Query 002279
Match_columns 943
No_of_seqs 43 out of 45
Neff 3.6
Searched_HMMs 46136
Date Thu Mar 28 20:31:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002279.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002279hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05099 TerB: Tellurite resis 95.4 0.041 8.8E-07 52.4 6.8 113 772-900 24-137 (140)
2 cd07311 terB_like_1 tellurium 94.1 0.64 1.4E-05 47.0 11.7 118 776-926 28-145 (150)
3 cd07313 terB_like_2 tellurium 93.4 1.2 2.6E-05 40.7 11.2 97 779-891 7-104 (104)
4 cd07316 terB_like_DjlA N-termi 89.0 1.5 3.2E-05 40.0 7.1 99 778-892 6-106 (106)
5 PF03735 ENT: ENT domain; Int 87.6 7.1 0.00015 35.7 10.2 66 768-833 6-71 (73)
6 cd07316 terB_like_DjlA N-termi 87.5 7.6 0.00016 35.4 10.7 95 429-542 11-106 (106)
7 PF05099 TerB: Tellurite resis 87.1 2.5 5.4E-05 40.4 7.6 115 417-551 23-138 (140)
8 cd07176 terB tellurite resista 86.4 6.5 0.00014 35.8 9.6 107 773-893 4-111 (111)
9 cd07311 terB_like_1 tellurium 86.3 11 0.00023 38.4 11.8 98 707-817 17-134 (150)
10 PRK09430 djlA Dna-J like membr 83.8 50 0.0011 36.4 16.4 160 765-941 49-229 (267)
11 PF04391 DUF533: Protein of un 83.8 9 0.00019 40.4 10.4 110 416-555 78-187 (188)
12 cd07176 terB tellurite resista 83.7 13 0.00028 33.8 10.2 98 428-543 13-111 (111)
13 cd07313 terB_like_2 tellurium 83.1 14 0.0003 33.9 10.2 92 430-541 12-104 (104)
14 PRK09430 djlA Dna-J like membr 80.9 71 0.0015 35.2 16.3 109 430-556 68-176 (267)
15 cd07177 terB_like tellurium re 78.6 47 0.001 29.4 11.9 99 777-891 5-104 (104)
16 PF08429 PLU-1: PLU-1-like pro 73.6 1.5E+02 0.0033 32.8 19.9 180 756-938 98-291 (335)
17 PF07216 LcrG: LcrG protein; 67.5 11 0.00024 36.0 5.2 45 777-824 12-56 (93)
18 TIGR02573 LcrG_PcrG type III s 65.7 15 0.00032 35.0 5.5 50 777-829 9-58 (90)
19 cd07177 terB_like tellurium re 62.8 72 0.0016 28.3 9.3 95 427-541 9-104 (104)
20 TIGR02675 tape_meas_nterm tape 61.1 26 0.00056 31.7 6.1 74 749-839 1-74 (75)
21 PHA00666 putative protease 57.3 26 0.00057 38.3 6.4 62 785-848 93-160 (233)
22 PF03735 ENT: ENT domain; Int 55.6 90 0.0019 28.7 8.6 50 506-555 6-55 (73)
23 COG2979 Uncharacterized protei 52.7 1.1E+02 0.0024 33.5 10.0 111 417-557 110-220 (225)
24 PRK11280 hypothetical protein; 51.9 14 0.0003 38.7 3.3 33 97-129 72-106 (170)
25 PF10025 DUF2267: Uncharacteri 51.5 94 0.002 30.2 8.7 90 793-902 3-94 (125)
26 COG4103 Uncharacterized protei 49.0 1.9E+02 0.004 30.1 10.5 111 770-898 29-140 (148)
27 KOG2534 DNA polymerase IV (fam 48.8 55 0.0012 37.6 7.5 99 343-472 10-118 (353)
28 smart00501 BRIGHT BRIGHT, ARID 48.6 10 0.00022 34.8 1.6 50 144-193 36-86 (93)
29 PF13488 Gly-zipper_Omp: Glyci 48.1 24 0.00052 29.7 3.5 38 97-135 7-44 (46)
30 COG3793 TerB Tellurite resista 47.0 43 0.00094 34.4 5.8 78 707-809 62-141 (144)
31 PRK10510 putative outer membra 45.7 15 0.00033 39.2 2.5 40 99-140 49-88 (219)
32 COG1405 SUA7 Transcription ini 44.0 4.4E+02 0.0096 29.8 13.5 107 792-908 100-221 (285)
33 TIGR02675 tape_meas_nterm tape 42.8 83 0.0018 28.5 6.4 71 798-879 3-73 (75)
34 PF05818 TraT: Enterobacterial 42.5 22 0.00048 38.5 3.1 28 98-126 95-122 (215)
35 PF03280 Lipase_chap: Proteoba 41.0 2.7E+02 0.0059 29.3 10.8 94 771-868 57-158 (195)
36 PRK11235 bifunctional antitoxi 40.4 57 0.0012 30.5 5.0 52 490-548 15-73 (80)
37 PF04391 DUF533: Protein of un 39.9 1.8E+02 0.0039 31.0 9.2 72 743-817 98-187 (188)
38 COG5126 FRQ1 Ca2+-binding prot 38.8 1.1E+02 0.0025 31.8 7.4 135 704-887 11-154 (160)
39 TIGR01446 DnaD_dom DnaD and ph 38.1 2.1E+02 0.0045 24.9 8.0 53 779-844 5-57 (73)
40 PF05818 TraT: Enterobacterial 37.7 20 0.00042 38.9 1.9 45 95-140 88-132 (215)
41 PF01388 ARID: ARID/BRIGHT DNA 37.5 11 0.00024 34.1 0.0 49 144-192 40-89 (92)
42 KOG0034 Ca2+/calmodulin-depend 36.4 3.6E+02 0.0079 28.6 10.8 131 746-888 11-177 (187)
43 cd07178 terB_like_YebE telluri 36.2 3.8E+02 0.0082 25.3 9.8 94 420-543 2-95 (95)
44 COG3413 Predicted DNA binding 35.8 69 0.0015 33.6 5.5 51 562-614 162-212 (215)
45 PRK13731 conjugal transfer sur 34.6 23 0.0005 39.0 1.9 7 20-26 43-49 (243)
46 cd07178 terB_like_YebE telluri 34.6 2.6E+02 0.0056 26.4 8.5 92 776-893 4-95 (95)
47 KOG4675 Uncharacterized conser 34.2 2.9E+02 0.0063 31.3 10.0 77 768-844 13-90 (273)
48 PF13436 Gly-zipper_OmpA: Glyc 34.1 47 0.001 32.5 3.7 21 99-119 62-82 (118)
49 PRK04019 rplP0 acidic ribosoma 33.8 1.5E+02 0.0033 33.6 8.1 42 475-529 157-199 (330)
50 PF10785 NADH-u_ox-rdase: NADH 31.1 92 0.002 29.2 4.9 63 73-136 13-78 (86)
51 PF12949 HeH: HeH/LEM domain; 30.5 44 0.00095 26.9 2.3 34 155-188 1-34 (35)
52 cd00076 H4 Histone H4, one of 30.4 80 0.0017 29.8 4.4 46 144-195 6-51 (85)
53 PRK13731 conjugal transfer sur 30.4 47 0.001 36.7 3.3 9 68-76 63-71 (243)
54 KOG3324 Mitochondrial import i 29.6 45 0.00097 36.0 2.9 37 96-132 158-196 (206)
55 PLN03094 Substrate binding sub 29.3 93 0.002 36.2 5.6 35 3-44 4-38 (370)
56 PF14620 YPEB: YpeB sporulatio 29.1 9.6E+02 0.021 27.9 13.5 136 755-909 80-223 (361)
57 PRK00143 mnmA tRNA-specific 2- 28.8 27 0.00059 39.5 1.3 41 157-197 165-209 (346)
58 PRK01294 lipase chaperone; Pro 27.6 94 0.002 35.6 5.2 57 134-192 80-136 (336)
59 COG2511 GatE Archaeal Glu-tRNA 27.3 8.8E+02 0.019 30.3 13.0 113 797-915 461-591 (631)
60 KOG3811 Transcription factor A 27.3 1.6E+02 0.0034 35.0 6.9 80 289-377 250-349 (434)
61 PRK13676 hypothetical protein; 26.9 5.7E+02 0.012 24.5 10.2 88 743-833 19-107 (114)
62 PRK06253 O-phosphoseryl-tRNA s 26.7 1.1E+02 0.0023 37.4 5.6 95 835-937 107-202 (529)
63 PF01923 Cob_adeno_trans: Coba 26.1 5.3E+02 0.011 26.4 9.7 110 796-938 32-152 (163)
64 PRK01294 lipase chaperone; Pro 24.8 1.1E+03 0.024 27.2 14.0 94 771-868 183-284 (336)
65 TIGR02698 CopY_TcrY copper tra 24.6 75 0.0016 31.3 3.3 99 743-845 4-112 (130)
66 COG5114 Histone acetyltransfer 23.4 1.1E+02 0.0024 35.4 4.6 44 490-536 366-409 (432)
67 TIGR00470 sepS O-phosphoseryl- 23.0 1.5E+02 0.0032 36.1 5.7 64 835-906 107-170 (533)
68 cd03021 DsbA_GSTK DsbA family, 22.9 3.5E+02 0.0075 28.1 7.9 64 769-833 109-176 (209)
69 PF09548 Spore_III_AB: Stage I 22.7 2.9E+02 0.0062 28.4 7.2 58 510-567 86-143 (170)
70 PTZ00015 histone H4; Provision 22.6 1.2E+02 0.0025 29.7 4.0 44 152-195 25-68 (102)
71 COG3133 SlyB Outer membrane li 22.5 61 0.0013 33.4 2.3 42 94-136 66-109 (154)
72 PF11264 ThylakoidFormat: Thyl 22.4 1.6E+02 0.0035 32.1 5.4 133 395-528 46-201 (216)
73 PLN00035 histone H4; Provision 22.1 1.3E+02 0.0029 29.4 4.4 46 144-195 22-67 (103)
74 PF11272 DUF3072: Protein of u 21.9 2.1E+02 0.0045 25.6 5.0 36 784-819 12-53 (57)
75 PF05527 DUF758: Domain of unk 21.8 2E+02 0.0044 30.8 6.0 98 769-881 8-112 (186)
76 PF12833 HTH_18: Helix-turn-he 21.6 3.2E+02 0.007 23.7 6.4 45 799-843 1-54 (81)
77 smart00526 H15 Domain in histo 21.6 2.6E+02 0.0057 24.2 5.7 60 465-528 4-63 (66)
78 PF13436 Gly-zipper_OmpA: Glyc 21.2 1.7E+02 0.0038 28.7 5.0 33 97-130 64-96 (118)
79 KOG3816 Cell differentiation r 21.2 25 0.00055 41.1 -0.8 12 204-215 117-128 (526)
80 PF03847 TFIID_20kDa: Transcri 21.1 2.2E+02 0.0048 25.7 5.2 37 324-361 15-51 (68)
81 PF08766 DEK_C: DEK C terminal 21.0 1.5E+02 0.0033 25.0 4.0 45 144-191 8-53 (54)
82 PLN00047 photosystem II biogen 21.0 4.2E+02 0.009 30.3 8.4 109 703-827 115-246 (283)
83 COG0502 BioB Biotin synthase a 20.9 65 0.0014 37.0 2.4 57 806-866 116-172 (335)
84 PF01031 Dynamin_M: Dynamin ce 20.3 1.2E+03 0.025 25.7 12.9 167 746-938 93-267 (295)
No 1
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=95.44 E-value=0.041 Score=52.40 Aligned_cols=113 Identities=23% Similarity=0.383 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHHHHH-HHhCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHcccch
Q 002279 772 EQAFRQQAEVILADGQLTKARIEQLNEVQ-KQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDL 850 (943)
Q Consensus 772 eqAyrqqaeqiL~dG~Lt~akae~L~eiq-~qLgLp~e~AqKiIK~it~~Kms~~ie~~va~GkL~~~~V~eLke~gV~L 850 (943)
..+++=.+..+.+||.++++..+.+.++. .+.+++++..+.++..+...+-. ..+..+. --.|
T Consensus 24 ~a~~~ll~~~a~aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~~~~~~------~~~l 87 (140)
T PF05099_consen 24 EALLALLAAVAKADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQE----------PIDLEEL------LREL 87 (140)
T ss_dssp HHHHHHHHHHHHTTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHH----------CCHHHHH------HHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhc----------cccHHHH------HHHH
Confidence 34455567788899999999999998877 99999999999887765443332 2222222 2235
Q ss_pred hhhccHHHHHHHHHHHHHHHHhcCCCCCchHHHHHhcccccCCCHHHHHH
Q 002279 851 DNMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKARR 900 (943)
Q Consensus 851 ~~~ised~R~~LFrK~V~e~issGtg~fD~ee~~~kip~dL~I~~ekAk~ 900 (943)
.+.++.+.|..+++..+.=+.++|...-.+.+++.++...|+|+.+.-+.
T Consensus 88 ~~~~~~~~r~~ll~~l~~ia~ADG~~~~~E~~~l~~ia~~L~i~~~~~~~ 137 (140)
T PF05099_consen 88 RDSLSPEEREDLLRMLIAIAYADGEISPEEQEFLRRIAEALGISEEDFQR 137 (140)
T ss_dssp CTS--HHHHHHHHHHHHHHCTCTTC-SCCHHHHHHHHHHHCTS-SS----
T ss_pred HHhhchHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCHHHHhc
Confidence 55566999999999999999999999999999999999999999876554
No 2
>cd07311 terB_like_1 tellurium resistance terB-like protein, subgroup 1. This family includes several uncharacterized bacterial proteins. The prototype of this CD is tellurite resistance protein from Nostoc punctiforme that belongs to COG3793. Its precise biological function and its mechanism responsible for tellurium resistance still remains rather poorly understood.
Probab=94.15 E-value=0.64 Score=46.96 Aligned_cols=118 Identities=14% Similarity=0.123 Sum_probs=83.2
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHcccchhhhcc
Q 002279 776 RQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDNMIS 855 (943)
Q Consensus 776 rqqaeqiL~dG~Lt~akae~L~eiq~qLgLp~e~AqKiIK~it~~Kms~~ie~~va~GkL~~~~V~eLke~gV~L~~~is 855 (943)
+..+..+-+||+.++++++....+..++||+++...++++. . ..+.+..-.. ...+ +.
T Consensus 28 ~~Ll~iAkADG~Vse~Ei~~~~~~m~~~~L~~e~~~~aie~---------------~---~~~~L~~~~~-~~~~---~~ 85 (150)
T cd07311 28 KALLVCAKGDGVISPEERDWAIGYAAARGGDADMVEELKEY---------------T---ADEDLEEVDF-RSPN---IK 85 (150)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHh---------------C---ccccHHHHHH-HHHh---cc
Confidence 34556678999999999999999999999999997777766 1 1111111110 0000 44
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCchHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch
Q 002279 856 ESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKARRVVHELARNRLSNSLIQAVSLLRQKNR 926 (943)
Q Consensus 856 ed~R~~LFrK~V~e~issGtg~fD~ee~~~kip~dL~I~~ekAk~Iv~~~a~~R~~n~LvQAVa~LRQrk~ 926 (943)
.+.|.-|.. .+.=++.+|.-+--+++++.++..-|+|+...-..+.+.-++++ .|||++.
T Consensus 86 ~~~~~ll~~-~l~vA~ADG~l~~~E~~lL~~iA~~LGis~~~~~~l~~~~~~~~----------~~~~~r~ 145 (150)
T cd07311 86 SSRRALLYD-AIQVCAADGELSPGEVAAVRKAASLLGISEDEVQKLEEIYFQEA----------SLRQKRL 145 (150)
T ss_pred hhHHHHHHH-HHHHHHcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH----------HHHHHHH
Confidence 555555544 77889999988777889999999999999988777766633332 6777764
No 3
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=93.37 E-value=1.2 Score=40.71 Aligned_cols=97 Identities=15% Similarity=0.241 Sum_probs=73.9
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHH-hCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHcccchhhhccHH
Q 002279 779 AEVILADGQLTKARIEQLNEVQKQ-VGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDNMISES 857 (943)
Q Consensus 779 aeqiL~dG~Lt~akae~L~eiq~q-LgLp~e~AqKiIK~it~~Kms~~ie~~va~GkL~~~~V~eLke~gV~L~~~ised 857 (943)
...+.+||+.+++.++.+..+-.+ +|++++....+++.....+- ...+..+.... +....+.+
T Consensus 7 ~~vA~aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~----------~~~~~~~~~~~------~~~~~~~~ 70 (104)
T cd07313 7 VEVARADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEE----------EAPDLYEFTSL------IKEHFDYE 70 (104)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHH----------hCCCHHHHHHH------HHHhCCHH
Confidence 567889999999999999999777 79999999998875544332 12344443332 22334889
Q ss_pred HHHHHHHHHHHHHHhcCCCCCchHHHHHhccccc
Q 002279 858 LRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADL 891 (943)
Q Consensus 858 ~R~~LFrK~V~e~issGtg~fD~ee~~~kip~dL 891 (943)
+|..+-+-.+.=++++|..+-.++++++++..-|
T Consensus 71 ~r~~~l~~L~~vA~ADG~~~~~E~~~l~~ia~~L 104 (104)
T cd07313 71 ERLELVEALWEVAYADGELDEYEEHLIRRVADLL 104 (104)
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhC
Confidence 9999999999999999999888889998886543
No 4
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=88.98 E-value=1.5 Score=40.01 Aligned_cols=99 Identities=17% Similarity=0.241 Sum_probs=72.7
Q ss_pred HHHHHhhcCCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHcccchhhh--cc
Q 002279 778 QAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDNM--IS 855 (943)
Q Consensus 778 qaeqiL~dG~Lt~akae~L~eiq~qLgLp~e~AqKiIK~it~~Kms~~ie~~va~GkL~~~~V~eLke~gV~L~~~--is 855 (943)
.+..+.+||..|++.++++..+-+++.+++....++++-+...+- .+ .+..++... +... .+
T Consensus 6 l~~vA~aDG~v~~~E~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~---------~~-~~~~~~~~~------l~~~~~~~ 69 (106)
T cd07316 6 MGKLAKADGRVSEAEIQAARALMDQMGLDAEARREAIRLFNEGKE---------SD-FGLEEYARQ------FRRACGGR 69 (106)
T ss_pred HhHHHhccCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---------CC-CCHHHHHHH------HHHHHCCC
Confidence 467788999999999999999999999886666666554443221 11 223332221 2222 57
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCchHHHHHhcccccC
Q 002279 856 ESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLS 892 (943)
Q Consensus 856 ed~R~~LFrK~V~e~issGtg~fD~ee~~~kip~dL~ 892 (943)
+++|..+++-.+.=+.++|..+=.++++++++..-||
T Consensus 70 ~~~r~~~l~~l~~vA~ADG~~~~~E~~~l~~ia~~Lg 106 (106)
T cd07316 70 PELLLQLLEFLFQIAYADGELSEAERELLRRIARLLG 106 (106)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Confidence 8999999999999999999998788899999877664
No 5
>PF03735 ENT: ENT domain; InterPro: IPR005491 This entry represents a protein regulator which is able to repress transcription, possibly via its interaction with a multi protein chromatin re-modeling complex that modifies the chromatin. Its interaction with BRCA2 suggests that it may play a central role in the DNA repair function of BRCA2 []. ; PDB: 1UZ3_B 1UTU_B 2FMM_E.
