BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002279
(943 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8LPR9|TI110_ARATH Protein TIC110, chloroplastic OS=Arabidopsis thaliana GN=TIC110
PE=1 SV=1
Length = 1016
Score = 1308 bits (3384), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 662/951 (69%), Positives = 804/951 (84%), Gaps = 24/951 (2%)
Query: 3 NSSLLT------TPTSNRPLL--FSPFL----NPSPLPKRRRFKVSFPRNRSAATSASAS 50
N SL+T +P+ PLL F P L + S RRR++VSFPR S++AS
Sbjct: 2 NPSLVTAINAPISPSPRSPLLSHFLPTLPHRFSKSECLSRRRYRVSFPR------SSAAS 55
Query: 51 AEATPTATPSDN--IWGPRKELQGIQPVVDKLSPPVRLATSAVVIAGAVFAGFKLGSKYG 108
++ +T + N I G +KEL G+QP+V+K++PPVRLATSAVV+A ++ G+ LG +
Sbjct: 56 SDQLSVSTQAKNPGIHGNKKELTGLQPIVEKMTPPVRLATSAVVLAASLATGYGLGLRLA 115
Query: 109 GGSRNVAIGGAAILGAAGGAMAYAMNAAVPEVAAKRLHDYVTDCNDPGAVKREDIEAIAS 168
G SRN+A GGAA+ GAAGGA+ YA+N+AVPEVAA LH+YV + DP +V ++D+E IA
Sbjct: 116 G-SRNIAFGGAAVAGAAGGAVVYALNSAVPEVAAISLHNYVAEFEDPASVTKDDVEKIAD 174
Query: 169 KYGVSKQDEAFNAELSEIYCRFVTSVLPPGGEDLRGDEVDKIVQFKKALGIDDPDAAAMH 228
+YGV+K DEAF AE+ +IYCR+VTSVLP G+ L+GDEV KIV+FK ALGID+PDAAAMH
Sbjct: 175 RYGVNKGDEAFQAEICDIYCRYVTSVLPTEGQSLKGDEVAKIVKFKNALGIDEPDAAAMH 234
Query: 229 VEIGRRLFRQRLEVGDRDGDMEQRWAFQKLIYVSTLVFGEASSFLLPWKRVFKVTDSQVE 288
+EIGRR+FRQRLE G+R+GD EQR AF +L+YVS LVFG+ASSFLLPWKRV KVTD+QVE
Sbjct: 235 MEIGRRIFRQRLETGEREGDAEQRRAFMRLVYVSALVFGDASSFLLPWKRVLKVTDAQVE 294
Query: 289 IAIRDNAKRLYASKLKSVGRDVDAEHIVRLREEQLSYRLSDALAEDLFREHTRKLVEENI 348
IAIR+NAK+LYA +LK VGRD++ E++V LR+ QLS++LSD LAEDLFREHTRK+V ENI
Sbjct: 295 IAIRENAKQLYAERLKLVGRDINVENLVDLRKSQLSFKLSDELAEDLFREHTRKVVVENI 354
Query: 349 VTALSILKSRTRVVKGVAQVVEELDKVLAFNNLLISLRQHPNADRFARGVGPVSLVGGEF 408
+ALSILKSRTR K +A VVEEL+KVL FNNLL+SL+ H AD+FARGVGP+SL+G E
Sbjct: 355 SSALSILKSRTRAAKSLASVVEELEKVLEFNNLLVSLKSHSEADQFARGVGPISLIGDES 414
Query: 409 DGDRKMDDLKLLYRAYVTDSLSGGRMEESKLAALNQLRNIFGLGKRESEAIIVDVTSKVY 468
D +R+MDDLKLLYRAYVTD+LSGGR+EE+KL A++QLRNI GLGKRE+EAI VDVTSK Y
Sbjct: 415 DFERRMDDLKLLYRAYVTDALSGGRLEENKLVAMSQLRNILGLGKREAEAISVDVTSKSY 474
Query: 469 RKRLGQAVSGGALEAADSKASFLQSLCEELHFDPQKASEIHEEIYRQKLQQCVADGELND 528
RKRL AVS G LEA DSKA +LQ LCEELHFD QKA IHEEIYRQKLQQCV DGEL+D
Sbjct: 475 RKRLANAVSSGDLEAQDSKAKYLQKLCEELHFDAQKAGAIHEEIYRQKLQQCVTDGELSD 534
Query: 529 EDVAALLRLRVMLCVPQQTVEAAHSDICGSLFEKVVKDAISSGVEGYDGEVKKAVRKAAH 588
