Query 002281
Match_columns 943
No_of_seqs 483 out of 2696
Neff 4.5
Searched_HMMs 46136
Date Thu Mar 28 20:34:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002281.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002281hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02727 NAD kinase 100.0 2E-235 3E-240 2038.5 69.0 905 7-934 1-922 (986)
2 KOG2178 Predicted sugar kinase 100.0 4.1E-60 8.8E-65 517.3 24.1 272 661-937 65-348 (409)
3 PLN02935 Bifunctional NADH kin 100.0 5.2E-57 1.1E-61 510.9 27.8 255 675-934 179-439 (508)
4 PRK14077 pnk inorganic polypho 100.0 7.4E-55 1.6E-59 470.1 28.2 234 689-940 9-245 (287)
5 PRK03372 ppnK inorganic polyph 100.0 1.7E-54 3.7E-59 470.7 29.2 239 687-934 2-244 (306)
6 PRK04539 ppnK inorganic polyph 100.0 3.4E-54 7.4E-59 466.7 26.6 234 687-934 2-240 (296)
7 PRK02649 ppnK inorganic polyph 100.0 1.5E-53 3.2E-58 463.3 28.0 234 691-933 2-239 (305)
8 PRK01911 ppnK inorganic polyph 100.0 2.1E-53 4.5E-58 459.8 28.4 231 692-933 2-234 (292)
9 PRK03378 ppnK inorganic polyph 100.0 3.9E-53 8.5E-58 457.7 28.5 232 688-934 3-235 (292)
10 PRK02155 ppnK NAD(+)/NADH kina 100.0 6.6E-52 1.4E-56 448.0 27.5 232 688-934 3-235 (291)
11 PRK02231 ppnK inorganic polyph 100.0 1E-51 2.2E-56 442.7 25.4 213 707-934 2-215 (272)
12 PRK01231 ppnK inorganic polyph 100.0 2.7E-51 5.8E-56 444.0 28.6 229 690-933 4-233 (295)
13 PRK01185 ppnK inorganic polyph 100.0 3.7E-51 8.1E-56 438.2 27.7 214 692-933 2-216 (271)
14 PRK14076 pnk inorganic polypho 100.0 6E-51 1.3E-55 474.8 28.8 241 684-940 284-530 (569)
15 COG0061 nadF NAD kinase [Coenz 100.0 5.8E-50 1.3E-54 430.8 28.4 223 691-933 1-224 (281)
16 PRK03501 ppnK inorganic polyph 100.0 7.8E-50 1.7E-54 426.6 26.7 204 691-934 3-213 (264)
17 PRK03708 ppnK inorganic polyph 100.0 1.8E-49 3.8E-54 426.6 28.3 221 692-934 2-224 (277)
18 PRK02645 ppnK inorganic polyph 100.0 2.1E-48 4.5E-53 423.3 26.4 226 690-933 3-237 (305)
19 PRK04885 ppnK inorganic polyph 100.0 3.3E-48 7.1E-53 414.4 25.5 201 692-933 2-211 (265)
20 PF01513 NAD_kinase: ATP-NAD k 100.0 3.4E-48 7.4E-53 416.8 22.1 236 692-933 1-249 (285)
21 PRK00561 ppnK inorganic polyph 100.0 6.3E-47 1.4E-51 403.0 25.6 193 692-933 2-200 (259)
22 PRK14075 pnk inorganic polypho 100.0 7.8E-47 1.7E-51 402.0 26.0 210 692-940 2-214 (256)
23 PRK04761 ppnK inorganic polyph 100.0 1.2E-44 2.7E-49 383.0 21.4 167 754-933 24-193 (246)
24 PLN02929 NADH kinase 100.0 2.5E-43 5.5E-48 381.6 23.6 204 704-939 33-269 (301)
25 PF13350 Y_phosphatase3: Tyros 99.9 1E-22 2.2E-27 202.6 12.7 132 247-387 1-164 (164)
26 PF03162 Y_phosphatase2: Tyros 99.8 2.9E-20 6.3E-25 187.0 11.9 122 245-385 4-129 (164)
27 TIGR01244 conserved hypothetic 99.8 1.8E-19 4E-24 175.4 14.4 113 267-383 7-121 (135)
28 KOG4180 Predicted kinase [Gene 99.7 3.4E-18 7.4E-23 184.4 6.9 136 753-893 103-277 (395)
29 PF04273 DUF442: Putative phos 99.7 1.8E-17 4E-22 157.1 10.7 100 267-370 7-108 (110)
30 COG3453 Uncharacterized protei 99.6 3.3E-15 7.2E-20 142.6 12.4 111 267-381 8-120 (130)
31 COG2365 Protein tyrosine/serin 99.5 5.2E-14 1.1E-18 150.4 7.6 157 266-423 52-236 (249)
32 smart00195 DSPc Dual specifici 99.5 2.6E-13 5.7E-18 130.3 11.6 107 267-384 6-116 (138)
33 KOG1572 Predicted protein tyro 99.5 3.4E-13 7.5E-18 141.7 12.1 123 244-385 56-186 (249)
34 cd00127 DSPc Dual specificity 99.4 1.1E-12 2.5E-17 125.0 11.4 109 267-384 7-119 (139)
35 PTZ00393 protein tyrosine phos 99.2 4.7E-11 1E-15 126.9 12.4 105 277-389 106-212 (241)
36 PTZ00242 protein tyrosine phos 99.2 1.1E-10 2.3E-15 118.1 13.4 112 268-387 17-139 (166)
37 PF00782 DSPc: Dual specificit 99.2 2.4E-11 5.1E-16 115.7 6.4 107 269-384 1-111 (133)
38 PF05706 CDKN3: Cyclin-depende 99.2 7.4E-11 1.6E-15 119.4 8.4 103 277-380 61-168 (168)
39 PRK12361 hypothetical protein; 99.1 7.8E-10 1.7E-14 129.9 14.2 118 267-391 100-221 (547)
40 KOG1720 Protein tyrosine phosp 98.7 4.8E-08 1E-12 101.9 9.4 94 280-381 87-182 (225)
41 PF14566 PTPlike_phytase: Inos 98.3 1.7E-06 3.8E-11 86.2 7.5 61 308-368 84-145 (149)
42 TIGR00147 lipid kinase, YegS/R 98.2 2.8E-06 6.1E-11 92.1 7.5 109 691-812 2-118 (293)
43 KOG2836 Protein tyrosine phosp 98.1 1.6E-05 3.5E-10 78.5 10.2 103 271-381 21-131 (173)
44 COG2453 CDC14 Predicted protei 98.1 1.3E-05 2.8E-10 82.1 9.7 77 312-388 68-148 (180)
45 KOG1719 Dual specificity phosp 98.1 1.8E-05 3.9E-10 79.8 9.3 99 278-381 42-144 (183)
46 KOG1716 Dual specificity phosp 97.9 5.2E-05 1.1E-09 83.1 10.4 116 266-390 79-199 (285)
47 smart00404 PTPc_motif Protein 97.7 5.1E-05 1.1E-09 68.2 5.4 52 319-370 5-62 (105)
48 smart00012 PTPc_DSPc Protein t 97.7 5.1E-05 1.1E-09 68.2 5.4 52 319-370 5-62 (105)
49 KOG1717 Dual specificity phosp 97.6 0.00021 4.5E-09 77.5 9.0 105 267-380 177-285 (343)
50 KOG1718 Dual specificity phosp 97.5 0.00051 1.1E-08 70.4 10.3 102 267-379 22-127 (198)
51 cd00047 PTPc Protein tyrosine 96.7 0.0026 5.6E-08 66.7 6.4 50 333-382 148-207 (231)
52 smart00194 PTPc Protein tyrosi 96.5 0.0055 1.2E-07 65.5 7.3 52 331-382 174-234 (258)
53 PRK13057 putative lipid kinase 96.2 0.012 2.7E-07 64.1 7.9 60 753-812 48-109 (287)
54 KOG2283 Clathrin coat dissocia 96.2 0.0059 1.3E-07 71.1 5.6 97 281-387 45-149 (434)
55 PRK00861 putative lipid kinase 96.2 0.032 6.9E-07 61.2 10.8 107 691-812 3-116 (300)
56 PRK11914 diacylglycerol kinase 96.0 0.038 8.2E-07 60.9 10.3 109 690-812 8-124 (306)
57 COG5599 PTP2 Protein tyrosine 96.0 0.0052 1.1E-07 67.0 3.4 40 329-368 198-239 (302)
58 PHA02740 protein tyrosine phos 95.7 0.019 4.1E-07 63.9 6.4 23 346-368 220-242 (298)
59 PHA02742 protein tyrosine phos 95.5 0.021 4.6E-07 63.4 5.8 22 347-368 229-250 (303)
60 PHA02747 protein tyrosine phos 95.0 0.026 5.6E-07 63.0 4.7 21 348-368 230-250 (312)
61 COG3199 Predicted inorganic po 94.9 0.043 9.3E-07 62.0 6.2 60 754-814 99-160 (355)
62 PLN02727 NAD kinase 94.9 0.029 6.3E-07 70.0 5.2 81 523-610 533-614 (986)
63 COG5350 Predicted protein tyro 94.8 0.043 9.4E-07 55.9 5.2 83 281-367 26-113 (172)
64 PRK13054 lipid kinase; Reviewe 94.7 0.12 2.6E-06 56.9 9.0 107 690-812 3-119 (300)
65 PRK15375 pathogenicity island 94.7 0.094 2E-06 62.1 8.4 55 331-386 439-507 (535)
66 PF00102 Y_phosphatase: Protei 94.7 0.035 7.6E-07 57.2 4.6 39 332-370 152-193 (235)
67 PHA02746 protein tyrosine phos 94.6 0.04 8.7E-07 61.9 4.8 21 348-368 248-268 (323)
68 PRK13059 putative lipid kinase 94.5 0.22 4.8E-06 54.9 10.3 108 691-812 2-117 (295)
69 PHA02738 hypothetical protein; 94.4 0.047 1E-06 61.2 4.9 22 347-368 227-248 (320)
70 PLN02160 thiosulfate sulfurtra 94.0 0.24 5.2E-06 48.9 8.4 86 275-374 17-106 (136)
71 TIGR03702 lip_kinase_YegS lipi 93.8 0.25 5.4E-06 54.3 9.0 59 754-812 51-115 (293)
72 PRK13337 putative lipid kinase 93.7 0.36 7.8E-06 53.4 10.0 106 691-812 2-118 (304)
73 PRK13055 putative lipid kinase 93.7 0.44 9.6E-06 53.6 10.8 106 691-812 3-121 (334)
74 KOG0792 Protein tyrosine phosp 93.6 0.054 1.2E-06 68.0 3.6 36 332-367 1045-1083(1144)
75 cd01523 RHOD_Lact_B Member of 93.3 0.27 5.8E-06 45.0 6.9 86 275-375 1-87 (100)
76 PRK12361 hypothetical protein; 93.1 0.32 7E-06 58.2 9.0 108 690-812 242-360 (547)
77 cd01533 4RHOD_Repeat_2 Member 92.7 0.46 1E-05 44.3 7.7 81 274-375 11-92 (109)
78 cd01518 RHOD_YceA Member of th 92.3 0.49 1.1E-05 43.4 7.3 85 274-375 3-87 (101)
79 KOG2386 mRNA capping enzyme, g 92.2 0.16 3.5E-06 58.7 4.7 103 275-383 48-161 (393)
80 PLN02958 diacylglycerol kinase 91.8 0.93 2E-05 53.9 10.5 114 684-813 105-239 (481)
81 KOG0791 Protein tyrosine phosp 91.8 0.2 4.4E-06 57.1 4.8 46 325-370 261-310 (374)
82 PF00781 DAGK_cat: Diacylglyce 91.5 0.19 4.1E-06 48.6 3.7 36 756-791 55-94 (130)
83 PLN02204 diacylglycerol kinase 91.3 0.77 1.7E-05 55.8 9.2 109 650-773 106-236 (601)
84 KOG0789 Protein tyrosine phosp 91.0 0.31 6.8E-06 55.3 5.3 23 346-368 298-320 (415)
85 cd01448 TST_Repeat_1 Thiosulfa 90.9 1 2.2E-05 42.6 8.0 96 275-375 2-106 (122)
86 PRK01415 hypothetical protein; 90.9 1.6 3.4E-05 47.9 10.4 167 181-370 15-193 (247)
87 KOG0790 Protein tyrosine phosp 90.9 0.25 5.5E-06 57.4 4.5 31 332-362 431-466 (600)
88 COG1597 LCB5 Sphingosine kinas 90.6 1.5 3.3E-05 49.0 10.2 59 754-812 57-119 (301)
89 smart00046 DAGKc Diacylglycero 90.1 0.33 7.2E-06 47.0 4.0 35 755-789 49-88 (124)
90 PRK05320 rhodanese superfamily 87.7 1.2 2.6E-05 48.9 6.7 174 181-374 13-200 (257)
91 COG0607 PspE Rhodanese-related 87.3 1.6 3.6E-05 39.8 6.4 76 277-373 9-85 (110)
92 cd01528 RHOD_2 Member of the R 87.3 2.4 5.3E-05 38.8 7.5 81 274-375 1-84 (101)
93 cd01519 RHOD_HSP67B2 Member of 87.2 2 4.3E-05 39.4 6.8 87 276-375 2-92 (106)
94 KOG0793 Protein tyrosine phosp 85.8 1.1 2.3E-05 54.8 5.3 32 332-363 909-943 (1004)
95 cd01444 GlpE_ST GlpE sulfurtra 85.7 3.7 7.9E-05 36.8 7.6 79 275-374 2-81 (96)
96 cd01534 4RHOD_Repeat_3 Member 85.7 3.7 8.1E-05 37.3 7.7 78 276-374 2-81 (95)
97 cd01449 TST_Repeat_2 Thiosulfa 85.5 2 4.4E-05 40.1 6.1 95 276-375 2-104 (118)
98 cd01527 RHOD_YgaP Member of th 84.4 1.9 4.1E-05 39.3 5.2 74 274-370 3-76 (99)
99 PF00581 Rhodanese: Rhodanese- 84.0 4.3 9.4E-05 36.8 7.4 80 276-367 1-86 (113)
100 cd01522 RHOD_1 Member of the R 83.7 6.6 0.00014 37.5 8.8 86 275-374 1-89 (117)
101 PRK00142 putative rhodanese-re 83.6 3 6.4E-05 47.1 7.4 83 271-374 110-196 (314)
102 cd01524 RHOD_Pyr_redox Member 81.4 5.2 0.00011 36.0 6.8 75 276-374 2-76 (90)
103 PRK14071 6-phosphofructokinase 81.1 1.4 2.9E-05 50.8 3.5 54 755-810 107-170 (360)
104 TIGR02483 PFK_mixed phosphofru 80.4 1.3 2.8E-05 50.2 3.1 54 754-810 93-156 (324)
105 cd01520 RHOD_YbbB Member of th 79.9 7.2 0.00016 37.7 7.6 28 345-374 84-112 (128)
106 cd01526 RHOD_ThiF Member of th 79.8 4.1 9E-05 38.9 5.9 86 274-374 9-97 (122)
107 KOG1530 Rhodanese-related sulf 79.8 4.8 0.0001 40.6 6.3 81 276-369 26-110 (136)
108 KOG4228 Protein tyrosine phosp 79.6 2.5 5.5E-05 54.1 5.4 31 333-363 713-746 (1087)
109 cd01530 Cdc25 Cdc25 phosphatas 79.2 8.3 0.00018 37.2 7.8 25 345-370 66-91 (121)
110 TIGR02482 PFKA_ATP 6-phosphofr 78.1 1.8 3.9E-05 48.7 3.2 54 754-809 90-153 (301)
111 KOG4471 Phosphatidylinositol 3 77.7 2.9 6.3E-05 50.6 4.8 25 344-368 371-395 (717)
112 PRK10287 thiosulfate:cyanide s 76.7 5.7 0.00012 37.9 5.7 66 288-374 20-85 (104)
113 PRK06555 pyrophosphate--fructo 76.3 2.3 5E-05 49.7 3.5 54 754-809 111-179 (403)
114 PF13348 Y_phosphatase3C: Tyro 76.0 1.3 2.8E-05 38.5 1.1 26 398-423 27-52 (68)
115 PF06602 Myotub-related: Myotu 75.5 3.6 7.8E-05 47.2 4.8 31 339-370 224-254 (353)
116 PRK00162 glpE thiosulfate sulf 75.4 8.7 0.00019 35.7 6.5 78 275-375 7-84 (108)
117 TIGR02981 phageshock_pspE phag 75.0 8.8 0.00019 36.3 6.5 71 283-374 13-83 (101)
118 cd00763 Bacterial_PFK Phosphof 74.9 2.8 6E-05 47.5 3.6 52 754-808 91-152 (317)
119 cd08194 Fe-ADH6 Iron-containin 74.6 5.2 0.00011 45.8 5.7 88 690-787 23-130 (375)
120 PTZ00286 6-phospho-1-fructokin 74.2 2.8 6E-05 49.8 3.5 53 754-808 175-242 (459)
121 PRK14072 6-phosphofructokinase 74.1 2.7 5.8E-05 49.3 3.4 53 754-808 102-169 (416)
122 COG0205 PfkA 6-phosphofructoki 72.0 3.3 7.1E-05 47.6 3.4 44 754-797 93-146 (347)
123 PRK06830 diphosphate--fructose 71.7 3.4 7.3E-05 48.9 3.5 44 754-797 171-229 (443)
124 PRK05600 thiamine biosynthesis 71.4 8.7 0.00019 44.4 6.6 85 274-374 272-357 (370)
125 cd08176 LPO Lactadehyde:propan 70.8 6 0.00013 45.3 5.2 87 691-787 29-135 (377)
126 cd08193 HVD 5-hydroxyvalerate 70.7 5.9 0.00013 45.3 5.1 88 690-787 26-133 (376)
127 PLN02564 6-phosphofructokinase 70.7 3.7 8E-05 49.1 3.5 53 754-808 175-242 (484)
128 PRK06895 putative anthranilate 69.4 13 0.00028 38.6 6.8 75 691-789 2-82 (190)
129 COG1454 EutG Alcohol dehydroge 69.4 5.5 0.00012 46.3 4.5 77 689-775 28-105 (377)
130 PRK09860 putative alcohol dehy 69.4 6.7 0.00014 45.2 5.1 76 690-775 31-107 (383)
131 TIGR00566 trpG_papA glutamine 68.6 9.3 0.0002 39.7 5.5 75 693-789 2-82 (188)
132 cd01521 RHOD_PspE2 Member of t 67.7 13 0.00029 34.8 5.9 81 272-374 7-91 (110)
133 PLN02884 6-phosphofructokinase 67.4 4 8.6E-05 47.9 2.8 124 683-809 46-210 (411)
134 cd08169 DHQ-like Dehydroquinat 66.8 12 0.00025 42.8 6.3 92 690-787 23-117 (344)
135 KOG4435 Predicted lipid kinase 66.6 18 0.00039 42.5 7.6 86 754-850 115-213 (535)
136 PF00365 PFK: Phosphofructokin 66.4 2.5 5.4E-05 47.0 0.9 53 754-808 91-153 (282)
137 PRK03202 6-phosphofructokinase 65.3 5.6 0.00012 45.2 3.4 52 754-808 92-153 (320)
138 PRK07765 para-aminobenzoate sy 65.3 12 0.00026 39.9 5.7 79 692-789 2-86 (214)
139 cd01525 RHOD_Kc Member of the 65.2 17 0.00036 33.3 6.0 27 347-375 65-91 (105)
140 cd08185 Fe-ADH1 Iron-containin 64.8 12 0.00025 43.0 5.9 75 691-775 26-102 (380)
141 PRK06774 para-aminobenzoate sy 63.8 11 0.00025 38.9 5.1 74 693-789 2-82 (191)
142 cd08181 PPD-like 1,3-propanedi 63.3 11 0.00024 42.9 5.4 87 691-787 26-132 (357)
143 cd01529 4RHOD_Repeats Member o 63.0 13 0.00029 33.6 4.9 29 345-375 54-82 (96)
144 cd00363 PFK Phosphofructokinas 62.9 5.2 0.00011 45.7 2.6 55 754-810 91-160 (338)
145 smart00450 RHOD Rhodanese Homo 62.3 38 0.00082 29.5 7.5 29 345-375 54-82 (100)
146 TIGR03865 PQQ_CXXCW PQQ-depend 61.8 54 0.0012 33.6 9.4 99 274-375 37-143 (162)
147 cd08175 G1PDH Glycerol-1-phosp 61.8 14 0.00031 41.8 5.8 89 690-787 23-112 (348)
148 cd08178 AAD_C C-terminal alcoh 61.4 8.7 0.00019 44.4 4.1 76 690-775 21-97 (398)
149 PRK10624 L-1,2-propanediol oxi 61.3 12 0.00026 43.0 5.2 74 691-774 31-105 (382)
150 TIGR01357 aroB 3-dehydroquinat 61.2 16 0.00034 41.3 6.1 32 755-787 81-115 (344)
151 cd08179 NADPH_BDH NADPH-depend 61.0 12 0.00027 42.8 5.2 75 691-775 24-100 (375)
152 PRK11784 tRNA 2-selenouridine 60.9 33 0.00072 39.5 8.6 27 346-374 87-114 (345)
153 cd08192 Fe-ADH7 Iron-containin 60.6 8.2 0.00018 44.0 3.7 76 690-775 24-100 (370)
154 cd07766 DHQ_Fe-ADH Dehydroquin 60.4 12 0.00026 41.8 4.9 86 690-787 23-112 (332)
155 cd08170 GlyDH Glycerol dehydro 60.4 19 0.00042 40.7 6.6 86 690-787 22-109 (351)
156 cd08171 GlyDH-like2 Glycerol d 60.1 16 0.00036 41.3 5.9 96 691-796 23-121 (345)
157 cd08551 Fe-ADH iron-containing 59.5 11 0.00023 43.0 4.4 76 690-775 23-99 (370)
158 cd08187 BDH Butanol dehydrogen 59.2 14 0.0003 42.5 5.2 88 690-787 28-136 (382)
159 TIGR02638 lactal_redase lactal 59.1 14 0.00029 42.6 5.1 75 690-774 29-104 (379)
160 TIGR02477 PFKA_PPi diphosphate 58.8 8.6 0.00019 46.7 3.6 44 754-797 160-220 (539)
161 PRK00002 aroB 3-dehydroquinate 58.4 20 0.00044 40.8 6.3 91 690-787 31-126 (358)
162 PLN02251 pyrophosphate-depende 58.3 8.8 0.00019 46.9 3.5 43 754-796 189-248 (568)
163 cd08177 MAR Maleylacetate redu 57.6 14 0.00031 41.7 4.9 85 690-787 23-109 (337)
164 cd08173 Gro1PDH Sn-glycerol-1- 57.5 45 0.00098 37.7 8.8 83 691-787 26-110 (339)
165 PF04343 DUF488: Protein of un 57.5 16 0.00034 35.4 4.5 46 280-325 6-53 (122)
166 cd01447 Polysulfide_ST Polysul 57.5 35 0.00076 30.8 6.6 27 346-374 60-86 (103)
167 PRK07085 diphosphate--fructose 57.1 9.5 0.00021 46.5 3.6 31 755-785 164-199 (555)
168 cd08186 Fe-ADH8 Iron-containin 56.8 15 0.00033 42.3 5.0 76 690-775 26-103 (383)
169 PLN03028 pyrophosphate--fructo 56.1 10 0.00022 46.8 3.6 32 754-785 172-208 (610)
170 PF04179 Init_tRNA_PT: Initiat 55.9 36 0.00079 40.7 8.0 76 286-370 317-400 (451)
171 PRK07411 hypothetical protein; 55.9 23 0.00049 41.2 6.2 83 274-374 283-367 (390)
172 PRK05670 anthranilate synthase 55.7 23 0.0005 36.6 5.7 75 693-789 2-82 (189)
173 cd08189 Fe-ADH5 Iron-containin 55.7 19 0.00041 41.3 5.6 76 690-775 26-102 (374)
174 cd08195 DHQS Dehydroquinate sy 55.4 22 0.00048 40.3 5.9 91 690-787 24-119 (345)
175 PLN02834 3-dehydroquinate synt 55.3 17 0.00036 43.0 5.1 91 690-787 100-197 (433)
176 KOG1089 Myotubularin-related p 55.3 19 0.00041 43.9 5.6 29 345-373 342-370 (573)
177 cd00765 Pyrophosphate_PFK Phos 54.8 11 0.00023 46.0 3.5 44 754-797 165-225 (550)
178 PRK06186 hypothetical protein; 54.7 27 0.00059 38.2 6.2 36 753-788 51-91 (229)
179 cd08182 HEPD Hydroxyethylphosp 54.4 19 0.00041 41.1 5.2 73 690-775 23-96 (367)
180 PRK08762 molybdopterin biosynt 54.2 34 0.00074 39.4 7.3 78 275-374 5-82 (376)
181 PRK15454 ethanol dehydrogenase 54.1 14 0.0003 43.0 4.1 76 690-775 49-125 (395)
182 PLN02723 3-mercaptopyruvate su 53.9 31 0.00068 38.9 6.8 43 330-374 252-294 (320)
183 PTZ00468 phosphofructokinase f 53.6 10 0.00023 49.9 3.3 44 754-797 799-864 (1328)
184 cd08183 Fe-ADH2 Iron-containin 53.4 23 0.0005 40.6 5.7 71 691-775 23-94 (374)
185 TIGR02478 6PF1K_euk 6-phosphof 53.0 11 0.00025 47.4 3.4 54 754-809 477-546 (745)
186 cd08180 PDD 1,3-propanediol de 52.2 21 0.00045 40.3 5.1 87 690-787 22-117 (332)
187 cd00764 Eukaryotic_PFK Phospho 52.0 12 0.00027 47.1 3.5 53 754-808 477-545 (762)
188 PRK07878 molybdopterin biosynt 50.9 42 0.00091 39.0 7.4 80 274-374 288-368 (392)
189 cd08190 HOT Hydroxyacid-oxoaci 50.3 17 0.00036 42.5 4.1 75 691-775 24-99 (414)
190 cd08549 G1PDH_related Glycerol 50.2 27 0.0006 39.4 5.6 86 691-787 25-112 (332)
191 PRK09423 gldA glycerol dehydro 50.1 27 0.00059 39.9 5.6 85 691-787 30-116 (366)
192 cd01443 Cdc25_Acr2p Cdc25 enzy 50.0 64 0.0014 30.3 7.2 75 275-365 4-84 (113)
193 KOG1115 Ceramide kinase [Lipid 50.0 15 0.00033 43.2 3.5 73 687-772 155-234 (516)
194 PRK06490 glutamine amidotransf 49.9 31 0.00067 37.5 5.8 79 691-789 8-96 (239)
195 COG1819 Glycosyl transferases, 49.5 79 0.0017 37.0 9.3 60 749-812 294-369 (406)
196 PRK11493 sseA 3-mercaptopyruva 49.3 31 0.00068 37.9 5.8 43 331-375 215-257 (281)
197 PRK11493 sseA 3-mercaptopyruva 48.8 67 0.0015 35.4 8.2 82 275-358 7-98 (281)
198 cd08172 GlyDH-like1 Glycerol d 48.1 27 0.00058 39.6 5.2 83 691-787 24-108 (347)
199 cd01743 GATase1_Anthranilate_S 47.9 15 0.00032 37.7 2.8 36 754-789 41-81 (184)
200 cd08191 HHD 6-hydroxyhexanoate 47.6 27 0.00058 40.3 5.1 75 691-775 23-98 (386)
201 cd01532 4RHOD_Repeat_1 Member 47.3 50 0.0011 29.9 5.9 15 346-361 49-63 (92)
202 PRK08857 para-aminobenzoate sy 46.6 40 0.00086 35.1 5.7 34 755-789 43-82 (193)
203 PRK06203 aroB 3-dehydroquinate 46.3 39 0.00085 39.4 6.2 33 754-787 110-145 (389)
204 PF05925 IpgD: Enterobacterial 46.1 6.7 0.00015 47.1 0.0 23 346-368 452-474 (559)
205 TIGR03405 Phn_Fe-ADH phosphona 46.0 29 0.00063 39.6 5.1 76 691-775 24-99 (355)
206 PRK01269 tRNA s(4)U8 sulfurtra 45.7 37 0.00079 40.6 6.0 67 289-374 408-474 (482)
207 PF02126 PTE: Phosphotriestera 45.6 32 0.0007 39.0 5.2 42 278-321 42-83 (308)
208 COG1054 Predicted sulfurtransf 45.4 73 0.0016 36.4 7.8 112 271-435 111-233 (308)
209 PF13685 Fe-ADH_2: Iron-contai 44.7 63 0.0014 35.7 7.2 89 689-795 18-117 (250)
210 TIGR03167 tRNA_sel_U_synt tRNA 44.5 49 0.0011 37.6 6.5 24 349-374 76-100 (311)
211 cd01531 Acr2p Eukaryotic arsen 44.2 78 0.0017 29.7 6.9 78 275-368 4-83 (113)
212 PRK15378 inositol phosphate ph 43.9 14 0.00031 44.1 2.1 18 351-368 460-477 (564)
213 TIGR02478 6PF1K_euk 6-phosphof 43.7 18 0.00039 45.7 3.1 54 754-809 93-178 (745)
214 PRK00843 egsA NAD(P)-dependent 43.6 74 0.0016 36.3 7.8 32 755-787 87-119 (350)
215 PRK09629 bifunctional thiosulf 43.2 83 0.0018 39.0 8.6 44 330-375 206-249 (610)
216 PRK07053 glutamine amidotransf 42.8 54 0.0012 35.5 6.2 80 690-789 2-93 (234)
217 cd00158 RHOD Rhodanese Homolog 42.7 63 0.0014 27.8 5.6 25 345-370 48-72 (89)
218 TIGR01815 TrpE-clade3 anthrani 42.5 52 0.0011 41.6 6.8 78 690-789 516-598 (717)
219 cd08199 EEVS 2-epi-5-epi-valio 42.1 50 0.0011 38.0 6.1 93 688-787 24-122 (354)
220 cd08197 DOIS 2-deoxy-scyllo-in 42.1 44 0.00096 38.5 5.7 87 690-787 23-118 (355)
221 TIGR00337 PyrG CTP synthase. C 41.3 57 0.0012 39.8 6.6 85 690-788 289-381 (525)
222 CHL00101 trpG anthranilate syn 41.3 22 0.00048 37.0 2.9 35 755-789 43-82 (190)
223 PRK07649 para-aminobenzoate/an 41.0 42 0.00092 35.3 5.0 74 693-789 2-82 (195)
224 PLN02335 anthranilate synthase 40.7 61 0.0013 34.9 6.2 78 689-789 17-101 (222)
225 PTZ00468 phosphofructokinase f 40.7 23 0.0005 47.0 3.5 43 754-796 195-254 (1328)
226 PTZ00287 6-phosphofructokinase 39.8 22 0.00047 47.5 3.1 53 755-809 928-997 (1419)
227 PF00465 Fe-ADH: Iron-containi 39.6 19 0.00042 40.9 2.4 76 691-775 22-97 (366)
228 PF06283 ThuA: Trehalose utili 39.4 96 0.0021 32.6 7.3 98 692-813 1-109 (217)
229 PRK13566 anthranilate synthase 39.1 86 0.0019 39.7 8.0 78 689-789 525-608 (720)
230 PRK13805 bifunctional acetalde 38.5 44 0.00095 42.8 5.4 78 689-775 479-558 (862)
231 COG2897 SseA Rhodanese-related 38.4 82 0.0018 35.6 6.9 94 275-371 158-257 (285)
232 cd00764 Eukaryotic_PFK Phospho 38.1 26 0.00057 44.4 3.3 44 754-797 96-171 (762)
233 cd08188 Fe-ADH4 Iron-containin 38.1 32 0.0007 39.5 3.9 76 690-775 28-104 (377)
234 cd03174 DRE_TIM_metallolyase D 37.0 1.9E+02 0.0041 30.9 9.2 80 278-358 119-201 (265)
235 cd03132 GATase1_catalase Type 35.7 1.4E+02 0.0031 29.0 7.4 35 755-789 62-105 (142)
236 KOG4228 Protein tyrosine phosp 34.4 33 0.0007 44.7 3.3 93 113-208 680-798 (1087)
237 KOG1116 Sphingosine kinase, in 34.1 92 0.002 38.4 6.8 73 688-775 177-256 (579)
238 COG2012 RPB5 DNA-directed RNA 33.7 11 0.00023 35.0 -0.7 18 77-94 36-63 (80)
239 PRK11574 oxidative-stress-resi 33.4 1.3E+02 0.0029 30.9 7.2 38 754-791 65-111 (196)
240 cd07944 DRE_TIM_HOA_like 4-hyd 32.7 1.2E+02 0.0027 33.4 7.2 79 279-358 114-194 (266)
241 PF08357 SEFIR: SEFIR domain; 32.6 52 0.0011 32.4 3.9 77 691-775 1-78 (150)
242 PF13528 Glyco_trans_1_3: Glyc 31.8 1E+02 0.0022 33.5 6.3 36 748-787 243-278 (318)
243 PF07899 Frigida: Frigida-like 30.8 55 0.0012 37.0 4.1 103 94-227 148-250 (290)
244 PRK10310 PTS system galactitol 30.6 4.2E+02 0.0091 24.8 9.3 90 691-811 3-94 (94)
245 cd07943 DRE_TIM_HOA 4-hydroxy- 30.5 3E+02 0.0065 30.1 9.6 81 277-358 115-196 (263)
246 PRK05380 pyrG CTP synthetase; 30.4 1E+02 0.0023 37.7 6.5 37 752-788 340-381 (533)
247 cd03784 GT1_Gtf_like This fami 29.0 77 0.0017 35.8 4.9 59 748-810 297-371 (401)
248 TIGR01426 MGT glycosyltransfer 28.3 58 0.0013 36.9 3.8 34 750-787 286-319 (392)
249 TIGR03217 4OH_2_O_val_ald 4-hy 28.3 3.5E+02 0.0075 31.1 9.9 82 276-358 116-199 (333)
250 cd08196 DHQS-like1 Dehydroquin 28.0 1E+02 0.0022 35.5 5.7 77 691-776 20-96 (346)
251 PF04101 Glyco_tran_28_C: Glyc 27.8 28 0.00061 34.6 1.1 33 749-785 66-98 (167)
252 PRK14042 pyruvate carboxylase 27.7 5.9E+02 0.013 31.9 12.3 91 267-358 110-208 (596)
253 cd07939 DRE_TIM_NifV Streptomy 27.4 4.1E+02 0.009 29.0 10.0 78 280-358 116-193 (259)
254 COG0371 GldA Glycerol dehydrog 27.3 1.4E+02 0.0031 34.9 6.6 41 754-795 83-126 (360)
255 cd01744 GATase1_CPSase Small c 27.1 51 0.0011 33.8 2.8 35 755-789 39-79 (178)
256 TIGR00315 cdhB CO dehydrogenas 27.0 2.1E+02 0.0045 29.9 7.2 54 754-810 99-161 (162)
257 PRK00945 acetyl-CoA decarbonyl 25.7 2.2E+02 0.0048 30.0 7.1 52 754-810 107-169 (171)
258 PRK10586 putative oxidoreducta 25.6 70 0.0015 36.9 3.8 33 754-787 85-118 (362)
259 COG0745 OmpR Response regulato 25.4 3E+02 0.0064 29.9 8.3 99 692-812 2-119 (229)
260 cd01746 GATase1_CTP_Synthase T 24.4 1.4E+02 0.003 32.6 5.6 36 753-788 53-93 (235)
261 cd08198 DHQS-like2 Dehydroquin 24.4 1.4E+02 0.0029 35.0 5.8 33 754-787 98-133 (369)
262 PF00117 GATase: Glutamine ami 24.2 35 0.00077 34.8 1.0 37 753-789 40-82 (192)
263 PRK07567 glutamine amidotransf 23.8 58 0.0013 35.5 2.6 36 754-789 50-103 (242)
264 cd00861 ProRS_anticodon_short 23.4 1.8E+02 0.0038 26.1 5.3 62 690-765 1-64 (94)
265 PRK12581 oxaloacetate decarbox 23.1 4.4E+02 0.0096 32.0 9.8 91 267-358 119-217 (468)
266 PRK08195 4-hyroxy-2-oxovalerat 23.0 4.7E+02 0.01 30.1 9.7 82 276-358 117-200 (337)
267 KOG0782 Predicted diacylglycer 22.4 2E+02 0.0044 35.5 6.7 67 758-829 419-496 (1004)
268 cd01535 4RHOD_Repeat_4 Member 22.3 3.5E+02 0.0075 27.2 7.6 22 346-368 48-69 (145)
269 PRK15138 aldehyde reductase; P 22.0 80 0.0017 36.7 3.4 74 690-775 29-104 (387)
270 cd08550 GlyDH-like Glycerol_de 21.5 77 0.0017 36.0 3.1 33 754-787 76-109 (349)
271 KOG1510 RNA polymerase II holo 21.2 1.2E+02 0.0025 31.1 3.8 80 74-154 28-113 (139)
272 PRK09393 ftrA transcriptional 21.0 2E+02 0.0042 32.1 6.1 44 753-796 73-128 (322)
273 cd03785 GT1_MurG MurG is an N- 20.9 99 0.0021 33.8 3.7 58 750-811 247-324 (350)
274 PRK08250 glutamine amidotransf 20.8 81 0.0018 34.2 3.0 36 754-789 44-94 (235)
275 PRK11366 puuD gamma-glutamyl-g 20.3 1.1E+02 0.0023 33.7 3.8 67 708-789 29-117 (254)
No 1
>PLN02727 NAD kinase
Probab=100.00 E-value=1.5e-235 Score=2038.51 Aligned_cols=905 Identities=72% Similarity=1.091 Sum_probs=851.3
Q ss_pred ccccCCCccccccc---cccccCCceeEeeeeeEeeccchhhh-hccceEEEEeeeccccccccCccccccccCCCCCCC
Q 002281 7 MQRLSSPATGILCS---SKLHNNETKLWGFGFRFKLQRRNESV-RRRVKLVVSAELSKSFSLNLGLDSQVIQSNDPSQLP 82 (943)
Q Consensus 7 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (943)
|.|+ +|+|||++. ++++++++||+||||||. |++.+ ||++||||+|+||++||++||||||+||+||+||||
T Consensus 1 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (986)
T PLN02727 1 MARL-SPVTGILSSCLCSVKLNSDGKLLGFGFGFW---QRKEPLKRRLKFVVSAELSKSFSSNLGLDSQNFQSRDLSQLP 76 (986)
T ss_pred CCCC-CCccccccccccceeeccccceeccchhhh---hccHHHHhhhhheehhhhhhccccccCcccccccccchhcCc
Confidence 6788 999999744 999999999999999995 44555 999999999999999999999999999999999999
Q ss_pred ccCCCCCchhhHhhhhhhhHHHHHHHHHHHHhhcCCCccceeeeeccCCCCCCCcccceeechhhHHHhhccCCcccccc
Q 002281 83 WIGPVPGDIAEVEAYCRIFRAAERLHAALMDTLCNPLTGECTVSYEFTPEEKPLLEDKIVSVLGCMLSLLNKGREDVLSG 162 (943)
Q Consensus 83 ~~~~~~gd~~e~e~~cr~~~~a~~l~~a~~~~~~~~~~~ec~v~~~~~~~~~~~led~ii~~~~~~~~~ln~gr~~v~s~ 162 (943)
||||||||||||||||||||+|||||+|||+|||||+||||+|+|||++||+|.|||||+++||||+++||+||.||+||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 156 (986)
T PLN02727 77 WIGPVPGDIAEVEAYCRIFRAAERLHAALMDTLCNPLTGECPVSYDFTSEEKPLLEDKIVSVLGCMLSLLNKGREEVLSG 156 (986)
T ss_pred cccCCCccHHHHhhhhhHHHHHHHHHHHHHHHhcCcccccccccccCCccccchhhhhHHHHHHHHHHHHhcchhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccccccccccCCchhhhhhhhhhhhhHHHHHHHhccCCCCCchhhHHHHHHHHhhhcccCCCCCCCCCCCC
Q 002281 163 RSSIMNAYRVADISMTEDQLPPLAIFRSEMKRCCESMHIALENYLTPEDVRSLDVWRKLQRLKNVCYDSGFPRGDDYPIH 242 (943)
Q Consensus 163 ~~~~~~nf~~~~~~~~~~~~p~l~l~r~~l~~~~~~l~~~l~~yl~p~~~~sl~v~rkLqr~~n~~~d~g~pR~~g~p~~ 242 (943)
|+++|++|+++|++.||+++||||+||.+||+|||+||++|++||+|+++||++||||||||+|+|||.||||.+||||+
T Consensus 157 r~~~~~~~~~~~~~~~~~~~~~l~~~r~~~~~~ce~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~pr~~~~p~~ 236 (986)
T PLN02727 157 RSSIMSSFRGSEVSAMEDKLPPLAIFRGEMKRCCESLHVALENYLTPDDDRSLDVWRKLQRLKNVCYDAGFPRSDDYPCH 236 (986)
T ss_pred chhhhhhcccchhhhhhccCChHHHHHHHHHHHHHHHHHHHHhccCCCCCcchhHHHHHHHHHhhhhhcCCCCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeeeccCCccccccCCCcceEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEE
Q 002281 243 TLFANWSPVYLSNSKDDIASKDSEVTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKI 322 (943)
Q Consensus 243 t~iaNwr~V~l~~~~d~~~~~~~e~~LYRSGqpT~eDLa~Lk~lGIKTVIDLRse~~ee~~~~a~e~e~~e~~GI~yIhI 322 (943)
+.|+||.+|++++.+++....+.+..+|||+||+++++++|++.|||||||||++.++...+...++++++..|++|+|+
T Consensus 237 ~~~~n~~~v~~~~~~~~~~~~~~~~~~~rsgQpspe~la~LA~~GfKTIINLRpd~E~~q~~~~ee~eAae~~GL~yVhI 316 (986)
T PLN02727 237 TLFANWNPVYLSTSKEDIDSKESEAAFWRGGQVTEEGLKWLLEKGFKTIVDLRAEIVKDNFYQAAVDDAISSGKIEVVKI 316 (986)
T ss_pred ccccccceeeecccccccccccceeeEEEeCCCCHHHHHHHHHCCCeEEEECCCCCcCCCchhHHHHHHHHHcCCeEEEe
Confidence 99999999999999999999999999999999999999999999999999999987334555556788899999999999
Q ss_pred ecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCccCCchHHHHHHHHHHhcC-CCHHHHHHHhhccccccccchHHHhhhh
Q 002281 323 PVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMA-RCASQISGQTITSNDVLLKDSTRTRKLK 401 (943)
Q Consensus 323 PV~d~~~Ps~E~v~aFlelL~ds~~~PVLVHC~AGKDRTGALvaLlr~~lG-vs~edAiaDYLlsn~~~~~~~e~~r~~~ 401 (943)
||.....|+++++++|++++++..++|||+||++|+||||+|+++|++++- .....+. +.+
T Consensus 317 PVs~~~apt~EqVe~fa~~l~~slpkPVLvHCKSGarRAGamvA~yl~~~~~~~~~~~~------------------~~~ 378 (986)
T PLN02727 317 PVEVRTAPSAEQVEKFASLVSDSSKKPIYLHSKEGVWRTSAMVSRWKQYMTRSAERLLG------------------QNS 378 (986)
T ss_pred ecCCCCCCCHHHHHHHHHHHHhhcCCCEEEECCCCCchHHHHHHHHHHHHcccchhhhc------------------ccc
Confidence 998889999999999999996677999999999999999999999999753 3332221 223
Q ss_pred hchhhhhhhhhccchhhhHhhhhccCccccccccccccccccCCCcccc-cccccccccchhhccccCccccccccccCC
Q 002281 402 ASAGKFLLEEKYETVKENQDEIQTKNGVFGFGLSVDMDKRNQSNGAYKG-LSSVEGVESAKEVDTAVGSLGTTFSKETDP 480 (943)
Q Consensus 402 m~a~~~~l~~~~g~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (943)
.+..-..+.+++|++++.+++.+++|+.++..++..++++.+++++++| +.++|++...+++. +++++++||++|+||
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 457 (986)
T PLN02727 379 VVNGNGKLDQETGSLQETNDKDSSSNGSESGESCSIKDETGRSNLEAYNSLPSDQSTQQGEMVG-TGVESQSNFNMESDP 457 (986)
T ss_pred ccccCcccccccCccccccccccccCcccccccccccccccccccccccccccccccccccccc-ccccccceeeeecCc
Confidence 3334456779999999999999999999999999999999999999999 99999999999998 888999999999999
Q ss_pred ccccCCCCcccchHHHhhhhhccccCCCccccccccccccCC----------ccccCCCCccccccccccccccCCCCCC
Q 002281 481 FKAQVPPSNFVSKKEMSRFFRSKTTSPPRYFNYQSKRMDVLP----------SEIVSSGPVSGVAETRYSQWSLSGNNLS 550 (943)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (943)
||||+|||||||||||++|||+||++|++|+|||+|+|++|| ++|++.+++++++|+++||+++++++.+
T Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~sng~~s~kn~s 537 (986)
T PLN02727 458 LKAQVPPCDVFSKKEMSKFFRSKKIYPPTYLNYRRKGFEKLPVPQFTGVTQGSKIDDTDSISRLVETGRSNGLVSEKNSS 537 (986)
T ss_pred ccccCCCcccccHHHHHHHHhhcccCCcccccchhcccccCCccccccccchhhccCccchhhhhhccCCCccccccccC
Confidence 999999999999999999999999999999999999999998 7799999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCccccCCcCCccccCCCcccccccccccccccccccccccccccccccCCCCCCCCCCCCC-c
Q 002281 551 PNHQNLPAGSEKSSDNNGYVSAGCSTNGFDRGDRSSMTEANLLTSVTKNLDEQVISSSVRDVQRSNGKPSNSGDDDLG-P 629 (943)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 629 (943)
++.|++.+.+.|.+||+++.|+|++++.++...+.++++.+.+++|+++++.++++++.++.+.+||++++..+||++ +
T Consensus 538 ~d~qss~~~~~k~sNGss~~s~~s~s~~Ss~~~~~~~~ng~~stsv~~nl~~~v~s~s~res~s~Ng~a~vgssd~~~~~ 617 (986)
T PLN02727 538 PKYQSSEFDNGKSSNGSSFASDGSLSVASSITNGNPSNNGASSSTVSDNLERSVASVSVRESQRSNGKASLGSSDDELGA 617 (986)
T ss_pred ccccchhhccccCCCCccccccCcccccccccCCccccCCCccccccCCCcccccccccccccccCCccccccccCcccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred cccccccccccceeeecccccceeEeeecCcceeeeeecCCCccccCCchhhHhcccccCCCEEEEEecCChhHHHHHHH
Q 002281 630 IVGNMCASSTGVVRVQSRKKAEMFLVRTDGFSCNREKVTESSLAFTHPSTQQQMLMWKTTPRTVLVLKKPGPALMEEAKE 709 (943)
Q Consensus 630 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~c~r~~~~~s~~~~~~ps~~~~~l~w~~~pk~VlIv~K~~~~~~~~a~~ 709 (943)
||||||||+|||+|||+|||++||++||||||||||.+++|+++|+|||+||++|+|.+||++|+||+|+++++.+.+.+
T Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~c~~~~~~~~~~~~~~~s~~~~~l~W~~p~rtVgIV~K~~~ea~~~~~e 697 (986)
T PLN02727 618 IEGNMCASATGVVRVQSRRKAEMFLVRTDGFSCTREKVTESSLAFTHPSTQQQMLMWKSTPKTVLLLKKLGQELMEEAKE 697 (986)
T ss_pred ccccccccccccEEeeccCCcceEEEEecCcceeehhhccccccccCcchhceeeecCCCCCEEEEEcCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988889999
Q ss_pred HHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccccccCccEEEEEcCCchHHHHhhhccCCCCcEEEEeCCC
Q 002281 710 VASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGS 789 (943)
Q Consensus 710 l~~~L~~~~g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIvLGGDGTiL~Aar~~~~~~~PVLGIN~Gs 789 (943)
|++||.+++|++|++|++.++.+...+.++....++..+..++.+++|+||+||||||||+|+|++....+||||||+|+
T Consensus 698 L~~~L~~~~gi~V~VE~~~a~~l~~~~~~~~~~~~~~~~~~el~~~~DLVIvLGGDGTlLrAar~~~~~~iPILGINlGr 777 (986)
T PLN02727 698 VASFLYHQEKMNVLVEPDVHDIFARIPGFGFVQTFYSQDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVVSFNLGS 777 (986)
T ss_pred HHHHHHhCCCeEEEEecchHHHhhccccccccceecccchhhcccCCCEEEEECCcHHHHHHHHHhcCCCCCEEEEeCCC
Confidence 99999876799999999988776555555444455545555666789999999999999999999999999999999999
Q ss_pred CcccCCCCchhHHHHHHHHHcCCCCCCceeeeeeeEEEEEEEeCCeecCCccccceeeEEEecCCCCeeEEEEEEECCEE
Q 002281 790 LGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVVDRGSNPYLSKIECYEHDRL 869 (943)
Q Consensus 790 LGFLt~~~~ed~~~~L~~ll~G~~~v~~~~i~~R~rL~~~V~r~G~~~~~~~~~ALNEVvI~Rg~~~~l~~i~v~idg~~ 869 (943)
||||++++++++++.|+++++|+|.++++++++|++|+|+|.++|+.+.+..++|||||+|.|+..++|++++|||||++
T Consensus 778 LGFLTdi~~ee~~~~L~~Il~G~y~i~~~~ie~R~~L~~~V~r~g~~i~~~~~~ALNEVVI~Rg~~~~mi~ieVyIDg~~ 857 (986)
T PLN02727 778 LGFLTSHYFEDFRQDLRQVIHGNNTLDGVYITLRMRLRCEIFRNGKAMPGKVFDVLNEVVVDRGSNPYLSKIECYEHDRL 857 (986)
T ss_pred ccccccCCHHHHHHHHHHHHcCCccccccccceeeEEEEEEecCCcccccccceEEEEEEEecCCCccEEEEEEEECCEE
Confidence 99999999999999999999999876566789999999999988876543346899999999999999999999999999
Q ss_pred eEEEeeCeEEeCCCcchHHHhhhcCCCCCCCCCCeEEEEEccCCCCCCCCEEecCCCeEEEEEec
Q 002281 870 ITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSARLELKVKL 934 (943)
Q Consensus 870 v~~~rgDGlIVSTPTGSTAYslSAGGPIV~P~v~~ivlTPIcPhsLs~RPlVLp~~s~I~Iki~~ 934 (943)
+++|+||||||||||||||||||||||||||++++|+|||||||+|++||||||++++|+|++..
T Consensus 858 l~tyrgDGLIVSTPTGSTAYSLSAGGPIVhP~v~aIvITPIcPHSLs~RPIVLp~ds~I~IkI~~ 922 (986)
T PLN02727 858 ITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSARLELKIPD 922 (986)
T ss_pred eEEeecceEEEECCCchHHhHhhcCCceeCCCCCeEEEEecCcccCCCCCEEECCCCeEEEEEcc
Confidence 99999999999999999999999999999999999999999999999999999999999999864
No 2
>KOG2178 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.1e-60 Score=517.30 Aligned_cols=272 Identities=46% Similarity=0.773 Sum_probs=228.9
Q ss_pred ceeeeeecCCCccccCCchhhHhcccccCCCEEEEEecCChhHHHHHHHHHHHHhcCC-CeEEEEcCChhhhh--hcC--
Q 002281 661 SCNREKVTESSLAFTHPSTQQQMLMWKTTPRTVLVLKKPGPALMEEAKEVASFLYHQE-KMNILVEPDVHDIF--ARI-- 735 (943)
Q Consensus 661 ~c~r~~~~~s~~~~~~ps~~~~~l~w~~~pk~VlIv~K~~~~~~~~a~~l~~~L~~~~-g~~V~ve~~~~~~~--~~~-- 735 (943)
||+++....+...-.-+....|.+.|.+||++|+|.||.+..+.+..+++++||.... .+.|+++.++++.. ...
