Query 002280
Match_columns 943
No_of_seqs 533 out of 3052
Neff 6.7
Searched_HMMs 46136
Date Thu Mar 28 20:32:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002280.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002280hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01642 U2AF_lg U2 snRNP aux 100.0 1.9E-51 4.2E-56 486.9 39.9 285 457-743 169-499 (509)
2 KOG0120 Splicing factor U2AF, 100.0 2.9E-45 6.2E-50 415.3 24.8 301 386-702 112-444 (500)
3 KOG0147 Transcriptional coacti 100.0 5.4E-45 1.2E-49 406.7 17.5 329 561-943 190-536 (549)
4 TIGR01622 SF-CC1 splicing fact 100.0 8.9E-41 1.9E-45 390.8 34.5 273 461-744 87-446 (457)
5 TIGR01622 SF-CC1 splicing fact 100.0 3E-36 6.4E-41 352.7 32.5 337 552-942 91-455 (457)
6 TIGR01628 PABP-1234 polyadenyl 100.0 9E-36 2E-40 357.4 31.0 245 465-743 2-258 (562)
7 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 5.1E-35 1.1E-39 330.7 28.3 265 463-745 3-348 (352)
8 TIGR01645 half-pint poly-U bin 100.0 1.3E-34 2.7E-39 339.9 29.3 164 458-627 102-283 (612)
9 TIGR01642 U2AF_lg U2 snRNP aux 100.0 1.3E-33 2.7E-38 334.9 32.7 177 552-745 177-374 (509)
10 KOG0147 Transcriptional coacti 100.0 1.4E-34 3E-39 323.5 19.7 272 460-743 176-525 (549)
11 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 5.8E-32 1.3E-36 318.0 36.8 254 462-744 1-349 (481)
12 TIGR01645 half-pint poly-U bin 100.0 2.6E-31 5.6E-36 312.1 26.2 172 552-745 109-283 (612)
13 KOG0145 RNA-binding protein EL 100.0 4.5E-31 9.8E-36 269.8 23.1 265 462-744 40-356 (360)
14 TIGR01628 PABP-1234 polyadenyl 100.0 3.1E-30 6.6E-35 309.7 24.5 261 463-745 88-363 (562)
15 TIGR01648 hnRNP-R-Q heterogene 100.0 2E-29 4.4E-34 295.9 25.7 239 462-744 57-305 (578)
16 KOG0117 Heterogeneous nuclear 100.0 4.6E-29 1E-33 272.2 20.7 240 461-743 81-328 (506)
17 KOG0124 Polypyrimidine tract-b 100.0 1.6E-28 3.5E-33 260.6 21.3 267 461-740 111-529 (544)
18 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 7.4E-27 1.6E-31 274.9 30.0 246 464-737 97-465 (481)
19 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 2.1E-26 4.5E-31 260.5 26.9 161 552-745 5-168 (352)
20 KOG0123 Polyadenylate-binding 99.9 2.7E-26 5.8E-31 258.8 22.1 241 465-744 3-244 (369)
21 KOG0127 Nucleolar protein fibr 99.9 2.3E-25 5E-30 247.6 22.9 264 464-745 6-377 (678)
22 KOG0148 Apoptosis-promoting RN 99.9 2.9E-25 6.3E-30 229.3 18.2 224 460-745 3-237 (321)
23 KOG0144 RNA-binding protein CU 99.9 2.4E-24 5.2E-29 234.4 18.5 162 461-628 32-206 (510)
24 TIGR01659 sex-lethal sex-letha 99.9 9.4E-24 2E-28 237.0 22.0 164 460-629 104-276 (346)
25 KOG0124 Polypyrimidine tract-b 99.9 2.1E-24 4.6E-29 229.4 12.1 172 552-745 115-289 (544)
26 KOG0127 Nucleolar protein fibr 99.9 6.6E-22 1.4E-26 220.3 22.9 188 551-751 6-201 (678)
27 KOG0123 Polyadenylate-binding 99.9 1E-22 2.2E-27 229.9 16.6 260 461-744 74-347 (369)
28 TIGR01648 hnRNP-R-Q heterogene 99.9 8.7E-22 1.9E-26 231.8 22.6 184 521-743 19-219 (578)
29 TIGR01659 sex-lethal sex-letha 99.9 6.9E-22 1.5E-26 222.0 20.4 160 552-744 109-271 (346)
30 KOG0110 RNA-binding protein (R 99.9 3.7E-21 8E-26 221.2 17.9 251 459-745 381-692 (725)
31 KOG0148 Apoptosis-promoting RN 99.8 7E-21 1.5E-25 197.1 13.9 157 461-627 60-237 (321)
32 KOG0120 Splicing factor U2AF, 99.8 3.2E-20 6.9E-25 211.8 17.4 165 457-627 283-491 (500)
33 KOG0131 Splicing factor 3b, su 99.8 1.1E-20 2.3E-25 186.1 11.6 164 462-631 8-180 (203)
34 KOG0145 RNA-binding protein EL 99.8 1.8E-19 4E-24 185.1 19.9 168 552-752 43-213 (360)
35 KOG0117 Heterogeneous nuclear 99.8 1E-18 2.2E-23 191.8 14.9 160 460-630 161-333 (506)
36 KOG0144 RNA-binding protein CU 99.8 6E-19 1.3E-23 192.6 11.0 156 552-739 36-196 (510)
37 KOG0110 RNA-binding protein (R 99.8 5.2E-18 1.1E-22 195.5 16.7 237 462-744 226-596 (725)
38 KOG1548 Transcription elongati 99.7 6.3E-17 1.4E-21 173.1 17.7 188 552-743 136-349 (382)
39 KOG0109 RNA-binding protein LA 99.7 5.4E-18 1.2E-22 177.3 9.3 144 464-627 3-149 (346)
40 KOG0109 RNA-binding protein LA 99.7 4.7E-17 1E-21 170.4 11.9 148 552-747 4-151 (346)
41 KOG0131 Splicing factor 3b, su 99.7 1.7E-16 3.8E-21 156.6 12.2 163 551-745 10-176 (203)
42 KOG1190 Polypyrimidine tract-b 99.7 5.7E-15 1.2E-19 160.7 21.8 256 461-745 26-372 (492)
43 KOG4212 RNA-binding protein hn 99.6 1.4E-13 2.9E-18 150.7 22.5 156 461-622 42-288 (608)
44 KOG4205 RNA-binding protein mu 99.5 1.6E-14 3.4E-19 158.6 8.3 164 462-632 5-180 (311)
45 KOG0105 Alternative splicing f 99.5 8E-14 1.7E-18 137.7 12.2 139 461-616 4-176 (241)
46 KOG1190 Polypyrimidine tract-b 99.5 2.1E-12 4.5E-17 141.0 22.1 250 463-742 150-487 (492)
47 KOG0146 RNA-binding protein ET 99.5 5.3E-14 1.1E-18 145.7 7.5 76 552-627 287-364 (371)
48 KOG0146 RNA-binding protein ET 99.5 4.6E-13 9.9E-18 138.8 14.1 89 537-625 2-98 (371)
49 KOG4206 Spliceosomal protein s 99.5 4.8E-13 1E-17 137.4 14.1 153 461-625 7-219 (221)
50 KOG4211 Splicing factor hnRNP- 99.4 2.1E-12 4.6E-17 144.6 17.1 152 463-624 10-178 (510)
51 KOG1456 Heterogeneous nuclear 99.4 3.9E-11 8.4E-16 129.7 24.0 254 462-745 30-362 (494)
52 KOG1548 Transcription elongati 99.4 4.7E-12 1E-16 136.2 14.9 160 461-624 132-348 (382)
53 PLN03134 glycine-rich RNA-bind 99.4 3.4E-12 7.3E-17 126.7 11.8 78 552-629 36-115 (144)
54 KOG1457 RNA binding protein (c 99.4 6.5E-12 1.4E-16 127.7 13.0 149 456-615 27-273 (284)
55 KOG4206 Spliceosomal protein s 99.3 1.9E-11 4.2E-16 125.7 16.0 167 552-735 11-210 (221)
56 KOG1456 Heterogeneous nuclear 99.3 1.3E-10 2.8E-15 125.7 21.9 250 460-736 117-475 (494)
57 PF00076 RRM_1: RNA recognitio 99.2 2.7E-11 5.8E-16 103.8 8.7 69 553-621 1-70 (70)
58 PLN03134 glycine-rich RNA-bind 99.2 1.8E-11 3.9E-16 121.5 7.6 79 462-546 33-112 (144)
59 KOG0105 Alternative splicing f 99.2 7.2E-10 1.6E-14 110.0 16.6 170 552-740 8-182 (241)
60 KOG4205 RNA-binding protein mu 99.2 7.2E-11 1.6E-15 129.9 10.4 164 552-744 8-174 (311)
61 KOG0106 Alternative splicing f 99.2 2.4E-11 5.1E-16 126.3 6.1 143 464-626 2-169 (216)
62 KOG0106 Alternative splicing f 99.2 7E-11 1.5E-15 122.8 8.3 160 552-740 3-165 (216)
63 KOG0132 RNA polymerase II C-te 99.1 2.7E-10 5.9E-15 133.0 11.9 98 463-572 421-528 (894)
64 KOG0125 Ataxin 2-binding prote 99.1 1.6E-10 3.5E-15 123.7 9.0 98 531-628 73-174 (376)
65 PF00076 RRM_1: RNA recognitio 99.1 9.4E-11 2E-15 100.4 4.8 69 466-541 1-70 (70)
66 COG0724 RNA-binding proteins ( 99.1 2.3E-09 5E-14 114.4 15.1 164 551-726 116-285 (306)
67 PLN03120 nucleic acid binding 99.0 8.4E-10 1.8E-14 117.7 10.2 74 552-627 6-79 (260)
68 KOG0126 Predicted RNA-binding 99.0 4.2E-11 9E-16 118.6 0.1 74 552-625 37-112 (219)
69 PF14259 RRM_6: RNA recognitio 99.0 7.4E-10 1.6E-14 95.6 7.9 69 553-621 1-70 (70)
70 PLN03213 repressor of silencin 99.0 7.8E-10 1.7E-14 123.1 9.6 75 551-627 11-87 (759)
71 KOG0107 Alternative splicing f 99.0 7.8E-10 1.7E-14 109.4 8.3 72 551-625 11-82 (195)
72 KOG1365 RNA-binding protein Fu 99.0 1.7E-09 3.6E-14 117.6 11.6 263 461-743 58-359 (508)
73 smart00362 RRM_2 RNA recogniti 99.0 1.8E-09 3.9E-14 91.4 9.2 71 552-622 1-71 (72)
74 KOG0121 Nuclear cap-binding pr 99.0 7.6E-10 1.6E-14 104.1 7.3 74 552-625 38-113 (153)
75 KOG0122 Translation initiation 99.0 1.2E-09 2.5E-14 113.2 9.1 77 552-628 191-269 (270)
76 KOG0121 Nuclear cap-binding pr 99.0 5.2E-10 1.1E-14 105.1 5.8 85 458-548 31-116 (153)
77 COG0724 RNA-binding proteins ( 99.0 1.5E-09 3.3E-14 115.8 10.1 115 463-583 115-258 (306)
78 KOG4212 RNA-binding protein hn 99.0 1.2E-08 2.7E-13 112.4 16.3 176 552-739 46-287 (608)
79 PLN03120 nucleic acid binding 99.0 1.5E-09 3.2E-14 115.9 8.2 75 463-549 4-81 (260)
80 KOG0114 Predicted RNA-binding 98.9 2.9E-09 6.4E-14 96.7 8.6 75 552-627 20-94 (124)
81 KOG1457 RNA binding protein (c 98.9 1.4E-08 3.1E-13 103.7 14.1 168 552-734 36-274 (284)
82 KOG4207 Predicted splicing fac 98.9 2.2E-09 4.8E-14 108.4 6.4 76 552-627 15-92 (256)
83 smart00361 RRM_1 RNA recogniti 98.9 5.4E-09 1.2E-13 90.9 7.7 62 679-740 4-69 (70)
84 PLN03121 nucleic acid binding 98.9 7.4E-09 1.6E-13 108.8 9.9 73 552-626 7-79 (243)
85 PF14259 RRM_6: RNA recognitio 98.9 3.1E-09 6.6E-14 91.7 5.7 69 466-541 1-70 (70)
86 KOG0113 U1 small nuclear ribon 98.9 5.7E-09 1.2E-13 110.8 8.6 74 552-625 103-178 (335)
87 KOG4211 Splicing factor hnRNP- 98.9 4.2E-08 9.2E-13 110.6 15.7 168 552-744 12-180 (510)
88 PLN03121 nucleic acid binding 98.8 6.8E-09 1.5E-13 109.1 8.5 79 462-549 4-82 (243)
89 smart00360 RRM RNA recognition 98.8 1.5E-08 3.2E-13 85.4 8.6 68 555-622 1-70 (71)
90 KOG0126 Predicted RNA-binding 98.8 1.9E-10 4E-15 114.1 -3.7 87 456-548 28-115 (219)
91 KOG0130 RNA-binding protein RB 98.8 9.5E-09 2.1E-13 97.5 7.7 78 552-629 74-153 (170)
92 PF13893 RRM_5: RNA recognitio 98.8 1.3E-08 2.9E-13 84.2 7.3 55 684-742 1-55 (56)
93 KOG0149 Predicted RNA-binding 98.8 7.3E-09 1.6E-13 107.2 7.0 76 551-627 13-90 (247)
94 KOG0125 Ataxin 2-binding prote 98.8 1.6E-08 3.5E-13 108.6 9.7 79 459-547 92-173 (376)
95 smart00362 RRM_2 RNA recogniti 98.8 1.7E-08 3.7E-13 85.4 7.8 71 465-543 1-72 (72)
96 KOG0107 Alternative splicing f 98.8 7.6E-09 1.6E-13 102.5 6.2 70 463-544 10-81 (195)
97 PF13893 RRM_5: RNA recognitio 98.8 2.5E-08 5.5E-13 82.5 8.0 56 567-625 1-56 (56)
98 cd00590 RRM RRM (RNA recogniti 98.8 4.2E-08 9.1E-13 83.4 9.6 72 552-623 1-73 (74)
99 KOG0149 Predicted RNA-binding 98.8 7.9E-09 1.7E-13 106.9 5.6 75 463-543 12-86 (247)
100 PLN03213 repressor of silencin 98.7 9.1E-09 2E-13 114.7 6.1 75 462-546 9-86 (759)
101 KOG4454 RNA binding protein (R 98.7 2.4E-09 5.2E-14 109.1 -0.6 139 460-620 6-155 (267)
102 KOG0122 Translation initiation 98.7 2.1E-08 4.4E-13 104.2 5.7 79 462-546 188-267 (270)
103 KOG0111 Cyclophilin-type pepti 98.7 1.7E-08 3.7E-13 102.8 5.0 81 552-632 12-94 (298)
104 KOG0108 mRNA cleavage and poly 98.7 3.9E-08 8.5E-13 113.0 8.1 76 552-627 20-97 (435)
105 KOG0113 U1 small nuclear ribon 98.6 4.5E-08 9.7E-13 104.2 7.1 78 460-543 98-176 (335)
106 smart00361 RRM_1 RNA recogniti 98.6 9.1E-08 2E-12 83.2 7.7 59 564-622 2-69 (70)
107 KOG0108 mRNA cleavage and poly 98.6 4.7E-08 1E-12 112.3 6.0 79 464-548 19-98 (435)
108 KOG0114 Predicted RNA-binding 98.6 1.1E-07 2.4E-12 86.6 6.6 73 462-546 17-93 (124)
109 KOG0129 Predicted RNA-binding 98.6 3E-07 6.5E-12 104.5 11.6 146 460-609 256-432 (520)
110 KOG1365 RNA-binding protein Fu 98.6 9.6E-08 2.1E-12 104.2 6.8 159 465-626 163-360 (508)
111 cd00590 RRM RRM (RNA recogniti 98.6 1.3E-07 2.8E-12 80.4 6.3 72 465-543 1-73 (74)
112 KOG0112 Large RNA-binding prot 98.6 5.4E-08 1.2E-12 116.0 5.2 163 455-628 364-531 (975)
113 KOG0130 RNA-binding protein RB 98.5 3E-07 6.5E-12 87.5 7.5 87 652-750 69-156 (170)
114 smart00360 RRM RNA recognition 98.5 3.5E-07 7.6E-12 76.9 6.9 70 468-543 1-71 (71)
115 KOG0111 Cyclophilin-type pepti 98.5 9.9E-08 2.2E-12 97.3 3.8 81 460-546 7-88 (298)
116 KOG4207 Predicted splicing fac 98.5 2E-07 4.3E-12 94.6 5.5 76 463-544 13-89 (256)
117 KOG0226 RNA-binding proteins [ 98.4 8.6E-07 1.9E-11 92.7 8.3 119 506-624 135-266 (290)
118 KOG4307 RNA binding protein RB 98.3 3E-06 6.5E-11 98.6 12.2 156 462-624 310-510 (944)
119 KOG1996 mRNA splicing factor [ 98.3 5.1E-07 1.1E-11 95.7 5.4 83 651-740 277-361 (378)
120 KOG0128 RNA-binding protein SA 98.3 5.6E-08 1.2E-12 115.6 -2.1 147 461-625 665-812 (881)
121 KOG4307 RNA binding protein RB 98.2 5.7E-06 1.2E-10 96.3 11.3 180 552-745 313-513 (944)
122 KOG0132 RNA polymerase II C-te 98.2 3.4E-06 7.4E-11 99.5 8.2 75 552-630 423-497 (894)
123 KOG0128 RNA-binding protein SA 98.2 2.8E-07 6.1E-12 109.7 -0.7 224 463-742 571-811 (881)
124 KOG4208 Nucleolar RNA-binding 98.2 4E-06 8.6E-11 85.7 7.4 77 552-628 51-130 (214)
125 KOG4676 Splicing factor, argin 98.2 7.7E-07 1.7E-11 97.7 2.4 147 464-616 8-214 (479)
126 KOG0415 Predicted peptidyl pro 98.1 3E-06 6.6E-11 91.9 6.2 76 552-627 241-318 (479)
127 KOG0153 Predicted RNA-binding 98.1 8.5E-06 1.8E-10 88.8 9.5 80 544-627 222-302 (377)
128 KOG4210 Nuclear localization s 98.1 2.7E-06 5.8E-11 93.7 4.5 160 462-628 87-264 (285)
129 KOG4454 RNA binding protein (R 98.1 1.5E-06 3.2E-11 89.1 2.1 149 552-742 11-159 (267)
130 KOG2193 IGF-II mRNA-binding pr 98.0 4.8E-07 1E-11 99.8 -2.1 149 464-625 2-154 (584)
131 KOG4208 Nucleolar RNA-binding 98.0 3.4E-06 7.4E-11 86.2 4.0 76 463-543 49-125 (214)
132 KOG4661 Hsp27-ERE-TATA-binding 98.0 1E-05 2.2E-10 92.1 7.3 81 461-547 403-484 (940)
133 KOG4660 Protein Mei2, essentia 98.0 1.3E-05 2.8E-10 92.3 7.9 149 460-625 72-247 (549)
134 KOG0153 Predicted RNA-binding 98.0 1.2E-05 2.5E-10 87.8 6.3 76 460-547 225-302 (377)
135 KOG0112 Large RNA-binding prot 97.9 9.1E-06 2E-10 97.5 5.2 157 552-748 374-531 (975)
136 KOG2202 U2 snRNP splicing fact 97.9 2.6E-06 5.7E-11 89.7 0.4 43 897-939 110-152 (260)
137 KOG4661 Hsp27-ERE-TATA-binding 97.8 3.1E-05 6.8E-10 88.3 7.6 75 552-626 407-483 (940)
138 KOG1996 mRNA splicing factor [ 97.8 7E-06 1.5E-10 87.2 2.2 44 896-939 328-371 (378)
139 KOG0533 RRM motif-containing p 97.8 4.8E-05 1E-09 81.3 8.5 76 552-627 85-161 (243)
140 KOG4676 Splicing factor, argin 97.8 2.5E-05 5.4E-10 86.1 6.3 166 552-734 9-214 (479)
141 KOG0129 Predicted RNA-binding 97.8 0.00028 6.1E-09 80.9 13.7 157 552-727 261-432 (520)
142 KOG0415 Predicted peptidyl pro 97.8 2.2E-05 4.8E-10 85.4 4.5 79 459-543 235-314 (479)
143 KOG4660 Protein Mei2, essentia 97.7 2.5E-05 5.4E-10 90.0 3.7 68 551-621 76-143 (549)
144 KOG4210 Nuclear localization s 97.6 5.7E-05 1.2E-09 83.3 5.2 167 552-743 90-261 (285)
145 KOG2202 U2 snRNP splicing fact 97.6 3E-05 6.6E-10 81.8 2.8 68 675-742 76-144 (260)
146 KOG0151 Predicted splicing reg 97.6 8.7E-05 1.9E-09 87.2 6.4 84 460-546 171-255 (877)
147 KOG0533 RRM motif-containing p 97.6 9.6E-05 2.1E-09 79.1 6.1 77 461-544 81-158 (243)
148 KOG0116 RasGAP SH3 binding pro 97.6 0.00016 3.5E-09 83.1 8.4 77 461-543 286-362 (419)
149 KOG0151 Predicted splicing reg 97.5 0.00013 2.9E-09 85.6 6.9 74 552-625 176-254 (877)
150 KOG0116 RasGAP SH3 binding pro 97.4 0.00024 5.1E-09 81.8 7.3 75 552-627 290-366 (419)
151 PF04059 RRM_2: RNA recognitio 97.4 0.00089 1.9E-08 62.0 9.1 74 552-625 3-84 (97)
152 KOG0226 RNA-binding proteins [ 97.4 0.00024 5.1E-09 74.9 5.9 79 460-544 187-266 (290)
153 KOG4209 Splicing factor RNPS1, 97.2 0.00039 8.4E-09 74.5 5.3 77 549-626 100-178 (231)
154 PF04059 RRM_2: RNA recognitio 97.2 0.00071 1.5E-08 62.6 6.3 69 464-536 2-71 (97)
155 PF11608 Limkain-b1: Limkain b 97.2 0.0014 2.9E-08 58.4 7.2 70 465-545 4-74 (90)
156 KOG4209 Splicing factor RNPS1, 97.2 0.00027 5.9E-09 75.7 3.5 78 460-543 98-175 (231)
157 KOG2193 IGF-II mRNA-binding pr 97.0 0.00013 2.8E-09 81.1 -0.9 150 552-745 3-156 (584)
158 PF11608 Limkain-b1: Limkain b 96.9 0.003 6.5E-08 56.3 7.0 67 552-626 4-75 (90)
159 KOG2314 Translation initiation 96.9 0.0022 4.9E-08 74.0 7.9 83 654-742 57-140 (698)
160 PF06495 Transformer: Fruit fl 96.7 0.0045 9.6E-08 61.9 7.6 17 389-405 115-131 (182)
161 KOG2888 Putative RNA binding p 96.6 0.00085 1.9E-08 72.7 1.7 9 84-92 217-225 (453)
162 KOG1995 Conserved Zn-finger pr 96.6 0.0029 6.3E-08 70.1 5.7 84 461-545 64-151 (351)
163 KOG1995 Conserved Zn-finger pr 96.4 0.0025 5.5E-08 70.5 4.0 78 552-629 68-155 (351)
164 PF08777 RRM_3: RNA binding mo 96.4 0.0062 1.4E-07 57.4 5.7 57 552-612 3-59 (105)
165 COG5175 MOT2 Transcriptional r 95.8 0.019 4.1E-07 62.8 6.7 75 552-626 116-201 (480)
166 KOG0115 RNA-binding protein p5 95.5 0.033 7.1E-07 59.3 6.9 98 601-738 5-102 (275)
167 KOG4849 mRNA cleavage factor I 95.3 0.025 5.4E-07 62.1 5.6 79 460-542 77-156 (498)
168 KOG2314 Translation initiation 95.2 0.049 1.1E-06 63.4 7.7 72 552-623 60-139 (698)
169 KOG0115 RNA-binding protein p5 94.8 0.052 1.1E-06 57.9 6.0 86 523-611 6-93 (275)
170 PF08777 RRM_3: RNA binding mo 94.6 0.056 1.2E-06 51.0 5.2 53 465-529 3-55 (105)
171 KOG3152 TBP-binding protein, a 94.4 0.044 9.4E-07 58.4 4.3 68 552-619 76-157 (278)
172 PF14605 Nup35_RRM_2: Nup53/35 94.2 0.094 2E-06 43.2 5.1 52 464-528 2-53 (53)
173 KOG0670 U4/U6-associated splic 94.2 0.12 2.7E-06 60.3 7.8 10 567-576 520-529 (752)
174 PF14605 Nup35_RRM_2: Nup53/35 94.2 0.085 1.8E-06 43.4 4.8 39 682-725 15-53 (53)
175 PF05172 Nup35_RRM: Nup53/35/4 94.1 0.19 4.2E-06 46.9 7.5 72 552-625 8-89 (100)
176 KOG1855 Predicted RNA-binding 93.8 0.059 1.3E-06 61.0 4.0 75 653-739 229-317 (484)
177 KOG1847 mRNA splicing factor [ 93.7 0.07 1.5E-06 62.9 4.6 21 219-239 705-725 (878)
178 KOG1847 mRNA splicing factor [ 93.6 0.083 1.8E-06 62.2 4.9 10 125-134 635-644 (878)
179 PF08952 DUF1866: Domain of un 93.5 0.24 5.3E-06 49.1 7.3 57 565-628 51-107 (146)
180 KOG3152 TBP-binding protein, a 93.4 0.033 7.2E-07 59.3 1.2 79 462-540 73-158 (278)
181 KOG4849 mRNA cleavage factor I 93.3 0.065 1.4E-06 59.0 3.4 73 552-624 82-158 (498)
182 PF05172 Nup35_RRM: Nup53/35/4 93.1 0.2 4.3E-06 46.9 5.8 78 463-541 6-84 (100)
183 COG5175 MOT2 Transcriptional r 92.9 0.16 3.4E-06 55.8 5.5 59 685-743 138-200 (480)
184 KOG1855 Predicted RNA-binding 92.9 0.081 1.8E-06 59.9 3.4 63 551-613 232-309 (484)
185 KOG0670 U4/U6-associated splic 92.4 0.15 3.2E-06 59.6 4.7 12 684-695 520-531 (752)
186 KOG2253 U1 snRNP complex, subu 92.1 0.19 4.1E-06 60.0 5.3 69 460-543 37-106 (668)
187 KOG2416 Acinus (induces apopto 91.5 0.27 5.8E-06 57.9 5.5 65 460-535 441-506 (718)
188 KOG2416 Acinus (induces apopto 90.9 0.16 3.5E-06 59.7 3.0 70 552-625 446-519 (718)
189 PF08648 DUF1777: Protein of u 88.8 0.55 1.2E-05 48.5 4.7 8 479-486 161-168 (180)
190 PF10309 DUF2414: Protein of u 88.6 1.9 4E-05 36.8 6.8 52 552-610 7-62 (62)
191 PF08952 DUF1866: Domain of un 87.4 2.7 5.8E-05 41.9 8.2 61 677-745 46-106 (146)
192 PF07576 BRAP2: BRCA1-associat 87.2 2.8 6E-05 40.0 7.9 65 552-616 15-80 (110)
193 PF08675 RNA_bind: RNA binding 87.1 2.2 4.7E-05 38.5 6.6 53 552-611 11-63 (87)
194 PF15023 DUF4523: Protein of u 85.6 2 4.4E-05 42.4 6.1 67 552-624 88-158 (166)
195 PF04847 Calcipressin: Calcipr 82.1 3.8 8.3E-05 42.6 7.0 61 563-627 8-70 (184)
196 KOG2548 SWAP mRNA splicing reg 82.0 0.43 9.4E-06 55.4 -0.0 20 469-488 555-574 (653)
197 KOG0804 Cytoplasmic Zn-finger 81.6 3.4 7.5E-05 47.7 6.8 68 550-617 74-142 (493)
198 KOG2068 MOT2 transcription fac 79.7 0.75 1.6E-05 51.2 0.9 75 552-626 79-161 (327)
199 KOG2591 c-Mpl binding protein, 79.6 13 0.00029 44.0 10.8 96 521-623 147-247 (684)
200 PF03467 Smg4_UPF3: Smg-4/UPF3 79.0 2.5 5.4E-05 43.7 4.4 64 552-615 9-80 (176)
201 KOG3263 Nucleic acid binding p 77.5 0.66 1.4E-05 46.6 -0.3 8 287-294 65-72 (196)
202 KOG4574 RNA-binding protein (c 77.4 2.6 5.6E-05 52.0 4.4 72 552-627 300-373 (1007)
203 PF03467 Smg4_UPF3: Smg-4/UPF3 77.2 0.87 1.9E-05 47.0 0.5 75 462-539 6-84 (176)
204 PF07292 NID: Nmi/IFP 35 domai 77.0 2.5 5.4E-05 38.7 3.2 58 514-571 1-73 (88)
205 PF15023 DUF4523: Protein of u 77.0 3.7 8E-05 40.6 4.5 46 682-733 105-150 (166)
206 PF07576 BRAP2: BRCA1-associat 74.7 9.8 0.00021 36.3 6.7 68 462-537 12-81 (110)
207 PF10567 Nab6_mRNP_bdg: RNA-re 74.5 56 0.0012 36.3 13.1 187 548-743 13-229 (309)
208 PF04847 Calcipressin: Calcipr 74.3 4.4 9.6E-05 42.2 4.7 59 680-743 8-68 (184)
209 KOG2253 U1 snRNP complex, subu 74.0 2.3 4.9E-05 51.3 2.7 66 552-624 42-107 (668)
210 PF10309 DUF2414: Protein of u 71.6 21 0.00045 30.6 7.2 56 463-529 5-60 (62)
211 KOG0804 Cytoplasmic Zn-finger 70.1 12 0.00027 43.4 7.3 67 463-537 74-142 (493)
212 KOG2591 c-Mpl binding protein, 69.7 7 0.00015 46.2 5.4 68 463-541 175-245 (684)
213 KOG4285 Mitotic phosphoprotein 69.1 6.3 0.00014 43.4 4.5 62 465-539 199-260 (350)
214 KOG2068 MOT2 transcription fac 66.3 2.8 6.1E-05 46.8 1.3 58 685-742 98-159 (327)
215 KOG2135 Proteins containing th 66.1 2.7 5.9E-05 48.7 1.2 75 461-547 370-445 (526)
216 PF08675 RNA_bind: RNA binding 65.4 14 0.00031 33.5 5.2 41 682-729 23-63 (87)
217 KOG4246 Predicted DNA-binding 65.3 2.9 6.2E-05 51.3 1.2 7 711-717 972-978 (1194)
218 KOG1049 Polyadenylation factor 64.1 4 8.6E-05 48.3 2.0 8 70-77 175-182 (538)
219 KOG3869 Uncharacterized conser 63.5 7.5 0.00016 44.5 3.9 10 56-65 58-67 (450)
220 PF03880 DbpA: DbpA RNA bindin 63.0 19 0.00042 31.5 5.7 59 560-625 11-74 (74)
221 KOG2318 Uncharacterized conser 62.1 19 0.00041 43.1 6.9 82 649-742 168-302 (650)
222 KOG4285 Mitotic phosphoprotein 59.0 15 0.00032 40.7 5.0 69 553-627 200-269 (350)
223 KOG3869 Uncharacterized conser 58.5 6.7 0.00014 45.0 2.4 6 128-133 129-134 (450)
224 PF14111 DUF4283: Domain of un 56.7 6.5 0.00014 38.9 1.9 108 465-582 17-137 (153)
225 KOG4574 RNA-binding protein (c 54.4 27 0.00059 43.5 6.7 73 460-544 295-370 (1007)
226 KOG4246 Predicted DNA-binding 49.4 8.3 0.00018 47.5 1.4 8 303-310 354-361 (1194)
227 KOG2135 Proteins containing th 49.0 12 0.00026 43.7 2.5 72 553-629 375-447 (526)
228 PF02956 TT_ORF1: TT viral orf 47.2 14 0.0003 44.8 2.9 8 480-487 118-125 (525)
229 PF15513 DUF4651: Domain of un 43.0 52 0.0011 28.2 4.8 25 678-702 5-29 (62)
230 PF11767 SET_assoc: Histone ly 41.7 26 0.00057 30.3 2.9 30 900-929 36-65 (66)
231 PF03880 DbpA: DbpA RNA bindin 41.0 54 0.0012 28.7 4.9 62 473-544 11-73 (74)
232 KOG2318 Uncharacterized conser 40.0 2.2E+02 0.0048 34.6 10.9 129 461-624 172-304 (650)
233 KOG2146 Splicing coactivator S 38.9 2.1E+02 0.0046 31.7 9.8 10 43-52 17-26 (354)
234 PF15519 RBM39linker: linker b 38.2 14 0.0003 32.6 0.7 18 836-853 52-69 (73)
235 PF15519 RBM39linker: linker b 38.0 20 0.00043 31.7 1.7 17 653-669 52-68 (73)
236 KOG1882 Transcriptional regula 37.8 23 0.00051 38.0 2.4 10 590-599 216-225 (293)
237 PF03468 XS: XS domain; Inter 30.9 78 0.0017 30.5 4.6 51 552-603 10-69 (116)
238 KOG2146 Splicing coactivator S 27.9 2E+02 0.0044 31.8 7.5 7 66-72 49-55 (354)
239 PF11767 SET_assoc: Histone ly 27.1 2.7E+02 0.0059 24.1 6.8 55 561-622 11-65 (66)
240 KOG4213 RNA-binding protein La 26.0 1.3E+02 0.0028 31.2 5.3 43 682-726 124-168 (205)
241 KOG4410 5-formyltetrahydrofola 25.7 1.4E+02 0.003 33.0 5.8 46 552-601 332-378 (396)
242 KOG2891 Surface glycoprotein [ 24.4 26 0.00057 38.1 0.2 53 682-734 176-248 (445)
243 KOG1902 Putative signal transd 23.0 52 0.0011 37.0 2.1 24 27-50 153-180 (441)
244 KOG0334 RNA helicase [RNA proc 22.0 35 0.00077 43.7 0.6 18 901-918 955-972 (997)
245 KOG4410 5-formyltetrahydrofola 20.3 1.7E+02 0.0038 32.3 5.2 48 463-521 330-377 (396)
246 PF00906 Hepatitis_core: Hepat 20.1 34 0.00075 34.6 0.0 8 286-293 169-176 (187)
No 1
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=1.9e-51 Score=486.91 Aligned_cols=285 Identities=26% Similarity=0.407 Sum_probs=241.9
Q ss_pred cccCCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHHccCCccc
Q 002280 457 TQSNRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFS 536 (943)
Q Consensus 457 ~~~~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~LnG~~l~ 536 (943)
++.++..++|||||||+.+|+++|+++|++++...++.......+|..+.++.++|||||+|.+.++|..||.|||+.|.
T Consensus 169 ~~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~~~kg~afVeF~~~e~A~~Al~l~g~~~~ 248 (509)
T TIGR01642 169 QQATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNINKEKNFAFLEFRTVEEATFAMALDSIIYS 248 (509)
T ss_pred ccCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEECCCCCEEEEEeCCHHHHhhhhcCCCeEee
Confidence 45678889999999999999999999999998777765554345888899999999999999999999999999999999
Q ss_pred cccccccCCcccee---------------------------------EEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEE
Q 002280 537 GSILKIKRPKEFVE---------------------------------VAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFE 583 (943)
Q Consensus 537 Gr~LkV~rp~d~~~---------------------------------~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~ 583 (943)
|++|+|.+|.+|.+ .+|||+|||..+++++|.++|+.||.|..+.|+
T Consensus 249 g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~ 328 (509)
T TIGR01642 249 NVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLI 328 (509)
T ss_pred CceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEE
Confidence 99999998776541 289999999999999999999999999999998
Q ss_pred ec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCCCcCCCCC---CCCCCC----CCCCcCCCCCCC
Q 002280 584 VN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGSIMDNSG---NPPFHG----IPKHALPLLKKP 654 (943)
Q Consensus 584 ~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~~~~~~~~---~~~~~~----ip~~~~~~~~~p 654 (943)
.+ ++.++|||||+|.+.++|..|+..|||..|+|+.|.|.+|........... ..++.. +..........|
T Consensus 329 ~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (509)
T TIGR01642 329 KDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKP 408 (509)
T ss_pred ecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccccccccccccchhhhccccCCC
Confidence 87 466899999999999999999999999999999999999865443221111 111111 111112233568
Q ss_pred ceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhcCCCCeEEEEEecCC----CCCcceeEEEEeCCHHHHHHHHHHhCC
Q 002280 655 TEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYG----DSNISTIQACEGNENTASAGVGQNLTN 730 (943)
Q Consensus 655 s~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskFG~V~~V~I~r~~----~g~~~G~~FVeF~~~e~A~~Ai~~LnG 730 (943)
++||+|.||+++++| +++.+|++|.+||+++|++||.|+.|.|+++. .+...|++||+|.+.++|.+|+.+|||
T Consensus 409 s~v~~l~N~~~~~~l--~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnG 486 (509)
T TIGR01642 409 TKVVQLTNLVTGDDL--MDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNG 486 (509)
T ss_pred ceEEEeccCCchhHh--cCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCC
Confidence 999999999999998 69999999999999999999999999999863 234568999999999999999999999
Q ss_pred CccCCCceEEEEe
Q 002280 731 DETNEKGERLEEV 743 (943)
Q Consensus 731 r~~~~k~~~v~~~ 743 (943)
++|+++++.+...
T Consensus 487 r~~~gr~v~~~~~ 499 (509)
T TIGR01642 487 RKFNDRVVVAAFY 499 (509)
T ss_pred CEECCeEEEEEEe
Confidence 9999999988664
No 2
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.9e-45 Score=415.32 Aligned_cols=301 Identities=34% Similarity=0.534 Sum_probs=243.9
Q ss_pred ccccCCCCCCCCCccccCCccccccccccccCCCcCCCCCCCCccccCCCcCcccchhhcccccccccccccccCCCCCe
Q 002280 386 PEKKSAKWDVAPVETYSVPSNVHTSNQAASSNAHEMVSSDPVTSTTQKPLAGISVSASLAKLNVSMDSVQLTQSNRPMRR 465 (943)
Q Consensus 386 ~~rr~~~~di~P~~~~~v~~~~q~~~qa~~~g~~p~p~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~s~~~~~~~~~~rt 465 (943)
..+....|+++|++|+.+++.. +...+++.+.++.|.........+. ......+.+..+++.+.++
T Consensus 112 ~~r~~~~~~~~~~~fe~~~p~~-----~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~t~q~~r 177 (500)
T KOG0120|consen 112 YSRKRSLWDVPPEGFETITPDG-----AKLYKNFNATGQVPGDLSNPKKSLK---------LPQLPTPPMDSQATRQARR 177 (500)
T ss_pred cccchhhhcCCCCCCcccCchh-----hhhhhhccccCCCCCCccccccccc---------cccCCCCccCcchhhhhhh
Confidence 3456678999999999887722 1111223333333332211110000 0001112334466788999
Q ss_pred EEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHHccCCccccccccccCC
Q 002280 466 LCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSILKIKRP 545 (943)
Q Consensus 466 LfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~LnG~~l~Gr~LkV~rp 545 (943)
+||+++|+.++++.+..+|+.-+...|+........++.+.++..++||||+|.+.++|..|+.++++.+.|.++++.+|
T Consensus 178 ~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~~nfa~ie~~s~~~at~~~~~~~~~f~g~~~~~~r~ 257 (500)
T KOG0120|consen 178 LYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLEKNFAFIEFRSISEATEAMALDGIIFEGRPLKIRRP 257 (500)
T ss_pred hcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecccccceeEEecCCCchhhhhcccchhhCCCCceeccc
Confidence 99999999999999999999987777887776556899999999999999999999999999999999999999999988
Q ss_pred ccceeE---------------------------EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecC--CCCCCEEEEe
Q 002280 546 KEFVEV---------------------------AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIE 596 (943)
Q Consensus 546 ~d~~~~---------------------------~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~--~~skG~aFVe 596 (943)
.+|.+. ++||++||..+++.++.++...||++..+.++.+. +.++||||.+
T Consensus 258 ~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~e 337 (500)
T KOG0120|consen 258 HDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCE 337 (500)
T ss_pred ccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeee
Confidence 876543 89999999999999999999999999999999884 4789999999
Q ss_pred ecChhHHHHHHHHhCCCccCCeEEEEEEcccCCCcCCCCCC---CCCCCCCCCcCCCCCCCceEEEeccCCCcCCCCCCC
Q 002280 597 YVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGSIMDNSGN---PPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLS 673 (943)
Q Consensus 597 F~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~~~~~~~~~---~~~~~ip~~~~~~~~~ps~vL~L~Nlv~~~~l~~i~ 673 (943)
|.++..+..|++.|||+.+++++|.|+.|.+.+.......+ .++++++....+..+.|+.||+|.|++++++| ++
T Consensus 338 y~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deL--kd 415 (500)
T KOG0120|consen 338 YCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDEL--KD 415 (500)
T ss_pred eeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHh--cc
Confidence 99999999999999999999999999999887765433322 24666776666777899999999999999999 69
Q ss_pred hHHHHHHHHHHHHHhcCCCCeEEEEEecC
Q 002280 674 ELEVEEVLEDVRLECARFGSVKSVNVVKY 702 (943)
Q Consensus 674 ~~~~~ei~eDlre~fskFG~V~~V~I~r~ 702 (943)
+++|++|+|||+.+|.+||.|.+|.||++
T Consensus 416 d~EyeeIlEdvr~ec~k~g~v~~v~ipr~ 444 (500)
T KOG0120|consen 416 DEEYEEILEDVRTECAKFGAVRSVEIPRP 444 (500)
T ss_pred hHHHHHHHHHHHHHhcccCceeEEecCCC
Confidence 99999999999999999999999999995
No 3
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=100.00 E-value=5.4e-45 Score=406.66 Aligned_cols=329 Identities=17% Similarity=0.184 Sum_probs=225.2
Q ss_pred CCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCCCcCCCCCCC
Q 002280 561 TLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGSIMDNSGNP 638 (943)
Q Consensus 561 ~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~~~~~~~~~~ 638 (943)
.+++-+|.++|+.+|.|..|.++.| ...++|.|||+|.+.+.+..|| +|.|..+.|.+|.|.......+.... ..
T Consensus 190 r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~sEaeknr~a~--~s 266 (549)
T KOG0147|consen 190 RNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQLSEAEKNRAAN--AS 266 (549)
T ss_pred cCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEecccHHHHHHHHh--cc
Confidence 3456788899999999999999888 4567999999999999999999 59999999999999865433222111 11
Q ss_pred CCCCCCCCcCCCCCCCceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhcCCCCeEEEEEecCC-CCCcceeEEEEeCC
Q 002280 639 PFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYG-DSNISTIQACEGNE 717 (943)
Q Consensus 639 ~~~~ip~~~~~~~~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskFG~V~~V~I~r~~-~g~~~G~~FVeF~~ 717 (943)
+..+.... ..|-.-|++.||....+. ++|+..|++||.|+.|.++++. +|.++|||||+|.+
T Consensus 267 ~a~~~k~~-----~~p~~rl~vgnLHfNite------------~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~ 329 (549)
T KOG0147|consen 267 PALQGKGF-----TGPMRRLYVGNLHFNITE------------DMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVN 329 (549)
T ss_pred cccccccc-----ccchhhhhhcccccCchH------------HHHhhhccCcccceeeeeccccccccccCcceEEEec
Confidence 11111111 122222889999664332 6899999999999999999996 99999999999999
Q ss_pred HHHHHHHHHHhCCCccCCCceEEEEeccccccccchhhhccchhhHhhhcccccccCCCCCCCCCCCCcccccccchhhh
Q 002280 718 NTASAGVGQNLTNDETNEKGERLEEVTDHKSIKNNELEILNDSKEVMEAGEVNNVKDNRPASGTMGDEPSQLCELDTDMA 797 (943)
Q Consensus 718 ~e~A~~Ai~~LnGr~~~~k~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~~lm~~~~~~~~~~~~~~a 797 (943)
.++|.+|+.+|||.++.|++++|..+++.-.++..+ ....+.|.++ ..+| .++ .+..+..|+
T Consensus 330 ~~~ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a~------------~~~~d~D~~d--~~gl---~~~-~~g~~Ql~~ 391 (549)
T KOG0147|consen 330 KEDARKALEQLNGFELAGRLIKVSVVTERVDTKEAA------------VTQFDFDEDD--RQGL---SLG-SGGRNQLMA 391 (549)
T ss_pred HHHHHHHHHHhccceecCceEEEEEeeeeccccccc------------ccccccchhh--cccc---ccc-cccHHHHHH
Confidence 999999999999999999999999888754222110 1112222222 1122 111 111222222
Q ss_pred hhhhc-cCCccccccCC---Ccccc-----C--CCCCCCCCCCCcccccccccccccccccccccccccccccCCCcccc
Q 002280 798 VEYQA-RDSTSEIVSQG---VPTQV-----N--TLKDSPCAHDDKVTCNIQLEHMSEENKSSAKEDLNLEEVNGNSEAFT 866 (943)
Q Consensus 798 ~~~~~-~~~~~~~~~~~---~~~~~-----~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 866 (943)
.+-.+ ..+.++..... .+.+. + .....++...- -+-|.++++|.++.+|||+..++
T Consensus 392 kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~-------------~p~~~i~t~C~lL~nMFdpstet 458 (549)
T KOG0147|consen 392 KLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADA-------------SPAFDIPTQCLLLSNMFDPSTET 458 (549)
T ss_pred HHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCcccc-------------ccccCCccHHHHHhhcCCccccc
Confidence 21111 11111111111 00000 0 00000000000 12233455555566666666677
Q ss_pred CcccccccccccccC----CCCCCCCCCCCCccCCceEEEEecCHHHHHHHHHHhhcCccCCceEEEEeechhhHHhhcC
Q 002280 867 GASNEMGMQSSAVEN----GDNENQDPNQGHIFEPGCVFVEYMRAEASCMAAHSLHRRLFDDRIVAVEYIPLNLYRARFS 942 (943)
Q Consensus 867 ~~~~~~~~~e~~~~~----~~~~~~~~d~~~i~~~g~v~v~f~~~~~a~~a~~~l~gr~f~~~~v~~~y~~~~~y~~~fp 942 (943)
++.|+++|.|||.|+ |.+.|+.||+|+ .|||||+|.++++|.+|+++||||||+||+|+|.|||+..||.+||
T Consensus 459 e~n~d~eI~edV~Eec~k~g~v~hi~vd~ns---~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~~~~Y~~~FP 535 (549)
T KOG0147|consen 459 EPNWDQEIREDVIEECGKHGKVCHIFVDKNS---AGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLPLERYHSKFP 535 (549)
T ss_pred CcchhhHHHHHHHHHHHhcCCeeEEEEccCC---CceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEeehhhhhhhCC
Confidence 788999999999988 999999999999 4999999999999999999999999999999999999999999999
Q ss_pred C
Q 002280 943 K 943 (943)
Q Consensus 943 ~ 943 (943)
+
T Consensus 536 ~ 536 (549)
T KOG0147|consen 536 D 536 (549)
T ss_pred C
Confidence 5
No 4
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=8.9e-41 Score=390.85 Aligned_cols=273 Identities=22% Similarity=0.270 Sum_probs=221.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHHccCCccccccc
Q 002280 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSIL 540 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~LnG~~l~Gr~L 540 (943)
+..++|||+|||..+|+++|+++|+.||.+.. + ..+.+..++.++|||||+|.+.++|.+||.|+|..|.|++|
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~---v---~i~~d~~~~~skg~afVeF~~~e~A~~Al~l~g~~~~g~~i 160 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRD---V---QCIKDRNSRRSKGVAYVEFYDVESVIKALALTGQMLLGRPI 160 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeE---E---EEeecCCCCCcceEEEEEECCHHHHHHHHHhCCCEECCeee
Confidence 45689999999999999999999999885322 2 24455667889999999999999999999999999999999
Q ss_pred cccCCcc-----------c-----eeEEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecC--CCCCCEEEEeecChhH
Q 002280 541 KIKRPKE-----------F-----VEVAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLV 602 (943)
Q Consensus 541 kV~rp~d-----------~-----~~~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~--~~skG~aFVeF~~~e~ 602 (943)
.|..... . ...+|||+|||..+++++|.++|++||.|..|.|+.+. +.++|||||+|.+.++
T Consensus 161 ~v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~ 240 (457)
T TIGR01622 161 IVQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEE 240 (457)
T ss_pred EEeecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHH
Confidence 9874321 0 01389999999999999999999999999999998874 4679999999999999
Q ss_pred HHHHHHHhCCCccCCeEEEEEEcccCCCcCC---------------C----------------CC---CCCCC-------
Q 002280 603 TPKAIAGLNGLKVGGQVLTAVQAVLDGSIMD---------------N----------------SG---NPPFH------- 641 (943)
Q Consensus 603 A~kAl~~LnG~~~~gr~L~V~~A~~~~~~~~---------------~----------------~~---~~~~~------- 641 (943)
|.+|+..|||..|.|+.|.|.+|........ . .+ ...+.
