Query 002279
Match_columns 943
No_of_seqs 43 out of 45
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 19:53:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002279.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002279hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2h5n_A Hypothetical protein PG 95.7 0.074 2.5E-06 50.4 10.9 107 769-898 17-123 (133)
2 2ou3_A Tellurite resistance pr 95.2 0.16 5.5E-06 49.1 11.8 110 775-907 33-142 (161)
3 2h5n_A Hypothetical protein PG 94.0 0.14 4.7E-06 48.5 7.8 81 725-818 32-131 (133)
4 2ou3_A Tellurite resistance pr 93.9 0.4 1.4E-05 46.3 11.2 98 708-819 25-142 (161)
5 2jxu_A TERB, KP-TERB; tellurit 91.4 0.78 2.7E-05 43.4 9.2 115 420-548 34-149 (153)
6 2jxu_A TERB, KP-TERB; tellurit 91.3 0.53 1.8E-05 44.5 7.9 112 773-896 33-147 (153)
7 1uz3_A EMSY protein; chromatin 89.0 4.1 0.00014 38.2 11.4 80 755-834 10-89 (102)
8 2fmm_E Protein EMSY; ENT domai 83.7 15 0.0005 35.9 12.5 80 755-834 2-81 (133)
9 3lf9_A 4E10_D0_1IS1A_001_C (T1 59.0 52 0.0018 31.7 9.6 75 766-844 11-85 (121)
10 2es4_D Lipase chaperone; prote 41.9 1.8E+02 0.006 31.9 11.7 95 771-869 183-285 (332)
11 2elj_A Transcriptional adapter 40.7 42 0.0014 30.1 5.6 44 489-535 25-68 (88)
12 3f4m_A Tumor necrosis factor, 40.2 3E+02 0.01 27.6 12.2 85 785-884 5-92 (161)
13 2w3l_A BCL2-XL, apoptosis regu 37.7 1E+02 0.0036 29.3 8.2 92 711-850 2-95 (144)
14 2cuj_A Transcriptional adaptor 37.6 45 0.0015 31.2 5.5 43 489-535 43-85 (108)
15 3pk1_A Induced myeloid leukemi 35.1 41 0.0014 34.1 5.2 100 710-851 39-138 (189)
16 3mse_B Calcium-dependent prote 35.1 2.7E+02 0.0093 25.6 11.8 101 784-906 52-152 (180)
17 2bec_A Calcineurin B homologou 32.5 56 0.0019 30.7 5.4 53 832-888 128-182 (202)
18 2hpk_A Photoprotein berovin; s 32.3 3.2E+02 0.011 25.6 11.6 159 692-889 18-190 (208)
19 2y6w_A BCL-2-like protein 2; a 31.6 1.7E+02 0.0059 29.0 8.9 116 709-868 20-137 (177)
20 2zko_A NS1, NS1A, non-structur 31.6 1.3E+02 0.0045 26.3 6.8 39 499-539 3-41 (73)
21 1h8a_C AMV V-MYB, MYB transfor 31.2 1.1E+02 0.0037 28.3 7.0 96 414-549 10-105 (128)
22 3jyw_F 60S ribosomal protein L 30.2 43 0.0015 34.4 4.4 19 257-275 155-173 (213)
23 3dtp_E RLC, myosin regulatory 29.9 77 0.0026 30.0 5.9 134 702-888 46-188 (196)
24 1g8i_A Frequenin, neuronal cal 29.8 2.3E+02 0.0079 25.9 9.0 111 748-887 12-125 (190)
25 2fmm_E Protein EMSY; ENT domai 29.8 3.6E+02 0.012 26.4 10.3 47 803-849 3-49 (133)
26 3ll8_B Calcineurin subunit B t 29.3 2.2E+02 0.0074 24.9 8.3 53 831-887 88-142 (155)
27 2qfc_A PLCR protein; TPR, HTH, 29.0 1.3E+02 0.0045 29.7 7.6 74 794-874 8-89 (293)
28 3u3w_A Transcriptional activat 28.6 3.8E+02 0.013 26.3 10.9 93 794-895 8-109 (293)
29 2der_A TRNA-specific 2-thiouri 28.1 31 0.0011 37.9 3.1 48 157-204 184-238 (380)
30 1uz3_A EMSY protein; chromatin 26.8 2.8E+02 0.0096 26.0 8.7 66 506-571 23-88 (102)
31 2aqe_A Transcriptional adaptor 26.6 52 0.0018 29.6 3.8 40 489-532 25-64 (90)
32 2lm1_A Lysine-specific demethy 25.4 19 0.00066 32.6 0.8 49 144-193 48-97 (107)
33 3j04_B Myosin regulatory light 25.1 42 0.0014 29.3 2.9 126 708-886 2-137 (143)
34 1dqe_A PBP, pheromone-binding 24.2 3.1E+02 0.011 25.5 8.8 92 811-908 2-100 (137)
35 1kkx_A Transcription regulator 23.8 37 0.0013 32.1 2.4 45 144-193 52-97 (123)
36 1s1e_A KV channel interacting 22.9 3.6E+02 0.012 26.2 9.3 140 707-888 48-200 (224)
37 2oeq_A Protein of unknown func 22.3 3.3E+02 0.011 25.1 8.4 59 775-833 51-110 (122)
38 1s4k_A Putative cytoplasmic pr 22.0 49 0.0017 31.8 2.8 30 441-470 7-37 (120)
39 1h3o_B Transcription initiatio 22.0 3.1E+02 0.011 24.3 7.7 38 323-361 20-57 (76)
40 2nl9_A Fusion protein consisti 21.7 95 0.0032 30.0 4.9 117 710-868 6-122 (157)
41 2vof_A BCL-2-related protein A 21.6 4.6E+02 0.016 25.3 9.7 49 794-850 55-104 (157)
42 2d8n_A Recoverin; structural g 21.5 2.8E+02 0.0097 25.9 8.0 50 784-845 12-61 (207)
43 1dgu_A Calcium-saturated CIB; 21.4 4.4E+02 0.015 24.0 9.2 143 705-887 12-169 (183)
44 2l2e_A Calcium-binding protein 20.5 1.9E+02 0.0063 26.6 6.4 131 749-905 13-156 (190)
45 3tl4_X Glutaminyl-tRNA synthet 20.2 2.8E+02 0.0096 28.1 8.1 128 794-935 5-154 (187)
No 1
>2h5n_A Hypothetical protein PG_1108; SAD, MCSG,PSI, structural genomics, PR structure initiative; 2.01A {Porphyromonas gingivalis} SCOP: a.287.1.2
Probab=95.65 E-value=0.074 Score=50.39 Aligned_cols=107 Identities=13% Similarity=0.183 Sum_probs=86.0
Q ss_pred hHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHccc
Q 002279 769 GLAEQAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASV 848 (943)
Q Consensus 769 ~laeqAyrqqaeqiL~dG~Lt~akae~L~eiq~qLgLp~e~AqKiIK~it~~Kms~~ie~~va~GkL~~~~V~eLke~gV 848 (943)
.++. .+.=..+++.+||..++++.+++..+..++||+++.+.++++... +....+...+
T Consensus 17 ~l~a-~~aLl~~VA~ADG~v~~~E~~~l~~~l~~lgl~~~e~~~l~~~~~---------------~~~~~~~~~~----- 75 (133)
T 2h5n_A 17 ELTA-IIKMAKSMVMADGKIKPAEIAVMTREFMRFGILQDQVDLLLKASD---------------SIEASQAVAL----- 75 (133)
T ss_dssp HHHH-HHHHHHHHHHTTSCCCHHHHHHHHHHHGGGTCCHHHHHHHHHHHT---------------TSCHHHHHHH-----
T ss_pred HHHH-HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHH---------------hccHHHHHHH-----
Confidence 3444 667778899999999999999999999999999999999998764 1122222221
Q ss_pred chhhhccHHHHHHHHHHHHHHHHhcCCCCCchHHHHHhcccccCCCHHHH
Q 002279 849 DLDNMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKA 898 (943)
Q Consensus 849 ~L~~~ised~R~~LFrK~V~e~issGtg~fD~ee~~~kip~dL~I~~ekA 898 (943)
+ ..++.++|..+.+--+.=+.+||..+-.+.++++++..-|+|+....
T Consensus 76 -~-~~~~~e~r~~ll~~L~~IA~ADG~i~~~E~~lLr~ia~~Lgls~~d~ 123 (133)
T 2h5n_A 76 -I-ARMDEERKKYVASYLGVIMASDGDIDDNELALWTLISTLCGLPTMTV 123 (133)
T ss_dssp -H-HTSCHHHHHHHHHHHHHHSCBTTBCCHHHHHHHHHHHHHHTCCCCCH
T ss_pred -H-HcCCHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHcCCCHHHH
Confidence 2 22568999999999999999999998888899999999999987654
No 2
>2ou3_A Tellurite resistance protein of COG3793; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE I3A; 1.85A {Nostoc punctiforme} SCOP: a.287.1.1
Probab=95.22 E-value=0.16 Score=49.07 Aligned_cols=110 Identities=8% Similarity=0.072 Sum_probs=81.2
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHcccchhhhc
Q 002279 775 FRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDNMI 854 (943)
Q Consensus 775 yrqqaeqiL~dG~Lt~akae~L~eiq~qLgLp~e~AqKiIK~it~~Kms~~ie~~va~GkL~~~~V~eLke~gV~L~~~i 854 (943)
++..+..+-+||..++++++++.++..++|++++....+++ .....+..++ ++ .+..+.
T Consensus 33 ~~all~vAkADG~v~~~E~~~i~~~~~~~~l~~~~~~~l~~---------------~~~~~~l~~~--~~----~i~~~~ 91 (161)
T 2ou3_A 33 MKSVLTCAKADGVISPEEKDWALGFCASWGVADWVIEDLKT---------------YEADEALEEV--IA----RSPQVS 91 (161)
T ss_dssp HHHHHHHHHSSSCCCHHHHHHHHHHHHHTTCCHHHHHHHHH---------------CCCCSCHHHH--HT----TCTTGG
T ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHcCCCHHHHHHHhh---------------ccCCCCHHHH--HH----HHHHHh
Confidence 34444888899999999999999999999999998877766 2223333321 11 121222
Q ss_pred cHHHHHHHHHHHHHHHHhcCCCCCchHHHHHhcccccCCCHHHHHHHHHHHHH
Q 002279 855 SESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKARRVVHELAR 907 (943)
Q Consensus 855 sed~R~~LFrK~V~e~issGtg~fD~ee~~~kip~dL~I~~ekAk~Iv~~~a~ 907 (943)
+ . |..+.+-.+.=++.+|..+..+.++++++...|+|+......+.+....
T Consensus 92 ~-~-~~~~l~~l~~vA~ADG~~~~~E~~~L~~iA~~Lgls~~~~~~l~~~~~~ 142 (161)
T 2ou3_A 92 M-A-QRDILLSAIWVSAADGELHEKEKAKIRKMATILGIKEEIVDQLEQLYYY 142 (161)
T ss_dssp G-C-HHHHHHHHHHHHHTTSSCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred c-c-HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 1 1 3337788888899999999999999999999999999998887665543
No 3
>2h5n_A Hypothetical protein PG_1108; SAD, MCSG,PSI, structural genomics, PR structure initiative; 2.01A {Porphyromonas gingivalis} SCOP: a.287.1.2
Probab=93.96 E-value=0.14 Score=48.55 Aligned_cols=81 Identities=12% Similarity=0.233 Sum_probs=67.4
Q ss_pred ccceeeccccccccccccchHHHhhhhhhcccCCChHHHHHHHHhHH----H---------------HHHHHHHHHHhhc
Q 002279 725 TGEVTKIPFGASITTKKDDSEYVLLSQLGGILGLTTKEIVDVHRGLA----E---------------QAFRQQAEVILAD 785 (943)
Q Consensus 725 sGe~~~~p~G~~i~~~kdqsEf~~LnQLg~ILGL~~kEi~~VH~~la----e---------------qAyrqqaeqiL~d 785 (943)
.|+++ ++|...+.++..-|||+..|...+....- . +...-+.+.+.+|
T Consensus 32 DG~v~-------------~~E~~~l~~~l~~lgl~~~e~~~l~~~~~~~~~~~~~~~~~~~~~e~r~~ll~~L~~IA~AD 98 (133)
T 2h5n_A 32 DGKIK-------------PAEIAVMTREFMRFGILQDQVDLLLKASDSIEASQAVALIARMDEERKKYVASYLGVIMASD 98 (133)
T ss_dssp TSCCC-------------HHHHHHHHHHHGGGTCCHHHHHHHHHHHTTSCHHHHHHHHHTSCHHHHHHHHHHHHHHSCBT
T ss_pred cCCCC-------------HHHHHHHHHHHHHhCcCHHHHHHHHHHHHhccHHHHHHHHHcCCHHHHHHHHHHHHHHhhcC
Confidence 89888 99999999998889999999888887652 1 2233345678899
Q ss_pred CCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 002279 786 GQLTKARIEQLNEVQKQVGLPSEYAQKIIKNIT 818 (943)
Q Consensus 786 G~Lt~akae~L~eiq~qLgLp~e~AqKiIK~it 818 (943)
|.+++.+...|.++++-||+|+...-+.+++.+
T Consensus 99 G~i~~~E~~lLr~ia~~Lgls~~d~~~~~~~~~ 131 (133)
T 2h5n_A 99 GDIDDNELALWTLISTLCGLPTMTVMEAINNMK 131 (133)
T ss_dssp TBCCHHHHHHHHHHHHHHTCCCCCHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHhhh
Confidence 999999999999999999999998877777654
No 4
>2ou3_A Tellurite resistance protein of COG3793; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE I3A; 1.85A {Nostoc punctiforme} SCOP: a.287.1.1
Probab=93.90 E-value=0.4 Score=46.26 Aligned_cols=98 Identities=16% Similarity=0.211 Sum_probs=75.5
Q ss_pred CcchHHHHHHHHHHHHh--ccceeeccccccccccccchHHHhhhhhhcccCCChHHHHHHHH---------------hH
Q 002279 708 PERDRTDLYKTYLLYCL--TGEVTKIPFGASITTKKDDSEYVLLSQLGGILGLTTKEIVDVHR---------------GL 770 (943)
Q Consensus 708 ~~rdr~dLYr~YL~~Cl--sGe~~~~p~G~~i~~~kdqsEf~~LnQLg~ILGL~~kEi~~VH~---------------~l 770 (943)
+..+.....+.= ++.. .|+++ ++|...+.++-.-+|++..+...++. ..