++VAALLRLRVMLC+PQQTV+ AH++ICG++FEKVV+DAISSGV+GYD E +K+VRKAAH
Sbjct: 535 DNVAALLRLRVMLCIPQQTVDTAHAEICGTIFEKVVRDAISSGVDGYDAETRKSVRKAAH 594
Query: 589 GLRLTREAAMSIASKAVRRIFVIYIKRARAAENRTEAAKELKKLITFNTLVVTELVADIK 648
GLRL+RE AMSIASKAVRR+F YI+RARAAENRT++AKELKK+I FNTLVVTE+VADIK
Sbjct: 595 GLRLSRETAMSIASKAVRRVFTNYIRRARAAENRTDSAKELKKMIAFNTLVVTEMVADIK 654
Query: 649 GESSDTS-EEEPIKEEEKQTDEDEEEWESLETLKKITPSKELAEKMGKPGQTEINLKDDL 707
GESSD + EE+P+ +EK+ D+++EEW SLE+L+K P KELAEKMGKPGQTEI LKDDL
Sbjct: 655 GESSDKAPEEDPV--QEKEEDDEDEEWGSLESLRKTRPDKELAEKMGKPGQTEITLKDDL 712
Query: 708 PERDRTDLYKTYLLYCLTGEVTKIPFGASITTKKDDSEYVLLSQLGGILGLTTKEIVDVH 767
P+RDR DLYKTYLLYC+TGEVT+IPFGA ITTK+DDSEY+LL+QLGGILGL++KEIV++H
Sbjct: 713 PDRDRIDLYKTYLLYCVTGEVTRIPFGAQITTKRDDSEYLLLNQLGGILGLSSKEIVNIH 772
Query: 768 RGLAEQAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIE 827
GLAEQAFRQQAEVILADGQLTKAR+EQL+E+QKQVGLP A+K+IKNITTTKMA AIE
Sbjct: 773 VGLAEQAFRQQAEVILADGQLTKARVEQLDELQKQVGLPQPQAEKVIKNITTTKMANAIE 832
Query: 828 TAVAQGKLNIKQIRELKEASVDLDNMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKI 887
TAV QG+LNIKQIRELKEA+V LD+MI+ SLRE LFKKTV +IFSSGTGEFD EVY+ I
Sbjct: 833 TAVNQGRLNIKQIRELKEANVSLDSMIAVSLREKLFKKTVSDIFSSGTGEFDETEVYQTI 892
Query: 888 PADLSINAEKARRVVHELARNRLSNSLIQAVSLLRQKNRQGVLCQLSRCLG 938
P+DLSI+ EKA+RVVH+LA++RLSNSL+QAV+LLRQ+N +GV+ L+ L
Sbjct: 893 PSDLSIDVEKAKRVVHDLAQSRLSNSLVQAVALLRQRNSKGVVLSLNDLLA 943
>sp|O24303|TI110_PEA Protein TIC110, chloroplastic OS=Pisum sativum GN=TIC110 PE=1 SV=1
Length = 996
Score = 1219 bits (3154), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 654/940 (69%), Positives = 774/940 (82%), Gaps = 16/940 (1%)
Query: 1 MNNSSLLTTPTSNRPLLFSPFLNPSPL-PKRRRFKVSFPRNRSAATSASASAEATPTATP 59
MN S+L P+ P L P PSPL +RRRF+VS PR S++ A+
Sbjct: 1 MNPSTL--KPSHTHPSLLLP--APSPLRTQRRRFRVSLPR---------CSSDTNNPASS 47
Query: 60 SDNIWGPRKELQGIQPVVDKLSPPVRLATSAVVIAGAVFAGFKLGSKYGGGSRNVAIGGA 119
S P KEL GI+ +VDKLS P RLATSAV++AGAV AG+ LGS++GG SRN A+GGA
Sbjct: 48 SSPPQRPPKELNGIEILVDKLSSPARLATSAVIVAGAVAAGYGLGSRFGG-SRNAALGGA 106
Query: 120 AILGAAGGAMAYAMNAAVPEVAAKRLHDYVTDCNDPGAVKREDIEAIASKYGVSKQDEAF 179
LGAAGGA AYA+NAA P+VAA LH+YV +DP + REDIE IA+KYGVSKQDEAF
Sbjct: 107 VALGAAGGAAAYALNAAAPQVAAVNLHNYVAGFDDPSILTREDIEVIANKYGVSKQDEAF 166
Query: 180 NAELSEIYCRFVTSVLPPGGEDLRGDEVDKIVQFKKALGIDDPDAAAMHVEIGRRLFRQR 239
