC
T ss_pred CeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCc
Confidence 999999999987777777774 459999999987 321 1223345789999999999998765 44556678899
Q ss_pred eeccccCCccCCCCCcc----cccccccceeeccceecccccCCCCcCCCcccEEEeecccccCcCCCCCCcceEeEEEe
Q 002278 161 QYLGLRGNALTGMLSPD----MCQLTGLWYFDVRGNNLTGTIPDSIGNCTSFEILDISYNQITGEIPYNIGFLQVATLSL 236 (943)
Q Consensus 161 ~~L~L~~n~l~~~~~~~----~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~L~~L~L 236 (943)
++|++++|.++++.... +..+++|+.|++++|.+.+ ++..+.++++|++|+++.+... .+.
T Consensus 195 ~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~--~~~------------ 259 (592)
T 3ogk_B 195 EVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNED--IGM------------ 259 (592)
T ss_dssp CEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCC--TTC------------
T ss_pred cEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccc--cch------------
Confidence 99999999998554333 4567899999999998885 5677888999999999864322 110
Q ss_pred cCccccccCCccccccCCCcEEecCCCCCCCCCCcccCCCCCcceEEecCCCCCCCCC-CCcCCCCcCcEEEcccCcccc
Q 002278 237 QGNKLTGKIPEVIGLMQALAVLDLSENELVGPIPPILGNLSYTGKLYLHGNKLTGPIP-PELGNMSKLSYLQLQNNQLVG 315 (943)
Q Consensus 237 ~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~ 315 (943)
...+..+..+++|+.|+++++... .+|..+..+++|++|+|++|.+++... ..+..+++|++|+++++...+
T Consensus 260 ------~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~ 332 (592)
T 3ogk_B 260 ------PEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDR 332 (592)
T ss_dssp ------TTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHH
T ss_pred ------HHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHH
Confidence 112334555667777777765433 456667777777777777777653322 234667788888888333333
Q ss_pred ccccccCCcccceEEEcc-----------ccccCCcC-cccccCCCcCcEEEeeCCcccCcccccccc-cCccceeecc-
Q 002278 316 TIPAELGKLEQLFELNLA-----------DNNLEGPI-PHNISSCTALNQFNVHGNRLSGAIPSSFRN-LGSLTYLNLS- 381 (943)
Q Consensus 316 ~~~~~~~~l~~L~~L~L~-----------~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~L~- 381 (943)
.++..+..+++|++|+|+ .|.++... +..+..+++|++|+++.|.+++..+..+.. +++|+.|+++
T Consensus 333 ~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~ 412 (592)
T 3ogk_B 333 GLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVL 412 (592)
T ss_dssp HHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEE
T ss_pred HHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEee
Confidence 334444567778888888 35555332 222455788888888888887666666654 7888888885
Q ss_pred ---CCcCCCC-----CCCCCCCCCCccEEecCCCc--CCCccCCCcc-cccccceeecccccccc-cCCccccCCCccce
Q 002278 382 ---RNNFKGK-----VPTELGRIINLDTLDLSVNN--FSGSVPASIG-DLEHLLTLNLSRNHLNG-LLPAEFGNLRSIQT 449 (943)
Q Consensus 382 ---~N~l~~~-----~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~-~l~~L~~L~Ls~N~l~~-~~p~~~~~l~~L~~ 449 (943)
.|.+++. ++..+..+++|+.|++++|. +++..+..+. .+++|++|+|++|++++ .++..+.++++|++
T Consensus 413 ~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~ 492 (592)
T 3ogk_B 413 LDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQK 492 (592)
T ss_dssp CSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCE
T ss_pred cCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCe
Confidence 6666643 22225567788888887543 5544444443 37788889998888875 33455677888999
Q ss_pred ecccCcccccc-CChhhhcccccceecccCcccCCCCCCcCc-cccCCcccccCC
Q 002278 450 IDMSFNQLSGS-IPAELGQLQNIISLILNNNNLQGGIPDQLS-NCFSLSNLNVSY 502 (943)
Q Consensus 450 L~Ls~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~ls~ 502 (943)
|+|++|++++. ++..+..+++|+.|+|++|+++..--..+. .++.+....+..
T Consensus 493 L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 493 LEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPS 547 (592)
T ss_dssp EEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECC
T ss_pred eeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecC
Confidence 99999988754 344556788899999999988754333332 455554444443
No 303
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.97 E-value=2.3e-30 Score=282.32 Aligned_cols=250 Identities=20% Similarity=0.269 Sum_probs=165.5
Q ss_pred CCcceeEecCCCCcEEEEEcCCCCCccccCCCcCCCCCCCEEEeeCCcccccCCCCccCCCCCcEEeccCCCcCCc--cc
Q 002278 26 CSWRGVFCDNSSLSVVSLNLSSLNLGGEISPSIGDLRNLQSIDFQGNKLTGQIPDEIGNCGSLVHIELSDNSLYGD--IP 103 (943)
Q Consensus 26 c~w~gv~c~~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~--~p 103 (943)
|.|.+|.|++. +++ .+|..+. ++|++|+|++|+|+...+..|.++++|++|+|++|+++.. .|
T Consensus 7 C~~~~l~c~~~------------~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 71 (306)
T 2z66_A 7 CSGTEIRCNSK------------GLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCS 71 (306)
T ss_dssp EETTEEECCSS------------CCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEE
T ss_pred eCCCEEEcCCC------------Ccc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcc
Confidence 78988888654 344 5666553 6899999999999954445589999999999999999833 36
Q ss_pred hhccccccceEEEecCcccccCCCcccCCCCCCcEEEEeccccccccc-hhccccccceeccccCCccCCCCCccccccc
Q 002278 104 FSISKLKQLEFLNLKNNQLTGPIPSTLTQIPNLKTLDLARNQLTGEIP-RLIYWNEVLQYLGLRGNALTGMLSPDMCQLT 182 (943)
Q Consensus 104 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 182 (943)
..+..+++|++|+|++|.++ .+|..+..+++|++|+|++|++++..+ ..+..+++|++|++++|.+.++.+..+..++
T Consensus 72 ~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 150 (306)
T 2z66_A 72 QSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 150 (306)
T ss_dssp HHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCT
T ss_pred cccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCc
Confidence 77888999999999999998 567778889999999999998885544 4566666666666666666665555555566
Q ss_pred ccceeeccceeccc-ccCCCCcCCCcccEEEeecccccCcCCCCCCcceEeEEEecCccccccCCccccccCCCcEEecC
Q 002278 183 GLWYFDVRGNNLTG-TIPDSIGNCTSFEILDISYNQITGEIPYNIGFLQVATLSLQGNKLTGKIPEVIGLMQALAVLDLS 261 (943)
Q Consensus 183 ~L~~L~L~~N~i~~-~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls 261 (943)
+|++|++++|.+++ ..|..+..+++|++|++++|++++ ..|..+..+++|+.|+|+
T Consensus 151 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~-----------------------~~~~~~~~l~~L~~L~L~ 207 (306)
T 2z66_A 151 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ-----------------------LSPTAFNSLSSLQVLNMS 207 (306)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE-----------------------ECTTTTTTCTTCCEEECT
T ss_pred CCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCC-----------------------cCHHHhcCCCCCCEEECC
Confidence 66666666665554 345555555555555555555442 233444455555555555
Q ss_pred CCCCCCCCCcccCCCCCcceEEecCCCCCCCCCCCcCCCC-cCcEEEcccCccc
Q 002278 262 ENELVGPIPPILGNLSYTGKLYLHGNKLTGPIPPELGNMS-KLSYLQLQNNQLV 314 (943)
Q Consensus 262 ~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~ 314 (943)
+|.+++..+..|..+++|+.|+|++|++++..|..+..++ +|++|++++|.+.
T Consensus 208 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 208 HNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp TSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred CCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 5555544444455555555555555555555555555542 5555555555554
No 304
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=1.6e-30 Score=289.51 Aligned_cols=259 Identities=19% Similarity=0.169 Sum_probs=194.4
Q ss_pred CCCcEEecCCCCCCCCCCcccCCCCCcceEEecCCCCCCCCCCCcCCCCcCcEEEcccCccccccccccCCcccceEEEc
Q 002278 253 QALAVLDLSENELVGPIPPILGNLSYTGKLYLHGNKLTGPIPPELGNMSKLSYLQLQNNQLVGTIPAELGKLEQLFELNL 332 (943)
Q Consensus 253 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 332 (943)
++|++|++++|.+++..+..|.++++|+.|+|++|++++..|..|.++++|++|++++|++++..+..|.++++|++|+|
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 131 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEEC
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEEC
Confidence 36777777777777655566777777777777777777666677777777888888888877655555777788888888
Q ss_pred cccccCCcCc-ccccCCCcCcEEEeeCC-cccCcccccccccCccceeeccCCcCCCCCCCCCCCCCCccEEecCCCcCC
Q 002278 333 ADNNLEGPIP-HNISSCTALNQFNVHGN-RLSGAIPSSFRNLGSLTYLNLSRNNFKGKVPTELGRIINLDTLDLSVNNFS 410 (943)
Q Consensus 333 ~~N~l~~~~p-~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 410 (943)
++|++++..+ ..|..+++|++|++++| .+.+..+..|.++++|++|++++|++++..|..+..+++|++|++++|.+.
T Consensus 132 ~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 211 (353)
T 2z80_A 132 LGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211 (353)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST
T ss_pred CCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc
Confidence 8888875544 46777888888888887 466666777888888888888888888777888888888888888888887
Q ss_pred CccCCCcccccccceeecccccccccCCcccc---CCCccceecccCccccc----cCChhhhcccccceecccCcccCC
Q 002278 411 GSVPASIGDLEHLLTLNLSRNHLNGLLPAEFG---NLRSIQTIDMSFNQLSG----SIPAELGQLQNIISLILNNNNLQG 483 (943)
Q Consensus 411 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~---~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~ 483 (943)
...+..+..+++|+.|+|++|++++..+..+. ....++.++|++|.+++ .+|..+..+++|+.|+|++|+++.
T Consensus 212 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~ 291 (353)
T 2z80_A 212 LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS 291 (353)
T ss_dssp THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC
T ss_pred cchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc
Confidence 44333445678888888888888876555443 34567777777777765 478888999999999999999994
Q ss_pred CCCCcCccccCCcccccCCccccccCCC
Q 002278 484 GIPDQLSNCFSLSNLNVSYNNLSGIIPP 511 (943)
Q Consensus 484 ~~p~~~~~l~~L~~L~ls~N~l~~~~~~ 511 (943)
..+..+..+++|++|++++|++++..|.
T Consensus 292 i~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 292 VPDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred cCHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 4443458899999999999999887664
No 305
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=5.6e-30 Score=279.19 Aligned_cols=250 Identities=22% Similarity=0.273 Sum_probs=178.2
Q ss_pred cEEecCCCCCCCCCCcccCCCCCcceEEecCCCCCCCCCCCcCCCCcCcEEEcccCccccc--cccccCCcccceEEEcc
Q 002278 256 AVLDLSENELVGPIPPILGNLSYTGKLYLHGNKLTGPIPPELGNMSKLSYLQLQNNQLVGT--IPAELGKLEQLFELNLA 333 (943)
Q Consensus 256 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~L~ 333 (943)
+.++++++.++. +|..+. ++|++|+|++|+++...+..|.++++|++|++++|+++.. .+..+..+++|++|+|+
T Consensus 10 ~~l~c~~~~l~~-ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLTS-VPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCSS-CCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCccc-CCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 355666666553 333222 4566666666666654444566677777777777776622 24555566777777777
Q ss_pred ccccCCcCcccccCCCcCcEEEeeCCcccCccc-ccccccCccceeeccCCcCCCCCCCCCCCCCCccEEecCCCcCCC-
Q 002278 334 DNNLEGPIPHNISSCTALNQFNVHGNRLSGAIP-SSFRNLGSLTYLNLSRNNFKGKVPTELGRIINLDTLDLSVNNFSG- 411 (943)
Q Consensus 334 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~- 411 (943)
+|.+. .+|..+..+++|++|++++|++++..+ ..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+
T Consensus 87 ~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 87 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp SCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence 77776 355557777777777777777775544 567777777777777777777777777777788888888887765
Q ss_pred ccCCCcccccccceeecccccccccCCccccCCCccceecccCccccccCChhhhcccccceecccCcccCCCCCCcCcc
Q 002278 412 SVPASIGDLEHLLTLNLSRNHLNGLLPAEFGNLRSIQTIDMSFNQLSGSIPAELGQLQNIISLILNNNNLQGGIPDQLSN 491 (943)
Q Consensus 412 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 491 (943)
..|..+..+++|++|+|++|++++..|..|..+++|++|+|++|++++..+..+..+++|+.|+|++|++++..|..+..
T Consensus 166 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 245 (306)
T 2z66_A 166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 245 (306)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCC
T ss_pred cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHh
Confidence 46777778888888888888888777777888888888888888887666667778888888888888888777777777
Q ss_pred cc-CCcccccCCccccccC
Q 002278 492 CF-SLSNLNVSYNNLSGII 509 (943)
Q Consensus 492 l~-~L~~L~ls~N~l~~~~ 509 (943)
++ +|+.|+|++|++++..
T Consensus 246 ~~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 246 FPSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp CCTTCCEEECTTCCEECSG
T ss_pred hhccCCEEEccCCCeeccc
Confidence 74 7888888888887643
No 306
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=4.8e-29 Score=286.25 Aligned_cols=248 Identities=22% Similarity=0.267 Sum_probs=154.3
Q ss_pred CCcEEecCCCCCCCCCCcccCCCCCcceEEecCCCCCCCCCCCcCCCCcCcEEEcccCccccccccccCCcccceEEEcc
Q 002278 254 ALAVLDLSENELVGPIPPILGNLSYTGKLYLHGNKLTGPIPPELGNMSKLSYLQLQNNQLVGTIPAELGKLEQLFELNLA 333 (943)
Q Consensus 254 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 333 (943)
....++++++.++ .+|..+. ++++.|+|++|++++..+..|.++++|++|+|++|.+++..+..|.++++|++|+|+
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 3455666666665 3343332 456666666666666666666666666666666666666656666666666666666
Q ss_pred ccccCCcCcccccCCCcCcEEEeeCCcccCcccccccccCccceeeccC-CcCCCCCCCCCCCCCCccEEecCCCcCCCc
Q 002278 334 DNNLEGPIPHNISSCTALNQFNVHGNRLSGAIPSSFRNLGSLTYLNLSR-NNFKGKVPTELGRIINLDTLDLSVNNFSGS 412 (943)
Q Consensus 334 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 412 (943)
+|+|+.+.+..|..+++|++|+|++|+|+...+..|..+++|+.|+|++ |.+....+..|..+++|+.|+|++|.++ .
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~ 199 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E 199 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-S
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-c
Confidence 6666655555666666666666666666655555666666666666666 3333333445666666666666666666 3
Q ss_pred cCCCcccccccceeecccccccccCCccccCCCccceecccCccccccCChhhhcccccceecccCcccCCCCCCcCccc
Q 002278 413 VPASIGDLEHLLTLNLSRNHLNGLLPAEFGNLRSIQTIDMSFNQLSGSIPAELGQLQNIISLILNNNNLQGGIPDQLSNC 492 (943)
Q Consensus 413 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l 492 (943)
+| .+..+++|+.|+|++|++++..|..|.++++|+.|+|++|+|++..|..|..+++|+.|+|++|+|++..+..+..+
T Consensus 200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 278 (440)
T 3zyj_A 200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278 (440)
T ss_dssp CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence 33 35566666666666666666666666666666666666666666556666666666666666666665555555666
Q ss_pred cCCcccccCCcccc
Q 002278 493 FSLSNLNVSYNNLS 506 (943)
Q Consensus 493 ~~L~~L~ls~N~l~ 506 (943)
++|+.|+|++|++.
T Consensus 279 ~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 279 HHLERIHLHHNPWN 292 (440)
T ss_dssp TTCCEEECCSSCEE
T ss_pred cCCCEEEcCCCCcc
Confidence 66666665555543
No 307
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=5.4e-29 Score=286.89 Aligned_cols=247 Identities=22% Similarity=0.242 Sum_probs=155.6
Q ss_pred CcEEecCCCCCCCCCCcccCCCCCcceEEecCCCCCCCCCCCcCCCCcCcEEEcccCccccccccccCCcccceEEEccc
Q 002278 255 LAVLDLSENELVGPIPPILGNLSYTGKLYLHGNKLTGPIPPELGNMSKLSYLQLQNNQLVGTIPAELGKLEQLFELNLAD 334 (943)
Q Consensus 255 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 334 (943)
...++++++.++. +|..+. ++++.|+|++|+|++..+..|.++++|++|+|++|+|++..+..|.++++|++|+|++
T Consensus 56 ~~~v~c~~~~l~~-iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLSE-VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcCc-cCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 4455666655553 333332 4556666666666665566666666666666666666665556666666666666666
Q ss_pred cccCCcCcccccCCCcCcEEEeeCCcccCcccccccccCccceeeccC-CcCCCCCCCCCCCCCCccEEecCCCcCCCcc
Q 002278 335 NNLEGPIPHNISSCTALNQFNVHGNRLSGAIPSSFRNLGSLTYLNLSR-NNFKGKVPTELGRIINLDTLDLSVNNFSGSV 413 (943)
Q Consensus 335 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 413 (943)
|+|++..+..|..+++|++|+|++|+|+++.+..|..+++|+.|+|++ |.+....+..|..+++|+.|+|++|++++ +
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~ 211 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-M 211 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-C
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-c
Confidence 666655555666666666666666666655555666666666666666 34443334456666666666666666663 3
Q ss_pred CCCcccccccceeecccccccccCCccccCCCccceecccCccccccCChhhhcccccceecccCcccCCCCCCcCcccc
Q 002278 414 PASIGDLEHLLTLNLSRNHLNGLLPAEFGNLRSIQTIDMSFNQLSGSIPAELGQLQNIISLILNNNNLQGGIPDQLSNCF 493 (943)
Q Consensus 414 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 493 (943)
| .+..+++|+.|+|++|++++..|..|.++++|+.|+|++|++++..|..|..+++|+.|+|++|+|++..+..+..++
T Consensus 212 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 290 (452)
T 3zyi_A 212 P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR 290 (452)
T ss_dssp C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCT
T ss_pred c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcccc
Confidence 3 356666677777777777666666666677777777777777666666666667777777777777665555666666
Q ss_pred CCcccccCCcccc
Q 002278 494 SLSNLNVSYNNLS 506 (943)
Q Consensus 494 ~L~~L~ls~N~l~ 506 (943)
+|+.|+|++|++.
T Consensus 291 ~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 291 YLVELHLHHNPWN 303 (452)
T ss_dssp TCCEEECCSSCEE
T ss_pred CCCEEEccCCCcC
Confidence 6666666666554
No 308
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.96 E-value=9.4e-30 Score=300.33 Aligned_cols=292 Identities=26% Similarity=0.322 Sum_probs=161.9
Q ss_pred ccCCCCCCCCCCCCCCcceeEecC------CCCcEEEEEcCCCCCccccCCCcCCCCCCCEEEeeCCcccccCCCCccCC
Q 002278 12 NVLLDWDDVHNSDFCSWRGVFCDN------SSLSVVSLNLSSLNLGGEISPSIGDLRNLQSIDFQGNKLTGQIPDEIGNC 85 (943)
Q Consensus 12 ~~~~~w~~~~~~~~c~w~gv~c~~------~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l 85 (943)
...++|.. +.+||.|+|..|.- ....++.|++++|+++ .+|..+. ++|++|+|++|+|+ .+|. .+
T Consensus 10 ~~w~~W~~--~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l 80 (622)
T 3g06_A 10 AVWSAWRR--AAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LP 80 (622)
T ss_dssp CHHHHHHH--TCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CC
T ss_pred HHHHHHHh--cCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cC
Confidence 35566754 46899997743210 1123567788888877 6776665 67788888888777 4554 46
Q ss_pred CCCcEEeccCCCcCCccchhccccccceEEEecCcccccCCCcccCCCCCCcEEEEeccccccccchhccccccceeccc
Q 002278 86 GSLVHIELSDNSLYGDIPFSISKLKQLEFLNLKNNQLTGPIPSTLTQIPNLKTLDLARNQLTGEIPRLIYWNEVLQYLGL 165 (943)
Q Consensus 86 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 165 (943)
++|++|+|++|+|+ .+|. .+++|++|+|++|++++ +|. .+++|+.|+|++|+|+. +|.. +++|++|+|
T Consensus 81 ~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~L 148 (622)
T 3g06_A 81 PELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSV 148 (622)
T ss_dssp TTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEEC
T ss_pred CCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEEC
Confidence 77777777777777 4554 56777777777777774 333 45667777777777663 3332 255555555
Q ss_pred cCCccCCCCCcccccccccceeeccceecccccCCCCcCCCcccEEEeecccccCcCCCCCCcceEeEEEecCccccccC
Q 002278 166 RGNALTGMLSPDMCQLTGLWYFDVRGNNLTGTIPDSIGNCTSFEILDISYNQITGEIPYNIGFLQVATLSLQGNKLTGKI 245 (943)
Q Consensus 166 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~ 245 (943)
++|++++++. .+.+|+.|++++|+|++ +| ..+++|+.|++++|+|+ + +
T Consensus 149 s~N~l~~l~~----~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~-----------------------~-l 196 (622)
T 3g06_A 149 SDNQLASLPA----LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLA-----------------------S-L 196 (622)
T ss_dssp CSSCCSCCCC----CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-----------------------C-C
T ss_pred cCCcCCCcCC----ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCC-----------------------C-C
Confidence 5555554422 23344445555555442 22 22344444444444444 1 1
Q ss_pred CccccccCCCcEEecCCCCCCCCCCcccCCCCCcceEEecCCCCCCCCCCCcCCCCcCcEEEcccCccccccccccCCcc
Q 002278 246 PEVIGLMQALAVLDLSENELVGPIPPILGNLSYTGKLYLHGNKLTGPIPPELGNMSKLSYLQLQNNQLVGTIPAELGKLE 325 (943)
Q Consensus 246 ~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 325 (943)
|. .+++|+.|++++|.++. +|.. +++|+.|+|++|+|++ +| ..+++|++|+|++|+|+ .+|. .++
T Consensus 197 ~~---~~~~L~~L~L~~N~l~~-l~~~---~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~ 261 (622)
T 3g06_A 197 PT---LPSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPS 261 (622)
T ss_dssp CC---CCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCT
T ss_pred CC---ccchhhEEECcCCcccc-cCCC---CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccc
Confidence 11 12455555555555552 2221 2445555555555553 23 23355556666666555 2333 344
Q ss_pred cceEEEccccccCCcCcccccCCCcCcEEEeeCCcccCccccccccc
Q 002278 326 QLFELNLADNNLEGPIPHNISSCTALNQFNVHGNRLSGAIPSSFRNL 372 (943)
Q Consensus 326 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 372 (943)
+|+.|+|++|+|+ .+|..+.++++|+.|+|++|++++..|..+..+
T Consensus 262 ~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 262 GLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp TCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred cCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 5555555555555 345555555555555555555555555444443
No 309
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=5.1e-29 Score=286.02 Aligned_cols=252 Identities=23% Similarity=0.265 Sum_probs=228.3
Q ss_pred CcceEEecCCCCCCCCCCCcCCCCcCcEEEcccCccccccccccCCcccceEEEccccccCCcCcccccCCCcCcEEEee
Q 002278 278 YTGKLYLHGNKLTGPIPPELGNMSKLSYLQLQNNQLVGTIPAELGKLEQLFELNLADNNLEGPIPHNISSCTALNQFNVH 357 (943)
Q Consensus 278 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 357 (943)
....++..++.++ .+|..+. ++++.|+|++|++++..+..|.++++|++|+|++|+|+++.+..|.++++|++|+|+
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 3567899999998 5666654 789999999999998888999999999999999999999989999999999999999
Q ss_pred CCcccCcccccccccCccceeeccCCcCCCCCCCCCCCCCCccEEecCCC-cCCCccCCCcccccccceeeccccccccc
Q 002278 358 GNRLSGAIPSSFRNLGSLTYLNLSRNNFKGKVPTELGRIINLDTLDLSVN-NFSGSVPASIGDLEHLLTLNLSRNHLNGL 436 (943)
Q Consensus 358 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 436 (943)
+|+|+++.+..|..+++|++|+|++|+++...+..|..+++|+.|+|++| .+....+..|.++++|+.|+|++|+++.
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~- 199 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE- 199 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-
Confidence 99999888889999999999999999999888889999999999999995 4554445579999999999999999995
Q ss_pred CCccccCCCccceecccCccccccCChhhhcccccceecccCcccCCCCCCcCccccCCcccccCCccccccCCCC-ccc
Q 002278 437 LPAEFGNLRSIQTIDMSFNQLSGSIPAELGQLQNIISLILNNNNLQGGIPDQLSNCFSLSNLNVSYNNLSGIIPPI-RNF 515 (943)
Q Consensus 437 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~-~~~ 515 (943)
+| .+..+++|++|+|++|+|++..|..|..+++|+.|+|++|++++..|..|.++++|+.|+|++|+|+++++.. ..+
T Consensus 200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 278 (440)
T 3zyj_A 200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278 (440)
T ss_dssp CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence 45 5899999999999999999888999999999999999999999999999999999999999999999988764 557
Q ss_pred CcCCCCccccCCCCCCCCC
Q 002278 516 SRFSSNSFIGNPLLCGNWI 534 (943)
Q Consensus 516 ~~~~~~~~~~Np~~c~~~~ 534 (943)
..+..+.+.+|||.|+|.+
T Consensus 279 ~~L~~L~L~~Np~~CdC~l 297 (440)
T 3zyj_A 279 HHLERIHLHHNPWNCNCDI 297 (440)
T ss_dssp TTCCEEECCSSCEECSSTT
T ss_pred cCCCEEEcCCCCccCCCCc
Confidence 7888889999999999743
No 310
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=5.3e-29 Score=286.97 Aligned_cols=251 Identities=22% Similarity=0.253 Sum_probs=227.7
Q ss_pred cceEEecCCCCCCCCCCCcCCCCcCcEEEcccCccccccccccCCcccceEEEccccccCCcCcccccCCCcCcEEEeeC
Q 002278 279 TGKLYLHGNKLTGPIPPELGNMSKLSYLQLQNNQLVGTIPAELGKLEQLFELNLADNNLEGPIPHNISSCTALNQFNVHG 358 (943)
Q Consensus 279 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 358 (943)
...++.+++.++ .+|..+. ++|++|+|++|+|++..+..|.++++|++|+|++|+|+++.+..|.++++|++|+|++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 467899999998 4666554 6899999999999998899999999999999999999999999999999999999999
Q ss_pred CcccCcccccccccCccceeeccCCcCCCCCCCCCCCCCCccEEecCCC-cCCCccCCCcccccccceeecccccccccC
Q 002278 359 NRLSGAIPSSFRNLGSLTYLNLSRNNFKGKVPTELGRIINLDTLDLSVN-NFSGSVPASIGDLEHLLTLNLSRNHLNGLL 437 (943)
Q Consensus 359 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 437 (943)
|+|++..+..|..+++|++|+|++|+++...+..|..+++|+.|++++| .+....+..|.++++|+.|+|++|++++.
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~- 211 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM- 211 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-
Confidence 9999888888999999999999999999877889999999999999994 55544445799999999999999999964
Q ss_pred CccccCCCccceecccCccccccCChhhhcccccceecccCcccCCCCCCcCccccCCcccccCCccccccCCCC-cccC
Q 002278 438 PAEFGNLRSIQTIDMSFNQLSGSIPAELGQLQNIISLILNNNNLQGGIPDQLSNCFSLSNLNVSYNNLSGIIPPI-RNFS 516 (943)
Q Consensus 438 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~-~~~~ 516 (943)
| .+..+++|++|+|++|+|++..|..|..+++|+.|+|++|++++..|..|..+++|+.|+|++|+|+++++.. ..+.
T Consensus 212 ~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 290 (452)
T 3zyi_A 212 P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLR 290 (452)
T ss_dssp C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCT
T ss_pred c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhcccc
Confidence 4 5889999999999999999988999999999999999999999999999999999999999999999988764 5577
Q ss_pred cCCCCccccCCCCCCCCC
Q 002278 517 RFSSNSFIGNPLLCGNWI 534 (943)
Q Consensus 517 ~~~~~~~~~Np~~c~~~~ 534 (943)
.+..+.+.+|||.|+|.+
T Consensus 291 ~L~~L~L~~Np~~CdC~~ 308 (452)
T 3zyi_A 291 YLVELHLHHNPWNCDCDI 308 (452)
T ss_dssp TCCEEECCSSCEECSTTT
T ss_pred CCCEEEccCCCcCCCCCc
Confidence 788889999999999743
No 311
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=7.1e-29 Score=267.43 Aligned_cols=236 Identities=24% Similarity=0.261 Sum_probs=123.9
Q ss_pred CCCcEEecCCCCCCCCCCcccCCCCCcceEEecCCCCCCCCCCCcCCCCcCcEEEcccCc-cccccccccCCcccceEEE
Q 002278 253 QALAVLDLSENELVGPIPPILGNLSYTGKLYLHGNKLTGPIPPELGNMSKLSYLQLQNNQ-LVGTIPAELGKLEQLFELN 331 (943)
Q Consensus 253 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~ 331 (943)
++|+.|++++|.+++..+..|..+++|++|+|++|.+++..|..|..+++|++|++++|. +....|..|..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 355555555555554444455555555555555555554445555555555555555554 4444455555555555555
Q ss_pred ccccccCCcCcccccCCCcCcEEEeeCCcccCcccccccccCccceeeccCCcCCCCCCCCCCCCCCccEEecCCCcCCC
Q 002278 332 LADNNLEGPIPHNISSCTALNQFNVHGNRLSGAIPSSFRNLGSLTYLNLSRNNFKGKVPTELGRIINLDTLDLSVNNFSG 411 (943)
Q Consensus 332 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 411 (943)
+++|++++..|..|..+++|++|++++|++++..+..|..+++|++|+|++|++++..+..+..+++|+.|++++|.+++
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence 55555555555555555555555555555554444445555555555555555554444445555555555555555555
Q ss_pred ccCCCcccccccceeecccccccccCCccccCCCccceecccCccccccCChhhhcccccceecccCcccCCCCCCcC
Q 002278 412 SVPASIGDLEHLLTLNLSRNHLNGLLPAEFGNLRSIQTIDMSFNQLSGSIPAELGQLQNIISLILNNNNLQGGIPDQL 489 (943)
Q Consensus 412 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~ 489 (943)
..|..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|++....+. ..-...++.+..+.|.+....|..+
T Consensus 192 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~-~~~~~~l~~~~~~~~~~~c~~p~~l 268 (285)
T 1ozn_A 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRL 268 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG-HHHHHHHHHCCSEECCCBEEESGGG
T ss_pred cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc-HHHHHHHHhcccccCccccCCchHh
Confidence 4455555555555555555555554444455555555555555555532221 1222334444444555544444443
No 312
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=1.6e-30 Score=301.27 Aligned_cols=235 Identities=23% Similarity=0.197 Sum_probs=136.8
Q ss_pred CCCcEEecCCCCCCCCCCcccCCCCCcceEEecCCCCCCCCCCCcCCCCcCcEEEcccCccccccccccCCcccceEEEc
Q 002278 253 QALAVLDLSENELVGPIPPILGNLSYTGKLYLHGNKLTGPIPPELGNMSKLSYLQLQNNQLVGTIPAELGKLEQLFELNL 332 (943)
Q Consensus 253 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 332 (943)
++|+.|+|++|.+.+..|..|..+++|+.|+|++|.+++..| |..+++|++|+|++|.+++..+ .++|+.|++
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L 106 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHA 106 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEEC
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEEC
Confidence 367777777777776666677777777777777777765444 6667777777777777664322 256666666
Q ss_pred cccccCCcCcccccCCCcCcEEEeeCCcccCcccccccccCccceeeccCCcCCCCCCCCCC-CCCCccEEecCCCcCCC
Q 002278 333 ADNNLEGPIPHNISSCTALNQFNVHGNRLSGAIPSSFRNLGSLTYLNLSRNNFKGKVPTELG-RIINLDTLDLSVNNFSG 411 (943)
Q Consensus 333 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~ 411 (943)
++|.|++..+.. +++|+.|+|++|.|++..|..|..+++|+.|+|++|.+++..|..+. .+++|+.|+|++|.|++
T Consensus 107 ~~N~l~~~~~~~---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 107 ANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CSSCCCCEEECC---CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred cCCcCCCCCccc---cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 666666554432 35566666666666665565666666666666666666655555443 45556666666666553
Q ss_pred ccCCCcccccccceeecccccccccCCccccCCCccceecccCccccccCChhhhcccccceecccCcccC-CCCCCcCc
Q 002278 412 SVPASIGDLEHLLTLNLSRNHLNGLLPAEFGNLRSIQTIDMSFNQLSGSIPAELGQLQNIISLILNNNNLQ-GGIPDQLS 490 (943)
Q Consensus 412 ~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~-~~~p~~~~ 490 (943)
. |. +..+++|+.|+|++|+|++.+ ..|..+++|+.|+|++|+|++ +|..+..+++|+.|++++|++. +.+|..+.
T Consensus 184 ~-~~-~~~l~~L~~L~Ls~N~l~~~~-~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~ 259 (487)
T 3oja_A 184 V-KG-QVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259 (487)
T ss_dssp E-EC-CCCCTTCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHT
T ss_pred c-cc-cccCCCCCEEECCCCCCCCCC-HhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHH
Confidence 3 21 223555555555555555432 235555555555555555552 4555555555555555555555 34444444
Q ss_pred cccCCcccccC
Q 002278 491 NCFSLSNLNVS 501 (943)
Q Consensus 491 ~l~~L~~L~ls 501 (943)
.++.|+.++++
T Consensus 260 ~l~~L~~l~~~ 270 (487)
T 3oja_A 260 KNQRVQTVAKQ 270 (487)
T ss_dssp TCHHHHHHHHH
T ss_pred hCCCCcEEecc
Confidence 45555444443
No 313
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=5.2e-32 Score=324.07 Aligned_cols=327 Identities=12% Similarity=0.039 Sum_probs=230.9
Q ss_pred cccccceeeccceecccc----cCCCCcCCCcccEEEeecccccCc----CCCCC-CcceEeEEEecCccccccCCcccc
Q 002278 180 QLTGLWYFDVRGNNLTGT----IPDSIGNCTSFEILDISYNQITGE----IPYNI-GFLQVATLSLQGNKLTGKIPEVIG 250 (943)
Q Consensus 180 ~l~~L~~L~L~~N~i~~~----~~~~l~~l~~L~~L~Ls~N~l~~~----~~~~~-~~~~L~~L~L~~n~l~~~~~~~l~ 250 (943)
.+++|++|+|++|.+++. ++..+.++++|++|++++|.+++. ++..+ ...+|+.|++++|.+.+ ++..+.
T Consensus 162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~ 240 (592)
T 3ogk_B 162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFK 240 (592)
T ss_dssp HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHH
T ss_pred hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHh
Confidence 345555555555554433 222334455666666666655421 11111 22356666666666654 567888
Q ss_pred ccCCCcEEecCCCCCC---CCCCcccCCCCCcceEEecCCCCCCCCCCCcCCCCcCcEEEcccCccccccc-cccCCccc
Q 002278 251 LMQALAVLDLSENELV---GPIPPILGNLSYTGKLYLHGNKLTGPIPPELGNMSKLSYLQLQNNQLVGTIP-AELGKLEQ 326 (943)
Q Consensus 251 ~l~~L~~L~Ls~N~l~---~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~ 326 (943)
.+++|+.|+++.+... ...+..+..+++|+.|.++++... .+|..+..+++|++|++++|.+++... ..+..+++
T Consensus 241 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~ 319 (592)
T 3ogk_B 241 AAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPN 319 (592)
T ss_dssp HCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTT
T ss_pred hhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcC
Confidence 9999999999864332 234467788899999999986544 677788889999999999999865443 34688999
Q ss_pred ceEEEccccccCCcCcccccCCCcCcEEEee-----------CCcccCc-ccccccccCccceeeccCCcCCCCCCCCCC
Q 002278 327 LFELNLADNNLEGPIPHNISSCTALNQFNVH-----------GNRLSGA-IPSSFRNLGSLTYLNLSRNNFKGKVPTELG 394 (943)
Q Consensus 327 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~-----------~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 394 (943)
|++|+++++-..+.++..+..+++|++|+++ .|.++.. ++..+..+++|++|+++.|.+++..+..+.
T Consensus 320 L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~ 399 (592)
T 3ogk_B 320 LEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIG 399 (592)
T ss_dssp CCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHH
T ss_pred CCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHH
Confidence 9999999443333344455778999999999 3677643 233355689999999999999876655565
Q ss_pred C-CCCccEEecC----CCcCCCc-----cCCCcccccccceeecccc--cccccCCcccc-CCCccceecccCccccc-c
Q 002278 395 R-IINLDTLDLS----VNNFSGS-----VPASIGDLEHLLTLNLSRN--HLNGLLPAEFG-NLRSIQTIDMSFNQLSG-S 460 (943)
Q Consensus 395 ~-l~~L~~L~Ls----~N~l~~~-----~~~~~~~l~~L~~L~Ls~N--~l~~~~p~~~~-~l~~L~~L~Ls~N~l~~-~ 460 (943)
. +++|+.|+++ .|.+++. ++..+.++++|+.|+|++| .+++..+..+. .+++|++|+|++|++++ .
T Consensus 400 ~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 479 (592)
T 3ogk_B 400 TYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEG 479 (592)
T ss_dssp HHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHH
T ss_pred hhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHH
Confidence 5 8899999996 6777753 3334677899999999854 36655544444 48899999999999986 3
Q ss_pred CChhhhcccccceecccCcccCCC-CCCcCccccCCcccccCCcccccc
Q 002278 461 IPAELGQLQNIISLILNNNNLQGG-IPDQLSNCFSLSNLNVSYNNLSGI 508 (943)
Q Consensus 461 ~p~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~ls~N~l~~~ 508 (943)
++..+..+++|+.|+|++|++++. ++..+..+++|+.|+|++|+++..
T Consensus 480 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 480 LMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 456668899999999999998754 344456789999999999998764
No 314
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=1.7e-28 Score=264.37 Aligned_cols=248 Identities=25% Similarity=0.244 Sum_probs=200.1
Q ss_pred eEeEEEecCccccccCCccccccCCCcEEecCCCCCCCCCCcccCCCCCcceEEecCCC-CCCCCCCCcCCCCcCcEEEc
Q 002278 230 QVATLSLQGNKLTGKIPEVIGLMQALAVLDLSENELVGPIPPILGNLSYTGKLYLHGNK-LTGPIPPELGNMSKLSYLQL 308 (943)
Q Consensus 230 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L 308 (943)
+++.|++++|.+++..+..|..+++|++|+|++|.+.+..|..|.++++|++|+|++|. ++...|..|..+++|++|++
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l 112 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence 45555555555555666777888888888888888887778888888888999998887 77776888888899999999
Q ss_pred ccCccccccccccCCcccceEEEccccccCCcCcccccCCCcCcEEEeeCCcccCcccccccccCccceeeccCCcCCCC
Q 002278 309 QNNQLVGTIPAELGKLEQLFELNLADNNLEGPIPHNISSCTALNQFNVHGNRLSGAIPSSFRNLGSLTYLNLSRNNFKGK 388 (943)
Q Consensus 309 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 388 (943)
++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|+.|+|++|++++.
T Consensus 113 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 192 (285)
T 1ozn_A 113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192 (285)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccccc
Confidence 99999887788888899999999999999887777888899999999999999877777888999999999999999988
Q ss_pred CCCCCCCCCCccEEecCCCcCCCccCCCcccccccceeecccccccccCCccccCCCccceecccCccccccCChhhhc-
Q 002278 389 VPTELGRIINLDTLDLSVNNFSGSVPASIGDLEHLLTLNLSRNHLNGLLPAEFGNLRSIQTIDMSFNQLSGSIPAELGQ- 467 (943)
Q Consensus 389 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~- 467 (943)
.|..+..+++|+.|++++|.+++..+..+..+++|+.|+|++|.+....+. ..-...++.+..+.|.+....|..+.+
T Consensus 193 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~-~~~~~~l~~~~~~~~~~~c~~p~~l~g~ 271 (285)
T 1ozn_A 193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLAGR 271 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG-HHHHHHHHHCCSEECCCBEEESGGGTTC
T ss_pred CHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCc-HHHHHHHHhcccccCccccCCchHhCCc
Confidence 888999999999999999999977667788999999999999999754332 122345777788888888888887754
Q ss_pred -ccccceecccC
Q 002278 468 -LQNIISLILNN 478 (943)
Q Consensus 468 -l~~L~~L~L~~ 478 (943)
+..++..++.+
T Consensus 272 ~l~~l~~~~l~~ 283 (285)
T 1ozn_A 272 DLKRLAANDLQG 283 (285)
T ss_dssp BGGGSCGGGSCC
T ss_pred ChhhcCHHHhcc
Confidence 33444444433
No 315
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.96 E-value=3.1e-30 Score=282.39 Aligned_cols=265 Identities=22% Similarity=0.192 Sum_probs=192.1
Q ss_pred eEEEecCccccccCCccccccCCCcEEecCCCCCCCCCCcccCCCCCcceEEecCCCCCCCCCCCcCCCCcCcEEEcccC
Q 002278 232 ATLSLQGNKLTGKIPEVIGLMQALAVLDLSENELVGPIPPILGNLSYTGKLYLHGNKLTGPIPPELGNMSKLSYLQLQNN 311 (943)
Q Consensus 232 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 311 (943)
+.++++.+.+...+...+..+++|++|+|++|.+++..|..|..+++|+.|+|++|.+++..+ |..+++|++|++++|
T Consensus 13 ~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN 90 (317)
T ss_dssp EEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS
T ss_pred eEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC
Confidence 344555666655555556666778888888888887767777888888888888888875543 777888888888888
Q ss_pred ccccccccccCCcccceEEEccccccCCcCcccccCCCcCcEEEeeCCcccCcccccccccCccceeeccCCcCCCCCCC
Q 002278 312 QLVGTIPAELGKLEQLFELNLADNNLEGPIPHNISSCTALNQFNVHGNRLSGAIPSSFRNLGSLTYLNLSRNNFKGKVPT 391 (943)
Q Consensus 312 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 391 (943)
++++.. ..++|++|++++|++++..+.. +++|+.|++++|++++..+..|..+++|++|+|++|++++..+.