T Consensus 65 sn~~~~~~~~~~~~~~~~~~s~~l~~~~p~~~~lv~K~~d~s~~~~~~Elv~~ll~~~~~i~V~v~~~~~~~~~f~~~~~ 144 (409)
T KOG2178|consen 65 SNSRELMSNVAAVRSIQKSLSQRLIWLKPPKNLLVTKKNDESVLEKFVELVEWLLQTFPNITVYVEDKVAKDKQFSAGNL 144 (409)
T ss_pred ccchhhhhhhhhhhhccchhhhchhccCCCceEEEEcCCcHHHHHHHHHHHHHHHhhCCCeEEEechhhhhhhhhcccch
Confidence 6667533322222233345667899999999999988888889999999999997654 69999999987632 110
Q ss_pred -CCCcc---ceeeeccCccccccCccEEEEEcCCchHHHHhhhccCCCCcEEEEeCCCCcccCCCCchhHHHHHHHHHcC
Q 002281 736 -PGFGF---VQTFYLQDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYG 811 (943)
Q Consensus 736 -~~~~~---~~~~~~~~~~~l~~~~DlVIvLGGDGTiL~Aar~~~~~~~PVLGIN~GsLGFLt~~~~ed~~~~L~~ll~G 811 (943)
..++. +..+..+...++.+.+|+|||||||||+|+|+.+|++..|||+.|++|+|||||+|+++++++.|.++++|
T Consensus 145 ~e~~~~~~~i~y~~~e~~~d~~~~~D~iItLGGDGTvL~aS~LFq~~VPPV~sFslGslGFLtpf~f~~f~~~l~~v~~~ 224 (409)
T KOG2178|consen 145 DESFGVKERILYWTTEGCDDLPNRFDLIITLGGDGTVLYASSLFQRSVPPVLSFSLGSLGFLTPFPFANFQEQLARVLNG 224 (409)
T ss_pred hhcccchhceEeeccccccccccceeEEEEecCCccEEEehhhhcCCCCCeEEeecCCccccccccHHHHHHHHHHHhcC
Confidence 01111 11122233467788999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceeeeeeeEEEEEEEeCCeecC---CccccceeeEEEecCCCCeeEEEEEEECCEEeEEEeeCeEEeCCCcchHH
Q 002281 812 NNTLDGVYITLRMRLCCEIFRNGKAMP---GKVFDVLNEVVVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTA 888 (943)
Q Consensus 812 ~~~v~~~~i~~R~rL~~~V~r~G~~~~---~~~~~ALNEVvI~Rg~~~~l~~i~v~idg~~v~~~rgDGlIVSTPTGSTA 888 (943)
+ .++.+||||+|+++|.+.... ...+++||||+|+||.+++|+.+++|+||+++|+++||||||||||||||
T Consensus 225 ~-----~~v~lR~RL~C~i~rk~~~~~~~~~~~~~vLNEvvIdRGpsP~ls~l~ly~d~~~iT~vq~DGliVaTPTGSTA 299 (409)
T KOG2178|consen 225 R-----AAVNLRMRLRCSLKRKDLAEKTHAASSHYVLNEVVIDRGPSPFLSNLDLYVDDKLITKVQGDGLIVATPTGSTA 299 (409)
T ss_pred c-----ceEeeeeeEEEEEEEecccccccccceEEEeeeEEEccCCCchhcceeEEecCcEEEEEecceEEEecCCchhh
Confidence 8 357999999999998654321 22689999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCCCCCCCCeEEEEEccCCCCCCCCEEecCCCeEEEEEecccc
Q 002281 889 YSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSARLELKVKLLLF 937 (943)
Q Consensus 889 YslSAGGPIV~P~v~~ivlTPIcPhsLs~RPlVLp~~s~I~Iki~~~~~ 937 (943)
||+|||||||||+++||++||||||+|+|||||||++.+|+|+|+.+.+
T Consensus 300 YS~sAGGSlvhP~vpAIlvTPICPhSLSFRPIIlPds~~L~I~i~~dsR 348 (409)
T KOG2178|consen 300 YSASAGGSLVHPSVPAILVTPICPHSLSFRPIILPDSSELRVEVPLDSR 348 (409)
T ss_pred hHhhcCCceecCCCCeEEEeccCCCcccccceEccCccEEEEEeCcccc
Confidence 9999999999999999999999999999999999999999999997765
No 3
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=100.00 E-value=5.2e-57 Score=510.88 Aligned_cols=255 Identities=46% Similarity=0.804 Sum_probs=215.6
Q ss_pred cCCchhhHhcccccCCCEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcC-CCCccceeeec-cCccc
Q 002281 675 THPSTQQQMLMWKTTPRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARI-PGFGFVQTFYL-QDTSD 751 (943)
Q Consensus 675 ~~ps~~~~~l~w~~~pk~VlIv~K~~~-~~~~~a~~l~~~L~~~~g~~V~ve~~~~~~~~~~-~~~~~~~~~~~-~~~~~ 751 (943)
+.+|++|..|.|.++|++|+||.|++. ++.+.+.+|++||.+.+|+.|+++++....+... +.++....+.. .+..+
T Consensus 179 ~~~~~~~~~l~w~~~p~~VgIV~n~~k~~a~el~~~I~~~L~~~~gi~V~ve~~~a~~l~~~~~~~~~~~~~~~~~~~~~ 258 (508)
T PLN02935 179 AERSSKQISLKWESDPQTVLIITKPNSTSVRVLCAEMVRWLREQKGLNIYVEPRVKKELLSESSYFNFVQTWEDEKEILL 258 (508)
T ss_pred ccCCCceEEeeecCCCCEEEEEecCCCHHHHHHHHHHHHHHHhcCCCEEEEechhhhhhccccccccccccccccchhhh
Confidence 456788889999999999999999886 5778899999999745789999998765433110 00111110000 11122
Q ss_pred cccCccEEEEEcCCchHHHHhhhccCCCCcEEEEeCCCCcccCCCCchhHHHHHHHHHcCCCCCCceeeeeeeEEEEEEE
Q 002281 752 LHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIF 831 (943)
Q Consensus 752 l~~~~DlVIvLGGDGTiL~Aar~~~~~~~PVLGIN~GsLGFLt~~~~ed~~~~L~~ll~G~~~v~~~~i~~R~rL~~~V~ 831 (943)
+..++|+||+||||||||+|+|.+....+||+|||+|+||||++++++++++.|+++++|+| .++.|+||+|.|.
T Consensus 259 l~~~~DlVIsiGGDGTlL~Aar~~~~~~iPILGIN~G~LGFLt~i~~~e~~~~Le~il~G~y-----~Ie~R~~L~~~v~ 333 (508)
T PLN02935 259 LHTKVDLVITLGGDGTVLWAASMFKGPVPPVVPFSMGSLGFMTPFHSEQYRDCLDAILKGPI-----SITLRHRLQCHII 333 (508)
T ss_pred cccCCCEEEEECCcHHHHHHHHHhccCCCcEEEEeCCCcceecccCHHHHHHHHHHHHcCCc-----eEEEEeEEEEEEE
Confidence 44579999999999999999999998899999999999999999999999999999999985 4799999999998
Q ss_pred eCCeecC---CccccceeeEEEecCCCCeeEEEEEEECCEEeEEEeeCeEEeCCCcchHHHhhhcCCCCCCCCCCeEEEE
Q 002281 832 RNGKAMP---GKVFDVLNEVVVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFT 908 (943)
Q Consensus 832 r~G~~~~---~~~~~ALNEVvI~Rg~~~~l~~i~v~idg~~v~~~rgDGlIVSTPTGSTAYslSAGGPIV~P~v~~ivlT 908 (943)
++++... ...++|||||+|.|+..++++++++||||+++++|+||||||||||||||||||||||||||++++|+||
T Consensus 334 ~~~~~~~~~~~~~~~ALNEvvI~rg~~~~~i~l~V~Idg~~v~~~rgDGLIVSTPTGSTAYsLSAGGPIV~P~l~~ivlT 413 (508)
T PLN02935 334 RDAAKNEYETEEPILVLNEVTIDRGISSFLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFT 413 (508)
T ss_pred cCCceecccccccceeccceEEecCCCceEEEEEEEECCEeEEEEECCcEEEecCccHHHHHHhcCCcccCCCCCeEEEE
Confidence 7764321 1235799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCCCCCCEEecCCCeEEEEEec
Q 002281 909 PICPHSLSFRPVILPDSARLELKVKL 934 (943)
Q Consensus 909 PIcPhsLs~RPlVLp~~s~I~Iki~~ 934 (943)
|||||+|++||||||++++|+|+++.
T Consensus 414 PIcPHsLs~RPIVlp~~s~I~I~v~~ 439 (508)
T PLN02935 414 PICPHSLSFRPLILPEYVTIRVQVPF 439 (508)
T ss_pred ecCCCcCCCCCeEECCCCEEEEEEcc
Confidence 99999999999999999999999863
No 4
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=7.4e-55 Score=470.07 Aligned_cols=234 Identities=28% Similarity=0.504 Sum_probs=204.0
Q ss_pred CCCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccccccCccEEEEEcCCchH
Q 002281 689 TPRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVI 768 (943)
Q Consensus 689 ~pk~VlIv~K~~~~~~~~a~~l~~~L~~~~g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIvLGGDGTi 768 (943)
.+++|+|+.++.++..+.+.++++||.+ ++++++++++.+..+. .+++ ...++.+++|+||+|||||||
T Consensus 9 ~~~~i~ii~~~~~~~~~~~~~i~~~l~~-~g~~~~~~~~~~~~~~-~~~~---------~~~~~~~~~Dlvi~iGGDGT~ 77 (287)
T PRK14077 9 NIKKIGLVTRPNVSLDKEILKLQKILSI-YKVEILLEKESAEILD-LPGY---------GLDELFKISDFLISLGGDGTL 77 (287)
T ss_pred cCCEEEEEeCCcHHHHHHHHHHHHHHHH-CCCEEEEecchhhhhc-cccc---------chhhcccCCCEEEEECCCHHH
Confidence 4788999999888778889999999965 6899999887655442 1111 112344578999999999999
Q ss_pred HHHhhhccCCCCcEEEEeCCCCcccCCCCchhHHHHHHHHHcCCCCCCceeeeeeeEEEEEEEeCCeecCCccccceeeE
Q 002281 769 LHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEV 848 (943)
Q Consensus 769 L~Aar~~~~~~~PVLGIN~GsLGFLt~~~~ed~~~~L~~ll~G~~~v~~~~i~~R~rL~~~V~r~G~~~~~~~~~ALNEV 848 (943)
|+|+|.+...++||+|||+|+||||+++++++++++|+++++|+|. ++.|++|++++.++++.. ...+||||+
T Consensus 78 L~aa~~~~~~~~PilGIN~G~lGFLt~~~~~~~~~~l~~i~~g~y~-----ie~r~~L~~~v~~~~~~~--~~~~AlNev 150 (287)
T PRK14077 78 ISLCRKAAEYDKFVLGIHAGHLGFLTDITVDEAEKFFQAFFQGEFE-----IEKPYMLSVFLEKKQGKI--LEKLAFNDV 150 (287)
T ss_pred HHHHHHhcCCCCcEEEEeCCCcccCCcCCHHHHHHHHHHHHcCCCe-----EEEEEEEEEEEEeCCceE--EEEEEeeee
Confidence 9999999988999999999999999999999999999999999864 689999999998766432 124799999
Q ss_pred EEecCCCCeeEEEEEEECCEEeEEEeeCeEEeCCCcchHHHhhhcCCCCCCCCCCeEEEEEccCCCCCCCCEEecCCCeE
Q 002281 849 VVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSARL 928 (943)
Q Consensus 849 vI~Rg~~~~l~~i~v~idg~~v~~~rgDGlIVSTPTGSTAYslSAGGPIV~P~v~~ivlTPIcPhsLs~RPlVLp~~s~I 928 (943)
+|.|+..++++++++++||+++++|+||||||||||||||||+|||||||+|++++|+|||||||++++||+|||++++|
T Consensus 151 vi~~~~~~~~~~~~v~id~~~~~~~~~DGlIVSTPTGSTAYslSAGGPIv~P~~~~~~ltPI~Phsl~~rpiVl~~~~~I 230 (287)
T PRK14077 151 VISKNNQASMAHIEAFLNEKYFNEYFGDGVIVATPAGSTAYNMSANGPIIYPLSQVFILTPVCSHSLTQRPIVLPKGFEV 230 (287)
T ss_pred eeccCCCccEEEEEEEECCEEEEEEEcCEEEEeCCCchhHhHhhcCCcccCCCCCeEEEEecccccccCCCEEECCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEe---ccccccc
Q 002281 929 ELKVK---LLLFFGT 940 (943)
Q Consensus 929 ~Iki~---~~~~~~~ 940 (943)
+|++. ...+||.
T Consensus 231 ~i~~~~~~~l~~DG~ 245 (287)
T PRK14077 231 EFKTKSDCILCIDGQ 245 (287)
T ss_pred EEEECCCEEEEEcCC
Confidence 99864 3344543
No 5
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=1.7e-54 Score=470.75 Aligned_cols=239 Identities=28% Similarity=0.407 Sum_probs=202.8
Q ss_pred ccCCCEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhc-CCCCc--cceeeeccCccccccCccEEEEE
Q 002281 687 KTTPRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFAR-IPGFG--FVQTFYLQDTSDLHERVDFVACL 762 (943)
Q Consensus 687 ~~~pk~VlIv~K~~~-~~~~~a~~l~~~L~~~~g~~V~ve~~~~~~~~~-~~~~~--~~~~~~~~~~~~l~~~~DlVIvL 762 (943)
++++++|+||.|++. ++.+.+.++++||.+ .|++|++++..+..+.. .+..+ .....+. ...++.+++|+||+|
T Consensus 2 ~~~~~~I~iv~~~~~~~~~~~~~~l~~~L~~-~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~D~vi~l 79 (306)
T PRK03372 2 MTASRRVLLVAHTGRDEATEAARRVAKQLGD-AGIGVRVLDAEAVDLGATHPAPDDFRAMEVVD-ADPDAADGCELVLVL 79 (306)
T ss_pred CCCccEEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEeechhhhhccccccccccccccccc-chhhcccCCCEEEEE
Confidence 357899999999875 577889999999975 68999998765443221 11000 0000000 012344578999999
Q ss_pred cCCchHHHHhhhccCCCCcEEEEeCCCCcccCCCCchhHHHHHHHHHcCCCCCCceeeeeeeEEEEEEEeCCeecCCccc
Q 002281 763 GGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVF 842 (943)
Q Consensus 763 GGDGTiL~Aar~~~~~~~PVLGIN~GsLGFLt~~~~ed~~~~L~~ll~G~~~v~~~~i~~R~rL~~~V~r~G~~~~~~~~ 842 (943)
|||||||+|+|.+....+||+|||+|+||||+++++++++++|+++++|+| .++.|++|++++.++|+... ..
T Consensus 80 GGDGT~L~aar~~~~~~~PilGIN~G~lGFL~~~~~~~~~~~l~~i~~g~y-----~i~~R~~L~~~v~~~g~~~~--~~ 152 (306)
T PRK03372 80 GGDGTILRAAELARAADVPVLGVNLGHVGFLAEAEAEDLDEAVERVVDRDY-----RVEERMTLDVTVRVGGEIVW--RG 152 (306)
T ss_pred cCCHHHHHHHHHhccCCCcEEEEecCCCceeccCCHHHHHHHHHHHHcCCc-----eEEEeeeEEEEEEECCEEEe--ee
Confidence 999999999999988899999999999999999999999999999999985 46899999999988886542 35
Q ss_pred cceeeEEEecCCCCeeEEEEEEECCEEeEEEeeCeEEeCCCcchHHHhhhcCCCCCCCCCCeEEEEEccCCCCCCCCEEe
Q 002281 843 DVLNEVVVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVIL 922 (943)
Q Consensus 843 ~ALNEVvI~Rg~~~~l~~i~v~idg~~v~~~rgDGlIVSTPTGSTAYslSAGGPIV~P~v~~ivlTPIcPhsLs~RPlVL 922 (943)
+||||++|.|+..+++++++++|||+++++|+||||||||||||||||||||||||+|++++|+|||||||+++.||+|+
T Consensus 153 ~ALNdvvi~r~~~~~~~~~~v~idg~~~~~~~~DGlIVsTPTGSTAYslSAGGPIv~P~~~~~~itPI~Ph~l~~RplVv 232 (306)
T PRK03372 153 WALNEASLEKADREGMLEVVLEVDGRPVSSFGCDGVLVSTPTGSTAYAFSAGGPVVWPDLEALLVVPLNAHALFARPLVV 232 (306)
T ss_pred eEEEeEEeecCCCCcEEEEEEEECCEEEEEEecCEEEEeCCCchHHHHhhcCCcccCCCCCeEEEEecccccCCCCCeEE
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeEEEEEec
Q 002281 923 PDSARLELKVKL 934 (943)
Q Consensus 923 p~~s~I~Iki~~ 934 (943)
|++++|+|++..
T Consensus 233 ~~~~~I~i~~~~ 244 (306)
T PRK03372 233 SPTSTVAVEILA 244 (306)
T ss_pred CCCCEEEEEEec
Confidence 999999998753
No 6
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=3.4e-54 Score=466.69 Aligned_cols=234 Identities=29% Similarity=0.532 Sum_probs=200.9
Q ss_pred ccCCCEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhh---hhh-cCCCCccceeeeccCccccccCccEEEE
Q 002281 687 KTTPRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHD---IFA-RIPGFGFVQTFYLQDTSDLHERVDFVAC 761 (943)
Q Consensus 687 ~~~pk~VlIv~K~~~-~~~~~a~~l~~~L~~~~g~~V~ve~~~~~---~~~-~~~~~~~~~~~~~~~~~~l~~~~DlVIv 761 (943)
++++++|+|+.|++. +..+.+.++++||.+ +|++|++++.... .+. ..++. ...+..++.+.+|+||+
T Consensus 2 ~~~~~~i~ii~~~~~~~~~~~~~~l~~~L~~-~g~~v~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~D~vi~ 74 (296)
T PRK04539 2 NSPFHNIGIVTRPNTPDIQDTAHTLITFLKQ-HGFTVYLDEVGIKEGCIYTQDTVGC------HIVNKTELGQYCDLVAV 74 (296)
T ss_pred CCCCCEEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEecccccccchhccccccc------cccchhhcCcCCCEEEE
Confidence 456789999999876 567889999999965 6899999764321 110 00010 00112344457999999
Q ss_pred EcCCchHHHHhhhccCCCCcEEEEeCCCCcccCCCCchhHHHHHHHHHcCCCCCCceeeeeeeEEEEEEEeCCeecCCcc
Q 002281 762 LGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKV 841 (943)
Q Consensus 762 LGGDGTiL~Aar~~~~~~~PVLGIN~GsLGFLt~~~~ed~~~~L~~ll~G~~~v~~~~i~~R~rL~~~V~r~G~~~~~~~ 841 (943)
||||||||+|+|.+....+||+|||+|+||||++++++++++.|+++++|+| .++.|++|++++.++|+... .
T Consensus 75 lGGDGT~L~aa~~~~~~~~PilGIN~G~lGFL~~~~~~~~~~~l~~i~~g~~-----~~~~r~~l~~~v~~~~~~~~--~ 147 (296)
T PRK04539 75 LGGDGTFLSVAREIAPRAVPIIGINQGHLGFLTQIPREYMTDKLLPVLEGKY-----LAEERILIEAALIREGKTAE--R 147 (296)
T ss_pred ECCcHHHHHHHHHhcccCCCEEEEecCCCeEeeccCHHHHHHHHHHHHcCCc-----eEEEeeeEEEEEEECCeeee--e
Confidence 9999999999999988899999999999999999999999999999999985 46899999999988876542 3
Q ss_pred ccceeeEEEecCCCCeeEEEEEEECCEEeEEEeeCeEEeCCCcchHHHhhhcCCCCCCCCCCeEEEEEccCCCCCCCCEE
Q 002281 842 FDVLNEVVVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVI 921 (943)
Q Consensus 842 ~~ALNEVvI~Rg~~~~l~~i~v~idg~~v~~~rgDGlIVSTPTGSTAYslSAGGPIV~P~v~~ivlTPIcPhsLs~RPlV 921 (943)
.+||||++|.|+..++++++++++||+++++|+||||||||||||||||+|||||||+|++++|++||||||+++.||+|
T Consensus 148 ~~ALNdvvi~~~~~~~~~~~~v~id~~~~~~~~~DGlIVsTPTGSTAYslSAGGPIv~P~~~~~~itPI~Phsl~~rplV 227 (296)
T PRK04539 148 ALALNDAVLSRGGAGQMIEFEVFVNREFVYTQRSDGLIVSTPTGSTAYSLAAGGPIMQAGLHAFTLVPICPQSMTNRPIA 227 (296)
T ss_pred eeeehhhhhccCCcCceEEEEEEECCEEEEEEecCeEEEECCCcHHHHHhhCCCceeCCCCCeEEEEecCcCcccCCCEE
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCeEEEEEec
Q 002281 922 LPDSARLELKVKL 934 (943)
Q Consensus 922 Lp~~s~I~Iki~~ 934 (943)
+|++++|+|++..
T Consensus 228 l~~~~~i~i~~~~ 240 (296)
T PRK04539 228 IPDTSEIEILVTQ 240 (296)
T ss_pred ECCCCEEEEEEcC
Confidence 9999999998753
No 7
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=1.5e-53 Score=463.28 Aligned_cols=234 Identities=27% Similarity=0.416 Sum_probs=198.3
Q ss_pred CEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCc--c-ceeeeccCccccccCccEEEEEcCCc
Q 002281 691 RTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFG--F-VQTFYLQDTSDLHERVDFVACLGGDG 766 (943)
Q Consensus 691 k~VlIv~K~~~-~~~~~a~~l~~~L~~~~g~~V~ve~~~~~~~~~~~~~~--~-~~~~~~~~~~~l~~~~DlVIvLGGDG 766 (943)
++|+|+.++.. +..+.+.++.+||.+ .|++++++++.++.+. ..... . .......+..++.+.+|++|+|||||
T Consensus 2 ~~igiv~n~~~~~~~~~~~~l~~~L~~-~g~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~iGGDG 79 (305)
T PRK02649 2 PKAGIIYNDGKPLAVRTAEELQDKLEA-AGWEVVRASSSGGILG-YANPDQPVCHTGIDQLVPPGFDSSMKFAIVLGGDG 79 (305)
T ss_pred CEEEEEEcCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhcC-ccccccccccccccccChhhcccCcCEEEEEeCcH
Confidence 57999988775 577889999999964 6899999876544331 11100 0 00000001134445789999999999
Q ss_pred hHHHHhhhccCCCCcEEEEeCCCCcccCCCCchhHHHHHHHHHcCCCCCCceeeeeeeEEEEEEEeCCeecCCcccccee
Q 002281 767 VILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLN 846 (943)
Q Consensus 767 TiL~Aar~~~~~~~PVLGIN~GsLGFLt~~~~ed~~~~L~~ll~G~~~v~~~~i~~R~rL~~~V~r~G~~~~~~~~~ALN 846 (943)
|||+|+|.+...++||+|||+|+||||++++++++++.|+++++|+| .++.|++|+|++.++|+.+. ..+|||
T Consensus 80 TlL~aar~~~~~~iPilGIN~G~lGFLt~~~~~~~~~~l~~l~~g~y-----~ie~r~~L~~~v~~~~~~~~--~~~ALN 152 (305)
T PRK02649 80 TVLSAARQLAPCGIPLLTINTGHLGFLTEAYLNQLDEAIDQVLAGQY-----TIEERTMLTVSVMRGDQLRW--EALSLN 152 (305)
T ss_pred HHHHHHHHhcCCCCcEEEEeCCCCcccccCCHHHHHHHHHHHHcCCc-----EEEEeeeEEEEEEECCccee--eeeeee
Confidence 99999999988899999999999999999999999999999999985 47899999999987775431 247999
Q ss_pred eEEEecCCCCeeEEEEEEECCEEeEEEeeCeEEeCCCcchHHHhhhcCCCCCCCCCCeEEEEEccCCCCCCCCEEecCCC
Q 002281 847 EVVVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSA 926 (943)
Q Consensus 847 EVvI~Rg~~~~l~~i~v~idg~~v~~~rgDGlIVSTPTGSTAYslSAGGPIV~P~v~~ivlTPIcPhsLs~RPlVLp~~s 926 (943)
|++|.|+..++|+++++++||+++++|+||||||||||||||||||||||||||++++|+|||||||++++||||||+++
T Consensus 153 evvi~~~~~~~~~~~~v~id~~~~~~~~~DGlIVsTPTGSTAYslSAGGPIv~P~~~~~~itPI~Phsl~~RplVlp~~~ 232 (305)
T PRK02649 153 EMVLHREPLTSMCHFEIAIGRHAPVDIAADGVILSTPTGSTAYSLSAGGPVITPDVPVLQLTPICPHSLASRALVFSDSE 232 (305)
T ss_pred eeeeecCCCccEEEEEEEECCEEEEEEecCeEEEeCCCcHHHHHhhCCCcccCCCCCeEEEEecCcCCCCCCCEEECCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEe
Q 002281 927 RLELKVK 933 (943)
Q Consensus 927 ~I~Iki~ 933 (943)
+|+|++.
T Consensus 233 ~I~i~~~ 239 (305)
T PRK02649 233 PVTVFPA 239 (305)
T ss_pred EEEEEec
Confidence 9999864
No 8
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=2.1e-53 Score=459.84 Aligned_cols=231 Identities=27% Similarity=0.487 Sum_probs=194.4
Q ss_pred EEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeecc-CccccccCccEEEEEcCCchHH
Q 002281 692 TVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQ-DTSDLHERVDFVACLGGDGVIL 769 (943)
Q Consensus 692 ~VlIv~K~~~-~~~~~a~~l~~~L~~~~g~~V~ve~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~DlVIvLGGDGTiL 769 (943)
+|+|+.|+.. +..+.+.++++||.+ .|++|+++++.++.+.....+. ...... +..++.+.+|+||+||||||||
T Consensus 2 ~igii~~~~~~~~~~~~~~i~~~l~~-~g~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~dlvi~lGGDGT~L 78 (292)
T PRK01911 2 KIAIFGQTYQESASPYIQELFDELEE-RGAEVLIEEKFLDFLKQDLKFH--PSYDTFSDNEELDGSADMVISIGGDGTFL 78 (292)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhhccccccc--cccccccchhhcccCCCEEEEECCcHHHH
Confidence 4888888765 677889999999965 6899999887654332100000 000000 1134445789999999999999
Q ss_pred HHhhhccCCCCcEEEEeCCCCcccCCCCchhHHHHHHHHHcCCCCCCceeeeeeeEEEEEEEeCCeecCCccccceeeEE
Q 002281 770 HASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVV 849 (943)
Q Consensus 770 ~Aar~~~~~~~PVLGIN~GsLGFLt~~~~ed~~~~L~~ll~G~~~v~~~~i~~R~rL~~~V~r~G~~~~~~~~~ALNEVv 849 (943)
+|+|.+...++||+|||+|+||||++++++++++.|+++++|+|. ++.|++|++++ +++... ...+||||++
T Consensus 79 ~aa~~~~~~~~PilGIN~G~lGFLt~~~~~~~~~~l~~i~~g~~~-----i~~r~~L~~~~--~~~~~~-~~~~alNdvv 150 (292)
T PRK01911 79 RTATYVGNSNIPILGINTGRLGFLATVSKEEIEETIDELLNGDYT-----IEERSLLQLES--NPKLFG-ELNFALNEIA 150 (292)
T ss_pred HHHHHhcCCCCCEEEEecCCCCcccccCHHHHHHHHHHHHcCCce-----EEEEeeEEEEE--cCCcce-eeeEEEEEEE
Confidence 999999888999999999999999999999999999999999854 68999999985 333211 1357999999
Q ss_pred EecCCCCeeEEEEEEECCEEeEEEeeCeEEeCCCcchHHHhhhcCCCCCCCCCCeEEEEEccCCCCCCCCEEecCCCeEE
Q 002281 850 VDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSARLE 929 (943)
Q Consensus 850 I~Rg~~~~l~~i~v~idg~~v~~~rgDGlIVSTPTGSTAYslSAGGPIV~P~v~~ivlTPIcPhsLs~RPlVLp~~s~I~ 929 (943)
|.|+..++++++++++||+++++|+||||||||||||||||+|||||||||++++|++||||||++++||+|+|+++.|+
T Consensus 151 i~r~~~~~~i~~~v~idg~~~~~~~~DGlIVsTPTGSTAYslSAGGPIv~P~~~~~~ltPI~Ph~l~~RplVl~~~~~I~ 230 (292)
T PRK01911 151 ILKRDTSSMITVHTYLNGEYLNSYWADGLIVATPTGSTGYSLSCGGPIIVPDAKSFVITPIAPHNLNVRPLVIPDDTEIT 230 (292)
T ss_pred EecCCCCcEEEEEEEECCEEEEEEeeceeEECCCCcHHHHHhhCCCcccCCCCCEEEEEecccCccCCCCEEECCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEe
Q 002281 930 LKVK 933 (943)
Q Consensus 930 Iki~ 933 (943)
|++.
T Consensus 231 i~~~ 234 (292)
T PRK01911 231 LEVE 234 (292)
T ss_pred EEEe
Confidence 9875
No 9
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=3.9e-53 Score=457.74 Aligned_cols=232 Identities=27% Similarity=0.480 Sum_probs=201.2
Q ss_pred cCCCEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccccccCccEEEEEcCCc
Q 002281 688 TTPRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDG 766 (943)
Q Consensus 688 ~~pk~VlIv~K~~~-~~~~~a~~l~~~L~~~~g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIvLGGDG 766 (943)
...++|+|+.|++. ++.+.+.++++||.+ +|++++++++.+..+. .... . ..+..++.+++|+||+|||||
T Consensus 3 ~~~~~i~iv~~~~~~~~~~~~~~i~~~l~~-~g~~v~~~~~~~~~~~-~~~~---~---~~~~~~~~~~~d~vi~lGGDG 74 (292)
T PRK03378 3 NHFKCIGIVGHPRHPTALTTHEMLYHWLTS-KGYEVIVEQQIAHELQ-LKNV---K---TGTLAEIGQQADLAIVVGGDG 74 (292)
T ss_pred ccCCEEEEEEeCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhcC-cccc---c---ccchhhcCCCCCEEEEECCcH
Confidence 34688999999876 567889999999965 6899999887554321 1100 0 011134455799999999999
Q ss_pred hHHHHhhhccCCCCcEEEEeCCCCcccCCCCchhHHHHHHHHHcCCCCCCceeeeeeeEEEEEEEeCCeecCCcccccee
Q 002281 767 VILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLN 846 (943)
Q Consensus 767 TiL~Aar~~~~~~~PVLGIN~GsLGFLt~~~~ed~~~~L~~ll~G~~~v~~~~i~~R~rL~~~V~r~G~~~~~~~~~ALN 846 (943)
|||+|+|.+....+||+|||+|+||||+++++++++++|+++++|+| .++.|++|++++.++++.. ..++|||
T Consensus 75 T~L~aa~~~~~~~~Pilgin~G~lGFl~~~~~~~~~~~l~~i~~g~~-----~i~~r~~L~~~v~~~~~~~--~~~~aLN 147 (292)
T PRK03378 75 NMLGAARVLARYDIKVIGINRGNLGFLTDLDPDNALQQLSDVLEGHY-----ISEKRFLLEAQVCRHGQQK--RISTAIN 147 (292)
T ss_pred HHHHHHHHhcCCCCeEEEEECCCCCcccccCHHHHHHHHHHHHcCCc-----eEEEEEEEEEEEEeCCceE--EeEEEEE
Confidence 99999999988889999999999999999999999999999999985 4689999999998777543 2357999
Q ss_pred eEEEecCCCCeeEEEEEEECCEEeEEEeeCeEEeCCCcchHHHhhhcCCCCCCCCCCeEEEEEccCCCCCCCCEEecCCC
Q 002281 847 EVVVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSA 926 (943)
Q Consensus 847 EVvI~Rg~~~~l~~i~v~idg~~v~~~rgDGlIVSTPTGSTAYslSAGGPIV~P~v~~ivlTPIcPhsLs~RPlVLp~~s 926 (943)
|++|.++..++++++++++||+++++|+|||+||||||||||||||||||||+|++++|++||||||++++||+|||+++
T Consensus 148 dvvi~~~~~~~~i~~~v~idg~~~~~~~~DGlIvsTptGSTAYslSAGGPii~P~~~~~~itPI~Phsl~~rplVl~~~~ 227 (292)
T PRK03378 148 EVVLHPGKVAHMIEFEVYIDDNFAFSQRSDGLIISTPTGSTAYSLSAGGPILTPSLDAITLVPMFPHTLSARPLVIDSSS 227 (292)
T ss_pred EEEEccCCCccEEEEEEEECCEEEEEEEccEEEEeCCCchHHhHhhcCCceeCCCCCeEEEEecccccCCCCCEEECCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEec
Q 002281 927 RLELKVKL 934 (943)
Q Consensus 927 ~I~Iki~~ 934 (943)
+|+|++..
T Consensus 228 ~i~i~~~~ 235 (292)
T PRK03378 228 TIRLKFSP 235 (292)
T ss_pred EEEEEEcc
Confidence 99998854
No 10
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=100.00 E-value=6.6e-52 Score=448.02 Aligned_cols=232 Identities=31% Similarity=0.548 Sum_probs=200.0
Q ss_pred cCCCEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccccccCccEEEEEcCCc
Q 002281 688 TTPRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDG 766 (943)
Q Consensus 688 ~~pk~VlIv~K~~~-~~~~~a~~l~~~L~~~~g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIvLGGDG 766 (943)
+..++|+|+.|.+. ++.+.+.++++||.+ .+++++++......+.. ..+. ..+.+++.+.+|+||++||||
T Consensus 3 ~~~~~v~iv~~~~~~~~~e~~~~i~~~L~~-~g~~v~v~~~~~~~~~~-~~~~------~~~~~~~~~~~d~vi~~GGDG 74 (291)
T PRK02155 3 SQFKTVALIGRYQTPGIAEPLESLAAFLAK-RGFEVVFEADTARNIGL-TGYP------ALTPEEIGARADLAVVLGGDG 74 (291)
T ss_pred CcCCEEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhcCc-cccc------ccChhHhccCCCEEEEECCcH
Confidence 34688999988775 577889999999965 68999998765432211 0000 011133445789999999999
Q ss_pred hHHHHhhhccCCCCcEEEEeCCCCcccCCCCchhHHHHHHHHHcCCCCCCceeeeeeeEEEEEEEeCCeecCCcccccee
Q 002281 767 VILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLN 846 (943)
Q Consensus 767 TiL~Aar~~~~~~~PVLGIN~GsLGFLt~~~~ed~~~~L~~ll~G~~~v~~~~i~~R~rL~~~V~r~G~~~~~~~~~ALN 846 (943)
|||+|+|.+...++|++|||+|+||||++++++++++.|+++++|+|. ++.|++|++++.++|+.+. .++|||
T Consensus 75 t~l~~~~~~~~~~~pilGIn~G~lGFL~~~~~~~~~~~l~~~~~g~~~-----i~~r~~L~~~v~~~~~~~~--~~~AlN 147 (291)
T PRK02155 75 TMLGIGRQLAPYGVPLIGINHGRLGFITDIPLDDMQETLPPMLAGNYE-----EEERMLLEARVVRDGEPIF--HALAFN 147 (291)
T ss_pred HHHHHHHHhcCCCCCEEEEcCCCccccccCCHHHHHHHHHHHHcCCce-----EEEeEEEEEEEEECCeEEE--eeeeee
Confidence 999999999888999999999999999999999999999999999854 6899999999887776532 357999
Q ss_pred eEEEecCCCCeeEEEEEEECCEEeEEEeeCeEEeCCCcchHHHhhhcCCCCCCCCCCeEEEEEccCCCCCCCCEEecCCC
Q 002281 847 EVVVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSA 926 (943)
Q Consensus 847 EVvI~Rg~~~~l~~i~v~idg~~v~~~rgDGlIVSTPTGSTAYslSAGGPIV~P~v~~ivlTPIcPhsLs~RPlVLp~~s 926 (943)
|++|.|+..+++++++++|||+++++++||||||||||||||||+|||||||+|++++|++||||||+++.||+|+|+++
T Consensus 148 ev~v~~~~~~~~~~~~v~i~~~~~~~~~gDGlIVsTPtGSTAYslSaGGPIv~p~~~~~~ltPI~p~~l~~rpiVl~~~~ 227 (291)
T PRK02155 148 DVVVNRSGFSGMVELRVSVDGRFMYNQRSDGLIVATPTGSTAYALSAGGPILHPQLPGWVLVPIAPHTLSNRPIVLPDDS 227 (291)
T ss_pred heeeccCCCCceEEEEEEECCEEEEEEecCeEEEECCCchhhhhhhcCCcccCCCCCeEEEEecCcCccCCCCEEECCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEec
Q 002281 927 RLELKVKL 934 (943)
Q Consensus 927 ~I~Iki~~ 934 (943)
.|+|++..
T Consensus 228 ~i~i~~~~ 235 (291)
T PRK02155 228 EVAIQIVG 235 (291)
T ss_pred EEEEEEcC
Confidence 99999853
No 11
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=1e-51 Score=442.72 Aligned_cols=213 Identities=30% Similarity=0.538 Sum_probs=185.3
Q ss_pred HHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccccccCccEEEEEcCCchHHHHhhhccCCCCcEEEEe
Q 002281 707 AKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFN 786 (943)
Q Consensus 707 a~~l~~~L~~~~g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIvLGGDGTiL~Aar~~~~~~~PVLGIN 786 (943)
++++++||.+ +|++|+++++.+..+. .... ...+..++.+.+|+||+||||||||+|+|.+...++||+|||
T Consensus 2 ~~~l~~~l~~-~g~~v~~~~~~~~~~~-~~~~------~~~~~~~~~~~~d~vi~iGGDGT~L~aa~~~~~~~~PilgIn 73 (272)
T PRK02231 2 HKNLFHWLKE-RGYQVLVEKEIAEQLN-LPEN------HLASLEEIGQRAQLAIVIGGDGNMLGRARVLAKYDIPLIGIN 73 (272)
T ss_pred HHHHHHHHHH-CCCEEEEecchhhhcC-cccc------ccCChHHhCcCCCEEEEECCcHHHHHHHHHhccCCCcEEEEe
Confidence 5788999965 6899999887554331 1100 001113445578999999999999999999988899999999
Q ss_pred CCCCcccCCCCchhHHHHHHHHHc-CCCCCCceeeeeeeEEEEEEEeCCeecCCccccceeeEEEecCCCCeeEEEEEEE
Q 002281 787 LGSLGFLTSHPFEDYRQDLRQVIY-GNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVVDRGSNPYLSKIECYE 865 (943)
Q Consensus 787 ~GsLGFLt~~~~ed~~~~L~~ll~-G~~~v~~~~i~~R~rL~~~V~r~G~~~~~~~~~ALNEVvI~Rg~~~~l~~i~v~i 865 (943)
+|+||||++++++++.+.|+++++ |+| .++.|++|+|++.++|+.+. ..+||||++|.++..++++++++++
T Consensus 74 ~G~lGFL~~~~~~~~~~~l~~~~~~g~~-----~i~~r~~L~~~v~~~~~~~~--~~~alNev~i~~~~~~~~~~~~v~i 146 (272)
T PRK02231 74 RGNLGFLTDIDPKNAYEQLEACLERGEF-----FVEERFLLEAKIERNGKIIA--TSNALNEVVIHPAKIAHMIDFHVYI 146 (272)
T ss_pred CCCCcccccCCHHHHHHHHHHHHhcCCc-----eEEEeeeEEEEEEECCeEee--eeEEEEEEEEecCCCCceEEEEEEE
Confidence 999999999999999999999998 885 47899999999987776542 3579999999999999999999999
Q ss_pred CCEEeEEEeeCeEEeCCCcchHHHhhhcCCCCCCCCCCeEEEEEccCCCCCCCCEEecCCCeEEEEEec
Q 002281 866 HDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSARLELKVKL 934 (943)
Q Consensus 866 dg~~v~~~rgDGlIVSTPTGSTAYslSAGGPIV~P~v~~ivlTPIcPhsLs~RPlVLp~~s~I~Iki~~ 934 (943)
||+++++|+||||||||||||||||+|||||||+|++++|++||||||+++.||||+|++++|+|++..
T Consensus 147 ~~~~~~~~~~DGlIVsTPtGSTAY~lSAGGPIv~P~~~~~~itPI~Phsl~~RpiVl~~~~~I~i~~~~ 215 (272)
T PRK02231 147 DDKFAFSQRSDGLIISTPTGSTAYSLSAGGPILTPNLNAIALVPMFPHTLSSRPLVIDGDSKISLRFAE 215 (272)
T ss_pred CCEEEEEEecCeEEEECCCcHHHHHhhCCCceeCCCCCeEEEEeccccccCCCCEEECCCCEEEEEEcC
Confidence 999999999999999999999999999999999999999999999999999999999999999998753
No 12
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=2.7e-51 Score=444.03 Aligned_cols=229 Identities=28% Similarity=0.544 Sum_probs=198.1
Q ss_pred CCEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccccccCccEEEEEcCCchH
Q 002281 690 PRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVI 768 (943)
Q Consensus 690 pk~VlIv~K~~~-~~~~~a~~l~~~L~~~~g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIvLGGDGTi 768 (943)
.++|+||.+++. .+.+.++++.+||.+ .++++++++...+.+... .. . .....++.+.+|+||++|||||+
T Consensus 4 ~~~v~iv~~~~k~~a~e~~~~i~~~L~~-~giev~v~~~~~~~~~~~-~~---~---~~~~~~~~~~~d~vi~~GGDGt~ 75 (295)
T PRK01231 4 FRNIGLIGRLGSSSVVETLRRLKDFLLD-RGLEVILDEETAEVLPGH-GL---Q---TVSRKLLGEVCDLVIVVGGDGSL 75 (295)
T ss_pred CCEEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhcCcc-cc---c---ccchhhcccCCCEEEEEeCcHHH
Confidence 468999988775 567788999999965 689999987654322110 00 0 00112344578999999999999
Q ss_pred HHHhhhccCCCCcEEEEeCCCCcccCCCCchhHHHHHHHHHcCCCCCCceeeeeeeEEEEEEEeCCeecCCccccceeeE
Q 002281 769 LHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEV 848 (943)
Q Consensus 769 L~Aar~~~~~~~PVLGIN~GsLGFLt~~~~ed~~~~L~~ll~G~~~v~~~~i~~R~rL~~~V~r~G~~~~~~~~~ALNEV 848 (943)
|++++.+....+||+|||+|++|||+++++++++++|+++++|+|. ++.|++|++++.++|+.+. .++||||+
T Consensus 76 l~~~~~~~~~~~Pvlgin~G~lGFl~~~~~~~~~~~l~~~~~g~~~-----i~~r~~L~~~v~~~~~~~~--~~~ALNev 148 (295)
T PRK01231 76 LGAARALARHNVPVLGINRGRLGFLTDIRPDELEFKLAEVLDGHYQ-----EEERFLLEAEVRRGGEVIG--QGDALNDV 148 (295)
T ss_pred HHHHHHhcCCCCCEEEEeCCcccccccCCHHHHHHHHHHHHcCCce-----EEEEEEEEEEEEECCcEEe--eeeEEEEE
Confidence 9999999888999999999999999999999999999999999864 6899999999987776432 35799999
Q ss_pred EEecCCCCeeEEEEEEECCEEeEEEeeCeEEeCCCcchHHHhhhcCCCCCCCCCCeEEEEEccCCCCCCCCEEecCCCeE
Q 002281 849 VVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSARL 928 (943)
Q Consensus 849 vI~Rg~~~~l~~i~v~idg~~v~~~rgDGlIVSTPTGSTAYslSAGGPIV~P~v~~ivlTPIcPhsLs~RPlVLp~~s~I 928 (943)
+|.++..+++++++++|||+++++|+||||||||||||||||+|||||||||++++|+|||||||+++.||||+|++++|
T Consensus 149 vi~~~~~~~~~~~~v~id~~~~~~~~~DGlivsTptGSTAY~lSAGGpIv~p~~~~~~itPI~ph~l~~rpiVl~~~~~I 228 (295)
T PRK01231 149 VLHPGKSTRMIEFELYIDGQFVCSQRSDGLIVSTPTGSTAYALSGGGPIMHPKLDAIVLVPMFPHTLSSRPIVVDGNSEI 228 (295)
T ss_pred EEccCCCCcEEEEEEEECCEEEEEEEcceEEEeCCCCchhhhhhcCCceecCCCCeEEEEecCCCccCCCCEEECCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEe
Q 002281 929 ELKVK 933 (943)
Q Consensus 929 ~Iki~ 933 (943)
+|++.
T Consensus 229 ~i~~~ 233 (295)
T PRK01231 229 KIVIS 233 (295)
T ss_pred EEEEc
Confidence 99985
No 13
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=3.7e-51 Score=438.19 Aligned_cols=214 Identities=30% Similarity=0.533 Sum_probs=186.5
Q ss_pred EEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccccccCccEEEEEcCCchHHH
Q 002281 692 TVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILH 770 (943)
Q Consensus 692 ~VlIv~K~~~-~~~~~a~~l~~~L~~~~g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIvLGGDGTiL~ 770 (943)
+|+|+.++.. +..+.+.++++|| + .+++++++.+.++.+. ... .+..+. ++|++|++|||||||+
T Consensus 2 ~i~iv~~~~~~~~~~~~~~i~~~l-~-~g~~~~~~~~~~~~~~-~~~---------~~~~~~--~~D~vi~lGGDGT~L~ 67 (271)
T PRK01185 2 KVAFVIRKDCKRCIKIAKSIIELL-P-PDWEIIYEMEAAKALG-MDG---------LDIEEI--NADVIITIGGDGTILR 67 (271)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHH-h-cCCEEEEechhhhhcC-ccc---------Cccccc--CCCEEEEEcCcHHHHH
Confidence 3888888664 6778899999999 4 4899998876544331 110 011222 6899999999999999
Q ss_pred HhhhccCCCCcEEEEeCCCCcccCCCCchhHHHHHHHHHcCCCCCCceeeeeeeEEEEEEEeCCeecCCccccceeeEEE
Q 002281 771 ASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVV 850 (943)
Q Consensus 771 Aar~~~~~~~PVLGIN~GsLGFLt~~~~ed~~~~L~~ll~G~~~v~~~~i~~R~rL~~~V~r~G~~~~~~~~~ALNEVvI 850 (943)
|+|.+. +||+|||+|+||||++++++++++.|+++++|+|. ++.|++|++.+ +|+. .++||||++|
T Consensus 68 a~~~~~---~PilGIN~G~lGFL~~~~~~~~~~~l~~i~~g~~~-----i~~r~~L~~~v--~g~~----~~~aLNdvvv 133 (271)
T PRK01185 68 TLQRAK---GPILGINMGGLGFLTEIEIDEVGSAIKKLIRGEYF-----IDERMKLKVYI--NGER----LEDCTNEAVI 133 (271)
T ss_pred HHHHcC---CCEEEEECCCCccCcccCHHHHHHHHHHHHcCCcE-----EEEeeEEEEEE--CCcE----eEEEEEEEEE
Confidence 999874 59999999999999999999999999999999854 68899999987 5543 2469999999
Q ss_pred ecCCCCeeEEEEEEECCEEeEEEeeCeEEeCCCcchHHHhhhcCCCCCCCCCCeEEEEEccCCCCCCCCEEecCCCeEEE
Q 002281 851 DRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSARLEL 930 (943)
Q Consensus 851 ~Rg~~~~l~~i~v~idg~~v~~~rgDGlIVSTPTGSTAYslSAGGPIV~P~v~~ivlTPIcPhsLs~RPlVLp~~s~I~I 930 (943)
.++..++++++++++||+++.+|+||||||||||||||||+|||||||+|++++|++||||||+++.||+|+|++++|+|
T Consensus 134 ~~~~~~~~i~~~v~i~~~~~~~~~~DGlIVsTPTGSTAYslSAGGPIv~P~~~~~~ltPI~Ph~l~~rplVl~~~~~I~i 213 (271)
T PRK01185 134 HTDRIAKIRQFKIYYDGHFLDTFKADGVIVATPTGSTSYSSSAGGPILLPNLEGMVISYIAPYSSRPKSVVVPSESTVEI 213 (271)
T ss_pred ecCCCCcEEEEEEEECCEEEEEEEeeEEEEeCCCchHHHHhhCCCceeCCCCCeEEEEecccCCCCCCCEEECCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEe
Q 002281 931 KVK 933 (943)
Q Consensus 931 ki~ 933 (943)
++.
T Consensus 214 ~~~ 216 (271)
T PRK01185 214 KIA 216 (271)
T ss_pred EEc
Confidence 975
No 14
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=6e-51 Score=474.84 Aligned_cols=241 Identities=29% Similarity=0.537 Sum_probs=207.1
Q ss_pred cccccCCCEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhc-CCCCccceeeeccCccccccCccEEEE
Q 002281 684 LMWKTTPRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFAR-IPGFGFVQTFYLQDTSDLHERVDFVAC 761 (943)
Q Consensus 684 l~w~~~pk~VlIv~K~~~-~~~~~a~~l~~~L~~~~g~~V~ve~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~DlVIv 761 (943)
-.|..+|++|+||.|++. +..+.+.++++||.+ .+++|++++.....+.. ... .. ....+ ..++|+||+
T Consensus 284 ~~w~~~~~~i~iv~~~~~~~~~~~~~~i~~~l~~-~~~~v~~~~~~~~~~~~~~~~-----~~--~~~~~-~~~~dlvi~ 354 (569)
T PRK14076 284 NKWRIKPTKFGIVSRIDNEEAINLALKIIKYLDS-KGIPYELESFLYNKLKNRLNE-----EC--NLIDD-IEEISHIIS 354 (569)
T ss_pred hhcccCCcEEEEEcCCCCHHHHHHHHHHHHHHHH-CCCEEEEechhhhhhcccccc-----cc--ccccc-ccCCCEEEE
Confidence 479999999999999775 577889999999975 68999998875543321 000 00 00011 236899999
Q ss_pred EcCCchHHHHhhhccCCCCcEEEEeCCCCcccCCCCchhHHHHHHHHHcCCCCCCceeeeeeeEEEEEEEeCCeecCCcc
Q 002281 762 LGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKV 841 (943)
Q Consensus 762 LGGDGTiL~Aar~~~~~~~PVLGIN~GsLGFLt~~~~ed~~~~L~~ll~G~~~v~~~~i~~R~rL~~~V~r~G~~~~~~~ 841 (943)
||||||||+|+|.+...++||+|||+|+||||++++++++.+.|+++++|+| .++.|++|+|++.++++.. ..
T Consensus 355 lGGDGT~L~aa~~~~~~~~PilGin~G~lGFL~~~~~~~~~~~l~~~~~g~~-----~i~~r~~L~~~v~~~~~~~--~~ 427 (569)
T PRK14076 355 IGGDGTVLRASKLVNGEEIPIICINMGTVGFLTEFSKEEIFKAIDSIISGEY-----EIEKRTKLSGFILKDGHQN--IL 427 (569)
T ss_pred ECCcHHHHHHHHHhcCCCCCEEEEcCCCCCcCcccCHHHHHHHHHHHHcCCc-----eEEEeEEEEEEEEECCcce--ee
Confidence 9999999999999998899999999999999999999999999999999985 4689999999998876543 23
Q ss_pred ccceeeEEEecCCCCeeEEEEEEECCEEeEEEeeCeEEeCCCcchHHHhhhcCCCCCCCCCCeEEEEEccCCCCCCCCEE
Q 002281 842 FDVLNEVVVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVI 921 (943)
Q Consensus 842 ~~ALNEVvI~Rg~~~~l~~i~v~idg~~v~~~rgDGlIVSTPTGSTAYslSAGGPIV~P~v~~ivlTPIcPhsLs~RPlV 921 (943)
.+||||++|.|+..+++++++|+|||+++++|+||||||||||||||||||||||||+|++++|+|||||||+++.||||
T Consensus 428 ~~alNdv~i~~~~~~~~~~~~v~i~~~~~~~~~~DGlivsTptGSTaYslSAGGPiv~p~~~~~~~tPI~ph~l~~rplV 507 (569)
T PRK14076 428 PSALNEVVITTKNPAKMLHFEVYVNGELVEEVRADGIIISTPTGSTAYSLSAGGPIVEPTVDGFIIVPICPFKLSSRPLV 507 (569)
T ss_pred eEEEEEEEEccCCCCceEEEEEEECCEEEEEEECCEEEEeCCCchHHHHhhCCCceeCCCCCeEEEEeeccCCCCCCCEE
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCeEEEEEe----ccccccc
Q 002281 922 LPDSARLELKVK----LLLFFGT 940 (943)
Q Consensus 922 Lp~~s~I~Iki~----~~~~~~~ 940 (943)
||++++|+|++. ...+||.