AE+ +IY FV+SV+PPGGE+L+GDEVDKIV FK +LG+DDPDAAA+H+EIGR+LFRQR
Sbjct: 167 KAEICDIYSEFVSSVIPPGGEELKGDEVDKIVNFKSSLGLDDPDAAAVHMEIGRKLFRQR 226
Query: 240 LEVGDRDGDMEQRWAFQKLIYVSTLVFGEASSFLLPWKRVFKVTDSQVEIAIRDNAKRLY 299
LEVGDR+G +EQR AFQKLIYVS +VFG+ASSFLLPWKRVFKVT+SQVE+AIRDNA+RLY
Sbjct: 227 LEVGDREGGVEQRRAFQKLIYVSNIVFGDASSFLLPWKRVFKVTESQVEVAIRDNAQRLY 286
Query: 300 ASKLKSVGRDVDAEHIVRLREEQLSYRLSDALAEDLFREHTRKLVEENIVTALSILKSRT 359
ASKLKSVGRD D +V L+E Q LSD LAE+LFREH RKLVEENI AL ILKSRT
Sbjct: 287 ASKLKSVGRDFDLGKLVTLKETQSLCCLSDELAENLFREHARKLVEENISVALGILKSRT 346
Query: 360 RVVKGVAQVVEELDKVLAFNNLLISLRQHPNADRFARGVGPVSLVGGEFDGDRKMDDLKL 419
R V GV+QVVEE++KVLAFN+LLIS + H + DR ARGVGPVSLVGGE+D DRK++DLKL
Sbjct: 347 RAVPGVSQVVEEIEKVLAFNDLLISFKNHSDIDRLARGVGPVSLVGGEYDADRKIEDLKL 406
Query: 420 LYRAYVTDSLSGGRMEESKLAALNQLRNIFGLGKRESEAIIVDVTSKVYRKRLGQAVSGG 479
LYRAYV+D+LS GRME++K AALNQL+NIFGLGKRE+EAI++D+T KVYRKRLGQ VS G
Sbjct: 407 LYRAYVSDALSSGRMEDNKFAALNQLKNIFGLGKREAEAILLDITRKVYRKRLGQTVSSG 466
Query: 480 ALEAADSKASFLQSLCEELHFDPQKASEIHEEIYRQKLQQCVADGELNDEDVAALLRLRV 539
LE ADSKA+FLQ+LC+ELHFDPQKASE+HEEIYRQKLQQCVADGEL DE+VAALL+LRV
Sbjct: 467 ELEMADSKAAFLQNLCDELHFDPQKASELHEEIYRQKLQQCVADGELTDENVAALLKLRV 526
Query: 540 MLCVPQQTVEAAHSDICGSLFEKVVKDAISSGVEGYDGEVKKAVRKAAHGLRLTREAAMS 599
MLCVPQQTVEAAH++ICG+LFEK+VKDAI+SGV+GYD E KK+VRKAAHGLRLT+E A+S
Sbjct: 527 MLCVPQQTVEAAHAEICGNLFEKIVKDAIASGVDGYDDETKKSVRKAAHGLRLTKETALS 586
Query: 600 IASKAVRRIFVIYIKRARAAENRTEAAKELKKLITFNTLVVTELVADIKGESSDTSEEEP 659
IASKAVR++F+ Y+KR+R+A+ E+AKELKKLI FNTLVVT+LV DIKGES D EEP
Sbjct: 587 IASKAVRKMFITYVKRSRSAKGNGESAKELKKLIAFNTLVVTKLVEDIKGESPDVKIEEP 646
Query: 660 IKEEEKQTDEDEEEWESLETLKKITPSKELA-EKMGKPGQTEINLKDDLPERDRTDLYKT 718
EE ++ E EE + + + + + A K GK I LKDDLPE+DR DLYKT
Sbjct: 647 KIEEPEEIRESEEYEMRITSDTQENKTGQRACRKDGKAWSDRITLKDDLPEKDRADLYKT 706
Query: 719 YLLYCLTGEVTKIPFGASITTKKDDSEYVLLSQLGGILGLTTKEIVDVHRGLAEQAFRQQ 778
+L YCLTG+V +IPFG I KKDD+EY+ L+QLGGILGLT K I+DVHRGLAEQAFR+Q
Sbjct: 707 FLTYCLTGDVVRIPFGVEIKKKKDDTEYIYLNQLGGILGLTGKVIMDVHRGLAEQAFRKQ 766
Query: 779 AEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIK 838
AEV+LADGQLTKAR+EQL ++QK++GL EYAQKIIKNITTTKMAAAIETAV QGKLN+K
Sbjct: 767 AEVLLADGQLTKARVEQLGKMQKEIGLSQEYAQKIIKNITTTKMAAAIETAVTQGKLNMK 826
Query: 839 QIRELKEASVDLDNMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKA 898
QIRELKE++VDLD+M+S SLRE +FKKTV +IFSSGTGEFD EEVYEKIP DL+IN EKA
Sbjct: 827 QIRELKESNVDLDSMVSVSLRETIFKKTVGDIFSSGTGEFDEEEVYEKIPLDLNINKEKA 886
Query: 899 RRVVHELARNRLSNSLIQAVSLLRQKNRQGVLCQLSRCLG 938
R VV ELA+NRLSNSLIQAV+LLRQ+N +GV+ L+ L
Sbjct: 887 RGVVCELAQNRLSNSLIQAVALLRQRNHKGVVFSLNNLLA 926
>sp|E0VSP9|GATA_PEDHC Glutamyl-tRNA(Gln) amidotransferase subunit A, mitochondrial
OS=Pediculus humanus subsp. corporis GN=gatA PE=3 SV=1
Length = 496
Score = 38.5 bits (88), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Query: 47 ASASAEATPTATPSDNIWGPRKELQGIQPVVDKLSPPVRLATSAVVIAGAVFAGFKLGSK 106
A S T P+ NIWG R IQ D P SAV +A + G LGS
Sbjct: 124 AMGSGTTTSIFGPTKNIWGSRFSNLCIQEKNDWFIPGGSSGGSAVAVASGICLG-ALGSD 182
Query: 107 YGGGSRNVA 115
GG RN A
Sbjct: 183 TGGSCRNPA 191
>sp|Q3MHG0|COG4_BOVIN Conserved oligomeric Golgi complex subunit 4 OS=Bos taurus GN=COG4
PE=2 SV=1
Length = 785
Score = 35.4 bits (80), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 58/113 (51%), Gaps = 14/113 (12%)
Query: 802 QVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEAS----VDLDNMISES 857
++G P+ Q I + +T+ + + +++ QGK + K I EA V L+N+ E
Sbjct: 498 RMGFPATTLQDIQRGVTSA--VSIMHSSLQQGKFDTKGIESTDEAKLSFLVTLNNV--EV 553
Query: 858 LRENL--FKKTVD----EIFSSGTGEFDAEEVYEKIPADLSINAEKARRVVHE 904
EN+ KKT++ ++FS G G A+ ++ +DL+ + K R ++ E
Sbjct: 554 CSENISTLKKTLESDCTKLFSQGIGGEQAQAKFDSCLSDLAAVSGKFRDLLQE 606
>sp|Q5R7R6|COG4_PONAB Conserved oligomeric Golgi complex subunit 4 OS=Pongo abelii
GN=COG4 PE=2 SV=1
Length = 785
Score = 34.7 bits (78), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 57/113 (50%), Gaps = 14/113 (12%)
Query: 802 QVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEAS----VDLDNMISES 857
++G P+ Q I + +T+ + +++ QGK + K I EA V L+N+ E
Sbjct: 498 RMGFPATTFQDIQRGVTSA--VNIMHSSLQQGKFDTKGIESTDEAKMSFLVTLNNV--EV 553
Query: 858 LRENL--FKKTVD----EIFSSGTGEFDAEEVYEKIPADLSINAEKARRVVHE 904
EN+ KKT++ ++FS G G A+ ++ +DL+ + K R ++ E
Sbjct: 554 CSENISTLKKTLESDCTKLFSQGIGGEQAQAKFDSCLSDLAAVSNKFRDLLQE 606
>sp|Q9H9E3|COG4_HUMAN Conserved oligomeric Golgi complex subunit 4 OS=Homo sapiens
GN=COG4 PE=1 SV=3
Length = 785
Score = 34.7 bits (78), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 57/113 (50%), Gaps = 14/113 (12%)
