Query 002280
Match_columns 943
No_of_seqs 533 out of 3052
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 19:55:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002280.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002280hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 100.0 2.3E-35 8E-40 321.3 27.3 241 460-745 19-263 (284)
2 2ghp_A U4/U6 snRNA-associated 100.0 1.9E-35 6.6E-40 323.3 24.0 244 459-744 37-289 (292)
3 2g4b_A Splicing factor U2AF 65 100.0 1.3E-27 4.3E-32 239.8 18.4 164 461-625 2-171 (172)
4 2yh0_A Splicing factor U2AF 65 99.9 4.6E-27 1.6E-31 241.1 18.6 167 462-629 3-195 (198)
5 4f02_A Polyadenylate-binding p 99.9 1.1E-27 3.7E-32 250.8 14.0 162 461-628 13-181 (213)
6 1fje_B Nucleolin RBD12, protei 99.9 2E-26 7E-31 232.1 17.0 159 460-628 10-174 (175)
7 2ghp_A U4/U6 snRNA-associated 99.9 1.2E-25 4.1E-30 245.6 20.6 152 552-744 43-195 (292)
8 3smz_A Protein raver-1, ribonu 99.9 2.9E-25 1E-29 241.6 23.5 149 552-744 24-173 (284)
9 3md3_A Nuclear and cytoplasmic 99.9 4.2E-26 1.4E-30 226.5 14.7 156 464-626 1-165 (166)
10 2qfj_A FBP-interacting repress 99.9 9.6E-26 3.3E-30 234.4 16.8 163 461-629 26-206 (216)
11 1l3k_A Heterogeneous nuclear r 99.9 7.5E-26 2.6E-30 231.7 14.1 164 460-630 10-185 (196)
12 1b7f_A Protein (SXL-lethal pro 99.9 1.5E-25 5.1E-30 223.5 14.7 158 462-625 2-168 (168)
13 2cjk_A Nuclear polyadenylated 99.9 1.3E-25 4.3E-30 224.1 11.3 159 462-628 2-166 (167)
14 1fxl_A Paraneoplastic encephal 99.9 9.7E-25 3.3E-29 216.9 17.4 157 463-625 2-167 (167)
15 3nmr_A Cugbp ELAV-like family 99.9 1.7E-24 5.9E-29 217.0 16.8 158 462-625 2-174 (175)
16 3md3_A Nuclear and cytoplasmic 99.9 8E-24 2.7E-28 210.0 20.2 161 552-743 2-164 (166)
17 1b7f_A Protein (SXL-lethal pro 99.9 1.3E-23 4.4E-28 209.4 20.5 158 552-742 5-167 (168)
18 1fxl_A Paraneoplastic encephal 99.9 1.5E-23 5E-28 208.3 19.9 158 552-742 4-164 (167)
19 4f02_A Polyadenylate-binding p 99.9 5.3E-24 1.8E-28 222.7 16.6 161 552-744 17-179 (213)
20 3tyt_A Heterogeneous nuclear r 99.9 1.2E-23 4.1E-28 219.4 16.4 152 462-625 3-204 (205)
21 3pgw_A U1-A; protein-RNA compl 99.9 2.3E-23 7.9E-28 226.3 18.3 155 460-626 6-281 (282)
22 2adc_A Polypyrimidine tract-bi 99.9 4.2E-23 1.4E-27 218.3 19.2 152 461-627 32-227 (229)
23 3sde_A Paraspeckle component 1 99.9 1.9E-23 6.7E-28 225.3 16.1 154 461-628 20-179 (261)
24 3nmr_A Cugbp ELAV-like family 99.9 8.7E-23 3E-27 204.5 19.4 159 552-742 5-173 (175)
25 2qfj_A FBP-interacting repress 99.9 1.1E-22 3.7E-27 211.3 20.3 173 552-746 30-205 (216)
26 1qm9_A Polypyrimidine tract-bi 99.9 3.3E-23 1.1E-27 213.1 14.9 150 463-627 3-196 (198)
27 1l3k_A Heterogeneous nuclear r 99.9 1.9E-22 6.5E-27 206.3 19.0 166 552-746 15-183 (196)
28 3tyt_A Heterogeneous nuclear r 99.9 2E-22 6.8E-27 210.1 17.5 171 552-738 6-195 (205)
29 2yh0_A Splicing factor U2AF 65 99.9 8E-22 2.7E-26 202.0 20.8 176 552-745 6-193 (198)
30 2g4b_A Splicing factor U2AF 65 99.9 5E-22 1.7E-26 198.9 17.4 154 552-743 6-171 (172)
31 2cjk_A Nuclear polyadenylated 99.9 1.8E-22 6.2E-27 201.2 12.4 157 552-744 5-164 (167)
32 3pgw_A U1-A; protein-RNA compl 99.9 2.3E-21 7.9E-26 210.5 21.7 176 551-743 10-280 (282)
33 1qm9_A Polypyrimidine tract-bi 99.9 1.5E-21 5E-26 200.8 18.1 174 552-744 5-195 (198)
34 2adc_A Polypyrimidine tract-bi 99.9 3.4E-21 1.2E-25 203.7 20.6 174 552-744 36-226 (229)
35 1fje_B Nucleolin RBD12, protei 99.9 9.7E-22 3.3E-26 197.8 11.0 159 550-744 13-172 (175)
36 3sde_A Paraspeckle component 1 99.9 5.9E-21 2E-25 205.9 17.6 151 552-745 24-178 (261)
37 2kn4_A Immunoglobulin G-bindin 99.7 4.3E-17 1.5E-21 162.0 13.5 123 508-630 10-152 (158)
38 3v4m_A Splicing factor U2AF 65 99.7 1.9E-16 6.5E-21 147.4 10.4 90 652-743 2-94 (105)
39 2i2y_A Fusion protein consists 99.7 1.8E-16 6E-21 156.5 10.4 116 509-628 11-148 (150)
40 3s6e_A RNA-binding protein 39; 99.6 1.6E-15 5.5E-20 143.2 10.1 87 653-744 5-91 (114)
41 4f25_A Polyadenylate-binding p 99.6 1.3E-15 4.4E-20 143.8 7.7 95 463-565 5-112 (115)
42 2kn4_A Immunoglobulin G-bindin 99.6 1E-14 3.4E-19 144.9 12.8 148 579-746 2-150 (158)
43 4f25_A Polyadenylate-binding p 99.6 4.7E-15 1.6E-19 139.9 9.8 78 552-629 7-84 (115)
44 4fxv_A ELAV-like protein 1; RN 99.6 6E-15 2.1E-19 135.6 10.1 78 550-627 19-98 (99)
45 3ue2_A Poly(U)-binding-splicin 99.5 1.6E-14 5.6E-19 137.1 8.2 84 653-743 18-106 (118)
46 2pe8_A Splicing factor 45; RRM 99.5 3.3E-14 1.1E-18 132.3 9.6 85 652-743 5-91 (105)
47 2i2y_A Fusion protein consists 99.5 8.6E-14 3E-18 137.2 13.1 141 582-744 5-146 (150)
48 2lea_A Serine/arginine-rich sp 99.5 1.4E-14 4.7E-19 140.8 7.2 119 512-630 5-129 (135)
49 3pgw_S U1-70K; protein-RNA com 99.5 2E-14 6.7E-19 166.1 8.3 79 552-630 104-184 (437)
50 2cqi_A Nucleolysin TIAR; RNA r 99.5 2.5E-13 8.7E-18 124.9 12.1 80 551-630 16-95 (103)
51 2hzc_A Splicing factor U2AF 65 99.5 1E-13 3.6E-18 123.2 8.8 84 461-545 4-87 (87)
52 2lxi_A RNA-binding protein 10; 99.5 4.5E-14 1.5E-18 127.7 6.5 78 552-629 3-84 (91)
53 3lqv_A PRE-mRNA branch site pr 99.5 7.1E-14 2.4E-18 131.3 7.7 100 461-576 6-109 (115)
54 3s8s_A Histone-lysine N-methyl 99.5 1.7E-13 5.9E-18 128.4 10.0 77 552-628 8-86 (110)
55 3md1_A Nuclear and cytoplasmic 99.5 2.4E-13 8.2E-18 119.7 10.3 77 552-628 3-81 (83)
56 2cq3_A RNA-binding protein 9; 99.4 4.2E-13 1.4E-17 123.4 11.9 80 551-630 16-95 (103)
57 2lkz_A RNA-binding protein 5; 99.4 1E-13 3.5E-18 126.6 7.6 78 550-627 9-94 (95)
58 3bs9_A Nucleolysin TIA-1 isofo 99.4 3E-13 1E-17 120.2 10.0 76 552-627 8-85 (87)
59 3p5t_L Cleavage and polyadenyl 99.4 7.3E-14 2.5E-18 125.6 5.6 78 552-629 3-84 (90)
60 2dgx_A KIAA0430 protein; RRM d 99.4 4E-13 1.4E-17 122.3 10.6 78 551-629 10-91 (96)
61 4fxv_A ELAV-like protein 1; RN 99.4 8.3E-14 2.8E-18 128.0 5.8 78 462-545 18-96 (99)
62 1whw_A Hypothetical protein ri 99.4 6.3E-13 2.2E-17 121.3 11.5 80 551-630 9-90 (99)
63 2dgo_A Cytotoxic granule-assoc 99.4 8.6E-13 2.9E-17 123.9 12.7 81 551-631 16-98 (115)
64 2wbr_A GW182, gawky, LD47780P; 99.4 3.2E-13 1.1E-17 120.6 8.8 72 551-626 8-79 (89)
65 2dgv_A HnRNP M, heterogeneous 99.4 3.5E-13 1.2E-17 121.2 9.0 79 551-629 9-87 (92)
66 2x1f_A MRNA 3'-END-processing 99.4 5.4E-13 1.8E-17 121.2 10.1 79 552-630 4-84 (96)
67 2wbr_A GW182, gawky, LD47780P; 99.4 3.3E-13 1.1E-17 120.5 8.3 71 463-545 7-78 (89)
68 2dnz_A Probable RNA-binding pr 99.4 8.3E-13 2.8E-17 119.4 11.2 79 552-630 7-87 (95)
69 2cq0_A Eukaryotic translation 99.4 4.4E-13 1.5E-17 123.3 9.5 80 551-630 16-97 (103)
70 1rk8_A CG8781-PA, CG8781-PA pr 99.4 4.2E-13 1.4E-17 134.6 10.1 115 516-630 11-154 (165)
71 3ns6_A Eukaryotic translation 99.4 1.7E-13 5.9E-18 125.9 6.5 76 552-627 8-92 (100)
72 2d9p_A Polyadenylate-binding p 99.4 4.5E-13 1.5E-17 123.3 9.2 80 551-630 16-95 (103)
73 3mdf_A Peptidyl-prolyl CIS-tra 99.4 4.8E-13 1.6E-17 118.3 9.0 74 552-625 9-84 (85)
74 1x5t_A Splicing factor 3B subu 99.4 5.5E-13 1.9E-17 120.9 9.6 79 552-630 7-88 (96)
75 4a8x_A RNA-binding protein wit 99.4 5.6E-13 1.9E-17 118.6 9.4 77 552-628 6-85 (88)
76 2do4_A Squamous cell carcinoma 99.4 5.9E-13 2E-17 121.8 9.7 79 551-629 18-97 (100)
77 2err_A Ataxin-2-binding protei 99.4 5.1E-13 1.7E-17 124.7 9.4 77 552-628 31-107 (109)
78 1x5s_A Cold-inducible RNA-bind 99.4 7.6E-13 2.6E-17 121.4 10.4 79 552-630 14-94 (102)
79 1p27_B RNA-binding protein 8A; 99.4 6E-13 2E-17 123.0 9.7 79 551-629 24-104 (106)
80 2cqb_A Peptidyl-prolyl CIS-tra 99.4 6E-13 2E-17 122.1 9.6 79 552-630 14-94 (102)
81 2cpf_A RNA binding motif prote 99.4 5.6E-13 1.9E-17 121.4 9.3 79 552-630 7-90 (98)
82 2dnm_A SRP46 splicing factor; 99.4 6.2E-13 2.1E-17 122.3 9.7 80 551-630 14-95 (103)
83 2cph_A RNA binding motif prote 99.4 7.4E-13 2.5E-17 122.4 10.3 80 551-630 16-99 (107)
84 2dgs_A DAZ-associated protein 99.4 9.3E-13 3.2E-17 120.2 10.7 79 551-630 11-91 (99)
85 3ucg_A Polyadenylate-binding p 99.4 9.9E-13 3.4E-17 117.3 10.5 76 552-628 8-85 (89)
86 1x5u_A Splicing factor 3B subu 99.4 7.6E-13 2.6E-17 122.0 10.1 79 552-630 17-97 (105)
87 2fy1_A RNA-binding motif prote 99.4 1.1E-12 3.6E-17 124.0 11.2 80 551-630 8-88 (116)
88 2dnh_A Bruno-like 5, RNA bindi 99.4 8.5E-13 2.9E-17 121.7 10.2 80 551-630 16-99 (105)
89 1jmt_A Splicing factor U2AF 35 99.4 6.1E-13 2.1E-17 123.4 9.3 88 655-742 1-102 (104)
90 2lxi_A RNA-binding protein 10; 99.4 3.1E-13 1.1E-17 122.1 6.9 77 463-545 1-80 (91)
91 1sjq_A Polypyrimidine tract-bi 99.4 8.8E-13 3E-17 122.4 9.9 76 460-547 13-91 (105)
92 1sjq_A Polypyrimidine tract-bi 99.4 6.1E-13 2.1E-17 123.5 8.8 77 551-631 17-95 (105)
93 2cqc_A Arginine/serine-rich sp 99.4 7.9E-13 2.7E-17 119.5 9.3 76 552-627 17-94 (95)
94 2lkz_A RNA-binding protein 5; 99.4 2E-13 6.9E-18 124.6 5.3 83 460-546 6-93 (95)
95 1oo0_B CG8781-PA, drosophila Y 99.4 9.7E-13 3.3E-17 122.5 10.0 80 550-629 26-107 (110)
96 2hvz_A Splicing factor, argini 99.4 8E-13 2.7E-17 121.1 9.3 76 552-630 2-77 (101)
97 2hvz_A Splicing factor, argini 99.4 2.9E-13 1E-17 124.0 6.2 84 464-559 1-100 (101)
98 2kt5_A RNA and export factor-b 99.4 2.5E-12 8.7E-17 122.5 12.9 79 551-629 36-115 (124)
99 2cpz_A CUG triplet repeat RNA- 99.4 1E-12 3.4E-17 123.5 9.9 79 552-630 27-107 (115)
100 1why_A Hypothetical protein ri 99.4 1E-12 3.5E-17 119.6 9.6 88 538-629 5-94 (97)
101 2ywk_A Putative RNA-binding pr 99.4 1.1E-12 3.6E-17 118.7 9.7 75 552-626 18-93 (95)
102 2e5h_A Zinc finger CCHC-type a 99.4 1E-12 3.4E-17 118.6 9.3 74 552-625 18-93 (94)
103 3ulh_A THO complex subunit 4; 99.4 1.3E-12 4.3E-17 121.0 10.0 76 551-626 30-106 (107)
104 2nlw_A Eukaryotic translation 99.4 7.3E-13 2.5E-17 122.7 8.3 76 552-627 17-99 (105)
105 2cpi_A CCR4-NOT transcription 99.4 5.6E-13 1.9E-17 124.8 7.5 78 552-629 17-102 (111)
106 1s79_A Lupus LA protein; RRM, 99.4 7.9E-13 2.7E-17 122.4 8.4 76 551-627 12-88 (103)
107 1x4h_A RNA-binding protein 28; 99.4 1.4E-12 4.9E-17 121.3 10.1 79 552-630 17-103 (111)
108 2krb_A Eukaryotic translation 99.4 3.9E-13 1.3E-17 118.3 5.9 71 552-622 3-80 (81)
109 2div_A TRNA selenocysteine ass 99.4 9E-13 3.1E-17 120.2 8.5 78 552-629 11-95 (99)
110 1fj7_A Nucleolin RBD1, protein 99.4 1.2E-12 4E-17 120.0 9.2 79 461-546 15-93 (101)
111 2mss_A Protein (musashi1); RNA 99.4 5E-13 1.7E-17 115.6 6.3 73 552-625 1-75 (75)
112 2la6_A RNA-binding protein FUS 99.4 1.1E-12 3.9E-17 119.8 8.9 74 552-625 15-98 (99)
113 2jwn_A Embryonic polyadenylate 99.4 1.2E-12 4E-17 124.6 9.3 77 552-629 38-116 (124)
114 2dgp_A Bruno-like 4, RNA bindi 99.4 1.6E-12 5.3E-17 120.2 9.9 80 551-630 14-98 (106)
115 3n9u_C Cleavage and polyadenyl 99.4 1.3E-12 4.4E-17 130.2 9.7 77 552-628 57-137 (156)
116 2do0_A HnRNP M, heterogeneous 99.4 3.3E-12 1.1E-16 119.6 11.9 78 552-629 17-95 (114)
117 3s8s_A Histone-lysine N-methyl 99.4 3.9E-13 1.3E-17 126.0 5.4 79 461-545 4-83 (110)
118 2jrs_A RNA-binding protein 39; 99.4 1.1E-12 3.8E-17 122.3 8.4 78 551-628 27-106 (108)
119 3ex7_B RNA-binding protein 8A; 99.4 1.3E-12 4.3E-17 124.7 9.0 80 551-630 23-104 (126)
120 2la4_A Nuclear and cytoplasmic 99.4 1.1E-12 3.9E-17 120.1 8.4 75 460-546 24-99 (101)
121 2cq4_A RNA binding motif prote 99.4 1.5E-12 5.3E-17 122.0 9.4 77 552-629 27-105 (114)
122 3r27_A HnRNP L, heterogeneous 99.4 2E-12 6.9E-17 118.8 9.9 73 552-628 23-97 (100)
123 1p1t_A Cleavage stimulation fa 99.4 9.9E-13 3.4E-17 121.0 7.9 78 552-629 10-89 (104)
124 2dhg_A TRNA selenocysteine ass 99.4 1.4E-12 4.7E-17 120.1 8.8 80 551-630 10-92 (104)
125 2dit_A HIV TAT specific factor 99.4 1.4E-12 4.9E-17 122.3 8.9 90 652-745 12-101 (112)
126 2ytc_A PRE-mRNA-splicing facto 99.3 1.7E-12 5.8E-17 114.9 8.9 74 460-545 9-84 (85)
127 1x4a_A Splicing factor, argini 99.3 2.8E-12 9.7E-17 119.2 10.7 78 551-629 23-100 (109)
128 1x4c_A Splicing factor, argini 99.3 2.4E-12 8.3E-17 119.7 10.1 75 551-630 16-95 (108)
129 3s6e_A RNA-binding protein 39; 99.3 3.1E-13 1E-17 127.6 3.9 93 836-943 5-101 (114)
130 2ad9_A Polypyrimidine tract-bi 99.3 2.2E-12 7.7E-17 122.4 9.9 76 552-631 33-110 (119)
131 3r27_A HnRNP L, heterogeneous 99.3 1.6E-12 5.5E-17 119.5 8.2 75 460-546 18-95 (100)
132 2dnq_A RNA-binding protein 4B; 99.3 4E-12 1.4E-16 114.0 10.7 74 551-630 9-82 (90)
133 2cpe_A RNA-binding protein EWS 99.3 2.2E-12 7.6E-17 120.6 9.3 80 551-630 16-105 (113)
134 3s7r_A Heterogeneous nuclear r 99.3 3.1E-12 1E-16 113.8 9.7 73 552-625 13-87 (87)
135 2dng_A Eukaryotic translation 99.3 3.1E-12 1.1E-16 117.7 10.0 78 551-630 16-95 (103)
136 1wi8_A EIF-4B, eukaryotic tran 99.3 2E-12 6.8E-17 119.2 8.6 78 551-630 16-96 (104)
137 3p5t_L Cleavage and polyadenyl 99.3 5.3E-13 1.8E-17 120.0 4.6 78 464-547 2-82 (90)
138 2ki2_A SS-DNA binding protein 99.3 7.3E-13 2.5E-17 118.7 5.3 78 552-630 3-82 (90)
139 2kxn_B Transformer-2 protein h 99.3 1.4E-12 4.8E-17 125.7 7.7 77 552-628 48-126 (129)
140 1s79_A Lupus LA protein; RRM, 99.3 5.3E-13 1.8E-17 123.6 4.5 81 461-548 9-89 (103)
141 1uaw_A Mouse-musashi-1; RNP-ty 99.3 1.6E-12 5.6E-17 112.6 7.4 73 552-625 2-76 (77)
142 1x4g_A Nucleolysin TIAR; struc 99.3 4.4E-12 1.5E-16 118.0 10.7 75 552-630 27-101 (109)
143 3mdf_A Peptidyl-prolyl CIS-tra 99.3 1.4E-12 4.7E-17 115.4 6.9 79 461-545 5-84 (85)
144 2cq1_A PTB-like protein L; RRM 99.3 4E-12 1.4E-16 117.3 10.2 75 552-630 17-93 (101)
145 2cqd_A RNA-binding region cont 99.3 6.3E-12 2.1E-16 118.2 11.7 78 551-629 18-97 (116)
146 2cqp_A RNA-binding protein 12; 99.3 1.3E-12 4.4E-17 118.9 6.8 77 551-627 16-94 (98)
147 2khc_A Testis-specific RNP-typ 99.3 2.1E-12 7.2E-17 121.7 8.5 74 552-625 42-117 (118)
148 1u6f_A Tcubp1, RNA-binding pro 99.3 3.7E-12 1.3E-16 123.6 10.3 80 552-631 44-125 (139)
149 1x4d_A Matrin 3; structural ge 99.3 1.4E-12 4.9E-17 120.5 6.9 74 552-629 17-93 (102)
150 1wex_A Hypothetical protein (r 99.3 3.6E-12 1.2E-16 118.3 9.6 75 552-630 17-93 (104)
151 2cpj_A Non-POU domain-containi 99.3 3E-12 1E-16 117.0 8.9 75 552-630 17-91 (99)
152 2dgw_A Probable RNA-binding pr 99.3 4.1E-12 1.4E-16 114.1 9.6 76 551-628 11-87 (91)
153 1x4e_A RNA binding motif, sing 99.3 5.3E-13 1.8E-17 118.2 3.7 80 461-546 3-83 (85)
154 2cq1_A PTB-like protein L; RRM 99.3 2.5E-12 8.4E-17 118.7 8.2 75 460-546 12-89 (101)
155 1x5u_A Splicing factor 3B subu 99.3 2E-12 7E-17 119.2 7.6 81 460-546 12-93 (105)
156 2mss_A Protein (musashi1); RNA 99.3 1.5E-12 5E-17 112.6 6.2 74 465-544 1-74 (75)
157 2khc_A Testis-specific RNP-typ 99.3 1.4E-12 4.9E-17 122.9 6.7 80 460-545 37-117 (118)
158 2ek1_A RNA-binding protein 12; 99.3 1.3E-12 4.4E-17 118.2 6.0 76 551-626 16-93 (95)
159 2dh8_A DAZ-associated protein 99.3 2.6E-12 8.9E-17 118.5 8.1 79 551-630 17-97 (105)
160 2jvr_A Nucleolar protein 3; RN 99.3 2.9E-12 1E-16 120.3 8.5 74 552-627 30-104 (111)
161 2a3j_A U1 small nuclear ribonu 99.3 3.5E-12 1.2E-16 122.6 9.3 77 552-629 31-111 (127)
162 2la6_A RNA-binding protein FUS 99.3 1.4E-12 4.9E-17 119.1 6.3 85 460-545 10-98 (99)
163 2dnz_A Probable RNA-binding pr 99.3 1.7E-12 6E-17 117.3 6.7 80 461-546 3-83 (95)
164 2cpj_A Non-POU domain-containi 99.3 2.3E-12 7.8E-17 117.7 7.5 76 460-547 12-88 (99)
165 1h2v_Z 20 kDa nuclear CAP bind 99.3 4.8E-12 1.6E-16 125.4 10.4 79 552-630 41-121 (156)
166 1u6f_A Tcubp1, RNA-binding pro 99.3 2.7E-12 9.3E-17 124.5 8.4 81 460-546 39-120 (139)
167 2m2b_A RNA-binding protein 10; 99.3 1.9E-12 6.7E-17 124.7 7.3 79 551-630 24-110 (131)
168 3lqv_A PRE-mRNA branch site pr 99.3 4.5E-12 1.5E-16 118.9 9.6 76 552-628 10-85 (115)
169 1whx_A Hypothetical protein ri 99.3 4.3E-12 1.5E-16 118.9 9.4 76 550-629 10-85 (111)
170 2dgt_A RNA-binding protein 30; 99.3 1E-11 3.5E-16 111.8 11.5 75 550-630 10-84 (92)
171 1x5o_A RNA binding motif, sing 99.3 4E-12 1.4E-16 119.1 9.1 78 550-627 25-111 (114)
172 2div_A TRNA selenocysteine ass 99.3 1.9E-12 6.5E-17 118.1 6.7 81 460-546 6-92 (99)
173 2cqi_A Nucleolysin TIAR; RNA r 99.3 4.7E-12 1.6E-16 116.4 9.4 79 460-546 12-91 (103)
174 2e5j_A Methenyltetrahydrofolat 99.3 4.6E-12 1.6E-16 115.3 9.2 76 460-546 16-92 (97)
175 2e5j_A Methenyltetrahydrofolat 99.3 4E-12 1.4E-16 115.8 8.8 74 552-628 21-94 (97)
176 2cpz_A CUG triplet repeat RNA- 99.3 2.4E-12 8.4E-17 120.8 7.5 81 460-546 22-103 (115)
177 1x4b_A Heterogeneous nuclear r 99.3 4.4E-12 1.5E-16 119.3 9.1 78 552-630 29-108 (116)
178 1wex_A Hypothetical protein (r 99.3 3.8E-12 1.3E-16 118.1 8.5 75 460-546 12-89 (104)
179 3n9u_C Cleavage and polyadenyl 99.3 1.2E-12 4.3E-17 130.2 5.5 80 461-546 53-135 (156)
180 2ad9_A Polypyrimidine tract-bi 99.3 3.2E-12 1.1E-16 121.4 8.0 74 461-546 29-105 (119)
181 2dis_A Unnamed protein product 99.3 4.2E-12 1.4E-16 117.8 8.8 80 551-630 9-94 (109)
182 1x4d_A Matrin 3; structural ge 99.3 1.5E-12 5.1E-17 120.4 5.6 74 461-546 13-90 (102)
183 2cpe_A RNA-binding protein EWS 99.3 2.7E-12 9.1E-17 120.1 7.4 88 460-547 12-102 (113)
184 2cpf_A RNA binding motif prote 99.3 3.1E-12 1E-16 116.5 7.6 80 461-546 3-86 (98)
185 2cpx_A Hypothetical protein FL 99.3 6.5E-12 2.2E-16 117.7 10.1 80 461-546 23-103 (115)
186 2xnq_A Nuclear polyadenylated 99.3 8.7E-12 3E-16 113.9 10.6 70 552-627 24-94 (97)
187 2j76_E EIF-4B, EIF4B, eukaryot 99.3 1.8E-12 6.3E-17 118.9 6.1 75 552-628 21-98 (100)
188 2krb_A Eukaryotic translation 99.3 1.7E-12 5.9E-17 114.1 5.7 72 464-543 2-81 (81)
189 3s7r_A Heterogeneous nuclear r 99.3 1.2E-12 4.1E-17 116.5 4.7 79 460-544 8-86 (87)
190 2la4_A Nuclear and cytoplasmic 99.3 3.6E-12 1.2E-16 116.7 8.0 72 552-627 29-100 (101)
191 2hgl_A HNRPF protein, heteroge 99.3 1.9E-12 6.5E-17 126.0 6.4 76 551-627 45-124 (136)
192 2cqc_A Arginine/serine-rich sp 99.3 3.4E-12 1.1E-16 115.3 7.6 80 461-546 13-93 (95)
193 2x1f_A MRNA 3'-END-processing 99.3 2.1E-12 7.1E-17 117.3 6.3 79 462-546 1-80 (96)
194 1x5t_A Splicing factor 3B subu 99.3 2.7E-12 9.2E-17 116.3 7.0 81 461-546 3-84 (96)
195 1wf1_A RNA-binding protein RAL 99.3 7.6E-12 2.6E-16 116.6 10.2 72 552-629 29-101 (110)
196 2cqp_A RNA-binding protein 12; 99.3 2.4E-12 8.1E-17 117.2 6.6 80 461-546 13-93 (98)
197 2ytc_A PRE-mRNA-splicing facto 99.3 5.3E-12 1.8E-16 111.7 8.7 71 551-625 13-84 (85)
198 1why_A Hypothetical protein ri 99.3 5.8E-12 2E-16 114.6 9.2 74 461-546 15-91 (97)
199 2jrs_A RNA-binding protein 39; 99.3 1.9E-12 6.5E-17 120.7 6.1 82 460-547 23-105 (108)
200 2e5h_A Zinc finger CCHC-type a 99.3 4.3E-12 1.5E-16 114.5 8.2 80 460-545 13-93 (94)
201 2dnp_A RNA-binding protein 14; 99.3 1E-11 3.4E-16 111.4 10.5 74 551-630 10-83 (90)
202 1x4a_A Splicing factor, argini 99.3 8E-12 2.8E-16 116.1 10.2 78 460-546 19-97 (109)
203 2cqb_A Peptidyl-prolyl CIS-tra 99.3 2.1E-12 7.3E-17 118.4 6.1 81 460-546 9-90 (102)
204 2rs2_A Musashi-1, RNA-binding 99.3 7E-12 2.4E-16 117.0 9.7 77 552-629 27-105 (109)
205 2jvo_A Nucleolar protein 3; nu 99.3 6E-12 2.1E-16 117.3 9.2 72 552-629 33-104 (108)
206 2jvr_A Nucleolar protein 3; RN 99.3 3.1E-12 1.1E-16 120.1 7.1 77 460-546 25-103 (111)
207 3bs9_A Nucleolysin TIA-1 isofo 99.3 1.4E-12 4.8E-17 115.8 4.6 80 461-546 4-84 (87)
208 1x4e_A RNA binding motif, sing 99.3 1.1E-12 3.6E-17 116.3 3.8 74 552-625 7-82 (85)
209 2ek1_A RNA-binding protein 12; 99.3 2E-12 7E-17 116.8 5.7 80 461-546 13-93 (95)
210 2dgu_A Heterogeneous nuclear r 99.3 8.3E-12 2.8E-16 114.9 9.9 73 552-630 13-85 (103)
211 2dgs_A DAZ-associated protein 99.3 6E-12 2E-16 114.8 8.8 80 461-546 8-87 (99)
212 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.3 5.9E-12 2E-16 121.9 9.2 74 552-625 65-140 (140)
213 2dnm_A SRP46 splicing factor; 99.3 2.3E-12 7.7E-17 118.5 5.9 80 461-546 11-91 (103)
214 1x5s_A Cold-inducible RNA-bind 99.3 3.1E-12 1E-16 117.3 6.8 81 460-546 9-90 (102)
215 1iqt_A AUF1, heterogeneous nuc 99.3 2.1E-12 7.2E-17 111.5 5.3 73 552-625 1-75 (75)
216 1whw_A Hypothetical protein ri 99.3 3.1E-12 1E-16 116.7 6.6 80 461-546 6-86 (99)
217 2ywk_A Putative RNA-binding pr 99.3 2.2E-12 7.5E-17 116.6 5.5 80 460-546 13-93 (95)
218 1nu4_A U1A RNA binding domain; 99.3 3.5E-12 1.2E-16 115.7 6.9 77 552-629 10-90 (97)
219 2dnh_A Bruno-like 5, RNA bindi 99.3 3.4E-12 1.2E-16 117.6 6.7 80 460-546 12-95 (105)
220 1x4g_A Nucleolysin TIAR; struc 99.3 8.7E-12 3E-16 116.0 9.5 76 460-547 22-98 (109)
221 2cpy_A RNA-binding protein 12; 99.3 3.5E-12 1.2E-16 119.9 6.9 77 552-629 17-95 (114)
222 1x4f_A Matrin 3; structural ge 99.3 2.4E-12 8.2E-17 120.9 5.7 75 460-546 22-100 (112)
223 2dnq_A RNA-binding protein 4B; 99.3 9.2E-12 3.1E-16 111.6 9.3 72 461-546 6-78 (90)
224 2dgv_A HnRNP M, heterogeneous 99.3 4.5E-12 1.5E-16 113.9 7.2 78 461-546 6-84 (92)
225 2db1_A Heterogeneous nuclear r 99.3 2.4E-12 8.1E-17 122.0 5.6 81 460-544 14-94 (118)
226 3md1_A Nuclear and cytoplasmic 99.3 2.1E-12 7.1E-17 113.7 4.8 77 464-546 2-79 (83)
227 2dnn_A RNA-binding protein 12; 99.3 9.1E-12 3.1E-16 116.5 9.4 74 552-627 18-92 (109)
228 2dgp_A Bruno-like 4, RNA bindi 99.3 5E-12 1.7E-16 116.8 7.5 81 460-546 10-94 (106)
229 2fy1_A RNA-binding motif prote 99.3 4.2E-12 1.4E-16 119.9 7.1 79 461-546 5-84 (116)
230 1fjc_A Nucleolin RBD2, protein 99.3 4.3E-12 1.5E-16 115.0 6.9 76 551-629 17-92 (96)
231 1x4h_A RNA-binding protein 28; 99.3 5.3E-12 1.8E-16 117.4 7.7 81 460-546 12-99 (111)
232 1wg5_A Heterogeneous nuclear r 99.3 7.2E-12 2.5E-16 115.8 8.4 77 551-628 16-94 (104)
233 2a3j_A U1 small nuclear ribonu 99.3 9.2E-12 3.2E-16 119.7 9.4 77 461-546 27-108 (127)
234 2cpd_A Apobec-1 stimulating pr 99.3 2E-11 6.9E-16 111.4 11.3 72 552-629 17-90 (99)
235 2xnq_A Nuclear polyadenylated 99.3 9.4E-12 3.2E-16 113.6 9.0 73 460-546 19-93 (97)
236 4a8x_A RNA-binding protein wit 99.3 8.6E-12 2.9E-16 110.8 8.5 78 462-545 3-82 (88)
237 1iqt_A AUF1, heterogeneous nuc 99.3 3.3E-12 1.1E-16 110.3 5.6 74 465-544 1-74 (75)
238 2cph_A RNA binding motif prote 99.3 1E-11 3.5E-16 114.7 9.3 81 460-546 12-95 (107)
239 2db1_A Heterogeneous nuclear r 99.3 4.1E-12 1.4E-16 120.3 6.7 77 551-628 18-98 (118)
240 2nlw_A Eukaryotic translation 99.3 2.8E-12 9.7E-17 118.7 5.5 80 461-548 13-100 (105)
241 2cpx_A Hypothetical protein FL 99.3 9.2E-12 3.1E-16 116.7 9.0 77 552-630 27-107 (115)
242 3ucg_A Polyadenylate-binding p 99.3 2.8E-12 9.6E-17 114.4 5.3 79 463-547 6-84 (89)
243 1whx_A Hypothetical protein ri 99.3 5.7E-12 2E-16 118.0 7.5 73 462-546 9-82 (111)
244 2fc9_A NCL protein; structure 99.3 7.4E-12 2.5E-16 114.7 8.1 76 551-629 16-92 (101)
245 2m2b_A RNA-binding protein 10; 99.3 4E-12 1.4E-16 122.5 6.6 82 460-546 20-106 (131)
246 3q2s_C Cleavage and polyadenyl 99.3 5.9E-12 2E-16 133.2 8.5 76 552-627 70-149 (229)
247 1wez_A HnRNP H', FTP-3, hetero 99.3 4.8E-12 1.6E-16 116.8 6.8 75 552-628 17-92 (102)
248 2kvi_A Nuclear polyadenylated 99.3 8.5E-12 2.9E-16 113.4 8.3 73 551-629 11-84 (96)
249 2dgo_A Cytotoxic granule-assoc 99.3 3.6E-12 1.2E-16 119.6 6.0 81 460-546 12-93 (115)
250 2cqh_A IGF-II mRNA-binding pro 99.3 5.4E-12 1.8E-16 113.8 6.9 74 461-546 6-81 (93)
251 2cq3_A RNA-binding protein 9; 99.3 1.1E-11 3.8E-16 113.9 9.2 75 460-546 12-91 (103)
252 2jvo_A Nucleolar protein 3; nu 99.3 8.2E-12 2.8E-16 116.4 8.3 73 460-546 28-101 (108)
253 1x4f_A Matrin 3; structural ge 99.3 5.7E-12 1.9E-16 118.4 7.1 75 551-629 26-103 (112)
254 2lmi_A GRSF-1, G-rich sequence 99.3 3.8E-12 1.3E-16 118.2 5.9 82 460-545 8-89 (107)
255 2cqg_A TDP-43, TAR DNA-binding 99.3 1.7E-11 5.7E-16 112.7 10.1 77 551-629 16-94 (103)
256 1p27_B RNA-binding protein 8A; 99.3 6.9E-12 2.4E-16 115.8 7.6 80 461-546 21-101 (106)
257 3zzy_A Polypyrimidine tract-bi 99.3 2.3E-11 7.8E-16 117.1 11.4 76 552-630 30-108 (130)
258 2cpy_A RNA-binding protein 12; 99.3 3.2E-12 1.1E-16 120.2 5.3 79 460-545 12-91 (114)
259 2dhg_A TRNA selenocysteine ass 99.3 6.3E-12 2.1E-16 115.7 7.2 80 460-546 6-88 (104)
260 2kxn_B Transformer-2 protein h 99.3 4E-12 1.4E-16 122.5 6.1 82 460-547 43-125 (129)
261 2cq0_A Eukaryotic translation 99.3 2.3E-12 7.9E-17 118.5 4.1 81 460-546 12-93 (103)
262 2dng_A Eukaryotic translation 99.3 3.5E-12 1.2E-16 117.3 5.3 80 460-546 12-91 (103)
263 1oo0_B CG8781-PA, drosophila Y 99.2 4.4E-12 1.5E-16 118.1 5.7 80 461-546 24-104 (110)
264 2d9p_A Polyadenylate-binding p 99.2 4.5E-12 1.5E-16 116.5 5.8 79 460-546 12-91 (103)
265 1x4c_A Splicing factor, argini 99.2 1.3E-11 4.5E-16 114.8 8.9 73 461-546 13-91 (108)
266 3ulh_A THO complex subunit 4; 99.2 4.3E-12 1.5E-16 117.4 5.6 78 461-545 27-105 (107)
267 2dgx_A KIAA0430 protein; RRM d 99.2 1.2E-11 4E-16 112.5 8.4 74 461-546 7-88 (96)
268 2j76_E EIF-4B, EIF4B, eukaryot 99.2 2.1E-12 7.2E-17 118.4 3.4 80 460-546 16-96 (100)
269 2cqh_A IGF-II mRNA-binding pro 99.2 1.2E-11 4E-16 111.6 8.2 74 552-630 10-85 (93)
270 2err_A Ataxin-2-binding protei 99.2 6.4E-12 2.2E-16 117.2 6.6 79 460-546 26-105 (109)
271 2e44_A Insulin-like growth fac 99.2 1.3E-11 4.3E-16 111.9 8.4 76 551-628 16-92 (96)
272 2fc9_A NCL protein; structure 99.2 5.2E-12 1.8E-16 115.7 5.8 77 460-546 12-89 (101)
273 1wi8_A EIF-4B, eukaryotic tran 99.2 5.4E-12 1.8E-16 116.3 5.9 79 461-546 13-92 (104)
274 1wel_A RNA-binding protein 12; 99.2 3.2E-12 1.1E-16 121.9 4.5 79 461-545 23-101 (124)
275 1nu4_A U1A RNA binding domain; 99.2 1.2E-11 4.1E-16 112.2 7.8 78 460-546 5-87 (97)
276 1wel_A RNA-binding protein 12; 99.2 2.9E-12 9.8E-17 122.2 3.8 77 551-628 26-104 (124)
277 1fj7_A Nucleolin RBD1, protein 99.2 2.9E-12 1E-16 117.4 3.7 77 551-629 18-96 (101)
278 2hgn_A Heterogeneous nuclear r 99.2 2.7E-12 9.1E-17 125.4 3.6 115 512-629 2-124 (139)
279 2hgl_A HNRPF protein, heteroge 99.2 4.7E-12 1.6E-16 123.2 5.2 82 460-545 41-122 (136)
280 2dnp_A RNA-binding protein 14; 99.2 1.9E-11 6.7E-16 109.5 8.8 73 460-546 6-79 (90)
281 2fc8_A NCL protein; structure 99.2 4.9E-12 1.7E-16 116.0 4.9 78 460-546 12-90 (102)
282 1sjr_A Polypyrimidine tract-bi 99.2 3E-11 1E-15 120.6 10.9 78 551-630 47-126 (164)
283 1p1t_A Cleavage stimulation fa 99.2 5.3E-12 1.8E-16 116.1 5.1 79 462-546 7-86 (104)
284 2do0_A HnRNP M, heterogeneous 99.2 7.4E-12 2.5E-16 117.2 6.2 79 460-545 12-91 (114)
285 3beg_B Splicing factor, argini 99.2 1.2E-11 4E-16 116.6 7.6 72 551-627 17-93 (115)
286 3ex7_B RNA-binding protein 8A; 99.2 8.1E-12 2.8E-16 119.1 6.5 80 461-546 20-100 (126)
287 1x4b_A Heterogeneous nuclear r 99.2 3.2E-12 1.1E-16 120.2 3.6 79 462-546 26-104 (116)
288 3egn_A RNA-binding protein 40; 99.2 1.1E-11 3.6E-16 121.1 7.4 77 552-629 47-131 (143)
289 2e5g_A U6 snRNA-specific termi 99.2 2.1E-11 7.3E-16 110.2 8.9 74 552-629 10-83 (94)
290 2xs2_A Deleted in azoospermia- 99.2 1.6E-11 5.6E-16 112.5 8.2 79 550-630 9-88 (102)
291 1wg1_A KIAA1579 protein, homol 99.2 2.2E-11 7.5E-16 108.9 8.8 72 552-628 7-78 (88)
292 2lmi_A GRSF-1, G-rich sequence 99.2 4.5E-12 1.5E-16 117.8 4.3 76 552-628 13-92 (107)
293 2dis_A Unnamed protein product 99.2 1.9E-11 6.7E-16 113.3 8.6 80 461-546 6-90 (109)
294 1wg5_A Heterogeneous nuclear r 99.2 6.8E-12 2.3E-16 115.9 5.4 79 461-545 13-91 (104)
295 3pgw_S U1-70K; protein-RNA com 99.2 4.1E-12 1.4E-16 146.7 4.8 82 652-745 99-181 (437)
296 3egn_A RNA-binding protein 40; 99.2 1.2E-11 4.2E-16 120.6 7.5 86 460-546 42-128 (143)
297 2cpd_A Apobec-1 stimulating pr 99.2 2.9E-11 9.8E-16 110.4 9.4 75 460-546 12-87 (99)
298 2dh8_A DAZ-associated protein 99.2 5.6E-12 1.9E-16 116.3 4.7 81 460-546 13-93 (105)
299 2f3j_A RNA and export factor b 99.2 1.9E-11 6.4E-16 124.2 9.0 78 552-629 90-168 (177)
300 2e5i_A Heterogeneous nuclear r 99.2 4.5E-11 1.5E-15 114.3 11.1 75 552-630 27-104 (124)
301 2cqd_A RNA-binding region cont 99.2 1.3E-11 4.6E-16 115.9 7.4 80 460-546 14-94 (116)
302 1wez_A HnRNP H', FTP-3, hetero 99.2 3.5E-12 1.2E-16 117.7 3.2 76 461-544 13-88 (102)
303 2cq4_A RNA binding motif prote 99.2 7E-12 2.4E-16 117.5 5.2 77 462-544 24-100 (114)
304 1wf1_A RNA-binding protein RAL 99.2 2.1E-11 7.2E-16 113.6 8.4 71 462-546 26-98 (110)
305 2dgw_A Probable RNA-binding pr 99.2 9E-12 3.1E-16 111.9 5.5 78 461-546 8-85 (91)
306 1x5p_A Negative elongation fac 99.2 5.4E-11 1.8E-15 108.2 10.8 73 552-630 17-89 (97)
307 1uaw_A Mouse-musashi-1; RNP-ty 99.2 5.7E-12 1.9E-16 109.2 4.0 74 464-544 1-75 (77)
308 2dgt_A RNA-binding protein 30; 99.2 2.3E-11 7.7E-16 109.5 8.0 73 460-546 7-80 (92)
309 2rs2_A Musashi-1, RNA-binding 99.2 1.9E-11 6.4E-16 114.1 7.6 82 459-546 21-102 (109)
310 2dgu_A Heterogeneous nuclear r 99.2 2.7E-11 9.3E-16 111.4 8.6 72 461-546 9-81 (103)
311 2kvi_A Nuclear polyadenylated 99.2 2.2E-11 7.6E-16 110.6 7.8 72 460-545 7-80 (96)
312 1fjc_A Nucleolin RBD2, protein 99.2 7.7E-12 2.6E-16 113.4 4.7 75 461-546 14-89 (96)
313 1x5p_A Negative elongation fac 99.2 3.6E-11 1.2E-15 109.4 9.2 73 460-546 12-85 (97)
314 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.2 3.2E-11 1.1E-15 116.7 9.4 79 460-544 60-139 (140)
315 2e5g_A U6 snRNA-specific termi 99.2 3.7E-11 1.3E-15 108.6 9.1 74 461-546 6-80 (94)
316 2cq2_A Hypothetical protein LO 99.2 3.1E-11 1.1E-15 113.6 8.5 73 551-627 26-105 (114)
317 2dha_A FLJ20171 protein; RRM d 99.2 1.1E-11 3.9E-16 118.4 5.6 82 460-544 20-101 (123)
318 2dha_A FLJ20171 protein; RRM d 99.2 1.3E-11 4.4E-16 118.0 5.7 75 552-627 25-104 (123)
319 2diu_A KIAA0430 protein; struc 99.2 4.1E-11 1.4E-15 108.1 8.5 70 462-547 7-83 (96)
320 2ki2_A SS-DNA binding protein 99.2 5E-12 1.7E-16 113.2 2.5 76 464-546 2-78 (90)
321 3ns6_A Eukaryotic translation 99.2 6.4E-11 2.2E-15 108.6 9.9 86 654-745 5-92 (100)
322 2hzc_A Splicing factor U2AF 65 99.2 4.3E-11 1.5E-15 106.1 8.5 68 552-624 8-86 (87)
323 2fc8_A NCL protein; structure 99.2 3.1E-11 1.1E-15 110.5 7.8 76 552-630 17-94 (102)
324 1h2v_Z 20 kDa nuclear CAP bind 99.2 3.1E-11 1E-15 119.6 8.3 81 460-546 36-117 (156)
325 2cqg_A TDP-43, TAR DNA-binding 99.2 2.2E-11 7.4E-16 111.9 6.7 80 460-546 12-91 (103)
326 2jwn_A Embryonic polyadenylate 99.2 1.1E-11 3.8E-16 117.8 4.7 79 462-546 35-113 (124)
327 2lcw_A RNA-binding protein FUS 98.8 2.5E-12 8.4E-17 121.1 0.0 79 552-630 9-97 (116)
328 2hgm_A HNRPF protein, heteroge 99.2 1.4E-11 4.8E-16 118.2 5.3 79 461-545 40-118 (126)
329 3d2w_A TAR DNA-binding protein 99.2 5.3E-11 1.8E-15 107.0 8.7 71 552-629 13-85 (89)
330 2cpi_A CCR4-NOT transcription 99.2 1.6E-11 5.5E-16 114.8 5.4 81 461-547 13-100 (111)
331 1wg1_A KIAA1579 protein, homol 99.2 2E-11 6.8E-16 109.2 5.8 73 461-546 3-76 (88)
332 2kt5_A RNA and export factor-b 99.2 5.9E-11 2E-15 112.9 9.4 79 461-546 33-112 (124)
333 2cq2_A Hypothetical protein LO 99.2 4.4E-11 1.5E-15 112.6 8.2 71 461-543 23-101 (114)
334 3beg_B Splicing factor, argini 99.2 2.8E-11 9.7E-16 113.9 7.0 70 461-543 14-84 (115)
335 2lea_A Serine/arginine-rich sp 99.2 2.9E-11 9.7E-16 117.4 7.1 121 592-746 6-127 (135)
336 2dnn_A RNA-binding protein 12; 99.2 1.6E-11 5.5E-16 114.8 5.0 75 463-545 16-90 (109)
337 2voo_A Lupus LA protein; RNA-b 99.2 1.1E-10 3.7E-15 120.2 11.4 107 520-627 63-186 (193)
338 1rk8_A CG8781-PA, CG8781-PA pr 99.1 1E-10 3.4E-15 117.2 10.4 137 595-747 11-153 (165)
339 2lcw_A RNA-binding protein FUS 98.8 4E-12 1.4E-16 119.6 0.0 87 460-546 4-93 (116)
340 3q2s_C Cleavage and polyadenyl 99.1 1.6E-11 5.3E-16 129.9 4.3 79 462-546 67-148 (229)
341 2pe8_A Splicing factor 45; RRM 99.1 1.3E-10 4.5E-15 107.9 10.0 76 552-627 10-93 (105)
342 2hgn_A Heterogeneous nuclear r 99.1 1.3E-11 4.6E-16 120.4 3.4 79 460-546 43-121 (139)
343 2j8a_A Histone-lysine N-methyl 99.1 7.4E-11 2.5E-15 112.2 8.3 74 552-625 4-93 (136)
344 1x5o_A RNA binding motif, sing 99.1 3.7E-11 1.2E-15 112.5 6.2 75 460-541 22-97 (114)
345 2diu_A KIAA0430 protein; struc 99.1 1.2E-10 4.2E-15 105.0 9.1 71 552-630 11-86 (96)
346 2do4_A Squamous cell carcinoma 99.1 2.7E-10 9.1E-15 104.0 11.5 82 652-745 14-95 (100)
347 2hgm_A HNRPF protein, heteroge 99.1 5.2E-11 1.8E-15 114.3 6.5 74 552-627 44-120 (126)
348 2bz2_A Negative elongation fac 99.1 1.3E-10 4.3E-15 110.7 8.8 73 552-630 41-113 (121)
349 3u1l_A PRE-mRNA-splicing facto 99.1 2.2E-10 7.6E-15 121.4 10.9 99 526-628 102-229 (240)
350 2bz2_A Negative elongation fac 99.1 1.2E-10 4.2E-15 110.8 7.8 72 461-546 37-109 (121)
351 2xs2_A Deleted in azoospermia- 99.1 1.4E-11 4.7E-16 113.0 0.7 76 462-545 8-83 (102)
352 2f3j_A RNA and export factor b 99.1 9.4E-11 3.2E-15 119.1 6.7 79 461-546 86-165 (177)
353 2dnl_A Cytoplasmic polyadenyla 99.1 1E-10 3.5E-15 109.9 6.3 74 461-543 6-83 (114)
354 2dnl_A Cytoplasmic polyadenyla 99.1 2.4E-10 8.4E-15 107.2 8.8 71 551-624 9-84 (114)
355 1wf0_A TDP-43, TAR DNA-binding 99.1 9.9E-11 3.4E-15 104.4 5.6 74 552-630 7-80 (88)
356 2e44_A Insulin-like growth fac 99.1 2.7E-10 9.2E-15 103.1 8.6 74 461-546 13-90 (96)
357 1sjr_A Polypyrimidine tract-bi 99.0 2.8E-10 9.5E-15 113.6 8.5 73 464-546 47-122 (164)
358 2e5i_A Heterogeneous nuclear r 99.0 3.2E-10 1.1E-14 108.4 8.5 70 465-546 27-100 (124)
359 3v4m_A Splicing factor U2AF 65 99.0 8.2E-11 2.8E-15 109.2 3.6 68 873-940 31-102 (105)
360 3zzy_A Polypyrimidine tract-bi 99.0 3E-10 1E-14 109.3 7.5 71 464-546 29-104 (130)
361 2dit_A HIV TAT specific factor 99.0 1E-09 3.4E-14 102.7 9.8 75 552-628 17-102 (112)
362 1wf0_A TDP-43, TAR DNA-binding 99.0 2.4E-10 8.2E-15 101.9 5.3 73 461-546 3-76 (88)
363 2voo_A Lupus LA protein; RNA-b 99.0 2.4E-10 8.1E-15 117.7 5.6 81 462-549 108-188 (193)
364 3d2w_A TAR DNA-binding protein 99.0 6.1E-10 2.1E-14 100.0 7.5 72 460-546 8-82 (89)
365 3u1l_A PRE-mRNA-splicing facto 99.0 4.2E-10 1.4E-14 119.3 7.4 76 460-547 131-228 (240)
366 3dxb_A Thioredoxin N-terminall 99.0 1.3E-09 4.6E-14 114.0 10.3 84 653-743 122-210 (222)
367 1jmt_A Splicing factor U2AF 35 98.9 4E-10 1.4E-14 104.4 4.4 71 555-625 20-103 (104)
368 3ue2_A Poly(U)-binding-splicin 98.9 1.9E-09 6.5E-14 102.2 7.6 76 552-627 22-108 (118)
369 2j8a_A Histone-lysine N-methyl 98.9 4E-10 1.4E-14 107.2 2.8 74 464-543 3-91 (136)
370 3tht_A Alkylated DNA repair pr 98.8 1.3E-08 4.5E-13 113.3 9.7 64 460-535 15-81 (345)
371 2d9o_A DNAJ (HSP40) homolog, s 98.7 2.5E-08 8.4E-13 91.7 8.7 65 560-629 27-91 (100)
372 3tht_A Alkylated DNA repair pr 98.7 1.8E-08 6.1E-13 112.3 8.2 70 552-625 20-96 (345)
373 2d9o_A DNAJ (HSP40) homolog, s 98.5 1.9E-07 6.6E-12 85.7 8.1 58 682-745 32-89 (100)
374 2dnr_A Synaptojanin-1; RRM dom 98.4 7.6E-07 2.6E-11 79.6 8.1 70 552-628 9-86 (91)
375 2dnr_A Synaptojanin-1; RRM dom 98.3 9.1E-07 3.1E-11 79.1 7.2 59 678-744 26-84 (91)
376 3dxb_A Thioredoxin N-terminall 98.3 1.1E-06 3.9E-11 91.7 8.5 104 515-626 100-211 (222)
377 1owx_A Lupus LA protein, SS-B, 98.3 1.5E-06 5.1E-11 82.3 7.7 68 552-623 20-91 (121)
378 1owx_A Lupus LA protein, SS-B, 98.1 4E-06 1.4E-10 79.4 7.1 71 461-543 16-91 (121)
379 1ufw_A Synaptojanin 2; RNP dom 98.1 3.7E-06 1.3E-10 75.6 6.1 67 552-625 17-92 (95)
380 1ufw_A Synaptojanin 2; RNP dom 98.1 1.4E-06 4.7E-11 78.3 2.7 58 678-743 35-92 (95)
381 2l9w_A U4/U6 snRNA-associated- 97.8 6.2E-05 2.1E-09 69.0 8.7 70 551-624 22-96 (117)
382 2dhx_A Poly (ADP-ribose) polym 97.4 0.0007 2.4E-08 61.6 9.1 93 462-563 7-99 (104)
383 2l9w_A U4/U6 snRNA-associated- 97.3 0.00055 1.9E-08 62.8 7.9 76 462-544 20-96 (117)
384 1wey_A Calcipressin 1; structu 96.2 0.025 8.5E-07 51.7 9.7 74 550-627 5-83 (104)
385 1whv_A Poly(A)-specific ribonu 95.3 0.033 1.1E-06 50.2 6.5 53 552-611 18-70 (100)
386 1wey_A Calcipressin 1; structu 95.2 0.024 8.1E-07 51.8 5.7 70 462-543 4-79 (104)
387 2dhx_A Poly (ADP-ribose) polym 94.7 0.13 4.5E-06 46.8 9.1 69 552-627 10-83 (104)
388 1wwh_A Nucleoporin 35, nucleop 94.5 0.14 4.8E-06 47.9 8.9 69 552-626 26-95 (119)
389 1uw4_A UPF3X; nonsense mediate 94.4 0.14 4.7E-06 45.8 8.4 65 552-616 3-71 (91)
390 3ctr_A Poly(A)-specific ribonu 94.1 0.082 2.8E-06 47.7 6.2 53 552-611 8-60 (101)
391 1wwh_A Nucleoporin 35, nucleop 93.2 0.19 6.4E-06 47.1 7.2 63 463-538 24-86 (119)
392 1uw4_A UPF3X; nonsense mediate 90.8 0.18 6.2E-06 45.0 4.0 65 464-538 2-73 (91)
393 3p3d_A Nucleoporin 53; structu 90.3 0.41 1.4E-05 45.4 6.1 74 552-627 9-98 (132)
394 3pq1_A Poly(A) RNA polymerase; 89.7 0.18 6.3E-06 57.9 3.9 62 462-536 52-114 (464)
395 1whv_A Poly(A)-specific ribonu 89.2 0.9 3.1E-05 40.9 7.0 53 462-529 15-67 (100)
396 2l08_A Regulator of nonsense t 88.9 0.37 1.3E-05 43.4 4.5 72 462-538 8-81 (97)
397 3pq1_A Poly(A) RNA polymerase; 86.7 0.42 1.4E-05 54.9 4.3 53 552-608 55-107 (464)
398 2l08_A Regulator of nonsense t 85.3 0.53 1.8E-05 42.4 3.3 64 552-615 11-78 (97)
399 3ctr_A Poly(A)-specific ribonu 81.8 0.93 3.2E-05 40.9 3.4 53 464-531 7-60 (101)
400 1jmt_B Splicing factor U2AF 65 81.4 0.36 1.2E-05 33.3 0.4 17 391-407 6-22 (28)
401 3p3d_A Nucleoporin 53; structu 80.2 1.7 5.8E-05 41.3 4.7 74 464-540 8-91 (132)
402 3d45_A Poly(A)-specific ribonu 57.3 17 0.0006 42.1 7.6 53 552-611 442-494 (507)
403 3d45_A Poly(A)-specific ribonu 26.3 85 0.0029 36.3 6.7 54 463-531 440-494 (507)
404 3lpe_A Putative transcription 23.1 1.3E+02 0.0045 26.3 5.8 33 694-730 40-72 (92)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=2.3e-35 Score=321.29 Aligned_cols=241 Identities=15% Similarity=0.193 Sum_probs=211.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccccc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr 538 (943)
....++|||+|||+.+|+++|+++|+.|| |..+.++.++|||||+|.+.++|..|+. |||..|.|+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G-------------i~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~ 85 (284)
T 3smz_A 19 FRNRRKILIRGLPGDVTNQEVHDLLSDYE-------------LKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRLRER 85 (284)
T ss_dssp HHCCCEEEEECCCTTCCHHHHHHHTTTSC-------------EEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcC-------------CEEEEEecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCe
Confidence 34578999999999999999999998876 2445558899999999999999999998 999999999
Q ss_pred cccccCCccceeEEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccC
Q 002280 539 ILKIKRPKEFVEVAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVG 616 (943)
Q Consensus 539 ~LkV~rp~d~~~~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~ 616 (943)
+|.|..... ..+|||+|||..+++++|+++|+.||.|..+.++.+ ++.++|||||+|.+.++|.+|+..|+|..|.
T Consensus 86 ~i~v~~~~~--~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~ 163 (284)
T 3smz_A 86 ELSVQLQPT--DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLG 163 (284)
T ss_dssp ECEEEECCC--SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred EEEEEecCC--CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeC
Confidence 999986432 238999999999999999999999999999999887 4567899999999999999999999999999
Q ss_pred CeEEEEEEcccCCCcCCCCCCCCCCCCCCCcCCCCCCCceEEEeccCCCcC-CCCCCChHHHHHHHHHHHHHhcCCCCeE
Q 002280 617 GQVLTAVQAVLDGSIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPE-GFSSLSELEVEEVLEDVRLECARFGSVK 695 (943)
Q Consensus 617 gr~L~V~~A~~~~~~~~~~~~~~~~~ip~~~~~~~~~ps~vL~L~Nlv~~~-~l~~i~~~~~~ei~eDlre~fskFG~V~ 695 (943)
|+.|.|.++.+..... ...+..+|+|.||.... +. ++|+++|++||.|.
T Consensus 164 g~~i~v~~a~~~~~~~------------------~~~~~~~l~v~nlp~~~~~~------------~~l~~~f~~~G~i~ 213 (284)
T 3smz_A 164 PRTLYVHWTDAGQLTP------------------ALLHSRCLCVDRLPPGFNDV------------DALCRALSAVHSPT 213 (284)
T ss_dssp TEECEEEECCGGGCCT------------------TTTSCSEEEEECCCTTCCCH------------HHHHHHTCSSSCCS
T ss_pred CcEEEEEECCCCCCCc------------------ccCCccEEEEecCCcccCCH------------HHHHHHhhCCCCeE
Confidence 9999999986643311 12457889999996542 32 68999999999999
Q ss_pred EEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCceEEEEecc
Q 002280 696 SVNVVKYGDSNISTIQACEGNENTASAGVGQNLTNDETNEKGERLEEVTD 745 (943)
Q Consensus 696 ~V~I~r~~~g~~~G~~FVeF~~~e~A~~Ai~~LnGr~~~~k~~~v~~~~~ 745 (943)
.|.|+.+..|..+|+|||+|.+.++|.+|+..|||..|+++.+.|..+..