T Consensus 91 ~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 162 (317)
T 3o53_A 91 YVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162 (317)
T ss_dssp EEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGG
T ss_pred cccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHH
Confidence 877432 2377888888888887655443 46678888888888877777777888888888888888766555
Q ss_pred CC-CCCCCccEEecCCCcCCCccCCCcccccccceeecccccccccCCccccCCCccceecccCccccccCChhhhcccc
Q 002278 392 EL-GRIINLDTLDLSVNNFSGSVPASIGDLEHLLTLNLSRNHLNGLLPAEFGNLRSIQTIDMSFNQLSGSIPAELGQLQN 470 (943)
Q Consensus 392 ~~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 470 (943)
.+ ..+++|++|+|++|.+++. +. ...+++|++|+|++|++++. |..|..+++|+.|+|++|+|+ .+|..+..+++
T Consensus 163 ~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~ 238 (317)
T 3o53_A 163 ELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQN 238 (317)
T ss_dssp GGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTT
T ss_pred HHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCC
Confidence 55 3677788888888887744 32 23477788888888888754 444777888888888888887 56777778888
Q ss_pred cceecccCcccC-CCCCCcCccccCCcccccC-CccccccCC
Q 002278 471 IISLILNNNNLQ-GGIPDQLSNCFSLSNLNVS-YNNLSGIIP 510 (943)
Q Consensus 471 L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~ls-~N~l~~~~~ 510 (943)
|+.|+|++|+++ +.+|..+..+++|+.|+++ .+.++|..|
T Consensus 239 L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~ 280 (317)
T 3o53_A 239 LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280 (317)
T ss_dssp CCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSS
T ss_pred CCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCch
Confidence 888888888887 6667777777888888887 445555544
No 316
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=1.1e-29 Score=277.41 Aligned_cols=249 Identities=21% Similarity=0.224 Sum_probs=131.8
Q ss_pred CCCCCCEEEeeCCcccccCCCCccCCCCCcEEeccCCCcC-Cccchhcc-------ccccceEEEecCcccccCCCccc-
Q 002278 60 DLRNLQSIDFQGNKLTGQIPDEIGNCGSLVHIELSDNSLY-GDIPFSIS-------KLKQLEFLNLKNNQLTGPIPSTL- 130 (943)
Q Consensus 60 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~-------~l~~L~~L~Ls~n~l~~~~~~~~- 130 (943)
..++|++|++++|.+ .+|..+... |++|+|++|++. ..+|..+. ++++|++|+|++|++++.+|..+
T Consensus 41 ~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred cCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 344566666666666 455554443 666666666663 33444443 56677777777777766666655
Q ss_pred -CCCCCCcEEEEeccccccccchhcccc-----ccceeccccCCccCCCCCcccccccccceeeccceecccc--cCCCC
Q 002278 131 -TQIPNLKTLDLARNQLTGEIPRLIYWN-----EVLQYLGLRGNALTGMLSPDMCQLTGLWYFDVRGNNLTGT--IPDSI 202 (943)
Q Consensus 131 -~~l~~L~~L~Ls~N~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~--~~~~l 202 (943)
..+++|++|+|++|++++. |..+..+ ++|++|+|++|+++++.+..|..+++|++|+|++|++.+. .+..+
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 6667777777777777654 5555555 5555555555555555555555555555555555554432 11122
Q ss_pred --cCCCcccEEEeecccccCcCCCCCCcceEeEEEecCccccccCCccccccCCCcEEecCCCCCCCCCC-cccCCCCCc
Q 002278 203 --GNCTSFEILDISYNQITGEIPYNIGFLQVATLSLQGNKLTGKIPEVIGLMQALAVLDLSENELVGPIP-PILGNLSYT 279 (943)
Q Consensus 203 --~~l~~L~~L~Ls~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L 279 (943)
.++++|++|+|++|++++. + ......+..+++|+.|+|++|.+.+..| ..+..+++|
T Consensus 196 ~~~~l~~L~~L~L~~N~l~~~-~-------------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L 255 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNAGMETP-S-------------------GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL 255 (312)
T ss_dssp CTTSCTTCCEEECTTSCCCCH-H-------------------HHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTC
T ss_pred HhccCCCCCEEECCCCcCcch-H-------------------HHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCC
Confidence 4455555555555554410 0 1111223445566666666666655443 334444555
Q ss_pred ceEEecCCCCCCCCCCCcCCCCcCcEEEcccCccccccccccCCcccceEEEccccccC
Q 002278 280 GKLYLHGNKLTGPIPPELGNMSKLSYLQLQNNQLVGTIPAELGKLEQLFELNLADNNLE 338 (943)
Q Consensus 280 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 338 (943)
+.|+|++|+|+ .+|..+. ++|++|++++|+|++. |. +..+++|++|+|++|+++
T Consensus 256 ~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 256 NSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred CEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 55555555554 3343333 4455555555555433 32 444444444444444443
No 317
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=2.9e-30 Score=281.92 Aligned_cols=250 Identities=21% Similarity=0.211 Sum_probs=167.0
Q ss_pred ccccCCCcEEecCCCCCCCCCCcccCCCCCcceEEecCCCCC-CCCCCCcC-------CCCcCcEEEcccCccccccccc
Q 002278 249 IGLMQALAVLDLSENELVGPIPPILGNLSYTGKLYLHGNKLT-GPIPPELG-------NMSKLSYLQLQNNQLVGTIPAE 320 (943)
Q Consensus 249 l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~-------~l~~L~~L~L~~N~l~~~~~~~ 320 (943)
++..++|+.|++++|.+ .+|..+... |+.|+|++|.++ ..+|..+. ++++|++|++++|++++..|..
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 34445566666666666 344433332 666666666663 23333333 4666777777777776666665
Q ss_pred c--CCcccceEEEccccccCCcCcccccCC-----CcCcEEEeeCCcccCcccccccccCccceeeccCCcCCCC--CCC
Q 002278 321 L--GKLEQLFELNLADNNLEGPIPHNISSC-----TALNQFNVHGNRLSGAIPSSFRNLGSLTYLNLSRNNFKGK--VPT 391 (943)
Q Consensus 321 ~--~~l~~L~~L~L~~N~l~~~~p~~~~~l-----~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~ 391 (943)
+ ..+++|++|+|++|++++. |..+..+ ++|++|+|++|+|++..+..|..+++|++|+|++|++.+. .+.
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 193 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS 193 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred HHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence 4 6667777777777777655 5656555 6777777777777766667777777777777777776543 222
Q ss_pred CC--CCCCCccEEecCCCcCCCc---cCCCcccccccceeecccccccccCC-ccccCCCccceecccCccccccCChhh
Q 002278 392 EL--GRIINLDTLDLSVNNFSGS---VPASIGDLEHLLTLNLSRNHLNGLLP-AEFGNLRSIQTIDMSFNQLSGSIPAEL 465 (943)
Q Consensus 392 ~~--~~l~~L~~L~Ls~N~l~~~---~~~~~~~l~~L~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 465 (943)
.+ ..+++|++|+|++|+|++. ....+..+++|+.|+|++|++++..| ..+..+++|++|+|++|+|+ .+|..+
T Consensus 194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~ 272 (312)
T 1wwl_A 194 ALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGL 272 (312)
T ss_dssp HSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSC
T ss_pred HHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhc
Confidence 22 6777778888888877731 11234566788888888888877664 45666788888888888887 677766
Q ss_pred hcccccceecccCcccCCCCCCcCccccCCcccccCCcccccc
Q 002278 466 GQLQNIISLILNNNNLQGGIPDQLSNCFSLSNLNVSYNNLSGI 508 (943)
Q Consensus 466 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~ 508 (943)
. ++|+.|+|++|+|++. |. +..+++|++|++++|++++.
T Consensus 273 ~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 273 P--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp C--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred c--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 6 7888888888888855 55 77888888888888888753
No 318
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.95 E-value=2.9e-29 Score=274.62 Aligned_cols=229 Identities=17% Similarity=0.167 Sum_probs=171.6
Q ss_pred CccccccCCCcEEecCCCCCCCCCCcccCCCCCcceEEecCCCCCCCCCCCcCCCCcCcEEEcccCccccccccccCCcc
Q 002278 246 PEVIGLMQALAVLDLSENELVGPIPPILGNLSYTGKLYLHGNKLTGPIPPELGNMSKLSYLQLQNNQLVGTIPAELGKLE 325 (943)
Q Consensus 246 ~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 325 (943)
|..|..+++|++|+|++|.+.+..+ |..+++|++|+|++|++++.. ..++|++|++++|++++..+.. ++
T Consensus 51 ~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~ 120 (317)
T 3o53_A 51 AADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQ 120 (317)
T ss_dssp HHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CS
T ss_pred HHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEEECCCCccCCcCccc---cC
Confidence 3445555555555555555554332 555666666666666665322 2367777777777777554443 46
Q ss_pred cceEEEccccccCCcCcccccCCCcCcEEEeeCCcccCccccccc-ccCccceeeccCCcCCCCCCCCCCCCCCccEEec
Q 002278 326 QLFELNLADNNLEGPIPHNISSCTALNQFNVHGNRLSGAIPSSFR-NLGSLTYLNLSRNNFKGKVPTELGRIINLDTLDL 404 (943)
Q Consensus 326 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 404 (943)
+|++|++++|++++..+..+..+++|++|++++|++++..+..+. .+++|++|+|++|++++. +. ...+++|+.|+|
T Consensus 121 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~L 198 (317)
T 3o53_A 121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDL 198 (317)
T ss_dssp SCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEEC
T ss_pred CCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEEC
Confidence 688888888888877777788888888888888888877666664 688889999999988854 32 334889999999
Q ss_pred CCCcCCCccCCCcccccccceeecccccccccCCccccCCCccceecccCcccc-ccCChhhhcccccceeccc-CcccC
Q 002278 405 SVNNFSGSVPASIGDLEHLLTLNLSRNHLNGLLPAEFGNLRSIQTIDMSFNQLS-GSIPAELGQLQNIISLILN-NNNLQ 482 (943)
Q Consensus 405 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~L~-~N~l~ 482 (943)
++|++++ +|..+..+++|+.|+|++|++++ +|..+..+++|+.|+|++|+++ +.+|..+..+++|+.|+++ .+.++
T Consensus 199 s~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 199 SSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276 (317)
T ss_dssp CSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CCCcCCc-chhhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhcc
Confidence 9999995 55568999999999999999994 6788999999999999999998 7788999999999999999 45677
Q ss_pred CCCCCc
Q 002278 483 GGIPDQ 488 (943)
Q Consensus 483 ~~~p~~ 488 (943)
+..|..
T Consensus 277 ~~~~~~ 282 (317)
T 3o53_A 277 GQNEEE 282 (317)
T ss_dssp SSSSCC
T ss_pred CCchhc
Confidence 666543
No 319
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=4.2e-27 Score=277.70 Aligned_cols=267 Identities=27% Similarity=0.321 Sum_probs=136.8
Q ss_pred cceeccccCCccCCCCCcccccccccceeeccceecccccCCCCcCCCcccEEEeecccccCcCCCCCCcceEeEEEecC
Q 002278 159 VLQYLGLRGNALTGMLSPDMCQLTGLWYFDVRGNNLTGTIPDSIGNCTSFEILDISYNQITGEIPYNIGFLQVATLSLQG 238 (943)
Q Consensus 159 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~L~~L~L~~ 238 (943)
.++.|++++|.++.++. .+. ++|++|+|++|+|+. +|. .+++|++|+|++|+|+
T Consensus 41 ~l~~L~ls~n~L~~lp~-~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~------------------- 94 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPD-CLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT------------------- 94 (622)
T ss_dssp CCCEEECCSSCCSCCCS-CCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCS-------------------
T ss_pred CCcEEEecCCCcCccCh-hhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCC-------------------
Confidence 35555666665554432 221 445555555555552 222 3344555555555544
Q ss_pred ccccccCCccccccCCCcEEecCCCCCCCCCCcccCCCCCcceEEecCCCCCCCCCCCcCCCCcCcEEEcccCccccccc
Q 002278 239 NKLTGKIPEVIGLMQALAVLDLSENELVGPIPPILGNLSYTGKLYLHGNKLTGPIPPELGNMSKLSYLQLQNNQLVGTIP 318 (943)
Q Consensus 239 n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 318 (943)
+ +|. .+++|++|+|++|.+++. |. .+++|+.|++++|++++ +|.. +++|++|++++|++++ +|
T Consensus 95 ----~-lp~---~l~~L~~L~Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~ 157 (622)
T 3g06_A 95 ----S-LPV---LPPGLLELSIFSNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LP 157 (622)
T ss_dssp ----C-CCC---CCTTCCEEEECSCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CC
T ss_pred ----c-CCC---CCCCCCEEECcCCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cC
Confidence 2 222 345555555555555532 22 34555556666665553 3322 2556666666666653 22
Q ss_pred cccCCcccceEEEccccccCCcCcccccCCCcCcEEEeeCCcccCcccccccccCccceeeccCCcCCCCCCCCCCCCCC
Q 002278 319 AELGKLEQLFELNLADNNLEGPIPHNISSCTALNQFNVHGNRLSGAIPSSFRNLGSLTYLNLSRNNFKGKVPTELGRIIN 398 (943)
Q Consensus 319 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 398 (943)
. .+++|+.|++++|+|++ +| ..+++|+.|++++|+|++ +|.. +++|+.|++++|.++ .+|.. +++
T Consensus 158 ~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~---~~~ 222 (622)
T 3g06_A 158 A---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PSG 222 (622)
T ss_dssp C---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCC---CTT
T ss_pred C---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCC---CCC
Confidence 2 23455566666666653 22 334556666666666553 2221 345666666666665 33322 245
Q ss_pred ccEEecCCCcCCCccCCCcccccccceeecccccccccCCccccCCCccceecccCccccccCChhhhcccccceecccC
Q 002278 399 LDTLDLSVNNFSGSVPASIGDLEHLLTLNLSRNHLNGLLPAEFGNLRSIQTIDMSFNQLSGSIPAELGQLQNIISLILNN 478 (943)
Q Consensus 399 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 478 (943)
|+.|+|++|.|++ +| ..+++|+.|+|++|+|++ +|. .+++|+.|+|++|+|+ .+|..|..+++|+.|+|++
T Consensus 223 L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~ 293 (622)
T 3g06_A 223 LKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEG 293 (622)
T ss_dssp CCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCS
T ss_pred CCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecC
Confidence 6666666666653 33 234556666666666653 333 3455666666666665 4555566666666666666
Q ss_pred cccCCCCCCcCccc
Q 002278 479 NNLQGGIPDQLSNC 492 (943)
Q Consensus 479 N~l~~~~p~~~~~l 492 (943)
|++++.+|..+..+
T Consensus 294 N~l~~~~~~~l~~L 307 (622)
T 3g06_A 294 NPLSERTLQALREI 307 (622)
T ss_dssp CCCCHHHHHHHHHH
T ss_pred CCCCCcCHHHHHhc
Confidence 66665555544433
No 320
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=99.95 E-value=7.1e-29 Score=291.14 Aligned_cols=185 Identities=17% Similarity=0.118 Sum_probs=130.5
Q ss_pred EeeeceEEEEEEEec-CCceEEEEEecccC----------cccHHHHHHHHHHHhcC-CCCCcceeeeEEecCCcceEEE
Q 002278 624 VGYGASSTVYKCALK-NSRPIAVKKLYNQY----------PHNLREFETELETIGSI-RHRNIVSLHGYALSPYGNLLFY 691 (943)
Q Consensus 624 lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~----------~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~lv~ 691 (943)
.+.|++|.+..++.. -|+.||+|.+.... ....+++.+|+++|+++ .|+||++++++++++...||||
T Consensus 242 ~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLVM 321 (569)
T 4azs_A 242 PYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLVM 321 (569)
T ss_dssp -C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEEE
T ss_pred cccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEEE
Confidence 566777777666533 47889999986432 12345689999999999 6999999999999999999999
Q ss_pred EEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccCCC
Q 002278 692 DYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIPTA 771 (943)
Q Consensus 692 e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~~~ 771 (943)
||++||+|.+++.. .++++.. +|+.||+.||+|+|++ |||||||||+|||++++|++||+|||+|+.....
T Consensus 322 Eyv~G~~L~d~i~~---~~~l~~~---~I~~QIl~AL~ylH~~---GIIHRDIKPeNILL~~dg~vKL~DFGlAr~~~~~ 392 (569)
T 4azs_A 322 EKLPGRLLSDMLAA---GEEIDRE---KILGSLLRSLAALEKQ---GFWHDDVRPWNVMVDARQHARLIDFGSIVTTPQD 392 (569)
T ss_dssp ECCCSEEHHHHHHT---TCCCCHH---HHHHHHHHHHHHHHHT---TCEESCCCGGGEEECTTSCEEECCCTTEESCC--
T ss_pred ecCCCCcHHHHHHh---CCCCCHH---HHHHHHHHHHHHHHHC---CceeccCchHhEEECCCCCEEEeecccCeeCCCC
Confidence 99999999999973 4456654 5889999999999999 9999999999999999999999999999877544
Q ss_pred CCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCC
Q 002278 772 MPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAV 819 (943)
Q Consensus 772 ~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~ 819 (943)
... ....+||+.|||||++.+. +..++|+||+|++++++.+|..++
T Consensus 393 ~~~-~~t~vGTp~YmAPE~l~g~-~~~~~d~~s~g~~~~~l~~~~~~~ 438 (569)
T 4azs_A 393 CSW-PTNLVQSFFVFVNELFAEN-KSWNGFWRSAPVHPFNLPQPWSNW 438 (569)
T ss_dssp -CC-SHHHHHHHHHHHHHHC------------------CCCCTTHHHH
T ss_pred Ccc-ccCceechhhccHHHhCCC-CCCcccccccccchhhhccccchh
Confidence 332 2335699999999998764 677899999999998887665443
No 321
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.95 E-value=1.5e-31 Score=320.36 Aligned_cols=432 Identities=15% Similarity=0.133 Sum_probs=255.4
Q ss_pred CCCCcceeEecCCCCcEEEEEcCCCCCccccCCCcCCCCCCCEEEeeCCccc---ccCCCC------------ccCCCCC
Q 002278 24 DFCSWRGVFCDNSSLSVVSLNLSSLNLGGEISPSIGDLRNLQSIDFQGNKLT---GQIPDE------------IGNCGSL 88 (943)
Q Consensus 24 ~~c~w~gv~c~~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~---~~~p~~------------~~~l~~L 88 (943)
-|++|+++.. .....++++..... .....+..+++|++|+|+++... +..|.. +..+++|
T Consensus 33 vck~W~~~~~----~~~~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L 107 (594)
T 2p1m_B 33 VCKSWYEIER----WCRRKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWL 107 (594)
T ss_dssp SCHHHHHHHH----HHCCEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTC
T ss_pred HHHHHHHhhh----hhceEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCC
Confidence 5668998822 22345666554322 12234678899999999997532 122221 3467899
Q ss_pred cEEeccCCCcCCccchhcc-ccccceEEEecCc-ccccC-CCcccCCCCCCcEEEEeccccccccchhcc----ccccce
Q 002278 89 VHIELSDNSLYGDIPFSIS-KLKQLEFLNLKNN-QLTGP-IPSTLTQIPNLKTLDLARNQLTGEIPRLIY----WNEVLQ 161 (943)
Q Consensus 89 ~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~----~l~~L~ 161 (943)
++|+|++|.+++..+..+. .+++|++|+|++| .++.. ++..+.++++|++|+|++|.+++..+..+. .+++|+
T Consensus 108 ~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~ 187 (594)
T 2p1m_B 108 EEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLV 187 (594)
T ss_dssp CEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCC
T ss_pred CeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCc
Confidence 9999999998877777775 6899999999998 55532 344555789999999999988765554444 556888
Q ss_pred eccccCCccCCCCCcccc----cccccceeeccce-ecccccCCCCcCCCcccEEEeecccccCcCCCCCCcceEeEEEe
Q 002278 162 YLGLRGNALTGMLSPDMC----QLTGLWYFDVRGN-NLTGTIPDSIGNCTSFEILDISYNQITGEIPYNIGFLQVATLSL 236 (943)
Q Consensus 162 ~L~L~~n~l~~~~~~~~~----~l~~L~~L~L~~N-~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~L~~L~L 236 (943)
+|++++|. ..+....+. .+++|++|++++| .+.+ ++..+..+++|++|+++.+.. ++
T Consensus 188 ~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~----------------~~ 249 (594)
T 2p1m_B 188 SLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTA----------------EV 249 (594)
T ss_dssp EEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBCCC----------------CC
T ss_pred EEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccccC----------------cc
Confidence 88888887 333333333 3588888888887 4443 666777788888888765532 12
Q ss_pred cCccccccCCccccccCCCcEE-ecCCCCCCCCCCcccCCCCCcceEEecCCCCCCCCC-CCcCCCCcCcEEEcccCccc
Q 002278 237 QGNKLTGKIPEVIGLMQALAVL-DLSENELVGPIPPILGNLSYTGKLYLHGNKLTGPIP-PELGNMSKLSYLQLQNNQLV 314 (943)
Q Consensus 237 ~~n~l~~~~~~~l~~l~~L~~L-~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~ 314 (943)
..+.+.+ ++..+..+++|+.| .+.+... +.++..+..+++|++|+|++|.+++... ..+..+++|+.|++++| +.
T Consensus 250 ~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~ 326 (594)
T 2p1m_B 250 RPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IE 326 (594)
T ss_dssp CHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GH
T ss_pred chhhHHH-HHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cC
Confidence 2334443 33456677777777 3433322 1233444456677777777777553211 12446677777777777 33
Q ss_pred cc-cccccCCcccceEEEcc---------ccccCCcCccccc-CCCcCcEEEeeCCcccCccccccc-ccCccceeecc-
Q 002278 315 GT-IPAELGKLEQLFELNLA---------DNNLEGPIPHNIS-SCTALNQFNVHGNRLSGAIPSSFR-NLGSLTYLNLS- 381 (943)
Q Consensus 315 ~~-~~~~~~~l~~L~~L~L~---------~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~- 381 (943)
.. ++.....+++|++|+++ .+.+++.....+. .+++|+.|.++.|.+++.....+. .+++|+.|+|+
T Consensus 327 ~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~ 406 (594)
T 2p1m_B 327 DAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCI 406 (594)
T ss_dssp HHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEE
T ss_pred HHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeec
Confidence 22 22222346677777773 3344432222222 367777777777777654444444 46777777777
Q ss_pred -C----CcCCCCCC-----CCCCCCCCccEEecCCCcCCCccCCCccc-ccccceeecccccccccCCccc-cCCCccce
Q 002278 382 -R----NNFKGKVP-----TELGRIINLDTLDLSVNNFSGSVPASIGD-LEHLLTLNLSRNHLNGLLPAEF-GNLRSIQT 449 (943)
Q Consensus 382 -~----N~l~~~~~-----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~ 449 (943)
+ |.++.... ..+..+++|+.|++++ .+++..+..+.. +++|+.|+|++|.+++..+..+ .++++|++
T Consensus 407 ~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~ 485 (594)
T 2p1m_B 407 IEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRK 485 (594)
T ss_dssp SSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCE
T ss_pred ccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCE
Confidence 3 34431110 1134455666666655 444333333333 5666666666666654433333 44566666
Q ss_pred ecccCccccccCCh-hhhcccccceecccCcccC
Q 002278 450 IDMSFNQLSGSIPA-ELGQLQNIISLILNNNNLQ 482 (943)
Q Consensus 450 L~Ls~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~ 482 (943)
|+|++|++++..+. .+..+++|+.|++++|+++
T Consensus 486 L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 486 LEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp EEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred EECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 66666666433322 2334566666666666653
No 322
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=2.3e-28 Score=283.05 Aligned_cols=245 Identities=22% Similarity=0.225 Sum_probs=182.0
Q ss_pred CCCCcceEEecCCCCCCCCCCCcCCCCcCcEEEcccCccccccccccCCcccceEEEccccccCCcCcccccCCCcCcEE
Q 002278 275 NLSYTGKLYLHGNKLTGPIPPELGNMSKLSYLQLQNNQLVGTIPAELGKLEQLFELNLADNNLEGPIPHNISSCTALNQF 354 (943)
Q Consensus 275 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 354 (943)
..++|+.|+|++|.+++..|..|..+++|++|+|++|.+++..| +..+++|++|+|++|.|++..+ .++|+.|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEE
Confidence 34478888888888887777788888888888888888876555 7888888888888888875433 2788888
Q ss_pred EeeCCcccCcccccccccCccceeeccCCcCCCCCCCCCCCCCCccEEecCCCcCCCccCCCcc-cccccceeecccccc
Q 002278 355 NVHGNRLSGAIPSSFRNLGSLTYLNLSRNNFKGKVPTELGRIINLDTLDLSVNNFSGSVPASIG-DLEHLLTLNLSRNHL 433 (943)
Q Consensus 355 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l 433 (943)
++++|.|++..+.. +++|+.|+|++|.+++..|..++.+++|+.|+|++|.+++..|..+. .+++|+.|+|++|.|
T Consensus 105 ~L~~N~l~~~~~~~---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 105 HAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp ECCSSCCCCEEECC---CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ECcCCcCCCCCccc---cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 88888888665543 46788888888888877777888888888888888888877777775 678888888888888
Q ss_pred cccCCccccCCCccceecccCccccccCChhhhcccccceecccCcccCCCCCCcCccccCCcccccCCcccc-ccCCC-
Q 002278 434 NGLLPAEFGNLRSIQTIDMSFNQLSGSIPAELGQLQNIISLILNNNNLQGGIPDQLSNCFSLSNLNVSYNNLS-GIIPP- 511 (943)
Q Consensus 434 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~-~~~~~- 511 (943)
++..+ +..+++|+.|+|++|+|++ +|..|..+++|+.|+|++|+|++ +|..+..+++|+.|++++|++. +.+|.
T Consensus 182 ~~~~~--~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~ 257 (487)
T 3oja_A 182 YDVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDF 257 (487)
T ss_dssp CEEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHH
T ss_pred ccccc--cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHH
Confidence 86532 3357888888888888885 55558888888888888888884 6667788888888888888887 33322
Q ss_pred CcccCcCCCCccc-------cCCCCCCCC
Q 002278 512 IRNFSRFSSNSFI-------GNPLLCGNW 533 (943)
Q Consensus 512 ~~~~~~~~~~~~~-------~Np~~c~~~ 533 (943)
+..+..+..+... +|++.|+++
T Consensus 258 ~~~l~~L~~l~~~~~~~~~~~~~~~c~~~ 286 (487)
T 3oja_A 258 FSKNQRVQTVAKQTVKKLTGQNEEECTVP 286 (487)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSSSCCCSST
T ss_pred HHhCCCCcEEeccccccccCCCcccccCC
Confidence 2223333333332 677777654
No 323
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=6.3e-27 Score=249.86 Aligned_cols=193 Identities=27% Similarity=0.304 Sum_probs=138.0
Q ss_pred CCCCCcceeEecCCCCcEEEEEcCCCCCccccCCCcCCCCCCCEEEeeCCcccccCCCCccCCCCCcEEeccCCCcCCcc
Q 002278 23 SDFCSWRGVFCDNSSLSVVSLNLSSLNLGGEISPSIGDLRNLQSIDFQGNKLTGQIPDEIGNCGSLVHIELSDNSLYGDI 102 (943)
Q Consensus 23 ~~~c~w~gv~c~~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 102 (943)
.|+|.|.|+.|.-.. .++.+++++++++ .+|..+. ++|++|+|++|+|++..+..|.++++|++|+|++|+++...
T Consensus 2 ~~~C~~~~~~C~c~~-~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~ 77 (270)
T 2o6q_A 2 EALCKKDGGVCSCNN-NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP 77 (270)
T ss_dssp CCCBGGGTCSBEEET-TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred CccCCCCCCCCEeCC-CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence 599999999996432 3456888888888 5776654 57888888888888666667888888888888888888555
Q ss_pred chhccccccceEEEecCcccccCCCcccCCCCCCcEEEEeccccccccchhccccccceeccccCCccCCCCCccccccc
Q 002278 103 PFSISKLKQLEFLNLKNNQLTGPIPSTLTQIPNLKTLDLARNQLTGEIPRLIYWNEVLQYLGLRGNALTGMLSPDMCQLT 182 (943)
Q Consensus 103 p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 182 (943)
+..|.++++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|+++++++..|..++
T Consensus 78 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 157 (270)
T 2o6q_A 78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157 (270)
T ss_dssp TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCc
Confidence 55677888888888888888876667777888888888888887766666666666666666666666666555555566
Q ss_pred ccceeeccceecccccCCCCcCCCcccEEEeeccccc
Q 002278 183 GLWYFDVRGNNLTGTIPDSIGNCTSFEILDISYNQIT 219 (943)
Q Consensus 183 ~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~ 219 (943)
+|++|+|++|++++..+..|.++++|++|+|++|+++
T Consensus 158 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (270)
T 2o6q_A 158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194 (270)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC
Confidence 6666666666555544445555555555555555554
No 324
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=5.8e-26 Score=243.39 Aligned_cols=210 Identities=20% Similarity=0.245 Sum_probs=131.1
Q ss_pred cCcEEEcccCccccccccccCCcccceEEEccccccCCcCcccccCCCcCcEEEeeCCcccCcccccccccCccceeecc
Q 002278 302 KLSYLQLQNNQLVGTIPAELGKLEQLFELNLADNNLEGPIPHNISSCTALNQFNVHGNRLSGAIPSSFRNLGSLTYLNLS 381 (943)
Q Consensus 302 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 381 (943)
+|++|++++|++++..+..|.++++|++|+|++|++++..+..|..+++|++|++++|++++..+..|.++++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 45555555555554444455555555555555555555555555555666666666666655555556666666666666
Q ss_pred CCcCCCCCCCCCCCCCCccEEecCCCcCCCc-cCCCcccccccceeecccccccccCCccccCCCccc----eecccCcc
Q 002278 382 RNNFKGKVPTELGRIINLDTLDLSVNNFSGS-VPASIGDLEHLLTLNLSRNHLNGLLPAEFGNLRSIQ----TIDMSFNQ 456 (943)
Q Consensus 382 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~----~L~Ls~N~ 456 (943)
+|++++..+..+..+++|++|++++|.+++. +|..|..+++|+.|+|++|++++..+..|..+++|+ .|++++|+
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~ 188 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence 6666655555566666666666666666642 466666677777777777777666666666666555 67777777
Q ss_pred ccccCChhhhcccccceecccCcccCCCCCCcCccccCCcccccCCccccccCCCC
Q 002278 457 LSGSIPAELGQLQNIISLILNNNNLQGGIPDQLSNCFSLSNLNVSYNNLSGIIPPI 512 (943)
Q Consensus 457 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~ 512 (943)
+++..+..+ ...+|+.|+|++|++++..+..+..+++|+.|++++|++++..|.+
T Consensus 189 l~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 189 MNFIQPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp CCEECTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred ccccCcccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence 774433333 3346777777777777665656677777777777777777665543
No 325
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=1.8e-25 Score=239.50 Aligned_cols=224 Identities=21% Similarity=0.230 Sum_probs=162.6
Q ss_pred EEecCCCCCCCCCCcccCCCCCcceEEecCCCCCCCCCCCcCCCCcCcEEEcccCccccccccccCCcccceEEEccccc
Q 002278 257 VLDLSENELVGPIPPILGNLSYTGKLYLHGNKLTGPIPPELGNMSKLSYLQLQNNQLVGTIPAELGKLEQLFELNLADNN 336 (943)
Q Consensus 257 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 336 (943)
.++.++..+. .+|..+. ++|++|+|++|++++..+..|.++++|++|++++|++++..+..|..+++|++|+|++|+
T Consensus 11 ~~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EEECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 3445555554 2343332 356667777777766555567777777777777777776666677777777777777777
Q ss_pred cCCcCcccccCCCcCcEEEeeCCcccCcccccccccCccceeeccCCcCCCC-CCCCCCCCCCccEEecCCCcCCCccCC
Q 002278 337 LEGPIPHNISSCTALNQFNVHGNRLSGAIPSSFRNLGSLTYLNLSRNNFKGK-VPTELGRIINLDTLDLSVNNFSGSVPA 415 (943)
Q Consensus 337 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 415 (943)
+++..+..|.++++|++|++++|.+.+..+..|..+++|++|++++|++++. +|..+..+++|+.|++++|++++..+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~ 167 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH
Confidence 7766667777777777777777777766666777777888888888887753 477788888888888888888876667
Q ss_pred Ccccccccc----eeecccccccccCCccccCCCccceecccCccccccCChhhhcccccceecccCcccCCC
Q 002278 416 SIGDLEHLL----TLNLSRNHLNGLLPAEFGNLRSIQTIDMSFNQLSGSIPAELGQLQNIISLILNNNNLQGG 484 (943)
Q Consensus 416 ~~~~l~~L~----~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 484 (943)
.+..+++|+ .|++++|++++..+..+.. .+|+.|+|++|+|++..+..|..+++|+.|+|++|++++.
T Consensus 168 ~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp GGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCC
T ss_pred HhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCccccc
Confidence 777777776 7888888888766655554 4788899999988866566678888899999999988753
No 326
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=2.7e-29 Score=300.61 Aligned_cols=414 Identities=14% Similarity=0.142 Sum_probs=283.1
Q ss_pred cEEEEEcCCCCCccccC---C------------CcCCCCCCCEEEeeCCcccccCCCCcc-CCCCCcEEeccCC-CcCCc
Q 002278 39 SVVSLNLSSLNLGGEIS---P------------SIGDLRNLQSIDFQGNKLTGQIPDEIG-NCGSLVHIELSDN-SLYGD 101 (943)
Q Consensus 39 ~v~~L~l~~~~~~~~~~---~------------~l~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~~L~Ls~N-~l~~~ 101 (943)
+++.|+|+++.....+. . ....+++|++|+|++|.+++..+..+. .+++|++|+|++| .++..
T Consensus 67 ~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~ 146 (594)
T 2p1m_B 67 KVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTD 146 (594)
T ss_dssp TCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHH
T ss_pred CceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHH
Confidence 46789999876432221 1 134688999999999999877776665 6999999999999 55532
Q ss_pred -cchhccccccceEEEecCcccccCCCcccC----CCCCCcEEEEeccc--ccc-ccchhccccccceeccccCC-ccCC
Q 002278 102 -IPFSISKLKQLEFLNLKNNQLTGPIPSTLT----QIPNLKTLDLARNQ--LTG-EIPRLIYWNEVLQYLGLRGN-ALTG 172 (943)
Q Consensus 102 -~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~----~l~~L~~L~Ls~N~--l~~-~~~~~~~~l~~L~~L~L~~n-~l~~ 172 (943)
++..+..+++|++|+|++|.+++..+..+. .+++|++|+|++|. ++. .++..+..+++|++|+|++| .+.+
T Consensus 147 ~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~ 226 (594)
T 2p1m_B 147 GLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK 226 (594)
T ss_dssp HHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH
T ss_pred HHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH
Confidence 445556899999999999998876555444 67799999999997 321 22333455699999999999 4544
Q ss_pred CCCcccccccccceeeccc-------eecccccCCCCcCCCcccEE-EeecccccCcCCCCCCcceEeEEEecCcccccc
Q 002278 173 MLSPDMCQLTGLWYFDVRG-------NNLTGTIPDSIGNCTSFEIL-DISYNQITGEIPYNIGFLQVATLSLQGNKLTGK 244 (943)
Q Consensus 173 ~~~~~~~~l~~L~~L~L~~-------N~i~~~~~~~l~~l~~L~~L-~Ls~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~ 244 (943)
.+..+..+++|++|+++. |.+.+ ++..+.++++|+.| .+.+... ..
T Consensus 227 -l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~------------------------~~ 280 (594)
T 2p1m_B 227 -LATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP------------------------AY 280 (594)
T ss_dssp -HHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG------------------------GG
T ss_pred -HHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch------------------------hh
Confidence 556677889999999544 44554 33467888999888 3332211 12
Q ss_pred CCccccccCCCcEEecCCCCCCCCC-CcccCCCCCcceEEecCCCCCCC-CCCCcCCCCcCcEEEcc---------cCcc
Q 002278 245 IPEVIGLMQALAVLDLSENELVGPI-PPILGNLSYTGKLYLHGNKLTGP-IPPELGNMSKLSYLQLQ---------NNQL 313 (943)
Q Consensus 245 ~~~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~---------~N~l 313 (943)
++..+..+++|+.|+|++|.+.+.. ...+..+++|++|++++| ++.. ++.....+++|++|+++ .+.+
T Consensus 281 l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l 359 (594)
T 2p1m_B 281 LPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVAL 359 (594)
T ss_dssp GGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCC
T ss_pred HHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCC
Confidence 3444556777888888887765322 223556778888888877 3321 11122346788888883 3455
Q ss_pred ccccccccC-CcccceEEEccccccCCcCccccc-CCCcCcEEEee--C----CcccCc-----ccccccccCccceeec
Q 002278 314 VGTIPAELG-KLEQLFELNLADNNLEGPIPHNIS-SCTALNQFNVH--G----NRLSGA-----IPSSFRNLGSLTYLNL 380 (943)
Q Consensus 314 ~~~~~~~~~-~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~--~----N~l~~~-----~~~~~~~l~~L~~L~L 380 (943)
++.....+. .+++|+.|.++.|.+++.....+. .+++|+.|+++ + |.++.. ++..+..+++|+.|+|
T Consensus 360 ~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L 439 (594)
T 2p1m_B 360 TEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSL 439 (594)
T ss_dssp CHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEEC
T ss_pred CHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEee
Confidence 433333333 378888888888888766555554 57889999998 4 556522 2223667889999999
Q ss_pred cCCcCCCCCCCCCCC-CCCccEEecCCCcCCCccCCCc-ccccccceeecccccccccCCc-cccCCCccceecccCccc
Q 002278 381 SRNNFKGKVPTELGR-IINLDTLDLSVNNFSGSVPASI-GDLEHLLTLNLSRNHLNGLLPA-EFGNLRSIQTIDMSFNQL 457 (943)
Q Consensus 381 ~~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~N~l 457 (943)
++ .+++..+..+.. +++|+.|+|++|.+++..+..+ ..+++|+.|+|++|.+++.... .+..+++|+.|++++|++
T Consensus 440 ~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 440 SG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred cC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 77 555444444444 7889999999999875544444 6689999999999999654443 445689999999999998
Q ss_pred cccCChhh-hcccccceecccCcc
Q 002278 458 SGSIPAEL-GQLQNIISLILNNNN 480 (943)
Q Consensus 458 ~~~~p~~~-~~l~~L~~L~L~~N~ 480 (943)
+......+ ..+++|+...+..+.
T Consensus 519 ~~~~~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 519 SFGACKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp BHHHHHHHHHHCTTEEEEEECSSS
T ss_pred CHHHHHHHHHhCCCCEEEEecCCC
Confidence 64333334 456666665555543
No 327
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.93 E-value=2e-25 Score=240.22 Aligned_cols=206 Identities=22% Similarity=0.249 Sum_probs=113.4
Q ss_pred cCCCCcCcEEEcccCccccccccccCCcccceEEEccccccCCcCcccccCCCcCcEEEeeCCcccCcccccccccCccc
Q 002278 297 LGNMSKLSYLQLQNNQLVGTIPAELGKLEQLFELNLADNNLEGPIPHNISSCTALNQFNVHGNRLSGAIPSSFRNLGSLT 376 (943)
Q Consensus 297 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 376 (943)
+.++++|+.+++++|.++ .+|..+. ++++.|+|++|+|++..+..|..+++|++|+|++|.|++..+. ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 455666777777777776 3444333 4566667777766666666666666666666666666543222 4555555
Q ss_pred eeeccCCcCCCCCCCCCCCCCCccEEecCCCcCCCccCCCcccccccceeecccccccccCCccccCCCccceecccCcc
Q 002278 377 YLNLSRNNFKGKVPTELGRIINLDTLDLSVNNFSGSVPASIGDLEHLLTLNLSRNHLNGLLPAEFGNLRSIQTIDMSFNQ 456 (943)
Q Consensus 377 ~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 456 (943)
+|+|++|+++ .+|..+..+++|+.|+|++|+|++..+..|.++++|++|+|++|+|++..+..|..+++|+.|+|++|+
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 5555555555 444455555555555555555554444445555555555555555554444445555555555555555
Q ss_pred ccccCChhhhcccccceecccCcccCCCCCCcCccccCCcccccCCccccccCCCCcccCcCCCCccccCCCCCCC
Q 002278 457 LSGSIPAELGQLQNIISLILNNNNLQGGIPDQLSNCFSLSNLNVSYNNLSGIIPPIRNFSRFSSNSFIGNPLLCGN 532 (943)
Q Consensus 457 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~~~~~~~~~Np~~c~~ 532 (943)
|+ +..+..+..+++|+.|+|++|+|+.+++.......+..+.+.||||.|+|
T Consensus 160 l~------------------------~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 160 LT------------------------ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp CS------------------------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred CC------------------------ccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccCcC
Confidence 55 33333344444444444444444444443333344445556677777764
No 328
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=3.7e-24 Score=228.31 Aligned_cols=204 Identities=25% Similarity=0.327 Sum_probs=133.4
Q ss_pred CCCcEEecCCCCCCCCCCcccCCCCCcceEEecCCCCCCCCCCCcCCCCcCcEEEcccCccccccccccCCcccceEEEc
Q 002278 253 QALAVLDLSENELVGPIPPILGNLSYTGKLYLHGNKLTGPIPPELGNMSKLSYLQLQNNQLVGTIPAELGKLEQLFELNL 332 (943)
Q Consensus 253 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 332 (943)
.+.+.++++++.++. +|..+. ++++.|+|++|++++..+..|..+++|++|++++|+++...+..|..+++|++|+|
T Consensus 16 ~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 16 NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence 456777888777774 444333 46777777777777666667777777777777777777555555667777777777
Q ss_pred cccccCCcCcccccCCCcCcEEEeeCCcccCcccccccccCccceeeccCCcCCCCCCCCCCCCCCccEEecCCCcCCCc
Q 002278 333 ADNNLEGPIPHNISSCTALNQFNVHGNRLSGAIPSSFRNLGSLTYLNLSRNNFKGKVPTELGRIINLDTLDLSVNNFSGS 412 (943)
Q Consensus 333 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 412 (943)
++|++++..+..|..+++|++|++++|++++..+..|..+++|++|+|++|++++..+..+..+++|+.|+|++|.+++.
T Consensus 93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence 77777766666666666777777777766666666666666666666666666655455566666666666666666655
Q ss_pred cCCCcccccccceeecccccccccCCccccCCCccceecccCccccc
Q 002278 413 VPASIGDLEHLLTLNLSRNHLNGLLPAEFGNLRSIQTIDMSFNQLSG 459 (943)
Q Consensus 413 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 459 (943)
.+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|.+..
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 55556666666666666666665555556666666666666666553
No 329
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.92 E-value=4.9e-25 Score=235.38 Aligned_cols=160 Identities=23% Similarity=0.322 Sum_probs=80.5
Q ss_pred ccCCCcCcEEEeeCCcccCcccccccccCccceeeccCCcCCCCCCCCCCCCCCccEEecCCCcCCCccCCCcccccccc
Q 002278 345 ISSCTALNQFNVHGNRLSGAIPSSFRNLGSLTYLNLSRNNFKGKVPTELGRIINLDTLDLSVNNFSGSVPASIGDLEHLL 424 (943)
Q Consensus 345 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 424 (943)
+..+++|++|++++|.+++..+..|..+++|++|+|++|++++..+..+..+++|+.|++++|++++..+..|..+++|+
T Consensus 81 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 160 (272)
T 3rfs_A 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLT 160 (272)
T ss_dssp GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred hcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCC
Confidence 33444444444444444434444444444444444444444444444444445555555555555544444445555555
Q ss_pred eeecccccccccCCccccCCCccceecccCccccccCChhhhcccccceecccCcccCCCCCCcCccccCCcccccCCcc
Q 002278 425 TLNLSRNHLNGLLPAEFGNLRSIQTIDMSFNQLSGSIPAELGQLQNIISLILNNNNLQGGIPDQLSNCFSLSNLNVSYNN 504 (943)
Q Consensus 425 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~ 504 (943)
.|+|++|++++..+..|.++++|+.|+|++|++++..|..|..+++|+.|+|++|++.+. +++|+.|+++.|.
T Consensus 161 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~ 233 (272)
T 3rfs_A 161 ELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINK 233 (272)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHH
T ss_pred EEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHh
Confidence 555555555544444455555555555555555544444455555555555555555432 3345566666666
Q ss_pred ccccCCC
Q 002278 505 LSGIIPP 511 (943)
Q Consensus 505 l~~~~~~ 511 (943)
++|.+|.
T Consensus 234 ~~g~ip~ 240 (272)
T 3rfs_A 234 HSGVVRN 240 (272)
T ss_dssp TGGGBBC
T ss_pred CCCcccC
Confidence 6665553
No 330
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=1.5e-24 Score=233.36 Aligned_cols=205 Identities=22% Similarity=0.243 Sum_probs=186.9
Q ss_pred ccCCCCCcceEEecCCCCCCCCCCCcCCCCcCcEEEcccCccccccccccCCcccceEEEccccccCCcCcccccCCCcC
Q 002278 272 ILGNLSYTGKLYLHGNKLTGPIPPELGNMSKLSYLQLQNNQLVGTIPAELGKLEQLFELNLADNNLEGPIPHNISSCTAL 351 (943)
Q Consensus 272 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 351 (943)
.+.++++++++++++|.++. +|..+. ++|+.|+|++|.+++..+..|..+++|+.|+|++|.|++..+. ..+++|
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~-ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L 79 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVL 79 (290)
T ss_dssp EEECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTC
T ss_pred cccccCCccEEECCCCCCCc-CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcC
Confidence 36788999999999999994 565554 6899999999999988899999999999999999999965443 789999
Q ss_pred cEEEeeCCcccCcccccccccCccceeeccCCcCCCCCCCCCCCCCCccEEecCCCcCCCccCCCcccccccceeecccc
Q 002278 352 NQFNVHGNRLSGAIPSSFRNLGSLTYLNLSRNNFKGKVPTELGRIINLDTLDLSVNNFSGSVPASIGDLEHLLTLNLSRN 431 (943)
Q Consensus 352 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 431 (943)
++|++++|+|+ .+|..+..+++|++|+|++|++++..+..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 99999999998 67888999999999999999999888889999999999999999999888888999999999999999
Q ss_pred cccccCCccccCCCccceecccCccccccCChhhhcccccceecccCcccCC
Q 002278 432 HLNGLLPAEFGNLRSIQTIDMSFNQLSGSIPAELGQLQNIISLILNNNNLQG 483 (943)
Q Consensus 432 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 483 (943)
+|++..+..|..+++|+.|+|++|+|+ .+|..+..+.+|+.|+|++|++..
T Consensus 159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 999877788899999999999999999 789888889999999999999863
No 331
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.92 E-value=6.5e-25 Score=231.45 Aligned_cols=193 Identities=19% Similarity=0.202 Sum_probs=175.6
Q ss_pred CCCCCcceeEecCCCCcEEEEEcCCCCCccccCCCcCCCCCCCEEEeeCCcccccCCCCccCCCCCcEEeccCCCcCCcc
Q 002278 23 SDFCSWRGVFCDNSSLSVVSLNLSSLNLGGEISPSIGDLRNLQSIDFQGNKLTGQIPDEIGNCGSLVHIELSDNSLYGDI 102 (943)
Q Consensus 23 ~~~c~w~gv~c~~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 102 (943)
.+||.|.|..|... ...+++++++++ .+|..+. ++|+.|+|++|+|++..+..|.++++|++|+|++|++++..