T Consensus 508 ~~~~~~i~i~~~~~~~~l~~DG~ 530 (569)
T PRK14076 508 VSANSEIKIKLLKKSALVVIDGS 530 (569)
T ss_pred ECCCCEEEEEEeCCcEEEEECCc
Confidence 999999999873 2345553
No 15
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=100.00 E-value=5.8e-50 Score=430.81 Aligned_cols=223 Identities=35% Similarity=0.642 Sum_probs=197.3
Q ss_pred CEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccccccCccEEEEEcCCchHH
Q 002281 691 RTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL 769 (943)
Q Consensus 691 k~VlIv~K~~~-~~~~~a~~l~~~L~~~~g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIvLGGDGTiL 769 (943)
++|+|+.++.. +....++.+..|+.. .+..+.++++..+.+... . .+ .+...+.+|+|+++|||||+|
T Consensus 1 ~~~~i~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~l~~~--~----~~----~~~~~~~~d~ivvlGGDGtlL 69 (281)
T COG0061 1 KKVGIVGRPDKPEALKIAKRLYEFLKF-KGVTVEVDQELAEELKDF--A----DY----VDDDEEKADLIVVLGGDGTLL 69 (281)
T ss_pred CeEEEEecCCcHHHHHHHHHHHHHHHh-cCceEEEechhhhhcccc--c----cc----ccccccCceEEEEeCCcHHHH
Confidence 46889998886 477888999999964 688899888887765421 0 00 111236799999999999999
Q ss_pred HHhhhccCCCCcEEEEeCCCCcccCCCCchhHHHHHHHHHcCCCCCCceeeeeeeEEEEEEEeCCeecCCccccceeeEE
Q 002281 770 HASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVV 849 (943)
Q Consensus 770 ~Aar~~~~~~~PVLGIN~GsLGFLt~~~~ed~~~~L~~ll~G~~~v~~~~i~~R~rL~~~V~r~G~~~~~~~~~ALNEVv 849 (943)
++++.+...++||+|||+|+|||||+++++++++.++++++|+| .++.|++|++.+.+.+ . ...+||||++
T Consensus 70 ~~~~~~~~~~~pilgin~G~lGFLt~~~~~~~~~~~~~~~~~~~-----~~~~r~~l~~~v~~~~--~--~~~~aLNEv~ 140 (281)
T COG0061 70 RAARLLARLDIPVLGINLGHLGFLTDFEPDELEKALDALLEGEY-----RIEERLLLEVSVNRGD--I--RRALALNEVV 140 (281)
T ss_pred HHHHHhccCCCCEEEEeCCCcccccccCHHHHHHHHHHHhcCce-----EEEEeEEEEEEEEeCC--c--cccceeeEEE
Confidence 99999999899999999999999999999999999999999764 4689999999997765 1 3578999999
Q ss_pred EecCCCCeeEEEEEEECCEEeEEEeeCeEEeCCCcchHHHhhhcCCCCCCCCCCeEEEEEccCCCCCCCCEEecCCCeEE
Q 002281 850 VDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSARLE 929 (943)
Q Consensus 850 I~Rg~~~~l~~i~v~idg~~v~~~rgDGlIVSTPTGSTAYslSAGGPIV~P~v~~ivlTPIcPhsLs~RPlVLp~~s~I~ 929 (943)
|.++..++|+.+++|+||+++++++||||||||||||||||+|||||||||++++|+|||||||++++||+|+|..++|+
T Consensus 141 I~~~~~~~~~~~~v~id~~~~~~~r~DGliVsTPTGSTAY~lSAGGPIv~P~l~ai~ltpi~p~~l~~Rpiv~p~~~~v~ 220 (281)
T COG0061 141 IHRGSPAKMIEFEVYIDDEFFESFRGDGLIVSTPTGSTAYNLSAGGPILHPGLDAIQLTPICPHSLSFRPLVLPSSSTVR 220 (281)
T ss_pred EecCCCCcEEEEEEEECCEEEEEEecCEEEEEcCCcHHHHhhhcCCCccCCCCCeEEEeecCCCcccCCCEEECCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEe
Q 002281 930 LKVK 933 (943)
Q Consensus 930 Iki~ 933 (943)
+++.
T Consensus 221 i~~~ 224 (281)
T COG0061 221 IEVL 224 (281)
T ss_pred EEEc
Confidence 9987
No 16
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=7.8e-50 Score=426.58 Aligned_cols=204 Identities=24% Similarity=0.400 Sum_probs=181.5
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccccccCccEEEEEcCCchHHH
Q 002281 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILH 770 (943)
Q Consensus 691 k~VlIv~K~~~~~~~~a~~l~~~L~~~~g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIvLGGDGTiL~ 770 (943)
++|+|+.+..+...+.++++.+||.+ .|++++++ .+++|++|+||||||||+
T Consensus 3 ~~i~iv~~~~~~a~~~~~~l~~~l~~-~g~~~~~~---------------------------~~~~D~vi~lGGDGT~L~ 54 (264)
T PRK03501 3 RNLFFFYKRDKELVEKVKPLKKIAEE-YGFTVVDH---------------------------PKNANIIVSIGGDGTFLQ 54 (264)
T ss_pred cEEEEEECCCHHHHHHHHHHHHHHHH-CCCEEEcC---------------------------CCCccEEEEECCcHHHHH
Confidence 37899988887778889999999965 46766521 034799999999999999
Q ss_pred HhhhccCC-CCcEEEEeC-CCCcccCCCCchhHHHHHHHHHcCCCCCCceeeeeeeEEEEEEEeCCeecCCccccceeeE
Q 002281 771 ASNLFRGA-VPPVISFNL-GSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEV 848 (943)
Q Consensus 771 Aar~~~~~-~~PVLGIN~-GsLGFLt~~~~ed~~~~L~~ll~G~~~v~~~~i~~R~rL~~~V~r~G~~~~~~~~~ALNEV 848 (943)
|+|.+... .+||+|||+ |+||||++++++++++.|+++++|+|. +++|++|++++ +|+. .++||||+
T Consensus 55 a~~~~~~~~~~pilgIn~~G~lGFL~~~~~~~~~~~l~~i~~g~~~-----~~~r~~l~~~v--~~~~----~~~alNev 123 (264)
T PRK03501 55 AVRKTGFREDCLYAGISTKDQLGFYCDFHIDDLDKMIQAITKEEIE-----VRKYPTIEVTV--DGST----SFYCLNEF 123 (264)
T ss_pred HHHHhcccCCCeEEeEecCCCCeEcccCCHHHHHHHHHHHHcCCcE-----EEEeeeEEEEE--CCcc----ceEEEEEE
Confidence 99998765 789999999 999999999999999999999999854 68999999987 4432 25799999
Q ss_pred EEecCCCCeeEEEEEEECCEEeEEEeeCeEEeCCCcchHHHhhhcCCCCCCCCCCeEEEEEccCCCCC-C----CCEEec
Q 002281 849 VVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLS-F----RPVILP 923 (943)
Q Consensus 849 vI~Rg~~~~l~~i~v~idg~~v~~~rgDGlIVSTPTGSTAYslSAGGPIV~P~v~~ivlTPIcPhsLs-~----RPlVLp 923 (943)
+| ++..++++.++++|||+++++|+||||||||||||||||+|||||||+|++++|+|||||||+++ + ||+|+|
T Consensus 124 vi-~~~~~~~~~~~v~id~~~~~~~~~DGlIVsTPtGSTAY~lSAGGPIv~P~~~~~~itPI~P~~~~~~~~l~rpiVl~ 202 (264)
T PRK03501 124 SI-RSSIIKTFVIDVYIDDLHFETFRGDGMVVSTPTGSTAYNKSVRGAVVDPLIPCFQVSELASLNNNTYRTLGSPFILS 202 (264)
T ss_pred EE-cCCCCceEEEEEEECCEEeEEEecCEEEEeCCCchHHHHhhcCCcccCCCCCeEEEEeccccCccccccCCCCEEEC
Confidence 99 77778899999999999999999999999999999999999999999999999999999999987 6 999999
Q ss_pred CCCeEEEEEec
Q 002281 924 DSARLELKVKL 934 (943)
Q Consensus 924 ~~s~I~Iki~~ 934 (943)
++++|+|++..
T Consensus 203 ~~~~I~i~~~~ 213 (264)
T PRK03501 203 HERKLTLKIVQ 213 (264)
T ss_pred CCCEEEEEEec
Confidence 99999998763
No 17
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=1.8e-49 Score=426.57 Aligned_cols=221 Identities=33% Similarity=0.577 Sum_probs=189.2
Q ss_pred EEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCcccc-ccCccEEEEEcCCchHH
Q 002281 692 TVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVIL 769 (943)
Q Consensus 692 ~VlIv~K~~~-~~~~~a~~l~~~L~~~~g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~DlVIvLGGDGTiL 769 (943)
+|+|+.+.+. +..+.+.++++||.+ .+++|.++++.......... ....+. ..++|+||++|||||+|
T Consensus 2 ~v~iv~~~~k~~~~~~~~~I~~~L~~-~g~~v~v~~~~~~~~~~~~~---------~~~~~~~~~~~d~vi~iGGDGTlL 71 (277)
T PRK03708 2 RFGIVARRDKEEALKLAYRVYDFLKV-SGYEVVVDSETYEHLPEFSE---------EDVLPLEEMDVDFIIAIGGDGTIL 71 (277)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHH-CCCEEEEecchhhhcCcccc---------cccccccccCCCEEEEEeCcHHHH
Confidence 5888888775 677889999999965 68999987653322110000 000111 23689999999999999
Q ss_pred HHhhhccCCCCcEEEEeCCCCcccCCCCchhHHHHHHHHHcCCCCCCceeeeeeeEEEEEEEeCCeecCCccccceeeEE
Q 002281 770 HASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVV 849 (943)
Q Consensus 770 ~Aar~~~~~~~PVLGIN~GsLGFLt~~~~ed~~~~L~~ll~G~~~v~~~~i~~R~rL~~~V~r~G~~~~~~~~~ALNEVv 849 (943)
+|+| +....+||+|||+|++|||++++++++.++|+++++|+| .++.|++|++.+ +|+. .++||||++
T Consensus 72 ~a~~-~~~~~~pi~gIn~G~lGFl~~~~~~~~~~~l~~i~~g~~-----~~~~r~~l~~~~--~~~~----~~~alNdv~ 139 (277)
T PRK03708 72 RIEH-KTKKDIPILGINMGTLGFLTEVEPEETFFALSRLLEGDY-----FIDERIKLRVYI--NGEN----VPDALNEVV 139 (277)
T ss_pred HHHH-hcCCCCeEEEEeCCCCCccccCCHHHHHHHHHHHHcCCc-----eEEEeEEEEEEE--CCeE----eEEEeeeEE
Confidence 9999 667789999999999999999999999999999999985 468999999987 5543 257999999
Q ss_pred EecCCCCeeEEEEEEECCEEeEEEeeCeEEeCCCcchHHHhhhcCCCCCCCCCCeEEEEEccCCCCCCCCEEecCCCeEE
Q 002281 850 VDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSARLE 929 (943)
Q Consensus 850 I~Rg~~~~l~~i~v~idg~~v~~~rgDGlIVSTPTGSTAYslSAGGPIV~P~v~~ivlTPIcPhsLs~RPlVLp~~s~I~ 929 (943)
|.++..++++++++++||+++++|+||||||||||||||||+|||||||||++++|++||||||+++.||||+|++++|+
T Consensus 140 v~~~~~~~~~~~~v~idg~~~~~~~gDGvIvsTptGSTAY~lSaGGpIv~p~~~~~~vtPi~p~~l~~rplV~~~~~~i~ 219 (277)
T PRK03708 140 ILTGIPGKIIHLKYYVDGELADEVRADGLIISTPTGSTAYAMSAGGPFVDPRLDAILIAPLCPFKLSSRPMVVPSSSRID 219 (277)
T ss_pred EecCCCCcEEEEEEEECCEEEEEEecCEEEEeCCCchHHHHhhCCCcccCCCCCeEEEEecccccCCCCCEEECCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEec
Q 002281 930 LKVKL 934 (943)
Q Consensus 930 Iki~~ 934 (943)
|++..
T Consensus 220 l~~~~ 224 (277)
T PRK03708 220 VKLLR 224 (277)
T ss_pred EEEec
Confidence 99743
No 18
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=2.1e-48 Score=423.27 Aligned_cols=226 Identities=31% Similarity=0.513 Sum_probs=188.7
Q ss_pred CCEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccccccCccEEEEEcCCchH
Q 002281 690 PRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVI 768 (943)
Q Consensus 690 pk~VlIv~K~~~-~~~~~a~~l~~~L~~~~g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIvLGGDGTi 768 (943)
.++|+||.+++. ...+.+.++++||.+ .|++|.++....+... ... + .......+|+||++||||||
T Consensus 3 ~kkv~lI~n~~~~~~~~~~~~i~~~L~~-~g~~v~v~~~~~~~~~-~~~------~----~~~~~~~~d~vi~~GGDGT~ 70 (305)
T PRK02645 3 LKQVIIAYKAGSSQAKEAAERCAKQLEA-RGCKVLMGPSGPKDNP-YPV------F----LASASELIDLAIVLGGDGTV 70 (305)
T ss_pred cCEEEEEEeCCCHHHHHHHHHHHHHHHH-CCCEEEEecCchhhcc-ccc------h----hhccccCcCEEEEECCcHHH
Confidence 467999988875 566788999999964 6899888775432111 000 0 12234468999999999999
Q ss_pred HHHhhhccCCCCcEEEEeC-CCCcccCCCC--chhHHHHHHHHHcCCCCCCceeeeeeeEEEEEEEeCCee---cCCccc
Q 002281 769 LHASNLFRGAVPPVISFNL-GSLGFLTSHP--FEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKA---MPGKVF 842 (943)
Q Consensus 769 L~Aar~~~~~~~PVLGIN~-GsLGFLt~~~--~ed~~~~L~~ll~G~~~v~~~~i~~R~rL~~~V~r~G~~---~~~~~~ 842 (943)
|++++.+...++||+|||+ |+||||+++. .++ ++.|+++++|+|. ++.|++|+|++.++|+. .....+
T Consensus 71 l~~~~~~~~~~~pv~gin~~G~lGFL~~~~~~~~~-~~~l~~i~~g~~~-----i~~r~~L~~~~~~~~~~~~~~~~~~~ 144 (305)
T PRK02645 71 LAAARHLAPHDIPILSVNVGGHLGFLTHPRDLLQD-ESVWDRLQEDRYA-----IERRMMLQARVFEGDRSNEEPVSESY 144 (305)
T ss_pred HHHHHHhccCCCCEEEEecCCcceEecCchhhcch-HHHHHHHHcCCce-----EEEeeEEEEEEEeCCcccccccccce
Confidence 9999999888999999999 8999999885 344 7899999999854 68999999999876531 011246
Q ss_pred cceeeEEEecCCCCeeE--EEEEEECCEEeEEEeeCeEEeCCCcchHHHhhhcCCCCCCCCCCeEEEEEccCCCCCCCCE
Q 002281 843 DVLNEVVVDRGSNPYLS--KIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPV 920 (943)
Q Consensus 843 ~ALNEVvI~Rg~~~~l~--~i~v~idg~~v~~~rgDGlIVSTPTGSTAYslSAGGPIV~P~v~~ivlTPIcPhsLs~RPl 920 (943)
+||||++|.++..++++ .++++|||+++++|+||||||||||||||||||||||||+|++++|+|||||||++++|||
T Consensus 145 ~AlNev~i~~~~~~~~~~~~~~v~id~~~~~~~~gDGlIVsTPtGSTAYslSAGGPIv~P~~~~~~vtPi~ph~l~~rpl 224 (305)
T PRK02645 145 YALNDFYLKPASEDRSPTCILELEIDGEVVDQYQGDGLIVSTPTGSTAYTMAAGGPILHPGIDAIIVTPICPMSLSSRPI 224 (305)
T ss_pred EEEeeEEEeccCcccccceEEEEEECCEEEEEEecCEEEEecCCChhhhhhhcCCcccCCCCCeEEEEecCcccccCCCE
Confidence 79999999998877775 5999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCeEEEEEe
Q 002281 921 ILPDSARLELKVK 933 (943)
Q Consensus 921 VLp~~s~I~Iki~ 933 (943)
|||++++|+|++.
T Consensus 225 Vlp~~~~i~i~~~ 237 (305)
T PRK02645 225 VIPPGSRVVIWPL 237 (305)
T ss_pred EECCCCEEEEEEc
Confidence 9999999999864
No 19
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=3.3e-48 Score=414.44 Aligned_cols=201 Identities=25% Similarity=0.396 Sum_probs=176.0
Q ss_pred EEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccccccCccEEEEEcCCchHHHH
Q 002281 692 TVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILHA 771 (943)
Q Consensus 692 ~VlIv~K~~~~~~~~a~~l~~~L~~~~g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIvLGGDGTiL~A 771 (943)
+|+|+.+.+++..+.+.++.+||.+ .|+++ + .+++|++|++|||||||+|
T Consensus 2 ~i~Ii~~~~~~~~~~~~~l~~~l~~-~g~~~--~---------------------------~~~~Dlvi~iGGDGT~L~a 51 (265)
T PRK04885 2 KVAIISNGDPKSKRVASKLKKYLKD-FGFIL--D---------------------------EKNPDIVISVGGDGTLLSA 51 (265)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHH-cCCcc--C---------------------------CcCCCEEEEECCcHHHHHH
Confidence 4889988667788889999999964 35541 0 0257999999999999999
Q ss_pred hhhccC--CCCcEEEEeCCCCcccCCCCchhHHHHHHHHHcCCCCCCceeeeeeeEEEEEEEeCCeecCCccccceeeEE
Q 002281 772 SNLFRG--AVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVV 849 (943)
Q Consensus 772 ar~~~~--~~~PVLGIN~GsLGFLt~~~~ed~~~~L~~ll~G~~~v~~~~i~~R~rL~~~V~r~G~~~~~~~~~ALNEVv 849 (943)
+|.+.+ .++||+|||+|+||||++++++++++.|+++++|+|. ++.|++|++++.++++.. ...+||||++
T Consensus 52 ~~~~~~~~~~iPilGIN~G~lGFL~~~~~~~~~~~l~~i~~g~y~-----i~~r~~L~~~v~~~~~~~--~~~~alNev~ 124 (265)
T PRK04885 52 FHRYENQLDKVRFVGVHTGHLGFYTDWRPFEVDKLVIALAKDPGQ-----VVSYPLLEVKITYEDGEK--EKYLALNEAT 124 (265)
T ss_pred HHHhcccCCCCeEEEEeCCCceecccCCHHHHHHHHHHHHcCCce-----EEEEeeEEEEEEeCCCcE--eeeeeeeeee
Confidence 999987 6899999999999999999999999999999999854 688999999987655432 1257999999
Q ss_pred EecCCCCeeEEEEEEECCEEeEEEeeCeEEeCCCcchHHHhhhcCCCCCCCCCCeEEEEEccCCCCCCC-------CEEe
Q 002281 850 VDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFR-------PVIL 922 (943)
Q Consensus 850 I~Rg~~~~l~~i~v~idg~~v~~~rgDGlIVSTPTGSTAYslSAGGPIV~P~v~~ivlTPIcPhsLs~R-------PlVL 922 (943)
|.++. ++++++++|||+++++|+||||||||||||||||+|||||||+|++++|++||||| ++.| |+||
T Consensus 125 i~~~~--~~~~~~v~id~~~~~~~~gDGlIVsTptGSTAYslSaGGPIv~P~~~~~~ltPI~~--l~~r~~~~~~~plVl 200 (265)
T PRK04885 125 IKRIE--GTLVADVYINGVLFERFRGDGLCVSTPTGSTAYNKSLGGAVLHPSIEALQLTEIAS--INNRVFRTLGSPLIL 200 (265)
T ss_pred eccCC--ceEEEEEEECCEEEEEEEcCEEEEECCCChHHHHhhCCCceeCCCCCeEEEEeecc--ccccccccCCCCEEE
Confidence 99875 68999999999999999999999999999999999999999999999999999997 4444 9999
Q ss_pred cCCCeEEEEEe
Q 002281 923 PDSARLELKVK 933 (943)
Q Consensus 923 p~~s~I~Iki~ 933 (943)
|+++.|+|++.
T Consensus 201 ~~~~~I~i~~~ 211 (265)
T PRK04885 201 PKHHTITLKPV 211 (265)
T ss_pred CCCCEEEEEEc
Confidence 99999999874
No 20
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=100.00 E-value=3.4e-48 Score=416.84 Aligned_cols=236 Identities=36% Similarity=0.606 Sum_probs=194.4
Q ss_pred EEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcC--------CCCccce---eeeccCccccccCccEE
Q 002281 692 TVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARI--------PGFGFVQ---TFYLQDTSDLHERVDFV 759 (943)
Q Consensus 692 ~VlIv~K~~~-~~~~~a~~l~~~L~~~~g~~V~ve~~~~~~~~~~--------~~~~~~~---~~~~~~~~~l~~~~DlV 759 (943)
+|+||.|+.. ++.+.+.++++||.+..++.|+++..+.+.+... ....... ...........+++|+|
T Consensus 1 kVgii~np~~~~~~~~~~~~~~~L~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~i 80 (285)
T PF01513_consen 1 KVGIIANPNKPEAIELANELARWLLEKQGIEVLVEGSIAEDILEAIKKRYEVISVEKKLKTLDDTRNALEEMLEEGVDLI 80 (285)
T ss_dssp -EEEEESSCGHCCCHHHHHHHHHHHHTTTEEEEEEHHHHHSHCCCSHSCCCCCTTSHCCCCTCEEEECCHHHHCCCSSEE
T ss_pred CEEEEEcCCCHHHHHHHHHHHHHHHhCCCEEEEEChHHHHHHHHhccccccccccccccccccccchhhhhhcccCCCEE
Confidence 5899999995 6788999999999865589999988876533210 0000000 01111222346789999
Q ss_pred EEEcCCchHHHHhhhccCCCCcEEEEeCCCCcccCCCCchhHHHHHHHHHcCCCCCCceeeeeeeEEEEEEEeCCe-ecC
Q 002281 760 ACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGK-AMP 838 (943)
Q Consensus 760 IvLGGDGTiL~Aar~~~~~~~PVLGIN~GsLGFLt~~~~ed~~~~L~~ll~G~~~v~~~~i~~R~rL~~~V~r~G~-~~~ 838 (943)
|++|||||+|+++|.+.+..+||+|||+|++|||++++++++.+.++++++|+| .+++|++|++.+.+.+. ..
T Consensus 81 i~lGGDGT~L~~~~~~~~~~~Pilgin~G~lgfl~~~~~~~~~~~l~~~~~g~~-----~~~~r~~l~~~~~~~~~~~~- 154 (285)
T PF01513_consen 81 IVLGGDGTFLRAARLFGDYDIPILGINTGTLGFLTEFEPEDIEEALEKILAGEY-----SIEERMRLEVSVDRKKGAEI- 154 (285)
T ss_dssp EEEESHHHHHHHHHHCTTST-EEEEEESSSSTSSSSEEGCGHHHHHHHHHHTHC-----EEEEEEEEEEEEEETTE-CE-
T ss_pred EEECCCHHHHHHHHHhccCCCcEEeecCCCccccccCCHHHHHHHHHHHhcCCe-----EEEEeeeEEEEEecCCccce-
Confidence 999999999999999998899999999999999999999999999999999985 47899999999988765 11
Q ss_pred CccccceeeEEEecCCCCeeEEEEEEECCEEeEEEeeCeEEeCCCcchHHHhhhcCCCCCCCCCCeEEEEEccCCCCCCC
Q 002281 839 GKVFDVLNEVVVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFR 918 (943)
Q Consensus 839 ~~~~~ALNEVvI~Rg~~~~l~~i~v~idg~~v~~~rgDGlIVSTPTGSTAYslSAGGPIV~P~v~~ivlTPIcPhsLs~R 918 (943)
...+.||||++|.++..+.++++++++|++++++++|||||||||||||||++||||||++|++++|++||||||+++.|
T Consensus 155 ~~~~~alNei~i~~~~~~~~~~~~v~i~~~~~~~~~~dGlivsTptGSTay~lSaGGpiv~p~~~~~~~tpi~p~~~~~r 234 (285)
T PF01513_consen 155 ALIDYALNEIVISRGRASRMIELEVFIDGEFLETYRGDGLIVSTPTGSTAYSLSAGGPIVHPGLDVIILTPICPHSLSNR 234 (285)
T ss_dssp EEEEEESSEEEEEESSTSSEEEEEEEETTEEEEEEEESEEEEEETGGGGTHHHHTT--EE-TTSSEEEEEEESESSTT-S
T ss_pred eeeeeeecCeeEEcCCCccceEEEEEECCEEEEEEEEeeeEEEecCCceEEEEecCccEeccCcceeEEEeccccccCCc
Confidence 13467999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEecCCCeEEEEEe
Q 002281 919 PVILPDSARLELKVK 933 (943)
Q Consensus 919 PlVLp~~s~I~Iki~ 933 (943)
|+|||++++|+|++.
T Consensus 235 piVl~~~~~i~i~~~ 249 (285)
T PF01513_consen 235 PIVLPDDSEIEIKVE 249 (285)
T ss_dssp -EEEETTSEEEEEEE
T ss_pred eEEECCCCEEEEEEe
Confidence 999999999999985
No 21
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=6.3e-47 Score=402.98 Aligned_cols=193 Identities=24% Similarity=0.369 Sum_probs=167.9
Q ss_pred EEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccccccCccEEEEEcCCchHHHH
Q 002281 692 TVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILHA 771 (943)
Q Consensus 692 ~VlIv~K~~~~~~~~a~~l~~~L~~~~g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIvLGGDGTiL~A 771 (943)
++.|+.+..++..+.+.++.+++... ++ ..+.+|+||+||||||||+|
T Consensus 2 ~~~i~~~~~~~s~~~~~~l~~~~~~~-~~-------------------------------~~~~~D~vi~iGGDGT~L~a 49 (259)
T PRK00561 2 KYKIFASTTPQTEPVLPKLKKVLKKK-LA-------------------------------VEDGADYLFVLGGDGFFVST 49 (259)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHhhC-CC-------------------------------ccCCCCEEEEECCcHHHHHH
Confidence 57899999998888888888877421 11 01347999999999999999
Q ss_pred hhhccCCCCcEEEEeCCCCcccCCCCchhHHH-HHHHHHcCCCCCCceeeeeeeEEEEEEEeCCeecCCccccceeeEEE
Q 002281 772 SNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQ-DLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVV 850 (943)
Q Consensus 772 ar~~~~~~~PVLGIN~GsLGFLt~~~~ed~~~-~L~~ll~G~~~v~~~~i~~R~rL~~~V~r~G~~~~~~~~~ALNEVvI 850 (943)
+|.+...++||+|||+|+||||++++++++++ .++++.+ +. ++.|++|++.+ +++ ..+||||++|
T Consensus 50 ~~~~~~~~iPilGIN~G~lGFL~~~~~~~~~~~~~~~l~~--~~-----~~~r~~L~~~~--~~~-----~~~AlNE~vi 115 (259)
T PRK00561 50 AANYNCAGCKVVGINTGHLGFYTSFNETDLDQNFANKLDQ--LK-----FTQIDLLEVQI--DDQ-----IHLVLNELAV 115 (259)
T ss_pred HHHhcCCCCcEEEEecCCCccccccCHHHHHHHHHHHHhh--CC-----eEEEEEEEEEE--CCC-----eeEEEEEEEE
Confidence 99998889999999999999999999999998 6666654 32 47899999987 333 2579999999
Q ss_pred ecCCCCeeEEEEEEECCEEeEEEeeCeEEeCCCcchHHHhhhcCCCCCCCCCCeEEEEEccCCC-----CCCCCEEecCC
Q 002281 851 DRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHS-----LSFRPVILPDS 925 (943)
Q Consensus 851 ~Rg~~~~l~~i~v~idg~~v~~~rgDGlIVSTPTGSTAYslSAGGPIV~P~v~~ivlTPIcPhs-----Ls~RPlVLp~~ 925 (943)
.++. +++++++|||+++++++||||||||||||||||+|||||||+|++++|+|||||||+ +..||+|+|++
T Consensus 116 ~~~~---~~~~~v~idg~~~~~~~gDGlIVsTPtGSTAYslSAGGPIv~P~~~~~~itPI~Ph~~~~~~~~~rplVl~~~ 192 (259)
T PRK00561 116 YTNT---AYPINIFIDNEFWEKYRGSGLLIGPRTGSTALAKSAKGAVIFPRIDVIQIIELNPLLHPNQTTIQSPIILPID 192 (259)
T ss_pred ccCC---ceEEEEEECCEEEEEEecCEEEEeCchHHHHHHHhCCCCccCCCCCeEEEEeeCCCCcccccccCCCeEECCC
Confidence 9765 679999999999999999999999999999999999999999999999999999998 55799999999
Q ss_pred CeEEEEEe
Q 002281 926 ARLELKVK 933 (943)
Q Consensus 926 s~I~Iki~ 933 (943)
+.|+|++.
T Consensus 193 ~~I~i~~~ 200 (259)
T PRK00561 193 TKVEFEIK 200 (259)
T ss_pred CEEEEEEc
Confidence 99999875
No 22
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=100.00 E-value=7.8e-47 Score=402.02 Aligned_cols=210 Identities=28% Similarity=0.393 Sum_probs=181.7
Q ss_pred EEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccccccCccEEEEEcCCchHHHH
Q 002281 692 TVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILHA 771 (943)
Q Consensus 692 ~VlIv~K~~~~~~~~a~~l~~~L~~~~g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIvLGGDGTiL~A 771 (943)
+++|++|+. ..+.+.++.+||.+ .|+.+.++++.. ....++|+||++|||||||+|
T Consensus 2 ~~~~~~~~~--~~~~~~~~~~~l~~-~~~~~~~~~~~~---------------------~~~~~~d~vi~iGGDGT~L~a 57 (256)
T PRK14075 2 KLGIFYREE--KEKEAKFLKEKISK-EHEVVEFCEASA---------------------SGKVTADLIIVVGGDGTVLKA 57 (256)
T ss_pred EEEEEeCcc--HHHHHHHHHHHHHH-cCCeeEeecccc---------------------cccCCCCEEEEECCcHHHHHH
Confidence 467776655 55778899999965 577777654421 112467999999999999999
Q ss_pred hhhccCCCCcEEEEeCCCCcccCCCCchhHHHHHHHHHcCCCCCCceeeeeeeEEEEEEEeCCeecCCccccceeeEEEe
Q 002281 772 SNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVVD 851 (943)
Q Consensus 772 ar~~~~~~~PVLGIN~GsLGFLt~~~~ed~~~~L~~ll~G~~~v~~~~i~~R~rL~~~V~r~G~~~~~~~~~ALNEVvI~ 851 (943)
+|.+ ++||+|||+|+||||++++++++++.|+++++|+| .++.|++|++++. ++ .++||||++|.
T Consensus 58 ~~~~---~~Pilgin~G~lGfl~~~~~~~~~~~l~~~~~g~~-----~~~~r~~l~~~~~-~~------~~~alNev~i~ 122 (256)
T PRK14075 58 AKKV---GTPLVGFKAGRLGFLSSYTLEEIDRFLEDLKNWNF-----REEKRWFLKIESE-LG------NHLALNDVTLE 122 (256)
T ss_pred HHHc---CCCEEEEeCCCCccccccCHHHHHHHHHHHHcCCc-----EEEEeeEEEEEEc-CC------cEEEEEEEEEe
Confidence 9998 78999999999999999999999999999999985 4688999999873 22 25799999999
Q ss_pred cCCCCeeEEEEEEECCEEeEEEeeCeEEeCCCcchHHHhhhcCCCCCCCCCCeEEEEEccCCCCCCCCEEecCCCeEEEE
Q 002281 852 RGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSARLELK 931 (943)
Q Consensus 852 Rg~~~~l~~i~v~idg~~v~~~rgDGlIVSTPTGSTAYslSAGGPIV~P~v~~ivlTPIcPhsLs~RPlVLp~~s~I~Ik 931 (943)
++.+++++++++++||+.+.+|+||||||||||||||||+|||||||+|+++++++||||||+++.||+|+|++++|+|+
T Consensus 123 ~~~~~~~~~~~v~i~~~~~~~~~~DG~ivsTptGSTaY~lSaGGpiv~p~~~~l~ItPI~Ph~L~~rpiVlp~~~~I~I~ 202 (256)
T PRK14075 123 RDPSQKMVEIEVSFEDHSSMWFFADGVVISTPTGSTAYSLSLGGPIILPNCEVFEITPIAPQFLATRSIVIPSNEKVTVE 202 (256)
T ss_pred cCCCCcEEEEEEEECCEEEEEEecCEEEEeCCCchHHHHhhCCCceeCCCCCeEEeeeeehhhcCCCceEcCCCCEEEEE
Confidence 99989999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred Ee---ccccccc
Q 002281 932 VK---LLLFFGT 940 (943)
Q Consensus 932 i~---~~~~~~~ 940 (943)
+. ....||.
T Consensus 203 ~~~~~~l~iDGe 214 (256)
T PRK14075 203 SQRDINLIVDGV 214 (256)
T ss_pred ECCceEEEECCC
Confidence 75 3344554
No 23
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=100.00 E-value=1.2e-44 Score=382.99 Aligned_cols=167 Identities=28% Similarity=0.423 Sum_probs=145.5
Q ss_pred cCccEEEEEcCCchHHHHhhhccCCCCcEEEEeCCCCcccCC-CCchhHHHHHHHHHcCCCCCCceeeeeeeEEEEEEEe
Q 002281 754 ERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTS-HPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFR 832 (943)
Q Consensus 754 ~~~DlVIvLGGDGTiL~Aar~~~~~~~PVLGIN~GsLGFLt~-~~~ed~~~~L~~ll~G~~~v~~~~i~~R~rL~~~V~r 832 (943)
+++|+||+||||||||+|+|.+....+||+|||+|+||||++ ++++++.+.|+++..+. +..|++ ++. ..
T Consensus 24 ~~~Dlvi~iGGDGTlL~a~~~~~~~~~PvlGIN~G~lGFL~~~~~~~e~~~~l~~~~~~~-------~~~l~~-~~~-~~ 94 (246)
T PRK04761 24 EEADVIVALGGDGFMLQTLHRYMNSGKPVYGMNRGSVGFLMNEYSEDDLLERIAAAEPTV-------LHPLRM-TAT-DV 94 (246)
T ss_pred ccCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCCCCcccCCCCHHHHHHHHHHhhcCc-------EEEEEE-EEE-EC
Confidence 357999999999999999999988899999999999999996 88999999999887653 223333 332 22
Q ss_pred CCeecCCccccceeeEEEecCCCCeeEEEEEEECCEE-eEEEeeCeEEeCCCcchHHHhhhcCCCCCCCCCCeEEEEEcc
Q 002281 833 NGKAMPGKVFDVLNEVVVDRGSNPYLSKIECYEHDRL-ITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPIC 911 (943)
Q Consensus 833 ~G~~~~~~~~~ALNEVvI~Rg~~~~l~~i~v~idg~~-v~~~rgDGlIVSTPTGSTAYslSAGGPIV~P~v~~ivlTPIc 911 (943)
+|+. ...+||||++|.|+. .++++++++|||++ +.+++||||||||||||||||+|||||||+|++++|++||||
T Consensus 95 ~~~~---~~~~ALNev~i~~~~-~~~~~~~v~idg~~~~~~~~gDGlIVSTPtGSTAY~lSAGGPIv~P~~~~~~itPI~ 170 (246)
T PRK04761 95 SGEV---HEALAINEVSLFRQT-RQAAKLRISIDGKVRMEELVCDGVLVATPAGSTAYNLSAHGPILPLGSNLLALTPIS 170 (246)
T ss_pred CCcE---eeeeeeeheeeecCC-CceEEEEEEECCEEEEEEEecCeEEEeCCcCHHHHHhhCCCcccCCCCCeEEEEeec
Confidence 3432 135799999999987 67999999999996 999999999999999999999999999999999999999999
Q ss_pred CCCCC-CCCEEecCCCeEEEEEe
Q 002281 912 PHSLS-FRPVILPDSARLELKVK 933 (943)
Q Consensus 912 PhsLs-~RPlVLp~~s~I~Iki~ 933 (943)
||++. +||+|||+++.|+|++.
T Consensus 171 P~~~~~~RplVlp~~~~I~i~~~ 193 (246)
T PRK04761 171 PFRPRRWRGALLPNSATVRFDVL 193 (246)
T ss_pred ccCCcCCccEEECCCCEEEEEEe
Confidence 99986 99999999999999875
No 24
>PLN02929 NADH kinase
Probab=100.00 E-value=2.5e-43 Score=381.58 Aligned_cols=204 Identities=24% Similarity=0.368 Sum_probs=174.8
Q ss_pred HHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccccccCccEEEEEcCCchHHHHhhhccCCCCcEE
Q 002281 704 MEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVI 783 (943)
Q Consensus 704 ~~~a~~l~~~L~~~~g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIvLGGDGTiL~Aar~~~~~~~PVL 783 (943)
...+..+.+||.+ .|+++...... +..+...++|+||+||||||||+|+|.+ ...+||+
T Consensus 33 ~~~~~~~~~~L~~-~gi~~~~v~r~-------------------~~~~~~~~~Dlvi~lGGDGT~L~aa~~~-~~~iPvl 91 (301)
T PLN02929 33 KDTVNFCKDILQQ-KSVDWECVLRN-------------------ELSQPIRDVDLVVAVGGDGTLLQASHFL-DDSIPVL 91 (301)
T ss_pred HHHHHHHHHHHHH-cCCEEEEeecc-------------------ccccccCCCCEEEEECCcHHHHHHHHHc-CCCCcEE
Confidence 4456788888864 57776421110 0012235789999999999999999999 7889999
Q ss_pred EEeCC------------------CCcccCCCCchhHHHHHHHHHcCCCCCCceeeeeeeEEEEEEEeCCeecCCccccce
Q 002281 784 SFNLG------------------SLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVL 845 (943)
Q Consensus 784 GIN~G------------------sLGFLt~~~~ed~~~~L~~ll~G~~~v~~~~i~~R~rL~~~V~r~G~~~~~~~~~AL 845 (943)
|||+| ++||||+++++++++.|+++++|+|. ++.|+||++++ +|+.. ..+||
T Consensus 92 GIN~Gp~~~~~~~~~~~~~~~~r~lGfL~~~~~~~~~~~L~~il~g~~~-----~~~r~~L~~~v--~g~~~---~~~AL 161 (301)
T PLN02929 92 GVNSDPTQKDEVEEYSDEFDARRSTGHLCAATAEDFEQVLDDVLFGRLK-----PTELSRISTVV--NGTLL---ETPAL 161 (301)
T ss_pred EEECCCcccccccccccccccccCccccccCCHHHHHHHHHHHHcCCce-----EEEeeeEEEEe--cCCcc---cceEe
Confidence 99999 79999999999999999999999854 68999999998 45433 13799
Q ss_pred eeEEEecCCCCeeEEEEEEEC-----CEEeEEEeeCeEEeCCCcchHHHhhhcCC---CCCCCCCCeEEEEEccCCCCCC
Q 002281 846 NEVVVDRGSNPYLSKIECYEH-----DRLITKVQGDGVIVATPTGSTAYSTAAGG---SMVHPNVPCMLFTPICPHSLSF 917 (943)
Q Consensus 846 NEVvI~Rg~~~~l~~i~v~id-----g~~v~~~rgDGlIVSTPTGSTAYslSAGG---PIV~P~v~~ivlTPIcPhsLs~ 917 (943)
||++|.++.+++++++++++| |+++.+++|||||||||||||||++|||| ||++|++++|++||||||+ +.
T Consensus 162 NEv~I~~~~~~~~~~~~v~i~~~g~~~~~~~~~~~DGliVsTpTGSTAY~lSAGG~i~Piv~P~l~~~vltPI~Ph~-~~ 240 (301)
T PLN02929 162 NDVLIAHPSPAAVSRFSFRVGRQGGSSGPLINVRSSGLRVSTAAGSTAAMLSAGGFPMPLLSRDLQYMVREPISPGH-PP 240 (301)
T ss_pred eEEEEccCCCccEEEEEEEEcCccCCCceeEEeecCcEEEeCCccHHHHHHhcCCCCCCCCCcccceEEEEeeCCCC-CC
Confidence 999999999999999999999 88999999999999999999999999999 8899999999999999999 99
Q ss_pred CCE---EecCCCeEEEEEe----cccccc
Q 002281 918 RPV---ILPDSARLELKVK----LLLFFG 939 (943)
Q Consensus 918 RPl---VLp~~s~I~Iki~----~~~~~~ 939 (943)
||+ |++++++|+|++. ...+||
T Consensus 241 r~l~~~vv~~~~~i~i~~~~~~~~i~iDG 269 (301)
T PLN02929 241 KSLMHGFYKPGQHMQVRWNSRKGTIYIDG 269 (301)
T ss_pred CCccccEECCCCeEEEEEeCCCEEEEECC
Confidence 999 9999999999873 345666
No 25
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=99.88 E-value=1e-22 Score=202.56 Aligned_cols=132 Identities=23% Similarity=0.286 Sum_probs=84.1
Q ss_pred CceeeeccCCccccccCCCcceEEEcCC---CCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEe
Q 002281 247 NWSPVYLSNSKDDIASKDSEVTFCRGGQ---VTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIP 323 (943)
Q Consensus 247 Nwr~V~l~~~~d~~~~~~~e~~LYRSGq---pT~eDLa~Lk~lGIKTVIDLRse~~ee~~~~a~e~e~~e~~GI~yIhIP 323 (943)
|||++++-++.+ +.......||||+. +|++|++.|.++||+||||||++. |.... ......|++++|+|
T Consensus 1 N~RDlGg~~~~~--g~~ir~g~lyRS~~l~~lt~~d~~~L~~lgI~tIiDLRs~~-E~~~~-----p~~~~~g~~~~~~p 72 (164)
T PF13350_consen 1 NFRDLGGYPTAD--GRRIRPGRLYRSGNLSNLTEADLERLRELGIRTIIDLRSPT-ERERA-----PDPLIDGVQYVHIP 72 (164)
T ss_dssp S-EEGGGTST------TS-TTSEEEES--TT--HHHHHHHHHTT--EEEE-S-HH-HHHHH-----S----TT-EEEE--
T ss_pred CccccCCCCccc--eeeecCCcEEecCCcCcCCHHHHHHHHhCCCCEEEECCCcc-ccccC-----CCCCcCCceeeeec
Confidence 788887666544 34555679999995 579999999999999999999986 21111 12344599999999
Q ss_pred cCCCCCCC-----------------------------HHHHHHHHHHHhcCCCCcEEEeCccCCchHHHHHHHHHHhcCC
Q 002281 324 VEVRTAPT-----------------------------MEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMAR 374 (943)
Q Consensus 324 V~d~~~Ps-----------------------------~E~v~aFlelL~ds~~~PVLVHC~AGKDRTGALvaLlr~~lGv 374 (943)
+....... .+.+.++++++.+.. +|+||||++||||||+++++++.++||
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~~~~~~l~~~~-~p~l~HC~aGKDRTG~~~alll~~lGV 151 (164)
T PF13350_consen 73 IFGDDASSPDKLAELLQSSADAPRGMLEFYREMLESYAEAYRKIFELLADAP-GPVLFHCTAGKDRTGVVAALLLSLLGV 151 (164)
T ss_dssp SS-S-TTH----------HHHHHHHHHHHHHHGGGSTHHHHHHHHHHHH-TT---EEEE-SSSSSHHHHHHHHHHHHTT-
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHHHhhhHHHHHHHHHhccCC-CcEEEECCCCCccHHHHHHHHHHHcCC
Confidence 98544331 134456677776555 799999999999999999999999999
Q ss_pred CHHHHHHHhhccc
Q 002281 375 CASQISGQTITSN 387 (943)
Q Consensus 375 s~edAiaDYLlsn 387 (943)
+.++|++||++||
T Consensus 152 ~~~~I~~DY~lSn 164 (164)
T PF13350_consen 152 PDEDIIADYLLSN 164 (164)
T ss_dssp -HHHHHHHHHGGG
T ss_pred CHHHHHHHHHhcC
Confidence 9999999999997
No 26
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=99.83 E-value=2.9e-20 Score=187.03 Aligned_cols=122 Identities=23% Similarity=0.262 Sum_probs=87.4
Q ss_pred CCCceeeeccCCccccccCCCcceEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEec
Q 002281 245 FANWSPVYLSNSKDDIASKDSEVTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPV 324 (943)
Q Consensus 245 iaNwr~V~l~~~~d~~~~~~~e~~LYRSGqpT~eDLa~Lk~lGIKTVIDLRse~~ee~~~~a~e~e~~e~~GI~yIhIPV 324 (943)
..||..|. ..+||||+|++.++.+|+++|+||||+||++. . . .....+++..||+++|+++
T Consensus 4 P~nF~~V~--------------~~vYRS~~P~~~n~~fL~~L~LKTII~L~~e~--~-~--~~~~~f~~~~~I~l~~~~~ 64 (164)
T PF03162_consen 4 PLNFGMVE--------------PGVYRSAQPTPANFPFLERLGLKTIINLRPEP--P-S--QDFLEFAEENGIKLIHIPM 64 (164)
T ss_dssp -TT-EEEE--------------TTEEEESS--HHHHHHHHHHT-SEEEE--SS--------HHHHHHHHHTT-EEEE---
T ss_pred CccccCCC--------------CCccCCCCCChhhHHHHHHCCCceEEEecCCC--C-C--HHHHHHHhhcCceEEEecc
Confidence 45788775 37999999999999999999999999999875 1 1 1334578999999999999
Q ss_pred CCCCC----CCHHHHHHHHHHHhcCCCCcEEEeCccCCchHHHHHHHHHHhcCCCHHHHHHHhhc
Q 002281 325 EVRTA----PTMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMARCASQISGQTIT 385 (943)
Q Consensus 325 ~d~~~----Ps~E~v~aFlelL~ds~~~PVLVHC~AGKDRTGALvaLlr~~lGvs~edAiaDYLl 385 (943)
..... ++.+.+.++++++.+..++||||||..|+||||++++|+|.+.||+.+.|+++|-.
T Consensus 65 ~~~~~~~~~~~~~~v~~aL~~ild~~n~PvLiHC~~G~~rTG~vvg~lRk~Q~W~~~~i~~Ey~~ 129 (164)
T PF03162_consen 65 SSSKDPWVPISEEQVAEALEIILDPRNYPVLIHCNHGKDRTGLVVGCLRKLQGWSLSSIFDEYRR 129 (164)
T ss_dssp ----GGG----HHHHHHHHHHHH-GGG-SEEEE-SSSSSHHHHHHHHHHHHTTB-HHHHHHHHHH
T ss_pred ccccCccccCCHHHHHHHHHHHhCCCCCCEEEEeCCCCcchhhHHHHHHHHcCCCHHHHHHHHHH
Confidence 86554 56888988988877888999999999999999999999999999999999999874
No 27
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=99.81 E-value=1.8e-19 Score=175.36 Aligned_cols=113 Identities=19% Similarity=0.242 Sum_probs=95.7
Q ss_pred ceEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchh--hhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhc
Q 002281 267 VTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYE--AAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSN 344 (943)
Q Consensus 267 ~~LYRSGqpT~eDLa~Lk~lGIKTVIDLRse~~ee~~~~--a~e~e~~e~~GI~yIhIPV~d~~~Ps~E~v~aFlelL~d 344 (943)
..+|||+|++++|++.|+++|||||||||++. |....+ ..+.+.++..|++|+|+|+.. ..++++++.+|.+++.
T Consensus 7 ~~~~~s~qlt~~d~~~L~~~GiktVIdlR~~~-E~~~~p~~~~~~~~a~~~gl~y~~iPv~~-~~~~~~~v~~f~~~~~- 83 (135)
T TIGR01244 7 EHLYVSPQLTKADAAQAAQLGFKTVINNRPDR-EEESQPDFAQIKAAAEAAGVTYHHQPVTA-GDITPDDVETFRAAIG- 83 (135)
T ss_pred CCeeEcCCCCHHHHHHHHHCCCcEEEECCCCC-CCCCCCCHHHHHHHHHHCCCeEEEeecCC-CCCCHHHHHHHHHHHH-
Confidence 47999999999999999999999999999986 222222 123345677899999999985 4579999999999995
Q ss_pred CCCCcEEEeCccCCchHHHHHHHHHHhcCCCHHHHHHHh
Q 002281 345 SSKKPLYLHSKEGVWRTYAMVSRWRQYMARCASQISGQT 383 (943)
Q Consensus 345 s~~~PVLVHC~AGKDRTGALvaLlr~~lGvs~edAiaDY 383 (943)
..++|||+||++|| |||+++++++...|++.++|+++-
T Consensus 84 ~~~~pvL~HC~sG~-Rt~~l~al~~~~~g~~~~~i~~~~ 121 (135)
T TIGR01244 84 AAEGPVLAYCRSGT-RSSLLWGFRQAAEGVPVEEIVRRA 121 (135)
T ss_pred hCCCCEEEEcCCCh-HHHHHHHHHHHHcCCCHHHHHHHH
Confidence 56799999999999 999999999888899999998864
No 28
>KOG4180 consensus Predicted kinase [General function prediction only]
Probab=99.73 E-value=3.4e-18 Score=184.39 Aligned_cols=136 Identities=29% Similarity=0.332 Sum_probs=113.8
Q ss_pred ccCccEEEEEcCCchHHHHhhhccCCCCcEEEEeC---CCCcccCC--CCchhHHHHHHHHHcCCCCCCceeeeeeeEEE
Q 002281 753 HERVDFVACLGGDGVILHASNLFRGAVPPVISFNL---GSLGFLTS--HPFEDYRQDLRQVIYGNNTLDGVYITLRMRLC 827 (943)
Q Consensus 753 ~~~~DlVIvLGGDGTiL~Aar~~~~~~~PVLGIN~---GsLGFLt~--~~~ed~~~~L~~ll~G~~~v~~~~i~~R~rL~ 827 (943)
..++|+||++|||||||.|++.+.+..+||+|||. |+-|.||- ..+++...+|.++..|++.| ..|.|++
T Consensus 103 i~waD~VisvGGDGTfL~Aasrv~~~~~PViGvNtDP~~Seg~lcL~~~~~~n~~~al~k~~sgnF~w-----v~r~rir 177 (395)
T KOG4180|consen 103 IRWADMVISVGGDGTFLLAASRVIDDSKPVIGVNTDPTGSEGHLCLPDKYPSNPAGALCKLTSGNFEW-----VLRQRIR 177 (395)
T ss_pred CchhhEEEEecCccceeehhhhhhccCCceeeecCCCCcCcceEeccccCCCCcHHHHHHHHhccHHH-----hhhheeE
Confidence 57899999999999999999988888899999997 77787773 33477889999999999876 5677888
Q ss_pred EEEEeC-CeecC---------------------------------CccccceeeEEEecCCCCeeEEEEEEECCEEeEEE
Q 002281 828 CEIFRN-GKAMP---------------------------------GKVFDVLNEVVVDRGSNPYLSKIECYEHDRLITKV 873 (943)
Q Consensus 828 ~~V~r~-G~~~~---------------------------------~~~~~ALNEVvI~Rg~~~~l~~i~v~idg~~v~~~ 873 (943)
.+|..+ |...+ .-.+.|||||.|....+++.+.|++.||+....++
T Consensus 178 ~tv~g~~gip~p~dlh~~q~s~nqr~sa~~i~~~~~s~sea~~~~~LpvlALNEVfIgE~lsarVS~y~i~idd~~~~Kq 257 (395)
T KOG4180|consen 178 GTVVGDDGIPDPIDLHDQQLSDNQRSSAKEIEETLLSHSEAVEIVALPVLALNEVFIGESLSARVSYYEISIDDKDGVKQ 257 (395)
T ss_pred EEEecCCCCCCchhhhhhhhccccccchhhHHHHHHhhhhhccccccchhhhcceeecCcccccceeEEEEecCcccccc
Confidence 777632 21000 01245899999999999999999999999999999
Q ss_pred eeCeEEeCCCcchHHHhhhc
Q 002281 874 QGDGVIVATPTGSTAYSTAA 893 (943)
Q Consensus 874 rgDGlIVSTPTGSTAYslSA 893 (943)
++.|++|||.||||+|+++.