T Consensus 241 A~~A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (457)
T TIGR01622 241 AKEALEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIA 320 (457)
T ss_pred HHHHHHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhh
Confidence 9999999999999999999999642110000 0 00 00000
Q ss_pred -------------CCC---------CC----cCCC--CCCCceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhcCCCC
Q 002280 642 -------------GIP---------KH----ALPL--LKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGS 693 (943)
Q Consensus 642 -------------~ip---------~~----~~~~--~~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskFG~ 693 (943)
.++ .. ..+. ...+++||+|.||+++.++ .++.++.+|++||+++|++||.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~--~~~~~~~~~~~dv~~e~~k~G~ 398 (457)
T TIGR01622 321 LMQKLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATE--EEPNFDNEILDDVKEECSKYGG 398 (457)
T ss_pred hhccccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCccc--ccchHHHHHHHHHHHHHHhcCC
Confidence 000 00 0000 2367899999999999887 5889999999999999999999
Q ss_pred eEEEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCceEEEEec
Q 002280 694 VKSVNVVKYGDSNISTIQACEGNENTASAGVGQNLTNDETNEKGERLEEVT 744 (943)
Q Consensus 694 V~~V~I~r~~~g~~~G~~FVeF~~~e~A~~Ai~~LnGr~~~~k~~~v~~~~ 744 (943)
|+.|.|+.+. ..|++||+|.+.++|.+|+++|||++|+++.+.+....
T Consensus 399 v~~v~v~~~~---~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~ 446 (457)
T TIGR01622 399 VVHIYVDTKN---SAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVV 446 (457)
T ss_pred eeEEEEeCCC---CceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEc
Confidence 9999998643 46889999999999999999999999999999987654
No 5
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=3e-36 Score=352.74 Aligned_cols=337 Identities=11% Similarity=0.109 Sum_probs=215.5
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDG 629 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~ 629 (943)
+|||+|||..+++++|+++|++||.|..|.|+.+ ++.++|||||+|.+.++|.+||. |+|..|.|++|.|..+....
T Consensus 91 ~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~~~~~ 169 (457)
T TIGR01622 91 TVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSSQAEK 169 (457)
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeecchhh
Confidence 8999999999999999999999999999999987 45679999999999999999996 99999999999998764332
Q ss_pred CcCCCCCCCCCCCCCCCcCCCCCCCceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhcCCCCeEEEEEecCC-CCCcc
Q 002280 630 SIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYG-DSNIS 708 (943)
Q Consensus 630 ~~~~~~~~~~~~~ip~~~~~~~~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskFG~V~~V~I~r~~-~g~~~ 708 (943)
........ .. +.....+.+|+|.||....+ .++|+++|++||.|..|.|+.+. .|..+
T Consensus 170 ~~~~~~~~----~~-----~~~~p~~~~l~v~nl~~~~t------------e~~l~~~f~~~G~i~~v~~~~d~~~g~~~ 228 (457)
T TIGR01622 170 NRAAKAAT----HQ-----PGDIPNFLKLYVGNLHFNIT------------EQELRQIFEPFGDIEDVQLHRDPETGRSK 228 (457)
T ss_pred hhhhhccc----cc-----CCCCCCCCEEEEcCCCCCCC------------HHHHHHHHHhcCCeEEEEEEEcCCCCccc
Confidence 21110000 00 00112368899999975333 26889999999999999999875 45889
Q ss_pred eeEEEEeCCHHHHHHHHHHhCCCccCCCceEEEEeccccccccchhhhccchhhHhhhcccccccCCCCC--------CC
Q 002280 709 TIQACEGNENTASAGVGQNLTNDETNEKGERLEEVTDHKSIKNNELEILNDSKEVMEAGEVNNVKDNRPA--------SG 780 (943)
Q Consensus 709 G~~FVeF~~~e~A~~Ai~~LnGr~~~~k~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~--------~~ 780 (943)
|||||+|.+.++|..|+..|||..|.++.+.|....+.......... . .+........ ..
T Consensus 229 g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~----------~--~~~~~~~~~~~~~~~~~~~~ 296 (457)
T TIGR01622 229 GFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQDSTYLLDAANT----------F--EDIDKQQQMGKNLNTEEREQ 296 (457)
T ss_pred eEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccCCCccccchhh----------h--ccccccccCCcCCCccchHH
Confidence 99999999999999999999999999999999887643211111000 0 0000000000 00
Q ss_pred CCCCC----------cccccccchhhhhhhhccCCccccccCCCccc---cCCCCCCCCCCCCccccccccccccccccc
Q 002280 781 TMGDE----------PSQLCELDTDMAVEYQARDSTSEIVSQGVPTQ---VNTLKDSPCAHDDKVTCNIQLEHMSEENKS 847 (943)
Q Consensus 781 lm~~~----------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 847 (943)
+|... +.....-...|..... .+. .....+.. ..................+...|+++.|||
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~ 371 (457)
T TIGR01622 297 LMEKLDRDDGDGGLLIPGTGSKIALMQKLQR--DGI---IDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMF 371 (457)
T ss_pred HHHhhccCCCCccccCCCccchhhhhccccc--ccc---ccccccccccccccccccCCCCCCcccCCCCCcEEEEecCC
Confidence 00000 0000000000000000 000 00000000 000000000000000011334555555554
Q ss_pred ccccccccccccCCCccccCccccccccccccc----CCCCCCCCCCCCCccCCceEEEEecCHHHHHHHHHHhhcCccC
Q 002280 848 SAKEDLNLEEVNGNSEAFTGASNEMGMQSSAVE----NGDNENQDPNQGHIFEPGCVFVEYMRAEASCMAAHSLHRRLFD 923 (943)
Q Consensus 848 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~----~~~~~~~~~d~~~i~~~g~v~v~f~~~~~a~~a~~~l~gr~f~ 923 (943)
.+ .....+.|..+|.+|+.+ -|.+.+..+.... ..|+|||+|.+.++|++|+++||||||+
T Consensus 372 ~~-------------~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~--~~G~~fV~F~~~e~A~~A~~~lnGr~f~ 436 (457)
T TIGR01622 372 DP-------------ATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKN--SAGKIYLKFSSVDAALAAFQALNGRYFG 436 (457)
T ss_pred CC-------------cccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCC--CceeEEEEECCHHHHHHHHHHhcCcccC
Confidence 43 333344455544444444 4777666665433 3699999999999999999999999999
Q ss_pred CceEEEEeechhhHHhhcC
Q 002280 924 DRIVAVEYIPLNLYRARFS 942 (943)
Q Consensus 924 ~~~v~~~y~~~~~y~~~fp 942 (943)
||.|+|.|++.+.|...||
T Consensus 437 gr~i~~~~~~~~~~~~~~~ 455 (457)
T TIGR01622 437 GKMITAAFVVNDVYDMSCL 455 (457)
T ss_pred CeEEEEEEEcHHHHHhhcC
Confidence 9999999999999999997
No 6
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=9e-36 Score=357.39 Aligned_cols=245 Identities=18% Similarity=0.236 Sum_probs=205.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcccccccccc
Q 002280 465 RLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSILKIK 543 (943)
Q Consensus 465 tLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~LkV~ 543 (943)
+|||||||+++||++|.++|+.||.+.. | ..+.+..+++++|||||+|.+.++|.+||. ||+..|.|++|+|.
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~---v---~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~ 75 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLS---V---RVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIM 75 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEE---E---EEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEee
Confidence 6999999999999999999999985322 2 244555678899999999999999999998 99999999999998
Q ss_pred CCccc------eeEEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec-CCCCCCEEEEeecChhHHHHHHHHhCCCccC
Q 002280 544 RPKEF------VEVAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN-EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVG 616 (943)
Q Consensus 544 rp~d~------~~~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d-~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~ 616 (943)
+.... ...+|||+|||..+++++|+++|+.||.|..|+|..+ .+.++|||||+|.+.++|.+|+..|||..+.
T Consensus 76 ~s~~~~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~ 155 (562)
T TIGR01628 76 WSQRDPSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLN 155 (562)
T ss_pred cccccccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEec
Confidence 64311 1128999999999999999999999999999999887 4568999999999999999999999999999
Q ss_pred CeEEEEEEcccCCCcCCCCCCCCCCCCCCCcCCCCCCCceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhcCCCCeEE
Q 002280 617 GQVLTAVQAVLDGSIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKS 696 (943)
Q Consensus 617 gr~L~V~~A~~~~~~~~~~~~~~~~~ip~~~~~~~~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskFG~V~~ 696 (943)
|+.|.|....+...... ........|+|.|+....+ .++|+++|++||.|++
T Consensus 156 ~~~i~v~~~~~~~~~~~----------------~~~~~~~~l~V~nl~~~~t------------ee~L~~~F~~fG~i~~ 207 (562)
T TIGR01628 156 DKEVYVGRFIKKHEREA----------------APLKKFTNLYVKNLDPSVN------------EDKLRELFAKFGEITS 207 (562)
T ss_pred CceEEEecccccccccc----------------ccccCCCeEEEeCCCCcCC------------HHHHHHHHHhcCCEEE
Confidence 99999976543222110 0012345688999965333 2689999999999999
Q ss_pred EEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCCccC----CCceEEEEe
Q 002280 697 VNVVKYGDSNISTIQACEGNENTASAGVGQNLTNDETN----EKGERLEEV 743 (943)
Q Consensus 697 V~I~r~~~g~~~G~~FVeF~~~e~A~~Ai~~LnGr~~~----~k~~~v~~~ 743 (943)
|.|.++..+..+|||||+|.+.++|.+|+..|||..|. ++.+.+...
T Consensus 208 ~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a 258 (562)
T TIGR01628 208 AAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRA 258 (562)
T ss_pred EEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecc
Confidence 99999988999999999999999999999999999999 776666443
No 7
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=5.1e-35 Score=330.70 Aligned_cols=265 Identities=15% Similarity=0.197 Sum_probs=210.6
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcccccccc
Q 002280 463 MRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSILK 541 (943)
Q Consensus 463 ~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~Lk 541 (943)
..+|||+|||+.+|+++|+++|..||.+..+ ..+.+..++.++|||||+|.+.++|..||. |||..|.|++|+
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v------~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~ 76 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESC------KLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIK 76 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEE------EEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEE
Confidence 5689999999999999999999999864332 234455668899999999999999999998 999999999999
Q ss_pred ccCCc--c--ceeEEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCcc
Q 002280 542 IKRPK--E--FVEVAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKV 615 (943)
Q Consensus 542 V~rp~--d--~~~~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~ 615 (943)
|.... . ....+|||+|||..+++++|.++|+.||.|..+.++.+ .+.++|||||+|.+.++|..|+..|||..+
T Consensus 77 v~~a~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~ 156 (352)
T TIGR01661 77 VSYARPSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTP 156 (352)
T ss_pred EEeecccccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCcc
Confidence 97432 2 22348999999999999999999999999999998877 456799999999999999999999999998
Q ss_pred CC--eEEEEEEcccCCCcCCC-------------CCCC------------CCC---------------------------
Q 002280 616 GG--QVLTAVQAVLDGSIMDN-------------SGNP------------PFH--------------------------- 641 (943)
Q Consensus 616 ~g--r~L~V~~A~~~~~~~~~-------------~~~~------------~~~--------------------------- 641 (943)
.| ..|.|.++......... .... ++.
T Consensus 157 ~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (352)
T TIGR01661 157 SGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVA 236 (352)
T ss_pred CCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccc
Confidence 77 57888887533210000 0000 000
Q ss_pred --CCCCC-----------------cCCCCCCCceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhcCCCCeEEEEEecC
Q 002280 642 --GIPKH-----------------ALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKY 702 (943)
Q Consensus 642 --~ip~~-----------------~~~~~~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskFG~V~~V~I~r~ 702 (943)
..+.. ..+.....+.+|+|.||....+. ++|+++|++||.|++|.|+++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e------------~~L~~~F~~fG~v~~v~i~~d 304 (352)
T TIGR01661 237 QQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDE------------TVLWQLFGPFGAVQNVKIIRD 304 (352)
T ss_pred cccccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCH------------HHHHHHHHhCCCeEEEEEeEc
Confidence 00000 00001223457999999764432 689999999999999999988
Q ss_pred C-CCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCceEEEEecc
Q 002280 703 G-DSNISTIQACEGNENTASAGVGQNLTNDETNEKGERLEEVTD 745 (943)
Q Consensus 703 ~-~g~~~G~~FVeF~~~e~A~~Ai~~LnGr~~~~k~~~v~~~~~ 745 (943)
. .+.++|||||+|.+.++|.+|+.+|||..|+++.+.|.....
T Consensus 305 ~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~ 348 (352)
T TIGR01661 305 LTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTN 348 (352)
T ss_pred CCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEccC
Confidence 6 888999999999999999999999999999999999988764
No 8
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=1.3e-34 Score=339.89 Aligned_cols=164 Identities=24% Similarity=0.332 Sum_probs=143.6
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccc
Q 002280 458 QSNRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFS 536 (943)
Q Consensus 458 ~~~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~ 536 (943)
++....++|||||||+.+|+++|+++|..||.+..+ ..+.+..++.++|||||+|.+.++|..||. |||..|.
T Consensus 102 ~a~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV------~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~ 175 (612)
T TIGR01645 102 QALAIMCRVYVGSISFELREDTIRRAFDPFGPIKSI------NMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLG 175 (612)
T ss_pred hhhcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEE------EEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEe
Confidence 344567899999999999999999999999863322 234555678999999999999999999998 9999999
Q ss_pred cccccccCCccce---------------eEEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecC--CCCCCEEEEeecC
Q 002280 537 GSILKIKRPKEFV---------------EVAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVD 599 (943)
Q Consensus 537 Gr~LkV~rp~d~~---------------~~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~--~~skG~aFVeF~~ 599 (943)
|+.|+|.++.... ..+|||+|||..+++++|+++|+.||.|..++|.++. +.++|||||+|.+
T Consensus 176 GR~IkV~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~ 255 (612)
T TIGR01645 176 GRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNN 255 (612)
T ss_pred cceeeecccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECC
Confidence 9999998765321 1289999999999999999999999999999999884 4679999999999
Q ss_pred hhHHHHHHHHhCCCccCCeEEEEEEccc
Q 002280 600 QLVTPKAIAGLNGLKVGGQVLTAVQAVL 627 (943)
Q Consensus 600 ~e~A~kAl~~LnG~~~~gr~L~V~~A~~ 627 (943)
.++|.+|+..|||..|+|+.|.|.++.+
T Consensus 256 ~e~A~kAI~amNg~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 256 LQSQSEAIASMNLFDLGGQYLRVGKCVT 283 (612)
T ss_pred HHHHHHHHHHhCCCeeCCeEEEEEecCC
Confidence 9999999999999999999999988653
No 9
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=1.3e-33 Score=334.90 Aligned_cols=177 Identities=13% Similarity=0.183 Sum_probs=132.4
Q ss_pred EEEEecCCCCCCHHHHHHHHhhc------------CCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeE
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAF------------GPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQV 619 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~f------------G~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~ 619 (943)
+|||+|||+.+++++|.++|..| +.|..+.+ ...+|||||+|.+.++|..|| .|+|+.|.|+.
T Consensus 177 ~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~----~~~kg~afVeF~~~e~A~~Al-~l~g~~~~g~~ 251 (509)
T TIGR01642 177 RLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI----NKEKNFAFLEFRTVEEATFAM-ALDSIIYSNVF 251 (509)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE----CCCCCEEEEEeCCHHHHhhhh-cCCCeEeeCce
Confidence 89999999999999999999985 23444443 235899999999999999999 59999999999
Q ss_pred EEEEEcccCCCcCCCC----CCCCCCCCCCC----cCCCCCCCceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhcCC
Q 002280 620 LTAVQAVLDGSIMDNS----GNPPFHGIPKH----ALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARF 691 (943)
Q Consensus 620 L~V~~A~~~~~~~~~~----~~~~~~~ip~~----~~~~~~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskF 691 (943)
|.|............. ...+-...+.. .......+...|+|.||....+. ++|+++|+.|
T Consensus 252 l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~------------~~l~~~f~~~ 319 (509)
T TIGR01642 252 LKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGE------------DQIKELLESF 319 (509)
T ss_pred eEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCH------------HHHHHHHHhc
Confidence 9997543222111000 00000000000 00111234678999999653332 6899999999
Q ss_pred CCeEEEEEecC-CCCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCceEEEEecc
Q 002280 692 GSVKSVNVVKY-GDSNISTIQACEGNENTASAGVGQNLTNDETNEKGERLEEVTD 745 (943)
Q Consensus 692 G~V~~V~I~r~-~~g~~~G~~FVeF~~~e~A~~Ai~~LnGr~~~~k~~~v~~~~~ 745 (943)
|.|+.|.|+++ ..|..+|||||+|.+.++|..|+..|||..|+++.+.|..+..
T Consensus 320 G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~ 374 (509)
T TIGR01642 320 GDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACV 374 (509)
T ss_pred CCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECcc
Confidence 99999999887 4678899999999999999999999999999999998877654
No 10
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=100.00 E-value=1.4e-34 Score=323.50 Aligned_cols=272 Identities=20% Similarity=0.271 Sum_probs=223.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHHccCCcccccc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSI 539 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~LnG~~l~Gr~ 539 (943)
++..+|||+-.|+..+++.+|.+||+.+|.+.. + ..|.+.+.+.++|.|||+|.+.+.+..||.|.|+.+.|.+
T Consensus 176 ERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrd---V---riI~Dr~s~rskgi~Yvef~D~~sVp~aiaLsGqrllg~p 249 (549)
T KOG0147|consen 176 ERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRD---V---RIIGDRNSRRSKGIAYVEFCDEQSVPLAIALSGQRLLGVP 249 (549)
T ss_pred HHhHHHHHHHHHhhcCCchhHHHHHHhhcCcce---e---EeeccccchhhcceeEEEEecccchhhHhhhcCCcccCce
Confidence 567889999999999999999999999886332 2 3566777889999999999999999999999999999999
Q ss_pred ccccCCc----------------cceeE--EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecC
Q 002280 540 LKIKRPK----------------EFVEV--AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVD 599 (943)
Q Consensus 540 LkV~rp~----------------d~~~~--~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~ 599 (943)
|.|+.+. ....+ .|||+||.+++++++|+.+|+.||.|..|.+.++ ++.++||+||+|.+
T Consensus 250 v~vq~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~ 329 (549)
T KOG0147|consen 250 VIVQLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVN 329 (549)
T ss_pred eEecccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEec
Confidence 9998432 11111 4899999999999999999999999999999998 78889999999999
Q ss_pred hhHHHHHHHHhCCCccCCeEEEEEEcccC-----C-Cc-------------CCCCC-----------C------------
Q 002280 600 QLVTPKAIAGLNGLKVGGQVLTAVQAVLD-----G-SI-------------MDNSG-----------N------------ 637 (943)
Q Consensus 600 ~e~A~kAl~~LnG~~~~gr~L~V~~A~~~-----~-~~-------------~~~~~-----------~------------ 637 (943)
.++|.+|+.+|||..|.|+.|+|...... + .+ .+..+ .
T Consensus 330 ~~~ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l 409 (549)
T KOG0147|consen 330 KEDARKALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISAL 409 (549)
T ss_pred HHHHHHHHHHhccceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHH
Confidence 99999999999999999999998753210 0 00 00000 0
Q ss_pred ---------------CC-CCCCCCCcCCCCCCCceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhcCCCCeEEEEEec
Q 002280 638 ---------------PP-FHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVK 701 (943)
Q Consensus 638 ---------------~~-~~~ip~~~~~~~~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskFG~V~~V~I~r 701 (943)
.. -...|..+.|....||.|+.|.|||+|.+.+ .+.|-++|.+||.++|++||+|.+|.|.+
T Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstet--e~n~d~eI~edV~Eec~k~g~v~hi~vd~ 487 (549)
T KOG0147|consen 410 LLLAKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTET--EPNWDQEIREDVIEECGKHGKVCHIFVDK 487 (549)
T ss_pred HhccccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCccccc--CcchhhHHHHHHHHHHHhcCCeeEEEEcc
Confidence 00 0011222223334789999999999999985 78889999999999999999999999998
Q ss_pred CCCCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCceEEEEe
Q 002280 702 YGDSNISTIQACEGNENTASAGVGQNLTNDETNEKGERLEEV 743 (943)
Q Consensus 702 ~~~g~~~G~~FVeF~~~e~A~~Ai~~LnGr~~~~k~~~v~~~ 743 (943)
+.. |++||.|.+.+.|..|+.+|||+||.++.|++...
T Consensus 488 ns~----g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~ 525 (549)
T KOG0147|consen 488 NSA----GCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYL 525 (549)
T ss_pred CCC----ceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEe
Confidence 653 67799999999999999999999999999997654
No 11
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=5.8e-32 Score=318.00 Aligned_cols=254 Identities=19% Similarity=0.157 Sum_probs=198.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH---ccCCccccc
Q 002280 462 PMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC---CDGCSFSGS 538 (943)
Q Consensus 462 ~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~---LnG~~l~Gr 538 (943)
++++|||+|||+.+|+++|+++|++|| .|..+.+-.+++||||+|.+.++|..|+. +++..|.|+
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG------------~V~~v~i~~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~ 68 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFG------------PVSYVMMLPGKRQALVEFEDEESAKACVNFATSVPIYIRGQ 68 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcC------------CeeEEEEECCCCEEEEEeCchHHHHHHHHHhhcCCceEcCe
Confidence 368999999999999999999999998 45556555689999999999999999998 478999999
Q ss_pred cccccCCcc------c----------eeEEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhH
Q 002280 539 ILKIKRPKE------F----------VEVAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLV 602 (943)
Q Consensus 539 ~LkV~rp~d------~----------~~~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~ 602 (943)
+|.|..... . ...+|||+||++.+++++|+++|+.||.|..|.|+++. ++|+|||+|.+.++
T Consensus 69 ~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~--~~~~afVef~~~~~ 146 (481)
T TIGR01649 69 PAFFNYSTSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN--NVFQALVEFESVNS 146 (481)
T ss_pred EEEEEecCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC--CceEEEEEECCHHH
Confidence 999974321 0 01279999999999999999999999999999987753 35799999999999
Q ss_pred HHHHHHHhCCCccCC--eEEEEEEcccCCCcC-----C--------CCC-------------CCCC--------------
Q 002280 603 TPKAIAGLNGLKVGG--QVLTAVQAVLDGSIM-----D--------NSG-------------NPPF-------------- 640 (943)
Q Consensus 603 A~kAl~~LnG~~~~g--r~L~V~~A~~~~~~~-----~--------~~~-------------~~~~-------------- 640 (943)
|.+|+..|||..|.| +.|.|.++.+..... . ..+ ...+
T Consensus 147 A~~A~~~Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 226 (481)
T TIGR01649 147 AQHAKAALNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYS 226 (481)
T ss_pred HHHHHHHhcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccc
Confidence 999999999999854 588888876532110 0 000 0000
Q ss_pred -C-----------CCCC--------------Cc--------CCCCCCCceEEEeccCCCcCCCCCCChHHHHHHHHHHHH
Q 002280 641 -H-----------GIPK--------------HA--------LPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRL 686 (943)
Q Consensus 641 -~-----------~ip~--------------~~--------~~~~~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre 686 (943)
. .++. .. .+....++.+|+|.||... .+ + .++|++
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~-~v---t-------~~~L~~ 295 (481)
T TIGR01649 227 SHGGPLAPLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQE-KV---N-------CDRLFN 295 (481)
T ss_pred cCCCCCCcccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCC-CC---C-------HHHHHH
Confidence 0 0000 00 0011347789999999631 11 1 268999
Q ss_pred HhcCCCCeEEEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCceEEEEec
Q 002280 687 ECARFGSVKSVNVVKYGDSNISTIQACEGNENTASAGVGQNLTNDETNEKGERLEEVT 744 (943)
Q Consensus 687 ~fskFG~V~~V~I~r~~~g~~~G~~FVeF~~~e~A~~Ai~~LnGr~~~~k~~~v~~~~ 744 (943)
+|+.||.|.+|+|+++. +|+|||+|.+.++|..|+..|||..|.++.+.|..+.
T Consensus 296 lF~~yG~V~~vki~~~~----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~ 349 (481)
T TIGR01649 296 LFCVYGNVERVKFMKNK----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSK 349 (481)
T ss_pred HHHhcCCeEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcc
Confidence 99999999999999863 5899999999999999999999999999999997653
No 12
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.98 E-value=2.6e-31 Score=312.08 Aligned_cols=172 Identities=15% Similarity=0.193 Sum_probs=142.4
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDG 629 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~ 629 (943)
+|||+|||+.+++++|+++|++||.|..|.|+.+ ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.+.....
T Consensus 109 rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~~p 188 (612)
T TIGR01645 109 RVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMP 188 (612)
T ss_pred EEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccccccc
Confidence 8999999999999999999999999999999887 56789999999999999999999999999999999998543211
Q ss_pred CcCCCCCCCCCCCCCCCcCCCCCCCceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhcCCCCeEEEEEecCC-CCCcc
Q 002280 630 SIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYG-DSNIS 708 (943)
Q Consensus 630 ~~~~~~~~~~~~~ip~~~~~~~~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskFG~V~~V~I~r~~-~g~~~ 708 (943)
... +... ...........|+|.||....+ .++|+++|++||.|++|.|+++. .+..+
T Consensus 189 ~a~------~~~~----~~~~~~~~~~rLfVgnLp~~vt------------eedLk~lFs~FG~I~svrl~~D~~tgksK 246 (612)
T TIGR01645 189 QAQ------PIID----MVQEEAKKFNRIYVASVHPDLS------------ETDIKSVFEAFGEIVKCQLARAPTGRGHK 246 (612)
T ss_pred ccc------cccc----cccccccccceEEeecCCCCCC------------HHHHHHHHhhcCCeeEEEEEecCCCCCcC
Confidence 100 0000 0000112356799999964322 26899999999999999999875 56789
Q ss_pred eeEEEEeCCHHHHHHHHHHhCCCccCCCceEEEEecc
Q 002280 709 TIQACEGNENTASAGVGQNLTNDETNEKGERLEEVTD 745 (943)
Q Consensus 709 G~~FVeF~~~e~A~~Ai~~LnGr~~~~k~~~v~~~~~ 745 (943)
|||||+|.+.++|.+|+..|||..|+++.+.|...+.
T Consensus 247 GfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~ 283 (612)
T TIGR01645 247 GYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 283 (612)
T ss_pred CeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCC
Confidence 9999999999999999999999999999999988875
No 13
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.98 E-value=4.5e-31 Score=269.83 Aligned_cols=265 Identities=18% Similarity=0.250 Sum_probs=215.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccccccc
Q 002280 462 PMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSIL 540 (943)
Q Consensus 462 ~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~L 540 (943)
....|+|..||.++|+++|+.+|...| .|+.+++|.+..+|++-||+||.|.++++|++|+. |||..|..++|
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiG------eiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTI 113 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIG------EIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTI 113 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhccc------ceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceE
Confidence 345799999999999999999997644 56666788999999999999999999999999999 99999999999
Q ss_pred cccC--Ccc--ceeEEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCc
Q 002280 541 KIKR--PKE--FVEVAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLK 614 (943)
Q Consensus 541 kV~r--p~d--~~~~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~ 614 (943)
+|.. |.. .....|||.+||..+|..+|.++|++||.|..-+|+.| ++.++|.+||.|....+|+.||..|||..
T Consensus 114 KVSyARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~ 193 (360)
T KOG0145|consen 114 KVSYARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQK 193 (360)
T ss_pred EEEeccCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCC
Confidence 9984 442 22349999999999999999999999999988777777 67789999999999999999999999998
Q ss_pred cCCe--EEEEEEcccCCCcCCCC--------------CC-----------------------CC-----CCCCCCCcCCC
Q 002280 615 VGGQ--VLTAVQAVLDGSIMDNS--------------GN-----------------------PP-----FHGIPKHALPL 650 (943)
Q Consensus 615 ~~gr--~L~V~~A~~~~~~~~~~--------------~~-----------------------~~-----~~~ip~~~~~~ 650 (943)
-.|. +|.|.+|.......... +. .| +.++.....+.
T Consensus 194 P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~ 273 (360)
T KOG0145|consen 194 PSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPG 273 (360)
T ss_pred CCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCC
Confidence 8664 79999885432211000 00 00 00011111222
Q ss_pred CCCCceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhcCCCCeEEEEEecCCC-CCcceeEEEEeCCHHHHHHHHHHhC
Q 002280 651 LKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYGD-SNISTIQACEGNENTASAGVGQNLT 729 (943)
Q Consensus 651 ~~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskFG~V~~V~I~r~~~-g~~~G~~FVeF~~~e~A~~Ai~~Ln 729 (943)
......||+|+||-...+. .-|.++|.+||.|.+|+|.++.+ ..++|||||.+.+.++|..||..||
T Consensus 274 ~~~~g~ciFvYNLspd~de------------~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLN 341 (360)
T KOG0145|consen 274 GPGGGWCIFVYNLSPDADE------------SILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLN 341 (360)
T ss_pred CCCCeeEEEEEecCCCchH------------hHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhc
Confidence 3445789999999664443 24678899999999999999965 7799999999999999999999999
Q ss_pred CCccCCCceEEEEec
Q 002280 730 NDETNEKGERLEEVT 744 (943)
Q Consensus 730 Gr~~~~k~~~v~~~~ 744 (943)
|..++++.+.|+-..
T Consensus 342 Gy~lg~rvLQVsFKt 356 (360)
T KOG0145|consen 342 GYRLGDRVLQVSFKT 356 (360)
T ss_pred CccccceEEEEEEec
Confidence 999999999887654
No 14
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.97 E-value=3.1e-30 Score=309.67 Aligned_cols=261 Identities=16% Similarity=0.178 Sum_probs=209.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcccccccc
Q 002280 463 MRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSILK 541 (943)
Q Consensus 463 ~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~Lk 541 (943)
..+|||+|||.++|+++|+++|+.||.+..+ .|.....+.++|||||+|.+.++|..|+. |||..+.|+.|.
T Consensus 88 ~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~-------~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~ 160 (562)
T TIGR01628 88 VGNIFVKNLDKSVDNKALFDTFSKFGNILSC-------KVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVY 160 (562)
T ss_pred CCceEEcCCCccCCHHHHHHHHHhcCCccee-------EeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEE
Confidence 4579999999999999999999999864332 22222356789999999999999999999 999999999999
Q ss_pred ccCCccc---------eeEEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec-CCCCCCEEEEeecChhHHHHHHHHhC
Q 002280 542 IKRPKEF---------VEVAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN-EDHEEPCAFIEYVDQLVTPKAIAGLN 611 (943)
Q Consensus 542 V~rp~d~---------~~~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d-~~~skG~aFVeF~~~e~A~kAl~~Ln 611 (943)
|...... ...+|||+|||..+++++|+++|+.||.|..+.+..+ .+.++|||||+|.+.++|.+|+..|+
T Consensus 161 v~~~~~~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~ 240 (562)
T TIGR01628 161 VGRFIKKHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMN 240 (562)
T ss_pred EeccccccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhC
Confidence 8643211 1127999999999999999999999999999999887 45679999999999999999999999
Q ss_pred CCccC----CeEEEEEEcccCCCcCCCCCCCCCCCCCCCcCCCCCCCceEEEeccCCCcCCCCCCChHHHHHHHHHHHHH
Q 002280 612 GLKVG----GQVLTAVQAVLDGSIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLE 687 (943)
Q Consensus 612 G~~~~----gr~L~V~~A~~~~~~~~~~~~~~~~~ip~~~~~~~~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~ 687 (943)
|..|. |+.|.|.++........... ..+...... .........|+|.||....+ .++|+++
T Consensus 241 g~~i~~~~~g~~l~v~~a~~k~er~~~~~-~~~~~~~~~--~~~~~~~~~l~V~nl~~~~~------------~~~L~~~ 305 (562)
T TIGR01628 241 GKKIGLAKEGKKLYVGRAQKRAEREAELR-RKFEELQQE--RKMKAQGVNLYVKNLDDTVT------------DEKLREL 305 (562)
T ss_pred CcEecccccceeeEeecccChhhhHHHHH-hhHHhhhhh--hhcccCCCEEEEeCCCCccC------------HHHHHHH
Confidence 99999 99999988755432210000 000000000 00123456799999865333 2689999
Q ss_pred hcCCCCeEEEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCceEEEEecc
Q 002280 688 CARFGSVKSVNVVKYGDSNISTIQACEGNENTASAGVGQNLTNDETNEKGERLEEVTD 745 (943)
Q Consensus 688 fskFG~V~~V~I~r~~~g~~~G~~FVeF~~~e~A~~Ai~~LnGr~~~~k~~~v~~~~~ 745 (943)
|++||.|++|+|+.+..|..+|||||+|.+.++|.+|+..|||..|+++.+.|..+..
T Consensus 306 F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~ 363 (562)
T TIGR01628 306 FSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQR 363 (562)
T ss_pred HHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccC
Confidence 9999999999999998899999999999999999999999999999999999987654
No 15
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.97 E-value=2e-29 Score=295.90 Aligned_cols=239 Identities=15% Similarity=0.214 Sum_probs=194.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccc-ccc
Q 002280 462 PMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFS-GSI 539 (943)
Q Consensus 462 ~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~-Gr~ 539 (943)
..++|||+|||+++||++|+++|++||.+..+ .++++ .++.++|||||+|.+.++|..||. ||+..|. |+.
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~v------rl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~ 129 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYEL------RLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRL 129 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEE------EEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcc
Confidence 35799999999999999999999999864432 23445 678999999999999999999999 9998884 788
Q ss_pred ccccCCccceeEEEEEecCCCCCCHHHHHHHHhhcCC-eeEEEEEe---cCCCCCCEEEEeecChhHHHHHHHHhCC--C
Q 002280 540 LKIKRPKEFVEVAIFIGGISRTLSSKMVMEIVCAFGP-LKAYHFEV---NEDHEEPCAFIEYVDQLVTPKAIAGLNG--L 613 (943)
Q Consensus 540 LkV~rp~d~~~~~LfV~NLp~~~teedL~e~Fs~fG~-I~~v~l~~---d~~~skG~aFVeF~~~e~A~kAl~~LnG--~ 613 (943)
|.|....+ ..+|||+|||..+++++|.++|++++. +..+.+.. +...++|||||+|.+.++|..|+..|+. .
T Consensus 130 l~V~~S~~--~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki 207 (578)
T TIGR01648 130 LGVCISVD--NCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRI 207 (578)
T ss_pred cccccccc--CceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccce
Confidence 87765543 238999999999999999999999863 33433322 2345799999999999999999988864 4
Q ss_pred ccCCeEEEEEEcccCCCcCCCCCCCCCCCCCCCcCCCCCCCceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhcCC--
Q 002280 614 KVGGQVLTAVQAVLDGSIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARF-- 691 (943)
Q Consensus 614 ~~~gr~L~V~~A~~~~~~~~~~~~~~~~~ip~~~~~~~~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskF-- 691 (943)
.+.|+.|.|.++.+...... ......++|+|.||....+. ++|+++|++|
T Consensus 208 ~l~Gr~I~VdwA~p~~~~d~----------------~~~~~~k~LfVgNL~~~~te------------e~L~~~F~~f~~ 259 (578)
T TIGR01648 208 QLWGHVIAVDWAEPEEEVDE----------------DVMAKVKILYVRNLMTTTTE------------EIIEKSFSEFKP 259 (578)
T ss_pred EecCceEEEEeecccccccc----------------cccccccEEEEeCCCCCCCH------------HHHHHHHHhcCC
Confidence 67899999999876432110 01124678999999653332 6789999999
Q ss_pred CCeEEEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCceEEEEec
Q 002280 692 GSVKSVNVVKYGDSNISTIQACEGNENTASAGVGQNLTNDETNEKGERLEEVT 744 (943)
Q Consensus 692 G~V~~V~I~r~~~g~~~G~~FVeF~~~e~A~~Ai~~LnGr~~~~k~~~v~~~~ 744 (943)
|.|+.|.+++ +||||+|.+.++|.+|+..|||..|.++.+.|..+.
T Consensus 260 G~I~rV~~~r-------gfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Ak 305 (578)
T TIGR01648 260 GKVERVKKIR-------DYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAK 305 (578)
T ss_pred CceEEEEeec-------CeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcc
Confidence 9999998864 489999999999999999999999999999998764
No 16
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=4.6e-29 Score=272.18 Aligned_cols=240 Identities=18% Similarity=0.201 Sum_probs=198.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcc-ccc
Q 002280 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSF-SGS 538 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l-~Gr 538 (943)
...+.||||.||.++.|++|.-||+..|.+..+ .++++...|.++|||||.|.+.++|+.|+. ||+.+| .|+
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~el------RLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK 154 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELVPLFEKIGKIYEL------RLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGK 154 (506)
T ss_pred CCCceEEecCCCccccchhhHHHHHhccceeeE------EEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCC
Confidence 446789999999999999999999998875443 367787889999999999999999999999 999877 788
Q ss_pred cccccCCccceeEEEEEecCCCCCCHHHHHHHHhhcCC-eeEEEEEec---CCCCCCEEEEeecChhHHHHHHHHhC-C-
Q 002280 539 ILKIKRPKEFVEVAIFIGGISRTLSSKMVMEIVCAFGP-LKAYHFEVN---EDHEEPCAFIEYVDQLVTPKAIAGLN-G- 612 (943)
Q Consensus 539 ~LkV~rp~d~~~~~LfV~NLp~~~teedL~e~Fs~fG~-I~~v~l~~d---~~~skG~aFVeF~~~e~A~kAl~~Ln-G- 612 (943)
.|.|.-.-+ ..+|||||||..+++++|.+.|++.++ |..|.|... ...++|||||+|.+...|..|-..|- |
T Consensus 155 ~igvc~Sva--n~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~ 232 (506)
T KOG0117|consen 155 LLGVCVSVA--NCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGK 232 (506)
T ss_pred EeEEEEeee--cceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCc
Confidence 888763322 129999999999999999999999874 555666544 44689999999999999999987764 3
Q ss_pred CccCCeEEEEEEcccCCCcCCCCCCCCCCCCCCCcCCCCCCCceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhcCCC
Q 002280 613 LKVGGQVLTAVQAVLDGSIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFG 692 (943)
Q Consensus 613 ~~~~gr~L~V~~A~~~~~~~~~~~~~~~~~ip~~~~~~~~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskFG 692 (943)
+++.|..+.|.||.|....... .-...++|+|.||....+ .|.|+.+|+.||
T Consensus 233 ~klwgn~~tVdWAep~~e~ded----------------~ms~VKvLYVRNL~~~tT------------eE~lk~~F~~~G 284 (506)
T KOG0117|consen 233 IKLWGNAITVDWAEPEEEPDED----------------TMSKVKVLYVRNLMESTT------------EETLKKLFNEFG 284 (506)
T ss_pred eeecCCcceeeccCcccCCChh----------------hhhheeeeeeeccchhhh------------HHHHHHHHHhcc
Confidence 5689999999999875432111 123468999999964322 267889999999
Q ss_pred CeEEEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCceEEEEe
Q 002280 693 SVKSVNVVKYGDSNISTIQACEGNENTASAGVGQNLTNDETNEKGERLEEV 743 (943)
Q Consensus 693 ~V~~V~I~r~~~g~~~G~~FVeF~~~e~A~~Ai~~LnGr~~~~k~~~v~~~ 743 (943)
.|+.|+.+++ ||||.|.+.++|.+||+.|||.++.+.++.+..+
T Consensus 285 ~veRVkk~rD-------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLA 328 (506)
T KOG0117|consen 285 KVERVKKPRD-------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLA 328 (506)
T ss_pred ceEEeecccc-------eeEEeecchHHHHHHHHHhcCceecCceEEEEec
Confidence 9999999975 8999999999999999999999999999988665
No 17
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=1.6e-28 Score=260.61 Aligned_cols=267 Identities=22% Similarity=0.333 Sum_probs=211.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcccccc
Q 002280 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~ 539 (943)
.--++||||.|.+.+-|+.|+..|.+||.+..++ -..+..|++.+|||||||.-+|.|..|++ |||..++|+.
T Consensus 111 aiMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSIn------MSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRN 184 (544)
T KOG0124|consen 111 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSIN------MSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRN 184 (544)
T ss_pred HHhHheeeeeeEEEechHHHHhhccCCCCcceee------cccccccccccceEEEEEeCcHHHHHHHHHhccccccCcc
Confidence 3457999999999999999999999999754432 33556789999999999999999999999 9999999999
Q ss_pred ccccCCccceeE---------------EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecC--CCCCCEEEEeecChhH
Q 002280 540 LKIKRPKEFVEV---------------AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLV 602 (943)
Q Consensus 540 LkV~rp~d~~~~---------------~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~--~~skG~aFVeF~~~e~ 602 (943)
|+|.+|...... +|||..+.++++++||+.+|+.||+|..|.|.+.+ ..++||+||+|.+..+
T Consensus 185 iKVgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs 264 (544)
T KOG0124|consen 185 IKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQS 264 (544)
T ss_pred ccccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccc
Confidence 999999864332 99999999999999999999999999999998873 4579999999999999
Q ss_pred HHHHHHHhCCCccCCeEEEEEEcccCCCc------------------------------------CCCCC----------
Q 002280 603 TPKAIAGLNGLKVGGQVLTAVQAVLDGSI------------------------------------MDNSG---------- 636 (943)
Q Consensus 603 A~kAl~~LnG~~~~gr~L~V~~A~~~~~~------------------------------------~~~~~---------- 636 (943)
...|+..||=+.++|+-|+|..+...... ....+
T Consensus 265 ~~eAiasMNlFDLGGQyLRVGk~vTPP~aLl~Pat~s~~P~aaaVAaAAaTAKi~A~eAvAg~avlg~~G~~~~vSpA~~ 344 (544)
T KOG0124|consen 265 QSEAIASMNLFDLGGQYLRVGKCVTPPDALLQPATVSAIPAAAAVAAAAATAKIMAAEAVAGSAVLGTVGAPGLVSPAPR 344 (544)
T ss_pred hHHHhhhcchhhcccceEecccccCCCchhcCCCCcccCchHHHHHHHHHHHHHHHHHHhccCCcccccCCccccCcccc
Confidence 99999999999999999999754211100 00000
Q ss_pred -----------------------CCCC-CCCCCC------cCCC------------------------------------
Q 002280 637 -----------------------NPPF-HGIPKH------ALPL------------------------------------ 650 (943)
Q Consensus 637 -----------------------~~~~-~~ip~~------~~~~------------------------------------ 650 (943)
..|. +.+|.. ..|.
T Consensus 345 aa~p~~~l~qa~~a~~~pgvi~~vtP~~P~iP~~i~p~g~v~P~LA~ppT~g~L~kkkeKe~eelqpkl~~~~~L~~QE~ 424 (544)
T KOG0124|consen 345 AAQPLGTLPQAVMAAQAPGVITGVTPARPPIPVTIPPVGVVNPILASPPTLGLLEKKKEKEEEELQPKLERPEMLSEQEH 424 (544)
T ss_pred ccCCCCCccccchhccCCceeccCCCCCCCCCccCCCcceechhhcCCCchhhcchhhhhhHhhhcccccCHHHhhhhhC
Confidence 0000 001100 0000
Q ss_pred -----------------CCCCceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCC-----cc
Q 002280 651 -----------------LKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYGDSN-----IS 708 (943)
Q Consensus 651 -----------------~~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskFG~V~~V~I~r~~~g~-----~~ 708 (943)
-...++|++|.|+++|.++ | +.+..+|+++|.+||.|..|.|.....+. +-
T Consensus 425 msI~G~sARhlvMqkLmR~~~S~VivLRNMV~P~Di---D----e~LegEi~EECgKfG~V~rViI~nekq~e~edaeii 497 (544)
T KOG0124|consen 425 MSISGSSARHLVMQKLMRKQESTVIVLRNMVDPKDI---D----EDLEGEITEECGKFGAVNRVIIYNEKQGEEEDAEII 497 (544)
T ss_pred ccccCccHHHHHHHHHhccccCcEEEEeccCChhhh---h----hHHHHHHHHHHhcccceeEEEEEecccccccchhhh
Confidence 0224789999999999997 2 33557899999999999999998754333 23
Q ss_pred eeEEEEeCCHHHHHHHHHHhCCCccCCCceEE
Q 002280 709 TIQACEGNENTASAGVGQNLTNDETNEKGERL 740 (943)
Q Consensus 709 G~~FVeF~~~e~A~~Ai~~LnGr~~~~k~~~v 740 (943)
-.+||+|....++.+|+++|+||+|++++.+.
T Consensus 498 VKIFVefS~~~e~~rak~ALdGRfFgGr~VvA 529 (544)
T KOG0124|consen 498 VKIFVEFSIASETHRAKQALDGRFFGGRKVVA 529 (544)
T ss_pred heeeeeechhhHHHHHHHhhccceecCceeeh
Confidence 36799999999999999999999999998664
No 18
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.96 E-value=7.4e-27 Score=274.87 Aligned_cols=246 Identities=21% Similarity=0.289 Sum_probs=186.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeee--ecCCCeeeEEeCCHHHHHHHHH-ccCCccccc--
Q 002280 464 RRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVI--QREKGQAFVEFLTAEDASAALC-CDGCSFSGS-- 538 (943)
Q Consensus 464 rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~--~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr-- 538 (943)
.+|||+||++.+|+++|.++|+.||.+ ..+.+ ....++|||+|.+.++|.+|+. |||..|.|.
T Consensus 97 ~~v~v~nl~~~vt~~~L~~~F~~~G~V------------~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~ 164 (481)
T TIGR01649 97 LRVIVENPMYPITLDVLYQIFNPYGKV------------LRIVTFTKNNVFQALVEFESVNSAQHAKAALNGADIYNGCC 164 (481)
T ss_pred EEEEEcCCCCCCCHHHHHHHHhccCCE------------EEEEEEecCCceEEEEEECCHHHHHHHHHHhcCCcccCCce
Confidence 479999999999999999999999853 33333 2234699999999999999999 999988652
Q ss_pred cccccCCc--------------c---------------------------------------------------------
Q 002280 539 ILKIKRPK--------------E--------------------------------------------------------- 547 (943)
Q Consensus 539 ~LkV~rp~--------------d--------------------------------------------------------- 547 (943)
.|+|...+ +
T Consensus 165 ~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 244 (481)
T TIGR01649 165 TLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPP 244 (481)
T ss_pred EEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCc
Confidence 33332100 0
Q ss_pred ----------------------c------eeEEEEEecCCC-CCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeec
Q 002280 548 ----------------------F------VEVAIFIGGISR-TLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYV 598 (943)
Q Consensus 548 ----------------------~------~~~~LfV~NLp~-~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~ 598 (943)
+ ...+|||+|||. .+++++|.++|+.||.|..|+|+.+ .+|+|||+|.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~---~~g~afV~f~ 321 (481)
T TIGR01649 245 HGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN---KKETALIEMA 321 (481)
T ss_pred ccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC---CCCEEEEEEC
Confidence 0 012899999998 6999999999999999999999886 5799999999
Q ss_pred ChhHHHHHHHHhCCCccCCeEEEEEEcccCCCcCCCC-----CCC---CCCCC-------CCC-cCCCCCCCceEEEecc
Q 002280 599 DQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGSIMDNS-----GNP---PFHGI-------PKH-ALPLLKKPTEVLKLKN 662 (943)
Q Consensus 599 ~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~~~~~~~-----~~~---~~~~i-------p~~-~~~~~~~ps~vL~L~N 662 (943)
+.++|..|+..|||..|.|++|.|.++.......... +.. .+.+. +.. .......|+.+|+|.|
T Consensus 322 ~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~N 401 (481)
T TIGR01649 322 DPYQAQLALTHLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSN 401 (481)
T ss_pred CHHHHHHHHHHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEec
Confidence 9999999999999999999999999875432211100 000 00000 000 0001235789999999
Q ss_pred CCCcCCCCCCChHHHHHHHHHHHHHhcCCCC--eEEEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCc
Q 002280 663 VFNPEGFSSLSELEVEEVLEDVRLECARFGS--VKSVNVVKYGDSNISTIQACEGNENTASAGVGQNLTNDETNEKG 737 (943)
Q Consensus 663 lv~~~~l~~i~~~~~~ei~eDlre~fskFG~--V~~V~I~r~~~g~~~G~~FVeF~~~e~A~~Ai~~LnGr~~~~k~ 737 (943)
|....+ .++|+++|+.||. |+.|+|.....+ .+++|||+|.+.++|..|+..|||..|.++.
T Consensus 402 Lp~~~t------------ee~L~~lF~~~G~~~i~~ik~~~~~~~-~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~ 465 (481)
T TIGR01649 402 IPLSVS------------EEDLKELFAENGVHKVKKFKFFPKDNE-RSKMGLLEWESVEDAVEALIALNHHQLNEPN 465 (481)
T ss_pred CCCCCC------------HHHHHHHHHhcCCccceEEEEecCCCC-cceeEEEEcCCHHHHHHHHHHhcCCccCCCC
Confidence 954322 2688999999998 899998654433 5789999999999999999999999999886
No 19
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.95 E-value=2.1e-26 Score=260.51 Aligned_cols=161 Identities=11% Similarity=0.161 Sum_probs=139.1
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDG 629 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~ 629 (943)
+|||+|||..+++++|+++|+.||+|..|+|+++ ++.++|||||+|.+.++|.+||..|||..|.|+.|.|.++.+..