T Consensus 2 ~~Cp~~~gC~C~~~---~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 75 (251)
T 3m19_A 2 KTCETVTGCTCNEG---KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS 75 (251)
T ss_dssp --CHHHHSSEEEGG---GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC
T ss_pred ccCCCCCceEcCCC---CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccC
Confidence 37999999999543 236899999999 7887776 68999999999999888889999999999999999999888
Q ss_pred chhccccccceEEEecCcccccCCCcccCCCCCCcEEEEeccccccccchhccccccceeccccCCccCCCCCccccccc
Q 002278 103 PFSISKLKQLEFLNLKNNQLTGPIPSTLTQIPNLKTLDLARNQLTGEIPRLIYWNEVLQYLGLRGNALTGMLSPDMCQLT 182 (943)
Q Consensus 103 p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 182 (943)
|..|..+++|++|+|++|++++..+..|..+++|++|+|++|+|++..+..|..+++|++|+|++|+|+++++..|..++
T Consensus 76 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 155 (251)
T 3m19_A 76 AGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT 155 (251)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred HhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCc
Confidence 88899999999999999999988888999999999999999999988888889999999999999999999998999999
Q ss_pred ccceeeccceecccccCCCCcCCCcccEEEeecccccCc
Q 002278 183 GLWYFDVRGNNLTGTIPDSIGNCTSFEILDISYNQITGE 221 (943)
Q Consensus 183 ~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~ 221 (943)
+|++|+|++|++++..+..|..+++|++|+|++|+++..
T Consensus 156 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 156 NLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 999999999999988888999999999999999999754
No 332
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=3.2e-24 Score=228.98 Aligned_cols=209 Identities=23% Similarity=0.285 Sum_probs=143.2
Q ss_pred CCCCcceEEecCCCCCCCCCCCcCCCCcCcEEEcccCccccccccccCCcccceEEEccccccCCcCcccccCCCcCcEE
Q 002278 275 NLSYTGKLYLHGNKLTGPIPPELGNMSKLSYLQLQNNQLVGTIPAELGKLEQLFELNLADNNLEGPIPHNISSCTALNQF 354 (943)
Q Consensus 275 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 354 (943)
.+++|+.|++++|.++.. ..+..+++|++|++++|.+++. ..+..+++|++|+|++|.+++..+..|..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred cccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 344444555555544421 2355556666666666666532 255666666666666666666666666666677777
Q ss_pred EeeCCcccCcccccccccCccceeeccCCcCCCCCCCCCCCCCCccEEecCCCcCCCccCCCcccccccceeeccccccc
Q 002278 355 NVHGNRLSGAIPSSFRNLGSLTYLNLSRNNFKGKVPTELGRIINLDTLDLSVNNFSGSVPASIGDLEHLLTLNLSRNHLN 434 (943)
Q Consensus 355 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 434 (943)
++++|++++..+..|..+++|++|+|++|++++..+..+..+++|+.|++++|++++..+..|..+++|+.|+|++|+++
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 77777776666666777777777777777777666666677777777777777777666666777788888888888888
Q ss_pred ccCCccccCCCccceecccCccccccCChhhhcccccceecccCcccCCCCCCcCccccC
Q 002278 435 GLLPAEFGNLRSIQTIDMSFNQLSGSIPAELGQLQNIISLILNNNNLQGGIPDQLSNCFS 494 (943)
Q Consensus 435 ~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 494 (943)
+..|..|..+++|+.|+|++|++.+. +++|+.|++..|+++|.+|..++.++.
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 195 SVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred ccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccCC
Confidence 77777778888888888888877754 346778888888888888887776654
No 333
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=99.91 E-value=2.4e-25 Score=259.74 Aligned_cols=185 Identities=16% Similarity=0.187 Sum_probs=146.6
Q ss_pred ccceEEeeeceEEEEEEEecCCceEEEEEecccCcc--------cHHHHHHHHHHHhcCCCCCcceeeeEEecCCcceEE
Q 002278 619 SEKYIVGYGASSTVYKCALKNSRPIAVKKLYNQYPH--------NLREFETELETIGSIRHRNIVSLHGYALSPYGNLLF 690 (943)
Q Consensus 619 ~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~--------~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~lv 690 (943)
...+.||+|+||+||+|.. .++.+|+|+....... ..+.+.+|++++++++||||+++..++...+..++|
T Consensus 339 ~~~~~LG~G~fg~Vy~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lV 417 (540)
T 3en9_A 339 IPEHLIGKGAEADIKRDSY-LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRIM 417 (540)
T ss_dssp ---------CCEEEEEEEC-SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEEE
T ss_pred CCCCEEeeCCCEEEEEEEE-CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEEE
Confidence 4456899999999999954 4778899987543211 134578999999999999999777777778888999
Q ss_pred EEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccCC
Q 002278 691 YDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIPT 770 (943)
Q Consensus 691 ~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~~ 770 (943)
|||+++|+|.+++.. +..++.|+++||+|||++ +|+||||||+|||++. .+||+|||+++....
T Consensus 418 mE~~~ggsL~~~l~~-----------~~~i~~qi~~aL~~LH~~---gIiHrDiKp~NILl~~--~~kL~DFGla~~~~~ 481 (540)
T 3en9_A 418 MSYINGKLAKDVIED-----------NLDIAYKIGEIVGKLHKN---DVIHNDLTTSNFIFDK--DLYIIDFGLGKISNL 481 (540)
T ss_dssp EECCCSEEHHHHSTT-----------CTHHHHHHHHHHHHHHHT---TEECTTCCTTSEEESS--SEEECCCTTCEECCC
T ss_pred EECCCCCCHHHHHHH-----------HHHHHHHHHHHHHHHHHC---cCccCCCCHHHEEECC--eEEEEECccCEECCC
Confidence 999999999999963 568999999999999999 9999999999999999 999999999998754
Q ss_pred CCCce------eeeEecccceeCcccccc--CCCCCcchhhhHHHHHHHHHhCCCCCC
Q 002278 771 AMPHA------STFVLGTIGYIDPEYAHT--SRLNEKSDVYSFGIVLLEILTGKKAVD 820 (943)
Q Consensus 771 ~~~~~------~~~~~gt~~y~aPE~~~~--~~~~~~~DvwSlGvil~elltG~~p~~ 820 (943)
..... .....||+.|||||++.. ..|+..+|+|+..+-..+-+.++.+|.
T Consensus 482 ~~~~~~~~~~~~~~~~GT~~y~APEv~~~~~~~Y~~~~d~ws~vl~~l~~v~~r~rY~ 539 (540)
T 3en9_A 482 DEDKAVDLIVFKKAVLSTHHEKFDEIWERFLEGYKSVYDRWEIILELMKDVERRARYV 539 (540)
T ss_dssp HHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTCSCCC
T ss_pred ccccccchhhhhhhhcCCCCcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccccC
Confidence 32211 124569999999999987 668888999999999888888777663
No 334
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.90 E-value=3.6e-25 Score=246.88 Aligned_cols=257 Identities=20% Similarity=0.209 Sum_probs=172.7
Q ss_pred EEcCCCCCccccCCCcCCCCCCCEEEeeCCcccccCC----CCccCCC-CCcEEeccCCCcCCccchhcccc-----ccc
Q 002278 43 LNLSSLNLGGEISPSIGDLRNLQSIDFQGNKLTGQIP----DEIGNCG-SLVHIELSDNSLYGDIPFSISKL-----KQL 112 (943)
Q Consensus 43 L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p----~~~~~l~-~L~~L~Ls~N~l~~~~p~~~~~l-----~~L 112 (943)
++|+.|++++.+|..+...++|++|||++|+|++..+ +.|..++ +|++|+|++|++++..+..|..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 6788888888888777777779999999998886655 6677888 89999999998887777777775 888
Q ss_pred eEEEecCcccccCCCcccC----CC-CCCcEEEEeccccccccchhccc-----cccceeccccCCccCCCCCccc----
Q 002278 113 EFLNLKNNQLTGPIPSTLT----QI-PNLKTLDLARNQLTGEIPRLIYW-----NEVLQYLGLRGNALTGMLSPDM---- 178 (943)
Q Consensus 113 ~~L~Ls~n~l~~~~~~~~~----~l-~~L~~L~Ls~N~l~~~~~~~~~~-----l~~L~~L~L~~n~l~~~~~~~~---- 178 (943)
++|+|++|++++..+..+. .+ ++|++|+|++|+|++..+..+.. .++|++|+|++|.+++.....+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 8888888888876665443 34 78888888888888666655443 2577777777777775433332
Q ss_pred cccc-ccceeeccceecccccCCCC----cCC-CcccEEEeecccccCcCCCCCCcceEeEEEecCccccccCCccccc-
Q 002278 179 CQLT-GLWYFDVRGNNLTGTIPDSI----GNC-TSFEILDISYNQITGEIPYNIGFLQVATLSLQGNKLTGKIPEVIGL- 251 (943)
Q Consensus 179 ~~l~-~L~~L~L~~N~i~~~~~~~l----~~l-~~L~~L~Ls~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~- 251 (943)
..++ +|++|+|++|++++..+..+ ..+ ++|++|+|++|+|++... ..++..+..
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~-------------------~~l~~~l~~~ 223 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSY-------------------AELAYIFSSI 223 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCH-------------------HHHHHHHHHS
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHH-------------------HHHHHHHhcC
Confidence 2333 66666666666665444322 233 466666666666552100 023444544
Q ss_pred cCCCcEEecCCCCCCCCCC----cccCCCCCcceEEecCCCCCCCC-------CCCcCCCCcCcEEEcccCccccccc
Q 002278 252 MQALAVLDLSENELVGPIP----PILGNLSYTGKLYLHGNKLTGPI-------PPELGNMSKLSYLQLQNNQLVGTIP 318 (943)
Q Consensus 252 l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~-------~~~~~~l~~L~~L~L~~N~l~~~~~ 318 (943)
.++|+.|+|++|.+.+..+ ..+..+++|+.|+|++|.+.+.. +..+..+++|+.||+++|++....+
T Consensus 224 ~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 224 PNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp CTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred CCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 3478888888888876544 33456677777777777754332 2345666777777777777765433
No 335
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=1.4e-23 Score=219.59 Aligned_cols=196 Identities=15% Similarity=0.216 Sum_probs=104.6
Q ss_pred cCcEEEcccCccccccccccCCcccceEEEccccc-cCCcCcccccCCCcCcEEEeeC-CcccCcccccccccCccceee
Q 002278 302 KLSYLQLQNNQLVGTIPAELGKLEQLFELNLADNN-LEGPIPHNISSCTALNQFNVHG-NRLSGAIPSSFRNLGSLTYLN 379 (943)
Q Consensus 302 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~ 379 (943)
+|++|++++|++++..+..|.++++|++|++++|+ ++++.+..|.++++|++|++++ |+++++.+..|.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 45555555555554444455555555555555554 5444444555555555555555 555544445555555555555
Q ss_pred ccCCcCCCCCCCCCCCCCCcc---EEecCCC-cCCCccCCCcccccccc-eeecccccccccCCccccCCCccceecccC
Q 002278 380 LSRNNFKGKVPTELGRIINLD---TLDLSVN-NFSGSVPASIGDLEHLL-TLNLSRNHLNGLLPAEFGNLRSIQTIDMSF 454 (943)
Q Consensus 380 L~~N~l~~~~~~~~~~l~~L~---~L~Ls~N-~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 454 (943)
+++|++++ +|. +..+.+|+ .|++++| .+++..+..|.++++|+ .|++++|+++.+.+..|.. ++|+.|+|++
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~ 188 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNK 188 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTT
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCC
Confidence 55555553 333 45555555 5666666 55544444555566666 6666666665333333433 5666666666
Q ss_pred cc-ccccCChhhhcc-cccceecccCcccCCCCCCcCccccCCcccccCCc
Q 002278 455 NQ-LSGSIPAELGQL-QNIISLILNNNNLQGGIPDQLSNCFSLSNLNVSYN 503 (943)
Q Consensus 455 N~-l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N 503 (943)
|+ +++..+..|..+ ++|+.|+|++|++++. |.. .+++|+.|+++++
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l-~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTAL-PSK--GLEHLKELIARNT 236 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCCCC-CCT--TCTTCSEEECTTC
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCccccC-Chh--HhccCceeeccCc
Confidence 63 654444555556 6666666666666533 322 3445555555544
No 336
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.90 E-value=1.9e-23 Score=218.56 Aligned_cols=206 Identities=18% Similarity=0.195 Sum_probs=137.1
Q ss_pred ccCCCcCCCCCCCEEEeeCCcccccCCCCccCCCCCcEEeccCCC-cCCccchhccccccceEEEecC-cccccCCCccc
Q 002278 53 EISPSIGDLRNLQSIDFQGNKLTGQIPDEIGNCGSLVHIELSDNS-LYGDIPFSISKLKQLEFLNLKN-NQLTGPIPSTL 130 (943)
Q Consensus 53 ~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~-n~l~~~~~~~~ 130 (943)
.+|. +. ++|++|+|++|+|++..+..|.++++|++|+|++|+ ++...+.+|+++++|++|+|++ |++++..+..|
T Consensus 25 ~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f 101 (239)
T 2xwt_C 25 RIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL 101 (239)
T ss_dssp SCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSE
T ss_pred ccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh
Confidence 5666 43 389999999999997777789999999999999997 8855566899999999999998 89987777888
Q ss_pred CCCCCCcEEEEeccccccccchhccccccceeccccCCccCCCCCcccccccccceeeccce-ecccccCCCCcCCCccc
Q 002278 131 TQIPNLKTLDLARNQLTGEIPRLIYWNEVLQYLGLRGNALTGMLSPDMCQLTGLWYFDVRGN-NLTGTIPDSIGNCTSFE 209 (943)
Q Consensus 131 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~l~~l~~L~ 209 (943)
..+++|++|+|++|++++ +|. |..+.+|+ .|++|++++| ++++..+..|.++++|+
T Consensus 102 ~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~---------------------~L~~L~l~~N~~l~~i~~~~~~~l~~L~ 158 (239)
T 2xwt_C 102 KELPLLKFLGIFNTGLKM-FPD-LTKVYSTD---------------------IFFILEITDNPYMTSIPVNAFQGLCNET 158 (239)
T ss_dssp ECCTTCCEEEEEEECCCS-CCC-CTTCCBCC---------------------SEEEEEEESCTTCCEECTTTTTTTBSSE
T ss_pred CCCCCCCEEeCCCCCCcc-ccc-cccccccc---------------------cccEEECCCCcchhhcCcccccchhcce
Confidence 999999999999998885 443 44444443 1225555555 55544455566666666
Q ss_pred -EEEeecccccCcCCCCCCcceEeEEEecCcc-ccccCCcccccc-CCCcEEecCCCCCCCCCCcccCCCCCcceEEecC
Q 002278 210 -ILDISYNQITGEIPYNIGFLQVATLSLQGNK-LTGKIPEVIGLM-QALAVLDLSENELVGPIPPILGNLSYTGKLYLHG 286 (943)
Q Consensus 210 -~L~Ls~N~l~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 286 (943)
+|++++|+++...+..+...+|+.|++++|+ ++...+..|..+ ++|+.|++++|++++..+. .+++|+.|++++
T Consensus 159 ~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~ 235 (239)
T 2xwt_C 159 LTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARN 235 (239)
T ss_dssp EEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTT
T ss_pred eEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccC
Confidence 6666666666322222333445555555552 554445555666 6666666666666643222 344455555544
Q ss_pred C
Q 002278 287 N 287 (943)
Q Consensus 287 n 287 (943)
+
T Consensus 236 ~ 236 (239)
T 2xwt_C 236 T 236 (239)
T ss_dssp C
T ss_pred c
Confidence 3
No 337
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=3.8e-23 Score=217.90 Aligned_cols=178 Identities=22% Similarity=0.291 Sum_probs=92.7
Q ss_pred cCcEEEcccCccccccccccCCcccceEEEccccccCCcCcccccCCCcCcEEEeeCCcccCcccccccccCccceeecc
Q 002278 302 KLSYLQLQNNQLVGTIPAELGKLEQLFELNLADNNLEGPIPHNISSCTALNQFNVHGNRLSGAIPSSFRNLGSLTYLNLS 381 (943)
Q Consensus 302 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 381 (943)
..+.++++++.++ .+|..+. ++|+.|+|++|++++..+..|..+++|++|+|++|+|++..+..|..+++|++|+|+
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 3556666666665 3444333 355666666666665555555555555555555555555555555555555555555
Q ss_pred CCcCCCCCCCCCCCCCCccEEecCCCcCCCccCCCcccccccceeecccccccccCCccccCCCccceecccCccccccC
Q 002278 382 RNNFKGKVPTELGRIINLDTLDLSVNNFSGSVPASIGDLEHLLTLNLSRNHLNGLLPAEFGNLRSIQTIDMSFNQLSGSI 461 (943)
Q Consensus 382 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 461 (943)
+|++++..+..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|+|++..
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 55555444444555555555555555555444444444555555555555555444444444555555555555554433
Q ss_pred ChhhhcccccceecccCcccC
Q 002278 462 PAELGQLQNIISLILNNNNLQ 482 (943)
Q Consensus 462 p~~~~~l~~L~~L~L~~N~l~ 482 (943)
+..|..+++|+.|+|++|+++
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBC
T ss_pred HHHHhCCCCCCEEEeeCCcee
Confidence 334444444444444444444
No 338
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=2.1e-25 Score=246.52 Aligned_cols=270 Identities=20% Similarity=0.217 Sum_probs=170.4
Q ss_pred CCCCCcceeEecCCCCcEEEEEcCCCCCccccCCCcCCC--CCCCEEEeeCCcccccCCCCccCCCCCcEEeccCCCcCC
Q 002278 23 SDFCSWRGVFCDNSSLSVVSLNLSSLNLGGEISPSIGDL--RNLQSIDFQGNKLTGQIPDEIGNCGSLVHIELSDNSLYG 100 (943)
Q Consensus 23 ~~~c~w~gv~c~~~~~~v~~L~l~~~~~~~~~~~~l~~l--~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 100 (943)
..|.+|+++.|+.. .++.+|++++++.+ ..+..+ ++++.|++++|.+++..+. +..+++|++|+|++|.+++
T Consensus 34 ~vc~~W~~~~~~~~--~~~~l~l~~~~~~~---~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~ 107 (336)
T 2ast_B 34 GVCKRWYRLASDES--LWQTLDLTGKNLHP---DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEV 107 (336)
T ss_dssp SSCHHHHHHHTCST--TSSEEECTTCBCCH---HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECH
T ss_pred HHHHHHHHHhcCch--hheeeccccccCCH---HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCH
Confidence 46668999988643 46689999988873 446666 7899999999999976655 5678999999999999886
Q ss_pred c-cchhccccccceEEEecCcccccCCCcccCCCCCCcEEEEecc-cccc-ccchhccccccceeccccCC-ccCCCCCc
Q 002278 101 D-IPFSISKLKQLEFLNLKNNQLTGPIPSTLTQIPNLKTLDLARN-QLTG-EIPRLIYWNEVLQYLGLRGN-ALTGMLSP 176 (943)
Q Consensus 101 ~-~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~-~~~~~~~~l~~L~~L~L~~n-~l~~~~~~ 176 (943)
. +|..+..+++|++|+|++|.+++..+..+..+++|++|+|++| .+++ .++..+..+++|++|++++| .+++..
T Consensus 108 ~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~-- 185 (336)
T 2ast_B 108 STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKH-- 185 (336)
T ss_dssp HHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHH--
T ss_pred HHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHH--
Confidence 5 7788889999999999999988888888889999999999999 6764 25666666777777777776 665320
Q ss_pred ccccccccceeeccceecccccCCCCcCCC-cccEEEeeccc--ccCcCCCCCCcceEeEEEecCccccccCCccccccC
Q 002278 177 DMCQLTGLWYFDVRGNNLTGTIPDSIGNCT-SFEILDISYNQ--ITGEIPYNIGFLQVATLSLQGNKLTGKIPEVIGLMQ 253 (943)
Q Consensus 177 ~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~-~L~~L~Ls~N~--l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~ 253 (943)
++..+..++ +|++|++++|. ++. +.++..+..++
T Consensus 186 ---------------------~~~~~~~l~~~L~~L~l~~~~~~~~~----------------------~~l~~~~~~~~ 222 (336)
T 2ast_B 186 ---------------------VQVAVAHVSETITQLNLSGYRKNLQK----------------------SDLSTLVRRCP 222 (336)
T ss_dssp ---------------------HHHHHHHSCTTCCEEECCSCGGGSCH----------------------HHHHHHHHHCT
T ss_pred ---------------------HHHHHHhcccCCCEEEeCCCcccCCH----------------------HHHHHHHhhCC
Confidence 222334444 55555555542 210 01223333444
Q ss_pred CCcEEecCCCC-CCCCCCcccCCCCCcceEEecCCC-CCCCCCCCcCCCCcCcEEEcccCccccccccccCCc-ccceEE
Q 002278 254 ALAVLDLSENE-LVGPIPPILGNLSYTGKLYLHGNK-LTGPIPPELGNMSKLSYLQLQNNQLVGTIPAELGKL-EQLFEL 330 (943)
Q Consensus 254 ~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L 330 (943)
+|+.|++++|. +++..+..+..+++|+.|++++|. ++......+..+++|+.|++++| ++ ...+..+ .+|..|
T Consensus 223 ~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~---~~~~~~l~~~l~~L 298 (336)
T 2ast_B 223 NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP---DGTLQLLKEALPHL 298 (336)
T ss_dssp TCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC---TTCHHHHHHHSTTS
T ss_pred CCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC---HHHHHHHHhhCcce
Confidence 44444444444 333334444444555555555553 11111113455566666666666 22 1223333 235555
Q ss_pred EccccccCCcCcccccC
Q 002278 331 NLADNNLEGPIPHNISS 347 (943)
Q Consensus 331 ~L~~N~l~~~~p~~~~~ 347 (943)
++++|++++..|..+..
T Consensus 299 ~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 299 QINCSHFTTIARPTIGN 315 (336)
T ss_dssp EESCCCSCCTTCSSCSS
T ss_pred EEecccCccccCCcccc
Confidence 56666666666655543
No 339
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=3.5e-25 Score=247.01 Aligned_cols=176 Identities=22% Similarity=0.233 Sum_probs=76.4
Q ss_pred EEeecccccCcCCCCCCcce-EeEEEecCccccccCC----ccccccC-CCcEEecCCCCCCCCCCcccCCC-----CCc
Q 002278 211 LDISYNQITGEIPYNIGFLQ-VATLSLQGNKLTGKIP----EVIGLMQ-ALAVLDLSENELVGPIPPILGNL-----SYT 279 (943)
Q Consensus 211 L~Ls~N~l~~~~~~~~~~~~-L~~L~L~~n~l~~~~~----~~l~~l~-~L~~L~Ls~N~l~~~~~~~~~~l-----~~L 279 (943)
+++++|.+++.+|......+ |++|+|++|.+++..+ +.+..++ +|++|+|++|.+.+..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 44555555554444443333 5555555555544433 4444444 45555555555544444434332 445
Q ss_pred ceEEecCCCCCCCCCCCcCC----C-CcCcEEEcccCccccccccccCC-----cccceEEEccccccCCcCc----ccc
Q 002278 280 GKLYLHGNKLTGPIPPELGN----M-SKLSYLQLQNNQLVGTIPAELGK-----LEQLFELNLADNNLEGPIP----HNI 345 (943)
Q Consensus 280 ~~L~L~~n~l~~~~~~~~~~----l-~~L~~L~L~~N~l~~~~~~~~~~-----l~~L~~L~L~~N~l~~~~p----~~~ 345 (943)
++|+|++|.+++..+..+.. + ++|++|+|++|++++..+..+.. .++|++|+|++|+++...+ ..+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 55555555544433332222 2 44555555555544333322221 1344555555554443222 122
Q ss_pred cCCC-cCcEEEeeCCcccCcccccccc----c-CccceeeccCCcCC
Q 002278 346 SSCT-ALNQFNVHGNRLSGAIPSSFRN----L-GSLTYLNLSRNNFK 386 (943)
Q Consensus 346 ~~l~-~L~~L~L~~N~l~~~~~~~~~~----l-~~L~~L~L~~N~l~ 386 (943)
..++ +|++|+|++|+|++..+..+.. + ++|+.|+|++|.++
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~ 209 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG 209 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence 2232 4444444444444333332222 1 34444444444444
No 340
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=2e-23 Score=227.44 Aligned_cols=200 Identities=20% Similarity=0.226 Sum_probs=106.0
Q ss_pred cCCCcEEecCCCCCCCCCCccc--CCCCCcceEEecCCCCCCCCC----CCcCCCCcCcEEEcccCccccccccccCCcc
Q 002278 252 MQALAVLDLSENELVGPIPPIL--GNLSYTGKLYLHGNKLTGPIP----PELGNMSKLSYLQLQNNQLVGTIPAELGKLE 325 (943)
Q Consensus 252 l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 325 (943)
+++|++|++++|.+.+..|..+ ..+++|++|+|++|.+++..+ ..+..+++|++|+|++|++.+..+..|..++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 4557777777777776666665 666777777777777665433 2234566666666666666655556666666
Q ss_pred cceEEEccccccCCc--C--cccccCCCcCcEEEeeCCcccCcccc----cccccCccceeeccCCcCCCCCCCCCCCC-
Q 002278 326 QLFELNLADNNLEGP--I--PHNISSCTALNQFNVHGNRLSGAIPS----SFRNLGSLTYLNLSRNNFKGKVPTELGRI- 396 (943)
Q Consensus 326 ~L~~L~L~~N~l~~~--~--p~~~~~l~~L~~L~L~~N~l~~~~~~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~l- 396 (943)
+|++|+|++|++.+. + +..+..+++|++|+|++|+++. ++. .+..+++|++|+|++|++++..|..+..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 248 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM 248 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence 666666666665431 1 1223455556666666665542 121 23445555555555555554444444443
Q ss_pred --CCccEEecCCCcCCCccCCCcccccccceeecccccccccCCccccCCCccceecccCccc
Q 002278 397 --INLDTLDLSVNNFSGSVPASIGDLEHLLTLNLSRNHLNGLLPAEFGNLRSIQTIDMSFNQL 457 (943)
Q Consensus 397 --~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 457 (943)
++|+.|+|++|+|+ .+|..+. ++|+.|+|++|+|++. |. +..+++|+.|+|++|+|
T Consensus 249 ~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 249 WSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPF 306 (310)
T ss_dssp CCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTT
T ss_pred CcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCC
Confidence 34445555555444 3333332 3444444444444432 11 33344444444444444
No 341
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.89 E-value=1.9e-23 Score=227.62 Aligned_cols=199 Identities=19% Similarity=0.193 Sum_probs=115.3
Q ss_pred CcEEEcccCcccccccccc--CCcccceEEEccccccCCcCc----ccccCCCcCcEEEeeCCcccCcccccccccCccc
Q 002278 303 LSYLQLQNNQLVGTIPAEL--GKLEQLFELNLADNNLEGPIP----HNISSCTALNQFNVHGNRLSGAIPSSFRNLGSLT 376 (943)
Q Consensus 303 L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~p----~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 376 (943)
|++|++++|.+.+..|..+ ..+++|++|+|++|++++..+ ..+..+++|++|+|++|++.+..+..|..+++|+
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 172 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALT 172 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCC
T ss_pred eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCC
Confidence 4444444444444444443 444444444444444443222 2233455555555555555555555555566666
Q ss_pred eeeccCCcCCCC----CCCCCCCCCCccEEecCCCcCCCccCC----CcccccccceeecccccccccCCccccCC---C
Q 002278 377 YLNLSRNNFKGK----VPTELGRIINLDTLDLSVNNFSGSVPA----SIGDLEHLLTLNLSRNHLNGLLPAEFGNL---R 445 (943)
Q Consensus 377 ~L~L~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l---~ 445 (943)
+|+|++|++.+. .+..+..+++|++|+|++|+++. ++. .+..+++|++|+|++|++++..|..+..+ +
T Consensus 173 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~ 251 (310)
T 4glp_A 173 SLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSS 251 (310)
T ss_dssp EEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCT
T ss_pred EEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcC
Confidence 666666655421 12223556666666666666652 222 24566777777777777776666666665 5
Q ss_pred ccceecccCccccccCChhhhcccccceecccCcccCCCCCCcCccccCCcccccCCccccc
Q 002278 446 SIQTIDMSFNQLSGSIPAELGQLQNIISLILNNNNLQGGIPDQLSNCFSLSNLNVSYNNLSG 507 (943)
Q Consensus 446 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~ 507 (943)
+|++|+|++|+|+ .+|..+. ++|+.|+|++|+|++. |. +..+++|+.|+|++|+|+.
T Consensus 252 ~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 252 ALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp TCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred cCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 7777777777777 5666553 6777777777777743 33 5667777777777777753
No 342
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.89 E-value=1.2e-22 Score=225.40 Aligned_cols=244 Identities=22% Similarity=0.179 Sum_probs=159.2
Q ss_pred CCcceeEecCCCCcEEEEEcCCCCCccccCCCcCCCCCCCEEEeeCCcccccCCCCccCCCCCcEEeccCCCcCCccc-h
Q 002278 26 CSWRGVFCDNSSLSVVSLNLSSLNLGGEISPSIGDLRNLQSIDFQGNKLTGQIPDEIGNCGSLVHIELSDNSLYGDIP-F 104 (943)
Q Consensus 26 c~w~gv~c~~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p-~ 104 (943)
|+|+.|.|++ ++++ .+|..+ .+++++|+|++|+|+...+++|.++++|++|+|++|++.+.+| .
T Consensus 9 C~~~~v~C~~------------~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~ 73 (350)
T 4ay9_X 9 CSNRVFLCQE------------SKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD 73 (350)
T ss_dssp EETTEEEEES------------TTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTT
T ss_pred eeCCEEEecC------------CCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChh
Confidence 6788888864 4455 677766 3689999999999995555679999999999999999876665 4
Q ss_pred hccccccceE-EEecCcccccCCCcccCCCCCCcEEEEeccccccccchhccccccceeccccCCccCCCCCcccccccc
Q 002278 105 SISKLKQLEF-LNLKNNQLTGPIPSTLTQIPNLKTLDLARNQLTGEIPRLIYWNEVLQYLGLRGNALTGMLSPDMCQLTG 183 (943)
Q Consensus 105 ~~~~l~~L~~-L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 183 (943)
+|.++++|++ +.+++|+++...|..|..+++|++|++++|+|+...+..+....++..|++.+
T Consensus 74 ~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~---------------- 137 (350)
T 4ay9_X 74 VFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQD---------------- 137 (350)
T ss_dssp SBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEES----------------
T ss_pred HhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcc----------------
Confidence 6888888765 66677889888888899999999999999988865554444444444444432
Q ss_pred cceeeccceecccccCCCCcCCC-cccEEEeecccccCcCCCCCCcceEeEEEecC-ccccccCCccccccCCCcEEecC
Q 002278 184 LWYFDVRGNNLTGTIPDSIGNCT-SFEILDISYNQITGEIPYNIGFLQVATLSLQG-NKLTGKIPEVIGLMQALAVLDLS 261 (943)
Q Consensus 184 L~~L~L~~N~i~~~~~~~l~~l~-~L~~L~Ls~N~l~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~l~~l~~L~~L~Ls 261 (943)
.|++....+..|..+. .+++|+|++|+|+...+..+...+++.|++.+ |.++.+.++.|..+++|++|||+
T Consensus 138 -------~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs 210 (350)
T 4ay9_X 138 -------NINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDIS 210 (350)
T ss_dssp -------CTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECT
T ss_pred -------ccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcC
Confidence 1334433344455543 46677777777765444555555666666653 45554445566777777777777
Q ss_pred CCCCCCCCCcccCCCCCcceEEecCCCCCCCCCCCcCCCCcCcEEEcccC
Q 002278 262 ENELVGPIPPILGNLSYTGKLYLHGNKLTGPIPPELGNMSKLSYLQLQNN 311 (943)
Q Consensus 262 ~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 311 (943)
+|+|+...+..|.++.+|+.+++ +.++ .+| .+..+++|+.+++.++
T Consensus 211 ~N~l~~lp~~~~~~L~~L~~l~~--~~l~-~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 211 RTRIHSLPSYGLENLKKLRARST--YNLK-KLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp TSCCCCCCSSSCTTCCEEECTTC--TTCC-CCC-CTTTCCSCCEEECSCH
T ss_pred CCCcCccChhhhccchHhhhccC--CCcC-cCC-CchhCcChhhCcCCCC
Confidence 77777554444444333332222 2222 333 3555556666665543
No 343
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.88 E-value=2e-22 Score=223.54 Aligned_cols=240 Identities=18% Similarity=0.152 Sum_probs=132.4
Q ss_pred cEEecCCCCCCCCCCcccCCCCCcceEEecCCCCCCCCCCCcCCCCcCcEEEcccCccccccc-cccCCcccceE-EEcc
Q 002278 256 AVLDLSENELVGPIPPILGNLSYTGKLYLHGNKLTGPIPPELGNMSKLSYLQLQNNQLVGTIP-AELGKLEQLFE-LNLA 333 (943)
Q Consensus 256 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~-L~L~ 333 (943)
++++.++++++ .+|..+ .+++++|+|++|+|+.+.+..|.++++|++|+|++|++.+.+| .+|.++++|.+ +.++
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 34555555555 334333 2355666666666665444556666666666666666544333 34556655443 4445
Q ss_pred ccccCCcCcccccCCCcCcEEEeeCCcccCcccccccccCccceeeccC-CcCCCCCCCCCCCCC-CccEEecCCCcCCC
Q 002278 334 DNNLEGPIPHNISSCTALNQFNVHGNRLSGAIPSSFRNLGSLTYLNLSR-NNFKGKVPTELGRII-NLDTLDLSVNNFSG 411 (943)
Q Consensus 334 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~ 411 (943)
.|+|+.+.|..|..+++|++|++++|+|++..+..+....++..|++.+ |++....+..|..+. .++.|+|++|+|+.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 5666655566666666666666666666655555555555566666643 445544444455443 45666666666663
Q ss_pred ccCCCcccccccceeeccc-ccccccCCccccCCCccceecccCccccccCChhhhcccccceecccCcccCCCCCCcCc
Q 002278 412 SVPASIGDLEHLLTLNLSR-NHLNGLLPAEFGNLRSIQTIDMSFNQLSGSIPAELGQLQNIISLILNNNNLQGGIPDQLS 490 (943)
Q Consensus 412 ~~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 490 (943)
+|.......+|+.|++++ |.++.+.+..|.++++|++|||++|+|+...+..|.+|++|+.+++ ++++ .+| .+.
T Consensus 169 -i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~--~~l~-~lP-~l~ 243 (350)
T 4ay9_X 169 -IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLK-KLP-TLE 243 (350)
T ss_dssp -ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTC--TTCC-CCC-CTT
T ss_pred -CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhccC--CCcC-cCC-Cch
Confidence 343333445666666653 5555444455666666666666666666333334444444444333 2333 444 255
Q ss_pred cccCCcccccCCc
Q 002278 491 NCFSLSNLNVSYN 503 (943)
Q Consensus 491 ~l~~L~~L~ls~N 503 (943)
++++|+.++++++
T Consensus 244 ~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 244 KLVALMEASLTYP 256 (350)
T ss_dssp TCCSCCEEECSCH
T ss_pred hCcChhhCcCCCC
Confidence 6666666666654
No 344
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.88 E-value=6.7e-23 Score=222.80 Aligned_cols=194 Identities=24% Similarity=0.404 Sum_probs=97.8
Q ss_pred CCCCCcceEEecCCCCCCCCCCCcCCCCcCcEEEcccCccccccccccCCcccceEEEccccccCCcCcccccCCCcCcE
Q 002278 274 GNLSYTGKLYLHGNKLTGPIPPELGNMSKLSYLQLQNNQLVGTIPAELGKLEQLFELNLADNNLEGPIPHNISSCTALNQ 353 (943)
Q Consensus 274 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 353 (943)
..+++|++|++++|.++. ++ .+..+++|++|++++|++++..+ +..+++|++|+|++|++++. ..+..+++|+.
T Consensus 38 ~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~ 111 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKT 111 (308)
T ss_dssp HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred HHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCE
Confidence 345556666666666553 22 45555666666666666553332 55555555555555555532 23445555555
Q ss_pred EEeeCCcccCcccccccccCccceeeccCCcCCCCCCCCCCCCCCccEEecCCCcCCCccCCCcccccccceeecccccc
Q 002278 354 FNVHGNRLSGAIPSSFRNLGSLTYLNLSRNNFKGKVPTELGRIINLDTLDLSVNNFSGSVPASIGDLEHLLTLNLSRNHL 433 (943)
Q Consensus 354 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 433 (943)
|++++|++++.. .+..+++ |+.|++++|.+++..+ +..+++|+.|+|++|++
T Consensus 112 L~l~~n~l~~~~--~l~~l~~------------------------L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l 163 (308)
T 1h6u_A 112 LDLTSTQITDVT--PLAGLSN------------------------LQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQV 163 (308)
T ss_dssp EECTTSCCCCCG--GGTTCTT------------------------CCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred EECCCCCCCCch--hhcCCCC------------------------CCEEECCCCccCcCcc--ccCCCCccEEEccCCcC
Confidence 555555554321 1444444 4455555554443222 44455555555555555
Q ss_pred cccCCccccCCCccceecccCccccccCChhhhcccccceecccCcccCCCCCCcCccccCCcccccCCccccc
Q 002278 434 NGLLPAEFGNLRSIQTIDMSFNQLSGSIPAELGQLQNIISLILNNNNLQGGIPDQLSNCFSLSNLNVSYNNLSG 507 (943)
Q Consensus 434 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~ 507 (943)
++..+ +..+++|+.|+|++|++++. +. +..+++|+.|+|++|++++..| +..+++|+.|++++|++++
T Consensus 164 ~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 164 SDLTP--LANLSKLTTLKADDNKISDI-SP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCGG--GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred CCChh--hcCCCCCCEEECCCCccCcC-hh-hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 43222 45555555555555555432 22 4555555555555555553332 4555555555555555554
No 345
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=1.9e-25 Score=251.79 Aligned_cols=249 Identities=17% Similarity=0.183 Sum_probs=143.0
Q ss_pred cCCccccccCCCcEEecCCCCCCCCCC----cccCCCCCcceEEecCCCCC---CCCCCCcCCCCcCcEEEcccCccccc
Q 002278 244 KIPEVIGLMQALAVLDLSENELVGPIP----PILGNLSYTGKLYLHGNKLT---GPIPPELGNMSKLSYLQLQNNQLVGT 316 (943)
Q Consensus 244 ~~~~~l~~l~~L~~L~Ls~N~l~~~~~----~~~~~l~~L~~L~L~~n~l~---~~~~~~~~~l~~L~~L~L~~N~l~~~ 316 (943)
.++..+..+++|+.|+|++|.+.+..+ ..|..+++|+.|+|++|.+. +.+|..+. .
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~-----------------~ 85 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALR-----------------L 85 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHH-----------------H
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHH-----------------H
Confidence 345566666777777777776664322 22445555555555554322 22222220 0
Q ss_pred cccccCCcccceEEEccccccCC----cCcccccCCCcCcEEEeeCCcccCcccccc----ccc---------Cccceee
Q 002278 317 IPAELGKLEQLFELNLADNNLEG----PIPHNISSCTALNQFNVHGNRLSGAIPSSF----RNL---------GSLTYLN 379 (943)
Q Consensus 317 ~~~~~~~l~~L~~L~L~~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~----~~l---------~~L~~L~ 379 (943)
+...+..+++|++|+|++|.+.. .+|..+..+++|++|+|++|.|+...+..+ ..+ ++|++|+
T Consensus 86 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~ 165 (386)
T 2ca6_A 86 LLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSII 165 (386)
T ss_dssp HHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEE
T ss_pred HHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEE
Confidence 00112445555555555555554 244455555555556665555543322222 222 5666666
Q ss_pred ccCCcCC-CCCC---CCCCCCCCccEEecCCCcCC--C---ccCCCcccccccceeeccccccc----ccCCccccCCCc
Q 002278 380 LSRNNFK-GKVP---TELGRIINLDTLDLSVNNFS--G---SVPASIGDLEHLLTLNLSRNHLN----GLLPAEFGNLRS 446 (943)
Q Consensus 380 L~~N~l~-~~~~---~~~~~l~~L~~L~Ls~N~l~--~---~~~~~~~~l~~L~~L~Ls~N~l~----~~~p~~~~~l~~ 446 (943)
|++|+++ +.++ ..+..+++|+.|+|++|.|+ + ..|..+..+++|+.|+|++|.++ +.+|..+..+++
T Consensus 166 L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~ 245 (386)
T 2ca6_A 166 CGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPN 245 (386)
T ss_dssp CCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTT
T ss_pred CCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCC
Confidence 6666665 2222 24445566777777777665 2 34446667777777777777775 456666777777
Q ss_pred cceecccCcccccc----CChhhhc--ccccceecccCcccCC----CCCCcC-ccccCCcccccCCccccccC
Q 002278 447 IQTIDMSFNQLSGS----IPAELGQ--LQNIISLILNNNNLQG----GIPDQL-SNCFSLSNLNVSYNNLSGII 509 (943)
Q Consensus 447 L~~L~Ls~N~l~~~----~p~~~~~--l~~L~~L~L~~N~l~~----~~p~~~-~~l~~L~~L~ls~N~l~~~~ 509 (943)
|+.|+|++|+|++. +|..+.. +++|+.|+|++|++++ .+|..+ .++++|+.|++++|++++..
T Consensus 246 L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 246 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred cCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 77777777777654 4555533 7777777777777775 366665 45777888888877776553
No 346
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=5.2e-25 Score=248.20 Aligned_cols=247 Identities=21% Similarity=0.269 Sum_probs=156.1
Q ss_pred cceEeEEEecCccccccCC----ccccccCCCcEEecCCCCCC---CCCCccc-------CCCCCcceEEecCCCCCC--
Q 002278 228 FLQVATLSLQGNKLTGKIP----EVIGLMQALAVLDLSENELV---GPIPPIL-------GNLSYTGKLYLHGNKLTG-- 291 (943)
Q Consensus 228 ~~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~Ls~N~l~---~~~~~~~-------~~l~~L~~L~L~~n~l~~-- 291 (943)
..+|+.|+|++|.+....+ ..+..+++|++|+|++|.+. +.+|..+ ..+++|++|+|++|.++.