T Consensus 214 ~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 263 (284)
T 3smz_A 214 FCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAP 263 (284)
T ss_dssp EEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCS
T ss_pred EEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecC
Confidence 99999998899999999999999999999999999999999999988754
No 2
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=1.9e-35 Score=323.25 Aligned_cols=244 Identities=13% Similarity=0.131 Sum_probs=201.1
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeee----ecCCCeeeEEeCCHHHHHHHHHccCCc
Q 002280 459 SNRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVI----QREKGQAFVEFLTAEDASAALCCDGCS 534 (943)
Q Consensus 459 ~~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~----~~skGyAFVeF~s~edA~~Al~LnG~~ 534 (943)
..+..++|||+|||+.+|+++|+++|+.||.+ ..+.+ ..++|||||+|.+.++|..||.+||..
T Consensus 37 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i------------~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~ 104 (292)
T 2ghp_A 37 RNRELTTVLVKNLPKSYNQNKVYKYFKHCGPI------------IHVDVADSLKKNFRFARIEFARYDGALAAITKTHKV 104 (292)
T ss_dssp -----CEEEEEEECTTCCHHHHHHHHGGGSCE------------EEEEEEECTTSSSEEEEEEESSHHHHHHHHTTTTCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCe------------EEEEEEECCCCCcEEEEEEECCHHHHHHHHHhCCcE
Confidence 35678999999999999999999999998843 33333 225899999999999999999999999
Q ss_pred cccccccccCCccceeEEEEEecCCCCCCHHHHHHHHhhcC-CeeEEEEEecC-CCCCCEEEEeecChhHHHHHHHHhCC
Q 002280 535 FSGSILKIKRPKEFVEVAIFIGGISRTLSSKMVMEIVCAFG-PLKAYHFEVNE-DHEEPCAFIEYVDQLVTPKAIAGLNG 612 (943)
Q Consensus 535 l~Gr~LkV~rp~d~~~~~LfV~NLp~~~teedL~e~Fs~fG-~I~~v~l~~d~-~~skG~aFVeF~~~e~A~kAl~~LnG 612 (943)
|.|++|.|.+.... +|||+|||..+++++|.++|+.|| .|..|.|+.+. +.++|||||+|.+.++|.+|+..|||
T Consensus 105 ~~g~~i~v~~~~~~---~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 181 (292)
T 2ghp_A 105 VGQNEIIVSHLTEC---TLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNG 181 (292)
T ss_dssp ETTEECEEEECCSC---EEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTT
T ss_pred eCCcEEEEEECCCC---EEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCC
Confidence 99999999876433 999999999999999999999999 99999998774 56799999999999999999999999
Q ss_pred CccCCeEEEEEEcccCCCcCCCCCCCCCCCCCCCcCCCCCCCceEEEeccCCCc-CCCCCCChHHHHHHHHHHHHHhcCC
Q 002280 613 LKVGGQVLTAVQAVLDGSIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNP-EGFSSLSELEVEEVLEDVRLECARF 691 (943)
Q Consensus 613 ~~~~gr~L~V~~A~~~~~~~~~~~~~~~~~ip~~~~~~~~~ps~vL~L~Nlv~~-~~l~~i~~~~~~ei~eDlre~fskF 691 (943)
..|.|+.|.|.++.+....... .....+..+|+|.||... .+. ++|+++|++|
T Consensus 182 ~~~~g~~l~v~~a~~~~~~~~~--------------~~~~~~~~~l~v~nlp~~~~t~------------~~l~~~F~~~ 235 (292)
T 2ghp_A 182 LKIEGYTLVTKVSNPLEKSKRT--------------DSATLEGREIMIRNLSTELLDE------------NLLRESFEGF 235 (292)
T ss_dssp CEETTEECEEEECCCC-----------------------CCTTTEEEEEEECTTTCCH------------HHHHHHHGGG
T ss_pred CEeCCcEEEEEECCCCcccccc--------------cccCCCCceEEEECCCcccCCH------------HHHHHHHhcc
Confidence 9999999999998765432111 011346789999999654 332 6899999999
Q ss_pred CCeEEEEEecCCC--CCcceeEEEEeCCHHHHHHHHHHhCCCccCCCceEEEEec
Q 002280 692 GSVKSVNVVKYGD--SNISTIQACEGNENTASAGVGQNLTNDETNEKGERLEEVT 744 (943)
Q Consensus 692 G~V~~V~I~r~~~--g~~~G~~FVeF~~~e~A~~Ai~~LnGr~~~~k~~~v~~~~ 744 (943)
|.|+.|.|+++.. |..+|||||+|.+.++|.+|+ .|||..|+++.+.|..+.
T Consensus 236 G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~ 289 (292)
T 2ghp_A 236 GSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLAD 289 (292)
T ss_dssp SCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECC
T ss_pred CCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEec
Confidence 9999999999876 889999999999999999999 999999999999987764
No 3
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.95 E-value=1.3e-27 Score=239.77 Aligned_cols=164 Identities=37% Similarity=0.670 Sum_probs=149.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHHccCCccccccc
Q 002280 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSIL 540 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~LnG~~l~Gr~L 540 (943)
++.++|||+|||+.+|+++|+++|++||.+.|+...+. .+|.++.++.++|||||+|.+.++|..|+.|||..|.|++|
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~-~~v~~~~~~~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~i 80 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPG-NPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSL 80 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSS-CSEEEEEEETTTTEEEEEESSHHHHHHHGGGTTCEETTEEC
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCC-CceeeeEecCCCCEEEEEeCCHHHHHHHHHhCCcEecCcee
Confidence 35689999999999999999999999987777543332 37888999999999999999999999999999999999999
Q ss_pred cccCCcccee----EEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCc
Q 002280 541 KIKRPKEFVE----VAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLK 614 (943)
Q Consensus 541 kV~rp~d~~~----~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~ 614 (943)
.|.++..+.. .+|||+|||..+++++|+++|++||.|..+.++.+ ++.++|+|||+|.+.++|.+|+..|||..
T Consensus 81 ~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 160 (172)
T 2g4b_A 81 KIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQ 160 (172)
T ss_dssp EEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCE
T ss_pred eecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCE
Confidence 9998876544 39999999999999999999999999999999988 45669999999999999999999999999
Q ss_pred cCCeEEEEEEc
Q 002280 615 VGGQVLTAVQA 625 (943)
Q Consensus 615 ~~gr~L~V~~A 625 (943)
|+|+.|.|.+|
T Consensus 161 ~~g~~l~V~~A 171 (172)
T 2g4b_A 161 LGDKKLLVQRA 171 (172)
T ss_dssp ETTEECEEEEC
T ss_pred ECCeEEEEEeC
Confidence 99999999987
No 4
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.95 E-value=4.6e-27 Score=241.07 Aligned_cols=167 Identities=37% Similarity=0.659 Sum_probs=149.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHHccCCcccccccc
Q 002280 462 PMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSILK 541 (943)
Q Consensus 462 ~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~LnG~~l~Gr~Lk 541 (943)
..++|||+|||+.+|+++|+++|+.||.+.|+..++. .+|.++.++.++|||||+|.+.++|..||.|||..|.|++|.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~-~~v~~~~~~~~~g~afV~F~~~~~A~~Al~l~g~~~~g~~i~ 81 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPG-NPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSLK 81 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSS-CSEEEEEEETTTTEEEEEESCSHHHHHHGGGTTEEETTEEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCC-CceEEeEecCCCCEEEEEeCCHHHHHHHHHhcCCEEcCceEE
Confidence 4689999999999999999999999998777654443 378899999999999999999999999999999999999999
Q ss_pred ccCCccc------------------------eeEEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEE
Q 002280 542 IKRPKEF------------------------VEVAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFI 595 (943)
Q Consensus 542 V~rp~d~------------------------~~~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFV 595 (943)
|.++..+ ...+|||+|||..+++++|+++|++||.|..|.++.+ ++.++|||||
T Consensus 82 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV 161 (198)
T 2yh0_A 82 IRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFC 161 (198)
T ss_dssp EECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEE
T ss_pred EeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEE
Confidence 9976543 1239999999999999999999999999999999988 4566999999
Q ss_pred eecChhHHHHHHHHhCCCccCCeEEEEEEcccCC
Q 002280 596 EYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDG 629 (943)
Q Consensus 596 eF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~ 629 (943)
+|.+.++|.+|+..|||..|+|+.|.|.+|.+..
T Consensus 162 ~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 162 EYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp EESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred EECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 9999999999999999999999999999997654
No 5
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.95 E-value=1.1e-27 Score=250.79 Aligned_cols=162 Identities=21% Similarity=0.288 Sum_probs=141.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcccccc
Q 002280 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~ 539 (943)
.+.++|||||||+.+|+++|+++|++||.+..+ ..+.+..++.++|||||+|.+.++|..||. +|+..+.|+.
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v------~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~ 86 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSI------RVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKP 86 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEE------EEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEE------EEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcc
Confidence 356799999999999999999999999854332 133444568889999999999999999999 9999999999
Q ss_pred ccccCCccce------eEEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCC
Q 002280 540 LKIKRPKEFV------EVAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGL 613 (943)
Q Consensus 540 LkV~rp~d~~------~~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~ 613 (943)
|++..+.... ..+|||+|||..+++++|+++|++||.|..|.|+.+.+.++|||||+|.+.++|.+|+..|||.
T Consensus 87 i~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~ 166 (213)
T 4f02_A 87 VRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGM 166 (213)
T ss_dssp CEEEECCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred cccccccccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCC
Confidence 9988654321 1289999999999999999999999999999999998778999999999999999999999999
Q ss_pred ccCCeEEEEEEcccC
Q 002280 614 KVGGQVLTAVQAVLD 628 (943)
Q Consensus 614 ~~~gr~L~V~~A~~~ 628 (943)
.|+|+.|.|.+|.+.
T Consensus 167 ~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 167 LLNDRKVFVGRFKSR 181 (213)
T ss_dssp EETTEECEEEECCCH
T ss_pred EECCEEEEEEEcCCC
Confidence 999999999998764
No 6
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.94 E-value=2e-26 Score=232.05 Aligned_cols=159 Identities=16% Similarity=0.233 Sum_probs=142.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHHccCCcccccc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSI 539 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~LnG~~l~Gr~ 539 (943)
....++|||+|||+.+|+++|+++|..||.+.++ .+.+..++.++|||||+|.+.++|..||+|||..|.|++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~-------~~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~ 82 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDL-------AVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNE 82 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTC-------CCCEEEEETTTTEEEEEESSHHHHHHHHHGGGEEETTEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceE-------EEEECCCCccccEEEEEECCHHHHHHHHhcCCCEeCCeE
Confidence 4567899999999999999999999999976552 567788999999999999999999999999999999999
Q ss_pred ccccCCccc------eeEEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCC
Q 002280 540 LKIKRPKEF------VEVAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGL 613 (943)
Q Consensus 540 LkV~rp~d~------~~~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~ 613 (943)
|.|.++... ...+|||+|||..+++++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|+..|||.
T Consensus 83 l~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~---~~~~~~~g~afV~f~~~~~A~~A~~~l~g~ 159 (175)
T 1fje_B 83 IKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV---SQDGKSKGIAYIEFKSEADAEKNLEEKQGA 159 (175)
T ss_dssp EEEECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE---CSSSSCCSEEEEECSSHHHHHHHHHHHTEE
T ss_pred EEEecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe---cCCCCCceEEEEEECCHHHHHHHHHHhCCC
Confidence 999976532 22399999999999999999999999988766 456778999999999999999999999999
Q ss_pred ccCCeEEEEEEcccC
Q 002280 614 KVGGQVLTAVQAVLD 628 (943)
Q Consensus 614 ~~~gr~L~V~~A~~~ 628 (943)
.|.|+.|.|.+|.+.
T Consensus 160 ~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 160 EIDGRSVSLYYTGEK 174 (175)
T ss_dssp EETTEEEEEEECSSC
T ss_pred EECCeEEEEEecCCC
Confidence 999999999998663
No 7
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.93 E-value=1.2e-25 Score=245.61 Aligned_cols=152 Identities=10% Similarity=0.020 Sum_probs=132.5
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCCCc
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGSI 631 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~~~ 631 (943)
+|||+|||..+++++|+++|+.||.|..|.|+.+...++|||||+|.+.++|.+|+. |||..|.|+.|.|.++
T Consensus 43 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~~------ 115 (292)
T 2ghp_A 43 TVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSHL------ 115 (292)
T ss_dssp EEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEEC------
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEEC------
Confidence 999999999999999999999999999999999877679999999999999999995 9999999999999864
Q ss_pred CCCCCCCCCCCCCCCcCCCCCCCceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhcCCC-CeEEEEEecCCCCCccee
Q 002280 632 MDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFG-SVKSVNVVKYGDSNISTI 710 (943)
Q Consensus 632 ~~~~~~~~~~~ip~~~~~~~~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskFG-~V~~V~I~r~~~g~~~G~ 710 (943)
+..+|+|.||....+. ++|+++|++|| .|..|.|+.+..+..+||
T Consensus 116 ----------------------~~~~l~v~nlp~~~t~------------~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~ 161 (292)
T 2ghp_A 116 ----------------------TECTLWMTNFPPSYTQ------------RNIRDLLQDINVVALSIRLPSLRFNTSRRF 161 (292)
T ss_dssp ----------------------CSCEEEEECCCTTCCH------------HHHHHHHHHTTCCCCEEECC-------CCE
T ss_pred ----------------------CCCEEEEECCCCCCCH------------HHHHHHHHHhCCCeEEEEEEeCCCCCcceE
Confidence 2567999999654332 68999999999 999999999887888999
Q ss_pred EEEEeCCHHHHHHHHHHhCCCccCCCceEEEEec
Q 002280 711 QACEGNENTASAGVGQNLTNDETNEKGERLEEVT 744 (943)
Q Consensus 711 ~FVeF~~~e~A~~Ai~~LnGr~~~~k~~~v~~~~ 744 (943)
|||+|.+.++|.+|+..|||..|.++.+.|..+.
T Consensus 162 afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 162 AYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp EEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred EEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 9999999999999999999999999998887654
No 8
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.93 E-value=2.9e-25 Score=241.56 Aligned_cols=149 Identities=14% Similarity=0.154 Sum_probs=133.4
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCCCc
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGSI 631 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~~~ 631 (943)
+|||+|||..+++++|+++|+.|| |..+.+ +.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.
T Consensus 24 ~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~----~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~----- 93 (284)
T 3smz_A 24 KILIRGLPGDVTNQEVHDLLSDYE-LKYCFV----DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP----- 93 (284)
T ss_dssp EEEEECCCTTCCHHHHHHHTTTSC-EEEEEE----ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC-----
T ss_pred EEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE----ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC-----
Confidence 899999999999999999999999 888887 3478999999999999999999999999999999998641
Q ss_pred CCCCCCCCCCCCCCCcCCCCCCCceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhcCCCCeEEEEEecC-CCCCccee
Q 002280 632 MDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKY-GDSNISTI 710 (943)
Q Consensus 632 ~~~~~~~~~~~ip~~~~~~~~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskFG~V~~V~I~r~-~~g~~~G~ 710 (943)
+..+|+|.||....+. ++|+++|++||.|..|.|+.+ ..|..+||
T Consensus 94 ----------------------~~~~l~v~nlp~~~t~------------~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~ 139 (284)
T 3smz_A 94 ----------------------TDALLCVANLPPSLTQ------------QQFEELVRPFGSLERCFLVYSERTGQSKGY 139 (284)
T ss_dssp ----------------------CSCEEEEESCCTTCCH------------HHHHHHHGGGSCEEEEEEEECTTTCCEEEE
T ss_pred ----------------------CCCEEEEcCCCCcCCH------------HHHHHHHHhcCCeeEEEEEeeCCCCccceE
Confidence 3467999999654332 689999999999999999876 47888999
Q ss_pred EEEEeCCHHHHHHHHHHhCCCccCCCceEEEEec
Q 002280 711 QACEGNENTASAGVGQNLTNDETNEKGERLEEVT 744 (943)
Q Consensus 711 ~FVeF~~~e~A~~Ai~~LnGr~~~~k~~~v~~~~ 744 (943)
|||+|.+.++|..|+..|||..|+++.+.+....
T Consensus 140 afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 140 GFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp EEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred EEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 9999999999999999999999999999887754
No 9
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.93 E-value=4.2e-26 Score=226.47 Aligned_cols=156 Identities=19% Similarity=0.249 Sum_probs=134.9
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccccccccc
Q 002280 464 RRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSILKI 542 (943)
Q Consensus 464 rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~LkV 542 (943)
|+|||+|||+.+|+++|+++|+.||.+..+ .+.....+.++|||||+|.+.++|..|+. |||..+.|+.|.|
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v-------~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v 73 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANI-------KIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKI 73 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEE-------EEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEE-------EEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEE
Confidence 689999999999999999999999853322 11111236688999999999999999997 9999999999999
Q ss_pred cCCccc------eeEEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCc
Q 002280 543 KRPKEF------VEVAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLK 614 (943)
Q Consensus 543 ~rp~d~------~~~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~ 614 (943)
..+... ...+|||+|||..+++++|+++|++||.|..+.++.+ ++.++|+|||+|.+.++|.+|+..|||..
T Consensus 74 ~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 153 (166)
T 3md3_A 74 NWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQD 153 (166)
T ss_dssp EECCCCCCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCE
T ss_pred EEcCCCCCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCc
Confidence 864322 2339999999999999999999999999999999887 45668999999999999999999999999
Q ss_pred cCCeEEEEEEcc
Q 002280 615 VGGQVLTAVQAV 626 (943)
Q Consensus 615 ~~gr~L~V~~A~ 626 (943)
|+|+.|.|.+|.
T Consensus 154 ~~g~~i~v~~a~ 165 (166)
T 3md3_A 154 LNGRPLRINWAA 165 (166)
T ss_dssp ETTEECEEEESC
T ss_pred cCCcEEEEEecC
Confidence 999999999884
No 10
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.93 E-value=9.6e-26 Score=234.41 Aligned_cols=163 Identities=24% Similarity=0.354 Sum_probs=140.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcccccc
Q 002280 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~ 539 (943)
...++|||+|||+.+|+++|+++|+.||.+..+ ..+.+..++.++|||||+|.+.++|..||. |||..|.|+.
T Consensus 26 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v------~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~ 99 (216)
T 2qfj_A 26 AIMSRVYVGSIYYELGEDTIRQAFAPFGPIKSI------DMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRN 99 (216)
T ss_dssp HHHTEEEEECCCTTCCHHHHHHHHGGGSCEEEE------EECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CC
T ss_pred CcCCEEEEECCCCCCCHHHHHHHHHhCCCEEEE------EEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCee
Confidence 346799999999999999999999999853332 122333467889999999999999999999 9999999999
Q ss_pred ccccCCcccee---------------EEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhH
Q 002280 540 LKIKRPKEFVE---------------VAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLV 602 (943)
Q Consensus 540 LkV~rp~d~~~---------------~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~ 602 (943)
|.|.++..... .+|||+|||..+++++|+++|++||.|..|.|+.+ ++.++|||||+|.+.++
T Consensus 100 l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~ 179 (216)
T 2qfj_A 100 IKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQS 179 (216)
T ss_dssp CEEECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHH
T ss_pred EEEecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHH
Confidence 99987654321 29999999999999999999999999999999987 45668999999999999
Q ss_pred HHHHHHHhCCCccCCeEEEEEEcccCC
Q 002280 603 TPKAIAGLNGLKVGGQVLTAVQAVLDG 629 (943)
Q Consensus 603 A~kAl~~LnG~~~~gr~L~V~~A~~~~ 629 (943)
|.+|+..|||..|+|+.|.|.+|.+..
T Consensus 180 A~~A~~~l~g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 180 SQDAVSSMNLFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp HHHHHHHHTTCBCSSSBCEEEECSSCS
T ss_pred HHHHHHHccCCEeCCcEEEEEEecCCC
Confidence 999999999999999999999987654
No 11
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.93 E-value=7.5e-26 Score=231.66 Aligned_cols=164 Identities=17% Similarity=0.286 Sum_probs=137.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHHccCCcccccc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSI 539 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~LnG~~l~Gr~ 539 (943)
....++|||+|||+.+|+++|+++|+.||.+..+ ..+.+..++.++|||||+|.+.++|..||.+++..|.|+.
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v------~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~g~~ 83 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDC------VVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRV 83 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEE------EEEECTTTCCEEEEEEEEESSHHHHHHHHHTCSCEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEE------EEEEcCCCCCccceEEEEeCCHHHHHHHHhcCCCEECCEE
Confidence 3457899999999999999999999999853321 1223334577899999999999999999999999999999
Q ss_pred ccccCCccce----------eEEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHH
Q 002280 540 LKIKRPKEFV----------EVAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAI 607 (943)
Q Consensus 540 LkV~rp~d~~----------~~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl 607 (943)
|.|.++.... ..+|||+|||..+++++|+++|+.||.|..|.|+.+ ++.++|||||+|.+.++|.+|+
T Consensus 84 l~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~ 163 (196)
T 1l3k_A 84 VEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV 163 (196)
T ss_dssp CEEEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHH
T ss_pred eeeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHH
Confidence 9998654321 128999999999999999999999999999999988 4567999999999999999999
Q ss_pred HHhCCCccCCeEEEEEEcccCCC
Q 002280 608 AGLNGLKVGGQVLTAVQAVLDGS 630 (943)
Q Consensus 608 ~~LnG~~~~gr~L~V~~A~~~~~ 630 (943)
.. +|..|.|+.|.|.+|.+...
T Consensus 164 ~~-~~~~~~G~~i~v~~a~~k~~ 185 (196)
T 1l3k_A 164 IQ-KYHTVNGHNCEVRKALSKQE 185 (196)
T ss_dssp HC-SCCEETTEECEEEECC----
T ss_pred Hh-CCcEECCEEEEEEecCChhH
Confidence 86 89999999999999977554
No 12
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.93 E-value=1.5e-25 Score=223.51 Aligned_cols=158 Identities=19% Similarity=0.288 Sum_probs=136.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccccccc
Q 002280 462 PMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSIL 540 (943)
Q Consensus 462 ~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~L 540 (943)
+.++|||+|||+.+|+++|+++|+.||.+..+ ..+.+..++.++|||||+|.+.++|..|+. |+|..+.|++|
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v------~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l 75 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTC------RIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRL 75 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEE------ECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEE------EEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEE
Confidence 35799999999999999999999999853322 123333467789999999999999999998 99999999999
Q ss_pred cccCCcc----ceeEEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecC--CCCCCEEEEeecChhHHHHHHHHhCCCc
Q 002280 541 KIKRPKE----FVEVAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLK 614 (943)
Q Consensus 541 kV~rp~d----~~~~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~--~~skG~aFVeF~~~e~A~kAl~~LnG~~ 614 (943)
.|.+... ....+|||+|||..+++++|+++|++||.|..+.++.+. +.++|+|||+|.+.++|.+|+..|||..
T Consensus 76 ~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 155 (168)
T 1b7f_A 76 KVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVI 155 (168)
T ss_dssp EEEECCCCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCC
T ss_pred EEEecCCCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCE
Confidence 9986442 223399999999999999999999999999999998874 5568999999999999999999999999
Q ss_pred cCC--eEEEEEEc
Q 002280 615 VGG--QVLTAVQA 625 (943)
Q Consensus 615 ~~g--r~L~V~~A 625 (943)
|.| ++|.|.+|
T Consensus 156 ~~g~~~~l~V~~A 168 (168)
T 1b7f_A 156 PEGGSQPLSVRLA 168 (168)
T ss_dssp CTTCSSCCEEEEC
T ss_pred ecCCCeEEEEEeC
Confidence 977 99999875
No 13
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.92 E-value=1.3e-25 Score=224.07 Aligned_cols=159 Identities=14% Similarity=0.221 Sum_probs=137.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHHccCCcccccccc
Q 002280 462 PMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSILK 541 (943)
Q Consensus 462 ~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~LnG~~l~Gr~Lk 541 (943)
+.++|||+|||+.+|+++|+++|+.||.+..+ ..+.+..++.++|||||+|.+.++|..|+. ++..+.|+.|.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v------~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~i~ 74 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDL------KIMKDPATGRSRGFGFLSFEKPSSVDEVVK-TQHILDGKVID 74 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEE------ECCCCTTTSSCCSCEEEEESSTHHHHHHHH-SCCEETTEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEE------EEEECCCCCCccceEEEEEccHHHHHHHHh-cccccCCeEcc
Confidence 46799999999999999999999999854332 123333567889999999999999999999 35789999999
Q ss_pred ccCCccc----eeEEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCcc
Q 002280 542 IKRPKEF----VEVAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKV 615 (943)
Q Consensus 542 V~rp~d~----~~~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~ 615 (943)
|.++... ...+|||+|||..+++++|+++|++||.|..+.++.+ ++.++|||||+|.+.++|.+|+. |+|..|
T Consensus 75 v~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~ 153 (167)
T 2cjk_A 75 PKRAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDF 153 (167)
T ss_dssp CEECCCHHHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECS
T ss_pred cccccchhhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEe
Confidence 8865432 2339999999999999999999999999999999887 46779999999999999999998 999999
Q ss_pred CCeEEEEEEcccC
Q 002280 616 GGQVLTAVQAVLD 628 (943)
Q Consensus 616 ~gr~L~V~~A~~~ 628 (943)
+|+.|.|.+|.|.
T Consensus 154 ~g~~i~V~~a~pk 166 (167)
T 2cjk_A 154 KDRKIEIKRAEPR 166 (167)
T ss_dssp SSSCEEEEECCCC
T ss_pred CCeEEEEeecCCC
Confidence 9999999998763
No 14
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.92 E-value=9.7e-25 Score=216.86 Aligned_cols=157 Identities=18% Similarity=0.351 Sum_probs=134.8
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcccccccc
Q 002280 463 MRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSILK 541 (943)
Q Consensus 463 ~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~Lk 541 (943)
.++|||+|||+.+|+++|+++|+.||.+..+ ..+.+..++.++|||||+|.+.++|..|+. |||..+.|++|.
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v------~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~ 75 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESC------KLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIK 75 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEE------EEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEE------EEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEE
Confidence 5799999999999999999999999853322 122333356778999999999999999999 999999999999
Q ss_pred ccCCccc----eeEEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecC--CCCCCEEEEeecChhHHHHHHHHhCCCcc
Q 002280 542 IKRPKEF----VEVAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKV 615 (943)
Q Consensus 542 V~rp~d~----~~~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~--~~skG~aFVeF~~~e~A~kAl~~LnG~~~ 615 (943)
|...... ...+|||+|||..+++++|+++|++||.|..+.++.+. +.++|+|||+|.+.++|.+|+..|||..|
T Consensus 76 v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 155 (167)
T 1fxl_A 76 VSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKP 155 (167)
T ss_dssp EEECCCCCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred EEecCCCcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCcc
Confidence 9865432 22389999999999999999999999999999998874 45689999999999999999999999999
Q ss_pred CCeE--EEEEEc
Q 002280 616 GGQV--LTAVQA 625 (943)
Q Consensus 616 ~gr~--L~V~~A 625 (943)
.|+. |.|.+|
T Consensus 156 ~g~~~~i~v~~A 167 (167)
T 1fxl_A 156 SGATEPITVKFA 167 (167)
T ss_dssp TTCSSCCEEEEC
T ss_pred CCCccceEEEeC
Confidence 9965 888765
No 15
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.92 E-value=1.7e-24 Score=216.99 Aligned_cols=158 Identities=18% Similarity=0.263 Sum_probs=131.0
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeee--cCCCeeeEEeCCHHHHHHHHH-ccCCccc--
Q 002280 462 PMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQ--REKGQAFVEFLTAEDASAALC-CDGCSFS-- 536 (943)
Q Consensus 462 ~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~--~skGyAFVeF~s~edA~~Al~-LnG~~l~-- 536 (943)
..++|||+|||+.+|+++|+++|++||.+..+ ..+.+..++ .++|||||+|.+.++|..|+. |||..+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v------~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~ 75 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEI------NVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPG 75 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEE------EEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTT
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEE------EEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccC
Confidence 35799999999999999999999999853321 122233333 789999999999999999999 9998765
Q ss_pred -cccccccCCcc-----ceeEEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec-CCCCCCEEEEeecChhHHHHHHHH
Q 002280 537 -GSILKIKRPKE-----FVEVAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN-EDHEEPCAFIEYVDQLVTPKAIAG 609 (943)
Q Consensus 537 -Gr~LkV~rp~d-----~~~~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d-~~~skG~aFVeF~~~e~A~kAl~~ 609 (943)
++.+.+..+.. ....+|||+|||..+++++|+++|++||.|..+.++.+ .+.++|||||+|.+.++|.+|+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~ 155 (175)
T 3nmr_A 76 MHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKA 155 (175)
T ss_dssp CSSCCEEEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred CccceEEccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHH
Confidence 46666654332 12339999999999999999999999999999999887 445689999999999999999999
Q ss_pred hCCCccC---CeEEEEEEc
Q 002280 610 LNGLKVG---GQVLTAVQA 625 (943)
Q Consensus 610 LnG~~~~---gr~L~V~~A 625 (943)
|||..+. +++|.|.+|
T Consensus 156 l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 156 MHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp HTTSCCCTTCSSCCEEEEC
T ss_pred hcCCcccCCCCCCeEEEec
Confidence 9998775 499999987
No 16
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.91 E-value=8e-24 Score=210.00 Aligned_cols=161 Identities=14% Similarity=0.166 Sum_probs=142.0
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecC-CCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCCC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE-DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGS 630 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~-~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~~ 630 (943)
+|||+|||..+++++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|.+|+..|||..+.|+.|.|.++.+...
T Consensus 2 ~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~~ 81 (166)
T 3md3_A 2 VLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQQ 81 (166)
T ss_dssp EEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCCC
T ss_pred EEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCCC
Confidence 79999999999999999999999999999998874 56789999999999999999999999999999999998855332
Q ss_pred cCCCCCCCCCCCCCCCcCCCCCCCceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhcCCCCeEEEEEecC-CCCCcce
Q 002280 631 IMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKY-GDSNIST 709 (943)
Q Consensus 631 ~~~~~~~~~~~~ip~~~~~~~~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskFG~V~~V~I~r~-~~g~~~G 709 (943)
. ...++.+|+|.||....+. ++|+++|++||.|..|.|+.+ ..+..+|
T Consensus 82 ~-------------------~~~~~~~l~v~nl~~~~t~------------~~l~~~f~~~G~i~~~~i~~~~~~~~~~g 130 (166)
T 3md3_A 82 S-------------------SSDDTFNLFVGDLNVNVDD------------ETLRNAFKDFPSYLSGHVMWDMQTGSSRG 130 (166)
T ss_dssp C-------------------CCTTCEEEEEESCCTTCCH------------HHHHHHHTTSTTEEEEEEEECTTTCCEEE
T ss_pred C-------------------CCCCCceEEECCCCCCCCH------------HHHHHHHhccCCeeEEEEEecCCCCCcce
Confidence 1 1346789999999654332 689999999999999999987 5678899
Q ss_pred eEEEEeCCHHHHHHHHHHhCCCccCCCceEEEEe
Q 002280 710 IQACEGNENTASAGVGQNLTNDETNEKGERLEEV 743 (943)
Q Consensus 710 ~~FVeF~~~e~A~~Ai~~LnGr~~~~k~~~v~~~ 743 (943)
+|||+|.+.++|.+|+..|||..|+++.+.|..+
T Consensus 131 ~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 164 (166)
T 3md3_A 131 YGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 164 (166)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred EEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEec
Confidence 9999999999999999999999999999988764
No 17
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.91 E-value=1.3e-23 Score=209.41 Aligned_cols=158 Identities=14% Similarity=0.205 Sum_probs=139.3
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDG 629 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~ 629 (943)
+|||+|||..+++++|+++|+.||.|..|.++.+ ++.++|||||+|.+.++|.+|+..|+|..+.|+.|.|.++.+..
T Consensus 5 ~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~ 84 (168)
T 1b7f_A 5 NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGG 84 (168)
T ss_dssp EEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCCc
Confidence 8999999999999999999999999999999887 45578999999999999999999999999999999999886533
Q ss_pred CcCCCCCCCCCCCCCCCcCCCCCCCceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhcCCCCeEEEEEecCC-CCCcc
Q 002280 630 SIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYG-DSNIS 708 (943)
Q Consensus 630 ~~~~~~~~~~~~~ip~~~~~~~~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskFG~V~~V~I~r~~-~g~~~ 708 (943)
. ..+..+|+|.||....+. ++|+++|++||.|..|.|+++. .+..+
T Consensus 85 ~---------------------~~~~~~l~v~nl~~~~t~------------~~l~~~f~~~G~i~~~~i~~~~~~~~~~ 131 (168)
T 1b7f_A 85 E---------------------SIKDTNLYVTNLPRTITD------------DQLDTIFGKYGSIVQKNILRDKLTGRPR 131 (168)
T ss_dssp S---------------------TTTTCEEEEESCCTTCCH------------HHHHHHHTSSSCEEEEEEEECTTTCCEE
T ss_pred c---------------------cCCCCCEEEeCCCCCCCH------------HHHHHhhhcCCcEEEEEEEEcCCCCCcc
Confidence 2 235678999999753332 6899999999999999999885 78889
Q ss_pred eeEEEEeCCHHHHHHHHHHhCCCccCC--CceEEEE
Q 002280 709 TIQACEGNENTASAGVGQNLTNDETNE--KGERLEE 742 (943)
Q Consensus 709 G~~FVeF~~~e~A~~Ai~~LnGr~~~~--k~~~v~~ 742 (943)
|+|||+|.+.++|.+|+..|||..|.+ +.+.|..
T Consensus 132 g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~ 167 (168)
T 1b7f_A 132 GVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRL 167 (168)
T ss_dssp EEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred eEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEe
Confidence 999999999999999999999999987 6666643
No 18
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.91 E-value=1.5e-23 Score=208.33 Aligned_cols=158 Identities=10% Similarity=0.175 Sum_probs=138.6
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDG 629 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~ 629 (943)
+|||+|||..+++++|+++|+.||.|..+.++.+ ++.++|||||+|.+.++|.+|+..|||..+.|+.|.|.++.+..
T Consensus 4 ~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~ 83 (167)
T 1fxl_A 4 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSS 83 (167)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCCc
Confidence 7999999999999999999999999999999887 45668999999999999999999999999999999999886533
Q ss_pred CcCCCCCCCCCCCCCCCcCCCCCCCceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhcCCCCeEEEEEecCC-CCCcc
Q 002280 630 SIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYG-DSNIS 708 (943)
Q Consensus 630 ~~~~~~~~~~~~~ip~~~~~~~~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskFG~V~~V~I~r~~-~g~~~ 708 (943)
. ..+...|+|.||....+. ++|+++|++||.|..|.|+.+. .|..+
T Consensus 84 ~---------------------~~~~~~l~v~nl~~~~t~------------~~l~~~f~~~G~i~~~~i~~~~~~g~~~ 130 (167)
T 1fxl_A 84 A---------------------SIRDANLYVSGLPKTMTQ------------KELEQLFSQYGRIITSRILVDQVTGVSR 130 (167)
T ss_dssp G---------------------GGTTCEEEEESCCTTCCH------------HHHHHHHGGGSCEEEEEEEECTTTCCEE
T ss_pred c---------------------cCCCCcEEECCCCCcCCH------------HHHHHHHHhcCCEeEEEEEecCCCCCcc
Confidence 2 124577999999654332 6899999999999999999875 67789
Q ss_pred eeEEEEeCCHHHHHHHHHHhCCCccCCCceEEEE
Q 002280 709 TIQACEGNENTASAGVGQNLTNDETNEKGERLEE 742 (943)
Q Consensus 709 G~~FVeF~~~e~A~~Ai~~LnGr~~~~k~~~v~~ 742 (943)
|||||+|.+.++|.+|+..|||..|.++.+.|..
T Consensus 131 g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v 164 (167)
T 1fxl_A 131 GVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 164 (167)
T ss_dssp EEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred ceEEEEeCCHHHHHHHHHHhcCCccCCCccceEE
Confidence 9999999999999999999999999998755433
No 19
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.91 E-value=5.3e-24 Score=222.74 Aligned_cols=161 Identities=13% Similarity=0.155 Sum_probs=140.2
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDG 629 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~ 629 (943)
+|||+|||+.+++++|+++|++||.|..|+|+++ ++.++|||||+|.+.++|.+|+..|||..+.|+.|.+.++....
T Consensus 17 tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~ 96 (213)
T 4f02_A 17 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDP 96 (213)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCT
T ss_pred EEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccccccc
Confidence 8999999999999999999999999999999987 45678999999999999999999999999999999998774432
Q ss_pred CcCCCCCCCCCCCCCCCcCCCCCCCceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCcce
Q 002280 630 SIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYGDSNIST 709 (943)
Q Consensus 630 ~~~~~~~~~~~~~ip~~~~~~~~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskFG~V~~V~I~r~~~g~~~G 709 (943)
... ......|+|.||....+. ++|+++|++||.|+.|.|+++.. ..+|
T Consensus 97 ~~~-------------------~~~~~~l~v~nl~~~~t~------------~~l~~~F~~~G~i~~~~i~~d~~-~~~g 144 (213)
T 4f02_A 97 SLR-------------------KSGVGNIFIKNLDKSIDN------------KALYDTFSAFGNILSCKVVCDEN-GSKG 144 (213)
T ss_dssp HHH-------------------HHCTTEEEEESCCTTCCH------------HHHHHHHGGGSCEEEEEEEEETT-EEEE
T ss_pred ccc-------------------ccccccceECCcccccHH------------HHHHHHHhhcCCeEEEEeeccCC-CCce
Confidence 210 123457999999653332 68999999999999999998754 4689
Q ss_pred eEEEEeCCHHHHHHHHHHhCCCccCCCceEEEEec
Q 002280 710 IQACEGNENTASAGVGQNLTNDETNEKGERLEEVT 744 (943)
Q Consensus 710 ~~FVeF~~~e~A~~Ai~~LnGr~~~~k~~~v~~~~ 744 (943)
||||+|.+.++|.+|+..|||..|+++.+.|....
T Consensus 145 ~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 145 YGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp EEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred EEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 99999999999999999999999999999997764
No 20
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.90 E-value=1.2e-23 Score=219.37 Aligned_cols=152 Identities=12% Similarity=0.094 Sum_probs=128.9
Q ss_pred CCCeEEEcCCC-CCCCHHHHHHHHHhhhhccCcccccCCcceeeeeee-cCCCeeeEEeCCHHHHHHHHH-ccCCccccc
Q 002280 462 PMRRLCVENLP-LSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQ-REKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (943)
Q Consensus 462 ~~rtLfVgNLP-~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~-~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr 538 (943)
+..+|||+||| +.+|+++|+++|.+||. |.++.+- ..+|||||+|.+.++|..||. |||..|.|+
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~------------v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 70 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGN------------VEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFGQ 70 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSC------------EEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCC------------eEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 46799999999 89999999999999884 4444433 358999999999999999999 999999999
Q ss_pred cccccCCcc--------------------c---------------------eeEEEEEecCCCCCCHHHHHHHHhhcCCe
Q 002280 539 ILKIKRPKE--------------------F---------------------VEVAIFIGGISRTLSSKMVMEIVCAFGPL 577 (943)
Q Consensus 539 ~LkV~rp~d--------------------~---------------------~~~~LfV~NLp~~~teedL~e~Fs~fG~I 577 (943)
+|.|...+. + ...+|||+|||+.+++++|+++|++||.|
T Consensus 71 ~l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v 150 (205)
T 3tyt_A 71 KMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVK 150 (205)
T ss_dssp ECEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCC
T ss_pred eEEEEEccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCc
Confidence 999884320 0 01179999999999999999999999999
Q ss_pred --eEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCe----EEEEEEc
Q 002280 578 --KAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQ----VLTAVQA 625 (943)
Q Consensus 578 --~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr----~L~V~~A 625 (943)
..++++.+.+..+|+|||+|.+.++|.+||..|||..|.|. ++.|.+|
T Consensus 151 ~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 151 RPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp CCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred ceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 88998877655679999999999999999999999999876 4555543
No 21
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.90 E-value=2.3e-23 Score=226.32 Aligned_cols=155 Identities=20% Similarity=0.288 Sum_probs=132.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCc
Q 002280 460 NRPMRRLCVENLPLSASEKALM----EFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCS 534 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~----elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~ 534 (943)
..+.++|||+|||+.+|+++|+ ++|..||.+.. |.-..++.++|||||+|.+.++|..||. |||..
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~---------v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 76 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILD---------ILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFP 76 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEE---------EEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCe
Confidence 4668999999999999999977 88888874322 1111267899999999999999999997 99999
Q ss_pred cccccccccCCccce-----------------------------------------------------------------
Q 002280 535 FSGSILKIKRPKEFV----------------------------------------------------------------- 549 (943)
Q Consensus 535 l~Gr~LkV~rp~d~~----------------------------------------------------------------- 549 (943)
|.|+.|+|.+.....
T Consensus 77 ~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (282)
T 3pgw_A 77 FYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHH 156 (282)
T ss_pred eCCcEEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCccccccccccc
Confidence 999999987432110
Q ss_pred --------------------------------------------------eEEEEEecCCCCCCHHHHHHHHhhcCCeeE
Q 002280 550 --------------------------------------------------EVAIFIGGISRTLSSKMVMEIVCAFGPLKA 579 (943)
Q Consensus 550 --------------------------------------------------~~~LfV~NLp~~~teedL~e~Fs~fG~I~~ 579 (943)
..+|||+|||..+++++|+++|++||.|..
T Consensus 157 ~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~ 236 (282)
T 3pgw_A 157 MPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKE 236 (282)
T ss_pred CCCCCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEE
Confidence 126999999999999999999999999999
Q ss_pred EEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccC-CeEEEEEEcc
Q 002280 580 YHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVG-GQVLTAVQAV 626 (943)
Q Consensus 580 v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~-gr~L~V~~A~ 626 (943)
|.|+.+ .+|||||+|.+.++|.+|+..|||..|. |+.|.|.+|.
T Consensus 237 v~~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 237 VRLVPG---RHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred EEEecC---CCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 999865 3699999999999999999999999999 9999999874
No 22
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.90 E-value=4.2e-23 Score=218.32 Aligned_cols=152 Identities=17% Similarity=0.211 Sum_probs=132.6
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecC-CCeeeEEeCCHHHHHHHHH-ccCCcccc
Q 002280 461 RPMRRLCVENLPL-SASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQRE-KGQAFVEFLTAEDASAALC-CDGCSFSG 537 (943)
Q Consensus 461 ~~~rtLfVgNLP~-~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~s-kGyAFVeF~s~edA~~Al~-LnG~~l~G 537 (943)
.+.++|||+|||+ .+|+++|+++|+.||. |..+.+... +|||||+|.+.++|..|+. |||..|.|
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~------------i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g 99 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGD------------VQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHG 99 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTC------------EEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSS
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCC------------eEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 4578999999999 9999999999999984 344444332 7999999999999999998 99999999
Q ss_pred ccccccCCccc---------------------------------------eeEEEEEecCCCCCCHHHHHHHHhhcC-Ce
Q 002280 538 SILKIKRPKEF---------------------------------------VEVAIFIGGISRTLSSKMVMEIVCAFG-PL 577 (943)
Q Consensus 538 r~LkV~rp~d~---------------------------------------~~~~LfV~NLp~~~teedL~e~Fs~fG-~I 577 (943)
+.|.|...... ...+|||+|||..+++++|+++|++|| .|
T Consensus 100 ~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i 179 (229)
T 2adc_A 100 KPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVV 179 (229)
T ss_dssp SBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCE
T ss_pred eEEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCe
Confidence 99999743211 012899999999999999999999999 99
Q ss_pred eEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccC-CeEEEEEEccc
Q 002280 578 KAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVG-GQVLTAVQAVL 627 (943)
Q Consensus 578 ~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~-gr~L~V~~A~~ 627 (943)
..|.|+.. ++|+|||+|.+.++|.+|+..|||..|. |+.|.|.++.+
T Consensus 180 ~~v~i~~~---~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 180 KGFKFFQK---DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp EEEEECSS---STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred eEEEEEEC---CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 99998654 5899999999999999999999999999 99999999865
No 23
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.90 E-value=1.9e-23 Score=225.30 Aligned_cols=154 Identities=19% Similarity=0.267 Sum_probs=137.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcccccc
Q 002280 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~ 539 (943)
...++|||+|||+.+|+++|+++|+.|| .|..+.++.++|||||+|.+.++|..|+. |||..|.|+.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G------------~i~~v~i~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~ 87 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYG------------EPSEVFINRDRGFGFIRLESRTLAEIAKAELDGTILKSRP 87 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGC------------CCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcC------------CEEEEEEeCCCcEEEEEECCHHHHHHHHHHcCCcEECCce
Confidence 4467999999999999999999999988 45667778889999999999999999999 9999999999
Q ss_pred ccccCCccceeEEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec-CCCCCCEEEEeecChhHHHHHHHHhC-CCccC-
Q 002280 540 LKIKRPKEFVEVAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN-EDHEEPCAFIEYVDQLVTPKAIAGLN-GLKVG- 616 (943)
Q Consensus 540 LkV~rp~d~~~~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d-~~~skG~aFVeF~~~e~A~kAl~~Ln-G~~~~- 616 (943)
|.|..... ..+|||+|||..+++++|+++|+.||.|..|.|+.+ ++.++|||||+|.+.++|.+|+..|| |..+.
T Consensus 88 l~v~~a~~--~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~ 165 (261)
T 3sde_A 88 LRIRFATH--GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLT 165 (261)
T ss_dssp CEEEECCC--SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESS
T ss_pred eEeeeccc--CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEec
Confidence 99987654 238999999999999999999999999999999888 45679999999999999999999995 55544
Q ss_pred --CeEEEEEEcccC
Q 002280 617 --GQVLTAVQAVLD 628 (943)
Q Consensus 617 --gr~L~V~~A~~~ 628 (943)
+++|.|.++.+.
T Consensus 166 ~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 166 TTPRPVIVEPMEQF 179 (261)
T ss_dssp SSCCBCEEEECCCE
T ss_pred CCCceEEEeecccc
Confidence 999999988654
No 24
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.90 E-value=8.7e-23 Score=204.54 Aligned_cols=159 Identities=14% Similarity=0.189 Sum_probs=136.3
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCC----CCCCEEEEeecChhHHHHHHHHhCCCccC---CeEEEEEE
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNED----HEEPCAFIEYVDQLVTPKAIAGLNGLKVG---GQVLTAVQ 624 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~----~skG~aFVeF~~~e~A~kAl~~LnG~~~~---gr~L~V~~ 624 (943)
+|||+|||..+++++|+++|++||.|..|.|+.+.. .++|||||+|.+.++|.+|+..|||..+. ++.+.+.+
T Consensus 5 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~ 84 (175)
T 3nmr_A 5 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKP 84 (175)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEcc
Confidence 899999999999999999999999999999998843 46899999999999999999999998775 57777776
Q ss_pred cccCCCcCCCCCCCCCCCCCCCcCCCCCCCceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhcCCCCeEEEEEecCCC
Q 002280 625 AVLDGSIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYGD 704 (943)
Q Consensus 625 A~~~~~~~~~~~~~~~~~ip~~~~~~~~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskFG~V~~V~I~r~~~ 704 (943)
+.+.... ..+.+.|+|.||....+. ++|+++|++||.|+.|.|+++..
T Consensus 85 ~~~~~~~--------------------~~~~~~l~v~nl~~~~t~------------~~l~~~F~~~G~i~~v~~~~~~~ 132 (175)
T 3nmr_A 85 ADSEKNN--------------------AVEDRKLFIGMISKKCTE------------NDIRVMFSSFGQIEECRILRGPD 132 (175)
T ss_dssp CGGGCCS--------------------CGGGSEEEEESCCTTCCH------------HHHHHHHGGGSCEEEEEEEECTT
T ss_pred ccccccc--------------------cCCCCeEEEcCCCCcCCH------------HHHHHHHHhCCCEEEEEEEECCC
Confidence 6443221 234678999999654332 68999999999999999999988
Q ss_pred CCcceeEEEEeCCHHHHHHHHHHhCCCccCC---CceEEEE
Q 002280 705 SNISTIQACEGNENTASAGVGQNLTNDETNE---KGERLEE 742 (943)
Q Consensus 705 g~~~G~~FVeF~~~e~A~~Ai~~LnGr~~~~---k~~~v~~ 742 (943)
|..+|||||+|.+.++|.+|+..|||..+.+ +.+.|..
T Consensus 133 g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ 173 (175)
T 3nmr_A 133 GLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKF 173 (175)
T ss_dssp SCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEE
T ss_pred CCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEe
Confidence 8899999999999999999999999998874 6777654
No 25
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.90 E-value=1.1e-22 Score=211.34 Aligned_cols=173 Identities=15% Similarity=0.209 Sum_probs=143.2
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDG 629 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~ 629 (943)
+|||+|||..+++++|+++|+.||.|..|.|+.+ ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++....
T Consensus 30 ~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~ 109 (216)
T 2qfj_A 30 RVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIG 109 (216)
T ss_dssp EEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCCG
T ss_pred EEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCcc
Confidence 8999999999999999999999999999999887 45679999999999999999999999999999999998764432
Q ss_pred CcCCCCCCCCCCCCCCCcCCCCCCCceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhcCCCCeEEEEEecC-CCCCcc
Q 002280 630 SIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKY-GDSNIS 708 (943)
Q Consensus 630 ~~~~~~~~~~~~~ip~~~~~~~~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskFG~V~~V~I~r~-~~g~~~ 708 (943)
...... ........+..+|+|.||....+ .++|+++|++||.|+.|.|+.+ ..+..+
T Consensus 110 ~~~~~~----------~~~~~~~~~~~~l~v~nlp~~~t------------~~~l~~~f~~~G~v~~v~i~~~~~~g~~~ 167 (216)
T 2qfj_A 110 QAQPII----------DQLAEEARAFNRIYVASVHQDLS------------DDDIKSVFEAFGKIKSATLARDPTTGKHK 167 (216)
T ss_dssp GGHHHH----------HHHHHHHTTSCEEEEECCCTTCC------------HHHHHHHHTTSSCEEEEEEEECTTTCCEE
T ss_pred ccchhh----------hhhhcccCCCcEEEEeCCCCcCC------------HHHHHHHHhccCCeeEEEEEecCCCCCcC
Confidence 110000 00000124568999999965433 2689999999999999999987 467889
Q ss_pred eeEEEEeCCHHHHHHHHHHhCCCccCCCceEEEEeccc
Q 002280 709 TIQACEGNENTASAGVGQNLTNDETNEKGERLEEVTDH 746 (943)
Q Consensus 709 G~~FVeF~~~e~A~~Ai~~LnGr~~~~k~~~v~~~~~~ 746 (943)
|||||+|.+.++|.+|+..|||..|+++.+.|..+...
T Consensus 168 g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~ 205 (216)
T 2qfj_A 168 GYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTP 205 (216)
T ss_dssp EEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEECSSC
T ss_pred ceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEecCC
Confidence 99999999999999999999999999999999887653
No 26
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.89 E-value=3.3e-23 Score=213.12 Aligned_cols=150 Identities=17% Similarity=0.217 Sum_probs=130.3
Q ss_pred CCeEEEcCCCC-CCCHHHHHHHHHhhhhccCcccccCCcceeeeeeec-CCCeeeEEeCCHHHHHHHHH-ccCCcccccc
Q 002280 463 MRRLCVENLPL-SASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQR-EKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (943)
Q Consensus 463 ~rtLfVgNLP~-~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~-skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~ 539 (943)
.++|||+|||+ .+|+++|+++|+.||.+ ..+.+.. .+|||||+|.+.++|..|+. |||..|.|++
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i------------~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~ 70 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDV------------QRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHGKP 70 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCC------------SEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSSCC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCE------------EEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecCeE
Confidence 57999999999 99999999999998843 3333322 27999999999999999999 9999999999
Q ss_pred ccccCCccc---------------------------------------eeEEEEEecCCCCCCHHHHHHHHhhcC-CeeE
Q 002280 540 LKIKRPKEF---------------------------------------VEVAIFIGGISRTLSSKMVMEIVCAFG-PLKA 579 (943)
Q Consensus 540 LkV~rp~d~---------------------------------------~~~~LfV~NLp~~~teedL~e~Fs~fG-~I~~ 579 (943)
|.|...... ...+|||+|||..+++++|+++|++|| .|..
T Consensus 71 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~ 150 (198)
T 1qm9_A 71 IRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKG 150 (198)
T ss_dssp CEEEECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCE
T ss_pred EEEEEecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceE
Confidence 999633210 022899999999999999999999999 9999
Q ss_pred EEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccC-CeEEEEEEccc
Q 002280 580 YHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVG-GQVLTAVQAVL 627 (943)
Q Consensus 580 v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~-gr~L~V~~A~~ 627 (943)
|.|+.+ .+|+|||+|.+.++|.+|+..|||..|+ |+.|.|.++.+
T Consensus 151 v~i~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 151 FKFFQK---DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp EEESST---TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred EEEEeC---CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence 998664 4899999999999999999999999999 99999999865
No 27
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.89 E-value=1.9e-22 Score=206.29 Aligned_cols=166 Identities=12% Similarity=0.168 Sum_probs=138.5
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecC--CCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDG 629 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~--~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~ 629 (943)
+|||+|||..+++++|+++|+.||.|..|.|+.+. +.++|||||+|.+.++|.+|+.. +|..|.|+.|.|.++.+..
T Consensus 15 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~~~~~ 93 (196)
T 1l3k_A 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSRE 93 (196)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEECCC--
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecccCcc
Confidence 99999999999999999999999999999999873 55789999999999999999975 9999999999999886543
Q ss_pred CcCCCCCCCCCCCCCCCcCCCCCCCceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhcCCCCeEEEEEecCC-CCCcc
Q 002280 630 SIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYG-DSNIS 708 (943)
Q Consensus 630 ~~~~~~~~~~~~~ip~~~~~~~~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskFG~V~~V~I~r~~-~g~~~ 708 (943)
.... +....+.++|+|.||....+ .++|+++|++||.|+.|.|+.+. .+..+
T Consensus 94 ~~~~---------------~~~~~~~~~l~V~nLp~~~t------------~~~l~~~F~~~G~i~~v~i~~~~~~g~~~ 146 (196)
T 1l3k_A 94 DSQR---------------PGAHLTVKKIFVGGIKEDTE------------EHHLRDYFEQYGKIEVIEIMTDRGSGKKR 146 (196)
T ss_dssp ------------------------CCSEEEEECCTTTCC------------HHHHHHHHTTTSCEEEEEEEECTTTCCEE
T ss_pred cccc---------------cccCCCcceEEEeCCCCCCC------------HHHHHHHHhcCCCeEEEEEeecCCCCCcc
Confidence 2110 11124568899999965333 26899999999999999999874 67889
Q ss_pred eeEEEEeCCHHHHHHHHHHhCCCccCCCceEEEEeccc
Q 002280 709 TIQACEGNENTASAGVGQNLTNDETNEKGERLEEVTDH 746 (943)
Q Consensus 709 G~~FVeF~~~e~A~~Ai~~LnGr~~~~k~~~v~~~~~~ 746 (943)
|||||+|.+.++|.+|+.. +|..|+++.+.|..+...
T Consensus 147 g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k 183 (196)
T 1l3k_A 147 GFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSK 183 (196)
T ss_dssp EEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC--
T ss_pred ceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCCh
Confidence 9999999999999999987 799999999999887653
No 28
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.89 E-value=2e-22 Score=210.12 Aligned_cols=171 Identities=18% Similarity=0.221 Sum_probs=135.0
Q ss_pred EEEEecCC-CCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCCC
Q 002280 552 AIFIGGIS-RTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGS 630 (943)
Q Consensus 552 ~LfV~NLp-~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~~ 630 (943)
+|||+||| ..+++++|+++|++||.|..|+|+++ .+|||||+|.+.++|.+|+..|||..|.|+.|.|.++.....
T Consensus 6 ~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~---~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~~~ 82 (205)
T 3tyt_A 6 VLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS---KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQPAI 82 (205)
T ss_dssp EEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT---STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSCC
T ss_pred EEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC---CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCCcc
Confidence 89999999 89999999999999999999999875 589999999999999999999999999999999999864332
Q ss_pred cCCC-----CCCC---CCCCCCC--------CcCCCCCCCceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhcCCCCe
Q 002280 631 IMDN-----SGNP---PFHGIPK--------HALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSV 694 (943)
Q Consensus 631 ~~~~-----~~~~---~~~~ip~--------~~~~~~~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskFG~V 694 (943)
.... .+.. .+.+.+. ........|+++|+|.||....+. ++|+++|++||.|
T Consensus 83 ~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~------------~~L~~~F~~~G~v 150 (205)
T 3tyt_A 83 MPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTE------------ENFFEICDELGVK 150 (205)
T ss_dssp CCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCH------------HHHHHHHHHHTCC
T ss_pred CCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCH------------HHHHHHHHhcCCc
Confidence 1100 0000 0000000 000112357889999999653332 6899999999999
Q ss_pred --EEEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCce
Q 002280 695 --KSVNVVKYGDSNISTIQACEGNENTASAGVGQNLTNDETNEKGE 738 (943)
Q Consensus 695 --~~V~I~r~~~g~~~G~~FVeF~~~e~A~~Ai~~LnGr~~~~k~~ 738 (943)
.+|.|+.+. +..+|+|||+|.+.++|.+|+..|||..|.+...
T Consensus 151 ~~~~v~~~~~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~ 195 (205)
T 3tyt_A 151 RPTSVKVFSGK-SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNG 195 (205)
T ss_dssp CCSEEEECSCC-SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSS
T ss_pred ceEEEEEEcCC-CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCC
Confidence 899998765 4556999999999999999999999999987753
No 29
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.88 E-value=8e-22 Score=201.97 Aligned_cols=176 Identities=19% Similarity=0.242 Sum_probs=141.0
Q ss_pred EEEEecCCCCCCHHHHHHHHhhc----C-------CeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEE
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAF----G-------PLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVL 620 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~f----G-------~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L 620 (943)
+|||+|||..+++++|+++|+.| | .|..+.+. .++|||||+|.+.++|.+|+ .|||..|.|+.|
T Consensus 6 ~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~----~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i 80 (198)
T 2yh0_A 6 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN----QDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 80 (198)
T ss_dssp EEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE----TTTTEEEEEESCSHHHHHHG-GGTTEEETTEEE
T ss_pred EEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec----CCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceE
Confidence 89999999999999999999999 5 56666553 36899999999999999999 899999999999
Q ss_pred EEEEcccCCCcCCCCCCCCCCCCCCCcCCCCCCCceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhcCCCCeEEEEEe
Q 002280 621 TAVQAVLDGSIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVV 700 (943)
Q Consensus 621 ~V~~A~~~~~~~~~~~~~~~~~ip~~~~~~~~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskFG~V~~V~I~ 700 (943)
.|.++.+.......... +....+.........+..+|+|.||....+. ++|+++|++||.|..|.|+
T Consensus 81 ~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~------------~~l~~~f~~~G~v~~~~~~ 147 (198)
T 2yh0_A 81 KIRRPHDYQPLPGMSEN-PSVYVPGVVSTVVPDSAHKLFIGGLPNYLND------------DQVKELLTSFGPLKAFNLV 147 (198)
T ss_dssp EEECCCCCCCCCCSSSC-SSCCCTTSSCCCSSCCCCEEEEECCCTTCCH------------HHHHHHHHTBSCEEEEEEE
T ss_pred EEeCCCCCCCCCCCcCC-CcCCCCCCccCCCCCCCCEEEEeCCCCCCCH------------HHHHHHHHHcCCccEEEEe
Confidence 99988654332211111 1111111112223457889999999763332 6899999999999999999
Q ss_pred cCC-CCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCceEEEEecc
Q 002280 701 KYG-DSNISTIQACEGNENTASAGVGQNLTNDETNEKGERLEEVTD 745 (943)
Q Consensus 701 r~~-~g~~~G~~FVeF~~~e~A~~Ai~~LnGr~~~~k~~~v~~~~~ 745 (943)
.+. .+..+|||||+|.+.++|.+|+..|||..|+++.+.|..+..