T Consensus 5 ~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~~~ 84 (352)
T TIGR01661 5 NLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARPSS 84 (352)
T ss_pred EEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecccc
Confidence 8999999999999999999999999999999987 45689999999999999999999999999999999999886532
Q ss_pred CcCCCCCCCCCCCCCCCcCCCCCCCceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhcCCCCeEEEEEecCC-CCCcc
Q 002280 630 SIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYG-DSNIS 708 (943)
Q Consensus 630 ~~~~~~~~~~~~~ip~~~~~~~~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskFG~V~~V~I~r~~-~g~~~ 708 (943)
. ......|+|.||...... ++|+.+|++||.|..+.|+.+. .+..+
T Consensus 85 ~---------------------~~~~~~l~v~~l~~~~~~------------~~l~~~f~~~G~i~~~~~~~~~~~~~~~ 131 (352)
T TIGR01661 85 D---------------------SIKGANLYVSGLPKTMTQ------------HELESIFSPFGQIITSRILSDNVTGLSK 131 (352)
T ss_pred c---------------------ccccceEEECCccccCCH------------HHHHHHHhccCCEEEEEEEecCCCCCcC
Confidence 1 112456899999654332 6889999999999999998764 56788
Q ss_pred eeEEEEeCCHHHHHHHHHHhCCCccCCCceEEEEecc
Q 002280 709 TIQACEGNENTASAGVGQNLTNDETNEKGERLEEVTD 745 (943)
Q Consensus 709 G~~FVeF~~~e~A~~Ai~~LnGr~~~~k~~~v~~~~~ 745 (943)
|||||+|.+.++|..|++.|||..+.+....+.....
T Consensus 132 g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a 168 (352)
T TIGR01661 132 GVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFA 168 (352)
T ss_pred cEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEEC
Confidence 9999999999999999999999999887666555544
No 20
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=2.7e-26 Score=258.83 Aligned_cols=241 Identities=18% Similarity=0.209 Sum_probs=197.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcccccccccc
Q 002280 465 RLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSILKIK 543 (943)
Q Consensus 465 tLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~LkV~ 543 (943)
.|||| +.+||.+|.++|+++|.+..+ ..|.+. + +-|||||.|.++++|++||. ||...+.|++|+|.
T Consensus 3 sl~vg---~~v~e~~l~~~f~~~~~v~s~------rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim 70 (369)
T KOG0123|consen 3 SLYVG---PDVTEAMLFDKFSPAGPVLSI------RVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIM 70 (369)
T ss_pred ceecC---CcCChHHHHHHhcccCCceeE------EEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEee
Confidence 58999 999999999999998865442 356666 5 99999999999999999999 99999999999998
Q ss_pred CCccceeEEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEE
Q 002280 544 RPKEFVEVAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAV 623 (943)
Q Consensus 544 rp~d~~~~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~ 623 (943)
+..... ..|||.||+..++...|.++|+.||.|.+|+|..+...++|| ||+|.+.+.|.+|+..|||..+.|+.|.|.
T Consensus 71 ~s~rd~-~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg 148 (369)
T KOG0123|consen 71 WSQRDP-SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVG 148 (369)
T ss_pred hhccCC-ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEe
Confidence 654322 249999999999999999999999999999999998779999 999999999999999999999999999998
Q ss_pred EcccCCCcCCCCCCCCCCCCCCCcCCCCCCCceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhcCCCCeEEEEEecCC
Q 002280 624 QAVLDGSIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYG 703 (943)
Q Consensus 624 ~A~~~~~~~~~~~~~~~~~ip~~~~~~~~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskFG~V~~V~I~r~~ 703 (943)
.............. .. ..-+. +++.|.. .+. + .+.|...|..||.|.++.|+.+.
T Consensus 149 ~~~~~~er~~~~~~-~~-----------~~~t~-v~vk~~~--~~~---~-------~~~l~~~f~~~g~i~s~~v~~~~ 203 (369)
T KOG0123|consen 149 LFERKEEREAPLGE-YK-----------KRFTN-VYVKNLE--EDS---T-------DEELKDLFSAYGSITSVAVMRDS 203 (369)
T ss_pred eccchhhhcccccc-hh-----------hhhhh-hheeccc--ccc---c-------hHHHHHhhcccCcceEEEEeecC
Confidence 77554332211111 00 01122 2233332 111 1 14678899999999999999999
Q ss_pred CCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCceEEEEec
Q 002280 704 DSNISTIQACEGNENTASAGVGQNLTNDETNEKGERLEEVT 744 (943)
Q Consensus 704 ~g~~~G~~FVeF~~~e~A~~Ai~~LnGr~~~~k~~~v~~~~ 744 (943)
.+...+|+||.|.+.++|..|+..|+|..+.++.+-|....
T Consensus 204 ~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aq 244 (369)
T KOG0123|consen 204 IGKSKGFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQ 244 (369)
T ss_pred CCCCCCccceeecChhHHHHHHHhccCCcCCccceeecccc
Confidence 99999999999999999999999999999998888776554
No 21
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=2.3e-25 Score=247.63 Aligned_cols=264 Identities=18% Similarity=0.201 Sum_probs=202.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccccccccc
Q 002280 464 RRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSILKI 542 (943)
Q Consensus 464 rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~LkV 542 (943)
.||||++||+.+|.++|-++|+.+|.+.+. ..|.+...+.++|||||.|.-.++++.|+. +++..|.|+.|.|
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~------~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v 79 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHA------VVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNV 79 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCccee------EEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccc
Confidence 699999999999999999999998854331 122333445789999999999999999999 9999999999988
Q ss_pred cCCcc--------------------c--------e--eEEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCC-CCCC
Q 002280 543 KRPKE--------------------F--------V--EVAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNED-HEEP 591 (943)
Q Consensus 543 ~rp~d--------------------~--------~--~~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~-~skG 591 (943)
..++. . . ..+|.|.|||+.+...+|..+|+.||.|..|.|++..+ .-.|
T Consensus 80 ~~A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcG 159 (678)
T KOG0127|consen 80 DPAKKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCG 159 (678)
T ss_pred ccccccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccc
Confidence 73210 0 0 11899999999999999999999999999999987643 3469
Q ss_pred EEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCCCcCC-----------------------C--------------
Q 002280 592 CAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGSIMD-----------------------N-------------- 634 (943)
Q Consensus 592 ~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~~~~~-----------------------~-------------- 634 (943)
||||+|....+|.+||..|||.+|.|++|.|.||.+...-.. .
T Consensus 160 FaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~ 239 (678)
T KOG0127|consen 160 FAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDS 239 (678)
T ss_pred eEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccc
Confidence 999999999999999999999999999999999876431100 0
Q ss_pred ------CCCC--------------CCCCC--CCCc-----C-----CCCCCCceEEEeccCCCcCCCCCCChHHHHHHHH
Q 002280 635 ------SGNP--------------PFHGI--PKHA-----L-----PLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLE 682 (943)
Q Consensus 635 ------~~~~--------------~~~~i--p~~~-----~-----~~~~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~e 682 (943)
+++. .+... +... . +.......+|+|.||....+. +
T Consensus 240 edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tE------------E 307 (678)
T KOG0127|consen 240 EDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTE------------E 307 (678)
T ss_pred cccccccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccH------------H
Confidence 0000 00000 0000 0 001112378999999764443 6
Q ss_pred HHHHHhcCCCCeEEEEEecC-CCCCcceeEEEEeCCHHHHHHHHHHh-----CC-CccCCCceEEEEecc
Q 002280 683 DVRLECARFGSVKSVNVVKY-GDSNISTIQACEGNENTASAGVGQNL-----TN-DETNEKGERLEEVTD 745 (943)
Q Consensus 683 Dlre~fskFG~V~~V~I~r~-~~g~~~G~~FVeF~~~e~A~~Ai~~L-----nG-r~~~~k~~~v~~~~~ 745 (943)
.|.++|++||.|..+.|+.+ .++.+.|.|||.|.+..+|.+||.+. .| ..+.++.++|..++-
T Consensus 308 el~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~ 377 (678)
T KOG0127|consen 308 ELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVT 377 (678)
T ss_pred HHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccc
Confidence 78999999999999998876 57889999999999999999999988 23 566788888877764
No 22
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.93 E-value=2.9e-25 Score=229.35 Aligned_cols=224 Identities=17% Similarity=0.213 Sum_probs=173.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHHccCCcccccc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSI 539 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~LnG~~l~Gr~ 539 (943)
+..++|||||||...+||+-|..||++.|. |..|.+ .|. .
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~------------v~~~k~---------i~~-------------------e 42 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGS------------VTKTKV---------IFD-------------------E 42 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhccc------------ccccee---------ehh-------------------h
Confidence 456899999999999999999999999774 333322 111 2
Q ss_pred ccccCCcc---------ceeEEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHH
Q 002280 540 LKIKRPKE---------FVEVAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIA 608 (943)
Q Consensus 540 LkV~rp~d---------~~~~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~ 608 (943)
|+|.++.. ...-.+||+.|...++-++|++.|.+||.|..++|++| ++.++||+||.|-+.++|+.||.
T Consensus 43 ~~v~wa~~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~ 122 (321)
T KOG0148|consen 43 LKVNWATAPGNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQ 122 (321)
T ss_pred hccccccCcccCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHH
Confidence 33332211 11228999999999999999999999999999999999 56789999999999999999999
Q ss_pred HhCCCccCCeEEEEEEcccCCCcCCCCCCCCCCCCCCCcCCCCCCCceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHh
Q 002280 609 GLNGLKVGGQVLTAVQAVLDGSIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLEC 688 (943)
Q Consensus 609 ~LnG~~~~gr~L~V~~A~~~~~~~~~~~~~~~~~ip~~~~~~~~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~f 688 (943)
.|||.+|++|.|+-.||..+....... ...|..+-- ......+.+++.|+.. .| + .++|+..|
T Consensus 123 ~MnGqWlG~R~IRTNWATRKp~e~n~~-~ltfdeV~N----Qssp~NtsVY~G~I~~--~l---t-------e~~mr~~F 185 (321)
T KOG0148|consen 123 QMNGQWLGRRTIRTNWATRKPSEMNGK-PLTFDEVYN----QSSPDNTSVYVGNIAS--GL---T-------EDLMRQTF 185 (321)
T ss_pred HhCCeeeccceeeccccccCccccCCC-CccHHHHhc----cCCCCCceEEeCCcCc--cc---c-------HHHHHHhc
Confidence 999999999999999997655221111 111111111 1123355678888865 23 1 25789999
Q ss_pred cCCCCeEEEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCceEEEEecc
Q 002280 689 ARFGSVKSVNVVKYGDSNISTIQACEGNENTASAGVGQNLTNDETNEKGERLEEVTD 745 (943)
Q Consensus 689 skFG~V~~V~I~r~~~g~~~G~~FVeF~~~e~A~~Ai~~LnGr~~~~k~~~v~~~~~ 745 (943)
++||.|..|.|.+ .+||+||.|++.|.|..||-.|||.++++...+-.+.-.
T Consensus 186 s~fG~I~EVRvFk-----~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe 237 (321)
T KOG0148|consen 186 SPFGPIQEVRVFK-----DQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKE 237 (321)
T ss_pred ccCCcceEEEEec-----ccceEEEEecchhhHHHHHHHhcCceeCceEEEEecccc
Confidence 9999999999999 489999999999999999999999999998877666543
No 23
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=2.4e-24 Score=234.35 Aligned_cols=162 Identities=24% Similarity=0.340 Sum_probs=137.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccC-Ccccc-
Q 002280 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDG-CSFSG- 537 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG-~~l~G- 537 (943)
...-+||||.||..+||.+|+++|++||.+..+ ++++|..++.++|||||.|.+.++|..|+. |++ +.|-|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~ei------nl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~ 105 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEI------NLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGM 105 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEE------EeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCC
Confidence 445689999999999999999999999975443 467888999999999999999999999999 777 56766
Q ss_pred -ccccccCCcc---c--eeEEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecC-CCCCCEEEEeecChhHHHHHHHHh
Q 002280 538 -SILKIKRPKE---F--VEVAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE-DHEEPCAFIEYVDQLVTPKAIAGL 610 (943)
Q Consensus 538 -r~LkV~rp~d---~--~~~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~-~~skG~aFVeF~~~e~A~kAl~~L 610 (943)
.+|.|..+.. . ...+|||+-|+..++|.+|+++|++||.|++|.|+++. +.++|||||+|.+.+.|..||++|
T Consensus 106 ~~pvqvk~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ 185 (510)
T KOG0144|consen 106 HHPVQVKYADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKAL 185 (510)
T ss_pred CcceeecccchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhh
Confidence 4566654321 1 13399999999999999999999999999999999984 679999999999999999999999
Q ss_pred CCCc-cCC--eEEEEEEcccC
Q 002280 611 NGLK-VGG--QVLTAVQAVLD 628 (943)
Q Consensus 611 nG~~-~~g--r~L~V~~A~~~ 628 (943)
||.. +.| .+|.|.+|.+.
T Consensus 186 ng~~tmeGcs~PLVVkFADtq 206 (510)
T KOG0144|consen 186 NGTQTMEGCSQPLVVKFADTQ 206 (510)
T ss_pred ccceeeccCCCceEEEecccC
Confidence 9954 554 58999987643
No 24
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.92 E-value=9.4e-24 Score=236.98 Aligned_cols=164 Identities=20% Similarity=0.276 Sum_probs=141.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccccc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr 538 (943)
....++|||+|||+++|+++|+++|..||.+..+ ..+.+..++.++|||||+|.+.++|..||+ |||+.|.++
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v------~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr 177 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTC------RIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNK 177 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEE------EEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCc
Confidence 3457899999999999999999999998863322 244556778899999999999999999998 999999999
Q ss_pred cccccCCcc----ceeEEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCC
Q 002280 539 ILKIKRPKE----FVEVAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNG 612 (943)
Q Consensus 539 ~LkV~rp~d----~~~~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG 612 (943)
+|+|..... ....+|||+|||..+++++|+++|++||.|..+.|+.+ ++..+|||||+|.+.++|.+||..||+
T Consensus 178 ~i~V~~a~p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng 257 (346)
T TIGR01659 178 RLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNN 257 (346)
T ss_pred eeeeecccccccccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 999986542 22338999999999999999999999999999999887 456789999999999999999999999
Q ss_pred CccCC--eEEEEEEcccCC
Q 002280 613 LKVGG--QVLTAVQAVLDG 629 (943)
Q Consensus 613 ~~~~g--r~L~V~~A~~~~ 629 (943)
..|.+ ++|.|.+|....
T Consensus 258 ~~~~g~~~~l~V~~a~~~~ 276 (346)
T TIGR01659 258 VIPEGGSQPLTVRLAEEHG 276 (346)
T ss_pred CccCCCceeEEEEECCccc
Confidence 98865 789999886543
No 25
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=2.1e-24 Score=229.42 Aligned_cols=172 Identities=16% Similarity=0.197 Sum_probs=136.3
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDG 629 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~ 629 (943)
+||||.|.+.+.|+.|+..|..||+|++|.+..| ++.++|||||+|+-++.|+.|++.|||..++|+.|+|.+...-.
T Consensus 115 RvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNmp 194 (544)
T KOG0124|consen 115 RVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNMP 194 (544)
T ss_pred heeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCCc
Confidence 8999999999999999999999999999998777 57789999999999999999999999999999999997331100
Q ss_pred CcCCCCCCCCCCCCCCCcCCCCCCCceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhcCCCCeEEEEEecCCCC-Ccc
Q 002280 630 SIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYGDS-NIS 708 (943)
Q Consensus 630 ~~~~~~~~~~~~~ip~~~~~~~~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskFG~V~~V~I~r~~~g-~~~ 708 (943)
+ .+.+-.. .+...+.-.-+++..+.. +| + .+||+.+|+.||+|+.|++.+.+.+ ..+
T Consensus 195 Q---------AQpiID~-vqeeAk~fnRiYVaSvHp--DL---S-------e~DiKSVFEAFG~I~~C~LAr~pt~~~Hk 252 (544)
T KOG0124|consen 195 Q---------AQPIIDM-VQEEAKKFNRIYVASVHP--DL---S-------ETDIKSVFEAFGEIVKCQLARAPTGRGHK 252 (544)
T ss_pred c---------cchHHHH-HHHHHHhhheEEeeecCC--Cc---c-------HHHHHHHHHhhcceeeEEeeccCCCCCcc
Confidence 0 0000000 000012233456666544 33 1 2689999999999999999998654 589
Q ss_pred eeEEEEeCCHHHHHHHHHHhCCCccCCCceEEEEecc
Q 002280 709 TIQACEGNENTASAGVGQNLTNDETNEKGERLEEVTD 745 (943)
Q Consensus 709 G~~FVeF~~~e~A~~Ai~~LnGr~~~~k~~~v~~~~~ 745 (943)
|||||+|.+...-..|+..||-..+++..+.|..++.
T Consensus 253 GyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vT 289 (544)
T KOG0124|consen 253 GYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVT 289 (544)
T ss_pred ceeeEEeccccchHHHhhhcchhhcccceEecccccC
Confidence 9999999999999999999999999998888766653
No 26
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=6.6e-22 Score=220.32 Aligned_cols=188 Identities=13% Similarity=0.206 Sum_probs=153.4
Q ss_pred EEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCC--CCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccC
Q 002280 551 VAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNED--HEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLD 628 (943)
Q Consensus 551 ~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~--~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~ 628 (943)
.+|||++||+.++.++|.++|+.+|+|..+.++.+.+ .++||+||+|.-.++++.|+..+++..|+|+.|.|..|.+.
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 4899999999999999999999999999999998865 46999999999999999999999999999999999988765
Q ss_pred CCcCC-CCCCC-----CCCCCCCCcCCCCCCCceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhcCCCCeEEEEEecC
Q 002280 629 GSIMD-NSGNP-----PFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKY 702 (943)
Q Consensus 629 ~~~~~-~~~~~-----~~~~ip~~~~~~~~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskFG~V~~V~I~r~ 702 (943)
..... ..+.. ++.+ +.........|-.-|+|.||....-- .||+.+|+.||.|..|.||+.
T Consensus 86 ~r~e~~~~~e~~~veK~~~q-~~~~k~~v~~~k~rLIIRNLPf~~k~------------~dLk~vFs~~G~V~Ei~IP~k 152 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQ-KRPTKAKVDLPKWRLIIRNLPFKCKK------------PDLKNVFSNFGKVVEIVIPRK 152 (678)
T ss_pred ccchhcccccchhhhccccc-CCcchhhccCccceEEeecCCcccCc------------HHHHHHHhhcceEEEEEcccC
Confidence 43321 11110 1111 00001112334677999999764443 589999999999999999999
Q ss_pred CCCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCceEEEEecccccccc
Q 002280 703 GDSNISTIQACEGNENTASAGVGQNLTNDETNEKGERLEEVTDHKSIKN 751 (943)
Q Consensus 703 ~~g~~~G~~FVeF~~~e~A~~Ai~~LnGr~~~~k~~~v~~~~~~~~~~~ 751 (943)
..|...|||||.|.+..+|..|+..|||..|.++++-|.++++......
T Consensus 153 ~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ 201 (678)
T KOG0127|consen 153 KDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYED 201 (678)
T ss_pred CCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecccccccc
Confidence 8888889999999999999999999999999999999999987554443
No 27
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=1e-22 Score=229.89 Aligned_cols=260 Identities=16% Similarity=0.166 Sum_probs=203.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcccccc
Q 002280 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~ 539 (943)
+.+..|||.||++.++...|.++|+.||.+..+. |.... ..++|| ||+|.+.++|.+|+. +||..+.|+.
T Consensus 74 rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~k-------v~~~~-~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kk 144 (369)
T KOG0123|consen 74 RDPSLVFIKNLDESIDNKSLYDTFSEFGNILSCK-------VATDE-NGSKGY-FVQFESEESAKKAIEKLNGMLLNGKK 144 (369)
T ss_pred cCCceeeecCCCcccCcHHHHHHHHhhcCeeEEE-------EEEcC-CCceee-EEEeCCHHHHHHHHHHhcCcccCCCe
Confidence 3344499999999999999999999999654421 11111 238999 999999999999999 9999999999
Q ss_pred ccccCCcc--------ce----eEEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecC-CCCCCEEEEeecChhHHHHH
Q 002280 540 LKIKRPKE--------FV----EVAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE-DHEEPCAFIEYVDQLVTPKA 606 (943)
Q Consensus 540 LkV~rp~d--------~~----~~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~-~~skG~aFVeF~~~e~A~kA 606 (943)
|.|..... .. ...++|.|++..++++.|.++|+.||.|.++.++.+. +.++||+||.|.+.++|..|
T Consensus 145 i~vg~~~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~a 224 (369)
T KOG0123|consen 145 IYVGLFERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKA 224 (369)
T ss_pred eEEeeccchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHH
Confidence 99874221 11 1178999999999999999999999999999999884 45799999999999999999
Q ss_pred HHHhCCCccCCeEEEEEEcccCCCcCCCCCCCCCCCCCCCcCCCCCCCceEEEeccCCCcCCCCCCChHHHHHHHHHHHH
Q 002280 607 IAGLNGLKVGGQVLTAVQAVLDGSIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRL 686 (943)
Q Consensus 607 l~~LnG~~~~gr~L~V~~A~~~~~~~~~~~~~~~~~ip~~~~~~~~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre 686 (943)
+..|+|..+.+..+.|..+..........- .++.. ....+........|++.|+...... +.|+.
T Consensus 225 v~~l~~~~~~~~~~~V~~aqkk~e~~~~l~-~~~~~--~~~~~~~~~~~~nl~vknld~~~~~------------e~L~~ 289 (369)
T KOG0123|consen 225 VETLNGKIFGDKELYVGRAQKKSEREAELK-RKFEQ--EFAKRSVSLQGANLYVKNLDETLSD------------EKLRK 289 (369)
T ss_pred HHhccCCcCCccceeecccccchhhHHHHh-hhhHh--hhhhccccccccccccccCccccch------------hHHHH
Confidence 999999999999999987755221110000 00000 0011111234556888885432221 56888
Q ss_pred HhcCCCCeEEEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCceEEEEec
Q 002280 687 ECARFGSVKSVNVVKYGDSNISTIQACEGNENTASAGVGQNLTNDETNEKGERLEEVT 744 (943)
Q Consensus 687 ~fskFG~V~~V~I~r~~~g~~~G~~FVeF~~~e~A~~Ai~~LnGr~~~~k~~~v~~~~ 744 (943)
.|+.||+|.++.|..+..|...||+||+|...++|..|+..|||+.+.++.+.+.+..
T Consensus 290 ~f~~~GeI~s~kv~~~~~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~q 347 (369)
T KOG0123|consen 290 IFSSFGEITSAKVMVDENGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQ 347 (369)
T ss_pred HHhcccceeeEEEEeccCCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHh
Confidence 9999999999999999999999999999999999999999999999999998876554
No 28
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.88 E-value=8.7e-22 Score=231.81 Aligned_cols=184 Identities=17% Similarity=0.189 Sum_probs=138.2
Q ss_pred HHHHHHHHH-ccCCcccccccccc---CCccce------eEEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec-CCCC
Q 002280 521 AEDASAALC-CDGCSFSGSILKIK---RPKEFV------EVAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN-EDHE 589 (943)
Q Consensus 521 ~edA~~Al~-LnG~~l~Gr~LkV~---rp~d~~------~~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d-~~~s 589 (943)
.+.|.+||. ++|..+........ .|..|. ..+|||+|||..+++++|.++|++||.|..|+|++| ++.+
T Consensus 19 ~~~a~~a~~~~~gy~~~~~~g~r~~g~Pp~~~~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~s 98 (578)
T TIGR01648 19 DEAALKALLERTGYTLVQENGQRKYGGPPPGWSGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQN 98 (578)
T ss_pred cHHHHHHHHHhhCccccccCCcccCCCCCCcccCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCc
Confidence 467777877 88865533322211 222221 239999999999999999999999999999999988 5678
Q ss_pred CCEEEEeecChhHHHHHHHHhCCCccC-CeEEEEEEcccCCCcCCCCCCCCCCCCCCCcCCCCCCCceEEEeccCCCcCC
Q 002280 590 EPCAFIEYVDQLVTPKAIAGLNGLKVG-GQVLTAVQAVLDGSIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEG 668 (943)
Q Consensus 590 kG~aFVeF~~~e~A~kAl~~LnG~~~~-gr~L~V~~A~~~~~~~~~~~~~~~~~ip~~~~~~~~~ps~vL~L~Nlv~~~~ 668 (943)
+|||||+|.+.++|.+||..|||..|. |+.|.|..+ ...+.|+|.||....+
T Consensus 99 RGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S---------------------------~~~~rLFVgNLP~~~T 151 (578)
T TIGR01648 99 RGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCIS---------------------------VDNCRLFVGGIPKNKK 151 (578)
T ss_pred cceEEEEeCCHHHHHHHHHHcCCCeecCCcccccccc---------------------------ccCceeEeecCCcchh
Confidence 999999999999999999999999884 677666532 1245699999865433
Q ss_pred CCCCChHHHHHHHHHHHHHhcCCCC-eEEEEEecC--CCCCcceeEEEEeCCHHHHHHHHHHhCCC--ccCCCceEEEEe
Q 002280 669 FSSLSELEVEEVLEDVRLECARFGS-VKSVNVVKY--GDSNISTIQACEGNENTASAGVGQNLTND--ETNEKGERLEEV 743 (943)
Q Consensus 669 l~~i~~~~~~ei~eDlre~fskFG~-V~~V~I~r~--~~g~~~G~~FVeF~~~e~A~~Ai~~LnGr--~~~~k~~~v~~~ 743 (943)
. ++|.++|++|+. |+.+.+... ..+..+||+||+|.+.++|..|+..|+.. .+.++.+.|.+.
T Consensus 152 e------------eeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~VdwA 219 (578)
T TIGR01648 152 R------------EEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAVDWA 219 (578)
T ss_pred h------------HHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEEEee
Confidence 2 678889999863 555554332 34567899999999999999999988643 456777766554
No 29
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.88 E-value=6.9e-22 Score=221.98 Aligned_cols=160 Identities=13% Similarity=0.185 Sum_probs=137.4
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDG 629 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~ 629 (943)
+|||+|||+.+++++|+++|+.||.|..|+|+.+ ++.++|||||+|.+.++|.+||..|||..|.+++|.|.++.+..
T Consensus 109 ~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p~~ 188 (346)
T TIGR01659 109 NLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYARPGG 188 (346)
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecccccc
Confidence 9999999999999999999999999999999887 45679999999999999999999999999999999999876532
Q ss_pred CcCCCCCCCCCCCCCCCcCCCCCCCceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhcCCCCeEEEEEecCC-CCCcc
Q 002280 630 SIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYG-DSNIS 708 (943)
Q Consensus 630 ~~~~~~~~~~~~~ip~~~~~~~~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskFG~V~~V~I~r~~-~g~~~ 708 (943)
.. .....|+|.||....+ .++|+++|++||.|+.|.|+++. .+..+
T Consensus 189 ~~---------------------~~~~~lfV~nLp~~vt------------ee~L~~~F~~fG~V~~v~i~~d~~tg~~k 235 (346)
T TIGR01659 189 ES---------------------IKDTNLYVTNLPRTIT------------DDQLDTIFGKYGQIVQKNILRDKLTGTPR 235 (346)
T ss_pred cc---------------------cccceeEEeCCCCccc------------HHHHHHHHHhcCCEEEEEEeecCCCCccc
Confidence 11 1234689999954322 26899999999999999999874 77888
Q ss_pred eeEEEEeCCHHHHHHHHHHhCCCccCCCceEEEEec
Q 002280 709 TIQACEGNENTASAGVGQNLTNDETNEKGERLEEVT 744 (943)
Q Consensus 709 G~~FVeF~~~e~A~~Ai~~LnGr~~~~k~~~v~~~~ 744 (943)
||+||+|.+.++|++|++.|||..|.+....+.+.+
T Consensus 236 G~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 236 GVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred eEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 999999999999999999999999977655554444
No 30
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.86 E-value=3.7e-21 Score=221.15 Aligned_cols=251 Identities=17% Similarity=0.177 Sum_probs=196.8
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcccc
Q 002280 459 SNRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSG 537 (943)
Q Consensus 459 ~~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~G 537 (943)
..+..+.|+|+|||..+..++|..+|..||. |..+.+....-.|+|+|.++.+|..|+. |....+..
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~------------i~rvllp~~G~~aiv~fl~p~eAr~Afrklaysr~k~ 448 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGE------------IGRVLLPPGGTGAIVEFLNPLEARKAFRKLAYSRFKS 448 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccc------------cceeecCcccceeeeeecCccchHHHHHHhchhhhcc
Confidence 4566789999999999999999999999884 2233333223359999999999999999 88877766
Q ss_pred ccccccCCc-c-ce--e-------------------------------------------------E-EEEEecCCCCCC
Q 002280 538 SILKIKRPK-E-FV--E-------------------------------------------------V-AIFIGGISRTLS 563 (943)
Q Consensus 538 r~LkV~rp~-d-~~--~-------------------------------------------------~-~LfV~NLp~~~t 563 (943)
.+|.+.+.. + +. + . +|||.||++.++
T Consensus 449 ~plyle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt 528 (725)
T KOG0110|consen 449 APLYLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTT 528 (725)
T ss_pred CccccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccc
Confidence 665444211 0 00 0 0 499999999999
Q ss_pred HHHHHHHHhhcCCeeEEEEEecCC-----CCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCCCcCCCCCCC
Q 002280 564 SKMVMEIVCAFGPLKAYHFEVNED-----HEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGSIMDNSGNP 638 (943)
Q Consensus 564 eedL~e~Fs~fG~I~~v~l~~d~~-----~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~~~~~~~~~~ 638 (943)
.++|...|.++|.|.++.|..-.+ .+.|||||+|.+.++|+.|+..|+|..|.|+.|.|.++..... ....
T Consensus 529 ~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~---~~~g- 604 (725)
T KOG0110|consen 529 LEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPA---STVG- 604 (725)
T ss_pred hhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccc---cccc-
Confidence 999999999999999998865422 3679999999999999999999999999999999998861111 0100
Q ss_pred CCCCCCCCcCCCCCCCceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhcCCCCeEEEEEecC-CCCCcceeEEEEeCC
Q 002280 639 PFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKY-GDSNISTIQACEGNE 717 (943)
Q Consensus 639 ~~~~ip~~~~~~~~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskFG~V~~V~I~r~-~~g~~~G~~FVeF~~ 717 (943)
...+ .......|+|.|+..... ..+|+.+|.+||.|.+|.||+. ..+..+||+||+|.+
T Consensus 605 --K~~~------~kk~~tKIlVRNipFeAt------------~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t 664 (725)
T KOG0110|consen 605 --KKKS------KKKKGTKILVRNIPFEAT------------KREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLT 664 (725)
T ss_pred --cccc------cccccceeeeeccchHHH------------HHHHHHHHhcccceeeeccchhhcchhhccceeeeccC
Confidence 0000 112345678888865444 4789999999999999999998 455678999999999
Q ss_pred HHHHHHHHHHhCCCccCCCceEEEEecc
Q 002280 718 NTASAGVGQNLTNDETNEKGERLEEVTD 745 (943)
Q Consensus 718 ~e~A~~Ai~~LnGr~~~~k~~~v~~~~~ 745 (943)
+.+|.+|+.+|.+..+-++-+++.++-+
T Consensus 665 ~~ea~nA~~al~STHlyGRrLVLEwA~~ 692 (725)
T KOG0110|consen 665 PREAKNAFDALGSTHLYGRRLVLEWAKS 692 (725)
T ss_pred cHHHHHHHHhhcccceechhhheehhcc
Confidence 9999999999999999999999988754
No 31
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=7e-21 Score=197.10 Aligned_cols=157 Identities=20% Similarity=0.326 Sum_probs=140.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcccccc
Q 002280 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~ 539 (943)
...--||||.|...++-+.|++.|.+||.+.. ...|.+..|+++||||||-|.+.++|+.||. |||.-|++|.
T Consensus 60 ~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~------akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~ 133 (321)
T KOG0148|consen 60 NQHFHVFVGDLSPEIDNEKLREAFAPFGEVSD------AKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRT 133 (321)
T ss_pred ccceeEEehhcchhcchHHHHHHhcccccccc------ceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccce
Confidence 34557999999999999999999999987543 3467889999999999999999999999999 9999999999
Q ss_pred ccccCCcc-----------c----e-----eEEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecC
Q 002280 540 LKIKRPKE-----------F----V-----EVAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVD 599 (943)
Q Consensus 540 LkV~rp~d-----------~----~-----~~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~ 599 (943)
|+-.++.- | + ..+||||||+..+++++|++.|+.||+|..|+|.++ +||+||.|.+
T Consensus 134 IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~----qGYaFVrF~t 209 (321)
T KOG0148|consen 134 IRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD----QGYAFVRFET 209 (321)
T ss_pred eeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc----cceEEEEecc
Confidence 99875431 1 0 019999999999999999999999999999999997 8999999999
Q ss_pred hhHHHHHHHHhCCCccCCeEEEEEEccc
Q 002280 600 QLVTPKAIAGLNGLKVGGQVLTAVQAVL 627 (943)
Q Consensus 600 ~e~A~kAl~~LnG~~~~gr~L~V~~A~~ 627 (943)
.|.|..||..+||..|+|+.++|.|-..
T Consensus 210 kEaAahAIv~mNntei~G~~VkCsWGKe 237 (321)
T KOG0148|consen 210 KEAAAHAIVQMNNTEIGGQLVRCSWGKE 237 (321)
T ss_pred hhhHHHHHHHhcCceeCceEEEEecccc
Confidence 9999999999999999999999998644
No 32
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.84 E-value=3.2e-20 Score=211.83 Aligned_cols=165 Identities=18% Similarity=0.240 Sum_probs=131.3
Q ss_pred cccCCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcc
Q 002280 457 TQSNRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSF 535 (943)
Q Consensus 457 ~~~~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l 535 (943)
+........+||++||..++++++++++..||...++ ..|.+..+|.++||||++|.++..+..|++ |||+.+
T Consensus 283 t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f------~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~l 356 (500)
T KOG0120|consen 283 TDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAF------RLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQL 356 (500)
T ss_pred cCcccccchhhhccCcCccCHHHHHHHHHhcccchhh------eeecccccccccceeeeeeeCCcchhhhhcccchhhh
Confidence 3445567899999999999999999999998864433 477888889999999999999999999999 999999
Q ss_pred ccccccccCCcc-------cee----E-----------------EEEEecCCC--CC-CH-------HHHHHHHhhcCCe
Q 002280 536 SGSILKIKRPKE-------FVE----V-----------------AIFIGGISR--TL-SS-------KMVMEIVCAFGPL 577 (943)
Q Consensus 536 ~Gr~LkV~rp~d-------~~~----~-----------------~LfV~NLp~--~~-te-------edL~e~Fs~fG~I 577 (943)
++++|.|+++-. +.. . .|++.|+-. .+ .+ |+|+..|++||.|
T Consensus 357 gd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v 436 (500)
T KOG0120|consen 357 GDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAV 436 (500)
T ss_pred cCceeEeehhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCce
Confidence 999999885321 111 1 222222210 00 01 6678899999999
Q ss_pred eEEEEEec-C----CCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEccc
Q 002280 578 KAYHFEVN-E----DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 627 (943)
Q Consensus 578 ~~v~l~~d-~----~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~ 627 (943)
.+|.+.++ . ..+.|.+||+|.+.+++++|+++|+|.+|.|++|.+.|..+
T Consensus 437 ~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyde 491 (500)
T KOG0120|consen 437 RSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYDE 491 (500)
T ss_pred eEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecCH
Confidence 99999877 2 35689999999999999999999999999999999988644
No 33
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.84 E-value=1.1e-20 Score=186.13 Aligned_cols=164 Identities=23% Similarity=0.305 Sum_probs=138.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccccccc
Q 002280 462 PMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSIL 540 (943)
Q Consensus 462 ~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~L 540 (943)
+..|||||||+..+|++.|.++|-++|.++.+.. -.+..+...+|||||+|.+.|+|+.|+. ||++.|.|++|
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~i------PkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpI 81 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHI------PKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPI 81 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeec------chhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCcee
Confidence 4579999999999999999999988775433211 1233456689999999999999999999 99999999999
Q ss_pred cccCCccc-----eeEEEEEecCCCCCCHHHHHHHHhhcCCeeEE-EEEec--CCCCCCEEEEeecChhHHHHHHHHhCC
Q 002280 541 KIKRPKEF-----VEVAIFIGGISRTLSSKMVMEIVCAFGPLKAY-HFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNG 612 (943)
Q Consensus 541 kV~rp~d~-----~~~~LfV~NLp~~~teedL~e~Fs~fG~I~~v-~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG 612 (943)
+|...... ...+|||+||.+.+++..|.+.|+.||+|... .++++ ++..+|++||-|.+.+.+.+|+..|||
T Consensus 82 rv~kas~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ng 161 (203)
T KOG0131|consen 82 RVNKASAHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNG 161 (203)
T ss_pred EEEecccccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhcc
Confidence 99987632 22399999999999999999999999998663 55555 457799999999999999999999999
Q ss_pred CccCCeEEEEEEcccCCCc
Q 002280 613 LKVGGQVLTAVQAVLDGSI 631 (943)
Q Consensus 613 ~~~~gr~L~V~~A~~~~~~ 631 (943)
+.+.+++|+|.++......
T Consensus 162 q~l~nr~itv~ya~k~~~k 180 (203)
T KOG0131|consen 162 QYLCNRPITVSYAFKKDTK 180 (203)
T ss_pred chhcCCceEEEEEEecCCC
Confidence 9999999999999765543
No 34
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.83 E-value=1.8e-19 Score=185.06 Aligned_cols=168 Identities=10% Similarity=0.143 Sum_probs=142.8
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDG 629 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~ 629 (943)
.|.|.-||..+|+++|+.+|...|.|++|+|++| ++.+-||+||-|.++.+|++|+..|||..+..+.|+|.+|-|..
T Consensus 43 NLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARPSs 122 (360)
T KOG0145|consen 43 NLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARPSS 122 (360)
T ss_pred eeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccCCh
Confidence 7888999999999999999999999999999999 67889999999999999999999999999999999999997754
Q ss_pred CcCCCCCCCCCCCCCCCcCCCCCCCceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhcCCCCeEEEEEecC-CCCCcc
Q 002280 630 SIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKY-GDSNIS 708 (943)
Q Consensus 630 ~~~~~~~~~~~~~ip~~~~~~~~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskFG~V~~V~I~r~-~~g~~~ 708 (943)
.. ....-|++..+...... .+|.++|++||.|..-.|..+ -+|.++
T Consensus 123 ~~---------------------Ik~aNLYvSGlPktMtq------------kelE~iFs~fGrIItSRiL~dqvtg~sr 169 (360)
T KOG0145|consen 123 DS---------------------IKDANLYVSGLPKTMTQ------------KELEQIFSPFGRIITSRILVDQVTGLSR 169 (360)
T ss_pred hh---------------------hcccceEEecCCccchH------------HHHHHHHHHhhhhhhhhhhhhcccceec
Confidence 32 12334777777543332 567788999999987777665 578899
Q ss_pred eeEEEEeCCHHHHHHHHHHhCCCccCCCceEEEEeccccccccc
Q 002280 709 TIQACEGNENTASAGVGQNLTNDETNEKGERLEEVTDHKSIKNN 752 (943)
Q Consensus 709 G~~FVeF~~~e~A~~Ai~~LnGr~~~~k~~~v~~~~~~~~~~~~ 752 (943)
|.|||.|+...+|+.||..|||..-.+-+..+.....+.++...
T Consensus 170 GVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPsq~t 213 (360)
T KOG0145|consen 170 GVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPSQKT 213 (360)
T ss_pred ceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCccccc
Confidence 99999999999999999999999999888888777766544433
No 35
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.79 E-value=1e-18 Score=191.77 Aligned_cols=160 Identities=18% Similarity=0.265 Sum_probs=134.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCccee-eeeeecCCCeeeEEeCCHHHHHHHHH--ccC-Ccc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCI-GCVIQREKGQAFVEFLTAEDASAALC--CDG-CSF 535 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~-~~~~~~skGyAFVeF~s~edA~~Al~--LnG-~~l 535 (943)
+-.+++|||||||.++++++|++.|++.+. |+..|- +.. -....+++|||||+|.+..+|..|-. ++| +.+
T Consensus 161 Svan~RLFiG~IPK~k~keeIlee~~kVte--GVvdVi---vy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~kl 235 (506)
T KOG0117|consen 161 SVANCRLFIGNIPKTKKKEEILEEMKKVTE--GVVDVI---VYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKL 235 (506)
T ss_pred eeecceeEeccCCccccHHHHHHHHHhhCC--CeeEEE---EecCccccccccceEEEEeecchhHHHHHhhccCCceee
Confidence 445789999999999999999999988763 332221 000 01346789999999999999999988 777 799
Q ss_pred ccccccccCCcccee---------EEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHH
Q 002280 536 SGSILKIKRPKEFVE---------VAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKA 606 (943)
Q Consensus 536 ~Gr~LkV~rp~d~~~---------~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kA 606 (943)
.|..+.|.|+..... ..|||.||+..+|+|.|+++|+.||.|..|+.++| ||||+|.+.++|.+|
T Consensus 236 wgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD------YaFVHf~eR~davkA 309 (506)
T KOG0117|consen 236 WGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD------YAFVHFAEREDAVKA 309 (506)
T ss_pred cCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc------eeEEeecchHHHHHH
Confidence 999999987542111 18999999999999999999999999999987766 999999999999999
Q ss_pred HHHhCCCccCCeEEEEEEcccCCC
Q 002280 607 IAGLNGLKVGGQVLTAVQAVLDGS 630 (943)
Q Consensus 607 l~~LnG~~~~gr~L~V~~A~~~~~ 630 (943)
++.|||..|.|..|.|..|.|...
T Consensus 310 m~~~ngkeldG~~iEvtLAKP~~k 333 (506)
T KOG0117|consen 310 MKETNGKELDGSPIEVTLAKPVDK 333 (506)
T ss_pred HHHhcCceecCceEEEEecCChhh
Confidence 999999999999999999988553
No 36
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.78 E-value=6e-19 Score=192.55 Aligned_cols=156 Identities=17% Similarity=0.219 Sum_probs=128.7
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCc-cC--CeEEEEEEcc
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLK-VG--GQVLTAVQAV 626 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~-~~--gr~L~V~~A~ 626 (943)
+|||+.||..++|.||+++|++||.|-.|.|++| ++.++|||||.|.+.++|.+|+.+|+.++ |. ..+|.|.+|.
T Consensus 36 KlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad 115 (510)
T KOG0144|consen 36 KLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYAD 115 (510)
T ss_pred hheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecccc
Confidence 9999999999999999999999999999999999 56789999999999999999999999866 33 3578888775
Q ss_pred cCCCcCCCCCCCCCCCCCCCcCCCCCCCceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCC
Q 002280 627 LDGSIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYGDSN 706 (943)
Q Consensus 627 ~~~~~~~~~~~~~~~~ip~~~~~~~~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskFG~V~~V~I~r~~~g~ 706 (943)
...... ...+.|+|.-+-.... +.+|+++|++||.|+.|.|.+++.+.
T Consensus 116 ~E~er~--------------------~~e~KLFvg~lsK~~t------------e~evr~iFs~fG~Ied~~ilrd~~~~ 163 (510)
T KOG0144|consen 116 GERERI--------------------VEERKLFVGMLSKQCT------------ENEVREIFSRFGHIEDCYILRDPDGL 163 (510)
T ss_pred hhhhcc--------------------ccchhhhhhhcccccc------------HHHHHHHHHhhCccchhhheeccccc
Confidence 433221 0123344443322222 36799999999999999999999999
Q ss_pred cceeEEEEeCCHHHHHHHHHHhCCCccCCCceE
Q 002280 707 ISTIQACEGNENTASAGVGQNLTNDETNEKGER 739 (943)
Q Consensus 707 ~~G~~FVeF~~~e~A~~Ai~~LnGr~~~~k~~~ 739 (943)
++|++||+|.+.+-|..||++|||...-..|..
T Consensus 164 sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~ 196 (510)
T KOG0144|consen 164 SRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQ 196 (510)
T ss_pred ccceeEEEEehHHHHHHHHHhhccceeeccCCC
Confidence 999999999999999999999999887655543
No 37
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.76 E-value=5.2e-18 Score=195.47 Aligned_cols=237 Identities=21% Similarity=0.237 Sum_probs=175.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccccccc
Q 002280 462 PMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSIL 540 (943)
Q Consensus 462 ~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~L 540 (943)
..-+|||.|||+.+|+++|+.+| |||.|..++.|-+|.. ++|+.+.|+.|
T Consensus 226 etgrlf~RNLpyt~~eed~~~lf-----------------------------a~v~~~~~~~avka~~~~D~k~fqgrml 276 (725)
T KOG0110|consen 226 ETGRLFVRNLPYTSTEEDLLKLF-----------------------------AFVTFMFPEHAVKAYSELDGKVFQGRML 276 (725)
T ss_pred hhhhhhhccCCccccHHHHHHhh-----------------------------HHHhhhhhHHHHhhhhhcccccccccee
Confidence 35689999999999999999888 6788888888888887 88888888877
Q ss_pred cccCCc--------------------------------cceeE-------------------------------------
Q 002280 541 KIKRPK--------------------------------EFVEV------------------------------------- 551 (943)
Q Consensus 541 kV~rp~--------------------------------d~~~~------------------------------------- 551 (943)
.|-... .|+..
T Consensus 277 hvlp~~~k~~~~~~~~~~~~~~k~~ke~~rk~~~~~~~~wn~l~~~~~ava~~~a~k~~v~k~~i~d~~~~gsavr~al~ 356 (725)
T KOG0110|consen 277 HVLPSKEKSTAKEDASELGSDYKKEKELKRKAASASFHSWNTLFMGANAVAGILAQKLGVEKSRILDGSLSGSAVRLALG 356 (725)
T ss_pred eecCcchhhhhhhhHhhcCCcHHHHHHhccccchhcceecccccccccHHHHHHHHHhCCeeeeeechhhcchHHHHHHH
Confidence 764211 01000
Q ss_pred ------------------------------EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChh
Q 002280 552 ------------------------------AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQL 601 (943)
Q Consensus 552 ------------------------------~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e 601 (943)
.|+|+|||..+..++|..+|..||.|..+.++ . +--.++|+|.++.
T Consensus 357 etr~~~e~~~~~ee~gV~l~~F~~~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp-~---~G~~aiv~fl~p~ 432 (725)
T KOG0110|consen 357 ETRVVQEVRRFFEENGVKLDAFSQAERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP-P---GGTGAIVEFLNPL 432 (725)
T ss_pred HhhhchhhhhhHHhhCcccccchhhhhhcceeeeccCccccccHHHHHHhhcccccceeecC-c---ccceeeeeecCcc
Confidence 78999999999999999999999999988543 2 2235999999999
Q ss_pred HHHHHHHHhCCCccCCeEEEEEEcccCCCc-------CCCCCCCC------------CCCCCCCcCCC-----------C
Q 002280 602 VTPKAIAGLNGLKVGGQVLTAVQAVLDGSI-------MDNSGNPP------------FHGIPKHALPL-----------L 651 (943)
Q Consensus 602 ~A~kAl~~LnG~~~~gr~L~V~~A~~~~~~-------~~~~~~~~------------~~~ip~~~~~~-----------~ 651 (943)
+|.+|+..|....+...++.+.++...... .......+ -.++.....+. .