Probab=87.61 E-value=7.1 Score=35.66 Aligned_cols=66 Identities=17% Similarity=0.254 Sum_probs=51.7
Q ss_pred HhHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 002279 768 RGLAEQAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQG 833 (943)
Q Consensus 768 ~~laeqAyrqqaeqiL~dG~Lt~akae~L~eiq~qLgLp~e~AqKiIK~it~~Kms~~ie~~va~G 833 (943)
..|=-.||..-+...-+.|.|+.+|-..|.+|++.|+.+.+.=..+++.+........|......|
T Consensus 6 ~~LE~eAY~svl~Af~Aqg~lsweke~lLt~Lr~~L~IS~e~H~~~l~~~~~De~l~~ir~~~~~~ 71 (73)
T PF03735_consen 6 HRLELEAYSSVLRAFRAQGPLSWEKEKLLTELRKELNISDEEHREELRRAVSDEQLKTIREWRQGG 71 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHSS--HHHHHHHHHHHHHTT--HHHHHHHHHHHHH-HHHHHHHHHHH-S
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHhccHHHHHHHHHhhcC
Confidence 346678999999999999999999999999999999999999999999999887766555544433
No 6
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=87.53 E-value=7.6 Score=35.43 Aligned_cols=95 Identities=20% Similarity=0.322 Sum_probs=67.5
Q ss_pred CCCCCccchHHHHHHHHHHHhCCCcchhhHHHHHHhhHHHHHHHHhhhcCCcccccCChhHHHHhhhhhccCChhhHHHH
Q 002279 429 LSGGRMEESKLAALNQLRNIFGLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLCEELHFDPQKASEI 508 (943)
Q Consensus 429 Ls~G~l~~~~~~~L~~LknifGLg~~EAe~I~~dV~~kiYR~rL~~~v~sg~le~a~SkA~~LQ~lc~~L~Fdpe~A~~i 508 (943)
..+|++++++...+..+=.-+++...+... ....|++.. +...+...+.+.+++.++.+|+....+
T Consensus 11 ~aDG~v~~~E~~~i~~~l~~~~~~~~~~~~-----~~~~~~~~~---------~~~~~~~~~~~~l~~~~~~~~~~r~~~ 76 (106)
T cd07316 11 KADGRVSEAEIQAARALMDQMGLDAEARRE-----AIRLFNEGK---------ESDFGLEEYARQFRRACGGRPELLLQL 76 (106)
T ss_pred hccCCcCHHHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHhC---------cCCCCHHHHHHHHHHHHCCCHHHHHHH
Confidence 379999999999999987777764222211 123333322 222566779999999999999976666
Q ss_pred HHHHHHHHHHHHh-hcCCCChHhHHHHHhhHHhhc
Q 002279 509 HEEIYRQKLQQCV-ADGELNDEDVAALLRLRVMLC 542 (943)
Q Consensus 509 heeIYr~kL~q~V-sd~~Ltdedv~aLlr~R~~Lc 542 (943)
-+.++ .+. +||.++..+...|.++...|+
T Consensus 77 l~~l~-----~vA~ADG~~~~~E~~~l~~ia~~Lg 106 (106)
T cd07316 77 LEFLF-----QIAYADGELSEAERELLRRIARLLG 106 (106)
T ss_pred HHHHH-----HHHHHcCCCCHHHHHHHHHHHHHcC
Confidence 55555 333 599999999999999988775
No 7
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=87.10 E-value=2.5 Score=40.36 Aligned_cols=115 Identities=23% Similarity=0.298 Sum_probs=68.1
Q ss_pred HHHHHHHHHhccCCCCCccchHHHHHHHHH-HHhCCCcchhhHHHHHHhhHHHHHHHHhhhcCCcccccCChhHHHHhhh
Q 002279 417 LKLLYRAYVTDSLSGGRMEESKLAALNQLR-NIFGLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLC 495 (943)
Q Consensus 417 LK~LYraYL~e~Ls~G~l~~~~~~~L~~Lk-nifGLg~~EAe~I~~dV~~kiYR~rL~~~v~sg~le~a~SkA~~LQ~lc 495 (943)
..-+++.-+.=+..+|.++.+|...|.++= +.+|+.+.+...++-...... .+ .. -++++|
T Consensus 23 ~~a~~~ll~~~a~aDG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~-~~-------------~~----~~~~~~ 84 (140)
T PF05099_consen 23 REALLALLAAVAKADGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELK-QE-------------PI----DLEELL 84 (140)
T ss_dssp HHHHHHHHHHHHHTTSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHH-HH-------------CC----HHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH-hc-------------cc----cHHHHH
Confidence 333444333334499999999999887744 888999888776643322211 11 01 123333
Q ss_pred hhccCChhhHHHHHHHHHHHHHHHHhhcCCCChHhHHHHHhhHHhhccchHHHHHH
Q 002279 496 EELHFDPQKASEIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCVPQQTVEAA 551 (943)
Q Consensus 496 ~~L~Fdpe~A~~iheeIYr~kL~q~Vsd~~Ltdedv~aLlr~R~~LcIp~~~V~~a 551 (943)
..++= ....+..+.+++.-..=+.+||.+++++...|-++...|+||.+.++.+
T Consensus 85 ~~l~~--~~~~~~r~~ll~~l~~ia~ADG~~~~~E~~~l~~ia~~L~i~~~~~~~~ 138 (140)
T PF05099_consen 85 RELRD--SLSPEEREDLLRMLIAIAYADGEISPEEQEFLRRIAEALGISEEDFQRI 138 (140)
T ss_dssp HHHCT--S--HHHHHHHHHHHHHHCTCTTC-SCCHHHHHHHHHHHCTS-SS-----
T ss_pred HHHHH--hhchHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCCHHHHhcc
Confidence 33321 1125556667766666666799999999999999999999999887654
No 8
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=86.42 E-value=6.5 Score=35.78 Aligned_cols=107 Identities=18% Similarity=0.223 Sum_probs=75.5
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHH-HhCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHcccchh
Q 002279 773 QAFRQQAEVILADGQLTKARIEQLNEVQK-QVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLD 851 (943)
Q Consensus 773 qAyrqqaeqiL~dG~Lt~akae~L~eiq~-qLgLp~e~AqKiIK~it~~Kms~~ie~~va~GkL~~~~V~eLke~gV~L~ 851 (943)
-++.=-+..+.+||..+.+.++.+.++=. ..+|++....+++.-+..-.-. . ...+..++.. .+.
T Consensus 4 a~~~l~~~va~aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~~~~~~~~~~~~-----~---~~~~~~~~~~------~~~ 69 (111)
T cd07176 4 ALVALAALVAAADGDIDDAELQAIEALLRSLPVLSGFDRERLIALLDKLLAL-----L---RPEGLAALLK------AAA 69 (111)
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHcCccccCCCHHHHHHHHHHHHHH-----H---HHhhHHHHHH------HHH
Confidence 34455577889999999998888887765 7888876666666554443221 0 0111222222 233
Q ss_pred hhccHHHHHHHHHHHHHHHHhcCCCCCchHHHHHhcccccCC
Q 002279 852 NMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSI 893 (943)
Q Consensus 852 ~~ised~R~~LFrK~V~e~issGtg~fD~ee~~~kip~dL~I 893 (943)
...+.++|..+|+-.+.=+.++|..+-.+.++++++...|+|
T Consensus 70 ~~~~~~~r~~~~~~~~~ia~aDG~~~~~E~~~L~~l~~~Lgl 111 (111)
T cd07176 70 KLLPPELRETAFAVAVDIAAADGEVDPEERAVLEKLYRALGL 111 (111)
T ss_pred HhCCHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCc
Confidence 445589999999999999999999888888999999998886
No 9
>cd07311 terB_like_1 tellurium resistance terB-like protein, subgroup 1. This family includes several uncharacterized bacterial proteins. The prototype of this CD is tellurite resistance protein from Nostoc punctiforme that belongs to COG3793. Its precise biological function and its mechanism responsible for tellurium resistance still remains rather poorly understood.
Probab=86.28 E-value=11 Score=38.41 Aligned_cols=98 Identities=18% Similarity=0.272 Sum_probs=70.7
Q ss_pred CCcchHHHHHHHHHHHHh--ccceeeccccccccccccchHHHhhhhhhcccCCChHHHHHHHHhHH-----H-------
Q 002279 707 LPERDRTDLYKTYLLYCL--TGEVTKIPFGASITTKKDDSEYVLLSQLGGILGLTTKEIVDVHRGLA-----E------- 772 (943)
Q Consensus 707 l~~rdr~dLYr~YL~~Cl--sGe~~~~p~G~~i~~~kdqsEf~~LnQLg~ILGL~~kEi~~VH~~la-----e------- 772 (943)
.|..+-..-|--=|++|. .|+++ ..|...+..+-.=+||+..+..++..... .
T Consensus 17 ~~~~~~~~~~~~~Ll~iAkADG~Vs-------------e~Ei~~~~~~m~~~~L~~e~~~~aie~~~~~~L~~~~~~~~~ 83 (150)
T cd07311 17 IPTNQDKLAYLKALLVCAKGDGVIS-------------PEERDWAIGYAAARGGDADMVEELKEYTADEDLEEVDFRSPN 83 (150)
T ss_pred CCCcccHHHHHHHHHHHHHcCCCCC-------------HHHHHHHHHHHHHcCCCHHHHHHHHHhCccccHHHHHHHHHh
Confidence 443334445555677777 89888 88887777776667888876555433210 0
Q ss_pred ------HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 002279 773 ------QAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNI 817 (943)
Q Consensus 773 ------qAyrqqaeqiL~dG~Lt~akae~L~eiq~qLgLp~e~AqKiIK~i 817 (943)
+.-.-++..+++||.+++++-+.|..+++-||+|+..-..+++-.
T Consensus 84 ~~~~~~~ll~~~l~vA~ADG~l~~~E~~lL~~iA~~LGis~~~~~~l~~~~ 134 (150)
T cd07311 84 IKSSRRALLYDAIQVCAADGELSPGEVAAVRKAASLLGISEDEVQKLEEIY 134 (150)
T ss_pred cchhHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 111226688999999999999999999999999999999888763
No 10
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=83.82 E-value=50 Score=36.39 Aligned_cols=160 Identities=14% Similarity=0.182 Sum_probs=99.0
Q ss_pred HHHHhHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCCC---HHHHH
Q 002279 765 DVHRGLAEQAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLN---IKQIR 841 (943)
Q Consensus 765 ~VH~~laeqAyrqqaeqiL~dG~Lt~akae~L~eiq~qLgLp~e~AqKiIK~it~~Kms~~ie~~va~GkL~---~~~V~ 841 (943)
..+.....-+|-=.++++-+||+.|+++++....+-++++|+++.-...+ .++.+|+-+ ..++.
T Consensus 49 ~~q~~ff~a~~aLl~~vAkADG~Vse~Ei~~~~~l~~~~~l~~~~r~~a~-------------~lf~~~k~~~~~l~~~~ 115 (267)
T PRK09430 49 ERQALFFNTTFAVMGHLAKAKGRVTEADIRIASQLMDRMNLHGEARRAAQ-------------QAFREGKEPDFPLREKL 115 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHcCCCHHHHHHHH-------------HHHHHhcccCCCHHHHH
Confidence 44455556677778889999999999999999999999999988733332 244444433 33332
Q ss_pred HHHHcccchhhhccHHHHHHHHHHHHHHHHhcCCCCCchHHHHHhcccccCCCHHHHHHHHHHHHH-HHH----------
Q 002279 842 ELKEASVDLDNMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKARRVVHELAR-NRL---------- 910 (943)
Q Consensus 842 eLke~gV~L~~~ised~R~~LFrK~V~e~issGtg~fD~ee~~~kip~dL~I~~ekAk~Iv~~~a~-~R~---------- 910 (943)
.-..... . -..++.+.+..--+.=++.||.-+-.+++++.+|..-|+|+...-..+....-. .++
T Consensus 116 ~~~~~~~--~--~r~~l~~~lL~~l~~vA~ADG~l~~~E~~~L~~Ia~~Lgis~~df~~~~~~~~~~~~f~~~~~~~~~~ 191 (267)
T PRK09430 116 RQFRSVC--G--GRFDLLRMFLEIQIQAAFADGSLHPNERQVLYVIAEELGFSRFQFDQLLRMMQAGFRFQQQQGGGGYQ 191 (267)
T ss_pred HHHHHHh--c--ccHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcccccccccc
Confidence 2111111 0 112233333355556788999887778899999999999998776666665443 122
Q ss_pred ----HHHHHHHHHHH---hhhchhhHHHHHHhHhhhcc
Q 002279 911 ----SNSLIQAVSLL---RQKNRQGVLCQLSRCLGNCQ 941 (943)
Q Consensus 911 ----~n~LvQAVa~L---RQrk~~~vv~sl~nLLa~~~ 941 (943)
.+.+.+|...| +.-..+++=+.-++|+..||
T Consensus 192 ~~~~~~~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~H 229 (267)
T PRK09430 192 QAQRGPTLEDAYKVLGVSESDDDQEIKRAYRKLMSEHH 229 (267)
T ss_pred cccCCCcHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhC
Confidence 23445555555 33344445555555555444
No 11
>PF04391 DUF533: Protein of unknown function (DUF533); InterPro: IPR007486 Some family members may be secreted or integral membrane proteins.
Probab=83.82 E-value=9 Score=40.42 Aligned_cols=110 Identities=20% Similarity=0.263 Sum_probs=79.8
Q ss_pred HHHHHHHHHHhccCCCCCccchHHHHHHHHHHHhCCCcchhhHHHHHHhhHHHHHHHHhhhcCCcccccCChhHHHHhhh
Q 002279 416 DLKLLYRAYVTDSLSGGRMEESKLAALNQLRNIFGLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLC 495 (943)
Q Consensus 416 DLK~LYraYL~e~Ls~G~l~~~~~~~L~~LknifGLg~~EAe~I~~dV~~kiYR~rL~~~v~sg~le~a~SkA~~LQ~lc 495 (943)
.-..|.|+-+.-+-.+|.++++|...|..-=.-+|++..+-+=+.-+...| -+++ .|.
T Consensus 78 ~a~lllrAMIaAAkADG~ID~~Er~~I~~~l~~~g~d~e~~~~l~~eL~~P------------------~d~~----~la 135 (188)
T PF04391_consen 78 HARLLLRAMIAAAKADGHIDEEERQRIEGALQELGLDAEERAWLQAELAAP------------------LDPD----ALA 135 (188)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHhCC------------------CCHH----HHH
Confidence 556788999999999999999999999887777799865544333333222 2222 233
Q ss_pred hhccCChhhHHHHHHHHHHHHHHHHhhcCCCChHhHHHHHhhHHhhccchHHHHHHHHhh
Q 002279 496 EELHFDPQKASEIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCVPQQTVEAAHSDI 555 (943)
Q Consensus 496 ~~L~Fdpe~A~~iheeIYr~kL~q~Vsd~~Ltdedv~aLlr~R~~LcIp~~~V~~ah~di 555 (943)
..+ =+|+.|.+ +| +-+++.=..-|..+-++|..+..-|+||.+.|+..|+.+
T Consensus 136 ~~v-~~~e~A~e----vY---~aS~laid~d~~~Er~YL~~LA~aL~L~~~lv~~le~~~ 187 (188)
T PF04391_consen 136 AAV-TDPEQAAE----VY---LASLLAIDVDTFAERAYLDELAQALGLDPDLVAQLEQQA 187 (188)
T ss_pred HhC-CCHHHHHH----HH---HHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHc
Confidence 333 46666665 46 444566446799999999999999999999999999764
No 12
>cd07176 terB tellurite resistance protein terB. This family contains uncharacterized bacterial proteins involved in tellurium resistance. The prototype of this CD is the Kp-terB protein from Klebsiella pneumoniae, whose 3D structure was recently determined. The biological function of terB and the mechanism responsible for tellurium resistance are unknown.
Probab=83.66 E-value=13 Score=33.84 Aligned_cols=98 Identities=23% Similarity=0.354 Sum_probs=60.0
Q ss_pred cCCCCCccchHHHHHHHHHH-HhCCCcchhhHHHHHHhhHHHHHHHHhhhcCCcccccCChhHHHHhhhhhccCChhhHH
Q 002279 428 SLSGGRMEESKLAALNQLRN-IFGLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLCEELHFDPQKAS 506 (943)
Q Consensus 428 ~Ls~G~l~~~~~~~L~~Lkn-ifGLg~~EAe~I~~dV~~kiYR~rL~~~v~sg~le~a~SkA~~LQ~lc~~L~Fdpe~A~ 506 (943)
+..+|+++.++...+.++=+ .++++..+.+.+.-. |+...... . .++...+...+-..+. |+
T Consensus 13 a~aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~~~~~-----~~~~~~~~-~------~~~~~~~~~~~~~~~~--~~--- 75 (111)
T cd07176 13 AAADGDIDDAELQAIEALLRSLPVLSGFDRERLIAL-----LDKLLALL-R------PEGLAALLKAAAKLLP--PE--- 75 (111)
T ss_pred HHhccCCCHHHHHHHHHHHHcCccccCCCHHHHHHH-----HHHHHHHH-H------HhhHHHHHHHHHHhCC--HH---
Confidence 44899999999999988876 788886665554322 22222110 0 0111223222222222 33
Q ss_pred HHHHHHHHHHHHHHhhcCCCChHhHHHHHhhHHhhcc
Q 002279 507 EIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCV 543 (943)
Q Consensus 507 ~iheeIYr~kL~q~Vsd~~Ltdedv~aLlr~R~~LcI 543 (943)
-...+|+--.+=..+||.+++.+...|.++...|+|
T Consensus 76 -~r~~~~~~~~~ia~aDG~~~~~E~~~L~~l~~~Lgl 111 (111)
T cd07176 76 -LRETAFAVAVDIAAADGEVDPEERAVLEKLYRALGL 111 (111)
T ss_pred -HHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCc
Confidence 334445444455557999999999999999999986
No 13
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=83.07 E-value=14 Score=33.88 Aligned_cols=92 Identities=26% Similarity=0.402 Sum_probs=61.2
Q ss_pred CCCCccchHHHHHHHH-HHHhCCCcchhhHHHHHHhhHHHHHHHHhhhcCCcccccCChhHHHHhhhhhccCChhhHHHH
Q 002279 430 SGGRMEESKLAALNQL-RNIFGLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLCEELHFDPQKASEI 508 (943)
Q Consensus 430 s~G~l~~~~~~~L~~L-knifGLg~~EAe~I~~dV~~kiYR~rL~~~v~sg~le~a~SkA~~LQ~lc~~L~Fdpe~A~~i 508 (943)
.+|+++.++...+..+ .+.||++..++..++ ..+++.. +...+-..+.+.+-.. |+|+.-..+
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~-----~~~~~~~---------~~~~~~~~~~~~~~~~--~~~~~r~~~ 75 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAELL-----AEAEALE---------EEAPDLYEFTSLIKEH--FDYEERLEL 75 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHH-----HHHHHHH---------HhCCCHHHHHHHHHHh--CCHHHHHHH
Confidence 7999999999999887 667999976665554 2333333 3334555566664443 366665555
Q ss_pred HHHHHHHHHHHHhhcCCCChHhHHHHHhhHHhh
Q 002279 509 HEEIYRQKLQQCVADGELNDEDVAALLRLRVML 541 (943)
Q Consensus 509 heeIYr~kL~q~Vsd~~Ltdedv~aLlr~R~~L 541 (943)
-+.++ +=..+||.++..+...|.++-..|
T Consensus 76 l~~L~----~vA~ADG~~~~~E~~~l~~ia~~L 104 (104)
T cd07313 76 VEALW----EVAYADGELDEYEEHLIRRVADLL 104 (104)
T ss_pred HHHHH----HHHHhcCCCCHHHHHHHHHHHhhC
Confidence 55544 222369999999999998876543
No 14
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=80.87 E-value=71 Score=35.19 Aligned_cols=109 Identities=17% Similarity=0.120 Sum_probs=72.6
Q ss_pred CCCCccchHHHHHHHHHHHhCCCcchhhHHHHHHhhHHHHHHHHhhhcCCcccccCChhHHHHhhhhhccCChhhHHHHH
Q 002279 430 SGGRMEESKLAALNQLRNIFGLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLCEELHFDPQKASEIH 509 (943)
Q Consensus 430 s~G~l~~~~~~~L~~LknifGLg~~EAe~I~~dV~~kiYR~rL~~~v~sg~le~a~SkA~~LQ~lc~~L~Fdpe~A~~ih 509 (943)
.+|+.+.+|+.....+-+-|+|...+-... ..+|+ .|.-.. .+-..+++.+-...+-.|+....+=
T Consensus 68 ADG~Vse~Ei~~~~~l~~~~~l~~~~r~~a-----~~lf~--------~~k~~~-~~l~~~~~~~~~~~~~r~~l~~~lL 133 (267)
T PRK09430 68 AKGRVTEADIRIASQLMDRMNLHGEARRAA-----QQAFR--------EGKEPD-FPLREKLRQFRSVCGGRFDLLRMFL 133 (267)
T ss_pred cCCCcCHHHHHHHHHHHHHcCCCHHHHHHH-----HHHHH--------HhcccC-CCHHHHHHHHHHHhcccHHHHHHHH
Confidence 899999999998888888999985542222 13333 332222 4445566665554455555443332
Q ss_pred HHHHHHHHHHHhhcCCCChHhHHHHHhhHHhhccchHHHHHHHHhhh
Q 002279 510 EEIYRQKLQQCVADGELNDEDVAALLRLRVMLCVPQQTVEAAHSDIC 556 (943)
Q Consensus 510 eeIYr~kL~q~Vsd~~Ltdedv~aLlr~R~~LcIp~~~V~~ah~dic 556 (943)
+..+ +=..+||.|+..+...|.++-..|+|+....+.+....-
T Consensus 134 ~~l~----~vA~ADG~l~~~E~~~L~~Ia~~Lgis~~df~~~~~~~~ 176 (267)
T PRK09430 134 EIQI----QAAFADGSLHPNERQVLYVIAEELGFSRFQFDQLLRMMQ 176 (267)
T ss_pred HHHH----HHHHhcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2222 222369999999999999999999999988887766533
No 15
>cd07177 terB_like tellurium resistance terB-like protein. This family consists of tellurium resistance terB proteins, N-terminal domain of heat shock DnaJ-like proteins, N-terminal domain of Mo-dependent nitrogenase-like proteins, C-terminal domain of ABC transporter ATP-binding proteins, C-terminal domain of serine/threonine protein kinase, and many hypothetical bacterial proteins. The function of this family is unknown.