T Consensus 25 ~~~~~~~f~~al-l~vAkADG~v~-------------~~E~~~i~~~~~~~~l~~~~~~~l~~~~~~~~l~~~~~~i~~~ 90 (161)
T 2ou3_A 25 TNEDSSIYMKSV-LTCAKADGVIS-------------PEEKDWALGFCASWGVADWVIEDLKTYEADEALEEVIARSPQV 90 (161)
T ss_dssp CHHHHHHHHHHH-HHHHHSSSCCC-------------HHHHHHHHHHHHHTTCCHHHHHHHHHCCCCSCHHHHHTTCTTG
T ss_pred CHHHHHHHHHHH-HHHHhhcCCCC-------------HHHHHHHHHHHHHcCCCHHHHHHHhhccCCCCHHHHHHHHHHH
Confidence 333344444443 3444 89888 99999999998889999988777665 11
Q ss_pred HH---HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Q 002279 771 AE---QAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITT 819 (943)
Q Consensus 771 ae---qAyrqqaeqiL~dG~Lt~akae~L~eiq~qLgLp~e~AqKiIK~it~ 819 (943)
.+ +...-+...+++||.+++.+.++|.++++.||+++.....+...+..
T Consensus 91 ~~~~~~~l~~l~~vA~ADG~~~~~E~~~L~~iA~~Lgls~~~~~~l~~~~~~ 142 (161)
T 2ou3_A 91 SMAQRDILLSAIWVSAADGELHEKEKAKIRKMATILGIKEEIVDQLEQLYYY 142 (161)
T ss_dssp GGCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 11 16677889999999999999999999999999999999988776654
No 5
>2jxu_A TERB, KP-TERB; tellurite resistance protein, plasmid, unknown function; NMR {Klebsiella pneumoniae ntuh-k2044}
Probab=91.39 E-value=0.78 Score=43.39 Aligned_cols=115 Identities=10% Similarity=0.159 Sum_probs=77.8
Q ss_pred HHHHHHhccCCCCCccchHHHHHHHHHHHh-CCCcchhhHHHHHHhhHHHHHHHHhhhcCCcccccCChhHHHHhhhhhc
Q 002279 420 LYRAYVTDSLSGGRMEESKLAALNQLRNIF-GLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQSLCEEL 498 (943)
Q Consensus 420 LYraYL~e~Ls~G~l~~~~~~~L~~Lknif-GLg~~EAe~I~~dV~~kiYR~rL~~~v~sg~le~a~SkA~~LQ~lc~~L 498 (943)
++..-+.=+-.+|+++.+|...+.++=.-+ ||+..+...+. .+|++.. ..+ +++.......+++.|++ +
T Consensus 34 ~~al~~~vA~ADG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~-----~~~~~~~-~~~---~~~~~~g~~~~~~~i~~-~ 103 (153)
T 2jxu_A 34 TVAVCARIAVASDGVSSEEKQKMIGFLRSSEELKVFDTAEVI-----EFFNKLV-TSF---DFDLEIGKGETMKYILA-L 103 (153)
T ss_dssp HHHHHHHHHCCSSSCCSHHHHHHHHHHHHSGGGSSCCHHHHH-----HHHHHHH-HHT---TTCHHHHHHHHHHHHHC-C
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhCcccCchhHHHHH-----HHHHHHH-Hhc---CcchhhhHHHHHHHHHH-H
Confidence 333344444589999999999998887755 99877765543 3333322 111 11211134568999998 7
Q ss_pred cCChhhHHHHHHHHHHHHHHHHhhcCCCChHhHHHHHhhHHhhccchHHH
Q 002279 499 HFDPQKASEIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCVPQQTV 548 (943)
Q Consensus 499 ~Fdpe~A~~iheeIYr~kL~q~Vsd~~Ltdedv~aLlr~R~~LcIp~~~V 548 (943)
+-+|+. ...+|+--.+=..+||.+++.+...|.++...|+|+.+.+
T Consensus 104 ~~~~~~----~~~~l~~~~~vA~ADG~~~~~E~~~L~~ia~~Lgl~~~~~ 149 (153)
T 2jxu_A 104 KDQPEA----AQLALRVGIAVAKSDGNFDDDEKSAVREIARSLGFDPAEF 149 (153)
T ss_dssp SSSHHH----HHHHHHHHHHHHTTTTSCSSTHHHHHHHHHHHTTSCSSCC
T ss_pred hCCHHH----HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCcCHHHH
Confidence 778876 4445544444445699999999999999999999997653
No 6
>2jxu_A TERB, KP-TERB; tellurite resistance protein, plasmid, unknown function; NMR {Klebsiella pneumoniae ntuh-k2044}
Probab=91.26 E-value=0.53 Score=44.53 Aligned_cols=112 Identities=10% Similarity=0.098 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHHHHHHHHHHcCCCCH--HHHHHHHHcccc
Q 002279 773 QAFRQQAEVILADGQLTKARIEQLNEVQKQV-GLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNI--KQIRELKEASVD 849 (943)
Q Consensus 773 qAyrqqaeqiL~dG~Lt~akae~L~eiq~qL-gLp~e~AqKiIK~it~~Kms~~ie~~va~GkL~~--~~V~eLke~gV~ 849 (943)
-.+.=.+..+-+||..++++.+.+.++-.++ +|++....++++-+..-+ .. -.+.. .-..-+++.+-
T Consensus 33 A~~al~~~vA~ADG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~-~~--------~~~~~~~g~~~~~~~i~~- 102 (153)
T 2jxu_A 33 GTVAVCARIAVASDGVSSEEKQKMIGFLRSSEELKVFDTAEVIEFFNKLV-TS--------FDFDLEIGKGETMKYILA- 102 (153)
T ss_dssp HHHHHHHHHHCCSSSCCSHHHHHHHHHHHHSGGGSSCCHHHHHHHHHHHH-HH--------TTTCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCcccCchhHHHHHHHHHHHH-Hh--------cCcchhhhHHHHHHHHHH-
Confidence 3455566778899999999999999999998 998887777777665544 11 11222 11122222221
Q ss_pred hhhhccHHHHHHHHHHHHHHHHhcCCCCCchHHHHHhcccccCCCHH
Q 002279 850 LDNMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPADLSINAE 896 (943)
Q Consensus 850 L~~~ised~R~~LFrK~V~e~issGtg~fD~ee~~~kip~dL~I~~e 896 (943)
+.. ..+.|..++.-.+.=+..+|..+..+.++++++...|||+..
T Consensus 103 ~~~--~~~~~~~~l~~~~~vA~ADG~~~~~E~~~L~~ia~~Lgl~~~ 147 (153)
T 2jxu_A 103 LKD--QPEAAQLALRVGIAVAKSDGNFDDDEKSAVREIARSLGFDPA 147 (153)
T ss_dssp CSS--SHHHHHHHHHHHHHHHTTTTSCSSTHHHHHHHHHHHTTSCSS
T ss_pred HhC--CHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCcCHH
Confidence 111 367799999999999999999999999999999999999863
No 7
>1uz3_A EMSY protein; chromatin regulator, chromatin regulators, royal family domain; 1.1A {Homo sapiens} SCOP: a.283.1.1 PDB: 1utu_A
Probab=89.02 E-value=4.1 Score=38.16 Aligned_cols=80 Identities=20% Similarity=0.315 Sum_probs=69.6
Q ss_pred ccCCChHHHHHHHHhHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 002279 755 ILGLTTKEIVDVHRGLAEQAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGK 834 (943)
Q Consensus 755 ILGL~~kEi~~VH~~laeqAyrqqaeqiL~dG~Lt~akae~L~eiq~qLgLp~e~AqKiIK~it~~Kms~~ie~~va~Gk 834 (943)
+|-|+..|+...-..|=-.||..-++..-+.|.|+.+|-..|.+|++.|+.+++.=...++.+.....-..|...+..+.
T Consensus 10 ~~d~s~~e~~~~l~~LEleAY~svlrAf~AqG~Lsweke~LLt~LR~~L~IS~eeH~~elrr~~sDe~l~~Ire~~~g~~ 89 (102)
T 1uz3_A 10 LLDLSRDECKRILRKLELEAYAGVISALRAQGDLTKEKKDLLGELSKVLSISTERHRAEVRRAVNDERLTTIAHNMSGPN 89 (102)
T ss_dssp GGCCCHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTCHHHHHHHHHHHCSC
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhcchHHHHHHHHHhcCCC
Confidence 57788889888777899999999999999999999999999999999999999998888888888666666666666554
No 8
>2fmm_E Protein EMSY; ENT domain, chromo shadow domain, EMSY protein, heterochroma protein 1, transcription; 1.80A {Homo sapiens} SCOP: a.283.1.1
Probab=83.66 E-value=15 Score=35.90 Aligned_cols=80 Identities=20% Similarity=0.292 Sum_probs=68.9
Q ss_pred ccCCChHHHHHHHHhHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 002279 755 ILGLTTKEIVDVHRGLAEQAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGK 834 (943)
Q Consensus 755 ILGL~~kEi~~VH~~laeqAyrqqaeqiL~dG~Lt~akae~L~eiq~qLgLp~e~AqKiIK~it~~Kms~~ie~~va~Gk 834 (943)
.|-|+..|+...-..|=-.||..-++..-+.|.|+.+|-..|.+|++.|+.+.+.=...++.+.......-|...+..+.
T Consensus 2 ~ld~~~~e~~~~lr~LEleAY~svl~Af~AqG~LSweke~LLt~LR~~L~IS~eeH~~elrr~~sDe~l~~I~~~~~g~~ 81 (133)
T 2fmm_E 2 PLDLSRDECKRILRKLELEAYAGVISALRAQGDLTKEKKDLLGELSKVLSISTERHRAEVRRAVNDERLTTIAHNMSGPN 81 (133)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHCHHHHHHHHHHHCSC
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhhhHHHHHHHHHhhcCCc
Confidence 47788899988888999999999999999999999999999999999999999998888888888666565665664443
No 9
>3lf9_A 4E10_D0_1IS1A_001_C (T161); epitope-scaffold, immune system; 2.00A {Artificial gene}
Probab=59.03 E-value=52 Score=31.66 Aligned_cols=75 Identities=13% Similarity=0.147 Sum_probs=59.3
Q ss_pred HHHhHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Q 002279 766 VHRGLAEQAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELK 844 (943)
Q Consensus 766 VH~~laeqAyrqqaeqiL~dG~Lt~akae~L~eiq~qLgLp~e~AqKiIK~it~~Kms~~ie~~va~GkL~~~~V~eLk 844 (943)
+.-+-.-.||+.|++.+-+.|+||+++-.-|-++.++. .|.|.--|+||.+.=+- .+..+.-+|.+|.|+++.+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~plTEERRKeLVK~akk~---aEeaKVAIRNIRRDAnd-~lKKl~KdkeISEDe~kr~e 85 (121)
T 3lf9_A 11 ERMDKSVEALKNNLSKVRTGGGGTEERRKDLVKIVRGE---AEGGRVAVRNIARDAAN-DLAALGKDKEVNWFDISQAL 85 (121)
T ss_dssp HHHHHHHHHHHHHHHHCCCSSBCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH-HHHHGGGCTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHhhcCCCCCCHHHHHHHHHHHHHH---HHHHHHHHHHHhHHHHH-HHHHhhhcCCCCHHHHHhHH
Confidence 34444557999999999999999999888887777776 48888889999986553 35556678999999988765
No 10
>2es4_D Lipase chaperone; protein-protein complex, steric chaperone, triacylglycerol hydrolase, all alpha helix protein, A/B hydrolase fold; 1.85A {Burkholderia glumae} SCOP: a.137.15.1
Probab=41.94 E-value=1.8e+02 Score=31.87 Aligned_cols=95 Identities=12% Similarity=0.148 Sum_probs=59.4
Q ss_pred HHHHHHHHH---HHHhhcCCCCHH-HHHHHHHHHHHhCCChHHHHHHHHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHH
Q 002279 771 AEQAFRQQA---EVILADGQLTKA-RIEQLNEVQKQVGLPSEYAQKIIKNITT-TKMAAAIETAVAQGKLNIKQIRELKE 845 (943)
Q Consensus 771 aeqAyrqqa---eqiL~dG~Lt~a-kae~L~eiq~qLgLp~e~AqKiIK~it~-~Kms~~ie~~va~GkL~~~~V~eLke 845 (943)
.|.+|++++ -.|..+..|+.+ |.+.|..+..+ ||++. ++-+++... ..+...++ .+...-.+.++++.++.
