BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002280
(943 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P90727|U2AF2_CAEBR Splicing factor U2AF 65 kDa subunit OS=Caenorhabditis briggsae
GN=uaf-1 PE=3 SV=2
Length = 488
Score = 130 bits (327), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 103/342 (30%), Positives = 166/342 (48%), Gaps = 59/342 (17%)
Query: 384 RSPEKKSAKWDVAPVETYSVPSNVHTSNQAASSNAHEMVSSDPVTSTTQKPLAGISVSAS 443
R P KK WDV P ++ + + QA+ + V S P+ G SV+
Sbjct: 122 REP-KKYRFWDVPPTGFENITPMEYKNMQASGAVPRGSVQS-------AVPVVGPSVTC- 172
Query: 444 LAKLNVSMDSVQLTQSNRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCI 503
QS RRL V N+P +E+A+++F N + + G+ P +
Sbjct: 173 --------------QS----RRLYVGNIPFGCNEEAMLDFFNQQMHLCNLAQAPGN-PIL 213
Query: 504 GCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSILKIKRPKEF--------------- 548
C I +K AF+EF + ++ +A + DG +F G LK++RP+++
Sbjct: 214 LCQINLDKNFAFIEFRSIDETTAGMAFDGINFMGQQLKVRRPRDYQPSQNTFDMNARMPV 273
Query: 549 ----VEVA--IFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN-EDHEEPCAFIEYVDQL 601
V+ A IFIGG+ L+ V E++C+FGPLKA+ V+ + + + AF EY+D
Sbjct: 274 SSIVVDSANKIFIGGLPNYLTEDQVKELLCSFGPLKAFSLNVDSQGNSKGYAFAEYLDPT 333
Query: 602 VTPKAIAGLNGLKVGGQVLTAVQAVLDGSIMDNSGNP----PFHGIPKHALPLLKKPTEV 657
+T +AIAGLNG+++G + L VQ N+ P GI + TE+
Sbjct: 334 LTDQAIAGLNGMQLGDKQLV-VQLACANQTRHNTHLPNSASAIAGIDLSQGA--GRATEI 390
Query: 658 LKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNV 699
L L N+ + S+ + EE+LEDVR EC+++G V+S+ +
Sbjct: 391 LCLMNMVTEDELR--SDEDYEEILEDVREECSKYGIVRSLEI 430
>sp|Q24562|U2AF2_DROME Splicing factor U2AF 50 kDa subunit OS=Drosophila melanogaster
GN=U2af50 PE=2 SV=1
Length = 416
Score = 124 bits (311), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 96/351 (27%), Positives = 156/351 (44%), Gaps = 69/351 (19%)
Query: 388 KKSAKWDVAPVETYSVPSNVHTSNQAASSNAHEMVSSDPVTSTTQKPLAGISVSASLAKL 447
K S WDV P + + + QA+ +V P T+ P+ G +++
Sbjct: 39 KPSLYWDVPPPGFEHITPMQYKAMQASGQIPASVVPDTPQTAV---PVVGSTIT------ 89
Query: 448 NVSMDSVQLTQSNRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVI 507
R RRL V N+P +E+ +MEF N + G+ GS P + C I
Sbjct: 90 -------------RQARRLYVGNIPFGVTEEEMMEFFNQQMHLVGLAQAAGS-PVLACQI 135
Query: 508 QREKGQAFVEFLTAEDASAALCCDGCSFSGSILKIKRPKEFVEVA--------------- 552
+K AF+EF + ++ + A+ DG + G LKI+RP ++ +
Sbjct: 136 NLDKNFAFLEFRSIDETTQAMAFDGINLKGQSLKIRRPHDYQPMPGITDTPAIKPAVVSS 195
Query: 553 -------------IFIGGISRTLSSKMVMEIVCAFGPLKAYHF--EVNEDHEEPCAFIEY 597
IFIGG+ L+ V E++ +FG L+A++ + + AF EY
Sbjct: 196 GVISTVVPDSPHKIFIGGLPNYLNDDQVKELLLSFGKLRAFNLVKDAATGLSKGYAFCEY 255
Query: 598 VDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGSIMDNSGN---------PPFHGIPKHAL 648
VD +T ++IAGLNG+++G + L +A + N+ N P +