Probab=78.62 E-value=47 Score=29.42 Aligned_cols=99 Identities=14% Similarity=0.240 Sum_probs=68.4
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHcccchhhhcc
Q 002279 777 QQAEVILADGQLTKARIEQLNEVQKQVGL-PSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDNMIS 855 (943)
Q Consensus 777 qqaeqiL~dG~Lt~akae~L~eiq~qLgL-p~e~AqKiIK~it~~Kms~~ie~~va~GkL~~~~V~eLke~gV~L~~~is 855 (943)
-.+..+.+||+++.+..+.+.++=.+++. ++...+.+..-+....-. ..+...+..+. ...-+
T Consensus 5 ~l~~~a~aDG~i~~~E~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~------~~~~~ 68 (104)
T cd07177 5 LLLAAAKADGRVDEEEIAAIEALLRRLPLLDAEERAELIALLEEPLAE----------AGDLAALAALL------KELPD 68 (104)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHh----------cccHHHHHHHH------HHhCC
Confidence 34455667999999999999988888765 776666666555443321 12333333322 12234
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCchHHHHHhccccc
Q 002279 856 ESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADL 891 (943)
Q Consensus 856 ed~R~~LFrK~V~e~issGtg~fD~ee~~~kip~dL 891 (943)
.++|..+++-.+.=+.++|..+-.+..+++++...|
T Consensus 69 ~~~r~~~l~~~~~ia~aDG~~~~~E~~~l~~l~~~L 104 (104)
T cd07177 69 AELREALLAALWEVALADGELDPEERALLRRLADAL 104 (104)
T ss_pred HHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHhhC
Confidence 589999999999999999998777778888776543
No 16
>PF08429 PLU-1: PLU-1-like protein; InterPro: IPR013637 This domain is found in the central region of lysine-specific demethylases, which are nuclear proteins that may have a role in DNA-binding and transcription, and are associated with malignant cancer phenotypes []. The domain is also found in various other Jumonji/ARID domain-containing proteins (see IPR013129 from INTERPRO, IPR001606 from INTERPRO). ; GO: 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process
Probab=73.62 E-value=1.5e+02 Score=32.81 Aligned_cols=180 Identities=16% Similarity=0.246 Sum_probs=119.0
Q ss_pred cCCChHHHHHHHHhHH-HHHHHHHHHHHhhc-CCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 002279 756 LGLTTKEIVDVHRGLA-EQAFRQQAEVILAD-GQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQG 833 (943)
Q Consensus 756 LGL~~kEi~~VH~~la-eqAyrqqaeqiL~d-G~Lt~akae~L~eiq~qLgLp~e~AqKiIK~it~~Kms~~ie~~va~G 833 (943)
|+..-.||..+..-+- -..|+..++.+|.+ -..+-.+.+.|=+.-+.+|++-.....+.+-+...+-..........+
T Consensus 98 L~~~~pEi~~L~~l~~~ve~f~~~a~~~L~~~~~~~~~~le~Ll~~g~s~~v~lpel~~L~~~l~~~~W~~~~~~~~~~~ 177 (335)
T PF08429_consen 98 LPFDCPEIDQLKELLEEVEEFQSRAQEALSDPESPSLEELEELLEEGESFGVDLPELDQLRRRLEQLEWLEEAREILSDP 177 (335)
T ss_pred CCeeCchHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHhcccCceeChhHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3334445444432221 25699999999998 337777999999999999999999999999999988888778788877
Q ss_pred -CCCHHHHHHHHHcccchhh-----h----ccHHHHHHHHHHHHHHHHhcCCCCCch-HHHHHhcccccCCCHHHHHHHH
Q 002279 834 -KLNIKQIRELKEASVDLDN-----M----ISESLRENLFKKTVDEIFSSGTGEFDA-EEVYEKIPADLSINAEKARRVV 902 (943)
Q Consensus 834 -kL~~~~V~eLke~gV~L~~-----~----ised~R~~LFrK~V~e~issGtg~fD~-ee~~~kip~dL~I~~ekAk~Iv 902 (943)
++|.+++++|.+.|..+.. + -..-..+.-+...+.+.|+.....++. +.++... ..+.+..+....+-
T Consensus 178 ~~~tL~~l~~Ll~~g~~l~~~~~~~~~~~L~~~l~~~~~We~ka~~~L~~~~~~l~~Le~l~~~~-~~ipv~~~~~~~L~ 256 (335)
T PF08429_consen 178 DRLTLDELRELLDEGERLGIPSDEKLMAELQELLKQGEEWEEKAKELLSRPRVSLEQLEALLEEA-ENIPVSLPSLDKLK 256 (335)
T ss_pred cCCcHHHHHHHHHhhhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-hcCCCchHHHHHHH
Confidence 4999999999999999832 1 112233455788888888844443332 3555554 55566666554433
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-hchhhHHHHHHhHhh
Q 002279 903 HELARNRLSNSLIQAVSLLRQ-KNRQGVLCQLSRCLG 938 (943)
Q Consensus 903 ~~~a~~R~~n~LvQAVa~LRQ-rk~~~vv~sl~nLLa 938 (943)
.-+.+. +....|+..+|.| ...--.+.+|.+|++
T Consensus 257 ~~l~ka--k~w~~~i~~ll~~~~~~~p~~~el~~l~~ 291 (335)
T PF08429_consen 257 DALQKA--KEWLRQIEELLEQNGSKRPTLDELEELVA 291 (335)
T ss_pred HHHHHH--HHHHHHHHHHhcccCCCCCcHHHHHHHHH
Confidence 333222 2355666666655 333334566666665
No 17
>PF07216 LcrG: LcrG protein; InterPro: IPR009863 This family consists of several bacterial LcrG proteins. Yersiniae are equipped with the Yop virulon, an apparatus that allows extracellular bacteria to deliver toxic Yop proteins inside the host cell cytosol in order to sabotage the communication networks of the host cell or even to cause cell death. LcrG is a component of the Yop virulon involved in the regulation of secretion of the Yops []. This protein is found in type III secretion operons, along with LcrR, H and V. Also known as PcrG in Pseudomonas, the prot ein is believed to make a 1:1 complex with PcrV (LcrV) []. Mutations in LcrG cause premature secretion of effector proteins into the medium [].
Probab=67.48 E-value=11 Score=35.98 Aligned_cols=45 Identities=22% Similarity=0.317 Sum_probs=37.8
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH
Q 002279 777 QQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAA 824 (943)
Q Consensus 777 qqaeqiL~dG~Lt~akae~L~eiq~qLgLp~e~AqKiIK~it~~Kms~ 824 (943)
+|||.++.| .+.|.+.|+||++.||+.|..++.+..+..++-|..
T Consensus 12 ~~AE~AI~d---sd~R~~llqEm~~gLg~~p~ag~lLf~~~~~~~~k~ 56 (93)
T PF07216_consen 12 EQAELAIRD---SDHRNDLLQEMLEGLGLGPVAGELLFGGSSPELMKQ 56 (93)
T ss_pred HHHHHHHHh---hHHHHHHHHHHHHhcCCChhHHHHHhcCCCHHHHHH
Confidence 678888888 667999999999999999999999999944444433
No 18
>TIGR02573 LcrG_PcrG type III secretion protein LcrG. This protein is found in type III secretion operons, along with LcrR, H and V. Also known as PcrG in Pseudomonas, the protein is believed to make a 1:1 complex with PcrV (LcrV). Mutants of LcrG cause premature secretion of effector proteins into the medium.
Probab=65.73 E-value=15 Score=35.02 Aligned_cols=50 Identities=22% Similarity=0.301 Sum_probs=41.8
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHH
Q 002279 777 QQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETA 829 (943)
Q Consensus 777 qqaeqiL~dG~Lt~akae~L~eiq~qLgLp~e~AqKiIK~it~~Kms~~ie~~ 829 (943)
+|||..++| ++.|...|+||+.-||+.|+.++.+..+...+-|+.+=+..
T Consensus 9 ~~AElAI~d---sd~R~~llqEm~~gLgl~p~ag~~Lf~~~~~e~~~~AEqEL 58 (90)
T TIGR02573 9 QAAELAIRD---SDERNDLLQEMWQGLGLGPVAGEVLFGGLNAELMQHAEQEL 58 (90)
T ss_pred HHHHHHHhc---hHHHHHHHHHHHHHcCCChHHHHHHHcCCCHHHHHHHHHHH
Confidence 678888888 67799999999999999999999999987777676544433
No 19
>cd07177 terB_like tellurium resistance terB-like protein. This family consists of tellurium resistance terB proteins, N-terminal domain of heat shock DnaJ-like proteins, N-terminal domain of Mo-dependent nitrogenase-like proteins, C-terminal domain of ABC transporter ATP-binding proteins, C-terminal domain of serine/threonine protein kinase, and many hypothetical bacterial proteins. The function of this family is unknown.
Probab=62.78 E-value=72 Score=28.28 Aligned_cols=95 Identities=31% Similarity=0.407 Sum_probs=52.8
Q ss_pred ccCCCCCccchHHHHHHHHHHHh-CCCcchhhHHHHHHhhHHHHHHHHhhhcCCcccccCChhHHHHhhhhhccCChhhH
Q 002279 427 DSLSGGRMEESKLAALNQLRNIF-GLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLCEELHFDPQKA 505 (943)
Q Consensus 427 e~Ls~G~l~~~~~~~L~~Lknif-GLg~~EAe~I~~dV~~kiYR~rL~~~v~sg~le~a~SkA~~LQ~lc~~L~Fdpe~A 505 (943)
=+..+|++++++...+.++=.-+ +++..+...+. +......+. ..++. .+..+...+. +|
T Consensus 9 ~a~aDG~i~~~E~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-------------~~~~~-~~~~~~~~~~-~~--- 69 (104)
T cd07177 9 AAKADGRVDEEEIAAIEALLRRLPLLDAEERAELI-ALLEEPLAE-------------AGDLA-ALAALLKELP-DA--- 69 (104)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHhCCCHHHHHHHH-HHHHHHHHh-------------cccHH-HHHHHHHHhC-CH---
Confidence 34469999999999998655554 55544443332 222222221 01111 1122111111 11
Q ss_pred HHHHHHHHHHHHHHHhhcCCCChHhHHHHHhhHHhh
Q 002279 506 SEIHEEIYRQKLQQCVADGELNDEDVAALLRLRVML 541 (943)
Q Consensus 506 ~~iheeIYr~kL~q~Vsd~~Ltdedv~aLlr~R~~L 541 (943)
+-.+.+|+.-..=+-+||.+++.+...|.++...|
T Consensus 70 -~~r~~~l~~~~~ia~aDG~~~~~E~~~l~~l~~~L 104 (104)
T cd07177 70 -ELREALLAALWEVALADGELDPEERALLRRLADAL 104 (104)
T ss_pred -HHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHhhC
Confidence 44555565555555679999999999999887654
No 20
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=61.12 E-value=26 Score=31.69 Aligned_cols=74 Identities=23% Similarity=0.343 Sum_probs=46.8
Q ss_pred hhhhhcccCCChHHHHHHHHhHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHH
Q 002279 749 LSQLGGILGLTTKEIVDVHRGLAEQAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIET 828 (943)
Q Consensus 749 LnQLg~ILGL~~kEi~~VH~~laeqAyrqqaeqiL~dG~Lt~akae~L~eiq~qLgLp~e~AqKiIK~it~~Kms~~ie~ 828 (943)
||++.-+.|.+..++..+- .|+.|++++|+|+.++.-++. ++ +|+ -.+.+-|..-. -...+..
T Consensus 1 ~~~a~~~~G~s~e~~~~~~---------~ql~Q~~~~Gkv~~ee~n~~~---e~--~p~-~~~~lAk~~G~--t~~~l~~ 63 (75)
T TIGR02675 1 INDAGAASGASAEEADGAL---------IQLSQMLASGKLRGEEINSLL---EA--LPG-ALQALAKAMGV--TRGELRK 63 (75)
T ss_pred CchHHHHhCCCHHHHHHHH---------HHHHHHHHcCcccHHHHHHHH---HH--hHH-HHHHHHHHhCC--CHHHHHH
Confidence 4677888999998887765 467899999999988765554 33 442 33333332211 1123344
Q ss_pred HHHcCCCCHHH
Q 002279 829 AVAQGKLNIKQ 839 (943)
Q Consensus 829 ~va~GkL~~~~ 839 (943)
.+.+|+||.++
T Consensus 64 ~~~~Gkit~~~ 74 (75)
T TIGR02675 64 MLSDGKLTADV 74 (75)
T ss_pred HHHCCCCcccc
Confidence 67778777654
No 21
>PHA00666 putative protease
Probab=57.35 E-value=26 Score=38.32 Aligned_cols=62 Identities=23% Similarity=0.343 Sum_probs=43.3
Q ss_pred cCC-CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHcC--CCCH---HHHHHHHHccc
Q 002279 785 DGQ-LTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQG--KLNI---KQIRELKEASV 848 (943)
Q Consensus 785 dG~-Lt~akae~L~eiq~qLgLp~e~AqKiIK~it~~Kms~~ie~~va~G--kL~~---~~V~eLke~gV 848 (943)
.|. |+..-......+|.+||||+|.|||+.. .| .||...|+..-++. ++.. ++++.-+|.|.
T Consensus 93 EG~elD~~~l~~F~~~a~ElgLtqEQAQklvD-~y-~ki~~~~qq~qaeawqk~~e~W~~~~kaD~E~GG 160 (233)
T PHA00666 93 EGVELDTGALGAFEPVARELNLTNEQAQKVVD-LY-TKILPVVQQRQAEAWQKTTEQWAADSKADKEIGG 160 (233)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHH-HH-HHhhHHHHHHHHHHHHHHHHHHHHHhhhchhhcc
Confidence 565 9999999999999999999999999999 45 55555555444332 2221 23455556666
No 22
>PF03735 ENT: ENT domain; InterPro: IPR005491 This entry represents a protein regulator which is able to repress transcription, possibly via its interaction with a multi protein chromatin re-modeling complex that modifies the chromatin. Its interaction with BRCA2 suggests that it may play a central role in the DNA repair function of BRCA2 []. ; PDB: 1UZ3_B 1UTU_B 2FMM_E.
Probab=55.65 E-value=90 Score=28.72 Aligned_cols=50 Identities=22% Similarity=0.223 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCCChHhHHHHHhhHHhhccchHHHHHHHHhh
Q 002279 506 SEIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCVPQQTVEAAHSDI 555 (943)
Q Consensus 506 ~~iheeIYr~kL~q~Vsd~~Ltdedv~aLlr~R~~LcIp~~~V~~ah~di 555 (943)
..++.+=|.-.|.-+-+.|.||.+.-.-|-.+|..|+|+++.=....+-+
T Consensus 6 ~~LE~eAY~svl~Af~Aqg~lsweke~lLt~Lr~~L~IS~e~H~~~l~~~ 55 (73)
T PF03735_consen 6 HRLELEAYSSVLRAFRAQGPLSWEKEKLLTELRKELNISDEEHREELRRA 55 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHSS--HHHHHHHHHHHHHTT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 56777889999999999999999999999999999999987654444433
No 23
>COG2979 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.74 E-value=1.1e+02 Score=33.47 Aligned_cols=111 Identities=17% Similarity=0.186 Sum_probs=82.3
Q ss_pred HHHHHHHHHhccCCCCCccchHHHHHHHHHHHhCCCcchhhHHHHHHhhHHHHHHHHhhhcCCcccccCChhHHHHhhhh
Q 002279 417 LKLLYRAYVTDSLSGGRMEESKLAALNQLRNIFGLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLCE 496 (943)
Q Consensus 417 LK~LYraYL~e~Ls~G~l~~~~~~~L~~LknifGLg~~EAe~I~~dV~~kiYR~rL~~~v~sg~le~a~SkA~~LQ~lc~ 496 (943)
--.|.++-+.-+-++|.+++.|-+.|-+==...|.+..=..=+.-|+..|+==.+|..++..
T Consensus 110 s~~ll~AmIaAAkaDGhIDe~ERa~I~~~l~esG~d~e~~~~le~El~~PlD~~~ia~~a~~------------------ 171 (225)
T COG2979 110 SLTLLRAMIAAAKADGHIDEKERARIMQKLQESGVDPEAQAFLEQELEQPLDPDEIAAAARN------------------ 171 (225)
T ss_pred HHHHHHHHHHHHhhcCCcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCCHHHHHHHhcC------------------
Confidence 45688899999999999999999999877778888855444444555555444444333322
Q ss_pred hccCChhhHHHHHHHHHHHHHHHHhhcCCCChHhHHHHHhhHHhhccchHHHHHHHHhhhh
Q 002279 497 ELHFDPQKASEIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCVPQQTVEAAHSDICG 557 (943)
Q Consensus 497 ~L~Fdpe~A~~iheeIYr~kL~q~Vsd~~Ltdedv~aLlr~R~~LcIp~~~V~~ah~dicg 557 (943)
-+..-||| |-+|+.=-..+--+-.+|..+-.-|+||++.|+...++...
T Consensus 172 ---------ee~a~ElY---~ASrl~id~d~r~Er~YL~~La~~L~L~dalvd~lE~qv~~ 220 (225)
T COG2979 172 ---------EEQALELY---LASRLAIDDDSRMERSYLNALAGALGLPDALVDHLERQVGQ 220 (225)
T ss_pred ---------HHHHHHHH---HHHHHhcCchhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 33445789 77777755677778899999999999999999998877643
No 24
>PRK11280 hypothetical protein; Provisional
Probab=51.92 E-value=14 Score=38.72 Aligned_cols=33 Identities=36% Similarity=0.593 Sum_probs=16.3
Q ss_pred hhhhhccccccCCCC-c-hhHHHHHHHHhhhhhHH
Q 002279 97 VFAGFKLGSKYGGGS-R-NVAIGGAAILGAAGGAM 129 (943)
Q Consensus 97 ~a~G~~~G~~~~~~~-r-~aa~~gaav~gaa~~a~ 129 (943)
+.+|.++|..+|+|+ | .|+++||++.|.+|...
T Consensus 72 av~Gg~~G~~iGgG~Gr~~at~~Ga~~G~~~G~~i 106 (170)
T PRK11280 72 AVAGGVLGHQFGGGRGKDVATVAGALGGGYAGNQI 106 (170)
T ss_pred HHHHHHhhhhccCCCccHHHHHHHHHHHHHHHHHH
Confidence 344556777775442 2 44444444444444433
No 25
>PF10025 DUF2267: Uncharacterized conserved protein (DUF2267); InterPro: IPR018727 This entry contains proteins that have no known function. ; PDB: 2YSK_A.
Probab=51.54 E-value=94 Score=30.18 Aligned_cols=90 Identities=26% Similarity=0.379 Sum_probs=58.3
Q ss_pred HHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHcccchhhhccHHHHHHHHHHHHHHHH
Q 002279 793 IEQLNEVQKQVGL-PSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDNMISESLRENLFKKTVDEIF 871 (943)
Q Consensus 793 ae~L~eiq~qLgL-p~e~AqKiIK~it~~Kms~~ie~~va~GkL~~~~V~eLke~gV~L~~~ised~R~~LFrK~V~e~i 871 (943)
-+||++++++.|+ +.+.|..+.+.. + ..-..+|+.++...|- +-++..+|+-++. .-..