T Consensus 148 ~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 193 (198)
T 2yh0_A 148 KDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASV 193 (198)
T ss_dssp ECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred ecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 885 788899999999999999999999999999999999987654
No 30
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.88 E-value=5e-22 Score=198.89 Aligned_cols=154 Identities=19% Similarity=0.238 Sum_probs=133.8
Q ss_pred EEEEecCCCCCCHHHHHHHHhhc----C-------CeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEE
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAF----G-------PLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVL 620 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~f----G-------~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L 620 (943)
+|||+|||..+++++|+++|++| | .|..+.+.. ++|||||+|.+.++|.+|+ .|||..|.|+.|
T Consensus 6 ~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~----~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i 80 (172)
T 2g4b_A 6 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ----DKNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 80 (172)
T ss_dssp EEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET----TTTEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred EEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC----CCCEEEEEeCCHHHHHHHH-HhCCcEecCcee
Confidence 89999999999999999999999 6 677776643 5899999999999999999 899999999999
Q ss_pred EEEEcccCCCcCCCCCCCCCCCCCCCcCCCCCCCceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhcCCCCeEEEEEe
Q 002280 621 TAVQAVLDGSIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVV 700 (943)
Q Consensus 621 ~V~~A~~~~~~~~~~~~~~~~~ip~~~~~~~~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskFG~V~~V~I~ 700 (943)
.|.++.+... ..+..+|+|.||....+. ++|+++|++||.|..|.|+
T Consensus 81 ~v~~~~~~~~---------------------~~~~~~l~v~nlp~~~t~------------~~l~~~f~~~G~v~~v~i~ 127 (172)
T 2g4b_A 81 KIRRPHDYQP---------------------LPGAHKLFIGGLPNYLND------------DQVKELLTSFGPLKAFNLV 127 (172)
T ss_dssp EEECCSSCCC---------------------CTTTTCEEEECCCTTCCH------------HHHHHHHHTTSCEEEEEEE
T ss_pred eecCCcccCC---------------------CCCCCEEEEEcCCCcCCH------------HHHHHHHHhcCCceEEEEE
Confidence 9987543221 123677999999764332 6899999999999999999
Q ss_pred cCC-CCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCceEEEEe
Q 002280 701 KYG-DSNISTIQACEGNENTASAGVGQNLTNDETNEKGERLEEV 743 (943)
Q Consensus 701 r~~-~g~~~G~~FVeF~~~e~A~~Ai~~LnGr~~~~k~~~v~~~ 743 (943)
.+. .|..+|||||+|.+.++|.+|+..|||..|+++.+.|..+
T Consensus 128 ~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 128 KDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp ECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred ecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 884 7888999999999999999999999999999999988764
No 31
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.87 E-value=1.8e-22 Score=201.16 Aligned_cols=157 Identities=10% Similarity=0.145 Sum_probs=136.9
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDG 629 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~ 629 (943)
+|||+|||..+++++|+++|+.||.|..|.|+.+ ++.++|||||+|.+.++|.+|+.. +..+.|+.|.|.++.+..
T Consensus 5 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~~~~ 82 (167)
T 2cjk_A 5 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAIPRD 82 (167)
T ss_dssp EEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECCCHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccccchh
Confidence 8999999999999999999999999999999887 467899999999999999999984 678999999988775422
Q ss_pred CcCCCCCCCCCCCCCCCcCCCCCCCceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhcCCCCeEEEEEecC-CCCCcc
Q 002280 630 SIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKY-GDSNIS 708 (943)
Q Consensus 630 ~~~~~~~~~~~~~ip~~~~~~~~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskFG~V~~V~I~r~-~~g~~~ 708 (943)
. ..++..|+|.||....+. ++|+++|++||.|..|.|+.+ ..|..+
T Consensus 83 ~---------------------~~~~~~l~V~nlp~~~t~------------~~l~~~F~~~G~i~~~~i~~~~~~g~~~ 129 (167)
T 2cjk_A 83 E---------------------QDKTGKIFVGGIGPDVRP------------KEFEEFFSQWGTIIDAQLMLDKDTGQSR 129 (167)
T ss_dssp H---------------------HHHCEEEEEEEECTTCCH------------HHHHHHHHTTSCCSEEECCCSSSSSTTS
T ss_pred h---------------------ccCCCeEEECCCCCCCCH------------HHHHHHHHhCccEEEEEEEEcCCCCccc
Confidence 1 124678999999654332 689999999999999999987 468889
Q ss_pred eeEEEEeCCHHHHHHHHHHhCCCccCCCceEEEEec
Q 002280 709 TIQACEGNENTASAGVGQNLTNDETNEKGERLEEVT 744 (943)
Q Consensus 709 G~~FVeF~~~e~A~~Ai~~LnGr~~~~k~~~v~~~~ 744 (943)
|||||+|.+.++|.+|++ |+|..|+++.+.|..+.
T Consensus 130 g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 130 GFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp EEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred eEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 999999999999999998 99999999999997754
No 32
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.87 E-value=2.3e-21 Score=210.53 Aligned_cols=176 Identities=15% Similarity=0.223 Sum_probs=137.6
Q ss_pred EEEEEecCCCCCCHHHHH----HHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcc
Q 002280 551 VAIFIGGISRTLSSKMVM----EIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAV 626 (943)
Q Consensus 551 ~~LfV~NLp~~~teedL~----e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~ 626 (943)
.+|||+|||..+++++|+ ++|+.||.|..|.|.+ ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.
T Consensus 10 ~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 88 (282)
T 3pgw_A 10 HTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR-SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAK 88 (282)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC-CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEEec
Confidence 399999999999999966 9999999999999876 56689999999999999999999999999999999999986
Q ss_pred cCCCcCCC-------------------------------------------------------------CCCCCCCC---
Q 002280 627 LDGSIMDN-------------------------------------------------------------SGNPPFHG--- 642 (943)
Q Consensus 627 ~~~~~~~~-------------------------------------------------------------~~~~~~~~--- 642 (943)
........ .+..+...
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~p~ 168 (282)
T 3pgw_A 89 TDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPPPG 168 (282)
T ss_pred cCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCCCCCC
Confidence 54320000 00000000
Q ss_pred --------------------------CCCCcCCCCCCCceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhcCCCCeEE
Q 002280 643 --------------------------IPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKS 696 (943)
Q Consensus 643 --------------------------ip~~~~~~~~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskFG~V~~ 696 (943)
++.........++++|+|.||....+ .++|+++|++||.|+.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~------------~~~l~~~F~~~G~i~~ 236 (282)
T 3pgw_A 169 MIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETN------------ELMLSMLFNQFPGFKE 236 (282)
T ss_pred CCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCC------------HHHHHHHHHhcCCeEE
Confidence 00000001234678899999965322 2689999999999999
Q ss_pred EEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCCccC-CCceEEEEe
Q 002280 697 VNVVKYGDSNISTIQACEGNENTASAGVGQNLTNDETN-EKGERLEEV 743 (943)
Q Consensus 697 V~I~r~~~g~~~G~~FVeF~~~e~A~~Ai~~LnGr~~~-~k~~~v~~~ 743 (943)
|.|+.+. +|||||+|.+.++|.+|+..|||..|. ++.+.|..+
T Consensus 237 v~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 280 (282)
T 3pgw_A 237 VRLVPGR----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFA 280 (282)
T ss_pred EEEecCC----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEe
Confidence 9999653 579999999999999999999999999 988888664
No 33
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.87 E-value=1.5e-21 Score=200.83 Aligned_cols=174 Identities=15% Similarity=0.237 Sum_probs=138.5
Q ss_pred EEEEecCCC-CCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCCC
Q 002280 552 AIFIGGISR-TLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGS 630 (943)
Q Consensus 552 ~LfV~NLp~-~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~~ 630 (943)
+|||+|||. .+++++|+++|+.||.|..|.++.+. +|||||+|.+.++|.+|+..|||..|.|+.|.|.++.+...
T Consensus 5 ~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~---~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~~ 81 (198)
T 1qm9_A 5 VLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNV 81 (198)
T ss_dssp EEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC---SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCSC
T ss_pred EEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCCc
Confidence 899999999 99999999999999999999988763 89999999999999999999999999999999999875432
Q ss_pred cCCCCC-----------CCC---CCCCCCCcCCCCCCCceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhcCCC-CeE
Q 002280 631 IMDNSG-----------NPP---FHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFG-SVK 695 (943)
Q Consensus 631 ~~~~~~-----------~~~---~~~ip~~~~~~~~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskFG-~V~ 695 (943)
...... ..+ +.............|+.+|+|.||....+ .++|+++|++|| .|.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~------------~~~l~~~f~~~G~~v~ 149 (198)
T 1qm9_A 82 QLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVS------------EEDLKVLFSSNGGVVK 149 (198)
T ss_dssp CCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCC------------HHHHHHHHHHTTSCCC
T ss_pred CCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCC------------HHHHHHHHHHcCCCce
Confidence 111100 000 00000000111235789999999965333 268999999999 999
Q ss_pred EEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCCccC-CCceEEEEec
Q 002280 696 SVNVVKYGDSNISTIQACEGNENTASAGVGQNLTNDETN-EKGERLEEVT 744 (943)
Q Consensus 696 ~V~I~r~~~g~~~G~~FVeF~~~e~A~~Ai~~LnGr~~~-~k~~~v~~~~ 744 (943)
.|.|..+. +|+|||+|.+.++|.+|+..|||..|+ ++.+.|..+.
T Consensus 150 ~v~i~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 195 (198)
T 1qm9_A 150 GFKFFQKD----RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 195 (198)
T ss_dssp EEEESSTT----SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEEC
T ss_pred EEEEEeCC----CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeec
Confidence 99996643 679999999999999999999999999 9999887753
No 34
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.87 E-value=3.4e-21 Score=203.66 Aligned_cols=174 Identities=14% Similarity=0.224 Sum_probs=138.3
Q ss_pred EEEEecCCC-CCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCCC
Q 002280 552 AIFIGGISR-TLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGS 630 (943)
Q Consensus 552 ~LfV~NLp~-~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~~ 630 (943)
+|||+|||. .+++++|+++|+.||.|..|.|+.+. +|||||+|.+.++|.+|+..|||..|.|+.|.|.++.+...
T Consensus 36 ~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~---~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 112 (229)
T 2adc_A 36 VLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK---KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNV 112 (229)
T ss_dssp EEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT---SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCCCC
T ss_pred EEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC---CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCccc
Confidence 999999999 99999999999999999999998873 89999999999999999999999999999999998875432
Q ss_pred cCCCCCC-----------CC---CCCCCCCcCCCCCCCceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhcCCC-CeE
Q 002280 631 IMDNSGN-----------PP---FHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFG-SVK 695 (943)
Q Consensus 631 ~~~~~~~-----------~~---~~~ip~~~~~~~~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskFG-~V~ 695 (943)
....... .+ +.............|+.+|+|.||....+ .++|+++|++|| .|.
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t------------~~~l~~~f~~~G~~i~ 180 (229)
T 2adc_A 113 QLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVS------------EEDLKVLFSSNGGVVK 180 (229)
T ss_dssp CCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCC------------HHHHHHHHHTTSCCEE
T ss_pred cCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCC------------HHHHHHHHHHcCCCee
Confidence 1111000 00 00000000111235689999999965333 268999999999 999
Q ss_pred EEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCCccC-CCceEEEEec
Q 002280 696 SVNVVKYGDSNISTIQACEGNENTASAGVGQNLTNDETN-EKGERLEEVT 744 (943)
Q Consensus 696 ~V~I~r~~~g~~~G~~FVeF~~~e~A~~Ai~~LnGr~~~-~k~~~v~~~~ 744 (943)
.|.|... .+|||||+|.+.++|.+|+..|||..|+ ++.+.|..+.
T Consensus 181 ~v~i~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~ 226 (229)
T 2adc_A 181 GFKFFQK----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 226 (229)
T ss_dssp EEEECSS----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECS
T ss_pred EEEEEEC----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEec
Confidence 9999653 2679999999999999999999999999 9999887753
No 35
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.85 E-value=9.7e-22 Score=197.78 Aligned_cols=159 Identities=14% Similarity=0.102 Sum_probs=132.4
Q ss_pred eEEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEE-ecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccC
Q 002280 550 EVAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFE-VNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLD 628 (943)
Q Consensus 550 ~~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~-~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~ 628 (943)
..+|||+|||..+++++|+++|+.||.+..+.+. ..++.++|||||+|.+.++|.+|+ .|||..|.|+.|.|.++.+.
T Consensus 13 ~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~~~~~ 91 (175)
T 1fje_B 13 PFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKPKGR 91 (175)
T ss_dssp SEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEECCCCS
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEecCCCc
Confidence 3499999999999999999999999876652221 124568999999999999999999 59999999999999987653
Q ss_pred CCcCCCCCCCCCCCCCCCcCCCCCCCceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCcc
Q 002280 629 GSIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYGDSNIS 708 (943)
Q Consensus 629 ~~~~~~~~~~~~~~ip~~~~~~~~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskFG~V~~V~I~r~~~g~~~ 708 (943)
... ...+..+|+|.||....+. ++|+++|++||.|..| ...+..+
T Consensus 92 ~~~-------------------~~~~~~~l~v~nlp~~~t~------------~~l~~~F~~~g~v~~~----~~~~~~~ 136 (175)
T 1fje_B 92 DSK-------------------KVRAARTLLAKNLSFNITE------------DELKEVFEDALEIRLV----SQDGKSK 136 (175)
T ss_dssp SCS-------------------TTGGGGEEEEESCCSSCCH------------HHHHHHCTTCSEEEEE----CSSSSCC
T ss_pred ccc-------------------ccccCCEEEEeCCCCCCCH------------HHHHHHHHhcCeEEEe----cCCCCCc
Confidence 321 1235789999999654332 6899999999999877 5667889
Q ss_pred eeEEEEeCCHHHHHHHHHHhCCCccCCCceEEEEec
Q 002280 709 TIQACEGNENTASAGVGQNLTNDETNEKGERLEEVT 744 (943)
Q Consensus 709 G~~FVeF~~~e~A~~Ai~~LnGr~~~~k~~~v~~~~ 744 (943)
|||||+|.+.++|.+|+..|||..|+++.+.|..+.
T Consensus 137 g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~ 172 (175)
T 1fje_B 137 GIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 172 (175)
T ss_dssp SEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECS
T ss_pred eEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecC
Confidence 999999999999999999999999999998887653
No 36
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.85 E-value=5.9e-21 Score=205.87 Aligned_cols=151 Identities=15% Similarity=0.144 Sum_probs=133.4
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCCCc
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGSI 631 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~~~ 631 (943)
+|||+|||..+|+++|+++|+.||.|..|.|.+ ++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.
T Consensus 24 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~----~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~----- 94 (261)
T 3sde_A 24 RLFVGNLPTDITEEDFKRLFERYGEPSEVFINR----DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFAT----- 94 (261)
T ss_dssp EEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC-----
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC----CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecc-----
Confidence 899999999999999999999999999999865 48999999999999999999999999999999999763
Q ss_pred CCCCCCCCCCCCCCCcCCCCCCCceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCcceeE
Q 002280 632 MDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYGDSNISTIQ 711 (943)
Q Consensus 632 ~~~~~~~~~~~ip~~~~~~~~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskFG~V~~V~I~r~~~g~~~G~~ 711 (943)
+..+|+|.||....+ .++|+++|++||.|..|.|+.+..|..+|||
T Consensus 95 ----------------------~~~~l~v~nl~~~~t------------~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~a 140 (261)
T 3sde_A 95 ----------------------HGAALTVKNLSPVVS------------NELLEQAFSQFGPVEKAVVVVDDRGRATGKG 140 (261)
T ss_dssp ----------------------CSSEEEEESCCTTCC------------HHHHHHHHGGGSCEEEEEEEEETTSCEEEEE
T ss_pred ----------------------cCCcccccCCCCCCC------------HHHHHHHHHhcCCeEEEEeeeCCCCCcCcEE
Confidence 245799999965333 2689999999999999999999889999999
Q ss_pred EEEeCCHHHHHHHHHHhCC-CccC---CCceEEEEecc
Q 002280 712 ACEGNENTASAGVGQNLTN-DETN---EKGERLEEVTD 745 (943)
Q Consensus 712 FVeF~~~e~A~~Ai~~LnG-r~~~---~k~~~v~~~~~ 745 (943)
||+|.+.++|.+|+..||| ..+. ++.+.|.+...
T Consensus 141 fV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~ 178 (261)
T 3sde_A 141 FVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQ 178 (261)
T ss_dssp EEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCC
T ss_pred EEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccc
Confidence 9999999999999999955 4443 78888776543
No 37
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.71 E-value=4.3e-17 Score=162.02 Aligned_cols=123 Identities=13% Similarity=0.166 Sum_probs=100.0
Q ss_pred ecCCCeeeEEeCCHHHHHHHHH-ccCC-cccc------ccccccC----------CccceeEEEEEecCCCCCCHHHHHH
Q 002280 508 QREKGQAFVEFLTAEDASAALC-CDGC-SFSG------SILKIKR----------PKEFVEVAIFIGGISRTLSSKMVME 569 (943)
Q Consensus 508 ~~skGyAFVeF~s~edA~~Al~-LnG~-~l~G------r~LkV~r----------p~d~~~~~LfV~NLp~~~teedL~e 569 (943)
..++|||||+|.+.++|++|+. +++. .+.| ....... .......+|||+|||..+++++|++
T Consensus 10 ~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~ 89 (158)
T 2kn4_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYRTSPDTLRR 89 (158)
T ss_dssp SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTTCCHHHHHH
T ss_pred ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHH
Confidence 3579999999999999999997 6652 2222 1111110 0011123999999999999999999
Q ss_pred HHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCCC
Q 002280 570 IVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGS 630 (943)
Q Consensus 570 ~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~~ 630 (943)
+|+.||.|..|.|+.+ ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.+|.+...
T Consensus 90 ~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 90 VFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 152 (158)
T ss_dssp HHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSC
T ss_pred HHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 9999999999999887 567899999999999999999999999999999999999976543
No 38
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.66 E-value=1.9e-16 Score=147.42 Aligned_cols=90 Identities=31% Similarity=0.334 Sum_probs=83.2
Q ss_pred CCCceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhcCCCCeEEEEEecCCCC---CcceeEEEEeCCHHHHHHHHHHh
Q 002280 652 KKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYGDS---NISTIQACEGNENTASAGVGQNL 728 (943)
Q Consensus 652 ~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskFG~V~~V~I~r~~~g---~~~G~~FVeF~~~e~A~~Ai~~L 728 (943)
+.||+||+|.||++++++ .++.+|++|.+||+++|++||.|++|.|+++..+ ..+|++||+|.+.++|.+|+.+|
T Consensus 2 g~ps~vl~L~Nm~~~~~l--~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~l 79 (105)
T 3v4m_A 2 GHPTEVLCLMNMVLPEEL--LDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGL 79 (105)
T ss_dssp CSCCSEEEEESSCCGGGS--SSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCHHHc--cChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHh
Confidence 468999999999999999 5899999999999999999999999999988654 46899999999999999999999
Q ss_pred CCCccCCCceEEEEe
Q 002280 729 TNDETNEKGERLEEV 743 (943)
Q Consensus 729 nGr~~~~k~~~v~~~ 743 (943)
||+.|+++.+.+...
T Consensus 80 nG~~f~GR~i~v~~~ 94 (105)
T 3v4m_A 80 TGRKFANRVVVTKYC 94 (105)
T ss_dssp TTCEETTEECEEEEE
T ss_pred CCCEeCCCEEEEEEe
Confidence 999999999998764
No 39
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.66 E-value=1.8e-16 Score=156.49 Aligned_cols=116 Identities=16% Similarity=0.259 Sum_probs=104.0
Q ss_pred cCCCeeeEEeCCHHHHHHHHH-c-cCCccccccccccCCccc--------------------eeEEEEEecCCCCCCHHH
Q 002280 509 REKGQAFVEFLTAEDASAALC-C-DGCSFSGSILKIKRPKEF--------------------VEVAIFIGGISRTLSSKM 566 (943)
Q Consensus 509 ~skGyAFVeF~s~edA~~Al~-L-nG~~l~Gr~LkV~rp~d~--------------------~~~~LfV~NLp~~~teed 566 (943)
.-+|+++|+|.+.++|.+|+. | ||..+.| .|.+...... ...+|||+|||+.+++++
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~ 89 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKTE 89 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCHH
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHH
Confidence 458999999999999999998 8 9999999 8888754321 112999999999999999
Q ss_pred HHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccC
Q 002280 567 VMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLD 628 (943)
Q Consensus 567 L~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~ 628 (943)
|+++|++||.|..|.|+.+ ++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.+.
T Consensus 90 l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 90 LERAFGYYGPLRSVWVARN---PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp HHHHHHHHSCEEEEEECSS---SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred HHHHHHhhCCEEEEEEeeC---CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 9999999999999999876 7899999999999999999999999999999999998664
No 40
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.60 E-value=1.6e-15 Score=143.21 Aligned_cols=87 Identities=22% Similarity=0.138 Sum_probs=81.2
Q ss_pred CCceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCCc
Q 002280 653 KPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYGDSNISTIQACEGNENTASAGVGQNLTNDE 732 (943)
Q Consensus 653 ~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskFG~V~~V~I~r~~~g~~~G~~FVeF~~~e~A~~Ai~~LnGr~ 732 (943)
.||+||+|.|||+++++ .+++++.+|.+||+++|++||.|++|.|+++. .+|++||+|.+.++|.+|+..|||++
T Consensus 5 ~ps~vv~L~Nm~~~~e~--~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~---~~G~~fV~f~~~e~A~~Ai~~lnG~~ 79 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTE--EEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS---AQGNVYVKCPSIAAAIAAVNALHGRW 79 (114)
T ss_dssp CCCSEEEEESSCCTTTC--CSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC---TTCCEEEECSSHHHHHHHHHHHTTCE
T ss_pred CCCcEEEEECCCChHHc--cChhHHHHHHHHHHHHHhccCCEEEEEEecCC---CcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 57999999999999998 59999999999999999999999999998864 48999999999999999999999999
Q ss_pred cCCCceEEEEec
Q 002280 733 TNEKGERLEEVT 744 (943)
Q Consensus 733 ~~~k~~~v~~~~ 744 (943)
|+++.+.+....
T Consensus 80 f~GR~i~v~~~~ 91 (114)
T 3s6e_A 80 FAGKMITAAYVP 91 (114)
T ss_dssp ETTEECEEEEEC
T ss_pred ECCEEEEEEEEc
Confidence 999999987763
No 41
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.59 E-value=1.3e-15 Score=143.78 Aligned_cols=95 Identities=21% Similarity=0.205 Sum_probs=63.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcccccccc
Q 002280 463 MRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSILK 541 (943)
Q Consensus 463 ~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~Lk 541 (943)
..+|||+|||+.+|+++|+++|.+||.+..+. .+. ..+.++|||||+|.+.++|..||. |||..|.|++|.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~------i~~--d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~ 76 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCK------VVC--DENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVF 76 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEE------EEE--ETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEE------Eee--cCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 45899999999999999999999998533211 111 124578999999999999999998 999999999999
Q ss_pred ccCCccce------------eEEEEEecCCCCCCHH
Q 002280 542 IKRPKEFV------------EVAIFIGGISRTLSSK 565 (943)
Q Consensus 542 V~rp~d~~------------~~~LfV~NLp~~~tee 565 (943)
|.+..... ..+|||+|||+.+|++
T Consensus 77 V~~a~~~~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~ 112 (115)
T 4f25_A 77 VGRFKSRKEREAELGARAKEFTNVYIKNFGPGSTRA 112 (115)
T ss_dssp EEESSCCCC---------------------------
T ss_pred EEECCCccccccccccccCCCCceEeCCCCCCcccc
Confidence 98543211 1179999999999876
No 42
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.57 E-value=1e-14 Score=144.86 Aligned_cols=148 Identities=12% Similarity=0.063 Sum_probs=108.7
Q ss_pred EEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCCCcCCCCCCCCCCCCCCCcCCCCCCCceEE
Q 002280 579 AYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGSIMDNSGNPPFHGIPKHALPLLKKPTEVL 658 (943)
Q Consensus 579 ~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~~~~~~~~~~~~~~ip~~~~~~~~~ps~vL 658 (943)
.+.|..+...++|||||+|.+.++|.+|+..+++....+..+.+..+.......... ..........+..+|
T Consensus 2 ~~kl~ln~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~l 73 (158)
T 2kn4_A 2 QYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGS--------HHHHHHMDVEGMTSL 73 (158)
T ss_dssp EEEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCC--------CCSSCCCCCCBCCEE
T ss_pred cEEEEecCccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccc--------cccccccCCCCCCEE
Confidence 456777777789999999999999999999888754433333332211100000000 000011123457899
Q ss_pred EeccCCCcCCCCCCChHHHHHHHHHHHHHhcCCCCeEEEEEecC-CCCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCc
Q 002280 659 KLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKY-GDSNISTIQACEGNENTASAGVGQNLTNDETNEKG 737 (943)
Q Consensus 659 ~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskFG~V~~V~I~r~-~~g~~~G~~FVeF~~~e~A~~Ai~~LnGr~~~~k~ 737 (943)
+|.||....+ .++|+++|++||.|+.|.|+.+ ..|..+|||||+|.+.++|.+|+..|||..|+++.
T Consensus 74 ~v~nl~~~~~------------~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 141 (158)
T 2kn4_A 74 KVDNLTYRTS------------PDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRE 141 (158)
T ss_dssp EEESCCTTCC------------HHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSE
T ss_pred EEeCCCCCCC------------HHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 9999965333 2689999999999999999988 47889999999999999999999999999999999
Q ss_pred eEEEEeccc
Q 002280 738 ERLEEVTDH 746 (943)
Q Consensus 738 ~~v~~~~~~ 746 (943)
+.|..+...
T Consensus 142 l~v~~a~~~ 150 (158)
T 2kn4_A 142 LRVQMARYG 150 (158)
T ss_dssp EEEEEECCS
T ss_pred EEEEECCCC
Confidence 999887654
No 43
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.57 E-value=4.7e-15 Score=139.91 Aligned_cols=78 Identities=18% Similarity=0.351 Sum_probs=74.3
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDG 629 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~ 629 (943)
+|||+|||+.+++++|+++|++||.|..|+|+.+.+.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.+..
T Consensus 7 ~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~ 84 (115)
T 4f25_A 7 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 84 (115)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCC
T ss_pred EEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCcc
Confidence 899999999999999999999999999999999987789999999999999999999999999999999999986643
No 44
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.57 E-value=6e-15 Score=135.62 Aligned_cols=78 Identities=15% Similarity=0.313 Sum_probs=73.2
Q ss_pred eEEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEccc
Q 002280 550 EVAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 627 (943)
Q Consensus 550 ~~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~ 627 (943)
..+|||+|||..+|+++|+++|++||.|..|.|+++ ++.++|||||+|.+.++|.+|+..|||..|.|++|.|.+|.|
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 348999999999999999999999999999999987 456789999999999999999999999999999999999976
No 45
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.51 E-value=1.6e-14 Score=137.15 Aligned_cols=84 Identities=19% Similarity=0.256 Sum_probs=74.8
Q ss_pred CCceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhcCCCCeEEEEEecCCC-----CCcceeEEEEeCCHHHHHHHHHH
Q 002280 653 KPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYGD-----SNISTIQACEGNENTASAGVGQN 727 (943)
Q Consensus 653 ~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskFG~V~~V~I~r~~~-----g~~~G~~FVeF~~~e~A~~Ai~~ 727 (943)
.|++||+|.||+++++|. .+|.+||+++|++||.|++|.|+++.. +..+|++||+|.+.++|.+|+.+
T Consensus 18 ~ps~vl~L~Nm~~~~el~-------ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~ 90 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDID-------DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQA 90 (118)
T ss_dssp HSCCEEEEESCSCGGGCC-------TTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHH-------HHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHH
Confidence 489999999999998872 246789999999999999999998743 45679999999999999999999
Q ss_pred hCCCccCCCceEEEEe
Q 002280 728 LTNDETNEKGERLEEV 743 (943)
Q Consensus 728 LnGr~~~~k~~~v~~~ 743 (943)
|||++|+++.+.+...
T Consensus 91 LnGr~f~GR~i~v~~~ 106 (118)
T 3ue2_A 91 LNGRWFAGRKVVAEVY 106 (118)
T ss_dssp HTTCEETTEECEEEEE
T ss_pred HCCCEECCcEEEEEEc
Confidence 9999999999998765
No 46
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.51 E-value=3.3e-14 Score=132.29 Aligned_cols=85 Identities=15% Similarity=0.168 Sum_probs=74.7
Q ss_pred CCCceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhcCCCCeEEEEEecCC--CCCcceeEEEEeCCHHHHHHHHHHhC
Q 002280 652 KKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYG--DSNISTIQACEGNENTASAGVGQNLT 729 (943)
Q Consensus 652 ~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskFG~V~~V~I~r~~--~g~~~G~~FVeF~~~e~A~~Ai~~Ln 729 (943)
..|++||+|.||++++++. .++.+||+++|++||.|++|.|+++. .+..+|||||+|.+.++|.+|+.+||
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~-------dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~ln 77 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVD-------EDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLN 77 (105)
T ss_dssp GSCCSEEEEESSSCSCCC----------CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHT
T ss_pred CCCCCEEEEEcCCChHHhh-------HHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHC
Confidence 4689999999999988872 24568999999999999999999874 35789999999999999999999999
Q ss_pred CCccCCCceEEEEe
Q 002280 730 NDETNEKGERLEEV 743 (943)
Q Consensus 730 Gr~~~~k~~~v~~~ 743 (943)
|++|+++.+.+...
T Consensus 78 G~~~~Gr~i~v~~a 91 (105)
T 2pe8_A 78 GRYFGGRVVKACFY 91 (105)
T ss_dssp TCEETTEECEEEEC
T ss_pred CCEECCcEEEEEEc
Confidence 99999999988765
No 47
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.51 E-value=8.6e-14 Score=137.15 Aligned_cols=141 Identities=16% Similarity=0.059 Sum_probs=108.3
Q ss_pred EEecCCCCCCEEEEeecChhHHHHHHHHh-CCCccCCeEEEEEEcccCCCcCCCCCCCCCCCCCCCcCCCCCCCceEEEe
Q 002280 582 FEVNEDHEEPCAFIEYVDQLVTPKAIAGL-NGLKVGGQVLTAVQAVLDGSIMDNSGNPPFHGIPKHALPLLKKPTEVLKL 660 (943)
Q Consensus 582 l~~d~~~skG~aFVeF~~~e~A~kAl~~L-nG~~~~gr~L~V~~A~~~~~~~~~~~~~~~~~ip~~~~~~~~~ps~vL~L 660 (943)
|..+...-+|+++|+|.+.+.|.+|+..| ||..+.| .|.+.++............ ...........+.+.|+|
T Consensus 5 l~l~g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~V 78 (150)
T 2i2y_A 5 LILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHH-----HHHHMHRDSCPLDCKVYV 78 (150)
T ss_dssp EEECCSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSS-----CCCCSCSSSSTTSCEEEE
T ss_pred eeeccccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcccccccccc-----ccccccccCCCCCCEEEE
Confidence 33444456899999999999999999999 9999999 9999876542211100000 000011122456789999
Q ss_pred ccCCCcCCCCCCChHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCceEE
Q 002280 661 KNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYGDSNISTIQACEGNENTASAGVGQNLTNDETNEKGERL 740 (943)
Q Consensus 661 ~Nlv~~~~l~~i~~~~~~ei~eDlre~fskFG~V~~V~I~r~~~g~~~G~~FVeF~~~e~A~~Ai~~LnGr~~~~k~~~v 740 (943)
.||....+. ++|+++|++||.|..|.|+++ .+|||||+|.+.++|..|+..|||..|+++.+.|
T Consensus 79 ~nl~~~~t~------------~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 142 (150)
T 2i2y_A 79 GNLGNNGNK------------TELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRV 142 (150)
T ss_dssp ESCCSCCSC------------HHHHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEE
T ss_pred eCCCCCCCH------------HHHHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 999654443 689999999999999999986 5789999999999999999999999999999999
Q ss_pred EEec
Q 002280 741 EEVT 744 (943)
Q Consensus 741 ~~~~ 744 (943)
..+.
T Consensus 143 ~~a~ 146 (150)
T 2i2y_A 143 ELSN 146 (150)
T ss_dssp EECC
T ss_pred EEcC
Confidence 7764
No 48
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.51 E-value=1.4e-14 Score=140.82 Aligned_cols=119 Identities=12% Similarity=0.145 Sum_probs=77.4
Q ss_pred CeeeEEeCCHHHHHHHHH-ccCCcccccc-ccccCCc--cceeEEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--
Q 002280 512 GQAFVEFLTAEDASAALC-CDGCSFSGSI-LKIKRPK--EFVEVAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN-- 585 (943)
Q Consensus 512 GyAFVeF~s~edA~~Al~-LnG~~l~Gr~-LkV~rp~--d~~~~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d-- 585 (943)
-|+|++|.+...+..||+ ++|-...|+. +...+|. .....+|||+|||..+++++|+++|++||.|..|.|+.+
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~ 84 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRGSMSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRY 84 (135)
T ss_dssp ------------------------------CCSCCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSS
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCCCCCcCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC
Confidence 468999999999999999 8886555543 3333322 222349999999999999999999999999999999877
Q ss_pred CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCCC
Q 002280 586 EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGS 630 (943)
Q Consensus 586 ~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~~ 630 (943)
++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.+...
T Consensus 85 ~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~ 129 (135)
T 2lea_A 85 TKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 129 (135)
T ss_dssp SSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCC
T ss_pred CCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 456799999999999999999999999999999999999876443
No 49
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.49 E-value=2e-14 Score=166.08 Aligned_cols=79 Identities=18% Similarity=0.259 Sum_probs=73.9
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDG 629 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~ 629 (943)
+|||+|||+.+|+++|.++|++||.|..|.|+.+ ++.++|||||+|.+.++|.+||..|||..|.|+.|.|.+|.+..
T Consensus 104 ~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~~~ 183 (437)
T 3pgw_S 104 TLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRT 183 (437)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCCCC
Confidence 9999999999999999999999999999999887 46679999999999999999999999999999999999997644
Q ss_pred C
Q 002280 630 S 630 (943)
Q Consensus 630 ~ 630 (943)
.
T Consensus 184 ~ 184 (437)
T 3pgw_S 184 V 184 (437)
T ss_pred C
Confidence 3
No 50
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=2.5e-13 Score=124.93 Aligned_cols=80 Identities=21% Similarity=0.480 Sum_probs=75.3
Q ss_pred EEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCCC
Q 002280 551 VAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGS 630 (943)
Q Consensus 551 ~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~~ 630 (943)
.+|||+|||..+++++|+++|++||.|..|.|+.+...++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.+...
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 95 (103)
T 2cqi_A 16 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSS 95 (103)
T ss_dssp CEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCTTC
T ss_pred CEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCCCcc
Confidence 39999999999999999999999999999999998777899999999999999999999999999999999999977543
No 51
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.46 E-value=1e-13 Score=123.19 Aligned_cols=84 Identities=36% Similarity=0.671 Sum_probs=73.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHHccCCccccccc
Q 002280 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSIL 540 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~LnG~~l~Gr~L 540 (943)
++.++|||+|||+.+|+++|+++|++||.+.|+...+. ..|.++.+..++|||||+|.+.++|..|+.|||..|.|+.|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~-~~v~~~~~~~~kg~afV~f~~~~~a~~A~~l~g~~~~g~~l 82 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPG-NPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQGQSL 82 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSS-CSEEEEEECSSSSEEEEEESSHHHHHHHGGGTTCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCC-CcceEEEecCCCcEEEEEcCCHHHHHHHHhcCCCEECCeEE
Confidence 45789999999999999999999999965555433332 36788888889999999999999999999999999999999
Q ss_pred cccCC
Q 002280 541 KIKRP 545 (943)
Q Consensus 541 kV~rp 545 (943)
+|.+|
T Consensus 83 ~V~rp 87 (87)
T 2hzc_A 83 KIRRP 87 (87)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 99876
No 52
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.46 E-value=4.5e-14 Score=127.66 Aligned_cols=78 Identities=10% Similarity=0.148 Sum_probs=71.1
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcC-CeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHh-CCCccCCeEEEEEEccc
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFG-PLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGL-NGLKVGGQVLTAVQAVL 627 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG-~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~L-nG~~~~gr~L~V~~A~~ 627 (943)
+|||+|||..+|+++|+++|++|| .|..|+|+++ ++.++|||||+|.+.++|.+|+..| ++..|.|++|.|.+|.|
T Consensus 3 ~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~~ 82 (91)
T 2lxi_A 3 IVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDP 82 (91)
T ss_dssp EEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCCS
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcCC
Confidence 799999999999999999999999 8999999887 4678999999999999999999987 46789999999999876
Q ss_pred CC
Q 002280 628 DG 629 (943)
Q Consensus 628 ~~ 629 (943)
..
T Consensus 83 ~~ 84 (91)
T 2lxi_A 83 KP 84 (91)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 53
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.46 E-value=7.1e-14 Score=131.31 Aligned_cols=100 Identities=15% Similarity=0.176 Sum_probs=83.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeee---eecCCCeeeEEeCCHHHHHHHHH-ccCCccc
Q 002280 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCV---IQREKGQAFVEFLTAEDASAALC-CDGCSFS 536 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~---~~~skGyAFVeF~s~edA~~Al~-LnG~~l~ 536 (943)
...++|||+|||+.+|+++|+++|..||.+ ..+. .+.++|||||+|.+.++|..|+. |||..|.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v------------~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~ 73 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPI------------RQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVS 73 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCE------------EEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCe------------EEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 456899999999999999999999999843 3332 25678999999999999999999 9999999
Q ss_pred cccccccCCccceeEEEEEecCCCCCCHHHHHHHHhhcCC
Q 002280 537 GSILKIKRPKEFVEVAIFIGGISRTLSSKMVMEIVCAFGP 576 (943)
Q Consensus 537 Gr~LkV~rp~d~~~~~LfV~NLp~~~teedL~e~Fs~fG~ 576 (943)
|+.|.|........ ..+++...++++|.++|++||.
T Consensus 74 g~~l~v~~a~~~~~----~~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 74 NRYLVVLYYNANRA----FQKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp SCBCEEEECCHHHH----TTTSCHHHHHHHHHHHHHHHCC
T ss_pred CeEEEEEEecCChh----hhhhhHhHhHHHHHHHHHHhCC
Confidence 99999986553211 1577788889999999999984
No 54
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.45 E-value=1.7e-13 Score=128.38 Aligned_cols=77 Identities=8% Similarity=0.166 Sum_probs=72.5
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecC--CCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLD 628 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~--~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~ 628 (943)
+|||+|||+.+++++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|.+|+..|||..|.|+.|.|.+|...
T Consensus 8 ~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~~ 86 (110)
T 3s8s_A 8 EVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIKG 86 (110)
T ss_dssp EEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSTT
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 89999999999999999999999999999999884 567999999999999999999999999999999999988543
No 55
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.45 E-value=2.4e-13 Score=119.71 Aligned_cols=77 Identities=14% Similarity=0.241 Sum_probs=72.2
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLD 628 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~ 628 (943)
+|||+|||..+++++|+++|++||.|..+.++.+ ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.+|.+.
T Consensus 3 ~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 3 NLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 7999999999999999999999999999999887 4556899999999999999999999999999999999998664
No 56
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=4.2e-13 Score=123.45 Aligned_cols=80 Identities=15% Similarity=0.213 Sum_probs=75.3
Q ss_pred EEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCCC
Q 002280 551 VAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGS 630 (943)
Q Consensus 551 ~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~~ 630 (943)
.+|||+|||..+++++|+++|++||.|..|.|+.+.+.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.+...
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 95 (103)
T 2cq3_A 16 KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVM 95 (103)
T ss_dssp CEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcccCCC
Confidence 39999999999999999999999999999999998777899999999999999999999999999999999999977544
No 57
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.44 E-value=1e-13 Score=126.56 Aligned_cols=78 Identities=13% Similarity=0.222 Sum_probs=70.2
Q ss_pred eEEEEEecCCCCCCHHHHHHHHhhcCC--eeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCC----ccCCeEEE
Q 002280 550 EVAIFIGGISRTLSSKMVMEIVCAFGP--LKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGL----KVGGQVLT 621 (943)
Q Consensus 550 ~~~LfV~NLp~~~teedL~e~Fs~fG~--I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~----~~~gr~L~ 621 (943)
..+|||+|||+.+|+++|+++|++||. +..|+|++| ++.++|||||+|.+.++|.+|+..|||. .|.|++|.
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~ 88 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIG 88 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEE
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEE
Confidence 349999999999999999999999995 568888887 4678999999999999999999999997 48999999
Q ss_pred EEEccc
Q 002280 622 AVQAVL 627 (943)
Q Consensus 622 V~~A~~ 627 (943)
|.+|..
T Consensus 89 V~~Aks 94 (95)
T 2lkz_A 89 VDFAKS 94 (95)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 999853
No 58
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.44 E-value=3e-13 Score=120.15 Aligned_cols=76 Identities=16% Similarity=0.365 Sum_probs=71.4
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEccc
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 627 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~ 627 (943)
+|||+|||..+++++|+++|++||.|..|.++.+ ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.+|.+
T Consensus 8 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 85 (87)
T 3bs9_A 8 HVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 85 (87)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC-
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecCC
Confidence 8999999999999999999999999999999887 456789999999999999999999999999999999999865
No 59
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.43 E-value=7.3e-14 Score=125.62 Aligned_cols=78 Identities=17% Similarity=0.183 Sum_probs=68.8
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcC--CeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEccc
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFG--PLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 627 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG--~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~ 627 (943)
+|||+|||..+++++|+++|++|| .|..+.|+.+ ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.+
T Consensus 3 ~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~ 82 (90)
T 3p5t_L 3 ALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNK 82 (90)
T ss_dssp -CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC--
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCC
Confidence 689999999999999999999999 9999999987 456799999999999999999999999999999999998866
Q ss_pred CC
Q 002280 628 DG 629 (943)
Q Consensus 628 ~~ 629 (943)
..
T Consensus 83 ~~ 84 (90)
T 3p5t_L 83 LE 84 (90)
T ss_dssp --
T ss_pred Cc
Confidence 44
No 60
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=4e-13 Score=122.34 Aligned_cols=78 Identities=18% Similarity=0.205 Sum_probs=73.0
Q ss_pred EEEEEecCCCCCCHHHHH----HHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcc
Q 002280 551 VAIFIGGISRTLSSKMVM----EIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAV 626 (943)
Q Consensus 551 ~~LfV~NLp~~~teedL~----e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~ 626 (943)
.+|||+|||..+++++|+ ++|++||.|..|.|+.+... +|||||+|.+.++|.+|+..|||..|.|+.|.|.+|.
T Consensus 10 ~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~-rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~ 88 (96)
T 2dgx_A 10 ADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY-QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLAT 88 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST-TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC-CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 389999999999999999 99999999999999988666 9999999999999999999999999999999999986
Q ss_pred cCC
Q 002280 627 LDG 629 (943)
Q Consensus 627 ~~~ 629 (943)
+..
T Consensus 89 ~~~ 91 (96)
T 2dgx_A 89 GAS 91 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 643
No 61
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.43 E-value=8.3e-14 Score=128.01 Aligned_cols=78 Identities=21% Similarity=0.270 Sum_probs=66.5
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccccccc
Q 002280 462 PMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSIL 540 (943)
Q Consensus 462 ~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~L 540 (943)
+..+|||+|||+.+|+++|+++|++||.+..+ ..+.+..++.++|||||+|.+.++|.+|+. |||..|.|++|
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v------~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l 91 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESA------KLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTI 91 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEE------EEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEe------EeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 45689999999999999999999999864332 133445568899999999999999999998 99999999999
Q ss_pred cccCC
Q 002280 541 KIKRP 545 (943)
Q Consensus 541 kV~rp 545 (943)
+|.++
T Consensus 92 ~V~~A 96 (99)
T 4fxv_A 92 KVSYA 96 (99)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 99754
No 62
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.43 E-value=6.3e-13 Score=121.27 Aligned_cols=80 Identities=21% Similarity=0.407 Sum_probs=74.3
Q ss_pred EEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccC
Q 002280 551 VAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLD 628 (943)
Q Consensus 551 ~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~ 628 (943)
.+|||+|||..+++++|+++|++||.|..|.|+.+ ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.+.
T Consensus 9 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 88 (99)
T 1whw_A 9 GRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIK 88 (99)
T ss_dssp EEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 48999999999999999999999999999999887 4567899999999999999999999999999999999999775
Q ss_pred CC
Q 002280 629 GS 630 (943)
Q Consensus 629 ~~ 630 (943)
..
T Consensus 89 ~~ 90 (99)
T 1whw_A 89 KE 90 (99)
T ss_dssp ST
T ss_pred cc
Confidence 54
No 63
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.42 E-value=8.6e-13 Score=123.86 Aligned_cols=81 Identities=15% Similarity=0.332 Sum_probs=74.9
Q ss_pred EEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccC
Q 002280 551 VAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLD 628 (943)
Q Consensus 551 ~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~ 628 (943)
.+|||+|||..+++++|+++|+.||.|..|.|+.+ ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.+.
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 95 (115)
T 2dgo_A 16 FHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 95 (115)
T ss_dssp EEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccCC
Confidence 39999999999999999999999999999999987 4566899999999999999999999999999999999999775
Q ss_pred CCc
Q 002280 629 GSI 631 (943)
Q Consensus 629 ~~~ 631 (943)
...
T Consensus 96 ~~~ 98 (115)
T 2dgo_A 96 PPA 98 (115)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 64
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.42 E-value=3.2e-13 Score=120.58 Aligned_cols=72 Identities=15% Similarity=0.254 Sum_probs=68.2
Q ss_pred EEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcc
Q 002280 551 VAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAV 626 (943)
Q Consensus 551 ~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~ 626 (943)
..|||+||++.+|+++|+++|.+||+|..+++.. ++|||||+|.+.++|.+|+..|||..+.|++|.|..|.
T Consensus 8 ~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 8 SWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 3799999999999999999999999999999865 69999999999999999999999999999999999873
No 65
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.42 E-value=3.5e-13 Score=121.20 Aligned_cols=79 Identities=15% Similarity=0.291 Sum_probs=74.4
Q ss_pred EEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCC
Q 002280 551 VAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDG 629 (943)
Q Consensus 551 ~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~ 629 (943)
.+|||+|||..+++++|+++|++||.|..|.|..+++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.+..
T Consensus 9 ~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 87 (92)
T 2dgv_A 9 CQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNAS 87 (92)
T ss_dssp CEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCCS
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCC
Confidence 3899999999999999999999999999999998877789999999999999999999999999999999999986644
No 66
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.41 E-value=5.4e-13 Score=121.21 Aligned_cols=79 Identities=19% Similarity=0.408 Sum_probs=73.5
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecC--CCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDG 629 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~--~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~ 629 (943)
+|||+|||..+++++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|.+|+..|||..|.|+.|.|.+|.+..
T Consensus 4 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 83 (96)
T 2x1f_A 4 VVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNSD 83 (96)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSS
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCCCC
Confidence 79999999999999999999999999999998873 5679999999999999999999999999999999999997654
Q ss_pred C
Q 002280 630 S 630 (943)
Q Consensus 630 ~ 630 (943)
.
T Consensus 84 ~ 84 (96)
T 2x1f_A 84 I 84 (96)
T ss_dssp G
T ss_pred C
Confidence 3
No 67
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.41 E-value=3.3e-13 Score=120.49 Aligned_cols=71 Identities=18% Similarity=0.264 Sum_probs=66.0
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcccccccc
Q 002280 463 MRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSILK 541 (943)
Q Consensus 463 ~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~Lk 541 (943)
+.-|||+||++.+||++|+++|.+|| +|.++.+..++|||||+|.+.++|..|+. |||..|.|++|+
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G------------~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~ 74 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHG------------PLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIF 74 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHS------------CEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhC------------CEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEE
Confidence 55799999999999999999999998 77888888899999999999999999999 999999999999
Q ss_pred ccCC
Q 002280 542 IKRP 545 (943)
Q Consensus 542 V~rp 545 (943)
|..+
T Consensus 75 V~~A 78 (89)
T 2wbr_A 75 AESP 78 (89)
T ss_dssp EECC
T ss_pred EEEC
Confidence 8744
No 68
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=8.3e-13 Score=119.42 Aligned_cols=79 Identities=16% Similarity=0.365 Sum_probs=73.7
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDG 629 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~ 629 (943)
+|||+|||..+++++|+++|++||.|..|.|+.+ ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.+..
T Consensus 7 ~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 86 (95)
T 2dnz_A 7 GLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERL 86 (95)
T ss_dssp EEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSCCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccccc
Confidence 8999999999999999999999999999999887 45679999999999999999999999999999999999997654
Q ss_pred C
Q 002280 630 S 630 (943)
Q Consensus 630 ~ 630 (943)
.
T Consensus 87 ~ 87 (95)
T 2dnz_A 87 D 87 (95)
T ss_dssp C
T ss_pred C
Confidence 3
No 69
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=4.4e-13 Score=123.35 Aligned_cols=80 Identities=19% Similarity=0.276 Sum_probs=74.2
Q ss_pred EEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccC
Q 002280 551 VAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLD 628 (943)
Q Consensus 551 ~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~ 628 (943)
.+|||+|||..+++++|+++|++||.|..|.|+.+ ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.+.
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 95 (103)
T 2cq0_A 16 ATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPS 95 (103)
T ss_dssp EEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECCCC
Confidence 49999999999999999999999999999999887 4567899999999999999999999999999999999999765
Q ss_pred CC
Q 002280 629 GS 630 (943)
Q Consensus 629 ~~ 630 (943)
..
T Consensus 96 ~~ 97 (103)
T 2cq0_A 96 TN 97 (103)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 70
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.41 E-value=4.2e-13 Score=134.58 Aligned_cols=115 Identities=19% Similarity=0.318 Sum_probs=74.0
Q ss_pred EEeCCHHHHHHHHH-ccCCccc--cccccccCC------------------------ccceeEEEEEecCCCCCCHHHHH
Q 002280 516 VEFLTAEDASAALC-CDGCSFS--GSILKIKRP------------------------KEFVEVAIFIGGISRTLSSKMVM 568 (943)
Q Consensus 516 VeF~s~edA~~Al~-LnG~~l~--Gr~LkV~rp------------------------~d~~~~~LfV~NLp~~~teedL~ 568 (943)
.+|.+.++|+.|+. |++.... |+.+..... ......+|||+|||..+++++|.
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 78889999999988 8875543 444433210 00111289999999999999999
Q ss_pred HHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCCC
Q 002280 569 EIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGS 630 (943)
Q Consensus 569 e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~~ 630 (943)
++|++||.|..|.|+.+ ++.++|||||+|.+.++|.+||..|||..|.|+.|.|.+|.+...
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 154 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGP 154 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC-
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence 99999999999999887 455689999999999999999999999999999999999976543
No 71
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.41 E-value=1.7e-13 Score=125.90 Aligned_cols=76 Identities=16% Similarity=0.192 Sum_probs=71.9
Q ss_pred EEEEecCCC------CCCHHHHHHHHhhcCCeeEEEEEecC--CCCCCEEEEeecChhHHHHHHHHhCCCccCC-eEEEE
Q 002280 552 AIFIGGISR------TLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGG-QVLTA 622 (943)
Q Consensus 552 ~LfV~NLp~------~~teedL~e~Fs~fG~I~~v~l~~d~--~~skG~aFVeF~~~e~A~kAl~~LnG~~~~g-r~L~V 622 (943)
+|||+|||. .+++++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|.+|+..|||..|.| +.|.|
T Consensus 8 ~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V 87 (100)
T 3ns6_A 8 YIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFL 87 (100)
T ss_dssp EEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEE
T ss_pred EEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEE
Confidence 899999999 99999999999999999999998884 5679999999999999999999999999999 99999
Q ss_pred EEccc
Q 002280 623 VQAVL 627 (943)
Q Consensus 623 ~~A~~ 627 (943)
.+|.+
T Consensus 88 ~~a~~ 92 (100)
T 3ns6_A 88 YTMKD 92 (100)
T ss_dssp EESHH
T ss_pred EECch
Confidence 99865
No 72
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.41 E-value=4.5e-13 Score=123.27 Aligned_cols=80 Identities=14% Similarity=0.262 Sum_probs=74.9
Q ss_pred EEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCCC
Q 002280 551 VAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGS 630 (943)
Q Consensus 551 ~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~~ 630 (943)
.+|||+|||..+++++|+++|++||.|..|.|+.+++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.+...
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 95 (103)
T 2d9p_A 16 VNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 95 (103)
T ss_dssp CCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSSCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeccccc
Confidence 39999999999999999999999999999999988667799999999999999999999999999999999999976544
No 73
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.41 E-value=4.8e-13 Score=118.35 Aligned_cols=74 Identities=18% Similarity=0.382 Sum_probs=69.9
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEc
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQA 625 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A 625 (943)
+|||+|||..+++++|+++|++||.|..|.|+.+ ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.+|
T Consensus 9 ~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 9 VLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp EEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred EEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 8999999999999999999999999999999887 3456999999999999999999999999999999999986
No 74
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=5.5e-13 Score=120.87 Aligned_cols=79 Identities=23% Similarity=0.370 Sum_probs=73.5
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEE-EEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAY-HFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLD 628 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v-~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~ 628 (943)
+|||+|||..+++++|+++|++||.|..+ .|+.+ ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.+|.+.
T Consensus 7 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 86 (96)
T 1x5t_A 7 GIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKK 86 (96)
T ss_dssp EEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEeccc
Confidence 89999999999999999999999999999 98886 4567999999999999999999999999999999999999765
Q ss_pred CC
Q 002280 629 GS 630 (943)
Q Consensus 629 ~~ 630 (943)
..
T Consensus 87 ~~ 88 (96)
T 1x5t_A 87 DS 88 (96)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 75
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.40 E-value=5.6e-13 Score=118.59 Aligned_cols=77 Identities=25% Similarity=0.483 Sum_probs=71.8
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCC--C-CCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNED--H-EEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLD 628 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~--~-skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~ 628 (943)
+|||+|||..+++++|+++|++||.|..+.|+.+.. . ++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.+.
T Consensus 6 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 85 (88)
T 4a8x_A 6 KVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAP 85 (88)
T ss_dssp EEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECCCC
Confidence 899999999999999999999999999999988753 2 7899999999999999999999999999999999998664
No 76
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.40 E-value=5.9e-13 Score=121.80 Aligned_cols=79 Identities=18% Similarity=0.353 Sum_probs=73.4
Q ss_pred EEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecC-CCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCC
Q 002280 551 VAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE-DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDG 629 (943)
Q Consensus 551 ~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~-~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~ 629 (943)
.+|||+|||..+++++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.+..
T Consensus 18 ~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 97 (100)
T 2do4_A 18 HKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNSGP 97 (100)
T ss_dssp SCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCCCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCC
Confidence 389999999999999999999999999999998874 5568999999999999999999999999999999999987644
No 77
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=5.1e-13 Score=124.71 Aligned_cols=77 Identities=16% Similarity=0.249 Sum_probs=73.6
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLD 628 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~ 628 (943)
+|||+|||..+++++|+++|++||.|..|.|+.+.+.++|||||+|.+.++|.+|+..|||..|.|+.|.|.+|.+.
T Consensus 31 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 107 (109)
T 2err_A 31 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATAR 107 (109)
T ss_dssp EEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred EEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 99999999999999999999999999999999887778999999999999999999999999999999999998653
No 78
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=7.6e-13 Score=121.41 Aligned_cols=79 Identities=16% Similarity=0.322 Sum_probs=73.7
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDG 629 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~ 629 (943)
+|||+|||..+++++|+++|++||.|..|.|+.+ ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.+..
T Consensus 14 ~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 93 (102)
T 1x5s_A 14 KLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSS 93 (102)
T ss_dssp EEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEECCC
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 9999999999999999999999999999999887 45679999999999999999999999999999999999997754
Q ss_pred C
Q 002280 630 S 630 (943)
Q Consensus 630 ~ 630 (943)
.
T Consensus 94 ~ 94 (102)
T 1x5s_A 94 D 94 (102)
T ss_dssp C
T ss_pred C
Confidence 3
No 79
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=6e-13 Score=122.99 Aligned_cols=79 Identities=19% Similarity=0.386 Sum_probs=73.3
Q ss_pred EEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecC--CCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccC
Q 002280 551 VAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLD 628 (943)
Q Consensus 551 ~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~--~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~ 628 (943)
.+|||+|||..+++++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|.+|+..|||..|.|+.|.|.+|.+.
T Consensus 24 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 103 (106)
T 1p27_B 24 WILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVR 103 (106)
T ss_dssp EEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESEES
T ss_pred CEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeecCC
Confidence 389999999999999999999999999999998874 556899999999999999999999999999999999998764
Q ss_pred C
Q 002280 629 G 629 (943)
Q Consensus 629 ~ 629 (943)
.
T Consensus 104 ~ 104 (106)
T 1p27_B 104 G 104 (106)
T ss_dssp S
T ss_pred C
Confidence 3
No 80
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=6e-13 Score=122.11 Aligned_cols=79 Identities=16% Similarity=0.317 Sum_probs=73.6
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDG 629 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~ 629 (943)
+|||+|||..+++++|+++|++||.|..|.|+.+ ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.+..
T Consensus 14 ~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 93 (102)
T 2cqb_A 14 VLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPMR 93 (102)
T ss_dssp CEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred EEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCCCCC
Confidence 8999999999999999999999999999999877 45679999999999999999999999999999999999997754
Q ss_pred C
Q 002280 630 S 630 (943)
Q Consensus 630 ~ 630 (943)
.
T Consensus 94 ~ 94 (102)
T 2cqb_A 94 I 94 (102)
T ss_dssp C
T ss_pred C
Confidence 4
No 81
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.40 E-value=5.6e-13 Score=121.37 Aligned_cols=79 Identities=18% Similarity=0.291 Sum_probs=72.8
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCC-----CCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcc
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNED-----HEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAV 626 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~-----~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~ 626 (943)
+|||+|||..+++++|+++|++||.|..|.|+.+.. .++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.
T Consensus 7 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 86 (98)
T 2cpf_A 7 GLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISE 86 (98)
T ss_dssp CEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECSS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcc
Confidence 899999999999999999999999999999987643 568999999999999999999999999999999999987
Q ss_pred cCCC
Q 002280 627 LDGS 630 (943)
Q Consensus 627 ~~~~ 630 (943)
+...
T Consensus 87 ~~~~ 90 (98)
T 2cpf_A 87 RATK 90 (98)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 6543
No 82
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=6.2e-13 Score=122.34 Aligned_cols=80 Identities=14% Similarity=0.228 Sum_probs=73.8
Q ss_pred EEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecC--CCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccC
Q 002280 551 VAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLD 628 (943)
Q Consensus 551 ~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~--~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~ 628 (943)
.+|||+|||..+++++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|.+|+..|||..|.|+.|.|.+|.+.
T Consensus 14 ~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 93 (103)
T 2dnm_A 14 ITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARYG 93 (103)
T ss_dssp CEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECSSC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECCcC
Confidence 399999999999999999999999999999998873 567899999999999999999999999999999999999764
Q ss_pred CC
Q 002280 629 GS 630 (943)
Q Consensus 629 ~~ 630 (943)
..
T Consensus 94 ~~ 95 (103)
T 2dnm_A 94 RR 95 (103)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 83
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.40 E-value=7.4e-13 Score=122.44 Aligned_cols=80 Identities=18% Similarity=0.279 Sum_probs=74.4
Q ss_pred EEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec---CCCCCCEEEEeecChhHHHHHHHHh-CCCccCCeEEEEEEcc
Q 002280 551 VAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN---EDHEEPCAFIEYVDQLVTPKAIAGL-NGLKVGGQVLTAVQAV 626 (943)
Q Consensus 551 ~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d---~~~skG~aFVeF~~~e~A~kAl~~L-nG~~~~gr~L~V~~A~ 626 (943)
.+|||+|||..+++++|+++|++||.|..|.|+.+ ++.++|||||+|.+.++|.+|+..| ||..|.|+.|.|.+|.
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~ 95 (107)
T 2cph_A 16 SKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWAD 95 (107)
T ss_dssp CCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECC
T ss_pred CEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCC
Confidence 39999999999999999999999999999999887 5677999999999999999999999 9999999999999997
Q ss_pred cCCC
Q 002280 627 LDGS 630 (943)
Q Consensus 627 ~~~~ 630 (943)
+...
T Consensus 96 ~~~~ 99 (107)
T 2cph_A 96 SEVT 99 (107)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7543
No 84
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=9.3e-13 Score=120.24 Aligned_cols=79 Identities=19% Similarity=0.287 Sum_probs=73.1
Q ss_pred EEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccC
Q 002280 551 VAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLD 628 (943)
Q Consensus 551 ~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~ 628 (943)
.+|||+|||..+++++|+++|++||.|..|.|+.+ ++.++|||||+|.+.++|.+|+. |||..|.|+.|.|.++.+.
T Consensus 11 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a~~~ 89 (99)
T 2dgs_A 11 NKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEPR 89 (99)
T ss_dssp CEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEECCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEECCCC
Confidence 39999999999999999999999999999999887 45679999999999999999998 9999999999999999765
Q ss_pred CC
Q 002280 629 GS 630 (943)
Q Consensus 629 ~~ 630 (943)
..