T Consensus 183 ~E~~~~~~aL~rl~I~~d~~Ls~~eK~~~l~~l~~q--lP~~~-r~~~~~~~~~~~l~~~~~-~l~~~g~s~~~~~~~R~ 258 (332)
T 2es4_D 183 DEQRRQRHDLERIRIANDTTLSPEQKAARLAALDAQ--LTPDE-RAQQAALHAQQDAVTKIA-DLQKAGATPDQMRAQIA 258 (332)
T ss_dssp HHHHHHHHHHHHHHHHCCC-CC--CHHHHHHHHTTS--CCHHH-HHHHHHHHHHHHHHHHHH-HHHHTTCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCcCCCHHHHHHHHHHHHHh--CCHHH-HHHHHHHHHHHHHHHHHH-HHHhcCCCHHHHHHHHH
Confidence 366777776 347778779988 99999998666 67665 444444443 34443222 33345589999999998
Q ss_pred cccch---hhhccHHHHHHHHHHHHHH
Q 002279 846 ASVDL---DNMISESLRENLFKKTVDE 869 (943)
Q Consensus 846 ~gV~L---~~~ised~R~~LFrK~V~e 869 (943)
..|.- +.+.-.|+.+.-|+.-++.
T Consensus 259 ~~vG~EaA~RL~~Ldqqra~wq~r~~~ 285 (332)
T 2es4_D 259 QTLGPEAAARAAQMQQDDEAWQTRYQA 285 (332)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77765 3445566666666665543
No 11
>2elj_A Transcriptional adapter 2; YDR448W, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Saccharomyces cerevisiae}
Probab=40.67 E-value=42 Score=30.14 Aligned_cols=44 Identities=27% Similarity=0.438 Sum_probs=33.9
Q ss_pred HHHHhhhhhccCChhhHHHHHHHHHHHHHHHHhhcCCCChHhHHHHH
Q 002279 489 SFLQSLCEELHFDPQKASEIHEEIYRQKLQQCVADGELNDEDVAALL 535 (943)
Q Consensus 489 ~~LQ~lc~~L~Fdpe~A~~iheeIYr~kL~q~Vsd~~Ltdedv~aLl 535 (943)
.-++.||..||+.|..=..+++.+.++.+.+ .+.|+..|+..+.
T Consensus 25 ~~E~~LC~~lrL~P~~YL~~K~~Li~E~~k~---g~~lkk~da~~~~ 68 (88)
T 2elj_A 25 NDEQQLCIQLKILPKPYLVLKEVMFRELLKT---GGNLSKSACRELL 68 (88)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH---SSCCCHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh---CCCccHHHHHHHH
Confidence 3589999999999999999999999866432 4458877665433
No 12
>3f4m_A Tumor necrosis factor, alpha-induced protein 8- like protein 2; TIPE2, immune homeostasis, tnfaip8, immune system; 1.70A {Homo sapiens}
Probab=40.16 E-value=3e+02 Score=27.58 Aligned_cols=85 Identities=14% Similarity=0.200 Sum_probs=56.9
Q ss_pred cCCCCHHHHHHHHHHHH---HhCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHcccchhhhccHHHHHH
Q 002279 785 DGQLTKARIEQLNEVQK---QVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDNMISESLREN 861 (943)
Q Consensus 785 dG~Lt~akae~L~eiq~---qLgLp~e~AqKiIK~it~~Kms~~ie~~va~GkL~~~~V~eLke~gV~L~~~ised~R~~ 861 (943)
.-..+..=.+-|.||.+ +.-=+.+.|+||+|+|-+.-+ -|-=....+.+|.+|..-+.++. .
T Consensus 5 ~~fIDdtsselLD~lyrl~K~~t~nkkeA~kv~KniIKi~v--Kigvl~rn~qf~~eEl~~~~~fr------------~- 69 (161)
T 3f4m_A 5 HLFIDETSSEVLDELYRVSKEYTHSRPQAQRVIKDLIKVAI--KVAVLHRNGSFGPSELALATRFR------------Q- 69 (161)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH--HHHHHHHTTCCCHHHHHHHHHHH------------H-
T ss_pred HHhcCccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH--HhheeeecCCCCHHHHHHHHHHH------------H-
Confidence 34566666777777654 444489999999999998544 22338889999999988775443 2
Q ss_pred HHHHHHHHHHhcCCCCCchHHHH
Q 002279 862 LFKKTVDEIFSSGTGEFDAEEVY 884 (943)
Q Consensus 862 LFrK~V~e~issGtg~fD~ee~~ 884 (943)
=|+-..--++|=+..+|..+..|
T Consensus 70 k~~~~amt~iSF~eVdfTfD~~~ 92 (161)
T 3f4m_A 70 KLRQGAMTALSFGEVDFTFEAAV 92 (161)
T ss_dssp HHHHHHHHHHHHTSTTSCCCHHH
T ss_pred HHHHHHHHHhhhhccCccccHHH
Confidence 23444556777777777666433
No 13
>2w3l_A BCL2-XL, apoptosis regulator BCL-2; HET: DRO; 2.10A {Homo sapiens} PDB: 2o2f_A*
Probab=37.69 E-value=1e+02 Score=29.27 Aligned_cols=92 Identities=17% Similarity=0.196 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHh--ccceeeccccccccccccchHHHhhhhhhcccCCChHHHHHHHHhHHHHHHHHHHHHHhhcCCC
Q 002279 711 DRTDLYKTYLLYCL--TGEVTKIPFGASITTKKDDSEYVLLSQLGGILGLTTKEIVDVHRGLAEQAFRQQAEVILADGQL 788 (943)
Q Consensus 711 dr~dLYr~YL~~Cl--sGe~~~~p~G~~i~~~kdqsEf~~LnQLg~ILGL~~kEi~~VH~~laeqAyrqqaeqiL~dG~L 788 (943)
+-+.|.++|+.||+ .| +....+-.+.++..+-+.++++.=+++-
T Consensus 2 ~~~~L~~dyi~~~l~~~g-------------------------~~~~~~~~p~~~~~~Lr~~gdele~~~~--------- 47 (144)
T 2w3l_A 2 DNREIVMKYIHYKLSQRG-------------------------YEWDAGADSEVVHKTLREAGDDFSRRYR--------- 47 (144)
T ss_dssp CHHHHHHHHHHHHHHHTT-------------------------CCCCC---CHHHHHHHHHHHHHHHHHTH---------
T ss_pred cHHHHHHHHHHHHhCCCC-------------------------CCCcCCCcccHHHHHHHHHHHHHHHHhH---------
Q ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHcccch
Q 002279 789 TKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDL 850 (943)
Q Consensus 789 t~akae~L~eiq~qLgLp~e~AqKiIK~it~~Kms~~ie~~va~GkL~~~~V~eLke~gV~L 850 (943)
..+++|+++|.++++.+.+.. .+.+.. .+.+| +|=.+|-.|--++..|
T Consensus 48 -----~~f~~~~~~l~i~~~~~~~~f----~~Va~e----lF~dG-inWGRIValf~F~g~l 95 (144)
T 2w3l_A 48 -----RDFAEMSSGLHLTPFTARGRF----ATVVEE----LFRDG-VNWGRIVAFFEFGGVM 95 (144)
T ss_dssp -----HHHHHHHTTCCCCTTTHHHHH----HHHHHH----HTTTC-CCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHcCCCCccHHHHH----HHHHHH----HhcCC-CCHHHHHHHHHHHHHH
No 14
>2cuj_A Transcriptional adaptor 2-like; transcriptional regulation, nuclear protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.18
Probab=37.59 E-value=45 Score=31.21 Aligned_cols=43 Identities=19% Similarity=0.268 Sum_probs=34.9
Q ss_pred HHHHhhhhhccCChhhHHHHHHHHHHHHHHHHhhcCCCChHhHHHHH
Q 002279 489 SFLQSLCEELHFDPQKASEIHEEIYRQKLQQCVADGELNDEDVAALL 535 (943)
Q Consensus 489 ~~LQ~lc~~L~Fdpe~A~~iheeIYr~kL~q~Vsd~~Ltdedv~aLl 535 (943)
.-++.||..||+.|..=..+++.+.++. ...|.|+..|+..+.
T Consensus 43 ~~E~~LCs~lrL~P~~YL~iK~~Li~E~----~k~g~lkk~dA~~l~ 85 (108)
T 2cuj_A 43 EKEKELCQVVRLVPGAYLEYKSALLNEC----HKQGGLRLAQARALI 85 (108)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHH----HHSSCCCHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHH----HHcCCCcHHHHHHHh
Confidence 3589999999999999999999999876 346778877665443
No 15
>3pk1_A Induced myeloid leukemia cell differentiation Pro 1; BCL-2 family fold, regulation of apoptosis, mitochondri apoptosis-apoptosis regulator complex; 2.49A {Homo sapiens}
Probab=35.09 E-value=41 Score=34.13 Aligned_cols=100 Identities=16% Similarity=0.268 Sum_probs=63.1
Q ss_pred chHHHHHHHHHHHHhccceeeccccccccccccchHHHhhhhhhcccCCChHHHHHHHHhHHHHHHHHHHHHHhhcCCCC
Q 002279 710 RDRTDLYKTYLLYCLTGEVTKIPFGASITTKKDDSEYVLLSQLGGILGLTTKEIVDVHRGLAEQAFRQQAEVILADGQLT 789 (943)
Q Consensus 710 rdr~dLYr~YL~~ClsGe~~~~p~G~~i~~~kdqsEf~~LnQLg~ILGL~~kEi~~VH~~laeqAyrqqaeqiL~dG~Lt 789 (943)
+.-+.|-+.||.+|+.|. ++.+ .||. -|=+.+|+..+-+.++... .
T Consensus 39 ~qs~~l~~~yl~~~~~~~--------------~~~~-----~l~~-~~~~~~~~~~~Lr~vgdEl--------------e 84 (189)
T 3pk1_A 39 RQSLEIISRYLREQATGA--------------KDTK-----PMGR-SGATSRKALETLRRVGDGV--------------Q 84 (189)
T ss_dssp HHHHHHHHHHHHHHHHCC--------------C---------------CHHHHHHHHHHHHHHHH--------------H
T ss_pred HHHHHHHHHHHHHHhccc--------------cccc-----cCCC-CCCchHHHHHHHHHHHHHH--------------H
Confidence 345677889999999882 2221 1322 2222445555555554432 2
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHcccchh
Q 002279 790 KARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLD 851 (943)
Q Consensus 790 ~akae~L~eiq~qLgLp~e~AqKiIK~it~~Kms~~ie~~va~GkL~~~~V~eLke~gV~L~ 851 (943)
..--..+++|+.||.+.++.+.+. +.+-++..+.+|.+|=.+|-.|--+|.-|.