T Consensus 433 eAr~Afrklaysr~k~~plyle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~ 512 (725)
T KOG0110|consen 433 EARKAFRKLAYSRFKSAPLYLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDE 512 (725)
T ss_pred chHHHHHHhchhhhccCccccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhcc
Confidence 999999999999888888877765321111 11100000 00111111100 1
Q ss_pred CCCceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhcCCCCeEEEEEecCCCC----CcceeEEEEeCCHHHHHHHHHH
Q 002280 652 KKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYGDS----NISTIQACEGNENTASAGVGQN 727 (943)
Q Consensus 652 ~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskFG~V~~V~I~r~~~g----~~~G~~FVeF~~~e~A~~Ai~~ 727 (943)
..++. |++.|+.....+ +++..+|.++|.|.+|.|...... .+.|||||+|.+.++|+.|+++
T Consensus 513 ~~~t~-lfvkNlnf~Tt~------------e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~ 579 (725)
T KOG0110|consen 513 ETETK-LFVKNLNFDTTL------------EDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKA 579 (725)
T ss_pred ccchh-hhhhcCCcccch------------hHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHH
Confidence 12222 888888765555 789999999999999999876433 3569999999999999999999
Q ss_pred hCCCccCCCceEEEEec
Q 002280 728 LTNDETNEKGERLEEVT 744 (943)
Q Consensus 728 LnGr~~~~k~~~v~~~~ 744 (943)
|+|..+.+..+.+..+-
T Consensus 580 lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 580 LQGTVLDGHKLELKISE 596 (725)
T ss_pred hcCceecCceEEEEecc
Confidence 99999999988886654
No 38
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.73 E-value=6.3e-17 Score=173.13 Aligned_cols=188 Identities=16% Similarity=0.217 Sum_probs=147.7
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeE--------EEEEecC-CCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEE
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKA--------YHFEVNE-DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTA 622 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~--------v~l~~d~-~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V 622 (943)
.|||.|||..+|.+++.++|+++|.|.. |+|.++. |.-+|-|.|.|...+++..|+..|++..|.|+.|.|
T Consensus 136 ~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~rV 215 (382)
T KOG1548|consen 136 SVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKLRV 215 (382)
T ss_pred eEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEEEE
Confidence 7999999999999999999999998865 7777774 556999999999999999999999999999999999
Q ss_pred EEcccCCCc---CCCCCC---CC-----------CCCCCCCcCCCCCCCceEEEeccCCCcCCCCCCChHHHHHHHHHHH
Q 002280 623 VQAVLDGSI---MDNSGN---PP-----------FHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVR 685 (943)
Q Consensus 623 ~~A~~~~~~---~~~~~~---~~-----------~~~ip~~~~~~~~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlr 685 (943)
..|...... +..... .+ +.-.|...-+......++|+|.|||+++++. -++..+.+|.+||+
T Consensus 216 erAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~-~~~~l~~dlkedl~ 294 (382)
T KOG1548|consen 216 ERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFE-KNPDLLNDLKEDLT 294 (382)
T ss_pred ehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhc-cCHHHHHHHHHHHH
Confidence 988532211 000000 00 0001111112223457899999999999984 55577899999999
Q ss_pred HHhcCCCCeEEEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCceEEEEe
Q 002280 686 LECARFGSVKSVNVVKYGDSNISTIQACEGNENTASAGVGQNLTNDETNEKGERLEEV 743 (943)
Q Consensus 686 e~fskFG~V~~V~I~r~~~g~~~G~~FVeF~~~e~A~~Ai~~LnGr~~~~k~~~v~~~ 743 (943)
++|++||.|.+|.|....+ .|.+-|.|.+.++|..||+.|+||+|.++.+....-
T Consensus 295 eec~K~G~v~~vvv~d~hP---dGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~ 349 (382)
T KOG1548|consen 295 EECEKFGQVRKVVVYDRHP---DGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIW 349 (382)
T ss_pred HHHHHhCCcceEEEeccCC---CceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEe
Confidence 9999999999999985433 233469999999999999999999999999887554
No 39
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.73 E-value=5.4e-18 Score=177.34 Aligned_cols=144 Identities=21% Similarity=0.345 Sum_probs=129.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccccccccc
Q 002280 464 RRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSILKI 542 (943)
Q Consensus 464 rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~LkV 542 (943)
-+|||||||..+++.+|+.+|++||+ |+.|.+- |.||||...+...|..|+. |+|..|.|..|.|
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygk------------VlECDIv--KNYgFVHiEdktaaedairNLhgYtLhg~nInV 68 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGK------------VLECDIV--KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINV 68 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCc------------eEeeeee--cccceEEeecccccHHHHhhcccceecceEEEE
Confidence 37999999999999999999999985 3444433 7899999999999999999 9999999999999
Q ss_pred cCCccc--eeEEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEE
Q 002280 543 KRPKEF--VEVAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVL 620 (943)
Q Consensus 543 ~rp~d~--~~~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L 620 (943)
...+.. ...+|+|+||.+.++.++|+..|++||+|..+.|+++ |+||.|.-.++|..|+..|+|..|.|+.+
T Consensus 69 eaSksKsk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd------y~fvh~d~~eda~~air~l~~~~~~gk~m 142 (346)
T KOG0109|consen 69 EASKSKSKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD------YAFVHFDRAEDAVEAIRGLDNTEFQGKRM 142 (346)
T ss_pred EeccccCCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc------eeEEEEeeccchHHHHhccccccccccee
Confidence 976654 3449999999999999999999999999999999765 99999999999999999999999999999
Q ss_pred EEEEccc
Q 002280 621 TAVQAVL 627 (943)
Q Consensus 621 ~V~~A~~ 627 (943)
.|+.+..
T Consensus 143 ~vq~sts 149 (346)
T KOG0109|consen 143 HVQLSTS 149 (346)
T ss_pred eeeeecc
Confidence 9987644
No 40
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.71 E-value=4.7e-17 Score=170.39 Aligned_cols=148 Identities=18% Similarity=0.272 Sum_probs=131.7
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCCCc
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGSI 631 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~~~ 631 (943)
+|||||||..+++.+|+.+|++||+|..|.|+++ ||||..++...|..||..|||..|.|..|.|..+..+
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK--- 74 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVKN------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK--- 74 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeecc------cceEEeecccccHHHHhhcccceecceEEEEEecccc---
Confidence 7999999999999999999999999999999876 9999999999999999999999999999999865332
Q ss_pred CCCCCCCCCCCCCCCcCCCCCCCceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCcceeE
Q 002280 632 MDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYGDSNISTIQ 711 (943)
Q Consensus 632 ~~~~~~~~~~~ip~~~~~~~~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskFG~V~~V~I~r~~~g~~~G~~ 711 (943)
.+++..|.+.|+.+...- .+|+..|++||.|..|.|.+ +|+
T Consensus 75 --------------------sk~stkl~vgNis~tctn------------~ElRa~fe~ygpviecdivk-------dy~ 115 (346)
T KOG0109|consen 75 --------------------SKASTKLHVGNISPTCTN------------QELRAKFEKYGPVIECDIVK-------DYA 115 (346)
T ss_pred --------------------CCCccccccCCCCccccC------------HHHhhhhcccCCceeeeeec-------cee
Confidence 235667888998664443 46899999999999999976 578
Q ss_pred EEEeCCHHHHHHHHHHhCCCccCCCceEEEEecccc
Q 002280 712 ACEGNENTASAGVGQNLTNDETNEKGERLEEVTDHK 747 (943)
Q Consensus 712 FVeF~~~e~A~~Ai~~LnGr~~~~k~~~v~~~~~~~ 747 (943)
||.|+..++|..|+..|+|++|.++.+.|+.+++.-
T Consensus 116 fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsrl 151 (346)
T KOG0109|consen 116 FVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 151 (346)
T ss_pred EEEEeeccchHHHHhcccccccccceeeeeeecccc
Confidence 999999999999999999999999999999988744
No 41
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.69 E-value=1.7e-16 Score=156.61 Aligned_cols=163 Identities=15% Similarity=0.165 Sum_probs=134.4
Q ss_pred EEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccC
Q 002280 551 VAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLD 628 (943)
Q Consensus 551 ~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~ 628 (943)
.+|||+||+..++++.|.++|-+.|+|..++++++ ++..+|||||+|.+.++|+-|++.||..++-|++|+|..+...
T Consensus 10 ~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas~~ 89 (203)
T KOG0131|consen 10 ATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKASAH 89 (203)
T ss_pred ceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecccc
Confidence 39999999999999999999999999999999988 4567999999999999999999999999999999999987521
Q ss_pred CCcCCCCCCCCCCCCCCCcCCCCCCCceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhcCCCCeEEE-EEecCC-CCC
Q 002280 629 GSIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSV-NVVKYG-DSN 706 (943)
Q Consensus 629 ~~~~~~~~~~~~~~ip~~~~~~~~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskFG~V~~V-~I~r~~-~g~ 706 (943)
.... ..+.-|++.||-.. +|+ .-|...|+.||.+... +|.+++ +|.
T Consensus 90 ~~nl--------------------~vganlfvgNLd~~-----vDe-------~~L~dtFsafG~l~~~P~i~rd~~tg~ 137 (203)
T KOG0131|consen 90 QKNL--------------------DVGANLFVGNLDPE-----VDE-------KLLYDTFSAFGVLISPPKIMRDPDTGN 137 (203)
T ss_pred cccc--------------------cccccccccccCcc-----hhH-------HHHHHHHHhccccccCCcccccccCCC
Confidence 1110 11245778887441 222 2356669999987652 455654 578
Q ss_pred cceeEEEEeCCHHHHHHHHHHhCCCccCCCceEEEEecc
Q 002280 707 ISTIQACEGNENTASAGVGQNLTNDETNEKGERLEEVTD 745 (943)
Q Consensus 707 ~~G~~FVeF~~~e~A~~Ai~~LnGr~~~~k~~~v~~~~~ 745 (943)
.+|||||.|.+.+.+.+|+.+|||.-++.+.+++.....
T Consensus 138 ~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k 176 (203)
T KOG0131|consen 138 PKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFK 176 (203)
T ss_pred CCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEe
Confidence 888999999999999999999999999999999988764
No 42
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.66 E-value=5.7e-15 Score=160.72 Aligned_cols=256 Identities=18% Similarity=0.229 Sum_probs=176.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCC--cccc
Q 002280 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGC--SFSG 537 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~--~l~G 537 (943)
.+++.|.++|||+++||++|..++.+||.+ ..+.....+..|||+|.+.+.|...+. +..+ .+.|
T Consensus 26 ~pSkV~HlRnlp~e~tE~elI~Lg~pFG~v------------tn~~~lkGknQAflem~d~~sAvtmv~~y~~~~p~lr~ 93 (492)
T KOG1190|consen 26 EPSKVVHLRNLPWEVTEEELISLGLPFGKV------------TNLLMLKGKNQAFLEMADEESAVTMVNYYTSVTPVLRG 93 (492)
T ss_pred CCcceeEeccCCccccHHHHHHhcccccce------------eeeeeeccchhhhhhhcchhhhhheeecccccCccccC
Confidence 356889999999999999999999999853 334444456689999999999988443 2221 3444
Q ss_pred ccccccCCc------------------------------------cc--------eeEEEEEecCCCCCCHHHHHHHHhh
Q 002280 538 SILKIKRPK------------------------------------EF--------VEVAIFIGGISRTLSSKMVMEIVCA 573 (943)
Q Consensus 538 r~LkV~rp~------------------------------------d~--------~~~~LfV~NLp~~~teedL~e~Fs~ 573 (943)
++|-|+... .. .-..++|.|+-+.++-+-|..+|++
T Consensus 94 ~~~yiq~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~ 173 (492)
T KOG1190|consen 94 QPIYIQYSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSK 173 (492)
T ss_pred cceeehhhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhh
Confidence 444443110 00 0017889999999999999999999
Q ss_pred cCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCcc--CCeEEEEEEcccCCCc---------------CC-CC
Q 002280 574 FGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKV--GGQVLTAVQAVLDGSI---------------MD-NS 635 (943)
Q Consensus 574 fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~--~gr~L~V~~A~~~~~~---------------~~-~~ 635 (943)
||.|..|.-. +..+.-.|.|+|.+.+.|..|..+|+|+.| +.+.|++.++.-.... .. ..
T Consensus 174 fG~VlKIiTF--~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd 251 (492)
T KOG1190|consen 174 FGFVLKIITF--TKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGD 251 (492)
T ss_pred cceeEEEEEE--ecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCCCCc
Confidence 9998765332 223444689999999999999999999987 4467777654211100 00 00
Q ss_pred CCC--------CCC----------CCCCCc-----C-CCCCCC--ceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhc
Q 002280 636 GNP--------PFH----------GIPKHA-----L-PLLKKP--TEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECA 689 (943)
Q Consensus 636 ~~~--------~~~----------~ip~~~-----~-~~~~~p--s~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fs 689 (943)
+.+ .+. .+|... . ...+.+ +.+|.+.|+... . ++ .+-|..+|.
T Consensus 252 ~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~-~---VT-------~d~LftlFg 320 (492)
T KOG1190|consen 252 GQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEE-A---VT-------PDVLFTLFG 320 (492)
T ss_pred cccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchh-c---cc-------hhHHHHHHh
Confidence 000 000 011000 0 112223 577888887421 1 12 255788999
Q ss_pred CCCCeEEEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCceEEEEecc
Q 002280 690 RFGSVKSVNVVKYGDSNISTIQACEGNENTASAGVGQNLTNDETNEKGERLEEVTD 745 (943)
Q Consensus 690 kFG~V~~V~I~r~~~g~~~G~~FVeF~~~e~A~~Ai~~LnGr~~~~k~~~v~~~~~ 745 (943)
-||.|..|+|..+.. --|.|+|.+...|.-|+..|+|..+-++.+.+..+-+
T Consensus 321 vYGdVqRVkil~nkk----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH 372 (492)
T KOG1190|consen 321 VYGDVQRVKILYNKK----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKH 372 (492)
T ss_pred hhcceEEEEeeecCC----cceeeeecchhHHHHHHHHhhcceecCceEEEeeccC
Confidence 999999999998654 2368999999999999999999999999999888765
No 43
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.59 E-value=1.4e-13 Score=150.69 Aligned_cols=156 Identities=19% Similarity=0.295 Sum_probs=122.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcccccc
Q 002280 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~ 539 (943)
...|.+||.|||+++.+.+|++||..-. | .|.-. .+.--..++++|+|.|||.++|.+++|++ ||...+.|++
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekv---G--ev~yv-eLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~ 115 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKV---G--EVEYV-ELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRE 115 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhc---C--ceEee-eeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCce
Confidence 3456799999999999999999996632 1 11100 11222348899999999999999999999 9999999999
Q ss_pred ccccCCcc-----c-----------------e------------------------------------------eE----
Q 002280 540 LKIKRPKE-----F-----------------V------------------------------------------EV---- 551 (943)
Q Consensus 540 LkV~rp~d-----~-----------------~------------------------------------------~~---- 551 (943)
|.|.--.+ | . ..
T Consensus 116 l~vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~ 195 (608)
T KOG4212|consen 116 LVVKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYN 195 (608)
T ss_pred EEEeccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhh
Confidence 99872111 0 0 00
Q ss_pred ---------------------EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec-CCCCCCEEEEeecChhHHHHHHHH
Q 002280 552 ---------------------AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN-EDHEEPCAFIEYVDQLVTPKAIAG 609 (943)
Q Consensus 552 ---------------------~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d-~~~skG~aFVeF~~~e~A~kAl~~ 609 (943)
++||.||.+.+....|.+.|.-.|.|..|.+-.+ .+.++|+|.++|..+-.|..||..
T Consensus 196 lfgl~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsm 275 (608)
T KOG4212|consen 196 LFGLSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISM 275 (608)
T ss_pred cccchhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHh
Confidence 8999999999999999999999999999888766 456799999999999999999999
Q ss_pred hCCCccCCeEEEE
Q 002280 610 LNGLKVGGQVLTA 622 (943)
Q Consensus 610 LnG~~~~gr~L~V 622 (943)
|++.-+..++..+
T Consensus 276 l~~~g~~~~~~~~ 288 (608)
T KOG4212|consen 276 LDRQGLFDRRMTV 288 (608)
T ss_pred hccCCCcccccee
Confidence 9865544444433
No 44
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.52 E-value=1.6e-14 Score=158.56 Aligned_cols=164 Identities=17% Similarity=0.246 Sum_probs=138.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHHccCCcccccccc
Q 002280 462 PMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSILK 541 (943)
Q Consensus 462 ~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~LnG~~l~Gr~Lk 541 (943)
...+||||+|++.+|++.|+++|.+||.+... ..+.+..+++++||+||+|.+++.+..+|...-..|.|+.|.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~------~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve 78 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDC------VVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVE 78 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeE------EEeccCCCCCcccccceecCCCcchheeecccccccCCcccc
Confidence 57899999999999999999999988864332 234455668999999999999999999998777888888888
Q ss_pred ccCCccc----------eeEEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecC--CCCCCEEEEeecChhHHHHHHHH
Q 002280 542 IKRPKEF----------VEVAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAG 609 (943)
Q Consensus 542 V~rp~d~----------~~~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~--~~skG~aFVeF~~~e~A~kAl~~ 609 (943)
+.+.... ...+|||++||..++++++++.|.+||.|..+.++.|. ...+||+||.|.+.+.+.+++.
T Consensus 79 ~k~av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~- 157 (311)
T KOG4205|consen 79 PKRAVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL- 157 (311)
T ss_pred ceeccCcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-
Confidence 7753311 12299999999999999999999999999998888884 4569999999999999998886
Q ss_pred hCCCccCCeEEEEEEcccCCCcC
Q 002280 610 LNGLKVGGQVLTAVQAVLDGSIM 632 (943)
Q Consensus 610 LnG~~~~gr~L~V~~A~~~~~~~ 632 (943)
..-+.|.|+.+.|..|.|.....
T Consensus 158 ~~f~~~~gk~vevkrA~pk~~~~ 180 (311)
T KOG4205|consen 158 QKFHDFNGKKVEVKRAIPKEVMQ 180 (311)
T ss_pred cceeeecCceeeEeeccchhhcc
Confidence 66788999999999999877654
No 45
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=8e-14 Score=137.70 Aligned_cols=139 Identities=22% Similarity=0.292 Sum_probs=119.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeec---CCCeeeEEeCCHHHHHHHHH-ccCCccc
Q 002280 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQR---EKGQAFVEFLTAEDASAALC-CDGCSFS 536 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~---skGyAFVeF~s~edA~~Al~-LnG~~l~ 536 (943)
+..++|||||||..+-+.+|.++|.+||. |..+.... ...||||+|.++-+|+-||. -+|..+.
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~------------i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdyd 71 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGR------------IREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYD 71 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcc------------eEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccC
Confidence 56789999999999999999999999884 33333322 35699999999999999999 9999999
Q ss_pred cccccccCCcccee------------------------------EEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecC
Q 002280 537 GSILKIKRPKEFVE------------------------------VAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE 586 (943)
Q Consensus 537 Gr~LkV~rp~d~~~------------------------------~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~ 586 (943)
|..|+|..|...-. ..|.|.+||...+++||++.+.+.|.|....+.+|
T Consensus 72 g~rLRVEfprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD- 150 (241)
T KOG0105|consen 72 GCRLRVEFPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD- 150 (241)
T ss_pred cceEEEEeccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-
Confidence 99999986542210 08999999999999999999999999998888776
Q ss_pred CCCCCEEEEeecChhHHHHHHHHhCCCccC
Q 002280 587 DHEEPCAFIEYVDQLVTPKAIAGLNGLKVG 616 (943)
Q Consensus 587 ~~skG~aFVeF~~~e~A~kAl~~LnG~~~~ 616 (943)
|++.|+|...++..-|+..|....+.
T Consensus 151 ----g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 151 ----GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred ----cceeeeeeehhhHHHHHHhhcccccc
Confidence 69999999999999999999887763
No 46
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.50 E-value=2.1e-12 Score=141.02 Aligned_cols=250 Identities=18% Similarity=0.244 Sum_probs=184.2
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeee-ecCCCe-eeEEeCCHHHHHHHHH-ccCCccc-c-
Q 002280 463 MRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVI-QREKGQ-AFVEFLTAEDASAALC-CDGCSFS-G- 537 (943)
Q Consensus 463 ~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~-~~skGy-AFVeF~s~edA~~Al~-LnG~~l~-G- 537 (943)
--+++|+|+-+-+|-+-|-.+|+.||. |..+.| .++.+| |+|+|.+++.|..|-. |+|..|. |
T Consensus 150 vLr~iie~m~ypVslDVLHqvFS~fG~------------VlKIiTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngc 217 (492)
T KOG1190|consen 150 VLRTIIENMFYPVSLDVLHQVFSKFGF------------VLKIITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGC 217 (492)
T ss_pred eEEEEeccceeeeEHHHHHHHHhhcce------------eEEEEEEecccchhhhhhccchhhHHHHHHhccCCcccCce
Confidence 347889999999999999999999994 344433 456666 9999999999999998 9998663 3
Q ss_pred ccccccC--------------Ccccee-----------------------------------------------------
Q 002280 538 SILKIKR--------------PKEFVE----------------------------------------------------- 550 (943)
Q Consensus 538 r~LkV~r--------------p~d~~~----------------------------------------------------- 550 (943)
+.|+|.. ..||..
T Consensus 218 CtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n 297 (492)
T KOG1190|consen 218 CTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSAN 297 (492)
T ss_pred eEEEeehhhcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCc
Confidence 3455541 111110
Q ss_pred EEEEEecCC-CCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCC
Q 002280 551 VAIFIGGIS-RTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDG 629 (943)
Q Consensus 551 ~~LfV~NLp-~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~ 629 (943)
..|.|.||. ..+|.+-|..+|+.||.|..|+|+.+ .+-.|.|+|.+...|+.|+..|+|..+.|++|+|.++....
T Consensus 298 ~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~n---kkd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 298 VVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYN---KKDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTN 374 (492)
T ss_pred eEEEEecCchhccchhHHHHHHhhhcceEEEEeeec---CCcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcc
Confidence 057788885 57899999999999999999999886 34689999999999999999999999999999999886554
Q ss_pred CcCCCCC-----------CCCCCCCCCCc--CCC-CCCCceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhcCCCCeE
Q 002280 630 SIMDNSG-----------NPPFHGIPKHA--LPL-LKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVK 695 (943)
Q Consensus 630 ~~~~~~~-----------~~~~~~ip~~~--~~~-~~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskFG~V~ 695 (943)
......+ +.++...+... +.. .-.|+..|.|.|+...-.. ||+++.|..-|.++
T Consensus 375 vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svse------------e~lk~~f~~~g~~v 442 (492)
T KOG1190|consen 375 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSE------------EDLKNLFQEPGGQV 442 (492)
T ss_pred ccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccch------------hHHHHhhhcCCceE
Confidence 4333221 22222221111 111 2367889999998764443 78999999888765
Q ss_pred EEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCCccCCC-ceEEEE
Q 002280 696 SVNVVKYGDSNISTIQACEGNENTASAGVGQNLTNDETNEK-GERLEE 742 (943)
Q Consensus 696 ~V~I~r~~~g~~~G~~FVeF~~~e~A~~Ai~~LnGr~~~~k-~~~v~~ 742 (943)
+....-. ...-++.+.+.++++|..|+..|+...+++- -+.|+-
T Consensus 443 kafkff~---kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSF 487 (492)
T KOG1190|consen 443 KAFKFFQ---KDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSF 487 (492)
T ss_pred EeeeecC---CCcceeecccCChhHhhhhccccccccCCCCceEEEEe
Confidence 5554332 1234689999999999999999999988865 444443
No 47
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=5.3e-14 Score=145.68 Aligned_cols=76 Identities=16% Similarity=0.329 Sum_probs=70.6
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEccc
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 627 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~ 627 (943)
.|||-.||....+.+|..+|-.||.|.+.++..| ++.++.|+||.|.++.+|+.||.+|||+.|+-+.|+|....|
T Consensus 287 NlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRP 364 (371)
T KOG0146|consen 287 NLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRP 364 (371)
T ss_pred eEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCc
Confidence 8999999999999999999999999999888877 567899999999999999999999999999999999975544
No 48
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=4.6e-13 Score=138.81 Aligned_cols=89 Identities=19% Similarity=0.350 Sum_probs=71.7
Q ss_pred cccccccCCcc----ceeEEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec-CCCCCCEEEEeecChhHHHHHHHHhC
Q 002280 537 GSILKIKRPKE----FVEVAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN-EDHEEPCAFIEYVDQLVTPKAIAGLN 611 (943)
Q Consensus 537 Gr~LkV~rp~d----~~~~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d-~~~skG~aFVeF~~~e~A~kAl~~Ln 611 (943)
.++|.|..... -...+||||-|...-.|+|++.+|+.||.|..|.+.+. .+.++|||||.|.+..+|..||..|+
T Consensus 2 nrpiqvkpadsesrg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLH 81 (371)
T KOG0146|consen 2 NRPIQVKPADSESRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALH 81 (371)
T ss_pred CCCccccccccccCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhc
Confidence 35666653221 12239999999999999999999999999999999887 46789999999999999999999999
Q ss_pred CCc-cCC--eEEEEEEc
Q 002280 612 GLK-VGG--QVLTAVQA 625 (943)
Q Consensus 612 G~~-~~g--r~L~V~~A 625 (943)
|.. +.| -.|.|.+|
T Consensus 82 gSqTmpGASSSLVVK~A 98 (371)
T KOG0146|consen 82 GSQTMPGASSSLVVKFA 98 (371)
T ss_pred ccccCCCCccceEEEec
Confidence 954 333 46777764
No 49
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.47 E-value=4.8e-13 Score=137.44 Aligned_cols=153 Identities=24% Similarity=0.351 Sum_probs=129.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHH----HHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcc
Q 002280 461 RPMRRLCVENLPLSASEKALME----FLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSF 535 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~e----lF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l 535 (943)
.++.||||.||+..+..++|+. +|++||.+. .|+-+.+...+|.|||.|.+.+.|..|+. |+|+.|
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~il---------dI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpF 77 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKIL---------DISAFKTPKMRGQAFVVFKETEAASAALRALQGFPF 77 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeE---------EEEecCCCCccCceEEEecChhHHHHHHHHhcCCcc
Confidence 3455999999999999999988 999998532 34555678899999999999999999999 999999
Q ss_pred ccccccccCCcc-------------------------------------c---------------e--eEEEEEecCCCC
Q 002280 536 SGSILKIKRPKE-------------------------------------F---------------V--EVAIFIGGISRT 561 (943)
Q Consensus 536 ~Gr~LkV~rp~d-------------------------------------~---------------~--~~~LfV~NLp~~ 561 (943)
.|++++|+.++. + . ...||+.|||..
T Consensus 78 ygK~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~e 157 (221)
T KOG4206|consen 78 YGKPMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSE 157 (221)
T ss_pred cCchhheecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcc
Confidence 999999984321 0 0 017999999999
Q ss_pred CCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccC-CeEEEEEEc
Q 002280 562 LSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVG-GQVLTAVQA 625 (943)
Q Consensus 562 ~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~-gr~L~V~~A 625 (943)
++.+.+..+|.+|...+.|+++.. ..+.|||+|.+...|..|...|+|..|. ...+.|.+|
T Consensus 158 s~~e~l~~lf~qf~g~keir~i~~---~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a 219 (221)
T KOG4206|consen 158 SESEMLSDLFEQFPGFKEIRLIPP---RSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFA 219 (221)
T ss_pred hhHHHHHHHHhhCcccceeEeccC---CCceeEEecchhhhhHHHhhhhccceeccCceEEeccc
Confidence 999999999999999999988764 5789999999999999999999998886 667777654
No 50
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.44 E-value=2.1e-12 Score=144.56 Aligned_cols=152 Identities=19% Similarity=0.305 Sum_probs=122.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHHccCCccccccccc
Q 002280 463 MRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSILKI 542 (943)
Q Consensus 463 ~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~LnG~~l~Gr~LkV 542 (943)
..-|-+.+|||++|+++|.+||+.|.. .. .+..+.+|+..|-|||||.+.+++.+||+.+-..+..+-|.|
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~I----~~-----~~~~r~~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEV 80 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCGI----EN-----LEIPRRNGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEV 80 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCce----eE-----EEEeccCCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEE
Confidence 456889999999999999999988662 21 556677799999999999999999999999998888888888
Q ss_pred cCCc----cce-----------eEEEEEecCCCCCCHHHHHHHHhhcCCeeE-EEEEec-CCCCCCEEEEeecChhHHHH
Q 002280 543 KRPK----EFV-----------EVAIFIGGISRTLSSKMVMEIVCAFGPLKA-YHFEVN-EDHEEPCAFIEYVDQLVTPK 605 (943)
Q Consensus 543 ~rp~----d~~-----------~~~LfV~NLp~~~teedL~e~Fs~fG~I~~-v~l~~d-~~~skG~aFVeF~~~e~A~k 605 (943)
.... +|. ...|-+.+||+.++++||.++|+-.-.+.. |.++.+ .+...|-|||+|++.+.|++
T Consensus 81 f~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~ 160 (510)
T KOG4211|consen 81 FTAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEI 160 (510)
T ss_pred EccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHH
Confidence 7432 121 118899999999999999999998766655 445555 45678999999999999999
Q ss_pred HHHHhCCCccCCeEEEEEE
Q 002280 606 AIAGLNGLKVGGQVLTAVQ 624 (943)
Q Consensus 606 Al~~LnG~~~~gr~L~V~~ 624 (943)
||. -|...|+-+-|.|-.
T Consensus 161 Al~-rhre~iGhRYIEvF~ 178 (510)
T KOG4211|consen 161 ALG-RHRENIGHRYIEVFR 178 (510)
T ss_pred HHH-HHHHhhccceEEeeh
Confidence 997 344566777777654
No 51
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.41 E-value=3.9e-11 Score=129.68 Aligned_cols=254 Identities=20% Similarity=0.142 Sum_probs=187.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH---ccCCccccc
Q 002280 462 PMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC---CDGCSFSGS 538 (943)
Q Consensus 462 ~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~---LnG~~l~Gr 538 (943)
.+-.|.|.+|...++|.+|.+.++.|| +|.-+.....+..|.|+|.+.+.|..++. -+.+.+.|+
T Consensus 30 ~spvvhvr~l~~~v~eadl~eal~~fG------------~i~yvt~~P~~r~alvefedi~~akn~Vnfaa~n~i~i~gq 97 (494)
T KOG1456|consen 30 PSPVVHVRGLHQGVVEADLVEALSNFG------------PIAYVTCMPHKRQALVEFEDIEGAKNCVNFAADNQIYIAGQ 97 (494)
T ss_pred CCceEEEeccccccchhHHHHHHhcCC------------ceEEEEeccccceeeeeeccccchhhheehhccCcccccCc
Confidence 345799999999999999999999988 55556666778899999999999999987 344677777
Q ss_pred ccccc--------CCccce--eE---EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHH
Q 002280 539 ILKIK--------RPKEFV--EV---AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPK 605 (943)
Q Consensus 539 ~LkV~--------rp~d~~--~~---~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~k 605 (943)
.--+. |+.+.. +. -+-|-|--+.+|-+-|..+|...|+|..|.|++. +--.|.|+|++.+.|++
T Consensus 98 ~Al~NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk---ngVQAmVEFdsv~~Aqr 174 (494)
T KOG1456|consen 98 QALFNYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK---NGVQAMVEFDSVEVAQR 174 (494)
T ss_pred hhhcccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec---cceeeEEeechhHHHHH
Confidence 65444 443211 11 2334555678999999999999999999988775 33479999999999999
Q ss_pred HHHHhCCCcc--CCeEEEEEEcccCCCcCCC------------------CCCC---------------------------
Q 002280 606 AIAGLNGLKV--GGQVLTAVQAVLDGSIMDN------------------SGNP--------------------------- 638 (943)
Q Consensus 606 Al~~LnG~~~--~gr~L~V~~A~~~~~~~~~------------------~~~~--------------------------- 638 (943)
|..+|||..| +-.+|+|.+|.|....... .+..
T Consensus 175 Ak~alNGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~s 254 (494)
T KOG1456|consen 175 AKAALNGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYS 254 (494)
T ss_pred HHhhcccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcc
Confidence 9999999887 5679999999874421000 0000
Q ss_pred -----CCCCCC-----------CCcCCCCCCCceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhcCCCCeEEEEEecC
Q 002280 639 -----PFHGIP-----------KHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKY 702 (943)
Q Consensus 639 -----~~~~ip-----------~~~~~~~~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskFG~V~~V~I~r~ 702 (943)
|....| ..+.+..+.+..|+.|..|--...- .+-|..+|..||.|+.|+.++.
T Consensus 255 g~~~~p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N-----------~drlFNl~ClYGNV~rvkFmkT 323 (494)
T KOG1456|consen 255 GDRHGPPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMN-----------CDRLFNLFCLYGNVERVKFMKT 323 (494)
T ss_pred cccCCCCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccc-----------hhhhhhhhhhcCceeeEEEeec
Confidence 000000 0011223456788888887332111 2567888999999999999986
Q ss_pred CCCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCceEEEEecc
Q 002280 703 GDSNISTIQACEGNENTASAGVGQNLTNDETNEKGERLEEVTD 745 (943)
Q Consensus 703 ~~g~~~G~~FVeF~~~e~A~~Ai~~LnGr~~~~k~~~v~~~~~ 745 (943)
. .|.|.|++.+..+.+.|+..||+-.+-+.++.+..+-.
T Consensus 324 k----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ 362 (494)
T KOG1456|consen 324 K----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQ 362 (494)
T ss_pred c----cceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccc
Confidence 4 45678999999999999999999999988888876644
No 52
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.38 E-value=4.7e-12 Score=136.20 Aligned_cols=160 Identities=17% Similarity=0.245 Sum_probs=126.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeee---ecCCCeeeEEeCCHHHHHHHHH-ccCCccc
Q 002280 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVI---QREKGQAFVEFLTAEDASAALC-CDGCSFS 536 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~---~~skGyAFVeF~s~edA~~Al~-LnG~~l~ 536 (943)
..+..|||.|||..+|-+++.++|+.||.+.. .+....|-+.... |.-+|-|.|.|...++++.|+. |++..|.
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~--d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMR--DPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEec--cCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 34556999999999999999999999985422 2233334333332 6778999999999999999999 9999999
Q ss_pred cccccccCCc-----cceeE-------------------------------------EEEEecCCC----CCC-------
Q 002280 537 GSILKIKRPK-----EFVEV-------------------------------------AIFIGGISR----TLS------- 563 (943)
Q Consensus 537 Gr~LkV~rp~-----d~~~~-------------------------------------~LfV~NLp~----~~t------- 563 (943)
|+.|+|.+++ +|.+. +|.+.||-. ..+
T Consensus 210 g~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dl 289 (382)
T KOG1548|consen 210 GKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDL 289 (382)
T ss_pred CcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHH
Confidence 9999998643 11110 788888843 222
Q ss_pred HHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEE
Q 002280 564 SKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQ 624 (943)
Q Consensus 564 eedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~ 624 (943)
.++|.+.|++||+|..|.|.- ....|.+-|.|.+.+.|..||+.|+|++|+|++|.+..
T Consensus 290 kedl~eec~K~G~v~~vvv~d--~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i 348 (382)
T KOG1548|consen 290 KEDLTEECEKFGQVRKVVVYD--RHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASI 348 (382)
T ss_pred HHHHHHHHHHhCCcceEEEec--cCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEE
Confidence 367888999999999987752 23579999999999999999999999999999998863
No 53
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.37 E-value=3.4e-12 Score=126.73 Aligned_cols=78 Identities=19% Similarity=0.337 Sum_probs=73.2
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDG 629 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~ 629 (943)
+|||+|||+.+++++|+++|++||.|..|.|+.+ ++.++|||||+|.+.++|+.|+..|||..|.|+.|.|.++.+..
T Consensus 36 ~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~~~~ 115 (144)
T PLN03134 36 KLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDRP 115 (144)
T ss_pred EEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCCcCC
Confidence 8999999999999999999999999999999887 45679999999999999999999999999999999999986543
No 54
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.36 E-value=6.5e-12 Score=127.67 Aligned_cols=149 Identities=21% Similarity=0.344 Sum_probs=111.7
Q ss_pred ccccCCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeec----CCCeeeEEeCCHHHHHHHHH-c
Q 002280 456 LTQSNRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQR----EKGQAFVEFLTAEDASAALC-C 530 (943)
Q Consensus 456 ~~~~~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~----skGyAFVeF~s~edA~~Al~-L 530 (943)
..+....-|||||.+||.++...+|..+|..|- |+ .+ ..-..+++ .+.+|||.|.+.++|..|+. |
T Consensus 27 ~~~~~~~VRTLFVSGLP~DvKpREiynLFR~f~---GY---Eg---slLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaL 97 (284)
T KOG1457|consen 27 LADEPGAVRTLFVSGLPNDVKPREIYNLFRRFH---GY---EG---SLLKYTSKGDQVCKPVAFATFTSHQFALAAMNAL 97 (284)
T ss_pred ccccccccceeeeccCCcccCHHHHHHHhccCC---Cc---cc---eeeeeccCCCccccceEEEEecchHHHHHHHHHh
Confidence 344455679999999999999999999997763 11 11 11112222 34789999999999999999 9
Q ss_pred cCCcc---ccccccccCCcc---------ce--------eE---------------------------------------
Q 002280 531 DGCSF---SGSILKIKRPKE---------FV--------EV--------------------------------------- 551 (943)
Q Consensus 531 nG~~l---~Gr~LkV~rp~d---------~~--------~~--------------------------------------- 551 (943)
||+.| .+..|+|.-++. .. ..
T Consensus 98 NGvrFDpE~~stLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~ 177 (284)
T KOG1457|consen 98 NGVRFDPETGSTLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDT 177 (284)
T ss_pred cCeeeccccCceeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccc
Confidence 99887 456666641110 00 00
Q ss_pred ----------------------------------EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEee
Q 002280 552 ----------------------------------AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEY 597 (943)
Q Consensus 552 ----------------------------------~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF 597 (943)
+|||.||..+++|++|+.+|+.|-....++|-. ..+..+||++|
T Consensus 178 t~~~~l~a~~~~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~--~~g~~vaf~~~ 255 (284)
T KOG1457|consen 178 TKSEALSAPDSKAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA--RGGMPVAFADF 255 (284)
T ss_pred cchhhhhhhhhcCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec--CCCcceEeecH
Confidence 999999999999999999999997666665532 23456899999
Q ss_pred cChhHHHHHHHHhCCCcc
Q 002280 598 VDQLVTPKAIAGLNGLKV 615 (943)
Q Consensus 598 ~~~e~A~kAl~~LnG~~~ 615 (943)
.+.+.|..|+..|+|..|
T Consensus 256 ~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 256 EEIEQATDAMNHLQGNLL 273 (284)
T ss_pred HHHHHHHHHHHHhhccee
Confidence 999999999999998766
No 55
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.35 E-value=1.9e-11 Score=125.72 Aligned_cols=167 Identities=16% Similarity=0.210 Sum_probs=124.9
Q ss_pred EEEEecCCCCCCHHHHHH----HHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEccc
Q 002280 552 AIFIGGISRTLSSKMVME----IVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 627 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e----~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~ 627 (943)
+|||.||...+..++|+. +|++||.|..|...+ +...+|.|||.|.+.+.|..|+.+|+|..|-|+++.++||..
T Consensus 11 TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k-t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s 89 (221)
T KOG4206|consen 11 TLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK-TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKS 89 (221)
T ss_pred eEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC-CCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccC
Confidence 999999999999988877 999999998887654 355799999999999999999999999999999999999865
Q ss_pred CCCcCCC-C-----------------------CCC-----CCCCCCCCcCCCCCCCceEEEeccCCCcCCCCCCChHHHH
Q 002280 628 DGSIMDN-S-----------------------GNP-----PFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVE 678 (943)
Q Consensus 628 ~~~~~~~-~-----------------------~~~-----~~~~ip~~~~~~~~~ps~vL~L~Nlv~~~~l~~i~~~~~~ 678 (943)
+.-.... . .+. +..++|.........|..+|++.|+....+.
T Consensus 90 ~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~--------- 160 (221)
T KOG4206|consen 90 DSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESES--------- 160 (221)
T ss_pred ccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhH---------
Confidence 4322111 0 000 0011111111112567889999998653332
Q ss_pred HHHHHHHHHhcCCCCeEEEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCCccCC
Q 002280 679 EVLEDVRLECARFGSVKSVNVVKYGDSNISTIQACEGNENTASAGVGQNLTNDETNE 735 (943)
Q Consensus 679 ei~eDlre~fskFG~V~~V~I~r~~~g~~~G~~FVeF~~~e~A~~Ai~~LnGr~~~~ 735 (943)
+-+..+|+.|.....|.+... ..+.+||+|.+...|..|.++|.|..|.-
T Consensus 161 ---e~l~~lf~qf~g~keir~i~~----~~~iAfve~~~d~~a~~a~~~lq~~~it~ 210 (221)
T KOG4206|consen 161 ---EMLSDLFEQFPGFKEIRLIPP----RSGIAFVEFLSDRQASAAQQALQGFKITK 210 (221)
T ss_pred ---HHHHHHHhhCcccceeEeccC----CCceeEEecchhhhhHHHhhhhccceecc
Confidence 234556788888888887663 45678999999999999999999999884
No 56
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.33 E-value=1.3e-10 Score=125.67 Aligned_cols=250 Identities=20% Similarity=0.254 Sum_probs=175.6
Q ss_pred CCCCCeEEEcCCC--CCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCC-eeeEEeCCHHHHHHHHH-ccCCcc
Q 002280 460 NRPMRRLCVENLP--LSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKG-QAFVEFLTAEDASAALC-CDGCSF 535 (943)
Q Consensus 460 ~~~~rtLfVgNLP--~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skG-yAFVeF~s~edA~~Al~-LnG~~l 535 (943)
..++..|.+.=|. +.+|-+-|..+.+.+| .|..+.+.+-.| .|.|||.+.+.|++|.+ |||..|
T Consensus 117 ~~pN~VLl~TIlNp~YpItvDVly~Icnp~G------------kVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGADI 184 (494)
T KOG1456|consen 117 ATPNKVLLFTILNPQYPITVDVLYTICNPQG------------KVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADI 184 (494)
T ss_pred CCCCeEEEEEeecCccccchhhhhhhcCCCC------------ceEEEEEEeccceeeEEeechhHHHHHHHhhcccccc
Confidence 3445555555444 5799999999998877 445555544344 69999999999999999 999765
Q ss_pred -cc-ccccccCCc--------------cceeE------------------------------------------------
Q 002280 536 -SG-SILKIKRPK--------------EFVEV------------------------------------------------ 551 (943)
Q Consensus 536 -~G-r~LkV~rp~--------------d~~~~------------------------------------------------ 551 (943)
.| .+|+|..++ ||.-+
T Consensus 185 YsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~ 264 (494)
T KOG1456|consen 185 YSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPP 264 (494)
T ss_pred cccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCC
Confidence 34 456665211 01000
Q ss_pred ------------------------EEEEecCCC-CCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHH
Q 002280 552 ------------------------AIFIGGISR-TLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKA 606 (943)
Q Consensus 552 ------------------------~LfV~NLp~-~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kA 606 (943)
.++|.+|.. .++.+.|..+|..||.|..|++++. ..|.|+|++.+....++|
T Consensus 265 P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkT---k~gtamVemgd~~aver~ 341 (494)
T KOG1456|consen 265 PSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKT---KPGTAMVEMGDAYAVERA 341 (494)
T ss_pred CCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeec---ccceeEEEcCcHHHHHHH
Confidence 788999986 6778899999999999999999875 578999999999999999
Q ss_pred HHHhCCCccCCeEEEEEEcccCCCcCC----------------CCCCCCCCCCCCCcCCCCCCCceEEEeccCCCcCCCC
Q 002280 607 IAGLNGLKVGGQVLTAVQAVLDGSIMD----------------NSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFS 670 (943)
Q Consensus 607 l~~LnG~~~~gr~L~V~~A~~~~~~~~----------------~~~~~~~~~ip~~~~~~~~~ps~vL~L~Nlv~~~~l~ 670 (943)
+..||+..+-|.+|.|..+........ ...+..|..-.+++....+.|++||...|..- .
T Consensus 342 v~hLnn~~lfG~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~--~-- 417 (494)
T KOG1456|consen 342 VTHLNNIPLFGGKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPL--G-- 417 (494)
T ss_pred HHHhccCccccceEEEeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCC--c--
Confidence 999999999999999987643322111 01122232223344555788999999999743 3
Q ss_pred CCChHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCCccCCC
Q 002280 671 SLSELEVEEVLEDVRLECARFGSVKSVNVVKYGDSNISTIQACEGNENTASAGVGQNLTNDETNEK 736 (943)
Q Consensus 671 ~i~~~~~~ei~eDlre~fskFG~V~~V~I~r~~~g~~~G~~FVeF~~~e~A~~Ai~~LnGr~~~~k 736 (943)
|+++.+.+|+.+... .-.+|+|..-.. .-...|.++|++.++|..|+..||-..+.+.
T Consensus 418 -vtEe~l~~i~nek~v------~~~svkvFp~ks-erSssGllEfe~~s~Aveal~~~NH~pi~~p 475 (494)
T KOG1456|consen 418 -VTEEQLIGICNEKDV------PPTSVKVFPLKS-ERSSSGLLEFENKSDAVEALMKLNHYPIEGP 475 (494)
T ss_pred -cCHHHHHHHhhhcCC------CcceEEeecccc-cccccceeeeehHHHHHHHHHHhccccccCC
Confidence 355555555543321 135666654322 1223468999999999999999998888654
No 57
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.24 E-value=2.7e-11 Score=103.82 Aligned_cols=69 Identities=20% Similarity=0.467 Sum_probs=65.1
Q ss_pred EEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec-CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEE
Q 002280 553 IFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN-EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLT 621 (943)
Q Consensus 553 LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d-~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~ 621 (943)
|||+|||..+++++|+++|++||.|..+.+..+ .+..+|+|||+|.+.++|.+|+..|+|..++|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999885 566799999999999999999999999999999885
No 58
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.22 E-value=1.8e-11 Score=121.52 Aligned_cols=79 Identities=19% Similarity=0.299 Sum_probs=67.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccccccc
Q 002280 462 PMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSIL 540 (943)
Q Consensus 462 ~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~L 540 (943)
..++|||+|||+.+|+++|+++|.+||.+.. + ..+.+..++.++|||||+|.+.++|+.||. ||+..|.|+.|
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~---v---~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l 106 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVD---A---KVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHI 106 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEE---E---EEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 4568999999999999999999999885332 2 244566678899999999999999999998 99999999999
Q ss_pred cccCCc
Q 002280 541 KIKRPK 546 (943)
Q Consensus 541 kV~rp~ 546 (943)
+|.+..
T Consensus 107 ~V~~a~ 112 (144)
T PLN03134 107 RVNPAN 112 (144)
T ss_pred EEEeCC
Confidence 998654
No 59
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.18 E-value=7.2e-10 Score=110.02 Aligned_cols=170 Identities=17% Similarity=0.229 Sum_probs=121.3
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCCCc
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGSI 631 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~~~ 631 (943)
+|||+|||..+-+.+|.++|.+||.|..|.|... -...+||||+|+++.+|+.||..-+|..+.|..|.|.++--....
T Consensus 8 ~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r-~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprggr~s 86 (241)
T KOG0105|consen 8 RIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR-PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGGRSS 86 (241)
T ss_pred eEEecCCCcchhhccHHHHHhhhcceEEEEeccC-CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccCCCcc
Confidence 8999999999999999999999999999987543 223679999999999999999999999999999999987543321
Q ss_pred CCCCCCC---CCCCCC-C-CcCCCCCCCceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCC
Q 002280 632 MDNSGNP---PFHGIP-K-HALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYGDSN 706 (943)
Q Consensus 632 ~~~~~~~---~~~~ip-~-~~~~~~~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskFG~V~~V~I~r~~~g~ 706 (943)
...-++- .-.+-+ . .-.+.+.....-+++..|...... .||+.+.-+-|.|-...+.++.
T Consensus 87 ~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSW------------QDLKDHmReaGdvCfadv~rDg--- 151 (241)
T KOG0105|consen 87 SDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSW------------QDLKDHMREAGDVCFADVQRDG--- 151 (241)
T ss_pred cccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCch------------HHHHHHHHhhCCeeeeeeeccc---
Confidence 1100000 000000 0 000111122234556777654443 4666666777999888888853
Q ss_pred cceeEEEEeCCHHHHHHHHHHhCCCccCCCceEE
Q 002280 707 ISTIQACEGNENTASAGVGQNLTNDETNEKGERL 740 (943)
Q Consensus 707 ~~G~~FVeF~~~e~A~~Ai~~LnGr~~~~k~~~v 740 (943)
++.|+|...++.+-|+..|....|-....+.
T Consensus 152 ---~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~ 182 (241)
T KOG0105|consen 152 ---VGVVEYLRKEDMKYAVRKLDDQKFRSEGETA 182 (241)
T ss_pred ---ceeeeeeehhhHHHHHHhhccccccCcCcEe
Confidence 5678999999999999999988887655554
No 60
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.18 E-value=7.2e-11 Score=129.95 Aligned_cols=164 Identities=15% Similarity=0.146 Sum_probs=129.4
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDG 629 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~ 629 (943)
+|||++|++.++++.|++.|.+||.|..+.++++ ++.++||+||+|.+++.+..+|.. .-..|.|+.|.+..|.+..
T Consensus 8 KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av~r~ 86 (311)
T KOG4205|consen 8 KLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAVSRE 86 (311)
T ss_pred ceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceeccCcc
Confidence 8999999999999999999999999999999998 456799999999999999988863 3467899999998887644
Q ss_pred CcCCCCCCCCCCCCCCCcCCCCCCCceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhcCCCCeEEEEEecC-CCCCcc
Q 002280 630 SIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKY-GDSNIS 708 (943)
Q Consensus 630 ~~~~~~~~~~~~~ip~~~~~~~~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskFG~V~~V~I~r~-~~g~~~ 708 (943)
...... ....++.++|..+....+. +++++.|++||.|..+.|+.+ .....+
T Consensus 87 ~~~~~~---------------~~~~tkkiFvGG~~~~~~e------------~~~r~yfe~~g~v~~~~~~~d~~~~~~r 139 (311)
T KOG4205|consen 87 DQTKVG---------------RHLRTKKIFVGGLPPDTTE------------EDFKDYFEQFGKVADVVIMYDKTTSRPR 139 (311)
T ss_pred cccccc---------------cccceeEEEecCcCCCCch------------HHHhhhhhccceeEeeEEeecccccccc
Confidence 321111 0125778888877443332 689999999999999998876 466688
Q ss_pred eeEEEEeCCHHHHHHHHHHhCCCccCCCceEEEEec
Q 002280 709 TIQACEGNENTASAGVGQNLTNDETNEKGERLEEVT 744 (943)
Q Consensus 709 G~~FVeF~~~e~A~~Ai~~LnGr~~~~k~~~v~~~~ 744 (943)
||+||.|.+.+...+++ ...-..|+++++.+.-++
T Consensus 140 gFgfv~~~~e~sVdkv~-~~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 140 GFGFVTFDSEDSVDKVT-LQKFHDFNGKKVEVKRAI 174 (311)
T ss_pred cceeeEeccccccceec-ccceeeecCceeeEeecc
Confidence 99999999988776664 445677778877765554
No 61
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.18 E-value=2.4e-11 Score=126.27 Aligned_cols=143 Identities=21% Similarity=0.335 Sum_probs=119.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccccccccc
Q 002280 464 RRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSILKI 542 (943)
Q Consensus 464 rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~LkV 542 (943)
.+||||+||+.+.+.+|..||..||.+..+ .+ -.||+||+|.+..+|.-|+. |||..|.|-.+.|
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~-------~m-------k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vv 67 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDA-------DM-------KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVV 67 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccc-------ee-------ecccceeccCchhhhhcccchhcCceecceeeee
Confidence 479999999999999999999998863321 11 16789999999999999999 9999998887666
Q ss_pred cCCcc---------------c----ee-----EEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeec
Q 002280 543 KRPKE---------------F----VE-----VAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYV 598 (943)
Q Consensus 543 ~rp~d---------------~----~~-----~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~ 598 (943)
..+.. + .. ..|+|.+++..+.+.+|.+.|..+|.+....+ ..+++||+|.