T Consensus 90 ~~ 91 (99)
T 2dgs_A 90 DS 91 (99)
T ss_dssp CC
T ss_pred cc
Confidence 44
No 85
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.40 E-value=9.9e-13 Score=117.33 Aligned_cols=76 Identities=13% Similarity=0.295 Sum_probs=71.4
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLD 628 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~ 628 (943)
+|||+|||..+++++|+++|++||.|..+.++.+ ++.++|||||+|.+.++|.+|+ .|||..|.|+.|.|.++.+.
T Consensus 8 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~~ 85 (89)
T 3ucg_A 8 SIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRTN 85 (89)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTTT
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccCC
Confidence 8999999999999999999999999999999987 4567999999999999999999 99999999999999988653
No 86
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=7.6e-13 Score=122.05 Aligned_cols=79 Identities=18% Similarity=0.386 Sum_probs=74.0
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDG 629 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~ 629 (943)
+|||+|||..+++++|+++|++||.|..|.|+.+ ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.+|.+..
T Consensus 17 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 96 (105)
T 1x5u_A 17 TVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAHN 96 (105)
T ss_dssp EEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTTTS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCC
Confidence 9999999999999999999999999999999887 45679999999999999999999999999999999999997755
Q ss_pred C
Q 002280 630 S 630 (943)
Q Consensus 630 ~ 630 (943)
.
T Consensus 97 ~ 97 (105)
T 1x5u_A 97 K 97 (105)
T ss_dssp C
T ss_pred c
Confidence 4
No 87
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.40 E-value=1.1e-12 Score=124.02 Aligned_cols=80 Identities=23% Similarity=0.371 Sum_probs=74.4
Q ss_pred EEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec-CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCC
Q 002280 551 VAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN-EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDG 629 (943)
Q Consensus 551 ~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d-~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~ 629 (943)
.+|||+|||..+++++|+++|++||.|..|.|+.+ ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.+|.+..
T Consensus 8 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 87 (116)
T 2fy1_A 8 GKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKPS 87 (116)
T ss_dssp CEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCCSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCC
Confidence 38999999999999999999999999999999887 46678999999999999999999999999999999999997655
Q ss_pred C
Q 002280 630 S 630 (943)
Q Consensus 630 ~ 630 (943)
.
T Consensus 88 ~ 88 (116)
T 2fy1_A 88 F 88 (116)
T ss_dssp C
T ss_pred C
Confidence 4
No 88
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.39 E-value=8.5e-13 Score=121.74 Aligned_cols=80 Identities=20% Similarity=0.334 Sum_probs=73.5
Q ss_pred EEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec-CCCCCCEEEEeecChhHHHHHHHHhCCCccCC---eEEEEEEcc
Q 002280 551 VAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN-EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGG---QVLTAVQAV 626 (943)
Q Consensus 551 ~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d-~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~g---r~L~V~~A~ 626 (943)
.+|||+|||..+++++|+++|++||.|..|.|+.+ ++.++|||||+|.+.++|.+|+..|||..|.| +.|.|.+|.
T Consensus 16 ~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~ 95 (105)
T 2dnh_A 16 RKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFAD 95 (105)
T ss_dssp CEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEECc
Confidence 39999999999999999999999999999999887 45568999999999999999999999999988 999999997
Q ss_pred cCCC
Q 002280 627 LDGS 630 (943)
Q Consensus 627 ~~~~ 630 (943)
+...
T Consensus 96 ~~~~ 99 (105)
T 2dnh_A 96 TDKE 99 (105)
T ss_dssp SSCC
T ss_pred cCcc
Confidence 6544
No 89
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.39 E-value=6.1e-13 Score=123.43 Aligned_cols=88 Identities=20% Similarity=0.256 Sum_probs=73.3
Q ss_pred ceEEEeccCC-CcCCCCC--------CCh----HHHHHHHHHHHHHh-cCCCCeEEEEEecCCCCCcceeEEEEeCCHHH
Q 002280 655 TEVLKLKNVF-NPEGFSS--------LSE----LEVEEVLEDVRLEC-ARFGSVKSVNVVKYGDSNISTIQACEGNENTA 720 (943)
Q Consensus 655 s~vL~L~Nlv-~~~~l~~--------i~~----~~~~ei~eDlre~f-skFG~V~~V~I~r~~~g~~~G~~FVeF~~~e~ 720 (943)
++||+|.||+ +|..... +++ +.|.++.+||+++| ++||.|++|.|+++..+..+|||||+|.+.++
T Consensus 1 s~~~~l~nm~~~p~~~~~~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~ 80 (104)
T 1jmt_A 1 SQTIALLNIYRNPQNSSQSADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREED 80 (104)
T ss_dssp CCEEEEEEEEECCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHH
T ss_pred CcEEEEeeccCCccccccccCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHH
Confidence 4789999999 4654310 012 34567889999999 99999999999998888889999999999999
Q ss_pred HHHHHHHhCCCccCCCceEEEE
Q 002280 721 SAGVGQNLTNDETNEKGERLEE 742 (943)
Q Consensus 721 A~~Ai~~LnGr~~~~k~~~v~~ 742 (943)
|.+|+.+|||+.|+++.+.+..
T Consensus 81 A~~A~~~lng~~~~Gr~i~v~~ 102 (104)
T 1jmt_A 81 AEKAVIDLNNRWFNGQPIHAEL 102 (104)
T ss_dssp HHHHHHHHTTCEETTEECCEEE
T ss_pred HHHHHHHHCCCEECCEEEEEEE
Confidence 9999999999999999988754
No 90
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.39 E-value=3.1e-13 Score=122.09 Aligned_cols=77 Identities=18% Similarity=0.167 Sum_probs=65.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhh-hccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-c-cCCcccccc
Q 002280 463 MRRLCVENLPLSASEKALMEFLNNFL-LSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-C-DGCSFSGSI 539 (943)
Q Consensus 463 ~rtLfVgNLP~~vTEedL~elF~~~G-~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-L-nG~~l~Gr~ 539 (943)
+++|||+|||+.+|+++|+++|++|| .+.. ...+.+..++.++|||||+|.+.++|.+||+ + +++.|.|++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~------v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~ 74 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQARE------VRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQK 74 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSB------CCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEE------EEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEE
Confidence 46899999999999999999999998 3322 2245666789999999999999999999998 6 457899999
Q ss_pred ccccCC
Q 002280 540 LKIKRP 545 (943)
Q Consensus 540 LkV~rp 545 (943)
|.|...
T Consensus 75 i~V~~a 80 (91)
T 2lxi_A 75 VSMHYS 80 (91)
T ss_dssp EEEECC
T ss_pred EEEEEc
Confidence 999854
No 91
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=8.8e-13 Score=122.40 Aligned_cols=76 Identities=21% Similarity=0.309 Sum_probs=66.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-cc--CCccc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CD--GCSFS 536 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-Ln--G~~l~ 536 (943)
..+..+|||+|||+.+|+++|+++|++|| .|.++.+..++|||||+|.+.++|..|+. |+ +..|.
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG------------~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~ 80 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFG------------KVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLR 80 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHC------------CEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC------------CEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence 45678999999999999999999999998 45666666679999999999999999999 76 47899
Q ss_pred cccccccCCcc
Q 002280 537 GSILKIKRPKE 547 (943)
Q Consensus 537 Gr~LkV~rp~d 547 (943)
|++|.|.+.+.
T Consensus 81 Gr~l~V~~A~~ 91 (105)
T 1sjq_A 81 GQPIYIQFSNH 91 (105)
T ss_dssp TEECCBCCCSS
T ss_pred CEEEEEEEcCC
Confidence 99999987553
No 92
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=6.1e-13 Score=123.46 Aligned_cols=77 Identities=14% Similarity=0.101 Sum_probs=70.0
Q ss_pred EEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCC--CccCCeEEEEEEcccC
Q 002280 551 VAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNG--LKVGGQVLTAVQAVLD 628 (943)
Q Consensus 551 ~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG--~~~~gr~L~V~~A~~~ 628 (943)
.+|||+|||+.+++++|+++|++||.|..|.|+++ +|||||+|.+.++|.+|+..|++ ..|.|++|.|.+|.+.
T Consensus 17 ~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~ 92 (105)
T 1sjq_A 17 RVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK 92 (105)
T ss_dssp CEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC----CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCC
Confidence 39999999999999999999999999999999874 89999999999999999998864 7899999999998765
Q ss_pred CCc
Q 002280 629 GSI 631 (943)
Q Consensus 629 ~~~ 631 (943)
...
T Consensus 93 ~~~ 95 (105)
T 1sjq_A 93 ELK 95 (105)
T ss_dssp SCC
T ss_pred CCC
Confidence 443
No 93
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=7.9e-13 Score=119.45 Aligned_cols=76 Identities=14% Similarity=0.252 Sum_probs=71.1
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecC--CCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEccc
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 627 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~--~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~ 627 (943)
+|||+|||..+++++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|.+|+..|||..|.|+.|.|.+|.+
T Consensus 17 ~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 94 (95)
T 2cqc_A 17 CLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPSS 94 (95)
T ss_dssp CEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCSC
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecCC
Confidence 89999999999999999999999999999998874 45689999999999999999999999999999999998743
No 94
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.39 E-value=2e-13 Score=124.63 Aligned_cols=83 Identities=20% Similarity=0.270 Sum_probs=68.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCC----c
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGC----S 534 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~----~ 534 (943)
.....||||+|||+.+|+++|+++|++||.+. +..+ ..+.+..++.++|||||+|.+.++|..||. |||. .
T Consensus 6 ~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~-v~~v---~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~ 81 (95)
T 2lkz_A 6 HHHMDTIILRNIAPHTVVDSIMTALSPYASLA-VNNI---RLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLK 81 (95)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHSTTTCCCC-GGGE---ECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEE
T ss_pred CCccCEEEEeCCCCcCCHHHHHHHHHhhCCcc-EEEE---EEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCce
Confidence 34567999999999999999999999998411 1112 244566789999999999999999999999 9996 5
Q ss_pred cccccccccCCc
Q 002280 535 FSGSILKIKRPK 546 (943)
Q Consensus 535 l~Gr~LkV~rp~ 546 (943)
|.|++|.|..++
T Consensus 82 i~Gr~i~V~~Ak 93 (95)
T 2lkz_A 82 IDGKTIGVDFAK 93 (95)
T ss_dssp ETTEEEEEEECC
T ss_pred ECCEEEEEEEcc
Confidence 899999998655
No 95
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.38 E-value=9.7e-13 Score=122.49 Aligned_cols=80 Identities=21% Similarity=0.403 Sum_probs=73.8
Q ss_pred eEEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEccc
Q 002280 550 EVAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 627 (943)
Q Consensus 550 ~~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~ 627 (943)
..+|||+|||..+++++|+++|++||.|..|.|+.+ ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.+
T Consensus 26 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 105 (110)
T 1oo0_B 26 GWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFV 105 (110)
T ss_dssp BEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEccc
Confidence 349999999999999999999999999999999877 456789999999999999999999999999999999999876
Q ss_pred CC
Q 002280 628 DG 629 (943)
Q Consensus 628 ~~ 629 (943)
..
T Consensus 106 ~~ 107 (110)
T 1oo0_B 106 KG 107 (110)
T ss_dssp SS
T ss_pred CC
Confidence 44
No 96
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.38 E-value=8e-13 Score=121.14 Aligned_cols=76 Identities=18% Similarity=0.323 Sum_probs=71.8
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCCC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGS 630 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~~ 630 (943)
+|||+|||..+++++|+++|++||.|..|.++.+ ++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.+...
T Consensus 2 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 77 (101)
T 2hvz_A 2 KVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN---PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR 77 (101)
T ss_dssp EEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS---SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCC
Confidence 6999999999999999999999999999999877 799999999999999999999999999999999999977543
No 97
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.38 E-value=2.9e-13 Score=124.05 Aligned_cols=84 Identities=26% Similarity=0.305 Sum_probs=69.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeec-CCCeeeEEeCCHHHHHHHHH-ccCCcccccccc
Q 002280 464 RRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQR-EKGQAFVEFLTAEDASAALC-CDGCSFSGSILK 541 (943)
Q Consensus 464 rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~-skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~Lk 541 (943)
++|||+|||+.+|+++|+++|++||.+ ..+.+.. ++|||||+|.+.++|..|+. |||..|.|+.|.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i------------~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 68 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPL------------RTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVR 68 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCC------------SEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCe------------EEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECCcEEE
Confidence 489999999999999999999999843 3333322 69999999999999999999 999999999999
Q ss_pred ccCCccce--------------eEEEEEecCC
Q 002280 542 IKRPKEFV--------------EVAIFIGGIS 559 (943)
Q Consensus 542 V~rp~d~~--------------~~~LfV~NLp 559 (943)
|....... ..+|||+||+
T Consensus 69 V~~a~~~~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 69 VELSTGMPRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp EEESSSCCCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred EEEccCCCCcccCCCCCccccCCCceecCCCC
Confidence 98543211 2289999986
No 98
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.38 E-value=2.5e-12 Score=122.46 Aligned_cols=79 Identities=14% Similarity=0.222 Sum_probs=73.5
Q ss_pred EEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec-CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCC
Q 002280 551 VAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN-EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDG 629 (943)
Q Consensus 551 ~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d-~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~ 629 (943)
.+|||+|||..+++++|+++|+.||.|..|.|+.+ ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.+|.+..
T Consensus 36 ~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 115 (124)
T 2kt5_A 36 AKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQI 115 (124)
T ss_dssp EEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEECCTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCC
Confidence 39999999999999999999999999999999887 45679999999999999999999999999999999999986644
No 99
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.38 E-value=1e-12 Score=123.48 Aligned_cols=79 Identities=15% Similarity=0.342 Sum_probs=73.5
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecC--CCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDG 629 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~--~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~ 629 (943)
+|||+|||..+++++|+++|+.||.|..|.|+.+. +.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.+..
T Consensus 27 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 106 (115)
T 2cpz_A 27 NLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKN 106 (115)
T ss_dssp CEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCCSC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCCC
Confidence 89999999999999999999999999999998874 5668999999999999999999999999999999999987654
Q ss_pred C
Q 002280 630 S 630 (943)
Q Consensus 630 ~ 630 (943)
.
T Consensus 107 ~ 107 (115)
T 2cpz_A 107 D 107 (115)
T ss_dssp C
T ss_pred c
Confidence 3
No 100
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.38 E-value=1e-12 Score=119.62 Aligned_cols=88 Identities=20% Similarity=0.247 Sum_probs=75.3
Q ss_pred ccccccCCccceeEEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccC-
Q 002280 538 SILKIKRPKEFVEVAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVG- 616 (943)
Q Consensus 538 r~LkV~rp~d~~~~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~- 616 (943)
..+++.........+|||+|||..+++++|+++|++||.|..|.+..+ +|||||+|.+.++|.+|+..|||..|.
T Consensus 5 ~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~ 80 (97)
T 1why_A 5 SSGKIGYGKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG----DSFAYIQYESLDAAQAACAKMRGFPLGG 80 (97)
T ss_dssp CCCCCCCCCCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS----SCCEEEEESSHHHHHHHHHHHTTCBCSS
T ss_pred ccccccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC----CCEEEEEECCHHHHHHHHHHHCCCEeCC
Confidence 344444443333449999999999999999999999999999988753 889999999999999999999999999
Q ss_pred -CeEEEEEEcccCC
Q 002280 617 -GQVLTAVQAVLDG 629 (943)
Q Consensus 617 -gr~L~V~~A~~~~ 629 (943)
|+.|.|.++.+..
T Consensus 81 ~g~~l~V~~a~~~~ 94 (97)
T 1why_A 81 PDRRLRVDFAKSGP 94 (97)
T ss_dssp SSCBCEEEECCCCC
T ss_pred CCcEEEEEECCCCC
Confidence 9999999987643
No 101
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.38 E-value=1.1e-12 Score=118.70 Aligned_cols=75 Identities=19% Similarity=0.374 Sum_probs=70.6
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecC-CCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcc
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE-DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAV 626 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~-~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~ 626 (943)
+|||+|||..+++++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|.+|+..|||..|.|+.|.|.+|.
T Consensus 18 ~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 18 TVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp EEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 99999999999999999999999999999998874 4568999999999999999999999999999999999774
No 102
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=1e-12 Score=118.64 Aligned_cols=74 Identities=16% Similarity=0.332 Sum_probs=70.3
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecC--CCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEc
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQA 625 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~--~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A 625 (943)
+|||+|||..+++++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|.+|+..|||..|.|+.|.|.+|
T Consensus 18 ~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 18 TVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp SEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 89999999999999999999999999999998873 567899999999999999999999999999999999987
No 103
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.37 E-value=1.3e-12 Score=120.99 Aligned_cols=76 Identities=16% Similarity=0.245 Sum_probs=71.2
Q ss_pred EEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec-CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcc
Q 002280 551 VAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN-EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAV 626 (943)
Q Consensus 551 ~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d-~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~ 626 (943)
.+|||+|||..+++++|+++|++||.|..|.|+.+ ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.+|.
T Consensus 30 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 30 GKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 39999999999999999999999999999999887 45568999999999999999999999999999999999874
No 104
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.37 E-value=7.3e-13 Score=122.72 Aligned_cols=76 Identities=14% Similarity=0.277 Sum_probs=71.4
Q ss_pred EEEEecCCCCC------CHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCe-EEEEEE
Q 002280 552 AIFIGGISRTL------SSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQ-VLTAVQ 624 (943)
Q Consensus 552 ~LfV~NLp~~~------teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr-~L~V~~ 624 (943)
+|||+|||..+ ++++|+++|++||.|..|.|++.++.++|||||+|.+.++|.+|+..|||..|.|+ .|.|.+
T Consensus 17 ~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~ 96 (105)
T 2nlw_A 17 VIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNL 96 (105)
T ss_dssp EEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEEC
T ss_pred EEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEE
Confidence 89999999999 78999999999999999999866778899999999999999999999999999998 999998
Q ss_pred ccc
Q 002280 625 AVL 627 (943)
Q Consensus 625 A~~ 627 (943)
|..
T Consensus 97 a~~ 99 (105)
T 2nlw_A 97 FTD 99 (105)
T ss_dssp SCC
T ss_pred cch
Confidence 754
No 105
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.37 E-value=5.6e-13 Score=124.76 Aligned_cols=78 Identities=22% Similarity=0.352 Sum_probs=72.4
Q ss_pred EEEEecCCCCCCHHHHH---HHHhhcCCeeEEEEEecCC-----CCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEE
Q 002280 552 AIFIGGISRTLSSKMVM---EIVCAFGPLKAYHFEVNED-----HEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAV 623 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~---e~Fs~fG~I~~v~l~~d~~-----~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~ 623 (943)
+|||+|||+.+++++|+ ++|++||.|..|.|+.+.. .++|||||+|.+.++|.+|+..|||..|.|+.|.|.
T Consensus 17 ~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~ 96 (111)
T 2cpi_A 17 LVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKAS 96 (111)
T ss_dssp CEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred EEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEE
Confidence 89999999999999999 9999999999999988754 456999999999999999999999999999999999
Q ss_pred EcccCC
Q 002280 624 QAVLDG 629 (943)
Q Consensus 624 ~A~~~~ 629 (943)
+|.+..
T Consensus 97 ~a~~k~ 102 (111)
T 2cpi_A 97 LGTTKY 102 (111)
T ss_dssp SCCCCS
T ss_pred eccccc
Confidence 987654
No 106
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=7.9e-13 Score=122.44 Aligned_cols=76 Identities=12% Similarity=0.065 Sum_probs=70.9
Q ss_pred EEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecC-CCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEccc
Q 002280 551 VAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE-DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 627 (943)
Q Consensus 551 ~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~-~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~ 627 (943)
.+|||+|||+.+|+++|.++|++||.|..|.|+.+. +.++|||||+|.+.++|.+|+. ++|..|.|+.|.|.++..
T Consensus 12 ~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 12 RSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKDD 88 (103)
T ss_dssp GCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHHH
T ss_pred CEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEchH
Confidence 489999999999999999999999999999999874 5679999999999999999999 999999999999998754
No 107
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.37 E-value=1.4e-12 Score=121.33 Aligned_cols=79 Identities=28% Similarity=0.465 Sum_probs=73.4
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecC--CCCCCEEEEeecChhHHHHHHHHhC------CCccCCeEEEEE
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLN------GLKVGGQVLTAV 623 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~--~~skG~aFVeF~~~e~A~kAl~~Ln------G~~~~gr~L~V~ 623 (943)
+|||+|||..+++++|+++|+.||.|..|.|+.+. +.++|||||+|.+.++|.+|+..|| |..|.|+.|.|.
T Consensus 17 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~ 96 (111)
T 1x4h_A 17 TVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVD 96 (111)
T ss_dssp CEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEE
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEEE
Confidence 89999999999999999999999999999998873 5679999999999999999999999 999999999999
Q ss_pred EcccCCC
Q 002280 624 QAVLDGS 630 (943)
Q Consensus 624 ~A~~~~~ 630 (943)
++.+...
T Consensus 97 ~a~~~~~ 103 (111)
T 1x4h_A 97 LAVTRDE 103 (111)
T ss_dssp CCCCCCC
T ss_pred ECCCCcc
Confidence 9876543
No 108
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.37 E-value=3.9e-13 Score=118.30 Aligned_cols=71 Identities=15% Similarity=0.344 Sum_probs=66.6
Q ss_pred EEEEecCCCCC------CHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCe-EEEE
Q 002280 552 AIFIGGISRTL------SSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQ-VLTA 622 (943)
Q Consensus 552 ~LfV~NLp~~~------teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr-~L~V 622 (943)
+|||+|||..+ ++++|+++|++||.|..|.|++.++.++|||||+|.+.++|.+|+..|||..|.|+ +|.|
T Consensus 3 ~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 3 VIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp EEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 79999999999 77999999999999999998876778899999999999999999999999999999 8765
No 109
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=9e-13 Score=120.24 Aligned_cols=78 Identities=15% Similarity=0.326 Sum_probs=72.6
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCee-EEEEEecC--CCCCCEEEEeecChhHHHHHHHHhCCCccCCeE----EEEEE
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLK-AYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQV----LTAVQ 624 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~-~v~l~~d~--~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~----L~V~~ 624 (943)
+|||+|||..+++++|+++|++||.|. .|.|+.+. +.++|||||+|.+.++|.+|+..|||..|.|+. |.|.+
T Consensus 11 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~ 90 (99)
T 2div_A 11 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNY 90 (99)
T ss_dssp EEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEee
Confidence 899999999999999999999999999 99998874 567899999999999999999999999999999 99999
Q ss_pred cccCC
Q 002280 625 AVLDG 629 (943)
Q Consensus 625 A~~~~ 629 (943)
|.+..
T Consensus 91 a~~~~ 95 (99)
T 2div_A 91 ATYSG 95 (99)
T ss_dssp TTCCS
T ss_pred cCCCC
Confidence 86644
No 110
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.37 E-value=1.2e-12 Score=120.01 Aligned_cols=79 Identities=23% Similarity=0.318 Sum_probs=70.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHHccCCccccccc
Q 002280 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSIL 540 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~LnG~~l~Gr~L 540 (943)
...++|||+|||+.+|+++|+++|..||.+.. ..+.+..++.++|||||+|.+.++|..||.|||..|.|+.|
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-------~~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l 87 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-------LAVVDVRTGTNRKFGYVDFESAEDLEKALELTGLKVFGNEI 87 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-------CCCCEEEEETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-------EEEecCCCCCcCcEEEEEECCHHHHHHHHhcCCcEECCcEE
Confidence 45679999999999999999999999997543 25677788999999999999999999999999999999999
Q ss_pred cccCCc
Q 002280 541 KIKRPK 546 (943)
Q Consensus 541 kV~rp~ 546 (943)
.|..+.
T Consensus 88 ~V~~a~ 93 (101)
T 1fj7_A 88 KLEKPK 93 (101)
T ss_dssp EEECCS
T ss_pred EEEEcC
Confidence 998654
No 111
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.37 E-value=5e-13 Score=115.56 Aligned_cols=73 Identities=15% Similarity=0.310 Sum_probs=68.0
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEc
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQA 625 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A 625 (943)
+|||+|||..+++++|+++|++||.|..+.++.+ ++.++|||||+|.+.++|.+|+. |||..|.|+.|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 5899999999999999999999999999999887 45679999999999999999998 9999999999999865
No 112
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.36 E-value=1.1e-12 Score=119.76 Aligned_cols=74 Identities=18% Similarity=0.280 Sum_probs=70.1
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeE--------EEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEE
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKA--------YHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLT 621 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~--------v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~ 621 (943)
+|||+|||..+++++|+++|++||.|.. +.|+.+ ++.++|||||+|.+.++|.+|+..|||..|.|+.|.
T Consensus 15 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 94 (99)
T 2la6_A 15 TIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIK 94 (99)
T ss_dssp EEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 9999999999999999999999999999 999887 356789999999999999999999999999999999
Q ss_pred EEEc
Q 002280 622 AVQA 625 (943)
Q Consensus 622 V~~A 625 (943)
|.+|
T Consensus 95 V~~A 98 (99)
T 2la6_A 95 VSFA 98 (99)
T ss_dssp EEEC
T ss_pred EEec
Confidence 9987
No 113
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.36 E-value=1.2e-12 Score=124.64 Aligned_cols=77 Identities=10% Similarity=0.283 Sum_probs=71.9
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDG 629 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~ 629 (943)
+|||+|||..+++++|+++|++||.|..|.|+.+ ++.++|||||+|.+.++|.+|+ .|||..|.|+.|.|.++.+..
T Consensus 38 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~ 116 (124)
T 2jwn_A 38 SVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRTNM 116 (124)
T ss_dssp EEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSCCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCCCC
Confidence 9999999999999999999999999999999887 4667999999999999999999 799999999999999986543
No 114
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.36 E-value=1.6e-12 Score=120.16 Aligned_cols=80 Identities=23% Similarity=0.358 Sum_probs=73.6
Q ss_pred EEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCcc---CCeEEEEEEc
Q 002280 551 VAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKV---GGQVLTAVQA 625 (943)
Q Consensus 551 ~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~---~gr~L~V~~A 625 (943)
.+|||+|||..+++++|+++|++||.|..|.|+.+ ++.++|||||+|.+.++|.+|+..|||..+ .|+.|.|.++
T Consensus 14 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a 93 (106)
T 2dgp_A 14 IKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPA 93 (106)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEEC
Confidence 49999999999999999999999999999999887 456799999999999999999999999987 8999999999
Q ss_pred ccCCC
Q 002280 626 VLDGS 630 (943)
Q Consensus 626 ~~~~~ 630 (943)
.+...
T Consensus 94 ~~~~~ 98 (106)
T 2dgp_A 94 DSESR 98 (106)
T ss_dssp CCCSC
T ss_pred Ccccc
Confidence 76543
No 115
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.36 E-value=1.3e-12 Score=130.18 Aligned_cols=77 Identities=16% Similarity=0.265 Sum_probs=72.6
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcC--CeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEccc
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFG--PLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 627 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG--~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~ 627 (943)
+|||+|||+.+++++|+++|+.|| .|..|.|+.+ ++.++|||||+|.+.++|.+||..|||..|.|+.|.|.+|.+
T Consensus 57 ~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~~ 136 (156)
T 3n9u_C 57 AVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATR 136 (156)
T ss_dssp EEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEECCH
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEcCC
Confidence 999999999999999999999999 9999999988 566799999999999999999999999999999999999865
Q ss_pred C
Q 002280 628 D 628 (943)
Q Consensus 628 ~ 628 (943)
.
T Consensus 137 ~ 137 (156)
T 3n9u_C 137 Q 137 (156)
T ss_dssp H
T ss_pred C
Confidence 3
No 116
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=3.3e-12 Score=119.59 Aligned_cols=78 Identities=10% Similarity=0.125 Sum_probs=72.4
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecC-CCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE-DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDG 629 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~-~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~ 629 (943)
+|||+|||..+++++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++....
T Consensus 17 ~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 95 (114)
T 2do0_A 17 TVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERAL 95 (114)
T ss_dssp CEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcccCC
Confidence 89999999999999999999999999999998874 4568999999999999999999999999999999999986543
No 117
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.36 E-value=3.9e-13 Score=125.98 Aligned_cols=79 Identities=16% Similarity=0.147 Sum_probs=67.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcccccc
Q 002280 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~ 539 (943)
.+.++|||+|||+.+|+++|+++|++||.+..+ ..+.+..++.++|||||+|.+.++|..|+. |||..|.|+.
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v------~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~ 77 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEV------EILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNI 77 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEE------EEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEE------EEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 457899999999999999999999999863332 133444568899999999999999999999 9999999999
Q ss_pred ccccCC
Q 002280 540 LKIKRP 545 (943)
Q Consensus 540 LkV~rp 545 (943)
|+|...
T Consensus 78 i~V~~a 83 (110)
T 3s8s_A 78 IHAQLD 83 (110)
T ss_dssp CEEEEC
T ss_pred EEEEEC
Confidence 998743
No 118
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.36 E-value=1.1e-12 Score=122.32 Aligned_cols=78 Identities=18% Similarity=0.430 Sum_probs=72.4
Q ss_pred EEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecC--CCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccC
Q 002280 551 VAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLD 628 (943)
Q Consensus 551 ~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~--~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~ 628 (943)
.+|||+|||..+++++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.+.
T Consensus 27 ~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~k 106 (108)
T 2jrs_A 27 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 106 (108)
T ss_dssp EEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcccC
Confidence 499999999999999999999999999999998874 456899999999999999999999999999999999988653
No 119
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.36 E-value=1.3e-12 Score=124.73 Aligned_cols=80 Identities=19% Similarity=0.381 Sum_probs=74.4
Q ss_pred EEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccC
Q 002280 551 VAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLD 628 (943)
Q Consensus 551 ~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~ 628 (943)
.+|||+|||..+++++|+++|++||.|..|.|+.+ ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.+|.+.
T Consensus 23 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 102 (126)
T 3ex7_B 23 WILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVR 102 (126)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESEES
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEecCC
Confidence 39999999999999999999999999999999887 4567999999999999999999999999999999999999775
Q ss_pred CC
Q 002280 629 GS 630 (943)
Q Consensus 629 ~~ 630 (943)
..
T Consensus 103 ~~ 104 (126)
T 3ex7_B 103 GP 104 (126)
T ss_dssp SS
T ss_pred CC
Confidence 54
No 120
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.36 E-value=1.1e-12 Score=120.08 Aligned_cols=75 Identities=24% Similarity=0.331 Sum_probs=66.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccccc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr 538 (943)
....++|||+|||..+|+++|+++|..|| .|.++.+..++|||||+|.+.++|..|+. |||..|.|+
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G------------~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 91 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFG------------FILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGR 91 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTS------------CCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCC------------CEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 34568999999999999999999999988 34556666889999999999999999998 999999999
Q ss_pred cccccCCc
Q 002280 539 ILKIKRPK 546 (943)
Q Consensus 539 ~LkV~rp~ 546 (943)
.|+|.+.+
T Consensus 92 ~l~V~~a~ 99 (101)
T 2la4_A 92 NLRTGWGK 99 (101)
T ss_dssp ECCCCBCC
T ss_pred EEEEEecc
Confidence 99998654
No 121
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=1.5e-12 Score=122.00 Aligned_cols=77 Identities=16% Similarity=0.327 Sum_probs=72.0
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecC--CCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDG 629 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~--~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~ 629 (943)
+|||+|||..+++++|+++|+.||.|..|.|+.+. +.++|||||+|.+.++|.+|+ .|||..|.|+.|.|.++.+..
T Consensus 27 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~ 105 (114)
T 2cq4_A 27 TVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQAEK 105 (114)
T ss_dssp EEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHHHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCCCc
Confidence 99999999999999999999999999999998874 567999999999999999999 999999999999999986643
No 122
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.35 E-value=2e-12 Score=118.84 Aligned_cols=73 Identities=16% Similarity=0.215 Sum_probs=68.1
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCc--cCCeEEEEEEcccC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLK--VGGQVLTAVQAVLD 628 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~--~~gr~L~V~~A~~~ 628 (943)
+|||+|||..+++++|.++|++||.|..|.+++ .+|+|||+|.+.++|.+|+..|+|.. |.|++|.|.++.+.
T Consensus 23 ~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~----~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k 97 (100)
T 3r27_A 23 VVHIRGLIDGVVEADLVEALQEFGPISYVVVMP----KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQ 97 (100)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCS
T ss_pred EEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc----CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecccc
Confidence 899999999999999999999999999999875 58999999999999999999999876 78999999998653
No 123
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=9.9e-13 Score=120.95 Aligned_cols=78 Identities=23% Similarity=0.442 Sum_probs=72.9
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDG 629 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~ 629 (943)
+|||+|||..+++++|+++|++||.|..|.|+.+ ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.+|.+..
T Consensus 10 ~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 89 (104)
T 1p1t_A 10 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEK 89 (104)
T ss_dssp CEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTCTT
T ss_pred EEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCCcc
Confidence 8999999999999999999999999999999887 35568999999999999999999999999999999999987654
No 124
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=1.4e-12 Score=120.09 Aligned_cols=80 Identities=15% Similarity=0.355 Sum_probs=73.6
Q ss_pred EEEEEecCCCCCCHHHHHHHHhh-cCCeeEEEEEec-CCCCCCEEEEeecChhHHHHHHHHhCCCc-cCCeEEEEEEccc
Q 002280 551 VAIFIGGISRTLSSKMVMEIVCA-FGPLKAYHFEVN-EDHEEPCAFIEYVDQLVTPKAIAGLNGLK-VGGQVLTAVQAVL 627 (943)
Q Consensus 551 ~~LfV~NLp~~~teedL~e~Fs~-fG~I~~v~l~~d-~~~skG~aFVeF~~~e~A~kAl~~LnG~~-~~gr~L~V~~A~~ 627 (943)
.+|||+|||..+++++|+++|++ ||.|..|.|+.+ ++.++|||||+|.+.++|.+|+..|||.. |.|+.|.|.++.+
T Consensus 10 ~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~~ 89 (104)
T 2dhg_A 10 YSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIP 89 (104)
T ss_dssp CCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBCCC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEccC
Confidence 38999999999999999999999 999999999888 45568999999999999999999999999 9999999999866
Q ss_pred CCC
Q 002280 628 DGS 630 (943)
Q Consensus 628 ~~~ 630 (943)
...
T Consensus 90 ~~~ 92 (104)
T 2dhg_A 90 KAS 92 (104)
T ss_dssp CCS
T ss_pred CCc
Confidence 543
No 125
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=1.4e-12 Score=122.26 Aligned_cols=90 Identities=19% Similarity=0.314 Sum_probs=79.0
Q ss_pred CCCceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCC
Q 002280 652 KKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYGDSNISTIQACEGNENTASAGVGQNLTND 731 (943)
Q Consensus 652 ~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskFG~V~~V~I~r~~~g~~~G~~FVeF~~~e~A~~Ai~~LnGr 731 (943)
..++++|+|.||+++.++. .++.+|+++.++|+++|++||.|+.|.|+.. ..+|||||+|.+.++|.+|+..|||.
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~-~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~---~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFE-DDPLVLNEIREDLRVECSKFGQIRKLLLFDR---HPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCSCCEEEEESSCCTTHHH-HCSHHHHHHHHHHHHHGGGTSCCSEEEEETT---CTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCceEEEEEcCCCHHHhc-cCHHHHHHHHHHHHHHHHccCCEeEEEEecC---CCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 4579999999999988763 4667899999999999999999999987543 26899999999999999999999999
Q ss_pred ccCCCceEEEEecc
Q 002280 732 ETNEKGERLEEVTD 745 (943)
Q Consensus 732 ~~~~k~~~v~~~~~ 745 (943)
.|+++.+.+.....
T Consensus 88 ~~~gr~l~v~~a~~ 101 (112)
T 2dit_A 88 WFGGRQITAQAWDG 101 (112)
T ss_dssp EETTEECEEEECCS
T ss_pred EECCcEEEEEEeCC
Confidence 99999999877643
No 126
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=1.7e-12 Score=114.90 Aligned_cols=74 Identities=20% Similarity=0.249 Sum_probs=66.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-c-cCCcccc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-C-DGCSFSG 537 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-L-nG~~l~G 537 (943)
....++|||+|||+.+|+++|+++|.+|| .|..+.+..++|||||+|.+.++|..|+. | +|..+.|
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G------------~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g 76 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFG------------EIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNG 76 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTS------------CEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETT
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCC------------CEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECC
Confidence 35678999999999999999999999988 45666666789999999999999999999 8 9999999
Q ss_pred ccccccCC
Q 002280 538 SILKIKRP 545 (943)
Q Consensus 538 r~LkV~rp 545 (943)
++|+|.+.
T Consensus 77 ~~l~v~~a 84 (85)
T 2ytc_A 77 RRLNVKWG 84 (85)
T ss_dssp EECCEEEC
T ss_pred CEEEEEec
Confidence 99998754
No 127
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=2.8e-12 Score=119.21 Aligned_cols=78 Identities=18% Similarity=0.370 Sum_probs=71.8
Q ss_pred EEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCC
Q 002280 551 VAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDG 629 (943)
Q Consensus 551 ~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~ 629 (943)
.+|||+|||..+++++|+++|++||.|..|.|..+ +.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.+..
T Consensus 23 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 100 (109)
T 1x4a_A 23 CRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR-RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGR 100 (109)
T ss_dssp SEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS-SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC-CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcccCC
Confidence 39999999999999999999999999999998654 4478999999999999999999999999999999999986644
No 128
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.35 E-value=2.4e-12 Score=119.71 Aligned_cols=75 Identities=11% Similarity=0.069 Sum_probs=70.4
Q ss_pred EEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCC-----eEEEEEEc
Q 002280 551 VAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGG-----QVLTAVQA 625 (943)
Q Consensus 551 ~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~g-----r~L~V~~A 625 (943)
.+|||+|||+.+++++|+++|++||.|..|.|+.+ |||||+|.+.++|.+||..|||..|.| +.|.|.+|
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a 90 (108)
T 1x4c_A 16 NRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 90 (108)
T ss_dssp CEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEES
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeC
Confidence 39999999999999999999999999999999875 999999999999999999999999999 99999999
Q ss_pred ccCCC
Q 002280 626 VLDGS 630 (943)
Q Consensus 626 ~~~~~ 630 (943)
.+...
T Consensus 91 ~~~~~ 95 (108)
T 1x4c_A 91 GPRSP 95 (108)
T ss_dssp SCCSC
T ss_pred CCCCC
Confidence 77543
No 129
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.34 E-value=3.1e-13 Score=127.56 Aligned_cols=93 Identities=18% Similarity=0.337 Sum_probs=70.7
Q ss_pred ccccccccccccccccccccccccCCCccccCcccccccccccccC----CCCCCCCCCCCCccCCceEEEEecCHHHHH
Q 002280 836 IQLEHMSEENKSSAKEDLNLEEVNGNSEAFTGASNEMGMQSSAVEN----GDNENQDPNQGHIFEPGCVFVEYMRAEASC 911 (943)
Q Consensus 836 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~----~~~~~~~~d~~~i~~~g~v~v~f~~~~~a~ 911 (943)
+++.|+++.||+.+ .++.++.|..++++|+.+. |.+....++.+. ..|++||+|.+.++|+
T Consensus 5 ~ps~vv~L~Nm~~~-------------~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~--~~G~~fV~f~~~e~A~ 69 (114)
T 3s6e_A 5 LATQCFQLSNMFNP-------------QTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS--AQGNVYVKCPSIAAAI 69 (114)
T ss_dssp CCCSEEEEESSCCT-------------TTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC--TTCCEEEECSSHHHHH
T ss_pred CCCcEEEEECCCCh-------------HHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC--CcEEEEEEECCHHHHH
Confidence 55666666666443 4344445555555555554 666555555543 3699999999999999
Q ss_pred HHHHHhhcCccCCceEEEEeechhhHHhhcCC
Q 002280 912 MAAHSLHRRLFDDRIVAVEYIPLNLYRARFSK 943 (943)
Q Consensus 912 ~a~~~l~gr~f~~~~v~~~y~~~~~y~~~fp~ 943 (943)
+|+++||||||+||.|.|.|++...|+++||.
T Consensus 70 ~Ai~~lnG~~f~GR~i~v~~~~~~~y~~~fp~ 101 (114)
T 3s6e_A 70 AAVNALHGRWFAGKMITAAYVPLPTYHNLFPD 101 (114)
T ss_dssp HHHHHHTTCEETTEECEEEEECHHHHHHHCGG
T ss_pred HHHHHhCCCEECCEEEEEEEEcHHHHHHhCcc
Confidence 99999999999999999999999999999984
No 130
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=2.2e-12 Score=122.44 Aligned_cols=76 Identities=14% Similarity=0.104 Sum_probs=70.2
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhC--CCccCCeEEEEEEcccCC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLN--GLKVGGQVLTAVQAVLDG 629 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~Ln--G~~~~gr~L~V~~A~~~~ 629 (943)
+|||+|||+.+++++|+++|++||.|..|.|+++ +|||||+|.+.++|.+|+..|+ +..|.|++|.|.+|.+..
T Consensus 33 ~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~ 108 (119)
T 2ad9_A 33 VIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG----KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKE 108 (119)
T ss_dssp EEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG----GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSSS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCCC
Confidence 8999999999999999999999999999999875 8999999999999999999987 468999999999997655
Q ss_pred Cc
Q 002280 630 SI 631 (943)
Q Consensus 630 ~~ 631 (943)
..
T Consensus 109 ~~ 110 (119)
T 2ad9_A 109 LK 110 (119)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 131
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.34 E-value=1.6e-12 Score=119.54 Aligned_cols=75 Identities=23% Similarity=0.209 Sum_probs=65.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCc--cc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCS--FS 536 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~--l~ 536 (943)
..++++|||+|||+.+|+++|+++|++|| .|.++.+..++|||||+|.+.++|..|+. ||+.. |.
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG------------~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~ 85 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFG------------PISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIA 85 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGS------------CEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEET
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccC------------CEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeC
Confidence 45678999999999999999999999998 45566666789999999999999999999 99865 78
Q ss_pred cccccccCCc
Q 002280 537 GSILKIKRPK 546 (943)
Q Consensus 537 Gr~LkV~rp~ 546 (943)
|++|.|...+
T Consensus 86 Gr~i~V~~S~ 95 (100)
T 3r27_A 86 GHPAFVNYST 95 (100)
T ss_dssp TEEEEEEECS
T ss_pred CcEEEEEecc
Confidence 9999987554
No 132
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=4e-12 Score=113.99 Aligned_cols=74 Identities=18% Similarity=0.321 Sum_probs=69.3
Q ss_pred EEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCCC
Q 002280 551 VAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGS 630 (943)
Q Consensus 551 ~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~~ 630 (943)
.+|||+|||..+++++|+++|++||.|..|.++ +|||||+|.+.++|.+|+..|||..|.|+.|.|.++.+...
T Consensus 9 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 82 (90)
T 2dnq_A 9 VKLFIGNLPREATEQEIRSLFEQYGKVLECDII------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSK 82 (90)
T ss_dssp EEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCC
Confidence 499999999999999999999999999999986 68999999999999999999999999999999999876543
No 133
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=2.2e-12 Score=120.64 Aligned_cols=80 Identities=18% Similarity=0.262 Sum_probs=73.0
Q ss_pred EEEEEecCCCCCCHHHHHHHHhhcCCee--------EEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEE
Q 002280 551 VAIFIGGISRTLSSKMVMEIVCAFGPLK--------AYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVL 620 (943)
Q Consensus 551 ~~LfV~NLp~~~teedL~e~Fs~fG~I~--------~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L 620 (943)
.+|||+|||..+++++|+++|++||.|. .|.|+.+ ++.++|||||+|.+.++|.+|+..|||..|.|+.|
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 95 (113)
T 2cpe_A 16 SAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKL 95 (113)
T ss_dssp CEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCCEE
Confidence 3999999999999999999999999998 5888876 35679999999999999999999999999999999
Q ss_pred EEEEcccCCC
Q 002280 621 TAVQAVLDGS 630 (943)
Q Consensus 621 ~V~~A~~~~~ 630 (943)
.|.++.+...
T Consensus 96 ~V~~a~~~~~ 105 (113)
T 2cpe_A 96 KVSLARKKPP 105 (113)
T ss_dssp EEECSSCCCC
T ss_pred EEEECCCCCC
Confidence 9999876543
No 134
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.33 E-value=3.1e-12 Score=113.83 Aligned_cols=73 Identities=21% Similarity=0.393 Sum_probs=67.8
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecC--CCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEc
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQA 625 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~--~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A 625 (943)
+|||+|||..+++++|+++|++||.|..|.|+.+. +.++|||||+|.+.++|.+|+. ++|..|.|+.|.|.+|
T Consensus 13 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 13 KMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp EEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEeC
Confidence 99999999999999999999999999999998873 5668999999999999999996 5888999999999875
No 135
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.33 E-value=3.1e-12 Score=117.73 Aligned_cols=78 Identities=12% Similarity=0.182 Sum_probs=71.6
Q ss_pred EEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecC--CCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccC
Q 002280 551 VAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLD 628 (943)
Q Consensus 551 ~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~--~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~ 628 (943)
.+|||+|||..+++++|+++|++|| |..|.|+.+. +.++|||||+|.+.++|.+|+ .|||..|.|+.|.|.++.+.
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~ 93 (103)
T 2dng_A 16 YTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAEGR 93 (103)
T ss_dssp EEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEecCC
Confidence 4999999999999999999999997 9999999884 566899999999999999999 89999999999999998765
Q ss_pred CC
Q 002280 629 GS 630 (943)
Q Consensus 629 ~~ 630 (943)
..
T Consensus 94 ~~ 95 (103)
T 2dng_A 94 KQ 95 (103)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 136
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=2e-12 Score=119.23 Aligned_cols=78 Identities=14% Similarity=0.220 Sum_probs=72.0
Q ss_pred EEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecC---CCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEccc
Q 002280 551 VAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE---DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 627 (943)
Q Consensus 551 ~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~---~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~ 627 (943)
.+|||+|||..+++++|+++|+.|| |..|.|+.+. +.++|||||+|.+.++|.+|| .|||..|.|+.|.|.++.+
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 93 (104)
T 1wi8_A 16 YTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVADQ 93 (104)
T ss_dssp EEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEECCC
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEccC
Confidence 4999999999999999999999999 9999998874 567999999999999999999 9999999999999999876
Q ss_pred CCC
Q 002280 628 DGS 630 (943)
Q Consensus 628 ~~~ 630 (943)
...
T Consensus 94 ~~~ 96 (104)
T 1wi8_A 94 AQD 96 (104)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 137
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.33 E-value=5.3e-13 Score=119.96 Aligned_cols=78 Identities=13% Similarity=0.054 Sum_probs=63.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhh--hccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccccccc
Q 002280 464 RRLCVENLPLSASEKALMEFLNNFL--LSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSIL 540 (943)
Q Consensus 464 rtLfVgNLP~~vTEedL~elF~~~G--~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~L 540 (943)
.+|||+|||+.+|+++|+++|++|| .+..+ ..+.+..++.++|||||+|.+.++|..|+. |||..|.|+.|
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v------~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i 75 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEI------KFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNP 75 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCE------EEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEE------EEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEE
Confidence 4799999999999999999999998 43322 233444578899999999999999999998 99999999999
Q ss_pred cccCCcc
Q 002280 541 KIKRPKE 547 (943)
Q Consensus 541 kV~rp~d 547 (943)
+|.....
T Consensus 76 ~V~~~~~ 82 (90)
T 3p5t_L 76 VVTPSNK 82 (90)
T ss_dssp EECCC--
T ss_pred EEEECCC
Confidence 9986543
No 138
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.33 E-value=7.3e-13 Score=118.68 Aligned_cols=78 Identities=21% Similarity=0.347 Sum_probs=69.6
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecC--CCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDG 629 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~--~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~ 629 (943)
+|||+|||..+++++|+++|++||.|..|.++.+. +.++|||||+|.+.+ |.+|+..|||..|.|+.|.|.+|.+..
T Consensus 3 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~~ 81 (90)
T 2ki2_A 3 NIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPKK 81 (90)
T ss_dssp EEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC----
T ss_pred EEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 79999999999999999999999999999998873 567999999999999 999999999999999999999987644
Q ss_pred C
Q 002280 630 S 630 (943)
Q Consensus 630 ~ 630 (943)
.
T Consensus 82 ~ 82 (90)
T 2ki2_A 82 S 82 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 139
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.33 E-value=1.4e-12 Score=125.70 Aligned_cols=77 Identities=14% Similarity=0.254 Sum_probs=72.4
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLD 628 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~ 628 (943)
+|||+|||..+++++|+++|++||.|..|.|+.+ ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.+.
T Consensus 48 ~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~~ 126 (129)
T 2kxn_B 48 CLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITK 126 (129)
T ss_dssp CBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCSSS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCC
Confidence 8999999999999999999999999999999887 3567999999999999999999999999999999999988654
No 140
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=5.3e-13 Score=123.58 Aligned_cols=81 Identities=20% Similarity=0.201 Sum_probs=66.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHHccCCccccccc
Q 002280 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSIL 540 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~LnG~~l~Gr~L 540 (943)
...++|||+|||+.+|+++|+++|++||.+..+. .+.+.. +.++|||||+|.+.++|..||.++|..|.|+.|
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~------i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~~~~~~~~gr~l 81 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQ------MRRTLH-KAFKGSIFVVFDSIESAKKFVETPGQKYKETDL 81 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEE------EECCCT-TSCCCEEEEEESSHHHHHHHHTSSCCCCTTTTC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEE------EEECCC-CCCccEEEEEECCHHHHHHHHHcCCCEECCEEE
Confidence 3458999999999999999999999998543321 222222 778999999999999999999999999999999
Q ss_pred cccCCccc
Q 002280 541 KIKRPKEF 548 (943)
Q Consensus 541 kV~rp~d~ 548 (943)
.|.+..+|
T Consensus 82 ~V~~~~~~ 89 (103)
T 1s79_A 82 LILFKDDY 89 (103)
T ss_dssp EEEEHHHH
T ss_pred EEEEchHH
Confidence 99865543
No 141
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.33 E-value=1.6e-12 Score=112.63 Aligned_cols=73 Identities=21% Similarity=0.330 Sum_probs=68.7
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecC--CCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEc
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQA 625 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~--~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A 625 (943)
+|||+|||..+++++|+++|++||.|..+.++.+. +.++|||||+|.+.++|.+|+..++ ..+.|+.|.|.+|
T Consensus 2 ~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 69999999999999999999999999999998873 5679999999999999999999999 9999999999876
No 142
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=4.4e-12 Score=118.04 Aligned_cols=75 Identities=17% Similarity=0.382 Sum_probs=70.8
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCCC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGS 630 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~~ 630 (943)
+|||+|||..+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+|+..|||..|.|+.|.|.++.+...
T Consensus 27 ~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 101 (109)
T 1x4g_A 27 TVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE----KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPD 101 (109)
T ss_dssp EEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC----CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCC
Confidence 9999999999999999999999999999999875 89999999999999999999999999999999999876543
No 143
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.33 E-value=1.4e-12 Score=115.39 Aligned_cols=79 Identities=25% Similarity=0.303 Sum_probs=66.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcccccc
Q 002280 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~ 539 (943)
.+.++|||+|||+.+|+++|+++|++||.+..+ ..+.+..++.++|||||+|.+.++|..|+. |||..|.|++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v------~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 78 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDI------QIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRT 78 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEE------ECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEE------EEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 457899999999999999999999999853321 122333567789999999999999999998 9999999999
Q ss_pred ccccCC
Q 002280 540 LKIKRP 545 (943)
Q Consensus 540 LkV~rp 545 (943)
|+|..+
T Consensus 79 l~v~~a 84 (85)
T 3mdf_A 79 IRVNLA 84 (85)
T ss_dssp CEEEEC
T ss_pred EEEEEc
Confidence 998754
No 144
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=4e-12 Score=117.33 Aligned_cols=75 Identities=11% Similarity=0.090 Sum_probs=68.8
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHh--CCCccCCeEEEEEEcccCC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGL--NGLKVGGQVLTAVQAVLDG 629 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~L--nG~~~~gr~L~V~~A~~~~ 629 (943)
+|||+|||+.+++++|+++|++||.|..|.|+++ +|||||+|.+.++|.+|+..| ++..|.|++|.|.+|.+..
T Consensus 17 ~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~ 92 (101)
T 2cq1_A 17 VLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG----KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKE 92 (101)
T ss_dssp EEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT----TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCSS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC----CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCccc
Confidence 8999999999999999999999999999988764 899999999999999999977 5678999999999997654
Q ss_pred C
Q 002280 630 S 630 (943)
Q Consensus 630 ~ 630 (943)
.
T Consensus 93 ~ 93 (101)
T 2cq1_A 93 L 93 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 145
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=6.3e-12 Score=118.20 Aligned_cols=78 Identities=17% Similarity=0.278 Sum_probs=72.3
Q ss_pred EEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccC
Q 002280 551 VAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLD 628 (943)
Q Consensus 551 ~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~ 628 (943)
.+|||+|||..+++++|+++|++||.|..|.|+.+ ++.++|||||+|.+.++|.+|+..|++ .|.|+.|.|.+|.+.
T Consensus 18 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a~~~ 96 (116)
T 2cqd_A 18 TKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLAYLG 96 (116)
T ss_dssp SEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEESTTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEcccC
Confidence 39999999999999999999999999999999887 456799999999999999999999999 899999999999664
Q ss_pred C
Q 002280 629 G 629 (943)
Q Consensus 629 ~ 629 (943)
.
T Consensus 97 ~ 97 (116)
T 2cqd_A 97 A 97 (116)
T ss_dssp C
T ss_pred C
Confidence 3
No 146
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.33 E-value=1.3e-12 Score=118.94 Aligned_cols=77 Identities=12% Similarity=0.125 Sum_probs=70.1
Q ss_pred EEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEccc
Q 002280 551 VAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 627 (943)
Q Consensus 551 ~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~ 627 (943)
.+|||+|||..+++++|+++|++||.|..+.++.+ ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++..
T Consensus 16 ~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (98)
T 2cqp_A 16 TIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSG 94 (98)
T ss_dssp EEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCC
Confidence 38999999999999999999999999987766665 455689999999999999999999999999999999998754
No 147
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.33 E-value=2.1e-12 Score=121.73 Aligned_cols=74 Identities=16% Similarity=0.289 Sum_probs=70.3
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEc
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQA 625 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A 625 (943)
+|||+|||..+++++|+++|++||.|..|.|+.+ ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 42 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 42 NLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp EEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 9999999999999999999999999999999877 3567999999999999999999999999999999999876
No 148
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.32 E-value=3.7e-12 Score=123.61 Aligned_cols=80 Identities=18% Similarity=0.338 Sum_probs=74.1
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecC--CCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDG 629 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~--~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~ 629 (943)
+|||+|||..+++++|+++|+.||.|..|.|+.+. +.++|||||+|.+.++|.+|+..|||..|.|+.|.|.+|.+..
T Consensus 44 ~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 123 (139)
T 1u6f_A 44 NLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGH 123 (139)
T ss_dssp EEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSCCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 99999999999999999999999999999998874 4568999999999999999999999999999999999997755
Q ss_pred Cc
Q 002280 630 SI 631 (943)
Q Consensus 630 ~~ 631 (943)
..
T Consensus 124 ~~ 125 (139)
T 1u6f_A 124 QR 125 (139)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 149
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.32 E-value=1.4e-12 Score=120.54 Aligned_cols=74 Identities=16% Similarity=0.075 Sum_probs=68.0
Q ss_pred EEEEecCCC-CCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCC--ccCCeEEEEEEcccC
Q 002280 552 AIFIGGISR-TLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGL--KVGGQVLTAVQAVLD 628 (943)
Q Consensus 552 ~LfV~NLp~-~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~--~~~gr~L~V~~A~~~ 628 (943)
+|||+|||+ .+++++|+++|++||.|..|.|+++ +|||||+|.+.++|..|+..|||. .|.|++|.|.+|...
T Consensus 17 ~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 92 (102)
T 1x4d_A 17 VVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK----INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKY 92 (102)
T ss_dssp EEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS----SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCC
T ss_pred EEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC----CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCC
Confidence 899999999 9999999999999999999998764 689999999999999999999864 499999999999653
Q ss_pred C
Q 002280 629 G 629 (943)
Q Consensus 629 ~ 629 (943)
.
T Consensus 93 ~ 93 (102)
T 1x4d_A 93 K 93 (102)
T ss_dssp T
T ss_pred C
Confidence 3
No 150
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.32 E-value=3.6e-12 Score=118.27 Aligned_cols=75 Identities=11% Similarity=0.119 Sum_probs=68.4
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCC--ccCCeEEEEEEcccCC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGL--KVGGQVLTAVQAVLDG 629 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~--~~~gr~L~V~~A~~~~ 629 (943)
+|||+|||..+++++|+++|++||.|..|.|++ .+|||||+|.+.++|.+|+..|++. .|.|++|.|.++.+..
T Consensus 17 ~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~----~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~ 92 (104)
T 1wex_A 17 VVHVRGLCESVVEADLVEALEKFGTICYVMMMP----FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKR 92 (104)
T ss_dssp EEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET----TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCcc
Confidence 899999999999999999999999999998876 3899999999999999999988764 5999999999997654
Q ss_pred C
Q 002280 630 S 630 (943)
Q Consensus 630 ~ 630 (943)
.
T Consensus 93 ~ 93 (104)
T 1wex_A 93 I 93 (104)
T ss_dssp C
T ss_pred c
Confidence 4
No 151
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.32 E-value=3e-12 Score=116.95 Aligned_cols=75 Identities=15% Similarity=0.282 Sum_probs=70.5
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCCC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGS 630 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~~ 630 (943)
+|||+|||..+++++|+++|++||.|..|.+.++ +|||||+|.+.++|.+|+..|||..|.|+.|.|.++.+...
T Consensus 17 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~----kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 91 (99)
T 2cpj_A 17 RLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD----KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSAS 91 (99)
T ss_dssp EEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT----TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCSC
T ss_pred EEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC----CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCCC
Confidence 9999999999999999999999999999998764 89999999999999999999999999999999999977543
No 152
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.32 E-value=4.1e-12 Score=114.11 Aligned_cols=76 Identities=16% Similarity=0.255 Sum_probs=70.7
Q ss_pred EEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec-CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccC
Q 002280 551 VAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN-EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLD 628 (943)
Q Consensus 551 ~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d-~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~ 628 (943)
.+|||+|||..+++++|+++|+.| .|..|.|+.+ ++.++|||||+|.+.++|.+|+. |||..|.|+.|.|.+|.+.
T Consensus 11 ~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~~~ 87 (91)
T 2dgw_A 11 HTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREKSG 87 (91)
T ss_dssp CEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEESSC
T ss_pred cEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECCcC
Confidence 389999999999999999999999 8999999887 45669999999999999999999 9999999999999998664
No 153
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=5.3e-13 Score=118.25 Aligned_cols=80 Identities=15% Similarity=0.226 Sum_probs=67.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcccccc
Q 002280 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~ 539 (943)
.+.++|||+|||+.+|+++|+++|++||.+..+ ..+.+..++.++|||||+|.+.++|..|+. |||..|.|+.
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~------~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 76 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVST------KAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQM 76 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEE------EEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEE------EEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEE
Confidence 457899999999999999999999998853322 122333457789999999999999999999 9999999999
Q ss_pred ccccCCc
Q 002280 540 LKIKRPK 546 (943)
Q Consensus 540 LkV~rp~ 546 (943)
|++.++.
T Consensus 77 ~~~~~~~ 83 (85)
T 1x4e_A 77 AKQSGPS 83 (85)
T ss_dssp CCSSCCC
T ss_pred EeecCCC
Confidence 9998765
No 154
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=2.5e-12 Score=118.74 Aligned_cols=75 Identities=21% Similarity=0.257 Sum_probs=64.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-c--cCCccc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-C--DGCSFS 536 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-L--nG~~l~ 536 (943)
..+.++|||+|||+.+|+++|+++|++|| .|.++.+...+|||||+|.+.++|..|+. | ++..|.
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG------------~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~ 79 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFG------------KVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLR 79 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTS------------CEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC------------CEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence 35678999999999999999999999998 44555566679999999999999999998 6 467899
Q ss_pred cccccccCCc
Q 002280 537 GSILKIKRPK 546 (943)
Q Consensus 537 Gr~LkV~rp~ 546 (943)
|++|.|...+
T Consensus 80 Gr~l~V~~a~ 89 (101)
T 2cq1_A 80 NQPIYIQYSN 89 (101)
T ss_dssp TEECEEEECS
T ss_pred CcEEEEEEcC
Confidence 9999998654
No 155
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=2e-12 Score=119.15 Aligned_cols=81 Identities=23% Similarity=0.233 Sum_probs=67.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccccc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr 538 (943)
....++|||+|||+.+|+++|+++|++||.+..+ ..+.+..++.++|||||+|.+.++|..||. |||..|.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v------~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 85 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNT------HMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGK 85 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEE------ECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEE------EEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 3567899999999999999999999999854332 123334467889999999999999999999 999999999
Q ss_pred cccccCCc
Q 002280 539 ILKIKRPK 546 (943)
Q Consensus 539 ~LkV~rp~ 546 (943)
.|+|....