T Consensus 258 Kssgl~vctgTGstsw~~~i 277 (395)
T KOG4180|consen 258 KSSGLVVCTGTGSTSWTFNI 277 (395)
T ss_pred cCCCeeEecCCCcceEeecc
Confidence 99999999999999999865
No 29
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=99.72 E-value=1.8e-17 Score=157.14 Aligned_cols=100 Identities=28% Similarity=0.383 Sum_probs=73.1
Q ss_pred ceEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcc--hhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhc
Q 002281 267 VTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNF--YEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSN 344 (943)
Q Consensus 267 ~~LYRSGqpT~eDLa~Lk~lGIKTVIDLRse~~ee~~--~~a~e~e~~e~~GI~yIhIPV~d~~~Ps~E~v~aFlelL~d 344 (943)
..||.||||+++|++.|+++|||||||||++. |++. ....+.+.++..|++|+|+||. ...++.+++.+|.++++
T Consensus 7 ~~~~vs~Q~~~~d~~~la~~GfktVInlRpd~-E~~~qp~~~~~~~~a~~~Gl~y~~iPv~-~~~~~~~~v~~f~~~l~- 83 (110)
T PF04273_consen 7 DDLSVSGQPSPEDLAQLAAQGFKTVINLRPDG-EEPGQPSSAEEAAAAEALGLQYVHIPVD-GGAITEEDVEAFADALE- 83 (110)
T ss_dssp TTEEEECS--HHHHHHHHHCT--EEEE-S-TT-STTT-T-HHCHHHHHHHCT-EEEE-----TTT--HHHHHHHHHHHH-
T ss_pred CCeEECCCCCHHHHHHHHHCCCcEEEECCCCC-CCCCCCCHHHHHHHHHHcCCeEEEeecC-CCCCCHHHHHHHHHHHH-
Confidence 47999999999999999999999999999986 2222 2234667899999999999999 46789999999999995
Q ss_pred CCCCcEEEeCccCCchHHHHHHHHHH
Q 002281 345 SSKKPLYLHSKEGVWRTYAMVSRWRQ 370 (943)
Q Consensus 345 s~~~PVLVHC~AGKDRTGALvaLlr~ 370 (943)
..++|||+||++|. |+++||+|...
T Consensus 84 ~~~~Pvl~hC~sG~-Ra~~l~~l~~~ 108 (110)
T PF04273_consen 84 SLPKPVLAHCRSGT-RASALWALAQA 108 (110)
T ss_dssp TTTTSEEEE-SCSH-HHHHHHHHHHH
T ss_pred hCCCCEEEECCCCh-hHHHHHHHHhh
Confidence 56789999999999 99999999864
No 30
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.62 E-value=3.3e-15 Score=142.58 Aligned_cols=111 Identities=19% Similarity=0.253 Sum_probs=98.7
Q ss_pred ceEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchh--hhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhc
Q 002281 267 VTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYE--AAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSN 344 (943)
Q Consensus 267 ~~LYRSGqpT~eDLa~Lk~lGIKTVIDLRse~~ee~~~~--a~e~e~~e~~GI~yIhIPV~d~~~Ps~E~v~aFlelL~d 344 (943)
..++.|||++++|+..++.+|||+|||.|++. |++.-| +.++.+++..|+.|.|+||. ...+++++++.|.+.+ +
T Consensus 8 d~lsVsgQi~~~D~~~iaa~GFksiI~nRPDg-Ee~~QP~~~~i~~aa~~aGl~y~~iPV~-~~~iT~~dV~~f~~Al-~ 84 (130)
T COG3453 8 DRLSVSGQISPADIASIAALGFKSIICNRPDG-EEPGQPGFAAIAAAAEAAGLTYTHIPVT-GGGITEADVEAFQRAL-D 84 (130)
T ss_pred cceeecCCCCHHHHHHHHHhccceecccCCCC-CCCCCCChHHHHHHHHhcCCceEEeecC-CCCCCHHHHHHHHHHH-H
Confidence 47899999999999999999999999999996 333222 46778899999999999998 5688999999999999 5
Q ss_pred CCCCcEEEeCccCCchHHHHHHHHHHhcCCCHHHHHH
Q 002281 345 SSKKPLYLHSKEGVWRTYAMVSRWRQYMARCASQISG 381 (943)
Q Consensus 345 s~~~PVLVHC~AGKDRTGALvaLlr~~lGvs~edAia 381 (943)
...+|||.||++|. |+-++|.+-....|++.+++.+
T Consensus 85 eaegPVlayCrsGt-Rs~~ly~~~~~~~gm~~de~~a 120 (130)
T COG3453 85 EAEGPVLAYCRSGT-RSLNLYGLGELDGGMSRDEIEA 120 (130)
T ss_pred HhCCCEEeeecCCc-hHHHHHHHHHHhcCCCHHHHHH
Confidence 78899999999999 9999999998778999999865
No 31
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=99.47 E-value=5.2e-14 Score=150.36 Aligned_cols=157 Identities=15% Similarity=0.133 Sum_probs=116.5
Q ss_pred cceEEEcCCCCHhhHH--HHHHcCCcEEEEcCCCc-ccCcchhhhhHH-hhhcCCcEEEEEecCCCCCCCHHHHHHHHHH
Q 002281 266 EVTFCRGGQVTEEGLK--WLMEKGYKTIVDIRAER-VKDNFYEAAIDD-AILSGKVELIKIPVEVRTAPTMEQVEKFASL 341 (943)
Q Consensus 266 e~~LYRSGqpT~eDLa--~Lk~lGIKTVIDLRse~-~ee~~~~a~e~e-~~e~~GI~yIhIPV~d~~~Ps~E~v~aFlel 341 (943)
.+..|||++|.+.+.. ++..++++|+++|+.+. .....+. .+.. .....++.....+.........+.+..++.+
T Consensus 52 ~~~~~Rs~~p~~~~~~~~~~~~~~l~~~i~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l 130 (249)
T COG2365 52 PIIDYRSGQPVPVQPDPELLDALYLKTIINLRDESNTNVELYT-DHLINWDKAAIIMFESYRSFPTREDAAERLVELLQL 130 (249)
T ss_pred ceeEcCCCCcccccCCccccccccccccccccccchhhhhhhh-hhhhhhccccchhhhhhccCccchhhHHHHHHHHHH
Confidence 3578999999877766 78888999999999722 0111111 1111 1234555666666666667778888888888
Q ss_pred HhcCCCCcEEEeCccCCchHHHHHHHHHHhcCCCHHHHHHHhhccccccccchHHH------------hhh---------
Q 002281 342 VSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMARCASQISGQTITSNDVLLKDSTRT------------RKL--------- 400 (943)
Q Consensus 342 L~ds~~~PVLVHC~AGKDRTGALvaLlr~~lGvs~edAiaDYLlsn~~~~~~~e~~------------r~~--------- 400 (943)
+.+..++|||+||++||||||++++|++.++|++.+++++||+.+|.+......+. ++.
T Consensus 131 ~~~~e~~PvL~HC~~GkdRTGl~~al~r~~~~~~~~~v~~dyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (249)
T COG2365 131 LADAENGPVLIHCTAGKDRTGLVAALYRKLVGGSDETVAADYLLTNRYGEPERRGILEYVSEKLLDDLEKKLQTFSLTLA 210 (249)
T ss_pred HhhcccCCEEEecCCCCcchHHHHHHHHHHhCCchhHHHHHHHHcCCccchhhHHHHHHHhhccccchhcccchhHHHHH
Confidence 87666799999999999999999999999999999999999999999988666533 111
Q ss_pred ---hhchhhhhhhhhccchhhhHhhh
Q 002281 401 ---KASAGKFLLEEKYETVKENQDEI 423 (943)
Q Consensus 401 ---~m~a~~~~l~~~~g~~e~~~~~~ 423 (943)
...+..+.++++||+.++|+.+-
T Consensus 211 ~~~y~~~a~~~~~~~~gs~~~~l~~~ 236 (249)
T COG2365 211 SDEYLFAAFDELDEQYGSLDGYLADK 236 (249)
T ss_pred hHHHHHHHHHHHHHHHccccccchhh
Confidence 13455567788899999888643
No 32
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=99.47 E-value=2.6e-13 Score=130.31 Aligned_cols=107 Identities=10% Similarity=0.138 Sum_probs=82.9
Q ss_pred ceEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCC-CCCCHHHHHHHHHHHh--
Q 002281 267 VTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVR-TAPTMEQVEKFASLVS-- 343 (943)
Q Consensus 267 ~~LYRSGqpT~eDLa~Lk~lGIKTVIDLRse~~ee~~~~a~e~e~~e~~GI~yIhIPV~d~-~~Ps~E~v~aFlelL~-- 343 (943)
+.||+|++++..++++|+++||++||||+.+. .. + ...|++|+|+|+.|. ..+..+.+....++++
T Consensus 6 ~~l~~G~~~~~~~~~~l~~~gi~~Vi~l~~~~--~~-~--------~~~~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~ 74 (138)
T smart00195 6 PHLYLGSYSSALNLALLKKLGITHVINVTNEV--PN-L--------NKKGFTYLGVPILDNTETKISPYFPEAVEFIEDA 74 (138)
T ss_pred CCeEECChhHcCCHHHHHHcCCCEEEEccCCC--CC-C--------CCCCCEEEEEECCCCCCCChHHHHHHHHHHHHHH
Confidence 36999999999999999999999999998865 11 1 246899999999973 3334455554444443
Q ss_pred cCCCCcEEEeCccCCchHHHHHHHHHHh-cCCCHHHHHHHhh
Q 002281 344 NSSKKPLYLHSKEGVWRTYAMVSRWRQY-MARCASQISGQTI 384 (943)
Q Consensus 344 ds~~~PVLVHC~AGKDRTGALvaLlr~~-lGvs~edAiaDYL 384 (943)
...++||||||.+|.+|||+++++|+.. .|++.++|++..-
T Consensus 75 ~~~~~~VlVHC~~G~~RS~~v~~~yl~~~~~~~~~~A~~~v~ 116 (138)
T smart00195 75 EKKGGKVLVHCQAGVSRSATLIIAYLMKYRNLSLNDAYDFVK 116 (138)
T ss_pred hcCCCeEEEECCCCCchHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 2457899999999999999888877554 6999999988543
No 33
>KOG1572 consensus Predicted protein tyrosine phosphatase [Defense mechanisms]
Probab=99.46 E-value=3.4e-13 Score=141.66 Aligned_cols=123 Identities=22% Similarity=0.277 Sum_probs=104.8
Q ss_pred CCCCceeeeccCCccccccCCCcceEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEe
Q 002281 244 LFANWSPVYLSNSKDDIASKDSEVTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIP 323 (943)
Q Consensus 244 ~iaNwr~V~l~~~~d~~~~~~~e~~LYRSGqpT~eDLa~Lk~lGIKTVIDLRse~~ee~~~~a~e~e~~e~~GI~yIhIP 323 (943)
..-||..|. ..|||||.|.+..+.+|+.+++|+||.|+++. |+.....+++..+|+++||-
T Consensus 56 pPlnFs~V~--------------~~lyRSg~P~~~NfsFL~~L~LksIisL~pE~-----yp~~nl~f~~~~~Ik~~~i~ 116 (249)
T KOG1572|consen 56 PPLNFSMVD--------------NGLYRSGFPRPENFSFLKTLHLKSIISLCPEP-----YPEENLNFLESNGIKLYQIG 116 (249)
T ss_pred CCccccccc--------------cceeecCCCCccchHHHHHhhhheEEEecCCC-----CChHHHHHHHhcCceEEEEe
Confidence 345777775 27999999999999999999999999999875 33345568999999999999
Q ss_pred cCCCC----CC----CHHHHHHHHHHHhcCCCCcEEEeCccCCchHHHHHHHHHHhcCCCHHHHHHHhhc
Q 002281 324 VEVRT----AP----TMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMARCASQISGQTIT 385 (943)
Q Consensus 324 V~d~~----~P----s~E~v~aFlelL~ds~~~PVLVHC~AGKDRTGALvaLlr~~lGvs~edAiaDYLl 385 (943)
|.... .| ..+.+...++++.+..++|+|+||+.||+|||++++|+|.+++|+..-++++|+.
T Consensus 117 ie~~k~~~k~P~~~~~~~~i~~~l~~lld~~N~P~Lihc~rGkhRtg~lVgclRklq~W~lssil~Ey~~ 186 (249)
T KOG1572|consen 117 IEGEKDNKKEPFVNIPDHSIRKALKVLLDKRNYPILIHCKRGKHRTGCLVGCLRKLQNWSLSSILDEYLR 186 (249)
T ss_pred cccccccccCCCCCChHHHHHHHHHHHhcccCCceEEecCCCCcchhhhHHHHHHHhccchhHHHHHHHH
Confidence 98655 23 2456777777777899999999999999999999999999999999999999984
No 34
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=99.42 E-value=1.1e-12 Score=124.98 Aligned_cols=109 Identities=9% Similarity=0.168 Sum_probs=83.9
Q ss_pred ceEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCC-HHHHHHHHHHHhc-
Q 002281 267 VTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPT-MEQVEKFASLVSN- 344 (943)
Q Consensus 267 ~~LYRSGqpT~eDLa~Lk~lGIKTVIDLRse~~ee~~~~a~e~e~~e~~GI~yIhIPV~d~~~Ps-~E~v~aFlelL~d- 344 (943)
+.||+|+++...+++.|+++||++||||+.+. +. +.....|++|+|+|+.++..+. ...+..+.+++..
T Consensus 7 ~~l~~g~~~~~~d~~~L~~~gi~~VI~l~~~~-~~--------~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~ 77 (139)
T cd00127 7 PGLYLGSYPAASDKELLKKLGITHVLNVAKEV-PN--------ENLFLSDFNYLYVPILDLPSQDISKYFDEAVDFIDDA 77 (139)
T ss_pred CCeEECChhHhcCHHHHHHcCCCEEEEcccCC-CC--------cccCCCCceEEEEEceeCCCCChHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999876 21 1234579999999998776443 3444444444432
Q ss_pred -CCCCcEEEeCccCCchHHHHHHHHHH-hcCCCHHHHHHHhh
Q 002281 345 -SSKKPLYLHSKEGVWRTYAMVSRWRQ-YMARCASQISGQTI 384 (943)
Q Consensus 345 -s~~~PVLVHC~AGKDRTGALvaLlr~-~lGvs~edAiaDYL 384 (943)
..++||||||.+|.+|||++++.++. ..|++.++|++..-
T Consensus 78 ~~~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~~~~~a~~~vr 119 (139)
T cd00127 78 REKGGKVLVHCLAGVSRSATLVIAYLMKTLGLSLREAYEFVK 119 (139)
T ss_pred HhcCCcEEEECCCCCchhHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 34689999999999999977766544 46899999987543
No 35
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.24 E-value=4.7e-11 Score=126.88 Aligned_cols=105 Identities=15% Similarity=0.138 Sum_probs=87.1
Q ss_pred HhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhc--CCCCcEEEeC
Q 002281 277 EEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSN--SSKKPLYLHS 354 (943)
Q Consensus 277 ~eDLa~Lk~lGIKTVIDLRse~~ee~~~~a~e~e~~e~~GI~yIhIPV~d~~~Ps~E~v~aFlelL~d--s~~~PVLVHC 354 (943)
+..++.|+++||++||.+.... |. .+.++..||+++++|+.|...|+.+.+.+|+++++. ..+++|+|||
T Consensus 106 ~~yl~eLk~~gV~~lVrlcE~~-----Yd---~~~~~~~GI~~~~lpipDg~aPs~~~i~~~l~~i~~~l~~g~~VaVHC 177 (241)
T PTZ00393 106 PLYIKEMKNYNVTDLVRTCERT-----YN---DGEITSAGINVHELIFPDGDAPTVDIVSNWLTIVNNVIKNNRAVAVHC 177 (241)
T ss_pred HHHHHHHHHcCCCEEEECCCCC-----CC---HHHHHHcCCeEEEeecCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEC
Confidence 5678999999999999997643 21 234678899999999999999999999999998753 3577999999
Q ss_pred ccCCchHHHHHHHHHHhcCCCHHHHHHHhhccccc
Q 002281 355 KEGVWRTYAMVSRWRQYMARCASQISGQTITSNDV 389 (943)
Q Consensus 355 ~AGKDRTGALvaLlr~~lGvs~edAiaDYLlsn~~ 389 (943)
.+|.+|||+++++|+...|++.++|++.--...+.
T Consensus 178 ~AGlGRTGtl~AayLI~~GmspeeAI~~VR~~RPg 212 (241)
T PTZ00393 178 VAGLGRAPVLASIVLIEFGMDPIDAIVFIRDRRKG 212 (241)
T ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHCCC
Confidence 99999999999998877899999998855444443
No 36
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.22 E-value=1.1e-10 Score=118.14 Aligned_cols=112 Identities=13% Similarity=0.148 Sum_probs=86.7
Q ss_pred eEEEcCCCCH----hhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHh
Q 002281 268 TFCRGGQVTE----EGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVS 343 (943)
Q Consensus 268 ~LYRSGqpT~----eDLa~Lk~lGIKTVIDLRse~~ee~~~~a~e~e~~e~~GI~yIhIPV~d~~~Ps~E~v~aFlelL~ 343 (943)
+|.-...|++ ++++.|+++||+.||++..+. |. .+.++..|+++.++|+.+...|+.+.+..|++++.
T Consensus 17 r~~~~~~P~~~~~~~~l~~L~~~gI~~Iv~l~~~~-----~~---~~~~~~~gi~~~~~p~~D~~~P~~~~i~~~~~~i~ 88 (166)
T PTZ00242 17 KFLILDAPSPSNLPLYIKELQRYNVTHLVRVCGPT-----YD---AELLEKNGIEVHDWPFDDGAPPPKAVIDNWLRLLD 88 (166)
T ss_pred EEEEecCCCcccHHHHHHHHHhCCCeEEEecCCCC-----CC---HHHHHHCCCEEEecCCCCCCCCCHHHHHHHHHHHH
Confidence 4444445544 667999999999999996543 21 13466789999999999888999988888887764
Q ss_pred c------CCCCcEEEeCccCCchHHHHHHHHHHhc-CCCHHHHHHHhhccc
Q 002281 344 N------SSKKPLYLHSKEGVWRTYAMVSRWRQYM-ARCASQISGQTITSN 387 (943)
Q Consensus 344 d------s~~~PVLVHC~AGKDRTGALvaLlr~~l-Gvs~edAiaDYLlsn 387 (943)
. ..++||+|||.+|.+|||+++++++... |++.++|++..-...
T Consensus 89 ~~~~~~~~~g~~V~VHC~aGigRSgt~~a~yL~~~~~~s~~eAi~~vr~~R 139 (166)
T PTZ00242 89 QEFAKQSTPPETIAVHCVAGLGRAPILVALALVEYGGMEPLDAVGFVREKR 139 (166)
T ss_pred HHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHhCCCCHHHHHHHHHHHC
Confidence 2 3478999999999999999888887654 499999988654333
No 37
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=99.19 E-value=2.4e-11 Score=115.75 Aligned_cols=107 Identities=15% Similarity=0.278 Sum_probs=82.8
Q ss_pred EEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCC-CCCCCHHHHHHHHHHHhc--C
Q 002281 269 FCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEV-RTAPTMEQVEKFASLVSN--S 345 (943)
Q Consensus 269 LYRSGqpT~eDLa~Lk~lGIKTVIDLRse~~ee~~~~a~e~e~~e~~GI~yIhIPV~d-~~~Ps~E~v~aFlelL~d--s 345 (943)
||.|+.+... .++|+++||++|||++.+. +.+ ......+++|+++|+.| ...+..+.+..+.+++.+ .
T Consensus 1 lylG~~~~a~-~~~l~~~~I~~Vin~~~~~-~~~-------~~~~~~~~~~~~i~~~D~~~~~~~~~~~~~~~~i~~~~~ 71 (133)
T PF00782_consen 1 LYLGSYPAAS-IAFLKNLGITHVINLQEEC-PNP-------YFYKPEGIEYLRIPIDDDPEEPILEHLDQAVEFIENAIS 71 (133)
T ss_dssp EEEEEHHHHC-HHHHHHTTEEEEEECSSSS-STS-------HHHTTTTSEEEEEEEESSTTSHGGGGHHHHHHHHHHHHH
T ss_pred CEEeCHHHHh-HHHHHHCCCCEEEEccCCC-cCc-------hhcccCCCEEEEEEecCCCCcchHHHHHHHHHhhhhhhc
Confidence 6889988888 9999999999999999875 111 22456789999999987 344444556655555542 4
Q ss_pred CCCcEEEeCccCCchHHHHHHHHHHh-cCCCHHHHHHHhh
Q 002281 346 SKKPLYLHSKEGVWRTYAMVSRWRQY-MARCASQISGQTI 384 (943)
Q Consensus 346 ~~~PVLVHC~AGKDRTGALvaLlr~~-lGvs~edAiaDYL 384 (943)
.+++|||||.+|.+|||++++.|+.. .|++.++|++..-
T Consensus 72 ~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~~~~A~~~v~ 111 (133)
T PF00782_consen 72 EGGKVLVHCKAGLSRSGAVAAAYLMKKNGMSLEEAIEYVR 111 (133)
T ss_dssp TTSEEEEEESSSSSHHHHHHHHHHHHHHTSSHHHHHHHHH
T ss_pred ccceeEEEeCCCcccchHHHHHHHHHHcCCCHHHHHHHHH
Confidence 57899999999999999888887655 6899999988443
No 38
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=99.16 E-value=7.4e-11 Score=119.40 Aligned_cols=103 Identities=13% Similarity=0.187 Sum_probs=64.1
Q ss_pred HhhHHHHHHcCCcEEEEcCCCcccCcchh-hhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhc--CCCCcEEEe
Q 002281 277 EEGLKWLMEKGYKTIVDIRAERVKDNFYE-AAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSN--SSKKPLYLH 353 (943)
Q Consensus 277 ~eDLa~Lk~lGIKTVIDLRse~~ee~~~~-a~e~e~~e~~GI~yIhIPV~d~~~Ps~E~v~aFlelL~d--s~~~PVLVH 353 (943)
+.|+++|+++|++.||.|.... |-..+. ....+.++..|+.++|+||.|...|+.+...++.+.+.. ..++.|++|
T Consensus 61 ~~DL~~Lk~~G~~~Vvtl~~~~-EL~~l~Vp~L~~~~~~~Gi~~~h~PI~D~~aPd~~~~~~i~~eL~~~L~~g~~V~vH 139 (168)
T PF05706_consen 61 QADLERLKDWGAQDVVTLLTDH-ELARLGVPDLGEAAQARGIAWHHLPIPDGSAPDFAAAWQILEELAARLENGRKVLVH 139 (168)
T ss_dssp HHHHHHHHHTT--EEEE-S-HH-HHHHTT-TTHHHHHHHTT-EEEE----TTS---HHHHHHHHHHHHHHHHTT--EEEE
T ss_pred HHHHHHHHHCCCCEEEEeCcHH-HHHHcCCccHHHHHHHcCCEEEecCccCCCCCCHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 6789999999999999998875 222121 234567889999999999999999987655444433321 246799999
Q ss_pred CccCCchHHHHHHHHHHhcC--CCHHHHH
Q 002281 354 SKEGVWRTYAMVSRWRQYMA--RCASQIS 380 (943)
Q Consensus 354 C~AGKDRTGALvaLlr~~lG--vs~edAi 380 (943)
|..|.+|||+++++++..+| ++.++||
T Consensus 140 C~GGlGRtGlvAAcLLl~L~~~~~p~~AI 168 (168)
T PF05706_consen 140 CRGGLGRTGLVAACLLLELGDTMSPEQAI 168 (168)
T ss_dssp -SSSSSHHHHHHHHHHHHH-SSS-HHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCCCChhhcC
Confidence 99999999999999887665 7888875
No 39
>PRK12361 hypothetical protein; Provisional
Probab=99.09 E-value=7.8e-10 Score=129.92 Aligned_cols=118 Identities=14% Similarity=0.214 Sum_probs=92.9
Q ss_pred ceEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhc--
Q 002281 267 VTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSN-- 344 (943)
Q Consensus 267 ~~LYRSGqpT~eDLa~Lk~lGIKTVIDLRse~~ee~~~~a~e~e~~e~~GI~yIhIPV~d~~~Ps~E~v~aFlelL~d-- 344 (943)
+.||.|+++++.|++.|+++||++||||+.+. +...+ .....+++|+++|+.|...|+.+++.+..++++.
T Consensus 100 ~~l~lG~~~~a~d~~~L~~~gI~~Vldlt~E~-~~~~~------~~~~~~i~yl~iPi~D~~~p~~~~l~~a~~~i~~~~ 172 (547)
T PRK12361 100 ENLYLGCRLFPADLEKLKSNKITAILDVTAEF-DGLDW------SLTEEDIDYLNIPILDHSVPTLAQLNQAINWIHRQV 172 (547)
T ss_pred CcEEECCCCCcccHHHHHHcCCCEEEEccccc-ccccc------cccccCceEEEeecCCCCCCcHHHHHHHHHHHHHHH
Confidence 47999999999999999999999999999653 11111 1224689999999999888999988888887753
Q ss_pred CCCCcEEEeCccCCchHHHHHHHHHHh--cCCCHHHHHHHhhccccccc
Q 002281 345 SSKKPLYLHSKEGVWRTYAMVSRWRQY--MARCASQISGQTITSNDVLL 391 (943)
Q Consensus 345 s~~~PVLVHC~AGKDRTGALvaLlr~~--lGvs~edAiaDYLlsn~~~~ 391 (943)
..+++|||||++|.+|++++++.|+.. .+++.++|++.--...+...
T Consensus 173 ~~~~~VlVHC~~G~sRSa~vv~ayLm~~~~~~~~~eA~~~vr~~Rp~v~ 221 (547)
T PRK12361 173 RANKSVVVHCALGRGRSVLVLAAYLLCKDPDLTVEEVLQQIKQIRKTAR 221 (547)
T ss_pred HCCCeEEEECCCCCCcHHHHHHHHHHHhccCCCHHHHHHHHHHHCCCCC
Confidence 346899999999999999888888764 36999999886544444333
No 40
>KOG1720 consensus Protein tyrosine phosphatase CDC14 [Defense mechanisms]
Probab=98.71 E-value=4.8e-08 Score=101.94 Aligned_cols=94 Identities=17% Similarity=0.319 Sum_probs=78.9
Q ss_pred HHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcC-CCCcEEEeCccCC
Q 002281 280 LKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNS-SKKPLYLHSKEGV 358 (943)
Q Consensus 280 La~Lk~lGIKTVIDLRse~~ee~~~~a~e~e~~e~~GI~yIhIPV~d~~~Ps~E~v~aFlelL~ds-~~~PVLVHC~AGK 358 (943)
+..++...+++|+-|...- |+ ++.....||..+++|+.|...|+++.+.+|+++++.. ..+.+.|||++|-
T Consensus 87 ~~~~~~~~v~s~vrln~~~-----yd---~~~f~~~Gi~h~~l~f~Dg~tP~~~~v~~fv~i~e~~~~~g~iaVHCkaGl 158 (225)
T KOG1720|consen 87 IQYFKNNNVTSIVRLNKRL-----YD---AKRFTDAGIDHHDLFFADGSTPTDAIVKEFVKIVENAEKGGKIAVHCKAGL 158 (225)
T ss_pred HHHhhhcccceEEEcCCCC-----CC---hHHhcccCceeeeeecCCCCCCCHHHHHHHHHHHHHHHhcCeEEEEeccCC
Confidence 4566677999999996543 22 3456788999999999999999999999999998532 2589999999999
Q ss_pred chHHHHHHHHHHh-cCCCHHHHHH
Q 002281 359 WRTYAMVSRWRQY-MARCASQISG 381 (943)
Q Consensus 359 DRTGALvaLlr~~-lGvs~edAia 381 (943)
+|||+|+|+|+.+ .|+++.|||+
T Consensus 159 GRTG~liAc~lmy~~g~ta~eaI~ 182 (225)
T KOG1720|consen 159 GRTGTLIACYLMYEYGMTAGEAIA 182 (225)
T ss_pred CchhHHHHHHHHHHhCCCHHHHHH
Confidence 9999999999876 6999999987
No 41
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=98.28 E-value=1.7e-06 Score=86.22 Aligned_cols=61 Identities=20% Similarity=0.357 Sum_probs=45.8
Q ss_pred hHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcC-CCCcEEEeCccCCchHHHHHHHH
Q 002281 308 IDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNS-SKKPLYLHSKEGVWRTYAMVSRW 368 (943)
Q Consensus 308 e~e~~e~~GI~yIhIPV~d~~~Ps~E~v~aFlelL~ds-~~~PVLVHC~AGKDRTGALvaLl 368 (943)
+.+.++..|+.|++||+.+...|.++.+.+|++++... .+..++|||.+|++||.+...++
T Consensus 84 e~~~~~~~g~~Y~Ripitd~~~P~~~~iD~fi~~v~~~p~~~~l~fhC~~G~GRTTt~Mv~~ 145 (149)
T PF14566_consen 84 EEELVEGNGLRYYRIPITDHQAPDPEDIDAFINFVKSLPKDTWLHFHCQAGRGRTTTFMVMY 145 (149)
T ss_dssp HHHHHHHTT-EEEEEEE-TTS---HHHHHHHHHHHHTS-TT-EEEEE-SSSSHHHHHHHHHH
T ss_pred HHHHHhcCCceEEEEeCCCcCCCCHHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHH
Confidence 45678899999999999999999999999999999753 34679999999999999555554
No 42
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=98.20 E-value=2.8e-06 Score=92.05 Aligned_cols=109 Identities=25% Similarity=0.256 Sum_probs=74.0
Q ss_pred CEEEEEecCC--h-hHHHHHHHHHHHHhcCCCeEEEEcCChhh-hhhcCCCCccceeeeccCccccccCccEEEEEcCCc
Q 002281 691 RTVLVLKKPG--P-ALMEEAKEVASFLYHQEKMNILVEPDVHD-IFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDG 766 (943)
Q Consensus 691 k~VlIv~K~~--~-~~~~~a~~l~~~L~~~~g~~V~ve~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIvLGGDG 766 (943)
++++||..+. . ...+.+.++.++|.+ .++++.+...... .... . . ......++|+||++||||
T Consensus 2 ~~~~ii~Np~sg~~~~~~~~~~i~~~l~~-~~~~~~~~~t~~~~~~~~---------~-~--~~~~~~~~d~ivv~GGDG 68 (293)
T TIGR00147 2 AEAPAILNPTAGKSNDNKPLREVIMLLRE-EGMEIHVRVTWEKGDAAR---------Y-V--EEARKFGVDTVIAGGGDG 68 (293)
T ss_pred ceEEEEECCCccchhhHHHHHHHHHHHHH-CCCEEEEEEecCcccHHH---------H-H--HHHHhcCCCEEEEECCCC
Confidence 5788888774 3 345667788888854 4666544222110 0000 0 0 011234589999999999
Q ss_pred hHHHHhhhccC-CCCcEEE-EeCCCCcccCC-CC-chhHHHHHHHHHcCC
Q 002281 767 VILHASNLFRG-AVPPVIS-FNLGSLGFLTS-HP-FEDYRQDLRQVIYGN 812 (943)
Q Consensus 767 TiL~Aar~~~~-~~~PVLG-IN~GsLGFLt~-~~-~ed~~~~L~~ll~G~ 812 (943)
|+..+++.+.. ...|.+| |+.|+.++|+. +. ++++.++++.+.+|.
T Consensus 69 Tl~~v~~~l~~~~~~~~lgiiP~Gt~N~~a~~l~i~~~~~~~~~~l~~~~ 118 (293)
T TIGR00147 69 TINEVVNALIQLDDIPALGILPLGTANDFARSLGIPEDLDKAAKLVIAGD 118 (293)
T ss_pred hHHHHHHHHhcCCCCCcEEEEcCcCHHHHHHHcCCCCCHHHHHHHHHcCC
Confidence 99999997754 3456777 89999999997 66 678888999988876
No 43
>KOG2836 consensus Protein tyrosine phosphatase IVA1 [Signal transduction mechanisms]
Probab=98.12 E-value=1.6e-05 Score=78.46 Aligned_cols=103 Identities=16% Similarity=0.172 Sum_probs=82.2
Q ss_pred EcCCCCHhh----HHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHh---
Q 002281 271 RGGQVTEEG----LKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVS--- 343 (943)
Q Consensus 271 RSGqpT~eD----La~Lk~lGIKTVIDLRse~~ee~~~~a~e~e~~e~~GI~yIhIPV~d~~~Ps~E~v~aFlelL~--- 343 (943)
..-.|+... ++.|++.|++|||-..... |. ...++..||..+..|..+...|..+.++.+++++.
T Consensus 21 IThnPtnaTln~fieELkKygvttvVRVCe~T-----Yd---t~~lek~GI~Vldw~f~dg~ppp~qvv~~w~~l~~~~f 92 (173)
T KOG2836|consen 21 ITHNPTNATLNKFIEELKKYGVTTVVRVCEPT-----YD---TTPLEKEGITVLDWPFDDGAPPPNQVVDDWLSLVKTKF 92 (173)
T ss_pred EecCCCchhHHHHHHHHHhcCCeEEEEecccc-----cC---CchhhhcCceEeecccccCCCCchHHHHHHHHHHHHHH
Confidence 344555443 5778899999999998775 21 12367899999999999888888888888877753
Q ss_pred -cCCCCcEEEeCccCCchHHHHHHHHHHhcCCCHHHHHH
Q 002281 344 -NSSKKPLYLHSKEGVWRTYAMVSRWRQYMARCASQISG 381 (943)
Q Consensus 344 -ds~~~PVLVHC~AGKDRTGALvaLlr~~lGvs~edAia 381 (943)
+..+.-|.|||-+|-+|+-+++++.+...|+..++|++
T Consensus 93 ~e~p~~cvavhcvaglgrapvlvalalie~gmkyedave 131 (173)
T KOG2836|consen 93 REEPGCCVAVHCVAGLGRAPVLVALALIEAGMKYEDAVE 131 (173)
T ss_pred hhCCCCeEEEEeecccCcchHHHHHHHHHccccHHHHHH
Confidence 34456699999999999999999999889999999975
No 44
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=98.10 E-value=1.3e-05 Score=82.13 Aligned_cols=77 Identities=14% Similarity=0.276 Sum_probs=59.3
Q ss_pred hhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhc--CCCCcEEEeCccCCchHHHHHHHHHHh--cCCCHHHHHHHhhccc
Q 002281 312 ILSGKVELIKIPVEVRTAPTMEQVEKFASLVSN--SSKKPLYLHSKEGVWRTYAMVSRWRQY--MARCASQISGQTITSN 387 (943)
Q Consensus 312 ~e~~GI~yIhIPV~d~~~Ps~E~v~aFlelL~d--s~~~PVLVHC~AGKDRTGALvaLlr~~--lGvs~edAiaDYLlsn 387 (943)
.+..|+.+.++|+.|...|+.+++.++.+++.+ +.++.|+|||.+|.+|||++++.|+.+ .+...++++.-.....
T Consensus 68 ~~~~~~~~~~~~~~D~~~p~~~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~~~~~~i~~~~~~r 147 (180)
T COG2453 68 EENDGIQVLHLPILDGTVPDLEDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLSLADEAIAVKRRRR 147 (180)
T ss_pred eccCCceeeeeeecCCCCCcHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCCCHHHHHHHHHhcC
Confidence 466899999999999999999999888888753 345699999999999999777755443 3466666666555444
Q ss_pred c
Q 002281 388 D 388 (943)
Q Consensus 388 ~ 388 (943)
+
T Consensus 148 ~ 148 (180)
T COG2453 148 P 148 (180)
T ss_pred C
Confidence 4
No 45
>KOG1719 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=98.05 E-value=1.8e-05 Score=79.80 Aligned_cols=99 Identities=16% Similarity=0.225 Sum_probs=78.2
Q ss_pred hhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCC-CCCCHHHHHHHHHHHhc--CCCCcEEEeC
Q 002281 278 EGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVR-TAPTMEQVEKFASLVSN--SSKKPLYLHS 354 (943)
Q Consensus 278 eDLa~Lk~lGIKTVIDLRse~~ee~~~~a~e~e~~e~~GI~yIhIPV~d~-~~Ps~E~v~aFlelL~d--s~~~PVLVHC 354 (943)
.+.+.++++|+.-|+.+..+. |- ..+ . ..-+..||+.+.+|..|. ..|+.+.+.+..+++.. ..++-++|||
T Consensus 42 ~~~~~i~ke~v~gvv~~ne~y-E~-~a~--s-~~wk~~giE~L~i~T~D~~~~Ps~~~i~~aVeFi~k~asLGktvYVHC 116 (183)
T KOG1719|consen 42 MDVPLIKKENVGGVVTLNEPY-EL-LAP--S-NLWKNYGIEFLVIPTRDYTGAPSLENIQKAVEFIHKNASLGKTVYVHC 116 (183)
T ss_pred ccchHHHhcCCCeEEEeCCch-hh-hhh--h-HHHHhccceeEEeccccccCCCCHHHHHHHHHHHHhccccCCeEEEEe
Confidence 556789999999999998764 11 111 1 135678999999998764 47899999888888753 4577899999
Q ss_pred ccCCchHHHHHHHHHHh-cCCCHHHHHH
Q 002281 355 KEGVWRTYAMVSRWRQY-MARCASQISG 381 (943)
Q Consensus 355 ~AGKDRTGALvaLlr~~-lGvs~edAia 381 (943)
+||..|+.++++||+.. -+|+.++|.+
T Consensus 117 KAGRtRSaTvV~cYLmq~~~wtpe~A~~ 144 (183)
T KOG1719|consen 117 KAGRTRSATVVACYLMQHKNWTPEAAVE 144 (183)
T ss_pred cCCCccchhhhhhhhhhhcCCCHHHHHH
Confidence 99999999999998754 5899999976
No 46
>KOG1716 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=97.91 E-value=5.2e-05 Score=83.09 Aligned_cols=116 Identities=14% Similarity=0.205 Sum_probs=82.8
Q ss_pred cceEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCH----HHHHHHHHH
Q 002281 266 EVTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTM----EQVEKFASL 341 (943)
Q Consensus 266 e~~LYRSGqpT~eDLa~Lk~lGIKTVIDLRse~~ee~~~~a~e~e~~e~~GI~yIhIPV~d~~~Ps~----E~v~aFlel 341 (943)
.+.+|-|.+..+.+...|+++||+.|+|+.... .... .....+++|.++|+.|....+. +..-.|++.
T Consensus 79 ~p~l~lg~~~~~~~~~~l~~~~it~vln~~~~~--~~~~------~~~~~~~~y~~i~~~D~~~~~i~~~~~~~~~fI~~ 150 (285)
T KOG1716|consen 79 LPNLYLGSQGVASDPDLLKKLGITHVLNVSSSC--PNPR------FLKEQGIKYLRIPVEDNPSTDILQHFPEAISFIEK 150 (285)
T ss_pred cCCceecCcccccchhhHHHcCCCEEEEecccC--Cccc------cccccCceEEeccccCCccccHHHHHHHHHHHHHH
Confidence 347888999999999999999999999998764 1110 1233489999999987544332 233345555
Q ss_pred HhcCCCCcEEEeCccCCchHHHHH-HHHHHhcCCCHHHHHHHhhcccccc
Q 002281 342 VSNSSKKPLYLHSKEGVWRTYAMV-SRWRQYMARCASQISGQTITSNDVL 390 (943)
Q Consensus 342 L~ds~~~PVLVHC~AGKDRTGALv-aLlr~~lGvs~edAiaDYLlsn~~~ 390 (943)
.. ..++-|||||.+|..|+-+++ |.+..+.|++.++|++-.-..-+..
T Consensus 151 a~-~~~~~vlVHC~~GvSRSat~viAYlM~~~~~~l~~A~~~vk~~R~~i 199 (285)
T KOG1716|consen 151 AR-EKGGKVLVHCQAGVSRSATLVIAYLMKYEGLSLEDAYELVKSRRPII 199 (285)
T ss_pred HH-hCCCeEEEEcCCccchhHHHHHHHHHHHcCCCHHHHHHHHHHhCCcc
Confidence 42 457899999999999999444 4444567999999977555444444
No 47
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=97.71 E-value=5.1e-05 Score=68.24 Aligned_cols=52 Identities=21% Similarity=0.189 Sum_probs=36.7
Q ss_pred EEEEecCCCCCCCH-HHHHHHHHHHhcC-----CCCcEEEeCccCCchHHHHHHHHHH
Q 002281 319 LIKIPVEVRTAPTM-EQVEKFASLVSNS-----SKKPLYLHSKEGVWRTYAMVSRWRQ 370 (943)
Q Consensus 319 yIhIPV~d~~~Ps~-E~v~aFlelL~ds-----~~~PVLVHC~AGKDRTGALvaLlr~ 370 (943)
|.+.+..+...|.. +.+..|++.+... .++|++|||.+|++|||++++++..
T Consensus 5 ~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~ 62 (105)
T smart00404 5 YHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDIL 62 (105)
T ss_pred EeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHH
Confidence 34445555555654 6777777766432 2679999999999999988877765
No 48
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=97.71 E-value=5.1e-05 Score=68.24 Aligned_cols=52 Identities=21% Similarity=0.189 Sum_probs=36.7
Q ss_pred EEEEecCCCCCCCH-HHHHHHHHHHhcC-----CCCcEEEeCccCCchHHHHHHHHHH
Q 002281 319 LIKIPVEVRTAPTM-EQVEKFASLVSNS-----SKKPLYLHSKEGVWRTYAMVSRWRQ 370 (943)
Q Consensus 319 yIhIPV~d~~~Ps~-E~v~aFlelL~ds-----~~~PVLVHC~AGKDRTGALvaLlr~ 370 (943)
|.+.+..+...|.. +.+..|++.+... .++|++|||.+|++|||++++++..
T Consensus 5 ~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~ 62 (105)
T smart00012 5 YHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDIL 62 (105)
T ss_pred EeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHH
Confidence 34445555555654 6777777766432 2679999999999999988877765
No 49
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=97.61 E-value=0.00021 Score=77.50 Aligned_cols=105 Identities=14% Similarity=0.217 Sum_probs=73.6
Q ss_pred ceEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHH-HHHHHHHHHhc-
Q 002281 267 VTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTME-QVEKFASLVSN- 344 (943)
Q Consensus 267 ~~LYRSGqpT~eDLa~Lk~lGIKTVIDLRse~~ee~~~~a~e~e~~e~~GI~yIhIPV~d~~~Ps~E-~v~aFlelL~d- 344 (943)
+.||-|+.-+...++-|+++|||+|||..+.- -..+ -+...+.|..||+.|...-... -+.+.+.+|++
T Consensus 177 p~LYLg~a~ds~NldvLkk~gI~yviNVTpnl--pn~f-------e~~g~f~YkqipisDh~Sqnls~ffpEAIsfIdeA 247 (343)
T KOG1717|consen 177 PNLYLGCAKDSTNLDVLKKYGIKYVINVTPNL--PNNF-------ENNGEFIYKQIPISDHASQNLSQFFPEAISFIDEA 247 (343)
T ss_pred cchhcccccccccHHHHHhcCceEEEecCCCC--cchh-------hcCCceeEEeeeccchhhhhhhhhhHHHHHHHHHh
Confidence 46899998888899999999999999998753 1111 2345689999999865432211 22334445533
Q ss_pred -CCCCcEEEeCccCCchHHHHHHHHH-HhcCCCHHHHH
Q 002281 345 -SSKKPLYLHSKEGVWRTYAMVSRWR-QYMARCASQIS 380 (943)
Q Consensus 345 -s~~~PVLVHC~AGKDRTGALvaLlr-~~lGvs~edAi 380 (943)
..+-.|||||-+|..|+-++...|+ +.+..+.++|.
T Consensus 248 rsk~cgvLVHClaGISRSvTvtvaYLMqkl~lslndAy 285 (343)
T KOG1717|consen 248 RSKNCGVLVHCLAGISRSVTVTVAYLMQKLNLSLNDAY 285 (343)
T ss_pred hccCCcEEEeeeccccchhHHHHHHHHHHhccchhhHH
Confidence 3456899999999999996655554 34667777773
No 50
>KOG1718 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=97.54 E-value=0.00051 Score=70.42 Aligned_cols=102 Identities=13% Similarity=0.204 Sum_probs=72.6
Q ss_pred ceEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCC-HHHHHHHHHHHh--
Q 002281 267 VTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPT-MEQVEKFASLVS-- 343 (943)
Q Consensus 267 ~~LYRSGqpT~eDLa~Lk~lGIKTVIDLRse~~ee~~~~a~e~e~~e~~GI~yIhIPV~d~~~Ps-~E~v~aFlelL~-- 343 (943)
..||-|.....-+...|++.||..|||-..+. ... ...+++|+.+|+.|..... .+.++...+.+.
T Consensus 22 ~sLfl~~GvaA~~k~~l~~~~It~IiNat~E~-pn~----------~l~~~qy~kv~~~D~p~~~l~~hfD~vAD~I~~v 90 (198)
T KOG1718|consen 22 PSLFLSNGVAANDKLLLKKRKITCIINATTEV-PNT----------SLPDIQYMKVPLEDTPQARLYDHFDPVADKIHSV 90 (198)
T ss_pred cceeEeccccccCHHHHHhcCceEEEEcccCC-CCc----------cCCCceeEEEEcccCCcchhhhhhhHHHHHHHHH
Confidence 36888866666677889999999999998764 222 2358999999998643221 233333333332
Q ss_pred cCCCCcEEEeCccCCchHHHHHHHH-HHhcCCCHHHH
Q 002281 344 NSSKKPLYLHSKEGVWRTYAMVSRW-RQYMARCASQI 379 (943)
Q Consensus 344 ds~~~PVLVHC~AGKDRTGALvaLl-r~~lGvs~edA 379 (943)
....+..|+||.||..|+..+++.| .++.+++..||
T Consensus 91 ~~~gG~TLvHC~AGVSRSAsLClAYLmK~~~msLreA 127 (198)
T KOG1718|consen 91 IMRGGKTLVHCVAGVSRSASLCLAYLMKYHCMSLREA 127 (198)
T ss_pred HhcCCcEEEEEccccchhHHHHHHHHHHHccchHHHH
Confidence 2457899999999999999777655 45778999888
No 51
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=96.75 E-value=0.0026 Score=66.71 Aligned_cols=50 Identities=18% Similarity=0.117 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhcC----CCCcEEEeCccCCchHHHHHHHHHHh------cCCCHHHHHHH
Q 002281 333 EQVEKFASLVSNS----SKKPLYLHSKEGVWRTYAMVSRWRQY------MARCASQISGQ 382 (943)
Q Consensus 333 E~v~aFlelL~ds----~~~PVLVHC~AGKDRTGALvaLlr~~------lGvs~edAiaD 382 (943)
+.+.+|++.+... ..+|++|||.+|.+|||+++++...+ ..++..+++..
T Consensus 148 ~~~~~~~~~v~~~~~~~~~~pivVHC~~G~gRsg~~~a~~~~~~~~~~~~~~~~~~~v~~ 207 (231)
T cd00047 148 DSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGRTGTFIAIDILLQRLEAEGVVDIFQTVKE 207 (231)
T ss_pred HHHHHHHHHHHHHhccCCCCCeEEECCCCCCccchHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 6677777776433 36799999999999999888776432 12566665543
No 52
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=96.54 E-value=0.0055 Score=65.47 Aligned_cols=52 Identities=19% Similarity=0.167 Sum_probs=35.3
Q ss_pred CHHHHHHHHHHHhcC---CCCcEEEeCccCCchHHHHHHHHHHh------cCCCHHHHHHH
Q 002281 331 TMEQVEKFASLVSNS---SKKPLYLHSKEGVWRTYAMVSRWRQY------MARCASQISGQ 382 (943)
Q Consensus 331 s~E~v~aFlelL~ds---~~~PVLVHC~AGKDRTGALvaLlr~~------lGvs~edAiaD 382 (943)
+.+.+.+|+..+... ..+|++|||.+|.+|||+++++...+ ..++..+++..
T Consensus 174 ~~~~~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a~~~~~~~l~~~~~v~v~~~v~~ 234 (258)
T smart00194 174 SPKSILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQQLEAGKEVDIFEIVKE 234 (258)
T ss_pred CHHHHHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhHHHHHHHHHHHcCCCCHHHHHHH
Confidence 456677777766432 16799999999999999877775432 23555555543
No 53
>PRK13057 putative lipid kinase; Reviewed
Probab=96.23 E-value=0.012 Score=64.13 Aligned_cols=60 Identities=25% Similarity=0.277 Sum_probs=48.1
Q ss_pred ccCccEEEEEcCCchHHHHhhhccCCCCcEEEEeCCCCcccCCC-C-chhHHHHHHHHHcCC
Q 002281 753 HERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSH-P-FEDYRQDLRQVIYGN 812 (943)
Q Consensus 753 ~~~~DlVIvLGGDGTiL~Aar~~~~~~~PVLGIN~GsLGFLt~~-~-~ed~~~~L~~ll~G~ 812 (943)
..++|.||++|||||+-.++..+....+|+.-|-.|+-.-++.. . +.++.++++.+..|.
T Consensus 48 ~~~~d~iiv~GGDGTv~~v~~~l~~~~~~lgiiP~GT~Ndfar~Lg~~~~~~~a~~~i~~~~ 109 (287)
T PRK13057 48 ADGVDLVIVGGGDGTLNAAAPALVETGLPLGILPLGTANDLARTLGIPLDLEAAARVIATGQ 109 (287)
T ss_pred HcCCCEEEEECchHHHHHHHHHHhcCCCcEEEECCCCccHHHHHcCCCCCHHHHHHHHHcCC
Confidence 35679999999999999999988777889888889976666542 2 457888998888775
No 54
>KOG2283 consensus Clathrin coat dissociation kinase GAK/PTEN/Auxilin and related tyrosine phosphatases [Signal transduction mechanisms; General function prediction only]
Probab=96.21 E-value=0.0059 Score=71.09 Aligned_cols=97 Identities=19% Similarity=0.249 Sum_probs=65.0
Q ss_pred HHHHHc--CCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHH----HHhcCCCCcEEEeC
Q 002281 281 KWLMEK--GYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFAS----LVSNSSKKPLYLHS 354 (943)
Q Consensus 281 a~Lk~l--GIKTVIDLRse~~ee~~~~a~e~e~~e~~GI~yIhIPV~d~~~Ps~E~v~aFle----lL~ds~~~PVLVHC 354 (943)
.+|... |==.|.||+++. .|. ...-.=+...+|..+...|+.+.+..|-+ ++......-+.+||
T Consensus 45 ~fL~s~H~~~y~vyNL~~er----~yd------~~~f~g~V~~~~~~Dh~~P~L~~l~~~c~~~~~WL~~d~~nVvvvHC 114 (434)
T KOG2283|consen 45 LFLDSKHKDHYKVYNLSSER----LYD------PSRFHGRVARFGFDDHNPPPLELLCPFCKSMDNWLSEDPKNVVVVHC 114 (434)
T ss_pred HHHhhccCCceEEEecCccc----cCC------ccccccceeecCCCCCCCCcHHHHHHHHHCHHHHHhcCccceEEEEc
Confidence 444433 445699999743 121 01111245558999999999998877755 44434455689999
Q ss_pred ccCCchHHHHHHHHHHhcC--CCHHHHHHHhhccc
Q 002281 355 KEGVWRTYAMVSRWRQYMA--RCASQISGQTITSN 387 (943)
Q Consensus 355 ~AGKDRTGALvaLlr~~lG--vs~edAiaDYLlsn 387 (943)
++||+|||+|+..++.+.| ..+++|++.|....
T Consensus 115 k~Gkgrtg~~icA~L~~~~~~~ta~eald~~~~kR 149 (434)
T KOG2283|consen 115 KAGKGRTGVMICAYLIYSGISATAEEALDYFNEKR 149 (434)
T ss_pred cCCCcceEEEEeHHHHhhhhcCCHHHHHHHHhhhh
Confidence 9999999976666666655 45788888887553
No 55
>PRK00861 putative lipid kinase; Reviewed
Probab=96.17 E-value=0.032 Score=61.25 Aligned_cols=107 Identities=14% Similarity=0.240 Sum_probs=63.9
Q ss_pred CEEEEEecCCh---hHHHHHHHHHHHHhcCCCeEEEEcCChh--hhhhcCCCCccceeeeccCccccccCccEEEEEcCC
Q 002281 691 RTVLVLKKPGP---ALMEEAKEVASFLYHQEKMNILVEPDVH--DIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGD 765 (943)
Q Consensus 691 k~VlIv~K~~~---~~~~~a~~l~~~L~~~~g~~V~ve~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIvLGGD 765 (943)
++++||..|.. .......++...|.+...++++....-. ..+. .+...++.|+||++|||
T Consensus 3 ~~~~iI~NP~sG~~~~~~~~~~i~~~l~~~~~~~~~~t~~~~~a~~~a---------------~~~~~~~~d~vv~~GGD 67 (300)
T PRK00861 3 RSACLIFNPVAGQGNPEVDLALIRAILEPEMDLDIYLTTPEIGADQLA---------------QEAIERGAELIIASGGD 67 (300)
T ss_pred ceEEEEECCCCCCCchhhhHHHHHHHHHhcCceEEEEccCCCCHHHHH---------------HHHHhcCCCEEEEECCh
Confidence 46777766663 2234456777777542234444322211 1110 01113467999999999
Q ss_pred chHHHHhhhccCCCCcEEEEeCCCCcccC-CCC-chhHHHHHHHHHcCC
Q 002281 766 GVILHASNLFRGAVPPVISFNLGSLGFLT-SHP-FEDYRQDLRQVIYGN 812 (943)
Q Consensus 766 GTiL~Aar~~~~~~~PVLGIN~GsLGFLt-~~~-~ed~~~~L~~ll~G~ 812 (943)
||+=.++..+....+|+-=|-.|+-.-++ .+. +.++.++++.+.+|.