T Consensus 3 ~~fl~~V~~~~~l~~~~~A~~a~~av----L------~~L~~rL~~~ea~~La-------~qLP~~l~~~l~~---gw~~ 62 (125)
T PF10025_consen 3 DEFLDEVRERAGLPDREEAYRATRAV----L------HTLRERLPPEEAADLA-------AQLPMELRGILYE---GWRP 62 (125)
T ss_dssp HHHHHHHHHHHT---HHHHHHHHHHH----H------HHHHTTS-HHHHHHHH-------TTS-HHHHHHHHT---T--T
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHH----H------HHHHHHCCHHHHHHHH-------HhCCHHHHHHHHh---cccC
Confidence 3799999999999 667777665543 3 2235689999988765 4468888888876 3345
Q ss_pred hcCCCCCchHHHHHhcccccCCCHH-HHHHHH
Q 002279 872 SSGTGEFDAEEVYEKIPADLSINAE-KARRVV 902 (943)
Q Consensus 872 ssGtg~fD~ee~~~kip~dL~I~~e-kAk~Iv 902 (943)
..+.+.|+.++++..+...++.+.+ .|...+
T Consensus 63 ~~~~~~~~~~eF~~rVa~~~~~~~~~~a~~~~ 94 (125)
T PF10025_consen 63 SEGPGRFDLDEFLARVAERLGGADEDDAERLA 94 (125)
T ss_dssp TS-----SHHHHHHHHHHTSEETTEE-HHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHccCCCcccHHHHH
Confidence 6667779999999999998888776 665543
No 26
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.99 E-value=1.9e+02 Score=30.15 Aligned_cols=111 Identities=20% Similarity=0.243 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH-HhCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHccc
Q 002279 770 LAEQAFRQQAEVILADGQLTKARIEQLNEVQK-QVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASV 848 (943)
Q Consensus 770 laeqAyrqqaeqiL~dG~Lt~akae~L~eiq~-qLgLp~e~AqKiIK~it~~Kms~~ie~~va~GkL~~~~V~eLke~gV 848 (943)
||.-+ =...++.+||.-.++..+.+.+|++ -+|++.+....+|+-...--... -.|-.+--
T Consensus 29 lAa~~--Llf~Vm~ADG~v~~~E~~a~r~il~~~f~i~~~~l~ali~~~e~~~~Ea----------------~d~y~fts 90 (148)
T COG4103 29 LAAAA--LLFHVMEADGTVSESEREAFRAILKENFGIDGEELDALIEAGEEAGYEA----------------IDLYSFTS 90 (148)
T ss_pred HHHHH--HHHHHHhcccCcCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhHHH----------------HHHHHHHH
Confidence 44444 4567899999999987777776655 58999999999988665433322 11122222
Q ss_pred chhhhccHHHHHHHHHHHHHHHHhcCCCCCchHHHHHhcccccCCCHHHH
Q 002279 849 DLDNMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKA 898 (943)
Q Consensus 849 ~L~~~ised~R~~LFrK~V~e~issGtg~fD~ee~~~kip~dL~I~~ekA 898 (943)
+|-..+++++|-.|-+---+=+..+|+-+=-+..++.++..=|+|..+--
T Consensus 91 ~l~r~Ld~e~R~eli~~mweIa~ADg~l~e~Ed~vi~RvAeLLgV~~~d~ 140 (148)
T COG4103 91 VLKRHLDEEQRLELIGLMWEIAYADGELDESEDHVIWRVAELLGVSPEDR 140 (148)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHhCCCHHHH
Confidence 33445677888888887778888999987777799999999999998753
No 27
>KOG2534 consensus DNA polymerase IV (family X) [Replication, recombination and repair]
Probab=48.80 E-value=55 Score=37.64 Aligned_cols=99 Identities=23% Similarity=0.349 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHhhhccccccchhHHHHHHHHHHHhhHHHHhhccCCC-------cccccCCCcceeeeccccCCCCcch
Q 002279 343 LVEENIVTALSILKSRTRVVKGVAQVVEELDKVLAFNNLLISLRQHPN-------ADRFARGVGPVSLVGGEFDGDRKMD 415 (943)
Q Consensus 343 ~ve~~is~al~~lk~rt~~~~~~~~~v~el~~vLa~n~~L~~l~~~~d-------~~~f~~G~gpvsl~Gg~~d~d~k~d 415 (943)
..-+++..|+++|+.-- ++-.+....++|-+...+|++.|- +.. +||+||=+.
T Consensus 10 ~~N~~~~~aleiLa~~~-------ev~g~~~r~~~y~~Aasvlk~~p~~I~S~~ea~~-lP~iG~kia------------ 69 (353)
T KOG2534|consen 10 NNNQIFTEALEILAEAY-------EVEGEEDRARAYRRAASVLKSLPFPITSGEEAEK-LPGIGPKIA------------ 69 (353)
T ss_pred cccHHHHHHHHHHHHhh-------cccccHHHHHHHHHHHHHHHhCCCCcccHHHhcC-CCCCCHHHH------------
Confidence 34567889999997654 455688899999999999999553 233 677776443
Q ss_pred HHHHHHHHHHhccCCCC--C-ccchHHHHHHHHHHHhCCCcchhhHHHHHHhhHHHHHHH
Q 002279 416 DLKLLYRAYVTDSLSGG--R-MEESKLAALNQLRNIFGLGKRESEAIIVDVTSKVYRKRL 472 (943)
Q Consensus 416 DLK~LYraYL~e~Ls~G--~-l~~~~~~~L~~LknifGLg~~EAe~I~~dV~~kiYR~rL 472 (943)
.+..-+|+.....+ + ..|+-...|.-|.||||.|.+-| .+-||+-+
T Consensus 70 ---~ki~EiletG~l~ele~v~~de~~~~lklFtnifGvG~ktA--------~~Wy~~Gf 118 (353)
T KOG2534|consen 70 ---EKIQEILETGVLRELEAVRNDERSQSLKLFTNIFGVGLKTA--------EKWYREGF 118 (353)
T ss_pred ---HHHHHHHHcCCchhHHHHhcchhHHHHHHHHHHhccCHHHH--------HHHHHhhh
Confidence 23333444444332 2 33466678999999999995544 67788776
No 28
>smart00501 BRIGHT BRIGHT, ARID (A/T-rich interaction domain) domain. DNA-binding domain containing a helix-turn-helix structure
Probab=48.57 E-value=10 Score=34.76 Aligned_cols=50 Identities=20% Similarity=0.343 Sum_probs=40.8
Q ss_pred HhhhhhcCCCCCCCCCH-HHHHHHHHhhcccchhhhhhHHHHHHHHHHhhc
Q 002279 144 RLHDYVTDCNDPGAVKR-EDIEAIASKYGVSKQDEAFNAELSEIYCRFVTS 193 (943)
Q Consensus 144 ~LhN~~~~~~Dp~~l~~-e~v~ai~~kyGvs~~~~~~~~el~~lY~~~~~s 193 (943)
.||+.|..++-...++. .....|+.++|+..+......+|+.+|.+||..
T Consensus 36 ~Ly~~V~~~GG~~~v~~~~~W~~Va~~lg~~~~~~~~~~~lk~~Y~k~L~~ 86 (93)
T smart00501 36 RLYRLVQERGGYDQVTKDKKWKEIARELGIPDTSTSAASSLRKHYERYLLP 86 (93)
T ss_pred HHHHHHHHccCHHHHcCCCCHHHHHHHhCCCcccchHHHHHHHHHHHHhHH
Confidence 47788888877777764 668999999999987666677999999999853
No 29
>PF13488 Gly-zipper_Omp: Glycine zipper
Probab=48.14 E-value=24 Score=29.66 Aligned_cols=38 Identities=34% Similarity=0.419 Sum_probs=25.3
Q ss_pred hhhhhccccccCCCCchhHHHHHHHHhhhhhHHHHHhhh
Q 002279 97 VFAGFKLGSKYGGGSRNVAIGGAAILGAAGGAMAYAMNA 135 (943)
Q Consensus 97 ~a~G~~~G~~~~~~~r~aa~~gaav~gaa~~a~a~~~ns 135 (943)
+++|.++|... +++...++.||++.+++|++.-+..++
T Consensus 7 A~~Ga~iG~~~-g~~~~ga~iGa~vGa~~G~~ig~~~d~ 44 (46)
T PF13488_consen 7 AAAGAAIGAAT-GGPGKGAAIGAAVGAAVGAAIGNYMDK 44 (46)
T ss_pred HHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHHHHHhc
Confidence 34566677776 455567777777777777776666554
No 30
>COG3793 TerB Tellurite resistance protein [Inorganic ion transport and metabolism]
Probab=46.96 E-value=43 Score=34.41 Aligned_cols=78 Identities=22% Similarity=0.319 Sum_probs=56.0
Q ss_pred CCcchHHHHHHHHHHHHhccceeeccccccccccccchHHHhhhhhhcccCCChHHHHHHHHhH--HHHHHHHHHHHHhh
Q 002279 707 LPERDRTDLYKTYLLYCLTGEVTKIPFGASITTKKDDSEYVLLSQLGGILGLTTKEIVDVHRGL--AEQAFRQQAEVILA 784 (943)
Q Consensus 707 l~~rdr~dLYr~YL~~ClsGe~~~~p~G~~i~~~kdqsEf~~LnQLg~ILGL~~kEi~~VH~~l--aeqAyrqqaeqiL~ 784 (943)
++..++..+|.+|.+ |+.=++ ++..-. -.++|+.+..+- |+-+-+--.-+.-+
T Consensus 62 f~~~~i~~~~~~~~~-~~~~d~----------------~~gk~e--------a~~~I~~lk~d~e~Ae~vL~vAv~VA~a 116 (144)
T COG3793 62 FDSNEINEIFETLVG-SFDTDF----------------EIGKRE--------AMKEIEDLKHDTEAAEDVLRVAVAVAEA 116 (144)
T ss_pred ccHHHHHHHHHHHHH-Hhhhhh----------------hhhHHH--------HHHHHHHhcCChHHHHHHHHHHHHHhhc
Confidence 445577888888888 773311 111111 134566665554 78888877888889
Q ss_pred cCCCCHHHHHHHHHHHHHhCCChHH
Q 002279 785 DGQLTKARIEQLNEVQKQVGLPSEY 809 (943)
Q Consensus 785 dG~Lt~akae~L~eiq~qLgLp~e~ 809 (943)
||-.++++-+.|.+||..|||+|..
T Consensus 117 DG~~d~~E~avl~eI~~aLGL~p~~ 141 (144)
T COG3793 117 DGEFEAEERAVLREIAGALGLSPAE 141 (144)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCHHh
Confidence 9999999999999999999999864
No 31
>PRK10510 putative outer membrane lipoprotein; Provisional
Probab=45.71 E-value=15 Score=39.17 Aligned_cols=40 Identities=30% Similarity=0.312 Sum_probs=23.5
Q ss_pred hhhccccccCCCCchhHHHHHHHHhhhhhHHHHHhhhccchh
Q 002279 99 AGFKLGSKYGGGSRNVAIGGAAILGAAGGAMAYAMNAAVPEV 140 (943)
Q Consensus 99 ~G~~~G~~~~~~~r~aa~~gaav~gaa~~a~a~~~ns~~p~v 140 (943)
+|+.+|... +....++.||++.|++|++..|.++....+.
T Consensus 49 ~G~~~g~~~--~~~~~a~~ga~~G~~~G~~~g~~~d~q~~~l 88 (219)
T PRK10510 49 IGALSSSKK--DRGKGALIGAAAGAALGGGVGYYMDVQEAKL 88 (219)
T ss_pred HHhhhcCCC--cccchhhhHhHHHhhhhhhhhhhhhhHHHHH
Confidence 344455332 1224566677777777777777776655443
No 32
>COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription]
Probab=43.99 E-value=4.4e+02 Score=29.78 Aligned_cols=107 Identities=21% Similarity=0.304 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHhCCCh---HHHHHHHHHHHHH----------HHHHHHHHHHHcCC--CCHHHHHHHHHcccchhhhccH
Q 002279 792 RIEQLNEVQKQVGLPS---EYAQKIIKNITTT----------KMAAAIETAVAQGK--LNIKQIRELKEASVDLDNMISE 856 (943)
Q Consensus 792 kae~L~eiq~qLgLp~---e~AqKiIK~it~~----------Kms~~ie~~va~Gk--L~~~~V~eLke~gV~L~~~ise 856 (943)
-.+.|..++..||||. |.|..|.+..... .+++.+-.+-.+.. .|.++|.++.+ ++.
T Consensus 100 a~~~l~~~~~~l~LP~~v~e~A~~iyr~a~~~~l~rGRsie~v~AA~iY~acR~~~~prtl~eIa~a~~--------V~~ 171 (285)
T COG1405 100 ALEELERIASALGLPESVRETAARIYRKAVDKGLLRGRSIESVAAACIYAACRINGVPRTLDEIAKALG--------VSK 171 (285)
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHhhcCCCcCCcHHHHHHHHHHHHHHHcCCCccHHHHHHHHC--------CCH
Confidence 5678999999999996 6677887766553 34454544444444 67888888776 233
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCchHHHHHhcccccCCCHHHHHHHHHHHHHH
Q 002279 857 SLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKARRVVHELARN 908 (943)
Q Consensus 857 d~R~~LFrK~V~e~issGtg~fD~ee~~~kip~dL~I~~ekAk~Iv~~~a~~ 908 (943)
..=++.|++.+.+.. -....-|..+.+.++..+|+|+.++ .+...++++.
T Consensus 172 kei~rtyr~~~~~L~-l~~~~~~p~~yi~rf~s~L~l~~~v-~~~a~ei~~~ 221 (285)
T COG1405 172 KEIGRTYRLLVRELK-LKIPPVDPSDYIPRFASKLGLSDEV-RRKAIEIVKK 221 (285)
T ss_pred HHHHHHHHHHHHhcC-CCCCCCCHHHHHHHHHHHcCCCHHH-HHHHHHHHHH
Confidence 444667775555544 3366689999999999999999554 4444444443
No 33
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=42.78 E-value=83 Score=28.49 Aligned_cols=71 Identities=20% Similarity=0.253 Sum_probs=52.7
Q ss_pred HHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHcccchhhhccHHHHHHHHHHHHHHHHhcCCCC
Q 002279 798 EVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDNMISESLRENLFKKTVDEIFSSGTGE 877 (943)
Q Consensus 798 eiq~qLgLp~e~AqKiIK~it~~Kms~~ie~~va~GkL~~~~V~eLke~gV~L~~~ised~R~~LFrK~V~e~issGtg~ 877 (943)
+.-...|.+.|.++-++.. + ...++.|+++.++.+-|.|.+..+-..+.+. .......+.+.+++|..+
T Consensus 3 ~a~~~~G~s~e~~~~~~~q-----l----~Q~~~~Gkv~~ee~n~~~e~~p~~~~~lAk~--~G~t~~~l~~~~~~Gkit 71 (75)
T TIGR02675 3 DAGAASGASAEEADGALIQ-----L----SQMLASGKLRGEEINSLLEALPGALQALAKA--MGVTRGELRKMLSDGKLT 71 (75)
T ss_pred hHHHHhCCCHHHHHHHHHH-----H----HHHHHcCcccHHHHHHHHHHhHHHHHHHHHH--hCCCHHHHHHHHHCCCCc
Confidence 4445678888887776543 3 3378899999999999999888776666554 356677788888888876
Q ss_pred Cc
Q 002279 878 FD 879 (943)
Q Consensus 878 fD 879 (943)
.|
T Consensus 72 ~~ 73 (75)
T TIGR02675 72 AD 73 (75)
T ss_pred cc
Confidence 55
No 34
>PF05818 TraT: Enterobacterial TraT complement resistance protein; InterPro: IPR008874 The traT gene is one of the F factor transfer genes and encodes an outer membrane protein which is involved in interactions between Escherichia coli and its surroundings []. The protein plays a role in preventing unproductive conjugation between bacteria carrying like plasmids.; GO: 0046999 regulation of conjugation, 0019867 outer membrane
Probab=42.45 E-value=22 Score=38.49 Aligned_cols=28 Identities=29% Similarity=0.370 Sum_probs=13.8
Q ss_pred hhhhccccccCCCCchhHHHHHHHHhhhh
Q 002279 98 FAGFKLGSKYGGGSRNVAIGGAAILGAAG 126 (943)
Q Consensus 98 a~G~~~G~~~~~~~r~aa~~gaav~gaa~ 126 (943)
++|+++|... +++..+++|.+++.|++|
T Consensus 95 ~~G~~~g~~~-~~~~g~~~G~GlaGalig 122 (215)
T PF05818_consen 95 ATGAAIGAYN-SGSAGAAIGAGLAGALIG 122 (215)
T ss_pred HHhhhhcccc-CCccchhhhhhHHHhHHH
Confidence 3667777433 455555555333333333
No 35
>PF03280 Lipase_chap: Proteobacterial lipase chaperone protein; InterPro: IPR004961 The proteobacterial lipase chaperone is a lipase helper protein which may be involved in the folding of extracellular lipase during its passage through the periplasm [].; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016020 membrane; PDB: 2ES4_E.
Probab=41.00 E-value=2.7e+02 Score=29.25 Aligned_cols=94 Identities=20% Similarity=0.306 Sum_probs=57.8
Q ss_pred HHHHHHHHH---HHHhhcCCCCHH-HHHHHHHHHHHhCCChHHHHHHHHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHH
Q 002279 771 AEQAFRQQA---EVILADGQLTKA-RIEQLNEVQKQVGLPSEYAQKIIKNITT-TKMAAAIETAVAQGKLNIKQIRELKE 845 (943)
Q Consensus 771 aeqAyrqqa---eqiL~dG~Lt~a-kae~L~eiq~qLgLp~e~AqKiIK~it~-~Kms~~ie~~va~GkL~~~~V~eLke 845 (943)
.|.+|+++. -.|..+..|+.+ |...|..+..+| |+ +-++-+++... .++...+...-.+| .+.+++..++.
T Consensus 57 ~E~~~~~~~l~rl~I~~d~~Ls~~ek~~~l~~l~~~l--P~-~~~~~~~~~~~~~~l~~~~~~l~~~g-~~~~~~~~~r~ 132 (195)
T PF03280_consen 57 EENAYDQYALARLAIAQDASLSDEEKQQRLAELLQQL--PE-DLQEARRNAQLLQDLQQQTQELQAQG-ASEQELRAARA 132 (195)
T ss_dssp HHHHHHHHHHHHHHHHT-TT--HHHHHHHHHHHCCCS---H-HHHHHHHHHHHHHHHHHHHHHHHHTT---HHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhC--CH-HHHHHHHhHHHHHHHHHHHHHHHHcC-CCHHHHHHHHH
Confidence 366777765 347777789998 999999988875 54 44444555444 66666566566666 89999999998
Q ss_pred cccch---hhhccHHHHHHHHHHHHH
Q 002279 846 ASVDL---DNMISESLRENLFKKTVD 868 (943)
Q Consensus 846 ~gV~L---~~~ised~R~~LFrK~V~ 868 (943)
..|.- +.+...|..+.-|+.-|+
T Consensus 133 ~~vg~eaA~RL~~ld~~~~~w~~r~~ 158 (195)
T PF03280_consen 133 QLVGPEAAQRLAQLDQQRAQWQQRLD 158 (195)
T ss_dssp CCC-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88876 344555555555554443
No 36
>PRK11235 bifunctional antitoxin/transcriptional repressor RelB; Provisional
Probab=40.38 E-value=57 Score=30.46 Aligned_cols=52 Identities=35% Similarity=0.441 Sum_probs=42.5
Q ss_pred HHHhhhhhccCChhhHHHHHHHHHHHHHHHHhhcCC-------CChHhHHHHHhhHHhhccchHHH
Q 002279 490 FLQSLCEELHFDPQKASEIHEEIYRQKLQQCVADGE-------LNDEDVAALLRLRVMLCVPQQTV 548 (943)
Q Consensus 490 ~LQ~lc~~L~Fdpe~A~~iheeIYr~kL~q~Vsd~~-------Ltdedv~aLlr~R~~LcIp~~~V 548 (943)
--+.+|++++.++..| .+..+.|++..+. +|++|.+.|.-.|..+.-|...+
T Consensus 15 ~A~~vl~~lGls~S~A-------i~~fl~qi~~~~~iPF~~~~~s~ed~~~l~~~re~~~~~~~~~ 73 (80)
T PRK11235 15 RAYAVLEKLGVTPSEA-------LRLLLQYVAENGRLPFKTVLLSDEDAALLETVRERLANPQKGI 73 (80)
T ss_pred HHHHHHHHhCCCHHHH-------HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCe
Confidence 3467999999999988 5677888998554 78999999999898888877554
No 37
>PF04391 DUF533: Protein of unknown function (DUF533); InterPro: IPR007486 Some family members may be secreted or integral membrane proteins.