Query: 802 QVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEAS----VDLDNMISES 857
++G P+ Q I + +T+ + +++ QGK + K I EA V L+N+ E
Sbjct: 498 RMGFPATTFQDIQRGVTSA--VNIMHSSLQQGKFDTKGIESTDEAKMSFLVTLNNV--EV 553
Query: 858 LRENL--FKKTVD----EIFSSGTGEFDAEEVYEKIPADLSINAEKARRVVHE 904
EN+ KKT++ ++FS G G A+ ++ +DL+ + K R ++ E
Sbjct: 554 CSENISTLKKTLESDCTKLFSQGIGGEQAQAKFDSCLSDLAAVSNKFRDLLQE 606
>sp|Q8R1U1|COG4_MOUSE Conserved oligomeric Golgi complex subunit 4 OS=Mus musculus
GN=Cog4 PE=2 SV=1
Length = 785
Score = 34.7 bits (78), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 57/113 (50%), Gaps = 14/113 (12%)
Query: 802 QVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEAS----VDLDNMISES 857
++G P+ Q I + +T+ + +++ QGK + K I EA V L+N+ E
Sbjct: 498 RMGFPATTLQDIQRGVTSA--VNIMHSSLQQGKFDTKGIESTDEAKLSFLVTLNNV--EV 553
Query: 858 LRENL--FKKTVD----EIFSSGTGEFDAEEVYEKIPADLSINAEKARRVVHE 904
EN+ KKT++ ++FS G G A+ ++ +DL+ + K R ++ E
Sbjct: 554 CSENISTLKKTLESDCTKLFSQGIGGEQAQAKFDSCLSDLAAVSNKFRDLLQE 606
>sp|Q1MPL7|PNP_LAWIP Polyribonucleotide nucleotidyltransferase OS=Lawsonia
intracellularis (strain PHE/MN1-00) GN=pnp PE=3 SV=1
Length = 736
Score = 33.5 bits (75), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 30/139 (21%)
Query: 734 GASITTKKDDSEYVLLSQLGG-----------ILGLTTKEIVDVHR-----GLAEQAFRQ 777
G ++ K+D ++++L+ + G I G TTK I V GL R+
Sbjct: 470 GVAMGLIKEDDQFIVLTDIIGDEDAFGDMDFKIAG-TTKGITAVQMDIKITGLTTDVMRK 528
Query: 778 QAEVILADGQLTKARIEQLNEVQKQVGLP----SEYAQKIIKNITTTKMAAAIETAVAQG 833
E Q +ARI L+E+ K + +P S+YA + + + AI + G
Sbjct: 529 AME------QAREARIHILSEMAKALDVPRSNLSQYAPQHAELVVNPD---AIRMIIGPG 579
Query: 834 KLNIKQIRELKEASVDLDN 852
NIKQI + A++D+++
Sbjct: 580 GKNIKQITTVTGAAIDIND 598
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 325,832,812
Number of Sequences: 539616
Number of extensions: 13689955
Number of successful extensions: 76856
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 223
Number of HSP's that attempted gapping in prelim test: 74831
Number of HSP's gapped (non-prelim): 1348
length of query: 943
length of database: 191,569,459
effective HSP length: 127
effective length of query: 816
effective length of database: 123,038,227
effective search space: 100399193232
effective search space used: 100399193232
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 66 (30.0 bits)