T Consensus 68 e~~r~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~------~~~~~~v~Fs 141 (216)
T KOG0106|consen 68 EHARGKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA------RRNFAFVEFS 141 (216)
T ss_pred ecccccccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh------hccccceeeh
Confidence 64441 1 01 18899999999999999999999999844433 4689999999
Q ss_pred ChhHHHHHHHHhCCCccCCeEEEEEEcc
Q 002280 599 DQLVTPKAIAGLNGLKVGGQVLTAVQAV 626 (943)
Q Consensus 599 ~~e~A~kAl~~LnG~~~~gr~L~V~~A~ 626 (943)
..++|..|+..|+|..+.++.|.+..+.
T Consensus 142 ~~~da~ra~~~l~~~~~~~~~l~~~~~~ 169 (216)
T KOG0106|consen 142 EQEDAKRALEKLDGKKLNGRRISVEKNS 169 (216)
T ss_pred hhhhhhhcchhccchhhcCceeeecccC
Confidence 9999999999999999999999995443
No 62
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.15 E-value=7e-11 Score=122.80 Aligned_cols=160 Identities=15% Similarity=0.165 Sum_probs=119.1
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCCCc
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGSI 631 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~~~ 631 (943)
.+||++||+.+.+.+|..+|..||.|..+.+. .||+||+|.+..+|..|+..|||..|.|-.+.|.++....-.
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~ 76 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMK------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRG 76 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceee------cccceeccCchhhhhcccchhcCceecceeeeeecccccccc
Confidence 68999999999999999999999999988763 479999999999999999999999999988888887643221
Q ss_pred CCCCCCCCCCC-CCC-C-cCCCCCCCceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCcc
Q 002280 632 MDNSGNPPFHG-IPK-H-ALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYGDSNIS 708 (943)
Q Consensus 632 ~~~~~~~~~~~-ip~-~-~~~~~~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskFG~V~~V~I~r~~~g~~~ 708 (943)
.+.. ..+ -+. . ..........++++.|+-. ..-+.||...|++||.+..+.+ ..
T Consensus 77 ~g~~----~~g~r~~~~~~~~~p~~s~~r~~~~~~~~------------r~~~qdl~d~~~~~g~~~~~~~-------~~ 133 (216)
T KOG0106|consen 77 RGRP----RGGDRRSDSRRYRPPSRTHFRLIVRNLSL------------RVSWQDLKDHFRPAGEVTYVDA-------RR 133 (216)
T ss_pred cCCC----CCCCccchhhccCCcccccceeeeccchh------------hhhHHHHhhhhcccCCCchhhh-------hc
Confidence 1000 000 000 0 0000112234455555432 1123578899999999965544 35
Q ss_pred eeEEEEeCCHHHHHHHHHHhCCCccCCCceEE
Q 002280 709 TIQACEGNENTASAGVGQNLTNDETNEKGERL 740 (943)
Q Consensus 709 G~~FVeF~~~e~A~~Ai~~LnGr~~~~k~~~v 740 (943)
+++||+|.+.++|..|+..|+|.+++++.+++
T Consensus 134 ~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~ 165 (216)
T KOG0106|consen 134 NFAFVEFSEQEDAKRALEKLDGKKLNGRRISV 165 (216)
T ss_pred cccceeehhhhhhhhcchhccchhhcCceeee
Confidence 67899999999999999999999999999888
No 63
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.12 E-value=2.7e-10 Score=132.98 Aligned_cols=98 Identities=18% Similarity=0.254 Sum_probs=77.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcccccccc
Q 002280 463 MRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSILK 541 (943)
Q Consensus 463 ~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~Lk 541 (943)
++|||||+|+..++|.+|..+|+.|| .|..+.....+|+|||.+....+|.+||. |+...+.++.|+
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefG------------eiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Ik 488 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFG------------EIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIK 488 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcc------------cceeEeeccCCceeEEEEeehhHHHHHHHHHhcccccceeeE
Confidence 47999999999999999999999999 45566667789999999999999999999 999999999999
Q ss_pred ccCCcc---------ceeEEEEEecCCCCCCHHHHHHHHh
Q 002280 542 IKRPKE---------FVEVAIFIGGISRTLSSKMVMEIVC 572 (943)
Q Consensus 542 V~rp~d---------~~~~~LfV~NLp~~~teedL~e~Fs 572 (943)
|.|.-. |....+=|.-||+..-..+|..+|.
T Consensus 489 i~Wa~g~G~kse~k~~wD~~lGVt~IP~~kLt~dl~~~~e 528 (894)
T KOG0132|consen 489 IAWAVGKGPKSEYKDYWDVELGVTYIPWEKLTDDLEAWCE 528 (894)
T ss_pred EeeeccCCcchhhhhhhhcccCeeEeehHhcCHHHHHhhh
Confidence 887432 2222344555666433344666554
No 64
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.11 E-value=1.6e-10 Score=123.69 Aligned_cols=98 Identities=15% Similarity=0.211 Sum_probs=86.1
Q ss_pred cCCccccccccccCCcc----ceeEEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHH
Q 002280 531 DGCSFSGSILKIKRPKE----FVEVAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKA 606 (943)
Q Consensus 531 nG~~l~Gr~LkV~rp~d----~~~~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kA 606 (943)
+|-...|.++.+.++.. ..+.+|+|+|||+..-+-||+.+|.+||+|.+|.|+.+...+|||+||+|++.++|++|
T Consensus 73 ~~~~t~g~~~~~~~st~s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRA 152 (376)
T KOG0125|consen 73 NGAPTDGQPIQTQPSTNSSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRA 152 (376)
T ss_pred CCCCCCCCccccCCCCcCCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHH
Confidence 44556677777665432 34459999999999999999999999999999999998888999999999999999999
Q ss_pred HHHhCCCccCCeEEEEEEcccC
Q 002280 607 IAGLNGLKVGGQVLTAVQAVLD 628 (943)
Q Consensus 607 l~~LnG~~~~gr~L~V~~A~~~ 628 (943)
-+.|||..+.||+|.|..|.+.
T Consensus 153 Ra~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 153 RAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred HHHhhcceeeceEEEEeccchh
Confidence 9999999999999999988664
No 65
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.09 E-value=9.4e-11 Score=100.41 Aligned_cols=69 Identities=33% Similarity=0.497 Sum_probs=57.4
Q ss_pred EEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcccccccc
Q 002280 466 LCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSILK 541 (943)
Q Consensus 466 LfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~Lk 541 (943)
|||+|||+.+|+++|+++|++||.+..+ .+..-..+..++||||+|.+.++|..|++ |+|..+.|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~-------~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESI-------KVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEE-------EEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccc-------cccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999999999864221 11111346678999999999999999999 999999999875
No 66
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.06 E-value=2.3e-09 Score=114.37 Aligned_cols=164 Identities=17% Similarity=0.222 Sum_probs=110.6
Q ss_pred EEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEccc-
Q 002280 551 VAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL- 627 (943)
Q Consensus 551 ~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~- 627 (943)
.+|||+|||..+++++|.++|..||.|..+.+..+ ++..+|+|||+|.+.++|..|+..|+|..|.|+.|.|.++.+
T Consensus 116 ~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~~ 195 (306)
T COG0724 116 NTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQPA 195 (306)
T ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeeccccc
Confidence 49999999999999999999999999999999887 477899999999999999999999999999999999998653
Q ss_pred CCCcCCCCC--CCCCCCCCCCcCCCCCCCceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhcCCCCeEEEEEecCCCC
Q 002280 628 DGSIMDNSG--NPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYGDS 705 (943)
Q Consensus 628 ~~~~~~~~~--~~~~~~ip~~~~~~~~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskFG~V~~V~I~r~~~g 705 (943)
......... ...+..-..............+.+.|+...... .++...|..+|.+..+.+.....+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~ 263 (306)
T COG0724 196 SQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAE------------EELADLFKSRGDIVRASLPPSKDG 263 (306)
T ss_pred cccccccccccchhhhccccccccccccccceeeccccccccch------------hHHHHhccccccceeeeccCCCCC
Confidence 111110000 000000000111112334556666666544333 567888999999977777665433
Q ss_pred C-cceeEEEEeCCHHHHHHHHH
Q 002280 706 N-ISTIQACEGNENTASAGVGQ 726 (943)
Q Consensus 706 ~-~~G~~FVeF~~~e~A~~Ai~ 726 (943)
. ...+.++.+.....+..+..
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~ 285 (306)
T COG0724 264 KIPKSRSFVGNEASKDALESNS 285 (306)
T ss_pred cccccccccchhHHHhhhhhhc
Confidence 3 32333444444444444433
No 67
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.03 E-value=8.4e-10 Score=117.68 Aligned_cols=74 Identities=15% Similarity=0.235 Sum_probs=68.8
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEccc
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 627 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~ 627 (943)
+|||+|||+.+++++|+++|+.||.|..|.|+.+.. .+|||||+|.+.++|..||. |||..|.|+.|.|.++..
T Consensus 6 tVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~-~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 6 TVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE-RSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC-CCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 899999999999999999999999999999988753 57999999999999999995 999999999999998743
No 68
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.03 E-value=4.2e-11 Score=118.61 Aligned_cols=74 Identities=24% Similarity=0.432 Sum_probs=71.0
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEc
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQA 625 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A 625 (943)
-|||||||+.+||.||..+|++||.|..|.|++| +|.++||||+.|++..++..|+..|||..|.|+.|+|.+.
T Consensus 37 ~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 37 YIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred EEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 8999999999999999999999999999999999 5678999999999999999999999999999999999865
No 69
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.02 E-value=7.4e-10 Score=95.61 Aligned_cols=69 Identities=20% Similarity=0.433 Sum_probs=62.0
Q ss_pred EEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecC-CCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEE
Q 002280 553 IFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE-DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLT 621 (943)
Q Consensus 553 LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~-~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~ 621 (943)
|||+|||+.+++++|.++|+.||.|..+.+..+. +..+|+|||+|.+.++|.+|+..++|..|.|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999999999999998874 45589999999999999999999999999999874
No 70
>PLN03213 repressor of silencing 3; Provisional
Probab=99.02 E-value=7.8e-10 Score=123.07 Aligned_cols=75 Identities=20% Similarity=0.342 Sum_probs=69.6
Q ss_pred EEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecCh--hHHHHHHHHhCCCccCCeEEEEEEccc
Q 002280 551 VAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQ--LVTPKAIAGLNGLKVGGQVLTAVQAVL 627 (943)
Q Consensus 551 ~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~--e~A~kAl~~LnG~~~~gr~L~V~~A~~ 627 (943)
.+||||||++.+++++|..+|+.||.|..|.|++.++ +|||||+|... .++.+||..|||..+.|+.|+|..|.|
T Consensus 11 MRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 11 VRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccH
Confidence 3899999999999999999999999999999996655 99999999987 679999999999999999999998754
No 71
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.01 E-value=7.8e-10 Score=109.37 Aligned_cols=72 Identities=18% Similarity=0.382 Sum_probs=68.0
Q ss_pred EEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEc
Q 002280 551 VAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQA 625 (943)
Q Consensus 551 ~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A 625 (943)
.+|||+||+..+++.+|..+|..||+|..|.|..+ -.|||||+|+++.+|..|+..|+|..|.|..|.|...
T Consensus 11 ~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn---PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 11 TKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN---PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred ceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec---CCCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 38999999999999999999999999999999775 5799999999999999999999999999999999865
No 72
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.01 E-value=1.7e-09 Score=117.56 Aligned_cols=263 Identities=14% Similarity=0.172 Sum_probs=173.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHHccCCccccccc
Q 002280 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSIL 540 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~LnG~~l~Gr~L 540 (943)
..+..|-..+||+..+..+|..||.- ++...+...+-...-++-.|.|.|.|.+++.-+.|++-+...+.++.|
T Consensus 58 ~~~vvvRaRglpwq~Sd~~ia~ff~g------l~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryi 131 (508)
T KOG1365|consen 58 DDNVVVRARGLPWQSSDQDIARFFKG------LNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYI 131 (508)
T ss_pred CcceEEEecCCCCCcccCCHHHHHhh------hhccccceeeeehhhhccccceEEEecCchhhhhhhHhhhhhccCCce
Confidence 44556778999999999999999943 444443322222233566788999999999999999977778888888
Q ss_pred cccCCcc--c------------------eeEEEEEecCCCCCCHHHHHHHHhhcC----CeeEEEEEec-CCCCCCEEEE
Q 002280 541 KIKRPKE--F------------------VEVAIFIGGISRTLSSKMVMEIVCAFG----PLKAYHFEVN-EDHEEPCAFI 595 (943)
Q Consensus 541 kV~rp~d--~------------------~~~~LfV~NLp~~~teedL~e~Fs~fG----~I~~v~l~~d-~~~skG~aFV 595 (943)
.|-++.. + +...|-+.+||++.++.++.++|..-. ....|-++.. .+.-+|-|||
T Consensus 132 evYka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFv 211 (508)
T KOG1365|consen 132 EVYKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFV 211 (508)
T ss_pred eeeccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEE
Confidence 8775441 1 011677899999999999999997432 2333434433 5667899999
Q ss_pred eecChhHHHHHHHHhCCCccCCeEEEEEEccc--------CCCcCCC---CCCCCCCCCCCCcCCCCCCCceEEEeccCC
Q 002280 596 EYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL--------DGSIMDN---SGNPPFHGIPKHALPLLKKPTEVLKLKNVF 664 (943)
Q Consensus 596 eF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~--------~~~~~~~---~~~~~~~~ip~~~~~~~~~ps~vL~L~Nlv 664 (943)
.|...++|+.||.. |...|+-+-|.+-+++. ....... .......++|..-.+ ...+..||.|..|.
T Consensus 212 lfa~ee~aq~aL~k-hrq~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p-~~~~kdcvRLRGLP 289 (508)
T KOG1365|consen 212 LFACEEDAQFALRK-HRQNIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVP-PTRSKDCVRLRGLP 289 (508)
T ss_pred EecCHHHHHHHHHH-HHHHHhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCC-CCCCCCeeEecCCC
Confidence 99999999999963 33445545444432211 1110000 001111122221111 12346788888886
Q ss_pred CcCCCCCCChHHHHHHHHHHHHHhcCCCC-e--EEEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCceEEE
Q 002280 665 NPEGFSSLSELEVEEVLEDVRLECARFGS-V--KSVNVVKYGDSNISTIQACEGNENTASAGVGQNLTNDETNEKGERLE 741 (943)
Q Consensus 665 ~~~~l~~i~~~~~~ei~eDlre~fskFG~-V--~~V~I~r~~~g~~~G~~FVeF~~~e~A~~Ai~~LnGr~~~~k~~~v~ 741 (943)
.... .+||-..|.-|-. | .-|.+.-+..|.-.|-|||+|.+.+.|..|++..+...-..+.+.|-
T Consensus 290 y~At------------vEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvf 357 (508)
T KOG1365|consen 290 YEAT------------VEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVF 357 (508)
T ss_pred hhhh------------HHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEe
Confidence 5444 3566555555543 2 23778888889989999999999999999999888777667777775
Q ss_pred Ee
Q 002280 742 EV 743 (943)
Q Consensus 742 ~~ 743 (943)
+.
T Consensus 358 p~ 359 (508)
T KOG1365|consen 358 PC 359 (508)
T ss_pred ec
Confidence 54
No 73
>smart00362 RRM_2 RNA recognition motif.
Probab=99.00 E-value=1.8e-09 Score=91.45 Aligned_cols=71 Identities=27% Similarity=0.557 Sum_probs=66.2
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEE
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTA 622 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V 622 (943)
+|+|+|||..+++++|.++|+.||.|..+.+..+.+.++|+|||+|.+.+.|..|+..|+|..+.|+.|.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 58999999999999999999999999999888776667899999999999999999999999999999876
No 74
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.00 E-value=7.6e-10 Score=104.06 Aligned_cols=74 Identities=12% Similarity=0.283 Sum_probs=68.5
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEc
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQA 625 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A 625 (943)
+|||+||++.++||+|.++|++.|.|+.|.+-.| +.+..|||||+|.+.++|..|+.-++|..+..++|.|.+.
T Consensus 38 tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 38 TVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred eEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 9999999999999999999999999999877555 4567899999999999999999999999999999999764
No 75
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=1.2e-09 Score=113.23 Aligned_cols=77 Identities=18% Similarity=0.291 Sum_probs=73.6
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLD 628 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~ 628 (943)
+|-|.||+.++++++|+++|.+||.|..|.|.+| ++.++|||||.|.+.++|.+||..|||+-+..-.|.|.|+.|.
T Consensus 191 tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEwskP~ 269 (270)
T KOG0122|consen 191 TVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWSKPS 269 (270)
T ss_pred eeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEecCCC
Confidence 8999999999999999999999999999999998 5678999999999999999999999999999999999999774
No 76
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=98.99 E-value=5.2e-10 Score=105.15 Aligned_cols=85 Identities=20% Similarity=0.272 Sum_probs=66.6
Q ss_pred ccCCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccc
Q 002280 458 QSNRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFS 536 (943)
Q Consensus 458 ~~~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~ 536 (943)
.+.+.+.|||||||.+.+||++|.++|+.+|.+.-+ - --++..+...-|||||+|.+.++|..||. ++|..|.
T Consensus 31 ~a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irri---i---MGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLd 104 (153)
T KOG0121|consen 31 EALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRI---I---MGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLD 104 (153)
T ss_pred HHHhhcceEEEeeeeeeecHHHHHHHHHhccchhee---E---eccccCCcCccceEEEEEecchhHHHHHHHhccCccc
Confidence 345778999999999999999999999998843221 0 00222334456899999999999999999 9999999
Q ss_pred cccccccCCccc
Q 002280 537 GSILKIKRPKEF 548 (943)
Q Consensus 537 Gr~LkV~rp~d~ 548 (943)
.++|.|-+-..+
T Consensus 105 dr~ir~D~D~GF 116 (153)
T KOG0121|consen 105 DRPIRIDWDAGF 116 (153)
T ss_pred ccceeeeccccc
Confidence 999998754443
No 77
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.98 E-value=1.5e-09 Score=115.81 Aligned_cols=115 Identities=21% Similarity=0.338 Sum_probs=96.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcccccccc
Q 002280 463 MRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSILK 541 (943)
Q Consensus 463 ~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~Lk 541 (943)
..+|||+|||+.+|+++|.++|..||.+..+ ..+.+..++.++|||||+|.+.++|..|+. ++|..|.|+.|.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~------~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~ 188 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRV------RLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLR 188 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEE------EeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeE
Confidence 6899999999999999999999999975332 133444678999999999999999999999 999999999999
Q ss_pred ccCCc----c---ce---------------------eEEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEE
Q 002280 542 IKRPK----E---FV---------------------EVAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFE 583 (943)
Q Consensus 542 V~rp~----d---~~---------------------~~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~ 583 (943)
|.... . .. ...+++.+++..++..++..+|..+|.+....+.
T Consensus 189 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (306)
T COG0724 189 VQKAQPASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLP 258 (306)
T ss_pred eeccccccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeecc
Confidence 88621 0 11 0089999999999999999999999999655543
No 78
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.97 E-value=1.2e-08 Score=112.43 Aligned_cols=176 Identities=17% Similarity=0.210 Sum_probs=125.0
Q ss_pred EEEEecCCCCCCHHHHHHHHh-hcCCeeEEEEEec-CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCC
Q 002280 552 AIFIGGISRTLSSKMVMEIVC-AFGPLKAYHFEVN-EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDG 629 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs-~fG~I~~v~l~~d-~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~ 629 (943)
.+||.|||+++.|++|+++|. +.|.|..|.|+.| .+..+|||.|+|.+++.+++|++.||.+.+.|++|.|.---...
T Consensus 46 ~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d~q 125 (608)
T KOG4212|consen 46 SVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHDEQ 125 (608)
T ss_pred eEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCchh
Confidence 699999999999999999996 5799999999988 57889999999999999999999999999999999996321100
Q ss_pred Cc----------------CCCC-CC-------------------------------CC------------CCCCCCCcCC
Q 002280 630 SI----------------MDNS-GN-------------------------------PP------------FHGIPKHALP 649 (943)
Q Consensus 630 ~~----------------~~~~-~~-------------------------------~~------------~~~ip~~~~~ 649 (943)
.. ...+ ++ .. +.++......
T Consensus 126 ~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~Flr 205 (608)
T KOG4212|consen 126 RDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSASFLR 205 (608)
T ss_pred hhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhhhhh
Confidence 00 0000 00 00 0000000000
Q ss_pred ---CCCCC-ceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCcceeEEEEeCCHHHHHHHH
Q 002280 650 ---LLKKP-TEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYGDSNISTIQACEGNENTASAGVG 725 (943)
Q Consensus 650 ---~~~~p-s~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskFG~V~~V~I~r~~~g~~~G~~FVeF~~~e~A~~Ai 725 (943)
....| ...++|.||-.... -+.|++.|.--|.|+.|.+--+..|...||+.|+|..+-+|-+||
T Consensus 206 ~~h~f~pPl~~k~fvanl~~~vg------------~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaI 273 (608)
T KOG4212|consen 206 SLHIFSPPLHNKVFVANLDYKVG------------NKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAI 273 (608)
T ss_pred hccCCCCCccceeeeeccccccc------------hHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHH
Confidence 00111 11233455422111 256788888899999999888888899999999999999999999
Q ss_pred HHhCCCccCCCceE
Q 002280 726 QNLTNDETNEKGER 739 (943)
Q Consensus 726 ~~LnGr~~~~k~~~ 739 (943)
..|++--..++..+
T Consensus 274 sml~~~g~~~~~~~ 287 (608)
T KOG4212|consen 274 SMLDRQGLFDRRMT 287 (608)
T ss_pred HhhccCCCccccce
Confidence 99997655555544
No 79
>PLN03120 nucleic acid binding protein; Provisional
Probab=98.95 E-value=1.5e-09 Score=115.86 Aligned_cols=75 Identities=21% Similarity=0.290 Sum_probs=64.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeee---ecCCCeeeEEeCCHHHHHHHHHccCCcccccc
Q 002280 463 MRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVI---QREKGQAFVEFLTAEDASAALCCDGCSFSGSI 539 (943)
Q Consensus 463 ~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~---~~skGyAFVeF~s~edA~~Al~LnG~~l~Gr~ 539 (943)
.++|||+|||+.+|+++|+++|+.||.+ .++.+ +..+|||||+|.++++|..||.|||..|.|+.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I------------~~V~I~~d~~~~GfAFVtF~d~eaAe~AllLnG~~l~gr~ 71 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDI------------EYVEMQSENERSQIAYVTFKDPQGAETALLLSGATIVDQS 71 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCe------------EEEEEeecCCCCCEEEEEeCcHHHHHHHHHhcCCeeCCce
Confidence 4799999999999999999999999853 33322 22579999999999999999999999999999
Q ss_pred ccccCCccce
Q 002280 540 LKIKRPKEFV 549 (943)
Q Consensus 540 LkV~rp~d~~ 549 (943)
|.|.+..+|.
T Consensus 72 V~Vt~a~~~~ 81 (260)
T PLN03120 72 VTITPAEDYQ 81 (260)
T ss_pred EEEEeccCCC
Confidence 9999876653
No 80
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.94 E-value=2.9e-09 Score=96.68 Aligned_cols=75 Identities=17% Similarity=0.319 Sum_probs=68.6
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEccc
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 627 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~ 627 (943)
-|||.|||+.+|.+++.++|.+||.|..|+|-.. ...+|.|||.|++..+|.+|+..|+|..+.++.|.|.+..+
T Consensus 20 iLyirNLp~~ITseemydlFGkyg~IrQIRiG~~-k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 20 ILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNT-KETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred eEEEecCCccccHHHHHHHhhcccceEEEEecCc-cCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 8999999999999999999999999999998443 33589999999999999999999999999999999987654
No 81
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.93 E-value=1.4e-08 Score=103.69 Aligned_cols=168 Identities=13% Similarity=0.232 Sum_probs=115.9
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecC---CCCCCEEEEeecChhHHHHHHHHhCCCccC---CeEEEEEEc
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE---DHEEPCAFIEYVDQLVTPKAIAGLNGLKVG---GQVLTAVQA 625 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~---~~skG~aFVeF~~~e~A~kAl~~LnG~~~~---gr~L~V~~A 625 (943)
+|||.+||.++...+|+.+|..|-..+...|.... ...+.+|||.|.+..+|..|+++|||+.|+ +.+|.+..|
T Consensus 36 TLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiElA 115 (284)
T KOG1457|consen 36 TLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIELA 115 (284)
T ss_pred eeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEeeeh
Confidence 99999999999999999999998666666553331 123579999999999999999999999984 778888877
Q ss_pred ccCCCcCCCC-----C---------C-----------------CC--CC------CC------------------CCCcC
Q 002280 626 VLDGSIMDNS-----G---------N-----------------PP--FH------GI------------------PKHAL 648 (943)
Q Consensus 626 ~~~~~~~~~~-----~---------~-----------------~~--~~------~i------------------p~~~~ 648 (943)
..+....... + . .+ ++ .+ |....
T Consensus 116 KSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~a~a 195 (284)
T KOG1457|consen 116 KSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPSANA 195 (284)
T ss_pred hcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCcccc
Confidence 5433211000 0 0 00 00 00 00000
Q ss_pred CC--------CCCCceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCcceeEEEEeCCHHH
Q 002280 649 PL--------LKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYGDSNISTIQACEGNENTA 720 (943)
Q Consensus 649 ~~--------~~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskFG~V~~V~I~r~~~g~~~G~~FVeF~~~e~ 720 (943)
.+ ......+|+|-||-...+ ++.|+.+|+.|-...-++|--. +|. ..+||+|++++.
T Consensus 196 ~l~ks~q~~~~~~acstlfianl~~~~~------------ed~l~~~~~~~~gf~~l~~~~~-~g~--~vaf~~~~~~~~ 260 (284)
T KOG1457|consen 196 HLEKSSQGGSGARACSTLFIANLGPNCT------------EDELKQLLSRYPGFHILKIRAR-GGM--PVAFADFEEIEQ 260 (284)
T ss_pred hhhhhhcccccchhhhhHhhhccCCCCC------------HHHHHHHHHhCCCceEEEEecC-CCc--ceEeecHHHHHH
Confidence 00 012234678888754333 2678999999987777777542 222 368999999999
Q ss_pred HHHHHHHhCCCccC
Q 002280 721 SAGVGQNLTNDETN 734 (943)
Q Consensus 721 A~~Ai~~LnGr~~~ 734 (943)
|..||..|.|..+.
T Consensus 261 at~am~~lqg~~~s 274 (284)
T KOG1457|consen 261 ATDAMNHLQGNLLS 274 (284)
T ss_pred HHHHHHHhhcceec
Confidence 99999999998875
No 82
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.89 E-value=2.2e-09 Score=108.43 Aligned_cols=76 Identities=13% Similarity=0.242 Sum_probs=72.1
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEccc
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 627 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~ 627 (943)
.|.|-||.+-++.++|+.+|++||.|-+|.|+.| +..++|||||.|.+..+|+.|+.+|+|..|.|+.|.|+.|.-
T Consensus 15 SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ary 92 (256)
T KOG4207|consen 15 SLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMARY 92 (256)
T ss_pred eEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhhc
Confidence 8999999999999999999999999999999998 567899999999999999999999999999999999987743
No 83
>smart00361 RRM_1 RNA recognition motif.
Probab=98.88 E-value=5.4e-09 Score=90.87 Aligned_cols=62 Identities=11% Similarity=0.028 Sum_probs=52.7
Q ss_pred HHHHHHHHHhcCCCCeEEEE-EecC-CC--CCcceeEEEEeCCHHHHHHHHHHhCCCccCCCceEE
Q 002280 679 EVLEDVRLECARFGSVKSVN-VVKY-GD--SNISTIQACEGNENTASAGVGQNLTNDETNEKGERL 740 (943)
Q Consensus 679 ei~eDlre~fskFG~V~~V~-I~r~-~~--g~~~G~~FVeF~~~e~A~~Ai~~LnGr~~~~k~~~v 740 (943)
+|.+.+.++|++||+|.+|. |+.+ .. +..+|||||+|.+.++|.+|+..|||+.|.++.+++
T Consensus 4 ~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 4 DFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred hHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 45567788888999999995 4443 33 778999999999999999999999999999998765
No 84
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.87 E-value=7.4e-09 Score=108.84 Aligned_cols=73 Identities=14% Similarity=0.151 Sum_probs=67.3
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcc
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAV 626 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~ 626 (943)
+|||+||++.+|+++|+++|+.||.|..|.|+++. ...++|||+|.++++|..|+ .|+|..|.++.|.|..+.
T Consensus 7 TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~-et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 7 TAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG-EYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred EEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC-CcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 89999999999999999999999999999999883 34589999999999999999 599999999999998653
No 85
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=98.86 E-value=3.1e-09 Score=91.74 Aligned_cols=69 Identities=33% Similarity=0.448 Sum_probs=52.5
Q ss_pred EEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcccccccc
Q 002280 466 LCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSILK 541 (943)
Q Consensus 466 LfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~Lk 541 (943)
|||+|||+.+|+++|+++|+.||.+..+ . .+.+.. +..+++|||+|.+.++|..|+. ++|..|.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v---~---~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKV---R---LIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEE---E---EEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceE---E---EEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999999888742211 0 111112 4568999999999999999999 777999998874
No 86
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.86 E-value=5.7e-09 Score=110.82 Aligned_cols=74 Identities=19% Similarity=0.334 Sum_probs=71.1
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEc
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQA 625 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A 625 (943)
||||+-|++.++|..|+..|+.||+|+.|.|+.+ ++.++|||||+|.+..+...|....+|.+|.|+.|.|.+-
T Consensus 103 TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 103 TLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred eeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 9999999999999999999999999999999998 6788999999999999999999999999999999999754
No 87
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.85 E-value=4.2e-08 Score=110.58 Aligned_cols=168 Identities=10% Similarity=0.046 Sum_probs=127.8
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCCCc
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGSI 631 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~~~ 631 (943)
-|.+.+||+.+|+++|+++|+.++ |..+.+.+.++...|-|||+|.+.+++.+|++ .+-..++.+-|.|-.+.+....
T Consensus 12 ~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~~e~d 89 (510)
T KOG4211|consen 12 EVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGGAEAD 89 (510)
T ss_pred EEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCCcccc
Confidence 677899999999999999999986 66788888778889999999999999999997 7778888899999866443321
Q ss_pred CCCCCCCCCCCCCCCcCCCCCCCceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhcCCCCeEE-EEEecCCCCCccee
Q 002280 632 MDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKS-VNVVKYGDSNISTI 710 (943)
Q Consensus 632 ~~~~~~~~~~~ip~~~~~~~~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskFG~V~~-V~I~r~~~g~~~G~ 710 (943)
.... . ..+....+..||.|..|...... +||.+.|+..=-|.. |.++.+..+...|-
T Consensus 90 ~~~~------~----~g~~s~~~d~vVRLRGLPfscte------------~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGE 147 (510)
T KOG4211|consen 90 WVMR------P----GGPNSSANDGVVRLRGLPFSCTE------------EDIVEFFAGLEIVPDGILLPMDQRGRPTGE 147 (510)
T ss_pred cccc------C----CCCCCCCCCceEEecCCCccCcH------------HHHHHHhcCCcccccceeeeccCCCCcccc
Confidence 1100 0 01112245678999998664443 688888887766655 55777788888899
Q ss_pred EEEEeCCHHHHHHHHHHhCCCccCCCceEEEEec
Q 002280 711 QACEGNENTASAGVGQNLTNDETNEKGERLEEVT 744 (943)
Q Consensus 711 ~FVeF~~~e~A~~Ai~~LnGr~~~~k~~~v~~~~ 744 (943)
|||+|++.+.|++|++-- -..|+-+.|.|-.+.
T Consensus 148 AfVqF~sqe~ae~Al~rh-re~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 148 AFVQFESQESAEIALGRH-RENIGHRYIEVFRSS 180 (510)
T ss_pred eEEEecCHHHHHHHHHHH-HHhhccceEEeehhH
Confidence 999999999999997654 356777777765543
No 88
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.84 E-value=6.8e-09 Score=109.11 Aligned_cols=79 Identities=20% Similarity=0.153 Sum_probs=65.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHHccCCcccccccc
Q 002280 462 PMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSILK 541 (943)
Q Consensus 462 ~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~LnG~~l~Gr~Lk 541 (943)
...+|||+||++.+|+++|++||+.||.+..+.. +. -+..++||||+|.++++|..||.|||..|.|++|.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I------~~---D~et~gfAfVtF~d~~aaetAllLnGa~l~d~~I~ 74 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEI------IR---SGEYACTAYVTFKDAYALETAVLLSGATIVDQRVC 74 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEE------ec---CCCcceEEEEEECCHHHHHHHHhcCCCeeCCceEE
Confidence 3479999999999999999999999996433211 11 14556899999999999999999999999999999
Q ss_pred ccCCccce
Q 002280 542 IKRPKEFV 549 (943)
Q Consensus 542 V~rp~d~~ 549 (943)
|.+..+|.
T Consensus 75 It~~~~y~ 82 (243)
T PLN03121 75 ITRWGQYE 82 (243)
T ss_pred EEeCcccc
Confidence 99877654
No 89
>smart00360 RRM RNA recognition motif.
Probab=98.83 E-value=1.5e-08 Score=85.37 Aligned_cols=68 Identities=21% Similarity=0.440 Sum_probs=62.7
Q ss_pred EecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEE
Q 002280 555 IGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTA 622 (943)
Q Consensus 555 V~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V 622 (943)
|+|||..+++++|+++|+.||.|..+.+..+ .+.++|+|||+|.+.++|..|+..|+|..+.|+.|.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 5799999999999999999999999998876 3566899999999999999999999999999999876
No 90
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.82 E-value=1.9e-10 Score=114.06 Aligned_cols=87 Identities=13% Similarity=0.204 Sum_probs=77.1
Q ss_pred ccccCCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCc
Q 002280 456 LTQSNRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCS 534 (943)
Q Consensus 456 ~~~~~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~ 534 (943)
+.+....+.-|||||||+.+||.+|.-+|++||.++.+ ++|.+..||.|+||||+.|.+.-++..|+. |||+.
T Consensus 28 WH~~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdi------nLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGik 101 (219)
T KOG0126|consen 28 WHQEYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDI------NLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIK 101 (219)
T ss_pred hhhhcccceEEEECCCcccccCCcEEEEeeccCceEEE------EEEecCCCCcccceEEEEecCccceEEEEeccCCce
Confidence 44556677889999999999999999999999975543 477889999999999999999999999999 99999
Q ss_pred cccccccccCCccc
Q 002280 535 FSGSILKIKRPKEF 548 (943)
Q Consensus 535 l~Gr~LkV~rp~d~ 548 (943)
|.|+.|+|-....|
T Consensus 102 i~gRtirVDHv~~Y 115 (219)
T KOG0126|consen 102 ILGRTIRVDHVSNY 115 (219)
T ss_pred ecceeEEeeecccc
Confidence 99999999876555
No 91
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.82 E-value=9.5e-09 Score=97.47 Aligned_cols=78 Identities=22% Similarity=0.393 Sum_probs=72.0
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDG 629 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~ 629 (943)
.|||.++...+++++|.+.|..||+|+.|.|-.| ++-.+|||+|+|.+...|++|+.+|||..|.|++|.|.|+....
T Consensus 74 Ii~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv~g 153 (170)
T KOG0130|consen 74 IIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFVKG 153 (170)
T ss_pred EEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEecC
Confidence 8999999999999999999999999999988776 45569999999999999999999999999999999999985433
No 92
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.80 E-value=1.3e-08 Score=84.22 Aligned_cols=55 Identities=15% Similarity=0.146 Sum_probs=49.3
Q ss_pred HHHHhcCCCCeEEEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCceEEEE
Q 002280 684 VRLECARFGSVKSVNVVKYGDSNISTIQACEGNENTASAGVGQNLTNDETNEKGERLEE 742 (943)
Q Consensus 684 lre~fskFG~V~~V~I~r~~~g~~~G~~FVeF~~~e~A~~Ai~~LnGr~~~~k~~~v~~ 742 (943)
|..+|++||+|+.|.+.++. .+++||+|.+.++|..|++.|||..|+++.+.|..
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~ 55 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSY 55 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 56889999999999998865 57899999999999999999999999999988865
No 93
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.80 E-value=7.3e-09 Score=107.18 Aligned_cols=76 Identities=17% Similarity=0.275 Sum_probs=67.8
Q ss_pred EEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEccc
Q 002280 551 VAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 627 (943)
Q Consensus 551 ~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~ 627 (943)
.+||||||++.+..+.|+..|++||.|....|+.| ++.++||+||+|.+.++|.+|++.-| -.|+||+..|..|.-
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Ccccccccccchhhh
Confidence 39999999999999999999999999999999888 56789999999999999999998654 568899888877644
No 94
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=98.80 E-value=1.6e-08 Score=108.64 Aligned_cols=79 Identities=23% Similarity=0.353 Sum_probs=66.7
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeee--ecCCCeeeEEeCCHHHHHHHHH-ccCCcc
Q 002280 459 SNRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVI--QREKGQAFVEFLTAEDASAALC-CDGCSF 535 (943)
Q Consensus 459 ~~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~--~~skGyAFVeF~s~edA~~Al~-LnG~~l 535 (943)
.....++|+|.|||+..-+-||+.+|.+||.+..+ .+.+ -.||||+||+|.++++|++|-+ |+|..+
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldV----------EIIfNERGSKGFGFVTmen~~dadRARa~LHgt~V 161 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDV----------EIIFNERGSKGFGFVTMENPADADRARAELHGTVV 161 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhhCceeeE----------EEEeccCCCCccceEEecChhhHHHHHHHhhccee
Confidence 34567899999999999999999999999954332 2222 2489999999999999999999 999999
Q ss_pred ccccccccCCcc
Q 002280 536 SGSILKIKRPKE 547 (943)
Q Consensus 536 ~Gr~LkV~rp~d 547 (943)
.||+|.|+..+.
T Consensus 162 EGRkIEVn~ATa 173 (376)
T KOG0125|consen 162 EGRKIEVNNATA 173 (376)
T ss_pred eceEEEEeccch
Confidence 999999996553
No 95
>smart00362 RRM_2 RNA recognition motif.
Probab=98.79 E-value=1.7e-08 Score=85.36 Aligned_cols=71 Identities=34% Similarity=0.476 Sum_probs=57.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcccccccccc
Q 002280 465 RLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSILKIK 543 (943)
Q Consensus 465 tLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~LkV~ 543 (943)
+|||+|||..+++++|+++|.+||.+..+. +.... +.++|+|||+|.+.++|..|+. ++|..+.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~-------~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVK-------IPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEE-------EecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 589999999999999999999988432210 11111 4567999999999999999999 99999999988763
No 96
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=98.79 E-value=7.6e-09 Score=102.50 Aligned_cols=70 Identities=27% Similarity=0.386 Sum_probs=61.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeee-cCCCeeeEEeCCHHHHHHHHH-ccCCccccccc
Q 002280 463 MRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQ-REKGQAFVEFLTAEDASAALC-CDGCSFSGSIL 540 (943)
Q Consensus 463 ~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~-~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~L 540 (943)
.++||||||+..+|+.+|..+|..|| ++..+++. ...|||||||.++-+|+.|+. |||..|.|..|
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG------------~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~ 77 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYG------------PLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRI 77 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcC------------cceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccCceE
Confidence 57999999999999999999999988 45555554 457899999999999999999 99999999999
Q ss_pred cccC
Q 002280 541 KIKR 544 (943)
Q Consensus 541 kV~r 544 (943)
+|..
T Consensus 78 rVE~ 81 (195)
T KOG0107|consen 78 RVEL 81 (195)
T ss_pred EEEe
Confidence 8873
No 97
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.77 E-value=2.5e-08 Score=82.53 Aligned_cols=56 Identities=27% Similarity=0.396 Sum_probs=50.6
Q ss_pred HHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEc
Q 002280 567 VMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQA 625 (943)
Q Consensus 567 L~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A 625 (943)
|.++|++||.|..+.+.... +++|||+|.+.++|..|+..|||..|.|++|.|.+|
T Consensus 1 L~~~f~~fG~V~~i~~~~~~---~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK---RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS---TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999987653 699999999999999999999999999999999875
No 98
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.77 E-value=4.2e-08 Score=83.44 Aligned_cols=72 Identities=25% Similarity=0.517 Sum_probs=66.0
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCC-CCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEE
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNED-HEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAV 623 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~-~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~ 623 (943)
+|+|+|||..+++++|.++|+.||.|..+.+..+.. ...|+|||+|.+.++|..|+..+++..+.|+.|.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence 489999999999999999999999999999887633 458999999999999999999999999999999885
No 99
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.76 E-value=7.9e-09 Score=106.90 Aligned_cols=75 Identities=20% Similarity=0.216 Sum_probs=62.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHHccCCccccccccc
Q 002280 463 MRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSILKI 542 (943)
Q Consensus 463 ~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~LnG~~l~Gr~LkV 542 (943)
-.+||||||+|.++.+.|+.+|++||.+... ..|-+..+++|+||+||+|.+.+.|++|++--.-.|.||+..|
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~ea------vvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piIdGR~aNc 85 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEA------VVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPIIDGRKANC 85 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEE------EEEeccCCccccceeeEEeecHHHHHHHhcCCCCccccccccc
Confidence 3589999999999999999999999975432 2556778999999999999999999999995556777776544
Q ss_pred c
Q 002280 543 K 543 (943)
Q Consensus 543 ~ 543 (943)
.
T Consensus 86 n 86 (247)
T KOG0149|consen 86 N 86 (247)
T ss_pred c
Confidence 3
No 100
>PLN03213 repressor of silencing 3; Provisional
Probab=98.75 E-value=9.1e-09 Score=114.74 Aligned_cols=75 Identities=19% Similarity=0.363 Sum_probs=63.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCH--HHHHHHHH-ccCCccccc
Q 002280 462 PMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTA--EDASAALC-CDGCSFSGS 538 (943)
Q Consensus 462 ~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~--edA~~Al~-LnG~~l~Gr 538 (943)
...+||||||++.+|+++|..+|..||.+..+. |+ ..+| +|||||+|.+. .++.+||. |||..+.|+
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVE-------Ip-RETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR 78 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVE-------FV-RTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGG 78 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEE-------Ee-cccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCc
Confidence 356999999999999999999999999754432 12 2344 99999999987 78999999 999999999
Q ss_pred cccccCCc
Q 002280 539 ILKIKRPK 546 (943)
Q Consensus 539 ~LkV~rp~ 546 (943)
.|+|..++
T Consensus 79 ~LKVNKAK 86 (759)
T PLN03213 79 RLRLEKAK 86 (759)
T ss_pred eeEEeecc
Confidence 99999554
No 101
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.69 E-value=2.4e-09 Score=109.07 Aligned_cols=139 Identities=19% Similarity=0.260 Sum_probs=113.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeee-----ecCCCeeeEEeCCHHHHHHHHH-ccCC
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVI-----QREKGQAFVEFLTAEDASAALC-CDGC 533 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~-----~~skGyAFVeF~s~edA~~Al~-LnG~ 533 (943)
....+||||+||-..++|+-|-++|-+.| ||+.+.+ +..+ ||||.|.+.-.+..|++ +||.
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaG------------PV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~ 72 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAG------------PVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGD 72 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccC------------ceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccc
Confidence 34578999999999999999999997766 4444433 3334 99999999999999999 9999
Q ss_pred ccccccccccCCccceeEEEEEec----CCCCCCHHHHHHHHhhcCCeeEEEEEecC-CCCCCEEEEeecChhHHHHHHH
Q 002280 534 SFSGSILKIKRPKEFVEVAIFIGG----ISRTLSSKMVMEIVCAFGPLKAYHFEVNE-DHEEPCAFIEYVDQLVTPKAIA 608 (943)
Q Consensus 534 ~l~Gr~LkV~rp~d~~~~~LfV~N----Lp~~~teedL~e~Fs~fG~I~~v~l~~d~-~~skG~aFVeF~~~e~A~kAl~ 608 (943)
.+.+.+++| +++.|+ |...++++.+...|+.-|++..+++..+. +.++.++|+.+...-....|+.
T Consensus 73 ~l~~~e~q~---------~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~ 143 (267)
T KOG4454|consen 73 DLEEDEEQR---------TLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALD 143 (267)
T ss_pred hhccchhhc---------ccccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhh
Confidence 999999988 566666 77788999999999999999999987763 4678899999988777778887
Q ss_pred HhCCCccCCeEE
Q 002280 609 GLNGLKVGGQVL 620 (943)
Q Consensus 609 ~LnG~~~~gr~L 620 (943)
...+..+.-+++
T Consensus 144 ~y~~l~~~~~~~ 155 (267)
T KOG4454|consen 144 LYQGLELFQKKV 155 (267)
T ss_pred hhcccCcCCCCc
Confidence 777765543333
No 102
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=2.1e-08 Score=104.16 Aligned_cols=79 Identities=25% Similarity=0.305 Sum_probs=68.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccccccc
Q 002280 462 PMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSIL 540 (943)
Q Consensus 462 ~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~L 540 (943)
...+|-|.||+.+++|++|.+||-+||.+.. ..++++..||.++|||||.|.+.++|.+||. |||.-+..--|
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~r------vylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LIL 261 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITR------VYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLIL 261 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccce------eEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEE
Confidence 5678999999999999999999999886433 2366888999999999999999999999999 99998887777
Q ss_pred cccCCc
Q 002280 541 KIKRPK 546 (943)
Q Consensus 541 kV~rp~ 546 (943)
+|.+.+
T Consensus 262 rvEwsk 267 (270)
T KOG0122|consen 262 RVEWSK 267 (270)
T ss_pred EEEecC
Confidence 776543
No 103
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=1.7e-08 Score=102.76 Aligned_cols=81 Identities=16% Similarity=0.343 Sum_probs=76.1
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDG 629 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~ 629 (943)
+||||+|...+++.-|...|=+||.|..|.++.| .+..+||+||+|.-.++|..||..||+..+.|++|+|.+|.|..
T Consensus 12 tlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP~k 91 (298)
T KOG0111|consen 12 TLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKPEK 91 (298)
T ss_pred eEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCCcc
Confidence 9999999999999999999999999999999888 56789999999999999999999999999999999999998876
Q ss_pred CcC
Q 002280 630 SIM 632 (943)
Q Consensus 630 ~~~ 632 (943)
...
T Consensus 92 ike 94 (298)
T KOG0111|consen 92 IKE 94 (298)
T ss_pred ccC
Confidence 543
No 104
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.67 E-value=3.9e-08 Score=112.96 Aligned_cols=76 Identities=24% Similarity=0.439 Sum_probs=72.2
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEccc
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 627 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~ 627 (943)
.|||||+|+.+++++|.++|+..|.|.+++++.| +|..+||||++|.+.++|..|+..|||..+.|++|+|.|+..
T Consensus 20 ~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 20 SVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASN 97 (435)
T ss_pred ceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccc
Confidence 8999999999999999999999999999999988 567799999999999999999999999999999999998754
No 105
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.64 E-value=4.5e-08 Score=104.17 Aligned_cols=78 Identities=24% Similarity=0.327 Sum_probs=70.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccccc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr 538 (943)
..+-+||||+-|++.++|..|+..|+.||.+.. | .+|.+..+|.++|||||+|.+.-+...|.. .+|++|.|+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~Ikr---i---rlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgr 171 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKR---I---RLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGR 171 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCccee---E---EEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCc
Confidence 367899999999999999999999999997443 3 367888999999999999999999999999 999999999
Q ss_pred ccccc
Q 002280 539 ILKIK 543 (943)
Q Consensus 539 ~LkV~ 543 (943)
.|.|-
T Consensus 172 ri~VD 176 (335)
T KOG0113|consen 172 RILVD 176 (335)
T ss_pred EEEEE
Confidence 98775
No 106
>smart00361 RRM_1 RNA recognition motif.