T Consensus 86 ~l~v~~a~ 93 (105)
T 1x5u_A 86 PIRVNKAS 93 (105)
T ss_dssp BCEEEETT
T ss_pred EEEEEECC
Confidence 99998644
No 156
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.32 E-value=1.5e-12 Score=112.59 Aligned_cols=74 Identities=12% Similarity=0.236 Sum_probs=63.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHHccCCccccccccccC
Q 002280 465 RLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSILKIKR 544 (943)
Q Consensus 465 tLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~LnG~~l~Gr~LkV~r 544 (943)
+|||+|||+.+|+++|+++|++||.+..+ ..+.+..++.++|||||+|.+.++|..|++|||..|.|++|.|.+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v------~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~v~~ 74 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDA------MLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHEINNKMVECKK 74 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEE------CCCBCSSSTTSCBEEEEECSCHHHHHHHHSSSCCCSSSCCCEEEC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEE------EEEecCCCCCcCcEEEEEECCHHHHHHHHHCCCCEECCEEEEEEe
Confidence 59999999999999999999999864332 123344467889999999999999999999999999999999875
No 157
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.32 E-value=1.4e-12 Score=122.91 Aligned_cols=80 Identities=19% Similarity=0.147 Sum_probs=66.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccccc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr 538 (943)
....++|||+|||+.+|+++|+++|++||.+..+ ..+.+..++.++|||||+|.+.++|..|+. |||..|.|+
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~------~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 110 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISA------KVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTK 110 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEE------EECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEE------EEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 4567899999999999999999999998854332 122333457889999999999999999999 999999999
Q ss_pred cccccCC
Q 002280 539 ILKIKRP 545 (943)
Q Consensus 539 ~LkV~rp 545 (943)
.|+|...
T Consensus 111 ~l~V~~a 117 (118)
T 2khc_A 111 RLKVQLK 117 (118)
T ss_dssp ECCEEEC
T ss_pred EEEEEec
Confidence 9998753
No 158
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.31 E-value=1.3e-12 Score=118.19 Aligned_cols=76 Identities=11% Similarity=0.132 Sum_probs=69.5
Q ss_pred EEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcc
Q 002280 551 VAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAV 626 (943)
Q Consensus 551 ~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~ 626 (943)
.+|||+|||..+++++|+++|++||.|..+.++.+ ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 16 TVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp EEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 39999999999999999999999999988777765 44568999999999999999999999999999999998764
No 159
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.31 E-value=2.6e-12 Score=118.54 Aligned_cols=79 Identities=11% Similarity=0.278 Sum_probs=72.7
Q ss_pred EEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccC
Q 002280 551 VAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLD 628 (943)
Q Consensus 551 ~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~ 628 (943)
.+|||+|||..+++++|+++|++||.|..|.|+.+ ++.++|||||+|.+.++|.+|+.. +|..|.|+.|.|.++.+.
T Consensus 17 ~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a~~~ 95 (105)
T 2dh8_A 17 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPCTPR 95 (105)
T ss_dssp SEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCSCCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEccCC
Confidence 39999999999999999999999999999999987 456789999999999999999998 999999999999988765
Q ss_pred CC
Q 002280 629 GS 630 (943)
Q Consensus 629 ~~ 630 (943)
..
T Consensus 96 ~~ 97 (105)
T 2dh8_A 96 GM 97 (105)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 160
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.31 E-value=2.9e-12 Score=120.30 Aligned_cols=74 Identities=12% Similarity=0.125 Sum_probs=68.4
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcC-CeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEccc
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFG-PLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 627 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG-~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~ 627 (943)
+|||+|||+.+++++|+++|++|| .|..+.|.. ..++|||||+|.+.++|.+|+..|||..|.|+.|.|.++..
T Consensus 30 ~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~--~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 30 RITMKNLPEGCSWQDLKDLARENSLETTFSSVNT--RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp EEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS--CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred EEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc--CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 999999999999999999999999 899988753 24799999999999999999999999999999999998743
No 161
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.31 E-value=3.5e-12 Score=122.62 Aligned_cols=77 Identities=13% Similarity=0.227 Sum_probs=69.9
Q ss_pred EEEEecCCCCCCHHHHH----HHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEccc
Q 002280 552 AIFIGGISRTLSSKMVM----EIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 627 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~----e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~ 627 (943)
+|||+|||+.+++++|+ ++|++||.|..|.+.. ++.++|||||+|.+.++|..|+..|||..|.|++|.|.+|.+
T Consensus 31 ~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~-~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~ 109 (127)
T 2a3j_A 31 VVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL-SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSET 109 (127)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC-CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc-CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEccC
Confidence 89999999999999865 7999999999988754 456799999999999999999999999999999999999866
Q ss_pred CC
Q 002280 628 DG 629 (943)
Q Consensus 628 ~~ 629 (943)
..
T Consensus 110 ~~ 111 (127)
T 2a3j_A 110 PQ 111 (127)
T ss_dssp CC
T ss_pred cc
Confidence 44
No 162
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.31 E-value=1.4e-12 Score=119.07 Aligned_cols=85 Identities=20% Similarity=0.234 Sum_probs=66.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccC---CcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHG---SLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSF 535 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~---~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l 535 (943)
.....+|||+|||+.+|+++|+++|+.||.+... .... ...+.+..++.++|||||+|.+.++|..|+. |||..|
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~-~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTN-KKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEE-TTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeec-cccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 3557899999999999999999999999864320 0000 1122333457789999999999999999998 999999
Q ss_pred ccccccccCC
Q 002280 536 SGSILKIKRP 545 (943)
Q Consensus 536 ~Gr~LkV~rp 545 (943)
.|+.|+|..+
T Consensus 89 ~g~~l~V~~A 98 (99)
T 2la6_A 89 SGNPIKVSFA 98 (99)
T ss_dssp SSSBCEEEEC
T ss_pred CCcEEEEEec
Confidence 9999998754
No 163
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=1.7e-12 Score=117.29 Aligned_cols=80 Identities=21% Similarity=0.280 Sum_probs=66.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcccccc
Q 002280 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~ 539 (943)
...++|||+|||+.+|+++|+++|++||.+..+ ..+.+..++.++|||||+|.+.++|..|+. |||..|.|++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v------~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 76 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNI------VLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRP 76 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEE------EEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEE------EEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcE
Confidence 457899999999999999999999998853322 122333457789999999999999999999 9999999999
Q ss_pred ccccCCc
Q 002280 540 LKIKRPK 546 (943)
Q Consensus 540 LkV~rp~ 546 (943)
|+|....
T Consensus 77 l~V~~a~ 83 (95)
T 2dnz_A 77 MRVGHVT 83 (95)
T ss_dssp CEEEESS
T ss_pred EEEEEcc
Confidence 9998654
No 164
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.31 E-value=2.3e-12 Score=117.75 Aligned_cols=76 Identities=22% Similarity=0.319 Sum_probs=67.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccccc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr 538 (943)
..+.++|||+|||+.+|+++|+++|++|| .|..+.+..++|||||+|.+.++|..|+. |||..|.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G------------~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~ 79 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYG------------KAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGK 79 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTC------------CCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTB
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcC------------CeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 35678999999999999999999999988 44556666789999999999999999998 999999999
Q ss_pred cccccCCcc
Q 002280 539 ILKIKRPKE 547 (943)
Q Consensus 539 ~LkV~rp~d 547 (943)
+|+|..+..
T Consensus 80 ~l~v~~a~~ 88 (99)
T 2cpj_A 80 QLRVRFACH 88 (99)
T ss_dssp CCEEEESSC
T ss_pred eEEEEEcCC
Confidence 999986543
No 165
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.31 E-value=4.8e-12 Score=125.42 Aligned_cols=79 Identities=14% Similarity=0.270 Sum_probs=73.6
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecC--CCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDG 629 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~--~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~ 629 (943)
+|||+|||..+++++|.++|++||.|..|.|+.+. +.++|||||+|.+.++|.+||..|||..|.|+.|.|.+|.+..
T Consensus 41 ~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 120 (156)
T 1h2v_Z 41 TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFK 120 (156)
T ss_dssp EEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESCCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 99999999999999999999999999999999884 4568999999999999999999999999999999999997644
Q ss_pred C
Q 002280 630 S 630 (943)
Q Consensus 630 ~ 630 (943)
.
T Consensus 121 ~ 121 (156)
T 1h2v_Z 121 E 121 (156)
T ss_dssp T
T ss_pred C
Confidence 3
No 166
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.31 E-value=2.7e-12 Score=124.54 Aligned_cols=81 Identities=20% Similarity=0.307 Sum_probs=67.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccccc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr 538 (943)
....++|||+|||..+|+++|+++|+.||.+..+ ..+.+..++.++|||||+|.+.++|..||. |||..|.|+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v------~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 112 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESV------KIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNK 112 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEE------EEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEE------EEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 4567899999999999999999999999853321 122333456789999999999999999999 999999999
Q ss_pred cccccCCc
Q 002280 539 ILKIKRPK 546 (943)
Q Consensus 539 ~LkV~rp~ 546 (943)
.|+|....
T Consensus 113 ~l~v~~a~ 120 (139)
T 1u6f_A 113 RLKVALAA 120 (139)
T ss_dssp EEEEEESS
T ss_pred EEEEEECC
Confidence 99998544
No 167
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.31 E-value=1.9e-12 Score=124.70 Aligned_cols=79 Identities=11% Similarity=0.177 Sum_probs=72.7
Q ss_pred EEEEEecCCCCCCHHHHHHHHhhcCCeeE--EEEEecC--CCCCCEEEEeecChhHHHHHHHHhCCC----ccCCeEEEE
Q 002280 551 VAIFIGGISRTLSSKMVMEIVCAFGPLKA--YHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGL----KVGGQVLTA 622 (943)
Q Consensus 551 ~~LfV~NLp~~~teedL~e~Fs~fG~I~~--v~l~~d~--~~skG~aFVeF~~~e~A~kAl~~LnG~----~~~gr~L~V 622 (943)
.+|||+|||+.+++++|+++|++||.|.. |+|+.+. +.++|||||+|.+. +|.+|+..|||. .|.|+.|.|
T Consensus 24 ~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V 102 (131)
T 2m2b_A 24 DTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINV 102 (131)
T ss_dssp CEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEEE
Confidence 39999999999999999999999999977 8998874 66799999999999 999999999999 999999999
Q ss_pred EEcccCCC
Q 002280 623 VQAVLDGS 630 (943)
Q Consensus 623 ~~A~~~~~ 630 (943)
.+|.+...
T Consensus 103 ~~a~~~~~ 110 (131)
T 2m2b_A 103 EFAKGSKR 110 (131)
T ss_dssp EECCCSCC
T ss_pred EECCCCCC
Confidence 99977544
No 168
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.31 E-value=4.5e-12 Score=118.94 Aligned_cols=76 Identities=16% Similarity=0.366 Sum_probs=71.1
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLD 628 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~ 628 (943)
+|||+|||..+++++|+++|+.||.|..|.|+.+ +.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.+.
T Consensus 10 ~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~-~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 85 (115)
T 3lqv_A 10 ILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT-PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNAN 85 (115)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS-TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 8999999999999999999999999999999875 445899999999999999999999999999999999998653
No 169
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.31 E-value=4.3e-12 Score=118.86 Aligned_cols=76 Identities=18% Similarity=0.145 Sum_probs=70.2
Q ss_pred eEEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCC
Q 002280 550 EVAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDG 629 (943)
Q Consensus 550 ~~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~ 629 (943)
..+|||+|||..+++++|+++|++||.|..|.|+. ++|||||+|.+.++|.+|+..|||..|.|+.|.|.+|....
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 85 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE----GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGV 85 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS----SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC----CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCc
Confidence 34999999999999999999999999999998764 68999999999999999999999999999999999986543
No 170
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.31 E-value=1e-11 Score=111.82 Aligned_cols=75 Identities=17% Similarity=0.251 Sum_probs=69.3
Q ss_pred eEEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCC
Q 002280 550 EVAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDG 629 (943)
Q Consensus 550 ~~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~ 629 (943)
..+|||+|||..+++++|+++|++||.|..|.++ ++||||+|.+.++|.+|+..|||..|.|+.|.|.++.+..
T Consensus 10 ~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 83 (92)
T 2dgt_A 10 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIV------KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 83 (92)
T ss_dssp SEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC------SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE------CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCC
Confidence 3499999999999999999999999999999985 4599999999999999999999999999999999997654
Q ss_pred C
Q 002280 630 S 630 (943)
Q Consensus 630 ~ 630 (943)
.
T Consensus 84 ~ 84 (92)
T 2dgt_A 84 R 84 (92)
T ss_dssp S
T ss_pred C
Confidence 4
No 171
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=4e-12 Score=119.11 Aligned_cols=78 Identities=10% Similarity=0.150 Sum_probs=71.2
Q ss_pred eEEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec-CCCCCCEEEEeecChhHHHHHHHHhCCCcc--------CCeEE
Q 002280 550 EVAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN-EDHEEPCAFIEYVDQLVTPKAIAGLNGLKV--------GGQVL 620 (943)
Q Consensus 550 ~~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d-~~~skG~aFVeF~~~e~A~kAl~~LnG~~~--------~gr~L 620 (943)
..+|||+|||..+++++|+++|+.||.|..|.|+.+ ++.++|||||+|.+.++|.+|+..|||..| .+++|
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l 104 (114)
T 1x5o_A 25 PTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPL 104 (114)
T ss_dssp TTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCB
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCce
Confidence 349999999999999999999999999999999887 455689999999999999999999999999 57789
Q ss_pred EEEEccc
Q 002280 621 TAVQAVL 627 (943)
Q Consensus 621 ~V~~A~~ 627 (943)
.|.+|.|
T Consensus 105 ~v~~a~p 111 (114)
T 1x5o_A 105 LCKFSGP 111 (114)
T ss_dssp EEEECCC
T ss_pred eEEccCC
Confidence 9988865
No 172
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.31 E-value=1.9e-12 Score=118.08 Aligned_cols=81 Identities=17% Similarity=0.175 Sum_probs=67.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhcc-CcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcccc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSS-GVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSG 537 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~-g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~G 537 (943)
....++|||+|||+.+|+++|+++|.+||.+. .+ ..+.+..++.++|||||+|.+.++|..|+. |||..|.|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v------~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 79 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSV------KIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPG 79 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEE------EEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESS
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEE------EEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCC
Confidence 35678999999999999999999999998643 22 123344567788999999999999999999 99999999
Q ss_pred cc----ccccCCc
Q 002280 538 SI----LKIKRPK 546 (943)
Q Consensus 538 r~----LkV~rp~ 546 (943)
+. |+|.+++
T Consensus 80 ~~~~~~l~v~~a~ 92 (99)
T 2div_A 80 ATPAKRFKLNYAT 92 (99)
T ss_dssp CSSCEECCEEETT
T ss_pred CCcceeEEEeecC
Confidence 99 8887554
No 173
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=4.7e-12 Score=116.39 Aligned_cols=79 Identities=23% Similarity=0.309 Sum_probs=64.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccccc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr 538 (943)
....++|||+|||+.+|+++|+++|++||.+..+. .+.+ .+.++|||||+|.+.++|..||. |||..|.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~------i~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 83 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCK------MITE--HTSNDPYCFVEFYEHRDAAAALAAMNGRKILGK 83 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEE------EECC--CCSSCCEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEE------EEec--CCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCC
Confidence 45678999999999999999999999998533211 1111 23468999999999999999999 999999999
Q ss_pred cccccCCc
Q 002280 539 ILKIKRPK 546 (943)
Q Consensus 539 ~LkV~rp~ 546 (943)
.|+|.+..
T Consensus 84 ~l~V~~a~ 91 (103)
T 2cqi_A 84 EVKVNWAT 91 (103)
T ss_dssp EEEEEECC
T ss_pred eEEEEECC
Confidence 99998654
No 174
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=4.6e-12 Score=115.34 Aligned_cols=76 Identities=20% Similarity=0.270 Sum_probs=65.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccccc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr 538 (943)
....++|||+|||+.+|+++|+++|.+||.+ . ..+.++.++|||||+|.+.++|..|+. |||..|.|+
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v----------~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 84 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSV----------P-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTD 84 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCC----------C-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSSS
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCE----------E-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 3457899999999999999999999999852 1 234467899999999999999999998 999999999
Q ss_pred cccccCCc
Q 002280 539 ILKIKRPK 546 (943)
Q Consensus 539 ~LkV~rp~ 546 (943)
.|.|....
T Consensus 85 ~l~V~~a~ 92 (97)
T 2e5j_A 85 TLRVALAR 92 (97)
T ss_dssp CCEEEECC
T ss_pred EEEEEEcC
Confidence 99998654
No 175
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=4e-12 Score=115.77 Aligned_cols=74 Identities=19% Similarity=0.378 Sum_probs=68.1
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLD 628 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~ 628 (943)
+|||+|||..+++++|+++|++||.|. +.++.+ .++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.+.
T Consensus 21 ~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 21 DVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ--GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp EEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred EEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC--CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 999999999999999999999999997 566543 57899999999999999999999999999999999998664
No 176
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.30 E-value=2.4e-12 Score=120.83 Aligned_cols=81 Identities=19% Similarity=0.187 Sum_probs=67.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccccc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr 538 (943)
....++|||+|||+.+|+++|+++|..||.+..+ ..+.+..++.++|||||+|.+.++|..||. |||..|.|+
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v------~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 95 (115)
T 2cpz_A 22 GPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSA------KVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMK 95 (115)
T ss_dssp CSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEE------EEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEE------EEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 3456899999999999999999999999864332 123333467888999999999999999998 999999999
Q ss_pred cccccCCc
Q 002280 539 ILKIKRPK 546 (943)
Q Consensus 539 ~LkV~rp~ 546 (943)
.|+|....
T Consensus 96 ~l~V~~a~ 103 (115)
T 2cpz_A 96 RLKVQLKR 103 (115)
T ss_dssp ECEEECCC
T ss_pred EEEEEEcC
Confidence 99998644
No 177
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=4.4e-12 Score=119.27 Aligned_cols=78 Identities=18% Similarity=0.292 Sum_probs=72.3
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDG 629 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~ 629 (943)
+|||+|||..+++++|+++|+.||.|..|.|+.+ ++.++|||||+|.+.++|.+||.. +|..|.|+.|.|.++.+..
T Consensus 29 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~~~ 107 (116)
T 1x4b_A 29 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVARE 107 (116)
T ss_dssp EEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSSCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCCCc
Confidence 9999999999999999999999999999999887 356799999999999999999997 9999999999999987654
Q ss_pred C
Q 002280 630 S 630 (943)
Q Consensus 630 ~ 630 (943)
.
T Consensus 108 ~ 108 (116)
T 1x4b_A 108 E 108 (116)
T ss_dssp C
T ss_pred c
Confidence 3
No 178
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.30 E-value=3.8e-12 Score=118.10 Aligned_cols=75 Identities=21% Similarity=0.158 Sum_probs=64.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccC--Cccc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDG--CSFS 536 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG--~~l~ 536 (943)
..+.++|||+|||+.+|+++|+++|++|| .|.++.+...+|||||+|.+.++|..|+. |++ ..|.
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG------------~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~ 79 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFG------------TICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIA 79 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTS------------CEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCC------------CEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceEC
Confidence 35578999999999999999999999998 44555555679999999999999999999 876 4699
Q ss_pred cccccccCCc
Q 002280 537 GSILKIKRPK 546 (943)
Q Consensus 537 Gr~LkV~rp~ 546 (943)
|++|.|....
T Consensus 80 Gr~l~V~~a~ 89 (104)
T 1wex_A 80 GQQAFFNYST 89 (104)
T ss_dssp SSBCEEEECS
T ss_pred CEEEEEEEcc
Confidence 9999998544
No 179
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.30 E-value=1.2e-12 Score=130.24 Aligned_cols=80 Identities=11% Similarity=0.097 Sum_probs=66.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhh--hccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcccc
Q 002280 461 RPMRRLCVENLPLSASEKALMEFLNNFL--LSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSG 537 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~elF~~~G--~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~G 537 (943)
...++|||+|||+.+|+++|+++|..|| .+..+ ..+.+..++.++|||||+|.+.++|..||. |||..|.|
T Consensus 53 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v------~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~G 126 (156)
T 3n9u_C 53 NRRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVEL------KFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNG 126 (156)
T ss_dssp ---CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEE------EEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEE------EEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 3568999999999999999999999998 43221 233445678899999999999999999999 99999999
Q ss_pred ccccccCCc
Q 002280 538 SILKIKRPK 546 (943)
Q Consensus 538 r~LkV~rp~ 546 (943)
+.|.|....
T Consensus 127 r~l~V~~a~ 135 (156)
T 3n9u_C 127 EKVDVRPAT 135 (156)
T ss_dssp EECEEEECC
T ss_pred eEeEEEEcC
Confidence 999998543
No 180
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=3.2e-12 Score=121.41 Aligned_cols=74 Identities=22% Similarity=0.307 Sum_probs=63.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-cc--CCcccc
Q 002280 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CD--GCSFSG 537 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-Ln--G~~l~G 537 (943)
.+.++|||+|||+.+|+++|+++|++||. |.++.+...+|||||+|.+.++|..|+. |+ +..|.|
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~------------V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~G 96 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGK------------VTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRG 96 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSC------------CCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------EEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 45689999999999999999999999984 4445555569999999999999999999 77 478999
Q ss_pred ccccccCCc
Q 002280 538 SILKIKRPK 546 (943)
Q Consensus 538 r~LkV~rp~ 546 (943)
++|.|...+
T Consensus 97 r~l~V~~a~ 105 (119)
T 2ad9_A 97 QPIYIQFSN 105 (119)
T ss_dssp BCCEEEECS
T ss_pred eEEEEEEcc
Confidence 999998654
No 181
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=4.2e-12 Score=117.84 Aligned_cols=80 Identities=18% Similarity=0.212 Sum_probs=72.1
Q ss_pred EEEEEecCCCCCCHHHHHHHHhhcCC-eeEEEEE-ecC--CCCCCEEEEeecChhHHHHHHHHhC--CCccCCeEEEEEE
Q 002280 551 VAIFIGGISRTLSSKMVMEIVCAFGP-LKAYHFE-VNE--DHEEPCAFIEYVDQLVTPKAIAGLN--GLKVGGQVLTAVQ 624 (943)
Q Consensus 551 ~~LfV~NLp~~~teedL~e~Fs~fG~-I~~v~l~-~d~--~~skG~aFVeF~~~e~A~kAl~~Ln--G~~~~gr~L~V~~ 624 (943)
.+|||+|||..+++++|+++|++||. |..|.|+ .+. +.++|||||+|.+.++|.+|+..|+ +..|.|+.|.|.+
T Consensus 9 ~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~ 88 (109)
T 2dis_A 9 CRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDW 88 (109)
T ss_dssp EEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEE
T ss_pred CEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEE
Confidence 48999999999999999999999998 9999887 553 4679999999999999999999996 5999999999999
Q ss_pred cccCCC
Q 002280 625 AVLDGS 630 (943)
Q Consensus 625 A~~~~~ 630 (943)
|.+...
T Consensus 89 a~~~~~ 94 (109)
T 2dis_A 89 AEPEID 94 (109)
T ss_dssp SCSSCS
T ss_pred cCCCCC
Confidence 976543
No 182
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.30 E-value=1.5e-12 Score=120.42 Aligned_cols=74 Identities=19% Similarity=0.253 Sum_probs=65.0
Q ss_pred CCCCeEEEcCCCC-CCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccC--Cccc
Q 002280 461 RPMRRLCVENLPL-SASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDG--CSFS 536 (943)
Q Consensus 461 ~~~rtLfVgNLP~-~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG--~~l~ 536 (943)
.+.++|||+|||+ .+|+++|+++|.+|| .|.++.+..++|||||+|.+.++|..|+. ||+ ..|.
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG------------~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~ 80 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFG------------VISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVF 80 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGS------------CEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEET
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcC------------CEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceEC
Confidence 4678999999999 999999999999998 45666666778999999999999999999 886 4699
Q ss_pred cccccccCCc
Q 002280 537 GSILKIKRPK 546 (943)
Q Consensus 537 Gr~LkV~rp~ 546 (943)
|++|.|..+.
T Consensus 81 Gr~l~V~~a~ 90 (102)
T 1x4d_A 81 GKPVRVHLSQ 90 (102)
T ss_dssp TEECEEEEEC
T ss_pred CcEEEEEECC
Confidence 9999998654
No 183
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=2.7e-12 Score=120.09 Aligned_cols=88 Identities=22% Similarity=0.214 Sum_probs=69.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcc--cccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQ--HVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFS 536 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~--~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~ 536 (943)
....++|||+|||+.+|+++|+++|..||.+.... ..+....+.+..++.++|||||+|.+.++|..||. |||..|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 45678999999999999999999999998643100 00011133444567889999999999999999999 9999999
Q ss_pred cccccccCCcc
Q 002280 537 GSILKIKRPKE 547 (943)
Q Consensus 537 Gr~LkV~rp~d 547 (943)
|+.|+|.++..
T Consensus 92 g~~l~V~~a~~ 102 (113)
T 2cpe_A 92 GSKLKVSLARK 102 (113)
T ss_dssp TEECEEECSSC
T ss_pred CCEEEEEECCC
Confidence 99999986543
No 184
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.30 E-value=3.1e-12 Score=116.47 Aligned_cols=80 Identities=21% Similarity=0.252 Sum_probs=66.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeee---eecCCCeeeEEeCCHHHHHHHHH-ccCCccc
Q 002280 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCV---IQREKGQAFVEFLTAEDASAALC-CDGCSFS 536 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~---~~~skGyAFVeF~s~edA~~Al~-LnG~~l~ 536 (943)
.+.++|||+|||+.+|+++|+++|+.||.+..+ ..+.+.. ++.++|||||+|.+.++|..||. |||..|.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v------~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 76 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSC------TISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVD 76 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEE------EEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEE------EEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeC
Confidence 457899999999999999999999999853321 1222223 45789999999999999999999 9999999
Q ss_pred cccccccCCc
Q 002280 537 GSILKIKRPK 546 (943)
Q Consensus 537 Gr~LkV~rp~ 546 (943)
|+.|.|....
T Consensus 77 g~~l~V~~a~ 86 (98)
T 2cpf_A 77 GHKLEVRISE 86 (98)
T ss_dssp TEECEEECSS
T ss_pred CeEEEEEEcc
Confidence 9999998654
No 185
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=6.5e-12 Score=117.70 Aligned_cols=80 Identities=30% Similarity=0.402 Sum_probs=68.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcccccc
Q 002280 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~ 539 (943)
.+.++|||+|||+.+|+++|+++|..||.+..+ ...++..++.++|||||+|.+.++|..||. |||..|.|++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~------~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 96 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGP------PIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKI 96 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSS------CCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccce------EEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 456899999999999999999999999974332 123444578899999999999999999999 9999999999
Q ss_pred ccccCCc
Q 002280 540 LKIKRPK 546 (943)
Q Consensus 540 LkV~rp~ 546 (943)
|.|....
T Consensus 97 l~v~~a~ 103 (115)
T 2cpx_A 97 LVIEFGK 103 (115)
T ss_dssp CEEEECC
T ss_pred EEEEEcc
Confidence 9998644
No 186
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.30 E-value=8.7e-12 Score=113.86 Aligned_cols=70 Identities=17% Similarity=0.268 Sum_probs=66.9
Q ss_pred EEEEecCCC-CCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEccc
Q 002280 552 AIFIGGISR-TLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 627 (943)
Q Consensus 552 ~LfV~NLp~-~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~ 627 (943)
+|||+|||. .+++++|+++|++||.|..|.| .+|||||+|.+.++|.+|+..|||..|.|+.|.|.++.+
T Consensus 24 ~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 24 RLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI------KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSS 94 (97)
T ss_dssp EEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE------CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCC
T ss_pred EEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE------eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCC
Confidence 999999998 9999999999999999999988 489999999999999999999999999999999998855
No 187
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.30 E-value=1.8e-12 Score=118.85 Aligned_cols=75 Identities=15% Similarity=0.236 Sum_probs=70.1
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecC---CCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE---DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLD 628 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~---~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~ 628 (943)
+|||+|||..+++++|+++|+.|| |..|.|+.+. +.++|||||+|.+.++|.+|+ .|||..|.|+.|.|.+|.+.
T Consensus 21 ~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~a~~~ 98 (100)
T 2j76_E 21 TAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVADQA 98 (100)
T ss_dssp EEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEECCCS
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEeccCC
Confidence 999999999999999999999999 9999998763 567999999999999999999 89999999999999988653
No 188
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.30 E-value=1.7e-12 Score=114.13 Aligned_cols=72 Identities=17% Similarity=0.271 Sum_probs=61.4
Q ss_pred CeEEEcCCCCCC------CHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccc
Q 002280 464 RRLCVENLPLSA------SEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFS 536 (943)
Q Consensus 464 rtLfVgNLP~~v------TEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~ 536 (943)
++|||+|||+.+ |+++|+++|++||.+..+ .+. ..++.++|||||+|.+.++|..|+. |||..|.
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v-------~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~ 73 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITND-------FYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD 73 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEE-------ECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCS
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEE-------Eec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccC
Confidence 689999999999 789999999999864332 111 3467889999999999999999999 9999999
Q ss_pred cc-ccccc
Q 002280 537 GS-ILKIK 543 (943)
Q Consensus 537 Gr-~LkV~ 543 (943)
|+ +|+|.
T Consensus 74 g~~~l~V~ 81 (81)
T 2krb_A 74 KQHTFRVN 81 (81)
T ss_dssp SSSCCCCC
T ss_pred CceeEEeC
Confidence 99 99873
No 189
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.30 E-value=1.2e-12 Score=116.52 Aligned_cols=79 Identities=18% Similarity=0.258 Sum_probs=66.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHHccCCcccccc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSI 539 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~LnG~~l~Gr~ 539 (943)
....++|||+|||+.+|+++|+++|++||.+..+ ..+.+..++.++|||||+|.+.++|..|+.+++..|.|+.
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v------~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~ 81 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDC------TIKMDPNTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRV 81 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEE------EEEECTTTCCEEEEEEEEESSTHHHHHHHHSSCEEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEE------EEeecCCCCccccEEEEEECCHHHHHHHHHhCCCEECCEE
Confidence 4567899999999999999999999999853332 1223334577899999999999999999998888999999
Q ss_pred ccccC
Q 002280 540 LKIKR 544 (943)
Q Consensus 540 LkV~r 544 (943)
|.|.+
T Consensus 82 i~v~~ 86 (87)
T 3s7r_A 82 IDPKK 86 (87)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 98864
No 190
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.30 E-value=3.6e-12 Score=116.75 Aligned_cols=72 Identities=19% Similarity=0.323 Sum_probs=68.2
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEccc
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 627 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~ 627 (943)
+|||+|||..+++++|+++|+.||.|..|.+.. ++|||||+|.+.++|.+|+..|||..|.|+.|.|.+|.+
T Consensus 29 ~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 29 TAYIGNIPHFATEADLIPLFQNFGFILDFKHYP----EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred EEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec----CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 899999999999999999999999999999873 689999999999999999999999999999999988754
No 191
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.29 E-value=1.9e-12 Score=125.96 Aligned_cols=76 Identities=13% Similarity=0.145 Sum_probs=70.3
Q ss_pred EEEEEecCCCCCCHHHHHHHHhhcCC---eeEEEEEecC-CCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcc
Q 002280 551 VAIFIGGISRTLSSKMVMEIVCAFGP---LKAYHFEVNE-DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAV 626 (943)
Q Consensus 551 ~~LfV~NLp~~~teedL~e~Fs~fG~---I~~v~l~~d~-~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~ 626 (943)
.+|||+|||+.+|+++|+++|+.||. |..|.|+.+. +.++|||||+|.+.++|.+||. |||..|+|+.|.|.++.
T Consensus 45 ~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~a~ 123 (136)
T 2hgl_A 45 FVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFKSH 123 (136)
T ss_dssp CEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEECC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEECC
Confidence 38999999999999999999999999 8889998874 5679999999999999999999 99999999999999875
Q ss_pred c
Q 002280 627 L 627 (943)
Q Consensus 627 ~ 627 (943)
+
T Consensus 124 ~ 124 (136)
T 2hgl_A 124 R 124 (136)
T ss_dssp H
T ss_pred h
Confidence 4
No 192
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=3.4e-12 Score=115.30 Aligned_cols=80 Identities=26% Similarity=0.346 Sum_probs=66.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcccccc
Q 002280 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~ 539 (943)
.+.++|||+|||+.+|+++|+++|..||.+..+ ..+.+..++.++|||||+|.+.++|..|+. |||..|.|++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v------~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 86 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADV------SIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRR 86 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEE------EEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEE------EEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 456899999999999999999999999853221 122333446788999999999999999999 9999999999
Q ss_pred ccccCCc
Q 002280 540 LKIKRPK 546 (943)
Q Consensus 540 LkV~rp~ 546 (943)
|+|..++
T Consensus 87 l~v~~a~ 93 (95)
T 2cqc_A 87 IRVSGPS 93 (95)
T ss_dssp EEEECCS
T ss_pred EEEEecC
Confidence 9998654
No 193
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.29 E-value=2.1e-12 Score=117.31 Aligned_cols=79 Identities=22% Similarity=0.343 Sum_probs=65.7
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccccccc
Q 002280 462 PMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSIL 540 (943)
Q Consensus 462 ~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~L 540 (943)
+.++|||+|||..+|+++|+++|++||.+..+ ..+.+..++.++|||||+|.+.++|..|+. |||..|.|+.|
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v------~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 74 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINL------KMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFL 74 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEE------ECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEE------EEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEE
Confidence 35799999999999999999999999853322 122333457789999999999999999998 99999999999
Q ss_pred cccCCc
Q 002280 541 KIKRPK 546 (943)
Q Consensus 541 kV~rp~ 546 (943)
.|....
T Consensus 75 ~V~~a~ 80 (96)
T 2x1f_A 75 KCGYSS 80 (96)
T ss_dssp EEEECS
T ss_pred EEEEcC
Confidence 998544
No 194
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=2.7e-12 Score=116.27 Aligned_cols=81 Identities=17% Similarity=0.171 Sum_probs=67.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcccccc
Q 002280 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~ 539 (943)
.+.++|||+|||+.+|+++|+++|++||.+..+. ..+.+..++.++|||||+|.+.++|..|+. |||..|.|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~-----~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 77 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTP-----KIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRP 77 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCC-----EECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEE-----EEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 3568999999999999999999999998643320 122333567889999999999999999999 9999999999
Q ss_pred ccccCCc
Q 002280 540 LKIKRPK 546 (943)
Q Consensus 540 LkV~rp~ 546 (943)
|+|....
T Consensus 78 l~v~~a~ 84 (96)
T 1x5t_A 78 ITVSYAF 84 (96)
T ss_dssp CEEEESC
T ss_pred EEEEEec
Confidence 9998543
No 195
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.29 E-value=7.6e-12 Score=116.60 Aligned_cols=72 Identities=24% Similarity=0.377 Sum_probs=68.1
Q ss_pred EEEEecCCCC-CCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCC
Q 002280 552 AIFIGGISRT-LSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDG 629 (943)
Q Consensus 552 ~LfV~NLp~~-~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~ 629 (943)
+|||+|||.. +++++|+++|++||.|..|.| .+|||||+|.+.++|.+|+..|||..|.|+.|.|.++.+..
T Consensus 29 ~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 101 (110)
T 1wf1_A 29 RVFIGNLNTALVKKSDVETIFSKYGRVAGCSV------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEPK 101 (110)
T ss_dssp EEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCCC
T ss_pred EEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCC
Confidence 9999999999 999999999999999999988 58999999999999999999999999999999999986533
No 196
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.29 E-value=2.4e-12 Score=117.20 Aligned_cols=80 Identities=18% Similarity=0.251 Sum_probs=67.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcccccc
Q 002280 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~ 539 (943)
...++|||+|||+.+|+++|+++|.+||.+..+ ..+.+..++.++|||||+|.+.++|.+||. |||..|.|+.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~------~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 86 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGS------VCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRK 86 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTT------CEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccce------EEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 456799999999999999999999998864321 244555677889999999999999999998 9999999999
Q ss_pred ccccCCc
Q 002280 540 LKIKRPK 546 (943)
Q Consensus 540 LkV~rp~ 546 (943)
|+|....
T Consensus 87 l~V~~a~ 93 (98)
T 2cqp_A 87 VKLVLGS 93 (98)
T ss_dssp CEEEESS
T ss_pred EEEEEcC
Confidence 9998654
No 197
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=5.3e-12 Score=111.67 Aligned_cols=71 Identities=21% Similarity=0.426 Sum_probs=67.5
Q ss_pred EEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHh-CCCccCCeEEEEEEc
Q 002280 551 VAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGL-NGLKVGGQVLTAVQA 625 (943)
Q Consensus 551 ~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~L-nG~~~~gr~L~V~~A 625 (943)
.+|||+|||..+++++|+++|++||.|..|.++++ +|||||+|.+.++|.+|+..| +|..|.|+.|.|.+|
T Consensus 13 ~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~----kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 13 TTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR----QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp CCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG----GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred cEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC----CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 48999999999999999999999999999999874 899999999999999999999 999999999999886
No 198
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.29 E-value=5.8e-12 Score=114.59 Aligned_cols=74 Identities=22% Similarity=0.250 Sum_probs=65.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccc--c
Q 002280 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFS--G 537 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~--G 537 (943)
.+.++|||+|||+.+|+++|+++|++|| .|..+.+...+|||||+|.+.++|..|+. |||..|. |
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G------------~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g 82 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFG------------SIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPD 82 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTS------------CEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC------------CeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCC
Confidence 4568999999999999999999999988 44555555669999999999999999999 9999999 9
Q ss_pred ccccccCCc
Q 002280 538 SILKIKRPK 546 (943)
Q Consensus 538 r~LkV~rp~ 546 (943)
+.|+|....
T Consensus 83 ~~l~V~~a~ 91 (97)
T 1why_A 83 RRLRVDFAK 91 (97)
T ss_dssp CBCEEEECC
T ss_pred cEEEEEECC
Confidence 999998654
No 199
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.29 E-value=1.9e-12 Score=120.73 Aligned_cols=82 Identities=24% Similarity=0.314 Sum_probs=67.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccccc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr 538 (943)
....++|||+|||+.+|+++|+++|+.||.+..+ ..+.+..++.++|||||+|.+.++|..|+. |||..|.|+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v------~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~ 96 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESI------QLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGR 96 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEE------EEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEE------EEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 4567899999999999999999999998853321 122333456789999999999999999998 999999999
Q ss_pred cccccCCcc
Q 002280 539 ILKIKRPKE 547 (943)
Q Consensus 539 ~LkV~rp~d 547 (943)
.|+|...+.
T Consensus 97 ~l~V~~a~~ 105 (108)
T 2jrs_A 97 PMKVGHVTE 105 (108)
T ss_dssp CCEEECSCS
T ss_pred EEEEEEccc
Confidence 999986543
No 200
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=4.3e-12 Score=114.46 Aligned_cols=80 Identities=20% Similarity=0.271 Sum_probs=65.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccccc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr 538 (943)
....++|||+|||+.+|+++|+++|++||.+..+ ..+.+..++.++|||||+|.+.++|..|+. |||..|.|+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v------~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 86 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKV------TIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGR 86 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEE------EECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE------EEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCc
Confidence 3457899999999999999999999998853321 122333447789999999999999999998 999999999
Q ss_pred cccccCC
Q 002280 539 ILKIKRP 545 (943)
Q Consensus 539 ~LkV~rp 545 (943)
+|+|...
T Consensus 87 ~l~v~~a 93 (94)
T 2e5h_A 87 VIKASIA 93 (94)
T ss_dssp EEEEEEC
T ss_pred EEEEEec
Confidence 9998754
No 201
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=1e-11 Score=111.40 Aligned_cols=74 Identities=22% Similarity=0.278 Sum_probs=68.7
Q ss_pred EEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCCC
Q 002280 551 VAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGS 630 (943)
Q Consensus 551 ~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~~ 630 (943)
.+|||+|||..+++++|+++|++||.|..|.|+ ++||||+|.+.++|.+|+..|||..|.|+.|.|.++.+...
T Consensus 10 ~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 83 (90)
T 2dnp_A 10 WKIFVGNVSAACTSQELRSLFERRGRVIECDVV------KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQK 83 (90)
T ss_dssp CCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC------SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE------CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCCC
Confidence 389999999999999999999999999999986 45999999999999999999999999999999999976543
No 202
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=8e-12 Score=116.13 Aligned_cols=78 Identities=24% Similarity=0.308 Sum_probs=64.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccccc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr 538 (943)
....++|||+|||+.+|+++|+++|++||.+..+ .-...+.++|||||+|.+.++|..||. ||+..|.|+
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~---------~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 89 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDI---------DLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGY 89 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEE---------EECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEE---------EEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 3457899999999999999999999999853221 111234578999999999999999997 999999999
Q ss_pred cccccCCc
Q 002280 539 ILKIKRPK 546 (943)
Q Consensus 539 ~LkV~rp~ 546 (943)
.|+|...+
T Consensus 90 ~l~V~~a~ 97 (109)
T 1x4a_A 90 RLRVEFPR 97 (109)
T ss_dssp ECEEECCC
T ss_pred EEEEEEcc
Confidence 99998654
No 203
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=2.1e-12 Score=118.38 Aligned_cols=81 Identities=26% Similarity=0.308 Sum_probs=68.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccccc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr 538 (943)
....++|||+|||+.+|+++|+++|++||.+..+ ..+.+..++.++|||||+|.+.++|..|+. |||..|.|+
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v------~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 82 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDI------QIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGR 82 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCE------ECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEE------EEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 3567899999999999999999999999864332 123344567889999999999999999998 999999999
Q ss_pred cccccCCc
Q 002280 539 ILKIKRPK 546 (943)
Q Consensus 539 ~LkV~rp~ 546 (943)
.|.|....
T Consensus 83 ~l~V~~a~ 90 (102)
T 2cqb_A 83 TIRVNLAK 90 (102)
T ss_dssp EEEEEECC
T ss_pred EEEEEeCC
Confidence 99998543
No 204
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.29 E-value=7e-12 Score=117.01 Aligned_cols=77 Identities=19% Similarity=0.293 Sum_probs=71.1
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecC--CCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDG 629 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~--~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~ 629 (943)
+|||+|||..+++++|+++|+.||.|..|.|+.+. +.++|||||+|.+.++|.+|+..+ |..|.|+.|.|.++.+..
T Consensus 27 ~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a~~~~ 105 (109)
T 2rs2_A 27 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVAFPRR 105 (109)
T ss_dssp CEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEECCCCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEccCCC
Confidence 99999999999999999999999999999998873 677999999999999999999976 599999999999987643
No 205
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.29 E-value=6e-12 Score=117.34 Aligned_cols=72 Identities=25% Similarity=0.392 Sum_probs=68.3
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDG 629 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~ 629 (943)
+|||+|||..+++++|+++|++||.|..|.|. +|||||+|.+.++|.+|+..|||..|.|+.|.|.++.+..
T Consensus 33 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 104 (108)
T 2jvo_A 33 RLFVRPFPLDVQESELNEIFGPFGPMKEVKIL------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLPA 104 (108)
T ss_dssp EEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCCC
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCC
Confidence 99999999999999999999999999999986 7999999999999999999999999999999999886543
No 206
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.29 E-value=3.1e-12 Score=120.13 Aligned_cols=77 Identities=21% Similarity=0.242 Sum_probs=64.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhh-hccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcccc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFL-LSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSG 537 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G-~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~G 537 (943)
.+...+|||+|||+.+|+++|+++|.+|| .+.. +.+....++|||||+|.+.++|..||. |||..|.|
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~----------v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~G 94 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTF----------SSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRG 94 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSE----------EECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEE----------EEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 34567999999999999999999999998 4221 122224689999999999999999998 99999999
Q ss_pred ccccccCCc
Q 002280 538 SILKIKRPK 546 (943)
Q Consensus 538 r~LkV~rp~ 546 (943)
+.|+|....
T Consensus 95 r~i~V~~a~ 103 (111)
T 2jvr_A 95 SVITVERDD 103 (111)
T ss_dssp EEEEEEESC
T ss_pred eEEEEEECC
Confidence 999998654
No 207
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.29 E-value=1.4e-12 Score=115.84 Aligned_cols=80 Identities=19% Similarity=0.200 Sum_probs=65.0
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcccccc
Q 002280 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~ 539 (943)
...++|||+|||..+|+++|+++|++||.+..+ ..+.+..++.++|||||+|.+.++|..|+. |||..|.|+.
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v------~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 77 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDA------RVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQ 77 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEE------EEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEE------EEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 346799999999999999999999999853321 122233456789999999999999999999 9999999999
Q ss_pred ccccCCc
Q 002280 540 LKIKRPK 546 (943)
Q Consensus 540 LkV~rp~ 546 (943)
|+|....
T Consensus 78 l~v~~a~ 84 (87)
T 3bs9_A 78 IRTNWAT 84 (87)
T ss_dssp CEEEEEC
T ss_pred EEEEecC
Confidence 9987543
No 208
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=1.1e-12 Score=116.31 Aligned_cols=74 Identities=12% Similarity=0.288 Sum_probs=68.6
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEc
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQA 625 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A 625 (943)
+|||+|||..+++++|+++|++||.|..+.|+.+ ++.++|||||+|.+.++|.+|+..|||..|.|+.|++.++
T Consensus 7 ~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 7 GLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp EEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 8999999999999999999999999999999887 4567999999999999999999999999999998877543
No 209
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.29 E-value=2e-12 Score=116.84 Aligned_cols=80 Identities=19% Similarity=0.304 Sum_probs=66.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcccccc
Q 002280 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~ 539 (943)
...++|||+|||+.+|+++|+++|.+||.+..+ ..+.+..++.++|||||+|.+.++|.+||. |||..|.|++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~------~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 86 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGS------VCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRK 86 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTC------CEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccce------EEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcE
Confidence 345899999999999999999999998863321 234455567889999999999999999999 9999999999
Q ss_pred ccccCCc
Q 002280 540 LKIKRPK 546 (943)
Q Consensus 540 LkV~rp~ 546 (943)
|+|..++
T Consensus 87 l~v~~a~ 93 (95)
T 2ek1_A 87 VKLSGPS 93 (95)
T ss_dssp CEEECCC
T ss_pred EEEEecc
Confidence 9998654
No 210
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.29 E-value=8.3e-12 Score=114.92 Aligned_cols=73 Identities=21% Similarity=0.348 Sum_probs=68.7
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCCC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGS 630 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~~ 630 (943)
+|||+|||..+++++|+++|++||.|..|.|+ +|||||+|.+.++|.+|+..|||..|.|+.|.|.++.+...
T Consensus 13 ~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~------~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 85 (103)
T 2dgu_A 13 VLFVRNLANTVTEEILEKAFSQFGKLERVKKL------KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQ 85 (103)
T ss_dssp CEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC------SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE------CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCcc
Confidence 89999999999999999999999999999885 56999999999999999999999999999999999977554
No 211
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.28 E-value=6e-12 Score=114.84 Aligned_cols=80 Identities=20% Similarity=0.346 Sum_probs=66.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHHccCCccccccc
Q 002280 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSIL 540 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~LnG~~l~Gr~L 540 (943)
...++|||+|||+.+|+++|+++|.+||.+..+ ..+.+..++.++|||||+|.+.++|..||.||+..|.|+.|
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v------~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l 81 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEV------VMIYDAEKQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKV 81 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEE------EECCCTTTCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEE------EEEeCCCCCCCCceEEEEECCHHHHHHHHHhCCCEECCeEE
Confidence 457899999999999999999999998853221 12223345778999999999999999999999999999999
Q ss_pred cccCCc
Q 002280 541 KIKRPK 546 (943)
Q Consensus 541 kV~rp~ 546 (943)
.|....
T Consensus 82 ~V~~a~ 87 (99)
T 2dgs_A 82 EVKRAE 87 (99)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 998543
No 212
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.28 E-value=5.9e-12 Score=121.91 Aligned_cols=74 Identities=18% Similarity=0.382 Sum_probs=69.5
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEc
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQA 625 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A 625 (943)
+|||+|||..+++++|+++|++||.|..+.|+.+ ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.+|
T Consensus 65 ~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 65 VLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp EEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred EEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 9999999999999999999999999999999887 4567999999999999999999999999999999999865
No 213
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.28 E-value=2.3e-12 Score=118.54 Aligned_cols=80 Identities=25% Similarity=0.309 Sum_probs=67.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcccccc
Q 002280 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~ 539 (943)
...++|||+|||+.+|+++|+++|++||.+..+ ..+.+..++.++|||||+|.+.++|..||. |||..|.|+.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v------~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 84 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDV------YIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRE 84 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEE------ECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEE------EEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 457899999999999999999999999853322 122334457889999999999999999999 9999999999
Q ss_pred ccccCCc
Q 002280 540 LKIKRPK 546 (943)
Q Consensus 540 LkV~rp~ 546 (943)
|.|....
T Consensus 85 l~V~~a~ 91 (103)
T 2dnm_A 85 LRVQVAR 91 (103)
T ss_dssp CEEEECS
T ss_pred EEEEECC
Confidence 9998654
No 214
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=3.1e-12 Score=117.33 Aligned_cols=81 Identities=23% Similarity=0.347 Sum_probs=67.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccccc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr 538 (943)
....++|||+|||+.+|+++|+++|.+||.+..+. .+.+..++.++|||||+|.+.++|..||. |||..|.|+
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~------i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 82 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVV------VVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGR 82 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEE------ECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEE------EEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 35678999999999999999999999998643321 22333456789999999999999999997 999999999
Q ss_pred cccccCCc
Q 002280 539 ILKIKRPK 546 (943)
Q Consensus 539 ~LkV~rp~ 546 (943)
+|+|....
T Consensus 83 ~l~v~~a~ 90 (102)
T 1x5s_A 83 QIRVDQAG 90 (102)
T ss_dssp CCEEEEEE
T ss_pred EEEEEECC
Confidence 99998543
No 215
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.28 E-value=2.1e-12 Score=111.48 Aligned_cols=73 Identities=19% Similarity=0.324 Sum_probs=67.2
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecC--CCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEc
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE--DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQA 625 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~--~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A 625 (943)
+|||+|||..+++++|+++|++||.|..+.++.+. +.++|||||+|.+.++|.+|+. ++|..|.|+.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 58999999999999999999999999999988773 5679999999999999999998 5899999999998864
No 216
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.28 E-value=3.1e-12 Score=116.67 Aligned_cols=80 Identities=30% Similarity=0.410 Sum_probs=66.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcccccc
Q 002280 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~ 539 (943)
...++|||+|||+.+|+++|+++|..||.+..+ ..+.+..++.++|||||+|.+.++|..||. |||..|.|++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v------~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 79 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSEL------HYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRM 79 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEE------ECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEE------EEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 457899999999999999999999999853322 122333357789999999999999999997 9999999999
Q ss_pred ccccCCc
Q 002280 540 LKIKRPK 546 (943)
Q Consensus 540 LkV~rp~ 546 (943)
|.|....
T Consensus 80 l~V~~a~ 86 (99)
T 1whw_A 80 LHVLPST 86 (99)
T ss_dssp EEEEECC
T ss_pred EEEEEcC
Confidence 9998544
No 217
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.28 E-value=2.2e-12 Score=116.63 Aligned_cols=80 Identities=24% Similarity=0.287 Sum_probs=65.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccccc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr 538 (943)
....++|||+|||+.+|+++|+++|++||.+..+. .+.+. .+.++|||||+|.+.++|..|+. |||..|.|+
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~------i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 85 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVT------ICKDR-EGKPKSFGFVCFKHPESVSYAIALLNGIRLYGR 85 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEE------EEECT-TSCEEEEEEEEESSTHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEE------EEECC-CCCCceEEEEEECCHHHHHHHHHHhCCCEECCC
Confidence 34568999999999999999999999998533211 11111 26678999999999999999999 999999999
Q ss_pred cccccCCc
Q 002280 539 ILKIKRPK 546 (943)
Q Consensus 539 ~LkV~rp~ 546 (943)
+|+|..++
T Consensus 86 ~l~V~~a~ 93 (95)
T 2ywk_A 86 PINVSGPS 93 (95)
T ss_dssp ECEEECCC
T ss_pred EEEEEEcC
Confidence 99998654
No 218
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.28 E-value=3.5e-12 Score=115.73 Aligned_cols=77 Identities=14% Similarity=0.232 Sum_probs=70.7
Q ss_pred EEEEecCCCCCCHHHHH----HHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEccc
Q 002280 552 AIFIGGISRTLSSKMVM----EIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 627 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~----e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~ 627 (943)
+|||+|||..+++++|+ ++|++||.|..|.+.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.+
T Consensus 10 ~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~-~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 88 (97)
T 1nu4_A 10 TIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR-SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKT 88 (97)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH-HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSS
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc-CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEccC
Confidence 89999999999999999 9999999999998864 345689999999999999999999999999999999999876
Q ss_pred CC
Q 002280 628 DG 629 (943)
Q Consensus 628 ~~ 629 (943)
..
T Consensus 89 ~~ 90 (97)
T 1nu4_A 89 DS 90 (97)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 219
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.28 E-value=3.4e-12 Score=117.65 Aligned_cols=80 Identities=26% Similarity=0.274 Sum_probs=65.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcccc-
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSG- 537 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~G- 537 (943)
....++|||+|||+.+|+++|+++|+.||.+..+. .+.+ .++.++|||||+|.+.++|..||. |||..|.|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~------i~~~-~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg 84 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECT------VLRG-PDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPG 84 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEE------EEEC-SSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE------EEEC-CCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCC
Confidence 34578999999999999999999999998533321 1122 246779999999999999999999 99999988
Q ss_pred --ccccccCCc
Q 002280 538 --SILKIKRPK 546 (943)
Q Consensus 538 --r~LkV~rp~ 546 (943)
++|.|....
T Consensus 85 ~~~~l~V~~a~ 95 (105)
T 2dnh_A 85 ASSSLVVKFAD 95 (105)
T ss_dssp CSSCCEEEESC
T ss_pred CCccEEEEECc
Confidence 999998544
No 220
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=8.7e-12 Score=116.00 Aligned_cols=76 Identities=21% Similarity=0.311 Sum_probs=67.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccccc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr 538 (943)
....++|||+|||..+|+++|+++|..|| .|..+.+...+|||||+|.+.++|..|+. |||..|.|+
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G------------~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 89 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFG------------QIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGH 89 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHS------------CEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC------------CeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCc
Confidence 45678999999999999999999999998 45566666669999999999999999998 999999999
Q ss_pred cccccCCcc
Q 002280 539 ILKIKRPKE 547 (943)
Q Consensus 539 ~LkV~rp~d 547 (943)
.|+|.+...
T Consensus 90 ~l~v~~a~~ 98 (109)
T 1x4g_A 90 VVKCYWGKE 98 (109)
T ss_dssp ECEEECCCC
T ss_pred EEEEEecCC
Confidence 999986543
No 221
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=3.5e-12 Score=119.87 Aligned_cols=77 Identities=14% Similarity=0.126 Sum_probs=70.9
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCe-eEEEEEec-CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPL-KAYHFEVN-EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDG 629 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I-~~v~l~~d-~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~ 629 (943)
+|||+|||+.+++++|+++|+.||.| ..|.|+.+ ++.++|||||+|.+.++|.+||.. ||..|.|+.|.|.+|.+..
T Consensus 17 ~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a~~~~ 95 (114)
T 2cpy_A 17 CAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVVTLED 95 (114)
T ss_dssp EEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEECHHH
T ss_pred EEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEECCHHH
Confidence 99999999999999999999999999 88998877 456799999999999999999986 9999999999999986543
No 222
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.27 E-value=2.4e-12 Score=120.95 Aligned_cols=75 Identities=29% Similarity=0.393 Sum_probs=65.2
Q ss_pred CCCCCeEEEcCCCCC-CCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccC--Ccc
Q 002280 460 NRPMRRLCVENLPLS-ASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDG--CSF 535 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~-vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG--~~l 535 (943)
..+.++|||+|||+. +|+++|+++|.+|| .|.++.+..++|||||+|.+.++|..|+. |++ ..|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG------------~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l 89 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYG------------KIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWF 89 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTS------------CCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCS
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcC------------CEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceE
Confidence 456789999999998 99999999999998 44566667889999999999999999998 764 679
Q ss_pred ccccccccCCc
Q 002280 536 SGSILKIKRPK 546 (943)
Q Consensus 536 ~Gr~LkV~rp~ 546 (943)
.|++|.|....
T Consensus 90 ~Gr~l~V~~a~ 100 (112)
T 1x4f_A 90 QGRCVKVDLSE 100 (112)
T ss_dssp SSSCCEEEEEC
T ss_pred CCEEEEEEECc
Confidence 99999998654
No 223
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.27 E-value=9.2e-12 Score=111.63 Aligned_cols=72 Identities=22% Similarity=0.361 Sum_probs=63.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcccccc
Q 002280 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~ 539 (943)
...++|||+|||+.+|+++|+++|++||. |..+.+. +|||||+|.+.++|..|+. |||..|.|+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~------------i~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 71 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGK------------VLECDII--KNYGFVHIEDKTAAEDAIRNLHHYKLHGVN 71 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSC------------EEEEEEE--TTEEEEEESSHHHHHHHHHHHTTCBCSSCB
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCC------------EEEEEEE--CCEEEEEECCHHHHHHHHHHhcCCccCCcE
Confidence 45789999999999999999999999884 3444443 8999999999999999998 9999999999
Q ss_pred ccccCCc
Q 002280 540 LKIKRPK 546 (943)
Q Consensus 540 LkV~rp~ 546 (943)
|+|.+..
T Consensus 72 l~v~~a~ 78 (90)
T 2dnq_A 72 INVEASK 78 (90)
T ss_dssp CEEECSS
T ss_pred EEEEECC
Confidence 9998654
No 224
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.27 E-value=4.5e-12 Score=113.88 Aligned_cols=78 Identities=22% Similarity=0.209 Sum_probs=65.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcccccc
Q 002280 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~ 539 (943)
...++|||+|||+.+|+++|+++|.+||.+..+ .+. ..++.++|||||+|.+.++|..|+. |||..|.|+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~-------~i~-~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~ 77 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYA-------DIK-MENGKSKGCGVVKFESPEVAERACRMMNGMKLSGRE 77 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEE-------EEE-ESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEE-------EEE-ccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 457899999999999999999999999853321 111 1356789999999999999999999 9999999999
Q ss_pred ccccCCc
Q 002280 540 LKIKRPK 546 (943)
Q Consensus 540 LkV~rp~ 546 (943)
|+|....
T Consensus 78 l~v~~a~ 84 (92)
T 2dgv_A 78 IDVRIDR 84 (92)
T ss_dssp CCCEECS
T ss_pred EEEEEcC
Confidence 9998654
No 225
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.27 E-value=2.4e-12 Score=121.99 Aligned_cols=81 Identities=25% Similarity=0.291 Sum_probs=65.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHHccCCcccccc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSI 539 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~LnG~~l~Gr~ 539 (943)
....++|||+|||+.+|+++|+++|+.||...++..+ ..+.+.. +.++|||||+|.+.++|.+||.|||..|.|+.
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v---~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~ 89 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGV---HFIYTRE-GRQSGEAFVELESEDDVKLALKKDRESMGHRY 89 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGE---EEEECSS-SCEEEEEEEEBSSHHHHHHHGGGTTEEETTEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeE---EEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCeECCeE
Confidence 3457899999999999999999999998852212222 1233333 78899999999999999999999999999999
Q ss_pred ccccC
Q 002280 540 LKIKR 544 (943)
Q Consensus 540 LkV~r 544 (943)
|.|..
T Consensus 90 i~V~~ 94 (118)
T 2db1_A 90 IEVFK 94 (118)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 98863
No 226
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.27 E-value=2.1e-12 Score=113.67 Aligned_cols=77 Identities=21% Similarity=0.287 Sum_probs=64.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccccccccc
Q 002280 464 RRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSILKI 542 (943)
Q Consensus 464 rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~LkV 542 (943)
.+|||+|||+.+|+++|+++|.+||.+..+ ..+.+..++.++|||||+|.+.++|..|+. |||..|.|++|+|
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~------~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 75 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSG------HVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRI 75 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEE------EEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEE------EEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 589999999999999999999998853322 122333457779999999999999999999 9999999999999
Q ss_pred cCCc
Q 002280 543 KRPK 546 (943)
Q Consensus 543 ~rp~ 546 (943)
....