T Consensus 85 ~~~~~~F~~m~~qL~it~~~a~~~--------F~~Va~elF~DGi~NWGRIVaLfaFgg~La 138 (189)
T 3pk1_A 85 RNHETAFQGMLRKLDIKNEDDVKS--------LSRVMIHVFSDGVTNWGRIVTLISFGAFVA 138 (189)
T ss_dssp HHTHHHHHHHHHHHTCCSTTCCHH--------HHHHHHHHTTTSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCchHHHH--------HHHHHHHHhccCCccHHHHHHHHHHHHHHH
Confidence 223346899999999999876432 334455699999999999999998887764
No 16
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum}
Probab=35.08 E-value=2.7e+02 Score=25.64 Aligned_cols=101 Identities=11% Similarity=0.203 Sum_probs=66.1
Q ss_pred hcCCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHcccchhhhccHHHHHHHH
Q 002279 784 ADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDNMISESLRENLF 863 (943)
Q Consensus 784 ~dG~Lt~akae~L~eiq~qLgLp~e~AqKiIK~it~~Kms~~ie~~va~GkL~~~~V~eLke~gV~L~~~ised~R~~LF 863 (943)
++|.++... |..+-..+|++++.+..+++.+-+. .+|+|+.++...+...-... .++.-..+|
T Consensus 52 ~~G~i~~~E---l~~~l~~~g~~~~~~~~~~~~~D~d----------~~g~i~~~Ef~~~~~~~~~~----~~~~~~~~F 114 (180)
T 3mse_B 52 HNGSLSHRE---IYTVLASVGIKKWDINRILQALDIN----------DRGNITYTEFMAGCYRWKNI----ESTFLKAAF 114 (180)
T ss_dssp CSSSEEHHH---HHHHHHHTTCCHHHHHHHHHHHCTT----------CCSEECHHHHHHHHSCCTTC------CHHHHHH
T ss_pred CCCcCCHHH---HHHHHHHcCCCHHHHHHHHHHhCCC----------CCCcCcHHHHHHHHHhcccC----CHHHHHHHH
Confidence 578898875 4456668899987766666554332 37899999988766432221 122334445
Q ss_pred HHHHHHHHhcCCCCCchHHHHHhcccccCCCHHHHHHHHHHHH
Q 002279 864 KKTVDEIFSSGTGEFDAEEVYEKIPADLSINAEKARRVVHELA 906 (943)
Q Consensus 864 rK~V~e~issGtg~fD~ee~~~kip~dL~I~~ekAk~Iv~~~a 906 (943)
+.- =.+|.|.-+.+|+..-+. +.+++.+.+..++..+-
T Consensus 115 ~~~----D~d~~G~I~~~El~~~l~-~~~~~~~~~~~~~~~~d 152 (180)
T 3mse_B 115 NKI----DKDEDGYISKSDIVSLVH-DKVLDNNDIDNFFLSVH 152 (180)
T ss_dssp HHH----CTTCSSCBCHHHHHHHTT-TSSCCHHHHHHHHHHHH
T ss_pred HHH----CCCCCCCCCHHHHHHHHc-CCCCCHHHHHHHHHHhh
Confidence 432 145777778888877776 67899988888776654
No 17
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein, calcium-binding protein, NHE1 regulating protein; 2.70A {Homo sapiens}
Probab=32.51 E-value=56 Score=30.69 Aligned_cols=53 Identities=23% Similarity=0.344 Sum_probs=36.4
Q ss_pred cCCCCHHHHHHHHHc--ccchhhhccHHHHHHHHHHHHHHHHhcCCCCCchHHHHHhcc
Q 002279 832 QGKLNIKQIRELKEA--SVDLDNMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIP 888 (943)
Q Consensus 832 ~GkL~~~~V~eLke~--gV~L~~~ised~R~~LFrK~V~e~issGtg~fD~ee~~~kip 888 (943)
+|.|+.++++.+... |. .++.+....+|+....+.=.+|.|.-+.+|++.-+-
T Consensus 128 dG~Is~~El~~~l~~~~g~----~~~~~~~~~~~~~~~~~~D~d~dG~Is~~EF~~~~~ 182 (202)
T 2bec_A 128 DGKISRHEMLQVLRLMVGV----QVTEEQLENIADRTVQEADEDGDGAVSFVEFTKSLE 182 (202)
T ss_dssp SSEECHHHHHHHHHHSCCS----CCCHHHHHHHHHHHHHHHCSSCSSSEEHHHHHHTTT
T ss_pred CCeEcHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHHHcCCCCCCcCcHHHHHHHHH
Confidence 577888888877643 43 256666777777766656567777778888776553
No 18
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Beroe abyssicola}
Probab=32.30 E-value=3.2e+02 Score=25.59 Aligned_cols=159 Identities=11% Similarity=0.213 Sum_probs=84.3
Q ss_pred hcCCCCCcccccCCCCCcchHHHHHHHHHHHHh--ccceeeccccccccccccchHH-HhhhhhhcccCCChHHHHHHHH
Q 002279 692 KMGKPGQTEINLKDDLPERDRTDLYKTYLLYCL--TGEVTKIPFGASITTKKDDSEY-VLLSQLGGILGLTTKEIVDVHR 768 (943)
Q Consensus 692 ~~G~~sq~eItLkdDl~~rdr~dLYr~YL~~Cl--sGe~~~~p~G~~i~~~kdqsEf-~~LnQLg~ILGL~~kEi~~VH~ 768 (943)
.+|...+..+ ..+.+..+..+.+.|-.+.- +|.++ -.|| ..|..+|....++..|+..+..
T Consensus 18 ~~~~~~~~~~---~~l~~~~~~~l~~~F~~~D~d~~G~i~-------------~~El~~~l~~~~~~~~~~~~~~~~l~~ 81 (208)
T 2hpk_A 18 SVGNQWQFNV---EDLHPKMLSRLYKRFDTFDLDSDGKME-------------MDEVLYWPDRMRQLVNATDEQVEKMRD 81 (208)
T ss_dssp HHTCCCCCC------------CHHHHHHHHHCTTCSSEEC-------------HHHHTHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HhcccCcccH---HHcCHHHHHHHHHHHHHhCCCCCCCCC-------------HHHHHHHHHHHHhhcCCCHHHHHHHHH
Confidence 3555444433 45777778888888888777 55444 5564 4466676655788888888876
Q ss_pred hHHHHHHHHHHHHH--hhcCCCCHHHHHHHHHHH------H--HhCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHH
Q 002279 769 GLAEQAFRQQAEVI--LADGQLTKARIEQLNEVQ------K--QVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIK 838 (943)
Q Consensus 769 ~laeqAyrqqaeqi--L~dG~Lt~akae~L~eiq------~--qLgLp~e~AqKiIK~it~~Kms~~ie~~va~GkL~~~ 838 (943)
.+ ...| ..+ =++|.++-..- +.-+. . .+.-+++....+++.+-+. +- .=.+|.|+.+
T Consensus 82 ~~-~~lf----~~~D~d~dg~i~~~EF--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~~-~D-----~d~~G~Is~~ 148 (208)
T 2hpk_A 82 AV-RVFF----LHKGVEPVNGLLREDW--VEANRVFAEAERERERRGEPSLIALLSNSYYDV-LD-----DDGDGTVDVD 148 (208)
T ss_dssp HH-HHHH----HHTTCBTTTBEEGGGH--HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH-HC-----TTCSSSBCHH
T ss_pred HH-HHHH----HHhCCCCCCeEcHHHH--HHHHHHHhhhhhhhhccCChHHHHHHHHHHHHH-hC-----CCCCCcCCHH
Confidence 65 2211 222 15677877643 32222 2 3433333322222211110 00 0136999999
Q ss_pred HHHHHH-HcccchhhhccHHHHHHHHHHHHHHHHhcCCCCCchHHHHHhccc
Q 002279 839 QIRELK-EASVDLDNMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPA 889 (943)
Q Consensus 839 ~V~eLk-e~gV~L~~~ised~R~~LFrK~V~e~issGtg~fD~ee~~~kip~ 889 (943)
+.+.+. ..| ++++....+|+.. =.+|.|.-+.+|++.-+-.
T Consensus 149 El~~~l~~~g------~~~~~~~~~~~~~----D~d~dG~I~~~EF~~~~~~ 190 (208)
T 2hpk_A 149 ELKTMMKAFD------VPQEAAYTFFEKA----DTDKSGKLERTELVHLFRK 190 (208)
T ss_dssp HHHHHHHHTT------SCTTHHHHHHHHH----CTTCCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHhC------cCHHHHHHHHHHh----CCCCCCcCcHHHHHHHHHH
Confidence 998876 444 5556666676642 2466777777877765543
No 19
>2y6w_A BCL-2-like protein 2; apoptosis; HET: PGE; 2.00A {Homo sapiens} PDB: 1mk3_A 1zy3_A
Probab=31.63 E-value=1.7e+02 Score=28.97 Aligned_cols=116 Identities=13% Similarity=0.107 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHHHHh--ccceeeccccccccccccchHHHhhhhhhcccCCChHHHHHHHHhHHHHHHHHHHHHHhhcC
Q 002279 709 ERDRTDLYKTYLLYCL--TGEVTKIPFGASITTKKDDSEYVLLSQLGGILGLTTKEIVDVHRGLAEQAFRQQAEVILADG 786 (943)
Q Consensus 709 ~rdr~dLYr~YL~~Cl--sGe~~~~p~G~~i~~~kdqsEf~~LnQLg~ILGL~~kEi~~VH~~laeqAyrqqaeqiL~dG 786 (943)
..+...|.++|+-||+ .|-...-. +-.+-+..++....+.++++.=++
T Consensus 20 ~~~~~~L~~dYi~y~l~~~g~~~~~~---------------------~~~~p~~~~v~~~Lr~~gdele~~--------- 69 (177)
T 2y6w_A 20 APDTRALVADFVGYKLRQKGYVSGAG---------------------PGEGPAADPLHQAMRAAGDEFETR--------- 69 (177)
T ss_dssp CCCHHHHHHHHHHHHHHHTTSCCSSS---------------------TTSSCCSSHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCC---------------------CCCCCchhHHHHHHHHHHHHHHHH---------
Q ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHcccchhhhccHHHHHHHHHHH
Q 002279 787 QLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDNMISESLRENLFKKT 866 (943)
Q Consensus 787 ~Lt~akae~L~eiq~qLgLp~e~AqKiIK~it~~Kms~~ie~~va~GkL~~~~V~eLke~gV~L~~~ised~R~~LFrK~ 866 (943)
--..+.+|++||.++++.+ .+...+-++..+.+| +|=.+|-.|--++..|....-......+.+..