Probab=39.91 E-value=1.8e+02 Score=31.02 Aligned_cols=72 Identities=18% Similarity=0.203 Sum_probs=48.3
Q ss_pred chHHHhhhhhhcccCCChHHHHHHHHh------------------HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhC
Q 002279 743 DSEYVLLSQLGGILGLTTKEIVDVHRG------------------LAEQAFRQQAEVILADGQLTKARIEQLNEVQKQVG 804 (943)
Q Consensus 743 qsEf~~LnQLg~ILGL~~kEi~~VH~~------------------laeqAyrqqaeqiL~dG~Lt~akae~L~eiq~qLg 804 (943)
+.|-.++-+-=.-+|++..+-..|+.. .+.++|..= -+.-| ..+..+.+||.+|-.+|+
T Consensus 98 ~~Er~~I~~~l~~~g~d~e~~~~l~~eL~~P~d~~~la~~v~~~e~A~evY~aS--~laid-~d~~~Er~YL~~LA~aL~ 174 (188)
T PF04391_consen 98 EEERQRIEGALQELGLDAEERAWLQAELAAPLDPDALAAAVTDPEQAAEVYLAS--LLAID-VDTFAERAYLDELAQALG 174 (188)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCCCHHHHHHhCCCHHHHHHHHHHH--HHHhC-CCCHHHHHHHHHHHHHhC
Confidence 555544444333346666555555543 456666533 23333 568899999999999999
Q ss_pred CChHHHHHHHHHH
Q 002279 805 LPSEYAQKIIKNI 817 (943)
Q Consensus 805 Lp~e~AqKiIK~i 817 (943)
||++..+.|++.+
T Consensus 175 L~~~lv~~le~~~ 187 (188)
T PF04391_consen 175 LDPDLVAQLEQQA 187 (188)
T ss_pred cCHHHHHHHHHHc
Confidence 9999999998764
No 38
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=38.76 E-value=1.1e+02 Score=31.79 Aligned_cols=135 Identities=21% Similarity=0.314 Sum_probs=75.2
Q ss_pred CCCCCcchHHHHHHHHHHHHh--ccceeeccccccccccccchHHHhhhhhhccc---C--CChHHHHHHHHhHHHHHHH
Q 002279 704 KDDLPERDRTDLYKTYLLYCL--TGEVTKIPFGASITTKKDDSEYVLLSQLGGIL---G--LTTKEIVDVHRGLAEQAFR 776 (943)
Q Consensus 704 kdDl~~rdr~dLYr~YL~~Cl--sGe~~~~p~G~~i~~~kdqsEf~~LnQLg~IL---G--L~~kEi~~VH~~laeqAyr 776 (943)
-.-++.++++++|+.|.++|. +|-+. -+.|+.|| | .+..||..+...+-.
T Consensus 11 ~~~~t~~qi~~lkeaF~l~D~d~~G~I~-------------------~~el~~ilr~lg~~~s~~ei~~l~~~~d~---- 67 (160)
T COG5126 11 FTQLTEEQIQELKEAFQLFDRDSDGLID-------------------RNELGKILRSLGFNPSEAEINKLFEEIDA---- 67 (160)
T ss_pred cccCCHHHHHHHHHHHHHhCcCCCCCCc-------------------HHHHHHHHHHcCCCCcHHHHHHHHHhccC----
Confidence 356899999999999999999 66333 34555554 3 334444444333221
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHH--HHcCCCCHHHHHHHHHcccchhhhc
Q 002279 777 QQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETA--VAQGKLNIKQIRELKEASVDLDNMI 854 (943)
Q Consensus 777 qqaeqiL~dG~Lt~akae~L~eiq~qLgLp~e~AqKiIK~it~~Kms~~ie~~--va~GkL~~~~V~eLke~gV~L~~~i 854 (943)
+.|.++- .+||.=|-..++ +..+.+++.-+-+-. =.+|+++..+.+.... .+
T Consensus 68 -------~~~~idf--~~Fl~~ms~~~~----------~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~-------~l 121 (160)
T COG5126 68 -------GNETVDF--PEFLTVMSVKLK----------RGDKEEELREAFKLFDKDHDGYISIGELRRVLK-------SL 121 (160)
T ss_pred -------CCCccCH--HHHHHHHHHHhc----------cCCcHHHHHHHHHHhCCCCCceecHHHHHHHHH-------hh
Confidence 1133433 345554444442 222233333211110 1478899888877665 23
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCCCchHHHHHhc
Q 002279 855 SESLRENLFKKTVDEIFSSGTGEFDAEEVYEKI 887 (943)
Q Consensus 855 sed~R~~LFrK~V~e~issGtg~fD~ee~~~ki 887 (943)
.+++...-..+.+...=.+|-|..+.+++++.+
T Consensus 122 ge~~~deev~~ll~~~d~d~dG~i~~~eF~~~~ 154 (160)
T COG5126 122 GERLSDEEVEKLLKEYDEDGDGEIDYEEFKKLI 154 (160)
T ss_pred cccCCHHHHHHHHHhcCCCCCceEeHHHHHHHH
Confidence 333333444445555556788888888887754
No 39
>TIGR01446 DnaD_dom DnaD and phage-associated domain. This model represents the conserved domain of DnaD, part of Bacillus subtilis replication restart primosome, and of a number of phage-associated proteins. Members, both chromosomal or phage-associated, are found in the Bacillus/Clostridium group of Gram-positive bacteria.
Probab=38.11 E-value=2.1e+02 Score=24.95 Aligned_cols=53 Identities=25% Similarity=0.266 Sum_probs=35.6
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 002279 779 AEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELK 844 (943)
Q Consensus 779 aeqiL~dG~Lt~akae~L~eiq~qLgLp~e~AqKiIK~it~~Kms~~ie~~va~GkL~~~~V~eLk 844 (943)
.++.++. .||+-.++.|..+.+..|+|++--- .+++.++..|+.|..=|....
T Consensus 5 ~e~~~gr-~ls~~e~~~i~~~~~~~~~~~evI~------------~ai~~a~~~~~~~~~Yi~~Il 57 (73)
T TIGR01446 5 FEENFGR-MLSPFEMEDLKYWLDEFGNSPELIK------------EALKEAVSNNKANYKYIDAIL 57 (73)
T ss_pred HHHHhCC-CCCHHHHHHHHHHHHHhCCCHHHHH------------HHHHHHHHcCCCCHHHHHHHH
Confidence 3444332 7999999999999999999976322 244445556777665554443
No 40
>PF05818 TraT: Enterobacterial TraT complement resistance protein; InterPro: IPR008874 The traT gene is one of the F factor transfer genes and encodes an outer membrane protein which is involved in interactions between Escherichia coli and its surroundings []. The protein plays a role in preventing unproductive conjugation between bacteria carrying like plasmids.; GO: 0046999 regulation of conjugation, 0019867 outer membrane
Probab=37.67 E-value=20 Score=38.86 Aligned_cols=45 Identities=29% Similarity=0.409 Sum_probs=26.0
Q ss_pred HhhhhhhccccccCCCCchhHHHHHHHHhhhhhHHHHHhhhccchh
Q 002279 95 GAVFAGFKLGSKYGGGSRNVAIGGAAILGAAGGAMAYAMNAAVPEV 140 (943)
Q Consensus 95 ~a~a~G~~~G~~~~~~~r~aa~~gaav~gaa~~a~a~~~ns~~p~v 140 (943)
+++++|.++|... |+.....-|+++++|++||+...++++.+..+
T Consensus 88 gga~~Ga~~G~~~-g~~~~~~~g~~~G~GlaGalig~~ada~v~D~ 132 (215)
T PF05818_consen 88 GGALAGAATGAAI-GAYNSGSAGAAIGAGLAGALIGMIADAMVEDV 132 (215)
T ss_pred hhHHHHhHHhhhh-ccccCCccchhhhhhHHHhHHHHHHhhhcccc
Confidence 3445555566655 33333333444555888888888877665554
No 41
>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans. ARID-encoding genes are involved in a variety of biological processes including embryonic development, cell lineage gene regulation and cell cycle control. Although the specific roles of this domain and of ARID-containing proteins in transcriptional regulation are yet to be elucidated, they include both positive and negative transcriptional regulation and a likely involvement in the modification of chromatin structure []. The basic structure of the ARID domain domain appears to be a series of six alpha-helices separated by beta-strands, loops, or turns, but the structured region may extend to an additional helix at either or both ends of the basic six. Based on primary sequence homology, they can be partitioned into three structural classes: Minimal ARID proteins that consist of a core domain formed by six alpha helices; ARID proteins that supplement the core domain with an N-terminal alpha-helix; and Extended-ARID proteins, which contain the core domain and additional alpha-helices at their N- and C-termini. The human SWI-SNF complex protein p270 is an ARID family member with non-sequence-specific DNA binding activity. The ARID consensus and other structural features are common to both p270 and yeast SWI1, suggesting that p270 is a human counterpart of SWI1 []. The approximately 100-residue ARID sequence is present in a series of proteins strongly implicated in the regulation of cell growth, development, and tissue-specific gene expression. Although about a dozen ARID proteins can be identified from database searches, to date, only Bright (a regulator of B-cell-specific gene expression), dead ringer (a Drosophila melanogaster gene product required for normal development), and MRF-2 (which represses expression from the Cytomegalovirus enhancer) have been analyzed directly in regard to their DNA binding properties. Each binds preferentially to AT-rich sites. In contrast, p270 shows no sequence preference in its DNA binding activity, thereby demonstrating that AT-rich binding is not an intrinsic property of ARID domains and that ARID family proteins may be involved in a wider range of DNA interactions [].; GO: 0003677 DNA binding, 0005622 intracellular; PDB: 1C20_A 1KQQ_A 2JRZ_A 2LM1_A 2YQE_A 2JXJ_A 2EH9_A 2CXY_A 2LI6_A 1KN5_A ....
Probab=37.48 E-value=11 Score=34.11 Aligned_cols=49 Identities=16% Similarity=0.264 Sum_probs=37.8
Q ss_pred HhhhhhcCCCCCCCCCHHH-HHHHHHhhcccchhhhhhHHHHHHHHHHhh
Q 002279 144 RLHDYVTDCNDPGAVKRED-IEAIASKYGVSKQDEAFNAELSEIYCRFVT 192 (943)
Q Consensus 144 ~LhN~~~~~~Dp~~l~~e~-v~ai~~kyGvs~~~~~~~~el~~lY~~~~~ 192 (943)
.||+.|..++-+..|+.+. -..|+.++|+......-..+|+.+|.+||.
T Consensus 40 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~~L~~~Y~~~L~ 89 (92)
T PF01388_consen 40 KLYKAVMKRGGFDKVTKNKKWREVARKLGFPPSSTSAAQQLRQHYEKYLL 89 (92)
T ss_dssp HHHHHHHHHTSHHHHHHHTTHHHHHHHTTS-TTSCHHHHHHHHHHHHHTH
T ss_pred HHHHHHHhCcCcccCcccchHHHHHHHhCCCCCCCcHHHHHHHHHHHHhH
Confidence 5788888887777777664 899999999987643335689999999985
No 42
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=36.43 E-value=3.6e+02 Score=28.64 Aligned_cols=131 Identities=26% Similarity=0.361 Sum_probs=86.0
Q ss_pred HHhhhhhhcccC----CChHHHHHHHHhHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHH--
Q 002279 746 YVLLSQLGGILG----LTTKEIVDVHRGLAEQAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITT-- 819 (943)
Q Consensus 746 f~~LnQLg~ILG----L~~kEi~~VH~~laeqAyrqqaeqiL~dG~Lt~akae~L~eiq~qLgLp~e~AqKiIK~it~-- 819 (943)
+.++.++..--| ++..||..+|. .|++..... .+|.+|+++-..+-++ ..+ -.++-||+-+-+
T Consensus 11 ~~~~~~~~~~~~~~~~fs~~EI~~L~~-----rF~kl~~~~-~~g~lt~eef~~i~~~----~~N-p~~~rI~~~f~~~~ 79 (187)
T KOG0034|consen 11 DEDLEELQMYTGDPTQFSANEIERLYE-----RFKKLDRNN-GDGYLTKEEFLSIPEL----ALN-PLADRIIDRFDTDG 79 (187)
T ss_pred hhhhHHHHhccCCCcccCHHHHHHHHH-----HHHHhcccc-ccCccCHHHHHHHHHH----hcC-cHHHHHHHHHhccC
Confidence 344455555556 78899999985 688888777 9999999877766633 222 245556655542
Q ss_pred ------------------------HHHHH--HHHHHHHcCCCCHHHHHHHHHcccch-hhhccHHHHHHHHHHHHHHHHh
Q 002279 820 ------------------------TKMAA--AIETAVAQGKLNIKQIRELKEASVDL-DNMISESLRENLFKKTVDEIFS 872 (943)
Q Consensus 820 ------------------------~Kms~--~ie~~va~GkL~~~~V~eLke~gV~L-~~~ised~R~~LFrK~V~e~is 872 (943)
+||-= -+=..=-+|.+|-+++..+.+.=|.. +++ +.++|+.+=.+++.++=.
T Consensus 80 ~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~-~~e~~~~i~d~t~~e~D~ 158 (187)
T KOG0034|consen 80 NGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDM-SDEQLEDIVDKTFEEADT 158 (187)
T ss_pred CCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcc-hHHHHHHHHHHHHHHhCC
Confidence 24422 11112247899999999888654443 333 899999999999988876
Q ss_pred cCCCCCchH---HHHHhcc
Q 002279 873 SGTGEFDAE---EVYEKIP 888 (943)
Q Consensus 873 sGtg~fD~e---e~~~kip 888 (943)
+|-|--+.+ .++++-|
T Consensus 159 d~DG~IsfeEf~~~v~~~P 177 (187)
T KOG0034|consen 159 DGDGKISFEEFCKVVEKQP 177 (187)
T ss_pred CCCCcCcHHHHHHHHHcCc
Confidence 655554555 5555554
No 43
>cd07178 terB_like_YebE tellurium resistance terB-like protein, subgroup 3. This family includes several uncharacterized bacterial proteins including an Escherichia coli protein called YebE. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=36.17 E-value=3.8e+02 Score=25.30 Aligned_cols=94 Identities=20% Similarity=0.174 Sum_probs=63.4
Q ss_pred HHHHHHhccCCCCCccchHHHHHHHHHHHhCCCcchhhHHHHHHhhHHHHHHHHhhhcCCcccccCChhHHHHhhhhhcc
Q 002279 420 LYRAYVTDSLSGGRMEESKLAALNQLRNIFGLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLCEELH 499 (943)
Q Consensus 420 LYraYL~e~Ls~G~l~~~~~~~L~~LknifGLg~~EAe~I~~dV~~kiYR~rL~~~v~sg~le~a~SkA~~LQ~lc~~L~ 499 (943)
|-++-+.=+-++|+++.++...|.++-.-+|++. -.+..+...+ ...-++. .|+..++
T Consensus 2 ~lrami~aAkADG~id~~E~~~I~~~~~~~~~~~---------~~~~~~~~~l---------~~p~~~~----~la~~~~ 59 (95)
T cd07178 2 LLRAMIAAAKADGHIDEAERARILGELGEAGLDA---------EERAFLEAEL---------AAPLDPD----ALAAAVP 59 (95)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCH---------HHHHHHHHHH---------HCCCCHH----HHHHHcC
Confidence 4566677777999999999999999999999983 2244444444 2222222 4555555
Q ss_pred CChhhHHHHHHHHHHHHHHHHhhcCCCChHhHHHHHhhHHhhcc
Q 002279 500 FDPQKASEIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCV 543 (943)
Q Consensus 500 Fdpe~A~~iheeIYr~kL~q~Vsd~~Ltdedv~aLlr~R~~LcI 543 (943)
=+ +.+.++ |+ -+++.-+.+|..+-++|..|..-|++
T Consensus 60 ~~-~~a~~~----y~---~s~~~~d~~s~aE~~~L~~la~aLgl 95 (95)
T cd07178 60 DP-ELAAEV----YA---ASLLAIDPDTFAERAYLDELAAALGL 95 (95)
T ss_pred CH-HHHHHH----HH---HHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 44 555555 73 33343239999999999999988875
No 44
>COG3413 Predicted DNA binding protein [General function prediction only]
Probab=35.77 E-value=69 Score=33.60 Aligned_cols=51 Identities=18% Similarity=0.310 Sum_probs=44.8
Q ss_pred HHHHHHHhcCCCCCChHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 002279 562 KVVKDAISSGVEGYDGEVKKAVRKAAHGLRLTREAAMSIASKAVRRIFVIYIK 614 (943)
Q Consensus 562 k~Vk~Ai~aG~dg~~~~~~~~vrkA~~~LRLsde~A~eI~~kavRk~f~~yI~ 614 (943)
++++.|+..|.--+.. +..++..++.+=+|.-+..+.++++.+|.+.+|+.
T Consensus 162 ~vL~~A~~~GYFd~PR--~~~l~dLA~~lGISkst~~ehLRrAe~Kl~~~~~~ 212 (215)
T COG3413 162 EVLRLAYKMGYFDYPR--RVSLKDLAKELGISKSTLSEHLRRAERKLIEAYFD 212 (215)
T ss_pred HHHHHHHHcCCCCCCc--cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 4577889998774444 89999999999999999999999999999999875
No 45
>PRK13731 conjugal transfer surface exclusion protein TraT; Provisional
Probab=34.64 E-value=23 Score=38.96 Aligned_cols=7 Identities=29% Similarity=0.714 Sum_probs=3.4
Q ss_pred CCCCCCC
Q 002279 20 PFLNPSP 26 (943)
Q Consensus 20 ~~~~~~~ 26 (943)
-||.|.+
T Consensus 43 IfLdP~~ 49 (243)
T PRK13731 43 IWLEPAS 49 (243)
T ss_pred EEEcCCC
Confidence 3555533
No 46
>cd07178 terB_like_YebE tellurium resistance terB-like protein, subgroup 3. This family includes several uncharacterized bacterial proteins including an Escherichia coli protein called YebE. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=34.56 E-value=2.6e+02 Score=26.35 Aligned_cols=92 Identities=16% Similarity=0.268 Sum_probs=60.4
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHcccchhhhcc
Q 002279 776 RQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDNMIS 855 (943)
Q Consensus 776 rqqaeqiL~dG~Lt~akae~L~eiq~qLgLp~e~AqKiIK~it~~Kms~~ie~~va~GkL~~~~V~eLke~gV~L~~~is 855 (943)
|....-.-+||..+++..+.+..+=+.+|++.+.- .+++.. +.. .++++++..- .=+
T Consensus 4 rami~aAkADG~id~~E~~~I~~~~~~~~~~~~~~-~~~~~~------------l~~-p~~~~~la~~---------~~~ 60 (95)
T cd07178 4 RAMIAAAKADGHIDEAERARILGELGEAGLDAEER-AFLEAE------------LAA-PLDPDALAAA---------VPD 60 (95)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCHHHH-HHHHHH------------HHC-CCCHHHHHHH---------cCC
Confidence 44556677999999999999999999999996433 332222 222 2233322111 223
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCchHHHHHhcccccCC
Q 002279 856 ESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSI 893 (943)
Q Consensus 856 ed~R~~LFrK~V~e~issGtg~fD~ee~~~kip~dL~I 893 (943)
..++.++|.-.+-=+ |..++-+.++++.+...|+|
T Consensus 61 ~~~a~~~y~~s~~~~---d~~s~aE~~~L~~la~aLgl 95 (95)
T cd07178 61 PELAAEVYAASLLAI---DPDTFAERAYLDELAAALGL 95 (95)
T ss_pred HHHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHhCc
Confidence 377777887666544 46666677999999888875
No 47
>KOG4675 consensus Uncharacterized conserved protein, contains ENT domain [General function prediction only]
Probab=34.20 E-value=2.9e+02 Score=31.29 Aligned_cols=77 Identities=14% Similarity=0.218 Sum_probs=58.9
Q ss_pred HhHHHHHHHHHHHHHhhcCC-CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 002279 768 RGLAEQAFRQQAEVILADGQ-LTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELK 844 (943)
Q Consensus 768 ~~laeqAyrqqaeqiL~dG~-Lt~akae~L~eiq~qLgLp~e~AqKiIK~it~~Kms~~ie~~va~GkL~~~~V~eLk 844 (943)
.-|=.-||+.-+...-+.|. ++.++.+-|.||+++|..+.|.=+..++.+-..-|..-|-.=...+-.+.+.+.+.+
T Consensus 13 ~~le~eaY~~vl~af~aq~d~iS~ek~~~~teLrk~l~Is~eeh~~~~r~~~~d~~~~~i~~n~~~~n~~qe~~~e~~ 90 (273)
T KOG4675|consen 13 HRLELEAYASVLRAFKAQGDAISWEKEELLTELRKELNISDEEHRMLVRRAINDDLITRIRENSRGSNKSQEWSGEGR 90 (273)
T ss_pred HHHHHHHHHHHHHHHHhcCcccchhHHHHHHHHhhhhccCHHHHHHHHHHHhccHHHHHHHHhhcCCCchhhhhhhhh
Confidence 34566799999999999999 999999999999999999999999999988776665533322233344444554444
No 48
>PF13436 Gly-zipper_OmpA: Glycine-zipper containing OmpA-like membrane domain
Probab=34.11 E-value=47 Score=32.54 Aligned_cols=21 Identities=48% Similarity=0.779 Sum_probs=11.6
Q ss_pred hhhccccccCCCCchhHHHHH
Q 002279 99 AGFKLGSKYGGGSRNVAIGGA 119 (943)
Q Consensus 99 ~G~~~G~~~~~~~r~aa~~ga 119 (943)
+|.++|...|++.+.+++|++
T Consensus 62 ~GA~~Ga~~G~~~~ga~~GAa 82 (118)
T PF13436_consen 62 AGAAIGAIIGGNGRGAAIGAA 82 (118)
T ss_pred HHHHHHhhcCCCccchHHHHH
Confidence 566677777443455554443
No 49
>PRK04019 rplP0 acidic ribosomal protein P0; Validated
Probab=33.81 E-value=1.5e+02 Score=33.64 Aligned_cols=42 Identities=21% Similarity=0.218 Sum_probs=29.0
Q ss_pred hhcCCcccccCChhHHHHhhhhhccCChhhHHHHHHHHHHHHHHHHhhcCC-CChH
Q 002279 475 AVSGGALEAADSKASFLQSLCEELHFDPQKASEIHEEIYRQKLQQCVADGE-LNDE 529 (943)
Q Consensus 475 ~v~sg~le~a~SkA~~LQ~lc~~L~Fdpe~A~~iheeIYr~kL~q~Vsd~~-Ltde 529 (943)
.++.|+- -.++.+.+||. ..|+-..|+-++..+..+|. ++-+
T Consensus 157 v~~~G~~-v~~~~a~lL~~------------LgI~p~~~~~~i~a~~~~G~~~~~~ 199 (330)
T PRK04019 157 VAKAGEV-ISPELANVLQK------------LGIKPIEVGLDLKAAYEDGVIYTPE 199 (330)
T ss_pred EecCCCC-cCHHHHHHHHH------------cCCCHHHhhhHHHHHHhcCCccCHH
Confidence 4566666 44666777777 55556679999988888774 5544
No 50
>PF10785 NADH-u_ox-rdase: NADH-ubiquinone oxidoreductase complex I, 21 kDa subunit; InterPro: IPR019721 This domain is found in the N-terminal region of NADH-ubiquinone oxidoreductase 21kDa subunits from plants and fungi [].