Probab=98.63 E-value=9.1e-08 Score=83.15 Aligned_cols=59 Identities=19% Similarity=0.312 Sum_probs=51.4
Q ss_pred HHHHHHHHh----hcCCeeEEE-EEec--C--CCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEE
Q 002280 564 SKMVMEIVC----AFGPLKAYH-FEVN--E--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTA 622 (943)
Q Consensus 564 eedL~e~Fs----~fG~I~~v~-l~~d--~--~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V 622 (943)
+++|+++|+ +||.|..|. |+.+ + +.++|+|||+|.+.++|.+|+..|||..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 567788887 999999985 5554 3 567999999999999999999999999999999986
No 107
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.59 E-value=4.7e-08 Score=112.30 Aligned_cols=79 Identities=23% Similarity=0.331 Sum_probs=70.6
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccccccccc
Q 002280 464 RRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSILKI 542 (943)
Q Consensus 464 rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~LkV 542 (943)
+.|||||||+.+++++|..+|+..|.+..+ ..+.+..+|..+|||||+|.+.++|..|+. |||..+.|++|+|
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~------~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v 92 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSF------RLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRV 92 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCcccee------eecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEe
Confidence 789999999999999999999887764443 466788899999999999999999999999 9999999999999
Q ss_pred cCCccc
Q 002280 543 KRPKEF 548 (943)
Q Consensus 543 ~rp~d~ 548 (943)
.++...
T Consensus 93 ~~~~~~ 98 (435)
T KOG0108|consen 93 NYASNR 98 (435)
T ss_pred eccccc
Confidence 877643
No 108
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.58 E-value=1.1e-07 Score=86.64 Aligned_cols=73 Identities=21% Similarity=0.270 Sum_probs=62.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeee---cCCCeeeEEeCCHHHHHHHHH-ccCCcccc
Q 002280 462 PMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQ---REKGQAFVEFLTAEDASAALC-CDGCSFSG 537 (943)
Q Consensus 462 ~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~---~skGyAFVeF~s~edA~~Al~-LnG~~l~G 537 (943)
-++-|||.|||+.+|.+++.++|..||. |..+.+| .-+|.|||.|.+..+|.+|+. |+|..+.+
T Consensus 17 vnriLyirNLp~~ITseemydlFGkyg~------------IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ 84 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMYDLFGKYGT------------IRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDN 84 (124)
T ss_pred hheeEEEecCCccccHHHHHHHhhcccc------------eEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCC
Confidence 3678999999999999999999998884 4445444 357899999999999999999 99999999
Q ss_pred ccccccCCc
Q 002280 538 SILKIKRPK 546 (943)
Q Consensus 538 r~LkV~rp~ 546 (943)
+.|.|..+.
T Consensus 85 ryl~vlyyq 93 (124)
T KOG0114|consen 85 RYLVVLYYQ 93 (124)
T ss_pred ceEEEEecC
Confidence 999876443
No 109
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=3e-07 Score=104.55 Aligned_cols=146 Identities=20% Similarity=0.263 Sum_probs=104.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCC---eeeEEeCCHHHHHHHHH---ccC-
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKG---QAFVEFLTAEDASAALC---CDG- 532 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skG---yAFVeF~s~edA~~Al~---LnG- 532 (943)
..-+++||||+||+.++|++|...|-.||.. +..++. .......-..+| |+|+.|.+...+..-|. ...
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~--~VdWP~--k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~ 331 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSV--KVDWPG--KANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEG 331 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccce--EeecCC--CccccccCCCCCcccEEEEEecchHHHHHHHHHHhhccc
Confidence 3457899999999999999999999999853 122321 111112223455 99999999998887665 221
Q ss_pred -Ccc-------ccccccccCCc----ccee---------EEEEEecCCCCCCHHHHHHHHh-hcCCeeEEEEEecCCC--
Q 002280 533 -CSF-------SGSILKIKRPK----EFVE---------VAIFIGGISRTLSSKMVMEIVC-AFGPLKAYHFEVNEDH-- 588 (943)
Q Consensus 533 -~~l-------~Gr~LkV~rp~----d~~~---------~~LfV~NLp~~~teedL~e~Fs-~fG~I~~v~l~~d~~~-- 588 (943)
..| ..+.+.|..+. +|.. .|||||+||..++.++|..+|. -||.|..+-|..|...
T Consensus 332 ~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KY 411 (520)
T KOG0129|consen 332 NYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKY 411 (520)
T ss_pred ceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCC
Confidence 111 22334444221 1111 1999999999999999999999 6999999988777443
Q ss_pred CCCEEEEeecChhHHHHHHHH
Q 002280 589 EEPCAFIEYVDQLVTPKAIAG 609 (943)
Q Consensus 589 skG~aFVeF~~~e~A~kAl~~ 609 (943)
-+|-|-|+|.+..+-.+||.+
T Consensus 412 PkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 412 PKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CCCcceeeecccHHHHHHHhh
Confidence 489999999999999999864
No 110
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.55 E-value=9.6e-08 Score=104.18 Aligned_cols=159 Identities=18% Similarity=0.234 Sum_probs=116.8
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHHccCCccccccccccC
Q 002280 465 RLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSILKIKR 544 (943)
Q Consensus 465 tLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~LnG~~l~Gr~LkV~r 544 (943)
.|-+.+||+++|+.++.+||.+--.+.+ ...+ .+.+..-.|+-.|-|||.|...++|+.||.-+...|+-+-|.+.|
T Consensus 163 ivRmRGLPfdat~~dVv~FF~~~cpv~~--g~eg-vLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFR 239 (508)
T KOG1365|consen 163 IVRMRGLPFDATALDVVEFFGPPCPVTG--GTEG-VLFVTRPDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFR 239 (508)
T ss_pred EEEecCCCCCcchHHHHHhcCCCCcccC--Cccc-eEEEECCCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 5778999999999999999953221111 0111 123333347788999999999999999998666666666555543
Q ss_pred Ccc------------------------------ce-----eEEEEEecCCCCCCHHHHHHHHhhcCCe-eE--EEEEec-
Q 002280 545 PKE------------------------------FV-----EVAIFIGGISRTLSSKMVMEIVCAFGPL-KA--YHFEVN- 585 (943)
Q Consensus 545 p~d------------------------------~~-----~~~LfV~NLp~~~teedL~e~Fs~fG~I-~~--v~l~~d- 585 (943)
.+. .. ..+|-+.+||+..+.++|.++|..|..- .. |.++.+
T Consensus 240 STaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~ 319 (508)
T KOG1365|consen 240 STAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG 319 (508)
T ss_pred HhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC
Confidence 220 00 0189999999999999999999998643 22 566555
Q ss_pred CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcc
Q 002280 586 EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAV 626 (943)
Q Consensus 586 ~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~ 626 (943)
.+.-.|-|||+|.+.+.|..|...-+...+..+-|.|-.+.
T Consensus 320 qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S 360 (508)
T KOG1365|consen 320 QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCS 360 (508)
T ss_pred CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeecc
Confidence 45568999999999999999999888887788999887653
No 111
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.55 E-value=1.3e-07 Score=80.40 Aligned_cols=72 Identities=35% Similarity=0.456 Sum_probs=56.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcccccccccc
Q 002280 465 RLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSILKIK 543 (943)
Q Consensus 465 tLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~LkV~ 543 (943)
+|+|+|||+.+++++|+++|..+|.+..+ .+.....+...|+|||+|.+.++|..|+. +++..+.|+.|.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~-------~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESV-------RIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEE-------EEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEe
Confidence 58999999999999999999998743221 11111112457999999999999999999 99999999998774
No 112
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.55 E-value=5.4e-08 Score=116.01 Aligned_cols=163 Identities=20% Similarity=0.258 Sum_probs=130.4
Q ss_pred cccccCCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCC
Q 002280 455 QLTQSNRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGC 533 (943)
Q Consensus 455 ~~~~~~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~ 533 (943)
+.......+++||+|||+..+++.+|+..|..+|.+-.| .|..-.++...-||||.|.+...|-.|+. +.+.
T Consensus 364 ~~~DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~V-------DiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~ 436 (975)
T KOG0112|consen 364 LKLDDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEV-------DIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGP 436 (975)
T ss_pred ccccchhhhhhhhhcCcccchhhhhhhhhhhhhcccccc-------ccccCCCCcccchhhhhhhccccCcccchhhcCC
Confidence 334456678999999999999999999999998863321 22233356777899999999999999988 8887
Q ss_pred cccccc--ccccCCccceeEEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhC
Q 002280 534 SFSGSI--LKIKRPKEFVEVAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLN 611 (943)
Q Consensus 534 ~l~Gr~--LkV~rp~d~~~~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~Ln 611 (943)
.|..-. +.+..++......+++++|+..+....|..+|..||+|..|.+. .+..|+||.|.+...++.|+..|-
T Consensus 437 ~I~~g~~r~glG~~kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~----hgq~yayi~yes~~~aq~a~~~~r 512 (975)
T KOG0112|consen 437 LIGNGTHRIGLGQPKSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR----HGQPYAYIQYESPPAAQAATHDMR 512 (975)
T ss_pred ccccCcccccccccccccceeeccCCCCCCChHHHHHHHhhccCcceeeecc----cCCcceeeecccCccchhhHHHHh
Confidence 664434 44444454445599999999999999999999999999988753 356799999999999999999999
Q ss_pred CCccCC--eEEEEEEcccC
Q 002280 612 GLKVGG--QVLTAVQAVLD 628 (943)
Q Consensus 612 G~~~~g--r~L~V~~A~~~ 628 (943)
|..|+| +.|.|.+|.+.
T Consensus 513 gap~G~P~~r~rvdla~~~ 531 (975)
T KOG0112|consen 513 GAPLGGPPRRLRVDLASPP 531 (975)
T ss_pred cCcCCCCCcccccccccCC
Confidence 999976 56888877543
No 113
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.50 E-value=3e-07 Score=87.48 Aligned_cols=87 Identities=10% Similarity=0.067 Sum_probs=75.2
Q ss_pred CCCceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhcCCCCeEEEEEecC-CCCCcceeEEEEeCCHHHHHHHHHHhCC
Q 002280 652 KKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKY-GDSNISTIQACEGNENTASAGVGQNLTN 730 (943)
Q Consensus 652 ~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskFG~V~~V~I~r~-~~g~~~G~~FVeF~~~e~A~~Ai~~LnG 730 (943)
.....+|++.++....+ .+||...|.-||+|++|.+--+ -+|+++||+.|+|++.++|++|+.+|||
T Consensus 69 SVEGwIi~VtgvHeEat------------Eedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng 136 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEAT------------EEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNG 136 (170)
T ss_pred ceeeEEEEEeccCcchh------------HHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccc
Confidence 34578999999875444 3799999999999999998766 6899999999999999999999999999
Q ss_pred CccCCCceEEEEeccccccc
Q 002280 731 DETNEKGERLEEVTDHKSIK 750 (943)
Q Consensus 731 r~~~~k~~~v~~~~~~~~~~ 750 (943)
..+-+.++.|.+.....+..
T Consensus 137 ~~ll~q~v~VDw~Fv~gp~~ 156 (170)
T KOG0130|consen 137 AELLGQNVSVDWCFVKGPER 156 (170)
T ss_pred hhhhCCceeEEEEEecCCcc
Confidence 99999999999988654433
No 114
>smart00360 RRM RNA recognition motif.
Probab=98.48 E-value=3.5e-07 Score=76.88 Aligned_cols=70 Identities=37% Similarity=0.463 Sum_probs=55.5
Q ss_pred EcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcccccccccc
Q 002280 468 VENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSILKIK 543 (943)
Q Consensus 468 VgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~LkV~ 543 (943)
|+|||..+++++|+++|.+||.+..+. ......++.++|||||+|.+.++|..|+. |++..+.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~------i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVR------LVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEE------EEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 689999999999999999988532211 11111245668999999999999999999 99999999988763
No 115
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=9.9e-08 Score=97.28 Aligned_cols=81 Identities=27% Similarity=0.321 Sum_probs=68.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccccc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr 538 (943)
.-..++||||+|...+||.-|...|-+||.+.. |. .-++-..++.+|||||+|.-.|+|.+||. ||+.+|.|+
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~d---Iq---iPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~Gr 80 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKD---IQ---IPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGR 80 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhh---cc---cccchhcccccceeEEEeeccchhHHHhhcCchhhhcce
Confidence 345789999999999999999999999886332 22 22556678899999999999999999999 999999999
Q ss_pred cccccCCc
Q 002280 539 ILKIKRPK 546 (943)
Q Consensus 539 ~LkV~rp~ 546 (943)
.|+|..++
T Consensus 81 tirVN~Ak 88 (298)
T KOG0111|consen 81 TIRVNLAK 88 (298)
T ss_pred eEEEeecC
Confidence 99998544
No 116
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.45 E-value=2e-07 Score=94.60 Aligned_cols=76 Identities=28% Similarity=0.349 Sum_probs=66.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcccccccc
Q 002280 463 MRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSILK 541 (943)
Q Consensus 463 ~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~Lk 541 (943)
...|.|-||.+-+|.++|+-+|+.||.+.. |- +-.+..|..++|||||-|....+|+.||+ |+|.+|.|+.|.
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgD---Vy---IPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelr 86 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGD---VY---IPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELR 86 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccc---ee---cccccccccccceeEEEeeecchHHHHHHhhcceeeccceee
Confidence 457999999999999999999999996322 21 22566789999999999999999999999 999999999998
Q ss_pred ccC
Q 002280 542 IKR 544 (943)
Q Consensus 542 V~r 544 (943)
|+-
T Consensus 87 Vq~ 89 (256)
T KOG4207|consen 87 VQM 89 (256)
T ss_pred ehh
Confidence 873
No 117
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.38 E-value=8.6e-07 Score=92.70 Aligned_cols=119 Identities=13% Similarity=0.213 Sum_probs=98.8
Q ss_pred eeecCCCeeeEEeCCHHHHHHHHH-ccCCccccccccccCCccceeE----------EEEEecCCCCCCHHHHHHHHhhc
Q 002280 506 VIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSILKIKRPKEFVEV----------AIFIGGISRTLSSKMVMEIVCAF 574 (943)
Q Consensus 506 ~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~LkV~rp~d~~~~----------~LfV~NLp~~~teedL~e~Fs~f 574 (943)
.-+.-.++||+.|.....-..+-. -++..+.-.++++.....|..+ +||+|.|...++++-|...|.+|
T Consensus 135 ~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kf 214 (290)
T KOG0226|consen 135 RPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKF 214 (290)
T ss_pred CCCccCcccccCcchhhhhhhhccccccccccCcceeeccccccCCcccccCccccceeecccccccccHHHHHHHHHhc
Confidence 334557899999998877777766 5666666666777765544332 99999999999999999999999
Q ss_pred CCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEE
Q 002280 575 GPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQ 624 (943)
Q Consensus 575 G~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~ 624 (943)
-.....+++++ ++.++||+||-|.++.++..|+..|+|..++.++|.++.
T Consensus 215 psf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 215 PSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred cchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 88777788888 678899999999999999999999999999999998863
No 118
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.34 E-value=3e-06 Score=98.56 Aligned_cols=156 Identities=9% Similarity=0.062 Sum_probs=119.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHHccCCcccccccc
Q 002280 462 PMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSILK 541 (943)
Q Consensus 462 ~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~LnG~~l~Gr~Lk 541 (943)
....+-+.+.+++..+.++++||.- . .++...+.++.......|-++|+|....++..|++-|.+.+-.+.+.
T Consensus 310 d~~y~~~~gm~fn~~~nd~rkfF~g------~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q 382 (944)
T KOG4307|consen 310 DKYYNNYKGMEFNNDFNDGRKFFPG------R-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQ 382 (944)
T ss_pred hhheeeecccccccccchhhhhcCc------c-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhccee
Confidence 3455667899999999999999932 2 12221122333333447899999999999999999888888888888
Q ss_pred ccCCccce--eE-----------------------------------------EEEEecCCCCCCHHHHHHHHhhcCCee
Q 002280 542 IKRPKEFV--EV-----------------------------------------AIFIGGISRTLSSKMVMEIVCAFGPLK 578 (943)
Q Consensus 542 V~rp~d~~--~~-----------------------------------------~LfV~NLp~~~teedL~e~Fs~fG~I~ 578 (943)
|..+.+.. .. +|||..||..+++.++.++|...-.|+
T Consensus 383 ~~P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ve 462 (944)
T KOG4307|consen 383 TGPPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVE 462 (944)
T ss_pred ecCCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhh
Confidence 87544211 00 999999999999999999999877776
Q ss_pred E-EEEEec-CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEE
Q 002280 579 A-YHFEVN-EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQ 624 (943)
Q Consensus 579 ~-v~l~~d-~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~ 624 (943)
+ |.|.+. ++..++.|||.|..++.+..|+..-+.+.++.+.|.|..
T Consensus 463 d~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~s 510 (944)
T KOG4307|consen 463 DFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDS 510 (944)
T ss_pred heeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeec
Confidence 6 655444 566789999999999999999887787888889999874
No 119
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.34 E-value=5.1e-07 Score=95.66 Aligned_cols=83 Identities=20% Similarity=0.251 Sum_probs=68.6
Q ss_pred CCCCceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCC--cceeEEEEeCCHHHHHHHHHHh
Q 002280 651 LKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYGDSN--ISTIQACEGNENTASAGVGQNL 728 (943)
Q Consensus 651 ~~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskFG~V~~V~I~r~~~g~--~~G~~FVeF~~~e~A~~Ai~~L 728 (943)
...|++||.|.|+|...+. + +++.+.++++|++||+|..|.|...+... -.--+||+|...++|.+|+--|
T Consensus 277 l~~ptkvlllrnmVg~gev---d----~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~Vdl 349 (378)
T KOG1996|consen 277 LKCPTKVLLLRNMVGAGEV---D----EELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDL 349 (378)
T ss_pred HhcchHHHHhhhhcCcccc---c----HHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhc
Confidence 4678999999999998886 2 45567899999999999999998753221 1124799999999999999999
Q ss_pred CCCccCCCceEE
Q 002280 729 TNDETNEKGERL 740 (943)
Q Consensus 729 nGr~~~~k~~~v 740 (943)
||+.|++++...
T Consensus 350 nGRyFGGr~v~A 361 (378)
T KOG1996|consen 350 NGRYFGGRVVSA 361 (378)
T ss_pred CCceecceeeeh
Confidence 999999998764
No 120
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.33 E-value=5.6e-08 Score=115.56 Aligned_cols=147 Identities=20% Similarity=0.232 Sum_probs=121.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHHccCCccccccc
Q 002280 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSIL 540 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~LnG~~l~Gr~L 540 (943)
+...++||.||++.+.+.+|...|..++. +..+. .++.+..++-+|+||++|..++.+.+|+.++...+.|+.
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~---~e~vq---i~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~- 737 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGT---IEVVQ---IVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKI- 737 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccch---hhhHH---HHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhhh-
Confidence 55678999999999999999999988774 22222 223455677899999999999999999997777776633
Q ss_pred cccCCccceeEEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec-CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeE
Q 002280 541 KIKRPKEFVEVAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN-EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQV 619 (943)
Q Consensus 541 kV~rp~d~~~~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d-~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~ 619 (943)
.|+|.|+|+..|.+.++.+|.++|.+.++.++.. .+..+|.|||.|.+..++..++...++..+.-+.
T Consensus 738 -----------~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~ 806 (881)
T KOG0128|consen 738 -----------SVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENN 806 (881)
T ss_pred -----------hhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcC
Confidence 7899999999999999999999999999887666 3567999999999999999999888887776666
Q ss_pred EEEEEc
Q 002280 620 LTAVQA 625 (943)
Q Consensus 620 L~V~~A 625 (943)
+.|...
T Consensus 807 ~~v~vs 812 (881)
T KOG0128|consen 807 GEVQVS 812 (881)
T ss_pred cccccc
Confidence 666543
No 121
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.23 E-value=5.7e-06 Score=96.32 Aligned_cols=180 Identities=9% Similarity=-0.067 Sum_probs=116.9
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDG 629 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~ 629 (943)
.+-+.++++.....|++++|.-. .|.++.|..+ .....|.++|+|....++++|++ -|...+-.+.+.+..+....
T Consensus 313 y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~-rn~~~~~~R~~q~~P~g~~~ 390 (944)
T KOG4307|consen 313 YNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFT-RNPSDDVNRPFQTGPPGNLG 390 (944)
T ss_pred eeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHh-cCchhhhhcceeecCCCccc
Confidence 34457888889999999998652 2333444333 23348999999999999999986 45556667777775432211
Q ss_pred CcC--------C---CCCCC-CCCCC------CCCcCCCCCCCceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhcCC
Q 002280 630 SIM--------D---NSGNP-PFHGI------PKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARF 691 (943)
Q Consensus 630 ~~~--------~---~~~~~-~~~~i------p~~~~~~~~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskF 691 (943)
-.. . ...+. +-... +....+.....+.||+|..|....++ .++-..|.+-
T Consensus 391 ~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~------------~~~v~~f~~~ 458 (944)
T KOG4307|consen 391 RNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPI------------VPPVNKFMGA 458 (944)
T ss_pred cccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccc------------cchhhhhhhh
Confidence 100 0 00000 00000 11112234556889999998665444 3566667766
Q ss_pred CCeEE-EEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCceEEEEecc
Q 002280 692 GSVKS-VNVVKYGDSNISTIQACEGNENTASAGVGQNLTNDETNEKGERLEEVTD 745 (943)
Q Consensus 692 G~V~~-V~I~r~~~g~~~G~~FVeF~~~e~A~~Ai~~LnGr~~~~k~~~v~~~~~ 745 (943)
-.|+. |.|.+-+++...+.|||.|...+++..|.+--+-.-++-+.|.|....+
T Consensus 459 ~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~ 513 (944)
T KOG4307|consen 459 AAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIAD 513 (944)
T ss_pred hhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEEeechhh
Confidence 67777 7777778888889999999999999998887777777777777655543
No 122
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.18 E-value=3.4e-06 Score=99.54 Aligned_cols=75 Identities=24% Similarity=0.461 Sum_probs=70.4
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCCC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGS 630 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~~ 630 (943)
|||||+|+..+++.||..+|+.||.|.+|.++. ++|||||.+....+|.+|+.+|+...+.++.|+|.||.-...
T Consensus 423 TLwvG~i~k~v~e~dL~~~feefGeiqSi~li~----~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~ 497 (894)
T KOG0132|consen 423 TLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP----PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGP 497 (894)
T ss_pred eeeeccccchhhHHHHHHHHHhcccceeEeecc----CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCc
Confidence 999999999999999999999999999998865 599999999999999999999999999999999999966544
No 123
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.18 E-value=2.8e-07 Score=109.73 Aligned_cols=224 Identities=14% Similarity=0.099 Sum_probs=162.9
Q ss_pred CCeEEEcCCCCCCCHH-HHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHHccCCcccccccc
Q 002280 463 MRRLCVENLPLSASEK-ALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSILK 541 (943)
Q Consensus 463 ~rtLfVgNLP~~vTEe-dL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~LnG~~l~Gr~Lk 541 (943)
.+..++.|+.+..... ..+..|..++.+- .+.+. ..-.-.....++++++.....+..|....+-.+.++.+.
T Consensus 571 ~~e~~s~~v~p~~~~ke~~~~~~k~~~~ve---kv~~p---~~g~k~h~q~~~~~~~s~~~~~esat~pa~~~~a~~~~a 644 (881)
T KOG0128|consen 571 RREKESTNVYPEQQKKEIQRRQFKGEGNVE---KVNGP---KRGFKAHEQPQQQKVQSKHGSAESATVPAGGALANRSAA 644 (881)
T ss_pred hhhhcccCCCcchhhHHhhHHHhhcccccc---cccCc---cccccccccchhhhhhccccchhhcccccccccCCcccc
Confidence 4567788887776665 4556665555322 12111 000111223378999999999999999889888888887
Q ss_pred ccCCc--c------cee------EEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEE--ecCCCCCCEEEEeecChhHHHH
Q 002280 542 IKRPK--E------FVE------VAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFE--VNEDHEEPCAFIEYVDQLVTPK 605 (943)
Q Consensus 542 V~rp~--d------~~~------~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~--~d~~~skG~aFVeF~~~e~A~k 605 (943)
|.... . +.+ .++||.||+..+.+++|...|..+|.+..+++. .+.+.-+|+||++|..++.+.+
T Consensus 645 v~~ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~a 724 (881)
T KOG0128|consen 645 VGLADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGA 724 (881)
T ss_pred CCCCCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhh
Confidence 76321 1 000 189999999999999999999999998887664 3456678999999999999999
Q ss_pred HHHHhCCCccCCeEEEEEEcccCCCcCCCCCCCCCCCCCCCcCCCCCCCceEEEeccCCCcCCCCCCChHHHHHHHHHHH
Q 002280 606 AIAGLNGLKVGGQVLTAVQAVLDGSIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVR 685 (943)
Q Consensus 606 Al~~LnG~~~~gr~L~V~~A~~~~~~~~~~~~~~~~~ip~~~~~~~~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlr 685 (943)
|+....+..++...+. |.|.....+ .+.++
T Consensus 725 aV~f~d~~~~gK~~v~--------------------------------------i~g~pf~gt------------~e~~k 754 (881)
T KOG0128|consen 725 AVAFRDSCFFGKISVA--------------------------------------ISGPPFQGT------------KEELK 754 (881)
T ss_pred hhhhhhhhhhhhhhhh--------------------------------------eeCCCCCCc------------hHHHH
Confidence 9986666555522222 222222222 24578
Q ss_pred HHhcCCCCeEEEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCceEEEE
Q 002280 686 LECARFGSVKSVNVVKYGDSNISTIQACEGNENTASAGVGQNLTNDETNEKGERLEE 742 (943)
Q Consensus 686 e~fskFG~V~~V~I~r~~~g~~~G~~FVeF~~~e~A~~Ai~~LnGr~~~~k~~~v~~ 742 (943)
.+|.++|+|+++.++...+|.-+|.+||.|.+..+|..+...+.+.-++...+.+..
T Consensus 755 ~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~v 811 (881)
T KOG0128|consen 755 SLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQV 811 (881)
T ss_pred hhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccc
Confidence 999999999999999888999999999999999999999888888877776666533
No 124
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.17 E-value=4e-06 Score=85.73 Aligned_cols=77 Identities=14% Similarity=0.284 Sum_probs=69.8
Q ss_pred EEEEecCCCCCCHHHHHHHHhhc-CCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAF-GPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLD 628 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~f-G~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~ 628 (943)
.++|..+|..+.+..+..+|.+| |.|..+++.++ +|.++|||||+|++.+.|.-|...||++.|.++.|.|.+-.|.
T Consensus 51 ~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmppe 130 (214)
T KOG4208|consen 51 VVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMPPE 130 (214)
T ss_pred ceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeCch
Confidence 78899999999999999999998 78888888777 6888999999999999999999999999999999999876554
No 125
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.17 E-value=7.7e-07 Score=97.66 Aligned_cols=147 Identities=13% Similarity=0.078 Sum_probs=113.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHHccCCcccccccccc
Q 002280 464 RRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSILKIK 543 (943)
Q Consensus 464 rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~LnG~~l~Gr~LkV~ 543 (943)
..|.|.||.+++|.++++.||...|.+-.+...+ .+-++.+......|||.|.+...+..|..|.++.|-|+.|.|.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp---~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtntvfvdraliv~ 84 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYP---NVDDSKIPVISRTCYVKFLDSQSVTVAQHLTNTVFVDRALIVR 84 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccC---CCCCccCcceeeeEEEeccCCcceeHHhhhccceeeeeeEEEE
Confidence 3799999999999999999998888754443333 2344455556778999999999999999999988888887776
Q ss_pred CCccceeE------------------------------------------------------------EEEEecCCCCCC
Q 002280 544 RPKEFVEV------------------------------------------------------------AIFIGGISRTLS 563 (943)
Q Consensus 544 rp~d~~~~------------------------------------------------------------~LfV~NLp~~~t 563 (943)
...+...+ +++|++|+..+.
T Consensus 85 p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~ 164 (479)
T KOG4676|consen 85 PYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAI 164 (479)
T ss_pred ecCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhc
Confidence 21110000 799999999999
Q ss_pred HHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccC
Q 002280 564 SKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVG 616 (943)
Q Consensus 564 eedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~ 616 (943)
..++.++|..+|.|....+. .+....+|.|+|........|+. ++|+.+.
T Consensus 165 l~e~~e~f~r~Gev~ya~~a--sk~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 165 LPESGESFERKGEVSYAHTA--SKSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred chhhhhhhhhcchhhhhhhh--ccCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 99999999999998776542 23346688899999998888887 6777765
No 126
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=3e-06 Score=91.90 Aligned_cols=76 Identities=12% Similarity=0.193 Sum_probs=71.0
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEccc
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 627 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~ 627 (943)
.|||.-|.+.++.++|.-+|+.||+|.+|.|++| ++-+.-||||+|.+.+++++|.-.|++..|.++.|.|.++..
T Consensus 241 VLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQS 318 (479)
T KOG0415|consen 241 VLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQS 318 (479)
T ss_pred eEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhhh
Confidence 8999999999999999999999999999999999 455678999999999999999999999999999999987643
No 127
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.13 E-value=8.5e-06 Score=88.81 Aligned_cols=80 Identities=18% Similarity=0.362 Sum_probs=70.4
Q ss_pred CCccceeEEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHH-HhCCCccCCeEEEE
Q 002280 544 RPKEFVEVAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIA-GLNGLKVGGQVLTA 622 (943)
Q Consensus 544 rp~d~~~~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~-~LnG~~~~gr~L~V 622 (943)
.|.|..-.+|||++|-..+++.+|++.|.+||.|++|.++. .+++|||+|.+.++|+.|.. .+|...|.|+.|.|
T Consensus 222 pPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~----~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i 297 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILP----RKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKI 297 (377)
T ss_pred CCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeec----ccccceeeehhhHHHHHHHHhhcceeeecceEEEE
Confidence 45666666999999999999999999999999999998866 57899999999999998775 46777789999999
Q ss_pred EEccc
Q 002280 623 VQAVL 627 (943)
Q Consensus 623 ~~A~~ 627 (943)
.|..+
T Consensus 298 ~Wg~~ 302 (377)
T KOG0153|consen 298 KWGRP 302 (377)
T ss_pred EeCCC
Confidence 99877
No 128
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.08 E-value=2.7e-06 Score=93.74 Aligned_cols=160 Identities=18% Similarity=0.176 Sum_probs=122.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHHccCC-ccccccc
Q 002280 462 PMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGC-SFSGSIL 540 (943)
Q Consensus 462 ~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~LnG~-~l~Gr~L 540 (943)
...++|+|++...+.+..+..++..+|..... .....-....++||+++.|...+.+..||++.+. .+.+..+
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~------~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~ 160 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDA------RSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKG 160 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccc------hhhhhccccccccceeeccccHHHHHHHHHhhhccccccccc
Confidence 46789999999999999888888777642221 0112234467899999999999999999997774 4444333
Q ss_pred ccc-------CCcc-------ceeEEEE-EecCCCCCCHHHHHHHHhhcCCeeEEEEEecC--CCCCCEEEEeecChhHH
Q 002280 541 KIK-------RPKE-------FVEVAIF-IGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLVT 603 (943)
Q Consensus 541 kV~-------rp~d-------~~~~~Lf-V~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~--~~skG~aFVeF~~~e~A 603 (943)
..- ++.. ....++| |++|++.++.++|+..|..+|.|..+++..+. +..+|++||.|.....+
T Consensus 161 ~~dl~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~ 240 (285)
T KOG4210|consen 161 EKDLNTRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSK 240 (285)
T ss_pred cCcccccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhH
Confidence 221 1111 1112666 99999999999999999999999999987764 45689999999999999
Q ss_pred HHHHHHhCCCccCCeEEEEEEcccC
Q 002280 604 PKAIAGLNGLKVGGQVLTAVQAVLD 628 (943)
Q Consensus 604 ~kAl~~LnG~~~~gr~L~V~~A~~~ 628 (943)
..|+.. +...+.++++.+.+..+.
T Consensus 241 ~~~~~~-~~~~~~~~~~~~~~~~~~ 264 (285)
T KOG4210|consen 241 KLALND-QTRSIGGRPLRLEEDEPR 264 (285)
T ss_pred HHHhhc-ccCcccCcccccccCCCC
Confidence 999987 888999999999877554
No 129
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.07 E-value=1.5e-06 Score=89.07 Aligned_cols=149 Identities=13% Similarity=0.077 Sum_probs=116.8
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCCCc
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGSI 631 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~~~ 631 (943)
+|||+||...++++-|.++|-+.|+|..|.|..+.+....||||.|.+..++.-|++.|||..+.+..|.+..-.-+..
T Consensus 11 tl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G~sh- 89 (267)
T KOG4454|consen 11 TLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCGNSH- 89 (267)
T ss_pred HHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhcccccCCCc-
Confidence 8999999999999999999999999999999887666656999999999999999999999999999888763211000
Q ss_pred CCCCCCCCCCCCCCCcCCCCCCCceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCcceeE
Q 002280 632 MDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYGDSNISTIQ 711 (943)
Q Consensus 632 ~~~~~~~~~~~ip~~~~~~~~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskFG~V~~V~I~r~~~g~~~G~~ 711 (943)
+.| +..--.+ .+.+.|+.-|.+.-+.++.+..|....++
T Consensus 90 -----------------------------------apl---d~r~~~e---i~~~v~s~a~p~~~~R~~~~~d~rnrn~~ 128 (267)
T KOG4454|consen 90 -----------------------------------APL---DERVTEE---ILYEVFSQAGPIEGVRIPTDNDGRNRNFG 128 (267)
T ss_pred -----------------------------------chh---hhhcchh---hheeeecccCCCCCccccccccCCccCcc
Confidence 000 1111111 23456788899999999999888888889
Q ss_pred EEEeCCHHHHHHHHHHhCCCccCCCceEEEE
Q 002280 712 ACEGNENTASAGVGQNLTNDETNEKGERLEE 742 (943)
Q Consensus 712 FVeF~~~e~A~~Ai~~LnGr~~~~k~~~v~~ 742 (943)
|+.+-.....-.|...-.|.....+...+..
T Consensus 129 ~~~~qr~~~~P~~~~~y~~l~~~~~~~~~gg 159 (267)
T KOG4454|consen 129 FVTYQRLCAVPFALDLYQGLELFQKKVTIGG 159 (267)
T ss_pred chhhhhhhcCcHHhhhhcccCcCCCCccccc
Confidence 9998888777788888888777777666544
No 130
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.05 E-value=4.8e-07 Score=99.84 Aligned_cols=149 Identities=21% Similarity=0.268 Sum_probs=119.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccC-Ccccccccc
Q 002280 464 RRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDG-CSFSGSILK 541 (943)
Q Consensus 464 rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG-~~l~Gr~Lk 541 (943)
..||||||.+.++..+|..+|...- ++....+ -.-.|||||.+.+...|.+|++ ++| ..+.|+.+.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak-------~~~~g~f-----l~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e 69 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAK-------IPGSGQF-----LVKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQE 69 (584)
T ss_pred CcccccccCCCCChHHHHHHhcccc-------CCCCcce-----eeecceeeccCCchhhhhhhHHhhchhhhhcCceee
Confidence 4699999999999999999995531 1111111 1237899999999999999999 998 589999988
Q ss_pred ccC--CccceeEEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeE
Q 002280 542 IKR--PKEFVEVAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQV 619 (943)
Q Consensus 542 V~r--p~d~~~~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~ 619 (943)
|.. ++.....++.|.|+|+.+.++.|..++..||.+..|..+. ++...-..-|+|...+.+..||..|+|..|....
T Consensus 70 ~~~sv~kkqrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvn-t~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~ 148 (584)
T KOG2193|consen 70 VEHSVPKKQRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVN-TDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQH 148 (584)
T ss_pred ccchhhHHHHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhc-cchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhh
Confidence 864 3333334899999999999999999999999999987532 3334455668899999999999999999999999
Q ss_pred EEEEEc
Q 002280 620 LTAVQA 625 (943)
Q Consensus 620 L~V~~A 625 (943)
+.|.|-
T Consensus 149 ~k~~Yi 154 (584)
T KOG2193|consen 149 LKVGYI 154 (584)
T ss_pred hhcccC
Confidence 998764
No 131
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.04 E-value=3.4e-06 Score=86.20 Aligned_cols=76 Identities=21% Similarity=0.211 Sum_probs=62.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcccccccc
Q 002280 463 MRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSILK 541 (943)
Q Consensus 463 ~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~Lk 541 (943)
.--+||+.||..+.+.+|..+|.+|+. .+.-...-.+..||.|+|||||+|.+.+.|..|-+ ||+..|+|+-|.
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g-----~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~ 123 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGG-----TVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLE 123 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCC-----eeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheee
Confidence 346999999999999999999999852 11111122556789999999999999999999999 999999999887
Q ss_pred cc
Q 002280 542 IK 543 (943)
Q Consensus 542 V~ 543 (943)
|.
T Consensus 124 c~ 125 (214)
T KOG4208|consen 124 CH 125 (214)
T ss_pred eE
Confidence 65
No 132
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.00 E-value=1e-05 Score=92.14 Aligned_cols=81 Identities=15% Similarity=0.247 Sum_probs=69.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcccccc
Q 002280 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~ 539 (943)
.-.+.|||.+|...+-..+|+.||+.||.++|.. .|.+..+...+.|+||++.+.++|.+||. |+-..|.|+.
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAK------VVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrm 476 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAK------VVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRM 476 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceecee------eeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhccee
Confidence 4468999999999999999999999999988742 23333444567899999999999999999 9999999999
Q ss_pred ccccCCcc
Q 002280 540 LKIKRPKE 547 (943)
Q Consensus 540 LkV~rp~d 547 (943)
|.|.+.+.
T Consensus 477 ISVEkaKN 484 (940)
T KOG4661|consen 477 ISVEKAKN 484 (940)
T ss_pred eeeeeccc
Confidence 99997764
No 133
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.99 E-value=1.3e-05 Score=92.35 Aligned_cols=149 Identities=20% Similarity=0.200 Sum_probs=102.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccccc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr 538 (943)
.-..++|+|-|||..+++++|..+|..||.+.++.. +-...|.+||+|.+.-+|+.|+. |++..|.|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----------t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~ 140 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----------TPNKRGIVFVEFYDVRDAERALKALNRREIAGK 140 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----------ccccCceEEEEEeehHhHHHHHHHHHHHHhhhh
Confidence 345789999999999999999999999997655322 23458899999999999999999 999999999
Q ss_pred cccccCCc--------------------------cceeEEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCE
Q 002280 539 ILKIKRPK--------------------------EFVEVAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPC 592 (943)
Q Consensus 539 ~LkV~rp~--------------------------d~~~~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~ 592 (943)
.|+..... .|....+|+- |++..+..-+..+|+-+|.+.. +. ...-.-.
T Consensus 141 ~~k~~~~~~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~g~-l~P~~s~~~~~~~~~~~~~~~~-~~---~~~~~hq 215 (549)
T KOG4660|consen 141 RIKRPGGARRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLFGM-LSPTRSSILLEHISSVDGSSPG-RE---TPLLNHQ 215 (549)
T ss_pred hhcCCCcccccchhcccchhhhhccchhhcCCCCCCcCCcceee-eccchhhhhhhcchhccCcccc-cc---ccchhhh
Confidence 98832110 1111144443 8777777666667777777654 22 1111226
Q ss_pred EEEeecChhHHHHHHHHhCCCccCCeEEEEEEc
Q 002280 593 AFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQA 625 (943)
Q Consensus 593 aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A 625 (943)
-|++|.+..++..++..+ |..+.+........
T Consensus 216 ~~~~~~~~~s~a~~~~~~-G~~~s~~~~v~t~S 247 (549)
T KOG4660|consen 216 RFVEFADNRSYAFSEPRG-GFLISNSSGVITFS 247 (549)
T ss_pred hhhhhccccchhhcccCC-ceecCCCCceEEec
Confidence 678888888886555533 66666555444433
No 134
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.95 E-value=1.2e-05 Score=87.76 Aligned_cols=76 Identities=25% Similarity=0.276 Sum_probs=65.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH--ccCCcccc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC--CDGCSFSG 537 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~--LnG~~l~G 537 (943)
.....+||||+|-..++|.+|++.|.+|| .+..+.+-..+++|||+|.+.+.|+.|.+ +|...|.|
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyG------------eirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G 292 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYG------------EIRSIRILPRKGCAFVTFTTREAAEKAAEKSFNKLVING 292 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcC------------CeeeEEeecccccceeeehhhHHHHHHHHhhcceeeecc
Confidence 34567999999999999999999999988 44555666678899999999999999998 88889999
Q ss_pred ccccccCCcc
Q 002280 538 SILKIKRPKE 547 (943)
Q Consensus 538 r~LkV~rp~d 547 (943)
+.|+|.|...
T Consensus 293 ~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 293 FRLKIKWGRP 302 (377)
T ss_pred eEEEEEeCCC
Confidence 9999886544
No 135
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.92 E-value=9.1e-06 Score=97.53 Aligned_cols=157 Identities=14% Similarity=0.171 Sum_probs=120.2
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec-CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCCC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN-EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGS 630 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d-~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~~ 630 (943)
+||++||+..+++.+|+..|..||.|..|.|... .++.--|+||.|.+...+..|+..|.|..|+...+.+.+..+
T Consensus 374 TLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~~--- 450 (975)
T KOG0112|consen 374 TLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQP--- 450 (975)
T ss_pred hhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCccccccccc---
Confidence 9999999999999999999999999999988665 455667999999999999999999999888655554443221
Q ss_pred cCCCCCCCCCCCCCCCcCCCCCCCceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCccee
Q 002280 631 IMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYGDSNISTI 710 (943)
Q Consensus 631 ~~~~~~~~~~~~ip~~~~~~~~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskFG~V~~V~I~r~~~g~~~G~ 710 (943)
...+++-+++..+..-..+ ..+..+|..||.|..|.+-. | --|
T Consensus 451 --------------------kst~ttr~~sgglg~w~p~------------~~l~r~fd~fGpir~Idy~h---g--q~y 493 (975)
T KOG0112|consen 451 --------------------KSTPTTRLQSGGLGPWSPV------------SRLNREFDRFGPIRIIDYRH---G--QPY 493 (975)
T ss_pred --------------------ccccceeeccCCCCCCChH------------HHHHHHhhccCcceeeeccc---C--Ccc
Confidence 1234555566555321121 34678899999999877755 2 237
Q ss_pred EEEEeCCHHHHHHHHHHhCCCccCCCceEEEEeccccc
Q 002280 711 QACEGNENTASAGVGQNLTNDETNEKGERLEEVTDHKS 748 (943)
Q Consensus 711 ~FVeF~~~e~A~~Ai~~LnGr~~~~k~~~v~~~~~~~~ 748 (943)
+||.|.+...|+.|+..|-|..|++-...+...+....
T Consensus 494 ayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~~~ 531 (975)
T KOG0112|consen 494 AYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLASPP 531 (975)
T ss_pred eeeecccCccchhhHHHHhcCcCCCCCcccccccccCC
Confidence 89999999999999999999999977666555554433
No 136
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.91 E-value=2.6e-06 Score=89.68 Aligned_cols=43 Identities=26% Similarity=0.474 Sum_probs=40.6
Q ss_pred CceEEEEecCHHHHHHHHHHhhcCccCCceEEEEeechhhHHh
Q 002280 897 PGCVFVEYMRAEASCMAAHSLHRRLFDDRIVAVEYIPLNLYRA 939 (943)
Q Consensus 897 ~g~v~v~f~~~~~a~~a~~~l~gr~f~~~~v~~~y~~~~~y~~ 939 (943)
.|+|||+|...|+|++|++.||||||+|+.|++.+.|...|..
T Consensus 110 ~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~~re 152 (260)
T KOG2202|consen 110 VGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTDFRE 152 (260)
T ss_pred hhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCchhh
Confidence 6999999999999999999999999999999999999887753
No 137
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=97.84 E-value=3.1e-05 Score=88.27 Aligned_cols=75 Identities=15% Similarity=0.284 Sum_probs=69.3
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCC--CCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcc
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNED--HEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAV 626 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~--~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~ 626 (943)
.|+|.+|...+-..+|+.||++||.|.-.+|+.+.- ..+.|+||++.+.++|.+||..|+...|.|+.|.|..|.
T Consensus 407 NlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 407 NLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred ceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 899999999999999999999999999999988732 347899999999999999999999999999999999875
No 138
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.84 E-value=7e-06 Score=87.24 Aligned_cols=44 Identities=30% Similarity=0.486 Sum_probs=41.0
Q ss_pred CCceEEEEecCHHHHHHHHHHhhcCccCCceEEEEeechhhHHh
Q 002280 896 EPGCVFVEYMRAEASCMAAHSLHRRLFDDRIVAVEYIPLNLYRA 939 (943)
Q Consensus 896 ~~g~v~v~f~~~~~a~~a~~~l~gr~f~~~~v~~~y~~~~~y~~ 939 (943)
++--|||+|.+++.|.+|+--||||||+||+|.|.||.++.|.-
T Consensus 328 eavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~ekfs~ 371 (378)
T KOG1996|consen 328 EAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNLEKFSN 371 (378)
T ss_pred hhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccHHhhhh
Confidence 35679999999999999999999999999999999999999864
No 139
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.84 E-value=4.8e-05 Score=81.34 Aligned_cols=76 Identities=13% Similarity=0.192 Sum_probs=69.6
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec-CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEccc
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN-EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 627 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d-~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~ 627 (943)
+|+|.|||+.++++||+++|..||.+..+-|..+ .+.+.|+|-|.|...++|..|++.+||..+.|+.+.+....+
T Consensus 85 ~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 85 KVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred eeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 8999999999999999999999998888888777 467899999999999999999999999999999998876544
No 140
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=97.83 E-value=2.5e-05 Score=86.10 Aligned_cols=166 Identities=13% Similarity=0.108 Sum_probs=104.9
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCC-----CCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcc
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNED-----HEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAV 626 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~-----~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~ 626 (943)
.|.|.||.+.++.++|+.||...|.|..+.|+...+ ...-.|||.|.+...+..|.. |....|-++.|.|..+.
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p~~ 87 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRPYG 87 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEecC
Confidence 688999999999999999999999999999877533 235699999999999987765 88888888888887543
Q ss_pred cCCCc------C-----CCCCCCCCCCCCCCcC---CCCCCCc---------------------eEEEeccCCCcCCCCC
Q 002280 627 LDGSI------M-----DNSGNPPFHGIPKHAL---PLLKKPT---------------------EVLKLKNVFNPEGFSS 671 (943)
Q Consensus 627 ~~~~~------~-----~~~~~~~~~~ip~~~~---~~~~~ps---------------------~vL~L~Nlv~~~~l~~ 671 (943)
..... . ...+..++.++..... +....|+ +++++.+|+...
T Consensus 88 ~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~---- 163 (479)
T KOG4676|consen 88 DEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAA---- 163 (479)
T ss_pred CCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhh----
Confidence 21110 0 0011111111100000 0111222 233333333322
Q ss_pred CChHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCCccC
Q 002280 672 LSELEVEEVLEDVRLECARFGSVKSVNVVKYGDSNISTIQACEGNENTASAGVGQNLTNDETN 734 (943)
Q Consensus 672 i~~~~~~ei~eDlre~fskFG~V~~V~I~r~~~g~~~G~~FVeF~~~e~A~~Ai~~LnGr~~~ 734 (943)
++.++-+.|..||.|....+.-.. ...+.-|+|..-.....|+.+ +|+.|.
T Consensus 164 --------~l~e~~e~f~r~Gev~ya~~ask~---~s~~c~~sf~~qts~~halr~-~gre~k 214 (479)
T KOG4676|consen 164 --------ILPESGESFERKGEVSYAHTASKS---RSSSCSHSFRKQTSSKHALRS-HGRERK 214 (479)
T ss_pred --------cchhhhhhhhhcchhhhhhhhccC---CCcchhhhHhhhhhHHHHHHh-cchhhh
Confidence 336788899999999876665432 333445888877777776554 566665
No 141
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.77 E-value=0.00028 Score=80.95 Aligned_cols=157 Identities=13% Similarity=0.132 Sum_probs=97.6
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecC-----CCCCC---EEEEeecChhHHHHHHHHhCCCccCCeEEEEE
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE-----DHEEP---CAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAV 623 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~-----~~skG---~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~ 623 (943)
+||||+||+.++|+.|...|..||.+. |.+.... ...+| |+|+.|++...+..-+.+-. ++...+.+.