T Consensus 68 GTl~evv~~l~~~~~~lgviP~GTgNdfAr~lgi~~~~~~a~~~i~~g~ 116 (300)
T PRK00861 68 GTLSAVAGALIGTDIPLGIIPRGTANAFAAALGIPDTIEEACRTILQGK 116 (300)
T ss_pred HHHHHHHHHHhcCCCcEEEEcCCchhHHHHHcCCCCCHHHHHHHHHcCC
Confidence 99999999887777776556677533322 222 346788888888876
No 56
>PRK11914 diacylglycerol kinase; Reviewed
Probab=96.00 E-value=0.038 Score=60.85 Aligned_cols=109 Identities=25% Similarity=0.299 Sum_probs=67.0
Q ss_pred CCEEEEEecCCh---hHHHHHHHHHHHHhcCCCeEEE--EcCChhhhhhcCCCCccceeeeccCccccccCccEEEEEcC
Q 002281 690 PRTVLVLKKPGP---ALMEEAKEVASFLYHQEKMNIL--VEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGG 764 (943)
Q Consensus 690 pk~VlIv~K~~~---~~~~~a~~l~~~L~~~~g~~V~--ve~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIvLGG 764 (943)
+++++||..|.. ...+.+.++.+.|.+ .++++. ......+ ...+ . ......++|+||++||
T Consensus 8 ~~~~~iI~NP~sG~g~~~~~~~~~~~~l~~-~g~~~~~~~t~~~~~-~~~~-----a-------~~~~~~~~d~vvv~GG 73 (306)
T PRK11914 8 IGKVTVLTNPLSGHGAAPHAAERAIARLHH-RGVDVVEIVGTDAHD-ARHL-----V-------AAALAKGTDALVVVGG 73 (306)
T ss_pred CceEEEEECCCCCCCcHHHHHHHHHHHHHH-cCCeEEEEEeCCHHH-HHHH-----H-------HHHHhcCCCEEEEECC
Confidence 367787777663 245567788888854 465543 2222111 1000 0 0111345799999999
Q ss_pred CchHHHHhhhccCCCCcEEEEeCCCCcccC-CCC--chhHHHHHHHHHcCC
Q 002281 765 DGVILHASNLFRGAVPPVISFNLGSLGFLT-SHP--FEDYRQDLRQVIYGN 812 (943)
Q Consensus 765 DGTiL~Aar~~~~~~~PVLGIN~GsLGFLt-~~~--~ed~~~~L~~ll~G~ 812 (943)
|||+=.++..+....+|+-=|-.|+-.=++ .+. .++.+++++.+..|.
T Consensus 74 DGTi~evv~~l~~~~~~lgiiP~GT~NdfAr~lg~~~~~~~~a~~~i~~g~ 124 (306)
T PRK11914 74 DGVISNALQVLAGTDIPLGIIPAGTGNDHAREFGIPTGDPEAAADVIVDGW 124 (306)
T ss_pred chHHHHHhHHhccCCCcEEEEeCCCcchhHHHcCCCCCCHHHHHHHHHcCC
Confidence 999988888777777776656777644443 222 246778888888776
No 57
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=95.97 E-value=0.0052 Score=67.04 Aligned_cols=40 Identities=20% Similarity=0.355 Sum_probs=29.3
Q ss_pred CCCHHHHHHHHHHHhcC--CCCcEEEeCccCCchHHHHHHHH
Q 002281 329 APTMEQVEKFASLVSNS--SKKPLYLHSKEGVWRTYAMVSRW 368 (943)
Q Consensus 329 ~Ps~E~v~aFlelL~ds--~~~PVLVHC~AGKDRTGALvaLl 368 (943)
.|+...+.+++.-+.+. ..+|++|||.||.||||+++++-
T Consensus 198 ~p~i~sl~~~~~sl~~sp~~t~piiVHCSAGvGRTGTFIalD 239 (302)
T COG5599 198 VPDIRSLTEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALD 239 (302)
T ss_pred CcCHHHHHHHHHHhhcCcCCCCCEEEEeccCCCCcceeeeHH
Confidence 45445555666656444 57899999999999999777764
No 58
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=95.69 E-value=0.019 Score=63.90 Aligned_cols=23 Identities=9% Similarity=0.132 Sum_probs=19.7
Q ss_pred CCCcEEEeCccCCchHHHHHHHH
Q 002281 346 SKKPLYLHSKEGVWRTYAMVSRW 368 (943)
Q Consensus 346 ~~~PVLVHC~AGKDRTGALvaLl 368 (943)
..+|++|||.+|.+|||+++++-
T Consensus 220 ~~~PIVVHCSaGvGRTGtFcaiD 242 (298)
T PHA02740 220 KIAPIIIDCIDGISSSAVFCVFD 242 (298)
T ss_pred CCCCEEEECCCCCchhHHHHHHH
Confidence 35799999999999999877764
No 59
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=95.45 E-value=0.021 Score=63.41 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=19.4
Q ss_pred CCcEEEeCccCCchHHHHHHHH
Q 002281 347 KKPLYLHSKEGVWRTYAMVSRW 368 (943)
Q Consensus 347 ~~PVLVHC~AGKDRTGALvaLl 368 (943)
.+|++|||.+|.+|||+++++-
T Consensus 229 ~~PIvVHCsaGvGRTGtF~aid 250 (303)
T PHA02742 229 EPPILVHCSAGLDRAGAFCAID 250 (303)
T ss_pred CCCeEEECCCCCchhHHHHHHH
Confidence 4799999999999999887764
No 60
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=94.99 E-value=0.026 Score=63.03 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=19.1
Q ss_pred CcEEEeCccCCchHHHHHHHH
Q 002281 348 KPLYLHSKEGVWRTYAMVSRW 368 (943)
Q Consensus 348 ~PVLVHC~AGKDRTGALvaLl 368 (943)
+|++|||.+|.+|||+++++-
T Consensus 230 ~PIvVHCsaGvGRtGtfcaid 250 (312)
T PHA02747 230 CPIVVHCSDGVGKTGIFCAVD 250 (312)
T ss_pred CCEEEEecCCCcchhHHHHHH
Confidence 699999999999999887774
No 61
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=94.94 E-value=0.043 Score=62.03 Aligned_cols=60 Identities=27% Similarity=0.385 Sum_probs=49.4
Q ss_pred cCccEEEEEcCCchHHHHhhhccCCCCcEEEEeCCCCcccC--CCCchhHHHHHHHHHcCCCC
Q 002281 754 ERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLT--SHPFEDYRQDLRQVIYGNNT 814 (943)
Q Consensus 754 ~~~DlVIvLGGDGTiL~Aar~~~~~~~PVLGIN~GsLGFLt--~~~~ed~~~~L~~ll~G~~~ 814 (943)
..+|+|+..|||||.=-++.-. +..+|||||-.|.--|.. .++|++....+..+++|+++
T Consensus 99 ~gVdlIvfaGGDGTarDVa~av-~~~vPvLGipaGvk~~SgvfA~~P~~aa~l~~~~lkg~~r 160 (355)
T COG3199 99 RGVDLIVFAGGDGTARDVAEAV-GADVPVLGIPAGVKNYSGVFALSPEDAARLLGAFLKGNAR 160 (355)
T ss_pred cCceEEEEeCCCccHHHHHhhc-cCCCceEeeccccceeccccccChHHHHHHHHHHhccccc
Confidence 3799999999999987777665 678999999999755553 56888988899999999654
No 62
>PLN02727 NAD kinase
Probab=94.92 E-value=0.029 Score=70.01 Aligned_cols=81 Identities=11% Similarity=-0.084 Sum_probs=69.5
Q ss_pred ccccCCC-CccccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCccccCCcCCccccCCCccccccccccccccccc
Q 002281 523 SEIVSSG-PVSGVAETRYSQWSLSGNNLSPNHQNLPAGSEKSSDNNGYVSAGCSTNGFDRGDRSSMTEANLLTSVTKNLD 601 (943)
Q Consensus 523 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (943)
+++.+.+ +.+++++.++|||++++++.+++.|++...+.+++||+++.+|+...+.... ++.++.+ +++|++
T Consensus 533 ~kn~s~d~qss~~~~~k~sNGss~~s~~s~s~~Ss~~~~~~~~ng~~stsv~~nl~~~v~-----s~s~res--~s~Ng~ 605 (986)
T PLN02727 533 EKNSSPKYQSSEFDNGKSSNGSSFASDGSLSVASSITNGNPSNNGASSSTVSDNLERSVA-----SVSVRES--QRSNGK 605 (986)
T ss_pred ccccCccccchhhccccCCCCccccccCcccccccccCCccccCCCccccccCCCccccc-----ccccccc--cccCCc
Confidence 6677777 8899999999999999999999999999999999999999999988887766 3444444 788888
Q ss_pred ccccccccc
Q 002281 602 EQVISSSVR 610 (943)
Q Consensus 602 ~~~~~~~~~ 610 (943)
.++.+++-.
T Consensus 606 a~vgssd~~ 614 (986)
T PLN02727 606 ASLGSSDDE 614 (986)
T ss_pred cccccccCc
Confidence 888887765
No 63
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=94.81 E-value=0.043 Score=55.92 Aligned_cols=83 Identities=18% Similarity=0.185 Sum_probs=51.4
Q ss_pred HHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEE----EEEecCCCCCCCHHHHHHHHHHHhc-CCCCcEEEeCc
Q 002281 281 KWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVEL----IKIPVEVRTAPTMEQVEKFASLVSN-SSKKPLYLHSK 355 (943)
Q Consensus 281 a~Lk~lGIKTVIDLRse~~ee~~~~a~e~e~~e~~GI~y----IhIPV~d~~~Ps~E~v~aFlelL~d-s~~~PVLVHC~ 355 (943)
++....|-+.++.|+...... ..+.. .....-+++ +..|=..+..|.+++++..++++.. ....|+||||.
T Consensus 26 e~~~rh~~t~mlsl~a~~t~~-~~pa~---~~~erhL~l~fnDI~~~~~g~~ap~e~Hv~~i~DF~~~wp~~apllIHC~ 101 (172)
T COG5350 26 ETAARHGPTHMLSLLAKGTYF-HRPAV---IAAERHLTLHFNDIAEPDDGWIAPGEAHVRAIIDFADEWPRFAPLLIHCY 101 (172)
T ss_pred HHHhhcCCceEEEeecccccc-cCccc---cchhhceeEeeccccCCCccccCCCHHHHHHHHHHHhcCccccceeeeec
Confidence 344456899999999864111 11100 011111222 2222233457889999999999853 34579999999
Q ss_pred cCCchHHHHHHH
Q 002281 356 EGVWRTYAMVSR 367 (943)
Q Consensus 356 AGKDRTGALvaL 367 (943)
+|..|+.++.+.
T Consensus 102 aGISRStA~A~i 113 (172)
T COG5350 102 AGISRSTAAALI 113 (172)
T ss_pred cccccchHHHHH
Confidence 999999966655
No 64
>PRK13054 lipid kinase; Reviewed
Probab=94.73 E-value=0.12 Score=56.88 Aligned_cols=107 Identities=21% Similarity=0.184 Sum_probs=61.3
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEE--cCCh--hhhhhcCCCCccceeeeccCccccccCccEEEEEcCC
Q 002281 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILV--EPDV--HDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGD 765 (943)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~~l~~~L~~~~g~~V~v--e~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIvLGGD 765 (943)
.++++||..++......+.+++.+|.+ .++++.+ .+.- +..+. .....+++|.||++|||
T Consensus 3 ~~~~~~i~N~~~~~~~~~~~~~~~l~~-~g~~~~v~~t~~~~~a~~~a---------------~~~~~~~~d~vvv~GGD 66 (300)
T PRK13054 3 FPKSLLILNGKSAGNEELREAVGLLRE-EGHTLHVRVTWEKGDAARYV---------------EEALALGVATVIAGGGD 66 (300)
T ss_pred CceEEEEECCCccchHHHHHHHHHHHH-cCCEEEEEEecCCCcHHHHH---------------HHHHHcCCCEEEEECCc
Confidence 456666666665444556667777754 4655433 2111 11110 01113457999999999
Q ss_pred chHHHHhhhccCC----CCcEEEEeCCCCcccC-CCC-chhHHHHHHHHHcCC
Q 002281 766 GVILHASNLFRGA----VPPVISFNLGSLGFLT-SHP-FEDYRQDLRQVIYGN 812 (943)
Q Consensus 766 GTiL~Aar~~~~~----~~PVLGIN~GsLGFLt-~~~-~ed~~~~L~~ll~G~ 812 (943)
||+=.+++-+.+. .+|+-=|-.|+---++ .+. +.++.++++.+..|.
T Consensus 67 GTl~evv~~l~~~~~~~~~~lgiiP~GTgNdfar~lgi~~~~~~a~~~i~~g~ 119 (300)
T PRK13054 67 GTINEVATALAQLEGDARPALGILPLGTANDFATAAGIPLEPDKALKLAIEGR 119 (300)
T ss_pred cHHHHHHHHHHhhccCCCCcEEEEeCCcHhHHHHhcCCCCCHHHHHHHHHhCC
Confidence 9998888876532 3455445666532222 121 346778888888776
No 65
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=94.73 E-value=0.094 Score=62.14 Aligned_cols=55 Identities=27% Similarity=0.260 Sum_probs=36.2
Q ss_pred CHHHHHHHHHHHhcC-----------C-CCcEEEeCccCCchHHHHHHHHHHh-cC-CCHHHHHHHhhcc
Q 002281 331 TMEQVEKFASLVSNS-----------S-KKPLYLHSKEGVWRTYAMVSRWRQY-MA-RCASQISGQTITS 386 (943)
Q Consensus 331 s~E~v~aFlelL~ds-----------~-~~PVLVHC~AGKDRTGALvaLlr~~-lG-vs~edAiaDYLls 386 (943)
+.+.+..|++.+... . ..| +|||.+|.+|||++++++... .+ ++.++++.+.=.+
T Consensus 439 ST~~LleLvr~Vr~~~q~~~~~~~~~nk~~P-VVHCSAGVGRTGTFIAi~llk~~~~~sle~IV~dlR~q 507 (535)
T PRK15375 439 STDQLEYLADRVKNSNQNGAPGRSSSDKHLP-MIHCLGGVGRTGTMAAALVLKDNPHSNLEQVRADFRNS 507 (535)
T ss_pred ChHHHHHHHHHHHHhhhcccccccccCCCCc-eEEcCCCCchHHHHHHHHHHhccccCCHHHHHHHHHhc
Confidence 445677776665321 0 135 799999999999888887542 12 6777777765433
No 66
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=94.73 E-value=0.035 Score=57.22 Aligned_cols=39 Identities=21% Similarity=0.259 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHh---cCCCCcEEEeCccCCchHHHHHHHHHH
Q 002281 332 MEQVEKFASLVS---NSSKKPLYLHSKEGVWRTYAMVSRWRQ 370 (943)
Q Consensus 332 ~E~v~aFlelL~---ds~~~PVLVHC~AGKDRTGALvaLlr~ 370 (943)
.+.+..|++.+. +....|++|||.+|.+|||+++++...
T Consensus 152 ~~~~~~~~~~v~~~~~~~~~pivVhc~~G~gRsg~f~~~~~~ 193 (235)
T PF00102_consen 152 PESFLDFIRKVNKSKDDPNGPIVVHCSDGVGRSGTFCAIDIL 193 (235)
T ss_dssp SHHHHHHHHHHHHHHSTTSSEEEEESSSSSHHHHHHHHHHHH
T ss_pred cchhhhhhhhccccccCCccceEeecccccccccccccchhh
Confidence 455555555543 235789999999999999988877654
No 67
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=94.56 E-value=0.04 Score=61.87 Aligned_cols=21 Identities=19% Similarity=0.302 Sum_probs=18.9
Q ss_pred CcEEEeCccCCchHHHHHHHH
Q 002281 348 KPLYLHSKEGVWRTYAMVSRW 368 (943)
Q Consensus 348 ~PVLVHC~AGKDRTGALvaLl 368 (943)
+|++|||.+|.+|||+++++-
T Consensus 248 ~PIvVHCsaGvGRTGtfcaid 268 (323)
T PHA02746 248 GPIVVHCSAGIGRAGTFCAID 268 (323)
T ss_pred CCEEEEcCCCCCcchhHHHHH
Confidence 799999999999999887764
No 68
>PRK13059 putative lipid kinase; Reviewed
Probab=94.47 E-value=0.22 Score=54.86 Aligned_cols=108 Identities=15% Similarity=0.217 Sum_probs=62.3
Q ss_pred CEEEEEecCCh---hHHHHHHHHHHHHhcCCCeEEEE-cCChhhhhhcCCCCccceeeeccCccccccCccEEEEEcCCc
Q 002281 691 RTVLVLKKPGP---ALMEEAKEVASFLYHQEKMNILV-EPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDG 766 (943)
Q Consensus 691 k~VlIv~K~~~---~~~~~a~~l~~~L~~~~g~~V~v-e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIvLGGDG 766 (943)
++++||..|.. ...+.+.++.++|.+ .+.++.+ ......... . ......+.+|.||++||||
T Consensus 2 ~~~~~I~NP~aG~g~~~~~~~~i~~~l~~-~g~~~~~~~~~~~~~~~---------~----~~~~~~~~~d~vi~~GGDG 67 (295)
T PRK13059 2 KKVKFIYNPYSGENAIISELDKVIRIHQE-KGYLVVPYRISLEYDLK---------N----AFKDIDESYKYILIAGGDG 67 (295)
T ss_pred cEEEEEECCcccchhHHHHHHHHHHHHHH-CCcEEEEEEccCcchHH---------H----HHHHhhcCCCEEEEECCcc
Confidence 45677766653 234556778888854 4665443 211111000 0 0111234679999999999
Q ss_pred hHHHHhhhcc--CCCCcEEEEeCCCCcccC-CCC-chhHHHHHHHHHcCC
Q 002281 767 VILHASNLFR--GAVPPVISFNLGSLGFLT-SHP-FEDYRQDLRQVIYGN 812 (943)
Q Consensus 767 TiL~Aar~~~--~~~~PVLGIN~GsLGFLt-~~~-~ed~~~~L~~ll~G~ 812 (943)
|+=.+++-+. +..+|+-=|-.|+-.-++ .+. +.+..++++.+..|.
T Consensus 68 Tv~evv~gl~~~~~~~~lgviP~GTgNdfAr~lgi~~~~~~a~~~i~~g~ 117 (295)
T PRK13059 68 TVDNVVNAMKKLNIDLPIGILPVGTANDFAKFLGMPTDIGEACEQILKSK 117 (295)
T ss_pred HHHHHHHHHHhcCCCCcEEEECCCCHhHHHHHhCCCCCHHHHHHHHHhCC
Confidence 9888887665 334565445667533332 122 456788888888876
No 69
>PHA02738 hypothetical protein; Provisional
Probab=94.39 E-value=0.047 Score=61.21 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=19.0
Q ss_pred CCcEEEeCccCCchHHHHHHHH
Q 002281 347 KKPLYLHSKEGVWRTYAMVSRW 368 (943)
Q Consensus 347 ~~PVLVHC~AGKDRTGALvaLl 368 (943)
.+|++|||.+|.+|||+++++-
T Consensus 227 ~~PIVVHCs~GiGRtGtFcaid 248 (320)
T PHA02738 227 PPPIVVHCNAGLGRTPCYCVVD 248 (320)
T ss_pred CCCeEEEcCCCCChhhhhhHHH
Confidence 4699999999999999777664
No 70
>PLN02160 thiosulfate sulfurtransferase
Probab=93.99 E-value=0.24 Score=48.94 Aligned_cols=86 Identities=16% Similarity=0.302 Sum_probs=50.7
Q ss_pred CCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCC----CCCCHHHHHHHHHHHhcCCCCcE
Q 002281 275 VTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVR----TAPTMEQVEKFASLVSNSSKKPL 350 (943)
Q Consensus 275 pT~eDLa~Lk~lGIKTVIDLRse~~ee~~~~a~e~e~~e~~GI~yIhIPV~d~----~~Ps~E~v~aFlelL~ds~~~PV 350 (943)
++++++..+.+.+ ..|||.|+.. + | ..-...|...+++|.... ...+.+.+..+.+.+ ..+.|+
T Consensus 17 i~~~e~~~~~~~~-~~lIDVR~~~-E---~-----~~ghIpgA~~iniP~~~~~~~~~l~~~~~~~~~~~~~--~~~~~I 84 (136)
T PLN02160 17 VDVSQAKTLLQSG-HQYLDVRTQD-E---F-----RRGHCEAAKIVNIPYMLNTPQGRVKNQEFLEQVSSLL--NPADDI 84 (136)
T ss_pred eCHHHHHHHHhCC-CEEEECCCHH-H---H-----hcCCCCCcceecccchhcCcccccCCHHHHHHHHhcc--CCCCcE
Confidence 5777887776667 4799999975 1 1 011223334567776321 112233333333333 346799
Q ss_pred EEeCccCCchHHHHHHHHHHhcCC
Q 002281 351 YLHSKEGVWRTYAMVSRWRQYMAR 374 (943)
Q Consensus 351 LVHC~AGKDRTGALvaLlr~~lGv 374 (943)
++||..|. |+...+..+.. .|.
T Consensus 85 ivyC~sG~-RS~~Aa~~L~~-~G~ 106 (136)
T PLN02160 85 LVGCQSGA-RSLKATTELVA-AGY 106 (136)
T ss_pred EEECCCcH-HHHHHHHHHHH-cCC
Confidence 99999998 99877666543 454
No 71
>TIGR03702 lip_kinase_YegS lipid kinase YegS. Members of this protein family are designated YegS, an apparent lipid kinase family in the Proteobacteria. Bakali, et al. report phosphatidylglycerol kinase activity for the member from Escherichia coli, but refrain from calling that activity synonymous with its biological role. Note that a broader, subfamily-type model (TIGR00147), includes this family but also multiple paralogs in some species and varied functions.
Probab=93.83 E-value=0.25 Score=54.31 Aligned_cols=59 Identities=19% Similarity=0.234 Sum_probs=38.6
Q ss_pred cCccEEEEEcCCchHHHHhhhccCC----CCcEEEEeCCCCcccC-CCC-chhHHHHHHHHHcCC
Q 002281 754 ERVDFVACLGGDGVILHASNLFRGA----VPPVISFNLGSLGFLT-SHP-FEDYRQDLRQVIYGN 812 (943)
Q Consensus 754 ~~~DlVIvLGGDGTiL~Aar~~~~~----~~PVLGIN~GsLGFLt-~~~-~ed~~~~L~~ll~G~ 812 (943)
++.|.||++|||||+=.++.-+... .+|+-=|-+|+-.=++ .+. +.+..++++.++.|.
T Consensus 51 ~~~d~vv~~GGDGTi~ev~ngl~~~~~~~~~~lgiiP~GTgNdfAr~l~ip~~~~~a~~~i~~g~ 115 (293)
T TIGR03702 51 LGVSTVIAGGGDGTLREVATALAQIRDDAAPALGLLPLGTANDFATAAGIPLEPAKALKLALNGA 115 (293)
T ss_pred cCCCEEEEEcCChHHHHHHHHHHhhCCCCCCcEEEEcCCchhHHHHhcCCCCCHHHHHHHHHhCC
Confidence 4579999999999988888766421 2344434566533222 222 456778888888776
No 72
>PRK13337 putative lipid kinase; Reviewed
Probab=93.72 E-value=0.36 Score=53.36 Aligned_cols=106 Identities=15% Similarity=0.216 Sum_probs=59.5
Q ss_pred CEEEEEecCChh---HHHHHHHHHHHHhcCCCeEE--EEcCChh--hhhhcCCCCccceeeeccCccccccCccEEEEEc
Q 002281 691 RTVLVLKKPGPA---LMEEAKEVASFLYHQEKMNI--LVEPDVH--DIFARIPGFGFVQTFYLQDTSDLHERVDFVACLG 763 (943)
Q Consensus 691 k~VlIv~K~~~~---~~~~a~~l~~~L~~~~g~~V--~ve~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIvLG 763 (943)
++++||..|... ....+.++...|.+ .++++ +..+... ..+. . ....++.|+||++|
T Consensus 2 ~r~~~I~Np~aG~~~~~~~~~~~~~~l~~-~~~~~~~~~t~~~~~a~~~a-------------~--~~~~~~~d~vvv~G 65 (304)
T PRK13337 2 KRARIIYNPTSGRELFKKNLPDVLQKLEQ-AGYETSAHATTGPGDATLAA-------------E--RAVERKFDLVIAAG 65 (304)
T ss_pred ceEEEEECCcccchhHHHHHHHHHHHHHH-cCCEEEEEEecCCCCHHHHH-------------H--HHHhcCCCEEEEEc
Confidence 467777666632 23455677777754 45553 2221111 0110 0 01124579999999
Q ss_pred CCchHHHHhhhccCC--CCcEEEEeCCCCcccCC-CC-chhHHHHHHHHHcCC
Q 002281 764 GDGVILHASNLFRGA--VPPVISFNLGSLGFLTS-HP-FEDYRQDLRQVIYGN 812 (943)
Q Consensus 764 GDGTiL~Aar~~~~~--~~PVLGIN~GsLGFLt~-~~-~ed~~~~L~~ll~G~ 812 (943)
||||+=.++..+... .+|+-=|-.|+---++. +. +.+++++++.+..|.
T Consensus 66 GDGTl~~vv~gl~~~~~~~~lgiiP~GT~NdfAr~lgi~~~~~~a~~~i~~g~ 118 (304)
T PRK13337 66 GDGTLNEVVNGIAEKENRPKLGIIPVGTTNDFARALHVPRDIEKAADVIIEGH 118 (304)
T ss_pred CCCHHHHHHHHHhhCCCCCcEEEECCcCHhHHHHHcCCCCCHHHHHHHHHcCC
Confidence 999988888765432 34544445665433331 11 346778888888776
No 73
>PRK13055 putative lipid kinase; Reviewed
Probab=93.69 E-value=0.44 Score=53.58 Aligned_cols=106 Identities=11% Similarity=0.171 Sum_probs=60.5
Q ss_pred CEEEEEecCCh---hHHHHHHHHHHHHhcCCCeE--EEEcC-C--hhhhhhcCCCCccceeeeccCccccccCccEEEEE
Q 002281 691 RTVLVLKKPGP---ALMEEAKEVASFLYHQEKMN--ILVEP-D--VHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACL 762 (943)
Q Consensus 691 k~VlIv~K~~~---~~~~~a~~l~~~L~~~~g~~--V~ve~-~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIvL 762 (943)
++++||..|.. ...+.+.++...|.+ .+++ ++... . -+..+.. .....++|+||++
T Consensus 3 ~r~~iI~NP~sG~~~~~~~~~~i~~~l~~-~g~~~~i~~t~~~~~~a~~~~~---------------~~~~~~~d~vvv~ 66 (334)
T PRK13055 3 KRARLIYNPTSGQEIMKKNVADILDILEQ-AGYETSAFQTTPEPNSAKNEAK---------------RAAEAGFDLIIAA 66 (334)
T ss_pred ceEEEEECCCCCchhHHHHHHHHHHHHHH-cCCeEEEEEeecCCccHHHHHH---------------HHhhcCCCEEEEE
Confidence 56777777663 234556778888854 4554 33222 1 1111110 0112457999999
Q ss_pred cCCchHHHHhhhccCC--CCcEEEEeCCCCcccC-CCC-ch-hHHHHHHHHHcCC
Q 002281 763 GGDGVILHASNLFRGA--VPPVISFNLGSLGFLT-SHP-FE-DYRQDLRQVIYGN 812 (943)
Q Consensus 763 GGDGTiL~Aar~~~~~--~~PVLGIN~GsLGFLt-~~~-~e-d~~~~L~~ll~G~ 812 (943)
|||||+=.++.-+... .+|+-=|-.|+---++ .+. +. +..++++.+..|.
T Consensus 67 GGDGTl~evvngl~~~~~~~~LgiiP~GTgNdfAr~Lgi~~~~~~~a~~~l~~g~ 121 (334)
T PRK13055 67 GGDGTINEVVNGIAPLEKRPKMAIIPAGTTNDYARALKIPRDNPVEAAKVILKNQ 121 (334)
T ss_pred CCCCHHHHHHHHHhhcCCCCcEEEECCCchhHHHHHcCCCCcCHHHHHHHHHcCC
Confidence 9999998888876542 3443334567533322 121 23 6778888888776
No 74
>KOG0792 consensus Protein tyrosine phosphatase PTPMEG, contains FERM domain [Signal transduction mechanisms]
Probab=93.56 E-value=0.054 Score=67.96 Aligned_cols=36 Identities=19% Similarity=0.336 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhc---CCCCcEEEeCccCCchHHHHHHH
Q 002281 332 MEQVEKFASLVSN---SSKKPLYLHSKEGVWRTYAMVSR 367 (943)
Q Consensus 332 ~E~v~aFlelL~d---s~~~PVLVHC~AGKDRTGALvaL 367 (943)
...+..|++.+.. ..+-||++||.||.+|||+++.+
T Consensus 1045 ~~~FL~FleevrsvR~~t~pPilvHCSAGiGRTGVlIl~ 1083 (1144)
T KOG0792|consen 1045 PNDFLDFLEEVRSVRRGTNPPILVHCSAGIGRTGVLILM 1083 (1144)
T ss_pred hHHHHHHHHHHHHHhccCCCCeEEEccCCCCcceehHHH
Confidence 4455556555532 22569999999999999965543
No 75
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=93.30 E-value=0.27 Score=44.97 Aligned_cols=86 Identities=14% Similarity=0.044 Sum_probs=45.7
Q ss_pred CCHhhHHHHHHcCC-cEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEe
Q 002281 275 VTEEGLKWLMEKGY-KTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLH 353 (943)
Q Consensus 275 pT~eDLa~Lk~lGI-KTVIDLRse~~ee~~~~a~e~e~~e~~GI~yIhIPV~d~~~Ps~E~v~aFlelL~ds~~~PVLVH 353 (943)
++++++..+.+.|= -.|||.|++. + +. .-...| -+++|+......-.+........+ ..++|+++|
T Consensus 1 is~~el~~~l~~~~~~~liDvR~~~-e---~~-----~ghi~g--a~~ip~~~~~~~~~~~~~~~~~~~--~~~~~ivv~ 67 (100)
T cd01523 1 LDPEDLYARLLAGQPLFILDVRNES-D---YE-----RWKIDG--ENNTPYFDPYFDFLEIEEDILDQL--PDDQEVTVI 67 (100)
T ss_pred CCHHHHHHHHHcCCCcEEEEeCCHH-H---Hh-----hcccCC--CcccccccchHHHHHhhHHHHhhC--CCCCeEEEE
Confidence 35667766655542 4799999975 1 11 011122 245665421110000012223333 356799999
Q ss_pred CccCCchHHHHHHHHHHhcCCC
Q 002281 354 SKEGVWRTYAMVSRWRQYMARC 375 (943)
Q Consensus 354 C~AGKDRTGALvaLlr~~lGvs 375 (943)
|..|. |+..++..+.. +|.+
T Consensus 68 C~~G~-rs~~aa~~L~~-~G~~ 87 (100)
T cd01523 68 CAKEG-SSQFVAELLAE-RGYD 87 (100)
T ss_pred cCCCC-cHHHHHHHHHH-cCce
Confidence 99998 88766655543 5653
No 76
>PRK12361 hypothetical protein; Provisional
Probab=93.07 E-value=0.32 Score=58.16 Aligned_cols=108 Identities=15% Similarity=0.192 Sum_probs=63.1
Q ss_pred CCEEEEEecCCh---hHHHHHHHHHHHHhcCCCeEEEEcCCh--hhhhhcCCCCccceeeeccCccccccCccEEEEEcC
Q 002281 690 PRTVLVLKKPGP---ALMEEAKEVASFLYHQEKMNILVEPDV--HDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGG 764 (943)
Q Consensus 690 pk~VlIv~K~~~---~~~~~a~~l~~~L~~~~g~~V~ve~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIvLGG 764 (943)
.++++||..|.. ...+.+.++.+.|.+...++++....- +..+. .....+++|.||++||
T Consensus 242 ~~~~~iI~NP~SG~g~~~~~~~~i~~~L~~~~~~~v~~t~~~~~a~~la---------------~~~~~~~~d~Viv~GG 306 (547)
T PRK12361 242 HKRAWLIANPVSGGGKWQEYGEQIQRELKAYFDLTVKLTTPEISAEALA---------------KQARKAGADIVIACGG 306 (547)
T ss_pred CCceEEEECCCCCCCcHHHHHHHHHHHHhcCCceEEEECCCCccHHHHH---------------HHHHhcCCCEEEEECC
Confidence 356666666653 234566788888864322333322211 01110 0011245799999999
Q ss_pred CchHHHHhhhccCCCCcEEEEeCCCCcccCC-C---C--chhHHHHHHHHHcCC
Q 002281 765 DGVILHASNLFRGAVPPVISFNLGSLGFLTS-H---P--FEDYRQDLRQVIYGN 812 (943)
Q Consensus 765 DGTiL~Aar~~~~~~~PVLGIN~GsLGFLt~-~---~--~ed~~~~L~~ll~G~ 812 (943)
|||+=.++..+.+.++|+-=|-.|+-.-++. + . ..+..++++.+.+|.
T Consensus 307 DGTl~ev~~~l~~~~~~lgiiP~GTgNdfAr~L~gi~~~~~~~~~a~~~i~~g~ 360 (547)
T PRK12361 307 DGTVTEVASELVNTDITLGIIPLGTANALSHALFGLGSKLIPVEQACDNIIQGH 360 (547)
T ss_pred CcHHHHHHHHHhcCCCCEEEecCCchhHHHHHhcCCCCCCccHHHHHHHHHhCC
Confidence 9999999988777677755456675442221 1 1 146778888888776
No 77
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=92.70 E-value=0.46 Score=44.26 Aligned_cols=81 Identities=12% Similarity=0.130 Sum_probs=46.2
Q ss_pred CCCHhhHHHHHHcCC-cEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEE
Q 002281 274 QVTEEGLKWLMEKGY-KTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYL 352 (943)
Q Consensus 274 qpT~eDLa~Lk~lGI-KTVIDLRse~~ee~~~~a~e~e~~e~~GI~yIhIPV~d~~~Ps~E~v~aFlelL~ds~~~PVLV 352 (943)
.++.+++..+.+.|= -.|||.|+.. + |. .....| -+++|+ ..+...+..+....+.|++|
T Consensus 11 ~i~~~~l~~~~~~~~~~~liDvR~~~-e---~~-----~ghIpg--ainip~--------~~l~~~~~~l~~~~~~~ivv 71 (109)
T cd01533 11 SVSADELAALQARGAPLVVLDGRRFD-E---YR-----KMTIPG--SVSCPG--------AELVLRVGELAPDPRTPIVV 71 (109)
T ss_pred cCCHHHHHHHHhcCCCcEEEeCCCHH-H---Hh-----cCcCCC--ceeCCH--------HHHHHHHHhcCCCCCCeEEE
Confidence 567888877666552 3699999865 1 11 011112 234443 23333333332234679999
Q ss_pred eCccCCchHHHHHHHHHHhcCCC
Q 002281 353 HSKEGVWRTYAMVSRWRQYMARC 375 (943)
Q Consensus 353 HC~AGKDRTGALvaLlr~~lGvs 375 (943)
||.+|. |+...+..++ .+|.+
T Consensus 72 ~C~~G~-rs~~a~~~L~-~~G~~ 92 (109)
T cd01533 72 NCAGRT-RSIIGAQSLI-NAGLP 92 (109)
T ss_pred ECCCCc-hHHHHHHHHH-HCCCC
Confidence 999998 8865544443 35653
No 78
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=92.33 E-value=0.49 Score=43.39 Aligned_cols=85 Identities=11% Similarity=0.048 Sum_probs=46.4
Q ss_pred CCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEe
Q 002281 274 QVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLH 353 (943)
Q Consensus 274 qpT~eDLa~Lk~lGIKTVIDLRse~~ee~~~~a~e~e~~e~~GI~yIhIPV~d~~~Ps~E~v~aFlelL~ds~~~PVLVH 353 (943)
.++++++..+.+.+=-.|||.|++. + +. .....| -+++|+..... ..+.+.+ +.....++|++||
T Consensus 3 ~is~~~l~~~~~~~~~~iiDvR~~~-e---~~-----~ghi~g--A~~ip~~~~~~-~~~~~~~---~~~~~~~~~ivvy 67 (101)
T cd01518 3 YLSPAEWNELLEDPEVVLLDVRNDY-E---YD-----IGHFKG--AVNPDVDTFRE-FPFWLDE---NLDLLKGKKVLMY 67 (101)
T ss_pred cCCHHHHHHHHcCCCEEEEEcCChh-h---hh-----cCEecc--ccCCCcccHhH-hHHHHHh---hhhhcCCCEEEEE
Confidence 4677777776555445899999875 1 11 011122 35566642110 0111222 1111456799999
Q ss_pred CccCCchHHHHHHHHHHhcCCC
Q 002281 354 SKEGVWRTYAMVSRWRQYMARC 375 (943)
Q Consensus 354 C~AGKDRTGALvaLlr~~lGvs 375 (943)
|.+|. |+...+..+ ..+|..
T Consensus 68 C~~G~-rs~~a~~~L-~~~G~~ 87 (101)
T cd01518 68 CTGGI-RCEKASAYL-KERGFK 87 (101)
T ss_pred CCCch-hHHHHHHHH-HHhCCc
Confidence 99998 998665544 334653
No 79
>KOG2386 consensus mRNA capping enzyme, guanylyltransferase (alpha) subunit [RNA processing and modification]
Probab=92.24 E-value=0.16 Score=58.65 Aligned_cols=103 Identities=18% Similarity=0.242 Sum_probs=68.4
Q ss_pred CCHhh-HHHHHHcC--CcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCC-CCCHHHHHHHHHHHhc------
Q 002281 275 VTEEG-LKWLMEKG--YKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRT-APTMEQVEKFASLVSN------ 344 (943)
Q Consensus 275 pT~eD-La~Lk~lG--IKTVIDLRse~~ee~~~~a~e~e~~e~~GI~yIhIPV~d~~-~Ps~E~v~aFlelL~d------ 344 (943)
.++.+ +..|+++| +--+|||.... ..|. ....+..|+.|+.+--.... .|+.+.+..|..+++.
T Consensus 48 f~~~dl~~~l~~~~~~vgl~iDltnt~---ryy~---~~~~~~~g~~Y~K~~c~g~~~vp~~~~v~~fv~~v~~f~~~~~ 121 (393)
T KOG2386|consen 48 FQPKDLFELLKEHNYKVGLKIDLTNTL---RYYD---KPELEERGVKYLKRNCPGRGVVPRTELVDKFVKLVKGFVDDTK 121 (393)
T ss_pred cCHHHHHHHHHhcCceEEEEEecccee---eeec---cccccccceeEEEeccCCcccCCCccchHHHHHHHHHHHhccc
Confidence 34444 56677764 45689997654 2231 23467789999998876554 6777777777776542
Q ss_pred CCCCcEEEeCccCCchHHHH-HHHHHHhcCCCHHHHHHHh
Q 002281 345 SSKKPLYLHSKEGVWRTYAM-VSRWRQYMARCASQISGQT 383 (943)
Q Consensus 345 s~~~PVLVHC~AGKDRTGAL-vaLlr~~lGvs~edAiaDY 383 (943)
..+.=|++||++|+.|||-| ++++..-.+++..+|++-+
T Consensus 122 ~~~~LI~vhcthG~NrtgyLI~~yL~~~~~~s~~~aik~f 161 (393)
T KOG2386|consen 122 LDDELIGVHCTHGLNRTGYLICAYLADVGGYSSSEAIKRF 161 (393)
T ss_pred CCCCEEEEeCCCcccccceeeeeeeeeccCccHHHHHHHH
Confidence 12345899999999999944 4444344568888886643
No 80
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=91.81 E-value=0.93 Score=53.87 Aligned_cols=114 Identities=17% Similarity=0.193 Sum_probs=63.4
Q ss_pred cccccCCCEEEEEecCCh---hHHHHH-HHHHHHHhcCCCeEEEEc--CChhh--hhhcCCCCccceeeeccCccccccC
Q 002281 684 LMWKTTPRTVLVLKKPGP---ALMEEA-KEVASFLYHQEKMNILVE--PDVHD--IFARIPGFGFVQTFYLQDTSDLHER 755 (943)
Q Consensus 684 l~w~~~pk~VlIv~K~~~---~~~~~a-~~l~~~L~~~~g~~V~ve--~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~ 755 (943)
|.+...||+++||..|.. ...... .++...|.+ .++++.+. ....+ .+. . +....+
T Consensus 105 ~~~~~~~kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~-~gi~~~v~~T~~~ghA~~la-------------~--~~~~~~ 168 (481)
T PLN02958 105 LDSLGRPKRLLVFVNPFGGKKSASKIFFDVVKPLLED-ADIQLTIQETKYQLHAKEVV-------------R--TMDLSK 168 (481)
T ss_pred HhhccCCcEEEEEEcCCCCCcchhHHHHHHHHHHHHH-cCCeEEEEeccCccHHHHHH-------------H--HhhhcC
Confidence 344456899998877763 233433 346657754 46554332 22111 110 0 001245
Q ss_pred ccEEEEEcCCchHHHHhhhccCC-------CCcEEEEeCCCC-cccCCC----C-chhHHHHHHHHHcCCC
Q 002281 756 VDFVACLGGDGVILHASNLFRGA-------VPPVISFNLGSL-GFLTSH----P-FEDYRQDLRQVIYGNN 813 (943)
Q Consensus 756 ~DlVIvLGGDGTiL~Aar~~~~~-------~~PVLGIN~GsL-GFLt~~----~-~ed~~~~L~~ll~G~~ 813 (943)
+|.||++||||||=.+++-+... .+|+-=|-.|+- +|-..+ . +.+..+++..++.|..
T Consensus 169 ~D~VV~vGGDGTlnEVvNGL~~~~~~~~~~~~pLGiIPaGTgNdfArsL~~~~gip~~~~~A~~~I~~g~~ 239 (481)
T PLN02958 169 YDGIVCVSGDGILVEVVNGLLEREDWKTAIKLPIGMVPAGTGNGMAKSLLDSVGEPCSATNAVLAIIRGHK 239 (481)
T ss_pred CCEEEEEcCCCHHHHHHHHHhhCccccccccCceEEecCcCcchhhhhhccccCCCcCHHHHHHHHHcCCc
Confidence 79999999999988777765432 355544456642 222222 1 4466778888888863
No 81
>KOG0791 consensus Protein tyrosine phosphatase, contains fn3 domain [Signal transduction mechanisms]
Probab=91.77 E-value=0.2 Score=57.05 Aligned_cols=46 Identities=28% Similarity=0.371 Sum_probs=31.2
Q ss_pred CCCCCCC-HHHHHHHHHHHh---cCCCCcEEEeCccCCchHHHHHHHHHH
Q 002281 325 EVRTAPT-MEQVEKFASLVS---NSSKKPLYLHSKEGVWRTYAMVSRWRQ 370 (943)
Q Consensus 325 ~d~~~Ps-~E~v~aFlelL~---ds~~~PVLVHC~AGKDRTGALvaLlr~ 370 (943)
.+...|+ ...+.+|...+. +....|++|||.+|.+|||++.|+=++
T Consensus 261 Pd~gvp~~~~sl~~f~~~~r~~~~~~~~p~iVhCSAGVgRTGTFiald~L 310 (374)
T KOG0791|consen 261 PDFGVPSSTESLLQFVRMVRQSLDTSKGPTIVHCSAGVGRTGTFIALDRL 310 (374)
T ss_pred cccCCCCCchhHHHHHHHHHhhcccCCCceeEEeecccccccchHhHHHH
Confidence 3444443 344555555543 345789999999999999988777544
No 82
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=91.50 E-value=0.19 Score=48.60 Aligned_cols=36 Identities=25% Similarity=0.386 Sum_probs=27.0
Q ss_pred ccEEEEEcCCchHHHHhhhccCCCC----cEEEEeCCCCc
Q 002281 756 VDFVACLGGDGVILHASNLFRGAVP----PVISFNLGSLG 791 (943)
Q Consensus 756 ~DlVIvLGGDGTiL~Aar~~~~~~~----PVLGIN~GsLG 791 (943)
.|.||++|||||+=.++..+..... |+.=|-+|+--
T Consensus 55 ~~~ivv~GGDGTl~~vv~~l~~~~~~~~~~l~iiP~GT~N 94 (130)
T PF00781_consen 55 PDVIVVVGGDGTLNEVVNGLMGSDREDKPPLGIIPAGTGN 94 (130)
T ss_dssp -SEEEEEESHHHHHHHHHHHCTSTSSS--EEEEEE-SSS-
T ss_pred ccEEEEEcCccHHHHHHHHHhhcCCCccceEEEecCCChh
Confidence 5999999999999999998876554 66666777543
No 83
>PLN02204 diacylglycerol kinase
Probab=91.31 E-value=0.77 Score=55.82 Aligned_cols=109 Identities=23% Similarity=0.377 Sum_probs=58.5
Q ss_pred cceeEeeecCcceeeeee---cCCCccccCCchhhHhccc-----------ccCCCEEEEEecCCh---hHHHHHHHHHH
Q 002281 650 AEMFLVRTDGFSCNREKV---TESSLAFTHPSTQQQMLMW-----------KTTPRTVLVLKKPGP---ALMEEAKEVAS 712 (943)
Q Consensus 650 ~~~~~~r~~~~~c~r~~~---~~s~~~~~~ps~~~~~l~w-----------~~~pk~VlIv~K~~~---~~~~~a~~l~~ 712 (943)
.+|+.+--.++.++|-.. ....+.|.|++.+. -..| ..+||+++||..|.. ...+...+++.
T Consensus 106 ~~~~~f~v~~~~~~~~~~~~w~~~~~~f~~~d~~~-~~~w~~~l~~~l~~~~~r~k~llVivNP~sGkg~~~~~~~~V~p 184 (601)
T PLN02204 106 QEMYRFTVHGFQRSRKEPCLWVLAVYTFGHKDLQT-CQSWVDRLNASLNKEVGRPKNLLVFVHPLSGKGSGSRTWETVSP 184 (601)
T ss_pred ccceeeEEEEeeecccCCCcceeEEEeecCCCHHH-HHHHHHHHHHHHhhccCCCceEEEEECCCCCCcchHHHHHHHHH
Confidence 455544444444444332 22346666665543 1223 246889998877763 23455567777
Q ss_pred HHhcCCCeE--EEEcCChhh---hhhcCCCCccceeeeccCccccccCccEEEEEcCCchHHHHhh
Q 002281 713 FLYHQEKMN--ILVEPDVHD---IFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILHASN 773 (943)
Q Consensus 713 ~L~~~~g~~--V~ve~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIvLGGDGTiL~Aar 773 (943)
.|.+ .+++ |++.....+ .+... .....+.+|.||++||||||=.+++
T Consensus 185 ~f~~-a~i~~~v~~T~~aghA~d~~~~~-------------~~~~l~~~D~VVaVGGDGt~nEVlN 236 (601)
T PLN02204 185 IFIR-AKVKTKVIVTERAGHAFDVMASI-------------SNKELKSYDGVIAVGGDGFFNEILN 236 (601)
T ss_pred HHHH-cCCeEEEEEecCcchHHHHHHHH-------------hhhhccCCCEEEEEcCccHHHHHHH
Confidence 7754 3444 554433211 11100 0011346899999999999765555
No 84
>KOG0789 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=90.95 E-value=0.31 Score=55.30 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=19.5
Q ss_pred CCCcEEEeCccCCchHHHHHHHH
Q 002281 346 SKKPLYLHSKEGVWRTYAMVSRW 368 (943)
Q Consensus 346 ~~~PVLVHC~AGKDRTGALvaLl 368 (943)
..+|++|||.+|.+|||+++++-
T Consensus 298 ~~~P~vVhcsaG~gRtgt~v~~~ 320 (415)
T KOG0789|consen 298 KQEPIEVHCSAGAGRAGTLVLIE 320 (415)
T ss_pred CCCCeEEECCCCCCccchHHHHH
Confidence 45799999999999999777643
No 85
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=90.93 E-value=1 Score=42.56 Aligned_cols=96 Identities=11% Similarity=0.012 Sum_probs=49.2
Q ss_pred CCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCC---------CCCCHHHHHHHHHHHhcC
Q 002281 275 VTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVR---------TAPTMEQVEKFASLVSNS 345 (943)
Q Consensus 275 pT~eDLa~Lk~lGIKTVIDLRse~~ee~~~~a~e~e~~e~~GI~yIhIPV~d~---------~~Ps~E~v~aFlelL~ds 345 (943)
++++++..+...+--.|||.|+.+ +... ...+-......| -+++|.... ..++.+.+.+++....-.
T Consensus 2 i~~~~l~~~l~~~~~~ivDvR~~~-~~~~-~~~~~~~ghI~g--a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (122)
T cd01448 2 VSPDWLAEHLDDPDVRILDARWYL-PDRD-GRKEYLEGHIPG--AVFFDLDEDLDDKSPGPHMLPSPEEFAELLGSLGIS 77 (122)
T ss_pred cCHHHHHHHhCCCCeEEEEeecCC-CCCc-hhhHHhhCCCCC--CEEcChhhccccCCCCCCCCCCHHHHHHHHHHcCCC
Confidence 355666655444335799999974 1100 000001112223 255664321 124456666666544334
Q ss_pred CCCcEEEeCccCCchHHHHHHHHHHhcCCC
Q 002281 346 SKKPLYLHSKEGVWRTYAMVSRWRQYMARC 375 (943)
Q Consensus 346 ~~~PVLVHC~AGKDRTGALvaLlr~~lGvs 375 (943)
.+.||+++|..|-.|+..++..+ ..+|.+
T Consensus 78 ~~~~vv~~c~~g~~~a~~~~~~l-~~~G~~ 106 (122)
T cd01448 78 NDDTVVVYDDGGGFFAARAWWTL-RYFGHE 106 (122)
T ss_pred CCCEEEEECCCCCccHHHHHHHH-HHcCCC
Confidence 57899999999733554444333 445654
No 86
>PRK01415 hypothetical protein; Validated
Probab=90.93 E-value=1.6 Score=47.93 Aligned_cols=167 Identities=13% Similarity=0.052 Sum_probs=84.4
Q ss_pred cCCchhhhhhhhhhhhhHHHHHHHhccCCCC-Cchhh-----HHHHHHHHhh--hcccCCCCCCCCCCCCcCCCCceeee
Q 002281 181 QLPPLAIFRSEMKRCCESMHIALENYLTPED-VRSLD-----VWRKLQRLKN--VCYDSGFPRGDDYPIHTLFANWSPVY 252 (943)
Q Consensus 181 ~~p~l~l~r~~l~~~~~~l~~~l~~yl~p~~-~~sl~-----v~rkLqr~~n--~~~d~g~pR~~g~p~~t~iaNwr~V~ 252 (943)
.+++...+|..+..+|+.+.+..-=|+++++ -.++. |..=++.+++ .+-|+.+ -...++..+|...+.-.