Sbjct: 256 VDLSITDQSIAGLNGMQLGDKKLIVQRASVGAKNAQNAANTTQSVMLQVPGLSNVVTSG- 314
Query: 649 PLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNV 699
PTEVL L N+ P+ E E E++LED++ EC ++G V+SV +
Sbjct: 315 ----PPTEVLCLLNMVTPDELR--DEEEYEDILEDIKEECTKYGVVRSVEI 359
>sp|P26368|U2AF2_HUMAN Splicing factor U2AF 65 kDa subunit OS=Homo sapiens GN=U2AF2 PE=1
SV=4
Length = 475
Score = 120 bits (302), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 106/359 (29%), Positives = 167/359 (46%), Gaps = 59/359 (16%)
Query: 380 SPINRSPEKKSAKWDVAPVETYSVPSNVHTSNQAASSNAHEMVSSDPVTSTTQKPLAGIS 439
SP + +K WDV P + + + QAA Q P +
Sbjct: 79 SPRHEKKKKVRKYWDVPPPGFEHITPMQYKAMQAAG----------------QIPATALL 122
Query: 440 VSASLAKLNVSMDSVQL--TQSNRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVH 497
+ + L V+ V + +Q R RRL V N+P +E+A+M+F N + G+
Sbjct: 123 PTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAP 182
Query: 498 GSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSILKIKRPKEFVEVA----- 552
G+ P + I ++K AF+EF + ++ + A+ DG F G LKI+RP ++ +
Sbjct: 183 GN-PVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSEN 241
Query: 553 -------------------IFIGGISRTLSSKMVMEIVCAFGPLKAYHF--EVNEDHEEP 591
+FIGG+ L+ V E++ +FGPLKA++ + +
Sbjct: 242 PSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKG 301
Query: 592 CAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGSIMDNSGNPP-----------F 640
AF EYVD VT +AIAGLNG+++G + L VQ G+ +PP
Sbjct: 302 YAFCEYVDINVTDQAIAGLNGMQLGDKKLL-VQRASVGAKNATLVSPPSTINQTPVTLQV 360
Query: 641 HGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNV 699
G+ + + PTEVL L N+ PE L + E EE++EDVR EC+++G VKS+ +
Sbjct: 361 PGLMSSQVQMGGHPTEVLCLMNMVLPE--ELLDDEEYEEIVEDVRDECSKYGLVKSIEI 417
>sp|P26369|U2AF2_MOUSE Splicing factor U2AF 65 kDa subunit OS=Mus musculus GN=U2af2 PE=1
SV=3
Length = 475
Score = 120 bits (302), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 104/358 (29%), Positives = 164/358 (45%), Gaps = 57/358 (15%)
Query: 380 SPINRSPEKKSAKWDVAPVETYSVPSNVHTSNQAASSNAHEMVSSDPVTSTTQKPLAGIS 439
SP + +K WDV P + + + QAA Q P +
Sbjct: 79 SPRHEKKKKVRKYWDVPPPGFEHITPMQYKAMQAAG----------------QIPATALL 122
Query: 440 VSASLAKLNVSMDSVQL--TQSNRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVH 497
+ + L V+ V + +Q R RRL V N+P +E+A+M+F N + G+
Sbjct: 123 PTMTPDGLAVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAP 182
Query: 498 GSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSILKIKRPKEFVEVA----- 552
G+ P + I ++K AF+EF + ++ + A+ DG F G LKI+RP ++ +
Sbjct: 183 GN-PVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSEN 241
Query: 553 -------------------IFIGGISRTLSSKMVMEIVCAFGPLKAYHF--EVNEDHEEP 591
+FIGG+ L+ V E++ +FGPLKA++ + +
Sbjct: 242 PSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKG 301