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 110 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA 110 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence 4579999999999987644 44778999999999997554 3445444 566667777777776665
Q ss_pred --CCCCCcCCCCcCcEEEcccCccccccccccCCc-ccceEEEccccccCCcCcccccCCCcCcEEEeeCCccc-Cccc-
Q 002278 292 --PIPPELGNMSKLSYLQLQNNQLVGTIPAELGKL-EQLFELNLADNNLEGPIPHNISSCTALNQFNVHGNRLS-GAIP- 366 (943)
Q Consensus 292 --~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~-~~~~- 366 (943)
.+|..+..+++|++|+|++|.++...+..+... ..+ ..|++.+ ..++|++|++++|+++ +.++
T Consensus 111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l-----~~~~~~~-------~~~~L~~L~L~~n~l~~~~~~~ 178 (386)
T 2ca6_A 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQEL-----AVNKKAK-------NAPPLRSIICGRNRLENGSMKE 178 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHH-----HHHHHHH-------TCCCCCEEECCSSCCTGGGHHH
T ss_pred HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHH-----hhhhhcc-------cCCCCcEEECCCCCCCcHHHHH
Confidence 244455566666666666666653333322221 000 0000000 0045555555555554 2222
Q ss_pred --ccccccCccceeeccCCcCCC-----CCCCCCCCCCCccEEecCCCcCC----CccCCCcccccccceeecccccccc
Q 002278 367 --SSFRNLGSLTYLNLSRNNFKG-----KVPTELGRIINLDTLDLSVNNFS----GSVPASIGDLEHLLTLNLSRNHLNG 435 (943)
Q Consensus 367 --~~~~~l~~L~~L~L~~N~l~~-----~~~~~~~~l~~L~~L~Ls~N~l~----~~~~~~~~~l~~L~~L~Ls~N~l~~ 435 (943)
..+..+++|+.|+|++|+++. ..+..+..+++|+.|+|++|.++ +.+|..+..+++|+.|+|++|++++
T Consensus 179 l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~ 258 (386)
T 2ca6_A 179 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSA 258 (386)
T ss_dssp HHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCH
T ss_pred HHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCch
Confidence 345556666666666666651 23335666677777777777774 3566677777788888888888775
Q ss_pred c----CCccc--cCCCccceecccCccccc----cCChhh-hcccccceecccCcccCCCCC
Q 002278 436 L----LPAEF--GNLRSIQTIDMSFNQLSG----SIPAEL-GQLQNIISLILNNNNLQGGIP 486 (943)
Q Consensus 436 ~----~p~~~--~~l~~L~~L~Ls~N~l~~----~~p~~~-~~l~~L~~L~L~~N~l~~~~p 486 (943)
. ++..+ +.+++|+.|+|++|++++ .+|..+ .++++|+.|+|++|++++..|
T Consensus 259 ~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 259 RGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp HHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred hhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 4 45555 347888888888888886 477776 667888888888888886553
No 347
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=2.8e-24 Score=237.42 Aligned_cols=249 Identities=21% Similarity=0.284 Sum_probs=168.3
Q ss_pred CcEEecCCCCCCCCCCcccCCC--CCcceEEecCCCCCCCCCCCcCCCCcCcEEEcccCccccc-cccccCCcccceEEE
Q 002278 255 LAVLDLSENELVGPIPPILGNL--SYTGKLYLHGNKLTGPIPPELGNMSKLSYLQLQNNQLVGT-IPAELGKLEQLFELN 331 (943)
Q Consensus 255 L~~L~Ls~N~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~ 331 (943)
++.+++++|.+. +..+..+ ++++.|++++|.+++..+. +..+++|++|++++|.+++. ++..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 445555555443 3334444 5555566666665544433 44567777777777776644 566667777777777
Q ss_pred ccccccCCcCcccccCCCcCcEEEeeCC-cccC-cccccccccCccceeeccCC-cCCCC-CCCCCCCCC-CccEEecCC
Q 002278 332 LADNNLEGPIPHNISSCTALNQFNVHGN-RLSG-AIPSSFRNLGSLTYLNLSRN-NFKGK-VPTELGRII-NLDTLDLSV 406 (943)
Q Consensus 332 L~~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~-~~~~~~~~l~~L~~L~L~~N-~l~~~-~~~~~~~l~-~L~~L~Ls~ 406 (943)
|++|.+++..+..+..+++|++|++++| .+++ .++..+..+++|++|++++| .+++. ++..+..++ +|+.|++++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 7777777666667777777777777777 5654 25555677777777777777 77643 455566677 788888888
Q ss_pred C--cCC-CccCCCcccccccceeeccccc-ccccCCccccCCCccceecccCcc-ccccCChhhhcccccceecccCccc
Q 002278 407 N--NFS-GSVPASIGDLEHLLTLNLSRNH-LNGLLPAEFGNLRSIQTIDMSFNQ-LSGSIPAELGQLQNIISLILNNNNL 481 (943)
Q Consensus 407 N--~l~-~~~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~N~l 481 (943)
| .++ +.+|..+..+++|+.|+|++|. +++..+..+..+++|++|++++|. ++......+..+++|+.|++++| +
T Consensus 205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i 283 (336)
T 2ast_B 205 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-V 283 (336)
T ss_dssp CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-S
T ss_pred CcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-c
Confidence 7 444 3456667778888888888888 666777788888888888888885 32222235788888999999888 3
Q ss_pred CCCCCCcCccc-cCCcccccCCccccccCCC
Q 002278 482 QGGIPDQLSNC-FSLSNLNVSYNNLSGIIPP 511 (943)
Q Consensus 482 ~~~~p~~~~~l-~~L~~L~ls~N~l~~~~~~ 511 (943)
+ ...+..+ ..|..|++++|++++..|.
T Consensus 284 ~---~~~~~~l~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 284 P---DGTLQLLKEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp C---TTCHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred C---HHHHHHHHhhCcceEEecccCccccCC
Confidence 3 2234444 3478888999999988775
No 348
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=5.4e-22 Score=215.65 Aligned_cols=194 Identities=20% Similarity=0.338 Sum_probs=145.8
Q ss_pred ccccCCCcEEecCCCCCCCCCCcccCCCCCcceEEecCCCCCCCCCCCcCCCCcCcEEEcccCccccccccccCCcccce
Q 002278 249 IGLMQALAVLDLSENELVGPIPPILGNLSYTGKLYLHGNKLTGPIPPELGNMSKLSYLQLQNNQLVGTIPAELGKLEQLF 328 (943)
Q Consensus 249 l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 328 (943)
+..+++|+.|++++|.+.. ++ .+..+++|+.|+|++|.+++..+ +..+++|++|++++|++++. ..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence 3457788888888888875 33 57778888888888888886544 88888888999998888753 3688888999
Q ss_pred EEEccccccCCcCcccccCCCcCcEEEeeCCcccCcccccccccCccceeeccCCcCCCCCCCCCCCCCCccEEecCCCc
Q 002278 329 ELNLADNNLEGPIPHNISSCTALNQFNVHGNRLSGAIPSSFRNLGSLTYLNLSRNNFKGKVPTELGRIINLDTLDLSVNN 408 (943)
Q Consensus 329 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 408 (943)
+|+|++|++++.. .+..+++|+.|++++|++++..+ +..+++|+.|+|++|++++..+ +..+++|+.|++++|.
T Consensus 111 ~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 111 TLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNK 184 (308)
T ss_dssp EEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCc
Confidence 9999999988643 38888999999999999886544 7788888888888888875333 7777777777777777
Q ss_pred CCCccCCCcccccccceeecccccccccCCccccCCCccceecccCcccc
Q 002278 409 FSGSVPASIGDLEHLLTLNLSRNHLNGLLPAEFGNLRSIQTIDMSFNQLS 458 (943)
Q Consensus 409 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 458 (943)
+++..+ +..+++|+.|+|++|++++.. .+..+++|+.|+|++|+++
T Consensus 185 l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 185 ISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred cCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 775433 666777777777777776543 2666667777777777666
No 349
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=99.87 E-value=1.6e-22 Score=216.12 Aligned_cols=152 Identities=16% Similarity=0.164 Sum_probs=122.2
Q ss_pred HHHHHhhccccceEEeeeceEEEEEEEecCCceEEEEEecccCc------------------ccHHHHHHHHHHHhcCCC
Q 002278 610 DIMRSTENLSEKYIVGYGASSTVYKCALKNSRPIAVKKLYNQYP------------------HNLREFETELETIGSIRH 671 (943)
Q Consensus 610 ~~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~------------------~~~~~~~~E~~~l~~l~h 671 (943)
.+......|...+.||+|+||.||+|.+.+++.||+|.+..... .....+.+|++++++++
T Consensus 84 ~~~~~~~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~- 162 (282)
T 1zar_A 84 RLVRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQ- 162 (282)
T ss_dssp HHHHTTSCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHhCCeEEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhcc-
Confidence 34445566777899999999999999997789999999864321 12456889999999999
Q ss_pred CCcceeeeEEecCCcceEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEE
Q 002278 672 RNIVSLHGYALSPYGNLLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILI 751 (943)
Q Consensus 672 ~niv~l~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill 751 (943)
| +++.+++.. +..++||||++||+|.+ +.. .....++.|++.||+|||+. +|+||||||+|||+
T Consensus 163 -~-~~v~~~~~~-~~~~lvmE~~~g~~L~~-l~~---------~~~~~i~~qi~~~l~~lH~~---giiHrDlkp~NILl 226 (282)
T 1zar_A 163 -G-LAVPKVYAW-EGNAVLMELIDAKELYR-VRV---------ENPDEVLDMILEEVAKFYHR---GIVHGDLSQYNVLV 226 (282)
T ss_dssp -T-SSSCCEEEE-ETTEEEEECCCCEEGGG-CCC---------SCHHHHHHHHHHHHHHHHHT---TEECSCCSTTSEEE
T ss_pred -C-CCcCeEEec-cceEEEEEecCCCcHHH-cch---------hhHHHHHHHHHHHHHHHHHC---CCEeCCCCHHHEEE
Confidence 4 666665543 56799999999999998 531 12447999999999999999 99999999999999
Q ss_pred CCCCceeecccccccccCCCCCceeeeEecccceeCcccccc
Q 002278 752 DENFDAHLSDFGIARCIPTAMPHASTFVLGTIGYIDPEYAHT 793 (943)
Q Consensus 752 ~~~~~~kl~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~ 793 (943)
+ ++.+||+|||+|+ .+..|+|||++.+
T Consensus 227 ~-~~~vkl~DFG~a~--------------~~~~~~a~e~l~r 253 (282)
T 1zar_A 227 S-EEGIWIIDFPQSV--------------EVGEEGWREILER 253 (282)
T ss_dssp E-TTEEEECCCTTCE--------------ETTSTTHHHHHHH
T ss_pred E-CCcEEEEECCCCe--------------ECCCCCHHHHHHH
Confidence 9 9999999999986 3455788998753
No 350
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.87 E-value=4.8e-23 Score=239.97 Aligned_cols=221 Identities=25% Similarity=0.343 Sum_probs=134.7
Q ss_pred CccccCCCCCCCCCCCCC-----Cccee-EecCCCCcEEEEEcCCCCCccccCCCcCCCCCCCEEEeeCCcccccCCCCc
Q 002278 9 NLANVLLDWDDVHNSDFC-----SWRGV-FCDNSSLSVVSLNLSSLNLGGEISPSIGDLRNLQSIDFQGNKLTGQIPDEI 82 (943)
Q Consensus 9 ~~~~~~~~w~~~~~~~~c-----~w~gv-~c~~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~ 82 (943)
+.-..+.+|.. +.++| .|.|+ .|... +++.|+|++|++++ +|..+. ++|++|+|++|+|+ .+|
T Consensus 28 ~~~~~l~~W~~--~~~~~~~~~~~~~~l~~C~~~--~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip--- 96 (571)
T 3cvr_A 28 DYFSAWDKWEK--QALPGENRNEAVSLLKECLIN--QFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP--- 96 (571)
T ss_dssp HHHHHHHHHHT--TCCTTCCHHHHHHHHHHHHHT--TCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---
T ss_pred hHHHHHHHHhc--cCCccccccchhhhccccccC--CccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---
Confidence 33346778864 46778 79999 78642 56778888888875 776663 67888888888887 566
Q ss_pred cCCCCCcEEeccCCCcCCccchhccccccceEEEecCcccccCCCcccCCCCCCcEEEEeccccccccchhcccccccee
Q 002278 83 GNCGSLVHIELSDNSLYGDIPFSISKLKQLEFLNLKNNQLTGPIPSTLTQIPNLKTLDLARNQLTGEIPRLIYWNEVLQY 162 (943)
Q Consensus 83 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 162 (943)
..+++|++|+|++|+|++ +|. |.+ +|++|+|++|+|++ +|. .+++|+.|+|++|+|++ +|.
T Consensus 97 ~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---------- 157 (571)
T 3cvr_A 97 ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---------- 157 (571)
T ss_dssp CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC----------
T ss_pred cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC----------
Confidence 446778888888887775 565 554 77777777777775 444 46667777777776664 332
Q ss_pred ccccCCccCCCCCcccccccccceeeccceecccccCCCCcCCCcccEEEeecccccCcCCCCCCcceEeEEEecCcccc
Q 002278 163 LGLRGNALTGMLSPDMCQLTGLWYFDVRGNNLTGTIPDSIGNCTSFEILDISYNQITGEIPYNIGFLQVATLSLQGNKLT 242 (943)
Q Consensus 163 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~L~~L~L~~n~l~ 242 (943)
.+++|++|+|++|+|++ +|. |. ++|++|+|++|+|+ .+|. +.. +|
T Consensus 158 -----------------~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~-~L----------- 202 (571)
T 3cvr_A 158 -----------------LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV-RN----------- 202 (571)
T ss_dssp -----------------CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC---------------
T ss_pred -----------------cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH-hh-----------
Confidence 23455555555555554 343 44 66777777777766 3443 221 22
Q ss_pred ccCCccccccCCCcEEecCCCCCCCCCCcccCCCCCcceEEecCCCCCCCCCCCcCCCC
Q 002278 243 GKIPEVIGLMQALAVLDLSENELVGPIPPILGNLSYTGKLYLHGNKLTGPIPPELGNMS 301 (943)
Q Consensus 243 ~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 301 (943)
+.....|+.|+|++|.|+ .+|..+..+++|+.|+|++|.+++.+|..|..+.
T Consensus 203 ------~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 203 ------HHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp -----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred ------hcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 011223455555555555 3444455566666666666666655555554443
No 351
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.86 E-value=5.2e-21 Score=195.34 Aligned_cols=161 Identities=26% Similarity=0.286 Sum_probs=89.0
Q ss_pred cceEEEccccccCCcCcccccCCCcCcEEEeeCCcccCcccccccccCccceeeccCCcCCCCCCCCCCCCCCccEEecC
Q 002278 326 QLFELNLADNNLEGPIPHNISSCTALNQFNVHGNRLSGAIPSSFRNLGSLTYLNLSRNNFKGKVPTELGRIINLDTLDLS 405 (943)
Q Consensus 326 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls 405 (943)
+|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|+|++|++++..+..+..+++|+.|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 44555555555554444444555555555555555554444445555555555555555554444445555556666666
Q ss_pred CCcCCCccCCCcccccccceeecccccccccCCccccCCCccceecccCccccccCChhhhcccccceecccCcccCCCC
Q 002278 406 VNNFSGSVPASIGDLEHLLTLNLSRNHLNGLLPAEFGNLRSIQTIDMSFNQLSGSIPAELGQLQNIISLILNNNNLQGGI 485 (943)
Q Consensus 406 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 485 (943)
+|+|++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|.+.+. +++|+.|+++.|+++|.+
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~L~~~~n~~~g~i 181 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVV 181 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC-------TTTTHHHHHHHHHCTTTB
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC-------CCCHHHHHHHHHhCCcee
Confidence 6665554444455566666666666666655555556666666666666655532 335566666666666666
Q ss_pred CCcCcccc
Q 002278 486 PDQLSNCF 493 (943)
Q Consensus 486 p~~~~~l~ 493 (943)
|..++.++
T Consensus 182 p~~~~~l~ 189 (208)
T 2o6s_A 182 RNSAGSVA 189 (208)
T ss_dssp BCTTSSBC
T ss_pred eccCcccc
Confidence 65555443
No 352
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.85 E-value=3.4e-21 Score=224.40 Aligned_cols=188 Identities=27% Similarity=0.359 Sum_probs=114.4
Q ss_pred CCcEEecCCCCCCCCCCcccCCCCCcceEEecCCCCCCCCCCCcCCCCcCcEEEcccCccccccccccCCcccceEEEcc
Q 002278 254 ALAVLDLSENELVGPIPPILGNLSYTGKLYLHGNKLTGPIPPELGNMSKLSYLQLQNNQLVGTIPAELGKLEQLFELNLA 333 (943)
Q Consensus 254 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 333 (943)
+|+.|+|++|.+++ +|..+ .++|+.|+|++|+|+ .+| ..+++|++|++++|+|++ +|. +.. +|+.|+|+
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 78888888888876 45444 266778888888777 445 345777777777777775 554 544 67777777
Q ss_pred ccccCCcCcccccCCCcCcEEEeeCCcccCcccccccccCccceeeccCCcCCCCCCCCCCCCCCccEEecCCCcCCCcc
Q 002278 334 DNNLEGPIPHNISSCTALNQFNVHGNRLSGAIPSSFRNLGSLTYLNLSRNNFKGKVPTELGRIINLDTLDLSVNNFSGSV 413 (943)
Q Consensus 334 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 413 (943)
+|+|++ +|. .+++|+.|+|++|+|++ +|. .+++|+.|+|++|++++ +|. +. ++|+.|+|++|+|+ .+
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 777775 333 45667777777777664 333 35666666666666664 444 44 56666666666666 44
Q ss_pred CCCccccccc-------ceeecccccccccCCccccCCCccceecccCccccccCChhhhccc
Q 002278 414 PASIGDLEHL-------LTLNLSRNHLNGLLPAEFGNLRSIQTIDMSFNQLSGSIPAELGQLQ 469 (943)
Q Consensus 414 ~~~~~~l~~L-------~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 469 (943)
|. |.. +| +.|+|++|+|+ .+|..+..+++|+.|+|++|+|++.+|..|..+.
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 44 433 44 55555555555 3444444455555555555555555555554443
No 353
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=9e-21 Score=193.55 Aligned_cols=162 Identities=22% Similarity=0.268 Sum_probs=89.0
Q ss_pred cCcEEEcccCccccccccccCCcccceEEEccccccCCcCcccccCCCcCcEEEeeCCcccCcccccccccCccceeecc
Q 002278 302 KLSYLQLQNNQLVGTIPAELGKLEQLFELNLADNNLEGPIPHNISSCTALNQFNVHGNRLSGAIPSSFRNLGSLTYLNLS 381 (943)
Q Consensus 302 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 381 (943)
+|++|++++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|++++|++++..+..|..+++|++|+|+
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 44444444444444444444445555555555555554444444555555555555555554444445555555555555
Q ss_pred CCcCCCCCCCCCCCCCCccEEecCCCcCCCccCCCcccccccceeecccccccccCCccccCCCccceecccCccccccC
Q 002278 382 RNNFKGKVPTELGRIINLDTLDLSVNNFSGSVPASIGDLEHLLTLNLSRNHLNGLLPAEFGNLRSIQTIDMSFNQLSGSI 461 (943)
Q Consensus 382 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 461 (943)
+|++++..+..+..+++|+.|++++|++++..+..|..+++|+.|+|++|.+.+ .+++|+.|+++.|+++|.+
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~i 181 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVV 181 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTB
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCcee
Confidence 555554444445556666666666666665444445666666666666665543 2345666666666666666
Q ss_pred Chhhhcccc
Q 002278 462 PAELGQLQN 470 (943)
Q Consensus 462 p~~~~~l~~ 470 (943)
|..++.++.
T Consensus 182 p~~~~~l~~ 190 (208)
T 2o6s_A 182 RNSAGSVAP 190 (208)
T ss_dssp BCTTSSBCT
T ss_pred eccCccccC
Confidence 666655543
No 354
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.84 E-value=1.5e-20 Score=194.83 Aligned_cols=158 Identities=27% Similarity=0.246 Sum_probs=128.6
Q ss_pred CCCCCCcceeEecCCCCcEEEEEcCCCCCccccCCCcCCCCCCCEEEeeCCcccccCCCCccCCCCCcEEeccCCCcCCc
Q 002278 22 NSDFCSWRGVFCDNSSLSVVSLNLSSLNLGGEISPSIGDLRNLQSIDFQGNKLTGQIPDEIGNCGSLVHIELSDNSLYGD 101 (943)
Q Consensus 22 ~~~~c~w~gv~c~~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 101 (943)
+++.|+|.+|.|.+.. ++ .+|..+. ++|++|+|++|+|++..|..|.++++|++|+|++|+|+..
T Consensus 15 ~~~~Cs~~~v~c~~~~------------l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i 79 (229)
T 3e6j_A 15 SQCSCSGTTVDCRSKR------------HA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGAL 79 (229)
T ss_dssp TTCEEETTEEECTTSC------------CS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCEEeCCEeEccCCC------------cC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCc
Confidence 5799999999997543 33 5666554 8899999999999988889999999999999999999866
Q ss_pred cchhccccccceEEEecCcccccCCCcccCCCCCCcEEEEeccccccccchhccccccceeccccCCccCCCCCcccccc
Q 002278 102 IPFSISKLKQLEFLNLKNNQLTGPIPSTLTQIPNLKTLDLARNQLTGEIPRLIYWNEVLQYLGLRGNALTGMLSPDMCQL 181 (943)
Q Consensus 102 ~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 181 (943)
.+..|..+++|++|+|++|+|++..+..|..+++|++|+|++|+|+ .+|..+..+++|++|+|++|+|+++++..|..+
T Consensus 80 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 158 (229)
T 3e6j_A 80 PVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRL 158 (229)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTC
T ss_pred ChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCC
Confidence 6677899999999999999999777778899999999999999998 667777777777777777777777666666666
Q ss_pred cccceeeccceecc
Q 002278 182 TGLWYFDVRGNNLT 195 (943)
Q Consensus 182 ~~L~~L~L~~N~i~ 195 (943)
++|+.|+|++|.+.
T Consensus 159 ~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 159 SSLTHAYLFGNPWD 172 (229)
T ss_dssp TTCCEEECTTSCBC
T ss_pred CCCCEEEeeCCCcc
Confidence 66666666666655
No 355
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=8e-20 Score=187.90 Aligned_cols=150 Identities=20% Similarity=0.209 Sum_probs=113.7
Q ss_pred EEcCCCCCccccCCCcCCCCCCCEEEeeCCcccccCCCCccCCCCCcEEeccCCCcCCccchhccccccceEEEecCccc
Q 002278 43 LNLSSLNLGGEISPSIGDLRNLQSIDFQGNKLTGQIPDEIGNCGSLVHIELSDNSLYGDIPFSISKLKQLEFLNLKNNQL 122 (943)
Q Consensus 43 L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l 122 (943)
+++++++++ .+|..+. ++|++|+|++|+|++..+..|..+++|++|+|++|+|++..|.+|.++++|++|+|++|+|
T Consensus 16 v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l 92 (220)
T 2v9t_B 16 VDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI 92 (220)
T ss_dssp EECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred EEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence 344455666 5676664 6889999999999877777888899999999999999877788888888888888888888
Q ss_pred ccCCCcccCCCCCCcEEEEeccccccccchhccccccceeccccCCccCCCCCcccccccccceeeccceecc
Q 002278 123 TGPIPSTLTQIPNLKTLDLARNQLTGEIPRLIYWNEVLQYLGLRGNALTGMLSPDMCQLTGLWYFDVRGNNLT 195 (943)
Q Consensus 123 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~ 195 (943)
+...+..|..+++|++|+|++|+|++..|..|..+++|++|+|++|+|+++.+..|..+++|+.|+|++|.+.
T Consensus 93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 8666667788888888888888888776777777777777777777766666555555555555555555554
No 356
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=3.4e-20 Score=190.73 Aligned_cols=133 Identities=20% Similarity=0.228 Sum_probs=67.2
Q ss_pred ceeeccCCcCCCCCC-CCCCCCCCccEEecCCCcCCCccCCCcccccccceeecccccccccCCccccCCCccceecccC
Q 002278 376 TYLNLSRNNFKGKVP-TELGRIINLDTLDLSVNNFSGSVPASIGDLEHLLTLNLSRNHLNGLLPAEFGNLRSIQTIDMSF 454 (943)
Q Consensus 376 ~~L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 454 (943)
+.|+|++|++++..+ ..|..+++|+.|+|++|+|++..+..|.++++|++|+|++|+|++..+..|.++++|++|+|++
T Consensus 35 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 114 (220)
T 2v70_A 35 AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRS 114 (220)
T ss_dssp SEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTT
T ss_pred CEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCC
Confidence 344444444443322 2234444444444444444444444455555555555555555544444455555555555555
Q ss_pred ccccccCChhhhcccccceecccCcccCCCCCCcCccccCCcccccCCcccccc
Q 002278 455 NQLSGSIPAELGQLQNIISLILNNNNLQGGIPDQLSNCFSLSNLNVSYNNLSGI 508 (943)
Q Consensus 455 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~ 508 (943)
|+|++..|..|..+++|+.|+|++|+|++..|..|..+++|+.|+|++|++++.
T Consensus 115 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 115 NRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp SCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred CcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 555544455555555555555555555555555555555555555555555543
No 357
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.80 E-value=1.2e-19 Score=201.90 Aligned_cols=127 Identities=24% Similarity=0.224 Sum_probs=62.1
Q ss_pred eEEecCCCCCCCCCCCcCCCCcCcEEEcccCccccccccccC-CcccceEEEccccccCCcCcccccCCCcCcEEEeeCC
Q 002278 281 KLYLHGNKLTGPIPPELGNMSKLSYLQLQNNQLVGTIPAELG-KLEQLFELNLADNNLEGPIPHNISSCTALNQFNVHGN 359 (943)
Q Consensus 281 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 359 (943)
.+++++|.++. +|..+. ..++.|+|++|+|++..+..|. .+++|+.|+|++|+|+++.+..|..+++|++|+|++|
T Consensus 22 ~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 22 ILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp EEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 45555555553 333332 2355555555555544444444 5555555555555555444444555555555555555
Q ss_pred cccCcccccccccCccceeeccCCcCCCCCCCCCCCCCCccEEecCCCcCC
Q 002278 360 RLSGAIPSSFRNLGSLTYLNLSRNNFKGKVPTELGRIINLDTLDLSVNNFS 410 (943)
Q Consensus 360 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 410 (943)
+|+++.+..|.++++|+.|+|++|++++..|..|..+++|+.|+|++|+|+
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~ 149 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC
Confidence 554444444444444444444444444444444444444444444444444
No 358
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.80 E-value=8.9e-20 Score=196.28 Aligned_cols=169 Identities=22% Similarity=0.337 Sum_probs=76.3
Q ss_pred CCcCcEEEcccCccccccccccCCcccceEEEccccccCCcCcccccCCCcCcEEEeeCCcccCcccccccccCccceee
Q 002278 300 MSKLSYLQLQNNQLVGTIPAELGKLEQLFELNLADNNLEGPIPHNISSCTALNQFNVHGNRLSGAIPSSFRNLGSLTYLN 379 (943)
Q Consensus 300 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 379 (943)
+++|+.|++++|.+... + .+..+++|++|+|++|++++..+ +..+++|+.|++++|++++. + .+..+++|+.|+
T Consensus 45 l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~ 118 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL-S-SLKDLKKLKSLS 118 (291)
T ss_dssp HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG-G-GGTTCTTCCEEE
T ss_pred cCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC-h-hhccCCCCCEEE
Confidence 34444444444444322 1 23344444444444444443222 44444444444444444421 1 244444444444
Q ss_pred ccCCcCCCCCCCCCCCCCCccEEecCCCcCCCccCCCcccccccceeecccccccccCCccccCCCccceecccCccccc
Q 002278 380 LSRNNFKGKVPTELGRIINLDTLDLSVNNFSGSVPASIGDLEHLLTLNLSRNHLNGLLPAEFGNLRSIQTIDMSFNQLSG 459 (943)
Q Consensus 380 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 459 (943)
|++|++++. ..+..+++|+.|++++|++++. ..+..+++|+.|+|++|++++..| +..+++|+.|+|++|+|++
T Consensus 119 L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~ 192 (291)
T 1h6t_A 119 LEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD 192 (291)
T ss_dssp CTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred CCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC
Confidence 444444422 2344444455555555554432 234455555555555555554332 5555555555555555552
Q ss_pred cCChhhhcccccceecccCcccC
Q 002278 460 SIPAELGQLQNIISLILNNNNLQ 482 (943)
Q Consensus 460 ~~p~~~~~l~~L~~L~L~~N~l~ 482 (943)
+| .+..+++|+.|++++|+++
T Consensus 193 -l~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 193 -LR-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp -CG-GGTTCTTCSEEEEEEEEEE
T ss_pred -Ch-hhccCCCCCEEECcCCccc
Confidence 22 2455555555555555554
No 359
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.80 E-value=5.2e-22 Score=232.78 Aligned_cols=204 Identities=22% Similarity=0.206 Sum_probs=149.0
Q ss_pred cCCCCCcEEeccCCCcCCccchhccccccceEEEecCcc-------------cccCCCcccCCCCCCcEEE-Eecccccc
Q 002278 83 GNCGSLVHIELSDNSLYGDIPFSISKLKQLEFLNLKNNQ-------------LTGPIPSTLTQIPNLKTLD-LARNQLTG 148 (943)
Q Consensus 83 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~-------------l~~~~~~~~~~l~~L~~L~-Ls~N~l~~ 148 (943)
..+++|+.|+|++|+++ .+|.+++.+++|+.|++++|. +.+..|..++.+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 45777888888888887 678888888888888887665 3445566666666676666 5555432
Q ss_pred ccchhccccccceeccccCCccCCCCCcccccccccceeeccceecccccCCCCcCCCcccEEEeecccccCcCCCCCCc
Q 002278 149 EIPRLIYWNEVLQYLGLRGNALTGMLSPDMCQLTGLWYFDVRGNNLTGTIPDSIGNCTSFEILDISYNQITGEIPYNIGF 228 (943)
Q Consensus 149 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 228 (943)
.|+.+.+++|.++.+.+ ..|+.|+|++|+|++ +|. |+++++|+.|+|++|+|+
T Consensus 424 ----------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~--------- 476 (567)
T 1dce_A 424 ----------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR--------- 476 (567)
T ss_dssp ----------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC---------
T ss_pred ----------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc---------
Confidence 34555566666655432 247888888888885 565 888888888888888877
Q ss_pred ceEeEEEecCccccccCCccccccCCCcEEecCCCCCCCCCCcccCCCCCcceEEecCCCCCCCC-CCCcCCCCcCcEEE
Q 002278 229 LQVATLSLQGNKLTGKIPEVIGLMQALAVLDLSENELVGPIPPILGNLSYTGKLYLHGNKLTGPI-PPELGNMSKLSYLQ 307 (943)
Q Consensus 229 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~ 307 (943)
.+|..++.+++|+.|+|++|.|++ +| .|+.+++|+.|+|++|+|++.. |..|..+++|+.|+
T Consensus 477 ---------------~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~ 539 (567)
T 1dce_A 477 ---------------ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLN 539 (567)
T ss_dssp ---------------CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEE
T ss_pred ---------------ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEE
Confidence 355667778888888888888886 45 7888888888888888888776 88888888888888
Q ss_pred cccCccccccccc---cCCcccceEEEc
Q 002278 308 LQNNQLVGTIPAE---LGKLEQLFELNL 332 (943)
Q Consensus 308 L~~N~l~~~~~~~---~~~l~~L~~L~L 332 (943)
|++|++++.+|.. +..+++|+.|++
T Consensus 540 L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 540 LQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred ecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 8888888654432 234678888764
No 360
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.80 E-value=9.1e-20 Score=202.89 Aligned_cols=176 Identities=24% Similarity=0.266 Sum_probs=110.9
Q ss_pred cEEEcccCccccccccccCCcccceEEEccccccCCcCccccc-CCCcCcEEEeeCCcccCcccccccccCccceeeccC
Q 002278 304 SYLQLQNNQLVGTIPAELGKLEQLFELNLADNNLEGPIPHNIS-SCTALNQFNVHGNRLSGAIPSSFRNLGSLTYLNLSR 382 (943)
Q Consensus 304 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 382 (943)
+.+++++|.++ .+|..+. +.++.|+|++|+|++..+..|. .+++|+.|+|++|+|+++.+..|.++++|++|+|++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 56777777777 4554443 3466777777777766666665 677777777777777766666677777777777777
Q ss_pred CcCCCCCCCCCCCCCCccEEecCCCcCCCccCCCcccccccceeecccccccccCCccc---cCCCccceecccCccccc
Q 002278 383 NNFKGKVPTELGRIINLDTLDLSVNNFSGSVPASIGDLEHLLTLNLSRNHLNGLLPAEF---GNLRSIQTIDMSFNQLSG 459 (943)
Q Consensus 383 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~ 459 (943)
|+|++..+..|..+.+|+.|+|++|+|++..|..|.++++|+.|+|++|+|+++.+..| ..+++|+.|+|++|+|++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 77665555566666666666666666665556666666666666666666665444444 446666666666666664
Q ss_pred cCChhhhccccc--ceecccCcccC
Q 002278 460 SIPAELGQLQNI--ISLILNNNNLQ 482 (943)
Q Consensus 460 ~~p~~~~~l~~L--~~L~L~~N~l~ 482 (943)
..+..|..++.+ +.|+|++|++.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 333455555542 55555555554
No 361
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=2.2e-19 Score=184.68 Aligned_cols=151 Identities=17% Similarity=0.175 Sum_probs=96.0
Q ss_pred EEEcCCCCCccccCCCcCCCCCCCEEEeeCCcccccCC-CCccCCCCCcEEeccCCCcCCccchhccccccceEEEecCc
Q 002278 42 SLNLSSLNLGGEISPSIGDLRNLQSIDFQGNKLTGQIP-DEIGNCGSLVHIELSDNSLYGDIPFSISKLKQLEFLNLKNN 120 (943)
Q Consensus 42 ~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n 120 (943)
.+++++|.++ .+|..+. ..+++|+|++|+|++..| ..|..+++|++|+|++|+|++..+.+|+++++|++|+|++|
T Consensus 15 ~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 4666777776 4666553 345778888888875544 34677777777777777777555556777777777777777
Q ss_pred ccccCCCcccCCCCCCcEEEEeccccccccchhccccccceeccccCCccCCCCCcccccccccceeeccceecccccCC
Q 002278 121 QLTGPIPSTLTQIPNLKTLDLARNQLTGEIPRLIYWNEVLQYLGLRGNALTGMLSPDMCQLTGLWYFDVRGNNLTGTIPD 200 (943)
Q Consensus 121 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~ 200 (943)
++++..+..|..+++|++|+|++|+|++..|..|..+ ++|++|+|++|+|++..|.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l------------------------~~L~~L~L~~N~l~~~~~~ 147 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGL------------------------SSVRLLSLYDNQITTVAPG 147 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTC------------------------TTCSEEECTTSCCCCBCTT
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCC------------------------ccCCEEECCCCcCCEECHH
Confidence 7776666666666666666666666665555555444 4455555555555544455
Q ss_pred CCcCCCcccEEEeeccccc
Q 002278 201 SIGNCTSFEILDISYNQIT 219 (943)
Q Consensus 201 ~l~~l~~L~~L~Ls~N~l~ 219 (943)
.|..+++|++|+|++|.+.
T Consensus 148 ~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 148 AFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp TTTTCTTCCEEECCSCCEE
T ss_pred HhcCCCCCCEEEecCcCCc
Confidence 5555556666666666554
No 362
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.79 E-value=4.3e-19 Score=182.43 Aligned_cols=152 Identities=26% Similarity=0.365 Sum_probs=93.3
Q ss_pred cEEEcccCccccccccccCCcccceEEEccccccCCcCcccccCCCcCcEEEeeCCcccCcccccccccCccceeeccCC
Q 002278 304 SYLQLQNNQLVGTIPAELGKLEQLFELNLADNNLEGPIPHNISSCTALNQFNVHGNRLSGAIPSSFRNLGSLTYLNLSRN 383 (943)
Q Consensus 304 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 383 (943)
+.+++++|.++ .+|..+. ++|+.|+|++|+|+++.+..|..+++|+.|+|++|+|+++.|..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 34555555555 3343332 45556666666666555555666666666666666666555666666666666666666
Q ss_pred cCCCCCCCCCCCCCCccEEecCCCcCCCccCCCcccccccceeecccccccccCCccccCCCccceecccCcccc
Q 002278 384 NFKGKVPTELGRIINLDTLDLSVNNFSGSVPASIGDLEHLLTLNLSRNHLNGLLPAEFGNLRSIQTIDMSFNQLS 458 (943)
Q Consensus 384 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 458 (943)
+++...+..|..+++|+.|+|++|+|++..|..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|++.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 666444445566666666666666666655666666666666666666666665566666666666666666665
No 363
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.79 E-value=4.2e-19 Score=209.27 Aligned_cols=172 Identities=28% Similarity=0.439 Sum_probs=86.9
Q ss_pred cccCCCcEEecCCCCCCCCCCcccCCCCCcceEEecCCCCCCCCCCCcCCCCcCcEEEcccCccccccccccCCcccceE
Q 002278 250 GLMQALAVLDLSENELVGPIPPILGNLSYTGKLYLHGNKLTGPIPPELGNMSKLSYLQLQNNQLVGTIPAELGKLEQLFE 329 (943)
Q Consensus 250 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 329 (943)
..+.+|+.|++++|.+... + .+..+++|+.|+|++|.+++..+ +..+++|+.|+|++|++.+ ++ .+..+++|+.
T Consensus 40 ~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~ 113 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKS 113 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCE
T ss_pred hcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCE
Confidence 4455566666666665532 2 34555555555555555554332 5555555555555555542 11 3444455555
Q ss_pred EEccccccCCcCcccccCCCcCcEEEeeCCcccCcccccccccCccceeeccCCcCCCCCCCCCCCCCCccEEecCCCcC
Q 002278 330 LNLADNNLEGPIPHNISSCTALNQFNVHGNRLSGAIPSSFRNLGSLTYLNLSRNNFKGKVPTELGRIINLDTLDLSVNNF 409 (943)
Q Consensus 330 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 409 (943)
|+|++|+|.+. . .+..+++|+.|+|++|++++. ..+..+++|+.|+|++|.|
T Consensus 114 L~Ls~N~l~~l--~------------------------~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l 165 (605)
T 1m9s_A 114 LSLEHNGISDI--N------------------------GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQI 165 (605)
T ss_dssp EECTTSCCCCC--G------------------------GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCC
T ss_pred EEecCCCCCCC--c------------------------cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcC
Confidence 55555554432 2 244444455555555554432 3444555555555555555
Q ss_pred CCccCCCcccccccceeecccccccccCCccccCCCccceecccCccccc
Q 002278 410 SGSVPASIGDLEHLLTLNLSRNHLNGLLPAEFGNLRSIQTIDMSFNQLSG 459 (943)
Q Consensus 410 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 459 (943)
.+..| +..+++|+.|+|++|+|++. ..|..+++|+.|+|++|++++
T Consensus 166 ~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 166 SDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred CCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 54433 55555555555555555542 235555555555555555553
No 364
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.79 E-value=8e-20 Score=215.42 Aligned_cols=181 Identities=22% Similarity=0.330 Sum_probs=121.4
Q ss_pred CCCCcCcEEEcccCccccccccccCCcccceEEEccccccCCcCcccccCCCcCcEEEeeCCcccCcccccccccCccce
Q 002278 298 GNMSKLSYLQLQNNQLVGTIPAELGKLEQLFELNLADNNLEGPIPHNISSCTALNQFNVHGNRLSGAIPSSFRNLGSLTY 377 (943)
Q Consensus 298 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 377 (943)
..+++|+.|++++|.+.. ++ .+..+++|+.|+|++|+|.+..+ +..+++|+.|+|++|.|++. ..+..+++|+.
T Consensus 40 ~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~ 113 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKS 113 (605)
T ss_dssp HHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCCE
T ss_pred hcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCCE
Confidence 344555555555555542 22 35555555566666665554433 55666666666666666532 25677778888
Q ss_pred eeccCCcCCCCCCCCCCCCCCccEEecCCCcCCCccCCCcccccccceeecccccccccCCccccCCCccceecccCccc
Q 002278 378 LNLSRNNFKGKVPTELGRIINLDTLDLSVNNFSGSVPASIGDLEHLLTLNLSRNHLNGLLPAEFGNLRSIQTIDMSFNQL 457 (943)
Q Consensus 378 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 457 (943)
|+|++|++++. ..+..+++|+.|+|++|.|++. ..+..+++|+.|+|++|+|++..| +..+++|+.|+|++|+|
T Consensus 114 L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 114 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp EECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCC
Confidence 88888887743 3577788888888888888754 567788888888888888886655 77888888888888888
Q ss_pred cccCChhhhcccccceecccCcccCCCCCCcCccc
Q 002278 458 SGSIPAELGQLQNIISLILNNNNLQGGIPDQLSNC 492 (943)
Q Consensus 458 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l 492 (943)
++ + +.+..+++|+.|+|++|++++.....+..+
T Consensus 188 ~~-l-~~l~~l~~L~~L~L~~N~l~~~p~~~~~~l 220 (605)
T 1m9s_A 188 SD-L-RALAGLKNLDVLELFSQECLNKPINHQSNL 220 (605)
T ss_dssp CB-C-GGGTTCTTCSEEECCSEEEECCCCCCCSSC
T ss_pred CC-C-hHHccCCCCCEEEccCCcCcCCcccccccE
Confidence 75 3 357788888888888888875444333333
No 365
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.79 E-value=4.2e-19 Score=191.01 Aligned_cols=172 Identities=28% Similarity=0.439 Sum_probs=90.7
Q ss_pred cccCCCcEEecCCCCCCCCCCcccCCCCCcceEEecCCCCCCCCCCCcCCCCcCcEEEcccCccccccccccCCcccceE
Q 002278 250 GLMQALAVLDLSENELVGPIPPILGNLSYTGKLYLHGNKLTGPIPPELGNMSKLSYLQLQNNQLVGTIPAELGKLEQLFE 329 (943)
Q Consensus 250 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 329 (943)
..+++|+.|++++|.+... + .+..+++|+.|+|++|++++..+ +..+++|++|++++|++++ ++ .+..+++|++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCE
T ss_pred hhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCE
Confidence 3455666666666665533 2 24555555555555555554322 5555555555555555543 11 2444445555
Q ss_pred EEccccccCCcCcccccCCCcCcEEEeeCCcccCcccccccccCccceeeccCCcCCCCCCCCCCCCCCccEEecCCCcC
Q 002278 330 LNLADNNLEGPIPHNISSCTALNQFNVHGNRLSGAIPSSFRNLGSLTYLNLSRNNFKGKVPTELGRIINLDTLDLSVNNF 409 (943)
Q Consensus 330 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 409 (943)
|+|++|++++. ..+..+++|+.|++++|++++. ..+..+++|+.|++++|++
T Consensus 117 L~L~~n~i~~~--------------------------~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l 168 (291)
T 1h6t_A 117 LSLEHNGISDI--------------------------NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQI 168 (291)
T ss_dssp EECTTSCCCCC--------------------------GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCC
T ss_pred EECCCCcCCCC--------------------------hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcc
Confidence 55555544432 2344455555555555555432 3455555555666666655
Q ss_pred CCccCCCcccccccceeecccccccccCCccccCCCccceecccCccccc
Q 002278 410 SGSVPASIGDLEHLLTLNLSRNHLNGLLPAEFGNLRSIQTIDMSFNQLSG 459 (943)
Q Consensus 410 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 459 (943)
++..+ +..+++|+.|+|++|++++. | .+..+++|+.|++++|+++.