T Consensus 15 ~i~~~~~~~~~l~~~~~~~~~~G~i~la~EGIN~tisg~~~~~~~~~~~l~~~~~~~~~~~--k~s~~~~~~F~~l~vr~ 92 (247)
T PRK01415 15 NIEEPANLIPKLLLIGKRKYVRGTILLANEGFNGSFSGSYENVNLVLEELIKLTGPKDVNV--KINYSDVHPFQKLKVRL 92 (247)
T ss_pred cCCCHHHHHHHHHHHHHHcCCeeEEEEccCccceEeeCCHHHHHHHHHHHHhCcCCCCcee--ecccccCCCCCccEEEe
Confidence 3556778899999999998888888888887 11111 1112222322 1111111 22233333333322211
Q ss_pred ccCCccccccCCCcceEEEcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCH
Q 002281 253 LSNSKDDIASKDSEVTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTM 332 (943)
Q Consensus 253 l~~~~d~~~~~~~e~~LYRSGqpT~eDLa~Lk~lGIKTVIDLRse~~ee~~~~a~e~e~~e~~GI~yIhIPV~d~~~Ps~ 332 (943)
-.-+....... ..+..-++-.++++++..+.+..=-.|||.|.+. |-. .-...| -+++|+.
T Consensus 93 k~eiV~~g~~~-~~~~~~~g~~i~p~e~~~ll~~~~~vvIDVRn~~-E~~--------~Ghi~g--Ainip~~------- 153 (247)
T PRK01415 93 KKEIVAMNVDD-LNVDLFKGEYIEPKDWDEFITKQDVIVIDTRNDY-EVE--------VGTFKS--AINPNTK------- 153 (247)
T ss_pred eceEEecCCCC-CCccccCccccCHHHHHHHHhCCCcEEEECCCHH-HHh--------cCCcCC--CCCCChH-------
Confidence 00000000000 0111124557899999888776556799999975 110 000111 1334433
Q ss_pred HHHHHHHHH----HhcCCCCcEEEeCccCCchHHHHHHHHHH
Q 002281 333 EQVEKFASL----VSNSSKKPLYLHSKEGVWRTYAMVSRWRQ 370 (943)
Q Consensus 333 E~v~aFlel----L~ds~~~PVLVHC~AGKDRTGALvaLlr~ 370 (943)
.+.+|-+. .....++||+++|++|. |+-.++..++.
T Consensus 154 -~f~e~~~~~~~~~~~~k~k~Iv~yCtgGi-Rs~kAa~~L~~ 193 (247)
T PRK01415 154 -TFKQFPAWVQQNQELLKGKKIAMVCTGGI-RCEKSTSLLKS 193 (247)
T ss_pred -HHhhhHHHHhhhhhhcCCCeEEEECCCCh-HHHHHHHHHHH
Confidence 22222111 11235789999999998 98877666654
No 87
>KOG0790 consensus Protein tyrosine phosphatase Corkscrew and related SH2 domain enzymes [Signal transduction mechanisms]
Probab=90.91 E-value=0.25 Score=57.45 Aligned_cols=31 Identities=26% Similarity=0.321 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhc-----CCCCcEEEeCccCCchHH
Q 002281 332 MEQVEKFASLVSN-----SSKKPLYLHSKEGVWRTY 362 (943)
Q Consensus 332 ~E~v~aFlelL~d-----s~~~PVLVHC~AGKDRTG 362 (943)
+-.+..|++-+.. ...+||.|||+||.+|||
T Consensus 431 Pg~vLnFLe~V~~rq~~l~~AgpIvVHCSAGIGrTG 466 (600)
T KOG0790|consen 431 PGGVLNFLEEVNHRQESLMDAGPIVVHCSAGIGRTG 466 (600)
T ss_pred ccHHHHHHHHhhhhhccccccCcEEEEccCCcCCcc
Confidence 4456677766532 134799999999999999
No 88
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=90.61 E-value=1.5 Score=48.98 Aligned_cols=59 Identities=25% Similarity=0.399 Sum_probs=42.7
Q ss_pred cCccEEEEEcCCchHHHHhhhccCCCCcEEEE-eCCCCcccC---CCCchhHHHHHHHHHcCC
Q 002281 754 ERVDFVACLGGDGVILHASNLFRGAVPPVISF-NLGSLGFLT---SHPFEDYRQDLRQVIYGN 812 (943)
Q Consensus 754 ~~~DlVIvLGGDGTiL~Aar~~~~~~~PVLGI-N~GsLGFLt---~~~~ed~~~~L~~ll~G~ 812 (943)
.+.|.||+.|||||+=.++.-+.....|.||| -+|+.-=++ .++.+++.++++.+.+|.
T Consensus 57 ~~~D~via~GGDGTv~evingl~~~~~~~LgilP~GT~NdfAr~Lgip~~~~~~Al~~i~~g~ 119 (301)
T COG1597 57 EGYDTVIAAGGDGTVNEVANGLAGTDDPPLGILPGGTANDFARALGIPLDDIEAALELIKSGE 119 (301)
T ss_pred cCCCEEEEecCcchHHHHHHHHhcCCCCceEEecCCchHHHHHHcCCCchhHHHHHHHHHcCC
Confidence 37899999999999998888777666553555 356433222 245556889999998876
No 89
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=90.11 E-value=0.33 Score=47.03 Aligned_cols=35 Identities=34% Similarity=0.535 Sum_probs=26.7
Q ss_pred CccEEEEEcCCchHHHHhhhccCCC-----CcEEEEeCCC
Q 002281 755 RVDFVACLGGDGVILHASNLFRGAV-----PPVISFNLGS 789 (943)
Q Consensus 755 ~~DlVIvLGGDGTiL~Aar~~~~~~-----~PVLGIN~Gs 789 (943)
..|.||++|||||+=.++.-+.... +|+.=|-+|+
T Consensus 49 ~~d~vvv~GGDGTi~~vvn~l~~~~~~~~~~plgiiP~GT 88 (124)
T smart00046 49 KFDRVLVCGGDGTVGWVLNALDKRELPLPEPPVAVLPLGT 88 (124)
T ss_pred cCCEEEEEccccHHHHHHHHHHhcccccCCCcEEEeCCCC
Confidence 4689999999999998888765433 5666666774
No 90
>PRK05320 rhodanese superfamily protein; Provisional
Probab=87.75 E-value=1.2 Score=48.85 Aligned_cols=174 Identities=13% Similarity=0.104 Sum_probs=82.7
Q ss_pred cCCchhhhhhhhhhhhhHHHHHHHhccCCCC-CchhhH-HHHHHHHhhhcccCCCCCCCCCCC---CcCCCCceeeeccC
Q 002281 181 QLPPLAIFRSEMKRCCESMHIALENYLTPED-VRSLDV-WRKLQRLKNVCYDSGFPRGDDYPI---HTLFANWSPVYLSN 255 (943)
Q Consensus 181 ~~p~l~l~r~~l~~~~~~l~~~l~~yl~p~~-~~sl~v-~rkLqr~~n~~~d~g~pR~~g~p~---~t~iaNwr~V~l~~ 255 (943)
.+++...+|..+..+|+.+.+..-=|+++++ -.++.. ..++..+...... .|+..+... ...-+-|..+...-
T Consensus 13 ~i~~~~~~~~~~~~~~~~~~~~G~i~ia~eGiN~t~~g~~~~id~~~~~l~~--~~~~~dl~~k~~~~~~~pF~~l~vk~ 90 (257)
T PRK05320 13 SLDDPETLRPLVLARCEALGLKGTILLAPEGINLFLAGTREAIDAFYAWLRA--DARFADLQVKESLSDSQPFRRMLVKL 90 (257)
T ss_pred ecCCHHHHHHHHHHHHHHCCCeEEEEEcCCCceEEEEeeHHHHHHHHHHHhh--CCCccCceeecccccCCCchhccchh
Confidence 3456677888899999888888888888887 111111 2233333322111 122222111 11112233311000
Q ss_pred Cccc---cccCCCcceEEEcCCCCHhhHHHHHHcCC------cEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCC
Q 002281 256 SKDD---IASKDSEVTFCRGGQVTEEGLKWLMEKGY------KTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEV 326 (943)
Q Consensus 256 ~~d~---~~~~~~e~~LYRSGqpT~eDLa~Lk~lGI------KTVIDLRse~~ee~~~~a~e~e~~e~~GI~yIhIPV~d 326 (943)
++. .+........-+...++++++..+.+.+- -.|||.|... |-. .-...| -+++|+..
T Consensus 91 -k~eiv~~g~~~~n~~~~~~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~-E~~--------~Ghi~G--AiniPl~~ 158 (257)
T PRK05320 91 -KREIITMKRPAIRPELGRAPSVDAATLKRWLDQGHDDAGRPVVMLDTRNAF-EVD--------VGTFDG--ALDYRIDK 158 (257)
T ss_pred -hhHHhhcCCcccCcccCcCceeCHHHHHHHHhccccccCCCeEEEECCCHH-HHc--------cCccCC--CEeCChhH
Confidence 000 00000001111334678888877665542 3689999975 110 011122 35666642
Q ss_pred CCCCCHHHHHHHHHHHhcCCCCcEEEeCccCCchHHHHHHHHHHhcCC
Q 002281 327 RTAPTMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMAR 374 (943)
Q Consensus 327 ~~~Ps~E~v~aFlelL~ds~~~PVLVHC~AGKDRTGALvaLlr~~lGv 374 (943)
... .++.+.. ......++||+++|+.|. |+-.++..++. .|.
T Consensus 159 f~~-~~~~l~~---~~~~~kdk~IvvyC~~G~-Rs~~Aa~~L~~-~Gf 200 (257)
T PRK05320 159 FTE-FPEALAA---HRADLAGKTVVSFCTGGI-RCEKAAIHMQE-VGI 200 (257)
T ss_pred hhh-hHHHHHh---hhhhcCCCeEEEECCCCH-HHHHHHHHHHH-cCC
Confidence 110 0111111 111124689999999998 98877666644 343
No 91
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=87.34 E-value=1.6 Score=39.79 Aligned_cols=76 Identities=20% Similarity=0.257 Sum_probs=45.9
Q ss_pred HhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcE-EEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCc
Q 002281 277 EEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVE-LIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSK 355 (943)
Q Consensus 277 ~eDLa~Lk~lGIKTVIDLRse~~ee~~~~a~e~e~~e~~GI~-yIhIPV~d~~~Ps~E~v~aFlelL~ds~~~PVLVHC~ 355 (943)
......+...+--.|||.|.+. + |. ..+-.. .+|+|+........... ...++|++++|.
T Consensus 9 ~~~~~~~~~~~~~~liDvR~~~-e---~~-------~~~i~~~~~~ip~~~~~~~~~~~~--------~~~~~~ivv~C~ 69 (110)
T COG0607 9 EDEAALLLAGEDAVLLDVREPE-E---YE-------RGHIPGAAINIPLSELKAAENLLE--------LPDDDPIVVYCA 69 (110)
T ss_pred HHHHHHhhccCCCEEEeccChh-H---hh-------hcCCCcceeeeecccchhhhcccc--------cCCCCeEEEEeC
Confidence 3344555556778999999974 1 11 111122 78888873221100000 245789999999
Q ss_pred cCCchHHHHHHHHHHhcC
Q 002281 356 EGVWRTYAMVSRWRQYMA 373 (943)
Q Consensus 356 AGKDRTGALvaLlr~~lG 373 (943)
+|. |++..+..+.. .|
T Consensus 70 ~G~-rS~~aa~~L~~-~G 85 (110)
T COG0607 70 SGV-RSAAAAAALKL-AG 85 (110)
T ss_pred CCC-ChHHHHHHHHH-cC
Confidence 999 98877666655 34
No 92
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=87.29 E-value=2.4 Score=38.83 Aligned_cols=81 Identities=11% Similarity=0.204 Sum_probs=45.1
Q ss_pred CCCHhhHHHHHHcC--CcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhc-CCCCcE
Q 002281 274 QVTEEGLKWLMEKG--YKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSN-SSKKPL 350 (943)
Q Consensus 274 qpT~eDLa~Lk~lG--IKTVIDLRse~~ee~~~~a~e~e~~e~~GI~yIhIPV~d~~~Ps~E~v~aFlelL~d-s~~~PV 350 (943)
|++++++..+.+.+ --.|||.|+.. + +. .....|. +++|.. .+..+.+.+.. ..+.|+
T Consensus 1 ~i~~~~l~~~~~~~~~~~~iiDvR~~~-e---~~-----~~hI~ga--~~ip~~--------~~~~~~~~~~~~~~~~~v 61 (101)
T cd01528 1 QISVAELAEWLADEREEPVLIDVREPE-E---LE-----IAFLPGF--LHLPMS--------EIPERSKELDSDNPDKDI 61 (101)
T ss_pred CCCHHHHHHHHhcCCCCCEEEECCCHH-H---Hh-----cCcCCCC--EecCHH--------HHHHHHHHhcccCCCCeE
Confidence 56777777665554 34799999864 1 11 0112222 344432 33333444422 247799
Q ss_pred EEeCccCCchHHHHHHHHHHhcCCC
Q 002281 351 YLHSKEGVWRTYAMVSRWRQYMARC 375 (943)
Q Consensus 351 LVHC~AGKDRTGALvaLlr~~lGvs 375 (943)
+++|..|. |+-..+..+.. .|.+
T Consensus 62 v~~c~~g~-rs~~~~~~l~~-~G~~ 84 (101)
T cd01528 62 VVLCHHGG-RSMQVAQWLLR-QGFE 84 (101)
T ss_pred EEEeCCCc-hHHHHHHHHHH-cCCc
Confidence 99999996 87655444443 4544
No 93
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=87.18 E-value=2 Score=39.38 Aligned_cols=87 Identities=24% Similarity=0.221 Sum_probs=45.2
Q ss_pred CHhhHHHHHH-cCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCC---CCCHHHHHHHHHHHhcCCCCcEE
Q 002281 276 TEEGLKWLME-KGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRT---APTMEQVEKFASLVSNSSKKPLY 351 (943)
Q Consensus 276 T~eDLa~Lk~-lGIKTVIDLRse~~ee~~~~a~e~e~~e~~GI~yIhIPV~d~~---~Ps~E~v~aFlelL~ds~~~PVL 351 (943)
+.+++..+.+ .+=-+|||.|+.. + +. .-...|. +++|+.... .++.+.+.+++.......+.||+
T Consensus 2 ~~~~~~~~l~~~~~~~iiDvR~~~-e---~~-----~ghIpgA--~~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv 70 (106)
T cd01519 2 SFEEVKNLPNPHPNKVLIDVREPE-E---LK-----TGKIPGA--INIPLSSLPDALALSEEEFEKKYGFPKPSKDKELI 70 (106)
T ss_pred cHHHHHHhcCCCCCEEEEECCCHH-H---Hh-----cCcCCCc--EEechHHhhhhhCCCHHHHHHHhcccCCCCCCeEE
Confidence 3455555544 4335799999874 1 11 0111222 556654221 22334444443332223467999
Q ss_pred EeCccCCchHHHHHHHHHHhcCCC
Q 002281 352 LHSKEGVWRTYAMVSRWRQYMARC 375 (943)
Q Consensus 352 VHC~AGKDRTGALvaLlr~~lGvs 375 (943)
++|..|. |+..++.++ ..+|..
T Consensus 71 v~c~~g~-~s~~~~~~l-~~~G~~ 92 (106)
T cd01519 71 FYCKAGV-RSKAAAELA-RSLGYE 92 (106)
T ss_pred EECCCcH-HHHHHHHHH-HHcCCc
Confidence 9999987 776544433 445643
No 94
>KOG0793 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=85.84 E-value=1.1 Score=54.82 Aligned_cols=32 Identities=22% Similarity=0.342 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhcC---CCCcEEEeCccCCchHHH
Q 002281 332 MEQVEKFASLVSNS---SKKPLYLHSKEGVWRTYA 363 (943)
Q Consensus 332 ~E~v~aFlelL~ds---~~~PVLVHC~AGKDRTGA 363 (943)
...+..|++-++.. ..-||+|||..|.+|||+
T Consensus 909 arslLdFRRKVNK~YRGRScpIiVH~sdGaGRTG~ 943 (1004)
T KOG0793|consen 909 ARSLLDFRRKVNKCYRGRSCPIIVHCSDGAGRTGT 943 (1004)
T ss_pred hHHHHHHHHHhhhhccCCCCceEEEccCCCCccce
Confidence 34566777766432 245999999999999994
No 95
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=85.73 E-value=3.7 Score=36.82 Aligned_cols=79 Identities=13% Similarity=0.223 Sum_probs=41.9
Q ss_pred CCHhhHHHHHHcCC-cEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEe
Q 002281 275 VTEEGLKWLMEKGY-KTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLH 353 (943)
Q Consensus 275 pT~eDLa~Lk~lGI-KTVIDLRse~~ee~~~~a~e~e~~e~~GI~yIhIPV~d~~~Ps~E~v~aFlelL~ds~~~PVLVH 353 (943)
++++++..+.+.+- -.|||.|+.. + +. . ......| -+++|.. .+......+ ..+.|++||
T Consensus 2 i~~~~~~~~~~~~~~~~ivDvR~~~-e---~~--~-~~~hi~g--a~~ip~~--------~~~~~~~~~--~~~~~ivv~ 62 (96)
T cd01444 2 ISVDELAELLAAGEAPVLLDVRDPA-S---YA--A-LPDHIPG--AIHLDED--------SLDDWLGDL--DRDRPVVVY 62 (96)
T ss_pred cCHHHHHHHHhcCCCcEEEECCCHH-H---Hh--c-ccCCCCC--CeeCCHH--------HHHHHHhhc--CCCCCEEEE
Confidence 46667766554432 4699999864 1 10 0 0000111 2333332 344444333 357799999
Q ss_pred CccCCchHHHHHHHHHHhcCC
Q 002281 354 SKEGVWRTYAMVSRWRQYMAR 374 (943)
Q Consensus 354 C~AGKDRTGALvaLlr~~lGv 374 (943)
|..|. |+..++..+.. +|.
T Consensus 63 c~~g~-~s~~a~~~l~~-~G~ 81 (96)
T cd01444 63 CYHGN-SSAQLAQALRE-AGF 81 (96)
T ss_pred eCCCC-hHHHHHHHHHH-cCC
Confidence 99887 77655544443 454
No 96
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=85.67 E-value=3.7 Score=37.28 Aligned_cols=78 Identities=19% Similarity=0.155 Sum_probs=41.2
Q ss_pred CHhhHHHHHHcC--CcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEe
Q 002281 276 TEEGLKWLMEKG--YKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLH 353 (943)
Q Consensus 276 T~eDLa~Lk~lG--IKTVIDLRse~~ee~~~~a~e~e~~e~~GI~yIhIPV~d~~~Ps~E~v~aFlelL~ds~~~PVLVH 353 (943)
+++++..+.+.+ --.+||.|+.. + |. .....| -+++|.. .+..-...+....+.|++++
T Consensus 2 s~~~l~~~~~~~~~~~~liDvR~~~-e---~~-----~ghipg--a~~ip~~--------~l~~~~~~~~~~~~~~iv~~ 62 (95)
T cd01534 2 GAAELARWAAEGDRTVYRFDVRTPE-E---YE-----AGHLPG--FRHTPGG--------QLVQETDHFAPVRGARIVLA 62 (95)
T ss_pred CHHHHHHHHHcCCCCeEEEECCCHH-H---HH-----hCCCCC--cEeCCHH--------HHHHHHHHhcccCCCeEEEE
Confidence 566776666554 34689999864 1 11 011222 2445542 12111111212236799999
Q ss_pred CccCCchHHHHHHHHHHhcCC
Q 002281 354 SKEGVWRTYAMVSRWRQYMAR 374 (943)
Q Consensus 354 C~AGKDRTGALvaLlr~~lGv 374 (943)
|..|. |+...+..+ ..+|.
T Consensus 63 c~~G~-rs~~aa~~L-~~~G~ 81 (95)
T cd01534 63 DDDGV-RADMTASWL-AQMGW 81 (95)
T ss_pred CCCCC-hHHHHHHHH-HHcCC
Confidence 99998 776544443 44565
No 97
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=85.49 E-value=2 Score=40.14 Aligned_cols=95 Identities=14% Similarity=0.095 Sum_probs=47.1
Q ss_pred CHhhHHHHHHcCCcEEEEcCCCcccCcchhhh---hHHhhhcCCcEEEEEecCCCC-----CCCHHHHHHHHHHHhcCCC
Q 002281 276 TEEGLKWLMEKGYKTIVDIRAERVKDNFYEAA---IDDAILSGKVELIKIPVEVRT-----APTMEQVEKFASLVSNSSK 347 (943)
Q Consensus 276 T~eDLa~Lk~lGIKTVIDLRse~~ee~~~~a~---e~e~~e~~GI~yIhIPV~d~~-----~Ps~E~v~aFlelL~ds~~ 347 (943)
+++++..+.+.+=-.|||.|+.. +-...... +...-...| -+++|..... .+..+.+.+++.-+.-..+
T Consensus 2 s~~~l~~~l~~~~~~iiDvR~~~-e~~~~~~~~~~~~~~ghIpg--A~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (118)
T cd01449 2 TAEEVLANLDSGDVQLVDARSPE-RFRGEVPEPRPGLRSGHIPG--AVNIPWTSLLDEDGTFKSPEELRALFAALGITPD 78 (118)
T ss_pred CHHHHHHhcCCCCcEEEeCCCHH-HcCCcCCCCCCCCcCCcCCC--CcccChHHhcCCCCCcCCHHHHHHHHHHcCCCCC
Confidence 45566655444324799999975 11110000 000001122 2455543211 1334555555443322357
Q ss_pred CcEEEeCccCCchHHHHHHHHHHhcCCC
Q 002281 348 KPLYLHSKEGVWRTYAMVSRWRQYMARC 375 (943)
Q Consensus 348 ~PVLVHC~AGKDRTGALvaLlr~~lGvs 375 (943)
.||+++|..|. |+..++..+ ..+|.+
T Consensus 79 ~~iv~yc~~g~-~s~~~~~~l-~~~G~~ 104 (118)
T cd01449 79 KPVIVYCGSGV-TACVLLLAL-ELLGYK 104 (118)
T ss_pred CCEEEECCcHH-HHHHHHHHH-HHcCCC
Confidence 79999999986 877655444 345654
No 98
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=84.42 E-value=1.9 Score=39.26 Aligned_cols=74 Identities=18% Similarity=0.234 Sum_probs=42.7
Q ss_pred CCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEe
Q 002281 274 QVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLH 353 (943)
Q Consensus 274 qpT~eDLa~Lk~lGIKTVIDLRse~~ee~~~~a~e~e~~e~~GI~yIhIPV~d~~~Ps~E~v~aFlelL~ds~~~PVLVH 353 (943)
.++++++..+.+.+ -.|||+|+.+ + +. .-...| -+++|..... .....+ ..+.||+++
T Consensus 3 ~i~~~el~~~~~~~-~~liDvR~~~-e---~~-----~~hi~g--a~~ip~~~~~--------~~~~~~--~~~~~iv~~ 60 (99)
T cd01527 3 TISPNDACELLAQG-AVLVDIREPD-E---YL-----RERIPG--ARLVPLSQLE--------SEGLPL--VGANAIIFH 60 (99)
T ss_pred ccCHHHHHHHHHCC-CEEEECCCHH-H---HH-----hCcCCC--CEECChhHhc--------ccccCC--CCCCcEEEE
Confidence 45778887766667 6899999865 1 11 001122 2455543211 100112 346799999
Q ss_pred CccCCchHHHHHHHHHH
Q 002281 354 SKEGVWRTYAMVSRWRQ 370 (943)
Q Consensus 354 C~AGKDRTGALvaLlr~ 370 (943)
|..|. |+..++..++.
T Consensus 61 c~~g~-~s~~~~~~L~~ 76 (99)
T cd01527 61 CRSGM-RTQQNAERLAA 76 (99)
T ss_pred eCCCc-hHHHHHHHHHH
Confidence 99998 77765555543
No 99
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=84.02 E-value=4.3 Score=36.82 Aligned_cols=80 Identities=18% Similarity=0.307 Sum_probs=46.8
Q ss_pred CHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCC----CCCCCHHHHHHHHHHHhc--CCCCc
Q 002281 276 TEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEV----RTAPTMEQVEKFASLVSN--SSKKP 349 (943)
Q Consensus 276 T~eDLa~Lk~lGIKTVIDLRse~~ee~~~~a~e~e~~e~~GI~yIhIPV~d----~~~Ps~E~v~aFlelL~d--s~~~P 349 (943)
|++++..+.+.+=-.|||.|+.. + |. .-...|- +|+|... ......+.+..+...... ..+.+
T Consensus 1 s~~el~~~l~~~~~~liD~R~~~-~---~~-----~~hI~ga--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (113)
T PF00581_consen 1 SPEELKEMLENESVLLIDVRSPE-E---YE-----RGHIPGA--VNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKD 69 (113)
T ss_dssp -HHHHHHHHTTTTEEEEEESSHH-H---HH-----HSBETTE--EEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSE
T ss_pred CHHHHHhhhhCCCeEEEEeCCHH-H---HH-----cCCCCCC--cccccccccccccccccccccccccccccccccccc
Confidence 46677666655778999999875 1 11 1122333 7788732 223334455444443322 45668
Q ss_pred EEEeCccCCchHHHHHHH
Q 002281 350 LYLHSKEGVWRTYAMVSR 367 (943)
Q Consensus 350 VLVHC~AGKDRTGALvaL 367 (943)
|+|+|..|. |++.++++
T Consensus 70 iv~yc~~~~-~~~~~~~~ 86 (113)
T PF00581_consen 70 IVFYCSSGW-RSGSAAAA 86 (113)
T ss_dssp EEEEESSSC-HHHHHHHH
T ss_pred ceeeeeccc-ccchhHHH
Confidence 999998888 77755444
No 100
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=83.72 E-value=6.6 Score=37.47 Aligned_cols=86 Identities=16% Similarity=0.179 Sum_probs=45.0
Q ss_pred CCHhhHHHHHHcC-CcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCC--CCCHHHHHHHHHHHhcCCCCcEE
Q 002281 275 VTEEGLKWLMEKG-YKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRT--APTMEQVEKFASLVSNSSKKPLY 351 (943)
Q Consensus 275 pT~eDLa~Lk~lG-IKTVIDLRse~~ee~~~~a~e~e~~e~~GI~yIhIPV~d~~--~Ps~E~v~aFlelL~ds~~~PVL 351 (943)
++++++..+.+.+ =-.|||.|+.. + +. . .-...| -+++|..... .++......+...+ ..+.|++
T Consensus 1 is~~el~~~l~~~~~~~vIDvR~~~-e---~~---~-~ghIpg--A~~ip~~~~~~~~~~~~~~~~l~~~~--~~~~~iv 68 (117)
T cd01522 1 LTPAEAWALLQADPQAVLVDVRTEA-E---WK---F-VGGVPD--AVHVAWQVYPDMEINPNFLAELEEKV--GKDRPVL 68 (117)
T ss_pred CCHHHHHHHHHhCCCeEEEECCCHH-H---Hh---c-ccCCCC--ceecchhhccccccCHHHHHHHHhhC--CCCCeEE
Confidence 3566666665543 35699999875 1 10 0 011122 3556654221 11222222333333 3567999
Q ss_pred EeCccCCchHHHHHHHHHHhcCC
Q 002281 352 LHSKEGVWRTYAMVSRWRQYMAR 374 (943)
Q Consensus 352 VHC~AGKDRTGALvaLlr~~lGv 374 (943)
++|..|. |+...+..++. +|.
T Consensus 69 v~C~~G~-rs~~aa~~L~~-~G~ 89 (117)
T cd01522 69 LLCRSGN-RSIAAAEAAAQ-AGF 89 (117)
T ss_pred EEcCCCc-cHHHHHHHHHH-CCC
Confidence 9999997 88866555543 454
No 101
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=83.63 E-value=3 Score=47.11 Aligned_cols=83 Identities=14% Similarity=0.198 Sum_probs=47.5
Q ss_pred EcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHH----HHhcCC
Q 002281 271 RGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFAS----LVSNSS 346 (943)
Q Consensus 271 RSGqpT~eDLa~Lk~lGIKTVIDLRse~~ee~~~~a~e~e~~e~~GI~yIhIPV~d~~~Ps~E~v~aFle----lL~ds~ 346 (943)
++..++++++..+.+.+=-+|||.|... | |. .-...| -+++|+.. +..|.. .+....
T Consensus 110 ~~~~is~~el~~~l~~~~~vlIDVR~~~-E---~~-----~GhI~G--Ai~ip~~~--------~~~~~~~l~~~~~~~k 170 (314)
T PRK00142 110 VGTYLKPKEVNELLDDPDVVFIDMRNDY-E---YE-----IGHFEN--AIEPDIET--------FREFPPWVEENLDPLK 170 (314)
T ss_pred CCcccCHHHHHHHhcCCCeEEEECCCHH-H---Hh-----cCcCCC--CEeCCHHH--------hhhhHHHHHHhcCCCC
Confidence 3446888888776554435799999864 1 10 011122 24555542 222222 222235
Q ss_pred CCcEEEeCccCCchHHHHHHHHHHhcCC
Q 002281 347 KKPLYLHSKEGVWRTYAMVSRWRQYMAR 374 (943)
Q Consensus 347 ~~PVLVHC~AGKDRTGALvaLlr~~lGv 374 (943)
++||++||++|. |....+.+++. .|.
T Consensus 171 dk~IvvyC~~G~-Rs~~aa~~L~~-~Gf 196 (314)
T PRK00142 171 DKKVVMYCTGGI-RCEKASAWMKH-EGF 196 (314)
T ss_pred cCeEEEECCCCc-HHHHHHHHHHH-cCC
Confidence 689999999998 98866655543 343
No 102
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=81.38 E-value=5.2 Score=35.97 Aligned_cols=75 Identities=17% Similarity=0.239 Sum_probs=41.8
Q ss_pred CHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCc
Q 002281 276 TEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSK 355 (943)
Q Consensus 276 T~eDLa~Lk~lGIKTVIDLRse~~ee~~~~a~e~e~~e~~GI~yIhIPV~d~~~Ps~E~v~aFlelL~ds~~~PVLVHC~ 355 (943)
+++++..+.+.++ .|||+|+.. + |. .-...| .+++|.. .+...+..+ ..+.|++++|.
T Consensus 2 ~~~e~~~~~~~~~-~iiD~R~~~-~---~~-----~~hipg--A~~ip~~--------~~~~~~~~~--~~~~~vvl~c~ 59 (90)
T cd01524 2 QWHELDNYRADGV-TLIDVRTPQ-E---FE-----KGHIKG--AINIPLD--------ELRDRLNEL--PKDKEIIVYCA 59 (90)
T ss_pred CHHHHHHHhcCCC-EEEECCCHH-H---Hh-----cCCCCC--CEeCCHH--------HHHHHHHhc--CCCCcEEEEcC
Confidence 5677777776565 599999875 1 11 001112 2444542 333333333 34679999999
Q ss_pred cCCchHHHHHHHHHHhcCC
Q 002281 356 EGVWRTYAMVSRWRQYMAR 374 (943)
Q Consensus 356 AGKDRTGALvaLlr~~lGv 374 (943)
.|. |+...+..+ ...|.
T Consensus 60 ~g~-~a~~~a~~L-~~~G~ 76 (90)
T cd01524 60 VGL-RGYIAARIL-TQNGF 76 (90)
T ss_pred CCh-hHHHHHHHH-HHCCC
Confidence 986 665554444 33454
No 103
>PRK14071 6-phosphofructokinase; Provisional
Probab=81.11 E-value=1.4 Score=50.76 Aligned_cols=54 Identities=20% Similarity=0.297 Sum_probs=39.4
Q ss_pred CccEEEEEcCCchHHHHhhhccCCCCcEEEEeC----------CCCcccCCCCchhHHHHHHHHHc
Q 002281 755 RVDFVACLGGDGVILHASNLFRGAVPPVISFNL----------GSLGFLTSHPFEDYRQDLRQVIY 810 (943)
Q Consensus 755 ~~DlVIvLGGDGTiL~Aar~~~~~~~PVLGIN~----------GsLGFLt~~~~ed~~~~L~~ll~ 810 (943)
++|.+|++|||||+-.+.++.....+||+||-- -++||-|..+. ..++++++..
T Consensus 107 ~Id~Li~IGGdgS~~~a~~L~~~~~i~vIgiPkTIDNDl~~td~t~Gf~TA~~~--~~~~id~i~~ 170 (360)
T PRK14071 107 GLDALIGIGGDGSLAILRRLAQQGGINLVGIPKTIDNDVGATEVSIGFDTAVNI--ATEALDRLHF 170 (360)
T ss_pred CCCEEEEECChhHHHHHHHHHHhcCCcEEEecccccCCCcCcccCcChhHHHHH--HHHHHHHHHh
Confidence 799999999999986665554434789999842 38999887654 4456666543
No 104
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=80.38 E-value=1.3 Score=50.19 Aligned_cols=54 Identities=24% Similarity=0.328 Sum_probs=38.9
Q ss_pred cCccEEEEEcCCchHHHHhhhccCCCCcEEEEeC-------C---CCcccCCCCchhHHHHHHHHHc
Q 002281 754 ERVDFVACLGGDGVILHASNLFRGAVPPVISFNL-------G---SLGFLTSHPFEDYRQDLRQVIY 810 (943)
Q Consensus 754 ~~~DlVIvLGGDGTiL~Aar~~~~~~~PVLGIN~-------G---sLGFLt~~~~ed~~~~L~~ll~ 810 (943)
-++|.+|++|||||+-.|..+. ...+||+||-. | ++||-|..+. +.+.++.+..
T Consensus 93 ~~Id~LivIGGdgS~~~a~~L~-~~gi~vigiPkTIDNDl~gtd~tiGfdTA~~~--~~~~i~~i~~ 156 (324)
T TIGR02483 93 LGLDALIAIGGDGTLGIARRLA-DKGLPVVGVPKTIDNDLEATDYTFGFDTAVEI--ATEALDRLHT 156 (324)
T ss_pred cCCCEEEEECCchHHHHHHHHH-hcCCCEEeeccccCCCCcCCccCcCHHHHHHH--HHHHHHHHHH
Confidence 4789999999999997665544 45699999943 3 7899887654 4455555543
No 105
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=79.93 E-value=7.2 Score=37.74 Aligned_cols=28 Identities=11% Similarity=0.168 Sum_probs=19.4
Q ss_pred CCCCcEEEeCc-cCCchHHHHHHHHHHhcCC
Q 002281 345 SSKKPLYLHSK-EGVWRTYAMVSRWRQYMAR 374 (943)
Q Consensus 345 s~~~PVLVHC~-AGKDRTGALvaLlr~~lGv 374 (943)
..+.+++++|. +|. |+..++.++ ..+|.
T Consensus 84 ~~~~~vvvyC~~~G~-rs~~a~~~L-~~~G~ 112 (128)
T cd01520 84 ERDPKLLIYCARGGM-RSQSLAWLL-ESLGI 112 (128)
T ss_pred CCCCeEEEEeCCCCc-cHHHHHHHH-HHcCC
Confidence 35679999997 465 888666444 44575
No 106
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=79.85 E-value=4.1 Score=38.92 Aligned_cols=86 Identities=17% Similarity=0.351 Sum_probs=44.9
Q ss_pred CCCHhhHHHHHHcCC-cEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHH--HHHHHhcCCCCcE
Q 002281 274 QVTEEGLKWLMEKGY-KTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEK--FASLVSNSSKKPL 350 (943)
Q Consensus 274 qpT~eDLa~Lk~lGI-KTVIDLRse~~ee~~~~a~e~e~~e~~GI~yIhIPV~d~~~Ps~E~v~a--FlelL~ds~~~PV 350 (943)
.++++++..+.+.+- -.|||+|+.. + +. .....| -+++|....... ...+.. +.... ...++|+
T Consensus 9 ~is~~el~~~~~~~~~~~ivDvR~~~-e---~~-----~~hIpg--ai~ip~~~~~~~-~~~~~~~~~~~~~-~~~~~~i 75 (122)
T cd01526 9 RVSVKDYKNILQAGKKHVLLDVRPKV-H---FE-----ICRLPE--AINIPLSELLSK-AAELKSLQELPLD-NDKDSPI 75 (122)
T ss_pred ccCHHHHHHHHhCCCCeEEEEcCCHH-H---hh-----cccCCC--CeEccHHHHhhh-hhhhhhhhhcccc-cCCCCcE
Confidence 568888877766632 3599999875 1 10 011122 345665321110 000100 11111 1457899
Q ss_pred EEeCccCCchHHHHHHHHHHhcCC
Q 002281 351 YLHSKEGVWRTYAMVSRWRQYMAR 374 (943)
Q Consensus 351 LVHC~AGKDRTGALvaLlr~~lGv 374 (943)
+++|.+|. |+...+..++. .|.
T Consensus 76 vv~C~~G~-rs~~aa~~L~~-~G~ 97 (122)
T cd01526 76 YVVCRRGN-DSQTAVRKLKE-LGL 97 (122)
T ss_pred EEECCCCC-cHHHHHHHHHH-cCC
Confidence 99999997 87754444433 455
No 107
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=79.84 E-value=4.8 Score=40.56 Aligned_cols=81 Identities=20% Similarity=0.242 Sum_probs=49.2
Q ss_pred CHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCC-cEEEEEecCCCCCCCHHHHHHHHHHHh---cCCCCcEE
Q 002281 276 TEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGK-VELIKIPVEVRTAPTMEQVEKFASLVS---NSSKKPLY 351 (943)
Q Consensus 276 T~eDLa~Lk~lGIKTVIDLRse~~ee~~~~a~e~e~~e~~G-I~yIhIPV~d~~~Ps~E~v~aFlelL~---ds~~~PVL 351 (943)
+-++...|.+.|=+..||.|.++ |. ...+ -.-|+||+.....--...=..|.+.+. -..+..|+
T Consensus 26 ~~~qvk~L~~~~~~~llDVRepe-Ef-----------k~gh~~~siNiPy~~~~~~~~l~~~eF~kqvg~~kp~~d~eiI 93 (136)
T KOG1530|consen 26 SVEQVKNLLQHPDVVLLDVREPE-EF-----------KQGHIPASINIPYMSRPGAGALKNPEFLKQVGSSKPPHDKEII 93 (136)
T ss_pred EHHHHHHHhcCCCEEEEeecCHH-Hh-----------hccCCcceEeccccccccccccCCHHHHHHhcccCCCCCCcEE
Confidence 55667778888889999999986 21 1122 357888885322111111123444432 23456899
Q ss_pred EeCccCCchHHHHHHHHH
Q 002281 352 LHSKEGVWRTYAMVSRWR 369 (943)
Q Consensus 352 VHC~AGKDRTGALvaLlr 369 (943)
|||++|+ |.....-++.
T Consensus 94 f~C~SG~-Rs~~A~~~l~ 110 (136)
T KOG1530|consen 94 FGCASGV-RSLKATKILV 110 (136)
T ss_pred EEeccCc-chhHHHHHHH
Confidence 9999999 9885544443
No 108
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=79.58 E-value=2.5 Score=54.14 Aligned_cols=31 Identities=29% Similarity=0.349 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhcC---CCCcEEEeCccCCchHHH
Q 002281 333 EQVEKFASLVSNS---SKKPLYLHSKEGVWRTYA 363 (943)
Q Consensus 333 E~v~aFlelL~ds---~~~PVLVHC~AGKDRTGA 363 (943)
..+.+|++-+..- ..+|++|||.+|.+|||+
T Consensus 713 t~lL~f~rrvk~~~p~~aGPiVVHCSAGvGRTG~ 746 (1087)
T KOG4228|consen 713 TGLLKFRRRVKTFNPPDAGPIVVHCSAGVGRTGC 746 (1087)
T ss_pred hHHHHHHHHhccCCCcCCCCEEEECCCCCCCcce
Confidence 4566666665432 358999999999999995
No 109
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=79.21 E-value=8.3 Score=37.24 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=19.1
Q ss_pred CCCCcEEEeCc-cCCchHHHHHHHHHH
Q 002281 345 SSKKPLYLHSK-EGVWRTYAMVSRWRQ 370 (943)
Q Consensus 345 s~~~PVLVHC~-AGKDRTGALvaLlr~ 370 (943)
..+.+|++||. +|. |+..++..+..
T Consensus 66 ~~~~~vv~yC~~sg~-rs~~aa~~L~~ 91 (121)
T cd01530 66 KKRRVLIFHCEFSSK-RGPRMARHLRN 91 (121)
T ss_pred CCCCEEEEECCCccc-cHHHHHHHHHH
Confidence 35789999997 787 98877666654
No 110
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=78.10 E-value=1.8 Score=48.72 Aligned_cols=54 Identities=24% Similarity=0.389 Sum_probs=39.5
Q ss_pred cCccEEEEEcCCchHHHHhhhccCCCCcEEEEeC-------C---CCcccCCCCchhHHHHHHHHH
Q 002281 754 ERVDFVACLGGDGVILHASNLFRGAVPPVISFNL-------G---SLGFLTSHPFEDYRQDLRQVI 809 (943)
Q Consensus 754 ~~~DlVIvLGGDGTiL~Aar~~~~~~~PVLGIN~-------G---sLGFLt~~~~ed~~~~L~~ll 809 (943)
.+.|.+|++|||||+-.|..+.....+||+||-. | ++||-|..+ .+.++++++.
T Consensus 90 ~~Id~Li~IGGdgs~~~a~~L~e~~~i~vigiPkTIDNDl~~td~s~GfdTA~~--~~~~~i~~i~ 153 (301)
T TIGR02482 90 LGIEGLVVIGGDGSYTGAQKLYEEGGIPVIGLPGTIDNDIPGTDYTIGFDTALN--TIIDAVDKIR 153 (301)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHhhCCCEEeecccccCCCcCcccCcChhHHHH--HHHHHHHHHH
Confidence 3789999999999998777765546799999953 3 789988653 3344555553
No 111
>KOG4471 consensus Phosphatidylinositol 3-phosphate 3-phosphatase myotubularin MTM1 [Lipid transport and metabolism; Intracellular trafficking, secretion, and vesicular transport]
Probab=77.65 E-value=2.9 Score=50.60 Aligned_cols=25 Identities=28% Similarity=0.338 Sum_probs=19.8
Q ss_pred cCCCCcEEEeCccCCchHHHHHHHH
Q 002281 344 NSSKKPLYLHSKEGVWRTYAMVSRW 368 (943)
Q Consensus 344 ds~~~PVLVHC~AGKDRTGALvaLl 368 (943)
+....||||||.-|.|||.=++++.
T Consensus 371 e~~~~sVlVHCSDGWDRT~QlvsLA 395 (717)
T KOG4471|consen 371 ESESRSVLVHCSDGWDRTAQLVSLA 395 (717)
T ss_pred hcCCceEEEEcCCCccchHHHHHHH
Confidence 3567899999999999999444443
No 112
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=76.70 E-value=5.7 Score=37.87 Aligned_cols=66 Identities=15% Similarity=0.215 Sum_probs=35.8
Q ss_pred CcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCccCCchHHHHHHH
Q 002281 288 YKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSR 367 (943)
Q Consensus 288 IKTVIDLRse~~ee~~~~a~e~e~~e~~GI~yIhIPV~d~~~Ps~E~v~aFlelL~ds~~~PVLVHC~AGKDRTGALvaL 367 (943)
=++|||.|+++ + |. .-...| -+++|.. ++...++.+....+.|++++|.+|. |+..++..
T Consensus 20 ~~~lIDvR~~~-e---f~-----~ghIpG--AiniP~~--------~l~~~l~~l~~~~~~~IVlyC~~G~-rS~~aa~~ 79 (104)
T PRK10287 20 AEHWIDVRVPE-Q---YQ-----QEHVQG--AINIPLK--------EVKERIATAVPDKNDTVKLYCNAGR-QSGQAKEI 79 (104)
T ss_pred CCEEEECCCHH-H---Hh-----cCCCCc--cEECCHH--------HHHHHHHhcCCCCCCeEEEEeCCCh-HHHHHHHH
Confidence 47899999975 1 11 001112 2455543 3333333331234578999999996 87765544
Q ss_pred HHHhcCC
Q 002281 368 WRQYMAR 374 (943)
Q Consensus 368 lr~~lGv 374 (943)
+.. +|.
T Consensus 80 L~~-~G~ 85 (104)
T PRK10287 80 LSE-MGY 85 (104)
T ss_pred HHH-cCC
Confidence 433 453
No 113
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=76.31 E-value=2.3 Score=49.72 Aligned_cols=54 Identities=28% Similarity=0.334 Sum_probs=38.8
Q ss_pred cCccEEEEEcCCchHHHHhhhcc-----CCCCcEEEEeC----------CCCcccCCCCchhHHHHHHHHH
Q 002281 754 ERVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL----------GSLGFLTSHPFEDYRQDLRQVI 809 (943)
Q Consensus 754 ~~~DlVIvLGGDGTiL~Aar~~~-----~~~~PVLGIN~----------GsLGFLt~~~~ed~~~~L~~ll 809 (943)
.++|.+|++|||||+-.|.++.. +..+||+||-- =++||-|..+ .+.++++++.
T Consensus 111 ~~Id~Li~IGGdgS~~~a~~L~~~~~~~g~~i~vvgIPkTIDNDl~~td~t~Gf~TA~~--~~~~ai~~l~ 179 (403)
T PRK06555 111 DGVDILHTIGGDDTNTTAADLAAYLAENGYDLTVVGLPKTIDNDVVPIRQSLGAWTAAE--QGARFFDNVI 179 (403)
T ss_pred cCCCEEEEECChhHHHHHHHHHHHHHHhCCCceEEEeeeeeeCCCCCccCCcCHHHHHH--HHHHHHHHHH
Confidence 37899999999999988877643 34789999842 2788887654 3344555554
No 114
>PF13348 Y_phosphatase3C: Tyrosine phosphatase family C-terminal region; PDB: 1YWF_A 2OZ5_B.
Probab=75.96 E-value=1.3 Score=38.53 Aligned_cols=26 Identities=23% Similarity=0.216 Sum_probs=22.8
Q ss_pred hhhhhchhhhhhhhhccchhhhHhhh
Q 002281 398 RKLKASAGKFLLEEKYETVKENQDEI 423 (943)
Q Consensus 398 r~~~m~a~~~~l~~~~g~~e~~~~~~ 423 (943)
+++.|.+++..|+++|||+++|+++.
T Consensus 27 ~~e~l~~~l~~i~~~yGs~e~Yl~~~ 52 (68)
T PF13348_consen 27 RPEYLEAALDAIDERYGSVENYLREE 52 (68)
T ss_dssp -HHHHHHHHHHHHHHHSSHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHc
Confidence 67799999999999999999999654
No 115
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=75.52 E-value=3.6 Score=47.19 Aligned_cols=31 Identities=23% Similarity=0.265 Sum_probs=23.0
Q ss_pred HHHHhcCCCCcEEEeCccCCchHHHHHHHHHH
Q 002281 339 ASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQ 370 (943)
Q Consensus 339 lelL~ds~~~PVLVHC~AGKDRTGALvaLlr~ 370 (943)
++.+ ...+.+|||||..|.|||..+.+|...
T Consensus 224 ~~~l-~~~~~~Vlvh~~dGwDrt~q~~sL~ql 254 (353)
T PF06602_consen 224 ADLL-HDEGSSVLVHCSDGWDRTSQLSSLAQL 254 (353)
T ss_dssp HHHH-HTT--EEEEECTTSSSHHHHHHHHHHH
T ss_pred HHHh-hccCceEEEEcCCCCcccHHHHHHHHH
Confidence 3344 346779999999999999988887765
No 116
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=75.39 E-value=8.7 Score=35.72 Aligned_cols=78 Identities=12% Similarity=0.133 Sum_probs=42.7
Q ss_pred CCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeC
Q 002281 275 VTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHS 354 (943)
Q Consensus 275 pT~eDLa~Lk~lGIKTVIDLRse~~ee~~~~a~e~e~~e~~GI~yIhIPV~d~~~Ps~E~v~aFlelL~ds~~~PVLVHC 354 (943)
++++++..+.+.+=-.|||+|+.. + +. .-...| -+++|. ..+..++..+ ..+.|++|+|
T Consensus 7 is~~el~~~l~~~~~~ivDvR~~~-e---~~-----~ghi~g--A~~ip~--------~~l~~~~~~~--~~~~~ivv~c 65 (108)
T PRK00162 7 INVEQAHQKLQEGGAVLVDIRDPQ-S---FA-----MGHAPG--AFHLTN--------DSLGAFMRQA--DFDTPVMVMC 65 (108)
T ss_pred cCHHHHHHHHHcCCCEEEEcCCHH-H---Hh-----cCCCCC--CeECCH--------HHHHHHHHhc--CCCCCEEEEe
Confidence 567777665544325799999875 1 10 001112 233332 3444455444 3567999999
Q ss_pred ccCCchHHHHHHHHHHhcCCC
Q 002281 355 KEGVWRTYAMVSRWRQYMARC 375 (943)
Q Consensus 355 ~AGKDRTGALvaLlr~~lGvs 375 (943)
..|. |+..++..+ ...|.+
T Consensus 66 ~~g~-~s~~a~~~L-~~~G~~ 84 (108)
T PRK00162 66 YHGN-SSQGAAQYL-LQQGFD 84 (108)
T ss_pred CCCC-CHHHHHHHH-HHCCch
Confidence 9998 765444333 334543
No 117
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=74.98 E-value=8.8 Score=36.32 Aligned_cols=71 Identities=14% Similarity=0.173 Sum_probs=39.0
Q ss_pred HHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCccCCchHH
Q 002281 283 LMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEGVWRTY 362 (943)
Q Consensus 283 Lk~lGIKTVIDLRse~~ee~~~~a~e~e~~e~~GI~yIhIPV~d~~~Ps~E~v~aFlelL~ds~~~PVLVHC~AGKDRTG 362 (943)
|.=.--+.+||.|+.+ + +. .-...| -+++|.. .+......+....+.|++++|..|. |+.
T Consensus 13 ~~~~~~~~lIDvR~~~-e---f~-----~ghIpg--Ainip~~--------~l~~~l~~~~~~~~~~vvlyC~~G~-rS~ 72 (101)
T TIGR02981 13 LPLFAAEHWIDVRIPE-Q---YQ-----QEHIQG--AINIPLK--------EIKEHIATAVPDKNDTVKLYCNAGR-QSG 72 (101)
T ss_pred hhhccCCEEEECCCHH-H---Hh-----cCCCCC--CEECCHH--------HHHHHHHHhCCCCCCeEEEEeCCCH-HHH
Confidence 3334567899999875 1 10 011122 2445542 3333333222234678999999998 888
Q ss_pred HHHHHHHHhcCC
Q 002281 363 AMVSRWRQYMAR 374 (943)
Q Consensus 363 ALvaLlr~~lGv 374 (943)
..+..+.. +|.