T Consensus 261 KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~---~~~~~~yf~ 336 (520)
T KOG0129|consen 261 KVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACS---EGEGNYYFK 336 (520)
T ss_pred ceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHh---hcccceEEE
Confidence 999999999999999999999999874 4554211 12356 99999999888776554322 122222222
Q ss_pred EcccCCCcCC------CCCCCCCCCCCCCcCCCCCCCceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhcCCCCeEEE
Q 002280 624 QAVLDGSIMD------NSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSV 697 (943)
Q Consensus 624 ~A~~~~~~~~------~~~~~~~~~ip~~~~~~~~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskFG~V~~V 697 (943)
...+...... ......|.- .. ...-.|.++++|..+.-+... +++-.|.+|+ ||.|.-|
T Consensus 337 vss~~~k~k~VQIrPW~laDs~fv~--d~--sq~lDprrTVFVGgvprpl~A-----~eLA~imd~l------yGgV~ya 401 (520)
T KOG0129|consen 337 VSSPTIKDKEVQIRPWVLADSDFVL--DH--NQPIDPRRTVFVGGLPRPLTA-----EELAMIMEDL------FGGVLYV 401 (520)
T ss_pred EecCcccccceeEEeeEeccchhhh--cc--CcccCccceEEecCCCCcchH-----HHHHHHHHHh------cCceEEE
Confidence 1111111100 000000000 00 001247899999999765443 4455555544 9999999
Q ss_pred EEecC-CCCCcceeEEEEeCCHHHHHHHHHH
Q 002280 698 NVVKY-GDSNISTIQACEGNENTASAGVGQN 727 (943)
Q Consensus 698 ~I~r~-~~g~~~G~~FVeF~~~e~A~~Ai~~ 727 (943)
-|..+ .-..-+|.|=|+|.+..+=.+||.+
T Consensus 402 GIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 402 GIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred EeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 99987 4455667788999998877666543
No 142
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.77 E-value=2.2e-05 Score=85.38 Aligned_cols=79 Identities=16% Similarity=0.131 Sum_probs=70.8
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcccc
Q 002280 459 SNRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSG 537 (943)
Q Consensus 459 ~~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~G 537 (943)
..++.+.|||--|.+-+|.++|.-+|+.||.+.+. ..|.+..+|.+..||||+|.+.+++++|.- |++..|.+
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sc------eVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDD 308 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSC------EVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDD 308 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceee------eEEecccccchhheeeeeecchhhHHHHHhhhcceeecc
Confidence 45678899999999999999999999999976554 356778899999999999999999999998 99999999
Q ss_pred cccccc
Q 002280 538 SILKIK 543 (943)
Q Consensus 538 r~LkV~ 543 (943)
+.|.|-
T Consensus 309 rRIHVD 314 (479)
T KOG0415|consen 309 RRIHVD 314 (479)
T ss_pred ceEEee
Confidence 999885
No 143
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=97.69 E-value=2.5e-05 Score=90.03 Aligned_cols=68 Identities=18% Similarity=0.371 Sum_probs=62.6
Q ss_pred EEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEE
Q 002280 551 VAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLT 621 (943)
Q Consensus 551 ~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~ 621 (943)
.+|+|-|||..+++++|..+|+.||.|+.|+.-. ..+|.+||+|.|+.+|+.|+++|++..|.|+.|.
T Consensus 76 ~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~---~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 76 GTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP---NKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred ceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc---ccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 3999999999999999999999999999976433 3689999999999999999999999999999888
No 144
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.62 E-value=5.7e-05 Score=83.35 Aligned_cols=167 Identities=10% Similarity=0.030 Sum_probs=118.8
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEe--cCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEV--NEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDG 629 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~--d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~ 629 (943)
++|++++...+.+.++..++..+|.+....+.. +...++|++++.|...+.+..|+.......+.++.+.........
T Consensus 90 ~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~~~~ 169 (285)
T KOG4210|consen 90 TFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNTRRG 169 (285)
T ss_pred cccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccccccc
Confidence 889999999999888888999998776654433 355789999999999999999997443334444444332211111
Q ss_pred CcCCCCCCCCCCCCCCCc--CCCCCCCceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhcCCCCeEEEEEecC-CCCC
Q 002280 630 SIMDNSGNPPFHGIPKHA--LPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKY-GDSN 706 (943)
Q Consensus 630 ~~~~~~~~~~~~~ip~~~--~~~~~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskFG~V~~V~I~r~-~~g~ 706 (943)
..+... ......+..++.+.|+....+. ++|+.+|..+|.|..|.++.. ..+.
T Consensus 170 ------------~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~------------d~~~~~~~~~~~i~~~r~~~~~~s~~ 225 (285)
T KOG4210|consen 170 ------------LRPKNKLSRLSSGPSDTIFFVGELDFSLTR------------DDLKEHFVSSGEITSVRLPTDEESGD 225 (285)
T ss_pred ------------ccccchhcccccCccccceeecccccccch------------HHHhhhccCcCcceeeccCCCCCccc
Confidence 001100 1112233445557777554343 678899999999999999876 5677
Q ss_pred cceeEEEEeCCHHHHHHHHHHhCCCccCCCceEEEEe
Q 002280 707 ISTIQACEGNENTASAGVGQNLTNDETNEKGERLEEV 743 (943)
Q Consensus 707 ~~G~~FVeF~~~e~A~~Ai~~LnGr~~~~k~~~v~~~ 743 (943)
..||+||.|.....+..|+.. ++..+++.++.+...
T Consensus 226 ~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 226 SKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEED 261 (285)
T ss_pred hhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccC
Confidence 899999999999999999888 899999888777443
No 145
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.61 E-value=3e-05 Score=81.83 Aligned_cols=68 Identities=18% Similarity=0.161 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHhc-CCCCeEEEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCceEEEE
Q 002280 675 LEVEEVLEDVRLECA-RFGSVKSVNVVKYGDSNISTIQACEGNENTASAGVGQNLTNDETNEKGERLEE 742 (943)
Q Consensus 675 ~~~~ei~eDlre~fs-kFG~V~~V~I~r~~~g~~~G~~FVeF~~~e~A~~Ai~~LnGr~~~~k~~~v~~ 742 (943)
..++++++||..+|+ +||+|+.++|..+-.....|-+||.|...++|++|++.|||++|+++.+....
T Consensus 76 ~~~defyEd~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~ 144 (260)
T KOG2202|consen 76 RHEDEFYEDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAEL 144 (260)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeee
Confidence 347888899999999 99999999999887777788889999999999999999999999999988533
No 146
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.60 E-value=8.7e-05 Score=87.16 Aligned_cols=84 Identities=26% Similarity=0.278 Sum_probs=66.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccccc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr 538 (943)
.+....|||+||++.++++.|...|..||.+.++.... |-....-.+.+.+|||-|-+..+|++|+. |+|+.+.+.
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimw---pRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~ 247 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMW---PRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEY 247 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeec---ccchhhhccccccceeeehhhhhHHHHHHHhcceeeeee
Confidence 45567899999999999999999999999765542221 11222224567799999999999999999 999999999
Q ss_pred cccccCCc
Q 002280 539 ILKIKRPK 546 (943)
Q Consensus 539 ~LkV~rp~ 546 (943)
.+++.+.+
T Consensus 248 e~K~gWgk 255 (877)
T KOG0151|consen 248 EMKLGWGK 255 (877)
T ss_pred eeeecccc
Confidence 99888654
No 147
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=97.58 E-value=9.6e-05 Score=79.07 Aligned_cols=77 Identities=26% Similarity=0.322 Sum_probs=63.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcccccc
Q 002280 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~ 539 (943)
....+|+|.|||+.+++++|+++|.+|+. +..+ .|..-..|.+.|.|-|.|...++|..|++ |+|+.+.|++
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~---~~r~----~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~ 153 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLKELFAEFGE---LKRV----AVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRP 153 (243)
T ss_pred CCcceeeeecCCcCcchHHHHHHHHHhcc---ceEE----eeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCce
Confidence 34568999999999999999999999873 1111 22333457888999999999999999999 9999999999
Q ss_pred ccccC
Q 002280 540 LKIKR 544 (943)
Q Consensus 540 LkV~r 544 (943)
|++..
T Consensus 154 mk~~~ 158 (243)
T KOG0533|consen 154 MKIEI 158 (243)
T ss_pred eeeEE
Confidence 88763
No 148
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.58 E-value=0.00016 Score=83.12 Aligned_cols=77 Identities=21% Similarity=0.199 Sum_probs=59.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHHccCCccccccc
Q 002280 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSIL 540 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~LnG~~l~Gr~L 540 (943)
....+|||+|||+++|+.+|.++|..||.+... . ..++. .-+....||||+|.+.+++..||..+-+.++|+.|
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~---~--I~vr~-~~~~~~~fgFV~f~~~~~~~~~i~Asp~~ig~~kl 359 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELEEVFKQFGPIKEG---G--IQVRS-PGGKNPCFGFVEFENAAAVQNAIEASPLEIGGRKL 359 (419)
T ss_pred ecccceEeecCCCCCCHHHHHHHHhhccccccc---c--eEEec-cCCCcCceEEEEEeecchhhhhhhcCccccCCeeE
Confidence 334569999999999999999999999964331 0 11222 12344489999999999999999988888899888
Q ss_pred ccc
Q 002280 541 KIK 543 (943)
Q Consensus 541 kV~ 543 (943)
.|.
T Consensus 360 ~Ve 362 (419)
T KOG0116|consen 360 NVE 362 (419)
T ss_pred EEE
Confidence 876
No 149
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.54 E-value=0.00013 Score=85.63 Aligned_cols=74 Identities=16% Similarity=0.417 Sum_probs=68.0
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecC-----CCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEc
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE-----DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQA 625 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~-----~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A 625 (943)
.|||+||++.++++.|...|..||+|.+++|+... ...+.|+||-|-+..+|+.|+..|+|+.+.+..+++.|+
T Consensus 176 Nlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gWg 254 (877)
T KOG0151|consen 176 NLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGWG 254 (877)
T ss_pred ceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeeccc
Confidence 89999999999999999999999999999887652 234779999999999999999999999999999999987
No 150
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.45 E-value=0.00024 Score=81.81 Aligned_cols=75 Identities=21% Similarity=0.387 Sum_probs=64.0
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecC--CCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEccc
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 627 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~--~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~ 627 (943)
.|||.|||.+++..+|.++|..||.|+...|..-. +.+..||||+|.+...+..||.+- -..++++.|.|.--.+
T Consensus 290 ~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 290 GIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGGRKLNVEEKRP 366 (419)
T ss_pred ceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCCeeEEEEeccc
Confidence 79999999999999999999999999998775542 334489999999999999999854 7788999999985433
No 151
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.40 E-value=0.00089 Score=61.97 Aligned_cols=74 Identities=16% Similarity=0.293 Sum_probs=61.9
Q ss_pred EEEEecCCCCCCHHHHHHHHhhc--CCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccC----CeEEEEE
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAF--GPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVG----GQVLTAV 623 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~f--G~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~----gr~L~V~ 623 (943)
+|+|.|||...+.++|.+++... |...-+.|+.| +..+.|||||-|.+++.|.+-...++|..+. .+...|.
T Consensus 3 TvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i~ 82 (97)
T PF04059_consen 3 TVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEIS 82 (97)
T ss_pred eEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEEe
Confidence 79999999999999999988764 66666777777 4567999999999999999999999998874 4556666
Q ss_pred Ec
Q 002280 624 QA 625 (943)
Q Consensus 624 ~A 625 (943)
+|
T Consensus 83 yA 84 (97)
T PF04059_consen 83 YA 84 (97)
T ss_pred hh
Confidence 65
No 152
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.39 E-value=0.00024 Score=74.89 Aligned_cols=79 Identities=16% Similarity=0.211 Sum_probs=68.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccccc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr 538 (943)
....-+||+|.|-..+|.+.|-..|..|-. ....+.|.+..+|+++||+||-|.++.++..||. |||..++.+
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfps------f~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsr 260 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPS------FQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSR 260 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccc------hhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccc
Confidence 344578999999999999999999988643 2233467889999999999999999999999999 999999999
Q ss_pred cccccC
Q 002280 539 ILKIKR 544 (943)
Q Consensus 539 ~LkV~r 544 (943)
+|+++.
T Consensus 261 piklRk 266 (290)
T KOG0226|consen 261 PIKLRK 266 (290)
T ss_pred hhHhhh
Confidence 998874
No 153
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.22 E-value=0.00039 Score=74.49 Aligned_cols=77 Identities=12% Similarity=0.235 Sum_probs=69.3
Q ss_pred eeEEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcc
Q 002280 549 VEVAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAV 626 (943)
Q Consensus 549 ~~~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~ 626 (943)
....+||+|+.+.++.+++...|+.||.|..+.|+.+ .+..+||+||+|.+.+.+.+|+. |||..|.|+.|.|.+..
T Consensus 100 d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~r 178 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLKR 178 (231)
T ss_pred CCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeeee
Confidence 4458999999999999999999999999998888877 44579999999999999999999 99999999999998653
No 154
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.21 E-value=0.00071 Score=62.63 Aligned_cols=69 Identities=19% Similarity=0.276 Sum_probs=54.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccc
Q 002280 464 RRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFS 536 (943)
Q Consensus 464 rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~ 536 (943)
.||+|.|||...|.++|.+++.... .| ...-..+-++..++.+.|||||-|.+++.|..... ++|..+.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~--~g--~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~ 71 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHF--KG--KYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWP 71 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhc--cC--cceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccc
Confidence 4899999999999999999998753 11 11111233566778899999999999999999998 9987663
No 155
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.17 E-value=0.0014 Score=58.42 Aligned_cols=70 Identities=21% Similarity=0.263 Sum_probs=47.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcccccccccc
Q 002280 465 RLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSILKIK 543 (943)
Q Consensus 465 tLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~LkV~ 543 (943)
.|||.|||.+.....|+.-+.+...-+|. .|+.+ +.+.|+|-|.+.+.|.+|+. |+|-.+.|..|.|.
T Consensus 4 ~L~V~NLP~~~d~~~I~~RL~qLsdNCGG-------kVl~v----~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 4 LLYVSNLPTNKDPSSIKNRLRQLSDNCGG-------KVLSV----SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEES--TTS-HHHHHHHHHHHHHTTT---------EEE------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred EEEEecCCCCCCHHHHHHHHHHHhhccCC-------EEEEE----eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 59999999999988877666654333332 44444 36889999999999999999 99999999999998
Q ss_pred CC
Q 002280 544 RP 545 (943)
Q Consensus 544 rp 545 (943)
..
T Consensus 73 ~~ 74 (90)
T PF11608_consen 73 FS 74 (90)
T ss_dssp SS
T ss_pred Ec
Confidence 64
No 156
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.16 E-value=0.00027 Score=75.67 Aligned_cols=78 Identities=18% Similarity=0.142 Sum_probs=65.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHHccCCcccccc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSI 539 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~LnG~~l~Gr~ 539 (943)
.-....+||||+.+.+|.++|...|+.||.+.++ ....+...+..+|||||+|.+.+.+..|+.|||..|.|+.
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~------ti~~d~~~~~~k~~~yvef~~~~~~~~ay~l~gs~i~~~~ 171 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRV------TVPKDKFRGHPKGFAYVEFSSYELVEEAYKLDGSEIPGPA 171 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccce------eeeccccCCCcceeEEEecccHhhhHHHhhcCCccccccc
Confidence 4557899999999999999999999998864332 1334555677999999999999999999999999999999
Q ss_pred cccc
Q 002280 540 LKIK 543 (943)
Q Consensus 540 LkV~ 543 (943)
+.|.
T Consensus 172 i~vt 175 (231)
T KOG4209|consen 172 IEVT 175 (231)
T ss_pred ceee
Confidence 9886
No 157
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.00 E-value=0.00013 Score=81.11 Aligned_cols=150 Identities=15% Similarity=0.223 Sum_probs=109.9
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcC--CeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCC-ccCCeEEEEEEcccC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFG--PLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGL-KVGGQVLTAVQAVLD 628 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG--~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~-~~~gr~L~V~~A~~~ 628 (943)
++|++||.+.++..+|..+|...- --..+ ++ ..||+||.+.+...|.+|++.|+|. .+.|+.+.|.+..+.
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~f-l~-----k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQF-LV-----KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcce-ee-----ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 689999999999999999997641 11111 11 3689999999999999999999995 478999888876554
Q ss_pred CCcCCCCCCCCCCCCCCCcCCCCCCCceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhcCCCCeEEEEEecC-CCCCc
Q 002280 629 GSIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKY-GDSNI 707 (943)
Q Consensus 629 ~~~~~~~~~~~~~~ip~~~~~~~~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskFG~V~~V~I~r~-~~g~~ 707 (943)
.. .++.+.|.|+.. .| -. +-+..+...||.|+.|..... +...+
T Consensus 77 kq-----------------------rsrk~Qirnipp--ql-------~w---evld~Ll~qyg~ve~~eqvnt~~etav 121 (584)
T KOG2193|consen 77 KQ-----------------------RSRKIQIRNIPP--QL-------QW---EVLDSLLAQYGTVENCEQVNTDSETAV 121 (584)
T ss_pred HH-----------------------HhhhhhHhcCCH--HH-------HH---HHHHHHHhccCCHhHhhhhccchHHHH
Confidence 43 244467777643 11 12 345566789999999987543 22221
Q ss_pred ceeEEEEeCCHHHHHHHHHHhCCCccCCCceEEEEecc
Q 002280 708 STIQACEGNENTASAGVGQNLTNDETNEKGERLEEVTD 745 (943)
Q Consensus 708 ~G~~FVeF~~~e~A~~Ai~~LnGr~~~~k~~~v~~~~~ 745 (943)
.-|+|...+.+..|+..|||..+-...+++.+--|
T Consensus 122 ---vnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPd 156 (584)
T KOG2193|consen 122 ---VNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPD 156 (584)
T ss_pred ---HHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCch
Confidence 23799999999999999999999888777665433
No 158
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=96.91 E-value=0.003 Score=56.29 Aligned_cols=67 Identities=10% Similarity=0.200 Sum_probs=46.8
Q ss_pred EEEEecCCCCCCHHH----HHHHHhhcC-CeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcc
Q 002280 552 AIFIGGISRTLSSKM----VMEIVCAFG-PLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAV 626 (943)
Q Consensus 552 ~LfV~NLp~~~teed----L~e~Fs~fG-~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~ 626 (943)
.|+|.|||...+... |+.++..+| .|..| ..+.|+|.|.+.+.|..|++.|+|..+-|+.|.|.+..
T Consensus 4 ~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 4 LLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp EEEEES--TTS-HHHHHHHHHHHHHTTT--EEE----------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred EEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 589999999988765 556666765 55444 35899999999999999999999999999999999763
No 159
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=96.90 E-value=0.0022 Score=74.02 Aligned_cols=83 Identities=6% Similarity=-0.024 Sum_probs=68.2
Q ss_pred CceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCCcc
Q 002280 654 PTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYGDSNISTIQACEGNENTASAGVGQNLTNDET 733 (943)
Q Consensus 654 ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskFG~V~~V~I~r~~~g~~~G~~FVeF~~~e~A~~Ai~~LnGr~~ 733 (943)
-..|++|-|+.- +.+.-+..+..-|..+|++||+|+.+.+|.++.|..+||.|++|.+..+|+.|++.|||..|
T Consensus 57 ~D~vVvv~g~Pv------V~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~l 130 (698)
T KOG2314|consen 57 FDSVVVVDGAPV------VGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRL 130 (698)
T ss_pred cceEEEECCCcc------cChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhccccee
Confidence 356788888754 23334667777889999999999999999998888999999999999999999999999998
Q ss_pred C-CCceEEEE
Q 002280 734 N-EKGERLEE 742 (943)
Q Consensus 734 ~-~k~~~v~~ 742 (943)
. ..|+.+..
T Consensus 131 dknHtf~v~~ 140 (698)
T KOG2314|consen 131 DKNHTFFVRL 140 (698)
T ss_pred cccceEEeeh
Confidence 7 44555443
No 160
>PF06495 Transformer: Fruit fly transformer protein; InterPro: IPR010519 This family consists of transformer proteins from several Drosophila species and also from Ceratitis capitata (Mediterranean fruit fly). The transformer locus (tra) produces an RNA processing protein that alternatively splices the doublesex pre-mRNA in the sex determination hierarchy of Drosophila melanogaster [].; GO: 0006397 mRNA processing, 0046660 female sex differentiation, 0005634 nucleus
Probab=96.74 E-value=0.0045 Score=61.93 Aligned_cols=17 Identities=18% Similarity=-0.031 Sum_probs=13.8
Q ss_pred cCCCCCCCCCccccCCc
Q 002280 389 KSAKWDVAPVETYSVPS 405 (943)
Q Consensus 389 r~~~~di~P~~~~~v~~ 405 (943)
-...|++||.+|+.+.+
T Consensus 115 I~~yv~VPp~gf~~~y~ 131 (182)
T PF06495_consen 115 ITKYVDVPPPGFEYAYG 131 (182)
T ss_pred eeeeccCCCcccccccC
Confidence 45789999999986665
No 161
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=96.61 E-value=0.00085 Score=72.71 Aligned_cols=9 Identities=22% Similarity=0.239 Sum_probs=4.0
Q ss_pred CCCCccccc
Q 002280 84 KSPGVDVHT 92 (943)
Q Consensus 84 ~~~~~~~~~ 92 (943)
+||+.-+-.
T Consensus 217 LFPRIPVPv 225 (453)
T KOG2888|consen 217 LFPRIPVPV 225 (453)
T ss_pred cCCCCCchH
Confidence 445444433
No 162
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=96.59 E-value=0.0029 Score=70.10 Aligned_cols=84 Identities=19% Similarity=0.148 Sum_probs=66.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccc---cCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccc
Q 002280 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHV---HGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFS 536 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i---~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~ 536 (943)
...-+|||-+||.++++++|.++|.+|+.+. -..- +.+.+-.+..|+..|+-|.|.|.++..|+.|+. +++..|.
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ik-rnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIK-RNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceec-cCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 4456899999999999999999998887532 1111 112223455678899999999999999999999 9999999
Q ss_pred cccccccCC
Q 002280 537 GSILKIKRP 545 (943)
Q Consensus 537 Gr~LkV~rp 545 (943)
|.+|+|...
T Consensus 143 gn~ikvs~a 151 (351)
T KOG1995|consen 143 GNTIKVSLA 151 (351)
T ss_pred CCCchhhhh
Confidence 998888643
No 163
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=96.43 E-value=0.0025 Score=70.54 Aligned_cols=78 Identities=17% Similarity=0.195 Sum_probs=68.8
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeE--------EEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEE
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKA--------YHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLT 621 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~--------v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~ 621 (943)
+|||.+||..+++.+|.++|.++|.|.. |.|.++ ++..+|-|.|.|.+...|+.|+.-+++..|.+.+|+
T Consensus 68 ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~gn~ik 147 (351)
T KOG1995|consen 68 TIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGNTIK 147 (351)
T ss_pred cceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccCCCch
Confidence 8999999999999999999999998865 555555 456799999999999999999999999999999999
Q ss_pred EEEcccCC
Q 002280 622 AVQAVLDG 629 (943)
Q Consensus 622 V~~A~~~~ 629 (943)
|..|....
T Consensus 148 vs~a~~r~ 155 (351)
T KOG1995|consen 148 VSLAERRT 155 (351)
T ss_pred hhhhhhcc
Confidence 98775543
No 164
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.37 E-value=0.0062 Score=57.40 Aligned_cols=57 Identities=16% Similarity=0.299 Sum_probs=38.3
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNG 612 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG 612 (943)
.|.|.+++..++-++|+++|+.||.|..|.+.. +...|||.|.+.+.|..|+..+.-
T Consensus 3 il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~----G~~~g~VRf~~~~~A~~a~~~~~~ 59 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSR----GDTEGYVRFKTPEAAQKALEKLKE 59 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-SS--EEEEE--T----T-SEEEEEESS---HHHHHHHHHH
T ss_pred EEEEecCCCCcCHHHHHHHHHhcCCcceEEecC----CCCEEEEEECCcchHHHHHHHHHh
Confidence 477888999999999999999999999888754 456899999999999999987753
No 165
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=95.79 E-value=0.019 Score=62.76 Aligned_cols=75 Identities=20% Similarity=0.359 Sum_probs=60.5
Q ss_pred EEEEecCCCCCCHHHH------HHHHhhcCCeeEEEEEecCC---CCCC--EEEEeecChhHHHHHHHHhCCCccCCeEE
Q 002280 552 AIFIGGISRTLSSKMV------MEIVCAFGPLKAYHFEVNED---HEEP--CAFIEYVDQLVTPKAIAGLNGLKVGGQVL 620 (943)
Q Consensus 552 ~LfV~NLp~~~teedL------~e~Fs~fG~I~~v~l~~d~~---~skG--~aFVeF~~~e~A~kAl~~LnG~~~~gr~L 620 (943)
-+||-+||+.+-.|++ .++|.+||.|..|.|-+.+. ...+ -+||+|.+.++|..||++.+|..+.|+.|
T Consensus 116 LvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~l 195 (480)
T COG5175 116 LVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRVL 195 (480)
T ss_pred eeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCceE
Confidence 6899999987776662 57999999999887754421 1122 34999999999999999999999999999
Q ss_pred EEEEcc
Q 002280 621 TAVQAV 626 (943)
Q Consensus 621 ~V~~A~ 626 (943)
++.|..
T Consensus 196 katYGT 201 (480)
T COG5175 196 KATYGT 201 (480)
T ss_pred eeecCc
Confidence 998753
No 166
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=95.47 E-value=0.033 Score=59.34 Aligned_cols=98 Identities=12% Similarity=0.062 Sum_probs=78.5
Q ss_pred hHHHHHHHHhCCCccCCeEEEEEEcccCCCcCCCCCCCCCCCCCCCcCCCCCCCceEEEeccCCCcCCCCCCChHHHHHH
Q 002280 601 LVTPKAIAGLNGLKVGGQVLTAVQAVLDGSIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEV 680 (943)
Q Consensus 601 e~A~kAl~~LnG~~~~gr~L~V~~A~~~~~~~~~~~~~~~~~ip~~~~~~~~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei 680 (943)
.-|..|-..|+|....|+.|.|.+|.. ..|+|.|+..-...
T Consensus 5 t~ae~ak~eLd~~~~~~~~lr~rfa~~----------------------------a~l~V~nl~~~~sn----------- 45 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFPKGRSLRVRFAMH----------------------------AELYVVNLMQGASN----------- 45 (275)
T ss_pred cHHHHHHHhcCCCCCCCCceEEEeecc----------------------------ceEEEEecchhhhh-----------
Confidence 346677788999999999999998833 34677777443222
Q ss_pred HHHHHHHhcCCCCeEEEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCce
Q 002280 681 LEDVRLECARFGSVKSVNVVKYGDSNISTIQACEGNENTASAGVGQNLTNDETNEKGE 738 (943)
Q Consensus 681 ~eDlre~fskFG~V~~V~I~r~~~g~~~G~~FVeF~~~e~A~~Ai~~LnGr~~~~k~~ 738 (943)
+-+.+.|+.||.|+...+..+..+...+-++|+|...-.|.+|...++-.-|++.+.
T Consensus 46 -dll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~ 102 (275)
T KOG0115|consen 46 -DLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTG 102 (275)
T ss_pred -HHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCC
Confidence 346788999999999999999888888899999999999999999997666665443
No 167
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=95.33 E-value=0.025 Score=62.12 Aligned_cols=79 Identities=11% Similarity=0.037 Sum_probs=62.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccccc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr 538 (943)
+...-.+|||||-|++|.++|.+.+...| +..+...+-..+...|+++|||+|...+.....+-|+ |-...|.|+
T Consensus 77 ~Grk~~~YvGNL~W~TTD~DL~~A~~S~G----~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ 152 (498)
T KOG4849|consen 77 EGRKYCCYVGNLLWYTTDADLLKALQSTG----LAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQ 152 (498)
T ss_pred cCceEEEEecceeEEeccHHHHHHHHhhh----HHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCC
Confidence 34455799999999999999999996655 5555444344555668999999999999999999999 888888887
Q ss_pred cccc
Q 002280 539 ILKI 542 (943)
Q Consensus 539 ~LkV 542 (943)
.-.|
T Consensus 153 ~P~V 156 (498)
T KOG4849|consen 153 SPTV 156 (498)
T ss_pred CCee
Confidence 6444
No 168
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=95.21 E-value=0.049 Score=63.39 Aligned_cols=72 Identities=17% Similarity=0.331 Sum_probs=58.5
Q ss_pred EEEEecCCCCCCH------HHHHHHHhhcCCeeEEEEEec-CCCCCCEEEEeecChhHHHHHHHHhCCCccC-CeEEEEE
Q 002280 552 AIFIGGISRTLSS------KMVMEIVCAFGPLKAYHFEVN-EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVG-GQVLTAV 623 (943)
Q Consensus 552 ~LfV~NLp~~~te------edL~e~Fs~fG~I~~v~l~~d-~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~-gr~L~V~ 623 (943)
.|+|-|+|.--.. .-|..+|+++|+|..+.++.+ .+..+||.|++|.+..+|..|++.|||..|. +.++.|.
T Consensus 60 vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~v~ 139 (698)
T KOG2314|consen 60 VVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFFVR 139 (698)
T ss_pred EEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEEee
Confidence 7888888864332 346789999999999888766 4567999999999999999999999999985 4566665
No 169
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=94.81 E-value=0.052 Score=57.86 Aligned_cols=86 Identities=16% Similarity=0.225 Sum_probs=72.7
Q ss_pred HHHHHHH-ccCCccccccccccCCccceeEEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec-CCCCCCEEEEeecCh
Q 002280 523 DASAALC-CDGCSFSGSILKIKRPKEFVEVAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN-EDHEEPCAFIEYVDQ 600 (943)
Q Consensus 523 dA~~Al~-LnG~~l~Gr~LkV~rp~d~~~~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d-~~~skG~aFVeF~~~ 600 (943)
-|..|-. |++....|+.|.|..... ..|+|.||...++.+.+...|+.||+|....+..| .+...+-++|+|...
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~---a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k 82 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH---AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKK 82 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc---ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcc
Confidence 3556666 899999999999987655 38999999999999999999999999988555444 567788999999999
Q ss_pred hHHHHHHHHhC
Q 002280 601 LVTPKAIAGLN 611 (943)
Q Consensus 601 e~A~kAl~~Ln 611 (943)
-.|.+|+....
T Consensus 83 ~~a~~a~rr~~ 93 (275)
T KOG0115|consen 83 PNARKAARRCR 93 (275)
T ss_pred hhHHHHHHHhc
Confidence 99999998764
No 170
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=94.59 E-value=0.056 Score=50.99 Aligned_cols=53 Identities=25% Similarity=0.231 Sum_probs=34.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH
Q 002280 465 RLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC 529 (943)
Q Consensus 465 tLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~ 529 (943)
.|+|.+++..++-++|+++|++|+ .|.-+........|||-|.+++.|..|+.
T Consensus 3 il~~~g~~~~~~re~iK~~f~~~g------------~V~yVD~~~G~~~g~VRf~~~~~A~~a~~ 55 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQFG------------EVAYVDFSRGDTEGYVRFKTPEAAQKALE 55 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-SS--------------EEEEE--TT-SEEEEEESS---HHHHHH
T ss_pred EEEEecCCCCcCHHHHHHHHHhcC------------CcceEEecCCCCEEEEEECCcchHHHHHH
Confidence 588999999999999999998877 34445555556679999999999999998
No 171
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=94.39 E-value=0.044 Score=58.39 Aligned_cols=68 Identities=16% Similarity=0.373 Sum_probs=58.5
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCC----------CCCC----EEEEeecChhHHHHHHHHhCCCccCC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNED----------HEEP----CAFIEYVDQLVTPKAIAGLNGLKVGG 617 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~----------~skG----~aFVeF~~~e~A~kAl~~LnG~~~~g 617 (943)
.||+++||+.+...-|+++|+.||.|-.|.|..... .+.+ -|+|+|.+...|......|||..|+|
T Consensus 76 VvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Igg 155 (278)
T KOG3152|consen 76 VVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIGG 155 (278)
T ss_pred EEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccCC
Confidence 899999999999999999999999999999876522 1222 36799999999999999999999998
Q ss_pred eE
Q 002280 618 QV 619 (943)
Q Consensus 618 r~ 619 (943)
+.
T Consensus 156 kk 157 (278)
T KOG3152|consen 156 KK 157 (278)
T ss_pred CC
Confidence 75
No 172
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=94.25 E-value=0.094 Score=43.18 Aligned_cols=52 Identities=19% Similarity=0.366 Sum_probs=41.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHH
Q 002280 464 RRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAAL 528 (943)
Q Consensus 464 rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al 528 (943)
+.|-|.|.|+...+.-| ..|.+|| .|.++.......++||.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~vl-~~F~~fG------------eI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEEVL-EHFASFG------------EIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHHHH-HHHHhcC------------CEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 46888999888776554 4887888 5566666667889999999999999996
No 173
>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]
Probab=94.24 E-value=0.12 Score=60.27 Aligned_cols=10 Identities=20% Similarity=0.541 Sum_probs=4.6
Q ss_pred HHHHHhhcCC
Q 002280 567 VMEIVCAFGP 576 (943)
Q Consensus 567 L~e~Fs~fG~ 576 (943)
|++++.+||.
T Consensus 520 LRevLKKyG~ 529 (752)
T KOG0670|consen 520 LREVLKKYGR 529 (752)
T ss_pred HHHHHHHhCc
Confidence 3444445543
No 174
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=94.18 E-value=0.085 Score=43.42 Aligned_cols=39 Identities=15% Similarity=0.125 Sum_probs=32.8
Q ss_pred HHHHHHhcCCCCeEEEEEecCCCCCcceeEEEEeCCHHHHHHHH
Q 002280 682 EDVRLECARFGSVKSVNVVKYGDSNISTIQACEGNENTASAGVG 725 (943)
Q Consensus 682 eDlre~fskFG~V~~V~I~r~~~g~~~G~~FVeF~~~e~A~~Ai 725 (943)
+.|...|..||+|+.+.++. ..-+.||+|.+..+|++|+
T Consensus 15 ~~vl~~F~~fGeI~~~~~~~-----~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 15 EEVLEHFASFGEIVDIYVPE-----STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred HHHHHHHHhcCCEEEEEcCC-----CCcEEEEEECCHHHHHhhC
Confidence 56788999999999999983 2336799999999999984
No 175
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=94.08 E-value=0.19 Score=46.93 Aligned_cols=72 Identities=17% Similarity=0.225 Sum_probs=49.3
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEE-EEec--------CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeE-EE
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYH-FEVN--------EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQV-LT 621 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~-l~~d--------~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~-L~ 621 (943)
.|.|-+.|+. ....|.+.|++||.|.... +.++ ...+..+..|+|.+..+|.+||. -||..|+|.. +-
T Consensus 8 wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~mvG 85 (100)
T PF05172_consen 8 WVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLMVG 85 (100)
T ss_dssp EEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEEEE
T ss_pred EEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEEEE
Confidence 4677788887 5567889999999987653 1111 01246799999999999999997 8999998864 45
Q ss_pred EEEc
Q 002280 622 AVQA 625 (943)
Q Consensus 622 V~~A 625 (943)
|.++
T Consensus 86 V~~~ 89 (100)
T PF05172_consen 86 VKPC 89 (100)
T ss_dssp EEE-
T ss_pred EEEc
Confidence 6655
No 176
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=93.77 E-value=0.059 Score=61.05 Aligned_cols=75 Identities=17% Similarity=0.174 Sum_probs=55.2
Q ss_pred CCceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhcCCCCeEEEEEecC---CC---CCcc--------eeEEEEeCCH
Q 002280 653 KPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKY---GD---SNIS--------TIQACEGNEN 718 (943)
Q Consensus 653 ~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskFG~V~~V~I~r~---~~---g~~~--------G~~FVeF~~~ 718 (943)
-++++|++.||...-- .+-|..+|+.||.|.+|.|.++ +. ++.+ -.|+|+|...
T Consensus 229 l~srtivaenLP~Dh~------------~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~ 296 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHS------------YENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEV 296 (484)
T ss_pred cccceEEEecCCcchH------------HHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhh
Confidence 4789999999854222 2678889999999999999987 21 2222 2589999999
Q ss_pred HHHHHHHHHhCCCccCCCceE
Q 002280 719 TASAGVGQNLTNDETNEKGER 739 (943)
Q Consensus 719 e~A~~Ai~~LnGr~~~~k~~~ 739 (943)
+.|.+|...||-..-.-..++
T Consensus 297 ~~A~KA~e~~~~e~~wr~glk 317 (484)
T KOG1855|consen 297 EAARKARELLNPEQNWRMGLK 317 (484)
T ss_pred HHHHHHHHhhchhhhhhhcch
Confidence 999999999965544333333
No 177
>KOG1847 consensus mRNA splicing factor [RNA processing and modification]
Probab=93.69 E-value=0.07 Score=62.85 Aligned_cols=21 Identities=43% Similarity=0.599 Sum_probs=9.8
Q ss_pred CCCcccccCchhhhhhhhccC
Q 002280 219 KDRHADKSGEKSERESKRKHR 239 (943)
Q Consensus 219 ~dr~r~r~r~~~~~~~~~~~r 239 (943)
.||+.+.+..-+..+.++..+
T Consensus 705 ~dr~ssksk~ep~ee~k~~~~ 725 (878)
T KOG1847|consen 705 KDRHSSKSKHEPSEEDKYHSR 725 (878)
T ss_pred CCcccccccCCChhhhhhhhh
Confidence 344444444444444444444
No 178
>KOG1847 consensus mRNA splicing factor [RNA processing and modification]
Probab=93.57 E-value=0.083 Score=62.23 Aligned_cols=10 Identities=30% Similarity=0.222 Sum_probs=5.9
Q ss_pred hhhhhhhhhh
Q 002280 125 DLETKLKEDY 134 (943)
Q Consensus 125 ~~~~~~~~~~ 134 (943)
.++.||-.|.
T Consensus 635 va~eKLaqe~ 644 (878)
T KOG1847|consen 635 VAEEKLAQEG 644 (878)
T ss_pred HHHHHHHhhh
Confidence 4566666554
No 179
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=93.46 E-value=0.24 Score=49.12 Aligned_cols=57 Identities=18% Similarity=0.342 Sum_probs=44.9
Q ss_pred HHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccC
Q 002280 565 KMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLD 628 (943)
Q Consensus 565 edL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~ 628 (943)
.+|.+.|..||.+.-++++- +.-+|+|.+-.+|.+|+. |+|.+++|+.|.|....|.
T Consensus 51 ~~ll~~~~~~GevvLvRfv~------~~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVG------DTMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEET------TCEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE----
T ss_pred HHHHHHHHhCCceEEEEEeC------CeEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCcc
Confidence 36778888999887776643 578999999999999997 9999999999999876553
No 180
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=93.37 E-value=0.033 Score=59.26 Aligned_cols=79 Identities=14% Similarity=0.046 Sum_probs=54.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCccee--eeeeecCCC--e--eeEEeCCHHHHHHHHH-ccCCc
Q 002280 462 PMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCI--GCVIQREKG--Q--AFVEFLTAEDASAALC-CDGCS 534 (943)
Q Consensus 462 ~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~--~~~~~~skG--y--AFVeF~s~edA~~Al~-LnG~~ 534 (943)
..-.||+++||+.+...-|+++|+.||.+--+...+...... ...-+.+.+ | |.|||.+...|..+.. |||..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 345799999999999999999999999632221111110000 001122222 2 8999999999999777 99999
Q ss_pred cccccc
Q 002280 535 FSGSIL 540 (943)
Q Consensus 535 l~Gr~L 540 (943)
|+|+.-
T Consensus 153 Iggkk~ 158 (278)
T KOG3152|consen 153 IGGKKK 158 (278)
T ss_pred cCCCCC
Confidence 999764
No 181
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=93.34 E-value=0.065 Score=58.96 Aligned_cols=73 Identities=12% Similarity=0.185 Sum_probs=60.5
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCC--eeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEE
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGP--LKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQ 624 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~--I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~ 624 (943)
++|||||-+.+|++||.+.+...|. +..++++-+ .+.++|||+|...+.....+.+..|-...|.|+.-.|..
T Consensus 82 ~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~ 158 (498)
T KOG4849|consen 82 CCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLS 158 (498)
T ss_pred EEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeec
Confidence 8999999999999999999988773 444555444 468899999999999999999999988889888766653
No 182
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=93.15 E-value=0.2 Score=46.89 Aligned_cols=78 Identities=19% Similarity=0.147 Sum_probs=47.7
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCC-cceeeeeeecCCCeeeEEeCCHHHHHHHHHccCCcccccccc
Q 002280 463 MRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGS-LPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSILK 541 (943)
Q Consensus 463 ~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~-~~v~~~~~~~skGyAFVeF~s~edA~~Al~LnG~~l~Gr~Lk 541 (943)
..-|.|-+.|+. .-..|...|++||.+.....+... .-+..-..........|.|.++.+|.+||..||..|.|.-|-
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~NG~i~~g~~mv 84 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQKNGTIFSGSLMV 84 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTTTTEEETTCEEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHhCCeEEcCcEEE
Confidence 456888899988 566788899999854321100000 000000123345678999999999999999999999886653
No 183
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=92.93 E-value=0.16 Score=55.83 Aligned_cols=59 Identities=12% Similarity=-0.001 Sum_probs=47.4
Q ss_pred HHHhcCCCCeEEEEEecCCCCCcc--e-e-EEEEeCCHHHHHHHHHHhCCCccCCCceEEEEe
Q 002280 685 RLECARFGSVKSVNVVKYGDSNIS--T-I-QACEGNENTASAGVGQNLTNDETNEKGERLEEV 743 (943)
Q Consensus 685 re~fskFG~V~~V~I~r~~~g~~~--G-~-~FVeF~~~e~A~~Ai~~LnGr~~~~k~~~v~~~ 743 (943)
.+.|.+||+|..|.|-+....... + + +||+|.+.++|..||+++.|....++.++....
T Consensus 138 ~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~lkatYG 200 (480)
T COG5175 138 HEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRVLKATYG 200 (480)
T ss_pred hhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCceEeeecC
Confidence 467999999999999876322211 1 2 599999999999999999999999999886554
No 184
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=92.87 E-value=0.081 Score=59.95 Aligned_cols=63 Identities=21% Similarity=0.236 Sum_probs=53.6
Q ss_pred EEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec---CC-----C-------CCCEEEEeecChhHHHHHHHHhCCC
Q 002280 551 VAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN---ED-----H-------EEPCAFIEYVDQLVTPKAIAGLNGL 613 (943)
Q Consensus 551 ~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d---~~-----~-------skG~aFVeF~~~e~A~kAl~~LnG~ 613 (943)
.+|.+-|||.+-.-+.|.+||+.+|.|+.|+|... .. . .+-+|||+|...+.|.+|...|+..
T Consensus 232 rtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 232 RTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 39999999999999999999999999999999765 11 1 1458999999999999999988643
No 185
>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]
Probab=92.40 E-value=0.15 Score=59.60 Aligned_cols=12 Identities=17% Similarity=0.285 Sum_probs=6.4
Q ss_pred HHHHhcCCCCeE
Q 002280 684 VRLECARFGSVK 695 (943)
Q Consensus 684 lre~fskFG~V~ 695 (943)
|+++..+||.=+
T Consensus 520 LRevLKKyG~nv 531 (752)
T KOG0670|consen 520 LREVLKKYGRNV 531 (752)
T ss_pred HHHHHHHhCccc
Confidence 455556666433
No 186
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=92.11 E-value=0.19 Score=60.01 Aligned_cols=69 Identities=16% Similarity=0.060 Sum_probs=54.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccccc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr 538 (943)
-++.-++||||+-..+..+-++.+++.||.+..+ .. -.|||++|..+.-+-.|+. ++-..+.|+
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~------------kr---~~fgf~~f~~~~~~~ra~r~~t~~~~~~~ 101 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSW------------KR---DKFGFCEFLKHIGDLRASRLLTELNIDDQ 101 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhh------------hh---hhhcccchhhHHHHHHHHHHhcccCCCcc
Confidence 3456699999999999999999999888743221 11 1199999999999999999 777888888
Q ss_pred ccccc
Q 002280 539 ILKIK 543 (943)
Q Consensus 539 ~LkV~ 543 (943)
.+.+.
T Consensus 102 kl~~~ 106 (668)
T KOG2253|consen 102 KLIEN 106 (668)
T ss_pred hhhcc
Confidence 77655
No 187
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=91.49 E-value=0.27 Score=57.90 Aligned_cols=65 Identities=20% Similarity=0.265 Sum_probs=54.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSF 535 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l 535 (943)
.+.++.|||.||---+|.-+|+++|..-| | .|...++.+-+..|||.|.+.++|..-.. |+|+.+
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtg---g--------~Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV~W 506 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTG---G--------NVEEFWMDKIKSHCYVSYSSVEEAAATREALHNVQW 506 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhcc---C--------chHHHHHHHhhcceeEecccHHHHHHHHHHHhcccc
Confidence 45678999999999999999999996433 1 45556777789999999999999999998 998654
No 188
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=90.94 E-value=0.16 Score=59.68 Aligned_cols=70 Identities=11% Similarity=0.199 Sum_probs=56.7
Q ss_pred EEEEecCCCCCCHHHHHHHHhh-cCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCcc---CCeEEEEEEc
Q 002280 552 AIFIGGISRTLSSKMVMEIVCA-FGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKV---GGQVLTAVQA 625 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~-fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~---~gr~L~V~~A 625 (943)
.|+|.||--.+|.-+|+.++.. .|.|..++|.+ -+..|||.|.+.++|.....+|||..+ +++-|.|.|+
T Consensus 446 vlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDk----IKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~ 519 (718)
T KOG2416|consen 446 VLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDK----IKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFV 519 (718)
T ss_pred eEeeecccccchHHHHHHHHhhccCchHHHHHHH----hhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeec
Confidence 8999999999999999999995 56666663322 367899999999999999999999775 4556666654
No 189
>PF08648 DUF1777: Protein of unknown function (DUF1777); InterPro: IPR013957 This entry shows eukaryotic proteins of unknown function. Some of the proteins are putative nucleic acid binding proteins.
Probab=88.77 E-value=0.55 Score=48.53 Aligned_cols=8 Identities=13% Similarity=0.484 Sum_probs=3.5
Q ss_pred HHHHHHHh
Q 002280 479 ALMEFLNN 486 (943)
Q Consensus 479 dL~elF~~ 486 (943)
+.++|++-
T Consensus 161 ~yRQYMNR 168 (180)
T PF08648_consen 161 KYRQYMNR 168 (180)
T ss_pred HHHHHHhh
Confidence 34444444
No 190
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=88.58 E-value=1.9 Score=36.83 Aligned_cols=52 Identities=19% Similarity=0.385 Sum_probs=42.8
Q ss_pred EEEEecCCCCCCHHHHHHHHhhc----CCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHh
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAF----GPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGL 610 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~f----G~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~L 610 (943)
+|+|.|+.. ++.++|+.+|..| ++ ..|.++.| ..|-|.|.+.+.|.+||.+|
T Consensus 7 avhirGvd~-lsT~dI~~y~~~y~~~~~~-~~IEWIdD-----tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 7 AVHIRGVDE-LSTDDIKAYFSEYFDEEGP-FRIEWIDD-----TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eEEEEcCCC-CCHHHHHHHHHHhcccCCC-ceEEEecC-----CcEEEEECCHHHHHHHHHcC
Confidence 789999854 7888999999999 54 46777766 36889999999999999865
No 191
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=87.42 E-value=2.7 Score=41.92 Aligned_cols=61 Identities=13% Similarity=0.166 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhcCCCCeEEEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCceEEEEecc
Q 002280 677 VEEVLEDVRLECARFGSVKSVNVVKYGDSNISTIQACEGNENTASAGVGQNLTNDETNEKGERLEEVTD 745 (943)
Q Consensus 677 ~~ei~eDlre~fskFG~V~~V~I~r~~~g~~~G~~FVeF~~~e~A~~Ai~~LnGr~~~~k~~~v~~~~~ 745 (943)
-..+..+|-+.|..||+|.-|++... . -+|+|.+-+.|.+| ..|+|.+++++++++.....
T Consensus 46 dd~l~~~ll~~~~~~GevvLvRfv~~---~----mwVTF~dg~sALaa-ls~dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 46 DDNLMDELLQKFAQYGEVVLVRFVGD---T----MWVTFRDGQSALAA-LSLDGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp -HHHHHHHHHHHHCCS-ECEEEEETT---C----EEEEESSCHHHHHH-HHGCCSEETTEEEEEEE---
T ss_pred CHHHHHHHHHHHHhCCceEEEEEeCC---e----EEEEECccHHHHHH-HccCCcEECCEEEEEEeCCc
Confidence 34566778889999999988877663 2 37999999999777 56899999999999977653
No 192
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=87.19 E-value=2.8 Score=39.99 Aligned_cols=65 Identities=11% Similarity=0.099 Sum_probs=51.7
Q ss_pred EEEEecCCCCCCHHHHHHHHhhc-CCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAF-GPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVG 616 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~f-G~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~ 616 (943)
.+.+...|..++.++|..+.+.+ ..|..++|+++...++-.+.+.|.+...|..-...+||..|.
T Consensus 15 ~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 15 LCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred EEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 34445556666677777777766 456778999987778889999999999999999999999875
No 193
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=87.07 E-value=2.2 Score=38.50 Aligned_cols=53 Identities=9% Similarity=0.253 Sum_probs=40.3
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLN 611 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~Ln 611 (943)
..+|+ +|..+...||.++|+.||.|. |.++. -..|||...+.+.|..|+..+.