T Consensus 169 ~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 169 SDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred ccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 54333 55566666666666666542 2 35666666666666666653
No 366
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=7.4e-19 Score=181.95 Aligned_cols=154 Identities=22% Similarity=0.295 Sum_probs=97.4
Q ss_pred EEEeeCCcccCcccccccccCccceeeccCCcCCCCCCCCCCCCCCccEEecCCCcCCCccCCCcccccccceeeccccc
Q 002278 353 QFNVHGNRLSGAIPSSFRNLGSLTYLNLSRNNFKGKVPTELGRIINLDTLDLSVNNFSGSVPASIGDLEHLLTLNLSRNH 432 (943)
Q Consensus 353 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 432 (943)
.++.+++.+. .+|..+. ++|+.|+|++|++++..|..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|+
T Consensus 23 ~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 23 TVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 4444444444 2232221 556666666666665556666666666666666666665444556666667777777777
Q ss_pred ccccCCccccCCCccceecccCccccccCChhhhcccccceecccCcccCCCCCCcCccccCCcccccCCccccccCC
Q 002278 433 LNGLLPAEFGNLRSIQTIDMSFNQLSGSIPAELGQLQNIISLILNNNNLQGGIPDQLSNCFSLSNLNVSYNNLSGIIP 510 (943)
Q Consensus 433 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~ 510 (943)
|+++.+..|..+++|+.|+|++|+|+ .+|..+..+++|+.|+|++|+|++..+..+..+++|+.|++++|++++..+
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred CCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 76665666667777777777777776 566667777777777777777776555666677777777777776665443
No 367
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.78 E-value=1.7e-21 Score=228.49 Aligned_cols=204 Identities=22% Similarity=0.187 Sum_probs=153.0
Q ss_pred cccccceEEEecCcccccCCCcccCCCCCCcEEEEeccc-------------cccccchhccccccceecc-ccCCccCC
Q 002278 107 SKLKQLEFLNLKNNQLTGPIPSTLTQIPNLKTLDLARNQ-------------LTGEIPRLIYWNEVLQYLG-LRGNALTG 172 (943)
Q Consensus 107 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-------------l~~~~~~~~~~l~~L~~L~-L~~n~l~~ 172 (943)
..+++|+.|+|++|+++ .+|..++.+++|+.|++++|. +.+.+|..+..+++|+.|+ ++.|.+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~-- 422 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL-- 422 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH--
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc--
Confidence 56889999999999998 789999999999999998775 3334445555555555555 343332
Q ss_pred CCCcccccccccceeeccceecccccCCCCcCCCcccEEEeecccccCcCCCCCCcceEeEEEecCccccccCCcccccc
Q 002278 173 MLSPDMCQLTGLWYFDVRGNNLTGTIPDSIGNCTSFEILDISYNQITGEIPYNIGFLQVATLSLQGNKLTGKIPEVIGLM 252 (943)
Q Consensus 173 ~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l 252 (943)
.+|..+.+++|.|+...+ ..|+. |+|++|.|++ +|. ++.+
T Consensus 423 ---------~~L~~l~l~~n~i~~l~~------~~L~~-----------------------L~Ls~n~l~~-lp~-~~~l 462 (567)
T 1dce_A 423 ---------DDLRSKFLLENSVLKMEY------ADVRV-----------------------LHLAHKDLTV-LCH-LEQL 462 (567)
T ss_dssp ---------HHHHHHHHHHHHHHHHHH------TTCSE-----------------------EECTTSCCSS-CCC-GGGG
T ss_pred ---------chhhhhhhhcccccccCc------cCceE-----------------------EEecCCCCCC-CcC-cccc
Confidence 234444455555443221 12444 4455555544 455 8889
Q ss_pred CCCcEEecCCCCCCCCCCcccCCCCCcceEEecCCCCCCCCCCCcCCCCcCcEEEcccCcccccc-ccccCCcccceEEE
Q 002278 253 QALAVLDLSENELVGPIPPILGNLSYTGKLYLHGNKLTGPIPPELGNMSKLSYLQLQNNQLVGTI-PAELGKLEQLFELN 331 (943)
Q Consensus 253 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~ 331 (943)
++|+.|+|++|.|+ .+|..|+.+++|+.|+|++|+|++ +| .|..+++|+.|+|++|+|++.. |..++.+++|+.|+
T Consensus 463 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~ 539 (567)
T 1dce_A 463 LLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLN 539 (567)
T ss_dssp TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEE
T ss_pred ccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEE
Confidence 99999999999999 678899999999999999999996 56 8999999999999999999776 89999999999999
Q ss_pred ccccccCCcCccc---ccCCCcCcEEEe
Q 002278 332 LADNNLEGPIPHN---ISSCTALNQFNV 356 (943)
Q Consensus 332 L~~N~l~~~~p~~---~~~l~~L~~L~L 356 (943)
|++|++++.+|.. +..+++|+.|++
T Consensus 540 L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 540 LQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred ecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 9999998765532 344788888864
No 368
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.77 E-value=6e-19 Score=178.19 Aligned_cols=155 Identities=16% Similarity=0.198 Sum_probs=135.3
Q ss_pred CcCCCCCCCEEEeeCCcccccCCCCccCCCCCcEEeccCCCcCCccchhccccccceEEEecCcccccCCCcccCCCCCC
Q 002278 57 SIGDLRNLQSIDFQGNKLTGQIPDEIGNCGSLVHIELSDNSLYGDIPFSISKLKQLEFLNLKNNQLTGPIPSTLTQIPNL 136 (943)
Q Consensus 57 ~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 136 (943)
+...+++|++|++++|+|+ .+| .+..+++|++|++++|.++ .+ ..+..+++|++|++++|++++..+..|..+++|
T Consensus 39 ~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 39 TEAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL 114 (197)
T ss_dssp BHHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred ChhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence 3467889999999999998 666 6999999999999999876 33 478899999999999999998889999999999
Q ss_pred cEEEEeccccccccchhccccccceeccccCCc-cCCCCCcccccccccceeeccceecccccCCCCcCCCcccEEEeec
Q 002278 137 KTLDLARNQLTGEIPRLIYWNEVLQYLGLRGNA-LTGMLSPDMCQLTGLWYFDVRGNNLTGTIPDSIGNCTSFEILDISY 215 (943)
Q Consensus 137 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~ 215 (943)
++|+|++|++++..+..+..+++|++|+|++|+ ++.+. .+..+++|++|++++|++++. + .+..+++|++|++++
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFS 190 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECB
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeC
Confidence 999999999998888999999999999999998 87763 688999999999999999864 3 788999999999999
Q ss_pred cccc
Q 002278 216 NQIT 219 (943)
Q Consensus 216 N~l~ 219 (943)
|+|.
T Consensus 191 N~i~ 194 (197)
T 4ezg_A 191 QTIG 194 (197)
T ss_dssp C---
T ss_pred cccC
Confidence 9986
No 369
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.76 E-value=3.4e-19 Score=188.55 Aligned_cols=81 Identities=20% Similarity=0.279 Sum_probs=36.7
Q ss_pred cCCCcEEecCCCCCCCCCCcccCCCCCcceEEecCCCCCCCCCCCcCCCCcCcEEEcccCccccccccccCCcccceEEE
Q 002278 252 MQALAVLDLSENELVGPIPPILGNLSYTGKLYLHGNKLTGPIPPELGNMSKLSYLQLQNNQLVGTIPAELGKLEQLFELN 331 (943)
Q Consensus 252 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 331 (943)
+.++..+++++|.+++.. .+..+++|+.|++++|.++. ++ .+..+++|++|++++|++++..+ +..+++|+.|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 344455555555554321 34444445555555554442 22 34444444444444444443222 44444444444
Q ss_pred ccccccC
Q 002278 332 LADNNLE 338 (943)
Q Consensus 332 L~~N~l~ 338 (943)
|++|+++
T Consensus 92 L~~N~l~ 98 (263)
T 1xeu_A 92 VNRNRLK 98 (263)
T ss_dssp CCSSCCS
T ss_pred CCCCccC
Confidence 4444444
No 370
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.76 E-value=2.4e-19 Score=196.92 Aligned_cols=289 Identities=10% Similarity=0.057 Sum_probs=135.9
Q ss_pred CCCCCEEEeeCCcccccCCCCccC-CCCCcEEeccCCCcCCccchhccccccceEEEecCcccccCCCcccCC-------
Q 002278 61 LRNLQSIDFQGNKLTGQIPDEIGN-CGSLVHIELSDNSLYGDIPFSISKLKQLEFLNLKNNQLTGPIPSTLTQ------- 132 (943)
Q Consensus 61 l~~L~~L~Ls~n~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------- 132 (943)
+.+|++|.++++ +...--..+.. +++|+.|||++|+|. .....-+.++.+..+.+..|.| .+.+|.+
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~-~~~~~~~~~~~~~~~~~~~~~I---~~~aF~~~~~~~~~ 98 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIK-MYSGKAGTYPNGKFYIYMANFV---PAYAFSNVVNGVTK 98 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEEC-CEEESSSSSGGGCCEEECTTEE---CTTTTEEEETTEEE
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeE-EecCcccccccccccccccccc---CHHHhccccccccc
Confidence 556677777653 22111112222 556666666666665 1111111222234444444432 2344444
Q ss_pred -CCCCcEEEEeccccccccchhccccccceeccccCCccCCCCCcccccccccceeeccceec----ccccCCCCcCCCc
Q 002278 133 -IPNLKTLDLARNQLTGEIPRLIYWNEVLQYLGLRGNALTGMLSPDMCQLTGLWYFDVRGNNL----TGTIPDSIGNCTS 207 (943)
Q Consensus 133 -l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i----~~~~~~~l~~l~~ 207 (943)
+++|+.|+|.+ .++...+.+|.++.+|+.|++++|.+..+.+..|....++..+.+..+.. .......|.++..
T Consensus 99 g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 99 GKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp ECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred ccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 55555555555 55544445555555555555555555555555555554444444443211 1122233444444
Q ss_pred cc-EEEeecccccCcCCCCCCcceEeEEEecCccccccCCccccccCCCcEEecCCCCCCCCCCcccCCCCCcceEEecC
Q 002278 208 FE-ILDISYNQITGEIPYNIGFLQVATLSLQGNKLTGKIPEVIGLMQALAVLDLSENELVGPIPPILGNLSYTGKLYLHG 286 (943)
Q Consensus 208 L~-~L~Ls~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 286 (943)
|+ .+.+....- ++. ..........++..+.+.++-...........+++|+.|+|++
T Consensus 178 L~~~i~~~~~~~---l~~-------------------~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~ 235 (329)
T 3sb4_A 178 LETTIQVGAMGK---LED-------------------EIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISK 235 (329)
T ss_dssp CEEEEEECTTCC---HHH-------------------HHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTT
T ss_pred cceeEEecCCCc---HHH-------------------HHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCC
Confidence 44 333322110 000 0000000122333343333211100000001244555555555
Q ss_pred CCCCCCCCCCcCCCCcCcEEEcccCccccccccccCCcccce-EEEccccccCCcCcccccCCCcCcEEEeeCCcccCcc
Q 002278 287 NKLTGPIPPELGNMSKLSYLQLQNNQLVGTIPAELGKLEQLF-ELNLADNNLEGPIPHNISSCTALNQFNVHGNRLSGAI 365 (943)
Q Consensus 287 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~-~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 365 (943)
|+++.+.+.+|.++++|+.|++.+| ++.+.+.+|.++++|+ .+++.+ .++.+.+.+|.+|++|+.+++++|.++.+.
T Consensus 236 n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~ 313 (329)
T 3sb4_A 236 TNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLG 313 (329)
T ss_dssp BCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEEC
T ss_pred CCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccc
Confidence 5555555555666666666666665 5545555666666666 666665 555555666666666666666666666666
Q ss_pred cccccccCccceee
Q 002278 366 PSSFRNLGSLTYLN 379 (943)
Q Consensus 366 ~~~~~~l~~L~~L~ 379 (943)
+.+|.++++|+.++
T Consensus 314 ~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 314 DELFGNGVPSKLIY 327 (329)
T ss_dssp TTTTCTTCCCCEEE
T ss_pred hhhhcCCcchhhhc
Confidence 66666666666664
No 371
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.76 E-value=9.2e-20 Score=220.56 Aligned_cols=202 Identities=19% Similarity=0.184 Sum_probs=104.9
Q ss_pred CCCCCCCCCCCCCCcceeEecCCCCcEEEEEcCCCCCccccCCCcCCCCCCC-----EEEeeCCcccccCCCCccCCCCC
Q 002278 14 LLDWDDVHNSDFCSWRGVFCDNSSLSVVSLNLSSLNLGGEISPSIGDLRNLQ-----SIDFQGNKLTGQIPDEIGNCGSL 88 (943)
Q Consensus 14 ~~~w~~~~~~~~c~w~gv~c~~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~-----~L~Ls~n~l~~~~p~~~~~l~~L 88 (943)
-..|... .+..+.|.++.++. .+++.|+|++|++.. ++..+.....|. .++++.|.+. ..|+.|..+++|
T Consensus 152 ~~~~~~~-~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L 226 (727)
T 4b8c_D 152 KQQPTGD-STPSGTATNSAVST--PLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLW 226 (727)
T ss_dssp ---------------------------------------------------------------------------CCCCC
T ss_pred cCCCcCC-CCccccCCCceecC--CccceEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee-cChhhhccCCCC
Confidence 3456542 45778899988876 468999999999885 344433322222 2333344444 557778888888
Q ss_pred cEEeccCCCcCCccchhccccccceEEEecCcccccCCCcccCCCCCCcEEEEeccccccccchhccccccceeccccCC
Q 002278 89 VHIELSDNSLYGDIPFSISKLKQLEFLNLKNNQLTGPIPSTLTQIPNLKTLDLARNQLTGEIPRLIYWNEVLQYLGLRGN 168 (943)
Q Consensus 89 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n 168 (943)
+.|+|++|++. .+|..+..+++|++|+|++|.|+ .+|..|..+++|++|+|++|+|+ .+|..|..+.+|++|+|++|
T Consensus 227 ~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N 303 (727)
T 4b8c_D 227 HALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDN 303 (727)
T ss_dssp CEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSS
T ss_pred cEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCC
Confidence 88888888888 67777778888888888888888 77888888888888888888888 66777888888888888888
Q ss_pred ccCCCCCcccccccccceeeccceecccccCCCCcCCCc-ccEEEeecccccCcCCC
Q 002278 169 ALTGMLSPDMCQLTGLWYFDVRGNNLTGTIPDSIGNCTS-FEILDISYNQITGEIPY 224 (943)
Q Consensus 169 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~-L~~L~Ls~N~l~~~~~~ 224 (943)
.|+.++ ..|+.+++|++|+|++|.|++.+|..+..+.. +..|+|++|.+++.+|.
T Consensus 304 ~l~~lp-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 304 MVTTLP-WEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp CCCCCC-SSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred CCCccC-hhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 887653 44777777888888887777777766654432 23466777777766654
No 372
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.75 E-value=5.1e-19 Score=187.25 Aligned_cols=165 Identities=21% Similarity=0.302 Sum_probs=73.1
Q ss_pred cceEEecCCCCCCCCCCCcCCCCcCcEEEcccCccccccccccCCcccceEEEccccccCCcCcccccCCCcCcEEEeeC
Q 002278 279 TGKLYLHGNKLTGPIPPELGNMSKLSYLQLQNNQLVGTIPAELGKLEQLFELNLADNNLEGPIPHNISSCTALNQFNVHG 358 (943)
Q Consensus 279 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 358 (943)
+..+++++|.+++.. .+..+++|++|++++|.++. ++ .+..+++|++|+|++|+|++..+ +..+++|+.|++++
T Consensus 21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred HHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence 344444444444221 34444444444444444442 22 34444444444444444443322 44444444444444
Q ss_pred CcccCcccccccccCccceeeccCCcCCCCCCCCCCCCCCccEEecCCCcCCCccCCCcccccccceeecccccccccCC
Q 002278 359 NRLSGAIPSSFRNLGSLTYLNLSRNNFKGKVPTELGRIINLDTLDLSVNNFSGSVPASIGDLEHLLTLNLSRNHLNGLLP 438 (943)
Q Consensus 359 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p 438 (943)
|++++..+ +.. ++|+.|+|++|++++. ..+..+++|+.|++++|+|++. + .+..+++|+.|+|++|++++.
T Consensus 95 N~l~~l~~--~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~-- 165 (263)
T 1xeu_A 95 NRLKNLNG--IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT-- 165 (263)
T ss_dssp SCCSCCTT--CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--
T ss_pred CccCCcCc--ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--
Confidence 44443211 111 4444444444444432 1244444445555555544432 2 344445555555555555433
Q ss_pred ccccCCCccceecccCcccc
Q 002278 439 AEFGNLRSIQTIDMSFNQLS 458 (943)
Q Consensus 439 ~~~~~l~~L~~L~Ls~N~l~ 458 (943)
..+..+++|+.|++++|+++
T Consensus 166 ~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 166 GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp TTSTTCCCCCEEEEEEEEEE
T ss_pred HHhccCCCCCEEeCCCCccc
Confidence 34444555555555555554
No 373
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.75 E-value=3e-19 Score=196.12 Aligned_cols=290 Identities=12% Similarity=0.075 Sum_probs=145.4
Q ss_pred CCCCcEEeccCCCcCCccchhccc-cccceEEEecCcccc--cCCCcccCCCCCCcEEEEeccccccccchhccc-----
Q 002278 85 CGSLVHIELSDNSLYGDIPFSISK-LKQLEFLNLKNNQLT--GPIPSTLTQIPNLKTLDLARNQLTGEIPRLIYW----- 156 (943)
Q Consensus 85 l~~L~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~Ls~n~l~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~----- 156 (943)
+.+|+.|.++++ +...-...+.. +++|+.|||++|++. ...+.. ++.++.+.+..|.| .+..|.+
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~---~~~~~~~~~~~~~I---~~~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGT---YPNGKFYIYMANFV---PAYAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSS---SGGGCCEEECTTEE---CTTTTEEEETTE
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCcccc---cccccccccccccc---CHHHhccccccc
Confidence 556777777654 22111122333 566777777777766 222222 22345555555533 2445555
Q ss_pred ---cccceeccccCCccCCCCCcccccccccceeeccceecccccCCCCcCCCcccEEEeecccccCcCCCCCCcceEeE
Q 002278 157 ---NEVLQYLGLRGNALTGMLSPDMCQLTGLWYFDVRGNNLTGTIPDSIGNCTSFEILDISYNQITGEIPYNIGFLQVAT 233 (943)
Q Consensus 157 ---l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~L~~ 233 (943)
+.+|+.|.|.+ .++.+.+..|.++++|+.+++++|.+..+.+..|.++.++..+.+..+...
T Consensus 97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~-------------- 161 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAY-------------- 161 (329)
T ss_dssp EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHH--------------
T ss_pred ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhh--------------
Confidence 66666666666 666666666666666666666666665555555555555554444332210
Q ss_pred EEecCccccccCCccccccCCCc-EEecCCCCCCCCCCcccCCCCCcceEEecCCCCCCCCCCCcCCCCcCcEEEcccCc
Q 002278 234 LSLQGNKLTGKIPEVIGLMQALA-VLDLSENELVGPIPPILGNLSYTGKLYLHGNKLTGPIPPELGNMSKLSYLQLQNNQ 312 (943)
Q Consensus 234 L~L~~n~l~~~~~~~l~~l~~L~-~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 312 (943)
..........|..+..|+ .+++.... .++..+. ..-....+++.+.+.++-
T Consensus 162 -----~~~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~--------------------~~~~~~~~~~~l~~~~~l 213 (329)
T 3sb4_A 162 -----RFKNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIM--------------------KAGLQPRDINFLTIEGKL 213 (329)
T ss_dssp -----HTSTTTTTSCEEESCCCEEEEEECTTC---CHHHHHH--------------------HTTCCGGGCSEEEEEECC
T ss_pred -----hccccccccccccccccceeEEecCCC---cHHHHHh--------------------hcccCccccceEEEeeee
Confidence 000111122333344444 33332211 0111000 000123344455554442
Q ss_pred ccccccccc-CCcccceEEEccccccCCcCcccccCCCcCcEEEeeCCcccCcccccccccCccc-eeeccCCcCCCCCC
Q 002278 313 LVGTIPAEL-GKLEQLFELNLADNNLEGPIPHNISSCTALNQFNVHGNRLSGAIPSSFRNLGSLT-YLNLSRNNFKGKVP 390 (943)
Q Consensus 313 l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~-~L~L~~N~l~~~~~ 390 (943)
.. .....+ ..+++|+.|+|++|+++.+.+..|.+|++|+.|+|.+| +..+.+.+|.++++|+ .+++.+ .++.+.+
T Consensus 214 ~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~ 290 (329)
T 3sb4_A 214 DN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEF 290 (329)
T ss_dssp CH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECT
T ss_pred cH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEch
Confidence 21 111111 12455666666666666555556666666666666665 5555556666666666 666665 5554555
Q ss_pred CCCCCCCCccEEecCCCcCCCccCCCcccccccceee
Q 002278 391 TELGRIINLDTLDLSVNNFSGSVPASIGDLEHLLTLN 427 (943)
Q Consensus 391 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 427 (943)
..|.++.+|+.|++++|.++...+..|.++++|+.|+
T Consensus 291 ~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 291 GAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred hhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 6666666666666666666655555666666666654
No 374
>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*
Probab=99.75 E-value=3.6e-18 Score=180.13 Aligned_cols=139 Identities=17% Similarity=0.193 Sum_probs=107.6
Q ss_pred hhccccceEEeeeceEEEEEEEe-cCCce--EEEEEecccCcc------------------------cHHHHHHHHHHHh
Q 002278 615 TENLSEKYIVGYGASSTVYKCAL-KNSRP--IAVKKLYNQYPH------------------------NLREFETELETIG 667 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~-~~~~~--vavK~~~~~~~~------------------------~~~~~~~E~~~l~ 667 (943)
..-|+..+.||+|+||.||+|.+ .+|+. ||||++...... ....+.+|++.++
T Consensus 46 ~~~~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~ 125 (258)
T 1zth_A 46 GYITAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLE 125 (258)
T ss_dssp TSEEEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHH
T ss_pred CCchhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHH
Confidence 33467788999999999999998 67888 999986433111 1135788999999
Q ss_pred cCCCCCc--ceeeeEEecCCcceEEEEEccC-C----ChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhh-hCCCCCe
Q 002278 668 SIRHRNI--VSLHGYALSPYGNLLFYDYMVN-G----SLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLH-HDCNPRI 739 (943)
Q Consensus 668 ~l~h~ni--v~l~~~~~~~~~~~lv~e~~~~-g----~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH-~~~~~~i 739 (943)
.+.|+++ ..++++ ...++||||+.+ | +|.++... .++..+..++.|++.|++||| +. +|
T Consensus 126 ~l~~~~i~~p~~~~~----~~~~lVmE~~g~~g~~~~~L~~~~~~------~~~~~~~~i~~qi~~~l~~lH~~~---gi 192 (258)
T 1zth_A 126 RAKEAGVSVPQPYTY----MKNVLLMEFIGEDELPAPTLVELGRE------LKELDVEGIFNDVVENVKRLYQEA---EL 192 (258)
T ss_dssp HHHHTTCCCCCEEEE----ETTEEEEECCEETTEECCBHHHHGGG------GGGSCHHHHHHHHHHHHHHHHHTS---CE
T ss_pred HHHhCCCCCCeEEEc----CCCEEEEEecCCCCCccccHHHHhhc------cChHHHHHHHHHHHHHHHHHHHHC---CE
Confidence 9988764 333332 367999999943 4 66665431 234567889999999999999 88 99
Q ss_pred EecCCCCccEEECCCCceeeccccccccc
Q 002278 740 IHRDVKSSNILIDENFDAHLSDFGIARCI 768 (943)
Q Consensus 740 vH~Dlkp~Nill~~~~~~kl~DFGla~~~ 768 (943)
+||||||+|||++. .++|+|||+|...
T Consensus 193 vHrDlkp~NILl~~--~~~liDFG~a~~~ 219 (258)
T 1zth_A 193 VHADLSEYNIMYID--KVYFIDMGQAVTL 219 (258)
T ss_dssp ECSSCSTTSEEESS--SEEECCCTTCEET
T ss_pred EeCCCCHHHEEEcC--cEEEEECcccccC
Confidence 99999999999998 9999999999754
No 375
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=2.5e-18 Score=173.62 Aligned_cols=153 Identities=14% Similarity=0.253 Sum_probs=89.7
Q ss_pred CCCcCcEEEeeCCcccCcccccccccCccceeeccCCcCCCCCCCCCCCCCCccEEecCCCcCCCccCCCccccccccee
Q 002278 347 SCTALNQFNVHGNRLSGAIPSSFRNLGSLTYLNLSRNNFKGKVPTELGRIINLDTLDLSVNNFSGSVPASIGDLEHLLTL 426 (943)
Q Consensus 347 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 426 (943)
.+++|+.|++++|.|+ .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 3444555555555554 223 3555555555555555443 12345556666666666666665556666666666666
Q ss_pred ecccccccccCCccccCCCccceecccCcc-ccccCChhhhcccccceecccCcccCCCCCCcCccccCCcccccCCccc
Q 002278 427 NLSRNHLNGLLPAEFGNLRSIQTIDMSFNQ-LSGSIPAELGQLQNIISLILNNNNLQGGIPDQLSNCFSLSNLNVSYNNL 505 (943)
Q Consensus 427 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l 505 (943)
+|++|++++..|..|..+++|++|+|++|+ ++ .+| .+..+++|+.|++++|++++ ++ .+..+++|+.|++++|++
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC--
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCccc
Confidence 666666666566666666677777777776 44 444 56667777777777777764 33 566677777777777766
Q ss_pred cc
Q 002278 506 SG 507 (943)
Q Consensus 506 ~~ 507 (943)
.+
T Consensus 194 ~~ 195 (197)
T 4ezg_A 194 GG 195 (197)
T ss_dssp --
T ss_pred CC
Confidence 43
No 376
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.74 E-value=5.5e-19 Score=213.78 Aligned_cols=143 Identities=24% Similarity=0.314 Sum_probs=69.3
Q ss_pred CcccccCCCcCcEEEeeCCcccCcccccccccCccceeeccCCcCCCCCCCCCCCCCCccEEecCCCcCCCccCCCcccc
Q 002278 341 IPHNISSCTALNQFNVHGNRLSGAIPSSFRNLGSLTYLNLSRNNFKGKVPTELGRIINLDTLDLSVNNFSGSVPASIGDL 420 (943)
Q Consensus 341 ~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 420 (943)
.+..|..++.|+.|+|++|.|. .+|..+..+++|++|+|++|.|+ .+|..|+.+++|+.|+|++|.|+ .+|..|+.|
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 292 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC 292 (727)
T ss_dssp ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence 3444444444555555555544 23333334555555555555555 44555555555555555555555 445555555
Q ss_pred cccceeecccccccccCCccccCCCccceecccCccccccCChhhhcccc-cceecccCcccCCCCCC
Q 002278 421 EHLLTLNLSRNHLNGLLPAEFGNLRSIQTIDMSFNQLSGSIPAELGQLQN-IISLILNNNNLQGGIPD 487 (943)
Q Consensus 421 ~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~-L~~L~L~~N~l~~~~p~ 487 (943)
++|++|+|++|.|+ .+|..|++|++|+.|+|++|+|++.+|..+..+.. +..|+|++|.+++.+|.
T Consensus 293 ~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 293 FQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp TTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred CCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 55555555555554 34444555555555555555555555555443322 12245555555555543
No 377
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.74 E-value=1.7e-18 Score=173.91 Aligned_cols=131 Identities=24% Similarity=0.371 Sum_probs=84.2
Q ss_pred cEEEeeCCcccCcccccccccCccceeeccCCcCCCCCCC-CCCCCCCccEEecCCCcCCCccCCCcccccccceeeccc
Q 002278 352 NQFNVHGNRLSGAIPSSFRNLGSLTYLNLSRNNFKGKVPT-ELGRIINLDTLDLSVNNFSGSVPASIGDLEHLLTLNLSR 430 (943)
Q Consensus 352 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 430 (943)
+.+++++|.++ .+|..+.. +|+.|+|++|++++..+. .+..+++|+.|+|++|+|++..|..|.++++|++|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 56677777765 34443322 666677777766655443 366666666666666666666666666666666666666
Q ss_pred ccccccCCccccCCCccceecccCccccccCChhhhcccccceecccCcccCCCC
Q 002278 431 NHLNGLLPAEFGNLRSIQTIDMSFNQLSGSIPAELGQLQNIISLILNNNNLQGGI 485 (943)
Q Consensus 431 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 485 (943)
|+|++..+..|.++++|++|+|++|+|++..|..|..+++|+.|+|++|++++..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c 142 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC 142 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence 6666666666666666666666666666666666666666666666666666543
No 378
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.73 E-value=9.1e-18 Score=168.59 Aligned_cols=132 Identities=23% Similarity=0.362 Sum_probs=112.0
Q ss_pred eEEEccccccCCcCcccccCCCcCcEEEeeCCcccCcccc-cccccCccceeeccCCcCCCCCCCCCCCCCCccEEecCC
Q 002278 328 FELNLADNNLEGPIPHNISSCTALNQFNVHGNRLSGAIPS-SFRNLGSLTYLNLSRNNFKGKVPTELGRIINLDTLDLSV 406 (943)
Q Consensus 328 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~ 406 (943)
+.+++++|+++ .+|..+.. +|++|++++|+|++..+. .|..+++|++|+|++|++++..|..|..+++|+.|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 67889999987 45554433 888999999999877664 588899999999999999988888899999999999999
Q ss_pred CcCCCccCCCcccccccceeecccccccccCCccccCCCccceecccCccccccCC
Q 002278 407 NNFSGSVPASIGDLEHLLTLNLSRNHLNGLLPAEFGNLRSIQTIDMSFNQLSGSIP 462 (943)
Q Consensus 407 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 462 (943)
|+|++..+..|.++++|++|+|++|+|++..|..|..+++|+.|+|++|++++..+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 99998778888889999999999999998888889999999999999999986554
No 379
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.67 E-value=1.3e-16 Score=156.51 Aligned_cols=132 Identities=24% Similarity=0.260 Sum_probs=78.9
Q ss_pred CCCcEEeccCCCcC-CccchhccccccceEEEecCcccccCCCcccCCCCCCcEEEEeccccccccchhccccccceecc
Q 002278 86 GSLVHIELSDNSLY-GDIPFSISKLKQLEFLNLKNNQLTGPIPSTLTQIPNLKTLDLARNQLTGEIPRLIYWNEVLQYLG 164 (943)
Q Consensus 86 ~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 164 (943)
++|++|+|++|+++ +.+|..+..+++|++|+|++|.+++. ..|..+++|++|+|++|++++.+|..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 44555555555554 44455555555555555555555533 4555556666666666666554555555566666666
Q ss_pred ccCCccCCCCC-cccccccccceeeccceecccccC---CCCcCCCcccEEEeeccccc
Q 002278 165 LRGNALTGMLS-PDMCQLTGLWYFDVRGNNLTGTIP---DSIGNCTSFEILDISYNQIT 219 (943)
Q Consensus 165 L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~i~~~~~---~~l~~l~~L~~L~Ls~N~l~ 219 (943)
|++|+++++.. ..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 66666665532 456666777777777777764433 36677777777777777765
No 380
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.66 E-value=7.2e-16 Score=172.70 Aligned_cols=250 Identities=12% Similarity=0.084 Sum_probs=145.9
Q ss_pred CCccccccCCCcEEecCCCCCCCCCCcccCCCCCcceEEecCCCCCCCCCCCcCCCCcCcEEEcccCccccccccccCCc
Q 002278 245 IPEVIGLMQALAVLDLSENELVGPIPPILGNLSYTGKLYLHGNKLTGPIPPELGNMSKLSYLQLQNNQLVGTIPAELGKL 324 (943)
Q Consensus 245 ~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 324 (943)
...+|... +|+.+++..| ++.+....|.+ .+|+.+.+.+ .++.+...+|.++++|+.+++++|.++.+...+|. .
T Consensus 128 ~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~ 202 (401)
T 4fdw_A 128 PKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-Y 202 (401)
T ss_dssp CTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-T
T ss_pred hHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-e
Confidence 33444442 4555655544 44444455555 3466666654 44445555666666666666666666644444554 3
Q ss_pred ccceEEEccccccCCcCcccccCCCcCcEEEeeCCcccCcccccccccCccceeeccCCcCCCCCCCCCCCCCCccEEec
Q 002278 325 EQLFELNLADNNLEGPIPHNISSCTALNQFNVHGNRLSGAIPSSFRNLGSLTYLNLSRNNFKGKVPTELGRIINLDTLDL 404 (943)
Q Consensus 325 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 404 (943)
.+|+.+.|.++ ++.+...+|.++++|+.+++..| ++.+...+|.+ .+|+.+.| .+.++.+....|.++.+|+.+++
T Consensus 203 ~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l 278 (401)
T 4fdw_A 203 AGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTT 278 (401)
T ss_dssp CCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEE
T ss_pred cccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEe
Confidence 56666666533 55555566666666666666654 44455556665 56666666 33444455556666666666666
Q ss_pred CCCcCC-----CccCCCcccccccceeecccccccccCCccccCCCccceecccCccccccCChhhhcccccceecccCc
Q 002278 405 SVNNFS-----GSVPASIGDLEHLLTLNLSRNHLNGLLPAEFGNLRSIQTIDMSFNQLSGSIPAELGQLQNIISLILNNN 479 (943)
Q Consensus 405 s~N~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 479 (943)
.+|.+. ...+..|.++++|+.++|. |.++.+....|.++++|+.++|..| ++..-+..|.++ +|+.|++++|
T Consensus 279 ~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 279 YGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp ESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCS
T ss_pred CCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCC
Confidence 665543 2445566677777777776 3466566666777777777777544 554455666666 7777777777
Q ss_pred ccCCCCCCcCcccc-CCcccccCCcccc
Q 002278 480 NLQGGIPDQLSNCF-SLSNLNVSYNNLS 506 (943)
Q Consensus 480 ~l~~~~p~~~~~l~-~L~~L~ls~N~l~ 506 (943)
.+....+..|.+++ .++.|.+..|.+.
T Consensus 356 ~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 356 TPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp SCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred CCcccccccccCCCCCccEEEeCHHHHH
Confidence 66655555566653 5566666555443
No 381
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.66 E-value=1.3e-15 Score=170.52 Aligned_cols=248 Identities=10% Similarity=0.103 Sum_probs=149.2
Q ss_pred CCCCcCCCcccEEEeecccccCcCCCCCCcceEeEEEecCccccccCCccccccCCCcEEecCCCCCCCCCCcccCCCCC
Q 002278 199 PDSIGNCTSFEILDISYNQITGEIPYNIGFLQVATLSLQGNKLTGKIPEVIGLMQALAVLDLSENELVGPIPPILGNLSY 278 (943)
Q Consensus 199 ~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 278 (943)
..+|.++ +|+.+.+..| ++......|...+|+.+.+.+ .++.+...+|..+.+|+.++|++|.+..+....|. .++
T Consensus 129 ~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~ 204 (401)
T 4fdw_A 129 KDAFRNS-QIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAG 204 (401)
T ss_dssp TTTTTTC-CCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCC
T ss_pred HhhcccC-CccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecc
Confidence 3344442 4555554443 332222223223344444443 34445556677777777777777777765556665 467
Q ss_pred cceEEecCCCCCCCCCCCcCCCCcCcEEEcccCccccccccccCCcccceEEEccccccCCcCcccccCCCcCcEEEeeC
Q 002278 279 TGKLYLHGNKLTGPIPPELGNMSKLSYLQLQNNQLVGTIPAELGKLEQLFELNLADNNLEGPIPHNISSCTALNQFNVHG 358 (943)
Q Consensus 279 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 358 (943)
|+.+.|.++ ++.+...+|.++++|+.+++.+| ++.+...+|.+ .+|+.+.| .+.++.+...+|.+|++|+.+.+.+
T Consensus 205 L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~ 280 (401)
T 4fdw_A 205 IEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYG 280 (401)
T ss_dssp CSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEES
T ss_pred cCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCC
Confidence 777777643 66566667777777777777764 44455566666 66777777 4556656667777777777777777
Q ss_pred Cccc-----CcccccccccCccceeeccCCcCCCCCCCCCCCCCCccEEecCCCcCCCccCCCcccccccceeecccccc
Q 002278 359 NRLS-----GAIPSSFRNLGSLTYLNLSRNNFKGKVPTELGRIINLDTLDLSVNNFSGSVPASIGDLEHLLTLNLSRNHL 433 (943)
Q Consensus 359 N~l~-----~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 433 (943)
|.+. .+.+.+|.++++|+.+.|. +.++.+....|.++.+|+.++|..| ++.....+|.++ +|+.|++++|.+
T Consensus 281 ~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 281 STFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp SCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSC
T ss_pred ccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCC
Confidence 6654 3555666667777777666 3355455566666666666666444 444445566666 666666666666
Q ss_pred cccCCccccCCC-ccceecccCccc
Q 002278 434 NGLLPAEFGNLR-SIQTIDMSFNQL 457 (943)
Q Consensus 434 ~~~~p~~~~~l~-~L~~L~Ls~N~l 457 (943)
....+..|.+++ .++.|++..|.+
T Consensus 358 ~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 358 PQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp CBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred cccccccccCCCCCccEEEeCHHHH
Confidence 655555566553 555665555544
No 382
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.66 E-value=2.3e-16 Score=154.77 Aligned_cols=132 Identities=20% Similarity=0.260 Sum_probs=74.5
Q ss_pred CcCcEEEeeCCccc-CcccccccccCccceeeccCCcCCCCCCCCCCCCCCccEEecCCCcCCCccCCCcccccccceee
Q 002278 349 TALNQFNVHGNRLS-GAIPSSFRNLGSLTYLNLSRNNFKGKVPTELGRIINLDTLDLSVNNFSGSVPASIGDLEHLLTLN 427 (943)
Q Consensus 349 ~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 427 (943)
++|+.|++++|.++ +.+|..+..+++|+.|+|++|.+++. ..+..+++|+.|++++|++++.+|..+..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 44555555555554 34455555555555555555555533 4555555666666666666544555555566666666
Q ss_pred cccccccccCC-ccccCCCccceecccCccccccCC---hhhhcccccceecccCcccC
Q 002278 428 LSRNHLNGLLP-AEFGNLRSIQTIDMSFNQLSGSIP---AELGQLQNIISLILNNNNLQ 482 (943)
Q Consensus 428 Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~L~~N~l~ 482 (943)
|++|++++..+ ..|..+++|+.|++++|++++..+ ..+..+++|+.|++++|.+.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 66666654321 456666666666666666663333 25556666666666666655
No 383
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.65 E-value=2.8e-16 Score=157.60 Aligned_cols=127 Identities=25% Similarity=0.386 Sum_probs=90.8
Q ss_pred ceeeccCCcCCCCCCCCCCCCCCccEEecCCCcCCCccCCCcccccccceeecccccccccCCccccCCCccceecccCc
Q 002278 376 TYLNLSRNNFKGKVPTELGRIINLDTLDLSVNNFSGSVPASIGDLEHLLTLNLSRNHLNGLLPAEFGNLRSIQTIDMSFN 455 (943)
Q Consensus 376 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 455 (943)
+.+++++|.++ .+|..+. .+|+.|+|++|.|+ .+|..|..+++|+.|+|++|+|+++.+..|.++++|++|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 45667777776 4555443 46777777777777 56667777777777777777777777777777777777777777
Q ss_pred cccccCChhhhcccccceecccCcccCCCCCCcCccccCCcccccCCcccc
Q 002278 456 QLSGSIPAELGQLQNIISLILNNNNLQGGIPDQLSNCFSLSNLNVSYNNLS 506 (943)
Q Consensus 456 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~ 506 (943)
+|++..|..|..+++|+.|+|++|+|++..+..|..+++|+.|++++|++.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 777666667777777777777777777665556777777777776666554
No 384
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.65 E-value=3.4e-15 Score=168.04 Aligned_cols=67 Identities=15% Similarity=0.195 Sum_probs=33.8
Q ss_pred ccccCCCCccCCCCCcEEeccCCCcCCccchhccccccceEEEecCcccccCCCcccCCCCCCcEEEEe
Q 002278 74 LTGQIPDEIGNCGSLVHIELSDNSLYGDIPFSISKLKQLEFLNLKNNQLTGPIPSTLTQIPNLKTLDLA 142 (943)
Q Consensus 74 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 142 (943)
++.....+|.++.+|+.+.|..+ ++.....+|.++++|+.++|.++ ++.+...+|.++++|+.+.+.
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p 125 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLP 125 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhccc
Confidence 44333445666666666666532 44333445555566665555433 333444455555555554443
No 385
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.64 E-value=4.6e-16 Score=156.03 Aligned_cols=126 Identities=26% Similarity=0.301 Sum_probs=80.8
Q ss_pred EEEcCCCCCccccCCCcCCCCCCCEEEeeCCcccccCCCCccCCCCCcEEeccCCCcCCccchhccccccceEEEecCcc
Q 002278 42 SLNLSSLNLGGEISPSIGDLRNLQSIDFQGNKLTGQIPDEIGNCGSLVHIELSDNSLYGDIPFSISKLKQLEFLNLKNNQ 121 (943)
Q Consensus 42 ~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~ 121 (943)
.+++++|+++ .+|..+. ++|++|+|++|+|+ .+|..|.++++|++|+|++|+|++..+.+|.++++|++|+|++|+
T Consensus 14 ~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 3555666666 5565543 46777777777776 566667777777777777777776555667777777777777777
Q ss_pred cccCCCcccCCCCCCcEEEEeccccccccchhccccccceeccccCCccC
Q 002278 122 LTGPIPSTLTQIPNLKTLDLARNQLTGEIPRLIYWNEVLQYLGLRGNALT 171 (943)
Q Consensus 122 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~ 171 (943)
|++..+..|..+++|++|+|++|+|+...+..|..+++|++|+|++|.+.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 77666666666677777766666666444444555555555555555443
No 386
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.64 E-value=5.5e-16 Score=153.45 Aligned_cols=134 Identities=20% Similarity=0.254 Sum_probs=94.9
Q ss_pred cceeeccCCcCCCCCCCCCCCCCCccEEecCCCcCCCccCCCcccccccceeecccccccccCCccccCCCccceecccC
Q 002278 375 LTYLNLSRNNFKGKVPTELGRIINLDTLDLSVNNFSGSVPASIGDLEHLLTLNLSRNHLNGLLPAEFGNLRSIQTIDMSF 454 (943)
Q Consensus 375 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 454 (943)
.+.+++++|+++ .+|..+. ++|+.|++++|++++..+..|..+++|++|+|++|++++..+..|.++++|+.|+|++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 456666666666 3443332 4677777777777765556667777777777777777766666677777777777777
Q ss_pred ccccccCChhhhcccccceecccCcccCCCCCCcCccccCCcccccCCccccccCCC
Q 002278 455 NQLSGSIPAELGQLQNIISLILNNNNLQGGIPDQLSNCFSLSNLNVSYNNLSGIIPP 511 (943)
Q Consensus 455 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~ 511 (943)
|+|++..+..|..+++|+.|+|++|++++..+..+..+++|+.|++++|++++.+|.
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 142 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 142 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCcc
Confidence 777765556677777888888888888766565567778888888888887776553
No 387
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.64 E-value=7.6e-16 Score=152.44 Aligned_cols=132 Identities=23% Similarity=0.279 Sum_probs=101.3
Q ss_pred CCcceeEecCCCCcEEEEEcCCCCCccccCCCcCCCCCCCEEEeeCCcccccCCCCccCCCCCcEEeccCCCcCCccchh
Q 002278 26 CSWRGVFCDNSSLSVVSLNLSSLNLGGEISPSIGDLRNLQSIDFQGNKLTGQIPDEIGNCGSLVHIELSDNSLYGDIPFS 105 (943)
Q Consensus 26 c~w~gv~c~~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 105 (943)
|+|.+|.|++. +++ .+|..+. ++|++|+|++|++++..+..|..+++|++|+|++|++++..+..
T Consensus 7 C~~~~l~~~~~------------~l~-~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 71 (177)
T 2o6r_A 7 CSGTEIRCNSK------------GLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGV 71 (177)
T ss_dssp EETTEEECCSS------------CCS-SCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT
T ss_pred eCCCEEEecCC------------CCc-cCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhH
Confidence 57887777543 444 4554443 68899999999998666667888899999999999988666666
Q ss_pred ccccccceEEEecCcccccCCCcccCCCCCCcEEEEeccccccccchhccccccceeccccCCccCC
Q 002278 106 ISKLKQLEFLNLKNNQLTGPIPSTLTQIPNLKTLDLARNQLTGEIPRLIYWNEVLQYLGLRGNALTG 172 (943)
Q Consensus 106 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 172 (943)
|+.+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..+..+++|++|+|++|.+.+
T Consensus 72 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 72 FDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 7888888888888888887777778888888888888888886665556667777777777777664
No 388
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.63 E-value=1.8e-16 Score=152.16 Aligned_cols=110 Identities=19% Similarity=0.279 Sum_probs=51.3
Q ss_pred CCCCEEEeeCCccc-ccCCCCccCCCCCcEEeccCCCcCCccchhccccccceEEEecCcccccCCCcccCCCCCCcEEE
Q 002278 62 RNLQSIDFQGNKLT-GQIPDEIGNCGSLVHIELSDNSLYGDIPFSISKLKQLEFLNLKNNQLTGPIPSTLTQIPNLKTLD 140 (943)
Q Consensus 62 ~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 140 (943)
++|++|++++|+++ +.+|..+..+++|++|+|++|++++. ..|+.+++|++|+|++|++++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 34555555555554 44444445555555555555555432 3444455555555555555443444444444555555
Q ss_pred Eeccccccc-cchhccccccceeccccCCccCCC
Q 002278 141 LARNQLTGE-IPRLIYWNEVLQYLGLRGNALTGM 173 (943)
Q Consensus 141 Ls~N~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~ 173 (943)
|++|++++. .+..+..+++|++|++++|.++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~ 128 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNL 128 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGS
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccch
Confidence 555544431 123344444444444444444433
No 389
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.62 E-value=5.7e-15 Score=166.24 Aligned_cols=335 Identities=11% Similarity=0.033 Sum_probs=211.7
Q ss_pred ccccCCCcccCCCCCCcEEEEeccccccccchhccccccceeccccCCccCCCCCcccccccccceeeccceecccccCC
Q 002278 121 QLTGPIPSTLTQIPNLKTLDLARNQLTGEIPRLIYWNEVLQYLGLRGNALTGMLSPDMCQLTGLWYFDVRGNNLTGTIPD 200 (943)
Q Consensus 121 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~ 200 (943)
.++.+...+|.++++|+.+.|..+ ++.....+|.++.+|+.++|.++ ++.+....|.++.+|+.+.+..+ +..+...
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~ 134 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVE 134 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred eEeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecce
Confidence 355566677888888888888644 66555667777777777777654 66666666777777766665543 3323444
Q ss_pred CCcCCCcccEEEeecccccCcCCCCCCcceEeEEEecCccccccCCccccccCCCcEEecCCCCCCCCCCcccCCCCCcc
Q 002278 201 SIGNCTSFEILDISYNQITGEIPYNIGFLQVATLSLQGNKLTGKIPEVIGLMQALAVLDLSENELVGPIPPILGNLSYTG 280 (943)
Q Consensus 201 ~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 280 (943)
+|.++..++..... .+......+|..+++|+.+.+.++. ..+....|.+..+|+
T Consensus 135 aF~~~~~~~~~~~~-------------------------~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~ 188 (394)
T 4fs7_A 135 AFKGCDFKEITIPE-------------------------GVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLK 188 (394)
T ss_dssp TTTTCCCSEEECCT-------------------------TCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCC
T ss_pred eeecccccccccCc-------------------------cccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCce
Confidence 55544332222111 1111334566777778888876553 335556777777788
Q ss_pred eEEecCCCCCCCCCCCcCCCCcCcEEEcccCccccccccccCCcccceEEEccccccCCcCcccccCCCcCcEEEeeCCc
Q 002278 281 KLYLHGNKLTGPIPPELGNMSKLSYLQLQNNQLVGTIPAELGKLEQLFELNLADNNLEGPIPHNISSCTALNQFNVHGNR 360 (943)
Q Consensus 281 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~ 360 (943)
.+.+..| ++.+....|.++..|+.+.+.++... +...+....+|+.+.+..+ ++.+....|.++..|+.+.+..+.