T Consensus 76 ~~a~ 79 (83)
T 3md1_A 76 NWAA 79 (83)
T ss_dssp EECC
T ss_pred EecC
Confidence 8654
No 227
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.27 E-value=9.1e-12 Score=116.53 Aligned_cols=74 Identities=11% Similarity=0.133 Sum_probs=68.6
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecC-CCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEccc
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE-DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 627 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~-~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~ 627 (943)
+|||+|||+.+++++|+++|+.| .|..|.|+.+. +.++|||||+|.+.++|.+|| .|||..|+|+.|.|..+.+
T Consensus 18 ~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 18 YVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp EEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred EEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 89999999999999999999999 88999998873 567999999999999999999 6999999999999988754
No 228
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.27 E-value=5e-12 Score=116.76 Aligned_cols=81 Identities=17% Similarity=0.181 Sum_probs=67.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcc---
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSF--- 535 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l--- 535 (943)
....++|||+|||+.+|+++|+++|.+||.+..+ ..+.+..++.++|||||+|.+.++|..|+. |||..+
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v------~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~ 83 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYEL------TVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPG 83 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEE------ECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEE------EEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCC
Confidence 4567899999999999999999999999864332 133444567889999999999999999999 999887
Q ss_pred ccccccccCCc
Q 002280 536 SGSILKIKRPK 546 (943)
Q Consensus 536 ~Gr~LkV~rp~ 546 (943)
.|++|.|.+..
T Consensus 84 ~g~~l~v~~a~ 94 (106)
T 2dgp_A 84 MNRPIQVKPAD 94 (106)
T ss_dssp CSSCCEEEECC
T ss_pred CCceEEEEECC
Confidence 88999998644
No 229
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.27 E-value=4.2e-12 Score=119.93 Aligned_cols=79 Identities=24% Similarity=0.287 Sum_probs=65.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcccccc
Q 002280 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~ 539 (943)
...++|||+|||+.+|+++|+++|++||.+..+. .+.+. ++.++|||||+|.+.++|..|+. |||..|.|+.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~------i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~ 77 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVL------LIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKA 77 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEE------EECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEE------EEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 4568999999999999999999999998643321 11222 67789999999999999999999 9999999999
Q ss_pred ccccCCc
Q 002280 540 LKIKRPK 546 (943)
Q Consensus 540 LkV~rp~ 546 (943)
|+|...+
T Consensus 78 l~V~~a~ 84 (116)
T 2fy1_A 78 IKVEQAK 84 (116)
T ss_dssp CEEEECC
T ss_pred EEEEECC
Confidence 9998543
No 230
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.27 E-value=4.3e-12 Score=115.04 Aligned_cols=76 Identities=12% Similarity=0.208 Sum_probs=69.3
Q ss_pred EEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCC
Q 002280 551 VAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDG 629 (943)
Q Consensus 551 ~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~ 629 (943)
.+|||+|||..+++++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.+..
T Consensus 17 ~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 92 (96)
T 1fjc_A 17 RTLLAKNLSFNITEDELKEVFEDALEIRLV---SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKG 92 (96)
T ss_dssp GEEEEESCCSSCCHHHHHHHHCSEEEECCE---EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHhhCCcEEEe---CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 399999999999999999999999988766 4456779999999999999999999999999999999999986644
No 231
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.27 E-value=5.3e-12 Score=117.43 Aligned_cols=81 Identities=27% Similarity=0.332 Sum_probs=67.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-cc------C
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CD------G 532 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-Ln------G 532 (943)
..+.++|||+|||+.+|+++|+++|..||.+..+ ..+.+..++.++|||||+|.+.++|..||. || |
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v------~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~ 85 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYV------RVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGG 85 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEE------ECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE------EEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCC
Confidence 3567899999999999999999999999853322 133344567889999999999999999999 99 9
Q ss_pred CccccccccccCCc
Q 002280 533 CSFSGSILKIKRPK 546 (943)
Q Consensus 533 ~~l~Gr~LkV~rp~ 546 (943)
..|.|+.|.|.+..
T Consensus 86 ~~~~g~~l~v~~a~ 99 (111)
T 1x4h_A 86 LKLDGRQLKVDLAV 99 (111)
T ss_dssp EESSSCEEEEECCC
T ss_pred cEEcCEEEEEEECC
Confidence 99999999998654
No 232
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=7.2e-12 Score=115.77 Aligned_cols=77 Identities=12% Similarity=0.233 Sum_probs=70.2
Q ss_pred EEEEEecCCCCCCHHHHHHHHhhcCCeeE-EEEEec-CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccC
Q 002280 551 VAIFIGGISRTLSSKMVMEIVCAFGPLKA-YHFEVN-EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLD 628 (943)
Q Consensus 551 ~~LfV~NLp~~~teedL~e~Fs~fG~I~~-v~l~~d-~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~ 628 (943)
.+|||+|||+.+++++|+++|+.||.|.. |.|+.+ ++.++|||||+|.+.++|.+||.. ||..|+|+.|.|.++.+.
T Consensus 16 ~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~~~~ 94 (104)
T 1wg5_A 16 GFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKSSRA 94 (104)
T ss_dssp CEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEECTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEECCHH
Confidence 39999999999999999999999999987 877776 566799999999999999999997 999999999999988653
No 233
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.27 E-value=9.2e-12 Score=119.71 Aligned_cols=77 Identities=19% Similarity=0.268 Sum_probs=63.8
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcc
Q 002280 461 RPMRRLCVENLPLSASEKALM----EFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSF 535 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~----elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l 535 (943)
.+.++|||+|||+.+++++|+ ++|++||.+..+ .-..++.++|||||+|.+.++|..|+. |||..|
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v---------~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l 97 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDI---------VVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPF 97 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEE---------EECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEE---------EeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEe
Confidence 456899999999999999876 689999853221 112347889999999999999999998 999999
Q ss_pred ccccccccCCc
Q 002280 536 SGSILKIKRPK 546 (943)
Q Consensus 536 ~Gr~LkV~rp~ 546 (943)
.|++|+|.+..
T Consensus 98 ~gr~l~V~~a~ 108 (127)
T 2a3j_A 98 QGNPLVITFSE 108 (127)
T ss_dssp TTSCCEEEECC
T ss_pred CCCEEEEEEcc
Confidence 99999998654
No 234
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.27 E-value=2e-11 Score=111.39 Aligned_cols=72 Identities=15% Similarity=0.242 Sum_probs=67.5
Q ss_pred EEEEecCCCCCCHHHHHHHHhhc--CCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAF--GPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDG 629 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~f--G~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~ 629 (943)
+|||+|||..+++++|+++|++| |.|..|.+ .+|||||+|.+.++|.+|+..|||..|.|+.|.|.+|.+..
T Consensus 17 ~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpd_A 17 ILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK------IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVD 90 (99)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE------CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE------eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCC
Confidence 99999999999999999999999 89988876 37899999999999999999999999999999999987654
No 235
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.27 E-value=9.4e-12 Score=113.65 Aligned_cols=73 Identities=19% Similarity=0.260 Sum_probs=63.7
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcccc
Q 002280 460 NRPMRRLCVENLPL-SASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSG 537 (943)
Q Consensus 460 ~~~~rtLfVgNLP~-~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~G 537 (943)
.+..++|||+|||+ .+|+++|+++|+.||. |..+.+ .+|||||+|.+.++|..|+. |||..|.|
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~------------v~~v~i--~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGH------------IMQINI--KNAFGFIQFDNPQSVRDAIEXESQEMNFG 84 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSC------------EEEEEE--CSSEEEEEESSHHHHHHHHHHHTTSEETT
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCC------------EEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 45678999999998 9999999999999884 444444 48999999999999999999 99999999
Q ss_pred ccccccCCc
Q 002280 538 SILKIKRPK 546 (943)
Q Consensus 538 r~LkV~rp~ 546 (943)
+.|+|...+
T Consensus 85 ~~l~V~~a~ 93 (97)
T 2xnq_A 85 KKLILEVSS 93 (97)
T ss_dssp EECEEEECC
T ss_pred EEEEEEecC
Confidence 999987544
No 236
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.27 E-value=8.6e-12 Score=110.82 Aligned_cols=78 Identities=19% Similarity=0.289 Sum_probs=63.9
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeec-CCCeeeEEeCCHHHHHHHHH-ccCCcccccc
Q 002280 462 PMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQR-EKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (943)
Q Consensus 462 ~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~-skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~ 539 (943)
..++|||+|||+.+|+++|+++|.+||.+..+ . .+.+..++. ++|||||+|.+.++|..|+. |||..|.|+.
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~---~---i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 76 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMI---D---MPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQE 76 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEE---E---CCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEE---E---EEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeE
Confidence 46799999999999999999999999853221 1 222333333 89999999999999999999 9999999999
Q ss_pred ccccCC
Q 002280 540 LKIKRP 545 (943)
Q Consensus 540 LkV~rp 545 (943)
|.|...
T Consensus 77 l~v~~a 82 (88)
T 4a8x_A 77 ITATAV 82 (88)
T ss_dssp CEEEEE
T ss_pred EEEEEC
Confidence 998743
No 237
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.27 E-value=3.3e-12 Score=110.27 Aligned_cols=74 Identities=16% Similarity=0.196 Sum_probs=63.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHHccCCccccccccccC
Q 002280 465 RLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSILKIKR 544 (943)
Q Consensus 465 tLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~LnG~~l~Gr~LkV~r 544 (943)
+|||+|||+.+|+++|+++|++||.+..+ ..+.+..++.++|||||+|.+.++|..|+.+++..|.|+.|.|.+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v------~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~v~~ 74 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESI------ELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHNVGLSKCEIKV 74 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEE------CCCCSCCCSSSCCCEEEECSSSHHHHHHHTTSSCCBTTBCCCEEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEE------EEEecCCCCCcCCEEEEEECCHHHHHHHHHhCCCeECCEEEEEEE
Confidence 69999999999999999999999864332 133444568889999999999999999999999999999998864
No 238
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.26 E-value=1e-11 Score=114.73 Aligned_cols=81 Identities=21% Similarity=0.337 Sum_probs=67.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceee-eeeecCCCeeeEEeCCHHHHHHHHH-c-cCCccc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIG-CVIQREKGQAFVEFLTAEDASAALC-C-DGCSFS 536 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~-~~~~~skGyAFVeF~s~edA~~Al~-L-nG~~l~ 536 (943)
....++|||+|||+.+|+++|+++|..||.+..+ . .+.+ ..++.++|||||+|.+.++|..||. | ||..|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v---~---i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~ 85 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTV---R---LPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLY 85 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEE---E---CCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSS
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEE---E---EecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeEC
Confidence 4567899999999999999999999999853332 1 2223 3467789999999999999999999 9 999999
Q ss_pred cccccccCCc
Q 002280 537 GSILKIKRPK 546 (943)
Q Consensus 537 Gr~LkV~rp~ 546 (943)
|+.|.|.+..
T Consensus 86 g~~l~v~~a~ 95 (107)
T 2cph_A 86 GRRLVLEWAD 95 (107)
T ss_dssp SCBCEEEECC
T ss_pred CCEEEEEeCC
Confidence 9999998654
No 239
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.26 E-value=4.1e-12 Score=120.33 Aligned_cols=77 Identities=13% Similarity=0.150 Sum_probs=70.7
Q ss_pred EEEEEecCCCCCCHHHHHHHHhhcCC---eeEEEEEecC-CCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcc
Q 002280 551 VAIFIGGISRTLSSKMVMEIVCAFGP---LKAYHFEVNE-DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAV 626 (943)
Q Consensus 551 ~~LfV~NLp~~~teedL~e~Fs~fG~---I~~v~l~~d~-~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~ 626 (943)
.+|||+|||+.+++++|+++|+.||. |..|.|+.+. +.++|||||+|.+.++|.+||. |||..|+|+.|.|.++.
T Consensus 18 ~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~ 96 (118)
T 2db1_A 18 YVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVFKSH 96 (118)
T ss_dssp CEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEECC
Confidence 38999999999999999999999999 8899998874 5569999999999999999999 99999999999999885
Q ss_pred cC
Q 002280 627 LD 628 (943)
Q Consensus 627 ~~ 628 (943)
+.
T Consensus 97 ~~ 98 (118)
T 2db1_A 97 RT 98 (118)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 240
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.26 E-value=2.8e-12 Score=118.72 Aligned_cols=80 Identities=16% Similarity=0.233 Sum_probs=67.3
Q ss_pred CCCCeEEEcCCCCCC------CHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCC
Q 002280 461 RPMRRLCVENLPLSA------SEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGC 533 (943)
Q Consensus 461 ~~~rtLfVgNLP~~v------TEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~ 533 (943)
...++|||+|||+.+ |+++|+++|++||.+..+ .+. ..+|.++|||||+|.+.++|..|+. |||.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v-------~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~ 84 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITND-------FYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGY 84 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEE-------ECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEE-------Eee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCc
Confidence 446899999999999 889999999999864332 111 2467889999999999999999999 9999
Q ss_pred ccccc-cccccCCccc
Q 002280 534 SFSGS-ILKIKRPKEF 548 (943)
Q Consensus 534 ~l~Gr-~LkV~rp~d~ 548 (943)
.|.|+ +|+|..+.+.
T Consensus 85 ~~~g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 85 KLDKQHTFRVNLFTDF 100 (105)
T ss_dssp ECSTTCEEEEECSCCC
T ss_pred ccCCCceEEEEEcchH
Confidence 99998 9999877653
No 241
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=9.2e-12 Score=116.70 Aligned_cols=77 Identities=16% Similarity=0.289 Sum_probs=69.6
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCee----EEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEccc
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLK----AYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 627 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~----~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~ 627 (943)
+|||+|||..+++++|+++|++||.|. .+.+. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.+|.+
T Consensus 27 ~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~--~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 104 (115)
T 2cpx_A 27 VLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM--TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKN 104 (115)
T ss_dssp EEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE--CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC--CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEccC
Confidence 999999999999999999999999984 44443 667899999999999999999999999999999999999976
Q ss_pred CCC
Q 002280 628 DGS 630 (943)
Q Consensus 628 ~~~ 630 (943)
...
T Consensus 105 ~~~ 107 (115)
T 2cpx_A 105 KKQ 107 (115)
T ss_dssp CSC
T ss_pred CCC
Confidence 544
No 242
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.26 E-value=2.8e-12 Score=114.36 Aligned_cols=79 Identities=22% Similarity=0.270 Sum_probs=66.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHHccCCccccccccc
Q 002280 463 MRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSILKI 542 (943)
Q Consensus 463 ~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~LnG~~l~Gr~LkV 542 (943)
.++|||+|||+.+|+++|+++|++||.+..+ ..+.+..++.++|||||+|.+.++|..|+.|||..|.|+.|+|
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v------~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~g~~~~g~~l~V 79 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRV------TILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKV 79 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEE------EEEESCSSSSCCEEEEEEESSTHHHHHHGGGTTCEETTEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEE------EEEecCCCCCcceEEEEEECCHHHHHHHHhcCCCEECCcEEEE
Confidence 4799999999999999999999999853322 1223334678899999999999999999999999999999999
Q ss_pred cCCcc
Q 002280 543 KRPKE 547 (943)
Q Consensus 543 ~rp~d 547 (943)
.+...
T Consensus 80 ~~a~~ 84 (89)
T 3ucg_A 80 IPKRT 84 (89)
T ss_dssp EETTT
T ss_pred EEccC
Confidence 86543
No 243
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.26 E-value=5.7e-12 Score=118.05 Aligned_cols=73 Identities=19% Similarity=0.178 Sum_probs=65.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccccccc
Q 002280 462 PMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSIL 540 (943)
Q Consensus 462 ~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~L 540 (943)
..++|||+|||+.+|+++|+++|.+|| .|..+.+..++|||||+|.+.++|..|+. |||..|.|++|
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G------------~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 76 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFG------------SLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPL 76 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTS------------CEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC------------CEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEE
Confidence 457999999999999999999999988 45566666789999999999999999999 99999999999
Q ss_pred cccCCc
Q 002280 541 KIKRPK 546 (943)
Q Consensus 541 kV~rp~ 546 (943)
.|.+..
T Consensus 77 ~V~~a~ 82 (111)
T 1whx_A 77 YLEWAP 82 (111)
T ss_dssp EEEEEE
T ss_pred EEEECC
Confidence 997544
No 244
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.26 E-value=7.4e-12 Score=114.66 Aligned_cols=76 Identities=14% Similarity=0.197 Sum_probs=68.4
Q ss_pred EEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec-CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCC
Q 002280 551 VAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN-EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDG 629 (943)
Q Consensus 551 ~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d-~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~ 629 (943)
.+|||+|||..+++++|+++|++||.| .++.+ ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.+..
T Consensus 16 ~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 92 (101)
T 2fc9_A 16 KTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRG 92 (101)
T ss_dssp SEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCCC
Confidence 399999999999999999999999987 44444 56679999999999999999999999999999999999997654
No 245
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.26 E-value=4e-12 Score=122.47 Aligned_cols=82 Identities=17% Similarity=0.239 Sum_probs=68.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCC----c
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGC----S 534 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~----~ 534 (943)
....++|||+|||+.+|+++|+++|.+||.+... .+ ..+.+..++.++|||||+|.+. +|..|+. |||. .
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~-~v---~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~ 94 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSS-NV---RVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLT 94 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTT-TE---ECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccee-eE---EEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCcc
Confidence 3456899999999999999999999999864220 01 2445666899999999999999 9999999 9999 9
Q ss_pred cccccccccCCc
Q 002280 535 FSGSILKIKRPK 546 (943)
Q Consensus 535 l~Gr~LkV~rp~ 546 (943)
|.|+.|.|....
T Consensus 95 ~~gr~l~V~~a~ 106 (131)
T 2m2b_A 95 IDGKTINVEFAK 106 (131)
T ss_dssp GGGCCCCCEECC
T ss_pred CCCEEEEEEECC
Confidence 999999998543
No 246
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.26 E-value=5.9e-12 Score=133.18 Aligned_cols=76 Identities=17% Similarity=0.205 Sum_probs=72.2
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcC--CeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEccc
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFG--PLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 627 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG--~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~ 627 (943)
+|||+|||+.+++++|+++|++|| .|..|.|+.+ ++.++|||||+|.+.++|.+||..|||..|.|+.|.|.+|.+
T Consensus 70 ~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~~ 149 (229)
T 3q2s_C 70 ALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVNK 149 (229)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECCH
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECCC
Confidence 899999999999999999999999 9999999988 456799999999999999999999999999999999999865
No 247
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=4.8e-12 Score=116.84 Aligned_cols=75 Identities=11% Similarity=0.196 Sum_probs=68.1
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec-CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN-EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLD 628 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d-~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~ 628 (943)
+|||+|||+.+++++|+++|+.||.+ .|.|+.+ ++.++|||||+|.+.++|.+||. +|+..|.|+.|.|..+.+.
T Consensus 17 ~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~~~ 92 (102)
T 1wez_A 17 CVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNSTA 92 (102)
T ss_dssp EEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEECCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECCCC
Confidence 99999999999999999999999955 8988887 45679999999999999999994 8999999999999987553
No 248
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.26 E-value=8.5e-12 Score=113.42 Aligned_cols=73 Identities=16% Similarity=0.259 Sum_probs=68.4
Q ss_pred EEEEEecCCC-CCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCC
Q 002280 551 VAIFIGGISR-TLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDG 629 (943)
Q Consensus 551 ~~LfV~NLp~-~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~ 629 (943)
.+|||+|||. .+++++|+++|++||.|..|.|. +|||||+|.+.++|.+|+..|||..|.|+.|.|.++.+..
T Consensus 11 ~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 84 (96)
T 2kvi_A 11 SRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNA 84 (96)
T ss_dssp EEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCC
T ss_pred CEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCC
Confidence 3999999998 99999999999999999999883 7899999999999999999999999999999999987644
No 249
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.26 E-value=3.6e-12 Score=119.60 Aligned_cols=81 Identities=17% Similarity=0.190 Sum_probs=66.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccccc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr 538 (943)
....++|||+|||+.+|+++|+++|..||.+..+ ..+.+..++.++|||||+|.+.++|..||. |||..|.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v------~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 85 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDA------RVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGR 85 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEE------EEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEE------EEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 4567899999999999999999999999853321 122223456778999999999999999998 999999999
Q ss_pred cccccCCc
Q 002280 539 ILKIKRPK 546 (943)
Q Consensus 539 ~LkV~rp~ 546 (943)
.|+|.+..
T Consensus 86 ~l~V~~a~ 93 (115)
T 2dgo_A 86 QIRTNWAT 93 (115)
T ss_dssp ECEEEESS
T ss_pred EEEEEEcc
Confidence 99998544
No 250
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=5.4e-12 Score=113.79 Aligned_cols=74 Identities=23% Similarity=0.368 Sum_probs=62.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccC-Cccccc
Q 002280 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDG-CSFSGS 538 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG-~~l~Gr 538 (943)
...++|||+|||+.+|+++|+++|.+||.++. .+.+ .++|||||+|.+.++|..|+. ||| ..|.|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~-----------~~~~-~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~ 73 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLA-----------GQVL-LKSGYAFVDYPDQNWAIRAIETLSGKVELHGK 73 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCS-----------SCEE-EETTEEEECCSCHHHHHHHHHHHTTTCEETTE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceE-----------EEEE-cCCCEEEEEECCHHHHHHHHHHccCCeeECCE
Confidence 45689999999999999999999999985211 1111 368999999999999999999 999 999999
Q ss_pred cccccCCc
Q 002280 539 ILKIKRPK 546 (943)
Q Consensus 539 ~LkV~rp~ 546 (943)
.|+|.+..
T Consensus 74 ~l~v~~a~ 81 (93)
T 2cqh_A 74 IMEVDYSV 81 (93)
T ss_dssp ECEEEECC
T ss_pred EEEEEEcc
Confidence 99998543
No 251
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.26 E-value=1.1e-11 Score=113.86 Aligned_cols=75 Identities=24% Similarity=0.382 Sum_probs=64.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeee----ecCCCeeeEEeCCHHHHHHHHH-ccCCc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVI----QREKGQAFVEFLTAEDASAALC-CDGCS 534 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~----~~skGyAFVeF~s~edA~~Al~-LnG~~ 534 (943)
....++|||+|||+.+|+++|+++|..||.+ ..+.+ +.++|||||+|.+.++|..||. |||..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v------------~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 79 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKI------------LDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTV 79 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCE------------EEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCe------------EEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4567899999999999999999999998853 22222 2368999999999999999999 99999
Q ss_pred cccccccccCCc
Q 002280 535 FSGSILKIKRPK 546 (943)
Q Consensus 535 l~Gr~LkV~rp~ 546 (943)
|.|+.|.|....
T Consensus 80 ~~g~~l~v~~a~ 91 (103)
T 2cq3_A 80 VEGRKIEVNNAT 91 (103)
T ss_dssp ETTEECEEEECC
T ss_pred ECCEEEEEEEcc
Confidence 999999998544
No 252
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.26 E-value=8.2e-12 Score=116.44 Aligned_cols=73 Identities=34% Similarity=0.406 Sum_probs=63.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccccc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr 538 (943)
....++|||+|||+.+|+++|+++|++||. |..+.+. +|||||+|.+.++|..|+. |||..|.|+
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~------------i~~v~i~--kg~afV~f~~~~~A~~Ai~~l~g~~~~g~ 93 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGP------------MKEVKIL--NGFAFVEFEEAESAAKAIEEVHGKSFANQ 93 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSC------------CCEEEEE--TTEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCC------------EEEEEEE--CCEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 456789999999999999999999999884 2333333 8999999999999999999 999999999
Q ss_pred cccccCCc
Q 002280 539 ILKIKRPK 546 (943)
Q Consensus 539 ~LkV~rp~ 546 (943)
.|.|....
T Consensus 94 ~l~V~~a~ 101 (108)
T 2jvo_A 94 PLEVVYSK 101 (108)
T ss_dssp ECEEESCS
T ss_pred EEEEEEec
Confidence 99998654
No 253
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.26 E-value=5.7e-12 Score=118.39 Aligned_cols=75 Identities=16% Similarity=0.188 Sum_probs=68.0
Q ss_pred EEEEEecCCCC-CCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhC--CCccCCeEEEEEEccc
Q 002280 551 VAIFIGGISRT-LSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLN--GLKVGGQVLTAVQAVL 627 (943)
Q Consensus 551 ~~LfV~NLp~~-~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~Ln--G~~~~gr~L~V~~A~~ 627 (943)
.+|||+|||+. +++++|+++|++||.|..|.|++ ++|||||+|.+.++|.+|+..|+ +..|.|++|.|.+|..
T Consensus 26 ~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~----~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 26 RVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR----MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK 101 (112)
T ss_dssp CEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET----TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred CEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec----CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcc
Confidence 39999999998 99999999999999999999875 58999999999999999999886 4569999999999865
Q ss_pred CC
Q 002280 628 DG 629 (943)
Q Consensus 628 ~~ 629 (943)
..
T Consensus 102 ~~ 103 (112)
T 1x4f_A 102 YK 103 (112)
T ss_dssp CS
T ss_pred cc
Confidence 44
No 254
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.25 E-value=3.8e-12 Score=118.24 Aligned_cols=82 Identities=13% Similarity=0.225 Sum_probs=66.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHHccCCcccccc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSI 539 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~LnG~~l~Gr~ 539 (943)
.....+|||+|||+.+|+++|+++|..||..-++..+ ..+.+.. +.++|||||+|.+.++|..||.+|+..|.|+.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v---~i~~~~~-g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~ 83 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGI---HFLLNRD-GKRRGDALIEMESEQDVQKALEKHRMYMGQRY 83 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTE---ECCCCTT-STTCSEEEEEBSSHHHHHHHHTTTTCCSSSSC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceE---EEEECCC-CCEeeEEEEEECCHHHHHHHHHhCcceeCCeE
Confidence 3457899999999999999999999998852111112 2334444 88999999999999999999999999999999
Q ss_pred ccccCC
Q 002280 540 LKIKRP 545 (943)
Q Consensus 540 LkV~rp 545 (943)
|.|.+.
T Consensus 84 i~V~~a 89 (107)
T 2lmi_A 84 VEVYEI 89 (107)
T ss_dssp CCCEEC
T ss_pred EEEEEC
Confidence 998753
No 255
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=1.7e-11 Score=112.71 Aligned_cols=77 Identities=10% Similarity=0.206 Sum_probs=70.2
Q ss_pred EEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccC
Q 002280 551 VAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLD 628 (943)
Q Consensus 551 ~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~ 628 (943)
.+|||+|||..+++++|+++|++||.|..|.|+.+ ++.++|||||+|.+.++|.+|+. ++..|.|+.|.|.++.+.
T Consensus 16 ~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a~~~ 93 (103)
T 2cqg_A 16 SDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLPNSK 93 (103)
T ss_dssp CCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECCCTT
T ss_pred CEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEecCCC
Confidence 38999999999999999999999999999999887 35678999999999999999998 477899999999998764
Q ss_pred C
Q 002280 629 G 629 (943)
Q Consensus 629 ~ 629 (943)
.
T Consensus 94 ~ 94 (103)
T 2cqg_A 94 Q 94 (103)
T ss_dssp C
T ss_pred C
Confidence 4
No 256
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=6.9e-12 Score=115.78 Aligned_cols=80 Identities=18% Similarity=0.140 Sum_probs=66.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcccccc
Q 002280 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~ 539 (943)
...++|||+|||+.+|+++|+++|+.||.+..+ ..+.+..++.++|||||+|.+.++|..|+. |||..|.|+.
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v------~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 94 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNI------HLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQP 94 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEE------EEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEE------EEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcE
Confidence 446799999999999999999999999853321 122333447789999999999999999999 9999999999
Q ss_pred ccccCCc
Q 002280 540 LKIKRPK 546 (943)
Q Consensus 540 LkV~rp~ 546 (943)
|.|....
T Consensus 95 l~V~~a~ 101 (106)
T 1p27_B 95 ISVDWCF 101 (106)
T ss_dssp CEEEESE
T ss_pred EEEEeec
Confidence 9998644
No 257
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.25 E-value=2.3e-11 Score=117.06 Aligned_cols=76 Identities=16% Similarity=0.226 Sum_probs=69.9
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCE-EEEeecChhHHHHHHHHhCCCccCC--eEEEEEEcccC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPC-AFIEYVDQLVTPKAIAGLNGLKVGG--QVLTAVQAVLD 628 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~-aFVeF~~~e~A~kAl~~LnG~~~~g--r~L~V~~A~~~ 628 (943)
.|||+||++.+|+++|+++|++||.|..|.+... .+|+ |||+|.+.++|.+|+..|||..|.| +.|+|.++.+.
T Consensus 30 ~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~---~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 30 RIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK---NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 106 (130)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE---TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCS
T ss_pred EEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC---CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCC
Confidence 8999999999999999999999999999988765 4677 9999999999999999999999987 99999999775
Q ss_pred CC
Q 002280 629 GS 630 (943)
Q Consensus 629 ~~ 630 (943)
..
T Consensus 107 ~l 108 (130)
T 3zzy_A 107 SL 108 (130)
T ss_dssp SC
T ss_pred ce
Confidence 44
No 258
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=3.2e-12 Score=120.17 Aligned_cols=79 Identities=19% Similarity=0.253 Sum_probs=66.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhc-cCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHHccCCccccc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLS-SGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGS 538 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~-~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~LnG~~l~Gr 538 (943)
....++|||+|||+.+|+++|+++|..||.+ ..+ ..+.+. ++.++|||||+|.+.++|..||.+|+..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v------~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr 84 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAV------HVLVDN-NGQGLGQALVQFKNEDDARKSERLHRKKLNGR 84 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTE------EECCCT-TSSCSSCEEEECSSHHHHHHHGGGCSEEETTE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeE------EEEECC-CCCcceEEEEEECCHHHHHHHHHhCCCccCCe
Confidence 3457899999999999999999999998753 222 122333 68899999999999999999999999999999
Q ss_pred cccccCC
Q 002280 539 ILKIKRP 545 (943)
Q Consensus 539 ~LkV~rp 545 (943)
.|.|.+.
T Consensus 85 ~i~v~~a 91 (114)
T 2cpy_A 85 EAFVHVV 91 (114)
T ss_dssp EEEEEEE
T ss_pred EEEEEEC
Confidence 9988743
No 259
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.25 E-value=6.3e-12 Score=115.66 Aligned_cols=80 Identities=21% Similarity=0.338 Sum_probs=66.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHh-hhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCc-cc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNN-FLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCS-FS 536 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~-~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~-l~ 536 (943)
..+.++|||+|||+.+|+++|+++|.+ ||.+..+ ..+.+. ++.++|||||+|.+.++|..||. |||.. |.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v------~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~ 78 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGG------KVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLG 78 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEE------EEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEE------EEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccC
Confidence 345689999999999999999999999 9864332 122333 67789999999999999999999 99999 99
Q ss_pred cccccccCCc
Q 002280 537 GSILKIKRPK 546 (943)
Q Consensus 537 Gr~LkV~rp~ 546 (943)
|+.|.|....
T Consensus 79 g~~l~v~~a~ 88 (104)
T 2dhg_A 79 SKPVRLSVAI 88 (104)
T ss_dssp SSCCCCCBCC
T ss_pred CEeEEEEEcc
Confidence 9999998653
No 260
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.25 E-value=4e-12 Score=122.46 Aligned_cols=82 Identities=24% Similarity=0.289 Sum_probs=68.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccccc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr 538 (943)
..+.++|||+|||+.+|+++|+++|..||.+..+ ..+.+..++.++|||||+|.+.++|.+||. |||..|.|+
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v------~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~ 116 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADV------SIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGR 116 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEE------EEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEE------EEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 3557899999999999999999999998853321 122333457889999999999999999999 999999999
Q ss_pred cccccCCcc
Q 002280 539 ILKIKRPKE 547 (943)
Q Consensus 539 ~LkV~rp~d 547 (943)
+|.|.....
T Consensus 117 ~l~V~~a~~ 125 (129)
T 2kxn_B 117 RIRVDFSIT 125 (129)
T ss_dssp CCEESCCSS
T ss_pred EEEEEEecC
Confidence 999986543
No 261
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=2.3e-12 Score=118.48 Aligned_cols=81 Identities=26% Similarity=0.334 Sum_probs=67.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccccc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr 538 (943)
....++|||+|||+.+|+++|+++|++||.+..+ ..+.+..++.++|||||+|.+.++|..||. |||..|.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v------~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 85 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRI------YLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHL 85 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEE------EEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEE------EEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCc
Confidence 3457899999999999999999999998853321 122333457788999999999999999999 999999999
Q ss_pred cccccCCc
Q 002280 539 ILKIKRPK 546 (943)
Q Consensus 539 ~LkV~rp~ 546 (943)
.|+|....
T Consensus 86 ~l~v~~a~ 93 (103)
T 2cq0_A 86 ILNVEWAK 93 (103)
T ss_dssp ECEEEESS
T ss_pred EEEEEECC
Confidence 99998544
No 262
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.25 E-value=3.5e-12 Score=117.35 Aligned_cols=80 Identities=20% Similarity=0.279 Sum_probs=66.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHHccCCcccccc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSI 539 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~LnG~~l~Gr~ 539 (943)
....++|||+|||+.+|+++|+++|.+|+ +. .+ ..+.+..++.++|||||+|.+.++|..||.|||..|.|+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~---~v---~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~ 84 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IR---SV---RLVRDKDTDKFKGFCYVEFDEVDSLKEALTYDGALLGDRS 84 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EE---EE---EEEECSSSCSEEEEEEEEESSHHHHHHHGGGTTCEETTEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ce---EE---EEeecCCCCccceEEEEEECCHHHHHHHHhhCCCeECCeE
Confidence 34578999999999999999999998875 22 22 1334445678899999999999999999999999999999
Q ss_pred ccccCCc
Q 002280 540 LKIKRPK 546 (943)
Q Consensus 540 LkV~rp~ 546 (943)
|.|....
T Consensus 85 l~V~~a~ 91 (103)
T 2dng_A 85 LRVDIAE 91 (103)
T ss_dssp CEEEECC
T ss_pred EEEEEec
Confidence 9998544
No 263
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.25 E-value=4.4e-12 Score=118.05 Aligned_cols=80 Identities=20% Similarity=0.147 Sum_probs=66.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcccccc
Q 002280 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~ 539 (943)
...++|||+|||+.+|+++|+++|+.||.+..+ ..+.+..++.++|||||+|.+.++|..|+. |||..|.|+.
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v------~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 97 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNI------HLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQT 97 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEE------ECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEE------EEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 456899999999999999999999999853322 122333457789999999999999999999 9999999999
Q ss_pred ccccCCc
Q 002280 540 LKIKRPK 546 (943)
Q Consensus 540 LkV~rp~ 546 (943)
|.|....
T Consensus 98 l~V~~a~ 104 (110)
T 1oo0_B 98 IQVDWCF 104 (110)
T ss_dssp CEEEESE
T ss_pred EEEEEcc
Confidence 9998543
No 264
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=4.5e-12 Score=116.53 Aligned_cols=79 Identities=22% Similarity=0.233 Sum_probs=65.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccccc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr 538 (943)
....++|||+|||+.+|+++|+++|.+||.+..+ ..+.+ ++.++|||||+|.+.++|..||. |||..|.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v------~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 83 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSA------KVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATK 83 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEE------EEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEE------EEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 3467899999999999999999999998853322 11222 56789999999999999999999 999999999
Q ss_pred cccccCCc
Q 002280 539 ILKIKRPK 546 (943)
Q Consensus 539 ~LkV~rp~ 546 (943)
.|.|....
T Consensus 84 ~l~V~~a~ 91 (103)
T 2d9p_A 84 PLYVALAQ 91 (103)
T ss_dssp BCEEEECS
T ss_pred EEEEEEec
Confidence 99998544
No 265
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.24 E-value=1.3e-11 Score=114.76 Aligned_cols=73 Identities=26% Similarity=0.343 Sum_probs=62.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcccc--
Q 002280 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSG-- 537 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~G-- 537 (943)
...++|||+|||+.+|+++|+++|.+||. |..+.+... |||||+|.+.++|..||. |||..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~------------i~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 79 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGD------------VCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHE 79 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSC------------EEEEEEETT-TEEEEEESSHHHHHHHHHHSSSEEEECTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------EeEEEEecC-CEEEEEECCHHHHHHHHHHHCcCCccCCc
Confidence 45689999999999999999999999883 444544444 999999999999999999 99999999
Q ss_pred ---ccccccCCc
Q 002280 538 ---SILKIKRPK 546 (943)
Q Consensus 538 ---r~LkV~rp~ 546 (943)
+.|+|....
T Consensus 80 ~~~~~i~V~~a~ 91 (108)
T 1x4c_A 80 GETAYIRVKVDG 91 (108)
T ss_dssp SCEEEEEEEESS
T ss_pred CcceEEEEEeCC
Confidence 889887543
No 266
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.24 E-value=4.3e-12 Score=117.35 Aligned_cols=78 Identities=23% Similarity=0.253 Sum_probs=65.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcccccc
Q 002280 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~ 539 (943)
...++|||+|||+.+|+++|+++|..||.+..+ ..+.+. ++.++|||||+|.+.++|..|+. |||..|.|+.
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v------~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 99 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKA------AVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRP 99 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEE------EEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEE------EEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 456899999999999999999999999853322 122222 56789999999999999999999 9999999999
Q ss_pred ccccCC
Q 002280 540 LKIKRP 545 (943)
Q Consensus 540 LkV~rp 545 (943)
|+|...
T Consensus 100 l~V~~a 105 (107)
T 3ulh_A 100 MNIQLV 105 (107)
T ss_dssp CEEEEE
T ss_pred EEEEEe
Confidence 998753
No 267
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=1.2e-11 Score=112.55 Aligned_cols=74 Identities=15% Similarity=0.089 Sum_probs=62.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHH----HHHHhhhhccCcccccCCcceeeeeeecC---CCeeeEEeCCHHHHHHHHH-ccC
Q 002280 461 RPMRRLCVENLPLSASEKALM----EFLNNFLLSSGVQHVHGSLPCIGCVIQRE---KGQAFVEFLTAEDASAALC-CDG 532 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~----elF~~~G~~~g~~~i~~~~~v~~~~~~~s---kGyAFVeF~s~edA~~Al~-LnG 532 (943)
....+|||+|||+.+|+++|+ ++|++||. |..+.+... +|||||+|.+.++|..|+. |||
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~------------v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g 74 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGK------------VKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHR 74 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSC------------EEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCc------------EEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCC
Confidence 345799999999999999999 99999884 333333211 8999999999999999999 999
Q ss_pred CccccccccccCCc
Q 002280 533 CSFSGSILKIKRPK 546 (943)
Q Consensus 533 ~~l~Gr~LkV~rp~ 546 (943)
..|.|++|+|....
T Consensus 75 ~~~~gr~l~V~~a~ 88 (96)
T 2dgx_A 75 YKIGSKKILVSLAT 88 (96)
T ss_dssp EEETTEEEEEEECC
T ss_pred CEECCeEEEEEEcC
Confidence 99999999998654
No 268
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.24 E-value=2.1e-12 Score=118.43 Aligned_cols=80 Identities=21% Similarity=0.281 Sum_probs=64.7
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeee-eeecCCCeeeEEeCCHHHHHHHHHccCCccccc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGC-VIQREKGQAFVEFLTAEDASAALCCDGCSFSGS 538 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~-~~~~skGyAFVeF~s~edA~~Al~LnG~~l~Gr 538 (943)
....++|||+|||+.+|+++|+++|+.|| +..+. .+.+. .++.++|||||+|.+.++|..||.|||..|.|+
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~------i~~~~~~~g~~~g~afV~f~~~~~a~~Ai~l~g~~~~g~ 88 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVR------LPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNR 88 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEE------CSCCTTTTCCCCSCEEEEECCHHHHHHHHHTTTCCBTTB
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEE------EEecCCcCCccCeEEEEEECCHHHHHHHHhcCCCEECCe
Confidence 35578999999999999999999999887 44321 22333 367889999999999999999999999999999
Q ss_pred cccccCCc
Q 002280 539 ILKIKRPK 546 (943)
Q Consensus 539 ~LkV~rp~ 546 (943)
.|.|....
T Consensus 89 ~l~V~~a~ 96 (100)
T 2j76_E 89 RIRVDVAD 96 (100)
T ss_dssp CCCCEECC
T ss_pred EEEEEecc
Confidence 99998654
No 269
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=1.2e-11 Score=111.57 Aligned_cols=74 Identities=20% Similarity=0.329 Sum_probs=67.2
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCC-eeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCC-CccCCeEEEEEEcccCC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGP-LKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNG-LKVGGQVLTAVQAVLDG 629 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~-I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG-~~~~gr~L~V~~A~~~~ 629 (943)
+|||+|||..+++++|+++|++||. |..+.+. ++|||||+|.+.++|.+|+..||| ..|.|+.|.|.++.+..
T Consensus 10 ~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~ 84 (93)
T 2cqh_A 10 KLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-----KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKK 84 (93)
T ss_dssp CEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-----ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-----CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCcc
Confidence 8999999999999999999999999 6666553 489999999999999999999999 99999999999997654
Q ss_pred C
Q 002280 630 S 630 (943)
Q Consensus 630 ~ 630 (943)
.
T Consensus 85 ~ 85 (93)
T 2cqh_A 85 L 85 (93)
T ss_dssp C
T ss_pred c
Confidence 3
No 270
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=6.4e-12 Score=117.20 Aligned_cols=79 Identities=23% Similarity=0.341 Sum_probs=65.4
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccccc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr 538 (943)
....++|||+|||..+|+++|+++|++||.+..+..+ . ..+.++|||||+|.+.++|..|+. |||..|.|+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~------~--~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~ 97 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEII------F--NERGSKGFGFVTFENSADADRAREKLHGTVVEGR 97 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEEC------C--BTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEE------E--CCCCCceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 4567899999999999999999999999864432111 1 123479999999999999999999 999999999
Q ss_pred cccccCCc
Q 002280 539 ILKIKRPK 546 (943)
Q Consensus 539 ~LkV~rp~ 546 (943)
.|.|....
T Consensus 98 ~l~V~~a~ 105 (109)
T 2err_A 98 KIEVNNAT 105 (109)
T ss_dssp ECEEEECC
T ss_pred EEEEEECC
Confidence 99998654
No 271
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=1.3e-11 Score=111.92 Aligned_cols=76 Identities=13% Similarity=0.248 Sum_probs=68.8
Q ss_pred EEEEEecCCCCCCHHHHHHHHhhcCCeeEE-EEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccC
Q 002280 551 VAIFIGGISRTLSSKMVMEIVCAFGPLKAY-HFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLD 628 (943)
Q Consensus 551 ~~LfV~NLp~~~teedL~e~Fs~fG~I~~v-~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~ 628 (943)
.+|||+|||..+++++|+++|++||.|..| .|+.+.. .|.|||+|.+.++|.+|+..|||..|.|+.|.|.+|.+.
T Consensus 16 ~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~--~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 16 RKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE--TAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp CCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS--SEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred CEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 389999999999999999999999999999 4766533 344999999999999999999999999999999999775
No 272
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=5.2e-12 Score=115.67 Aligned_cols=77 Identities=27% Similarity=0.404 Sum_probs=66.0
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccccc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr 538 (943)
....++|||+|||+.+|+++|+++|.+||.+ . .+.+ .++.++|||||+|.+.++|..||. |||..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v------~---~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 81 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI------K---VPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGR 81 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE------E---CCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE------E---EEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCe
Confidence 4567999999999999999999999988752 1 2222 567889999999999999999999 999999999
Q ss_pred cccccCCc
Q 002280 539 ILKIKRPK 546 (943)
Q Consensus 539 ~LkV~rp~ 546 (943)
.|+|....
T Consensus 82 ~l~v~~a~ 89 (101)
T 2fc9_A 82 AIRLELQG 89 (101)
T ss_dssp EEEEEECS
T ss_pred EEEEEEcC
Confidence 99998543
No 273
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=5.4e-12 Score=116.30 Aligned_cols=79 Identities=22% Similarity=0.283 Sum_probs=66.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeee-ecCCCeeeEEeCCHHHHHHHHHccCCcccccc
Q 002280 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVI-QREKGQAFVEFLTAEDASAALCCDGCSFSGSI 539 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~-~~skGyAFVeF~s~edA~~Al~LnG~~l~Gr~ 539 (943)
.+.++|||+|||+.+|+++|+++|..|| +..+ . .+.+..+ +.++|||||+|.+.++|..||.|||..|.|+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v---~---i~~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~ 85 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAV---R---LPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGNKR 85 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEE---E---CCBCSSCTTSBCSCEEEEESSHHHHHHHHGGGTCEETTEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEE---E---EecCCCCCCCcCeEEEEEECCHHHHHHHHhcCCCEeCCcE
Confidence 4568999999999999999999999887 3332 1 3334444 78899999999999999999999999999999
Q ss_pred ccccCCc
Q 002280 540 LKIKRPK 546 (943)
Q Consensus 540 LkV~rp~ 546 (943)
|.|....
T Consensus 86 l~V~~a~ 92 (104)
T 1wi8_A 86 IRVDVAD 92 (104)
T ss_dssp CEEEECC
T ss_pred EEEEEcc
Confidence 9998543
No 274
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=3.2e-12 Score=121.92 Aligned_cols=79 Identities=19% Similarity=0.311 Sum_probs=67.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHHccCCccccccc
Q 002280 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSIL 540 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~LnG~~l~Gr~L 540 (943)
....+|||+|||+.+|+++|+++|..||.+..+ ..+.+..++.++|||||+|.+.++|..||.|||..|.|+.|
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~------~~~~~~~~g~~~G~afV~F~~~~~a~~Al~~~g~~~~gr~i 96 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDS------IYIAYGPNGKATGEGFVEFRNEADYKAALCRHKQYMGNRFI 96 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTT------CEEEECTTSSEEEEEEEEBSSSHHHHHHHTSCSBCSTTSCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccce------EEEEECCCCCCCeEEEEEECCHHHHHHHHHhCCCeECCcEE
Confidence 345799999999999999999999998864331 24455567889999999999999999999999999999999
Q ss_pred cccCC
Q 002280 541 KIKRP 545 (943)
Q Consensus 541 kV~rp 545 (943)
.|.+.
T Consensus 97 ~V~~a 101 (124)
T 1wel_A 97 QVHPI 101 (124)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 88743
No 275
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.23 E-value=1.2e-11 Score=112.19 Aligned_cols=78 Identities=24% Similarity=0.350 Sum_probs=64.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHH----HHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCc
Q 002280 460 NRPMRRLCVENLPLSASEKALM----EFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCS 534 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~----elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~ 534 (943)
..+.++|||+|||+.+|+++|+ ++|++||.+..+ .-..++.++|||||+|.+.++|..|+. |||..
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v---------~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 75 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDI---------LVSRSLKMRGQAFVIFKEVSSATNALRSMQGFP 75 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEE---------ECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEE---------EEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCE
Confidence 3567899999999999999999 999888843221 111346789999999999999999999 99999
Q ss_pred cccccccccCCc
Q 002280 535 FSGSILKIKRPK 546 (943)
Q Consensus 535 l~Gr~LkV~rp~ 546 (943)
|.|++|.|....
T Consensus 76 ~~g~~l~v~~a~ 87 (97)
T 1nu4_A 76 FYDKPMRIQYAK 87 (97)
T ss_dssp ETTEECEEEECS
T ss_pred ECCcEEEEEEcc
Confidence 999999998654
No 276
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.23 E-value=2.9e-12 Score=122.24 Aligned_cols=77 Identities=9% Similarity=0.192 Sum_probs=68.5
Q ss_pred EEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccC
Q 002280 551 VAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLD 628 (943)
Q Consensus 551 ~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~ 628 (943)
.+|||+|||+.+++++|+++|+.||.|..+.++.+ ++.++|||||+|.+.++|.+||. |||..|.|+.|.|.+|.+.
T Consensus 26 ~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~~ 104 (124)
T 1wel_A 26 FCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPITKK 104 (124)
T ss_dssp CEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEECHH
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECCHH
Confidence 39999999999999999999999999987444443 55679999999999999999999 9999999999999988653
No 277
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.23 E-value=2.9e-12 Score=117.35 Aligned_cols=77 Identities=17% Similarity=0.214 Sum_probs=68.5
Q ss_pred EEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccC
Q 002280 551 VAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLD 628 (943)
Q Consensus 551 ~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~ 628 (943)
.+|||+|||..+++++|+++|+.||.|.. .++.+ ++.++|||||+|.+.++|.+|+. |||..|.|+.|.|.+|.+.
T Consensus 18 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~~~ 95 (101)
T 1fj7_A 18 FNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGR 95 (101)
T ss_dssp EEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcCCC
Confidence 49999999999999999999999998877 33333 46789999999999999999998 9999999999999988664
Q ss_pred C
Q 002280 629 G 629 (943)
Q Consensus 629 ~ 629 (943)
.
T Consensus 96 ~ 96 (101)
T 1fj7_A 96 D 96 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 278
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.23 E-value=2.7e-12 Score=125.37 Aligned_cols=115 Identities=8% Similarity=0.078 Sum_probs=69.8
Q ss_pred CeeeEEeCCHHHHHHHHH-ccCCccccccccccC------CccceeEEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEe
Q 002280 512 GQAFVEFLTAEDASAALC-CDGCSFSGSILKIKR------PKEFVEVAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEV 584 (943)
Q Consensus 512 GyAFVeF~s~edA~~Al~-LnG~~l~Gr~LkV~r------p~d~~~~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~ 584 (943)
|+||.+|..++-+..++. +..+ ..|...--.. .......+|||+|||+.+++++|+++|++|| |..|.|+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~-~gg~~~g~~~g~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~ 79 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASM-TGGQQMGRGSGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEI 79 (139)
T ss_dssp --------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCC
T ss_pred CcccccccCccccchhcccchhc-cCCCCCCCCCCCcccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEE
Confidence 678888888887777765 3322 2222221110 0011122899999999999999999999999 66899887
Q ss_pred cC-CCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCC
Q 002280 585 NE-DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDG 629 (943)
Q Consensus 585 d~-~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~ 629 (943)
+. +.++|||||+|.+.++|.+|| .||+..|.|+.|.|..+.+..
T Consensus 80 d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~ 124 (139)
T 2hgn_A 80 GPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTG 124 (139)
T ss_dssp SSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSC
T ss_pred CCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCC
Confidence 74 567999999999999999999 799999999999998876543
No 279
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.23 E-value=4.7e-12 Score=123.18 Aligned_cols=82 Identities=23% Similarity=0.269 Sum_probs=66.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHHccCCcccccc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSI 539 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~LnG~~l~Gr~ 539 (943)
.....+|||+|||+.+|+++|+++|++||.+.++..+ ..+.+.. ++++|||||+|.+.++|.+||.|||..|.|+.
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v---~i~~d~~-g~srG~aFV~F~~~e~a~~Al~~~g~~l~gr~ 116 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGV---HFIYTRE-GRQSGEAFVELGSEDDVKMALKKDRESMGHRY 116 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTE---EEEECSS-SCEEEEEEEECSSHHHHHHHHTTTEEESSSSE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEE---EEEECCC-CCCCeEEEEEECCHHHHHHHHhcCCCEECCEE
Confidence 3457899999999999999999999998852111111 1333444 88999999999999999999999999999999
Q ss_pred ccccCC
Q 002280 540 LKIKRP 545 (943)
Q Consensus 540 LkV~rp 545 (943)
|.|...
T Consensus 117 i~V~~a 122 (136)
T 2hgl_A 117 IEVFKS 122 (136)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 988643
No 280
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.23 E-value=1.9e-11 Score=109.50 Aligned_cols=73 Identities=21% Similarity=0.318 Sum_probs=63.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccccc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr 538 (943)
....++|||+|||+.+|+++|+++|++||. |..+.+. ++||||+|.+.++|..|+. |||..|.|+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~------------v~~~~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~ 71 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGR------------VIECDVV--KDYAFVHMEKEADAKAAIAQLNGKEVKGK 71 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSC------------EEEEEEC--SSCEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCC------------EEEEEEE--CCEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 356789999999999999999999999984 3444443 6699999999999999999 999999999
Q ss_pred cccccCCc
Q 002280 539 ILKIKRPK 546 (943)
Q Consensus 539 ~LkV~rp~ 546 (943)
.|+|....
T Consensus 72 ~l~v~~a~ 79 (90)
T 2dnp_A 72 RINVELST 79 (90)
T ss_dssp ECEEEESC
T ss_pred EEEEEECC
Confidence 99998544
No 281
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.23 E-value=4.9e-12 Score=115.96 Aligned_cols=78 Identities=24% Similarity=0.316 Sum_probs=65.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccccc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr 538 (943)
....++|||+|||+.+|+++|+++|..|+. + ..+.+..++.++|||||+|.+.++|..||. |||..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~------~---~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 82 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSVR------A---RIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGN 82 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCSE------E---EEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCeE------E---EEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 456789999999999999999999986532 1 133444567889999999999999999999 999999999
Q ss_pred cccccCCc
Q 002280 539 ILKIKRPK 546 (943)
Q Consensus 539 ~LkV~rp~ 546 (943)
.|.|...+
T Consensus 83 ~l~V~~a~ 90 (102)
T 2fc8_A 83 KVTLDWAK 90 (102)
T ss_dssp ECEEEECC
T ss_pred EEEEEEec
Confidence 99998544
No 282
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.23 E-value=3e-11 Score=120.60 Aligned_cols=78 Identities=15% Similarity=0.215 Sum_probs=70.6
Q ss_pred EEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCC--eEEEEEEcccC
Q 002280 551 VAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGG--QVLTAVQAVLD 628 (943)
Q Consensus 551 ~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~g--r~L~V~~A~~~ 628 (943)
.+|||+||++.+++++|+++|++||.|..|.|... ..+|||||+|.+.++|.+|+..|||..|.| +.|.|.++.+.
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k--~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK--NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 124 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES--SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSS
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC--CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCC
Confidence 38999999999999999999999999999998653 257899999999999999999999999955 99999999876
Q ss_pred CC
Q 002280 629 GS 630 (943)
Q Consensus 629 ~~ 630 (943)
..
T Consensus 125 ~l 126 (164)
T 1sjr_A 125 SL 126 (164)
T ss_dssp SC
T ss_pred cc
Confidence 43
No 283
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.23 E-value=5.3e-12 Score=116.05 Aligned_cols=79 Identities=24% Similarity=0.375 Sum_probs=65.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccccccc
Q 002280 462 PMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSIL 540 (943)
Q Consensus 462 ~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~L 540 (943)
..++|||+|||+.+|+++|+++|+.||.+..+ ..+.+..++.++|||||+|.+.++|..|+. |||..|.|+.|
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~------~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 80 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSF------RLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRAL 80 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEE------EEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCB
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEE------EEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEE
Confidence 35799999999999999999999999853321 122333457789999999999999999998 99999999999
Q ss_pred cccCCc
Q 002280 541 KIKRPK 546 (943)
Q Consensus 541 kV~rp~ 546 (943)
+|....
T Consensus 81 ~v~~a~ 86 (104)
T 1p1t_A 81 RVDNAA 86 (104)
T ss_dssp EEEETT
T ss_pred EEEeCC
Confidence 998544
No 284
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=7.4e-12 Score=117.15 Aligned_cols=79 Identities=18% Similarity=0.118 Sum_probs=65.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccccc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr 538 (943)
....++|||+|||+.+|+++|+++|.+||.+..+. .+.+ ..+.++|||||+|.+.++|..||. |||..|.|+
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~------i~~~-~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 84 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRAD------ILED-KDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDR 84 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEE------EEEC-TTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE------EEEC-CCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCC
Confidence 45678999999999999999999999988533221 1122 236678999999999999999999 999999999
Q ss_pred cccccCC
Q 002280 539 ILKIKRP 545 (943)
Q Consensus 539 ~LkV~rp 545 (943)
.|.|...
T Consensus 85 ~l~v~~a 91 (114)
T 2do0_A 85 PMHVKMD 91 (114)
T ss_dssp ECEEEEC
T ss_pred EEEEEEc
Confidence 9999743
No 285
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.22 E-value=1.2e-11 Score=116.63 Aligned_cols=72 Identities=11% Similarity=0.072 Sum_probs=65.9
Q ss_pred EEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeE-----EEEEEc
Q 002280 551 VAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQV-----LTAVQA 625 (943)
Q Consensus 551 ~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~-----L~V~~A 625 (943)
.+|||+|||+.+++++|+++|++||.|..|.|+.+ |||||+|.+.++|.+||..|||..|.|+. |.|..+
T Consensus 17 ~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~ 91 (115)
T 3beg_B 17 NRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 91 (115)
T ss_dssp CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccC
Confidence 38999999999999999999999999999998765 99999999999999999999999999988 777766
Q ss_pred cc
Q 002280 626 VL 627 (943)
Q Consensus 626 ~~ 627 (943)
.+
T Consensus 92 ~~ 93 (115)
T 3beg_B 92 GP 93 (115)
T ss_dssp C-
T ss_pred CC
Confidence 54
No 286
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.22 E-value=8.1e-12 Score=119.10 Aligned_cols=80 Identities=18% Similarity=0.140 Sum_probs=66.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcccccc
Q 002280 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~ 539 (943)
...++|||+|||+.+|+++|+++|..||.+..+ ..+.+..++.++|||||+|.+.++|..||. |||..|.|+.
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v------~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 93 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNI------HLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQP 93 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEE------ECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEE------EEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 456799999999999999999999999853322 122333467789999999999999999998 9999999999
Q ss_pred ccccCCc
Q 002280 540 LKIKRPK 546 (943)
Q Consensus 540 LkV~rp~ 546 (943)
|.|....
T Consensus 94 l~v~~a~ 100 (126)
T 3ex7_B 94 ISVDWCF 100 (126)
T ss_dssp CEEEESE
T ss_pred EEEEEec
Confidence 9998543
No 287
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=3.2e-12 Score=120.20 Aligned_cols=79 Identities=20% Similarity=0.365 Sum_probs=66.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHHccCCcccccccc
Q 002280 462 PMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSILK 541 (943)
Q Consensus 462 ~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~LnG~~l~Gr~Lk 541 (943)
..++|||+|||+.+|+++|+++|..||.+..+ ..+.+..++.++|||||+|.+.++|..||.+++..|.|+.|.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v------~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~ 99 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDC------VVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVE 99 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEE------EEECCTTTSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEE------EEEECCCCCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEE
Confidence 35799999999999999999999998864332 122333457789999999999999999999999999999999
Q ss_pred ccCCc
Q 002280 542 IKRPK 546 (943)
Q Consensus 542 V~rp~ 546 (943)
|.+..
T Consensus 100 V~~a~ 104 (116)
T 1x4b_A 100 PKRAV 104 (116)
T ss_dssp EECCS
T ss_pred EEECC
Confidence 98654
No 288
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.22 E-value=1.1e-11 Score=121.13 Aligned_cols=77 Identities=17% Similarity=0.211 Sum_probs=69.1
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEE--------EEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEE
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAY--------HFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAV 623 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v--------~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~ 623 (943)
+|||+|||+.+++++|+++|++||.|..+ .+. .++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.
T Consensus 47 ~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~-~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 125 (143)
T 3egn_A 47 RIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLM-KEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQ 125 (143)
T ss_dssp EEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEE-EETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEec-cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 99999999999999999999999998763 222 356789999999999999999999999999999999999
Q ss_pred EcccCC
Q 002280 624 QAVLDG 629 (943)
Q Consensus 624 ~A~~~~ 629 (943)
+|.+..
T Consensus 126 ~a~~~~ 131 (143)
T 3egn_A 126 FARSAR 131 (143)
T ss_dssp ECCCSC
T ss_pred ECCCCC
Confidence 986643
No 289
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=2.1e-11 Score=110.23 Aligned_cols=74 Identities=22% Similarity=0.351 Sum_probs=65.5
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDG 629 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~ 629 (943)
+|||+|||..+++++|+++|++||.|..| +.+...++ ||||+|.+.++|.+|+. |||..|.|+.|.|.++.+..
T Consensus 10 ~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~-~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~ 83 (94)
T 2e5g_A 10 SVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV-FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKE 83 (94)
T ss_dssp EEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC-EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSC
T ss_pred EEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc-EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCC
Confidence 89999999999999999999999999987 34433334 99999999999999999 99999999999998775543
No 290
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.22 E-value=1.6e-11 Score=112.52 Aligned_cols=79 Identities=14% Similarity=0.337 Sum_probs=71.5
Q ss_pred eEEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecC-CCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccC
Q 002280 550 EVAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE-DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLD 628 (943)
Q Consensus 550 ~~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~-~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~ 628 (943)
..+|||+|||..+++++|+++|+.||.|..|.|+.+. +.++|||||+|.+.++|.+|+. +|..|.|+.|.|.++.+.
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~~ 86 (102)
T 2xs2_A 9 PNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIRK 86 (102)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCcC
Confidence 3499999999999999999999999999999998884 4568999999999999999998 999999999999998765
Q ss_pred CC
Q 002280 629 GS 630 (943)
Q Consensus 629 ~~ 630 (943)
..