T Consensus 70 -----~~~~f~~~~~~l~i~~~~~--------~~~f~~Va~elF~dG-inWGRIVaLfaF~g~La~~~~~~~~~~~v~~I 135 (177)
T 2y6w_A 70 -----FRRTFSDLAAQLHVTPGSA--------QQRFTQVSDELFQGG-PNWGRLVAFFVFGAALCAESVNKEMEPLVGQV 135 (177)
T ss_dssp -----HHHHHHHHHHHHHHCGGGH--------HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHH
T ss_pred -----hHHHHHHHHHhcCCCCccH--------HHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHHcCChHHHHHH
Q ss_pred HH
Q 002279 867 VD 868 (943)
Q Consensus 867 V~ 868 (943)
++
T Consensus 136 ~~ 137 (177)
T 2y6w_A 136 QE 137 (177)
T ss_dssp HH
T ss_pred HH
No 20
>2zko_A NS1, NS1A, non-structural protein 1; dsRNA, protein-RNA interaction; 1.70A {Influenza a virus} PDB: 2z0a_A 1ns1_A 1ail_A 3m8a_A
Probab=31.57 E-value=1.3e+02 Score=26.30 Aligned_cols=39 Identities=36% Similarity=0.514 Sum_probs=34.7
Q ss_pred cCChhhHHHHHHHHHHHHHHHHhhcCCCChHhHHHHHhhHH
Q 002279 499 HFDPQKASEIHEEIYRQKLQQCVADGELNDEDVAALLRLRV 539 (943)
Q Consensus 499 ~Fdpe~A~~iheeIYr~kL~q~Vsd~~Ltdedv~aLlr~R~ 539 (943)
|.|+..-+-||-.-|-=-..+-++|-+|+|. .||.|+||
T Consensus 3 hMdsnTvssFQvdcflWHvrkrfadq~lgDA--PFldRlrR 41 (73)
T 2zko_A 3 HMDPNTVSSFQVDCFLWHVRKRVADQELGDA--PFLDRLRR 41 (73)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHHHHHTTCCCH--HHHHHHHH
T ss_pred CCCCCcceeeeeeehhHHHHHHhhhcccccc--hHHHHHHH
Confidence 6789999999999998888888999999987 99999997
No 21
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=31.20 E-value=1.1e+02 Score=28.30 Aligned_cols=96 Identities=7% Similarity=0.082 Sum_probs=58.5
Q ss_pred chHHHHHHHHHHhccCCCCCccchHHHHHHHHHHHhCCCcchhhHHHHHHhhHHHHHHHHhhhcCCcccccCChhHHHHh
Q 002279 414 MDDLKLLYRAYVTDSLSGGRMEESKLAALNQLRNIFGLGKRESEAIIVDVTSKVYRKRLGQAVSGGALEAADSKASFLQS 493 (943)
Q Consensus 414 ~dDLK~LYraYL~e~Ls~G~l~~~~~~~L~~LknifGLg~~EAe~I~~dV~~kiYR~rL~~~v~sg~le~a~SkA~~LQ~ 493 (943)
......=|..||.-.+.-|.+|.+|...|.++-+.+|-++= ..+++.+. +-+....-++
T Consensus 10 ~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W---------------~~Ia~~l~------~Rt~~qcr~R 68 (128)
T 1h8a_C 10 DVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRW---------------SDIAKHLK------GRIGKQCRER 68 (128)
T ss_dssp ------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCH---------------HHHHHHSS------SCCHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCH---------------HHHHHHhc------CCcHHHHHHH
Confidence 34556678888988899999999999999999999986531 12222221 1233334444
Q ss_pred hhhhccCChhhHHHHHHHHHHHHHHHHhhcCCCChHhHHHHHhhHHhhccchHHHH
Q 002279 494 LCEELHFDPQKASEIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCVPQQTVE 549 (943)
Q Consensus 494 lc~~L~Fdpe~A~~iheeIYr~kL~q~Vsd~~Ltdedv~aLlr~R~~LcIp~~~V~ 549 (943)
|...|..-+..+.+|+||...|+..-..++-.|..|-
T Consensus 69 -------------------w~~~l~p~~~~~~WT~eEd~~L~~~~~~~G~~W~~Ia 105 (128)
T 1h8a_C 69 -------------------WHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIA 105 (128)
T ss_dssp -------------------HHHTTCSSSCCSCCCHHHHHHHHHHHHHHCSCHHHHG
T ss_pred -------------------HHHhcccccccccCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 5444444456889999999999999888887766553
No 22
>3jyw_F 60S ribosomal protein L7(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_F
Probab=30.17 E-value=43 Score=34.39 Aligned_cols=19 Identities=32% Similarity=0.429 Sum_probs=12.1
Q ss_pred hhhheehhccccccccccc
Q 002279 257 KLIYVSTLVFGEASSFLLP 275 (943)
Q Consensus 257 kLiyvS~lvFg~~s~FLLP 275 (943)
.=||-..-.|-+...||.|
T Consensus 155 ~ei~~~g~~f~~~~~fl~p 173 (213)
T 3jyw_F 155 HEIITVGPHFKQANNFLWP 173 (213)
T ss_dssp HHHTTTCSSCTTTTTSCSS
T ss_pred HHHHhCCcCHHHhhCCCCC
Confidence 3345555567777778777
No 23
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=29.86 E-value=77 Score=30.03 Aligned_cols=134 Identities=13% Similarity=0.117 Sum_probs=80.5
Q ss_pred ccCCCCCcchHHHHHHHHHHHHh--ccceeeccccccccccccchHHHh-hhhhhcccCCChHHHHHHHHhHHHHHHHHH
Q 002279 702 NLKDDLPERDRTDLYKTYLLYCL--TGEVTKIPFGASITTKKDDSEYVL-LSQLGGILGLTTKEIVDVHRGLAEQAFRQQ 778 (943)
Q Consensus 702 tLkdDl~~rdr~dLYr~YL~~Cl--sGe~~~~p~G~~i~~~kdqsEf~~-LnQLg~ILGL~~kEi~~VH~~laeqAyrqq 778 (943)
..-..++...+..|++.|-.+.- +|.++ -.||.. |..|| +.++..++..+...+
T Consensus 46 ~~~~~ls~~~~~~l~~~F~~~D~d~~G~i~-------------~~el~~~l~~lg--~~~~~~~~~~l~~~~-------- 102 (196)
T 3dtp_E 46 NVFAMFTQHQVQEFKEAFQLIDQDKDGFIS-------------KNDIRATFDSLG--RLCTEQELDSMVAEA-------- 102 (196)
T ss_dssp CSSCSSCTTTHHHHHHHHHHHCCSCSSBCC-------------HHHHHHHHHTTS--CCCCHHHHHHHHTTS--------
T ss_pred hhhhhCCHHHHHHHHHHHHHHCCCCCCcCC-------------HHHHHHHHHHhC--CCCCHHHHHHHHHHc--------
Confidence 33456888899999999988887 55444 556543 56665 457777777666543
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHH------HcCCCCHHHHHHHHHcccchhh
Q 002279 779 AEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAV------AQGKLNIKQIRELKEASVDLDN 852 (943)
Q Consensus 779 aeqiL~dG~Lt~akae~L~eiq~qLgLp~e~AqKiIK~it~~Kms~~ie~~v------a~GkL~~~~V~eLke~gV~L~~ 852 (943)
+|.++-.. |+.-+...+.-... ...+ ..++ .+|.|+.++++.+...|.
T Consensus 103 ------~g~i~~~e--F~~~~~~~~~~~~~----------~~~l----~~~F~~~D~d~~G~Is~~El~~~l~~g~---- 156 (196)
T 3dtp_E 103 ------PGPINFTM--FLTIFGDRIAGTDE----------EDVI----VNAFNLFDEGDGKCKEETLKRSLTTWGE---- 156 (196)
T ss_dssp ------SSCCBHHH--HHHHHHHCCCSSCC----------HHHH----HHHHHTTCSSSSCCBHHHHHHHHHHSSS----
T ss_pred ------cCCCcHHH--HHHHHHHHhcCCCc----------HHHH----HHHHHHHCCCCCCcCcHHHHHHHHHcCC----
Confidence 89888753 44444443321110 0111 2233 259999999998884443
Q ss_pred hccHHHHHHHHHHHHHHHHhcCCCCCchHHHHHhcc
Q 002279 853 MISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIP 888 (943)
Q Consensus 853 ~ised~R~~LFrK~V~e~issGtg~fD~ee~~~kip 888 (943)
.++.+....||+.. =.+|.|.-+.++++.-+.
T Consensus 157 ~~~~~~~~~l~~~~----D~d~dG~I~~~EF~~~l~ 188 (196)
T 3dtp_E 157 KFSQDEVDQALSEA----PIDGNGLIDIKKFAQILT 188 (196)
T ss_dssp CCCHHHHHHHHHSS----CEETTEECHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHc----CCCCCCEEeHHHHHHHHH
Confidence 34555555555432 235666667777766543
No 24
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein, EF-hand, calcium ION, metal binding protein; HET: 1PE P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Probab=29.83 E-value=2.3e+02 Score=25.85 Aligned_cols=111 Identities=17% Similarity=0.256 Sum_probs=63.6
Q ss_pred hhhhhhcccCCChHHHHHHHHhHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHh---CCChHHHHHHHHHHHHHHHHH
Q 002279 748 LLSQLGGILGLTTKEIVDVHRGLAEQAFRQQAEVILADGQLTKARIEQLNEVQKQV---GLPSEYAQKIIKNITTTKMAA 824 (943)
Q Consensus 748 ~LnQLg~ILGL~~kEi~~VH~~laeqAyrqqaeqiL~dG~Lt~akae~L~eiq~qL---gLp~e~AqKiIK~it~~Kms~ 824 (943)
.+.+|...++++..|+..+.... ... =++|.++.+... .+...+ +.|.+....+.+.+-+.
T Consensus 12 ~l~~l~~~~~~~~~~i~~~f~~f-----d~~----~~~G~i~~~e~~---~~l~~~~~~~~~~~~~~~~f~~~D~d---- 75 (190)
T 1g8i_A 12 VVEELTRKTYFTEKEVQQWYKGF-----IKD----CPSGQLDAAGFQ---KIYKQFFPFGDPTKFATFVFNVFDEN---- 75 (190)
T ss_dssp HHHHHHHTSSSCHHHHHHHHHHH-----HHH----CTTSEEEHHHHH---HHHHHHCTTSCTHHHHHHHHHHHCTT----
T ss_pred HHHHHHHccCCCHHHHHHHHHHH-----HHh----CCCCcCCHHHHH---HHHHHhCCCCChHHHHHHHHHHHhcC----
Confidence 46667778899999988865542 211 268999987543 333444 66766655555444322
Q ss_pred HHHHHHHcCCCCHHHHHHHHHcccchhhhccHHHHHHHHHHHHHHHHhcCCCCCchHHHHHhc
Q 002279 825 AIETAVAQGKLNIKQIRELKEASVDLDNMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKI 887 (943)
Q Consensus 825 ~ie~~va~GkL~~~~V~eLke~gV~L~~~ised~R~~LFrK~V~e~issGtg~fD~ee~~~ki 887 (943)
.+|+|+.++...+...- ....+++.-..+|+.. =.+|.|.-+.+|+..-+
T Consensus 76 ------~~g~i~~~ef~~~~~~~---~~~~~~~~~~~~f~~~----D~d~~G~i~~~e~~~~l 125 (190)
T 1g8i_A 76 ------KDGRIEFSEFIQALSVT---SRGTLDEKLRWAFKLY----DLDNDGYITRNEMLDIV 125 (190)
T ss_dssp ------CSSEEEHHHHHHHHHHH---HHCCHHHHHHHHHHHH----CTTCSSEEEHHHHHHHH
T ss_pred ------CCCeEeHHHHHHHHHHh---cCCCHHHHHHHHHHhh----cCCCCCeECHHHHHHHH
Confidence 36889988887665321 1112333334455422 23566666777665433
No 25
>2fmm_E Protein EMSY; ENT domain, chromo shadow domain, EMSY protein, heterochroma protein 1, transcription; 1.80A {Homo sapiens} SCOP: a.283.1.1
Probab=29.81 E-value=3.6e+02 Score=26.39 Aligned_cols=47 Identities=23% Similarity=0.295 Sum_probs=38.2
Q ss_pred hCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHcccc
Q 002279 803 VGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVD 849 (943)
Q Consensus 803 LgLp~e~AqKiIK~it~~Kms~~ie~~va~GkL~~~~V~eLke~gV~ 849 (943)
|-|+.++|...|+.+...-+++-+.++.+||-||-++-.-|-+++..
T Consensus 3 ld~~~~e~~~~lr~LEleAY~svl~Af~AqG~LSweke~LLt~LR~~ 49 (133)
T 2fmm_E 3 LDLSRDECKRILRKLELEAYAGVISALRAQGDLTKEKKDLLGELSKV 49 (133)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 56788888899999988889998999999999998887766655533
No 26
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B* 2p6b_B 1aui_B 1m63_B* 1tco_B*
Probab=29.27 E-value=2.2e+02 Score=24.85 Aligned_cols=53 Identities=13% Similarity=0.224 Sum_probs=39.1
Q ss_pred HcCCCCHHHHHHHHHc--ccchhhhccHHHHHHHHHHHHHHHHhcCCCCCchHHHHHhc
Q 002279 831 AQGKLNIKQIRELKEA--SVDLDNMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKI 887 (943)
Q Consensus 831 a~GkL~~~~V~eLke~--gV~L~~~ised~R~~LFrK~V~e~issGtg~fD~ee~~~ki 887 (943)
.+|.||.++++.+... |. .++.+....+|+......=.+|.|.-+.++++.-+
T Consensus 88 ~~G~i~~~e~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~ 142 (155)
T 3ll8_B 88 KDGYISNGELFQVLKMMVGN----NLKDTQLQQIVDKTIINADKDGDGRISFEEFCAVV 142 (155)
T ss_dssp CSSCBCHHHHHHHHHHHHGG----GSCHHHHHHHHHHHHHHHCTTSSSSBCHHHHHHHH
T ss_pred CCCcCcHHHHHHHHHHHhcc----CCCHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 4689999999988754 43 36677778888887666667788877878776544
No 27
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=29.02 E-value=1.3e+02 Score=29.69 Aligned_cols=74 Identities=11% Similarity=0.219 Sum_probs=49.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHcCC--CCHHHHHHHH-HcccchhhhccH-----HHHHHHHHH
Q 002279 794 EQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGK--LNIKQIRELK-EASVDLDNMISE-----SLRENLFKK 865 (943)
Q Consensus 794 e~L~eiq~qLgLp~e~AqKiIK~it~~Kms~~ie~~va~Gk--L~~~~V~eLk-e~gV~L~~~ise-----d~R~~LFrK 865 (943)
+.|.+++++.||+.+.-.+-+ +++..++. ++.|+ .+.+.+..+- .+||+++.++.. +....-|..