T Consensus 11 VFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~-----dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 11 VFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIN-----DTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp EEEEE---TT--HHHHHHHCCCCCCEE-EEEEC-----TTEEEEEECCCHHHHHHHHHHT
T ss_pred EEEEe-CchHhhhhhHHHHhccCCcEE-EEEEc-----CCcEEEEeecHHHHHHHHHHhc
Confidence 44555 999999999999999999984 44444 4689999999999999998875
No 194
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=85.60 E-value=2 Score=42.36 Aligned_cols=67 Identities=16% Similarity=0.347 Sum_probs=50.5
Q ss_pred EEEEecCCCCC----CHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEE
Q 002280 552 AIFIGGISRTL----SSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQ 624 (943)
Q Consensus 552 ~LfV~NLp~~~----teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~ 624 (943)
+|.|.=|..++ +...|...++.||+|.+|.+. ++-.|.|.|.+..+|-+|+.+++. ...|..+.+.+
T Consensus 88 TIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-----GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsW 158 (166)
T PF15023_consen 88 TIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-----GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSW 158 (166)
T ss_pred eEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-----CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEeec
Confidence 77776554443 334566778899999998753 566899999999999999999876 45666666654
No 195
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=82.14 E-value=3.8 Score=42.63 Aligned_cols=61 Identities=11% Similarity=0.064 Sum_probs=46.4
Q ss_pred CHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhC--CCccCCeEEEEEEccc
Q 002280 563 SSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLN--GLKVGGQVLTAVQAVL 627 (943)
Q Consensus 563 teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~Ln--G~~~~gr~L~V~~A~~ 627 (943)
..+.|+++|..|+.+..+.+++ +-+-+.|.|.+.+.|..|...|+ +..|.|..|+|.++.+
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~----sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLK----SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEET----TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hHHHHHHHHHhcCCceEEEEcC----CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 3478999999999998887665 46778999999999999999999 9999999999998844
No 196
>KOG2548 consensus SWAP mRNA splicing regulator [RNA processing and modification]
Probab=81.97 E-value=0.43 Score=55.38 Aligned_cols=20 Identities=10% Similarity=-0.066 Sum_probs=11.1
Q ss_pred cCCCCCCCHHHHHHHHHhhh
Q 002280 469 ENLPLSASEKALMEFLNNFL 488 (943)
Q Consensus 469 gNLP~~vTEedL~elF~~~G 488 (943)
||--+.+|...+...|-+|.
T Consensus 555 G~~r~klt~~~~lk~rmq~~ 574 (653)
T KOG2548|consen 555 GNSRPKLTFFECLKSRMQFF 574 (653)
T ss_pred CCCCCcccHHHHHHHHHHHH
Confidence 55556667655555554443
No 197
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=81.57 E-value=3.4 Score=47.67 Aligned_cols=68 Identities=12% Similarity=0.182 Sum_probs=60.5
Q ss_pred eEEEEEecCCCCCCHHHHHHHHhhc-CCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCC
Q 002280 550 EVAIFIGGISRTLSSKMVMEIVCAF-GPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGG 617 (943)
Q Consensus 550 ~~~LfV~NLp~~~teedL~e~Fs~f-G~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~g 617 (943)
...|+|-.+|..++..||..|+..| -.|..|+|+++...++-.++|.|.+.++|..-...+||..|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 3489999999999999999999886 4688899999877788899999999999999999999998853
No 198
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=79.73 E-value=0.75 Score=51.23 Aligned_cols=75 Identities=16% Similarity=0.333 Sum_probs=57.7
Q ss_pred EEEEecCCCCCCHHHHH---HHHhhcCCeeEEEEEecC--CCC---CCEEEEeecChhHHHHHHHHhCCCccCCeEEEEE
Q 002280 552 AIFIGGISRTLSSKMVM---EIVCAFGPLKAYHFEVNE--DHE---EPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAV 623 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~---e~Fs~fG~I~~v~l~~d~--~~s---kG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~ 623 (943)
-+||-+|+..+..+.+. +.|.+||.|..|.+..++ ..+ .--+||+|...++|..||...+|+.+.|+.|++.
T Consensus 79 lvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka~ 158 (327)
T KOG2068|consen 79 LVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKAS 158 (327)
T ss_pred hhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHHh
Confidence 46677788776665554 588899999988876654 111 2248999999999999999999999999998776
Q ss_pred Ecc
Q 002280 624 QAV 626 (943)
Q Consensus 624 ~A~ 626 (943)
+..
T Consensus 159 ~gt 161 (327)
T KOG2068|consen 159 LGT 161 (327)
T ss_pred hCC
Confidence 553
No 199
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=79.59 E-value=13 Score=44.03 Aligned_cols=96 Identities=13% Similarity=0.096 Sum_probs=65.9
Q ss_pred HHHHHHHHH-ccCCccccccccccCCccceeEEEEEecCCCCCCHHHHHHHHhh--cCCeeEEEEEecCCCCCCEEEEee
Q 002280 521 AEDASAALC-CDGCSFSGSILKIKRPKEFVEVAIFIGGISRTLSSKMVMEIVCA--FGPLKAYHFEVNEDHEEPCAFIEY 597 (943)
Q Consensus 521 ~edA~~Al~-LnG~~l~Gr~LkV~rp~d~~~~~LfV~NLp~~~teedL~e~Fs~--fG~I~~v~l~~d~~~skG~aFVeF 597 (943)
.+-...+|. ..++.+..+-++|+..... + .|.|.-||..+-.|+|+.||.. +-++.+|.+..+ .-=||+|
T Consensus 147 vdLI~Evlresp~VqvDekgekVrp~~kR-c-IvilREIpettp~e~Vk~lf~~encPk~iscefa~N-----~nWyITf 219 (684)
T KOG2591|consen 147 VDLIVEVLRESPNVQVDEKGEKVRPNHKR-C-IVILREIPETTPIEVVKALFKGENCPKVISCEFAHN-----DNWYITF 219 (684)
T ss_pred hHHHHHHHhcCCCceeccCccccccCcce-e-EEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec-----CceEEEe
Confidence 333444555 6677777777777643321 1 5677999999999999999976 456667766432 2458999
Q ss_pred cChhHHHHHHHHhCC--CccCCeEEEEE
Q 002280 598 VDQLVTPKAIAGLNG--LKVGGQVLTAV 623 (943)
Q Consensus 598 ~~~e~A~kAl~~LnG--~~~~gr~L~V~ 623 (943)
++..+|+.|...|.- ..|.|++|.++
T Consensus 220 esd~DAQqAykylreevk~fqgKpImAR 247 (684)
T KOG2591|consen 220 ESDTDAQQAYKYLREEVKTFQGKPIMAR 247 (684)
T ss_pred ecchhHHHHHHHHHHHHHhhcCcchhhh
Confidence 999999999977643 23556655443
No 200
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=79.04 E-value=2.5 Score=43.70 Aligned_cols=64 Identities=9% Similarity=0.090 Sum_probs=45.0
Q ss_pred EEEEecCCCCCCHHHHHHHHhh-cCCe---eEEEEEecC----CCCCCEEEEeecChhHHHHHHHHhCCCcc
Q 002280 552 AIFIGGISRTLSSKMVMEIVCA-FGPL---KAYHFEVNE----DHEEPCAFIEYVDQLVTPKAIAGLNGLKV 615 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~-fG~I---~~v~l~~d~----~~skG~aFVeF~~~e~A~kAl~~LnG~~~ 615 (943)
+|.|.+||+.+|++++.+.++. ++.. ..+.-.... ...-.-|||.|.+.+++..-...++|..|
T Consensus 9 KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F 80 (176)
T PF03467_consen 9 KVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVF 80 (176)
T ss_dssp EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEE
T ss_pred eEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEE
Confidence 8999999999999999887776 5555 233211221 12245799999999999999999999877
No 201
>KOG3263 consensus Nucleic acid binding protein [General function prediction only]
Probab=77.46 E-value=0.66 Score=46.64 Aligned_cols=8 Identities=88% Similarity=1.107 Sum_probs=3.1
Q ss_pred ccCCCCcc
Q 002280 287 RRSRSRER 294 (943)
Q Consensus 287 rRSRSRdR 294 (943)
.|||+++|
T Consensus 65 sRsR~reR 72 (196)
T KOG3263|consen 65 SRSRSRER 72 (196)
T ss_pred cccccccc
Confidence 33443333
No 202
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=77.37 E-value=2.6 Score=51.95 Aligned_cols=72 Identities=14% Similarity=0.120 Sum_probs=61.9
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCcc--CCeEEEEEEccc
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKV--GGQVLTAVQAVL 627 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~--~gr~L~V~~A~~ 627 (943)
+.++.|.+..++.--|..+|++||.|.+.+.+++ -..|.|+|...+.|..|+.+|+|+.+ -|-+.+|..|.+
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~----~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD----LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccc----ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 6667788888899999999999999999887665 45899999999999999999999875 577788887754
No 203
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=77.24 E-value=0.87 Score=47.04 Aligned_cols=75 Identities=19% Similarity=0.197 Sum_probs=41.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHh-hhhccCcccccCCcceeeeeeec--CCCeeeEEeCCHHHHHHHHH-ccCCcccc
Q 002280 462 PMRRLCVENLPLSASEKALMEFLNN-FLLSSGVQHVHGSLPCIGCVIQR--EKGQAFVEFLTAEDASAALC-CDGCSFSG 537 (943)
Q Consensus 462 ~~rtLfVgNLP~~vTEedL~elF~~-~G~~~g~~~i~~~~~v~~~~~~~--skGyAFVeF~s~edA~~Al~-LnG~~l~G 537 (943)
...+|.|.+||+++||+++.+.+.. ++.......+.+ ........ .-.-|||.|.+.+++...+. ++|..|.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g---~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQG---KYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEE---EES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEec---CCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 3459999999999999998886554 221100000000 00000001 12249999999999998888 99987755
Q ss_pred cc
Q 002280 538 SI 539 (943)
Q Consensus 538 r~ 539 (943)
..
T Consensus 83 ~k 84 (176)
T PF03467_consen 83 SK 84 (176)
T ss_dssp TT
T ss_pred CC
Confidence 44
No 204
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=77.03 E-value=2.5 Score=38.65 Aligned_cols=58 Identities=16% Similarity=0.291 Sum_probs=42.2
Q ss_pred eeEEeCCHHHHHHHHHccC--Ccccccccccc--CC-----ccce------eEEEEEecCCCCCCHHHHHHHH
Q 002280 514 AFVEFLTAEDASAALCCDG--CSFSGSILKIK--RP-----KEFV------EVAIFIGGISRTLSSKMVMEIV 571 (943)
Q Consensus 514 AFVeF~s~edA~~Al~LnG--~~l~Gr~LkV~--rp-----~d~~------~~~LfV~NLp~~~teedL~e~F 571 (943)
|+|+|.+..-|+..+.+.. ..+.+..+.|. +. ..+. ..+|.|.|||..+++++|++.+
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeE
Confidence 7899999999999998444 45666665554 11 1111 1299999999999999999854
No 205
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=76.97 E-value=3.7 Score=40.61 Aligned_cols=46 Identities=13% Similarity=0.143 Sum_probs=37.1
Q ss_pred HHHHHHhcCCCCeEEEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCCcc
Q 002280 682 EDVRLECARFGSVKSVNVVKYGDSNISTIQACEGNENTASAGVGQNLTNDET 733 (943)
Q Consensus 682 eDlre~fskFG~V~~V~I~r~~~g~~~G~~FVeF~~~e~A~~Ai~~LnGr~~ 733 (943)
..|-...+.||.|.+|.+.- +..|.|.|.+..+|=+|+.++.-+-.
T Consensus 105 ~sV~~~Ls~fGpI~SVT~cG------rqsavVvF~d~~SAC~Av~Af~s~~p 150 (166)
T PF15023_consen 105 KSVIQRLSVFGPIQSVTLCG------RQSAVVVFKDITSACKAVSAFQSRAP 150 (166)
T ss_pred HHHHHHHHhcCCcceeeecC------CceEEEEehhhHHHHHHHHhhcCCCC
Confidence 34556678999999999865 34578999999999999999876443
No 206
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=74.66 E-value=9.8 Score=36.33 Aligned_cols=68 Identities=15% Similarity=0.127 Sum_probs=40.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCe-eeEEeCCHHHHHHHHH-ccCCcccc
Q 002280 462 PMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQ-AFVEFLTAEDASAALC-CDGCSFSG 537 (943)
Q Consensus 462 ~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGy-AFVeF~s~edA~~Al~-LnG~~l~G 537 (943)
....+.+...|..++-+.|..+...+.. .+. .+.-+..+....| +.+.|.+.+.|..... +||..|+.
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~-----~i~---~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFRE-----DIE---HIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccc-----cEE---EEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 3344555555555555666555444332 111 1122233443334 8999999999999999 99988743
No 207
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=74.46 E-value=56 Score=36.27 Aligned_cols=187 Identities=11% Similarity=0.120 Sum_probs=107.6
Q ss_pred ceeEEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCC---------CCCCEEEEeecChhHHHH----HHHHhCC--
Q 002280 548 FVEVAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNED---------HEEPCAFIEYVDQLVTPK----AIAGLNG-- 612 (943)
Q Consensus 548 ~~~~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~---------~skG~aFVeF~~~e~A~k----Al~~LnG-- 612 (943)
|....|...|+...++--.+..-|-+||+|++|.++.+.+ ...-.+.+-|-+.+.|.. .++.|+.
T Consensus 13 YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK 92 (309)
T PF10567_consen 13 YRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFK 92 (309)
T ss_pred ceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHH
Confidence 4445788889999999999999999999999999987641 224577888988877653 4444543
Q ss_pred CccCCeEEEEEEcccCCCc--CCCCCCCCCCCCCCCc---CCCCCCCceEEEeccCCCcCCCCCCChHHHHHHHHHHHHH
Q 002280 613 LKVGGQVLTAVQAVLDGSI--MDNSGNPPFHGIPKHA---LPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLE 687 (943)
Q Consensus 613 ~~~~gr~L~V~~A~~~~~~--~~~~~~~~~~~ip~~~---~~~~~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~ 687 (943)
..+....|.+.+..-+-.. ........++-..... .......|+.|.|.=- ++.. .+..+. +-| ..
T Consensus 93 ~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~-~~~~----~~dl~~---~kL-~f 163 (309)
T PF10567_consen 93 TKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFK-DPVD----KDDLIE---KKL-PF 163 (309)
T ss_pred HhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEec-Cccc----hhHHHH---Hhh-hh
Confidence 2355666777665321111 0011111110000000 0112456777765421 1111 111111 112 11
Q ss_pred hcCCC----CeEEEEEecC---CCCCcceeEEEEeCCHHHHHHHHHHhC--CCccC-CCceEEEEe
Q 002280 688 CARFG----SVKSVNVVKY---GDSNISTIQACEGNENTASAGVGQNLT--NDETN-EKGERLEEV 743 (943)
Q Consensus 688 fskFG----~V~~V~I~r~---~~g~~~G~~FVeF~~~e~A~~Ai~~Ln--Gr~~~-~k~~~v~~~ 743 (943)
...=+ -|++|.|+.- ...+...|+.++|-++.-|...+.-|. +...+ .+|.-|+..
T Consensus 164 L~~~~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~~~~~~Iskc~fVs~~ 229 (309)
T PF10567_consen 164 LKNSNNKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSNSKKLGISKCFFVSVQ 229 (309)
T ss_pred hccCCCceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhcccccCcceEEEEecc
Confidence 12223 2778887643 344566699999999999999888775 66666 667666544
No 208
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=74.33 E-value=4.4 Score=42.20 Aligned_cols=59 Identities=12% Similarity=-0.044 Sum_probs=44.7
Q ss_pred HHHHHHHHhcCCCCeEEEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhC--CCccCCCceEEEEe
Q 002280 680 VLEDVRLECARFGSVKSVNVVKYGDSNISTIQACEGNENTASAGVGQNLT--NDETNEKGERLEEV 743 (943)
Q Consensus 680 i~eDlre~fskFG~V~~V~I~r~~~g~~~G~~FVeF~~~e~A~~Ai~~Ln--Gr~~~~k~~~v~~~ 743 (943)
++..|+.+|..|+.+..+.+.+. .+-+.|.|.+.+.|..|...|+ +..|.+..+.+-..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s-----FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~ 68 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS-----FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFG 68 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT-----TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE--
T ss_pred hHHHHHHHHHhcCCceEEEEcCC-----CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEc
Confidence 34678899999999999988873 3456799999999999999999 99999988777544
No 209
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=73.98 E-value=2.3 Score=51.28 Aligned_cols=66 Identities=21% Similarity=0.323 Sum_probs=59.0
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEE
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQ 624 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~ 624 (943)
++||+|+...+..+-++.+...+|.|.++.... |||++|..+..+..|+..|+-..++|..+.+..
T Consensus 42 ~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~ 107 (668)
T KOG2253|consen 42 TVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENV 107 (668)
T ss_pred eeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-------hcccchhhHHHHHHHHHHhcccCCCcchhhccc
Confidence 999999999999999999999999988765432 999999999999999999999999998887754
No 210
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=71.55 E-value=21 Score=30.58 Aligned_cols=56 Identities=18% Similarity=0.221 Sum_probs=39.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH
Q 002280 463 MRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC 529 (943)
Q Consensus 463 ~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~ 529 (943)
+..|+|.|+ -+++.++|+.+|..|....+ +..--++. -.-|-|.|.+.+.|.+||.
T Consensus 5 peavhirGv-d~lsT~dI~~y~~~y~~~~~--------~~~IEWId--DtScNvvf~d~~~A~~AL~ 60 (62)
T PF10309_consen 5 PEAVHIRGV-DELSTDDIKAYFSEYFDEEG--------PFRIEWID--DTSCNVVFKDEETAARALV 60 (62)
T ss_pred eceEEEEcC-CCCCHHHHHHHHHHhcccCC--------CceEEEec--CCcEEEEECCHHHHHHHHH
Confidence 457999998 55889999999998832111 11111222 2347899999999999996
No 211
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=70.14 E-value=12 Score=43.37 Aligned_cols=67 Identities=16% Similarity=0.264 Sum_probs=51.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCe-eeEEeCCHHHHHHHHH-ccCCcccc
Q 002280 463 MRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQ-AFVEFLTAEDASAALC-CDGCSFSG 537 (943)
Q Consensus 463 ~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGy-AFVeF~s~edA~~Al~-LnG~~l~G 537 (943)
...|+|-.+|..+|-.||..|+-.|... |.. |.-+..+....| ++|.|.+.++|....+ +||..|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~-----I~~---irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQ-----ISD---IRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhh-----hhe---eEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 7789999999999999999999766532 221 122224444445 8999999999999999 99988854
No 212
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=69.74 E-value=7 Score=46.23 Aligned_cols=68 Identities=13% Similarity=0.237 Sum_probs=52.1
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccC--Ccccccc
Q 002280 463 MRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDG--CSFSGSI 539 (943)
Q Consensus 463 ~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG--~~l~Gr~ 539 (943)
-+.|++.-||..+-+++|+.||..- .+..+++|..+.+.+ -||+|.+..||+.|.. |.- ..|.|++
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~e----------ncPk~iscefa~N~n-WyITfesd~DAQqAykylreevk~fqgKp 243 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGE----------NCPKVISCEFAHNDN-WYITFESDTDAQQAYKYLREEVKTFQGKP 243 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccC----------CCCCceeeeeeecCc-eEEEeecchhHHHHHHHHHHHHHhhcCcc
Confidence 3568899999999999999999431 123678888876554 5999999999999987 544 4677776
Q ss_pred cc
Q 002280 540 LK 541 (943)
Q Consensus 540 Lk 541 (943)
|.
T Consensus 244 Im 245 (684)
T KOG2591|consen 244 IM 245 (684)
T ss_pred hh
Confidence 54
No 213
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=69.13 E-value=6.3 Score=43.42 Aligned_cols=62 Identities=13% Similarity=0.228 Sum_probs=48.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHHccCCcccccc
Q 002280 465 RLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSI 539 (943)
Q Consensus 465 tLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~LnG~~l~Gr~ 539 (943)
=|-|-++|+.-+ ..|..+|..|| .|++..+.....+-+|-|.+.-+|.+||..||+.|.|..
T Consensus 199 WVTVfGFppg~~-s~vL~~F~~cG------------~Vvkhv~~~ngNwMhirYssr~~A~KALskng~ii~g~v 260 (350)
T KOG4285|consen 199 WVTVFGFPPGQV-SIVLNLFSRCG------------EVVKHVTPSNGNWMHIRYSSRTHAQKALSKNGTIIDGDV 260 (350)
T ss_pred eEEEeccCccch-hHHHHHHHhhC------------eeeeeecCCCCceEEEEecchhHHHHhhhhcCeeeccce
Confidence 355667877654 45677888887 456666776667899999999999999999999998744
No 214
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=66.29 E-value=2.8 Score=46.83 Aligned_cols=58 Identities=7% Similarity=-0.018 Sum_probs=46.4
Q ss_pred HHHhcCCCCeEEEEEecCCC--CC--cceeEEEEeCCHHHHHHHHHHhCCCccCCCceEEEE
Q 002280 685 RLECARFGSVKSVNVVKYGD--SN--ISTIQACEGNENTASAGVGQNLTNDETNEKGERLEE 742 (943)
Q Consensus 685 re~fskFG~V~~V~I~r~~~--g~--~~G~~FVeF~~~e~A~~Ai~~LnGr~~~~k~~~v~~ 742 (943)
.+.|.+||.|.+|.+.++.. .. ..-.+||+|...++|..||+..+|....++.++...
T Consensus 98 ~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka~~ 159 (327)
T KOG2068|consen 98 TEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKASL 159 (327)
T ss_pred cccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHHhh
Confidence 46789999999999988652 11 112489999999999999999999999998866433
No 215
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=66.05 E-value=2.7 Score=48.67 Aligned_cols=75 Identities=17% Similarity=0.188 Sum_probs=59.1
Q ss_pred CCCCeEEEcCCCCCC-CHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHHccCCcccccc
Q 002280 461 RPMRRLCVENLPLSA-SEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSI 539 (943)
Q Consensus 461 ~~~rtLfVgNLP~~v-TEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~LnG~~l~Gr~ 539 (943)
.+.+.|-+.-.|+.+ |-.+|...|.+||. |.+|.++.+--.|.|+|.+..+|-.|....+..|+++.
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~------------i~n~qv~~~~~~a~vTF~t~aeag~a~~s~~avlnnr~ 437 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGE------------IENIQVDYSSLHAVVTFKTRAEAGEAYASHGAVLNNRF 437 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCc------------cccccccCchhhheeeeeccccccchhccccceecCce
Confidence 345566666677665 57789999988884 45566666656799999999999999999999999999
Q ss_pred ccccCCcc
Q 002280 540 LKIKRPKE 547 (943)
Q Consensus 540 LkV~rp~d 547 (943)
|+|.|-+.
T Consensus 438 iKl~whnp 445 (526)
T KOG2135|consen 438 IKLFWHNP 445 (526)
T ss_pred eEEEEecC
Confidence 98886554
No 216
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=65.44 E-value=14 Score=33.46 Aligned_cols=41 Identities=15% Similarity=0.087 Sum_probs=34.2
Q ss_pred HHHHHHhcCCCCeEEEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhC
Q 002280 682 EDVRLECARFGSVKSVNVVKYGDSNISTIQACEGNENTASAGVGQNLT 729 (943)
Q Consensus 682 eDlre~fskFG~V~~V~I~r~~~g~~~G~~FVeF~~~e~A~~Ai~~Ln 729 (943)
.||.++|++||.|.---|.. +.|||...+.+.|..|+..+.
T Consensus 23 ~DI~qlFspfG~I~VsWi~d-------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 23 SDIYQLFSPFGQIYVSWIND-------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp HHHHHHCCCCCCEEEEEECT-------TEEEEEECCCHHHHHHHHHHT
T ss_pred hhHHHHhccCCcEEEEEEcC-------CcEEEEeecHHHHHHHHHHhc
Confidence 68999999999987444432 358999999999999999996
No 217
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=65.30 E-value=2.9 Score=51.26 Aligned_cols=7 Identities=29% Similarity=0.169 Sum_probs=3.3
Q ss_pred EEEEeCC
Q 002280 711 QACEGNE 717 (943)
Q Consensus 711 ~FVeF~~ 717 (943)
.||.|..
T Consensus 972 ~~v~~d~ 978 (1194)
T KOG4246|consen 972 EAVVIDE 978 (1194)
T ss_pred ceeeecc
Confidence 3455543
No 218
>KOG1049 consensus Polyadenylation factor I complex, subunit FIP1 [RNA processing and modification]
Probab=64.08 E-value=4 Score=48.31 Aligned_cols=8 Identities=38% Similarity=0.526 Sum_probs=4.2
Q ss_pred cccccccC
Q 002280 70 VSDDHKSG 77 (943)
Q Consensus 70 ~~~~~~~~ 77 (943)
|||||-=+
T Consensus 175 iSDYFNYG 182 (538)
T KOG1049|consen 175 ISDYFNYG 182 (538)
T ss_pred chhhhccc
Confidence 45555544
No 219
>KOG3869 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.51 E-value=7.5 Score=44.55 Aligned_cols=10 Identities=20% Similarity=0.036 Sum_probs=4.6
Q ss_pred ccccCCCCCc
Q 002280 56 MDVSNIPGDC 65 (943)
Q Consensus 56 ~~~~~~~~~~ 65 (943)
..+++++-++
T Consensus 58 e~~g~~~k~~ 67 (450)
T KOG3869|consen 58 EAVGNSKKNE 67 (450)
T ss_pred HHhccccccc
Confidence 3444455444
No 220
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=63.03 E-value=19 Score=31.53 Aligned_cols=59 Identities=20% Similarity=0.363 Sum_probs=34.8
Q ss_pred CCCCHHHHHHHHhhcCCe-----eEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEc
Q 002280 560 RTLSSKMVMEIVCAFGPL-----KAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQA 625 (943)
Q Consensus 560 ~~~teedL~e~Fs~fG~I-----~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A 625 (943)
..++..+|..++...+.| -.|.|. ..|+||+-. .+.|..++..|++..+.|+.|.|..|
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~------~~~S~vev~-~~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIF------DNFSFVEVP-EEVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-------SS-EEEEE--TT-HHHHHHHHTT--SSS----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEe------eeEEEEEEC-HHHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 356778888888776544 346653 458999865 45788999999999999999999864
No 221
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.12 E-value=19 Score=43.09 Aligned_cols=82 Identities=18% Similarity=0.195 Sum_probs=58.5
Q ss_pred CCCCCCceEEEeccC-CCcCCCCCCChHHHHHHHHHHHHHhcCC----CCeEEEEEecCCC-----------CC------
Q 002280 649 PLLKKPTEVLKLKNV-FNPEGFSSLSELEVEEVLEDVRLECARF----GSVKSVNVVKYGD-----------SN------ 706 (943)
Q Consensus 649 ~~~~~ps~vL~L~Nl-v~~~~l~~i~~~~~~ei~eDlre~fskF----G~V~~V~I~r~~~-----------g~------ 706 (943)
+..+.+|+-|.|.|| ++... .+||..+|+.| |.|.+|.|....- |.
T Consensus 168 ~~~~~~T~RLAVvNMDWd~v~------------AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~ 235 (650)
T KOG2318|consen 168 PVLGEETKRLAVVNMDWDRVK------------AKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFK 235 (650)
T ss_pred cccccccceeeEecccccccc------------HHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhcc
Confidence 344678999999998 33222 14555556544 5999999975321 11
Q ss_pred -------------------------------cceeEEEEeCCHHHHHHHHHHhCCCccCCCceEEEE
Q 002280 707 -------------------------------ISTIQACEGNENTASAGVGQNLTNDETNEKGERLEE 742 (943)
Q Consensus 707 -------------------------------~~G~~FVeF~~~e~A~~Ai~~LnGr~~~~k~~~v~~ 742 (943)
-+-||.|+|.+++.|.+......|.+|..-+..+-.
T Consensus 236 ~~e~~~~s~sD~ee~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DL 302 (650)
T KOG2318|consen 236 PVEEYKESESDDEEEEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDL 302 (650)
T ss_pred ccccCcccccchhhhhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeee
Confidence 123789999999999999999999999877776433
No 222
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=58.98 E-value=15 Score=40.68 Aligned_cols=69 Identities=16% Similarity=0.218 Sum_probs=50.7
Q ss_pred EEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeE-EEEEEccc
Q 002280 553 IFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQV-LTAVQAVL 627 (943)
Q Consensus 553 LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~-L~V~~A~~ 627 (943)
|-|-++|+.- -.-|..+|++||.|...... .+-.+-+|.|.+..+|.+||. -||+.|+|.. |-|..+..
T Consensus 200 VTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~----~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCtD 269 (350)
T KOG4285|consen 200 VTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTP----SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCTD 269 (350)
T ss_pred EEEeccCccc-hhHHHHHHHhhCeeeeeecC----CCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecCC
Confidence 4455666543 34678899999998765432 345599999999999999997 7899998764 55666544
No 223
>KOG3869 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.49 E-value=6.7 Score=44.96 Aligned_cols=6 Identities=83% Similarity=1.043 Sum_probs=2.3
Q ss_pred hhhhhh
Q 002280 128 TKLKED 133 (943)
Q Consensus 128 ~~~~~~ 133 (943)
.||+.+
T Consensus 129 kKlk~D 134 (450)
T KOG3869|consen 129 KKLKED 134 (450)
T ss_pred HHhhhC
Confidence 333333
No 224
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=56.69 E-value=6.5 Score=38.90 Aligned_cols=108 Identities=19% Similarity=0.117 Sum_probs=73.0
Q ss_pred eEEEcCCC--CCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHHccCCccccccccc
Q 002280 465 RLCVENLP--LSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSILKI 542 (943)
Q Consensus 465 tLfVgNLP--~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~LnG~~l~Gr~LkV 542 (943)
...||.+. ..++-..|...+...-...+ . ..+ .....++..+.|.+.+++..++......+.|..+.+
T Consensus 17 ~~lVg~~l~~~~~~~~~l~~~l~~~W~~~~--------~-~~i-~~l~~~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l 86 (153)
T PF14111_consen 17 LCLVGRVLSPKPISLSALEQELAKIWKLKG--------G-VKI-RDLGDNLFLFQFESEEDRQRVLKGGPWNFNGHFLIL 86 (153)
T ss_pred eEEEEEECCCCCCCHHHHHHHHHHHhCCCC--------c-EEE-EEeCCCeEEEEEEeccceeEEEecccccccccchhh
Confidence 44555553 24567777777755311111 1 111 122478999999999999999997777888888888
Q ss_pred cCCccce----------eEEEEEecCCCC-CCHHHHHHHHhhcCCeeEEEE
Q 002280 543 KRPKEFV----------EVAIFIGGISRT-LSSKMVMEIVCAFGPLKAYHF 582 (943)
Q Consensus 543 ~rp~d~~----------~~~LfV~NLp~~-~teedL~e~Fs~fG~I~~v~l 582 (943)
.+.+... +.-|.|.|||.. .+++-+..+.+.+|.+..+..
T Consensus 87 ~~W~~~~~~~~~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~ 137 (153)
T PF14111_consen 87 QRWSPDFNPSEVKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDE 137 (153)
T ss_pred hhhcccccccccceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEc
Confidence 8654211 114778899974 788889999999999987764
No 225
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=54.42 E-value=27 Score=43.55 Aligned_cols=73 Identities=18% Similarity=0.201 Sum_probs=59.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcc--c
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSF--S 536 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l--~ 536 (943)
.+...+.++.|.+-+.|-.-|..+|.+|| .|.+.++-+.-..|.|+|.+.+.|..|+. |.|+.+ .
T Consensus 295 ~plqp~~~~~nn~v~~tSssL~~l~s~yg------------~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs~~ 362 (1007)
T KOG4574|consen 295 FPLQPKQSLENNAVNLTSSSLATLCSDYG------------SVASAWTLRDLNMALVSFSSVESAILALDALQGKEVSVT 362 (1007)
T ss_pred ccCcchhhhhcccccchHHHHHHHHHhhc------------chhhheecccccchhhhhHHHHHHHHhhhhhcCCccccc
Confidence 34456788899999999999999999998 45666777777889999999999999999 999644 6
Q ss_pred cccccccC
Q 002280 537 GSILKIKR 544 (943)
Q Consensus 537 Gr~LkV~r 544 (943)
|-+.+|..
T Consensus 363 g~Ps~V~~ 370 (1007)
T KOG4574|consen 363 GAPSRVSF 370 (1007)
T ss_pred CCceeEEe
Confidence 76766663
No 226
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=49.44 E-value=8.3 Score=47.53 Aligned_cols=8 Identities=25% Similarity=0.443 Sum_probs=3.1
Q ss_pred CCCccccc
Q 002280 303 SLSPRAQK 310 (943)
Q Consensus 303 Sr~~R~rr 310 (943)
.++||+++
T Consensus 354 er~prRr~ 361 (1194)
T KOG4246|consen 354 ERIPRRRE 361 (1194)
T ss_pred hcchHhhh
Confidence 33344433
No 227
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=48.99 E-value=12 Score=43.67 Aligned_cols=72 Identities=8% Similarity=0.068 Sum_probs=55.2
Q ss_pred EEEecCCCC-CCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCC
Q 002280 553 IFIGGISRT-LSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDG 629 (943)
Q Consensus 553 LfV~NLp~~-~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~ 629 (943)
|.+.-.|+. -+.++|...|.+||.|..|.+-.. ---|.|+|.+..+|-.|.. .++..|.++.|+|.|-.+..
T Consensus 375 l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~----~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps~ 447 (526)
T KOG2135|consen 375 LALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS----SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPSP 447 (526)
T ss_pred hhhhccCCCCchHhhhhhhhhhcCccccccccCc----hhhheeeeeccccccchhc-cccceecCceeEEEEecCCc
Confidence 333334443 345889999999999999887432 3468999999999977775 88999999999999876643
No 228
>PF02956 TT_ORF1: TT viral orf 1; InterPro: IPR004219 Torque teno virus, isolated initially from a Japanese patient with hepatitis of unknown aetiology, has since been found to infect both healthy and diseased individuals and numerous prevalence studies have raised questions about its role in unexplained hepatitis. ORF1 is a large 750 residue protein.
Probab=47.21 E-value=14 Score=44.79 Aligned_cols=8 Identities=13% Similarity=0.222 Sum_probs=3.2
Q ss_pred HHHHHHhh
Q 002280 480 LMEFLNNF 487 (943)
Q Consensus 480 L~elF~~~ 487 (943)
|..|+.++
T Consensus 118 L~~Ly~e~ 125 (525)
T PF02956_consen 118 LQYLYDEH 125 (525)
T ss_pred HHHHHHHH
Confidence 33344443
No 229
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=43.02 E-value=52 Score=28.17 Aligned_cols=25 Identities=24% Similarity=0.469 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhcCCCCeEEEEEecC
Q 002280 678 EEVLEDVRLECARFGSVKSVNVVKY 702 (943)
Q Consensus 678 ~ei~eDlre~fskFG~V~~V~I~r~ 702 (943)
++|..+||+.|+..|+|.-+-|-..
T Consensus 5 e~i~~~iR~~fs~lG~I~vLYvn~~ 29 (62)
T PF15513_consen 5 EEITAEIRQFFSQLGEIAVLYVNPY 29 (62)
T ss_pred HHHHHHHHHHHHhcCcEEEEEEccc
Confidence 5678899999999999987776543
No 230
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=41.72 E-value=26 Score=30.32 Aligned_cols=30 Identities=7% Similarity=0.105 Sum_probs=27.7
Q ss_pred EEEEecCHHHHHHHHHHhhcCccCCceEEE
Q 002280 900 VFVEYMRAEASCMAAHSLHRRLFDDRIVAV 929 (943)
Q Consensus 900 v~v~f~~~~~a~~a~~~l~gr~f~~~~v~~ 929 (943)
.||-|.+...|..+..+.||+.|-+.+|..
T Consensus 36 fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 36 FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 899999999999999999999998888754
No 231
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=41.02 E-value=54 Score=28.68 Aligned_cols=62 Identities=18% Similarity=0.122 Sum_probs=33.0
Q ss_pred CCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccccccccccC
Q 002280 473 LSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSILKIKR 544 (943)
Q Consensus 473 ~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~LkV~r 544 (943)
..++..+|..+|...+.+.+ ..|-++.+ ...|+||+-... .|..++. |++..+.|++|.|..
T Consensus 11 dg~~~~~iv~~i~~~~gi~~-------~~IG~I~I--~~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~ 73 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPG-------RDIGRIDI--FDNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVER 73 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-G-------GGEEEEEE---SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE
T ss_pred cCCCHHHHHHHHHhccCCCH-------HhEEEEEE--eeeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEE
Confidence 46788899999966432111 13333333 367899988766 6777777 999999999998863
No 232
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.98 E-value=2.2e+02 Score=34.57 Aligned_cols=129 Identities=16% Similarity=0.132 Sum_probs=75.7
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccccc
Q 002280 461 RPMRRLCVENLPLS-ASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (943)
Q Consensus 461 ~~~rtLfVgNLP~~-vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr 538 (943)
..+++|-|-||.|. +...+|..+|+.|.+..| .|+.+.+..+. |- .. |.--.+.|-
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gG--------silSV~IYpSe------FG--------keRM~eEeV~GP 229 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGG--------SILSVKIYPSE------FG--------KERMKEEEVHGP 229 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCC--------ceeEEEechhh------hh--------HHHhhhhcccCC
Confidence 45789999999985 789999999999986544 45555553321 11 12 333345555
Q ss_pred cccccCCccceeEEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccC--
Q 002280 539 ILKIKRPKEFVEVAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVG-- 616 (943)
Q Consensus 539 ~LkV~rp~d~~~~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~-- 616 (943)
++.+-.|.+.....- ......++-.++-+..|+.- .+ .--||.|+|.+++.|.+.....+|+.|.
T Consensus 230 ~~el~~~~e~~~~s~----sD~ee~~~~~~~kLR~Yq~~-rL--------kYYyAVvecDsi~tA~~vYe~CDG~EfEsS 296 (650)
T KOG2318|consen 230 PKELFKPVEEYKESE----SDDEEEEDVDREKLRQYQLN-RL--------KYYYAVVECDSIETAKAVYEECDGIEFESS 296 (650)
T ss_pred hhhhccccccCcccc----cchhhhhhHHHHHHHHHHhh-hh--------eeEEEEEEecCchHHHHHHHhcCcceeccc
Confidence 555444333111000 01111112224444455311 11 1238999999999999999999999985
Q ss_pred CeEEEEEE
Q 002280 617 GQVLTAVQ 624 (943)
Q Consensus 617 gr~L~V~~ 624 (943)
+..|-+++
T Consensus 297 ~~~~DLRF 304 (650)
T KOG2318|consen 297 ANKLDLRF 304 (650)
T ss_pred cceeeeee
Confidence 45555554
No 233
>KOG2146 consensus Splicing coactivator SRm160/300, subunit SRm160 (contains PWI domain) [RNA processing and modification; General function prediction only]
Probab=38.93 E-value=2.1e+02 Score=31.69 Aligned_cols=10 Identities=40% Similarity=0.577 Sum_probs=5.1
Q ss_pred cccccccccc
Q 002280 43 KTKNLSENIK 52 (943)
Q Consensus 43 ~~~~~~~~~~ 52 (943)
|-|+|+...|
T Consensus 17 keKKLmkqmK 26 (354)
T KOG2146|consen 17 KEKKLMKQMK 26 (354)
T ss_pred HHHHHHHhcc
Confidence 3455555554
No 234
>PF15519 RBM39linker: linker between RRM2 and RRM3 domains in RBM39 protein; PDB: 3S6E_A 2LQ5_A.
Probab=38.17 E-value=14 Score=32.64 Aligned_cols=18 Identities=17% Similarity=0.071 Sum_probs=10.9
Q ss_pred cccccccccccccccccc
Q 002280 836 IQLEHMSEENKSSAKEDL 853 (943)
Q Consensus 836 i~~~~~~~~~~~~~~~~~ 853 (943)
+.+.|++++|||++.+|+
T Consensus 52 ~aS~C~lLkNMFDP~~Et 69 (73)
T PF15519_consen 52 IASRCFLLKNMFDPAEET 69 (73)
T ss_dssp ---SEEEEESSS-TTCGG
T ss_pred CCCceeeeecCCCccccc
Confidence 778898888888877743
No 235
>PF15519 RBM39linker: linker between RRM2 and RRM3 domains in RBM39 protein; PDB: 3S6E_A 2LQ5_A.
Probab=37.98 E-value=20 Score=31.68 Aligned_cols=17 Identities=29% Similarity=0.485 Sum_probs=12.2
Q ss_pred CCceEEEeccCCCcCCC
Q 002280 653 KPTEVLKLKNVFNPEGF 669 (943)
Q Consensus 653 ~ps~vL~L~Nlv~~~~l 669 (943)
.+|+|++|+|+|+|.+.
T Consensus 52 ~aS~C~lLkNMFDP~~E 68 (73)
T PF15519_consen 52 IASRCFLLKNMFDPAEE 68 (73)
T ss_dssp ---SEEEEESSS-TTCG
T ss_pred CCCceeeeecCCCcccc
Confidence 68999999999999886
No 236
>KOG1882 consensus Transcriptional regulator SNIP1, contains FHA domain [Signal transduction mechanisms]
Probab=37.77 E-value=23 Score=37.99 Aligned_cols=10 Identities=30% Similarity=0.325 Sum_probs=4.2
Q ss_pred CCEEEEeecC
Q 002280 590 EPCAFIEYVD 599 (943)
Q Consensus 590 kG~aFVeF~~ 599 (943)
+-.|.|+|..
T Consensus 216 KQHaviQyR~ 225 (293)
T KOG1882|consen 216 KQHAVIQYRL 225 (293)
T ss_pred ccceeeeeee
Confidence 3344444433
No 237
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=30.91 E-value=78 Score=30.53 Aligned_cols=51 Identities=18% Similarity=0.219 Sum_probs=29.8
Q ss_pred EEEEecCCCCC---------CHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHH
Q 002280 552 AIFIGGISRTL---------SSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVT 603 (943)
Q Consensus 552 ~LfV~NLp~~~---------teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A 603 (943)
++.|-|++... +.+.|.+.|+.|.+++ ++.+.+.....|+++|+|..--..
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~gh~g~aiv~F~~~w~G 69 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQGHTGFAIVEFNKDWSG 69 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETTEEEEEEEEE--SSHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCCCCcEEEEEEECCChHH
Confidence 67778886643 4578999999999986 444555556789999999775443
No 238
>KOG2146 consensus Splicing coactivator SRm160/300, subunit SRm160 (contains PWI domain) [RNA processing and modification; General function prediction only]
Probab=27.85 E-value=2e+02 Score=31.83 Aligned_cols=7 Identities=14% Similarity=0.349 Sum_probs=2.7
Q ss_pred ccccccc
Q 002280 66 TIENVSD 72 (943)
Q Consensus 66 ~~~~~~~ 72 (943)
|...|.|
T Consensus 49 Itkrvne 55 (354)
T KOG2146|consen 49 ITKRVNE 55 (354)
T ss_pred HHHHHHH
Confidence 3333433
No 239
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=27.15 E-value=2.7e+02 Score=24.14 Aligned_cols=55 Identities=5% Similarity=0.009 Sum_probs=42.0
Q ss_pred CCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEE
Q 002280 561 TLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTA 622 (943)
Q Consensus 561 ~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V 622 (943)
.++-++|+..+..|+-.. |..+ ..| -||.|.+..+|.++....+|..+.+..|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~~---I~~d---~tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWDR---IRDD---RTG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcce---EEec---CCE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 567789999999998543 2222 233 489999999999999999999887766543
No 240
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=25.99 E-value=1.3e+02 Score=31.24 Aligned_cols=43 Identities=9% Similarity=0.100 Sum_probs=33.0
Q ss_pred HHHHHHhcCCCCeEEEEEecCCCC--CcceeEEEEeCCHHHHHHHHH
Q 002280 682 EDVRLECARFGSVKSVNVVKYGDS--NISTIQACEGNENTASAGVGQ 726 (943)
Q Consensus 682 eDlre~fskFG~V~~V~I~r~~~g--~~~G~~FVeF~~~e~A~~Ai~ 726 (943)
++|.+.-+ |++..|..-+...+ ..+|..||+|.+.++|.+.+.
T Consensus 124 ~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~ 168 (205)
T KOG4213|consen 124 DDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDD 168 (205)
T ss_pred HHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhh
Confidence 56666655 99999998776544 567889999999999977544
No 241
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=25.66 E-value=1.4e+02 Score=32.97 Aligned_cols=46 Identities=11% Similarity=0.078 Sum_probs=35.8
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCe-eEEEEEecCCCCCCEEEEeecChh
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPL-KAYHFEVNEDHEEPCAFIEYVDQL 601 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I-~~v~l~~d~~~skG~aFVeF~~~e 601 (943)
-|+++||+.++--.||+..+.+-|.+ .++.+ ....|.||+.|-+..
T Consensus 332 di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw----kg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 332 DIKLTNLSRDIRVKDLKSELRKRECTPMSISW----KGHFGKCFLHFGNRK 378 (396)
T ss_pred ceeeccCccccchHHHHHHHHhcCCCceeEee----ecCCcceeEecCCcc
Confidence 79999999999999999999887654 23333 235789999996643
No 242
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=24.39 E-value=26 Score=38.06 Aligned_cols=53 Identities=17% Similarity=0.175 Sum_probs=37.8
Q ss_pred HHHHHHhcCCCCeEEEEEecC------CCCCcc-----ee---------EEEEeCCHHHHHHHHHHhCCCccC
Q 002280 682 EDVRLECARFGSVKSVNVVKY------GDSNIS-----TI---------QACEGNENTASAGVGQNLTNDETN 734 (943)
Q Consensus 682 eDlre~fskFG~V~~V~I~r~------~~g~~~-----G~---------~FVeF~~~e~A~~Ai~~LnGr~~~ 734 (943)
+-|+..|+.||.|-.|.||-- -+|.+. || +||+|...-.-..||.+|.|+++.
T Consensus 176 ~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqfmeykgfa~amdalr~~k~a 248 (445)
T KOG2891|consen 176 DRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQFMEYKGFAQAMDALRGMKLA 248 (445)
T ss_pred HHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHHHHHHhHHHHHHHHhcchHH
Confidence 457899999999999999842 123322 22 357777777777888889888764
No 243
>KOG1902 consensus Putative signal transduction protein involved in RNA splicing [Signal transduction mechanisms; RNA processing and modification]
Probab=23.01 E-value=52 Score=37.01 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=14.3
Q ss_pred ccccCCCChhhhHhh----hcccccccc
Q 002280 27 AARTRPFSFDEIMIR----RKTKNLSEN 50 (943)
Q Consensus 27 ~~~~~~~~~~~~~~~----~~~~~~~~~ 50 (943)
|.=-|-|+|.=|+|+ -|+-.|+.+
T Consensus 153 a~~G~~FkVkWiRl~eLpFqkt~hL~NP 180 (441)
T KOG1902|consen 153 AMLGGVFKVKWIRLRELPFQKTAHLTNP 180 (441)
T ss_pred cccCceeeEeEEeeccccchhhhhcCCc
Confidence 555677777777765 345455443
No 244
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=22.01 E-value=35 Score=43.73 Aligned_cols=18 Identities=22% Similarity=0.041 Sum_probs=11.8
Q ss_pred EEEecCHHHHHHHHHHhh
Q 002280 901 FVEYMRAEASCMAAHSLH 918 (943)
Q Consensus 901 ~v~f~~~~~a~~a~~~l~ 918 (943)
+|++.+.-.-+.|+..+.
T Consensus 955 ~ve~~~e~~vqra~~e~~ 972 (997)
T KOG0334|consen 955 LVEGPDELSVQRAIEELE 972 (997)
T ss_pred hhhcchhHHHHHHHHHHH
Confidence 577777766666665543
No 245
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=20.28 E-value=1.7e+02 Score=32.26 Aligned_cols=48 Identities=19% Similarity=0.191 Sum_probs=35.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCH
Q 002280 463 MRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTA 521 (943)
Q Consensus 463 ~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~ 521 (943)
..-||++|||.++--.+|+..+...+. + | +.+......|-||+.|.+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~------~----p-m~iswkg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKREC------T----P-MSISWKGHFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCC------C----c-eeEeeecCCcceeEecCCc
Confidence 345999999999999999999866431 1 2 3444445578899999874
No 246
>PF00906 Hepatitis_core: Hepatitis core antigen; InterPro: IPR002006 This entry represent the core domain of the viral capsid (HBcAg) from various Hepatitis B virus (HBV), which is a major human pathogen. The virus is composed of an outer envelope of host-derived lipid containing the surface proteins, and an inner protein capsid that contains genomic DNA. The capsid is composed of a single polypeptide, HBcAg, also known as the core antigen. The capsid has a 5-helical fold, where two long helices form a hairpin that dimerises into a 4-helical bundle []; this fold is unusual for icosahedral viruses. The monomer fold is stabilised by a hydrophobic core that is highly conserved among human viral variants. The capsid is assembled from dimers via interactions involving a highly conserved arginine-rich region near the C terminus. This viral capsid acts as a core antigen, the major immunodominant region lying at the tips of the alpha-helical hairpins that form spikes on the capsid surface.; GO: 0005198 structural molecule activity, 0009405 pathogenesis; PDB: 1HHH_C 2QIJ_C 3KXS_F 2G34_B 2G33_C 3OX8_F 3OXS_C 3OXR_C 1QGT_B.
Probab=20.15 E-value=34 Score=34.57 Aligned_cols=8 Identities=75% Similarity=1.045 Sum_probs=0.0
Q ss_pred CccCCCCc
Q 002280 286 RRRSRSRE 293 (943)
Q Consensus 286 RrRSRSRd 293 (943)
||||.|+.
T Consensus 169 RRRSqS~~ 176 (187)
T PF00906_consen 169 RRRSQSRR 176 (187)
T ss_dssp --------
T ss_pred cccccCcc
Confidence 44444443
Done!