T Consensus 189 ~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~ 264 (394)
T 4fs7_A 189 SIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNK 264 (394)
T ss_dssp BCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTT
T ss_pred EEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCc
Confidence 7777665 44455567777777877777766543 2333344466777777543 344556677777888888777765
Q ss_pred ccCcccccccccCccceeeccCCcCCCCCCCCCCCCCCccEEecCCCcCCCccCCCcccccccceeecccccccccCCcc
Q 002278 361 LSGAIPSSFRNLGSLTYLNLSRNNFKGKVPTELGRIINLDTLDLSVNNFSGSVPASIGDLEHLLTLNLSRNHLNGLLPAE 440 (943)
Q Consensus 361 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~ 440 (943)
.. +....|..+..++.+.+..+.+. ...|....+|+.+.+..+ ++.+...+|.++.+|+.++|.++ ++.+....
T Consensus 265 ~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~a 338 (394)
T 4fs7_A 265 LR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRS 338 (394)
T ss_dssp CE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTT
T ss_pred ce-eeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHh
Confidence 54 56667777777777777665432 345667777777777654 44445566777777777777644 66566677
Q ss_pred ccCCCccceecccCccccccCChhhhcccccceecccCcccCCCCCCcCccccCCcc
Q 002278 441 FGNLRSIQTIDMSFNQLSGSIPAELGQLQNIISLILNNNNLQGGIPDQLSNCFSLSN 497 (943)
Q Consensus 441 ~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 497 (943)
|.++++|+.+++..| ++..-...|.++.+|+.+++..| ++ .+...|.++++|+.
T Consensus 339 F~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 339 FRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKW 392 (394)
T ss_dssp TTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEE
T ss_pred ccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcE
Confidence 777777777777766 55455567777777777777654 33 23445666666654
No 390
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.62 E-value=4.7e-16 Score=149.13 Aligned_cols=127 Identities=18% Similarity=0.254 Sum_probs=62.3
Q ss_pred CcCcEEEeeCCccc-CcccccccccCccceeeccCCcCCCCCCCCCCCCCCccEEecCCCcCCCccCCCcccccccceee
Q 002278 349 TALNQFNVHGNRLS-GAIPSSFRNLGSLTYLNLSRNNFKGKVPTELGRIINLDTLDLSVNNFSGSVPASIGDLEHLLTLN 427 (943)
Q Consensus 349 ~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 427 (943)
++|+.|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 34444444444444 34444444445555555555555433 3444555555555555555544444444455555555
Q ss_pred ccccccccc-CCccccCCCccceecccCccccccCC---hhhhcccccceeccc
Q 002278 428 LSRNHLNGL-LPAEFGNLRSIQTIDMSFNQLSGSIP---AELGQLQNIISLILN 477 (943)
Q Consensus 428 Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~L~ 477 (943)
+++|++++. .+..+..+++|++|++++|++++..+ ..+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 555555542 22445555555555555555553333 245555555555544
No 391
>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A
Probab=99.62 E-value=1.6e-16 Score=173.25 Aligned_cols=140 Identities=13% Similarity=0.062 Sum_probs=102.9
Q ss_pred hhccccceEEeeeceEEEEEEEecCCceEEEEEecccCc--------------ccHH--------HHHHHHHHHhcCCCC
Q 002278 615 TENLSEKYIVGYGASSTVYKCALKNSRPIAVKKLYNQYP--------------HNLR--------EFETELETIGSIRHR 672 (943)
Q Consensus 615 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~--------------~~~~--------~~~~E~~~l~~l~h~ 672 (943)
..-|++...||+|+||.||+|...+|+.||||+++.... .... ...+|...+.++.+.
T Consensus 94 g~iY~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL~rL~~~ 173 (397)
T 4gyi_A 94 KDVYSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFMKALYEE 173 (397)
T ss_dssp TSCSEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCEEEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHhc
Confidence 334888999999999999999999999999998643210 0011 123567777777555
Q ss_pred CcceeeeEEecCCcceEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEEC
Q 002278 673 NIVSLHGYALSPYGNLLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILID 752 (943)
Q Consensus 673 niv~l~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~ 752 (943)
++.....+.. ...++||||++|++|.++... +....++.|++.+|.|||+. |||||||||.|||++
T Consensus 174 gv~vp~p~~~--~~~~LVME~i~G~~L~~l~~~---------~~~~~l~~qll~~l~~lH~~---gIVHrDLKp~NILl~ 239 (397)
T 4gyi_A 174 GFPVPEPIAQ--SRHTIVMSLVDALPMRQVSSV---------PDPASLYADLIALILRLAKH---GLIHGDFNEFNILIR 239 (397)
T ss_dssp TCSCCCEEEE--ETTEEEEECCSCEEGGGCCCC---------SCHHHHHHHHHHHHHHHHHT---TEECSCCSTTSEEEE
T ss_pred CCCCCeeeec--cCceEEEEecCCccHhhhccc---------HHHHHHHHHHHHHHHHHHHC---CCcCCCCCHHHEEEe
Confidence 4432222222 245899999999888776431 12356889999999999998 999999999999998
Q ss_pred CCC----------ceeeccccccccc
Q 002278 753 ENF----------DAHLSDFGIARCI 768 (943)
Q Consensus 753 ~~~----------~~kl~DFGla~~~ 768 (943)
+++ .+.|+||+-+...
T Consensus 240 ~dgd~~d~~~~~~~~~iID~~Q~V~~ 265 (397)
T 4gyi_A 240 EEKDAEDPSSITLTPIIIXFPQMVSM 265 (397)
T ss_dssp EEECSSCTTSEEEEEEECCCTTCEET
T ss_pred CCCCcccccccccceEEEEeCCcccC
Confidence 776 3899999987643
No 392
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.57 E-value=2.5e-17 Score=166.45 Aligned_cols=155 Identities=21% Similarity=0.249 Sum_probs=117.6
Q ss_pred cCCCCCCCEEEeeCCcccccCCC------CccCCCCCcEEeccCCCcCCccchhccccccceEEEecCcccccCCCcccC
Q 002278 58 IGDLRNLQSIDFQGNKLTGQIPD------EIGNCGSLVHIELSDNSLYGDIPFSISKLKQLEFLNLKNNQLTGPIPSTLT 131 (943)
Q Consensus 58 l~~l~~L~~L~Ls~n~l~~~~p~------~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 131 (943)
+.....++.++++.+.+++.+|. .|..+++|++|+|++|++++ +| .+..+++|++|+|++|+++ .+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 34455677777777777776666 78888888888888888874 66 7888888888888888887 5677777
Q ss_pred CCCCCcEEEEeccccccccchhccccccceeccccCCccCCCCC-cccccccccceeeccceecccccCCC---------
Q 002278 132 QIPNLKTLDLARNQLTGEIPRLIYWNEVLQYLGLRGNALTGMLS-PDMCQLTGLWYFDVRGNNLTGTIPDS--------- 201 (943)
Q Consensus 132 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~i~~~~~~~--------- 201 (943)
.+++|++|+|++|++++ +| .+..+++|++|+|++|+++++.+ ..+..+++|++|++++|.+++..|..
T Consensus 91 ~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~ 168 (198)
T 1ds9_A 91 VADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIE 168 (198)
T ss_dssp HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHH
T ss_pred cCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHH
Confidence 77888888888888875 44 57777888888888888877644 46778888888888888887665553
Q ss_pred -CcCCCcccEEEeeccccc
Q 002278 202 -IGNCTSFEILDISYNQIT 219 (943)
Q Consensus 202 -l~~l~~L~~L~Ls~N~l~ 219 (943)
+..+++|+.|| +|.++
T Consensus 169 ~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 169 VVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHCSSCSEEC--CGGGT
T ss_pred HHHhCCCcEEEC--CcccC
Confidence 77788888887 66665
No 393
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.57 E-value=1.6e-15 Score=149.89 Aligned_cols=133 Identities=17% Similarity=0.186 Sum_probs=76.6
Q ss_pred ccccCccceeeccCCcCCCCCCCCCCCCC-CccEEecCCCcCCCccCCCcccccccceeecccccccccCCccccCCCcc
Q 002278 369 FRNLGSLTYLNLSRNNFKGKVPTELGRII-NLDTLDLSVNNFSGSVPASIGDLEHLLTLNLSRNHLNGLLPAEFGNLRSI 447 (943)
Q Consensus 369 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L 447 (943)
+.++.+|+.|++++|+++. +|. +..+. +|+.|++++|.|++. ..|..+++|++|+|++|+|++..+..|..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 3444555555555555552 232 33333 566666666665532 455566666666666666665444445666666
Q ss_pred ceecccCccccccCCh--hhhcccccceecccCcccCCCCCCc----CccccCCcccccCCccccc
Q 002278 448 QTIDMSFNQLSGSIPA--ELGQLQNIISLILNNNNLQGGIPDQ----LSNCFSLSNLNVSYNNLSG 507 (943)
Q Consensus 448 ~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~p~~----~~~l~~L~~L~ls~N~l~~ 507 (943)
+.|+|++|+|+ .+|. .+..+++|+.|++++|+++ .+|.. +..+++|+.||+++|.+..
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 66666666664 4444 5666666666666666665 34443 5666777777777776653
No 394
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.55 E-value=6.3e-15 Score=145.58 Aligned_cols=132 Identities=14% Similarity=0.158 Sum_probs=91.4
Q ss_pred ccCCCcCcEEEeeCCcccCcccccccccC-ccceeeccCCcCCCCCCCCCCCCCCccEEecCCCcCCCccCCCccccccc
Q 002278 345 ISSCTALNQFNVHGNRLSGAIPSSFRNLG-SLTYLNLSRNNFKGKVPTELGRIINLDTLDLSVNNFSGSVPASIGDLEHL 423 (943)
Q Consensus 345 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 423 (943)
+.++.+|+.|++++|+++.. +. +..+. +|+.|+|++|.+++. ..+..+++|+.|++++|.|++..+..|..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 44555666666666666532 33 33333 777777777777654 567777778888888888775444445778888
Q ss_pred ceeecccccccccCCc--cccCCCccceecccCccccccCChh----hhcccccceecccCcccC
Q 002278 424 LTLNLSRNHLNGLLPA--EFGNLRSIQTIDMSFNQLSGSIPAE----LGQLQNIISLILNNNNLQ 482 (943)
Q Consensus 424 ~~L~Ls~N~l~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~~----~~~l~~L~~L~L~~N~l~ 482 (943)
++|+|++|+|+. +|. .+..+++|+.|++++|+++ .+|.. +..+++|+.|++++|.+.
T Consensus 91 ~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 91 TELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 888888888863 444 6778888888888888887 55654 788888888888888765
No 395
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.53 E-value=7.7e-17 Score=162.80 Aligned_cols=111 Identities=23% Similarity=0.294 Sum_probs=46.0
Q ss_pred cccCCCcCcEEEeeCCcccCcccccccccCccceeeccCCcCCCCCCCCCCCCCCccEEecCCCcCCCccCCCccccccc
Q 002278 344 NISSCTALNQFNVHGNRLSGAIPSSFRNLGSLTYLNLSRNNFKGKVPTELGRIINLDTLDLSVNNFSGSVPASIGDLEHL 423 (943)
Q Consensus 344 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 423 (943)
.+..+++|++|++++|.+++ +| .+..+++|+.|++++|+++ .+|..+..+++|+.|++++|++++ +| .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence 34444444444444444443 22 3444444444444444444 233333333344444444444442 22 24444444
Q ss_pred ceeecccccccccCC-ccccCCCccceecccCccccc
Q 002278 424 LTLNLSRNHLNGLLP-AEFGNLRSIQTIDMSFNQLSG 459 (943)
Q Consensus 424 ~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~ 459 (943)
+.|+|++|++++..+ ..+..+++|++|++++|++++
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 444444444443211 234444444444444444443
No 396
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.48 E-value=5e-14 Score=138.06 Aligned_cols=105 Identities=24% Similarity=0.306 Sum_probs=55.2
Q ss_pred cceeeccCCcCCCCCCCCCCCCCCccEEecCCCcCCCccCCCcccccccceeecccccccccCCccccCCCccceecccC
Q 002278 375 LTYLNLSRNNFKGKVPTELGRIINLDTLDLSVNNFSGSVPASIGDLEHLLTLNLSRNHLNGLLPAEFGNLRSIQTIDMSF 454 (943)
Q Consensus 375 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 454 (943)
.+.+++++|+++ .+|..+. .+|+.|+|++|+|++..|..|.++++|++|+|++|+|+++.+..|.++++|+.|+|++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 345666666665 3444332 4555555555555555455555555555555555555554444455555555555555
Q ss_pred ccccccCChhhhcccccceecccCcccC
Q 002278 455 NQLSGSIPAELGQLQNIISLILNNNNLQ 482 (943)
Q Consensus 455 N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 482 (943)
|+|++..+..|..+++|+.|+|++|+++
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 5555433334555555555555555444
No 397
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.46 E-value=1.3e-13 Score=134.95 Aligned_cols=107 Identities=26% Similarity=0.313 Sum_probs=53.6
Q ss_pred cEEecCCCcCCCccCCCcccccccceeecccccccccCCccccCCCccceecccCccccccCChhhhcccccceecccCc
Q 002278 400 DTLDLSVNNFSGSVPASIGDLEHLLTLNLSRNHLNGLLPAEFGNLRSIQTIDMSFNQLSGSIPAELGQLQNIISLILNNN 479 (943)
Q Consensus 400 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N 479 (943)
+.+++++|.++ .+|..+. ++|+.|+|++|+|+++.|..|.++++|++|+|++|+|++..|..|..+++|+.|+|++|
T Consensus 12 ~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 44555555554 2343332 44555555555555544555555555555555555555433344455555555555555
Q ss_pred ccCCCCCCcCccccCCcccccCCccccccC
Q 002278 480 NLQGGIPDQLSNCFSLSNLNVSYNNLSGII 509 (943)
Q Consensus 480 ~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~ 509 (943)
+|++..+..|..+++|+.|+|++|++++..
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 555444444555555555555555554443
No 398
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.46 E-value=9.8e-14 Score=136.39 Aligned_cols=104 Identities=21% Similarity=0.319 Sum_probs=57.0
Q ss_pred ceeeccCCcCCCCCCCCCCCCCCccEEecCCCcCCCccCCCcccccccceeecccccccccCCccccCCCccceecccCc
Q 002278 376 TYLNLSRNNFKGKVPTELGRIINLDTLDLSVNNFSGSVPASIGDLEHLLTLNLSRNHLNGLLPAEFGNLRSIQTIDMSFN 455 (943)
Q Consensus 376 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N 455 (943)
+.+++++|+++ .+|..+. .+|+.|+|++|+|++..|..|.++++|+.|+|++|+|+++.+..|.++++|+.|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 45666666665 4454443 45566666666665555555555555555555555555544444555555555555555
Q ss_pred cccccCChhhhcccccceecccCcccC
Q 002278 456 QLSGSIPAELGQLQNIISLILNNNNLQ 482 (943)
Q Consensus 456 ~l~~~~p~~~~~l~~L~~L~L~~N~l~ 482 (943)
+|++..+..|..+++|+.|+|++|++.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 555333333555555555555555554
No 399
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.45 E-value=2.4e-13 Score=133.64 Aligned_cols=105 Identities=20% Similarity=0.237 Sum_probs=91.9
Q ss_pred EEEEcCCCCCccccCCCcCCCCCCCEEEeeCCcccccCCCCccCCCCCcEEeccCCCcCCccchhccccccceEEEecCc
Q 002278 41 VSLNLSSLNLGGEISPSIGDLRNLQSIDFQGNKLTGQIPDEIGNCGSLVHIELSDNSLYGDIPFSISKLKQLEFLNLKNN 120 (943)
Q Consensus 41 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n 120 (943)
+.+++++|+++ .+|..+. ++|++|+|++|+|++..|..|.++++|++|+|++|+|++..+..|.++++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 36899999997 7888775 88999999999999888889999999999999999999665666889999999999999
Q ss_pred ccccCCCcccCCCCCCcEEEEecccccc
Q 002278 121 QLTGPIPSTLTQIPNLKTLDLARNQLTG 148 (943)
Q Consensus 121 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 148 (943)
+|++..+..|..+++|++|+|++|.+..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccc
Confidence 9997766679999999999999999884
No 400
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.44 E-value=2.4e-12 Score=144.67 Aligned_cols=132 Identities=14% Similarity=0.243 Sum_probs=60.3
Q ss_pred ccccCCCcCcEEEeeCCcccCcccccccccCccceeeccCCcCCCCCCCCCCCCCCccEEecCCCcCCCccCCCcccccc
Q 002278 343 HNISSCTALNQFNVHGNRLSGAIPSSFRNLGSLTYLNLSRNNFKGKVPTELGRIINLDTLDLSVNNFSGSVPASIGDLEH 422 (943)
Q Consensus 343 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 422 (943)
.+|.++..|+.+.+..+..+ +...+|.++++|+.+.+. +.++.+....|.++.+|+.++|..+ ++.+...+|.++.+
T Consensus 259 ~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred ceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence 34444444444444433322 334444555555555543 2233333444555555555555433 33233445666666
Q ss_pred cceeecccccccccCCccccCCCccceecccCccccccCChhhhcccccceecccCccc
Q 002278 423 LLTLNLSRNHLNGLLPAEFGNLRSIQTIDMSFNQLSGSIPAELGQLQNIISLILNNNNL 481 (943)
Q Consensus 423 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 481 (943)
|+.+.|..+ ++.+....|.++++|+.+++.+|.... ..+....+|+.+.+..|.+
T Consensus 336 L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 336 LERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred CCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence 666666433 444445566666666666666654431 3445555566665555543
No 401
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.44 E-value=1.6e-12 Score=146.21 Aligned_cols=157 Identities=13% Similarity=0.150 Sum_probs=105.8
Q ss_pred CCcCCCC-CCCEEEeeCCcccccCCCCccCCCCCcEEeccCCC---cCCccchhccccccceEEEecCcccccCCCcccC
Q 002278 56 PSIGDLR-NLQSIDFQGNKLTGQIPDEIGNCGSLVHIELSDNS---LYGDIPFSISKLKQLEFLNLKNNQLTGPIPSTLT 131 (943)
Q Consensus 56 ~~l~~l~-~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~---l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 131 (943)
.+|.++. .|+.+.|..+ ++.....+|.++++|+.+.++.|. ++.....+|.++.+|+.+.+..+ ++.+....|.
T Consensus 57 ~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~ 134 (394)
T 4gt6_A 57 RVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFH 134 (394)
T ss_dssp TTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTT
T ss_pred hhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhh
Confidence 3577764 5888888754 665566778888888888887764 55444567888888887777655 4446667788
Q ss_pred CCCCCcEEEEeccccccccchhccccccceeccccCCccCCCCCcccccccccceeeccceecccccCCCCcCCCcccEE
Q 002278 132 QIPNLKTLDLARNQLTGEIPRLIYWNEVLQYLGLRGNALTGMLSPDMCQLTGLWYFDVRGNNLTGTIPDSIGNCTSFEIL 211 (943)
Q Consensus 132 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L 211 (943)
.+.+|+.+.+..+. .......|..+..|+.+.+.++ ++.+....|.. .+|+.+.+..+-.. .....|.++.+|+..
T Consensus 135 ~c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~~l~~~ 210 (394)
T 4gt6_A 135 HCEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSECFALSTI 210 (394)
T ss_dssp TCTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCTTCCEE
T ss_pred hhccccccccccee-eeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhhcccccee
Confidence 88888888886543 3355667777778888877654 55566666654 56777777654332 445667777777777
Q ss_pred Eeecccc
Q 002278 212 DISYNQI 218 (943)
Q Consensus 212 ~Ls~N~l 218 (943)
....+..
T Consensus 211 ~~~~~~~ 217 (394)
T 4gt6_A 211 TSDSESY 217 (394)
T ss_dssp EECCSSS
T ss_pred ccccccc
Confidence 6665544
No 402
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.38 E-value=9e-13 Score=145.63 Aligned_cols=112 Identities=20% Similarity=0.203 Sum_probs=96.8
Q ss_pred CCC--CCcceeEecCCCCcEEEEEcCCCCCccccCCCcCCCCCCCEEEeeC-CcccccCCCCccCCCCCcEEeccCCCcC
Q 002278 23 SDF--CSWRGVFCDNSSLSVVSLNLSSLNLGGEISPSIGDLRNLQSIDFQG-NKLTGQIPDEIGNCGSLVHIELSDNSLY 99 (943)
Q Consensus 23 ~~~--c~w~gv~c~~~~~~v~~L~l~~~~~~~~~~~~l~~l~~L~~L~Ls~-n~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 99 (943)
..| |.|.+|.|.+. |+++ .+|. |..+++|++|+|++ |+|++..|..|.+|++|++|+|++|+|+
T Consensus 3 ~~c~~C~~~~v~~~~~-----------n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~ 69 (347)
T 2ifg_A 3 DACCPHGSSGLRCTRD-----------GALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR 69 (347)
T ss_dssp SSSCCSSSSCEECCSS-----------CCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC
T ss_pred CcCccccCCEEEcCCC-----------CCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccc
Confidence 356 88888877542 1566 5888 99999999999996 9999777788999999999999999999
Q ss_pred CccchhccccccceEEEecCcccccCCCcccCCCCCCcEEEEecccccc
Q 002278 100 GDIPFSISKLKQLEFLNLKNNQLTGPIPSTLTQIPNLKTLDLARNQLTG 148 (943)
Q Consensus 100 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 148 (943)
+..|..|++|++|++|+|++|+|++..+..|..++ |+.|+|++|.+..
T Consensus 70 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 70 FVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp EECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred eeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 88888999999999999999999977777777776 9999999999874
No 403
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.30 E-value=5.3e-14 Score=155.97 Aligned_cols=158 Identities=18% Similarity=0.174 Sum_probs=83.3
Q ss_pred CCCCEEEeeCCcccccCCCCccC-----CCCCcEEeccCCCcCCccchhcc-ccccceEEEecCcccccCCCccc-----
Q 002278 62 RNLQSIDFQGNKLTGQIPDEIGN-----CGSLVHIELSDNSLYGDIPFSIS-KLKQLEFLNLKNNQLTGPIPSTL----- 130 (943)
Q Consensus 62 ~~L~~L~Ls~n~l~~~~p~~~~~-----l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~Ls~n~l~~~~~~~~----- 130 (943)
+.|++|+|++|+|+......|.. ..+|++|+|++|.++......+. .+++|++|+|++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 45667777777766432222222 25677777777776543333332 45667777777776664333333
Q ss_pred CCCCCCcEEEEeccccccc----cchhccccccceeccccCCccCCCC----Ccccccccccceeeccceecccc----c
Q 002278 131 TQIPNLKTLDLARNQLTGE----IPRLIYWNEVLQYLGLRGNALTGML----SPDMCQLTGLWYFDVRGNNLTGT----I 198 (943)
Q Consensus 131 ~~l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~N~i~~~----~ 198 (943)
...++|++|+|++|.|+.. ++..+..+++|++|+|++|.|++.. ...+...++|+.|+|++|.|+.. +
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 2356677777777766532 3333445556666666666655321 22333444555555555555432 2
Q ss_pred CCCCcCCCcccEEEeeccccc
Q 002278 199 PDSIGNCTSFEILDISYNQIT 219 (943)
Q Consensus 199 ~~~l~~l~~L~~L~Ls~N~l~ 219 (943)
+..+...++|++|+|++|.|+
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHhCCCCCEEeccCCCCC
Confidence 222333455555555555554
No 404
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.29 E-value=1.9e-12 Score=143.02 Aligned_cols=104 Identities=20% Similarity=0.256 Sum_probs=69.8
Q ss_pred eeeccCC-cCCCCCCCCCCCCCCccEEecCC-CcCCCccCCCcccccccceeecccccccccCCccccCCCccceecccC
Q 002278 377 YLNLSRN-NFKGKVPTELGRIINLDTLDLSV-NNFSGSVPASIGDLEHLLTLNLSRNHLNGLLPAEFGNLRSIQTIDMSF 454 (943)
Q Consensus 377 ~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 454 (943)
.++++++ +++ .+|. +..+++|+.|+|++ |.|++..+..|.++++|+.|+|++|+|+++.|..|.+|++|+.|+|++
T Consensus 12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 4566666 666 4565 77777777777775 777765556677777777777777777776666777777777777777
Q ss_pred ccccccCChhhhcccccceecccCcccCC
Q 002278 455 NQLSGSIPAELGQLQNIISLILNNNNLQG 483 (943)
Q Consensus 455 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 483 (943)
|+|++..+..|..++ |+.|+|.+|+|..
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 777754444454444 7777777776663
No 405
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.26 E-value=6.4e-14 Score=155.32 Aligned_cols=111 Identities=17% Similarity=0.188 Sum_probs=54.6
Q ss_pred CCccEEecCCCcCCC----ccCCCcccccccceeeccccccccc----CCccccCCCccceecccCcccccc----CChh
Q 002278 397 INLDTLDLSVNNFSG----SVPASIGDLEHLLTLNLSRNHLNGL----LPAEFGNLRSIQTIDMSFNQLSGS----IPAE 464 (943)
Q Consensus 397 ~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~ 464 (943)
.+|+.|+|++|.|+. .++..+..+++|++|+|++|.|+.. ++..+...++|++|+|++|.|+.. ++..
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~ 234 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA 234 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence 345555555555432 1222334455566666666665532 234445556666677777666542 2333
Q ss_pred hhcccccceecccCcccCCCCCCcCccc---c--CCcccc--cCCccccc
Q 002278 465 LGQLQNIISLILNNNNLQGGIPDQLSNC---F--SLSNLN--VSYNNLSG 507 (943)
Q Consensus 465 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l---~--~L~~L~--ls~N~l~~ 507 (943)
+...++|++|+|++|+|+..-...+..+ . .|+.+. +..|.++.
T Consensus 235 L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~ 284 (372)
T 3un9_A 235 AREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSE 284 (372)
T ss_dssp HHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHH
T ss_pred HHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCH
Confidence 4455667777777777664333222221 1 156666 66666653
No 406
>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*
Probab=99.19 E-value=2.7e-11 Score=127.96 Aligned_cols=146 Identities=14% Similarity=0.045 Sum_probs=113.1
Q ss_pred HHHhhccccceEEeeeceEEEEEEEecCCceEEEEEecccCcccHHHHHHHHHHHhcCC-CCCcceeeeEEecCCcceEE
Q 002278 612 MRSTENLSEKYIVGYGASSTVYKCALKNSRPIAVKKLYNQYPHNLREFETELETIGSIR-HRNIVSLHGYALSPYGNLLF 690 (943)
Q Consensus 612 ~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~lv 690 (943)
......|+.....|.|+++.||++... ++.+++|............+.+|+++++.+. +..+.++++++...+..++|
T Consensus 10 ~~~l~~~~~~~~~~g~s~~~v~~~~~~-~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv 88 (263)
T 3tm0_A 10 KKLIEKYRCVKDTEGMSPAKVYKLVGE-NENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLL 88 (263)
T ss_dssp HHHHTTSEEEECCSCCSSSEEEEEECS-SCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEE
T ss_pred HHHhccceeEeeccCCCCCeEEEEECC-CCcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCceEEE
Confidence 344567877778888899999999755 6789999986532223346888999999885 67788899999888889999
Q ss_pred EEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCC-----------------------------------
Q 002278 691 YDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDC----------------------------------- 735 (943)
Q Consensus 691 ~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~----------------------------------- 735 (943)
|||++|.++.+.+.. ......++.+++++++.||+..
T Consensus 89 ~e~i~G~~l~~~~~~--------~~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (263)
T 3tm0_A 89 MSEADGVLCSEEYED--------EQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNNDLADVDCENWEE 160 (263)
T ss_dssp EECCSSEEHHHHCCT--------TTCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHHHTTCSCCSGGGGST
T ss_pred EEecCCeehhhccCC--------cccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHHhccccccccccccc
Confidence 999999999876421 1223467889999999999810
Q ss_pred ---------------------CCCeEecCCCCccEEECCCCceeeccccccc
Q 002278 736 ---------------------NPRIIHRDVKSSNILIDENFDAHLSDFGIAR 766 (943)
Q Consensus 736 ---------------------~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~ 766 (943)
.+.++|+|++|.||+++++..+.|+||+.+.
T Consensus 161 ~~~~~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~ 212 (263)
T 3tm0_A 161 DTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSG 212 (263)
T ss_dssp TCSSSSHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEETTEEEEECCCTTCE
T ss_pred cccCCCHHHHHHHHHhcCCCCCceEECCCCCcCcEEEECCcEEEEEEchhcc
Confidence 1358999999999999876566799998764
No 407
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.17 E-value=1.2e-09 Score=121.96 Aligned_cols=316 Identities=12% Similarity=0.033 Sum_probs=160.4
Q ss_pred hhccccccceEEEecCcccccCCCcccCCCCCCcEEEEeccccccccchhccccccceeccccCCccCCCCCcccccccc
Q 002278 104 FSISKLKQLEFLNLKNNQLTGPIPSTLTQIPNLKTLDLARNQLTGEIPRLIYWNEVLQYLGLRGNALTGMLSPDMCQLTG 183 (943)
Q Consensus 104 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 183 (943)
.++....+|+.+.+.. .++.+...+|.++++|+.++|..+ ++.....+|.++ +|+.+.+..+ ++.+....|.. .+
T Consensus 40 ~~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~ 114 (379)
T 4h09_A 40 PWYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TD 114 (379)
T ss_dssp TTGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CC
T ss_pred cccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CC
Confidence 3566778888888864 466577788888999999988754 554555666555 4555554322 44343344433 24
Q ss_pred cceeeccceecccccCCCCcCCCcccEEEeecccccCcCCCCCCcceEeEEEecCccccccCCccccccCCCcEEecCCC
Q 002278 184 LWYFDVRGNNLTGTIPDSIGNCTSFEILDISYNQITGEIPYNIGFLQVATLSLQGNKLTGKIPEVIGLMQALAVLDLSEN 263 (943)
Q Consensus 184 L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~N 263 (943)
|+.+.+..+ ++.+....|.+ .+++.+.+..+ ++.+....|.....++.+.+..+
T Consensus 115 L~~i~lp~~-~~~i~~~~F~~------------------------~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~ 168 (379)
T 4h09_A 115 LDDFEFPGA-TTEIGNYIFYN------------------------SSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSN 168 (379)
T ss_dssp CSEEECCTT-CCEECTTTTTT------------------------CCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTT
T ss_pred cccccCCCc-ccccccccccc------------------------ceeeeeeccce-eeccccchhcccccccccccccc
Confidence 444444332 11122222322 22333332221 22233444555555665555544
Q ss_pred CCCCCCCcccCCCCCcceEEecCCCCCCCCCCCcCCCCcCcEEEcccCccccccccccCCcccceEEEccccccCCcCcc
Q 002278 264 ELVGPIPPILGNLSYTGKLYLHGNKLTGPIPPELGNMSKLSYLQLQNNQLVGTIPAELGKLEQLFELNLADNNLEGPIPH 343 (943)
Q Consensus 264 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~p~ 343 (943)
.........+ ....+ . .....+.....+..+.+..+... .....+....+|+.+.+..+ +..+...
T Consensus 169 ~~~~~~~~~~---------~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~-~~~i~~~ 234 (379)
T 4h09_A 169 NKNYVAENYV---------LYNKN--K-TILESYPAAKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSG-VTTLGDG 234 (379)
T ss_dssp CSSEEEETTE---------EEETT--S-SEEEECCTTCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTT-CCEECTT
T ss_pred cceeecccce---------ecccc--c-ceeccccccccccccccccceeE-Eeecccccccccceeeeccc-eeEEccc
Confidence 3221000000 00000 0 11112233334444444433222 33444555555555555433 3334455
Q ss_pred cccCCCcCcEEEeeCCcccCcccccccccCccceeeccCCcCCCCCCCCCCCCCCccEEecCCCcCCCccCCCccccccc
Q 002278 344 NISSCTALNQFNVHGNRLSGAIPSSFRNLGSLTYLNLSRNNFKGKVPTELGRIINLDTLDLSVNNFSGSVPASIGDLEHL 423 (943)
Q Consensus 344 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 423 (943)
.|.++..|+.+.+..+ ++.+...+|.++.+|+.+.+..+ ++......|..+.+|+.+.+.++.++.....+|.++.+|
T Consensus 235 ~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L 312 (379)
T 4h09_A 235 AFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL 312 (379)
T ss_dssp TTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred cccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence 5666666666666554 44455556666666666666443 333444556666666666666666654445566666677
Q ss_pred ceeecccccccccCCccccCCCccceecccCccccccCChhhhcc
Q 002278 424 LTLNLSRNHLNGLLPAEFGNLRSIQTIDMSFNQLSGSIPAELGQL 468 (943)
Q Consensus 424 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 468 (943)
+.++|..+ ++.+....|.++++|+.+.+..+ ++..-...|.+.
T Consensus 313 ~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 313 SSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred CEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence 77766543 55455566777777777766544 443334455544
No 408
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.15 E-value=1.6e-09 Score=120.91 Aligned_cols=171 Identities=9% Similarity=0.072 Sum_probs=135.1
Q ss_pred cccCCcccceEEEccccccCCcCcccccCCCcCcEEEeeCCcccCcccccccccCccceeeccCCcCCCCCCCCCCCCCC
Q 002278 319 AELGKLEQLFELNLADNNLEGPIPHNISSCTALNQFNVHGNRLSGAIPSSFRNLGSLTYLNLSRNNFKGKVPTELGRIIN 398 (943)
Q Consensus 319 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 398 (943)
..+.....+..+.+..+. .......+..+.+|+.+.+..+ +..+...+|.++.+|+.+.+..+ ++.+....|....+
T Consensus 188 ~~~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~ 264 (379)
T 4h09_A 188 ESYPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTA 264 (379)
T ss_dssp EECCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTT
T ss_pred ccccccccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeeh
Confidence 345555566666665443 3366678888999999998766 44477788999999999999876 66567788999999
Q ss_pred ccEEecCCCcCCCccCCCcccccccceeecccccccccCCccccCCCccceecccCccccccCChhhhcccccceecccC
Q 002278 399 LDTLDLSVNNFSGSVPASIGDLEHLLTLNLSRNHLNGLLPAEFGNLRSIQTIDMSFNQLSGSIPAELGQLQNIISLILNN 478 (943)
Q Consensus 399 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~ 478 (943)
|+.+.+..+ +.......|.++.+|+.+.+.++.++.+....|.++.+|+.++|..+ ++..-...|.++.+|+.+.+..
T Consensus 265 l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 265 LKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp CCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred hcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 999999765 55455678999999999999999999888899999999999999865 7655567899999999999976
Q ss_pred cccCCCCCCcCccccCC
Q 002278 479 NNLQGGIPDQLSNCFSL 495 (943)
Q Consensus 479 N~l~~~~p~~~~~l~~L 495 (943)
+ ++..-...|.++..+
T Consensus 343 ~-v~~I~~~aF~~c~~~ 358 (379)
T 4h09_A 343 S-ITLIESGAFEGSSIT 358 (379)
T ss_dssp T-CCEECTTTTTTSSCC
T ss_pred c-cCEEchhHhhCCCCC
Confidence 5 765556677777533
No 409
>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6
Probab=99.05 E-value=1.6e-10 Score=121.93 Aligned_cols=128 Identities=14% Similarity=0.107 Sum_probs=96.6
Q ss_pred eeeceEEEEEEEecCCceEEEEEecccCcccHHHHHHHHHHHhcCCCCC--cceeeeEEecCCcceEEEEEccCCChhhh
Q 002278 625 GYGASSTVYKCALKNSRPIAVKKLYNQYPHNLREFETELETIGSIRHRN--IVSLHGYALSPYGNLLFYDYMVNGSLWDL 702 (943)
Q Consensus 625 G~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n--iv~l~~~~~~~~~~~lv~e~~~~g~L~~~ 702 (943)
+.|..+.||++...+++.+++|..... ....+.+|+++++.+.+.+ +.+++++...++..++||||++|.++.
T Consensus 29 ~gg~~~~v~~~~~~~g~~~vlK~~~~~---~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v~e~i~G~~l~-- 103 (264)
T 1nd4_A 29 IGCSDAAVFRLSAQGRPVLFVKTDLSG---ALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDLL-- 103 (264)
T ss_dssp CTTSSCEEEEEECTTSCCEEEEEECSC---TTSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECCSSEETT--
T ss_pred cCCCCceEEEEecCCCCeEEEEeCCcc---cchhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEEEEecCCcccC--
Confidence 456669999998777788999987543 2245778999988886444 456888888877889999999998884
Q ss_pred ccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCC-----------------------------------------------
Q 002278 703 LHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDC----------------------------------------------- 735 (943)
Q Consensus 703 l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~----------------------------------------------- 735 (943)
... .+ ...++.++++.++.||+..
T Consensus 104 ~~~------~~---~~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 174 (264)
T 1nd4_A 104 SSH------LA---PAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDDLDEEHQGLAPAELFARL 174 (264)
T ss_dssp TSC------CC---HHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTSCCGGGTTCCHHHHHHHH
T ss_pred cCc------CC---HhHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhcCCccchhhhhhccCccHHHHHHHH
Confidence 211 11 2356778888888888741
Q ss_pred --------CCCeEecCCCCccEEECCCCceeeccccccc
Q 002278 736 --------NPRIIHRDVKSSNILIDENFDAHLSDFGIAR 766 (943)
Q Consensus 736 --------~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~ 766 (943)
.+.++|+|++|.||++++++.+.|+|||.+.
T Consensus 175 ~~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~ 213 (264)
T 1nd4_A 175 KARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLG 213 (264)
T ss_dssp HHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCE
T ss_pred HHhcCCCCCeEEECCCCCCCcEEEECCcEEEEEcchhcc
Confidence 1139999999999999877667799999874
No 410
>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}
Probab=98.90 E-value=3.3e-09 Score=117.42 Aligned_cols=142 Identities=12% Similarity=0.145 Sum_probs=106.3
Q ss_pred cceEEeeeceEEEEEEEecCCceEEEEEec--ccC-cccHHHHHHHHHHHhcCC--CCCcceeeeEEecC---CcceEEE
Q 002278 620 EKYIVGYGASSTVYKCALKNSRPIAVKKLY--NQY-PHNLREFETELETIGSIR--HRNIVSLHGYALSP---YGNLLFY 691 (943)
Q Consensus 620 ~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~--~~~-~~~~~~~~~E~~~l~~l~--h~niv~l~~~~~~~---~~~~lv~ 691 (943)
..+.++.|.++.||++...+ ..+++|+.. ... ......+.+|+++++.+. +..+.++++++.+. +..++||
T Consensus 42 ~~~~l~~G~sn~~y~v~~~~-~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~vm 120 (359)
T 3dxp_A 42 SVEQFKGGQSNPTFKLVTPG-QTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFYIM 120 (359)
T ss_dssp EEEECCC-CCSCEEEEECSS-CEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEEEE
T ss_pred eEEEcCCcccceEEEEEECC-ceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEEEE
Confidence 45678999999999988764 678888775 322 123457888999999887 45678888888766 4479999
Q ss_pred EEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCC------------------------------------
Q 002278 692 DYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDC------------------------------------ 735 (943)
Q Consensus 692 e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~------------------------------------ 735 (943)
||++|..+.+.. ...++..++..++.+++++|+.||+..
T Consensus 121 e~v~G~~l~~~~-----~~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (359)
T 3dxp_A 121 EFVSGRVLWDQS-----LPGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSETESIP 195 (359)
T ss_dssp ECCCCBCCCCTT-----CTTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHCCSCCH
T ss_pred EecCCeecCCCc-----cccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhcCCcCCh
Confidence 999988775422 123678888999999999999999731
Q ss_pred -------------------CCCeEecCCCCccEEECCCCc--eeecccccccc
Q 002278 736 -------------------NPRIIHRDVKSSNILIDENFD--AHLSDFGIARC 767 (943)
Q Consensus 736 -------------------~~~ivH~Dlkp~Nill~~~~~--~kl~DFGla~~ 767 (943)
.+.++|||+++.||+++.++. +.|+||+.+..
T Consensus 196 ~~~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~ 248 (359)
T 3dxp_A 196 AMDSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTL 248 (359)
T ss_dssp HHHHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCEE
T ss_pred HHHHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECcccccc
Confidence 247999999999999997653 68999998863
No 411
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.87 E-value=6e-10 Score=122.24 Aligned_cols=59 Identities=19% Similarity=0.203 Sum_probs=30.7
Q ss_pred ccCCcccceEEEccccccCCcCcccccCCCcCcEEEeeCCcccCccccccc--ccCccceeecc
Q 002278 320 ELGKLEQLFELNLADNNLEGPIPHNISSCTALNQFNVHGNRLSGAIPSSFR--NLGSLTYLNLS 381 (943)
Q Consensus 320 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~l~~L~~L~L~ 381 (943)
.+..+++|+.|+|++|.-. .++. +. +++|+.|+|..|.+.......+. .+++|+.|+|+
T Consensus 167 ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 3445566666666665211 1122 22 56677777766666433222332 46666666664
No 412
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.86 E-value=5.4e-10 Score=122.59 Aligned_cols=60 Identities=25% Similarity=0.261 Sum_probs=31.7
Q ss_pred chhccccccceEEEecCcc-cccCCCcccCCCCCCcEEEEeccccccccchhcc--ccccceecccc
Q 002278 103 PFSISKLKQLEFLNLKNNQ-LTGPIPSTLTQIPNLKTLDLARNQLTGEIPRLIY--WNEVLQYLGLR 166 (943)
Q Consensus 103 p~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~ 166 (943)
+..+..+++|+.|+|++|. +. ++. +. +++|++|+|..|.+.......+. .+++|++|+|+
T Consensus 165 ~~ll~~~P~L~~L~L~g~~~l~--l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 165 SPVLDAMPLLNNLKIKGTNNLS--IGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHHHTCTTCCEEEEECCBTCB--CCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HHHHhcCCCCcEEEEeCCCCce--ecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 3445556677777776662 21 222 32 66777777776666533333332 34555555553
No 413
>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A
Probab=98.86 E-value=1.3e-09 Score=117.72 Aligned_cols=187 Identities=21% Similarity=0.173 Sum_probs=122.1
Q ss_pred ceEEeeeceEEEEEEEecCCceEEEEEecccCcccHHHHHHHHHHHhcCC-CCC--cceeeeEEecCC---cceEEEEEc
Q 002278 621 KYIVGYGASSTVYKCALKNSRPIAVKKLYNQYPHNLREFETELETIGSIR-HRN--IVSLHGYALSPY---GNLLFYDYM 694 (943)
Q Consensus 621 ~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~n--iv~l~~~~~~~~---~~~lv~e~~ 694 (943)
.+.++.|.+..||++. ..+++|+.... .....+.+|+++++.+. +.. +.+++....... ..|+||+++
T Consensus 25 i~~~~~G~~n~v~~v~----~~~vlR~~~~~--~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~vm~~i 98 (304)
T 3sg8_A 25 IEISGEGNDCIAYEIN----RDFIFKFPKHS--RGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGFTKI 98 (304)
T ss_dssp CCEEEECSSEEEEEST----TSEEEEEESSH--HHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEEEECC
T ss_pred eEecCCCCcceEEEEC----CEEEEEecCCc--chHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEEEccc
Confidence 4568999999999863 56888886432 34567889999998873 333 334444433332 348899999
Q ss_pred cCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhC----------------------------------------
Q 002278 695 VNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHD---------------------------------------- 734 (943)
Q Consensus 695 ~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~---------------------------------------- 734 (943)
+|.++.+... ..++..++..++.+++..++.||+.