T Consensus 73 ~aa~~L~~-~G~ 83 (101)
T TIGR02981 73 MAKDILLD-MGY 83 (101)
T ss_pred HHHHHHHH-cCC
Confidence 66655544 454
No 118
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=74.87 E-value=2.8 Score=47.51 Aligned_cols=52 Identities=23% Similarity=0.389 Sum_probs=37.1
Q ss_pred cCccEEEEEcCCchHHHHhhhccCCCCcEEEEeC-------C---CCcccCCCCchhHHHHHHHH
Q 002281 754 ERVDFVACLGGDGVILHASNLFRGAVPPVISFNL-------G---SLGFLTSHPFEDYRQDLRQV 808 (943)
Q Consensus 754 ~~~DlVIvLGGDGTiL~Aar~~~~~~~PVLGIN~-------G---sLGFLt~~~~ed~~~~L~~l 808 (943)
.++|.+|++|||||+-.|.++. ...+||+||-- | ++||-|..+. +.+.++.+
T Consensus 91 ~~Id~Li~IGGdgs~~~a~~L~-e~~i~vigiPkTIDNDi~gtd~t~Gf~TA~~~--~~~~i~~i 152 (317)
T cd00763 91 HGIDALVVIGGDGSYMGAMRLT-EHGFPCVGLPGTIDNDIPGTDYTIGFDTALNT--VVEAIDRI 152 (317)
T ss_pred cCCCEEEEECCchHHHHHHHHH-HcCCCEEEecccccCCCCCCccCCCHHHHHHH--HHHHHHHH
Confidence 4789999999999987776554 34799999843 3 7899887543 23344444
No 119
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=74.56 E-value=5.2 Score=45.83 Aligned_cols=88 Identities=16% Similarity=0.155 Sum_probs=51.6
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCcccc-ccCccEEEEEcCCchH
Q 002281 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 768 (943)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~~l~~~L~~~~g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~DlVIvLGGDGTi 768 (943)
.++++||....-.......++.+.|.+ .++++.+-..+.. .|....+... .... ..++|+||.||| |++
T Consensus 23 ~~r~livt~~~~~~~g~~~~v~~~L~~-~gi~~~~~~~v~~----~p~~~~v~~~----~~~~~~~~~D~IIaiGG-GS~ 92 (375)
T cd08194 23 GKRPLIVTDKVMVKLGLVDKLTDSLKK-EGIESAIFDDVVS----EPTDESVEEG----VKLAKEGGCDVIIALGG-GSP 92 (375)
T ss_pred CCeEEEEcCcchhhcchHHHHHHHHHH-CCCeEEEECCCCC----CcCHHHHHHH----HHHHHhcCCCEEEEeCC-chH
Confidence 478999986543322356778888864 4666654322211 1111101000 0011 247899999999 999
Q ss_pred HHHhhhcc-------------------CCCCcEEEEeC
Q 002281 769 LHASNLFR-------------------GAVPPVISFNL 787 (943)
Q Consensus 769 L~Aar~~~-------------------~~~~PVLGIN~ 787 (943)
+-+++... ...+|++.|.+
T Consensus 93 ~D~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPT 130 (375)
T cd08194 93 IDTAKAIAVLATNGGSIRDYKGPRIVDKPGLPLIAIPT 130 (375)
T ss_pred HHHHHHHHHHHhCCCCHHHHhCcccccCCCCCEEEECC
Confidence 99988653 23579999875
No 120
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=74.18 E-value=2.8 Score=49.85 Aligned_cols=53 Identities=23% Similarity=0.353 Sum_probs=37.9
Q ss_pred cCccEEEEEcCCchHHHHhhhcc-----CCCCcEEEEeC----------CCCcccCCCCchhHHHHHHHH
Q 002281 754 ERVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL----------GSLGFLTSHPFEDYRQDLRQV 808 (943)
Q Consensus 754 ~~~DlVIvLGGDGTiL~Aar~~~-----~~~~PVLGIN~----------GsLGFLt~~~~ed~~~~L~~l 808 (943)
-++|.+|+||||||+-.|..+.. +..+||+||-- =++||-|.++. ..++++.+
T Consensus 175 ~~I~~L~vIGGdgT~~~A~~L~ee~~~~g~~I~VIGIPKTIDNDI~~td~S~GFdTAv~~--~~~aI~~~ 242 (459)
T PTZ00286 175 HGINILFTLGGDGTHRGALAIYKELRRRKLNISVVGIPKTIDNDIPIIDESFGFQTAVEE--AQNAIRAA 242 (459)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCCCcccCcCchHHHHH--HHHHHHHH
Confidence 47999999999999988776543 34689999842 38899887542 33444443
No 121
>PRK14072 6-phosphofructokinase; Provisional
Probab=74.07 E-value=2.7 Score=49.30 Aligned_cols=53 Identities=13% Similarity=0.147 Sum_probs=37.4
Q ss_pred cCccEEEEEcCCchHHHHhhhcc-----CCCCcEEEEeC----------CCCcccCCCCchhHHHHHHHH
Q 002281 754 ERVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL----------GSLGFLTSHPFEDYRQDLRQV 808 (943)
Q Consensus 754 ~~~DlVIvLGGDGTiL~Aar~~~-----~~~~PVLGIN~----------GsLGFLt~~~~ed~~~~L~~l 808 (943)
-++|.+|+||||||+-.|.++.. +..+||+||-- -++||-|..+ .+.++++++
T Consensus 102 ~~Id~LivIGGdgS~~~a~~L~e~~~~~g~~i~vIgIPkTIDNDl~gtD~t~GF~TA~~--~i~~ai~~l 169 (416)
T PRK14072 102 HDIGYFFYNGGNDSMDTALKVSQLAKKMGYPIRCIGIPKTIDNDLPGTDHCPGFGSAAK--YIATSVLEA 169 (416)
T ss_pred cCCCEEEEECChHHHHHHHHHHHHHHHhCCCceEEEeeecccCCCCCCCCCCChHHHHH--HHHHHHHHH
Confidence 47999999999999987776543 34589999842 3788887643 233445454
No 122
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=72.00 E-value=3.3 Score=47.58 Aligned_cols=44 Identities=27% Similarity=0.338 Sum_probs=35.6
Q ss_pred cCccEEEEEcCCchHHHHhhhccCCCCcEEEEeC----------CCCcccCCCC
Q 002281 754 ERVDFVACLGGDGVILHASNLFRGAVPPVISFNL----------GSLGFLTSHP 797 (943)
Q Consensus 754 ~~~DlVIvLGGDGTiL~Aar~~~~~~~PVLGIN~----------GsLGFLt~~~ 797 (943)
.+.|.+|++|||||.-.|..+......|++||-- =++||.|..+
T Consensus 93 ~gId~LvvIGGDgS~~gA~~Lae~~~i~vVGvPkTIDNDi~~td~tiGfdTA~~ 146 (347)
T COG0205 93 LGIDALVVIGGDGSYTGAALLAEEGGIPVVGVPKTIDNDISGTDFTIGFDTALE 146 (347)
T ss_pred cCCCEEEEECCCChHHHHHHHHHhcCCcEEecCCCccCCCcccccCccHHHHHH
Confidence 4799999999999998888776555589999842 2799998764
No 123
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=71.70 E-value=3.4 Score=48.91 Aligned_cols=44 Identities=30% Similarity=0.441 Sum_probs=33.8
Q ss_pred cCccEEEEEcCCchHHHHhhhcc-----CCCCcEEEEeC----------CCCcccCCCC
Q 002281 754 ERVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL----------GSLGFLTSHP 797 (943)
Q Consensus 754 ~~~DlVIvLGGDGTiL~Aar~~~-----~~~~PVLGIN~----------GsLGFLt~~~ 797 (943)
.++|.+|+||||||+-.|.++.. +..+||+||-- =++||-|.++
T Consensus 171 ~~I~~L~vIGGdgT~~gA~~l~ee~~~~g~~I~VIGIPKTIDNDi~~td~S~GFdTAv~ 229 (443)
T PRK06830 171 MNINILFVIGGDGTLRGASAIAEEIERRGLKISVIGIPKTIDNDINFIQKSFGFETAVE 229 (443)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCcCcccCCCHHHHHH
Confidence 47999999999999987766543 34589999943 3788888654
No 124
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=71.38 E-value=8.7 Score=44.37 Aligned_cols=85 Identities=13% Similarity=0.177 Sum_probs=46.9
Q ss_pred CCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcC-CcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEE
Q 002281 274 QVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSG-KVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYL 352 (943)
Q Consensus 274 qpT~eDLa~Lk~lGIKTVIDLRse~~ee~~~~a~e~e~~e~~-GI~yIhIPV~d~~~Ps~E~v~aFlelL~ds~~~PVLV 352 (943)
.++.+++..+.+.+=-.|||.|+++ | |. ..... +...+++|+...... . .+...+....+.|++|
T Consensus 272 ~~~~~el~~~l~~~~~~lIDVR~~~-E---~~-----~ghI~~~~gAinIPl~~l~~~-~----~~~~~l~~~~~~~Ivv 337 (370)
T PRK05600 272 RTDTTSLIDATLNGSATLLDVREPH-E---VL-----LKDLPEGGASLKLPLSAITDD-A----DILHALSPIDGDNVVV 337 (370)
T ss_pred ccCHHHHHHHHhcCCeEEEECCCHH-H---hh-----hccCCCCCccEeCcHHHhhcc-h----hhhhhccccCCCcEEE
Confidence 4677777766555433799999976 1 10 00111 124678886522110 0 1112221112339999
Q ss_pred eCccCCchHHHHHHHHHHhcCC
Q 002281 353 HSKEGVWRTYAMVSRWRQYMAR 374 (943)
Q Consensus 353 HC~AGKDRTGALvaLlr~~lGv 374 (943)
||.+|. |+..++..++. .|.
T Consensus 338 ~C~sG~-RS~~Aa~~L~~-~G~ 357 (370)
T PRK05600 338 YCASGI-RSADFIEKYSH-LGH 357 (370)
T ss_pred ECCCCh-hHHHHHHHHHH-cCC
Confidence 999998 98866655544 454
No 125
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=70.83 E-value=6 Score=45.35 Aligned_cols=87 Identities=17% Similarity=0.313 Sum_probs=50.5
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCcccc-ccCccEEEEEcCCchHH
Q 002281 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVIL 769 (943)
Q Consensus 691 k~VlIv~K~~~~~~~~a~~l~~~L~~~~g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~DlVIvLGGDGTiL 769 (943)
++++||....-.......++.+.|.+ .++++.+-.++.. .|....+... .... ..++|+||.||| |+++
T Consensus 29 ~~~lvv~~~~~~~~~~~~~v~~~L~~-~~~~~~~f~~v~~----~p~~~~v~~~----~~~~~~~~~D~IIavGG-GS~i 98 (377)
T cd08176 29 KKALIVTDKGLVKIGVVEKVTDVLDE-AGIDYVIYDGVKP----NPTITNVKDG----LAVFKKEGCDFIISIGG-GSPH 98 (377)
T ss_pred CeEEEECCchHhhcCcHHHHHHHHHH-cCCeEEEeCCCCC----CCCHHHHHHH----HHHHHhcCCCEEEEeCC-cHHH
Confidence 68999976543223456778888854 4666554332211 1111101000 0011 247899999999 9999
Q ss_pred HHhhhcc-------------------CCCCcEEEEeC
Q 002281 770 HASNLFR-------------------GAVPPVISFNL 787 (943)
Q Consensus 770 ~Aar~~~-------------------~~~~PVLGIN~ 787 (943)
-+++... ...+|++.|-+
T Consensus 99 D~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPT 135 (377)
T cd08176 99 DCAKAIGIVATNGGDIRDYEGVAKSKKPAVPIVAINT 135 (377)
T ss_pred HHHHHHHHHHhCCCCHHHHhCcCccCCCCCCEEEeCC
Confidence 9888642 23568888875
No 126
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=70.74 E-value=5.9 Score=45.30 Aligned_cols=88 Identities=23% Similarity=0.257 Sum_probs=50.7
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccc-cccCccEEEEEcCCchH
Q 002281 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVI 768 (943)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~~l~~~L~~~~g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~DlVIvLGGDGTi 768 (943)
.++++||....-.......++...|.+ .++++.+-..+. ..|....+... ... ...++|+||.||| |++
T Consensus 26 ~~~~livt~~~~~~~~~~~~v~~~L~~-~~~~~~~~~~v~----~~p~~~~v~~~----~~~~~~~~~D~IIaiGG-Gs~ 95 (376)
T cd08193 26 AKRVLVVTDPGILKAGLIDPLLASLEA-AGIEVTVFDDVE----ADPPEAVVEAA----VEAARAAGADGVIGFGG-GSS 95 (376)
T ss_pred CCeEEEEcCcchhhCccHHHHHHHHHH-cCCeEEEECCCC----CCcCHHHHHHH----HHHHHhcCCCEEEEeCC-chH
Confidence 478999976542223345677788854 466665432221 11111111100 001 1247899999999 999
Q ss_pred HHHhhhcc-------------------CCCCcEEEEeC
Q 002281 769 LHASNLFR-------------------GAVPPVISFNL 787 (943)
Q Consensus 769 L~Aar~~~-------------------~~~~PVLGIN~ 787 (943)
+-+++... ...+|++.|.+
T Consensus 96 iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPT 133 (376)
T cd08193 96 MDVAKLVAVLAGSDQPLADMYGVDLVAGPRLPLILVPT 133 (376)
T ss_pred HHHHHHHHHHHHCCCCHHHHhCCCccCCCCCCEEEeCC
Confidence 99998643 13568888875
No 127
>PLN02564 6-phosphofructokinase
Probab=70.69 E-value=3.7 Score=49.07 Aligned_cols=53 Identities=25% Similarity=0.366 Sum_probs=36.8
Q ss_pred cCccEEEEEcCCchHHHHhhhcc-----CCCCcEEEEeC----------CCCcccCCCCchhHHHHHHHH
Q 002281 754 ERVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL----------GSLGFLTSHPFEDYRQDLRQV 808 (943)
Q Consensus 754 ~~~DlVIvLGGDGTiL~Aar~~~-----~~~~PVLGIN~----------GsLGFLt~~~~ed~~~~L~~l 808 (943)
-++|.+|+||||||+-.|..+.. +..++|+||-- -++||-|.++ .+.++++++
T Consensus 175 ~~Id~LivIGGDGS~~gA~~L~e~~~~~g~~i~VIGIPKTIDNDI~~tD~T~GFdTAv~--~~~~aI~~i 242 (484)
T PLN02564 175 RGINQVYIIGGDGTQKGASVIYEEIRRRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVE--EAQRAINAA 242 (484)
T ss_pred hCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEEecccccCCCcCcccCCCHHHHHH--HHHHHHHHH
Confidence 37999999999999988777543 33456999843 2788887654 334455544
No 128
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=69.42 E-value=13 Score=38.58 Aligned_cols=75 Identities=9% Similarity=0.172 Sum_probs=44.2
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccccccCccEEEEEcCCc---h
Q 002281 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDG---V 767 (943)
Q Consensus 691 k~VlIv~K~~~~~~~~a~~l~~~L~~~~g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIvLGGDG---T 767 (943)
++||||-....... .+++||.+ .|.++.+-+... .+.++ .+.+|.||+.||-| .
T Consensus 2 ~~iliid~~dsf~~----~i~~~l~~-~g~~~~v~~~~~-----------------~~~~~-l~~~d~iIi~gGp~~~~~ 58 (190)
T PRK06895 2 TKLLIINNHDSFTF----NLVDLIRK-LGVPMQVVNVED-----------------LDLDE-VENFSHILISPGPDVPRA 58 (190)
T ss_pred cEEEEEeCCCchHH----HHHHHHHH-cCCcEEEEECCc-----------------cChhH-hccCCEEEECCCCCChHH
Confidence 57889888775433 36677754 465554422100 00112 23579999999998 2
Q ss_pred ---HHHHhhhccCCCCcEEEEeCCC
Q 002281 768 ---ILHASNLFRGAVPPVISFNLGS 789 (943)
Q Consensus 768 ---iL~Aar~~~~~~~PVLGIN~Gs 789 (943)
++...+.+ ...+|||||-+|.
T Consensus 59 ~~~~~~~i~~~-~~~~PiLGIClG~ 82 (190)
T PRK06895 59 YPQLFAMLERY-HQHKSILGVCLGH 82 (190)
T ss_pred hhHHHHHHHHh-cCCCCEEEEcHHH
Confidence 22233332 3478999999984
No 129
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=69.40 E-value=5.5 Score=46.27 Aligned_cols=77 Identities=19% Similarity=0.235 Sum_probs=50.4
Q ss_pred CCCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccc-cccCccEEEEEcCCch
Q 002281 689 TPRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGV 767 (943)
Q Consensus 689 ~pk~VlIv~K~~~~~~~~a~~l~~~L~~~~g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~DlVIvLGGDGT 767 (943)
--++++||.-++-.....+.++++.|.. .++++.+-.++.. .|....+.. ..+. -..++|+||.||| |.
T Consensus 28 g~~r~liVTd~~~~~~g~~~~v~~~L~~-~~i~~~if~~v~p----~P~~~~v~~----~~~~~~~~~~D~iIalGG-GS 97 (377)
T COG1454 28 GAKRALIVTDRGLAKLGLLDKVLDSLDA-AGIEYEVFDEVEP----EPTIETVEA----GAEVAREFGPDTIIALGG-GS 97 (377)
T ss_pred CCCceEEEECCccccchhHHHHHHHHHh-cCCeEEEecCCCC----CCCHHHHHH----HHHHHHhcCCCEEEEeCC-cc
Confidence 3478999999986666778899999965 5777666555421 121111100 0011 1357999999999 99
Q ss_pred HHHHhhhc
Q 002281 768 ILHASNLF 775 (943)
Q Consensus 768 iL~Aar~~ 775 (943)
.+-+++..
T Consensus 98 ~~D~AK~i 105 (377)
T COG1454 98 VIDAAKAI 105 (377)
T ss_pred HHHHHHHH
Confidence 99998864
No 130
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=69.35 E-value=6.7 Score=45.25 Aligned_cols=76 Identities=16% Similarity=0.078 Sum_probs=43.3
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccc-cccCccEEEEEcCCchH
Q 002281 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVI 768 (943)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~~l~~~L~~~~g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~DlVIvLGGDGTi 768 (943)
.++++||....-.....+.++.+.|.+ .++.+.+-.++. ..|....+... .+. -..++|+||.||| |..
T Consensus 31 ~~~~livt~~~~~~~g~~~~v~~~L~~-~~i~~~~f~~v~----~np~~~~v~~~----~~~~~~~~~D~IiaiGG-GS~ 100 (383)
T PRK09860 31 FTRTLIVTDNMLTKLGMAGDVQKALEE-RNIFSVIYDGTQ----PNPTTENVAAG----LKLLKENNCDSVISLGG-GSP 100 (383)
T ss_pred CCEEEEEcCcchhhCccHHHHHHHHHH-cCCeEEEeCCCC----CCcCHHHHHHH----HHHHHHcCCCEEEEeCC-chH
Confidence 378999986543333456678888854 467654433221 01111101000 001 1357999999999 999
Q ss_pred HHHhhhc
Q 002281 769 LHASNLF 775 (943)
Q Consensus 769 L~Aar~~ 775 (943)
+-+++..
T Consensus 101 iD~AK~i 107 (383)
T PRK09860 101 HDCAKGI 107 (383)
T ss_pred HHHHHHH
Confidence 9988865
No 131
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=68.60 E-value=9.3 Score=39.70 Aligned_cols=75 Identities=12% Similarity=0.135 Sum_probs=43.8
Q ss_pred EEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccccccCccEEEEEcCCchHHH--
Q 002281 693 VLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILH-- 770 (943)
Q Consensus 693 VlIv~K~~~~~~~~a~~l~~~L~~~~g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIvLGGDGTiL~-- 770 (943)
||||-..+. ....++++|.+ .|.+|.+.+.....+.. ..+ ..+|.||..||-|..-.
T Consensus 2 il~id~~ds----ft~~~~~~l~~-~g~~v~v~~~~~~~~~~--------------~~~--~~~d~iilsgGpg~p~~~~ 60 (188)
T TIGR00566 2 VLMIDNYDS----FTYNLVQYFCE-LGAEVVVKRNDSLTLQE--------------IEA--LLPLLIVISPGPCTPNEAG 60 (188)
T ss_pred EEEEECCcC----HHHHHHHHHHH-cCCceEEEECCCCCHHH--------------HHh--cCCCEEEEcCCCCChhhcc
Confidence 566655543 34557777754 36666664421100100 011 24788999999988643
Q ss_pred ----HhhhccCCCCcEEEEeCCC
Q 002281 771 ----ASNLFRGAVPPVISFNLGS 789 (943)
Q Consensus 771 ----Aar~~~~~~~PVLGIN~Gs 789 (943)
..+.+ ...+|||||-+|.
T Consensus 61 ~~~~~i~~~-~~~~PvLGIC~G~ 82 (188)
T TIGR00566 61 ISLEAIRHF-AGKLPILGVCLGH 82 (188)
T ss_pred hhHHHHHHh-ccCCCEEEECHHH
Confidence 33344 3578999999984
No 132
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=67.72 E-value=13 Score=34.76 Aligned_cols=81 Identities=10% Similarity=0.064 Sum_probs=43.5
Q ss_pred cCCCCHhhHHHHHHcC--CcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHH-HHHHHHhcCCCC
Q 002281 272 GGQVTEEGLKWLMEKG--YKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVE-KFASLVSNSSKK 348 (943)
Q Consensus 272 SGqpT~eDLa~Lk~lG--IKTVIDLRse~~ee~~~~a~e~e~~e~~GI~yIhIPV~d~~~Ps~E~v~-aFlelL~ds~~~ 348 (943)
+..++++++..+.+.+ --.|||.|+.. + |. .-...| .+++|.. .+. .....+ ..+.
T Consensus 7 ~~~~s~~el~~~l~~~~~~~~iiDvR~~~-e---~~-----~ghIpg--A~~ip~~--------~l~~~~~~~i--~~~~ 65 (110)
T cd01521 7 AFETDCWDVAIALKNGKPDFVLVDVRSAE-A---YA-----RGHVPG--AINLPHR--------EICENATAKL--DKEK 65 (110)
T ss_pred eeecCHHHHHHHHHcCCCCEEEEECCCHH-H---Hh-----cCCCCC--CEeCCHH--------HhhhHhhhcC--CCCC
Confidence 3467888887776654 23799999864 1 11 011122 2344432 111 111222 3568
Q ss_pred cEEEeCccCCc-hHHHHHHHHHHhcCC
Q 002281 349 PLYLHSKEGVW-RTYAMVSRWRQYMAR 374 (943)
Q Consensus 349 PVLVHC~AGKD-RTGALvaLlr~~lGv 374 (943)
||+++|..|.. |+..++..++ .+|.
T Consensus 66 ~vvvyc~~g~~~~s~~~a~~l~-~~G~ 91 (110)
T cd01521 66 LFVVYCDGPGCNGATKAALKLA-ELGF 91 (110)
T ss_pred eEEEEECCCCCchHHHHHHHHH-HcCC
Confidence 99999998863 5554444443 3465
No 133
>PLN02884 6-phosphofructokinase
Probab=67.39 E-value=4 Score=47.90 Aligned_cols=124 Identities=15% Similarity=0.172 Sum_probs=68.1
Q ss_pred hcccccCCCEEEEEecCCh-h-HHHHHHHHHHHHhcCCCe-EEEE-cCChhhhhhcC--------------CCC--ccce
Q 002281 683 MLMWKTTPRTVLVLKKPGP-A-LMEEAKEVASFLYHQEKM-NILV-EPDVHDIFARI--------------PGF--GFVQ 742 (943)
Q Consensus 683 ~l~w~~~pk~VlIv~K~~~-~-~~~~a~~l~~~L~~~~g~-~V~v-e~~~~~~~~~~--------------~~~--~~~~ 742 (943)
.+-|+....+|+|+.--++ + .-...+.++.++.. .|+ +|+- .......+... ... ..+.
T Consensus 46 ~~~~~p~~~rIaIltsGGdaPGmNa~Iravv~~a~~-~g~~~V~Gi~~G~~GL~~~~~~~~~l~~~~v~~i~~~GGt~LG 124 (411)
T PLN02884 46 KIYFEPEEVKAAIVTCGGLCPGLNDVIRQIVFTLEI-YGVKNIVGIPFGYRGFFEKGLSEMPLSRKVVQNIHLSGGSLLG 124 (411)
T ss_pred eEEeCCcceEEEEEcCCCCCccHhHHHHHHHHHHHH-cCCcEEEEEccCHHHHhCCCceeeecCHHHHHHHHhCCCceec
Confidence 4556777889999988775 2 33344566666543 366 5662 22222222110 000 0000
Q ss_pred ee-eccCcccc-----ccCccEEEEEcCCchHHHHhhhcc-----CCCCcEEEEeC----------CCCcccCCCCchhH
Q 002281 743 TF-YLQDTSDL-----HERVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL----------GSLGFLTSHPFEDY 801 (943)
Q Consensus 743 ~~-~~~~~~~l-----~~~~DlVIvLGGDGTiL~Aar~~~-----~~~~PVLGIN~----------GsLGFLt~~~~ed~ 801 (943)
+- .....+++ ..++|.+|+||||||+-.|.++.. +..+||+||-- -++||-|..+ .+
T Consensus 125 tsR~~~~~~~i~~~L~~~~Id~LivIGGdgS~~~a~~L~~~~~~~g~~i~vIGIPkTIDNDi~~tD~TiGFdTAv~--~~ 202 (411)
T PLN02884 125 VSRGGAKTSDIVDSIEARGINMLFVLGGNGTHAGANAIHNECRKRKMKVSVVGVPKTIDNDILLMDKTFGFDTAVE--EA 202 (411)
T ss_pred cCCCCccHHHHHHHHHHcCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEeccccccCCCcCcccCCCHHHHHH--HH
Confidence 00 00011111 247999999999999987766543 24589999932 2789888654 34
Q ss_pred HHHHHHHH
Q 002281 802 RQDLRQVI 809 (943)
Q Consensus 802 ~~~L~~ll 809 (943)
.++++++.
T Consensus 203 ~~ai~~l~ 210 (411)
T PLN02884 203 QRAINSAY 210 (411)
T ss_pred HHHHHHHH
Confidence 45555543
No 134
>cd08169 DHQ-like Dehydroquinate synthase-like which includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. Dehydroquinate synthase-like. This group contains dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. They exhibit the dehydroquinate synthase structural fold. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes ne
Probab=66.85 E-value=12 Score=42.78 Aligned_cols=92 Identities=16% Similarity=0.107 Sum_probs=49.2
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccccccCccEEEEEcCCchHH
Q 002281 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL 769 (943)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~~l~~~L~~~~g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIvLGGDGTiL 769 (943)
.++++||....-.. ....++.+.|.+..++++++-++... .+....+......-.+.-..+.|+||.||| |+++
T Consensus 23 ~~k~livtd~~v~~-~~~~~v~~~L~~~~~~~~~~~~~~e~----~k~~~~v~~~~~~~~~~~~~r~d~IIaiGG-Gsv~ 96 (344)
T cd08169 23 FDQYFFISDSGVAD-LIAHYIAEYLSKILPVHILVIEGGEE----YKTFETVTRILERAIALGANRRTAIVAVGG-GATG 96 (344)
T ss_pred CCeEEEEECccHHH-HHHHHHHHHHHhhcCceEEEeCCCCC----CCCHHHHHHHHHHHHHcCCCCCcEEEEECC-cHHH
Confidence 47889988655322 35567778875313555544332211 111111110000000011246899999999 9999
Q ss_pred HHhhhcc---CCCCcEEEEeC
Q 002281 770 HASNLFR---GAVPPVISFNL 787 (943)
Q Consensus 770 ~Aar~~~---~~~~PVLGIN~ 787 (943)
-++.... ...+|++-|.+
T Consensus 97 D~ak~vA~~~~rgip~i~VPT 117 (344)
T cd08169 97 DVAGFVASTLFRGIAFIRVPT 117 (344)
T ss_pred HHHHHHHHHhccCCcEEEecC
Confidence 8887653 34677777765
No 135
>KOG4435 consensus Predicted lipid kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=66.65 E-value=18 Score=42.48 Aligned_cols=86 Identities=22% Similarity=0.185 Sum_probs=43.7
Q ss_pred cCccEEEEEcCCchHHHHhhh-cc--CCCCcEEEEe-----CCCCcccCCC--Cchh---HHHHHHHHHcCCCCCCceee
Q 002281 754 ERVDFVACLGGDGVILHASNL-FR--GAVPPVISFN-----LGSLGFLTSH--PFED---YRQDLRQVIYGNNTLDGVYI 820 (943)
Q Consensus 754 ~~~DlVIvLGGDGTiL~Aar~-~~--~~~~PVLGIN-----~GsLGFLt~~--~~ed---~~~~L~~ll~G~~~v~~~~i 820 (943)
...|+|+|.|||||+=..+-- |+ ....||-=+- ++.---|..+ +-++ +-+++..+++++..
T Consensus 115 t~~Dii~VaGGDGT~~eVVTGi~Rrr~~~~pv~~~P~G~~~l~~~s~l~~vfe~~d~V~h~~~a~~avikde~k------ 188 (535)
T KOG4435|consen 115 TQEDIIYVAGGDGTIGEVVTGIFRRRKAQLPVGFYPGGYDNLWLKSMLPSVFENSDDVRHACEAAMAVIKDEKK------ 188 (535)
T ss_pred cCCCeEEEecCCCcHHHhhHHHHhcccccCceeeccCccchHhhhhhchhhhccchHHHHHHHHHHHHhccccc------
Confidence 345999999999998666542 22 2344552222 2221222221 1122 33455566766532
Q ss_pred eeeeEEEEEEEeCCeecCCccccceeeEEE
Q 002281 821 TLRMRLCCEIFRNGKAMPGKVFDVLNEVVV 850 (943)
Q Consensus 821 ~~R~rL~~~V~r~G~~~~~~~~~ALNEVvI 850 (943)
..+.-+|...|... ...++||++.-
T Consensus 189 ---sv~~fdv~~~gs~l--~P~fgl~glsw 213 (535)
T KOG4435|consen 189 ---SVYAFDVTTEGSTL--APEFGLGGLSW 213 (535)
T ss_pred ---ceEEEEeccCCCcc--ccccccCccch
Confidence 22333344455443 34578888764
No 136
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=66.42 E-value=2.5 Score=47.04 Aligned_cols=53 Identities=28% Similarity=0.444 Sum_probs=36.1
Q ss_pred cCccEEEEEcCCchHHHHhhhccCCCCcEEEEeC-------C---CCcccCCCCchhHHHHHHHH
Q 002281 754 ERVDFVACLGGDGVILHASNLFRGAVPPVISFNL-------G---SLGFLTSHPFEDYRQDLRQV 808 (943)
Q Consensus 754 ~~~DlVIvLGGDGTiL~Aar~~~~~~~PVLGIN~-------G---sLGFLt~~~~ed~~~~L~~l 808 (943)
.++|.+|++|||||+-.|..+.....+||+||-. | ++||-|..+. +.+.++++
T Consensus 91 ~~Id~Li~IGG~gs~~~a~~L~~~~~i~vigiPkTIDNDi~gtd~siGf~TA~~~--~~~~i~~i 153 (282)
T PF00365_consen 91 LGIDALIVIGGDGSMKGAHKLSEEFGIPVIGIPKTIDNDIPGTDYSIGFDTAVNY--IAEAIDNI 153 (282)
T ss_dssp TTESEEEEEESHHHHHHHHHHHHHHHSEEEEEEEETTSSCTTSSS-BTHHHHHHH--HHHHHHHH
T ss_pred hCCCEEEEecCCCHHHHHHHHHhcCceEEEEEeccccCCcCCCCCCcccCchhHH--HHHHHHHH
Confidence 4799999999999976665554344589999943 3 7888876542 33444444
No 137
>PRK03202 6-phosphofructokinase; Provisional
Probab=65.32 E-value=5.6 Score=45.16 Aligned_cols=52 Identities=27% Similarity=0.398 Sum_probs=37.6
Q ss_pred cCccEEEEEcCCchHHHHhhhccCCCCcEEEEeC-------C---CCcccCCCCchhHHHHHHHH
Q 002281 754 ERVDFVACLGGDGVILHASNLFRGAVPPVISFNL-------G---SLGFLTSHPFEDYRQDLRQV 808 (943)
Q Consensus 754 ~~~DlVIvLGGDGTiL~Aar~~~~~~~PVLGIN~-------G---sLGFLt~~~~ed~~~~L~~l 808 (943)
.+.|.+|++|||||+-.|.++. ...+||+||-- | ++||-|..+. +.+.++++
T Consensus 92 ~~Id~Li~IGGd~s~~~a~~L~-e~~i~vigiPkTIDNDl~gtd~s~Gf~TA~~~--~~~~i~~l 153 (320)
T PRK03202 92 LGIDALVVIGGDGSYMGAKRLT-EHGIPVIGLPGTIDNDIAGTDYTIGFDTALNT--AVEAIDRL 153 (320)
T ss_pred cCCCEEEEeCChHHHHHHHHHH-hcCCcEEEecccccCCCCCCccCcCHHHHHHH--HHHHHHHH
Confidence 4789999999999998776654 45789999943 3 7888886542 33444444
No 138
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=65.31 E-value=12 Score=39.88 Aligned_cols=79 Identities=16% Similarity=0.143 Sum_probs=46.0
Q ss_pred EEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccccccCccEEEEEcCCchHH--
Q 002281 692 TVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL-- 769 (943)
Q Consensus 692 ~VlIv~K~~~~~~~~a~~l~~~L~~~~g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIvLGGDGTiL-- 769 (943)
+|+++.... .....+.+||.+ .|+++.+-+.....+ .+..++...+|.+|..||.|..-
T Consensus 2 ~ilv~d~~~----~~~~~~~~~l~~-~G~~~~~~~~~~~~~--------------~~~~~~~~~~dgliisGGp~~~~~~ 62 (214)
T PRK07765 2 RILVVDNYD----SFVFNLVQYLGQ-LGVEAEVWRNDDPRL--------------ADEAAVAAQFDGVLLSPGPGTPERA 62 (214)
T ss_pred eEEEEECCC----cHHHHHHHHHHH-cCCcEEEEECCCcCH--------------HHHHHhhcCCCEEEECCCCCChhhc
Confidence 466666654 223457778764 466665433211100 00112234689999999998653
Q ss_pred ----HHhhhccCCCCcEEEEeCCC
Q 002281 770 ----HASNLFRGAVPPVISFNLGS 789 (943)
Q Consensus 770 ----~Aar~~~~~~~PVLGIN~Gs 789 (943)
...+.+....+|||||-+|.
T Consensus 63 ~~~~~~i~~~~~~~~PiLGIC~G~ 86 (214)
T PRK07765 63 GASIDMVRACAAAGTPLLGVCLGH 86 (214)
T ss_pred chHHHHHHHHHhCCCCEEEEccCH
Confidence 23333344579999999984
No 139
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=65.21 E-value=17 Score=33.26 Aligned_cols=27 Identities=7% Similarity=-0.133 Sum_probs=19.1
Q ss_pred CCcEEEeCccCCchHHHHHHHHHHhcCCC
Q 002281 347 KKPLYLHSKEGVWRTYAMVSRWRQYMARC 375 (943)
Q Consensus 347 ~~PVLVHC~AGKDRTGALvaLlr~~lGvs 375 (943)
+.+|+++|..|. |+..++..+. .+|.+
T Consensus 65 ~~~vv~~c~~g~-~s~~~a~~L~-~~G~~ 91 (105)
T cd01525 65 GKIIVIVSHSHK-HAALFAAFLV-KCGVP 91 (105)
T ss_pred CCeEEEEeCCCc-cHHHHHHHHH-HcCCC
Confidence 679999999998 8775555443 35653
No 140
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=64.83 E-value=12 Score=43.01 Aligned_cols=75 Identities=21% Similarity=0.268 Sum_probs=43.8
Q ss_pred CEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccc-cccCccEEEEEcCCchH
Q 002281 691 RTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVI 768 (943)
Q Consensus 691 k~VlIv~K~~~-~~~~~a~~l~~~L~~~~g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~DlVIvLGGDGTi 768 (943)
++++||.-... .......++.+.|.+ .++++.+-.++. ..|....+... ... -..++|+||.||| |..
T Consensus 26 ~r~livt~~~~~~~~g~~~~v~~~L~~-~~~~~~~~~~v~----~~p~~~~v~~~----~~~~~~~~~D~IiavGG-GS~ 95 (380)
T cd08185 26 KKALIVTGNGSSKKTGYLDRVIELLKQ-AGVEVVVFDKVE----PNPTTTTVMEG----AALAREEGCDFVVGLGG-GSS 95 (380)
T ss_pred CeEEEEeCCCchhhccHHHHHHHHHHH-cCCeEEEeCCcc----CCCCHHHHHHH----HHHHHHcCCCEEEEeCC-ccH
Confidence 78999987654 234556778888864 466665432221 11111111000 000 1247899999999 999
Q ss_pred HHHhhhc
Q 002281 769 LHASNLF 775 (943)
Q Consensus 769 L~Aar~~ 775 (943)
+-+++..
T Consensus 96 iD~aK~i 102 (380)
T cd08185 96 MDTAKAI 102 (380)
T ss_pred HHHHHHH
Confidence 9988764
No 141
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=63.83 E-value=11 Score=38.89 Aligned_cols=74 Identities=12% Similarity=0.192 Sum_probs=44.1
Q ss_pred EEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCcccc-ccCccEEEEEcCCchH---
Q 002281 693 VLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI--- 768 (943)
Q Consensus 693 VlIv~K~~~~~~~~a~~l~~~L~~~~g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~DlVIvLGGDGTi--- 768 (943)
||||...+. .+..|+++|.+ .+.+|.|-+.-.. +.+++ ...+|.||+.||.|..
T Consensus 2 il~id~~ds----f~~nl~~~l~~-~~~~~~v~~~~~~-----------------~~~~~~~~~~~~iilsgGP~~~~~~ 59 (191)
T PRK06774 2 LLLIDNYDS----FTYNLYQYFCE-LGTEVMVKRNDEL-----------------QLTDIEQLAPSHLVISPGPCTPNEA 59 (191)
T ss_pred EEEEECCCc----hHHHHHHHHHH-CCCcEEEEeCCCC-----------------CHHHHHhcCCCeEEEcCCCCChHhC
Confidence 556655442 34567777764 4666665442100 01111 1257999999999985
Q ss_pred ---HHHhhhccCCCCcEEEEeCCC
Q 002281 769 ---LHASNLFRGAVPPVISFNLGS 789 (943)
Q Consensus 769 ---L~Aar~~~~~~~PVLGIN~Gs 789 (943)
+...+.+ ...+|||||-+|.
T Consensus 60 ~~~~~~i~~~-~~~~PiLGIC~G~ 82 (191)
T PRK06774 60 GISLAVIRHF-ADKLPILGVCLGH 82 (191)
T ss_pred CCchHHHHHh-cCCCCEEEECHHH
Confidence 3333344 3478999999884
No 142
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=63.33 E-value=11 Score=42.90 Aligned_cols=87 Identities=17% Similarity=0.208 Sum_probs=49.7
Q ss_pred CEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccc-cccCccEEEEEcCCchH
Q 002281 691 RTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVI 768 (943)
Q Consensus 691 k~VlIv~K~~~-~~~~~a~~l~~~L~~~~g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~DlVIvLGGDGTi 768 (943)
++++||.-... .......++.+.|.+ .++++.+-.++. ..|....+... .+. ...++|+||.||| |++
T Consensus 26 ~r~lvVt~~~~~~~~g~~~~v~~~L~~-~g~~~~~~~~v~----~~p~~~~v~~~----~~~~~~~~~D~IIavGG-GSv 95 (357)
T cd08181 26 KRALIVTGKSSAKKNGSLDDVTKALEE-LGIEYEIFDEVE----ENPSLETIMEA----VEIAKKFNADFVIGIGG-GSP 95 (357)
T ss_pred CEEEEEeCCchHhhcCcHHHHHHHHHH-cCCeEEEeCCCC----CCcCHHHHHHH----HHHHHhcCCCEEEEeCC-chH
Confidence 78999987664 333345667777754 466555322221 01111101000 000 1247899999999 999
Q ss_pred HHHhhhcc------------------CCCCcEEEEeC
Q 002281 769 LHASNLFR------------------GAVPPVISFNL 787 (943)
Q Consensus 769 L~Aar~~~------------------~~~~PVLGIN~ 787 (943)
+-+++... ...+|++.|-+
T Consensus 96 iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~P~i~VPT 132 (357)
T cd08181 96 LDAAKAIAVLIKNPDLKVELYFRSKYLKALPVVAIPT 132 (357)
T ss_pred HHHHHHHHHHHhCCCcHHHHhcccccCCCCCEEEEeC
Confidence 99998532 23578888875
No 143
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=63.03 E-value=13 Score=33.64 Aligned_cols=29 Identities=3% Similarity=-0.079 Sum_probs=19.9
Q ss_pred CCCCcEEEeCccCCchHHHHHHHHHHhcCCC
Q 002281 345 SSKKPLYLHSKEGVWRTYAMVSRWRQYMARC 375 (943)
Q Consensus 345 s~~~PVLVHC~AGKDRTGALvaLlr~~lGvs 375 (943)
..+.+|+++|..|. |+..++..+ ...|.+
T Consensus 54 ~~~~~ivv~c~~g~-~s~~~~~~l-~~~G~~ 82 (96)
T cd01529 54 GRATRYVLTCDGSL-LARFAAQEL-LALGGK 82 (96)
T ss_pred CCCCCEEEEeCChH-HHHHHHHHH-HHcCCC
Confidence 45679999999887 877655444 335653
No 144
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=62.94 E-value=5.2 Score=45.66 Aligned_cols=55 Identities=24% Similarity=0.282 Sum_probs=38.4
Q ss_pred cCccEEEEEcCCchHHHHhhhcc-----CCCCcEEEEeC-------C---CCcccCCCCchhHHHHHHHHHc
Q 002281 754 ERVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL-------G---SLGFLTSHPFEDYRQDLRQVIY 810 (943)
Q Consensus 754 ~~~DlVIvLGGDGTiL~Aar~~~-----~~~~PVLGIN~-------G---sLGFLt~~~~ed~~~~L~~ll~ 810 (943)
.+.|.+|++|||||+-.|..+.. ...+||+||-- | ++||-|..+ .+.+.++++..
T Consensus 91 ~~I~~Lv~IGGd~s~~~a~~L~e~~~~~~~~i~vigiPkTIDNDl~~td~s~Gf~TA~~--~~~~~i~~l~~ 160 (338)
T cd00363 91 HGIDALVVIGGDGSYTGADLLTEEWPSKYQGFNVIGLPGTIDNDIKGTDYTIGFDTALK--TIVEAIDRIRD 160 (338)
T ss_pred hCCCEEEEeCCHHHHHHHHHHHHHHHhcCCCccEEEeeecccCCCcCcccCcCHHHHHH--HHHHHHHHHHH
Confidence 47899999999999988766542 23789999943 2 788877643 33455555543
No 145
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=62.34 E-value=38 Score=29.50 Aligned_cols=29 Identities=17% Similarity=0.233 Sum_probs=18.9
Q ss_pred CCCCcEEEeCccCCchHHHHHHHHHHhcCCC
Q 002281 345 SSKKPLYLHSKEGVWRTYAMVSRWRQYMARC 375 (943)
Q Consensus 345 s~~~PVLVHC~AGKDRTGALvaLlr~~lGvs 375 (943)
..+.+++++|..|. |+-.++..++. +|..
T Consensus 54 ~~~~~iv~~c~~g~-~a~~~~~~l~~-~G~~ 82 (100)
T smart00450 54 DKDKPVVVYCRSGN-RSAKAAWLLRE-LGFK 82 (100)
T ss_pred CCCCeEEEEeCCCc-HHHHHHHHHHH-cCCC
Confidence 45689999997777 76555444433 4544
No 146
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=61.84 E-value=54 Score=33.55 Aligned_cols=99 Identities=10% Similarity=0.119 Sum_probs=46.4
Q ss_pred CCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhh----HHhhhcCCcEEEEEec---CCCCCCCHHHHHHHH-HHHhcC
Q 002281 274 QVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAI----DDAILSGKVELIKIPV---EVRTAPTMEQVEKFA-SLVSNS 345 (943)
Q Consensus 274 qpT~eDLa~Lk~lGIKTVIDLRse~~ee~~~~a~e----~e~~e~~GI~yIhIPV---~d~~~Ps~E~v~aFl-elL~ds 345 (943)
.++.+++..+.+.+=..|||.|+.+.....+.... ...-...|- +++|. .....+..+.+...+ ++....
T Consensus 37 ~vs~~el~~~l~~~~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIPGA--v~ip~~~~~~l~~~~~~~~~~~l~~~~~~~ 114 (162)
T TIGR03865 37 VLDTEAAQALLARGPVALIDVYPRPPKPKNLLEGTVWRDEPRLNIPGS--LWLPNTGYGNLAPAWQAYFRRGLERATGGD 114 (162)
T ss_pred ccCHHHHHHHHhCCCcEEEECCCCccccccccccceeccccCCCCCCc--EEecccCCCCCCCchhHHHHHHHHHhcCCC
Confidence 57888887776665456999997541000010000 000012332 33442 211222222222222 211113
Q ss_pred CCCcEEEeCccCCchHHHHHHHHHHhcCCC
Q 002281 346 SKKPLYLHSKEGVWRTYAMVSRWRQYMARC 375 (943)
Q Consensus 346 ~~~PVLVHC~AGKDRTGALvaLlr~~lGvs 375 (943)
.+.||+++|..|.-|+..++.++ ..+|.+
T Consensus 115 ~d~~IVvYC~~G~~~S~~aa~~L-~~~G~~ 143 (162)
T TIGR03865 115 KDRPLVFYCLADCWMSWNAAKRA-LAYGYS 143 (162)
T ss_pred CCCEEEEEECCCCHHHHHHHHHH-HhcCCc
Confidence 57899999999885666444443 334543
No 147
>cd08175 G1PDH Glycerol-1-phosphate dehydrogenase (G1PDH) catalyzes the reversible reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in an NADH-dependent manner. Glycerol-1-phosphate dehydrogenase (G1PDH) plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires a Ni++ ion. In Bacillus subtilis, it has been described as AraM gene in L-arabinose (ara) operon. AraM protein forms homodimer. This family is bacteria specific.
Probab=61.75 E-value=14 Score=41.80 Aligned_cols=89 Identities=17% Similarity=0.188 Sum_probs=49.5
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccccccCccEEEEEcCCchHH
Q 002281 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL 769 (943)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~~l~~~L~~~~g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIvLGGDGTiL 769 (943)
.++++||....-.... ..++.+.|.+ .++++.+...... ...+.+..+... .+.+.+++|+||.||| |.++
T Consensus 23 ~~~~livtd~~~~~~~-~~~v~~~l~~-~~i~~~~~~~~~~--~~~pt~~~v~~~----~~~~~~~~d~IIaIGG-Gs~~ 93 (348)
T cd08175 23 YKKALIVADENTYAAA-GKKVEALLKR-AGVVVLLIVLPAG--DLIADEKAVGRV----LKELERDTDLIIAVGS-GTIN 93 (348)
T ss_pred CCcEEEEECCcHHHHH-HHHHHHHHHH-CCCeeEEeecCCC--cccCCHHHHHHH----HHHhhccCCEEEEECC-cHHH
Confidence 3678999855432222 4678888854 4664432111100 000111111110 0111227899999999 9999
Q ss_pred HHhhhcc-CCCCcEEEEeC
Q 002281 770 HASNLFR-GAVPPVISFNL 787 (943)
Q Consensus 770 ~Aar~~~-~~~~PVLGIN~ 787 (943)
-+++... ...+|++.|-+
T Consensus 94 D~aK~vA~~~~~p~i~IPT 112 (348)
T cd08175 94 DITKYVSYKTGIPYISVPT 112 (348)
T ss_pred HHHHHHHHhcCCCEEEecC
Confidence 9999764 24679998875
No 148
>cd08178 AAD_C C-terminal alcohol dehydrogenase domain of the acetaldehyde dehydrogenase-alcohol dehydrogenase bifunctional two-domain protein (AAD). Alcohol dehydrogenase domain located on the C-terminal of a bifunctional two-domain protein. The N-terminal of the protein contains an acetaldehyde-CoA dehydrogenase domain. This protein is involved in pyruvate metabolism. Pyruvate is converted to acetyl-CoA and formate by pyruvate formate-lysase (PFL). Under anaerobic condition, acetyl-CoA is reduced to acetaldehyde and ethanol by this two-domain protein. Acetyl-CoA is first converted into an enzyme-bound thiohemiacetal by the N-terminal acetaldehyde dehydrogenase domain. The enzyme-bound thiohemiacetal is subsequently reduced by the C-terminal NAD+-dependent alcohol dehydrogenase domain. In E. coli, this protein is called AdhE and was shown pyruvate formate-lysase (PFL) deactivase activity, which is involved in the inactivation of PFL, a key enzyme in anaerobic metabolism. In Escherichi
Probab=61.35 E-value=8.7 Score=44.41 Aligned_cols=76 Identities=17% Similarity=0.181 Sum_probs=42.1
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccc-cccCccEEEEEcCCchH
Q 002281 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVI 768 (943)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~~l~~~L~~~~g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~DlVIvLGGDGTi 768 (943)
.++++||....-.......++.+.|.+ .|+++.+-.++. ..|....+... .+. ...++|+||.||| |..
T Consensus 21 ~~k~liVtd~~~~~~g~~~~v~~~L~~-~gi~~~~f~~v~----~~p~~~~v~~~----~~~~~~~~~D~IIaiGG-GS~ 90 (398)
T cd08178 21 KKRAFIVTDRFMVKLGYVDKVIDVLKR-RGVETEVFSDVE----PDPSLETVRKG----LELMNSFKPDTIIALGG-GSP 90 (398)
T ss_pred CCeEEEEcChhHHhCccHHHHHHHHHH-CCCeEEEecCCC----CCcCHHHHHHH----HHHHHhcCCCEEEEeCC-ccH
Confidence 378999985432122245678888864 467665433321 11111111100 001 1347899999999 888
Q ss_pred HHHhhhc
Q 002281 769 LHASNLF 775 (943)
Q Consensus 769 L~Aar~~ 775 (943)
+-+++..
T Consensus 91 iD~AK~i 97 (398)
T cd08178 91 MDAAKIM 97 (398)
T ss_pred HHHHHHH
Confidence 8888764
No 149
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=61.28 E-value=12 Score=42.99 Aligned_cols=74 Identities=14% Similarity=0.165 Sum_probs=41.5
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccc-cccCccEEEEEcCCchHH
Q 002281 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVIL 769 (943)
Q Consensus 691 k~VlIv~K~~~~~~~~a~~l~~~L~~~~g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~DlVIvLGGDGTiL 769 (943)
++++||....-.......++.+.|.+ .++++.+-.++. ..|....+... .+. ...++|+||.||| |.++
T Consensus 31 ~~~lvvtd~~~~~~g~~~~v~~~L~~-~g~~~~~~~~v~----~~p~~~~v~~~----~~~~~~~~~D~IIaiGG-GS~i 100 (382)
T PRK10624 31 KKALIVTDKTLVKCGVVAKVTDVLDA-AGLAYEIYDGVK----PNPTIEVVKEG----VEVFKASGADYLIAIGG-GSPQ 100 (382)
T ss_pred CEEEEEeCcchhhCcchHHHHHHHHH-CCCeEEEeCCCC----CCcCHHHHHHH----HHHHHhcCCCEEEEeCC-hHHH
Confidence 78999976542222346677777754 466655433221 11111111000 011 1247899999999 9999
Q ss_pred HHhhh
Q 002281 770 HASNL 774 (943)
Q Consensus 770 ~Aar~ 774 (943)
-+++.
T Consensus 101 D~aK~ 105 (382)
T PRK10624 101 DTCKA 105 (382)
T ss_pred HHHHH
Confidence 99974
No 150
>TIGR01357 aroB 3-dehydroquinate synthase. This model represents 3-dehydroquinate synthase, the enzyme catalyzing the second of seven steps in the shikimate pathway of chorismate biosynthesis. Chorismate is the last common intermediate in the biosynthesis of all three aromatic amino acids.
Probab=61.18 E-value=16 Score=41.32 Aligned_cols=32 Identities=22% Similarity=0.254 Sum_probs=25.9
Q ss_pred CccEEEEEcCCchHHHHhhhcc---CCCCcEEEEeC
Q 002281 755 RVDFVACLGGDGVILHASNLFR---GAVPPVISFNL 787 (943)
Q Consensus 755 ~~DlVIvLGGDGTiL~Aar~~~---~~~~PVLGIN~ 787 (943)
+.|+||.+|| |+++-+++... ...+|++.|.+
T Consensus 81 r~d~IIavGG-Gsv~D~aK~iA~~~~~~~p~i~VPT 115 (344)
T TIGR01357 81 RSSTIIALGG-GVVGDLAGFVAATYMRGIRFIQVPT 115 (344)
T ss_pred CCCEEEEEcC-hHHHHHHHHHHHHHccCCCEEEecC
Confidence 4699999999 99999888764 45678888775
No 151
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=60.95 E-value=12 Score=42.82 Aligned_cols=75 Identities=17% Similarity=0.252 Sum_probs=42.6
Q ss_pred CEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccc-cccCccEEEEEcCCchH
Q 002281 691 RTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVI 768 (943)
Q Consensus 691 k~VlIv~K~~~-~~~~~a~~l~~~L~~~~g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~DlVIvLGGDGTi 768 (943)
++++||.-.+. .......++.+.|.+ .++++.+-.++.. .|....+... ... ...++|+||.+|| |..
T Consensus 24 ~r~livt~~~~~~~~g~~~~v~~~L~~-~g~~~~~~~~v~~----~p~~~~v~~~----~~~~~~~~~D~IIavGG-GSv 93 (375)
T cd08179 24 KKAFIVTGGGSMKKFGFLDKVEAYLKE-AGIEVEVFEGVEP----DPSVETVLKG----AEAMREFEPDWIIALGG-GSP 93 (375)
T ss_pred CeEEEEeCchHHHhCChHHHHHHHHHH-cCCeEEEeCCCCC----CcCHHHHHHH----HHHHHhcCCCEEEEeCC-ccH
Confidence 78898875442 333456778888854 4666654333210 1111111000 001 1247899999999 999
Q ss_pred HHHhhhc
Q 002281 769 LHASNLF 775 (943)
Q Consensus 769 L~Aar~~ 775 (943)
+-+++..