Query: 592 CAFIEYVDQLVTPKAIAGLNGLKVGGQVLT----------AVQAVLDGSIMDNSGNPPFH 641
AF EYVD VT +AIAGLNG+++G + L A L +I
Sbjct: 302 YAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAKNATLVSLPSTINQTPVTLQVP 361
Query: 642 GIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNV 699
G+ + + PTEVL L N+ PE L + E EE++EDVR EC+++G VKS+ +
Sbjct: 362 GLMSSQVQMGGHPTEVLCLMNMVLPE--ELLDDEEYEEIVEDVRDECSKYGLVKSIEI 417
>sp|Q9ZR40|U2A2B_NICPL Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia
GN=U2AF65B PE=2 SV=1
Length = 573
Score = 99.0 bits (245), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 96/359 (26%), Positives = 154/359 (42%), Gaps = 74/359 (20%)
Query: 393 WDVAPVETYSVPSNVHTSNQAASSNAHEMVSSDPVTSTTQKPLAGISVSASLAKLNVSMD 452
+D+AP + +P + Q +N P PLA S L V
Sbjct: 177 FDMAPPTSAMLPGITAAAGQVPGTN-----PPIPGMFPNMFPLA----SGQFGALPVMPI 227
Query: 453 SVQLTQSNRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKG 512
Q+ R RR+ V LP A+E+++ F ++ + + G + I EK
Sbjct: 228 QAMTQQATRHARRVYVGGLPAHANEQSVATFFSHVMSAIGGNTAGPGDAVVNVYINYEKK 287
Query: 513 QAFVEFLTAEDASAALCCDGCSFSGSILKIKRPKEF----------------VEVA---- 552
AFVE + E+AS A+ DG F G+ K++RP ++ + +A
Sbjct: 288 FAFVEMRSVEEASNAMALDGIIFEGAPCKVRRPSDYNPSLAATLGPSQPNPNLNLAAVGL 347
Query: 553 -------------IFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHE----EPCAFI 595
IF+GG+ + + E++ +FGPL+ F++ +D E + AF
Sbjct: 348 SPGSAGGLEGPDRIFVGGLPYYFTEAQIRELLESFGPLRG--FDLVKDRETGNSKGYAFC 405
Query: 596 EYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGSIMDNSGN----PPFHGIPKHALP-- 649
Y D VT A A LNG+K+G + LT +A N G P + HA
Sbjct: 406 VYQDVSVTDIACAALNGIKMGDKTLTVRRA--------NQGTTQPKPEQESVLLHAQQQI 457
Query: 650 ----LLKKP----TEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVV 700
L+ +P T+VL L V + + + + + +++LED+R EC +FGS+ VNVV
Sbjct: 458 ALQRLMLQPATLATKVLSLTEVISADELN--DDEDYQDILEDMRTECGKFGSL--VNVV 512
>sp|Q9ZR39|U2A2A_NICPL Splicing factor U2af large subunit A OS=Nicotiana plumbaginifolia
GN=U2AF65A PE=2 SV=1
Length = 555
Score = 95.5 bits (236), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 90/359 (25%), Positives = 155/359 (43%), Gaps = 74/359 (20%)
Query: 393 WDVAPVETYSVPSNVHTSNQAASSNAHEMVSSDPVTSTTQKPLAGISVSASLAKLNVSMD 452
+D+AP T +P + Q +N + P + PLA S+ L +
Sbjct: 159 FDMAPPTTALLPGATDAAGQVPGTN-----PAIPGLFSNMFPLA----SSQFGALPMMPV 209
Query: 453 SVQLTQSNRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKG 512
Q+ R RR+ V LP +A+E+++ F ++ + + G + I EK
Sbjct: 210 QAMTQQATRHARRVYVGGLPPTANEQSVATFFSHVMYAIGGNTAGPGDAVVNVYINHEKK 269
Query: 513 QAFVEFLTAEDASAALCCDGCSFSGSILKIKRPKEF----------------VEVA---- 552
AFVE + E+AS A+ DG F G +K++RP ++ + +A
Sbjct: 270 FAFVEMRSVEEASNAMALDGVIFEGGPVKVRRPSDYNPSLAATLGPSQPSPNLNLAAVGS 329
Query: 553 -------------IFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHE----EPCAFI 595