T Consensus 99 ~G~~l~~~~~-----~~l~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 173 (304)
T 3sg8_A 99 KGVPLTPLLL-----NNLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLSRELKGPQMKKV 173 (304)
T ss_dssp CCEECCHHHH-----HTSCHHHHHHHHHHHHHHHHHHHHSCCTTSCGGGBCCHHHHHHHHHHHHHHHHTTTSCHHHHHHH
T ss_pred CCeECCcccc-----ccCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHHHHHHhcccCCcccHHHH
Confidence 9988865332 2467778888888898888888861
Q ss_pred ---------------CCCCeEecCCCCccEEECC--CCceeecccccccccCCCCCceeee-------------Eecccc
Q 002278 735 ---------------CNPRIIHRDVKSSNILIDE--NFDAHLSDFGIARCIPTAMPHASTF-------------VLGTIG 784 (943)
Q Consensus 735 ---------------~~~~ivH~Dlkp~Nill~~--~~~~kl~DFGla~~~~~~~~~~~~~-------------~~gt~~ 784 (943)
..+.++|+|++|.||++++ +..+.++||+.+..-.....-.... .....+
T Consensus 174 ~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~l~~Y~ 253 (304)
T 3sg8_A 174 DDFYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAISDPDNDFISLMEDDEEYGMEFVSKILNHYK 253 (304)
T ss_dssp HHHHHHHHTCGGGTCCCCEEECSCCCGGGEEEETTTTEEEEECCCTTCEEECTTHHHHTTCCTTTSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHhccccccCCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCccCChHHHHHHHHhhccccCHHHHHHHHHHcC
Confidence 1135899999999999998 4568899999886532210000000 000001
Q ss_pred eeC-ccccccCCCCCcchhhhHHHHHHHHHhCCCCCC
Q 002278 785 YID-PEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVD 820 (943)
Q Consensus 785 y~a-PE~~~~~~~~~~~DvwSlGvil~elltG~~p~~ 820 (943)
+.. |+.... .....+.|++|.++|.+.+|..+|.
T Consensus 254 ~~~~~~~~~r--~~~~~~~~~l~~~~~~~~~g~~~~~ 288 (304)
T 3sg8_A 254 HKDIPTVLEK--YRMKEKYWSFEKIIYGKEYGYMDWY 288 (304)
T ss_dssp CSCHHHHHHH--HHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCcHHHHHH--HHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 111 111111 1123689999999999999988773
No 414
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.75 E-value=2.9e-10 Score=118.07 Aligned_cols=160 Identities=23% Similarity=0.219 Sum_probs=73.6
Q ss_pred CCCCcceeEecCCCCcEEEEEcCC---CCCccccCC-CcCCCCCCCEEEeeCCcccccCCC-CccCCCCCcE--EeccCC
Q 002278 24 DFCSWRGVFCDNSSLSVVSLNLSS---LNLGGEISP-SIGDLRNLQSIDFQGNKLTGQIPD-EIGNCGSLVH--IELSDN 96 (943)
Q Consensus 24 ~~c~w~gv~c~~~~~~v~~L~l~~---~~~~~~~~~-~l~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~--L~Ls~N 96 (943)
+.|+|.|+.|+..+.+|..+...+ ..+.+.+++ .+..++. .|...+|.-++.+.- .|...+.|+. ++++.|
T Consensus 76 ~l~~~~g~i~~~~~~ki~~~v~~~~~~~~~~~~l~~~~~~~Lk~--~l~~ryn~~~~~LdLs~l~~dp~L~~~~l~l~~N 153 (267)
T 3rw6_A 76 ALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKL--IMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLN 153 (267)
T ss_dssp HHHHTTSSCBCTTSCBCCCEEEECCCCHHHHTSCCHHHHHHHHH--HHHHTEETTTTEEECTTGGGCHHHHHTTCCCCTT
T ss_pred HHHhcCcEEECCCCCEEEEEEecCCCcccccccCCHHHHHHHHH--HHHhccchhccccCHHHcCCCcchhhcCccccCC
Confidence 568999999987776776555543 112222211 1111111 112222222211111 1333333433 445555
Q ss_pred CcCCccchh----ccccccceEEEecCccccc--CCCcccCCCCCCcEEEEeccccccccchhccccc--cceeccccCC
Q 002278 97 SLYGDIPFS----ISKLKQLEFLNLKNNQLTG--PIPSTLTQIPNLKTLDLARNQLTGEIPRLIYWNE--VLQYLGLRGN 168 (943)
Q Consensus 97 ~l~~~~p~~----~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~--~L~~L~L~~n 168 (943)
+.. ..+.. ..++++|+.|+|++|+|++ .+|..+..+++|+.|+|++|+|++. ..+..+. +|++|+|++|
T Consensus 154 ~~~-~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~N 230 (267)
T 3rw6_A 154 RRS-CMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGN 230 (267)
T ss_dssp SHH-HHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTS
T ss_pred HHH-HHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCC
Confidence 433 22221 1345556666666666554 2234445556666666666665533 2222233 5666666666
Q ss_pred ccCCCCC-------cccccccccceee
Q 002278 169 ALTGMLS-------PDMCQLTGLWYFD 188 (943)
Q Consensus 169 ~l~~~~~-------~~~~~l~~L~~L~ 188 (943)
.+.+-.+ ..+..+++|+.||
T Consensus 231 pl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 231 SLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp TTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred cCccccCcchhHHHHHHHHCcccCeEC
Confidence 6553222 1245566666655
No 415
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.62 E-value=2.5e-09 Score=105.90 Aligned_cols=119 Identities=12% Similarity=0.168 Sum_probs=77.6
Q ss_pred ccCCCcCCCCCCCEEEeeCC-ccccc----CCCCccCCCCCcEEeccCCCcCCcc----chhccccccceEEEecCcccc
Q 002278 53 EISPSIGDLRNLQSIDFQGN-KLTGQ----IPDEIGNCGSLVHIELSDNSLYGDI----PFSISKLKQLEFLNLKNNQLT 123 (943)
Q Consensus 53 ~~~~~l~~l~~L~~L~Ls~n-~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~----p~~~~~l~~L~~L~Ls~n~l~ 123 (943)
.+...+...+.|++|+|++| .|+.. +...+...++|++|+|++|.|.... ...+...++|++|+|++|.|+
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 34456677788888888888 77642 4445566778888888888887433 334455577888888888877
Q ss_pred cC----CCcccCCCCCCcEEEE--eccccccc----cchhccccccceeccccCCccC
Q 002278 124 GP----IPSTLTQIPNLKTLDL--ARNQLTGE----IPRLIYWNEVLQYLGLRGNALT 171 (943)
Q Consensus 124 ~~----~~~~~~~l~~L~~L~L--s~N~l~~~----~~~~~~~l~~L~~L~L~~n~l~ 171 (943)
.. +...+...++|++|+| ++|.|+.. +...+...++|++|+|++|.+.
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 43 3455666777888888 67777643 2333334455555555555543
No 416
>3r70_A Aminoglycoside phosphotransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE ADP PE3; 1.80A {Escherichia coli} PDB: 3r6z_A* 3uzr_A* 4dca_A* 3hav_A* 3ham_A*
Probab=98.55 E-value=4.4e-07 Score=98.34 Aligned_cols=136 Identities=19% Similarity=0.167 Sum_probs=100.9
Q ss_pred ccccceEEeeeceEEEEEEEecCCceEEEEEecccCcccHHHHHHHHHHHhcCCC--C--CcceeeeEEecCCcceEEEE
Q 002278 617 NLSEKYIVGYGASSTVYKCALKNSRPIAVKKLYNQYPHNLREFETELETIGSIRH--R--NIVSLHGYALSPYGNLLFYD 692 (943)
Q Consensus 617 ~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h--~--niv~l~~~~~~~~~~~lv~e 692 (943)
.+...+.++.|..+.||++ ++.+++|+.... .....+.+|.++++.+.+ . .+.+++++ +..++|||
T Consensus 38 ~i~~v~~l~~G~~n~vy~v----g~~~vlR~~~~~--~~~~~~~~E~~~L~~L~~~~~~~~vP~v~~~----~~~~lvme 107 (320)
T 3r70_A 38 KINELRYLSSGDDSDTFLC----NEQYVVKVPKRD--SVRISQKRELELYRFLENCKLSYQIPAVVYQ----SDRFNIMK 107 (320)
T ss_dssp CCSCEEEEEECSSEEEEEE----TTTEEEEEESSH--HHHHHHHHHHHHHHHHTTSCCSSBCCCEEEE----CSSCEEEE
T ss_pred ceEEEEeCCCCCCceEEEE----CCEEEEEeCCcH--HHHHHHHHHHHHHHHHHhcCCCCCcceEEec----CCcEEEEe
Confidence 5666778999999999998 667888876332 223568899998888865 1 23444444 56799999
Q ss_pred EccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCC------------------------------------
Q 002278 693 YMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCN------------------------------------ 736 (943)
Q Consensus 693 ~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~------------------------------------ 736 (943)
|++|.++.+... ..++..+...++.+++..++.||+...
T Consensus 108 ~i~G~~l~~~~~-----~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (320)
T 3r70_A 108 YIKGERITYEQY-----HKLSEKEKDALAYDEATFLKELHSIEIDCSVSLFSDALVNKKDKFLQDKKLLISILEKEQLLT 182 (320)
T ss_dssp CCCCBCCCHHHH-----TTSCHHHHHHHHHHHHHHHHHHHHSCCCTTSHHHHTTBCCHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred ecCCcccccccc-----ccCCHHHHHHHHHHHHHHHHHHhCCCcccCCCccccccccchHHHHHHHHHHHHHHhhccccc
Confidence 999988864321 235667777888888888888885421
Q ss_pred ------------------------CCeEecCCCCccEEECCCCceeecccccccc
Q 002278 737 ------------------------PRIIHRDVKSSNILIDENFDAHLSDFGIARC 767 (943)
Q Consensus 737 ------------------------~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~ 767 (943)
+.++|+|++|.||+++.+..+.|+||+.+..
T Consensus 183 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~D~~~~N~l~~~~~~~~~iD~~~~~~ 237 (320)
T 3r70_A 183 DEMLEHIETIYENILSNAVLFKYTPCLVHNDFSANNMIFRNNRLFGVIDFGDFNV 237 (320)
T ss_dssp HHHHHHHHHHHHHHHTCGGGTCCCCEEECSCCSGGGEEEETTEEEEECCCTTCEE
T ss_pred ccchHHHHHHHHHHHhccccccCCceeeECCCCCCcEEEECCceEEEECCccccc
Confidence 2359999999999999866679999998854
No 417
>3d1u_A Putative fructosamine-3-kinase; YP_290396.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.85A {Thermobifida fusca} PDB: 3f7w_A
Probab=98.39 E-value=1.3e-06 Score=92.59 Aligned_cols=77 Identities=16% Similarity=0.207 Sum_probs=61.6
Q ss_pred ccceEEeeeceEEEEEEEecCCceEEEEEecccCcccHHHHHHHHHHHhcCCCC---CcceeeeEEecCCcceEEEEEcc
Q 002278 619 SEKYIVGYGASSTVYKCALKNSRPIAVKKLYNQYPHNLREFETELETIGSIRHR---NIVSLHGYALSPYGNLLFYDYMV 695 (943)
Q Consensus 619 ~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~---niv~l~~~~~~~~~~~lv~e~~~ 695 (943)
...+.||.|.++.||++...+|+.++||+...........+.+|++.++.+++. .+.+++++. ..++||||++
T Consensus 18 ~~~~~l~gG~~n~vy~v~~~dG~~~vvK~~~~~~~~~~~~~~~E~~~L~~L~~~~~v~vP~v~~~~----~~~lvme~l~ 93 (288)
T 3d1u_A 18 AAVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGWD----DRTLAMEWVD 93 (288)
T ss_dssp EEEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE----TTEEEEECCC
T ss_pred cceeeeCCcchhheEEEEeCCCCeEEEEecCCCCcchhHHHHHHHHHHHHHHhcCCCCcCeEEEec----CcEEEEEecc
Confidence 345679999999999999888999999986544333446789999999999765 577777763 4799999999
Q ss_pred CCCh
Q 002278 696 NGSL 699 (943)
Q Consensus 696 ~g~L 699 (943)
++.+
T Consensus 94 g~~~ 97 (288)
T 3d1u_A 94 ERPP 97 (288)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 9875
No 418
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.38 E-value=3.1e-08 Score=97.95 Aligned_cols=123 Identities=14% Similarity=0.180 Sum_probs=74.4
Q ss_pred cCCCCccCCCCCcEEeccCC-CcCCc----cchhccccccceEEEecCcccccC----CCcccCCCCCCcEEEEeccccc
Q 002278 77 QIPDEIGNCGSLVHIELSDN-SLYGD----IPFSISKLKQLEFLNLKNNQLTGP----IPSTLTQIPNLKTLDLARNQLT 147 (943)
Q Consensus 77 ~~p~~~~~l~~L~~L~Ls~N-~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~ 147 (943)
.+...+...++|++|+|++| .|... +...+...++|++|+|++|.|... +...+...++|++|+|++|.|+
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 34445667788889999888 88743 334455667888888888887642 2334555577888888888776
Q ss_pred cc----cchhccccccceeccc--cCCccCCCCCcccccccccceeeccceecccccCCCCcCCCcccEEEeeccccc
Q 002278 148 GE----IPRLIYWNEVLQYLGL--RGNALTGMLSPDMCQLTGLWYFDVRGNNLTGTIPDSIGNCTSFEILDISYNQIT 219 (943)
Q Consensus 148 ~~----~~~~~~~l~~L~~L~L--~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~l~~l~~L~~L~Ls~N~l~ 219 (943)
.. +...+...++|++|+| ++|.|+..... .+...+...++|++|+|++|.+.
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~--------------------~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM--------------------EIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH--------------------HHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHH--------------------HHHHHHHhCCCcCEEeccCCCCC
Confidence 43 3344444455555555 44555422111 12233445566777777777664
No 419
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.37 E-value=3.6e-08 Score=102.32 Aligned_cols=64 Identities=23% Similarity=0.311 Sum_probs=28.6
Q ss_pred CCccEEecCCCcCCC--ccCCCcccccccceeecccccccccCCccccCCC--ccceecccCccccccCC
Q 002278 397 INLDTLDLSVNNFSG--SVPASIGDLEHLLTLNLSRNHLNGLLPAEFGNLR--SIQTIDMSFNQLSGSIP 462 (943)
Q Consensus 397 ~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~p 462 (943)
++|+.|+|++|+|++ .+|..+..+++|+.|+|++|+|++. ..+..++ +|++|+|++|.+.+.+|
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence 344444444444443 2233344455555555555555433 2222222 55555555555554443
No 420
>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*
Probab=98.32 E-value=3.2e-06 Score=90.81 Aligned_cols=135 Identities=17% Similarity=0.111 Sum_probs=94.8
Q ss_pred ceEEeeeceEEEEEEEecCCceEEEEEecccCcccHHHHHHHHHHHhcCCCC---CcceeeeEEe-cCCcceEEEEEccC
Q 002278 621 KYIVGYGASSTVYKCALKNSRPIAVKKLYNQYPHNLREFETELETIGSIRHR---NIVSLHGYAL-SPYGNLLFYDYMVN 696 (943)
Q Consensus 621 ~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~---niv~l~~~~~-~~~~~~lv~e~~~~ 696 (943)
...++.|....||+. ++.+++|+-. .......+.+|+++++.+.+. .|.+++.++. ..+..++|||+++|
T Consensus 24 v~~l~~G~~n~v~~v----g~~~VlR~~~--~~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~~~v~e~i~G 97 (306)
T 3tdw_A 24 VESLGEGFRNYAILV----NGDWVFRFPK--SQQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYRKVQG 97 (306)
T ss_dssp EEEEEECSSEEEEEE----TTTEEEEEES--SHHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCEEEEEECCCS
T ss_pred eeecCCCcceeEEEE----CCEEEEEecC--CchHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCceEEEEeccCC
Confidence 456899999999988 5678888742 223456788999999998753 2556666664 44567899999999
Q ss_pred CChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhC------------------------------------------
Q 002278 697 GSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHD------------------------------------------ 734 (943)
Q Consensus 697 g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~------------------------------------------ 734 (943)
..+.+... ..++..+...++.++++.|+.||+.
T Consensus 98 ~~l~~~~~-----~~l~~~~~~~~~~~lg~~La~LH~~~~~~~~~~g~p~~~w~~~~~~~~~~~~~~~~~~l~~~~~~~l 172 (306)
T 3tdw_A 98 QILGEDGM-----AVLPDDAKDRLALQLAEFMNELSAFPVETAISAGVPVTNLKNKILLLSEAVEDQVFPLLDESLRDYL 172 (306)
T ss_dssp EECHHHHH-----TTSCHHHHHHHHHHHHHHHHHHHHSCHHHHHHTTCCBCCHHHHHHHHHHHHHHHTGGGSCHHHHHHH
T ss_pred eECchhhh-----hhCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCChHHHHHHHHHHHHHHHHhcccccchhhHHHH
Confidence 88866321 1234455555556666665555542
Q ss_pred ---------------CCCCeEecCCCCccEEECC---CCc-eeeccccccc
Q 002278 735 ---------------CNPRIIHRDVKSSNILIDE---NFD-AHLSDFGIAR 766 (943)
Q Consensus 735 ---------------~~~~ivH~Dlkp~Nill~~---~~~-~kl~DFGla~ 766 (943)
..+.++|+|++|.||+++. ++. +.|+||+.+.
T Consensus 173 ~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~ 223 (306)
T 3tdw_A 173 TLRFQSYMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAA 223 (306)
T ss_dssp HHHHHHHHHCHHHHCCCCEEECSCCSGGGEEECTTCSSCCEEEECCCTTCE
T ss_pred HHHHHHHHhCcccccCCCeeEeCCCCcccEEEecCCCCCceEEEEehhhcC
Confidence 1235699999999999987 455 4899999875
No 421
>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*
Probab=98.28 E-value=2.2e-06 Score=90.46 Aligned_cols=134 Identities=17% Similarity=0.164 Sum_probs=96.4
Q ss_pred EEeeeceE-EEEEEEec-CCceEEEEEecccCcccHHHHHHHHHHHhcCC-CCCcceeeeEEecCCcceEEEEEccCCCh
Q 002278 623 IVGYGASS-TVYKCALK-NSRPIAVKKLYNQYPHNLREFETELETIGSIR-HRNIVSLHGYALSPYGNLLFYDYMVNGSL 699 (943)
Q Consensus 623 ~lG~G~~g-~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~lv~e~~~~g~L 699 (943)
.+..|..| .||+.... ++..+++|+-.. .....+.+|.+.++.+. +--|.++++++.+++..++|||+++|.++
T Consensus 31 ~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~---~~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~lvme~l~G~~~ 107 (272)
T 4gkh_A 31 RDNVGQSGATIYRLYGKPNAPELFLKHGKG---SVANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTTAIPGKTA 107 (272)
T ss_dssp EEECSSSSCEEEEEECCTTCCCEEEEEEET---HHHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCCSEEH
T ss_pred EccCCCcCCeEEEEEecCCCeEEEEEECCC---CCHhHHHHHHHHHHHhccCCCcCeEEEEEEECCeEEEEEEeeCCccc
Confidence 45667666 68988765 456788887543 23467888999988774 33367788899888899999999999887
Q ss_pred hhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhC---------------------------------------------
Q 002278 700 WDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHD--------------------------------------------- 734 (943)
Q Consensus 700 ~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~--------------------------------------------- 734 (943)
.+.... .......++.+++..++.||+.
T Consensus 108 ~~~~~~-------~~~~~~~~~~~l~~~L~~Lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (272)
T 4gkh_A 108 FQVLEE-------YPDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASDFDDERNGWPVEQVW 180 (272)
T ss_dssp HHHHHH-------CGGGHHHHHHHHHHHHHHHHTSCGGGCCBBCCHHHHHHHHHHHHHTTCCCGGGCCGGGTTCCHHHHH
T ss_pred cccccC-------CHHHHHHHHHHHHHHHHHhcCCCcccCCcCcccccchhhHHHHHHHhhhhhhhccccccchHHHHHH
Confidence 765421 1122344566666777777643
Q ss_pred ----------CCCCeEecCCCCccEEECCCCceeeccccccc
Q 002278 735 ----------CNPRIIHRDVKSSNILIDENFDAHLSDFGIAR 766 (943)
Q Consensus 735 ----------~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~ 766 (943)
..+.++|+|+.+.||++++++.+-|+||+.+.
T Consensus 181 ~~l~~~~~~~~~~~l~HGDl~~~Nil~~~~~~~~viDwe~a~ 222 (272)
T 4gkh_A 181 KEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVG 222 (272)
T ss_dssp HHHHTTCCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCE
T ss_pred HHHHhcccccCCcEEEcCCCCCCeEEEECCeEEEEEECcccc
Confidence 01247999999999999987777899999774
No 422
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.15 E-value=9e-07 Score=85.02 Aligned_cols=92 Identities=18% Similarity=0.104 Sum_probs=69.0
Q ss_pred cCCCcCCCCCCCEEEeeCCcccccCCCCccCCCCCcEEeccCCC-cCCccchhcccc----ccceEEEecCcc-cccCCC
Q 002278 54 ISPSIGDLRNLQSIDFQGNKLTGQIPDEIGNCGSLVHIELSDNS-LYGDIPFSISKL----KQLEFLNLKNNQ-LTGPIP 127 (943)
Q Consensus 54 ~~~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~~l----~~L~~L~Ls~n~-l~~~~~ 127 (943)
+|.....-..|++|||+++.|+...-..+.++++|++|+|++|. |++..-..++.+ ++|++|+|++|. ++...-
T Consensus 53 LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred CCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence 44433333468999999998887666678889999999999985 775444556654 479999999884 876555
Q ss_pred cccCCCCCCcEEEEeccc
Q 002278 128 STLTQIPNLKTLDLARNQ 145 (943)
Q Consensus 128 ~~~~~l~~L~~L~Ls~N~ 145 (943)
..+.++++|++|+|+++.
T Consensus 133 ~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 133 IALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHGGGCTTCCEEEEESCT
T ss_pred HHHhcCCCCCEEECCCCC
Confidence 677888999999999885
No 423
>3ovc_A Hygromycin-B 4-O-kinase; aminoglycoside phosphotransferase, structural genomics, PSI- protein structure initiative; HET: HY0 PE4; 1.95A {Escherichia coli} PDB: 3tyk_A*
Probab=98.14 E-value=9.2e-06 Score=89.29 Aligned_cols=144 Identities=13% Similarity=0.101 Sum_probs=90.2
Q ss_pred cccceEEeeeceEEEEEEEecCCceEEEEEecccCcccHHHHHHHHHHHhcCCCCC--cceeeeEEecC-CcceEEEEEc
Q 002278 618 LSEKYIVGYGASSTVYKCALKNSRPIAVKKLYNQYPHNLREFETELETIGSIRHRN--IVSLHGYALSP-YGNLLFYDYM 694 (943)
Q Consensus 618 ~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n--iv~l~~~~~~~-~~~~lv~e~~ 694 (943)
....+.++.|....+|+... +++.+++|..... ..+.+|+.+++.+.... +.++++++... +..++||||+
T Consensus 43 ~~~i~~l~gG~~n~~y~v~~-~g~~~vlK~~~~~-----~~~~~E~~~l~~L~~~gvpvP~vl~~~~~~~g~~~lv~e~l 116 (362)
T 3ovc_A 43 VSDLMQLSEGEESRAFSFDV-GGRGYVLRVNSCA-----DGFYKDRYVYRHFASAALPIPEVLDIGEFSESLTYCISRRA 116 (362)
T ss_dssp CEEEEEEEECSSEEEEEEEE-TTEEEEEEEESCC-----HHHHHHHHHHHHHCCSSSCCCCEEEEEESSSSCEEEEEECC
T ss_pred CceEEECCCCCcceEEEEEE-CCcEEEEEeCCch-----hhHHHHHHHHHHHHhcCCCCceEEEeccCCCCCeEEEEEec
Confidence 33456789999999999875 4778888876432 36888999988886433 55677776664 5679999999
Q ss_pred cCCChhhh------------------ccCCCCC-----c---------cCCHHHH---------------------HHHH
Q 002278 695 VNGSLWDL------------------LHGPSKK-----V---------KLDWETR---------------------LKIA 721 (943)
Q Consensus 695 ~~g~L~~~------------------l~~~~~~-----~---------~l~~~~~---------------------~~i~ 721 (943)
+|..+.+. ++..... . .-.|... ....
T Consensus 117 ~G~~l~~l~~~~~~~~~~~lg~~La~LH~~~~~~~~gl~~~~~~~~~~~~~w~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 196 (362)
T 3ovc_A 117 QGVTLQDLPETELPAVLQPVAEAMDAIAAADLSQTSGFGPFGPQGIGQYTTWRDFICAIADPHVYHWQTVMDDTVSASVA 196 (362)
T ss_dssp CSEETTTSCGGGSGGGHHHHHHHHHHHHHCCCTTCBCEEEECTTSBEEESSHHHHHHGGGCTTTCCHHHHCCTTTHHHHH
T ss_pred CCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCccccCccCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHhhcccccch
Confidence 98766421 0100000 0 0011111 0111
Q ss_pred HHHHHHHHHhhhC-CCCCeEecCCCCccEEECCCCceeecccccccc
Q 002278 722 VGAAQGLAYLHHD-CNPRIIHRDVKSSNILIDENFDAHLSDFGIARC 767 (943)
Q Consensus 722 ~~i~~~l~~LH~~-~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~ 767 (943)
..+...++++... ..+.++|+|+.+.||++++++.+.|+||+.+..
T Consensus 197 ~~~~~l~~~l~~lp~~~~l~HgDl~~~Nil~~~~~~~~viD~~~~~~ 243 (362)
T 3ovc_A 197 QALDELMLWAEDCPEVRHLVHADFGSNNVLTDNGRITAVIDWSEAMF 243 (362)
T ss_dssp HHHHHHHHHGGGCCCCCEEECSSCSSTTEEEETTEEEEECCCTTCEE
T ss_pred HHHHHHHHHHhhCCCCcEEEeCCCCCCeEEEeCCCEEEEECCccccc
Confidence 1122222233211 125789999999999998777788999998854
No 424
>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*
Probab=98.08 E-value=5.4e-06 Score=91.29 Aligned_cols=81 Identities=11% Similarity=0.030 Sum_probs=55.6
Q ss_pred ceEE-eeeceEEEEEEEec-------CCceEEEEEecccC---cccHHHHHHHHHHHhcCC-C--CCcceeeeEEecC--
Q 002278 621 KYIV-GYGASSTVYKCALK-------NSRPIAVKKLYNQY---PHNLREFETELETIGSIR-H--RNIVSLHGYALSP-- 684 (943)
Q Consensus 621 ~~~l-G~G~~g~Vy~~~~~-------~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~-h--~niv~l~~~~~~~-- 684 (943)
.+.| +.|....+|+.... +++.+++|...... ......+.+|+++++.+. + -.+.++++++.+.
T Consensus 25 ~~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~~~ 104 (357)
T 3ats_A 25 ESGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTGDV 104 (357)
T ss_dssp EEEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSSTT
T ss_pred EEECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCCCc
Confidence 3567 88999999998764 25678888764322 101245778888888774 3 3466788877655
Q ss_pred -CcceEEEEEccCCChhh
Q 002278 685 -YGNLLFYDYMVNGSLWD 701 (943)
Q Consensus 685 -~~~~lv~e~~~~g~L~~ 701 (943)
+..++||||++|..+.+
T Consensus 105 ~g~~~~v~e~l~G~~l~~ 122 (357)
T 3ats_A 105 LGTPFFLMDYVEGVVPPD 122 (357)
T ss_dssp TSSCEEEEECCCCBCCCB
T ss_pred cCCceEEEEecCCCChhh
Confidence 34689999999877654
No 425
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.93 E-value=2.6e-06 Score=81.82 Aligned_cols=90 Identities=14% Similarity=0.090 Sum_probs=56.1
Q ss_pred CCCccCCCCCcEEeccCCCcCCccchhccccccceEEEecCcc-cccCCCcccCCC----CCCcEEEEeccc-cccccch
Q 002278 79 PDEIGNCGSLVHIELSDNSLYGDIPFSISKLKQLEFLNLKNNQ-LTGPIPSTLTQI----PNLKTLDLARNQ-LTGEIPR 152 (943)
Q Consensus 79 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l----~~L~~L~Ls~N~-l~~~~~~ 152 (943)
|.....--+|++|||+++.|+...-..+.++++|++|+|++|. ++...-..++.+ ++|++|+|++|. |+..--.
T Consensus 54 P~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~ 133 (176)
T 3e4g_A 54 PTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII 133 (176)
T ss_dssp CCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH
T ss_pred CcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH
Confidence 4333233467888888888776555667777888888888774 665444455554 367777777764 6644344
Q ss_pred hccccccceeccccCC
Q 002278 153 LIYWNEVLQYLGLRGN 168 (943)
Q Consensus 153 ~~~~l~~L~~L~L~~n 168 (943)
.+..+++|++|+|+++
T Consensus 134 ~L~~~~~L~~L~L~~c 149 (176)
T 3e4g_A 134 ALHHFRNLKYLFLSDL 149 (176)
T ss_dssp HGGGCTTCCEEEEESC
T ss_pred HHhcCCCCCEEECCCC
Confidence 4455555666665555
No 426
>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}
Probab=97.84 E-value=6.4e-05 Score=79.82 Aligned_cols=79 Identities=15% Similarity=0.214 Sum_probs=58.2
Q ss_pred ccccceEEeeeceEEEEEEEecCCceEEEEEecccCcccHHHHHHHHHHHhcCCC---CCcceeeeEEecCCcceEEEEE
Q 002278 617 NLSEKYIVGYGASSTVYKCALKNSRPIAVKKLYNQYPHNLREFETELETIGSIRH---RNIVSLHGYALSPYGNLLFYDY 693 (943)
Q Consensus 617 ~~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h---~niv~l~~~~~~~~~~~lv~e~ 693 (943)
.......+|.|..+.||+.+..+|+.|++|+-..........+.+|++.|+.+.. --+.+++++. ..++||||
T Consensus 16 ~v~~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~~----~~~lv~e~ 91 (288)
T 3f7w_A 16 EVAAVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGWD----DRTLAMEW 91 (288)
T ss_dssp CEEEEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE----TTEEEEEC
T ss_pred CeEEEEecCCCCCeEEEEEEECCCCEEEEEEeCCCCcchhhHHHHHHHHHHHHHhhCCCCcceEEecc----CceEEEEe
Confidence 3455677899999999999999999999998765544444568889999888742 1344555442 45899999
Q ss_pred ccCCCh
Q 002278 694 MVNGSL 699 (943)
Q Consensus 694 ~~~g~L 699 (943)
++++..
T Consensus 92 l~~~~~ 97 (288)
T 3f7w_A 92 VDERPP 97 (288)
T ss_dssp CCCCCC
T ss_pred ecccCC
Confidence 987654
No 427
>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*
Probab=97.68 E-value=9.8e-05 Score=82.42 Aligned_cols=75 Identities=8% Similarity=0.012 Sum_probs=49.0
Q ss_pred ceEEeeeceEEEEEEEec-CCceEEEEEecccCc-------ccHHHHHHHHHHHhcCCC--CC-cceeeeEEecCCcceE
Q 002278 621 KYIVGYGASSTVYKCALK-NSRPIAVKKLYNQYP-------HNLREFETELETIGSIRH--RN-IVSLHGYALSPYGNLL 689 (943)
Q Consensus 621 ~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~-------~~~~~~~~E~~~l~~l~h--~n-iv~l~~~~~~~~~~~l 689 (943)
.+.+|.|.++.||++... +++.++||....... .....+..|.++++.+.. |. +.+++.+ +.+..++
T Consensus 35 ~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~--d~~~~~l 112 (397)
T 2olc_A 35 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAVT 112 (397)
T ss_dssp EEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTEE
T ss_pred EEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEE--cCCccEE
Confidence 457899999999999764 467899997643211 123456778888887642 33 3455543 3456789
Q ss_pred EEEEccCC
Q 002278 690 FYDYMVNG 697 (943)
Q Consensus 690 v~e~~~~g 697 (943)
|||++++.
T Consensus 113 vmE~l~g~ 120 (397)
T 2olc_A 113 VMEDLSHL 120 (397)
T ss_dssp EECCCTTS
T ss_pred EEEeCCCc
Confidence 99999764
No 428
>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}
Probab=97.64 E-value=0.00026 Score=75.55 Aligned_cols=139 Identities=14% Similarity=0.123 Sum_probs=91.7
Q ss_pred cceEEeeeceEEEEEEEecCCceEEEEEecccCcccHHHHHHHHHHHhcCC---CCCcceeeeEEecCCcceEEEEEccC
Q 002278 620 EKYIVGYGASSTVYKCALKNSRPIAVKKLYNQYPHNLREFETELETIGSIR---HRNIVSLHGYALSPYGNLLFYDYMVN 696 (943)
Q Consensus 620 ~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~---h~niv~l~~~~~~~~~~~lv~e~~~~ 696 (943)
..+.|+.|.+..+|+... +++.+++|..... ....+.+|++.++.+. ...+.++++++...+..++||||+++
T Consensus 40 ~~~~l~gG~~n~~y~v~~-~~~~~vlK~~~~~---~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~~~lvme~l~G 115 (312)
T 3jr1_A 40 HKEKLYSGEMNEIWLIND-EVQTVFVKINERS---YRSMFRAEADQLALLAKTNSINVPLVYGIGNSQGHSFLLLEALNK 115 (312)
T ss_dssp EEEEECCSSSSEEEEEES-SSCEEEEEEEEGG---GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSEEEEEEECCCC
T ss_pred eeEEeCCccceeeeEEEE-CCCeEEEEeCCcc---cHHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCceEEEEEeccC
Confidence 345689999999999876 4678888876532 3567889999888874 35678888888888889999999998
Q ss_pred CChhh-----------hccCCCC---Cc----------------cCCHHHHH---HHH----------------HHHHH-
Q 002278 697 GSLWD-----------LLHGPSK---KV----------------KLDWETRL---KIA----------------VGAAQ- 726 (943)
Q Consensus 697 g~L~~-----------~l~~~~~---~~----------------~l~~~~~~---~i~----------------~~i~~- 726 (943)
..+.. .++.... .+ .-+|.+.. ++. ..++.
T Consensus 116 ~~~~~~~~~~lG~~LA~LH~~~~~~~fG~~~~~~~G~~~q~n~w~~~W~~f~~~~Rl~~~l~~a~~~g~~~~~~~~l~~~ 195 (312)
T 3jr1_A 116 SKNKQSSFTIFAEKIAQLHQIQGPDKYGLDFDTWLGPIYQPNDWQTSWAKFFSENRIGWQLQICKEKGLIFGNIDLIVQI 195 (312)
T ss_dssp CCCCTTHHHHHHHHHHHHHHCCCCSSBBCSSCEEETTEEECCCCBSCHHHHHHHHTHHHHHHHHHHHTCCCSCHHHHHHH
T ss_pred CCCCchhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCcCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHH
Confidence 76521 1221111 00 12454321 111 11111
Q ss_pred HHHHhhh-CCCCCeEecCCCCccEEECCCCceeecccc
Q 002278 727 GLAYLHH-DCNPRIIHRDVKSSNILIDENFDAHLSDFG 763 (943)
Q Consensus 727 ~l~~LH~-~~~~~ivH~Dlkp~Nill~~~~~~kl~DFG 763 (943)
....|.. ...+.+||+|+.+.|++++.++ +.|.||+
T Consensus 196 l~~~L~~~~~~~~l~HgD~~~~N~l~~~~~-~~~iD~~ 232 (312)
T 3jr1_A 196 VADTLSKHNPKPSILHGNLWIENCIQVDDK-IFVCNPA 232 (312)
T ss_dssp HHHHHTTCCCCCEEECSSCSGGGEEEETTE-EEECSCC
T ss_pred HHHHhccCCCCceeEeCCCCcCcEeecCCC-eEEEcCc
Confidence 1223421 2256899999999999999887 8899974
No 429
>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}
Probab=97.62 E-value=7.2e-05 Score=81.65 Aligned_cols=140 Identities=14% Similarity=0.158 Sum_probs=78.5
Q ss_pred eEEeeeceEEEEEEEecCCceEEEEEecccCcccHHHHHHHHHHHhcCC-----CCCcceee-e--EEecCCcceEEEEE
Q 002278 622 YIVGYGASSTVYKCALKNSRPIAVKKLYNQYPHNLREFETELETIGSIR-----HRNIVSLH-G--YALSPYGNLLFYDY 693 (943)
Q Consensus 622 ~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-----h~niv~l~-~--~~~~~~~~~lv~e~ 693 (943)
..|+.|..+.||++...++ .+++|+.... ...+..|.++++.+. .|.++... | +....+..+++|+|
T Consensus 38 ~~l~gG~~n~~~~v~~~~~-~~vlk~~~~~----~~~~~~e~~~l~~L~~~g~~vp~~~~~~~g~~~~~~~~~~~~l~~~ 112 (346)
T 2q83_A 38 DVIQGNQMALVWKVHTDSG-AVCLKRIHRP----EKKALFSIFAQDYLAKKGMNVPGILPNKKGSLYSKHGSFLFVVYDW 112 (346)
T ss_dssp EECC----CEEEEEEETTE-EEEEEEECSC----HHHHHHHHHHHHHHHHHTCSSCCBCCCTTSCSCEEETTEEEEEEEC
T ss_pred eeccccccCcEEEEEeCCC-CEEEEecCCC----HHHHHHHHHHHHHHHHcCCCCCceeecCCCCEEEEECCEEEEEEEe
Confidence 3466678899999987644 5889988642 234445555555443 24443311 1 12235567899999
Q ss_pred ccCCChh--------------hhccC----CCCC-------ccCCHHHH-------------------------------
Q 002278 694 MVNGSLW--------------DLLHG----PSKK-------VKLDWETR------------------------------- 717 (943)
Q Consensus 694 ~~~g~L~--------------~~l~~----~~~~-------~~l~~~~~------------------------------- 717 (943)
++|..+. ..++. .... ....|...
T Consensus 113 i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 192 (346)
T 2q83_A 113 IEGRPFELTVKQDLEFIMKGLADFHTASVGYQPPNGVPIFTKLGRWPNHYTKRCKQMETWKLMAEAEKEDPFSQLYLQEI 192 (346)
T ss_dssp CCCBCCCTTSHHHHHHHHHHHHHHHHHHTTCCCCTTCCCCBCTTCHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred ecCccCCCCCHHHHHHHHHHHHHHHHhCCCCCCCccchhcccccchHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHH
Confidence 9986542 00110 0000 01122211
Q ss_pred HHHHHHHHHHHHHhhh----------CCCCCeEecCCCCccEEECCCCceeeccccccc
Q 002278 718 LKIAVGAAQGLAYLHH----------DCNPRIIHRDVKSSNILIDENFDAHLSDFGIAR 766 (943)
Q Consensus 718 ~~i~~~i~~~l~~LH~----------~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~ 766 (943)
..+...+..++++|++ ...+.++|||+++.||+++.++.+.|+||+.+.
T Consensus 193 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~ 251 (346)
T 2q83_A 193 DGFIEDGLRIKDRLLQSTYVPWTEQLKKSPNLCHQDYGTGNTLLGENEQIWVIDLDTVS 251 (346)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHSCCEECSSCSTTSEEECGGGCEEECCCTTCE
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHhccccCceecCCCCcccEEEeCCCcEEEEehhhcc
Confidence 1111223445666653 023489999999999999888889999999764
No 430
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.42 E-value=2.3e-05 Score=76.70 Aligned_cols=114 Identities=15% Similarity=0.170 Sum_probs=67.1
Q ss_pred CCcCCCCCCCEEEeeCC-cccc----cCCCCccCCCCCcEEeccCCCcCCccch----hccccccceEEEecCcccccC-
Q 002278 56 PSIGDLRNLQSIDFQGN-KLTG----QIPDEIGNCGSLVHIELSDNSLYGDIPF----SISKLKQLEFLNLKNNQLTGP- 125 (943)
Q Consensus 56 ~~l~~l~~L~~L~Ls~n-~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~----~~~~l~~L~~L~Ls~n~l~~~- 125 (943)
..+.+-+.|++|+|++| +|.. .+-+.+..-+.|+.|+|++|+|.+.... .+..-+.|++|+|++|+|...
T Consensus 35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence 34455667888888775 6653 2344455567788888888887744333 333456777777777777632
Q ss_pred ---CCcccCCCCCCcEEEEecc---cccc----ccchhccccccceeccccCCc
Q 002278 126 ---IPSTLTQIPNLKTLDLARN---QLTG----EIPRLIYWNEVLQYLGLRGNA 169 (943)
Q Consensus 126 ---~~~~~~~l~~L~~L~Ls~N---~l~~----~~~~~~~~l~~L~~L~L~~n~ 169 (943)
+...+..-+.|++|+|++| .+.. .+...+...+.|+.|+++.|.
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 2234555566777777654 3331 233444455556666665544
No 431
>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}
Probab=97.29 E-value=0.00062 Score=76.44 Aligned_cols=78 Identities=9% Similarity=0.096 Sum_probs=46.9
Q ss_pred CCeEecCCCCccEEECCCCceeecccccccccCCCCCceeeeEecccceeCccccccCC---CCCcchhhhHHHHHHHHH
Q 002278 737 PRIIHRDVKSSNILIDENFDAHLSDFGIARCIPTAMPHASTFVLGTIGYIDPEYAHTSR---LNEKSDVYSFGIVLLEIL 813 (943)
Q Consensus 737 ~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---~~~~~DvwSlGvil~ell 813 (943)
+.++|||++|.|||++.++ ++++||+.+..-.....-......-...|++|+...... .....++.+....+|+.+
T Consensus 232 ~~liHGDl~~~Nil~~~~~-~~lID~e~a~~G~p~~Dla~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 310 (420)
T 2pyw_A 232 QALIHGDLHTGSVMVTQDS-TQVIDPEFSFYGPMGFDIGAYLGNLILAFFAQDGHATQENDRKEYKQWILRTIEQTWNLF 310 (420)
T ss_dssp CEEECSCCSGGGEEECSSC-EEECCCTTCEEECHHHHHHHHHHHHHHHHHHGGGGCCSSCCSHHHHHHHHHHHHHHHHHH
T ss_pred CeEEecCCCCCcEEEeCCC-CEEEeCcccccCchHHHHHHHHHHHHHHHHhcccccccccchHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999876 999999988643211000000000013466666554211 122355567788888776
Q ss_pred hC
Q 002278 814 TG 815 (943)
Q Consensus 814 tG 815 (943)
++
T Consensus 311 ~~ 312 (420)
T 2pyw_A 311 NK 312 (420)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 432
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.20 E-value=0.00011 Score=71.95 Aligned_cols=88 Identities=15% Similarity=0.191 Sum_probs=58.4
Q ss_pred CccCCCCCcEEeccCC-CcCCc----cchhccccccceEEEecCcccccCC----CcccCCCCCCcEEEEeccccccc--
Q 002278 81 EIGNCGSLVHIELSDN-SLYGD----IPFSISKLKQLEFLNLKNNQLTGPI----PSTLTQIPNLKTLDLARNQLTGE-- 149 (943)
Q Consensus 81 ~~~~l~~L~~L~Ls~N-~l~~~----~p~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~-- 149 (943)
.+.+-+.|++|+|++| +|... +..++..-+.|+.|+|++|+|.... ...+..-+.|++|+|++|+|...