T Consensus 8 ~~i~~~r~~~~~tq~~la~~~--~s~~~is~-----~e~g~~~~~~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~l~~ 80 (293)
T 2qfc_A 8 SEIKKIRVLRGLTQKQLSENI--CHQSEVSR-----IESGAVYPSMDILQGIAAKLQIPIIHFYEVLIYSDIERKKQFKD 80 (293)
T ss_dssp HHHHHHHHHHTCCTTTTTTTT--SCHHHHHH-----HHTSSSCCCHHHHHHHTTTSCCCTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHH--cCHHHHHH-----HHCCCCCCCHHHHHHHHHHhCcCHHHHhccccccchhHHHHHHH
Confidence 578899999999998766666 66666644 77887 5777777776 688988776542 233334444
Q ss_pred HHHHHHhcC
Q 002279 866 TVDEIFSSG 874 (943)
Q Consensus 866 ~V~e~issG 874 (943)
.+...+..|
T Consensus 81 ~~~~~~~~~ 89 (293)
T 2qfc_A 81 QVIMLCKQK 89 (293)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhh
Confidence 555555544
No 28
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=28.55 E-value=3.8e+02 Score=26.32 Aligned_cols=93 Identities=9% Similarity=0.144 Sum_probs=60.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHcCC--CCHHHHHHHH-HcccchhhhccH-----HHHHHHHHH
Q 002279 794 EQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGK--LNIKQIRELK-EASVDLDNMISE-----SLRENLFKK 865 (943)
Q Consensus 794 e~L~eiq~qLgLp~e~AqKiIK~it~~Kms~~ie~~va~Gk--L~~~~V~eLk-e~gV~L~~~ise-----d~R~~LFrK 865 (943)
+.|.+++++.||+.+...+-+ +++.-++. ++.|+ .+.+.+..|- .+||+++.++.. ......|..
T Consensus 8 ~~i~~~R~~~~~tq~~la~~~--~s~~~~s~-----~e~g~~~~~~~~l~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 80 (293)
T 3u3w_A 8 SEIKKIRVLRGLTQKQLSENI--CHQSEVSR-----IESGAVYPSMDILQGIAAKLQIPIIHFYEVLIYSDIERKKQFKD 80 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHTTT--SCHHHHHH-----HHTTSCCCCHHHHHHHHHHHTCCTHHHHHTTTSSCHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHh--CCHHHHHH-----HHCCCCCCCHHHHHHHHHHhCcCHHHHhCCCCCCcchhHHHHHH
Confidence 578999999999998877766 66666644 77886 6777777776 689999766432 223344455
Q ss_pred HHHHHHhcCCCCCchH-HHHHhcccccCCCH
Q 002279 866 TVDEIFSSGTGEFDAE-EVYEKIPADLSINA 895 (943)
Q Consensus 866 ~V~e~issGtg~fD~e-e~~~kip~dL~I~~ 895 (943)
.+...+..| .|+.. +.++++-.....+.
T Consensus 81 ~i~~~~~~~--~y~~a~~~~~~~l~~~~~~~ 109 (293)
T 3u3w_A 81 QVIMLCKQK--RYKEIYNKVWNELKKEEYHP 109 (293)
T ss_dssp HHHHHHHTT--CHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHh--hHHHHHHHHHHHhccccCCh
Confidence 566666664 44444 56666544333333
No 29
>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*
Probab=28.10 E-value=31 Score=37.93 Aligned_cols=48 Identities=21% Similarity=0.445 Sum_probs=28.5
Q ss_pred CCCHHHHHHHHHhhcccchhhhhhHHHHHH----HHHHhhcccC--CCC-CCCCC
Q 002279 157 AVKREDIEAIASKYGVSKQDEAFNAELSEI----YCRFVTSVLP--PGG-EDLRG 204 (943)
Q Consensus 157 ~l~~e~v~ai~~kyGvs~~~~~~~~el~~l----Y~~~~~sviP--~g~-~~lkG 204 (943)
.++++||.+++.++|+.......+.++|=+ |..||...+| ||. .|..|
T Consensus 184 ~~~K~eVr~~A~~~Gl~~~~kp~s~~~cf~~~~~~~~fL~~~~~~~pG~~vd~~g 238 (380)
T 2der_A 184 ELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIITVDG 238 (380)
T ss_dssp GSCHHHHHHHHHHTTCC----------------CHHHHHHTTSCCCCCEEEETTC
T ss_pred CCCHHHHHHHHHHcCCCCccCCCCCCccccCchHHHHHHHHhhhhCCCCEEeeCC
Confidence 479999999999999998776777788865 9999999887 453 24444
No 30
>1uz3_A EMSY protein; chromatin regulator, chromatin regulators, royal family domain; 1.1A {Homo sapiens} SCOP: a.283.1.1 PDB: 1utu_A
Probab=26.79 E-value=2.8e+02 Score=26.00 Aligned_cols=66 Identities=17% Similarity=0.180 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCCChHhHHHHHhhHHhhccchHHHHHHHHhhhhhhHHHHHHHHHhcC
Q 002279 506 SEIHEEIYRQKLQQCVADGELNDEDVAALLRLRVMLCVPQQTVEAAHSDICGSLFEKVVKDAISSG 571 (943)
Q Consensus 506 ~~iheeIYr~kL~q~Vsd~~Ltdedv~aLlr~R~~LcIp~~~V~~ah~dicg~lF~k~Vk~Ai~aG 571 (943)
..+.-+-|.-.|..+-+.|.||-++-.-|-.+|+.|+|+++-=-...+-.+..---+.|.+.+.++
T Consensus 23 ~~LEleAY~svlrAf~AqG~Lsweke~LLt~LR~~L~IS~eeH~~elrr~~sDe~l~~Ire~~~g~ 88 (102)
T 1uz3_A 23 RKLELEAYAGVISALRAQGDLTKEKKDLLGELSKVLSISTERHRAEVRRAVNDERLTTIAHNMSGP 88 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHTCHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHhcchHHHHHHHHHhcCC
Confidence 344556799999999999999999999999999999999865333333333333333444444444
No 31
>2aqe_A Transcriptional adaptor 2, ADA2 alpha; helix-turn-helix; NMR {Mus musculus} SCOP: a.4.1.18 PDB: 2aqf_A
Probab=26.58 E-value=52 Score=29.64 Aligned_cols=40 Identities=15% Similarity=0.212 Sum_probs=32.6
Q ss_pred HHHHhhhhhccCChhhHHHHHHHHHHHHHHHHhhcCCCChHhHH
Q 002279 489 SFLQSLCEELHFDPQKASEIHEEIYRQKLQQCVADGELNDEDVA 532 (943)
Q Consensus 489 ~~LQ~lc~~L~Fdpe~A~~iheeIYr~kL~q~Vsd~~Ltdedv~ 532 (943)
.-++.||..||+.|..=..+++.+.++. ...|.|+..|+.
T Consensus 25 ~~E~~LC~~lrL~P~~YL~~K~~li~E~----~~~g~l~k~da~ 64 (90)
T 2aqe_A 25 EKEKELCQVVRLVPGAYLEYKSALLNEC----HKQGGLRLAQAR 64 (90)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHH----HHHSCCCHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHH----HHcCCCcHHHHH
Confidence 3588999999999999999999999766 345778766553
No 32
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=25.36 E-value=19 Score=32.64 Aligned_cols=49 Identities=16% Similarity=0.272 Sum_probs=35.2
Q ss_pred HhhhhhcCCCCCCCCCHH-HHHHHHHhhcccchhhhhhHHHHHHHHHHhhc
Q 002279 144 RLHDYVTDCNDPGAVKRE-DIEAIASKYGVSKQDEAFNAELSEIYCRFVTS 193 (943)
Q Consensus 144 ~LhN~~~~~~Dp~~l~~e-~v~ai~~kyGvs~~~~~~~~el~~lY~~~~~s 193 (943)
.||+.|..++-...|+++ --..|+.++|++.. ......|+.+|.+||..
T Consensus 48 ~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~-~~~~~~lk~~Y~k~L~~ 97 (107)
T 2lm1_A 48 TLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSS-KSVGATLKAHYERILHP 97 (107)
T ss_dssp HHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCC-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCC-CcHHHHHHHHHHHHhHH
Confidence 356666666666556544 56788899999875 44566899999999864
No 33
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=25.14 E-value=42 Score=29.26 Aligned_cols=126 Identities=13% Similarity=0.184 Sum_probs=69.8
Q ss_pred CcchHHHHHHHHHHHHh--ccceeeccccccccccccchHHHh-hhhhhcccCCChHHHHHHHHhHHHHHHHHHHHHHhh
Q 002279 708 PERDRTDLYKTYLLYCL--TGEVTKIPFGASITTKKDDSEYVL-LSQLGGILGLTTKEIVDVHRGLAEQAFRQQAEVILA 784 (943)
Q Consensus 708 ~~rdr~dLYr~YL~~Cl--sGe~~~~p~G~~i~~~kdqsEf~~-LnQLg~ILGL~~kEi~~VH~~laeqAyrqqaeqiL~ 784 (943)
++..+.++.+.|-.+.- +|.++ -.||.. |..||. .++..|+..+-.. +
T Consensus 2 s~~~~~~l~~~F~~~D~d~~G~i~-------------~~el~~~l~~~g~--~~~~~~~~~~~~~--------------~ 52 (143)
T 3j04_B 2 DQSQIQEFKEAFNMIDQNRDGFID-------------KEDLHDMLASMGK--NPTDEYLEGMMSE--------------A 52 (143)
T ss_dssp CHHHHHHHHHHHTTTCSSCTTCCC-------------HHHHHHHHHHTSC--CCCHHHHHTTTTT--------------S
T ss_pred CHHHHHHHHHHHHHhCCCCCCCcC-------------HHHHHHHHHHhCC--CCCHHHHHHHHHh--------------C
Confidence 45566777777766666 55444 455443 455543 4566666555443 7
Q ss_pred cCCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHH------cCCCCHHHHHHHHH-cccchhhhccHH
Q 002279 785 DGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVA------QGKLNIKQIRELKE-ASVDLDNMISES 857 (943)
Q Consensus 785 dG~Lt~akae~L~eiq~qLgLp~e~AqKiIK~it~~Kms~~ie~~va------~GkL~~~~V~eLke-~gV~L~~~ised 857 (943)
+|.++-.. |+.-+...+.-+... .+ +..++. +|.||.++++.+.. .|. .++.+
T Consensus 53 ~g~i~~~e--F~~~~~~~~~~~~~~----------~~----l~~~F~~~D~d~~G~I~~~El~~~l~~~g~----~~~~~ 112 (143)
T 3j04_B 53 PGPINFTM--FLTMFGEKLNGTDPE----------DV----IRNAFACFDEEASGFIHEDHLRELLTTMGD----RFTDE 112 (143)
T ss_dssp SSCCCHHH--HHHHHHHTTTSSCCH----------HH----HHHHHTTSCSSSCCCCCTTTHHHHHHTSSS----CCCHH
T ss_pred CCCcCHHH--HHHHHHHHhccCCcH----------HH----HHHHHHHHCCCCCCeEcHHHHHHHHHHcCC----CCCHH
Confidence 89998763 444444333221111 11 222443 69999999998774 443 35666
Q ss_pred HHHHHHHHHHHHHHhcCCCCCchHHHHHh
Q 002279 858 LRENLFKKTVDEIFSSGTGEFDAEEVYEK 886 (943)
Q Consensus 858 ~R~~LFrK~V~e~issGtg~fD~ee~~~k 886 (943)
....||+.. =.+|.|.-+.++++.-
T Consensus 113 ~~~~~~~~~----D~d~dg~i~~~eF~~~ 137 (143)
T 3j04_B 113 EVDEMYREA----PIDKKGNFNYVEFTRI 137 (143)
T ss_dssp HHHHHHHHT----TCCSSSCCCSTHHHHH
T ss_pred HHHHHHHHc----CCCCCCcCcHHHHHHH
Confidence 666666643 2344454455555543
No 34
>1dqe_A PBP, pheromone-binding protein; helical bundle, transport protein; HET: BOM; 1.80A {Bombyx mori} SCOP: a.39.2.1 PDB: 1gm0_A 1ls8_A 2fjy_A 2p71_A* 2p70_A* 1xfr_A
Probab=24.24 E-value=3.1e+02 Score=25.54 Aligned_cols=92 Identities=10% Similarity=0.117 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHc--ccchhhhccHHHHHHHHHHHHHHHHh--cCCCCCchHHHHHh
Q 002279 811 QKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEA--SVDLDNMISESLRENLFKKTVDEIFS--SGTGEFDAEEVYEK 886 (943)
Q Consensus 811 qKiIK~it~~Kms~~ie~~va~GkL~~~~V~eLke~--gV~L~~~ised~R~~LFrK~V~e~is--sGtg~fD~ee~~~k 886 (943)
|++++.++. ++....+.+...-.+|.+++.+++.. |- ..+.+...+=|-.=+=+.+. +-.|.|+.+.+++.