IF+GG+ + + E++ +FG L+ F++ +D E + AF
Sbjct: 330 TPGSSGGLEGPDRIFVGGLPYYFTESQIRELLESFGQLRG--FDLVKDRETGNSKGYAFC 387
Query: 596 EYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGSIMDNSGNPPFHGIPKHALPLLKKPT 655
Y D VT A A LNG+K+G + LT V+ G+ N P+ LL
Sbjct: 388 VYQDVSVTDIACAALNGIKMGDKTLT-VRRANQGTTQPN---------PEQESVLLHAQQ 437
Query: 656 EVLKLKNVFNPEGFSS----LSEL----------EVEEVLEDVRLECARFGSVKSVNVV 700
++ + + P ++ L+E+ + +++LED+R EC +FG++ VNVV
Sbjct: 438 QIALQRFMLQPGALATKVLCLTEVVTVDELNDDDDYQDILEDMRTECEKFGAL--VNVV 494
>sp|Q2QKB4|U2A2B_WHEAT Splicing factor U2af large subunit B OS=Triticum aestivum
GN=U2AF65B PE=2 SV=1
Length = 543
Score = 87.4 bits (215), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 78/293 (26%), Positives = 130/293 (44%), Gaps = 63/293 (21%)
Query: 458 QSNRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVE 517
Q+ R RR+ V LP SA+E+++ + N + + G + I +K AFVE
Sbjct: 201 QATRHARRVYVGGLPPSANEQSVAIYFNQVMAAIGGNTAGPGDAVLNVYINHDKKFAFVE 260
Query: 518 FLTAEDASAALCCDGCSFSGSILKIKRPKEF----------------VEVA--------- 552
+ E+AS A+ DG F G+ +K++RP ++ + +A
Sbjct: 261 MRSVEEASNAMALDGILFEGAPVKVRRPTDYNPSLAAALGPSQPSSNLNLAAVGLTPGSA 320
Query: 553 --------IFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHE----EPCAFIEYVDQ 600
IF+GG+ + V E++ +FGPL+ F++ +D E + AF Y D
Sbjct: 321 GGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRG--FDLVKDRETGNSKGYAFCVYQDL 378
Query: 601 LVTPKAIAGLNGLKVGGQVLTAVQAVLDGSIMDNSGN----PPFHGI----------PKH 646
VT A A LNG+K+G + LT +A N G+ P I K
Sbjct: 379 NVTDIACAALNGIKMGDKTLTVRRA--------NQGSAQPRPEQENILLQAQQQVQLQKL 430
Query: 647 ALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNV 699
+ PT+V+ L V + + E E+++ED+RLE ++G++ V +
Sbjct: 431 VYQVGALPTKVVCLTQVVTADELK--DDEEYEDIMEDMRLEAGKYGNLVKVVI 481
>sp|Q8L716|U2A2B_ARATH Splicing factor U2af large subunit B OS=Arabidopsis thaliana
GN=U2AF65B PE=2 SV=2
Length = 589
Score = 87.0 bits (214), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 81/308 (26%), Positives = 134/308 (43%), Gaps = 65/308 (21%)
Query: 444 LAKLNVSMDSVQLTQSNRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCI 503
L L V Q+ R RR+ V LP +A+E+++ F + + + G +
Sbjct: 235 LGALPVLPVQAMTQQATRHARRVYVGGLPPTANEQSVSTFFSQVMSAIGGNTAGPGDAVV 294
Query: 504 GCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSILKIKRPKEF--------------- 548
I EK AFVE + E+AS A+ DG G +K++RP ++
Sbjct: 295 NVYINHEKKFAFVEMRSVEEASNAMALDGIILEGVPVKVRRPTDYNPSLAATLGPSQPNP 354
Query: 549 ------VEVA------------IFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHE- 589
V ++ IF+GG+ + + E++ +FGPL+ F + +D E
Sbjct: 355 NLNLGAVGLSSGSTGGLEGPDRIFVGGLPYYFTEVQIRELLESFGPLRG--FNLVKDRET 412
Query: 590 ---EPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGSIMDNSGNPPFHGIPKH 646