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 3455678999999985 77643 3445666688888999988887433 33444567888888888888743
Q ss_pred --cchhccccccceeccccCC
Q 002278 150 --IPRLIYWNEVLQYLGLRGN 168 (943)
Q Consensus 150 --~~~~~~~l~~L~~L~L~~n 168 (943)
+...+...+.|++|+|++|
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHhhCCceeEEECCCC
Confidence 3334444555666666554
No 433
>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}
Probab=97.17 E-value=0.0015 Score=69.66 Aligned_cols=73 Identities=7% Similarity=0.055 Sum_probs=45.0
Q ss_pred ccceEEeeeceEEEEEEEecCCceEEEEEecccCcccHHHHHHHHHHHhcCCCCCc-ceeeeEEecCCcceEEEEEc-cC
Q 002278 619 SEKYIVGYGASSTVYKCALKNSRPIAVKKLYNQYPHNLREFETELETIGSIRHRNI-VSLHGYALSPYGNLLFYDYM-VN 696 (943)
Q Consensus 619 ~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~ni-v~l~~~~~~~~~~~lv~e~~-~~ 696 (943)
.-.+.|+.|....+|++ +.+++|........ .....+|+++++.+...++ .+++++ +.+..++++||+ +|
T Consensus 21 ~~i~~l~gG~tN~~~~~-----~~~vlR~~~~~~~~-~~~r~~E~~~l~~l~~~g~~P~~~~~--~~~~~~~v~e~i~~g 92 (301)
T 3dxq_A 21 TGPLERLGGLTNLVFRA-----GDLCLRIPGKGTEE-YINRANEAVAAREAAKAGVSPEVLHV--DPATGVMVTRYIAGA 92 (301)
T ss_dssp CSCEEEESCSSEEEEEE-----TTEEEEEECC-----CCCHHHHHHHHHHHHHTTSSCCEEEE--CTTTCCEEEECCTTC
T ss_pred cceeEcCCcccccccee-----eeEEEECCCCCccc-eeCHHHHHHHHHHHHHcCCCCceEEE--ECCCCEEEEeecCCC
Confidence 33678999999999998 56888877543211 1123567777776643333 344443 344568899999 55
Q ss_pred CCh
Q 002278 697 GSL 699 (943)
Q Consensus 697 g~L 699 (943)
.++
T Consensus 93 ~~l 95 (301)
T 3dxq_A 93 QTM 95 (301)
T ss_dssp EEC
T ss_pred ccC
Confidence 444
No 434
>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6
Probab=96.94 E-value=0.008 Score=64.71 Aligned_cols=157 Identities=13% Similarity=0.085 Sum_probs=87.9
Q ss_pred cCHHHHHHHhhccc-----cceEEeeeceEEEEEEEecCCceEEEEEecccCcccHHHHHHHHHHHhcCCCCC--cceee
Q 002278 606 HTFDDIMRSTENLS-----EKYIVGYGASSTVYKCALKNSRPIAVKKLYNQYPHNLREFETELETIGSIRHRN--IVSLH 678 (943)
Q Consensus 606 ~~~~~~~~~~~~~~-----~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n--iv~l~ 678 (943)
.+.+++....+.|. ....++ |....||++...+|+.+++|...... .....+..|.++++.+.... +++++
T Consensus 11 l~~~~i~~~l~~~g~~~~~~~~~l~-g~~n~~y~v~~~~g~~~vlK~~~~~~-~~~~~~~~E~~~~~~L~~~g~~vp~~~ 88 (328)
T 1zyl_A 11 LHPDTIMDALFEHGIRVDSGLTPLN-SYENRVYQFQDEDRRRFVVKFYRPER-WTADQILEEHQFALQLVNDEVPVAAPV 88 (328)
T ss_dssp CCHHHHHHHHHHTTCCCCSCCEEEC-CSSSEEEEECCTTCCCEEEEEECTTT-SCHHHHHHHHHHHHHHHHTTCSBCCCC
T ss_pred CCHHHHHHHHHHcCCCCCceEEeec-CcccceEEEEcCCCCEEEEEEcCCCC-CCHHHHHHHHHHHHHHHHcCCeeccee
Confidence 44555555545443 234577 88889999877777789999875321 23466777888877764222 34444
Q ss_pred eE-----EecCCcceEEEEEccCCChhh----h----------cc----CCC--CCccCCHHHH----------------
Q 002278 679 GY-----ALSPYGNLLFYDYMVNGSLWD----L----------LH----GPS--KKVKLDWETR---------------- 717 (943)
Q Consensus 679 ~~-----~~~~~~~~lv~e~~~~g~L~~----~----------l~----~~~--~~~~l~~~~~---------------- 717 (943)
.. ....+..+++|++++|..+.. . ++ ... .....++...
T Consensus 89 ~~~g~~~~~~~g~~~~l~~~i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 168 (328)
T 1zyl_A 89 AFNGQTLLNHQGFYFAVFPSVGGRQFEADNIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKLFEDATLIPS 168 (328)
T ss_dssp CBTTBSCEEETTEEEEEEECCCCEECCSSCHHHHHHHHHHHHHHHHHHTSSCCSSSCBCSHHHHTHHHHHHHHTCSSSCT
T ss_pred ecCCcEEEEECCEEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCccCCCCCHHHHHhhHHHHHhhcCcCCH
Confidence 43 112345578999998754321 0 11 000 0111222211
Q ss_pred ------HHHHHHHHHHHHHhhh-CCCCCeEecCCCCccEEECCCCceeeccccccc
Q 002278 718 ------LKIAVGAAQGLAYLHH-DCNPRIIHRDVKSSNILIDENFDAHLSDFGIAR 766 (943)
Q Consensus 718 ------~~i~~~i~~~l~~LH~-~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~ 766 (943)
...+..++..++-.-. .....++|||+++.||+++ + .+.++||+.+.
T Consensus 169 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~HgD~~~~Nil~~-~-~~~lIDfe~a~ 222 (328)
T 1zyl_A 169 GLKAAFLKATDELIAAVTAHWREDFTVLRLHGDCHAGNILWR-D-GPMFVDLDDAR 222 (328)
T ss_dssp TTHHHHHHHHHHHHHHHHHHCCSCSCCEECCSSCSGGGEEES-S-SEEECCCTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCeeeeeCCCCcccEeEc-C-CCEEEECCCCC
Confidence 0111122222222111 1233689999999999999 4 89999998765
No 435
>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}
Probab=96.89 E-value=0.0039 Score=67.45 Aligned_cols=31 Identities=26% Similarity=0.312 Sum_probs=27.0
Q ss_pred CCeEecCCCCccEEECCC----Cceeecccccccc
Q 002278 737 PRIIHRDVKSSNILIDEN----FDAHLSDFGIARC 767 (943)
Q Consensus 737 ~~ivH~Dlkp~Nill~~~----~~~kl~DFGla~~ 767 (943)
+.++|||+.+.||+++.+ +.+.|+||+.+..
T Consensus 183 ~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~ 217 (333)
T 3csv_A 183 MVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKL 217 (333)
T ss_dssp CEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEE
T ss_pred CeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCc
Confidence 479999999999999874 6799999998864
No 436
>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6
Probab=96.86 E-value=0.0086 Score=64.29 Aligned_cols=157 Identities=13% Similarity=0.099 Sum_probs=84.5
Q ss_pred CHHHHHHHhhcccc-----ceEEeeeceEEEEEEEecCCceEEEEEecccCcccHHHHHHHHHHHhcCCCCC--cceeee
Q 002278 607 TFDDIMRSTENLSE-----KYIVGYGASSTVYKCALKNSRPIAVKKLYNQYPHNLREFETELETIGSIRHRN--IVSLHG 679 (943)
Q Consensus 607 ~~~~~~~~~~~~~~-----~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n--iv~l~~ 679 (943)
+.+++.....+|.. .+.|+.|....+|+....++ .+++|...... ....+..|+++++.+...+ +.+++.
T Consensus 8 ~~~~l~~~l~~~~~~~~~~~~~i~~G~~n~~~~v~~~~g-~~vlk~~~~~~--~~~~l~~e~~~l~~L~~~g~~vP~~~~ 84 (322)
T 2ppq_A 8 TEDELRNFLTQYDVGSLTSYKGIAEGVENSNFLLHTTKD-PLILTLYEKRV--EKNDLPFFLGLMQHLAAKGLSCPLPLP 84 (322)
T ss_dssp CHHHHHHHHTTBCCCCEEEEEEECC---EEEEEEEESSC-CEEEEEECC-----CCHHHHHHHHHHHHHHTTCCCCCBCC
T ss_pred CHHHHHHHHHhCCCCcceEeeccCCCcccceEEEEeCCc-cEEEEEeCCCC--CHHHHHHHHHHHHHHHHCCCCCCcccC
Confidence 44555555555544 34567788899999987655 68888876421 1234556777776663212 233332
Q ss_pred E------EecCCcceEEEEEccCCChhhh--------------cc----CCCCC--cc---CCHHHHHH-----------
Q 002278 680 Y------ALSPYGNLLFYDYMVNGSLWDL--------------LH----GPSKK--VK---LDWETRLK----------- 719 (943)
Q Consensus 680 ~------~~~~~~~~lv~e~~~~g~L~~~--------------l~----~~~~~--~~---l~~~~~~~----------- 719 (943)
. ....+..+++|+|++|..+... ++ ..... .. ..|.....
T Consensus 85 ~~~g~~~~~~~g~~~~l~~~l~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 164 (322)
T 2ppq_A 85 RKDGELLGELSGRPAALISFLEGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADEVEK 164 (322)
T ss_dssp BTTCCSCEEETTEEEEEEECCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGGGGTST
T ss_pred CCCCCEEEEECCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHHHHHHHhccCCCcccCccChHHHHHHHHHHHHHHHhhhh
Confidence 1 1223456899999988654210 11 00000 00 11222110
Q ss_pred -HHHHHHHHHHHhhhC----CCCCeEecCCCCccEEECCCCceeeccccccc
Q 002278 720 -IAVGAAQGLAYLHHD----CNPRIIHRDVKSSNILIDENFDAHLSDFGIAR 766 (943)
Q Consensus 720 -i~~~i~~~l~~LH~~----~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~ 766 (943)
+...+...++++++. ...+++|+|+.+.||++++++.+.++||+.+.
T Consensus 165 ~l~~~l~~~~~~l~~~~~~~~~~~liHgDl~~~Nil~~~~~~~~lIDf~~a~ 216 (322)
T 2ppq_A 165 GLREEIRPEIDYLAAHWPKDLPAGVIHADLFQDNVFFLGDELSGLIDFYFAC 216 (322)
T ss_dssp THHHHHHHHHHHHHHHCCCSSCEEEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred hhHHHHHHHHHHHHhhCcccCCcccCCCCCCccCEEEeCCceEEEecchhcc
Confidence 011134445555431 13478999999999999887666899998764
No 437
>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8
Probab=96.79 E-value=0.0026 Score=71.31 Aligned_cols=73 Identities=15% Similarity=0.239 Sum_probs=49.2
Q ss_pred ceEEeeeceEEEEEEEecC--------CceEEEEEecccCcccHHHHHHHHHHHhcCCCCCc-ceeeeEEecCCcceEEE
Q 002278 621 KYIVGYGASSTVYKCALKN--------SRPIAVKKLYNQYPHNLREFETELETIGSIRHRNI-VSLHGYALSPYGNLLFY 691 (943)
Q Consensus 621 ~~~lG~G~~g~Vy~~~~~~--------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~ni-v~l~~~~~~~~~~~lv~ 691 (943)
.+.|+.|....||++...+ ++.+++|+.... .....+.+|..+++.+...++ .++++.+.+ .+|+
T Consensus 78 v~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~--~~~~~li~E~~~l~~L~~~g~~P~l~~~~~~----g~v~ 151 (429)
T 1nw1_A 78 ISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNP--ETESHLVAESVIFTLLSERHLGPKLYGIFSG----GRLE 151 (429)
T ss_dssp EEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSC--CCHHHHHHHHHHHHHHHHTTSSSCEEEEETT----EEEE
T ss_pred EEEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCC--CcHHHHHHHHHHHHHHHhCCCCCcEEEEeCC----CEEE
Confidence 3568889999999998653 467888877432 122455679988888753333 566665532 3899
Q ss_pred EEccCCCh
Q 002278 692 DYMVNGSL 699 (943)
Q Consensus 692 e~~~~g~L 699 (943)
||++|.++
T Consensus 152 e~l~G~~l 159 (429)
T 1nw1_A 152 EYIPSRPL 159 (429)
T ss_dssp CCCCEEEC
T ss_pred EEeCCccc
Confidence 99987444
No 438
>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}
Probab=96.66 E-value=0.0092 Score=67.14 Aligned_cols=74 Identities=12% Similarity=0.048 Sum_probs=47.2
Q ss_pred ceEEeeeceEEEEEEEecC-CceEEEEEecccCcccHHHHHHHHHHHhcCCCCCc-ceeeeEEecCCcceEEEEEccCCC
Q 002278 621 KYIVGYGASSTVYKCALKN-SRPIAVKKLYNQYPHNLREFETELETIGSIRHRNI-VSLHGYALSPYGNLLFYDYMVNGS 698 (943)
Q Consensus 621 ~~~lG~G~~g~Vy~~~~~~-~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~ni-v~l~~~~~~~~~~~lv~e~~~~g~ 698 (943)
.+.|+.|-...+|++...+ ++.+++|+...... ......+|..+++.+...++ .++++++. + ..||||++|..
T Consensus 113 i~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~~-~~idR~~E~~vl~~L~~~gl~P~ll~~~~--~--G~v~e~I~G~~ 187 (458)
T 2qg7_A 113 FQIINGGITNILIKVKDMSKQAKYLIRLYGPKTD-EIINREREKKISCILYNKNIAKKIYVFFT--N--GRIEEFMDGYA 187 (458)
T ss_dssp EEEECC--CEEEEEEEETTTTEEEEEEEECC-CC-SCSCHHHHHHHHHHHTTSSSBCCEEEEET--T--EEEEECCCSEE
T ss_pred EEEcCCCeEeEEEEEEECCCCceEEEEECCCChh-hhcCHHHHHHHHHHHHhcCCCCCEEEEeC--C--eEEEEeeCCcc
Confidence 3568889999999998765 46788887643221 11123578888888864444 56676662 2 35999998755
Q ss_pred h
Q 002278 699 L 699 (943)
Q Consensus 699 L 699 (943)
+
T Consensus 188 l 188 (458)
T 2qg7_A 188 L 188 (458)
T ss_dssp C
T ss_pred C
Confidence 4
No 439
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.59 E-value=0.0018 Score=59.03 Aligned_cols=56 Identities=21% Similarity=0.326 Sum_probs=28.3
Q ss_pred EEecCCCcCC-CccCCCcccccccceeecccccccccCCccccCCCccceecccCcccc
Q 002278 401 TLDLSVNNFS-GSVPASIGDLEHLLTLNLSRNHLNGLLPAEFGNLRSIQTIDMSFNQLS 458 (943)
Q Consensus 401 ~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 458 (943)
.++.+++.++ ..+|..+. ++|+.|+|++|+|+.+.+..|..+++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4555555554 12343221 23555555555555554555555555555555555553
No 440
>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A
Probab=96.55 E-value=0.014 Score=57.26 Aligned_cols=101 Identities=17% Similarity=0.130 Sum_probs=66.3
Q ss_pred ChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccEEECCCCceeecccccccccCCCCCceee
Q 002278 698 SLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILIDENFDAHLSDFGIARCIPTAMPHAST 777 (943)
Q Consensus 698 ~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Nill~~~~~~kl~DFGla~~~~~~~~~~~~ 777 (943)
+|.++|.. ...++++++++.++.|.+.+|.-+-...++ ..+=+.|..|++..+|.|...+ +.+.
T Consensus 34 SL~eIL~~--~~~PlsEEqaWALc~Qc~~~L~~~~~~~~~--~~~i~~~~~i~l~~dG~V~f~~-~~s~----------- 97 (229)
T 2yle_A 34 SLEEILRL--YNQPINEEQAWAVCYQCCGSLRAAARRRQP--RHRVRSAAQIRVWRDGAVTLAP-AADD----------- 97 (229)
T ss_dssp EHHHHHHH--HTSCCCHHHHHHHHHHHHHHHHHHHHTTCC--CCCCCSGGGEEEETTSCEEECC-C--------------
T ss_pred cHHHHHHH--cCCCcCHHHHHHHHHHHHHHHHhhhhcccC--CceecCCcceEEecCCceeccc-cccc-----------
Confidence 78888873 456899999999999999998776221111 1334467999999999988764 1110
Q ss_pred eEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCC
Q 002278 778 FVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKK 817 (943)
Q Consensus 778 ~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~ 817 (943)
.....+.|||... ...+.+.=|||+|+++|..+--..
T Consensus 98 --~~~~~~~~pe~~~-~~~te~~~IysLG~tLY~ALDygL 134 (229)
T 2yle_A 98 --AGEPPPVAGKLGY-SQCMETEVIESLGIIIYKALDYGL 134 (229)
T ss_dssp -----------CCSS-SSSCHHHHHHHHHHHHHHHHTTTC
T ss_pred --ccccCCCChhhcc-ccchHHHHHHHHHHHHHHHhhcCC
Confidence 0123567888764 345678899999999999886333
No 441
>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*
Probab=96.49 E-value=0.0072 Score=66.16 Aligned_cols=140 Identities=17% Similarity=0.187 Sum_probs=82.0
Q ss_pred eEEeeeceEEEEEEEecC--------CceEEEEEecccCcccHHHHHHHHHHHhcCC-CCCcceeeeEEecCCcceEEEE
Q 002278 622 YIVGYGASSTVYKCALKN--------SRPIAVKKLYNQYPHNLREFETELETIGSIR-HRNIVSLHGYALSPYGNLLFYD 692 (943)
Q Consensus 622 ~~lG~G~~g~Vy~~~~~~--------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~lv~e 692 (943)
+.+..|....+|++...+ ++.+++|+.-. .......+.+|.++++.+. +.-..++++++.+ .+|||
T Consensus 56 ~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~-~~~~~~~~~rE~~vl~~L~~~gv~P~ll~~~~~----g~v~e 130 (379)
T 3feg_A 56 YPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGA-ILQGVDSLVLESVMFAILAERSLGPQLYGVFPE----GRLEQ 130 (379)
T ss_dssp EEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC----CCHHHHHHHHHHHHHHHHTTSSCCEEEEETT----EEEEE
T ss_pred EEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCC-ccchHHHHHHHHHHHHHHHhcCCCCeEEEEcCC----ccEEE
Confidence 457778889999988642 46788887532 2234566778999988875 3223566666543 28999
Q ss_pred EccCCChhhh-----------------ccCCC--CCccC--CHHHHHHHHHHHHH-------------------HHHHhh
Q 002278 693 YMVNGSLWDL-----------------LHGPS--KKVKL--DWETRLKIAVGAAQ-------------------GLAYLH 732 (943)
Q Consensus 693 ~~~~g~L~~~-----------------l~~~~--~~~~l--~~~~~~~i~~~i~~-------------------~l~~LH 732 (943)
|++|..+..- ++... ..... -+.++.++..++.. .++.|.
T Consensus 131 ~i~G~~l~~~~l~~p~~~~~ia~~La~LH~~~~~~~~~~~~l~~~i~~w~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~ 210 (379)
T 3feg_A 131 YIPSRPLKTQELREPVLSAAIATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYSLKDEMGNLR 210 (379)
T ss_dssp CCSEEECCGGGGGCHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSCCSCCHHHHTTHHHHHHHHH
T ss_pred EecCccCChhHhCCHHHHHHHHHHHHHHhCCCCCCCCCcccHHHHHHHHHHHHHhccCcccchhhhhhhHHHHHHHHHHH
Confidence 9998655321 11111 01112 24455555544322 223332
Q ss_pred ----hC-CCCCeEecCCCCccEEECCC----Cceeeccccccc
Q 002278 733 ----HD-CNPRIIHRDVKSSNILIDEN----FDAHLSDFGIAR 766 (943)
Q Consensus 733 ----~~-~~~~ivH~Dlkp~Nill~~~----~~~kl~DFGla~ 766 (943)
.. ....++|+|+.+.||+++.+ +.+.++||..|.
T Consensus 211 ~~L~~~~~~~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~ 253 (379)
T 3feg_A 211 KLLESTPSPVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSS 253 (379)
T ss_dssp HHHHTSCCCEEEECSCCCGGGEEEESCC---CCEEECCCTTCE
T ss_pred HHHhhcCCCcEEEcCCCCCCeEEEcCCCCccCcEEEEecccCC
Confidence 11 13368999999999999876 789999998774
No 442
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.26 E-value=0.0062 Score=55.49 Aligned_cols=57 Identities=25% Similarity=0.366 Sum_probs=42.3
Q ss_pred ceeeccCCcCC-CCCCCCCCCCCCccEEecCCCcCCCccCCCcccccccceeeccccccc
Q 002278 376 TYLNLSRNNFK-GKVPTELGRIINLDTLDLSVNNFSGSVPASIGDLEHLLTLNLSRNHLN 434 (943)
Q Consensus 376 ~~L~L~~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 434 (943)
..++.+++.++ ..+|..+. .+|+.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 36777777775 24555443 36888888888888766777888888888999888775
No 443
>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*
Probab=96.25 E-value=0.0067 Score=66.61 Aligned_cols=73 Identities=11% Similarity=0.132 Sum_probs=42.7
Q ss_pred eEEeeeceEEEEEEEecC---------CceEEEEEecccCcccHHHHHHHHHHHhcCCCCC-cceeeeEEecCCcceEEE
Q 002278 622 YIVGYGASSTVYKCALKN---------SRPIAVKKLYNQYPHNLREFETELETIGSIRHRN-IVSLHGYALSPYGNLLFY 691 (943)
Q Consensus 622 ~~lG~G~~g~Vy~~~~~~---------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n-iv~l~~~~~~~~~~~lv~ 691 (943)
..++.|....+|++...+ ++.+++|..... .........|.++++.+...+ +.++++.. .-++||
T Consensus 39 ~~l~~G~~N~~y~v~~~~~~~~~~~~~~~~~vlRi~~~~-~~~~~~~~~E~~~l~~L~~~g~~P~~~~~~----~~~~v~ 113 (369)
T 3c5i_A 39 KQILSGLTNQLFEVGLKEETANNYNSIRTRVLFRIYGKH-VDELYNTISEFEVYKTMSKYKIAPQLLNTF----NGGRIE 113 (369)
T ss_dssp EEC----CCEEEEEEECHHHHTTCTTSCCEEEEEECCTT-GGGTSCHHHHHHHHHHHHHTTSSCCEEEEE----TTEEEE
T ss_pred EEeCCcccceEEEEEeCCCCcccccCCCceEEEEecCCC-ccceecHHHHHHHHHHHHhcCCCCceEEec----CCcEEE
Confidence 457788888999988653 257777775432 111123467888877775333 34566544 237899
Q ss_pred EEccCCCh
Q 002278 692 DYMVNGSL 699 (943)
Q Consensus 692 e~~~~g~L 699 (943)
||++|..+
T Consensus 114 e~i~G~~l 121 (369)
T 3c5i_A 114 EWLYGDPL 121 (369)
T ss_dssp ECCCSEEC
T ss_pred EEecCCcC
Confidence 99987543
No 444
>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*
Probab=95.94 E-value=0.04 Score=59.48 Aligned_cols=30 Identities=17% Similarity=0.303 Sum_probs=26.9
Q ss_pred CCeEecCCCCccEEECCCCceeeccccccc
Q 002278 737 PRIIHRDVKSSNILIDENFDAHLSDFGIAR 766 (943)
Q Consensus 737 ~~ivH~Dlkp~Nill~~~~~~kl~DFGla~ 766 (943)
..++|+|+.+.||++++++.+.++||+.+.
T Consensus 206 ~~~~HgD~~~~N~l~~~~~~~~~iD~e~~~ 235 (339)
T 3i1a_A 206 YVLCHSDIHAGNVLVGNEESIYIIDWDEPM 235 (339)
T ss_dssp CEEECSCCCGGGEEECGGGCEEECCCSSCE
T ss_pred ceeEeCCCCcCCEEEeCCCeEEEEECCCCe
Confidence 478999999999999988889999998765
No 445
>3f2s_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics consortium, SGC, hemicholinium-3, alternative splicing, cytoplasm; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 3g15_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=95.09 E-value=0.069 Score=58.57 Aligned_cols=141 Identities=18% Similarity=0.175 Sum_probs=80.3
Q ss_pred eEEeeeceEEEEEEEecC--------CceEEEEEecccCcc-----------cH-------HHHHHHHHHHhcCC-CCCc
Q 002278 622 YIVGYGASSTVYKCALKN--------SRPIAVKKLYNQYPH-----------NL-------REFETELETIGSIR-HRNI 674 (943)
Q Consensus 622 ~~lG~G~~g~Vy~~~~~~--------~~~vavK~~~~~~~~-----------~~-------~~~~~E~~~l~~l~-h~ni 674 (943)
+.|..|-...+|++...+ .+.|.++..-..... .. +....|.++++.+. +.-.
T Consensus 58 ~~l~gGlTN~~~~v~~~~~~~~~~~~~~~~llRi~G~~te~~~~~~~~~~~idR~~~~~~~~~~~~E~~~l~~L~~~Gi~ 137 (401)
T 3f2s_A 58 SVIRGGLSNMLFQCSLPDTTATLGDEPRKVLLRLYGAILQMRSCNKEGSEQAQKENEFQGAEAMVLESVMFAILAERSLG 137 (401)
T ss_dssp EEEECSSEEEEEEEECCTTCCCSSSCCSEEEEEEEEC-----------------------CHHHHHHHHHHHHHHHTTSS
T ss_pred EEcCCCccCceEEEEeCCCcccccCCCccEEEEeCCCCcccccccccccchhhhhhhhccchhhHHHHHHHHHHHhcCCC
Confidence 457778999999988753 356777765332111 00 12234888888775 3334
Q ss_pred ceeeeEEecCCcceEEEEEccCCChhh--h---------------ccCCC--CCccCC--HHHHHHHHHHHH--------
Q 002278 675 VSLHGYALSPYGNLLFYDYMVNGSLWD--L---------------LHGPS--KKVKLD--WETRLKIAVGAA-------- 725 (943)
Q Consensus 675 v~l~~~~~~~~~~~lv~e~~~~g~L~~--~---------------l~~~~--~~~~l~--~~~~~~i~~~i~-------- 725 (943)
.++++++.. .+|+||++|-+|.. + ++... ...... +..+.++..++.
T Consensus 138 Pkl~~~~~~----G~i~efI~G~~L~~~dl~~p~~~~~iA~~L~~LH~~~~~~~~~~~~l~~~i~~~~~~l~~~~~~~~~ 213 (401)
T 3f2s_A 138 PKLYGIFPQ----GRLEQFIPSRRLDTEELSLPDISAEIAEKMATFHGMKMPFNKEPKWLFGTMEKYLKEVLRIKFTEES 213 (401)
T ss_dssp CCEEEEETT----EEEEECCCEEECCGGGGGSHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSHH
T ss_pred CeEEEEeCC----CeEEEecCCccCCHHHHhhHHHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHHhccCcchh
Confidence 567776643 28999999755421 1 11110 111122 234444443321
Q ss_pred --------------HHHH----HhhhC-CCCCeEecCCCCccEEECCC------Cceeeccccccc
Q 002278 726 --------------QGLA----YLHHD-CNPRIIHRDVKSSNILIDEN------FDAHLSDFGIAR 766 (943)
Q Consensus 726 --------------~~l~----~LH~~-~~~~ivH~Dlkp~Nill~~~------~~~kl~DFGla~ 766 (943)
..+. +|... ....++|+|+.+.||+++.+ +.+.++||..|.
T Consensus 214 ~~~~~~~~~~~~l~~e~~~l~~~l~~~~~~~v~~H~Dl~~~Nil~~~~~~~~~~~~~~lID~E~a~ 279 (401)
T 3f2s_A 214 RIKKLHKLLSYNLPLELENLRSLLESTPSPVVFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSS 279 (401)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSCCCEEEECSCCCGGGEEEETTGGGCSSSCEEECCCTTCE
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHHhhcCCCeeEEeccCCcccEEEcCCcccCcccceEEEeeccCC
Confidence 1122 22221 23368999999999999876 789999998764
No 446
>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}
Probab=94.04 E-value=0.14 Score=56.73 Aligned_cols=74 Identities=8% Similarity=0.054 Sum_probs=47.5
Q ss_pred ceEEeeeceEEEEEEEecC--------CceEEEEEecccCcccHHHHHHHHHHHhcCC-CCCcceeeeEEecCCcceEEE
Q 002278 621 KYIVGYGASSTVYKCALKN--------SRPIAVKKLYNQYPHNLREFETELETIGSIR-HRNIVSLHGYALSPYGNLLFY 691 (943)
Q Consensus 621 ~~~lG~G~~g~Vy~~~~~~--------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~lv~ 691 (943)
.+.+..|....+|++...+ ++.+++++..... .......+|.++++.+. +.-..++++.+ ..+.||
T Consensus 75 v~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlRi~g~~t-~~~idR~~E~~~l~~L~~~gi~P~l~~~~----~~~~I~ 149 (424)
T 3mes_A 75 VKQIFSGLTNQLFVVSIVNESMSLSLKHPRILFRIYGKHV-GKFYDSKVELDVFRYLSNINIAPNIIADF----PEGRIE 149 (424)
T ss_dssp EEEECCCSSSEEEEEEECCC-----CCCSEEEEEECCCCC--CCCCHHHHHHHHHHHHHTTSSCCEEEEE----TTEEEE
T ss_pred EEEcCCCcccceEEEEeCCCcccccCCCCeEEEEECCCCc-chhcCHHHHHHHHHHHHhcCCCCCEEEEc----CCCEEE
Confidence 3467778899999998753 5778888754322 22223457888887774 22234555533 237899
Q ss_pred EEccCCCh
Q 002278 692 DYMVNGSL 699 (943)
Q Consensus 692 e~~~~g~L 699 (943)
||++|..+
T Consensus 150 efI~G~~l 157 (424)
T 3mes_A 150 EFIDGEPL 157 (424)
T ss_dssp ECCCSEEC
T ss_pred EEeCCccC
Confidence 99998654
No 447
>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=90.56 E-value=0.43 Score=52.61 Aligned_cols=29 Identities=31% Similarity=0.452 Sum_probs=24.5
Q ss_pred CeEecCCCCccEEE------CCCCceeeccccccc
Q 002278 738 RIIHRDVKSSNILI------DENFDAHLSDFGIAR 766 (943)
Q Consensus 738 ~ivH~Dlkp~Nill------~~~~~~kl~DFGla~ 766 (943)
.++|+|+.+.||++ +++..++++||-.|.
T Consensus 245 vfcHnDl~~gNil~~~~~~~~~~~~l~vIDwEya~ 279 (401)
T 3g15_A 245 VFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSS 279 (401)
T ss_dssp EEECSCCCGGGEEEETTGGGCSSCCEEECCCTTCE
T ss_pred eeEEecCCCCeEEEecCcccCcCCeEEEechHhcc
Confidence 35799999999999 456779999998874
No 448
>4ann_A ESSB; membrane protein, membrane secretion, ESS type VII secretion virulence; 1.05A {Staphylococcus aureus subsp}
Probab=79.00 E-value=4.3 Score=39.70 Aligned_cols=116 Identities=8% Similarity=0.055 Sum_probs=77.8
Q ss_pred CCCCcceeeeEEecCCcceEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCCeEecCCCCccE
Q 002278 670 RHRNIVSLHGYALSPYGNLLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNI 749 (943)
Q Consensus 670 ~h~niv~l~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~ivH~Dlkp~Ni 749 (943)
.||+.++. .+-.+++...+.++. ..+...+- .-...+...+++++.+|+....++++. +|--+.|+|+
T Consensus 43 ~~~~Fl~~-~I~e~eD~v~~~y~~--~~~~~~f~----~ik~~~~~eKlr~l~ni~~l~~~~~~r-----~tf~L~P~NL 110 (215)
T 4ann_A 43 HSPYFIDA-ELTELRDSFQIHYDI--NDNHTPFD----NIKSFTKNEKLRYLLNIKNLEEVNRTR-----YTFVLAPDEL 110 (215)
T ss_dssp CCTTBCCE-EEEECSSEEEEEECC--CTTSEEGG----GGGGSCHHHHHHHHHHGGGGGGGGGSS-----EECCCSGGGE
T ss_pred cCCcccce-EEEEcccEEEEEEEc--CcccCCHH----HHHhcCHHHHHHHHHHHHHHHHHhcCc-----eEEEEecceE
Confidence 68888877 455555554444443 33332322 123578899999999999988777654 7889999999
Q ss_pred EECCCCceeecccccccccCCCCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCC
Q 002278 750 LIDENFDAHLSDFGIARCIPTAMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVD 820 (943)
Q Consensus 750 ll~~~~~~kl~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~ 820 (943)
+++.++.+++.=.|+...+. |. ..+...=.-.+=+++..+++++..|+
T Consensus 111 ~f~~~~~p~i~~RGik~~l~------------------P~-----~~~ee~fL~qyKAliiall~~K~~Fe 158 (215)
T 4ann_A 111 FFTRDGLPIAKTRGLQNVVD------------------PL-----PVSEAEFLTRYKALVICAFNEKQSFD 158 (215)
T ss_dssp EECTTSCEEESCCEETTTBS------------------CC-----CCCHHHHHHHHHHHHHHHHCTTCCHH
T ss_pred EEcCCCCEEEEEccCccCCC------------------CC-----CCCHHHHHHHHHHHHHHHHcCCCCHH
Confidence 99999999998877643322 11 11112223356678888899888774
No 449
>4ano_A ESSB; membrane protein, membrane secretion, ESS type V secretion S; HET: MSE; 1.70A {Geobacillus thermodenitrificans ng80-2organism_taxid}
Probab=77.38 E-value=6.8 Score=38.40 Aligned_cols=115 Identities=10% Similarity=0.130 Sum_probs=75.7
Q ss_pred CCCCcceeeeEEecCCcceEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHH-HhhhCCCCCeEecCCCCcc
Q 002278 670 RHRNIVSLHGYALSPYGNLLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLA-YLHHDCNPRIIHRDVKSSN 748 (943)
Q Consensus 670 ~h~niv~l~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~-~LH~~~~~~ivH~Dlkp~N 748 (943)
.||+. -..+-.+++...+.++.-+++.=...+ ...+...+++++.+++.... +++.. +|--+.|+|
T Consensus 48 ~~~~f--~~~I~~~eD~~~i~y~~~~~~~~f~~i------~~~~~~eKlrll~nl~~L~~~~~~~r-----~tf~l~P~N 114 (219)
T 4ano_A 48 VDPCI--VRDIDVSEDEVKVVIKPPSSFLTFAAI------RKTTLLSRIRAAIHLVSKVKHHSARR-----LIFIVCPEN 114 (219)
T ss_dssp SCSSS--EEEEEECSSEEEEEEECCTTCEEHHHH------HTSCHHHHHHHHHHHHHHHSSCCSSS-----EECCCCGGG
T ss_pred cCCCC--CeEEEEeCCEEEEEEEcCcccCcHHHH------HhcCHHHHHHHHHHHHHHHHHhhhCc-----eeEEEeCce
Confidence 57887 334446666666666654343222233 24788999999999998877 66654 788999999
Q ss_pred EEECCCCceeecccccccccCCCCCceeeeEecccceeCccccccCCCCCcchhhhHHHHHHHHHhCCCCCC
Q 002278 749 ILIDENFDAHLSDFGIARCIPTAMPHASTFVLGTIGYIDPEYAHTSRLNEKSDVYSFGIVLLEILTGKKAVD 820 (943)
Q Consensus 749 ill~~~~~~kl~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwSlGvil~elltG~~p~~ 820 (943)
++++.++.+++.=.|+-..+ +|.- .+..-=.-.+=|++..++.++..|+
T Consensus 115 L~f~~~~~p~i~hRGi~~~l------------------pP~e-----~~ee~fl~qyKali~all~~K~~Fe 163 (219)
T 4ano_A 115 LMFNRALEPFFLHVGVKESL------------------PPDE-----WDDERLLREVKATVLALTEGEYRFD 163 (219)
T ss_dssp EEECTTCCEEESCCEETTTB------------------SSCS-----CCHHHHHHHHHHHHHHHTTCSSCHH
T ss_pred EEEeCCCcEEEEEcCCcccC------------------CCCC-----CCHHHHHHHHHHHHHHHHcCCCCHH
Confidence 99999999999887764332 2221 1111112356677788888777664
No 450
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=66.02 E-value=0.67 Score=52.03 Aligned_cols=59 Identities=10% Similarity=0.079 Sum_probs=16.9
Q ss_pred eEEeeeceEEEEEEEecC-CceEEE------EEecccC--cccHHHHHHHHHHHhcCCCCCcceeeeEEec
Q 002278 622 YIVGYGASSTVYKCALKN-SRPIAV------KKLYNQY--PHNLREFETELETIGSIRHRNIVSLHGYALS 683 (943)
Q Consensus 622 ~~lG~G~~g~Vy~~~~~~-~~~vav------K~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~ 683 (943)
+.+| ||.||+|.+.. ..+||| |+..... .+....+.+|..+++..+|||+++.+++...
T Consensus 148 ~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~~~~e~~~~~~rea~l~~~~~H~niv~~h~f~~~ 215 (463)
T 3cxl_A 148 EHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFKVH 215 (463)
T ss_dssp TTSS---BCCC---------CCBGGGC-----------------------------------CBCCCEEEE
T ss_pred ccCC---chhhhcccccccCCchhhhhccCccccccccccccccccccccccccccccccccCCCcceEEe
Confidence 3455 99999999864 367888 6654322 2233467888999999999999999888643
No 451
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=62.87 E-value=2 Score=29.85 Aligned_cols=7 Identities=29% Similarity=0.828 Sum_probs=3.0
Q ss_pred eeeeehh
Q 002278 554 VVCMVLG 560 (943)
Q Consensus 554 ~~~~~~g 560 (943)
+++.++|
T Consensus 14 Ia~~vVG 20 (44)
T 2jwa_A 14 IISAVVG 20 (44)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 3344444
No 452
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=49.59 E-value=5.3 Score=27.89 Aligned_cols=11 Identities=36% Similarity=0.404 Sum_probs=4.6
Q ss_pred eeeehhHHHHH
Q 002278 555 VCMVLGFITLL 565 (943)
Q Consensus 555 ~~~~~g~~~~~ 565 (943)
++++.|++.++
T Consensus 15 ~gVVgGv~~~~ 25 (44)
T 2ks1_B 15 TGMVGALLLLL 25 (44)
T ss_dssp HHHHHHHHHHH
T ss_pred eehhHHHHHHH
Confidence 34444444433
No 453
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=47.67 E-value=5.3 Score=27.84 Aligned_cols=9 Identities=22% Similarity=0.420 Sum_probs=3.7
Q ss_pred eeehhHHHH
Q 002278 556 CMVLGFITL 564 (943)
Q Consensus 556 ~~~~g~~~~ 564 (943)
+++.|++.+
T Consensus 15 gVVgGv~~v 23 (44)
T 2l2t_A 15 GVIGGLFIL 23 (44)
T ss_dssp HHHHHHHHH
T ss_pred eehHHHHHH
Confidence 344444443
No 454
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=46.58 E-value=22 Score=29.95 Aligned_cols=45 Identities=18% Similarity=0.160 Sum_probs=21.6
Q ss_pred cCCcCcccccCCCcCcEEEeeCCcccCcccccccccCccceeeccC
Q 002278 337 LEGPIPHNISSCTALNQFNVHGNRLSGAIPSSFRNLGSLTYLNLSR 382 (943)
Q Consensus 337 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 382 (943)
++.+...+|.+|++|+.+.+-.+ ++.+-..+|.++.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 33344445555555555555443 2224444555555555555543
No 455
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=46.29 E-value=6.1 Score=27.57 Aligned_cols=27 Identities=11% Similarity=0.145 Sum_probs=14.0
Q ss_pred eeeeeeeehhHHHHHHHHHHHHhhhhc
Q 002278 551 RTAVVCMVLGFITLLVMAAIAVYKSNQ 577 (943)
Q Consensus 551 ~~~~~~~~~g~~~~~~~~~~~~~~~~~ 577 (943)
...+++.+++++++++++++++.++++
T Consensus 14 A~gVVgGv~~~~ii~~~~~~~~RRr~~ 40 (44)
T 2ks1_B 14 ATGMVGALLLLLVVALGIGLFMRRRHI 40 (44)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred EeehhHHHHHHHHHHHHHHHHhhhhHh
Confidence 345555556666666555554444333
No 456
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=41.39 E-value=59 Score=27.22 Aligned_cols=14 Identities=36% Similarity=0.209 Sum_probs=5.9
Q ss_pred hccccccceEEEec
Q 002278 105 SISKLKQLEFLNLK 118 (943)
Q Consensus 105 ~~~~l~~L~~L~Ls 118 (943)
+|.++.+|+.+.+.
T Consensus 38 aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 38 MFSGCTALEKLILT 51 (100)
T ss_dssp SSTTCTTCCCEEEC
T ss_pred HHhccCCccEEEEc
Confidence 34444444444443
No 457
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=39.30 E-value=8.6 Score=26.78 Aligned_cols=25 Identities=12% Similarity=0.146 Sum_probs=12.2
Q ss_pred eeeeeeehhHHHHHHHHHHHHhhhh
Q 002278 552 TAVVCMVLGFITLLVMAAIAVYKSN 576 (943)
Q Consensus 552 ~~~~~~~~g~~~~~~~~~~~~~~~~ 576 (943)
..+++.+++++++++++++++.+++
T Consensus 14 ~gVVgGv~~v~ii~~~~~~~~RRRr 38 (44)
T 2l2t_A 14 AGVIGGLFILVIVGLTFAVYVRRKS 38 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred EeehHHHHHHHHHHHHHHHHhhhhh
Confidence 3455555555555544444444333
No 458
>1cja_A Protein (actin-fragmin kinase); transferase; HET: AMP; 2.90A {Physarum polycephalum} SCOP: d.144.1.3
Probab=27.61 E-value=2e+02 Score=30.02 Aligned_cols=142 Identities=14% Similarity=0.083 Sum_probs=70.7
Q ss_pred cccceEEeeeceEEEEEEEecCCceEEEEEecccCcccHHHHHHHHHHHhcCCCCCcceeeeE-----------------
Q 002278 618 LSEKYIVGYGASSTVYKCALKNSRPIAVKKLYNQYPHNLREFETELETIGSIRHRNIVSLHGY----------------- 680 (943)
Q Consensus 618 ~~~~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~----------------- 680 (943)
+..++..-.|..| ||.+.. ++..|+||-.. ....+.+-.++...=.+.-|+..-+.-.
T Consensus 71 v~~I~~s~~Gstg-vff~~t-d~~~~VVK~s~---~l~~E~l~s~LA~~LGlpiP~~Riv~~~~~E~~e~~~~L~~~~~~ 145 (342)
T 1cja_A 71 FKGIERSEKGTEG-LFFVET-ESGVFIVKRST---NIESETFCSLLCMRLGLHAPKVRVVSSNSEEGTNMLECLAAIDKS 145 (342)
T ss_dssp EEEEEECCSTTSC-EEEEEE-SSCEEEEECCT---THHHHHHHHHHHHHHTCCCCCEEEEESSSHHHHHHHHHHHHHCSS
T ss_pred eeEEEeccCCCCC-eEEEEe-CCCEEEEeCcH---HHHHHHHHHHHHHHhCCCCCCeeEEeeCcHHHHHHHHHHHHhhhh
Confidence 4444455566554 555544 47788888441 2222334444444444555542211100
Q ss_pred -----EecCCcceEEEEEccCCChhhhccCCCCCccCCHHHHHHHHHHHHHHHHHhhhCCCCC-e-EecCCCCccEEECC
Q 002278 681 -----ALSPYGNLLFYDYMVNGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPR-I-IHRDVKSSNILIDE 753 (943)
Q Consensus 681 -----~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~~~~-i-vH~Dlkp~Nill~~ 753 (943)
.......+++|+|++|..|.+.-... ....+..+....+. -+-++.++..+.+.- . .+.-=.++|||+++
T Consensus 146 ~~~l~~l~~~~~~l~meyv~G~~L~e~~~~~-~~~~f~~~~~k~LG--~Ii~FDi~InN~DR~Pl~W~n~GN~~NIL~~~ 222 (342)
T 1cja_A 146 FRVITTLANQANILLMELVRGITLNKLTTTS-APEVLTKSTMQQLG--SLMALDVIVNNSDRLPIAWTNEGNLDNIMLSE 222 (342)
T ss_dssp SCHHHHHTTCSEEEEEECCCEEESTTCCSSS-HHHHSCHHHHHHHH--HHHHHHHHHTCCSSSCSSSCSCCCGGGEEEES
T ss_pred hHHHHHhhcccceehhhhcCCCccccchhhh-hhhhcCHHHHHhhc--hhheehhhhcCCccCcccccCCCChhheEEeC
Confidence 00122456999999976665432210 01123333322211 123455665543321 1 11235899999986
Q ss_pred CCc-eeecccccccc
Q 002278 754 NFD-AHLSDFGIARC 767 (943)
Q Consensus 754 ~~~-~kl~DFGla~~ 767 (943)
++. +.++|-+.+..
T Consensus 223 ~n~~~~~IDhn~af~ 237 (342)
T 1cja_A 223 RGATVVPIDSKIIPL 237 (342)
T ss_dssp BTTCEEECSCCCCCC
T ss_pred CCCeEEEEcCCcccc
Confidence 544 89999998864
No 459
>3ox7_P MH027; urokinase-type plasminogen activator, peptidyl inhibitor, pharmacophore, hydrolase, hydrolase-hydrolase inhibitor COM; HET: PG4; 1.58A {Homo sapiens} PDB: 3oy5_P 3oy6_P
Probab=26.60 E-value=15 Score=20.41 Aligned_cols=9 Identities=56% Similarity=1.291 Sum_probs=7.1
Q ss_pred CCCCcceeE
Q 002278 24 DFCSWRGVF 32 (943)
Q Consensus 24 ~~c~w~gv~ 32 (943)
..|+|+|..
T Consensus 6 gacswrgle 14 (23)
T 3ox7_P 6 GACSWRGLE 14 (26)
T ss_pred cccccccch
Confidence 579999964
No 460
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=23.84 E-value=45 Score=22.16 Aligned_cols=20 Identities=10% Similarity=0.169 Sum_probs=10.4
Q ss_pred HHHHHHHHHhhhhccchhhh
Q 002278 564 LLVMAAIAVYKSNQQRQQLI 583 (943)
Q Consensus 564 ~~~~~~~~~~~~~~~~~~~~ 583 (943)
+.++.++...|.++++++..
T Consensus 12 ~~~ifYFl~iRPQ~Kr~K~~ 31 (37)
T 2rdd_B 12 FGLIFYFMILRPQQKRTKEH 31 (37)
T ss_dssp HHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHH
Confidence 33444555566655555543
Done!