T Consensus 87 ~~ 88 (102)
T 2xs2_A 87 QN 88 (102)
T ss_dssp C-
T ss_pred cc
Confidence 43
No 291
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.22 E-value=2.2e-11 Score=108.86 Aligned_cols=72 Identities=15% Similarity=0.245 Sum_probs=67.4
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLD 628 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~ 628 (943)
+|||+|||..+++++|+++|++| .|..+.+. .++|||||+|.+.++|.+|+..|||..+.|+.|.|.+|...
T Consensus 7 ~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 7 GILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp CEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE----GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred EEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe----CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 89999999999999999999999 99999885 47899999999999999999999999999999999988543
No 292
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.22 E-value=4.5e-12 Score=117.80 Aligned_cols=76 Identities=16% Similarity=0.177 Sum_probs=70.3
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCC---eeEEEEEecC-CCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEccc
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGP---LKAYHFEVNE-DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 627 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~---I~~v~l~~d~-~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~ 627 (943)
+|||+|||+.+++++|+++|+.||. |..|.|+.+. +.++|||||+|.+.++|.+||. |||..|+|+.|.|.++.+
T Consensus 13 ~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~~ 91 (107)
T 2lmi_A 13 LIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVYEINN 91 (107)
T ss_dssp EEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCEECCH
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEEECCH
Confidence 8999999999999999999999998 8899998774 5679999999999999999999 999999999999998865
Q ss_pred C
Q 002280 628 D 628 (943)
Q Consensus 628 ~ 628 (943)
.
T Consensus 92 ~ 92 (107)
T 2lmi_A 92 E 92 (107)
T ss_dssp H
T ss_pred H
Confidence 3
No 293
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=1.9e-11 Score=113.33 Aligned_cols=80 Identities=16% Similarity=0.168 Sum_probs=65.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhhh-ccCcccccCCcce-eeeeeecCCCeeeEEeCCHHHHHHHHH-cc--CCcc
Q 002280 461 RPMRRLCVENLPLSASEKALMEFLNNFLL-SSGVQHVHGSLPC-IGCVIQREKGQAFVEFLTAEDASAALC-CD--GCSF 535 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~elF~~~G~-~~g~~~i~~~~~v-~~~~~~~skGyAFVeF~s~edA~~Al~-Ln--G~~l 535 (943)
...++|||+|||+.+|+++|+++|..||. +..+. .+ .+..++.++|||||+|.+.++|..|+. |+ +..|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~------i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~ 79 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVI------VYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQL 79 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEE------CCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCB
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEE------EEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCcee
Confidence 45689999999999999999999999984 33221 11 233456889999999999999999999 85 5999
Q ss_pred ccccccccCCc
Q 002280 536 SGSILKIKRPK 546 (943)
Q Consensus 536 ~Gr~LkV~rp~ 546 (943)
.|+.|+|..+.
T Consensus 80 ~g~~l~V~~a~ 90 (109)
T 2dis_A 80 WGHQIAVDWAE 90 (109)
T ss_dssp TTBCCEEEESC
T ss_pred cCCeEEEEEcC
Confidence 99999998544
No 294
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=6.8e-12 Score=115.93 Aligned_cols=79 Identities=19% Similarity=0.278 Sum_probs=65.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHHccCCccccccc
Q 002280 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSIL 540 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~LnG~~l~Gr~L 540 (943)
....+|||+|||+.+|+++|+++|.+||.+.. .+ ..+.+ .++.++|||||+|.+.++|..||.+|+..|.|+.|
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~--~v---~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~~~~~~~gr~i 86 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPN--GM---TLPVD-FQGRSTGEAFVQFASQEIAEKALKKHKERIGHRYI 86 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEE--EE---ECCBC-SSSCBCSEEEEEESSHHHHHHHHTTTTCCSSSSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcce--eE---EEEEC-CCCCcceEEEEEECCHHHHHHHHHhCcchhCCcEE
Confidence 45689999999999999999999999885321 01 12233 57889999999999999999999999999999999
Q ss_pred cccCC
Q 002280 541 KIKRP 545 (943)
Q Consensus 541 kV~rp 545 (943)
.|...
T Consensus 87 ~v~~~ 91 (104)
T 1wg5_A 87 EIFKS 91 (104)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 88743
No 295
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.22 E-value=4.1e-12 Score=146.71 Aligned_cols=82 Identities=10% Similarity=0.060 Sum_probs=71.6
Q ss_pred CCCceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhcCCCCeEEEEEecC-CCCCcceeEEEEeCCHHHHHHHHHHhCC
Q 002280 652 KKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKY-GDSNISTIQACEGNENTASAGVGQNLTN 730 (943)
Q Consensus 652 ~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskFG~V~~V~I~r~-~~g~~~G~~FVeF~~~e~A~~Ai~~LnG 730 (943)
..++++|+|.||....+. ++|+++|++||.|+.|.|+.+ .++..+|||||+|.+.++|.+||.+|||
T Consensus 99 ~~~~~~lfV~nL~~~~te------------~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng 166 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTE------------SKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADG 166 (437)
T ss_pred CCCCCEEEEeCCCCCCCH------------HHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCC
Confidence 356789999999653332 688999999999999999987 4778899999999999999999999999
Q ss_pred CccCCCceEEEEecc
Q 002280 731 DETNEKGERLEEVTD 745 (943)
Q Consensus 731 r~~~~k~~~v~~~~~ 745 (943)
..|+++.|.|..+..
T Consensus 167 ~~i~gr~i~V~~a~~ 181 (437)
T 3pgw_S 167 KKIDGRRVLVDVERG 181 (437)
T ss_pred CEECCEEEEEEEeCC
Confidence 999999999988754
No 296
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.22 E-value=1.2e-11 Score=120.64 Aligned_cols=86 Identities=23% Similarity=0.261 Sum_probs=69.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccccc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr 538 (943)
..+.++|||+|||+.+|+++|+++|..||.+..+.. .....+....++.++|||||+|.+.++|..||. |||..|.|+
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~-~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 120 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQ-RIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGK 120 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHH-HHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccc-cceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 356789999999999999999999999996543210 000013334678999999999999999999999 999999999
Q ss_pred cccccCCc
Q 002280 539 ILKIKRPK 546 (943)
Q Consensus 539 ~LkV~rp~ 546 (943)
+|.|..+.
T Consensus 121 ~l~V~~a~ 128 (143)
T 3egn_A 121 PMVVQFAR 128 (143)
T ss_dssp ECEEEECC
T ss_pred EEEEEECC
Confidence 99998654
No 297
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=2.9e-11 Score=110.39 Aligned_cols=75 Identities=31% Similarity=0.351 Sum_probs=63.6
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccccc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr 538 (943)
....++|||+|||+.+|+++|+++|++||. | .|..+.+ .+|||||+|.+.++|..||. |||..|.|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~--g--------~v~~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 79 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKP--G--------AVERVKK--IRDYAFVHFSNREDAVEAMKALNGKVLDGS 79 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTST--T--------CEEEEEE--CSSEEEEEESSHHHHHHHHHHHSSEEETTE
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCC--c--------ceEEEEE--eCCeEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 356789999999999999999999999942 1 3444433 48899999999999999999 999999999
Q ss_pred cccccCCc
Q 002280 539 ILKIKRPK 546 (943)
Q Consensus 539 ~LkV~rp~ 546 (943)
.|+|....
T Consensus 80 ~l~v~~a~ 87 (99)
T 2cpd_A 80 PIEVTLAK 87 (99)
T ss_dssp EEEEECCC
T ss_pred EEEEEECC
Confidence 99998654
No 298
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.21 E-value=5.6e-12 Score=116.31 Aligned_cols=81 Identities=15% Similarity=0.224 Sum_probs=67.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHHccCCcccccc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSI 539 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~LnG~~l~Gr~ 539 (943)
....++|||+|||+.+|+++|+++|.+||.+..+ ..+.+..++.++|||||+|.+.++|..||..|+..|.|+.
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v------~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~ 86 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDC------VIMKDKTTNQSRGFGFVKFKDPNCVGTVLASRPHTLDGRN 86 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEE------EEEECSSSCCEEEEEEEEESSTTHHHHHHHHCSEEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEE------EEeeCCCCCCcceEEEEEECCHHHHHHHHHhCCCeECCEE
Confidence 4567899999999999999999999999853322 1223334577889999999999999999999999999999
Q ss_pred ccccCCc
Q 002280 540 LKIKRPK 546 (943)
Q Consensus 540 LkV~rp~ 546 (943)
|.|.+..
T Consensus 87 l~V~~a~ 93 (105)
T 2dh8_A 87 IDPKPCT 93 (105)
T ss_dssp EBCCCSC
T ss_pred EEEEEcc
Confidence 9998654
No 299
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.21 E-value=1.9e-11 Score=124.24 Aligned_cols=78 Identities=14% Similarity=0.225 Sum_probs=72.9
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecC-CCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE-DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDG 629 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~-~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~ 629 (943)
+|||+|||..+++++|+++|+.||.|..|.|+.+. +.++|||||+|.+.++|.+|+..|||..|.|+.|.|.+|.+..
T Consensus 90 ~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~~~~ 168 (177)
T 2f3j_A 90 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQI 168 (177)
T ss_dssp EEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEESSGG
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEecCCC
Confidence 99999999999999999999999999999998874 5679999999999999999999999999999999999986543
No 300
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.21 E-value=4.5e-11 Score=114.33 Aligned_cols=75 Identities=17% Similarity=0.151 Sum_probs=68.0
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCE-EEEeecChhHHHHHHHHhCCCccCC--eEEEEEEcccC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPC-AFIEYVDQLVTPKAIAGLNGLKVGG--QVLTAVQAVLD 628 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~-aFVeF~~~e~A~kAl~~LnG~~~~g--r~L~V~~A~~~ 628 (943)
.|||+||++.+++++|+++|++||.|..|.|... .|| |||+|.+.++|..|+..|||..|.| +.|.|.+|.+.
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~ 102 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR----NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPT 102 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES----SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCS
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCC
Confidence 7899999999999999999999999999998653 386 9999999999999999999999977 69999999775
Q ss_pred CC
Q 002280 629 GS 630 (943)
Q Consensus 629 ~~ 630 (943)
..
T Consensus 103 ~l 104 (124)
T 2e5i_A 103 RL 104 (124)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 301
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=1.3e-11 Score=115.93 Aligned_cols=80 Identities=14% Similarity=0.216 Sum_probs=66.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccccc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr 538 (943)
....++|||+|||+.+|+++|+++|.+||.+..+ ..+.+..++.++|||||+|.+.++|.+||. |++ .|.|+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v------~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~ 86 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEA------VVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGR 86 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEE------EESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEE------EEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCE
Confidence 4567899999999999999999999999853322 122333457789999999999999999999 888 89999
Q ss_pred cccccCCc
Q 002280 539 ILKIKRPK 546 (943)
Q Consensus 539 ~LkV~rp~ 546 (943)
.|.|....
T Consensus 87 ~l~V~~a~ 94 (116)
T 2cqd_A 87 KANVNLAY 94 (116)
T ss_dssp ECEEEEST
T ss_pred EEEEEEcc
Confidence 99998643
No 302
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=3.5e-12 Score=117.73 Aligned_cols=76 Identities=28% Similarity=0.291 Sum_probs=64.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHHccCCccccccc
Q 002280 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSIL 540 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~LnG~~l~Gr~L 540 (943)
...++|||+|||+.+|+++|+++|.+||. .. + ..+.+. +++++|||||+|.+.++|.+||.+|+..|.|+.|
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~---v---~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i 84 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNP-MR---V---HIEIGP-DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYV 84 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCC-SE---E---EEEESS-SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eE---E---EEEECC-CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEE
Confidence 44689999999999999999999998873 22 1 133443 7889999999999999999999999999999999
Q ss_pred cccC
Q 002280 541 KIKR 544 (943)
Q Consensus 541 kV~r 544 (943)
.|..
T Consensus 85 ~V~~ 88 (102)
T 1wez_A 85 ELFL 88 (102)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8874
No 303
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=7e-12 Score=117.53 Aligned_cols=77 Identities=19% Similarity=0.223 Sum_probs=65.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHHccCCcccccccc
Q 002280 462 PMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSILK 541 (943)
Q Consensus 462 ~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~LnG~~l~Gr~Lk 541 (943)
..++|||+|||+.+|+++|+++|..||.+..+ ..+.+..++.++|||||+|.+.++|..||.|||..|.|+.|.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v------~i~~~~~~g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~ 97 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDV------RIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQRLLGVPII 97 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEE------EECCSCCSSSCCCCEEEEESCGGGHHHHHHHTTEEETTEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEE------EEEecCCCCccCcEEEEEeCcHHHHHHHHHcCCCEeCCeEEE
Confidence 45899999999999999999999998853332 122334457889999999999999999999999999999999
Q ss_pred ccC
Q 002280 542 IKR 544 (943)
Q Consensus 542 V~r 544 (943)
|..
T Consensus 98 V~~ 100 (114)
T 2cq4_A 98 VQA 100 (114)
T ss_dssp EEE
T ss_pred EEe
Confidence 974
No 304
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.21 E-value=2.1e-11 Score=113.56 Aligned_cols=71 Identities=24% Similarity=0.407 Sum_probs=62.4
Q ss_pred CCCeEEEcCCCCC-CCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcccccc
Q 002280 462 PMRRLCVENLPLS-ASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (943)
Q Consensus 462 ~~rtLfVgNLP~~-vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~ 539 (943)
..++|||+|||+. +|+++|+++|.+||. |..+.+ ++|||||+|.+.++|..|+. |||..|.|+.
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~------------v~~v~i--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 91 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGR------------VAGCSV--HKGYAFVQYSNERHARAAVLGENGRVLAGQT 91 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSC------------CSEEEE--ETTEEEEECSSSHHHHHHHHHHTTCEETTEE
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCC------------eEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 4589999999999 999999999999884 333444 68999999999999999997 9999999999
Q ss_pred ccccCCc
Q 002280 540 LKIKRPK 546 (943)
Q Consensus 540 LkV~rp~ 546 (943)
|+|....
T Consensus 92 l~V~~a~ 98 (110)
T 1wf1_A 92 LDINMAG 98 (110)
T ss_dssp CCEEESC
T ss_pred EEEEECC
Confidence 9998644
No 305
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.21 E-value=9e-12 Score=111.85 Aligned_cols=78 Identities=23% Similarity=0.393 Sum_probs=64.9
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHHccCCccccccc
Q 002280 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSIL 540 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~LnG~~l~Gr~L 540 (943)
...++|||+|||+.+|+++|+++|..| .+.. + ..+.+ .++.++|||||+|.+.++|..||.|||..|.|+.|
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~---v---~i~~~-~~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i 79 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVA---I---RIVRN-AHGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYI 79 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSE---E---EEEEC-TTSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceE---E---EEEEC-CCCCCceEEEEEECCHHHHHHHHHhCCceeCCcEE
Confidence 456899999999999999999999887 4322 1 12233 56788999999999999999999999999999999
Q ss_pred cccCCc
Q 002280 541 KIKRPK 546 (943)
Q Consensus 541 kV~rp~ 546 (943)
.|....
T Consensus 80 ~v~~a~ 85 (91)
T 2dgw_A 80 EVFREK 85 (91)
T ss_dssp EEEEES
T ss_pred EEEECC
Confidence 987543
No 306
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=5.4e-11 Score=108.20 Aligned_cols=73 Identities=21% Similarity=0.358 Sum_probs=67.4
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCCC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGS 630 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~~ 630 (943)
+|||+|| .+++++|+++|++||.|..|.|. .++|||||+|.+.++|.+|+..|||..|.|+.|.|.+|.+...
T Consensus 17 ~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 89 (97)
T 1x5p_A 17 TLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 89 (97)
T ss_dssp EEEEECS--SCCHHHHHHHHTTTSCEEEEEEE----TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCCC
T ss_pred EEEEcCC--CCCHHHHHHHHhhCCCEEEEEec----CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCC
Confidence 9999996 89999999999999999999884 4689999999999999999999999999999999999876543
No 307
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.21 E-value=5.7e-12 Score=109.21 Aligned_cols=74 Identities=16% Similarity=0.296 Sum_probs=62.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccccccccc
Q 002280 464 RRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSILKI 542 (943)
Q Consensus 464 rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~LkV 542 (943)
++|||+|||+.+|+++|+++|++||.+..+ ..+.+..++.++|||||+|.+.++|..|+. ++ ..|.|++|.|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v------~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v 73 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKEC------LVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDP 73 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCE------EEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEE------EEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEE
Confidence 479999999999999999999999864332 122333567889999999999999999999 77 9999999988
Q ss_pred cC
Q 002280 543 KR 544 (943)
Q Consensus 543 ~r 544 (943)
.+
T Consensus 74 ~~ 75 (77)
T 1uaw_A 74 KV 75 (77)
T ss_dssp EE
T ss_pred Ee
Confidence 64
No 308
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.20 E-value=2.3e-11 Score=109.53 Aligned_cols=73 Identities=26% Similarity=0.392 Sum_probs=62.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccccc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr 538 (943)
....++|||+|||+.+|+++|+++|++||. |..+.+. ++||||+|.+.++|..|+. |||..|.|+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~------------v~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~ 72 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGP------------VIECDIV--KDYAFVHMERAEDAVEAIRGLDNTEFQGK 72 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSC------------CCEEEEC--SSEEEEEESCHHHHHHHHHHHTTEEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------eEEEEEE--CCEEEEEECCHHHHHHHHHHhCCCeeCCc
Confidence 355789999999999999999999999884 3333332 5699999999999999998 999999999
Q ss_pred cccccCCc
Q 002280 539 ILKIKRPK 546 (943)
Q Consensus 539 ~LkV~rp~ 546 (943)
.|+|....
T Consensus 73 ~l~V~~a~ 80 (92)
T 2dgt_A 73 RMHVQLST 80 (92)
T ss_dssp EEEEEESS
T ss_pred EEEEEEcc
Confidence 99998644
No 309
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.20 E-value=1.9e-11 Score=114.08 Aligned_cols=82 Identities=15% Similarity=0.227 Sum_probs=63.6
Q ss_pred cCCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHHccCCccccc
Q 002280 459 SNRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGS 538 (943)
Q Consensus 459 ~~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~LnG~~l~Gr 538 (943)
.....++|||+|||+.+|+++|+++|+.||.+..+ ..+.+..++.++|||||+|.+.++|..||..++..|.|+
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v------~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~ 94 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKEC------LVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELDSK 94 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEE------EECCCTTTCCCTTCEEEEESSHHHHHHHHHSSCEEETTE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEE------EEEECCCCCCcCcEEEEEECCHHHHHHHHHHCCCcCCCE
Confidence 34567899999999999999999999999853322 122333457889999999999999999999556999999
Q ss_pred cccccCCc
Q 002280 539 ILKIKRPK 546 (943)
Q Consensus 539 ~LkV~rp~ 546 (943)
.|.|....
T Consensus 95 ~l~V~~a~ 102 (109)
T 2rs2_A 95 TIDPKVAF 102 (109)
T ss_dssp EEEEEECC
T ss_pred EEEEEEcc
Confidence 99987543
No 310
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.20 E-value=2.7e-11 Score=111.45 Aligned_cols=72 Identities=24% Similarity=0.260 Sum_probs=62.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcccccc
Q 002280 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~ 539 (943)
...++|||+|||+.+|+++|+++|.+||. |..+.+. ++||||+|.+.++|..||. |||..|.|+.
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~------------i~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~ 74 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGK------------LERVKKL--KDYAFIHFDERDGAVKAMEEMNGKDLEGEN 74 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSC------------EEEEEEC--SSCEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCC------------EEEEEEE--CCEEEEEeCCHHHHHHHHHHHCCCccCCCE
Confidence 45689999999999999999999999984 3333332 7799999999999999999 9999999999
Q ss_pred ccccCCc
Q 002280 540 LKIKRPK 546 (943)
Q Consensus 540 LkV~rp~ 546 (943)
|.|....
T Consensus 75 l~v~~a~ 81 (103)
T 2dgu_A 75 IEIVFAK 81 (103)
T ss_dssp EEEEECC
T ss_pred EEEEEcC
Confidence 9998543
No 311
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.20 E-value=2.2e-11 Score=110.65 Aligned_cols=72 Identities=21% Similarity=0.285 Sum_probs=61.7
Q ss_pred CCCCCeEEEcCCCC-CCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcccc
Q 002280 460 NRPMRRLCVENLPL-SASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSG 537 (943)
Q Consensus 460 ~~~~rtLfVgNLP~-~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~G 537 (943)
..+.++|||+|||+ .+|+++|+++|++||. |..+.+ .+|||||+|.+.++|..|+. |||..|.|
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~------------v~~v~i--~~g~afV~f~~~~~A~~A~~~l~g~~~~g 72 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGH------------IMQINI--KNAFGFIQFDNPQSVRDAIECESQEMNFG 72 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCC------------CCEEEE--ETTEEEEEESCHHHHHHHHHHHTCSSCBT
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCC------------EEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence 35678999999998 9999999999999884 333333 38999999999999999999 99999999
Q ss_pred ccccccCC
Q 002280 538 SILKIKRP 545 (943)
Q Consensus 538 r~LkV~rp 545 (943)
++|+|...
T Consensus 73 ~~l~V~~a 80 (96)
T 2kvi_A 73 KKLILEVS 80 (96)
T ss_dssp TTBCEEEE
T ss_pred cEEEEEEc
Confidence 99999854
No 312
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.20 E-value=7.7e-12 Score=113.36 Aligned_cols=75 Identities=25% Similarity=0.351 Sum_probs=65.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcccccc
Q 002280 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~ 539 (943)
...++|||+|||+.+|+++|+++|..||.+. .+ ..++.++|||||+|.+.++|..|+. |||..|.|++
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~---------~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 82 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIR---------LV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRS 82 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEEC---------CE--EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEE---------Ee--CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 4568999999999999999999999887421 12 4667889999999999999999999 9999999999
Q ss_pred ccccCCc
Q 002280 540 LKIKRPK 546 (943)
Q Consensus 540 LkV~rp~ 546 (943)
|.|....
T Consensus 83 l~v~~a~ 89 (96)
T 1fjc_A 83 VSLYYTG 89 (96)
T ss_dssp EEEEECS
T ss_pred EEEEEcC
Confidence 9998654
No 313
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=3.6e-11 Score=109.40 Aligned_cols=73 Identities=21% Similarity=0.229 Sum_probs=65.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccccc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr 538 (943)
....++|||+|| .+|+++|+++|.+|| .|..+.++.++|||||+|.+.++|..||. |||..|.|+
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G------------~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~ 77 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFG------------NIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESV 77 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTS------------CEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCC------------CEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 346789999996 899999999999988 55677778899999999999999999998 999999999
Q ss_pred cccccCCc
Q 002280 539 ILKIKRPK 546 (943)
Q Consensus 539 ~LkV~rp~ 546 (943)
+|+|.+..
T Consensus 78 ~l~v~~a~ 85 (97)
T 1x5p_A 78 QLKVNIAR 85 (97)
T ss_dssp EEEEECCS
T ss_pred EEEEEECC
Confidence 99998654
No 314
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.20 E-value=3.2e-11 Score=116.68 Aligned_cols=79 Identities=25% Similarity=0.301 Sum_probs=66.1
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccccc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr 538 (943)
....++|||+|||+.+|+++|+++|.+||.+..+ ..+.+..++.++|||||+|.+.++|.+|+. |||..|.|+
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v------~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 133 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDI------QIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGR 133 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEE------ECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTE
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEE------EEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 3567899999999999999999999999853332 122333457889999999999999999998 999999999
Q ss_pred cccccC
Q 002280 539 ILKIKR 544 (943)
Q Consensus 539 ~LkV~r 544 (943)
.|+|..
T Consensus 134 ~l~v~~ 139 (140)
T 2ku7_A 134 TIRVNL 139 (140)
T ss_dssp EEEEEC
T ss_pred EEEEEe
Confidence 999864
No 315
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=3.7e-11 Score=108.63 Aligned_cols=74 Identities=23% Similarity=0.343 Sum_probs=61.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCC-eeeEEeCCHHHHHHHHHccCCcccccc
Q 002280 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKG-QAFVEFLTAEDASAALCCDGCSFSGSI 539 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skG-yAFVeF~s~edA~~Al~LnG~~l~Gr~ 539 (943)
...++|||+|||+.+|+++|+++|.+||.+ ..+......| ||||+|.+.++|..||.|||..|.|+.
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v------------~~v~~~~~~g~~afV~f~~~~~a~~ai~l~g~~~~g~~ 73 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPV------------ASVVMDKDKGVFAIVEMGDVGAREAVLSQSQHSLGGHR 73 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCE------------EEEEECSSSCCEEEEEESSHHHHHHHHTCSCCEETTEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCe------------EEEEEcCCCCcEEEEEECCHHHHHHHHhcCCeEECCEE
Confidence 456899999999999999999999998843 2232221111 999999999999999999999999999
Q ss_pred ccccCCc
Q 002280 540 LKIKRPK 546 (943)
Q Consensus 540 LkV~rp~ 546 (943)
|.|....
T Consensus 74 l~V~~a~ 80 (94)
T 2e5g_A 74 LRVRPRE 80 (94)
T ss_dssp CCCBCSC
T ss_pred EEEEECC
Confidence 9998644
No 316
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=3.1e-11 Score=113.59 Aligned_cols=73 Identities=19% Similarity=0.291 Sum_probs=66.3
Q ss_pred EEEEE--ecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCcc-----CCeEEEEE
Q 002280 551 VAIFI--GGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKV-----GGQVLTAV 623 (943)
Q Consensus 551 ~~LfV--~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~-----~gr~L~V~ 623 (943)
.+||| +||+..+++++|+++|++||.|..|.|+. ++|||||+|.+.++|.+|+..|||..| .|++|.|.
T Consensus 26 ~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~----~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~ 101 (114)
T 2cq2_A 26 QSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLN 101 (114)
T ss_dssp SEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT----TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEE
T ss_pred CEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEE
Confidence 38999 77999999999999999999999988754 489999999999999999999999988 68899999
Q ss_pred Eccc
Q 002280 624 QAVL 627 (943)
Q Consensus 624 ~A~~ 627 (943)
++..
T Consensus 102 ~a~~ 105 (114)
T 2cq2_A 102 FVEK 105 (114)
T ss_dssp EESC
T ss_pred eccc
Confidence 8853
No 317
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.19 E-value=1.1e-11 Score=118.39 Aligned_cols=82 Identities=22% Similarity=0.239 Sum_probs=65.8
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHHccCCcccccc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSI 539 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~LnG~~l~Gr~ 539 (943)
.....+|||+|||+.+|+++|+++|++||.+.+ .+..+..+.+ .+++++|||||+|.+.++|.+||.+|+..|.|+.
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g--~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~~~~~l~gR~ 96 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITG--GKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRKHKDLLGKRY 96 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTT--GGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTTTTEESSSCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccC--CcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHhCCCeeCCeE
Confidence 355789999999999999999999999985321 1111112333 4688999999999999999999999999999999
Q ss_pred ccccC
Q 002280 540 LKIKR 544 (943)
Q Consensus 540 LkV~r 544 (943)
|.|..
T Consensus 97 i~V~~ 101 (123)
T 2dha_A 97 IELFR 101 (123)
T ss_dssp ECCEE
T ss_pred EEEEE
Confidence 88753
No 318
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.18 E-value=1.3e-11 Score=118.00 Aligned_cols=75 Identities=12% Similarity=0.189 Sum_probs=68.1
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCe----eEEEEEec-CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcc
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPL----KAYHFEVN-EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAV 626 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I----~~v~l~~d-~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~ 626 (943)
+|||+|||+.+++++|+++|++||.| ..|.|+.+ ++.++|||||+|.+.++|.+||.. |+..|+|+.|.|..+.
T Consensus 25 ~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~~a~ 103 (123)
T 2dha_A 25 IVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELFRST 103 (123)
T ss_dssp EEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCEEEC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEECC
Confidence 89999999999999999999999986 57888877 456799999999999999999985 9999999999998875
Q ss_pred c
Q 002280 627 L 627 (943)
Q Consensus 627 ~ 627 (943)
+
T Consensus 104 ~ 104 (123)
T 2dha_A 104 A 104 (123)
T ss_dssp H
T ss_pred H
Confidence 4
No 319
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.18 E-value=4.1e-11 Score=108.06 Aligned_cols=70 Identities=17% Similarity=0.198 Sum_probs=59.2
Q ss_pred CCCe-EEEcCCCCCCCHHHHH----HHHHhhh-hccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCc
Q 002280 462 PMRR-LCVENLPLSASEKALM----EFLNNFL-LSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCS 534 (943)
Q Consensus 462 ~~rt-LfVgNLP~~vTEedL~----elF~~~G-~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~ 534 (943)
+..| |||+|||+.+++++|+ ++|.+|| . |+++ ++ |+|||+|.+.++|+.|+. |||..
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~------------Vl~V-tg---G~AfV~F~~~esA~~A~~~l~G~~ 70 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGK------------VLSI-TG---CSAILRFINQDSAERAQKRMENED 70 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCC------------EEEC-CT---TCEEEEESSHHHHHHHHHHHTTCC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCe------------eEEE-ec---CEEEEEECCHHHHHHHHHHhcCCc
Confidence 4556 9999999999999854 8998884 4 3444 22 999999999999999999 99999
Q ss_pred cccccccccCCcc
Q 002280 535 FSGSILKIKRPKE 547 (943)
Q Consensus 535 l~Gr~LkV~rp~d 547 (943)
|.|++|+|..++.
T Consensus 71 l~gr~i~v~~A~~ 83 (96)
T 2diu_A 71 VFGNRIIVSFTPK 83 (96)
T ss_dssp SSSSCCEEESSCC
T ss_pred cCCceEEEEecCC
Confidence 9999999987664
No 320
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.18 E-value=5e-12 Score=113.20 Aligned_cols=76 Identities=25% Similarity=0.357 Sum_probs=63.8
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccccccccc
Q 002280 464 RRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSILKI 542 (943)
Q Consensus 464 rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~LkV 542 (943)
++|||+|||+.+|+++|+++|++||.+..+ ..+.+..++.++|||||+|.+.+ |..|+. |||..|.|+.|+|
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v------~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V 74 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNV------KLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRV 74 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEE------EECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSE
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEE------EEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEE
Confidence 589999999999999999999999864332 12233345788999999999999 999999 9999999999999
Q ss_pred cCCc
Q 002280 543 KRPK 546 (943)
Q Consensus 543 ~rp~ 546 (943)
..+.
T Consensus 75 ~~a~ 78 (90)
T 2ki2_A 75 TEAN 78 (90)
T ss_dssp EEC-
T ss_pred EEcC
Confidence 8654
No 321
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.18 E-value=6.4e-11 Score=108.65 Aligned_cols=86 Identities=7% Similarity=0.024 Sum_probs=74.7
Q ss_pred CceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhcCCCCeEEEEEecCCC-CCcceeEEEEeCCHHHHHHHHHHhCCCc
Q 002280 654 PTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYGD-SNISTIQACEGNENTASAGVGQNLTNDE 732 (943)
Q Consensus 654 ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskFG~V~~V~I~r~~~-g~~~G~~FVeF~~~e~A~~Ai~~LnGr~ 732 (943)
..++|+|.||.. +++..+..+.++|+++|++||.|.+|.|+.+.. |..+|||||+|.+.++|.+|+..|||..
T Consensus 5 ~~~~vfV~nLp~------v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~ 78 (100)
T 3ns6_A 5 SDQYIVVNGAPV------IPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKR 78 (100)
T ss_dssp GGGEEEEESCCC------CBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCB
T ss_pred cCcEEEEeCCCc------CChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcc
Confidence 467899999965 234456667789999999999999999998854 8899999999999999999999999999
Q ss_pred cCC-CceEEEEecc
Q 002280 733 TNE-KGERLEEVTD 745 (943)
Q Consensus 733 ~~~-k~~~v~~~~~ 745 (943)
|.+ +.+.|.....
T Consensus 79 ~~g~r~l~V~~a~~ 92 (100)
T 3ns6_A 79 LDLKHRLFLYTMKD 92 (100)
T ss_dssp SSSSCBCEEEESHH
T ss_pred cCCCeEEEEEECch
Confidence 999 9999987643
No 322
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.18 E-value=4.3e-11 Score=106.13 Aligned_cols=68 Identities=24% Similarity=0.451 Sum_probs=64.1
Q ss_pred EEEEecCCCCCCHHHHHHHHhhc----C-------CeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEE
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAF----G-------PLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVL 620 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~f----G-------~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L 620 (943)
+|||+|||..+++++|+++|++| | .|..+.+..+ +|||||+|.+.++|.+|+ .|||..|.|+.|
T Consensus 8 ~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~----kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l 82 (87)
T 2hzc_A 8 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD----KNFAFLEFRSVDETTQAM-AFDGIIFQGQSL 82 (87)
T ss_dssp EEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS----SSEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC----CcEEEEEcCCHHHHHHHH-hcCCCEECCeEE
Confidence 89999999999999999999999 8 8999988654 899999999999999999 999999999999
Q ss_pred EEEE
Q 002280 621 TAVQ 624 (943)
Q Consensus 621 ~V~~ 624 (943)
.|.+
T Consensus 83 ~V~r 86 (87)
T 2hzc_A 83 KIRR 86 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9974
No 323
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.18 E-value=3.1e-11 Score=110.54 Aligned_cols=76 Identities=13% Similarity=0.188 Sum_probs=67.5
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDG 629 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~ 629 (943)
+|||+|||..+++++|+++|+.|+ .|.++.+ ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.+|.+..
T Consensus 17 ~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 93 (102)
T 2fc8_A 17 TLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKG 93 (102)
T ss_dssp SEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred EEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCCC
Confidence 899999999999999999999885 4555555 45668999999999999999999999999999999999997754
Q ss_pred C
Q 002280 630 S 630 (943)
Q Consensus 630 ~ 630 (943)
.
T Consensus 94 ~ 94 (102)
T 2fc8_A 94 E 94 (102)
T ss_dssp S
T ss_pred C
Confidence 3
No 324
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.18 E-value=3.1e-11 Score=119.62 Aligned_cols=81 Identities=19% Similarity=0.267 Sum_probs=67.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccccc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr 538 (943)
....++|||+|||+.+|+++|+++|++||.+..+ ..+.+..++.++|||||+|.+.++|..||. ||+..|.|+
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v------~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~ 109 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKI------IMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDR 109 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEE------EEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEE------EEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 3567899999999999999999999999853321 122333457788999999999999999999 999999999
Q ss_pred cccccCCc
Q 002280 539 ILKIKRPK 546 (943)
Q Consensus 539 ~LkV~rp~ 546 (943)
.|+|.++.
T Consensus 110 ~l~V~~a~ 117 (156)
T 1h2v_Z 110 IIRTDWDA 117 (156)
T ss_dssp ECEEEEES
T ss_pred EEEEEECC
Confidence 99998654
No 325
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.18 E-value=2.2e-11 Score=111.92 Aligned_cols=80 Identities=23% Similarity=0.235 Sum_probs=65.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHHccCCcccccc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSI 539 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~LnG~~l~Gr~ 539 (943)
....++|||+|||+.+|+++|+++|.+||.+..+ ..+.+..++.++|||||+|.+.++|..||. ++..|.|+.
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v------~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~g~~ 84 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMV------QVKKDLKTGHSKGFGFVRFTEYETQVKVMS-QRHMIDGRW 84 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEE------EEEECSSSCSEEEEEEEEESSHHHHHHHHH-SCEEETTEE
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEE------EEEecCCCCCccceEEEEECCHHHHHHHHH-cCCeeCCeE
Confidence 3557899999999999999999999999853322 122333457889999999999999999999 577899999
Q ss_pred ccccCCc
Q 002280 540 LKIKRPK 546 (943)
Q Consensus 540 LkV~rp~ 546 (943)
|.|....
T Consensus 85 l~v~~a~ 91 (103)
T 2cqg_A 85 CDCKLPN 91 (103)
T ss_dssp EEEECCC
T ss_pred EEEEecC
Confidence 9998654
No 326
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.17 E-value=1.1e-11 Score=117.83 Aligned_cols=79 Identities=19% Similarity=0.263 Sum_probs=66.3
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHHccCCcccccccc
Q 002280 462 PMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSILK 541 (943)
Q Consensus 462 ~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~LnG~~l~Gr~Lk 541 (943)
..++|||+|||+.+|+++|+++|++||.+..+ ..+.+..++.++|||||+|.+.++|..||.|||..|.|+.|.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v------~i~~~~~~~~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~ 108 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRI------TILCDKFSGHPKGYAYIEFAERNSVDAAVAMDETVFRGRTIK 108 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEE------EEEEECTTSSCEEEEEEEESSHHHHHHHHTTTTCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEE------EEEecCCCCCcccEEEEEECCHHHHHHHHhcCCCeECCeEEE
Confidence 35799999999999999999999999853321 122333467889999999999999999999999999999999
Q ss_pred ccCCc
Q 002280 542 IKRPK 546 (943)
Q Consensus 542 V~rp~ 546 (943)
|....
T Consensus 109 V~~a~ 113 (124)
T 2jwn_A 109 VLPKR 113 (124)
T ss_dssp EEESS
T ss_pred EEECC
Confidence 98654
No 327
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.79 E-value=2.5e-12 Score=121.09 Aligned_cols=79 Identities=16% Similarity=0.256 Sum_probs=72.7
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeE--------EEEEec--CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEE
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKA--------YHFEVN--EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLT 621 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~--------v~l~~d--~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~ 621 (943)
+|||+|||..+++++|+++|++||.|.. |.|+.+ ++.++|||||+|.+.++|.+|+..|||..|.|+.|.
T Consensus 9 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 88 (116)
T 2lcw_A 9 TIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIK 88 (116)
Confidence 8999999999999999999999999998 888776 356799999999999999999999999999999999
Q ss_pred EEEcccCCC
Q 002280 622 AVQAVLDGS 630 (943)
Q Consensus 622 V~~A~~~~~ 630 (943)
|.+|.+...
T Consensus 89 V~~a~~~~~ 97 (116)
T 2lcw_A 89 VSFATRRAD 97 (116)
Confidence 999876544
No 328
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.17 E-value=1.4e-11 Score=118.22 Aligned_cols=79 Identities=15% Similarity=0.238 Sum_probs=63.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHHccCCccccccc
Q 002280 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSIL 540 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~LnG~~l~Gr~L 540 (943)
....+|||+|||+.+|+++|+++|++|+. . ...+ ..+.+.. |+++|||||+|.+.++|.+||.+++..|.|+.|
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~~i-~-~~~v---~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~~~~~l~gR~I 113 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGLEI-V-PNGI---TLPVDPE-GKITGEAFVQFASQELAEKALGKHKERIGHRYI 113 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTSCE-E-EEEE---ECCCCSS-SSSCSEEEEEESSTTHHHHHHTTTTCCBTTBCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCc-e-eeEE---EEEECCC-CCCceEEEEEECCHHHHHHHHHHCCCEECCEEE
Confidence 45679999999999999999999988742 1 0011 1333434 889999999999999999999988899999999
Q ss_pred cccCC
Q 002280 541 KIKRP 545 (943)
Q Consensus 541 kV~rp 545 (943)
.|...
T Consensus 114 ~V~~a 118 (126)
T 2hgm_A 114 EVFKS 118 (126)
T ss_dssp CCEEE
T ss_pred EEEEC
Confidence 98753
No 329
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.17 E-value=5.3e-11 Score=106.97 Aligned_cols=71 Identities=17% Similarity=0.364 Sum_probs=61.5
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCc--cCCeEEEEEEcccCC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLK--VGGQVLTAVQAVLDG 629 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~--~~gr~L~V~~A~~~~ 629 (943)
+|||+|||+.+++++|+++|++||.|..|.|+.+ ++|||||+|.+.++|.+ |+|.. +.|+.|.|.+|.+..
T Consensus 13 ~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~---srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~k~ 85 (89)
T 3d2w_A 13 KVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP---FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEPKH 85 (89)
T ss_dssp EEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS---CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC---
T ss_pred EEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC---CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCCCC
Confidence 9999999999999999999999999999999875 89999999999999873 56655 469999999987643
No 330
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.17 E-value=1.6e-11 Score=114.78 Aligned_cols=81 Identities=19% Similarity=0.215 Sum_probs=64.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHH---HHHHhhhhccCcccccCCcceeeeee---ecCCCeeeEEeCCHHHHHHHHH-ccCC
Q 002280 461 RPMRRLCVENLPLSASEKALM---EFLNNFLLSSGVQHVHGSLPCIGCVI---QREKGQAFVEFLTAEDASAALC-CDGC 533 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~---elF~~~G~~~g~~~i~~~~~v~~~~~---~~skGyAFVeF~s~edA~~Al~-LnG~ 533 (943)
...++|||+|||+.+|+++|+ ++|.+||.+..+. .+.+..+ +.++|||||+|.+.++|..||. |||.
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~------i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~ 86 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVV------INNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNV 86 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEE------EECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEE------EecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCC
Confidence 346799999999999999999 9999998533321 1111122 2456899999999999999999 9999
Q ss_pred ccccccccccCCcc
Q 002280 534 SFSGSILKIKRPKE 547 (943)
Q Consensus 534 ~l~Gr~LkV~rp~d 547 (943)
.|.|++|+|.....
T Consensus 87 ~~~gr~l~V~~a~~ 100 (111)
T 2cpi_A 87 VVDGRTLKASLGTT 100 (111)
T ss_dssp EETTEEEEEESCCC
T ss_pred EECCEEEEEEeccc
Confidence 99999999986543
No 331
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.17 E-value=2e-11 Score=109.15 Aligned_cols=73 Identities=26% Similarity=0.406 Sum_probs=62.5
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcccccc
Q 002280 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~ 539 (943)
+..++|||+|||+.+|+++|+++|.+| .+.. +.+..++|||||+|.+.++|..|+. |||..+.|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~------------~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 69 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKY------------CYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKD 69 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCC------------EEEEGGGTEEEECCSCHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEE------------EEEeCCCcEEEEEECCHHHHHHHHHHhCCCeECCcE
Confidence 456899999999999999999999876 3222 2223789999999999999999999 9999999999
Q ss_pred ccccCCc
Q 002280 540 LKIKRPK 546 (943)
Q Consensus 540 LkV~rp~ 546 (943)
|+|..+.
T Consensus 70 l~V~~a~ 76 (88)
T 1wg1_A 70 LIVQLQP 76 (88)
T ss_dssp EEEEECC
T ss_pred EEEEEcC
Confidence 9998654
No 332
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.17 E-value=5.9e-11 Score=112.93 Aligned_cols=79 Identities=23% Similarity=0.233 Sum_probs=66.1
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcccccc
Q 002280 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~ 539 (943)
...++|||+|||+.+|+++|+++|..||.+..+ ..+.+. ++.++|||||+|.+.++|..|+. |||..|.|+.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v------~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 105 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKA------AVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRP 105 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEE------EEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEE------EEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 456899999999999999999999999864332 122222 67789999999999999999999 9999999999
Q ss_pred ccccCCc
Q 002280 540 LKIKRPK 546 (943)
Q Consensus 540 LkV~rp~ 546 (943)
|+|....
T Consensus 106 l~V~~a~ 112 (124)
T 2kt5_A 106 MDIQLVA 112 (124)
T ss_dssp EEEEEEC
T ss_pred EEEEEeC
Confidence 9998543
No 333
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=4.4e-11 Score=112.57 Aligned_cols=71 Identities=20% Similarity=0.238 Sum_probs=60.2
Q ss_pred CCCCeEEE--cCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcc--
Q 002280 461 RPMRRLCV--ENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSF-- 535 (943)
Q Consensus 461 ~~~rtLfV--gNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l-- 535 (943)
.+.++||| ||||+.+|+++|+++|++||. |.++.+..++|||||+|.+.++|..|+. |||..|
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~------------v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~ 90 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGL------------VDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVD 90 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSC------------EEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEEC
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCC------------eEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEcc
Confidence 45789999 889999999999999999994 3444455579999999999999999999 999887
Q ss_pred ---cccccccc
Q 002280 536 ---SGSILKIK 543 (943)
Q Consensus 536 ---~Gr~LkV~ 543 (943)
.|++|.|.
T Consensus 91 ~lg~g~~l~v~ 101 (114)
T 2cq2_A 91 DLGQKITLYLN 101 (114)
T ss_dssp TTSCEEECEEE
T ss_pred ccCCCcEEEEE
Confidence 56777664
No 334
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.17 E-value=2.8e-11 Score=113.95 Aligned_cols=70 Identities=26% Similarity=0.284 Sum_probs=58.4
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcccccc
Q 002280 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~ 539 (943)
+...+|||+|||+.+|+++|+++|.+||. |..+.+... |||||+|.+.++|..||. |||..|.|+.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~------------v~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 80 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGD------------VCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHE 80 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSC------------EEEEEECTT-SEEEEEESSHHHHHHHHHHHTTCBCCCTT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCC------------eEEEEEecC-CEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 34679999999999999999999999883 444544443 999999999999999999 9999999999
Q ss_pred cccc
Q 002280 540 LKIK 543 (943)
Q Consensus 540 LkV~ 543 (943)
|+|.
T Consensus 81 ~~~~ 84 (115)
T 3beg_B 81 GETA 84 (115)
T ss_dssp SCCC
T ss_pred eeeE
Confidence 5554
No 335
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.16 E-value=2.9e-11 Score=117.37 Aligned_cols=121 Identities=12% Similarity=0.113 Sum_probs=72.2
Q ss_pred EEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCCCcCCCCCCCCCCCCCCCcCCCCCCCceEEEeccCCCcCCCCC
Q 002280 592 CAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGSIMDNSGNPPFHGIPKHALPLLKKPTEVLKLKNVFNPEGFSS 671 (943)
Q Consensus 592 ~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~~~~~~~~~~~~~~ip~~~~~~~~~ps~vL~L~Nlv~~~~l~~ 671 (943)
+.|++|.+...+..|+..|+|-...|+.- +. . +.+ +....+++.|+|.||....+
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~----------------~-~~~----~~~~~~~~~l~V~nLp~~~t--- 60 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGS-MS----------------Y-GRP----PPDVEGMTSLKVDNLTYRTS--- 60 (135)
T ss_dssp ------------------------------CC----------------S-CCS----CSSGGGCCCEEEECCCSSCH---
T ss_pred cccccccCCCchhhhhhhccCCCCCCCCC-CC----------------c-CCC----CCCCCCCCEEEEeCCCCCCC---
Confidence 56778888888888988888765544321 00 0 000 11124577899999964322
Q ss_pred CChHHHHHHHHHHHHHhcCCCCeEEEEEecCC-CCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCceEEEEeccc
Q 002280 672 LSELEVEEVLEDVRLECARFGSVKSVNVVKYG-DSNISTIQACEGNENTASAGVGQNLTNDETNEKGERLEEVTDH 746 (943)
Q Consensus 672 i~~~~~~ei~eDlre~fskFG~V~~V~I~r~~-~g~~~G~~FVeF~~~e~A~~Ai~~LnGr~~~~k~~~v~~~~~~ 746 (943)
.++|+++|++||.|+.|.|+.+. .+..+|||||+|.+.++|.+|+..|||..|.++.+.|..+...
T Consensus 61 ---------e~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~ 127 (135)
T 2lea_A 61 ---------PDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYG 127 (135)
T ss_dssp ---------HHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCC
T ss_pred ---------HHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 37899999999999999999874 6788999999999999999999999999999999999887653
No 336
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.16 E-value=1.6e-11 Score=114.84 Aligned_cols=75 Identities=21% Similarity=0.339 Sum_probs=61.9
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHHccCCccccccccc
Q 002280 463 MRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSILKI 542 (943)
Q Consensus 463 ~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~LnG~~l~Gr~LkV 542 (943)
..+|||+|||+.+|+++|+++|++| .+. .+. .+.+. .++++|||||+|.+.++|.+||.+|+..|.|+.|.|
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~---~v~---i~~d~-~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V 87 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVD---AVH---LLKDH-VGRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEV 87 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCC---EEE---ECCCT-TCCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-Cee---EEE---EEECC-CCCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEE
Confidence 4689999999999999999999887 322 221 22333 388999999999999999999999999999999988
Q ss_pred cCC
Q 002280 543 KRP 545 (943)
Q Consensus 543 ~rp 545 (943)
...
T Consensus 88 ~~a 90 (109)
T 2dnn_A 88 SPA 90 (109)
T ss_dssp EEC
T ss_pred EEC
Confidence 643
No 337
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.15 E-value=1.1e-10 Score=120.22 Aligned_cols=107 Identities=13% Similarity=0.069 Sum_probs=87.0
Q ss_pred CHHHHHHHHH-c--cCCccccccccccCCcc-----c--------eeEEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEE
Q 002280 520 TAEDASAALC-C--DGCSFSGSILKIKRPKE-----F--------VEVAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFE 583 (943)
Q Consensus 520 s~edA~~Al~-L--nG~~l~Gr~LkV~rp~d-----~--------~~~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~ 583 (943)
+.+.+..|+. . ..+.+.+....|.+... . ...+|||+|||..+++++|.++|++||.|..|.|+
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~ 142 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMR 142 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEE
Confidence 6677888888 5 45667676666664321 1 11289999999999999999999999999999998
Q ss_pred ec-CCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEccc
Q 002280 584 VN-EDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 627 (943)
Q Consensus 584 ~d-~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~ 627 (943)
++ .+.++|||||+|.+.++|.+|+..++ ..|.|+.|.|.++..
T Consensus 143 ~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 143 RTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYKETDLLILFKDD 186 (193)
T ss_dssp ECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEETTEECEEEETTT
T ss_pred ECCCCCcccEEEEEECCHHHHHHHHHhCC-CeECCEEEEEEEhHH
Confidence 87 35568999999999999999998665 589999999997644
No 338
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.15 E-value=1e-10 Score=117.18 Aligned_cols=137 Identities=8% Similarity=0.021 Sum_probs=73.3
Q ss_pred EeecChhHHHHHHHHhCCCccC--CeEEEEEEcccCCCcCCCCCCCCCC---CCCCCcCCCCCCCceEEEeccCCCcCCC
Q 002280 595 IEYVDQLVTPKAIAGLNGLKVG--GQVLTAVQAVLDGSIMDNSGNPPFH---GIPKHALPLLKKPTEVLKLKNVFNPEGF 669 (943)
Q Consensus 595 VeF~~~e~A~kAl~~LnG~~~~--gr~L~V~~A~~~~~~~~~~~~~~~~---~ip~~~~~~~~~ps~vL~L~Nlv~~~~l 669 (943)
.+|.+.++|..|+..|++.... |+.+.+..+...... ...++. .-.....+....++++|+|.||....+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~----~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t- 85 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIH----SYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQ- 85 (165)
T ss_dssp -----------------------------------------------------------CCCCC-CEEEEEESCCTTCC-
T ss_pred hhhhccccccccchhhccccccccCCCCCCCcccccccc----CccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCC-
Confidence 6889999999999999987654 555555432111100 000000 000011122345688999999965333
Q ss_pred CCCChHHHHHHHHHHHHHhcCCCCeEEEEEecC-CCCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCceEEEEecccc
Q 002280 670 SSLSELEVEEVLEDVRLECARFGSVKSVNVVKY-GDSNISTIQACEGNENTASAGVGQNLTNDETNEKGERLEEVTDHK 747 (943)
Q Consensus 670 ~~i~~~~~~ei~eDlre~fskFG~V~~V~I~r~-~~g~~~G~~FVeF~~~e~A~~Ai~~LnGr~~~~k~~~v~~~~~~~ 747 (943)
.++|+.+|++||.|..|.|+.+ ..|..+|||||+|.+.++|.+|+..|||..|+++.+.|.++....
T Consensus 86 -----------~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 153 (165)
T 1rk8_A 86 -----------EDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKG 153 (165)
T ss_dssp -----------HHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC
T ss_pred -----------HHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCC
Confidence 2689999999999999999987 578889999999999999999999999999999999998876543
No 339
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.75 E-value=4e-12 Score=119.63 Aligned_cols=87 Identities=20% Similarity=0.197 Sum_probs=69.3
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcc--cccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQ--HVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFS 536 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~--~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~ 536 (943)
..+.++|||+|||+.+|+++|+++|++||.+.... ..+....+.+..++.++|||||+|.+.++|..||. |||..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 35678999999999999999999999998643210 00001233444668899999999999999999999 9999999
Q ss_pred cccccccCCc
Q 002280 537 GSILKIKRPK 546 (943)
Q Consensus 537 Gr~LkV~rp~ 546 (943)
|++|.|.++.
T Consensus 84 g~~l~V~~a~ 93 (116)
T 2lcw_A 84 GNPIKVSFAT 93 (116)
Confidence 9999998654
No 340
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.14 E-value=1.6e-11 Score=129.95 Aligned_cols=79 Identities=13% Similarity=0.029 Sum_probs=66.1
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhh--hccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccccc
Q 002280 462 PMRRLCVENLPLSASEKALMEFLNNFL--LSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (943)
Q Consensus 462 ~~rtLfVgNLP~~vTEedL~elF~~~G--~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr 538 (943)
..++|||+|||+.+|+++|+++|..|| .+..+ .++.+..++.++|||||+|.+.++|.+||. |||..|.|+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v------~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr 140 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEI------KFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQ 140 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEE------EEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTB
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEE------EEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCE
Confidence 567999999999999999999999998 43221 234455678899999999999999999999 999999999
Q ss_pred cccccCCc
Q 002280 539 ILKIKRPK 546 (943)
Q Consensus 539 ~LkV~rp~ 546 (943)
.|+|...+
T Consensus 141 ~l~V~~a~ 148 (229)
T 3q2s_C 141 NPVVTPVN 148 (229)
T ss_dssp CCEEEECC
T ss_pred EeEEEECC
Confidence 99987544
No 341
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.14 E-value=1.3e-10 Score=107.86 Aligned_cols=76 Identities=21% Similarity=0.206 Sum_probs=67.8
Q ss_pred EEEEecCCC-----CCCHHHHHHHHhhcCCeeEEEEEecC---CCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEE
Q 002280 552 AIFIGGISR-----TLSSKMVMEIVCAFGPLKAYHFEVNE---DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAV 623 (943)
Q Consensus 552 ~LfV~NLp~-----~~teedL~e~Fs~fG~I~~v~l~~d~---~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~ 623 (943)
+|+|.||.. .-++++|+++|++||.|..|.|+.+. +.++|+|||+|.+.++|.+|+..|||..|.|+.|.|.
T Consensus 10 ~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~ 89 (105)
T 2pe8_A 10 VVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKAC 89 (105)
T ss_dssp EEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred EEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEE
Confidence 899999963 23679999999999999999998874 3579999999999999999999999999999999999
Q ss_pred Eccc
Q 002280 624 QAVL 627 (943)
Q Consensus 624 ~A~~ 627 (943)
++.+
T Consensus 90 ~a~~ 93 (105)
T 2pe8_A 90 FYNL 93 (105)
T ss_dssp ECCH
T ss_pred EcCH
Confidence 9865
No 342
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.14 E-value=1.3e-11 Score=120.39 Aligned_cols=79 Identities=27% Similarity=0.326 Sum_probs=64.9
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHHccCCcccccc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSI 539 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~LnG~~l~Gr~ 539 (943)
....++|||+|||+.+|+++|+++|++|| +.. +. .+.+.. +.++|||||+|.+.++|..||.+|+..|.|+.
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~---v~---i~~d~~-g~srGfaFV~F~~~e~A~~Al~~~g~~l~gR~ 114 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVR---VH---IEIGPD-GRVTGEADVEFATHEEAVAAMSKDRANMQHRY 114 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSE---EE---CCCSSS-SCSSCCCEEECSHHHHHHHHTTCCSCSSSSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeE---EE---EEECCC-CCCceEEEEEeCCHHHHHHHHhhCCCEECCEE
Confidence 35568999999999999999999999987 322 21 334433 88999999999999999999999999999999
Q ss_pred ccccCCc
Q 002280 540 LKIKRPK 546 (943)
Q Consensus 540 LkV~rp~ 546 (943)
|.|....
T Consensus 115 i~V~~a~ 121 (139)
T 2hgn_A 115 IELFLNS 121 (139)
T ss_dssp CCCEECC
T ss_pred EEEEECC
Confidence 9987543
No 343
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.14 E-value=7.4e-11 Score=112.22 Aligned_cols=74 Identities=9% Similarity=0.092 Sum_probs=65.7
Q ss_pred EEEEecC----CCCCCHHHHHHHHhhcCCeeEEEEEec--CCCCCCEEEEeecC----hhH----HHHHHH--HhCCCcc
Q 002280 552 AIFIGGI----SRTLSSKMVMEIVCAFGPLKAYHFEVN--EDHEEPCAFIEYVD----QLV----TPKAIA--GLNGLKV 615 (943)
Q Consensus 552 ~LfV~NL----p~~~teedL~e~Fs~fG~I~~v~l~~d--~~~skG~aFVeF~~----~e~----A~kAl~--~LnG~~~ 615 (943)
.|||+|| |+.+++++|+++|+.||.|..|.++.| ++.++|||||+|.+ ++. |.+|+. .|||..|
T Consensus 4 kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I 83 (136)
T 2j8a_A 4 EIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFI 83 (136)
T ss_dssp EEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEEE
T ss_pred EEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCee
Confidence 7999999 999999999999999999999999999 45679999999996 433 788888 7999999
Q ss_pred CCeEEEEEEc
Q 002280 616 GGQVLTAVQA 625 (943)
Q Consensus 616 ~gr~L~V~~A 625 (943)
+|++|.|..-
T Consensus 84 ~Gr~irV~ln 93 (136)
T 2j8a_A 84 MGFKFEVILN 93 (136)
T ss_dssp TTEEEEEEEC
T ss_pred cCcEEEEEEC
Confidence 9999999843
No 344
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.14 E-value=3.7e-11 Score=112.49 Aligned_cols=75 Identities=20% Similarity=0.212 Sum_probs=60.2
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccccc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr 538 (943)
....++|||+|||+.+|+++|+++|..||.+..+ ..+.+. ++.++|||||+|.+.++|..||. |||..|.|+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~------~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~ 94 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVIST------RILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTP 94 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEE------EEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEE------EEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCC
Confidence 3456899999999999999999999998853332 122233 57789999999999999999999 999999655
Q ss_pred ccc
Q 002280 539 ILK 541 (943)
Q Consensus 539 ~Lk 541 (943)
.+.
T Consensus 95 ~~~ 97 (114)
T 1x5o_A 95 PGV 97 (114)
T ss_dssp TTS
T ss_pred ccc
Confidence 433
No 345
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.13 E-value=1.2e-10 Score=104.97 Aligned_cols=71 Identities=10% Similarity=0.136 Sum_probs=63.6
Q ss_pred EEEEecCCCCCCHHH----HHHHHhhc-CCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcc
Q 002280 552 AIFIGGISRTLSSKM----VMEIVCAF-GPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAV 626 (943)
Q Consensus 552 ~LfV~NLp~~~teed----L~e~Fs~f-G~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~ 626 (943)
.|||+|||+.+++++ |+++|++| |.|..|. .|+|||+|.+.++|.+|+..|||..|.|++|+|.+|.
T Consensus 11 ~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt--------gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~ 82 (96)
T 2diu_A 11 LLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT--------GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTP 82 (96)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC--------TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSC
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe--------cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecC
Confidence 499999999999987 56899999 5998871 2999999999999999999999999999999999997
Q ss_pred cCCC
Q 002280 627 LDGS 630 (943)
Q Consensus 627 ~~~~ 630 (943)
....
T Consensus 83 ~~sd 86 (96)
T 2diu_A 83 KNRE 86 (96)
T ss_dssp CSCC
T ss_pred CCcc
Confidence 6544
No 346
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=2.7e-10 Score=104.02 Aligned_cols=82 Identities=11% Similarity=0.084 Sum_probs=72.2
Q ss_pred CCCceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhcCCCCeEEEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCC
Q 002280 652 KKPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYGDSNISTIQACEGNENTASAGVGQNLTND 731 (943)
Q Consensus 652 ~~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskFG~V~~V~I~r~~~g~~~G~~FVeF~~~e~A~~Ai~~LnGr 731 (943)
..+.+.|+|.||....+. ++|+++|++||.|+.|.|+.+..+..+|||||+|.+.++|.+|+..|||.
T Consensus 14 ~~~~~~l~v~nlp~~~t~------------~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~ 81 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTK------------EELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGM 81 (100)
T ss_dssp CCCCSCEEEESCCTTCCH------------HHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTE
T ss_pred CCCCCEEEEeCCCCCCCH------------HHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCC
Confidence 346788999999654332 68999999999999999999888889999999999999999999999999
Q ss_pred ccCCCceEEEEecc
Q 002280 732 ETNEKGERLEEVTD 745 (943)
Q Consensus 732 ~~~~k~~~v~~~~~ 745 (943)
.|+++.+.|..+..