T Consensus 2 ~~~~~~~~~-~~~~~~~~C~~E~gvs~e~i~~~~~~~~~~----~~~~d~~~kC~~~C~~~K~gl~d~~G~~~~d~~~~~ 76 (137)
T 1dqe_A 2 QEVMKNLSL-NFGKALDECKKEMTLTDAINEDFYNFWKEG----YEIKNRETGCAIMCLSTKLNMLDPEGNLHHGNAMEF 76 (137)
T ss_dssp HHHHHHHHH-HHHTTHHHHHHHTTCCTHHHHHHHTTTSTT----CCCCCHHHHHHHHHHHHHTTCBCTTSSBCHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHhcccc----CCCCCcccCcHHHHHHHHcCCcCCCCCCcHHHHHHH
Confidence 466777654 46677888999999999999999985 21 12334445667777777666 66789999999888
Q ss_pred cccccCCCHH---HHHHHHHHHHHH
Q 002279 887 IPADLSINAE---KARRVVHELARN 908 (943)
Q Consensus 887 ip~dL~I~~e---kAk~Iv~~~a~~ 908 (943)
++.- .=+.+ +++.++.+|...
T Consensus 77 ~~~~-~~d~~~~~~~~~ii~~C~~~ 100 (137)
T 1dqe_A 77 AKKH-GADETMAQQLIDIVHGCEKS 100 (137)
T ss_dssp HHHT-TCCHHHHHHHHHHHHHHHHH
T ss_pred HHhc-CCcHHHHHHHHHHHHHhhcc
Confidence 8544 33333 688888888764
No 35
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=23.83 E-value=37 Score=32.10 Aligned_cols=45 Identities=22% Similarity=0.332 Sum_probs=37.9
Q ss_pred HhhhhhcCCCCCCCCCH-HHHHHHHHhhcccchhhhhhHHHHHHHHHHhhc
Q 002279 144 RLHDYVTDCNDPGAVKR-EDIEAIASKYGVSKQDEAFNAELSEIYCRFVTS 193 (943)
Q Consensus 144 ~LhN~~~~~~Dp~~l~~-e~v~ai~~kyGvs~~~~~~~~el~~lY~~~~~s 193 (943)
.||+.|..++-...|++ ..-..|+.++|++. ...|+.+|.+||..
T Consensus 52 ~Ly~~V~~~GG~~~V~~~k~W~~Va~~lg~~~-----~~~Lr~~Y~k~L~~ 97 (123)
T 1kkx_A 52 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISD-----YQQLESIYFRILLP 97 (123)
T ss_dssp HHHHHHTTTSCHHHHTTSHHHHHHHHHHTCCC-----HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHhccccccHHHHHHHHCCCh-----HHHHHHHHHHHHHH
Confidence 57888888888888776 57889999999987 45899999999865
No 36
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein, EF-finger, transport protein; 2.30A {Homo sapiens} SCOP: a.39.1.5
Probab=22.86 E-value=3.6e+02 Score=26.21 Aligned_cols=140 Identities=16% Similarity=0.206 Sum_probs=74.4
Q ss_pred CCcchHHHHHHHHHHHHhccceeeccccccccccccchHHHh-hhhhhcccCCChHHHHHHHHhHHHHHHHHHHHHHhhc
Q 002279 707 LPERDRTDLYKTYLLYCLTGEVTKIPFGASITTKKDDSEYVL-LSQLGGILGLTTKEIVDVHRGLAEQAFRQQAEVILAD 785 (943)
Q Consensus 707 l~~rdr~dLYr~YL~~ClsGe~~~~p~G~~i~~~kdqsEf~~-LnQLg~ILGL~~kEi~~VH~~laeqAyrqqaeqiL~d 785 (943)
+...+...+|+.|-..|=+|.++ -.||.. |.++|. .+.+..++..+ |+.. -.=++
T Consensus 48 ~s~~ei~~l~~~Fd~~d~~G~I~-------------~~E~~~~l~~l~~-~~~~~~~~~~~--------f~~~--D~d~~ 103 (224)
T 1s1e_A 48 FTKRELQVLYRGFKNECPSGVVN-------------EETFKQIYAQFFP-HGDASTYAHYL--------FNAF--DTTQT 103 (224)
T ss_dssp CCHHHHHHHHHHHHHHCTTSCBC-------------HHHHHHHHHTTCT-TSCCHHHHHHH--------HHHH--CTTCS
T ss_pred CCHHHHHHHHHHHHhhCCCCCCC-------------HHHHHHHHHHhcC-CCCcHHHHHHH--------HHHh--cCCCC
Confidence 77888999999998877677555 555543 334432 13444444333 3321 11257
Q ss_pred CCCCHHHHH-HHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHH--HHcCCCCHHHHHHHHHc-----ccc----hhhh
Q 002279 786 GQLTKARIE-QLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETA--VAQGKLNIKQIRELKEA-----SVD----LDNM 853 (943)
Q Consensus 786 G~Lt~akae-~L~eiq~qLgLp~e~AqKiIK~it~~Kms~~ie~~--va~GkL~~~~V~eLke~-----gV~----L~~~ 853 (943)
|.++-...- .+..+.. +.+.+ ++......+ =.+|.|+.++.+.+... |.. +...
T Consensus 104 G~I~~~Ef~~~l~~~~~--~~~~~------------~l~~~F~~~D~d~dG~Is~~E~~~~l~~~~~~~g~~~~~~~~~~ 169 (224)
T 1s1e_A 104 GSVKFEDFVTALSILLR--GTVHE------------KLRWTFNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKED 169 (224)
T ss_dssp SCBCHHHHHHHHHHHHH--CCHHH------------HHHHHHHHHCTTCCSEECHHHHHHHHHHHHHHHTTCCCGGGCSS
T ss_pred CcEeHHHHHHHHHHHcc--CCHHH------------HHHHHHHHHcCCCCCeECHHHHHHHHHHHHHHhcccCCCCCCHh
Confidence 888876332 2222221 22222 222211111 13689999999987743 543 2222
Q ss_pred ccHHHHHHHHHHHHHHHHhcCCCCCchHHHHHhcc
Q 002279 854 ISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIP 888 (943)
Q Consensus 854 ised~R~~LFrK~V~e~issGtg~fD~ee~~~kip 888 (943)
...+....+|++. =.+|.|.-+.+|++.-+.
T Consensus 170 ~~~~~~~~~f~~~----D~d~dG~Is~~EF~~~~~ 200 (224)
T 1s1e_A 170 TPRQHVDVFFQKM----DKNKDGIVTLDEFLESCQ 200 (224)
T ss_dssp SHHHHHHHHHHHH----CTTCSSCEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHh----CCCCCCcEeHHHHHHHHH
Confidence 3345555666542 246667667777765543
No 37
>2oeq_A Protein of unknown function, DUF964; helix bundle, structural genomics, PSI-2, protein structure initiative; 2.90A {Geobacillus stearothermophilus} SCOP: a.281.1.2
Probab=22.34 E-value=3.3e+02 Score=25.12 Aligned_cols=59 Identities=10% Similarity=0.070 Sum_probs=45.0
Q ss_pred HHHHHHHHhhcCC-CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 002279 775 FRQQAEVILADGQ-LTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQG 833 (943)
Q Consensus 775 yrqqaeqiL~dG~-Lt~akae~L~eiq~qLgLp~e~AqKiIK~it~~Kms~~ie~~va~G 833 (943)
.+.++...-..|+ ++++....|+++..++..+|.-..=+-..-.-+.|.+.|...|+.+
T Consensus 51 ~q~~~q~~q~~G~~~~~e~~~~l~~l~~~l~~n~~v~~~~~Ae~~l~~ll~~I~~iI~~~ 110 (122)
T 2oeq_A 51 IQLRLHEKQMRGAAILPDEIEQAQKAMALAQQNEKLARLMALEQQMSITIAEVQQIAMKP 110 (122)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666667785 9999999999999999999987776666666677777676666554
No 38
>1s4k_A Putative cytoplasmic protein YDIL; structural genomics, MCSG, PSI, PROT structure initiative; 1.90A {Salmonella typhimurium} SCOP: a.35.1.6
Probab=22.04 E-value=49 Score=31.79 Aligned_cols=30 Identities=30% Similarity=0.487 Sum_probs=26.8
Q ss_pred HHHHHHHHhCCCcchhhHHHH-HHhhHHHHH
Q 002279 441 ALNQLRNIFGLGKRESEAIIV-DVTSKVYRK 470 (943)
Q Consensus 441 ~L~~LknifGLg~~EAe~I~~-dV~~kiYR~ 470 (943)
.|..+|.+|||.-.||+.++- +|-.+-|++
T Consensus 7 ELkalR~ilgLt~~EaA~~i~~~vs~rtWQq 37 (120)
T 1s4k_A 7 ELQALRRIFDMTIEECTIYITQDNNSATWQR 37 (120)
T ss_dssp HHHHHHHHTTCCHHHHHHHTSSSCCHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHhccCCHHHHHH
Confidence 578899999999999999886 788999987
No 39
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=22.02 E-value=3.1e+02 Score=24.28 Aligned_cols=38 Identities=13% Similarity=0.289 Sum_probs=32.7
Q ss_pred hhccCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q 002279 323 LSYRLSDALAEDLFREHTRKLVEENIVTALSILKSRTRV 361 (943)
Q Consensus 323 ~~~~LsDe~a~e~fr~~a~k~ve~~is~al~~lk~rt~~ 361 (943)
-...|.++ ++|++.+.|-..|+..++.|..+.|-|...
T Consensus 20 p~~~ld~~-vee~ll~lADdFV~~V~~~ac~lAKhR~s~ 57 (76)
T 1h3o_B 20 PNEQLDED-VEEMLLQIADDFIESVVTAACQLARHRKSS 57 (76)
T ss_dssp SSCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34556554 999999999999999999999999999865
No 40
>2nl9_A Fusion protein consisting of induced myeloid LEUK differentiation protein MCL-1 homolog...; apoptosis, MCL-1, BIM; HET: MSE; 1.55A {Rattus norvegicus} PDB: 2nla_A 3d7v_A 3io9_A 3kj0_A 2pqk_A 3kj1_A 3kj2_A 3kz0_A 3mk8_A 1wsx_A 2jm6_B 2roc_A 2rod_A 2kbw_A 3mk8_B
Probab=21.72 E-value=95 Score=30.03 Aligned_cols=117 Identities=15% Similarity=0.213 Sum_probs=0.0
Q ss_pred chHHHHHHHHHHHHhccceeeccccccccccccchHHHhhhhhhcccCCChHHHHHHHHhHHHHHHHHHHHHHhhcCCCC
Q 002279 710 RDRTDLYKTYLLYCLTGEVTKIPFGASITTKKDDSEYVLLSQLGGILGLTTKEIVDVHRGLAEQAFRQQAEVILADGQLT 789 (943)
Q Consensus 710 rdr~dLYr~YL~~ClsGe~~~~p~G~~i~~~kdqsEf~~LnQLg~ILGL~~kEi~~VH~~laeqAyrqqaeqiL~dG~Lt 789 (943)
.+...|.++|+.+|.+|--...|.| .-|....++....+.+++..=++.-..
T Consensus 6 ~~~~~L~~~yi~~~~~G~~~~~~~~--------------------~~~~~~~~~~~~Lr~i~dele~~~~~~-------- 57 (157)
T 2nl9_A 6 RQSLEIISRYLREQATGSKDSKPLG--------------------EAGAAGRRALETLRRVGDGVQRNHETA-------- 57 (157)
T ss_dssp HHHHHHHHHHHHHHHHCC-----------------------------CHHHHHHHHHHHHHHHHHHTTCHHH--------
T ss_pred HHHHHHHHHHHHHHHcCCCCcCcCC--------------------CCCCCccHHHHHHHHHHHHHHHHHHHH--------
Q ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHcccchhhhccHHHHHHHHHHHHH
Q 002279 790 KARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDLDNMISESLRENLFKKTVD 868 (943)
Q Consensus 790 ~akae~L~eiq~qLgLp~e~AqKiIK~it~~Kms~~ie~~va~GkL~~~~V~eLke~gV~L~~~ised~R~~LFrK~V~ 868 (943)
+++|++||.+++..+. ....+.+.. .+.+|.+|=.+|-.|--++..+...+....++.+.+..++
T Consensus 58 ------f~~~~~~l~i~~~~~~----~~f~~Va~e----lF~dGi~nWGRIValf~F~~~la~~~~~~~~~~~v~~i~~ 122 (157)
T 2nl9_A 58 ------FQGMLRKLDIKNEDDV----KSLSRVMIH----VFSDGVTNWGRIVTLISFGAFVAKHLKTINQESCIEPLAE 122 (157)
T ss_dssp ------HHHHHHHHCCCSTTCC----HHHHHHHHH----HGGGSCCCHHHHHHHHHHHHHHHHHHHHHCTTCCSHHHHH
T ss_pred ------HHHHHHHcCCCCchHH----HHHHHHHHH----HhcCCCCChHHHHHHHHHHHHHHHHHHHcCchhHHHHHHH
No 41
>2vof_A BCL-2-related protein A1; BH3, apoptosis, Pro-surviVal, mitochondrion, protein- complex; 1.8A {Mus musculus} PDB: 2vog_A 2voh_A* 2voi_A 3i1h_A 3mqp_A 2vm6_A
Probab=21.59 E-value=4.6e+02 Score=25.30 Aligned_cols=49 Identities=16% Similarity=0.213 Sum_probs=36.7
Q ss_pred HHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHcccch
Q 002279 794 EQLNEVQKQVGL-PSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKEASVDL 850 (943)
Q Consensus 794 e~L~eiq~qLgL-p~e~AqKiIK~it~~Kms~~ie~~va~GkL~~~~V~eLke~gV~L 850 (943)
..++.+++++++ +++.+......+ ++..+.+|.+|=.+|-.|--++..|
T Consensus 55 ~~f~~~~~~l~i~~~~~a~~~f~~V--------a~elF~dg~inWGRIVal~~F~g~l 104 (157)
T 2vof_A 55 KNLKSYLDDFHVESIDTARIIFNQV--------MEKEFEDGIINWGRIVTIFAFGGVL 104 (157)
T ss_dssp HHTHHHHTTCCCCSHHHHHHHHHHH--------HHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCcchHHHHHHHH--------HHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 357889999988 556566554332 3447899999999999999887776
No 42
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein STR and functional analyses, riken structural genomics/proteomi initiative; 2.20A {Homo sapiens} PDB: 2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A 2het_A
Probab=21.47 E-value=2.8e+02 Score=25.86 Aligned_cols=50 Identities=18% Similarity=0.264 Sum_probs=32.0
Q ss_pred hcCCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 002279 784 ADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLNIKQIRELKE 845 (943)
Q Consensus 784 ~dG~Lt~akae~L~eiq~qLgLp~e~AqKiIK~it~~Kms~~ie~~va~GkL~~~~V~eLke 845 (943)
++|.|+.+ .|.++...+|++++...++.+.+-+.. .+|+|+.++...+..