Probab=31.12 E-value=92 Score=29.22 Aligned_cols=63 Identities=19% Similarity=0.147 Sum_probs=42.3
Q ss_pred hhhhhhcCCchhhhHHHHHHHHHhhhhhhccccccCCCCc---hhHHHHHHHHhhhhhHHHHHhhhc
Q 002279 73 IQPVVDKLSPPVRLATSAVVIAGAVFAGFKLGSKYGGGSR---NVAIGGAAILGAAGGAMAYAMNAA 136 (943)
Q Consensus 73 ~~~~~~~l~~~~r~~~~~~vva~a~a~G~~~G~~~~~~~r---~aa~~gaav~gaa~~a~a~~~ns~ 136 (943)
....+... -|.=|+..+++.|+...+||..|...+.... ..+...+..+|..||+..+-.||+
T Consensus 13 f~rVv~~~-R~sDy~~~a~~ta~~p~~~~~~~~~~~~~~~~~~~~~~~~a~~ig~~gGfl~ayqrS~ 78 (86)
T PF10785_consen 13 FKRVVRYF-RPSDYAIWAGATAASPPLGYYMERSAPSRVGRGGGPAMRLAGAIGFFGGFLLAYQRSS 78 (86)
T ss_pred HHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHhh
Confidence 44455555 5566788888888888999998887642222 445555666677777777766764
No 51
>PF12949 HeH: HeH/LEM domain; PDB: 2OUT_A.
Probab=30.51 E-value=44 Score=26.87 Aligned_cols=34 Identities=21% Similarity=0.363 Sum_probs=23.9
Q ss_pred CCCCCHHHHHHHHHhhcccchhhhhhHHHHHHHH
Q 002279 155 PGAVKREDIEAIASKYGVSKQDEAFNAELSEIYC 188 (943)
Q Consensus 155 p~~l~~e~v~ai~~kyGvs~~~~~~~~el~~lY~ 188 (943)
|.+||=.++-.|...+||.....+=++||.+|+.
T Consensus 1 p~sltV~~Lk~iL~~~~I~~ps~AkKaeLv~L~~ 34 (35)
T PF12949_consen 1 PKSLTVAQLKRILDEHGIEFPSNAKKAELVALFN 34 (35)
T ss_dssp STT--SHHHHHHHHHHT---SSS--SHHHHHH--
T ss_pred CCcCcHHHHHHHHHHcCCCCCCCCCHHHHHHHHc
Confidence 7899999999999999999999999999999874
No 52
>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution
Probab=30.41 E-value=80 Score=29.76 Aligned_cols=46 Identities=17% Similarity=0.371 Sum_probs=39.1
Q ss_pred HhhhhhcCCCCCCCCCHHHHHHHHHhhcccchhhhhhHHHHHHHHHHhhccc
Q 002279 144 RLHDYVTDCNDPGAVKREDIEAIASKYGVSKQDEAFNAELSEIYCRFVTSVL 195 (943)
Q Consensus 144 ~LhN~~~~~~Dp~~l~~e~v~ai~~kyGvs~~~~~~~~el~~lY~~~~~svi 195 (943)
.|+++..| +|+.-|.-|+.+-|+..-....-.|+++....|++.|+
T Consensus 6 ~~~~~~~g------i~k~~I~RLarr~GvkRIS~d~y~e~~~~l~~~l~~I~ 51 (85)
T cd00076 6 VLRDNIKG------ITKPAIRRLARRGGVKRISGGVYDEVRNVLKSYLEDVI 51 (85)
T ss_pred HHHHhhcc------CCHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 34555555 78999999999999999987777799999999999876
No 53
>PRK13731 conjugal transfer surface exclusion protein TraT; Provisional
Probab=30.41 E-value=47 Score=36.71 Aligned_cols=9 Identities=33% Similarity=0.656 Sum_probs=3.8
Q ss_pred ccCCChhhh
Q 002279 68 KELQGIQPV 76 (943)
Q Consensus 68 k~l~g~~~~ 76 (943)
+++.++|+.
T Consensus 63 ~~~~~l~~~ 71 (243)
T PRK13731 63 KDMSGLQGK 71 (243)
T ss_pred cchHHHHHH
Confidence 344444443
No 54
>KOG3324 consensus Mitochondrial import inner membrane translocase, subunit TIM23 [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.61 E-value=45 Score=35.97 Aligned_cols=37 Identities=32% Similarity=0.244 Sum_probs=26.9
Q ss_pred hhhhhhcccccc--CCCCchhHHHHHHHHhhhhhHHHHH
Q 002279 96 AVFAGFKLGSKY--GGGSRNVAIGGAAILGAAGGAMAYA 132 (943)
Q Consensus 96 a~a~G~~~G~~~--~~~~r~aa~~gaav~gaa~~a~a~~ 132 (943)
.++||..-|.-+ .+|-|.++++++.+++||++++.+-
T Consensus 158 sv~AGalTGalyrs~~Glr~~av~ga~g~~aa~aw~l~k 196 (206)
T KOG3324|consen 158 SVAAGALTGALYRSTRGLRAAAVAGAVGGTAAAAWTLGK 196 (206)
T ss_pred hhhhhhhhhhhhhcCCCchHHHHHHHHHHHHHHHHHHhh
Confidence 345555555544 6788999999999998888877654
No 55
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=29.31 E-value=93 Score=36.23 Aligned_cols=35 Identities=34% Similarity=0.526 Sum_probs=15.9
Q ss_pred CCCcccCCCCCCCCCCCCCCCCCCCCcccccccccccccCcc
Q 002279 3 NSSLLTTPTSNRPLLFSPFLNPSPLPKRRRFKVSFPRNRSAA 44 (943)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 44 (943)
|+....++++++..+ ||+.|-| |-|....||.+..
T Consensus 4 ~~~~~~~~~~~~~~~--~~~~~~~-----~~~~~~~~~~~~~ 38 (370)
T PLN03094 4 SSSMISSLPSSSNGL--PFLPPKP-----QTRLLLVRAMSNA 38 (370)
T ss_pred cccccccCCCCCCCC--CCCCCch-----HHHHHHHHHhccc
Confidence 344444444444433 6664433 3333444565433
No 56
>PF14620 YPEB: YpeB sporulation
Probab=29.06 E-value=9.6e+02 Score=27.91 Aligned_cols=136 Identities=17% Similarity=0.283 Sum_probs=81.8
Q ss_pred ccCCChHHHHHHHHhHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 002279 755 ILGLTTKEIVDVHRGLAEQAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGK 834 (943)
Q Consensus 755 ILGL~~kEi~~VH~~laeqAyrqqaeqiL~dG~Lt~akae~L~eiq~qLgLp~e~AqKiIK~it~~Kms~~ie~~va~Gk 834 (943)
+=.+.-..++..-+.+++-+|+ .+...+....||+++.+.|.+|.++. ..|=++ ...++.-|.+|.
T Consensus 80 l~~~~~~~t~~FLsqvGdfsy~-la~~~~~g~~Lt~~e~~tL~~L~~~s-------~~l~~~------L~~~~~~v~~~~ 145 (361)
T PF14620_consen 80 LSQMPFNKTEKFLSQVGDFSYS-LAVRDLDGEPLTDEEYKTLKELYEQS-------GELNKE------LQDVQNKVLSGN 145 (361)
T ss_pred CCCcchhHHHHHHHHHHHHHHH-HHHhhcCCCCCCHHHHHHHHHHHHHH-------HHHHHH------HHHHHHHHHhCC
Confidence 3334445556666677777764 56666666679999999999998764 333222 235566889999
Q ss_pred CCHHHHHHHHHcccchhhhccHHHHHHHHHHHHHHHHhc-C----CCCCchHHHHHhccccc---CCCHHHHHHHHHHHH
Q 002279 835 LNIKQIRELKEASVDLDNMISESLRENLFKKTVDEIFSS-G----TGEFDAEEVYEKIPADL---SINAEKARRVVHELA 906 (943)
Q Consensus 835 L~~~~V~eLke~gV~L~~~ised~R~~LFrK~V~e~iss-G----tg~fD~ee~~~kip~dL---~I~~ekAk~Iv~~~a 906 (943)
|.-.+|+.=... .....-..-+.++ | +.|++-+.. . .|.| .+.+-++-|..| .|+.+.|+.|+.+..
T Consensus 146 l~w~d~~~~~~~--~~~~~~~~~i~~~-f-~~v~~~~~~yp~l~ydGpf-sd~~~~~~p~~l~g~~Is~eeA~~iak~fl 220 (361)
T PF14620_consen 146 LRWMDVEKALAS--ELQPQDNTIIDGG-F-KTVEKQVQGYPELIYDGPF-SDHLEKRTPKGLSGKEISKEEAKQIAKKFL 220 (361)
T ss_pred CchHHHHHhhhh--ccccCCCcccccH-H-HHHHHhhccCCCcccCCcc-hhhhhhcccccCCCCCcCHHHHHHHHHHHh
Confidence 998886533221 2211111111111 1 344444422 1 2555 456667777655 599999999998877
Q ss_pred HHH
Q 002279 907 RNR 909 (943)
Q Consensus 907 ~~R 909 (943)
...
T Consensus 221 ~~~ 223 (361)
T PF14620_consen 221 GKP 223 (361)
T ss_pred CCC
Confidence 654
No 57
>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed
Probab=28.76 E-value=27 Score=39.49 Aligned_cols=41 Identities=20% Similarity=0.386 Sum_probs=36.2
Q ss_pred CCCHHHHHHHHHhhcccchhhhhhHHHHHH----HHHHhhcccCC
Q 002279 157 AVKREDIEAIASKYGVSKQDEAFNAELSEI----YCRFVTSVLPP 197 (943)
Q Consensus 157 ~l~~e~v~ai~~kyGvs~~~~~~~~el~~l----Y~~~~~sviP~ 197 (943)
.++|+||..+|..+|+...++.++.++|=+ |..||...+|+
T Consensus 165 ~~~K~eVr~~A~~~gl~~~~k~~s~~icf~~~~~~~~fl~~~~~~ 209 (346)
T PRK00143 165 ELTKPEVREIAEEAGLPVAKKKDSQGICFIGERDYRDFLKRYLPA 209 (346)
T ss_pred cCCHHHHHHHHHHcCCCcCCCCCCCcccCCCchhHHHHHHHhccc
Confidence 389999999999999999888888888854 88899998874
No 58
>PRK01294 lipase chaperone; Provisional
Probab=27.63 E-value=94 Score=35.56 Aligned_cols=57 Identities=14% Similarity=0.269 Sum_probs=27.8
Q ss_pred hhccchhhhhHhhhhhcCCCCCCCCCHHHHHHHHHhhcccchhhhhhHHHHHHHHHHhh
Q 002279 134 NAAVPEVAAKRLHDYVTDCNDPGAVKREDIEAIASKYGVSKQDEAFNAELSEIYCRFVT 192 (943)
Q Consensus 134 ns~~p~vA~~~LhN~~~~~~Dp~~l~~e~v~ai~~kyGvs~~~~~~~~el~~lY~~~~~ 192 (943)
+.-+.+.+...+++|...- -...+.++|.+--..|=-..-++.-.+++-++|.+|+.
T Consensus 80 g~li~~~~~Rd~FDYfLs~--~gE~~l~~i~~~v~~~i~~~l~~~a~~~a~~l~~rY~~ 136 (336)
T PRK01294 80 GHLADTRALRDFFDYFLSA--LGELDLAAIDALVEREIAAQLPEPADSQALDLWLRYKA 136 (336)
T ss_pred CCeeccHHHHHHHHHHhhc--cCCCCHHHHHHHHHHHHHhhCCchHHHHHHHHHHHHHH
Confidence 3344555666666665542 12234444444444432222223334566667777754
No 59
>COG2511 GatE Archaeal Glu-tRNAGln amidotransferase subunit E (contains GAD domain) [Translation, ribosomal structure and biogenesis]
Probab=27.27 E-value=8.8e+02 Score=30.28 Aligned_cols=113 Identities=20% Similarity=0.342 Sum_probs=62.7
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCCCH--------HHHHHHHHcccchhhhccHHHH--------H
Q 002279 797 NEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNI--------KQIRELKEASVDLDNMISESLR--------E 860 (943)
Q Consensus 797 ~eiq~qLgLp~e~AqKiIK~it~~Kms~~ie~~va~GkL~~--------~~V~eLke~gV~L~~~ised~R--------~ 860 (943)
..+.+.+||+.+-|.++++.-+-+..-. .++. .+.+ .=+.+|++-||++++.=....+ +
T Consensus 461 ~r~~~eygLs~~LA~~~~~~~~~~~FEe----l~e~-~v~p~~~A~~L~~~~~~L~reg~~i~~l~~~~i~~~~~~~~~g 535 (631)
T COG2511 461 ERYVKEYGLSKELAEQLASDPRVDLFEE----LVEK-GVDPTLIASTLVNTLPELRREGVEIDNLDDEHIEELLRLVSEG 535 (631)
T ss_pred HHHHHHhCCCHHHHHHHHhhhhHHHHHH----HHHc-CCCHHHHHHHHHHHHHHHHhcCCccccCCHHHHHHHHHHHhcc
Confidence 4456677777777777776655544433 3332 2222 2356777888888555333332 2
Q ss_pred HHHHHHHHHHHhcCC--CCCchHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHH
Q 002279 861 NLFKKTVDEIFSSGT--GEFDAEEVYEKIPADLSINAEKARRVVHELARNRLSNSLI 915 (943)
Q Consensus 861 ~LFrK~V~e~issGt--g~fD~ee~~~kip~dL~I~~ekAk~Iv~~~a~~R~~n~Lv 915 (943)
++=|..|++++..=. .+-|.+++.+++-- ..++.|...+|+.+++++-....--
T Consensus 536 ~iake~iee~l~~l~~~p~~~~~e~~~~~gL-~~ls~eEve~iI~eii~~~~d~i~~ 591 (631)
T COG2511 536 KIAKEAIEEILKALAENPGKDAAEIAEKLGL-KELSEEEVEKIIDEIIESNLDVIKE 591 (631)
T ss_pred cchHHHHHHHHHHHHhCCCCCHHHHHHHhcc-ccCCHHHHHHHHHHHHHhhHHHHHH
Confidence 333444454443211 33455566655421 2468899999999988665544333
No 60
>KOG3811 consensus Transcription factor AP-2 [Transcription]
Probab=27.26 E-value=1.6e+02 Score=35.05 Aligned_cols=80 Identities=29% Similarity=0.427 Sum_probs=48.4
Q ss_pred HHHHhhHHHHHHHHhhhcCCCCChHH-----------HHHHHHHHhhccC---------ChHHHHHHHHHHHHHHHHHHH
Q 002279 289 IAIRDNAKRLYASKLKSVGRDVDAEH-----------IVRLREEQLSYRL---------SDALAEDLFREHTRKLVEENI 348 (943)
Q Consensus 289 ~a~rdnA~~l~~~~l~s~g~~l~~~~-----------l~~lr~~q~~~~L---------sDe~a~e~fr~~a~k~ve~~i 348 (943)
-|.-.|+-++.+.+|+.+|-.|.+++ |+|--..-++--| .+++|++|.|+|.- -+.+.
T Consensus 250 RaKsKnGGr~lRe~L~k~GlnlpagrRkaAnVT~ltsLVE~EAvHLArDf~~vcE~efP~~~Iae~l~r~~l~--~~~~~ 327 (434)
T KOG3811|consen 250 RAKSKNGGRLLREKLTKIGLNLPAGRRKAANVTLLTSLVEEEAVHLARDFGYVCETEFPARAIAEELLRKHLA--PENDL 327 (434)
T ss_pred hhhhcchHHHHHHHHHHcCCCCcccchhhccchhhhHHHHHHHHHHHHhhhhhhhhhccHHHHHHHHHHHhhc--CchhH
Confidence 35667999999999999999999886 3433333332211 23344443333321 01244
Q ss_pred HHHHHHhhhccccccchhHHHHHHHHHHH
Q 002279 349 VTALSILKSRTRVVKGVAQVVEELDKVLA 377 (943)
Q Consensus 349 s~al~~lk~rt~~~~~~~~~v~el~~vLa 377 (943)
-....++|.-+ ++|+|+.++|.