T Consensus 82 ~~~g~~l~v~~a~~ 95 (100)
T 2do4_A 82 TIKENIIKVAISNS 95 (100)
T ss_dssp ESSSCEEEEEECCC
T ss_pred EECCEEEEEEECCC
Confidence 99999999977654
No 347
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.12 E-value=5.2e-11 Score=114.27 Aligned_cols=74 Identities=11% Similarity=0.247 Sum_probs=66.5
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCee--EEEEEecC-CCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEccc
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLK--AYHFEVNE-DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVL 627 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~--~v~l~~d~-~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~ 627 (943)
+|||+|||+.+++++|+++|+.| .|. .|.|+.+. +.++|||||+|.+.++|.+||. +++..|+|+.|.|..+.+
T Consensus 44 ~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~a~~ 120 (126)
T 2hgm_A 44 FVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFKSSQ 120 (126)
T ss_dssp EEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEEECH
T ss_pred EEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEECCH
Confidence 89999999999999999999999 566 88888773 5679999999999999999998 578999999999988754
No 348
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.11 E-value=1.3e-10 Score=110.74 Aligned_cols=73 Identities=21% Similarity=0.358 Sum_probs=67.4
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCCC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGS 630 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~~ 630 (943)
+|||+|| .+++++|+++|++||.|..|.|. .++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.+...
T Consensus 41 ~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~ 113 (121)
T 2bz2_A 41 TLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD----PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 113 (121)
T ss_dssp EEEEECS--SCCHHHHHHHHSTTCCCSCEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSCC
T ss_pred EEEEcCC--CCCHHHHHHHHHccCCEEEEEEe----CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCCC
Confidence 9999996 69999999999999999999885 4789999999999999999999999999999999999876543
No 349
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.10 E-value=2.2e-10 Score=121.41 Aligned_cols=99 Identities=16% Similarity=0.200 Sum_probs=79.3
Q ss_pred HHHHccCCccccccccccCCc--------cceeEEEEEecCCCCC---------CHHHHHHHHhhcCCeeEEEEEecCCC
Q 002280 526 AALCCDGCSFSGSILKIKRPK--------EFVEVAIFIGGISRTL---------SSKMVMEIVCAFGPLKAYHFEVNEDH 588 (943)
Q Consensus 526 ~Al~LnG~~l~Gr~LkV~rp~--------d~~~~~LfV~NLp~~~---------teedL~e~Fs~fG~I~~v~l~~d~~~ 588 (943)
.+|..+...+.|+........ +....+|||+||+..+ ++++|+++|++||.|..|.|+.
T Consensus 102 ~~~~~~~~D~fGr~k~~~~~d~~~g~gs~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~---- 177 (240)
T 3u1l_A 102 LALRTEVLDCFGREKFADYREDMGGIGSFRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE---- 177 (240)
T ss_dssp HHHHCSSBCTTSSBCGGGTC---------CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG----
T ss_pred hcccccCcccccchhcccchhcccCcCccccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC----
Confidence 333334566667765544222 1223399999999998 7999999999999999999986
Q ss_pred CCCEEEEeecChhHHHHHHHHhCCCcc------------CCeEEEEEEcccC
Q 002280 589 EEPCAFIEYVDQLVTPKAIAGLNGLKV------------GGQVLTAVQAVLD 628 (943)
Q Consensus 589 skG~aFVeF~~~e~A~kAl~~LnG~~~------------~gr~L~V~~A~~~ 628 (943)
++|||||+|.+.++|..|+.+|+|..| .|+.|.|.+|...
T Consensus 178 ~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 178 SKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp GGTEEEEEESSHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC--
T ss_pred CCCEEEEEeCCHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccCC
Confidence 489999999999999999999999999 8999999999653
No 350
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.09 E-value=1.2e-10 Score=110.77 Aligned_cols=72 Identities=21% Similarity=0.227 Sum_probs=63.2
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcccccc
Q 002280 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~ 539 (943)
...++|||+|| .+|+++|+++|++||. |..+.+..++|||||+|.+.++|..|+. |||..|.|+.
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~------------I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~ 102 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGN------------IIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQ 102 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCC------------CSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCB
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCC------------EEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 45789999996 6999999999999883 4555566899999999999999999998 9999999999
Q ss_pred ccccCCc
Q 002280 540 LKIKRPK 546 (943)
Q Consensus 540 LkV~rp~ 546 (943)
|.|.+..
T Consensus 103 l~V~~a~ 109 (121)
T 2bz2_A 103 LKVNIAR 109 (121)
T ss_dssp CEEEECC
T ss_pred EEEEEeC
Confidence 9998654
No 351
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.08 E-value=1.4e-11 Score=113.03 Aligned_cols=76 Identities=18% Similarity=0.227 Sum_probs=63.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHHccCCcccccccc
Q 002280 462 PMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSILK 541 (943)
Q Consensus 462 ~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~LnG~~l~Gr~Lk 541 (943)
..++|||+|||+.+|+++|+++|+.||.+..+ ..+.+. ++.++|||||+|.+.++|..|+. +|..|.|+.|.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v------~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~-~~~~~~g~~l~ 79 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEV------KIITDR-TGVSKGYGFVSFYNDVDVQKIVE-SQINFHGKKLK 79 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEE------EEEECT-TSCEEEEEEEEESSCCCHHHHTT-CCCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEE------EEEECC-CCCccceEEEEECCHHHHHHHHh-CCCeECCEEEE
Confidence 45799999999999999999999999854332 122222 57789999999999999999999 99999999998
Q ss_pred ccCC
Q 002280 542 IKRP 545 (943)
Q Consensus 542 V~rp 545 (943)
|.++
T Consensus 80 v~~a 83 (102)
T 2xs2_A 80 LGPA 83 (102)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 8753
No 352
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.08 E-value=9.4e-11 Score=119.07 Aligned_cols=79 Identities=23% Similarity=0.237 Sum_probs=65.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcccccc
Q 002280 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSI 539 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~ 539 (943)
...++|||+|||+.+|+++|+++|.+||.+..+. .+.+. ++.++|||||+|.+.++|..||. |||..|.|++
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~------i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~ 158 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAA------VDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRP 158 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEE------ECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSB
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEE------EEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEE
Confidence 3467999999999999999999999998543321 11222 57889999999999999999999 9999999999
Q ss_pred ccccCCc
Q 002280 540 LKIKRPK 546 (943)
Q Consensus 540 LkV~rp~ 546 (943)
|+|....
T Consensus 159 l~V~~a~ 165 (177)
T 2f3j_A 159 MDIQLVA 165 (177)
T ss_dssp CEEEEES
T ss_pred EEEEEec
Confidence 9997543
No 353
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=1e-10 Score=109.86 Aligned_cols=74 Identities=20% Similarity=0.174 Sum_probs=57.3
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeee---ecCCCeeeEEeCCHHHHHHHHH-ccCCccc
Q 002280 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVI---QREKGQAFVEFLTAEDASAALC-CDGCSFS 536 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~---~~skGyAFVeF~s~edA~~Al~-LnG~~l~ 536 (943)
...++|||+|||+.+|+++|+++|++||.+. +. .+.+..+ |.++|||||+|.+.++|..||. |++ +.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~------~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~ 76 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VD------WPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--ED 76 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EE------CTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ET
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EE------EeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cC
Confidence 4578999999999999999999999998643 11 2223333 6889999999999999999998 732 55
Q ss_pred ccccccc
Q 002280 537 GSILKIK 543 (943)
Q Consensus 537 Gr~LkV~ 543 (943)
|+.|.+.
T Consensus 77 G~~~~~~ 83 (114)
T 2dnl_A 77 GKLYLCV 83 (114)
T ss_dssp TEEEEEE
T ss_pred CcEEEec
Confidence 5555444
No 354
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=2.4e-10 Score=107.22 Aligned_cols=71 Identities=17% Similarity=0.322 Sum_probs=60.9
Q ss_pred EEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecC-----CCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEE
Q 002280 551 VAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE-----DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQ 624 (943)
Q Consensus 551 ~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~-----~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~ 624 (943)
.+|||+|||..+++++|+++|++||.|. +.++.+. +.++|||||+|.+.++|.+|+..|+ .+.|+.|.+..
T Consensus 9 ~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~~ 84 (114)
T 2dnl_A 9 RKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCVS 84 (114)
T ss_dssp CCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEEC
T ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEecc
Confidence 3899999999999999999999999999 7776653 4679999999999999999999994 36667666653
No 355
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.07 E-value=9.9e-11 Score=104.41 Aligned_cols=74 Identities=14% Similarity=0.268 Sum_probs=62.9
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCCC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDGS 630 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~~ 630 (943)
+|||+|||..+++++|+++|++||.|..|.|+.+ ++|||||+|.+.++|.+|+.. +..+.|+.|.|.++.+...
T Consensus 7 ~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~---~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~~~ 80 (88)
T 1wf0_A 7 GVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP---FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPKHN 80 (88)
T ss_dssp EEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS---CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCCCC
T ss_pred EEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC---CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCCCC
Confidence 8999999999999999999999999999998765 799999999999999754221 2345899999998876543
No 356
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=2.7e-10 Score=103.08 Aligned_cols=74 Identities=20% Similarity=0.296 Sum_probs=61.7
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeee---eeecCCCeeeEEeCCHHHHHHHHH-ccCCccc
Q 002280 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGC---VIQREKGQAFVEFLTAEDASAALC-CDGCSFS 536 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~---~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~ 536 (943)
...++|||+|||+.+|+++|+++|..||. |..+ ......+.|||+|.+.++|..|+. |||..|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~------------v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~ 80 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGV------------VESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLE 80 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSC------------EEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCS
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCC------------eEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 34689999999999999999999999984 3333 222334559999999999999999 9999999
Q ss_pred cccccccCCc
Q 002280 537 GSILKIKRPK 546 (943)
Q Consensus 537 Gr~LkV~rp~ 546 (943)
|++|.|....
T Consensus 81 g~~l~V~~a~ 90 (96)
T 2e44_A 81 NFTLKVAYIP 90 (96)
T ss_dssp SCBCEEEECC
T ss_pred CcEEEEEEcC
Confidence 9999998654
No 357
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.05 E-value=2.8e-10 Score=113.62 Aligned_cols=73 Identities=23% Similarity=0.237 Sum_probs=60.0
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcccc--ccc
Q 002280 464 RRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSG--SIL 540 (943)
Q Consensus 464 rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~G--r~L 540 (943)
.+|||+|||+.+|+++|+++|++||.+.. +.+....++|||||+|.+.++|..|+. |||..|.| ++|
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~----------V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L 116 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLK----------IITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTL 116 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEE----------EEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCE
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEE----------EEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEE
Confidence 57999999999999999999999995322 112224457899999999999999999 99999966 899
Q ss_pred cccCCc
Q 002280 541 KIKRPK 546 (943)
Q Consensus 541 kV~rp~ 546 (943)
+|...+
T Consensus 117 ~V~~Ak 122 (164)
T 1sjr_A 117 RIDFSK 122 (164)
T ss_dssp EEEECS
T ss_pred EEEEec
Confidence 887544
No 358
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.05 E-value=3.2e-10 Score=108.36 Aligned_cols=70 Identities=24% Similarity=0.229 Sum_probs=57.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCe-eeEEeCCHHHHHHHHH-ccCCcccc--ccc
Q 002280 465 RLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQ-AFVEFLTAEDASAALC-CDGCSFSG--SIL 540 (943)
Q Consensus 465 tLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGy-AFVeF~s~edA~~Al~-LnG~~l~G--r~L 540 (943)
.|||+|||+.+|+++|.++|++||.+ .++.+....|| |||+|.+.++|..|+. |||..|.| ++|
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V------------~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l 94 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKV------------QRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTL 94 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCE------------EEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEE
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCE------------EEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEE
Confidence 57899999999999999999999853 33322222486 9999999999999999 99999987 578
Q ss_pred cccCCc
Q 002280 541 KIKRPK 546 (943)
Q Consensus 541 kV~rp~ 546 (943)
+|..++
T Consensus 95 ~V~~Ak 100 (124)
T 2e5i_A 95 KIEYAR 100 (124)
T ss_dssp EEECCS
T ss_pred EEEEec
Confidence 887544
No 359
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.03 E-value=8.2e-11 Score=109.25 Aligned_cols=68 Identities=21% Similarity=0.296 Sum_probs=52.2
Q ss_pred ccccccccCCCCCCCCCCCCC--c--cCCceEEEEecCHHHHHHHHHHhhcCccCCceEEEEeechhhHHhh
Q 002280 873 GMQSSAVENGDNENQDPNQGH--I--FEPGCVFVEYMRAEASCMAAHSLHRRLFDDRIVAVEYIPLNLYRAR 940 (943)
Q Consensus 873 ~~~e~~~~~~~~~~~~~d~~~--i--~~~g~v~v~f~~~~~a~~a~~~l~gr~f~~~~v~~~y~~~~~y~~~ 940 (943)
+|++.+..-|.+....+-.+. . ...|++||+|.+.++|++|+++||||||+||+|+|.|++.+.|++.
T Consensus 31 dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~~~~f~~~ 102 (105)
T 3v4m_A 31 DVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHRR 102 (105)
T ss_dssp HHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECHHHHHTT
T ss_pred HHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeCHHHHhhc
Confidence 444444433655544443321 1 2469999999999999999999999999999999999999999864
No 360
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.03 E-value=3e-10 Score=109.33 Aligned_cols=71 Identities=21% Similarity=0.276 Sum_probs=59.4
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeee-ecCCCe-eeEEeCCHHHHHHHHH-ccCCcccc--c
Q 002280 464 RRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVI-QREKGQ-AFVEFLTAEDASAALC-CDGCSFSG--S 538 (943)
Q Consensus 464 rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~-~~skGy-AFVeF~s~edA~~Al~-LnG~~l~G--r 538 (943)
-.|||+||++.+|+++|.++|++||.+ .++.+ ...+|| |||+|.+.++|..|+. |||..|.| +
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V------------~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~ 96 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTV------------LKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACC 96 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCE------------EEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEE
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCE------------EEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCc
Confidence 478899999999999999999999853 33222 245787 9999999999999999 99999988 8
Q ss_pred cccccCCc
Q 002280 539 ILKIKRPK 546 (943)
Q Consensus 539 ~LkV~rp~ 546 (943)
.|+|..++
T Consensus 97 ~LrI~~ak 104 (130)
T 3zzy_A 97 TLRIDFSK 104 (130)
T ss_dssp EEEEEECS
T ss_pred EEEEEecC
Confidence 88887543
No 361
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.00 E-value=1e-09 Score=102.73 Aligned_cols=75 Identities=17% Similarity=0.244 Sum_probs=65.6
Q ss_pred EEEEecCCCCCC-----------HHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEE
Q 002280 552 AIFIGGISRTLS-----------SKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVL 620 (943)
Q Consensus 552 ~LfV~NLp~~~t-----------eedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L 620 (943)
+|+|.||..... +++|+++|++||.|..|.| .+. .++|||||+|.+.++|.+|+..|||..|.|++|
T Consensus 17 ~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~-~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l 94 (112)
T 2dit_A 17 VVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR-HPDGVASVSFRDPEEADYCIQTLDGRWFGGRQI 94 (112)
T ss_dssp EEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT-CTTCEEEEECSCHHHHHHHHHHSTTCEETTEEC
T ss_pred EEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC-CCCEEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 899999954432 5899999999999999965 443 379999999999999999999999999999999
Q ss_pred EEEEcccC
Q 002280 621 TAVQAVLD 628 (943)
Q Consensus 621 ~V~~A~~~ 628 (943)
.|.++.+.
T Consensus 95 ~v~~a~~~ 102 (112)
T 2dit_A 95 TAQAWDGT 102 (112)
T ss_dssp EEEECCSC
T ss_pred EEEEeCCC
Confidence 99998664
No 362
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.00 E-value=2.4e-10 Score=101.90 Aligned_cols=73 Identities=18% Similarity=0.169 Sum_probs=56.6
Q ss_pred CCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeee-ecCCCeeeEEeCCHHHHHHHHHccCCcccccc
Q 002280 461 RPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVI-QREKGQAFVEFLTAEDASAALCCDGCSFSGSI 539 (943)
Q Consensus 461 ~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~-~~skGyAFVeF~s~edA~~Al~LnG~~l~Gr~ 539 (943)
...++|||+|||+.+|+++|+++|++||.+ ..+.+ ..++|||||+|.+.++|+.|+.. .+.+.|+.
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i------------~~v~i~~~~~g~afV~f~~~~~a~~~~~~-~~~~~g~~ 69 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDV------------MDVFIPKPFRAFAFVTFADDQIAQSLCGE-DLIIKGIS 69 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCC------------CEEECCSSCCSCCEEECSCHHHHHHTTTC-EEEETTEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCe------------eEEEEecCCCCEEEEEECCHHHHHHHhcC-CceeCCEE
Confidence 456899999999999999999999998853 33332 23799999999999999764332 34568888
Q ss_pred ccccCCc
Q 002280 540 LKIKRPK 546 (943)
Q Consensus 540 LkV~rp~ 546 (943)
|.|.++.
T Consensus 70 l~v~~a~ 76 (88)
T 1wf0_A 70 VHISNAE 76 (88)
T ss_dssp EEEECCC
T ss_pred EEEEecC
Confidence 8887543
No 363
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=98.99 E-value=2.4e-10 Score=117.69 Aligned_cols=81 Identities=19% Similarity=0.224 Sum_probs=65.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHHccCCcccccccc
Q 002280 462 PMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSILK 541 (943)
Q Consensus 462 ~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~LnG~~l~Gr~Lk 541 (943)
..++|||+|||+.+|+++|+++|++||.+..+ .+.....+.++|||||+|.+.++|..|+.+.+..|.|++|.
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v-------~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~~~~Gr~l~ 180 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNI-------QMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLL 180 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEE-------EEEECTTCCEEEEEEEEESSHHHHHHHHHCTTCEETTEECE
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEE-------EEEECCCCCcccEEEEEECCHHHHHHHHHhCCCeECCEEEE
Confidence 35899999999999999999999999853332 11111236789999999999999999999656799999999
Q ss_pred ccCCccce
Q 002280 542 IKRPKEFV 549 (943)
Q Consensus 542 V~rp~d~~ 549 (943)
|.+..+|.
T Consensus 181 V~~~~~y~ 188 (193)
T 2voo_A 181 ILFKDDYF 188 (193)
T ss_dssp EEETTTC-
T ss_pred EEEhHHHH
Confidence 99887764
No 364
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=98.99 E-value=6.1e-10 Score=100.01 Aligned_cols=72 Identities=17% Similarity=0.210 Sum_probs=54.5
Q ss_pred CCCCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeee-cCCCeeeEEeCCHHHHHHHHHccCC--ccc
Q 002280 460 NRPMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQ-REKGQAFVEFLTAEDASAALCCDGC--SFS 536 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~-~skGyAFVeF~s~edA~~Al~LnG~--~l~ 536 (943)
..+..+|||+|||+.+|+++|+++|++||. |.++.+. .++|||||+|.+.++|.. ++|. .+.
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~------------i~~v~i~~~srGfaFV~F~~~~~A~~---~~~~~~~~~ 72 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGE------------VVDVFIPKPFRAFAFVTFADDKVAQS---LCGEDLIIK 72 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSC------------EEEEECCSSCCSEEEEEESCHHHHHH---HTTCEEEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCC------------EEEEEEeeCCCCEEEEEECCHHHHHH---HcCCCcccC
Confidence 355789999999999999999999999984 3333332 379999999999999984 4554 445
Q ss_pred cccccccCCc
Q 002280 537 GSILKIKRPK 546 (943)
Q Consensus 537 Gr~LkV~rp~ 546 (943)
|+.|.|.++.
T Consensus 73 g~~v~v~~a~ 82 (89)
T 3d2w_A 73 GISVHISNAE 82 (89)
T ss_dssp TEEEEEEECC
T ss_pred CEEEEEEEcC
Confidence 8888877543
No 365
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=98.99 E-value=4.2e-10 Score=119.32 Aligned_cols=76 Identities=17% Similarity=0.121 Sum_probs=67.2
Q ss_pred CCCCCeEEEcCCCCCC---------CHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-
Q 002280 460 NRPMRRLCVENLPLSA---------SEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC- 529 (943)
Q Consensus 460 ~~~~rtLfVgNLP~~v---------TEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~- 529 (943)
....++|||||||..+ |+++|+++|++|| .|.++.+..++|||||+|.+.++|+.|+.
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG------------~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~a 198 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLG------------DIDRIRYVESKNCGFVKFKYQANAEFAKEA 198 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTS------------CEEEEEEEGGGTEEEEEESSHHHHHHHHHH
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccC------------CEEEEEEECCCCEEEEEeCCHHHHHHHHHH
Confidence 4568999999999998 7999999999998 55666666789999999999999999999
Q ss_pred ccCCcc------------ccccccccCCcc
Q 002280 530 CDGCSF------------SGSILKIKRPKE 547 (943)
Q Consensus 530 LnG~~l------------~Gr~LkV~rp~d 547 (943)
|+|..| .|+.|.|.++++
T Consensus 199 m~g~~l~~~~~~e~~~~~~gr~L~V~wA~~ 228 (240)
T 3u1l_A 199 MSNQTLLLPSDKEWDDRREGTGLLVKWANE 228 (240)
T ss_dssp HTTCCCCCTTSTTGGGGGGSCCCEEEECC-
T ss_pred hCCCEEeccccccccccCCCCEEEEEEccC
Confidence 999988 899999997764
No 366
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.97 E-value=1.3e-09 Score=114.04 Aligned_cols=84 Identities=19% Similarity=0.244 Sum_probs=72.5
Q ss_pred CCceEEEeccCCCcCCCCCCChHHHHHHHHHHHHHhcCCCCeEEEEEecCCC-----CCcceeEEEEeCCHHHHHHHHHH
Q 002280 653 KPTEVLKLKNVFNPEGFSSLSELEVEEVLEDVRLECARFGSVKSVNVVKYGD-----SNISTIQACEGNENTASAGVGQN 727 (943)
Q Consensus 653 ~ps~vL~L~Nlv~~~~l~~i~~~~~~ei~eDlre~fskFG~V~~V~I~r~~~-----g~~~G~~FVeF~~~e~A~~Ai~~ 727 (943)
.++.++.|.|+++++++. + ++.+||+++|++||.|.+|.|+++.. +...|++||+|.+.++|.+|+.+
T Consensus 122 ~~s~v~~l~n~v~~~e~~---~----e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~ 194 (222)
T 3dxb_A 122 MESTVMVLRNMVDPKDID---D----DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQA 194 (222)
T ss_dssp CBCSEEEEESSCCGGGCC---T----THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred cccccchhhcCCCHHHHH---H----HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHH
Confidence 346789999999988873 2 34578999999999999999987643 36889999999999999999999
Q ss_pred hCCCccCCCceEEEEe
Q 002280 728 LTNDETNEKGERLEEV 743 (943)
Q Consensus 728 LnGr~~~~k~~~v~~~ 743 (943)
|||++|+++.+.+...
T Consensus 195 l~gr~~~gr~i~~~~~ 210 (222)
T 3dxb_A 195 LNGRWFAGRKVVAEVY 210 (222)
T ss_dssp HTTCBSSSSBCEEEEC
T ss_pred hcCceECCeEEEEEEc
Confidence 9999999999998664
No 367
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.94 E-value=4e-10 Score=104.43 Aligned_cols=71 Identities=20% Similarity=0.235 Sum_probs=60.5
Q ss_pred EecCCCCCCHHHHHHHH------------hhcCCeeEEEEEecC-CCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEE
Q 002280 555 IGGISRTLSSKMVMEIV------------CAFGPLKAYHFEVNE-DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLT 621 (943)
Q Consensus 555 V~NLp~~~teedL~e~F------------s~fG~I~~v~l~~d~-~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~ 621 (943)
+.|||..+++++|++.| ++||.|..|.|+++. +.++|||||+|.+.++|.+|+..|||..|.|++|.
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 45666667776665555 999999999998874 45799999999999999999999999999999999
Q ss_pred EEEc
Q 002280 622 AVQA 625 (943)
Q Consensus 622 V~~A 625 (943)
|.++
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9875
No 368
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.90 E-value=1.9e-09 Score=102.20 Aligned_cols=76 Identities=20% Similarity=0.169 Sum_probs=65.8
Q ss_pred EEEEecCCC--CC---CHHHHHHHHhhcCCeeEEEEEecCC------CCCCEEEEeecChhHHHHHHHHhCCCccCCeEE
Q 002280 552 AIFIGGISR--TL---SSKMVMEIVCAFGPLKAYHFEVNED------HEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVL 620 (943)
Q Consensus 552 ~LfV~NLp~--~~---teedL~e~Fs~fG~I~~v~l~~d~~------~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L 620 (943)
+|+|.|+-. .+ .+++|+++|++||.|..|.|+.+.. .++|+|||+|.+.++|.+|+..|||..|+|+.|
T Consensus 22 vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i 101 (118)
T 3ue2_A 22 VMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKV 101 (118)
T ss_dssp EEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCcEE
Confidence 899999843 22 3589999999999999999988732 346999999999999999999999999999999
Q ss_pred EEEEccc
Q 002280 621 TAVQAVL 627 (943)
Q Consensus 621 ~V~~A~~ 627 (943)
.|.++..
T Consensus 102 ~v~~~~~ 108 (118)
T 3ue2_A 102 VAEVYDQ 108 (118)
T ss_dssp EEEEECH
T ss_pred EEEEcCh
Confidence 9998744
No 369
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=98.90 E-value=4e-10 Score=107.23 Aligned_cols=74 Identities=11% Similarity=0.118 Sum_probs=62.2
Q ss_pred CeEEEcCC----CCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCC----HHH----HHHHHH--
Q 002280 464 RRLCVENL----PLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLT----AED----ASAALC-- 529 (943)
Q Consensus 464 rtLfVgNL----P~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s----~ed----A~~Al~-- 529 (943)
..|||+|| |+.+|+.+|+++|++||.+..+ ..+.+..||.++|||||+|.+ +++ |..|+.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~------~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~ 76 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHF------EAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKH 76 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEE------EEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHT
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEE------EEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHh
Confidence 58999999 9999999999999999964433 366778899999999999996 433 777866
Q ss_pred -ccCCcccccccccc
Q 002280 530 -CDGCSFSGSILKIK 543 (943)
Q Consensus 530 -LnG~~l~Gr~LkV~ 543 (943)
|||..|.|++|+|.
T Consensus 77 ~lng~~I~Gr~irV~ 91 (136)
T 2j8a_A 77 ESSGCFIMGFKFEVI 91 (136)
T ss_dssp TTTCEEETTEEEEEE
T ss_pred hhcCCeecCcEEEEE
Confidence 79999999999986
No 370
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.76 E-value=1.3e-08 Score=113.32 Aligned_cols=64 Identities=22% Similarity=0.279 Sum_probs=55.4
Q ss_pred CCCCCeEEEcC--CCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcc
Q 002280 460 NRPMRRLCVEN--LPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSF 535 (943)
Q Consensus 460 ~~~~rtLfVgN--LP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l 535 (943)
+.++++||||| |++.+||++|+++|++||. |..+.+..++|||||+|.+.++|.+|++ |||..+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~------------V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~ 81 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGL------------VDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEV 81 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSC------------EEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCC------------eEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCcc
Confidence 45678999999 5789999999999999984 3445555579999999999999999999 999877
No 371
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.73 E-value=2.5e-08 Score=91.71 Aligned_cols=65 Identities=11% Similarity=0.121 Sum_probs=57.5
Q ss_pred CCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcccCC
Q 002280 560 RTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAVLDG 629 (943)
Q Consensus 560 ~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~~~~ 629 (943)
..+++++|+++|++||.|..|.|+. .++|||||+|.+.++|..|+..++| +.|++|.|.++.+..
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~---~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSS---KKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQP 91 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEES---SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEcc---CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCC
Confidence 5689999999999999999999873 5799999999999999999998665 579999999986644
No 372
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.70 E-value=1.8e-08 Score=112.29 Aligned_cols=70 Identities=20% Similarity=0.313 Sum_probs=61.4
Q ss_pred EEEEec--CCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCcc---CCe--EEEEEE
Q 002280 552 AIFIGG--ISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKV---GGQ--VLTAVQ 624 (943)
Q Consensus 552 ~LfV~N--Lp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~---~gr--~L~V~~ 624 (943)
+|||+| |+..+++++|+++|++||.|..|.+.. ++|||||+|.+.++|.+|+..|||..+ .|+ +|.|.+
T Consensus 20 ~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~ 95 (345)
T 3tht_A 20 SLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP----NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNF 95 (345)
T ss_dssp EEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT----TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEE
T ss_pred EEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEEE
Confidence 899999 578999999999999999999887643 689999999999999999999999887 345 566666
Q ss_pred c
Q 002280 625 A 625 (943)
Q Consensus 625 A 625 (943)
+
T Consensus 96 ~ 96 (345)
T 3tht_A 96 V 96 (345)
T ss_dssp C
T ss_pred e
Confidence 5
No 373
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.51 E-value=1.9e-07 Score=85.74 Aligned_cols=58 Identities=10% Similarity=0.014 Sum_probs=50.8
Q ss_pred HHHHHHhcCCCCeEEEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCceEEEEecc
Q 002280 682 EDVRLECARFGSVKSVNVVKYGDSNISTIQACEGNENTASAGVGQNLTNDETNEKGERLEEVTD 745 (943)
Q Consensus 682 eDlre~fskFG~V~~V~I~r~~~g~~~G~~FVeF~~~e~A~~Ai~~LnGr~~~~k~~~v~~~~~ 745 (943)
++|+++|++||.|+.|.|+. ..+|||||+|.+.++|..|+..++| +.++.+.|.+...
T Consensus 32 ~~L~~~F~~~G~V~~v~i~~----~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~ 89 (100)
T 2d9o_A 32 DVLLRLLQKYGEVLNLVLSS----KKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEG 89 (100)
T ss_dssp HHHHHHHHTTSCEEEEEEES----SSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSC
T ss_pred HHHHHHHHhcCCEEEEEEcc----CCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccC
Confidence 68999999999999999983 5789999999999999999999766 5788888877654
No 374
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.38 E-value=7.6e-07 Score=79.61 Aligned_cols=70 Identities=11% Similarity=0.243 Sum_probs=58.9
Q ss_pred EEEEecCCC----CCCH----HHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEE
Q 002280 552 AIFIGGISR----TLSS----KMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAV 623 (943)
Q Consensus 552 ~LfV~NLp~----~~te----edL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~ 623 (943)
+|+|.-.+. .+-. .+|.+.|++||.|..++++.+ .+||+|.+.++|.+|+. |||..++|+.|+|.
T Consensus 9 tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d------~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~ 81 (91)
T 2dnr_A 9 TVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED------KMWVTFLEGSSALNVLS-LNGKELLNRTITIA 81 (91)
T ss_dssp EEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS------SEEEEESSHHHHHHGGG-GTTCEETTEEEEEE
T ss_pred eEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC------CEEEEECChHHHHHHHh-cCCeEeCCeEEEEE
Confidence 677776652 2323 578999999999999999775 48999999999999998 99999999999999
Q ss_pred EcccC
Q 002280 624 QAVLD 628 (943)
Q Consensus 624 ~A~~~ 628 (943)
.+.|.
T Consensus 82 lkt~d 86 (91)
T 2dnr_A 82 LKSPS 86 (91)
T ss_dssp ECCCS
T ss_pred eCCCC
Confidence 88663
No 375
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.32 E-value=9.1e-07 Score=79.09 Aligned_cols=59 Identities=15% Similarity=0.162 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhcCCCCeEEEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCceEEEEec
Q 002280 678 EEVLEDVRLECARFGSVKSVNVVKYGDSNISTIQACEGNENTASAGVGQNLTNDETNEKGERLEEVT 744 (943)
Q Consensus 678 ~ei~eDlre~fskFG~V~~V~I~r~~~g~~~G~~FVeF~~~e~A~~Ai~~LnGr~~~~k~~~v~~~~ 744 (943)
.++..+|.+.|.+||+|..|+|+.+. +||+|.+.++|.+|+. |||..++++.++|....
T Consensus 26 ~~l~~~L~~~F~~~G~Vi~vr~~~d~-------~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt 84 (91)
T 2dnr_A 26 DALIDELLQQFASFGEVILIRFVEDK-------MWVTFLEGSSALNVLS-LNGKELLNRTITIALKS 84 (91)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSSS-------EEEEESSHHHHHHGGG-GTTCEETTEEEEEEECC
T ss_pred HHHHHHHHHHHHhCCCeEEEEEecCC-------EEEEECChHHHHHHHh-cCCeEeCCeEEEEEeCC
Confidence 34567889999999999999999854 7999999999999998 99999999999998765
No 376
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.29 E-value=1.1e-06 Score=91.65 Aligned_cols=104 Identities=18% Similarity=0.099 Sum_probs=74.6
Q ss_pred eEEeCCHHHHHHHHH--ccCCccccccccccCCccceeEEEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecC------
Q 002280 515 FVEFLTAEDASAALC--CDGCSFSGSILKIKRPKEFVEVAIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE------ 586 (943)
Q Consensus 515 FVeF~s~edA~~Al~--LnG~~l~Gr~LkV~rp~d~~~~~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~------ 586 (943)
++-+.+.++...+|. +.+.......+.+... +.......-.+++|.+.|++||.|..+.|+.+.
T Consensus 100 ~~G~~~~~~l~~~l~~~l~~~~~~s~v~~l~n~--------v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~ 171 (222)
T 3dxb_A 100 KVGALSKGQLKEFLDANLAGSAMESTVMVLRNM--------VDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEED 171 (222)
T ss_dssp EESCCCHHHHHHHHHHHSCCSCCBCSEEEEESS--------CCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTT
T ss_pred eccccChHHHHHHHHhhccccccccccchhhcC--------CCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccC
Confidence 444567777777777 4443332222222110 011112234568899999999999999998652
Q ss_pred CCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcc
Q 002280 587 DHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAV 626 (943)
Q Consensus 587 ~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~ 626 (943)
+.++|++||+|.+.++|.+|+..|||+.|+|++|.|.++.
T Consensus 172 ~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 172 AEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp CCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred cCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 2568999999999999999999999999999999999864
No 377
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.26 E-value=1.5e-06 Score=82.32 Aligned_cols=68 Identities=12% Similarity=0.070 Sum_probs=59.7
Q ss_pred EEEEecCCCC-CCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecC-hhHHHHHHHHhC--CCccCCeEEEEE
Q 002280 552 AIFIGGISRT-LSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVD-QLVTPKAIAGLN--GLKVGGQVLTAV 623 (943)
Q Consensus 552 ~LfV~NLp~~-~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~-~e~A~kAl~~Ln--G~~~~gr~L~V~ 623 (943)
.|+|+||+.. ++.++|+++|++||.|..|.+..+ ...|||.|.+ ..+|..|+..|| |..|.|..+++.
T Consensus 20 il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g----~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~e 91 (121)
T 1owx_A 20 LLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRG----AKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWE 91 (121)
T ss_dssp EEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTT----CSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEE
T ss_pred EEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecC----CCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEE
Confidence 8999999999 999999999999999999998775 3369999999 799999999995 677777766664
No 378
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.11 E-value=4e-06 Score=79.43 Aligned_cols=71 Identities=10% Similarity=-0.024 Sum_probs=59.3
Q ss_pred CCCCeEEEcCCCCC-CCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCC-HHHHHHHHH-cc--CCcc
Q 002280 461 RPMRRLCVENLPLS-ASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLT-AEDASAALC-CD--GCSF 535 (943)
Q Consensus 461 ~~~rtLfVgNLP~~-vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s-~edA~~Al~-Ln--G~~l 535 (943)
.....|||+||+.. +|+++|+++|++|| .|..|.+......|||.|.+ ..+|..|+. || +..|
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G------------~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i 83 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHG------------EIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQL 83 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSC------------CEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCT
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcC------------CEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEE
Confidence 45678999999999 99999999998887 55666666666789999999 899999998 84 6888
Q ss_pred cccccccc
Q 002280 536 SGSILKIK 543 (943)
Q Consensus 536 ~Gr~LkV~ 543 (943)
.|..+++.
T Consensus 84 ~g~~~~~e 91 (121)
T 1owx_A 84 RNKEVTWE 91 (121)
T ss_dssp TSSSEEEE
T ss_pred eCcEEEEE
Confidence 88776654
No 379
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.09 E-value=3.7e-06 Score=75.57 Aligned_cols=67 Identities=13% Similarity=0.272 Sum_probs=57.2
Q ss_pred EEEEecCCCC-----CCH----HHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEE
Q 002280 552 AIFIGGISRT-----LSS----KMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTA 622 (943)
Q Consensus 552 ~LfV~NLp~~-----~te----edL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V 622 (943)
+|+|.-++.. +-. .+|.+.|+.||.|..++++.+ .+||+|.+.++|.+||. |||..++|+.|+|
T Consensus 17 Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d------~~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V 89 (95)
T 1ufw_A 17 TVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG------QMLVTFADSHSALSVLD-VDGMKVKGRAVKI 89 (95)
T ss_dssp EEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT------EEEEECSCSHHHHHHHH-GGGSEETTEEEEE
T ss_pred eEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC------cEEEEEcChHHHHHHHh-cCCeeeCCeEEEE
Confidence 8888877632 222 468899999999999999876 39999999999999998 9999999999999
Q ss_pred EEc
Q 002280 623 VQA 625 (943)
Q Consensus 623 ~~A 625 (943)
...
T Consensus 90 ~~k 92 (95)
T 1ufw_A 90 SGP 92 (95)
T ss_dssp ECC
T ss_pred ecc
Confidence 854
No 380
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.06 E-value=1.4e-06 Score=78.33 Aligned_cols=58 Identities=7% Similarity=0.122 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhcCCCCeEEEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCCCccCCCceEEEEe
Q 002280 678 EEVLEDVRLECARFGSVKSVNVVKYGDSNISTIQACEGNENTASAGVGQNLTNDETNEKGERLEEV 743 (943)
Q Consensus 678 ~ei~eDlre~fskFG~V~~V~I~r~~~g~~~G~~FVeF~~~e~A~~Ai~~LnGr~~~~k~~~v~~~ 743 (943)
.++..+|.+.|..||+|..|+|..+. +||+|.+.++|.+|+. |||.+++++.++|...
T Consensus 35 ~~l~~~L~~~F~~~G~Vilvr~v~d~-------~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V~~k 92 (95)
T 1ufw_A 35 EDLRTELMQTLGSYGTIVLVRINQGQ-------MLVTFADSHSALSVLD-VDGMKVKGRAVKISGP 92 (95)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEETTE-------EEEECSCSHHHHHHHH-GGGSEETTEEEEEECC
T ss_pred HHHHHHHHHHHHHCCCEEEEEEecCc-------EEEEEcChHHHHHHHh-cCCeeeCCeEEEEecc
Confidence 45567899999999999999999864 7999999999999998 9999999999999764
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.80 E-value=6.2e-05 Score=69.00 Aligned_cols=70 Identities=17% Similarity=0.203 Sum_probs=65.1
Q ss_pred EEEEEecCCCCCCHHHHHHHHhhc-----CCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEE
Q 002280 551 VAIFIGGISRTLSSKMVMEIVCAF-----GPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQ 624 (943)
Q Consensus 551 ~~LfV~NLp~~~teedL~e~Fs~f-----G~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~ 624 (943)
.+|-+-|||..++...|+.+++.| |.|..|.|..| -+-|+|+|.+...|-+|.-+|+|..|.|++|.|..
T Consensus 22 rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD----H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 22 TLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD----FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp SCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT----TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred cEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC----CCceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 378899999999999999999999 99999998876 56799999999999999999999999999999974
No 382
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.35 E-value=0.0007 Score=61.61 Aligned_cols=93 Identities=17% Similarity=0.205 Sum_probs=74.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHHccCCcccccccc
Q 002280 462 PMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGSILK 541 (943)
Q Consensus 462 ~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~LnG~~l~Gr~Lk 541 (943)
...+|.|.|||+.+.++.|.-+|+.--. .|. .+|.++..-. +-|+|+|.+.+.|++.|+-....|.|.+|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rr-sGG------G~V~~v~~~~--~~AvItF~d~~va~rVL~k~~H~L~~~~Ls 77 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRR-SGG------GPVLSWQRLG--CGGVLTFREPADAERVLAQADHELHGAQLS 77 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTT-TCC------CCEEEEEEET--TEEEEEESSHHHHHHHHTCSCCBSSSSBCE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCc-CCC------ceeeEEEEcC--CcEEEEEcChHHHHHHhcCCcceecCeEEE
Confidence 4579999999999999999999976211 121 2666666544 789999999999999999878899999999
Q ss_pred ccCCccceeEEEEEecCCCCCC
Q 002280 542 IKRPKEFVEVAIFIGGISRTLS 563 (943)
Q Consensus 542 V~rp~d~~~~~LfV~NLp~~~t 563 (943)
|.......+.+|++.+|++.++
T Consensus 78 V~P~~~~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 78 LRPAPPRAPARLLLQGLPPGTS 99 (104)
T ss_dssp EEECCCCCCCCCCCCSCCCCCC
T ss_pred EEcCCCCCcceEeeecCCCCCC
Confidence 9865555556999999998775
No 383
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.31 E-value=0.00055 Score=62.85 Aligned_cols=76 Identities=16% Similarity=0.218 Sum_probs=63.4
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCccccccc
Q 002280 462 PMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSFSGSIL 540 (943)
Q Consensus 462 ~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr~L 540 (943)
..++|-+-|||-.++...|+.|++++..+. . ..++.+..-.+-+-|+|+|.+...|-+|.- |+|..|.|++|
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~------~-g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHIN------E-KDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCC------T-TTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccC------c-cceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 378999999999999999999999984211 1 155666667778889999999999999875 99999999999
Q ss_pred cccC
Q 002280 541 KIKR 544 (943)
Q Consensus 541 kV~r 544 (943)
++..
T Consensus 93 r~gT 96 (117)
T 2l9w_A 93 RSGT 96 (117)
T ss_dssp EEEC
T ss_pred EecC
Confidence 8863
No 384
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.17 E-value=0.025 Score=51.67 Aligned_cols=74 Identities=9% Similarity=0.063 Sum_probs=62.6
Q ss_pred eEEEEEecCCCCC-CH----HHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEE
Q 002280 550 EVAIFIGGISRTL-SS----KMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQ 624 (943)
Q Consensus 550 ~~~LfV~NLp~~~-te----edL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~ 624 (943)
+.+|+|.||+..+ .. +.++++|..|+++....+.+ +-.-+.|.|.++++|.+|-..|++..|.|..|+|.+
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lk----SFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YF 80 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFK----SFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYF 80 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEET----TTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEEC
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecC----cceEEEEEeCChHHHHHHHHHhccceecCceeEEEe
Confidence 3489999998744 22 56799999999998887766 445678999999999999999999999999999998
Q ss_pred ccc
Q 002280 625 AVL 627 (943)
Q Consensus 625 A~~ 627 (943)
+.+
T Consensus 81 gq~ 83 (104)
T 1wey_A 81 AQT 83 (104)
T ss_dssp CCC
T ss_pred cCC
Confidence 864
No 385
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=95.25 E-value=0.033 Score=50.16 Aligned_cols=53 Identities=11% Similarity=0.246 Sum_probs=45.2
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLN 611 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~Ln 611 (943)
.++| ++|..+...||.++|+.||.| .|.++.| ..|||.|.+++.|..|+..+.
T Consensus 18 Vf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD-----TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 18 VLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-----TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp EEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET-----TEEEEECSCHHHHHHHHHHHH
T ss_pred EEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC-----CeEEEEecCHHHHHHHHHhcc
Confidence 5566 999999999999999999965 4666655 589999999999999998763
No 386
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=95.25 E-value=0.024 Score=51.81 Aligned_cols=70 Identities=13% Similarity=0.038 Sum_probs=53.5
Q ss_pred CCCeEEEcCCCCCC-CH----HHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-ccCCcc
Q 002280 462 PMRRLCVENLPLSA-SE----KALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CDGCSF 535 (943)
Q Consensus 462 ~~rtLfVgNLP~~v-TE----edL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-LnG~~l 535 (943)
-+.+|+|.||+..+ +. +.+.++|..|. ++.....-+|-.-..|.|.++++|.+|-. |++..|
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~------------~~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~f 71 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYD------------KDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEF 71 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTC------------SSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhC------------cCcceeecCcceEEEEEeCChHHHHHHHHHhcccee
Confidence 35789999999865 43 45667776665 33444445566668899999999999998 999999
Q ss_pred cccccccc
Q 002280 536 SGSILKIK 543 (943)
Q Consensus 536 ~Gr~LkV~ 543 (943)
.|+.|+|-
T Consensus 72 ~g~~~r~Y 79 (104)
T 1wey_A 72 LGKEMKLY 79 (104)
T ss_dssp TTEECEEE
T ss_pred cCceeEEE
Confidence 99988654
No 387
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.75 E-value=0.13 Score=46.78 Aligned_cols=69 Identities=12% Similarity=0.156 Sum_probs=56.7
Q ss_pred EEEEecCCCCCCHHHHHHHHhh-----cCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCCeEEEEEEcc
Q 002280 552 AIFIGGISRTLSSKMVMEIVCA-----FGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGGQVLTAVQAV 626 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~-----fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~gr~L~V~~A~ 626 (943)
+|.|.|||..+.++.|.-+|+. -|.|..+.... +-|+|+|.+...|++.|+. ..+.|.+..|.|....
T Consensus 10 ~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~------~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P~~ 82 (104)
T 2dhx_A 10 AVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG------CGGVLTFREPADAERVLAQ-ADHELHGAQLSLRPAP 82 (104)
T ss_dssp EEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET------TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEECC
T ss_pred EEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC------CcEEEEEcChHHHHHHhcC-CcceecCeEEEEEcCC
Confidence 8999999999999999999987 36888876532 6899999999999988863 3567888889997654
Q ss_pred c
Q 002280 627 L 627 (943)
Q Consensus 627 ~ 627 (943)
+
T Consensus 83 ~ 83 (104)
T 2dhx_A 83 P 83 (104)
T ss_dssp C
T ss_pred C
Confidence 4
No 388
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=94.46 E-value=0.14 Score=47.93 Aligned_cols=69 Identities=13% Similarity=0.235 Sum_probs=56.5
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhCCCccCC-eEEEEEEcc
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLNGLKVGG-QVLTAVQAV 626 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~LnG~~~~g-r~L~V~~A~ 626 (943)
.|.|-++|+.. -..|...|++||.|..... ..+..+..|.|.+..+|.+||. .||..|+| ..|-|.+..
T Consensus 26 wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~----~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 26 WVTVFGFPQAS-ASYILLQFAQYGNILKHVM----SNTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp EEEEECCCGGG-HHHHHHHHHTTSCEEEEEE----CSSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEECC
T ss_pred EEEEECCCHHH-HHHHHHHHHhhCcEEEecc----CCCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEECC
Confidence 67788888874 5678889999999988765 2356799999999999999997 79999975 677777653
No 389
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=94.44 E-value=0.14 Score=45.83 Aligned_cols=65 Identities=17% Similarity=0.168 Sum_probs=54.0
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecC---C-CCCCEEEEeecChhHHHHHHHHhCCCccC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE---D-HEEPCAFIEYVDQLVTPKAIAGLNGLKVG 616 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~---~-~skG~aFVeF~~~e~A~kAl~~LnG~~~~ 616 (943)
+|.|.+||+.+|++++.+.++.+..+.....+... + ..-.-|||.|.+.+++..-...++|..|-
T Consensus 3 KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 3 KVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp EEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred EEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 68999999999999999999999877766665442 1 22468999999999999999999998873
No 390
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=94.11 E-value=0.082 Score=47.74 Aligned_cols=53 Identities=11% Similarity=0.244 Sum_probs=45.2
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLN 611 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~Ln 611 (943)
.++| ++|..+...||.++|+.||.| .|.++.| ..|||.|.+++.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidD-----TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-----TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEET-----TEEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcC-----CeEEEEecCHHHHHHHHHhcc
Confidence 4555 999999999999999999954 5666665 589999999999999999774
No 391
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=93.16 E-value=0.19 Score=47.09 Aligned_cols=63 Identities=16% Similarity=0.182 Sum_probs=50.3
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHHccCCccccc
Q 002280 463 MRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALCCDGCSFSGS 538 (943)
Q Consensus 463 ~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~LnG~~l~Gr 538 (943)
..-|.|-+.|+.. -..|...|++||. |++........+-.|.|.+..+|.+||..||..|.|.
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~------------Iv~~~~~~~~NWihI~Y~s~~~A~rAL~kNG~ii~g~ 86 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGN------------ILKHVMSNTGNWMHIRYQSKLQARKALSKDGRIFGES 86 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSC------------EEEEEECSSSSEEEEEESSHHHHHHHHTTTTCEETTT
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCc------------EEEeccCCCCCeEEEEeCCHHHHHHHHHhCCeEecCC
Confidence 4678999999985 6677888988884 3444444456789999999999999999999999753
No 392
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=90.85 E-value=0.18 Score=45.02 Aligned_cols=65 Identities=18% Similarity=0.270 Sum_probs=46.3
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeec------CCCeeeEEeCCHHHHHHHHH-ccCCccc
Q 002280 464 RRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQR------EKGQAFVEFLTAEDASAALC-CDGCSFS 536 (943)
Q Consensus 464 rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~------skGyAFVeF~s~edA~~Al~-LnG~~l~ 536 (943)
.+|.|.+||+.+||+++.+.+..+.... ...-.-|. .-.-|||.|.+.+++..... ++|..|.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d----------~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHD----------YFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEE----------EEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccce----------EEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 4799999999999999999986643110 01111111 12349999999999999988 9998775
Q ss_pred cc
Q 002280 537 GS 538 (943)
Q Consensus 537 Gr 538 (943)
+.
T Consensus 72 D~ 73 (91)
T 1uw4_A 72 DN 73 (91)
T ss_dssp CT
T ss_pred cC
Confidence 43
No 393
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=90.27 E-value=0.41 Score=45.42 Aligned_cols=74 Identities=19% Similarity=0.254 Sum_probs=54.6
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeE-EEEEec--------------CC-CCCCEEEEeecChhHHHHHHHHhCCCcc
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKA-YHFEVN--------------ED-HEEPCAFIEYVDQLVTPKAIAGLNGLKV 615 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~-v~l~~d--------------~~-~skG~aFVeF~~~e~A~kAl~~LnG~~~ 615 (943)
.|.|-+.|...+ ..|.+.|++||.|.. +.+... +. .+..+..|+|.+..+|.+||. .||..|
T Consensus 9 ~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ii 86 (132)
T 3p3d_A 9 AILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAVF 86 (132)
T ss_dssp EEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCEE
T ss_pred EEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeEe
Confidence 466777866554 467788999999865 211110 00 146788999999999999997 899999
Q ss_pred CCeEEEEEEccc
Q 002280 616 GGQVLTAVQAVL 627 (943)
Q Consensus 616 ~gr~L~V~~A~~ 627 (943)
+|..|-|.+..+
T Consensus 87 ~G~mIGV~Py~~ 98 (132)
T 3p3d_A 87 NGVLLGVIPYTK 98 (132)
T ss_dssp TTEECEEEECCH
T ss_pred CcEEEEEEECCH
Confidence 999888887644
No 394
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=89.71 E-value=0.18 Score=57.92 Aligned_cols=62 Identities=19% Similarity=0.230 Sum_probs=42.8
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCC-eeeEEeCCHHHHHHHHHccCCccc
Q 002280 462 PMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKG-QAFVEFLTAEDASAALCCDGCSFS 536 (943)
Q Consensus 462 ~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skG-yAFVeF~s~edA~~Al~LnG~~l~ 536 (943)
..|.|||. .|..+++.+|.++|++||. |.++....++| ||.|||.+.+++..++...++...
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~------------i~~~~~~~~~g~~~~vef~~~~~~~~~~~~~~~p~~ 114 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGP------------INNHFFYESFGLYAVVEFCQKESIGSLQNGTHTPXX 114 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSC------------CCCEEEECSSSEEEEEECC---CCHHHHSSCCCCCC
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCC------------cceEEEEccCCeEEEEEeCCHHHHHHHHhccCCCcc
Confidence 35899998 7999999999999999994 44455545555 899999999999988765444443
No 395
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=89.16 E-value=0.9 Score=40.89 Aligned_cols=53 Identities=21% Similarity=0.252 Sum_probs=41.6
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH
Q 002280 462 PMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC 529 (943)
Q Consensus 462 ~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~ 529 (943)
..+.++| ++|+.+.-.||.++|++|| |+ .|. +++ -.-|||.|.+++.|..||.
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fg---gv-------~I~--Wid--DTsAlvvf~~~~~a~~al~ 67 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFG---NI-------QIS--WID--DTSAFVSLSQPEQVQIAVN 67 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTC---SC-------CCE--EEE--TTEEEEECSCHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccC---CE-------EEE--EEc--CCeEEEEecCHHHHHHHHH
Confidence 3456777 9999999999999999997 22 111 111 4569999999999999998
No 396
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=88.94 E-value=0.37 Score=43.42 Aligned_cols=72 Identities=17% Similarity=0.195 Sum_probs=46.2
Q ss_pred CCCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeee-cCCCeeeEEeCCHHHHHHHHH-ccCCccccc
Q 002280 462 PMRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQ-REKGQAFVEFLTAEDASAALC-CDGCSFSGS 538 (943)
Q Consensus 462 ~~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~-~skGyAFVeF~s~edA~~Al~-LnG~~l~Gr 538 (943)
.+-+|.|..||+.+||+++.+.+..+-..--+.-+++. ...+ ..-.-|||.|.+.+++..... ++|..|.+.
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~-----~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~ 81 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAAD-----LSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDS 81 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCC-----SSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECT
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCc-----cCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeC
Confidence 45689999999999999987776542110000001110 0001 112359999999999999998 999877543
No 397
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=86.70 E-value=0.42 Score=54.95 Aligned_cols=53 Identities=15% Similarity=0.273 Sum_probs=40.1
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHH
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIA 608 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~ 608 (943)
.|||. .|..+++.+|.++|++||+|..+.+..+ ..-||.|+|.+.+++..++.
T Consensus 55 sv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~---~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 55 TVLIH-CPEKISENKFLKYLSQFGPINNHFFYES---FGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp EEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS---SSEEEEEECC---CCHHHHS
T ss_pred eEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc---CCeEEEEEeCCHHHHHHHHh
Confidence 89997 7999999999999999999999988765 23599999999999886654
No 398
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=85.35 E-value=0.53 Score=42.45 Aligned_cols=64 Identities=13% Similarity=0.134 Sum_probs=46.7
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecC---C-CCCCEEEEeecChhHHHHHHHHhCCCcc
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNE---D-HEEPCAFIEYVDQLVTPKAIAGLNGLKV 615 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~---~-~skG~aFVeF~~~e~A~kAl~~LnG~~~ 615 (943)
+|.|..||+.+|++++.+.++.+-.+.....+... + ..-.-|||.|.+.++...-...++|..|
T Consensus 11 KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F 78 (97)
T 2l08_A 11 MVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIF 78 (97)
T ss_dssp CEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEE
T ss_pred eEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEE
Confidence 78999999999999877776665443222221111 1 1235789999999999999999999887
No 399
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=81.84 E-value=0.93 Score=40.94 Aligned_cols=53 Identities=21% Similarity=0.291 Sum_probs=41.1
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-cc
Q 002280 464 RRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CD 531 (943)
Q Consensus 464 rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-Ln 531 (943)
+.++| ++|+.+.-.+|.++|++|| |+ .| .+++ -.-|||.|.+++.|..||. +.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg---gv-------~I--~Wid--DTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG---NI-------QI--SWID--DTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE---EE-------EE--EEEE--TTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC---CE-------EE--EEEc--CCeEEEEecCHHHHHHHHHhcc
Confidence 45666 9999999999999999997 22 11 1222 4569999999999999998 53
No 400
>1jmt_B Splicing factor U2AF 65 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens}
Probab=81.43 E-value=0.36 Score=33.29 Aligned_cols=17 Identities=24% Similarity=0.391 Sum_probs=14.6
Q ss_pred CCCCCCCCccccCCccc
Q 002280 391 AKWDVAPVETYSVPSNV 407 (943)
Q Consensus 391 ~~~di~P~~~~~v~~~~ 407 (943)
..||+||+||+.|+++.
T Consensus 6 ~~WDvpP~GyE~vtp~q 22 (28)
T 1jmt_B 6 KYWDVPPPGFEHITPMQ 22 (28)
T ss_dssp CCBTCCCTTCTTSCHHH
T ss_pred cccCCCCCCccccCHHH
Confidence 37999999999999843
No 401
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=80.19 E-value=1.7 Score=41.27 Aligned_cols=74 Identities=15% Similarity=0.134 Sum_probs=48.2
Q ss_pred CeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCccee----------eeeeecCCCeeeEEeCCHHHHHHHHHccCC
Q 002280 464 RRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCI----------GCVIQREKGQAFVEFLTAEDASAALCCDGC 533 (943)
Q Consensus 464 rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~----------~~~~~~skGyAFVeF~s~edA~~Al~LnG~ 533 (943)
.-|.|-+.|+..+ ..|...|++||.++. .+....... ..-.....+...|.|.+..+|.+||..||.
T Consensus 8 ~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE--~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~NG~ 84 (132)
T 3p3d_A 8 LAILVFGYPETMA-NQVIAYFQEFGTILE--DFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLENGA 84 (132)
T ss_dssp CEEEEECCCGGGH-HHHHHHHGGGSCBCS--CCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTTTTC
T ss_pred eEEEEEecCHHHH-HHHHHHHHhhceEee--eccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHhCCe
Confidence 4677888876655 467788999987543 111000000 000001345678999999999999999999
Q ss_pred ccccccc
Q 002280 534 SFSGSIL 540 (943)
Q Consensus 534 ~l~Gr~L 540 (943)
.|.|.-|
T Consensus 85 ii~G~mI 91 (132)
T 3p3d_A 85 VFNGVLL 91 (132)
T ss_dssp EETTEEC
T ss_pred EeCcEEE
Confidence 9998644
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=57.29 E-value=17 Score=42.15 Aligned_cols=53 Identities=11% Similarity=0.249 Sum_probs=43.9
Q ss_pred EEEEecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCCEEEEeecChhHHHHHHHHhC
Q 002280 552 AIFIGGISRTLSSKMVMEIVCAFGPLKAYHFEVNEDHEEPCAFIEYVDQLVTPKAIAGLN 611 (943)
Q Consensus 552 ~LfV~NLp~~~teedL~e~Fs~fG~I~~v~l~~d~~~skG~aFVeF~~~e~A~kAl~~Ln 611 (943)
.++|+ +|..+...+|.++|+.||.+ .|.++. ...|||.|.+.+.|..++..++
T Consensus 442 vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wid-----dt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 442 VLHVT-FPKEWKTSDLYQLFSAFGNI-QISWID-----DTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp EEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECS-----SSEEEEECSCHHHHHHHHHHHT
T ss_pred EEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEc-----CCeEEEEECCHHHHHHHHHHHH
Confidence 56665 89999999999999999965 455443 4589999999999999999885
No 403
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=26.32 E-value=85 Score=36.31 Aligned_cols=54 Identities=19% Similarity=0.215 Sum_probs=41.4
Q ss_pred CCeEEEcCCCCCCCHHHHHHHHHhhhhccCcccccCCcceeeeeeecCCCeeeEEeCCHHHHHHHHH-cc
Q 002280 463 MRRLCVENLPLSASEKALMEFLNNFLLSSGVQHVHGSLPCIGCVIQREKGQAFVEFLTAEDASAALC-CD 531 (943)
Q Consensus 463 ~rtLfVgNLP~~vTEedL~elF~~~G~~~g~~~i~~~~~v~~~~~~~skGyAFVeF~s~edA~~Al~-Ln 531 (943)
.+.++|+ +|..+...+|.++|+.||. + .| .+ -+...|||.|.+.+.|..++. ++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~---v-------~V--~w--iddt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGN---I-------QI--SW--IDDTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCC---C-------EE--EE--CSSSEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCC---E-------EE--EE--EcCCeEEEEECCHHHHHHHHHHHH
Confidence 4577777 9999999999999998872 1 11 11 135569999999999999998 54
No 404
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=23.11 E-value=1.3e+02 Score=26.25 Aligned_cols=33 Identities=9% Similarity=0.056 Sum_probs=27.2
Q ss_pred eEEEEEecCCCCCcceeEEEEeCCHHHHHHHHHHhCC
Q 002280 694 VKSVNVVKYGDSNISTIQACEGNENTASAGVGQNLTN 730 (943)
Q Consensus 694 V~~V~I~r~~~g~~~G~~FVeF~~~e~A~~Ai~~LnG 730 (943)
|..|.+|.. .+||.||++...++...++..+.|
T Consensus 40 i~~v~vP~~----fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 40 VYSILASES----LKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp EEEEEECTT----STTEEEEEESSHHHHHHHHTTCTT
T ss_pred EEEEEEecc----cCCEEEEEEecchhHHHHHHCCCC
Confidence 778888863 689999999999988888877765
Done!