T Consensus 12 ~~g~l~~~---el~~~~~~~~~~~~~i~~~f~~~d~~~---------~~G~i~~~ef~~~l~ 61 (207)
T 2d8n_A 12 KSGALSKE---ILEELQLNTKFSEEELCSWYQSFLKDC---------PTGRITQQQFQSIYA 61 (207)
T ss_dssp CTTCCCHH---HHHHHHHHSSCCHHHHHHHHHHHHHHC---------TTSEEEHHHHHHHHH
T ss_pred cCCCCCHH---HHHHHHHHcCCCHHHHHHHHHHHHhhC---------CCCCCCHHHHHHHHH
Confidence 35666655 455666778888777777766554320 367787777777654
No 43
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Probab=21.44 E-value=4.4e+02 Score=24.01 Aligned_cols=143 Identities=15% Similarity=0.111 Sum_probs=75.1
Q ss_pred CCCCcchHHHHHHHHHHHHh--------c--cceeeccccccccccccchHHHhhhhhhcccCCChHHHHHHHHhHHHHH
Q 002279 705 DDLPERDRTDLYKTYLLYCL--------T--GEVTKIPFGASITTKKDDSEYVLLSQLGGILGLTTKEIVDVHRGLAEQA 774 (943)
Q Consensus 705 dDl~~rdr~dLYr~YL~~Cl--------s--Ge~~~~p~G~~i~~~kdqsEf~~LnQLg~ILGL~~kEi~~VH~~laeqA 774 (943)
..++..+...+++.|-.++- + |.++ -.||..|..+ |.+... ++.
T Consensus 12 ~~ls~~~~~~l~~~F~~~D~~~~~~~~~~~~G~i~-------------~~el~~l~~~----g~~~~~---------~~l 65 (183)
T 1dgu_A 12 TFLTKQEILLAHRRFCELLPQEQRSVESSLRAQVP-------------FEQILSLPEL----KANPFK---------ERI 65 (183)
T ss_dssp CSCCHHHHHHHHHHHHHHSCSTTCSSCCCTTTCSC-------------HHHHHTSTTS----SSCTTH---------HHH
T ss_pred cCCCHHHHHHHHHHHHHhCccccccccccccCcCc-------------HHHHHHHHhh----hcCcHH---------HHH
Confidence 45778889999999999987 5 6555 5666664443 444321 112
Q ss_pred HHHHHHHHhhcCC-CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHH--HHcCCCCHHHHHHHHH-cccc-
Q 002279 775 FRQQAEVILADGQ-LTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETA--VAQGKLNIKQIRELKE-ASVD- 849 (943)
Q Consensus 775 yrqqaeqiL~dG~-Lt~akae~L~eiq~qLgLp~e~AqKiIK~it~~Kms~~ie~~--va~GkL~~~~V~eLke-~gV~- 849 (943)
|+.. -.=++|. ++-. +|+.-+.....-.+. ..++..+-... =.+|.|+.++++.+.. .|..
T Consensus 66 ~~~~--D~d~~G~~I~~~--EF~~~~~~~~~~~~~----------~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~ 131 (183)
T 1dgu_A 66 CRVF--STSPAKDSLSFE--DFLDLLSVFSDTATP----------DIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEG 131 (183)
T ss_dssp HHHH--SCSSSSCCCCHH--HHHHHHHHHSTTCCH----------HHHHHHHHHHHCTTCSSEEEHHHHHHHHHHHHSSS
T ss_pred HHHh--CCCCCCCEecHH--HHHHHHHHhcCCCCH----------HHHHHHHHHHhCCCCCCcCCHHHHHHHHHHHhccc
Confidence 2211 1225788 8876 444444433322211 01121111111 1268999999998764 3320
Q ss_pred hhhhccHHHHHHHHHHHHHHHHhcCCCCCchHHHHHhc
Q 002279 850 LDNMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKI 887 (943)
Q Consensus 850 L~~~ised~R~~LFrK~V~e~issGtg~fD~ee~~~ki 887 (943)
-...++++....+.+..+...=.+|.|..+.+|++.-+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~D~d~dG~I~~~EF~~~~ 169 (183)
T 1dgu_A 132 EDTRLSASEMKQLIDNILEESDIDRDGTINLSEFQHVI 169 (183)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHCTTSSSEEEHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHH
Confidence 00124455545433344444445677777777776544
No 44
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Probab=20.49 E-value=1.9e+02 Score=26.58 Aligned_cols=131 Identities=15% Similarity=0.225 Sum_probs=0.0
Q ss_pred hhhhhcccCCChHHHHHHHHhHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHH
Q 002279 749 LSQLGGILGLTTKEIVDVHRGLAEQAFRQQAEVILADGQLTKARIEQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIET 828 (943)
Q Consensus 749 LnQLg~ILGL~~kEi~~VH~~laeqAyrqqaeqiL~dG~Lt~akae~L~eiq~qLgLp~e~AqKiIK~it~~Kms~~ie~ 828 (943)
|..+...+|++..|+..+...+-..- ++|.++.+....+-.-.-..+.+.+...++.+.+-+.+
T Consensus 13 l~~~~~~~~~~~~el~~~f~~~D~~~---------~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~d~------- 76 (190)
T 2l2e_A 13 LQDLVRSTRFDKKELQQWYKGFFKDC---------PSGHLNKSEFQKIYKQFFPFGDPSAFAEYVFNVFDADK------- 76 (190)
T ss_dssp HHHHHHHHCSCSHHHHHHHHHHHHHS---------CCCEECHHHHHHHHHHHCCCSCHHHHHHHHHHHHCSSS-------
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhC---------CCCcCCHHHHHHHHHHhCCCCCccHHHHHHHHHhcCCC-------
Q ss_pred HHHcCCCCHHHHHHHHHcccchhhhccHHHHHHHHHHHHHHHHhcCCCCCchHHHHHhccc-------------ccCCCH
Q 002279 829 AVAQGKLNIKQIRELKEASVDLDNMISESLRENLFKKTVDEIFSSGTGEFDAEEVYEKIPA-------------DLSINA 895 (943)
Q Consensus 829 ~va~GkL~~~~V~eLke~gV~L~~~ised~R~~LFrK~V~e~issGtg~fD~ee~~~kip~-------------dL~I~~ 895 (943)
+|+|+.++...+.. .+.......-.+......=.+|.|.-+.+|+..-+.. .-.++.
T Consensus 77 ---~G~i~~~ef~~~~~-------~~~~~~~~~~~~~~f~~~D~d~~G~i~~~e~~~~~~~~~~~~g~~~~~~~~~~~~~ 146 (190)
T 2l2e_A 77 ---NGYIDFKEFICALS-------VTSRGELNDKLIWAFQLYDLDNNGLISYDEMLRIVDAIYKMVGSMVKLPEDEDTPE 146 (190)
T ss_dssp ---TTCEEHHHHHHHHT-------TSSCSCSHHHHHHHHHHHCTTSCSCBCHHHHHHHHHHHHHHHHHHSCCCSSCCCTH
T ss_pred ---CCeEeHHHHHHHHH-------HHcCCCHHHHHHHHHhHccCCCCCcCcHHHHHHHHHHHHHHhccccCcccccccHH
Q ss_pred HHHHHHHHHH
Q 002279 896 EKARRVVHEL 905 (943)
Q Consensus 896 ekAk~Iv~~~ 905 (943)
+.+..++..+
T Consensus 147 ~~~~~~f~~~ 156 (190)
T 2l2e_A 147 KRVNKIFNMM 156 (190)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
No 45
>3tl4_X Glutaminyl-tRNA synthetase; glutamine, appended domain, hinge, tRNA LIG amidotransferase, ligase; 2.30A {Saccharomyces cerevisiae}
Probab=20.20 E-value=2.8e+02 Score=28.11 Aligned_cols=128 Identities=16% Similarity=0.213 Sum_probs=75.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCCC---HHHHHHHH-HcccchhhhccHHHHHHHHHHHHHH
Q 002279 794 EQLNEVQKQVGLPSEYAQKIIKNITTTKMAAAIETAVAQGKLN---IKQIRELK-EASVDLDNMISESLRENLFKKTVDE 869 (943)
Q Consensus 794 e~L~eiq~qLgLp~e~AqKiIK~it~~Kms~~ie~~va~GkL~---~~~V~eLk-e~gV~L~~~ised~R~~LFrK~V~e 869 (943)
+-|-++-..+||+...|.+.+|| .|+++.+..+|..-..+ ++.+.-|. ..-..+-.. ..+ -|..|-+
T Consensus 5 ~~l~~lf~~iGL~e~kaket~kN---~kls~~L~~~i~ea~~~~~~dk~~g~LLy~latk~k~~-~~~-----~r~~l~~ 75 (187)
T 3tl4_X 5 EELTQLFSQVGFEDKKVKEIVKN---KKVSDSLYKLIKETPSDYQWNKSTRALVHNLASFVKGT-DLP-----KSELIVN 75 (187)
T ss_dssp HHHHHHHHHTTCCHHHHHHHTTS---HHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHTTC-CCT-----THHHHHH
T ss_pred HHHHHHHHHcCCChhHHHHHHhC---HHHHHHHHHHHHHccccCCCCHHHHHHHHHHHHhccCc-cch-----hHHHHHH
Confidence 56778889999999999998876 56666777777643222 23333332 222211000 001 1222333
Q ss_pred HHhcC------------------CCCCchHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHH
Q 002279 870 IFSSG------------------TGEFDAEEVYEKIPADLSINAEKARRVVHELARNRLSNSLIQAVSLLRQKNRQGVLC 931 (943)
Q Consensus 870 ~issG------------------tg~fD~ee~~~kip~dL~I~~ekAk~Iv~~~a~~R~~n~LvQAVa~LRQrk~~~vv~ 931 (943)
.|.+| .+++|.++|-+.-=-+..+++|..+..|.+.+.+.+...+. -|=+++...+.
T Consensus 76 ~I~~gklkt~~Qv~AAl~yl~~~~~~id~~~Fe~~cGVGV~VT~EqI~~~V~~~i~~~k~~i~~-----~RY~~~g~ll~ 150 (187)
T 3tl4_X 76 GIINGDLKTSLQVDAAFKYVKANGEASTKMGMNENSGVGIEITEDQVRNYVMQYIQENKERILT-----ERYKLVPGIFA 150 (187)
T ss_dssp HHHTTSCCSHHHHHHHHHHHHHHGGGCCHHHHHHTTTTTCCCCHHHHHHHHHHHHHHTHHHHHH-----HGGGGHHHHHH
T ss_pred HHHhccCCcHHHHHHHHHHHHhCCCCCCHHHHHHHCCCCeEeCHHHHHHHHHHHHHHhHHHHHH-----hccccHHHHHH
Confidence 33333 34566677777777778899999999999998765554333 24445566666
Q ss_pred HHHh
Q 002279 932 QLSR 935 (943)
Q Consensus 932 sl~n 935 (943)
.+++
T Consensus 151 ~vr~ 154 (187)
T 3tl4_X 151 DVKN 154 (187)
T ss_dssp HHHT
T ss_pred HHhc
Confidence 5555
Done!