T Consensus 328 ~~rk~ml~~t~-------q~~ke~~~lLs 349 (434)
T KOG3811|consen 328 DDRKNMLLATT-------QICKELTDLLS 349 (434)
T ss_pred HHHHHHHHHHH-------HHHHHHHHHHh
Confidence 45555555544 99999999884
No 61
>PRK13676 hypothetical protein; Provisional
Probab=26.95 E-value=5.7e+02 Score=24.49 Aligned_cols=88 Identities=11% Similarity=0.142 Sum_probs=58.7
Q ss_pred chHHHhhhhhhcccCCChHHHHHHHHhHHHHHHHHHHHHHhhcCC-CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Q 002279 743 DSEYVLLSQLGGILGLTTKEIVDVHRGLAEQAFRQQAEVILADGQ-LTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTK 821 (943)
Q Consensus 743 qsEf~~LnQLg~ILGL~~kEi~~VH~~laeqAyrqqaeqiL~dG~-Lt~akae~L~eiq~qLgLp~e~AqKiIK~it~~K 821 (943)
..||.++..-...+ ....|....-.+. +.-+.+++.....|+ .+++....|+++..++..+|.-..=+-....-.+
T Consensus 19 s~ey~~~~~A~~~l-~~d~~a~~li~~F--~~~q~~~~~~q~~g~~~~~e~~~~l~~l~~~i~~n~~i~~y~~Ae~~l~~ 95 (114)
T PRK13676 19 LPEYKALKEAKEAV-KADEEAKKLFDEF--RALQLEIQQKQMTGQEITEEEQQKAQELGQKIQQNELLSKLMEAEQRLSV 95 (114)
T ss_pred CHHHHHHHHHHHHH-HcCHHHHHHHHHH--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 45566665554444 2333444444444 223344455556666 8899999999999999999988777777777778
Q ss_pred HHHHHHHHHHcC
Q 002279 822 MAAAIETAVAQG 833 (943)
Q Consensus 822 ms~~ie~~va~G 833 (943)
|.+-|...|+.+
T Consensus 96 ll~~v~~iI~~~ 107 (114)
T PRK13676 96 YINDINKIIFKP 107 (114)
T ss_pred HHHHHHHHHHHH
Confidence 877777777665
No 62
>PRK06253 O-phosphoseryl-tRNA synthetase; Reviewed
Probab=26.73 E-value=1.1e+02 Score=37.37 Aligned_cols=95 Identities=23% Similarity=0.300 Sum_probs=58.9
Q ss_pred CCHHHHHHHHH-cccchhhhccHHHHHHHHHHHHHHHHhcCCCCCchHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHH
Q 002279 835 LNIKQIRELKE-ASVDLDNMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKARRVVHELARNRLSNS 913 (943)
Q Consensus 835 L~~~~V~eLke-~gV~L~~~ised~R~~LFrK~V~e~issGtg~fD~ee~~~kip~dL~I~~ekAk~Iv~~~a~~R~~n~ 913 (943)
|+.++|..+.+ +|.++++.--+.+|+-| +..-.|+ .|-++++-+|...|+++...+-+|+.++-=+=++=-
T Consensus 107 ~~~~~~~~i~~~~~~~~~~~~~e~l~~~l------h~ykkg~--~~gddl~~e~~~~l~~~~~~~~~~l~~vfpe~k~l~ 178 (529)
T PRK06253 107 ISDEKIEQIEEILGRDLSEEKIESLREVL------HSYKKGE--IDGDDLVLEISKALEVSDEMVLKILDEVFPEFKELK 178 (529)
T ss_pred cCHHHHHHHHHHhCCCCChhHHHHHHHHH------HHhhcCC--CccchhHHHHHHhcCCChHHHHHHHHHhChHhhhcC
Confidence 56666667776 77777655555555544 4445554 589999999999999999999999986643322211
Q ss_pred HHHHHHHHhhhchhhHHHHHHhHh
Q 002279 914 LIQAVSLLRQKNRQGVLCQLSRCL 937 (943)
Q Consensus 914 LvQAVa~LRQrk~~~vv~sl~nLL 937 (943)
=+-.-+.||.--..+.+.++...+
T Consensus 179 p~~~~svLRtSLlPGLL~tLs~Nl 202 (529)
T PRK06253 179 PESSRLTLRSHMTSGWFITLSSLL 202 (529)
T ss_pred CccccCccccchHHHHHHHHHHHH
Confidence 112223344444444444444333
No 63
>PF01923 Cob_adeno_trans: Cobalamin adenosyltransferase; InterPro: IPR002779 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents EutT- and PduO-type ATP:cob(I)alamin adenosyltransferases. PduO functions to convert cobalamin to AdoCbl for 1,2-propanediol degradation [], while EutT produces AdoCbl for ethanolamine utilisation []. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 2ZHY_A 2ZHZ_B 3KE5_C 3KE4_B 2AH6_C 1NOG_A 2IDX_C 3GAH_A 3CI1_A 3CI3_A ....
Probab=26.14 E-value=5.3e+02 Score=26.39 Aligned_cols=110 Identities=16% Similarity=0.232 Sum_probs=66.4
Q ss_pred HHHHHHHhCCChHHH-----HHHHHHHHHHHHHHHHHHHHHcCC------CCHHHHHHHHHcccchhhhccHHHHHHHHH
Q 002279 796 LNEVQKQVGLPSEYA-----QKIIKNITTTKMAAAIETAVAQGK------LNIKQIRELKEASVDLDNMISESLRENLFK 864 (943)
Q Consensus 796 L~eiq~qLgLp~e~A-----qKiIK~it~~Kms~~ie~~va~Gk------L~~~~V~eLke~gV~L~~~ised~R~~LFr 864 (943)
|.|++..+|+=...+ .+.++.|... .-.+-+.++.+. ++.++|.+| +
T Consensus 32 lDEl~a~igla~~~~~~~~~~~~L~~iq~~--L~~l~~~la~~~~~~~~~i~~~~v~~L--------------------e 89 (163)
T PF01923_consen 32 LDELNAFIGLARSEIKEEELREILERIQNE--LFDLGAELATPEEDEEPEITEEDVQEL--------------------E 89 (163)
T ss_dssp HHHHHHHHHHHHTHCTTHHHHHHHHHHHHH--HHHHHHHHHTTTTSSSCS--HHHHHHH--------------------H
T ss_pred HHHHHHHHHHHHHHcCchhHHHHHHHHHHH--HHHHHHHHcCCCcccccccCHHHHHHH--------------------H
Confidence 456666666655554 3344444433 336667788754 677777776 2
Q ss_pred HHHHHHHhcCCCCCchHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHhHhh
Q 002279 865 KTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKARRVVHELARNRLSNSLIQAVSLLRQKNRQGVLCQLSRCLG 938 (943)
Q Consensus 865 K~V~e~issGtg~fD~ee~~~kip~dL~I~~ekAk~Iv~~~a~~R~~n~LvQAVa~LRQrk~~~vv~sl~nLLa 938 (943)
+.+++.-+. ..-+..|.||..---.....++|..+|-.=.++|.+.++..+...+...=|.|+
T Consensus 90 ~~i~~~~~~-----------~~~~~~Filpgg~~~~a~Lh~aRtv~RraER~~v~l~~~~~v~~~il~ylNRLS 152 (163)
T PF01923_consen 90 EEIDEYSEE-----------LPPLKGFILPGGSPAAAALHVARTVCRRAERRAVRLFREEEVRPDILRYLNRLS 152 (163)
T ss_dssp HHHHHHHHH-----------S-SESSCEES-SSHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-HHHHHHHHHHH
T ss_pred HHHHHHHhc-----------CCCCceeEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 333332221 112566778876666777899999999999999999999887555444444444
No 64
>PRK01294 lipase chaperone; Provisional
Probab=24.78 E-value=1.1e+03 Score=27.18 Aligned_cols=94 Identities=13% Similarity=0.260 Sum_probs=62.7
Q ss_pred HHHHHHHHH---HHHhhcCCCCHH-HHHHHHHHHHHhCCChHHHHHHHHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHH
Q 002279 771 AEQAFRQQA---EVILADGQLTKA-RIEQLNEVQKQVGLPSEYAQKIIKNITT-TKMAAAIETAVAQGKLNIKQIRELKE 845 (943)
Q Consensus 771 aeqAyrqqa---eqiL~dG~Lt~a-kae~L~eiq~qLgLp~e~AqKiIK~it~-~Kms~~ie~~va~GkL~~~~V~eLke 845 (943)
.|..|++++ -.|..+..|+.+ |...|.++..|| |++. ..-|....+ +.+...+.. +...-.+.++++.++.
T Consensus 183 ~E~~~~~~aL~rl~I~~d~~Ls~~qK~~~l~~L~~qL--P~~~-~~~~~~~~~~~~l~~~~~~-l~~~g~s~~~~~~~r~ 258 (336)
T PRK01294 183 EENQYQRYALERLRIAQDPSLSDAQKAARLAALEAQL--PEDL-RAALQESQRQQALLQQLAQ-LQASGASPQELRLMRA 258 (336)
T ss_pred hHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHHHHhC--CHhh-HHHHHHHHHHHHHHHHHHH-HHhcCCCHHHHHHHHH
Confidence 467889988 788889999887 899999999985 6655 444444443 444443333 3456789999999997
Q ss_pred cccch---hhhccHHHHHHHHHHHHH
Q 002279 846 ASVDL---DNMISESLRENLFKKTVD 868 (943)
Q Consensus 846 ~gV~L---~~~ised~R~~LFrK~V~ 868 (943)
..|.- +.+...|+.+.-|+.-++
T Consensus 259 ~~vG~EaA~RL~~Ld~qr~~wq~r~~ 284 (336)
T PRK01294 259 QLVGPEAAQRLEQLDQQRAAWQQRYD 284 (336)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 76655 333444555555555443
No 65
>TIGR02698 CopY_TcrY copper transport repressor, CopY/TcrY family. This family includes metal-fist type transcriptional repressors of copper transport systems such as copYZAB of Enterococcus hirae and tcrYAZB (transferble copper resistance) of an Enterocuccus faecium plasmid. High levels of copper can displace zinc and prevent binding by the repressor, activating efflux by copper resistance transporters. The most closely related proteins excluded by this model are antibiotic resistance regulators including the methicillin resistance regulatory protein MecI.
Probab=24.60 E-value=75 Score=31.33 Aligned_cols=99 Identities=16% Similarity=0.286 Sum_probs=60.0
Q ss_pred chHHHhhhhhhcccCCChHHHHHHHH---hHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhC--CChHH-----HHH
Q 002279 743 DSEYVLLSQLGGILGLTTKEIVDVHR---GLAEQAFRQQAEVILADGQLTKARIEQLNEVQKQVG--LPSEY-----AQK 812 (943)
Q Consensus 743 qsEf~~LnQLg~ILGL~~kEi~~VH~---~laeqAyrqqaeqiL~dG~Lt~akae~L~eiq~qLg--Lp~e~-----AqK 812 (943)
++|+.-+.-|-.-=+++.+||.+... +++-..-...+.....+|.++..+-. . .-... .+.+. .+.
T Consensus 4 ~~E~~VM~vlW~~~~~t~~eI~~~l~~~~~~~~tTv~T~L~rL~~KG~v~~~k~g---r-~~~Y~p~vs~ee~~~~~~~~ 79 (130)
T TIGR02698 4 DAEWEVMRVVWTLGETTSRDIIRILAEKKDWSDSTIKTLLGRLVDKGCLTTEKEG---R-KFIYTALVSEDEAVENAAQE 79 (130)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHhhccCCcHHHHHHHHHHHHHCCceeeecCC---C-cEEEEecCCHHHHHHHHHHH
Confidence 44544444442222457777777653 46666777788888889988733100 0 00000 12222 345
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 002279 813 IIKNITTTKMAAAIETAVAQGKLNIKQIRELKE 845 (943)
Q Consensus 813 iIK~it~~Kms~~ie~~va~GkL~~~~V~eLke 845 (943)
+++.+....+...+.+++...+||.+++.+|++
T Consensus 80 ~~~~~f~gs~~~ll~~l~~~~~ls~eele~L~~ 112 (130)
T TIGR02698 80 LFSRICSRKVGAVIADLIEESPLSQTDIEKLEK 112 (130)
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 566565566667777799999999999999985
No 66
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=23.37 E-value=1.1e+02 Score=35.35 Aligned_cols=44 Identities=32% Similarity=0.492 Sum_probs=35.9
Q ss_pred HHHhhhhhccCChhhHHHHHHHHHHHHHHHHhhcCCCChHhHHHHHh
Q 002279 490 FLQSLCEELHFDPQKASEIHEEIYRQKLQQCVADGELNDEDVAALLR 536 (943)
Q Consensus 490 ~LQ~lc~~L~Fdpe~A~~iheeIYr~kL~q~Vsd~~Ltdedv~aLlr 536 (943)
-+|+||+.|++-|--=.+++++..+..|. +.|.|+.+|.-.|..
T Consensus 366 dEq~LC~~l~i~PkpyL~LK~~~is~~l~---t~g~f~K~d~~~Lf~ 409 (432)
T COG5114 366 DEQRLCETLNISPKPYLELKKEVISCFLR---TRGEFTKEDFNRLFG 409 (432)
T ss_pred hHHHHHHHhCCCCccHHHHHHHHHHHHHH---hCCCccHHHHHHHhC
Confidence 47999999999999999999999865543 479999997654443
No 67
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase. This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys.
Probab=23.04 E-value=1.5e+02 Score=36.15 Aligned_cols=64 Identities=22% Similarity=0.443 Sum_probs=47.5
Q ss_pred CCHHHHHHHHHcccchhhhccHHHHHHHHHHHHHHHHhcCCCCCchHHHHHhcccccCCCHHHHHHHHHHHH
Q 002279 835 LNIKQIRELKEASVDLDNMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKARRVVHELA 906 (943)
Q Consensus 835 L~~~~V~eLke~gV~L~~~ised~R~~LFrK~V~e~issGtg~fD~ee~~~kip~dL~I~~ekAk~Iv~~~a 906 (943)
|+.+++..+.++|.++++.=-+.+|+-| +..-.|+ .|-++++-+|...|+++...+-+|+.++-
T Consensus 107 is~~~~~~i~~~g~~~~~~~~e~lr~~l------h~ykkg~--idgddl~~eia~~l~~~d~~~~~ild~vf 170 (533)
T TIGR00470 107 LGNEKIEIIENLGIDIDDEKKERLREVF------HLYKKGA--IDGDDLVFEIAKALNVSNEMGLKVLETVF 170 (533)
T ss_pred cCHHHHHHHHHhCCCCChhHHHHHHHHH------HHhhcCC--CccchhHHHHHHhhCCchHHHHHHHHHhC
Confidence 5667777777777777655445555443 4455554 59999999999999999999999997653
No 68
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=22.92 E-value=3.5e+02 Score=28.07 Aligned_cols=64 Identities=16% Similarity=0.165 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCCChHHHHHHHHH----HHHHHHHHHHHHHHHcC
Q 002279 769 GLAEQAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKN----ITTTKMAAAIETAVAQG 833 (943)
Q Consensus 769 ~laeqAyrqqaeqiL~dG~Lt~akae~L~eiq~qLgLp~e~AqKiIK~----it~~Kms~~ie~~va~G 833 (943)
.+.+..|+.+-++....| -+....+.|.++...+||+.+.+..++.. -.+..+..+.+.+...|
T Consensus 109 ~~~~~l~~a~f~~g~~i~-~~~~l~~vL~~~a~~~Gld~~~~~~~l~~~~~~~~~~~l~~~~~~A~~~G 176 (209)
T cd03021 109 TALEALFREFWVRPWSLT-EPITESQSISVAADKLGGSAEQAEKLLKAASTPEVKNRLKENTDEALKYG 176 (209)
T ss_pred HHHHHHHHHHHHHhccCC-CchhhHHHHHHHHHHcCCCcccHHHHHHHccCHHHHHHHHHHHHHHHHcC
Confidence 356667777766666655 33446688999999999999999999853 44556655555555544
No 69
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=22.74 E-value=2.9e+02 Score=28.40 Aligned_cols=58 Identities=19% Similarity=0.344 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhcCCCChHhHHHHHhhHHhhccchHHHHHHHHhhhhhhHHHHHHHH
Q 002279 510 EEIYRQKLQQCVADGELNDEDVAALLRLRVMLCVPQQTVEAAHSDICGSLFEKVVKDA 567 (943)
Q Consensus 510 eeIYr~kL~q~Vsd~~Ltdedv~aLlr~R~~LcIp~~~V~~ah~dicg~lF~k~Vk~A 567 (943)
.+++++-+++...+..|+++|.+.|..+-+.||..+-.-|.-|-+.+..--+...++|
T Consensus 86 ~~~w~~~~~~~~~~~~L~~~d~e~L~~lg~~LG~~D~~~Q~k~i~l~~~~L~~~~~~a 143 (170)
T PF09548_consen 86 AEAWEEAVEKLLKESALKKEDKEILLELGKSLGYSDREMQEKHIELYLEQLEQQLEEA 143 (170)
T ss_pred HHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHH
No 70
>PTZ00015 histone H4; Provisional
Probab=22.55 E-value=1.2e+02 Score=29.73 Aligned_cols=44 Identities=16% Similarity=0.306 Sum_probs=39.5
Q ss_pred CCCCCCCCHHHHHHHHHhhcccchhhhhhHHHHHHHHHHhhccc
Q 002279 152 CNDPGAVKREDIEAIASKYGVSKQDEAFNAELSEIYCRFVTSVL 195 (943)
Q Consensus 152 ~~Dp~~l~~e~v~ai~~kyGvs~~~~~~~~el~~lY~~~~~svi 195 (943)
+|.+..+|+.-|.-|+.+.||-.-.+..-.|++++...|+..|+
T Consensus 25 r~~i~gI~k~~IrRLarr~GvkRIS~d~y~e~r~vle~~l~~I~ 68 (102)
T PTZ00015 25 RDNIRGITKGAIRRLARRGGVKRISGDIYEEVRGVLKAFLENVV 68 (102)
T ss_pred hhcccCCCHHHHHHHHHHcCCccchHHHHHHHHHHHHHHHHHHH
Confidence 56777899999999999999999988887899999999999875
No 71
>COG3133 SlyB Outer membrane lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=22.50 E-value=61 Score=33.40 Aligned_cols=42 Identities=43% Similarity=0.685 Sum_probs=27.9
Q ss_pred HHhhhhhhccccccCCC--CchhHHHHHHHHhhhhhHHHHHhhhc
Q 002279 94 AGAVFAGFKLGSKYGGG--SRNVAIGGAAILGAAGGAMAYAMNAA 136 (943)
Q Consensus 94 a~a~a~G~~~G~~~~~~--~r~aa~~gaav~gaa~~a~a~~~ns~ 136 (943)
+|++-.|+ +|...||| +-.|+++||.+.|.||...--++|+.
T Consensus 66 gG~~lGG~-~g~~iGgG~G~~~At~~GAvAGgvaG~~ie~~~n~~ 109 (154)
T COG3133 66 GGAVLGGF-LGNTIGGGTGRSLATAAGAVAGGVAGQGIEEAMNKT 109 (154)
T ss_pred ccccccce-eeccccCCcchHHHHHHhHhhhhhhhhhhHhhhccC
Confidence 34433444 77777555 33777888888888888877777753
No 72
>PF11264 ThylakoidFormat: Thylakoid formation protein; InterPro: IPR017499 Psp29, originally designated sll1414 (P73956 from SWISSPROT) in Synechocystis sp. (strain PCC 6803), is found universally in Cyanobacteria and in Arabidopsis. It was isolated and partially sequenced from purified photosystem II (PS II) in Synechocystis. While its function is unknown, mutant studies show an impairment in photosystem II biogenesis and/or stability, rather than in PS II core function.; GO: 0010027 thylakoid membrane organization, 0015979 photosynthesis, 0009523 photosystem II
Probab=22.37 E-value=1.6e+02 Score=32.14 Aligned_cols=133 Identities=16% Similarity=0.239 Sum_probs=69.2
Q ss_pred cCCCcceeeeccccCCCCcchHHHHHHHHHHhccCCCC-Cccch--HHH------HHHHHHHHhCCCcchhhHHHHHHhh
Q 002279 395 ARGVGPVSLVGGEFDGDRKMDDLKLLYRAYVTDSLSGG-RMEES--KLA------ALNQLRNIFGLGKRESEAIIVDVTS 465 (943)
Q Consensus 395 ~~G~gpvsl~Gg~~d~d~k~dDLK~LYraYL~e~Ls~G-~l~~~--~~~------~L~~LknifGLg~~EAe~I~~dV~~ 465 (943)
+-+||-||++--=.++=.--+|...||.+|....=-+- ++..+ .+. .+..+.+.+.-...+..+....+..