+ AF Y D VT A A LNG+K+G + LT V+ + G+I P+
Sbjct: 413 GNSKGYAFCVYQDPSVTDIACAALNGIKMGDKTLT-VRRAIQGAIQPK---------PEQ 462
Query: 647 ALPLLKKPTEVLKLKNVFNPEGFSS----LSEL----------EVEEVLEDVRLECARFG 692
LL ++ + +F P G + L+++ E E++ED+R E +FG
Sbjct: 463 EEVLLYAQQQIALQRLMFQPGGTPTKIVCLTQVVTADDLRDDEEYAEIMEDMRQEGGKFG 522
Query: 693 SVKSVNVV 700
++ VNVV
Sbjct: 523 NL--VNVV 528
>sp|O23212|U2A2A_ARATH Splicing factor U2af large subunit A OS=Arabidopsis thaliana
GN=U2AF65A PE=2 SV=2
Length = 573
Score = 84.3 bits (207), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 74/313 (23%), Positives = 135/313 (43%), Gaps = 63/313 (20%)
Query: 438 ISVSASLAKLNVSMDSVQLTQSNRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVH 497
+ S L++ Q+ R RR+ V L +A+E+++ F + + + G
Sbjct: 213 LPTGQSFGGLSMMPIQAMTQQATRHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAG 272
Query: 498 GSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSILKIKRPKEF--------- 548
+ I EK AFVE + E+AS A+ DG F G+ +K++RP ++
Sbjct: 273 PGDAVVNVYINHEKKFAFVEMRSVEEASNAMSLDGIIFEGAPVKVRRPSDYNPSLAATLG 332
Query: 549 -------VEVA-----------------IFIGGISRTLSSKMVMEIVCAFGPLKAYHFEV 584
+ +A IF+GG+ + V E++ +FG LK F++
Sbjct: 333 PSQPSPHLNLAAVGLTPGASGGLEGPDRIFVGGLPYYFTESQVRELLESFGGLKG--FDL 390
Query: 585 NEDHE----EPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGSIMDNSGNPPF 640
+D E + AF Y D VT A A LNG+K+G + LT V+ G+++
Sbjct: 391 VKDRETGNSKGYAFCVYQDLSVTDIACAALNGIKMGDKTLT-VRRANQGTMLQK------ 443
Query: 641 HGIPKHALPLLKKPTEVLKLKNVFNPEGFSS----LSEL----------EVEEVLEDVRL 686
P+ LL ++ + + P ++ L+++ E +++ED+R
Sbjct: 444 ---PEQENVLLHAQQQIAFQRVMLQPGAVATTVVCLTQVVTEDELRDDEEYGDIMEDMRQ 500
Query: 687 ECARFGSVKSVNV 699
E +FG++ +V +
Sbjct: 501 EGGKFGALTNVVI 513
>sp|Q2QKB3|U2A2A_WHEAT Splicing factor U2af large subunit A OS=Triticum aestivum
GN=U2AF65A PE=2 SV=1
Length = 591
Score = 83.2 bits (204), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 58/205 (28%), Positives = 93/205 (45%), Gaps = 39/205 (19%)
Query: 458 QSNRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVE 517
Q+ R RR+ V LP A+E+ + F N + + G + I +K AFVE
Sbjct: 266 QATRHARRVYVGGLPPIANEQTVAVFFNQVMAAIGGNTFALGHAVVNVYINHDKKFAFVE 325
Query: 518 FLTAEDASAALCCDGCSFSGSILKIKRPKEF----------------VEVA--------- 552
+ E+AS A+ DG F G+ +K++RP ++ + +A
Sbjct: 326 MRSVEEASNAMALDGIMFEGAPVKVRRPTDYNPSQAAALGPSQPNPNLNLAAVGLTPGAG 385
Query: 553 --------IFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHE----EPCAFIEYVDQ 600
IF+GG+ + V E++ FGPL+ F++ +D E + AF Y D
Sbjct: 386 GGLEGPDRIFVGGLPYYFTEAQVRELLETFGPLRG--FDIVKDKETGNSKGYAFCLYKDG 443
Query: 601 LVTPKAIAGLNGLKVGGQVLTAVQA 625
VT A A LNG+++G + LT +A
Sbjct: 444 TVTDIACAALNGIQLGDRTLTVRRA 468
>sp|Q2QZL4|U2A2B_ORYSJ Splicing factor U2af large subunit B OS=Oryza sativa subsp.