T Consensus 46 lfalG~vt~fd~fm~GY~p~~~~~~If~Alc~a~~~dp~~~r~dA~~l~~~a~~~s~~~l~~~l~~~~~~~~~~l~~~~~ 125 (216)
T PF11264_consen 46 LFALGLVTVFDRFMQGYPPEEDKDSIFNALCQALGFDPEQYRQDAEKLEEWAKGKSIEDLLSWLSQKGGEGDNPLAAILQ 125 (216)
T ss_pred hHHhhHHHHHHHHhcCCCChhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHhccccccchHHHHHHH
Confidence 45799999873333332244699999999998752111 11111 111 1222333332212233333333322
Q ss_pred H------HHHHH--------HHhhhcCCcccccCChhHHHHhhhhhccCChhhHHHHHHHHHHHHHHHHhhcCCCCh
Q 002279 466 K------VYRKR--------LGQAVSGGALEAADSKASFLQSLCEELHFDPQKASEIHEEIYRQKLQQCVADGELND 528 (943)
Q Consensus 466 k------iYR~r--------L~~~v~sg~le~a~SkA~~LQ~lc~~L~Fdpe~A~~iheeIYr~kL~q~Vsd~~Ltd 528 (943)
. .+..| |-+..........+.....+.+||+.|+|++++... .=.+||..|+.+..-.++=+
T Consensus 126 ~ia~~~~f~YSRl~AIGL~~LLe~a~~~~~~~~~~~~~~l~~l~~~l~ls~~kv~k-DL~lYrsnLeKm~qA~el~e 201 (216)
T PF11264_consen 126 AIASNPKFKYSRLFAIGLFRLLELAGADLVKDEEKRPEALEKLSEALGLSKEKVEK-DLDLYRSNLEKMAQAKELME 201 (216)
T ss_pred HHhcCCCCchHHHHHHHHHHHHHhcCcccccChhhHHHHHHHHHHHcCCCHHHHHh-hHHHHHhHHHHHHHHHHHHH
Confidence 2 22222 223333322233334477999999999999988643 33579888877665444433
No 73
>PLN00035 histone H4; Provisional
Probab=22.09 E-value=1.3e+02 Score=29.39 Aligned_cols=46 Identities=20% Similarity=0.333 Sum_probs=39.9
Q ss_pred HhhhhhcCCCCCCCCCHHHHHHHHHhhcccchhhhhhHHHHHHHHHHhhccc
Q 002279 144 RLHDYVTDCNDPGAVKREDIEAIASKYGVSKQDEAFNAELSEIYCRFVTSVL 195 (943)
Q Consensus 144 ~LhN~~~~~~Dp~~l~~e~v~ai~~kyGvs~~~~~~~~el~~lY~~~~~svi 195 (943)
.|.+.+.+ |++.-|.-|+.+-||-.-......||.++...|++.|+
T Consensus 22 ~~~d~i~~------ipk~~IrRLARr~GvkRIS~~ay~elr~vle~~l~~I~ 67 (103)
T PLN00035 22 VLRDNIQG------ITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVI 67 (103)
T ss_pred HHHhhhcc------CCHHHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHH
Confidence 45666665 78999999999999999988888899999999999876
No 74
>PF11272 DUF3072: Protein of unknown function (DUF3072); InterPro: IPR021425 This bacterial family of proteins has no known function.
Probab=21.94 E-value=2.1e+02 Score=25.64 Aligned_cols=36 Identities=22% Similarity=0.353 Sum_probs=30.0
Q ss_pred hcCCCCHHHHHHHHHHHHHhC------CChHHHHHHHHHHHH
Q 002279 784 ADGQLTKARIEQLNEVQKQVG------LPSEYAQKIIKNITT 819 (943)
Q Consensus 784 ~dG~Lt~akae~L~eiq~qLg------Lp~e~AqKiIK~it~ 819 (943)
+|.+.|.+.+++|..||++-| |+...|++.|..+..
T Consensus 12 GDePmT~aQ~syL~tL~e~Age~~~~~LtkaeAs~rId~L~~ 53 (57)
T PF11272_consen 12 GDEPMTGAQASYLKTLSEEAGEPFPDDLTKAEASERIDELQA 53 (57)
T ss_pred CCCCCcHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHH
Confidence 566799999999999999986 667788888887754
No 75
>PF05527 DUF758: Domain of unknown function (DUF758) ; InterPro: IPR008477 This is a family of eukaryotic proteins with unknown function, which are induced by tumour necrosis factor.; PDB: 3F4M_A.
Probab=21.80 E-value=2e+02 Score=30.78 Aligned_cols=98 Identities=18% Similarity=0.155 Sum_probs=47.6
Q ss_pred hHHHHHHHHHHHHHhhc----CCCCHHHHHHHHHHH---HHhCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Q 002279 769 GLAEQAFRQQAEVILAD----GQLTKARIEQLNEVQ---KQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIR 841 (943)
Q Consensus 769 ~laeqAyrqqaeqiL~d----G~Lt~akae~L~eiq---~qLgLp~e~AqKiIK~it~~Kms~~ie~~va~GkL~~~~V~ 841 (943)
++|=+|=|+.++.+-++ -.++..=.+.|.++. ++.-=+.+.|+||+|+|-+.-+ =+-=....+.+|.+|..
T Consensus 8 ~lalrAQKKilskmask~~ak~fIddtsselLD~ly~l~K~~t~~kkeA~ki~KniIKi~v--Kigvl~rn~qf~~eEl~ 85 (186)
T PF05527_consen 8 SLALRAQKKILSKMASKSVAKMFIDDTSSELLDELYRLLKEYTGNKKEAEKIIKNIIKIVV--KIGVLYRNNQFSDEELA 85 (186)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHH--HHHHHHHTT---HHHHH
T ss_pred hHHHHHHHHHHHhhhhhhhhHHhcCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH--HhheeeecCCCCHHHHH
Confidence 34444445555554333 336666666666665 4444489999999999988544 22227889999999987
Q ss_pred HHHHcccchhhhccHHHHHHHHHHHHHHHHhcCCCCCchH
Q 002279 842 ELKEASVDLDNMISESLRENLFKKTVDEIFSSGTGEFDAE 881 (943)
Q Consensus 842 eLke~gV~L~~~ised~R~~LFrK~V~e~issGtg~fD~e 881 (943)
-+.++. +=|+-..--++|=+..+|..+
T Consensus 86 ~~~~fr-------------~k~~~~amt~iSF~eV~fTfD 112 (186)
T PF05527_consen 86 LAEKFR-------------KKFHQLAMTAISFYEVDFTFD 112 (186)
T ss_dssp HHHHHH-------------HHHHHHHHHHHHHTSTTS---
T ss_pred HHHHHH-------------HHHHHHHHHHhhhcccchhhh
Confidence 765432 224455556777788888777
No 76
>PF12833 HTH_18: Helix-turn-helix domain; PDB: 2K9S_A 3LSG_C 3OIO_A 1D5Y_B 3GBG_A 3OOU_A 1BL0_A 1XS9_A 3MN2_B 3MKL_B ....
Probab=21.65 E-value=3.2e+02 Score=23.68 Aligned_cols=45 Identities=22% Similarity=0.402 Sum_probs=29.9
Q ss_pred HHHHhCCChHHHHHHHHH---------HHHHHHHHHHHHHHHcCCCCHHHHHHH
Q 002279 799 VQKQVGLPSEYAQKIIKN---------ITTTKMAAAIETAVAQGKLNIKQIREL 843 (943)
Q Consensus 799 iq~qLgLp~e~AqKiIK~---------it~~Kms~~ie~~va~GkL~~~~V~eL 843 (943)
|++++|+++.+-+++.+. +...||..+.+-++..+.+++.+|...
T Consensus 1 lA~~~~~s~~~l~~~f~~~~g~s~~~~~~~~R~~~a~~~L~~~~~~~i~~ia~~ 54 (81)
T PF12833_consen 1 LADELGMSERYLSRIFKKETGMSFKQYLRELRLQRAKELLRQNTDLSIAEIAEE 54 (81)
T ss_dssp HHHHCTS-HHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHTT--HHHHHHH
T ss_pred ChHHhCcCHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHhhcccHHHHHHH
Confidence 466777777777777776 556777776666667788888888653
No 77
>smart00526 H15 Domain in histone families 1 and 5.
Probab=21.57 E-value=2.6e+02 Score=24.20 Aligned_cols=60 Identities=17% Similarity=0.214 Sum_probs=46.3
Q ss_pred hHHHHHHHHhhhcCCcccccCChhHHHHhhhhhccCChhhHHHHHHHHHHHHHHHHhhcCCCCh
Q 002279 465 SKVYRKRLGQAVSGGALEAADSKASFLQSLCEELHFDPQKASEIHEEIYRQKLQQCVADGELND 528 (943)
Q Consensus 465 ~kiYR~rL~~~v~sg~le~a~SkA~~LQ~lc~~L~Fdpe~A~~iheeIYr~kL~q~Vsd~~Ltd 528 (943)
.+-|...+.++++.=+=..+.|.++....|.+.-..+|. -+....+..|+.+|++|.|-.
T Consensus 4 hP~~~~mI~eAI~~l~er~GsS~~aI~kyi~~~~~~~~~----~~~~~l~~~Lk~~v~~G~l~q 63 (66)
T smart00526 4 HPPYSEMITEAISALKERKGSSLQAIKKYIEANYKVLPN----NFRSLLKLALKKLVASGKLVQ 63 (66)
T ss_pred CCCHHHHHHHHHHHcCCCCCCCHHHHHHHHHHhCCCChH----HHHHHHHHHHHHHHhcCceee
Confidence 345777888888776556778889899999998666664 345578899999999998753
No 78
>PF13436 Gly-zipper_OmpA: Glycine-zipper containing OmpA-like membrane domain
Probab=21.25 E-value=1.7e+02 Score=28.66 Aligned_cols=33 Identities=33% Similarity=0.321 Sum_probs=18.9
Q ss_pred hhhhhccccccCCCCchhHHHHHHHHhhhhhHHH
Q 002279 97 VFAGFKLGSKYGGGSRNVAIGGAAILGAAGGAMA 130 (943)
Q Consensus 97 ~a~G~~~G~~~~~~~r~aa~~gaav~gaa~~a~a 130 (943)
+++|..+|... .|.-..|.+|+++.+++|+...
T Consensus 64 A~~Ga~~G~~~-~ga~~GAa~Ga~~G~~~g~~~~ 96 (118)
T PF13436_consen 64 AAIGAIIGGNG-RGAAIGAAAGAAVGAAAGAARG 96 (118)
T ss_pred HHHHhhcCCCc-cchHHHHHHHHHHHHHhhhhhh
Confidence 34566677743 3455666677777555554433
No 79
>KOG3816 consensus Cell differentiation regulator of the Headcase family [Signal transduction mechanisms]
Probab=21.16 E-value=25 Score=41.07 Aligned_cols=12 Identities=33% Similarity=0.249 Sum_probs=9.2
Q ss_pred CchhHHHHHHHH
Q 002279 204 GDEVDKIVQFKK 215 (943)
Q Consensus 204 G~E~~~i~~Fk~ 215 (943)
-||.--+.+|+-
T Consensus 117 ~WEsSiL~~~~~ 128 (526)
T KOG3816|consen 117 EWESSILVQFNC 128 (526)
T ss_pred HHHHHHHHHHhc
Confidence 388888888873
No 80
>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription [].; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.
Probab=21.14 E-value=2.2e+02 Score=25.74 Aligned_cols=37 Identities=22% Similarity=0.312 Sum_probs=29.4
Q ss_pred hccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 002279 324 SYRLSDALAEDLFREHTRKLVEENIVTALSILKSRTRV 361 (943)
Q Consensus 324 ~~~LsDe~a~e~fr~~a~k~ve~~is~al~~lk~rt~~ 361 (943)
..+|.++ +++++.+.|-..|+..++.|..+.|-|...
T Consensus 15 ~~~ld~~-vee~Ll~laddFv~~v~~~ac~lAKhR~s~ 51 (68)
T PF03847_consen 15 NEKLDPD-VEELLLELADDFVDDVVSFACRLAKHRKSS 51 (68)
T ss_dssp S----HH-HHHHHHHHHHHHHHHHHHHHHHHHHHTT-S
T ss_pred CCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 3455555 899999999999999999999999999855
No 81
>PF08766 DEK_C: DEK C terminal domain; InterPro: IPR014876 DEK is a chromatin associated protein that is linked with cancers and autoimmune disease. This domain is found at the C-terminal of DEK and is of clinical importance since it can reverse the characteristic abnormal DNA-mutagen sensitivity in fibroblasts from ataxia-telangiectasia (A-T) patients []. The structure of this domain shows it to be homologous to the E2F/DP transcription factor family []. This domain is also found in chitin synthase proteins like Q8TF96 from SWISSPROT, and in protein phosphatases such as Q6NN85 from SWISSPROT. ; PDB: 1Q1V_A.
Probab=21.02 E-value=1.5e+02 Score=25.03 Aligned_cols=45 Identities=16% Similarity=0.415 Sum_probs=29.3
Q ss_pred HhhhhhcCCCCCCCCCHHHH-HHHHHhhcccchhhhhhHHHHHHHHHHh
Q 002279 144 RLHDYVTDCNDPGAVKREDI-EAIASKYGVSKQDEAFNAELSEIYCRFV 191 (943)
Q Consensus 144 ~LhN~~~~~~Dp~~l~~e~v-~ai~~kyGvs~~~~~~~~el~~lY~~~~ 191 (943)
.+...|... |..++|.-+| .++.++||++.. ..+..+.++-..|+
T Consensus 8 ~i~~iL~~~-dl~~vT~k~vr~~Le~~~~~dL~--~~K~~I~~~I~~~l 53 (54)
T PF08766_consen 8 AIREILREA-DLDTVTKKQVREQLEERFGVDLS--SRKKFIKELIDEFL 53 (54)
T ss_dssp HHHHHHTTS--GGG--HHHHHHHHHHH-SS--S--HHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CHhHhhHHHHHHHHHHHHCCCcH--HHHHHHHHHHHHHh
Confidence 355667777 9999998887 689999999998 56667777766665
No 82
>PLN00047 photosystem II biogenesis protein Psb29; Provisional
Probab=21.01 E-value=4.2e+02 Score=30.27 Aligned_cols=109 Identities=17% Similarity=0.213 Sum_probs=0.0
Q ss_pred cCCCCCcchHHHHHHHHHHHHh-ccceeeccccccccccccchHHHhhhhhhcccCCChHHHHHHHH----------hHH
Q 002279 703 LKDDLPERDRTDLYKTYLLYCL-TGEVTKIPFGASITTKKDDSEYVLLSQLGGILGLTTKEIVDVHR----------GLA 771 (943)
Q Consensus 703 LkdDl~~rdr~dLYr~YL~~Cl-sGe~~~~p~G~~i~~~kdqsEf~~LnQLg~ILGL~~kEi~~VH~----------~la 771 (943)
+++.-|+.++.-||..|..-+= .-+.. ..+-..|-+.+. |++..++.+.-. ++|
T Consensus 115 m~GY~Pee~~~~IF~Alc~a~g~Dp~qy-------------r~dA~~l~~~A~--~~s~~~l~~~l~~~~~l~~~l~~IA 179 (283)
T PLN00047 115 MEGYPSDEDRDAIFKAYIKALGEDPEQY-------------RKDAAKLEEWAR--SQTGSSLVDFSSKEGEIEGILKDIA 179 (283)
T ss_pred HccCCChHHHHHHHHHHHHHcCCCHHHH-------------HHHHHHHHHHHh--cCCHHHHHHHHhcchHHHHHHHHHH
Q ss_pred HH-------HHHHHHHHHhhcCCCCHHHH---HHHHHHHHHhCCChHHHHHHHHHHHH--HHHHHHHH
Q 002279 772 EQ-------AFRQQAEVILADGQLTKARI---EQLNEVQKQVGLPSEYAQKIIKNITT--TKMAAAIE 827 (943)
Q Consensus 772 eq-------AyrqqaeqiL~dG~Lt~aka---e~L~eiq~qLgLp~e~AqKiIK~it~--~Kms~~ie 827 (943)
++ .|-+....=|=. -|..+.. +.|.+|++.|||+++..+|=+.=-.. .||.|+.|
T Consensus 180 ~~a~~~~~f~YSRlfAIGLf~-LLe~a~~~d~~~l~~l~e~Lgls~~kv~KDLdlYrsnLeKm~QA~e 246 (283)
T PLN00047 180 ERAGSKGKFSYSRFFAIGLFR-LLELANATEPTALEKLCAALNINKRSVDRDLDVYRGLLSKLVQAKE 246 (283)
T ss_pred HhhccCCCcchHHHHHHHHHH-HHHhcCCCCHHHHHHHHHHcCCCHHHHHhhHHHHHhHHHHHHHHHH
No 83
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=20.92 E-value=65 Score=37.04 Aligned_cols=57 Identities=23% Similarity=0.318 Sum_probs=38.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHcccchhhhccHHHHHHHHHHH
Q 002279 806 PSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDNMISESLRENLFKKT 866 (943)
Q Consensus 806 p~e~AqKiIK~it~~Kms~~ie~~va~GkL~~~~V~eLke~gV~L~~~ised~R~~LFrK~ 866 (943)
..++..++++.|+. .+ +++.++.=|.||.++..+|+++||+--+.=-+- -.++|++.
T Consensus 116 ~~~~i~~~v~~Vk~-~~--~le~c~slG~l~~eq~~~L~~aGvd~ynhNLeT-s~~~y~~I 172 (335)
T COG0502 116 DMEEVVEAIKAVKE-EL--GLEVCASLGMLTEEQAEKLADAGVDRYNHNLET-SPEFYENI 172 (335)
T ss_pred cHHHHHHHHHHHHH-hc--CcHHhhccCCCCHHHHHHHHHcChhheeccccc-CHHHHccc
Confidence 33444555555542 23 578899999999999999999999986552111 45556554
No 84
>PF01031 Dynamin_M: Dynamin central region; InterPro: IPR000375 Dynamin is a microtubule-associated force-producing protein of 100 Kd which is involved in the production of microtubule bundles. At the N terminus of dynamin is a GTPase domain (see IPR001401 from INTERPRO), and at the C terminus is a PH domain (see IPR001849 from INTERPRO). Between these two domains lies a central region of unknown function, which this entry represents.; GO: 0005525 GTP binding; PDB: 3ZVR_A 2AKA_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D 1JWY_B 1JX2_B 3SZR_A ....
Probab=20.34 E-value=1.2e+03 Score=25.71 Aligned_cols=167 Identities=18% Similarity=0.205 Sum_probs=100.2
Q ss_pred HHhhhhhhcccCCChHHHHHHHHhHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHH
Q 002279 746 YVLLSQLGGILGLTTKEIVDVHRGLAEQAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAA 825 (943)
Q Consensus 746 f~~LnQLg~ILGL~~kEi~~VH~~laeqAyrqqaeqiL~dG~Lt~akae~L~eiq~qLgLp~e~AqKiIK~it~~Kms~~ 825 (943)
-..|..||+-..-+..+....-..+..+ |.+.....+ +|.-+.. . ..+.-..-.-|..+-..-....
T Consensus 93 ~~eL~~lG~~~~~~~~~~~~~l~~~~~~-f~~~~~~~i-~G~~~~~-~----------~~~~l~~~ari~~~f~~~~~~~ 159 (295)
T PF01031_consen 93 EKELKRLGPPRPETPEEQRAYLLQIISK-FSRIFKDAI-DGEYSDE-F----------STNELRGGARIRYIFNEWFDKF 159 (295)
T ss_dssp HHHHHTHHHCSSSCHHHHHHHHHHHHHH-HHHHHHHHH-TT------------------TTS--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHH-HHHHHHHHh-cCCcccc-c----------cccccchhhHHHHHHHhhhhhh
Confidence 5678888888888888888877777754 666677776 5554430 0 1111111122233333333333
Q ss_pred HHHHHHcCCCCHHHHHHHHH--cccchhhhccHHHHHHHHHHHHHHHHhcCCCCCchHHHHHhcccccCCCHHHHHHHHH
Q 002279 826 IETAVAQGKLNIKQIRELKE--ASVDLDNMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKARRVVH 903 (943)
Q Consensus 826 ie~~va~GkL~~~~V~eLke--~gV~L~~~ised~R~~LFrK~V~e~issGtg~fD~ee~~~kip~dL~I~~ekAk~Iv~ 903 (943)
+++.-....++.++|+++.+ .|..+-..++...-+.|.++.|+.--.- ..+.++++- +....++.
T Consensus 160 ~~~~~~~~~~~~~eI~~~i~~~~G~elp~f~p~~afe~Li~~~i~~l~~P------a~~cv~~V~-------~~l~~i~~ 226 (295)
T PF01031_consen 160 LEKIDPFEDLSDEEIRTAIRNSRGRELPGFVPESAFESLIRKQIEKLEEP------ALQCVEEVH-------EELQRIVE 226 (295)
T ss_dssp HHHTSHHHHHHHHHHHHHHHH--S-SSS-SCCHHHHHHHHHHHHHTTHHH------HHHHHHHHH-------HHHHHHHH
T ss_pred hhhhccccchhHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHhH------HHHHHHHHH-------HHHHHHHH
Confidence 33333345578999999974 7999999999999999999998543221 123333332 12233333
Q ss_pred HHHHH------HHHHHHHHHHHHHhhhchhhHHHHHHhHhh
Q 002279 904 ELARN------RLSNSLIQAVSLLRQKNRQGVLCQLSRCLG 938 (943)
Q Consensus 904 ~~a~~------R~~n~LvQAVa~LRQrk~~~vv~sl~nLLa 938 (943)
+++.. ++++.+..+|..+-.+-...+...+++|+.
T Consensus 227 ~~~~~~~~~fp~L~~~i~~~v~~~l~~~~~~a~~~i~~li~ 267 (295)
T PF01031_consen 227 QVLEKEFERFPNLKEAIKEAVQQLLEECREPAKEMIENLID 267 (295)
T ss_dssp HHHCHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33322 577788888999989999999999999987
Done!