japonica GN=U2AF65B PE=2 SV=2
Length = 548
Score = 80.9 bits (198), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 78/291 (26%), Positives = 131/291 (45%), Gaps = 59/291 (20%)
Query: 458 QSNRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVE 517
Q+ R RR+ V LP +A+E+++ + N + + G + I +K AFVE
Sbjct: 208 QATRHARRVYVGGLPPTANEQSVAIYFNQVMAAIGGNTAGPGDAVLNVYINHDKKFAFVE 267
Query: 518 FLTAEDASAALCCDGCSFSGSILKIKRPKEF----------------VEVA--------- 552
+ E+AS A+ DG F G+ +K++RP ++ + +A
Sbjct: 268 MRSVEEASNAMALDGILFEGAPVKVRRPTDYNPSLAAALGPSQPSPNLNLAAVGLTPGSA 327
Query: 553 --------IFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHE----EPCAFIEYVDQ 600
IF+GG+ + V E++ +FGPL+ F++ +D E + AF Y D
Sbjct: 328 GGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRG--FDLVKDRETGNSKGYAFCVYQDL 385
Query: 601 LVTPKAIAGLNGLKVGGQVLTAVQAVLDG--------SIMDNSGNPPFHGIPKHALPLLK 652
VT A A LNG+K+G + LT +A SI+ + + + L
Sbjct: 386 NVTDIACAALNGIKMGDKTLTVRRANQGAAQPRPEQESILLQAQQQVQLQKLVYQVGAL- 444
Query: 653 KPTEVLKLKNVFNPEGFSSLSEL----EVEEVLEDVRLECARFGSVKSVNV 699
PT+V+ L V S EL E E+++ED+RLE ++G++ V +
Sbjct: 445 -PTKVVCLTQVV------SADELKDDEEYEDIMEDMRLEAGKYGNLIKVVI 488
>sp|Q2R0Q1|U2A2A_ORYSJ Splicing factor U2af large subunit A OS=Oryza sativa subsp.
japonica GN=U2AF65A PE=2 SV=2
Length = 574
Score = 80.9 bits (198), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 129/289 (44%), Gaps = 53/289 (18%)
Query: 458 QSNRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVE 517
Q+ R RR+ V LP +A+E + + N + + G + I +K AFVE
Sbjct: 232 QATRHARRVYVGGLPPTANEHTVAVYFNQVMAAVGGNTAGPGDAVLNVYINHDKKFAFVE 291
Query: 518 FLTAEDASAALCCDGCSFSGSILKIKRPKEF----------------VEVA--------- 552
+ E+AS A+ DG F G+ +K++RP ++ + +A
Sbjct: 292 MRSVEEASNAMALDGIMFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLAAVGLTPGSA 351
Query: 553 --------IFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHE----EPCAFIEYVDQ 600
IF+GG+ + V E++ +FGPL+ F++ +D E + AF Y D
Sbjct: 352 GGLEGPDRIFVGGLPYYFTEAQVRELLESFGPLRG--FDLVKDRETGNSKGYAFCVYQDL 409
Query: 601 LVTPKAIAGLNGLKVGGQVLTAVQAVLDGSIMDNSGNPPFHGIPKHALPLLKK------- 653
VT A A LNG+K+G + LT +A S + + A ++K
Sbjct: 410 NVTDIACAALNGIKMGDKTLTVRRANQGASQPRPEQESMLLHVQQQA--QMQKLMFQVGG 467
Query: 654 ---PTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNV 699
PT+V+ L V +P+ + E E++++D+R E R+G++ V +
Sbjct: 468 GALPTKVVCLTQVVSPDELR--DDEEYEDIVQDMREEGCRYGNLVKVVI 514
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.127 0.353
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 350,616,104
Number of Sequences: 539616
Number of extensions: 15412202
Number of successful extensions: 66275
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 1691
Number of HSP's that attempted gapping in prelim test: 50383
Number of HSP's gapped (non-prelim): 8517
length of query: 943
length of database: 191,569,459
effective HSP length: 127
effective length of query: 816
effective length of database: 123,038,227
effective search space: 100399193232
effective search space used: 100399193232
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 66 (30.0 bits)