T Consensus 94 iD~AK~i 100 (375)
T cd08179 94 IDAAKAM 100 (375)
T ss_pred HHHHHHH
Confidence 9988864
No 152
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=60.89 E-value=33 Score=39.45 Aligned_cols=27 Identities=11% Similarity=0.065 Sum_probs=19.7
Q ss_pred CCCcEEEeCc-cCCchHHHHHHHHHHhcCC
Q 002281 346 SKKPLYLHSK-EGVWRTYAMVSRWRQYMAR 374 (943)
Q Consensus 346 ~~~PVLVHC~-AGKDRTGALvaLlr~~lGv 374 (943)
.+.+++++|. .|. |++.++.++.. +|.
T Consensus 87 ~~~~ivvyC~rgG~-RS~~aa~~L~~-~G~ 114 (345)
T PRK11784 87 ANPRGLLYCWRGGL-RSGSVQQWLKE-AGI 114 (345)
T ss_pred CCCeEEEEECCCCh-HHHHHHHHHHH-cCC
Confidence 5679999996 555 99977666544 565
No 153
>cd08192 Fe-ADH7 Iron-containing alcohol dehydrogenases-like, involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. NAD-dependent iron-containing alcohol dehydrogenase-like. Proteins in this family are NAD-dependent alcohol dehydrogenases which are involved in the linear alkylbenzenesulfonate (LAS) degradation pathway. They catalyze the oxidation of beta-hydroxy CoA ester to beta-oxo CoA ester, which then be subject to CoA-dependent thiolysis to yield acetyl-CoA and 6-C8-SPC-CoA. The major laundry surfactant in worldwide use is commercial linear alkylbenzenesulfonate (LAS) which contains 20 congeners of linear alkanes (C10 to C13). LAS is fully biodegradable in oxic environments. Degradation involves microbial communities. Parvibaculum lavamentivorans DS-1T is a representative member of many heterotrophic, LAS-degrading communities, in which it catalyzes the first steps of LAS degradation. Strain DS-1T is a small heterotrophic bacterium able to omega-oxygenate the comm
Probab=60.63 E-value=8.2 Score=44.02 Aligned_cols=76 Identities=20% Similarity=0.220 Sum_probs=43.1
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCcccc-ccCccEEEEEcCCchH
Q 002281 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 768 (943)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~~l~~~L~~~~g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~DlVIvLGGDGTi 768 (943)
.++++||.-..-.......++.+.|.+ .|+++.+-..+. ..|....+... .... ..++|+||.||| |++
T Consensus 24 ~~~~liv~~~~~~~~~~~~~v~~~L~~-~g~~~~~~~~v~----~~p~~~~v~~~----~~~~~~~~~d~IIaiGG-GSv 93 (370)
T cd08192 24 IKRPLIVTDPGLAALGLVARVLALLED-AGLAAALFDEVP----PNPTEAAVEAG----LAAYRAGGCDGVIAFGG-GSA 93 (370)
T ss_pred CCeEEEEcCcchhhCccHHHHHHHHHH-cCCeEEEeCCCC----CCCCHHHHHHH----HHHHHhcCCCEEEEeCC-chH
Confidence 378999976553323356778888854 466654322221 11111111000 0111 257899999999 999
Q ss_pred HHHhhhc
Q 002281 769 LHASNLF 775 (943)
Q Consensus 769 L~Aar~~ 775 (943)
+-+++..
T Consensus 94 iD~aK~i 100 (370)
T cd08192 94 LDLAKAV 100 (370)
T ss_pred HHHHHHH
Confidence 9988764
No 154
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=60.41 E-value=12 Score=41.77 Aligned_cols=86 Identities=22% Similarity=0.240 Sum_probs=48.0
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCcccc-ccCccEEEEEcCCchH
Q 002281 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 768 (943)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~~l~~~L~~~~g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~DlVIvLGGDGTi 768 (943)
.++++||.-..-.. ....++.+.|.+. +++.+...+. ..+.+..+... .+.+ ..++|+||.||| |++
T Consensus 23 ~~~~liv~~~~~~~-~~~~~v~~~l~~~--~~~~~~~~~~----~~p~~~~v~~~----~~~~~~~~~d~IIaiGG-Gs~ 90 (332)
T cd07766 23 FDRALVVSDEGVVK-GVGEKVADSLKKL--IAVHIFDGVG----PNPTFEEVKEA----VERARAAEVDAVIAVGG-GST 90 (332)
T ss_pred CCeEEEEeCCchhh-hHHHHHHHHHHhc--CcEEEeCCcC----CCcCHHHHHHH----HHHHHhcCcCEEEEeCC-chH
Confidence 47899998544322 4456677777532 3332211111 00111111110 0111 247899999999 999
Q ss_pred HHHhhhccC---CCCcEEEEeC
Q 002281 769 LHASNLFRG---AVPPVISFNL 787 (943)
Q Consensus 769 L~Aar~~~~---~~~PVLGIN~ 787 (943)
+-+++.... ..+|++.|-+
T Consensus 91 ~D~aK~ia~~~~~~~p~i~iPT 112 (332)
T cd07766 91 LDTAKAVAALLNRGLPIIIVPT 112 (332)
T ss_pred HHHHHHHHHHhcCCCCEEEEeC
Confidence 999987532 2789998875
No 155
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=60.40 E-value=19 Score=40.69 Aligned_cols=86 Identities=13% Similarity=0.087 Sum_probs=50.5
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCcccc-ccCccEEEEEcCCchH
Q 002281 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 768 (943)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~~l~~~L~~~~g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~DlVIvLGGDGTi 768 (943)
.++++||....-.. ....++.+.|.+ .++++.+. .+. ..+....+... .+.. ..++|+||.+|| |..
T Consensus 22 ~~r~livt~~~~~~-~~~~~v~~~L~~-~~i~~~~~-~~~----~~p~~~~v~~~----~~~~~~~~~D~IIavGG-GS~ 89 (351)
T cd08170 22 GKRALIIADEFVLD-LVGAKIEESLAA-AGIDARFE-VFG----GECTRAEIERL----AEIARDNGADVVIGIGG-GKT 89 (351)
T ss_pred CCeEEEEECHHHHH-HHHHHHHHHHHh-CCCeEEEE-EeC----CcCCHHHHHHH----HHHHhhcCCCEEEEecC-chh
Confidence 37899998543322 456778888854 46665322 110 11111101000 0011 247899999999 999
Q ss_pred HHHhhhccC-CCCcEEEEeC
Q 002281 769 LHASNLFRG-AVPPVISFNL 787 (943)
Q Consensus 769 L~Aar~~~~-~~~PVLGIN~ 787 (943)
+-+++...- ..+|++.|-+
T Consensus 90 iD~aK~ia~~~~~P~iaIPT 109 (351)
T cd08170 90 LDTAKAVADYLGAPVVIVPT 109 (351)
T ss_pred hHHHHHHHHHcCCCEEEeCC
Confidence 999997642 4689999875
No 156
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=60.13 E-value=16 Score=41.34 Aligned_cols=96 Identities=14% Similarity=0.172 Sum_probs=54.5
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccccccCccEEEEEcCCchHHH
Q 002281 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILH 770 (943)
Q Consensus 691 k~VlIv~K~~~~~~~~a~~l~~~L~~~~g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIvLGGDGTiL~ 770 (943)
++++||.-.... .....++.+.|.+ .++++.+-..+. ..|....+..... .-...++|+||.+|| |+++-
T Consensus 23 ~r~liv~d~~~~-~~~~~~v~~~l~~-~~~~~~~~~~~~----~~p~~~~v~~~~~---~~~~~~~d~iiavGG-Gs~~D 92 (345)
T cd08171 23 KKVVVIGGKTAL-AAAKDKIKAALEQ-SGIEITDFIWYG----GESTYENVERLKK---NPAVQEADMIFAVGG-GKAID 92 (345)
T ss_pred CEEEEEeCHHHH-HHHHHHHHHHHHH-CCCeEEEEEecC----CCCCHHHHHHHHH---HHhhcCCCEEEEeCC-cHHHH
Confidence 789999765432 2335677777754 466553211110 0111110100000 001347899999999 99999
Q ss_pred HhhhccC-CCCcEEEEeC--CCCcccCCC
Q 002281 771 ASNLFRG-AVPPVISFNL--GSLGFLTSH 796 (943)
Q Consensus 771 Aar~~~~-~~~PVLGIN~--GsLGFLt~~ 796 (943)
+++.... ..+|++.|.+ |+=+..+.+
T Consensus 93 ~aK~ia~~~~~p~i~VPTt~gtgse~t~~ 121 (345)
T cd08171 93 TVKVLADKLGKPVFTFPTIASNCAAVTAV 121 (345)
T ss_pred HHHHHHHHcCCCEEEecCccccCccccce
Confidence 9997642 4679999975 555555554
No 157
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=59.55 E-value=11 Score=43.02 Aligned_cols=76 Identities=21% Similarity=0.324 Sum_probs=42.3
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCcccc-ccCccEEEEEcCCchH
Q 002281 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 768 (943)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~~l~~~L~~~~g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~DlVIvLGGDGTi 768 (943)
.++++||.-..-.......++.+.|.+ .++++.+-..+. ..+....+... .... ..++|+||.||| |++
T Consensus 23 ~~~~lvv~~~~~~~~~~~~~v~~~L~~-~~~~~~~~~~~~----~~p~~~~v~~~----~~~~~~~~~d~IiaiGG-Gs~ 92 (370)
T cd08551 23 GRKALIVTDPGLVKTGVLDKVIDSLKE-AGIEVVIFDGVE----PNPTLSNVDAA----VAAYREEGCDGVIAVGG-GSV 92 (370)
T ss_pred CCeEEEEeCcchhhCccHHHHHHHHHH-cCCeEEEECCCC----CCCCHHHHHHH----HHHHHhcCCCEEEEeCC-chH
Confidence 478999976553222445677777753 466555322221 01111111100 0111 246899999999 999
Q ss_pred HHHhhhc
Q 002281 769 LHASNLF 775 (943)
Q Consensus 769 L~Aar~~ 775 (943)
+-+++..
T Consensus 93 ~D~AK~v 99 (370)
T cd08551 93 LDTAKAI 99 (370)
T ss_pred HHHHHHH
Confidence 9998875
No 158
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=59.19 E-value=14 Score=42.50 Aligned_cols=88 Identities=19% Similarity=0.240 Sum_probs=50.4
Q ss_pred CCEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccc-cccCccEEEEEcCCch
Q 002281 690 PRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGV 767 (943)
Q Consensus 690 pk~VlIv~K~~~-~~~~~a~~l~~~L~~~~g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~DlVIvLGGDGT 767 (943)
.++++||.-... .......++.+.|.+ .|+++.+-.++. ..|....+... ... ...++|+||.||| |+
T Consensus 28 ~~r~livt~~~~~~~~~~~~~v~~~L~~-~g~~~~~~~~v~----~~p~~~~v~~~----~~~~~~~~~D~IIaiGG-GS 97 (382)
T cd08187 28 GKKVLLVYGGGSIKKNGLYDRVIASLKE-AGIEVVELGGVE----PNPRLETVREG----IELCKEEKVDFILAVGG-GS 97 (382)
T ss_pred CCEEEEEeCCcHHHhcCcHHHHHHHHHH-cCCeEEEECCcc----CCCCHHHHHHH----HHHHHHcCCCEEEEeCC-hH
Confidence 378999976543 223445667777754 467665432221 11111000000 000 1247899999999 99
Q ss_pred HHHHhhhccC-------------------CCCcEEEEeC
Q 002281 768 ILHASNLFRG-------------------AVPPVISFNL 787 (943)
Q Consensus 768 iL~Aar~~~~-------------------~~~PVLGIN~ 787 (943)
.+-+++...- ..+|++.|.+
T Consensus 98 ~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPT 136 (382)
T cd08187 98 VIDSAKAIAAGAPYDGDVWDFFTGKAKIEKALPVGTVLT 136 (382)
T ss_pred HHHHHHHHHhHhhCCCCHHHHhcccCCCCCCCCEEEEeC
Confidence 9999986422 3579999986
No 159
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=59.08 E-value=14 Score=42.59 Aligned_cols=75 Identities=16% Similarity=0.228 Sum_probs=42.0
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccc-cccCccEEEEEcCCchH
Q 002281 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVI 768 (943)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~~l~~~L~~~~g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~DlVIvLGGDGTi 768 (943)
.++++||....-.......++.+.|.+ .++++.+-.++. ..|....+... .+. ...++|+||.||| |.+
T Consensus 29 ~~r~lvvt~~~~~~~g~~~~v~~~L~~-~~i~~~~~~~v~----~~p~~~~v~~~----~~~~~~~~~D~IiaiGG-GSv 98 (379)
T TIGR02638 29 FKKALVVTDKDLIKFGVADKVTDLLDE-AGIAYELFDEVK----PNPTITVVKAG----VAAFKASGADYLIAIGG-GSP 98 (379)
T ss_pred CCEEEEEcCcchhhccchHHHHHHHHH-CCCeEEEECCCC----CCcCHHHHHHH----HHHHHhcCCCEEEEeCC-hHH
Confidence 378999987552222345677777754 466655433321 11111111000 001 1247899999999 999
Q ss_pred HHHhhh
Q 002281 769 LHASNL 774 (943)
Q Consensus 769 L~Aar~ 774 (943)
+-+++.
T Consensus 99 iD~aKa 104 (379)
T TIGR02638 99 IDTAKA 104 (379)
T ss_pred HHHHHH
Confidence 998864
No 160
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=58.78 E-value=8.6 Score=46.69 Aligned_cols=44 Identities=30% Similarity=0.349 Sum_probs=32.9
Q ss_pred cCccEEEEEcCCchHHHHhhhcc-----CCCCcEEEEeC-------C-----CCcccCCCC
Q 002281 754 ERVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL-------G-----SLGFLTSHP 797 (943)
Q Consensus 754 ~~~DlVIvLGGDGTiL~Aar~~~-----~~~~PVLGIN~-------G-----sLGFLt~~~ 797 (943)
-+.|.+|++|||||+-.|+.+.. +..++|+||-- | ++||-|..+
T Consensus 160 ~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGIPkTIDNDl~~~~td~s~GFdTA~~ 220 (539)
T TIGR02477 160 LKLDGLVIIGGDDSNTNAALLAEYFAKHGLKTQVIGVPKTIDGDLKNQFIETSFGFDTACK 220 (539)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeeeecCCCCCCCCCCCcCHHHHHH
Confidence 37899999999999988877542 45689999942 2 677766543
No 161
>PRK00002 aroB 3-dehydroquinate synthase; Reviewed
Probab=58.36 E-value=20 Score=40.83 Aligned_cols=91 Identities=18% Similarity=0.135 Sum_probs=48.9
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEE--EcCChhhhhhcCCCCccceeeeccCccccccCccEEEEEcCCch
Q 002281 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNIL--VEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGV 767 (943)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~~l~~~L~~~~g~~V~--ve~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIvLGGDGT 767 (943)
.++++||.-..-.. ....++.+.|.+ .++++. +-++.. ..+....+......-.+.-..+.|+||.+|| |+
T Consensus 31 ~~~~livtd~~~~~-~~~~~v~~~L~~-~gi~~~~~~~~~~e----~~~~~~~v~~~~~~~~~~~~~r~d~IIavGG-Gs 103 (358)
T PRK00002 31 GKKVAIVTDETVAP-LYLEKLRASLEA-AGFEVDVVVLPDGE----QYKSLETLEKIYDALLEAGLDRSDTLIALGG-GV 103 (358)
T ss_pred CCeEEEEECCchHH-HHHHHHHHHHHh-cCCceEEEEeCCCC----CCCCHHHHHHHHHHHHHcCCCCCCEEEEEcC-cH
Confidence 47899998655322 255677777754 355433 212110 0011100000000000001135699999999 99
Q ss_pred HHHHhhhcc---CCCCcEEEEeC
Q 002281 768 ILHASNLFR---GAVPPVISFNL 787 (943)
Q Consensus 768 iL~Aar~~~---~~~~PVLGIN~ 787 (943)
++-+++... ...+|++.|.+
T Consensus 104 v~D~aK~iA~~~~~gip~i~IPT 126 (358)
T PRK00002 104 IGDLAGFAAATYMRGIRFIQVPT 126 (358)
T ss_pred HHHHHHHHHHHhcCCCCEEEcCc
Confidence 999998764 45788887765
No 162
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=58.28 E-value=8.8 Score=46.88 Aligned_cols=43 Identities=28% Similarity=0.279 Sum_probs=32.6
Q ss_pred cCccEEEEEcCCchHHHHhhhcc-----CCCCcEEEEeC-------C-----CCcccCCC
Q 002281 754 ERVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL-------G-----SLGFLTSH 796 (943)
Q Consensus 754 ~~~DlVIvLGGDGTiL~Aar~~~-----~~~~PVLGIN~-------G-----sLGFLt~~ 796 (943)
-+.|.+|++|||||+-.|+.+.. +..++|+||-- | ++||=|..
T Consensus 189 l~Id~LViIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDL~~td~e~s~GFdTA~ 248 (568)
T PLN02251 189 LDLDGLVVIGGDDSNTNACLLAEYFRAKNLKTRVIGCPKTIDGDLKSKEVPTSFGFDTAC 248 (568)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHHhcCCCeeEEEeCceEeCCCCCCcCCCCCCHHHHH
Confidence 37899999999999998877542 45589999842 2 66877654
No 163
>cd08177 MAR Maleylacetate reductase is involved in many aromatic compounds degradation pathways of aerobic microbes. Maleylacetate reductases (MAR) play an important role in the degradation of aromatic compounds in aerobic microbes. In fungi and yeasts, the enzymes are involved in the catabolism of compounds such as phenol, tyrosine, benzoate, 4-hydroxybenzoate and resorcinol. In bacteria, the enzymes contribute to the degradation of resorcinol, 2,4-dihydroxybenzoate ([beta]-resorcylate) and 2,6-dihydroxybenzoate ([gamma]-resorcylate) via hydroxyquinol and maleylacetate. Maleylacetate reductases catalyze NADH- or NADPH-dependent reduction, at the carbon-carbon double bond, of maleylacetate or 2-chloromaleylacetate to 3-oxoadipate. In the case of 2-chloromaleylacetate, Maleylacetate reductases initially catalyses the NAD(P)H-dependent dechlorination to maleylacetate, which is then reduced to 3-oxoadipate. This enzyme is a homodimer. It is inhibited by thiol-blocking reagents such as p-
Probab=57.64 E-value=14 Score=41.68 Aligned_cols=85 Identities=19% Similarity=0.183 Sum_probs=48.6
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCcccc-ccCccEEEEEcCCchH
Q 002281 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 768 (943)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~~l~~~L~~~~g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~DlVIvLGGDGTi 768 (943)
.++++||.-..-... ...++.+.|.+. ++.++- ++. ..+....++.. .+.. ..++|+||.||| |++
T Consensus 23 ~~~~livt~~~~~~~-~~~~v~~~l~~~-~~~~~~--~~~----~~p~~~~v~~~----~~~~~~~~~d~IIaiGG-Gs~ 89 (337)
T cd08177 23 ASRALVLTTPSLATK-LAERVASALGDR-VAGTFD--GAV----MHTPVEVTEAA----VAAAREAGADGIVAIGG-GST 89 (337)
T ss_pred CCeEEEEcChHHHHH-HHHHHHHHhccC-CcEEeC--CCC----CCCCHHHHHHH----HHHHHhcCCCEEEEeCC-cHH
Confidence 368999976543222 566788888543 343331 110 01111000000 0111 247899999999 999
Q ss_pred HHHhhhccC-CCCcEEEEeC
Q 002281 769 LHASNLFRG-AVPPVISFNL 787 (943)
Q Consensus 769 L~Aar~~~~-~~~PVLGIN~ 787 (943)
+-+++.... ..+|++.|-+
T Consensus 90 iD~aK~ia~~~~~p~i~IPT 109 (337)
T cd08177 90 IDLAKAIALRTGLPIIAIPT 109 (337)
T ss_pred HHHHHHHHHHhcCCEEEEcC
Confidence 999987642 3679988875
No 164
>cd08173 Gro1PDH Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH, EC 1.1.1.261) plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids. It catalyzes the reversible conversion between dihydroxyacetone phosphate and glycerol-1-phosphate using either NADH or NADPH as a coenzyme. The activity is zinc-dependent. One characteristic feature of archaea is that their cellular membrane has an ether linkage between the glycerol backbone and the hydrocarbon residues. The polar lipids of the members of Archaea consist of di- and tetraethers of glycerol with isoprenoid alcohols bound at the sn-2 and sn-3 positions of the glycerol moiety. The archaeal polar lipids have the enantiomeric configuration of a glycerophosph
Probab=57.49 E-value=45 Score=37.71 Aligned_cols=83 Identities=20% Similarity=0.304 Sum_probs=48.3
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCCh-hhhhhcCCCCccceeeeccCccccccCccEEEEEcCCchHH
Q 002281 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDV-HDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL 769 (943)
Q Consensus 691 k~VlIv~K~~~~~~~~a~~l~~~L~~~~g~~V~ve~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIvLGGDGTiL 769 (943)
++++||.-..-.. ....++.+.|.+...+.+++.++- .+.+.+ .... . ...++|+||.+|| |+++
T Consensus 26 ~~~liv~d~~~~~-~~~~~v~~~l~~~~~~~~~~~~~~~~~~v~~---------~~~~-~--~~~~~d~iIaiGG-Gs~~ 91 (339)
T cd08173 26 GRVLVVTGPTTKS-IAGKKVEALLEDEGEVDVVIVEDATYEEVEK---------VESS-A--RDIGADFVIGVGG-GRVI 91 (339)
T ss_pred CeEEEEECCchHH-HHHHHHHHHHHhcCCeEEEEeCCCCHHHHHH---------HHHH-h--hhcCCCEEEEeCC-chHH
Confidence 6788888554322 345667777754322334443321 111110 0000 0 1136899999999 9999
Q ss_pred HHhhhcc-CCCCcEEEEeC
Q 002281 770 HASNLFR-GAVPPVISFNL 787 (943)
Q Consensus 770 ~Aar~~~-~~~~PVLGIN~ 787 (943)
-+++... ...+|++-|.+
T Consensus 92 D~aK~~a~~~~~p~i~iPT 110 (339)
T cd08173 92 DVAKVAAYKLGIPFISVPT 110 (339)
T ss_pred HHHHHHHHhcCCCEEEecC
Confidence 9998764 34689988875
No 165
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=57.48 E-value=16 Score=35.42 Aligned_cols=46 Identities=15% Similarity=0.280 Sum_probs=32.1
Q ss_pred HHHHHHcCCcEEEEcCCCcc-cCcchh-hhhHHhhhcCCcEEEEEecC
Q 002281 280 LKWLMEKGYKTIVDIRAERV-KDNFYE-AAIDDAILSGKVELIKIPVE 325 (943)
Q Consensus 280 La~Lk~lGIKTVIDLRse~~-ee~~~~-a~e~e~~e~~GI~yIhIPV~ 325 (943)
++.|++.||+.|||.|.-.. ..+.+. ......+...||.|+|+|-.
T Consensus 6 ~~~l~~~~i~~lVDVR~~P~S~~~~~~k~~l~~~l~~~gi~Y~~~~~L 53 (122)
T PF04343_consen 6 YDLLKKNGIRVLVDVRLWPRSRKPGFNKEDLASFLEEAGIEYVWLPEL 53 (122)
T ss_pred HHHHHHCCCeEEEEECCCCCCCCCCCCHHHHHHHHHHCCceEeechhh
Confidence 45788889999999887651 111221 23345677889999999964
No 166
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=57.48 E-value=35 Score=30.81 Aligned_cols=27 Identities=22% Similarity=0.207 Sum_probs=17.5
Q ss_pred CCCcEEEeCccCCchHHHHHHHHHHhcCC
Q 002281 346 SKKPLYLHSKEGVWRTYAMVSRWRQYMAR 374 (943)
Q Consensus 346 ~~~PVLVHC~AGKDRTGALvaLlr~~lGv 374 (943)
.+.|++|+|..|. |+-.++..+ ..+|.
T Consensus 60 ~~~~ivv~c~~g~-~s~~~~~~l-~~~G~ 86 (103)
T cd01447 60 EDKPFVFYCASGW-RSALAGKTL-QDMGL 86 (103)
T ss_pred CCCeEEEEcCCCC-cHHHHHHHH-HHcCh
Confidence 4679999999886 765443333 33454
No 167
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=57.08 E-value=9.5 Score=46.47 Aligned_cols=31 Identities=29% Similarity=0.407 Sum_probs=26.3
Q ss_pred CccEEEEEcCCchHHHHhhhcc-----CCCCcEEEE
Q 002281 755 RVDFVACLGGDGVILHASNLFR-----GAVPPVISF 785 (943)
Q Consensus 755 ~~DlVIvLGGDGTiL~Aar~~~-----~~~~PVLGI 785 (943)
+.|.+|++|||||+-.|..+.. +..+||+||
T Consensus 164 ~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIGI 199 (555)
T PRK07085 164 KLDGLVIIGGDDSNTNAAILAEYFAKHGCKTQVIGV 199 (555)
T ss_pred CCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEE
Confidence 7899999999999988877543 357899999
No 168
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=56.77 E-value=15 Score=42.29 Aligned_cols=76 Identities=14% Similarity=0.100 Sum_probs=43.6
Q ss_pred CCEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCcccc-ccCccEEEEEcCCch
Q 002281 690 PRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGV 767 (943)
Q Consensus 690 pk~VlIv~K~~~-~~~~~a~~l~~~L~~~~g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~DlVIvLGGDGT 767 (943)
.++++||..... .......++.+.|.+ .++++.+-.++. ..|.+..+... .+.+ ..++|+||.+|| |+
T Consensus 26 ~kr~livtd~~~~~~~g~~~~v~~~L~~-~gi~~~~f~~v~----~~p~~~~v~~~----~~~~~~~~~D~IIaiGG-GS 95 (383)
T cd08186 26 ISKVLLVTGKSAYKKSGAWDKVEPALDE-HGIEYVLYNKVT----PNPTVDQVDEA----AKLGREFGAQAVIAIGG-GS 95 (383)
T ss_pred CCEEEEEcCccHHhhcChHHHHHHHHHH-cCCeEEEeCCCC----CCCCHHHHHHH----HHHHHHcCCCEEEEeCC-cc
Confidence 378999986553 234445677888854 466655433321 11111111100 0111 246899999999 99
Q ss_pred HHHHhhhc
Q 002281 768 ILHASNLF 775 (943)
Q Consensus 768 iL~Aar~~ 775 (943)
++-+++..
T Consensus 96 ~iD~aK~i 103 (383)
T cd08186 96 PIDSAKSA 103 (383)
T ss_pred HHHHHHHH
Confidence 99988764
No 169
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=56.11 E-value=10 Score=46.75 Aligned_cols=32 Identities=19% Similarity=0.208 Sum_probs=26.3
Q ss_pred cCccEEEEEcCCchHHHHhhhcc-----CCCCcEEEE
Q 002281 754 ERVDFVACLGGDGVILHASNLFR-----GAVPPVISF 785 (943)
Q Consensus 754 ~~~DlVIvLGGDGTiL~Aar~~~-----~~~~PVLGI 785 (943)
-+.|.+|+||||||+-.|+.+.. +..++|+||
T Consensus 172 l~Id~LvvIGGddS~~~A~~Lae~~~~~~~~i~VIGI 208 (610)
T PLN03028 172 LKLDGLVIIGGVTSNTDAAQLAETFAEAKCKTKVVGV 208 (610)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHHHcCCCceEEEe
Confidence 37899999999999988877542 347899998
No 170
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=55.89 E-value=36 Score=40.66 Aligned_cols=76 Identities=8% Similarity=0.205 Sum_probs=46.9
Q ss_pred cCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHH------HHHHHHHH-HhcCCCCcEEEeCccCC
Q 002281 286 KGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTME------QVEKFASL-VSNSSKKPLYLHSKEGV 358 (943)
Q Consensus 286 lGIKTVIDLRse~~ee~~~~a~e~e~~e~~GI~yIhIPV~d~~~Ps~E------~v~aFlel-L~ds~~~PVLVHC~AGK 358 (943)
..+..||++........ .......++|+|+.....-+.. .+..|+.. +.....+++||+|..||
T Consensus 317 ~~~~~vI~~s~~~~~~~---------~~~~~~~~L~l~i~~~K~gs~~LR~~LP~i~~fv~~~L~~~~~~~iLV~C~sGk 387 (451)
T PF04179_consen 317 SEFDCVINCSESPTPKE---------SWPKSPKYLHLPIPSSKKGSRDLRKALPKICSFVRSHLSSDPGKPILVCCDSGK 387 (451)
T ss_pred CCcCEEEEcCCCccccc---------ccCCCceEEeCcCCCCcccHHHHHHHHHHHHHHHHHHhcccCCCcEEEEcCCcc
Confidence 47889999976541111 1235679999999865544432 22333333 22224789999999999
Q ss_pred chHH-HHHHHHHH
Q 002281 359 WRTY-AMVSRWRQ 370 (943)
Q Consensus 359 DRTG-ALvaLlr~ 370 (943)
|..- ++.+++-.
T Consensus 388 DlSVgVaLaILc~ 400 (451)
T PF04179_consen 388 DLSVGVALAILCK 400 (451)
T ss_pred hHHHHHHHHHHHH
Confidence 9987 34444433
No 171
>PRK07411 hypothetical protein; Validated
Probab=55.85 E-value=23 Score=41.23 Aligned_cols=83 Identities=23% Similarity=0.281 Sum_probs=46.5
Q ss_pred CCCHhhHHHHHHcCC--cEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEE
Q 002281 274 QVTEEGLKWLMEKGY--KTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLY 351 (943)
Q Consensus 274 qpT~eDLa~Lk~lGI--KTVIDLRse~~ee~~~~a~e~e~~e~~GI~yIhIPV~d~~~Ps~E~v~aFlelL~ds~~~PVL 351 (943)
.++.+++..+.+.+- -.|||.|+.. + |. .-...| -+++|+.+.... .....+.++ ..+.+++
T Consensus 283 ~Is~~el~~~l~~~~~~~vlIDVR~~~-E---~~-----~ghIpG--AiniP~~~l~~~--~~~~~l~~l---~~d~~IV 346 (390)
T PRK07411 283 EMTVTELKALLDSGADDFVLIDVRNPN-E---YE-----IARIPG--SVLVPLPDIENG--PGVEKVKEL---LNGHRLI 346 (390)
T ss_pred ccCHHHHHHHHhCCCCCeEEEECCCHH-H---hc-----cCcCCC--CEEccHHHhhcc--cchHHHhhc---CCCCeEE
Confidence 577888877665552 3699999865 1 11 011222 345665422111 011222222 2467999
Q ss_pred EeCccCCchHHHHHHHHHHhcCC
Q 002281 352 LHSKEGVWRTYAMVSRWRQYMAR 374 (943)
Q Consensus 352 VHC~AGKDRTGALvaLlr~~lGv 374 (943)
+||..|. |+...+..++. +|.
T Consensus 347 vyC~~G~-RS~~aa~~L~~-~G~ 367 (390)
T PRK07411 347 AHCKMGG-RSAKALGILKE-AGI 367 (390)
T ss_pred EECCCCH-HHHHHHHHHHH-cCC
Confidence 9999998 98866555543 565
No 172
>PRK05670 anthranilate synthase component II; Provisional
Probab=55.69 E-value=23 Score=36.60 Aligned_cols=75 Identities=13% Similarity=0.189 Sum_probs=42.7
Q ss_pred EEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccccccCccEEEEEcCCchHHH--
Q 002281 693 VLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILH-- 770 (943)
Q Consensus 693 VlIv~K~~~~~~~~a~~l~~~L~~~~g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIvLGGDGTiL~-- 770 (943)
||||--.. +....+++||.+ .|+++.+-+...... .+.+. .++|.||+.||-|+.-.
T Consensus 2 iliid~~d----~f~~~i~~~l~~-~g~~~~v~~~~~~~~--------------~~~~~--~~~dglIlsgGpg~~~d~~ 60 (189)
T PRK05670 2 ILLIDNYD----SFTYNLVQYLGE-LGAEVVVYRNDEITL--------------EEIEA--LNPDAIVLSPGPGTPAEAG 60 (189)
T ss_pred EEEEECCC----chHHHHHHHHHH-CCCcEEEEECCCCCH--------------HHHHh--CCCCEEEEcCCCCChHHcc
Confidence 45554443 335667888865 477766543311000 00111 23799999999998622
Q ss_pred ----HhhhccCCCCcEEEEeCCC
Q 002281 771 ----ASNLFRGAVPPVISFNLGS 789 (943)
Q Consensus 771 ----Aar~~~~~~~PVLGIN~Gs 789 (943)
..+.+ ....|||||-+|.
T Consensus 61 ~~~~~l~~~-~~~~PvLGIClG~ 82 (189)
T PRK05670 61 ISLELIREF-AGKVPILGVCLGH 82 (189)
T ss_pred hHHHHHHHh-cCCCCEEEECHHH
Confidence 22222 2458999999984
No 173
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=55.68 E-value=19 Score=41.27 Aligned_cols=76 Identities=17% Similarity=0.201 Sum_probs=42.4
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccc-cccCccEEEEEcCCchH
Q 002281 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVI 768 (943)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~~l~~~L~~~~g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~DlVIvLGGDGTi 768 (943)
.++++||.-..-.......++.+.|.+ .++++.+-.++. ..|....+... .+. ...++|+||.||| |..
T Consensus 26 ~~~~lvvt~~~~~~~g~~~~v~~~L~~-~g~~~~~~~~v~----~~p~~~~v~~~----~~~~~~~~~d~IIaiGG-GS~ 95 (374)
T cd08189 26 VKKVLIVTDKGLVKLGLLDKVLEALEG-AGIEYAVYDGVP----PDPTIENVEAG----LALYRENGCDAILAVGG-GSV 95 (374)
T ss_pred CCeEEEEeCcchhhcccHHHHHHHHHh-cCCeEEEeCCCC----CCcCHHHHHHH----HHHHHhcCCCEEEEeCC-ccH
Confidence 378999986553222245667777754 466665433321 11111111000 000 1247899999999 999
Q ss_pred HHHhhhc
Q 002281 769 LHASNLF 775 (943)
Q Consensus 769 L~Aar~~ 775 (943)
+-+++..
T Consensus 96 ~D~aK~i 102 (374)
T cd08189 96 IDCAKAI 102 (374)
T ss_pred HHHHHHH
Confidence 9988754
No 174
>cd08195 DHQS Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway, which involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds, is found in bacteria, microbial eukaryotes, and plants, but not in mammals. Therefore, enzymes of this pathway are attractive targets for the development of non-toxic antimicrobial compounds, herbicides and anti-parasitic agents. The activity of DHQS requires nicotinamide adenine dinucleotide (NAD) as cofactor. A single active site in DHQS catalyzes five sequential reactions involving alcohol oxidation, phosphate elimination, carbonyl reduction, ring opening, and intramolecular aldol
Probab=55.42 E-value=22 Score=40.33 Aligned_cols=91 Identities=14% Similarity=0.160 Sum_probs=47.7
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCC--eEEEEcCChhhhhhcCCCCccceeeeccCccccccCccEEEEEcCCch
Q 002281 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEK--MNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGV 767 (943)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~~l~~~L~~~~g--~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIvLGGDGT 767 (943)
.++++||.-.+-.. ....++.+.|.+. + ..+++-+... ..+.+..+......-.+.-..+.|+||.+|| |+
T Consensus 24 ~~~~livtd~~~~~-~~~~~l~~~L~~~-g~~~~~~~~~~~e----~~~~~~~v~~~~~~~~~~~~~r~d~IIaiGG-Gs 96 (345)
T cd08195 24 GSKILIVTDENVAP-LYLEKLKAALEAA-GFEVEVIVIPAGE----ASKSLETLEKLYDALLEAGLDRKSLIIALGG-GV 96 (345)
T ss_pred CCeEEEEECCchHH-HHHHHHHHHHHhc-CCceEEEEeCCCC----CcCCHHHHHHHHHHHHHcCCCCCCeEEEECC-hH
Confidence 47899998655322 3456777777543 4 3333322110 0111111100000000011134599999999 99
Q ss_pred HHHHhhhcc---CCCCcEEEEeC
Q 002281 768 ILHASNLFR---GAVPPVISFNL 787 (943)
Q Consensus 768 iL~Aar~~~---~~~~PVLGIN~ 787 (943)
++-++.... ...+|++-|.+
T Consensus 97 v~D~ak~vA~~~~rgip~i~VPT 119 (345)
T cd08195 97 VGDLAGFVAATYMRGIDFIQIPT 119 (345)
T ss_pred HHhHHHHHHHHHhcCCCeEEcch
Confidence 999888754 45678877764
No 175
>PLN02834 3-dehydroquinate synthase
Probab=55.30 E-value=17 Score=43.04 Aligned_cols=91 Identities=18% Similarity=0.160 Sum_probs=46.0
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEE----cCChhhhhhcCCCCccceeeeccCccccccCccEEEEEcCC
Q 002281 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILV----EPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGD 765 (943)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~~l~~~L~~~~g~~V~v----e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIvLGGD 765 (943)
.++++||.-..-... ...++.+.|.+ .|+++.+ -++... .+....+......-.+.-.++.|+||.|||
T Consensus 100 g~rvlIVtD~~v~~~-~~~~v~~~L~~-~g~~~~v~~~v~~~gE~----~ksl~~v~~~~~~l~~~~~dr~~~VIAiGG- 172 (433)
T PLN02834 100 GKRVLVVTNETVAPL-YLEKVVEALTA-KGPELTVESVILPDGEK----YKDMETLMKVFDKALESRLDRRCTFVALGG- 172 (433)
T ss_pred CCEEEEEECccHHHH-HHHHHHHHHHh-cCCceEEEEEEecCCcC----CCCHHHHHHHHHHHHhcCCCcCcEEEEECC-
Confidence 478999985553222 56678888854 3543322 111100 011100000000000000123459999999
Q ss_pred chHHHHhhhcc---CCCCcEEEEeC
Q 002281 766 GVILHASNLFR---GAVPPVISFNL 787 (943)
Q Consensus 766 GTiL~Aar~~~---~~~~PVLGIN~ 787 (943)
|+++-++.... ...+|++-|.+
T Consensus 173 Gsv~D~ak~~A~~y~rgiplI~VPT 197 (433)
T PLN02834 173 GVIGDMCGFAAASYQRGVNFVQIPT 197 (433)
T ss_pred hHHHHHHHHHHHHhcCCCCEEEECC
Confidence 99999887532 34678776655
No 176
>KOG1089 consensus Myotubularin-related phosphatidylinositol 3-phosphate 3-phosphatase MTM6 [General function prediction only]
Probab=55.26 E-value=19 Score=43.93 Aligned_cols=29 Identities=21% Similarity=0.215 Sum_probs=23.9
Q ss_pred CCCCcEEEeCccCCchHHHHHHHHHHhcC
Q 002281 345 SSKKPLYLHSKEGVWRTYAMVSRWRQYMA 373 (943)
Q Consensus 345 s~~~PVLVHC~AGKDRTGALvaLlr~~lG 373 (943)
..+-+|||||.-|.|||..+..|...++.
T Consensus 342 ~~~~sVlvhcsdGwDrT~qV~SLaQllLD 370 (573)
T KOG1089|consen 342 SEGASVLVHCSDGWDRTCQVSSLAQLLLD 370 (573)
T ss_pred hCCCeEEEEccCCcchhHHHHHHHHHHhC
Confidence 45579999999999999988888766443
No 177
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=54.79 E-value=11 Score=45.96 Aligned_cols=44 Identities=30% Similarity=0.359 Sum_probs=32.7
Q ss_pred cCccEEEEEcCCchHHHHhhhcc-----CCCCcEEEEeC-------C-----CCcccCCCC
Q 002281 754 ERVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL-------G-----SLGFLTSHP 797 (943)
Q Consensus 754 ~~~DlVIvLGGDGTiL~Aar~~~-----~~~~PVLGIN~-------G-----sLGFLt~~~ 797 (943)
-+.|.+|++|||||+-.|+.+.. +..++|+||-- | ++||=|..+
T Consensus 165 ~~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~t~id~s~GFdTA~k 225 (550)
T cd00765 165 LDLDALVVIGGDDSNTNAALLAENFRSKGLKTRVIGVPKTIDGDLKNKEIETSFGFDTATK 225 (550)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeeeecCCCCCCCCCCCcCHHHHHH
Confidence 36899999999999988877543 34589999942 3 667766543
No 178
>PRK06186 hypothetical protein; Validated
Probab=54.66 E-value=27 Score=38.16 Aligned_cols=36 Identities=22% Similarity=0.211 Sum_probs=30.6
Q ss_pred ccCccEEEEEcCCch-----HHHHhhhccCCCCcEEEEeCC
Q 002281 753 HERVDFVACLGGDGV-----ILHASNLFRGAVPPVISFNLG 788 (943)
Q Consensus 753 ~~~~DlVIvLGGDGT-----iL~Aar~~~~~~~PVLGIN~G 788 (943)
.+++|-|++.||=|. .+.|++.....++|+|||-+|
T Consensus 51 l~~~dgilvpgGfg~rg~~Gki~ai~~Are~~iP~LGIClG 91 (229)
T PRK06186 51 LAGFDGIWCVPGSPYRNDDGALTAIRFARENGIPFLGTCGG 91 (229)
T ss_pred HhhCCeeEeCCCCCcccHhHHHHHHHHHHHcCCCeEeechh
Confidence 457899999999664 677888888889999999998
No 179
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=54.42 E-value=19 Score=41.11 Aligned_cols=73 Identities=23% Similarity=0.260 Sum_probs=40.4
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCcccc-ccCccEEEEEcCCchH
Q 002281 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVI 768 (943)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~~l~~~L~~~~g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~DlVIvLGGDGTi 768 (943)
.++++||....-. ....+.+.|.+ .++++.+-..+. ..|.+..+... .+.. ..++|+||.||| |++
T Consensus 23 ~~~~livtd~~~~---~~~~~~~~l~~-~~~~~~~~~~~~----~~p~~~~v~~~----~~~~~~~~~D~IIavGG-Gs~ 89 (367)
T cd08182 23 GKRVLLVTGPRSA---IASGLTDILKP-LGTLVVVFDDVQ----PNPDLEDLAAG----IRLLREFGPDAVLAVGG-GSV 89 (367)
T ss_pred CCeEEEEeCchHH---HHHHHHHHHHH-cCCeEEEEcCcC----CCcCHHHHHHH----HHHHHhcCcCEEEEeCC-cHH
Confidence 3789999765543 33456666653 356555433221 11111111100 0011 246899999999 999
Q ss_pred HHHhhhc
Q 002281 769 LHASNLF 775 (943)
Q Consensus 769 L~Aar~~ 775 (943)
+-+++..
T Consensus 90 ~D~aK~i 96 (367)
T cd08182 90 LDTAKAL 96 (367)
T ss_pred HHHHHHH
Confidence 9988864
No 180
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=54.21 E-value=34 Score=39.39 Aligned_cols=78 Identities=13% Similarity=0.180 Sum_probs=43.0
Q ss_pred CCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeC
Q 002281 275 VTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHS 354 (943)
Q Consensus 275 pT~eDLa~Lk~lGIKTVIDLRse~~ee~~~~a~e~e~~e~~GI~yIhIPV~d~~~Ps~E~v~aFlelL~ds~~~PVLVHC 354 (943)
++.+++..+.+.+ -.|||.|+++ + |. .-...| -+++|.. .+......+....+.+++++|
T Consensus 5 is~~el~~~l~~~-~~ivDvR~~~-e---~~-----~ghIpg--Ai~ip~~--------~l~~~~~~~~~~~~~~IvvyC 64 (376)
T PRK08762 5 ISPAEARARAAQG-AVLIDVREAH-E---RA-----SGQAEG--ALRIPRG--------FLELRIETHLPDRDREIVLIC 64 (376)
T ss_pred eCHHHHHHHHhCC-CEEEECCCHH-H---Hh-----CCcCCC--CEECCHH--------HHHHHHhhhcCCCCCeEEEEc
Confidence 5677777776667 4799999864 1 11 001122 2444432 233333222123578999999
Q ss_pred ccCCchHHHHHHHHHHhcCC
Q 002281 355 KEGVWRTYAMVSRWRQYMAR 374 (943)
Q Consensus 355 ~AGKDRTGALvaLlr~~lGv 374 (943)
..|. |+..++.+++ ..|.
T Consensus 65 ~~G~-rs~~aa~~L~-~~G~ 82 (376)
T PRK08762 65 ASGT-RSAHAAATLR-ELGY 82 (376)
T ss_pred CCCc-HHHHHHHHHH-HcCC
Confidence 9987 7765444443 2454
No 181
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=54.06 E-value=14 Score=42.96 Aligned_cols=76 Identities=16% Similarity=0.128 Sum_probs=43.2
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccc-cccCccEEEEEcCCchH
Q 002281 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVI 768 (943)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~~l~~~L~~~~g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~DlVIvLGGDGTi 768 (943)
.++++|+....-.......++.+.|.+ .|+++.+...+.. .|....+... .+. -..++|+||.||| |..
T Consensus 49 ~~~~lvv~~~~~~~~g~~~~v~~~L~~-~gi~~~~~~~v~~----~P~~~~v~~~----~~~~r~~~~D~IiavGG-GS~ 118 (395)
T PRK15454 49 LKHLFVMADSFLHQAGMTAGLTRSLAV-KGIAMTLWPCPVG----EPCITDVCAA----VAQLRESGCDGVIAFGG-GSV 118 (395)
T ss_pred CCEEEEEcCcchhhCccHHHHHHHHHH-cCCeEEEECCCCC----CcCHHHHHHH----HHHHHhcCcCEEEEeCC-hHH
Confidence 478888876442223445678888854 5777655433211 1111101000 000 1257999999999 999
Q ss_pred HHHhhhc
Q 002281 769 LHASNLF 775 (943)
Q Consensus 769 L~Aar~~ 775 (943)
+-+++..
T Consensus 119 iD~AKai 125 (395)
T PRK15454 119 LDAAKAV 125 (395)
T ss_pred HHHHHHH
Confidence 9998764
No 182
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=53.90 E-value=31 Score=38.87 Aligned_cols=43 Identities=14% Similarity=0.141 Sum_probs=26.9
Q ss_pred CCHHHHHHHHHHHhcCCCCcEEEeCccCCchHHHHHHHHHHhcCC
Q 002281 330 PTMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMAR 374 (943)
Q Consensus 330 Ps~E~v~aFlelL~ds~~~PVLVHC~AGKDRTGALvaLlr~~lGv 374 (943)
.+.+.+++++.-..-..+.||+++|..|. |+..++..+. .+|.
T Consensus 252 ~~~~el~~~~~~~gi~~~~~iv~yC~sG~-~A~~~~~~L~-~~G~ 294 (320)
T PLN02723 252 LPAEELKKRFEQEGISLDSPIVASCGTGV-TACILALGLH-RLGK 294 (320)
T ss_pred CCHHHHHHHHHhcCCCCCCCEEEECCcHH-HHHHHHHHHH-HcCC
Confidence 45566665554321135679999999987 7765555443 4665
No 183
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=53.63 E-value=10 Score=49.95 Aligned_cols=44 Identities=16% Similarity=0.221 Sum_probs=33.7
Q ss_pred cCccEEEEEcCCchHHHHhhhccC----------CCCcEEEEeC-------C-----CCcccCCCC
Q 002281 754 ERVDFVACLGGDGVILHASNLFRG----------AVPPVISFNL-------G-----SLGFLTSHP 797 (943)
Q Consensus 754 ~~~DlVIvLGGDGTiL~Aar~~~~----------~~~PVLGIN~-------G-----sLGFLt~~~ 797 (943)
.+.|.+|+||||||+-.|+.+... ..+||+||-- | ++||-|..+
T Consensus 799 ~~Id~LVvIGGDgS~t~A~~Lae~~~~~~~~~~~~gi~VIgVPkTIDNDl~~~~te~TiGFDTA~~ 864 (1328)
T PTZ00468 799 FNMRAIAIVGNSEAATFGASLSEQLICMSLNGMKSEIPVVFVPVCLENSISHQMIETCIGFDSVTK 864 (1328)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHHHhhhccccccCCCcEEEeCccccCCCCCCCccccccHHhHHH
Confidence 478999999999999988886432 3689999943 2 678877654
No 184
>cd08183 Fe-ADH2 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is a member of the iron-activated alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown. They are mainly found in bacteria.
Probab=53.41 E-value=23 Score=40.65 Aligned_cols=71 Identities=20% Similarity=0.297 Sum_probs=41.4
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccc-cccCccEEEEEcCCchHH
Q 002281 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVIL 769 (943)
Q Consensus 691 k~VlIv~K~~~~~~~~a~~l~~~L~~~~g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~DlVIvLGGDGTiL 769 (943)
++++||....-. .+.++...|.+ .++++.+.. +. ..|....+... ... -..++|+||.||| |+++
T Consensus 23 ~r~livtd~~~~---~~~~v~~~L~~-~g~~~~~~~-~~----~~p~~~~v~~~----~~~~~~~~~D~IIaiGG-GS~~ 88 (374)
T cd08183 23 RRVLLVTGASSL---RAAWLIEALRA-AGIEVTHVV-VA----GEPSVELVDAA----VAEARNAGCDVVIAIGG-GSVI 88 (374)
T ss_pred CcEEEEECCchH---HHHHHHHHHHH-cCCeEEEec-CC----CCcCHHHHHHH----HHHHHhcCCCEEEEecC-chHH
Confidence 789999876543 56678888854 466654422 11 11111101000 001 1247999999999 9999
Q ss_pred HHhhhc
Q 002281 770 HASNLF 775 (943)
Q Consensus 770 ~Aar~~ 775 (943)
-+++..
T Consensus 89 D~aK~i 94 (374)
T cd08183 89 DAGKAI 94 (374)
T ss_pred HHHHHH
Confidence 988754
No 185
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=53.00 E-value=11 Score=47.37 Aligned_cols=54 Identities=17% Similarity=0.082 Sum_probs=37.5
Q ss_pred cCccEEEEEcCCchHHHHhhhcc------CCCCcEEEEeC----------CCCcccCCCCchhHHHHHHHHH
Q 002281 754 ERVDFVACLGGDGVILHASNLFR------GAVPPVISFNL----------GSLGFLTSHPFEDYRQDLRQVI 809 (943)
Q Consensus 754 ~~~DlVIvLGGDGTiL~Aar~~~------~~~~PVLGIN~----------GsLGFLt~~~~ed~~~~L~~ll 809 (943)
-++|.+|++|||||+-.|..+.. ...+||+||-- =++||-|..+. +.++++++.
T Consensus 477 ~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~~i~vvgIPkTIDNDi~gtd~t~GfdTA~~~--~~~~id~i~ 546 (745)
T TIGR02478 477 HKIDGLLIIGGFEAFEALLQLEQAREKYPAFRIPMVVIPATISNNVPGTEYSLGSDTALNE--ITEYCDNIK 546 (745)
T ss_pred cCCCEEEEeCChHHHHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCccCCCHHHHHHH--HHHHHHHHH
Confidence 36999999999999987766543 24689999843 27888886542 334444443
No 186
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=52.17 E-value=21 Score=40.25 Aligned_cols=87 Identities=22% Similarity=0.277 Sum_probs=46.7
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccc-cccCccEEEEEcCCchH
Q 002281 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVI 768 (943)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~~l~~~L~~~~g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~DlVIvLGGDGTi 768 (943)
.++++||.-..-.......++.+.|.+. +++.+-.++. ..|....+... .+. ...++|+||.+|| |.+
T Consensus 22 ~~~~lvv~~~~~~~~g~~~~v~~~l~~~--~~~~~~~~v~----~~p~~~~v~~~----~~~~~~~~~d~IiaiGG-Gs~ 90 (332)
T cd08180 22 NKRVLIVTDPFMVKSGMLDKVTDHLDSS--IEVEIFSDVV----PDPPIEVVAKG----IKKFLDFKPDIVIALGG-GSA 90 (332)
T ss_pred CCeEEEEeCchhhhCccHHHHHHHHHhc--CcEEEeCCCC----CCcCHHHHHHH----HHHHHhcCCCEEEEECC-chH
Confidence 3788988754321122456777777532 4443322221 11111111000 000 1246899999999 999
Q ss_pred HHHhhhc----c----CCCCcEEEEeC
Q 002281 769 LHASNLF----R----GAVPPVISFNL 787 (943)
Q Consensus 769 L~Aar~~----~----~~~~PVLGIN~ 787 (943)
+-+++.+ . ...+|++.|.+
T Consensus 91 ~D~aKa~a~~~~~~~~~~~~p~i~VPT 117 (332)
T cd08180 91 IDAAKAIIYFAKKLGKKKKPLFIAIPT 117 (332)
T ss_pred HHHHHHHHHHHhCCCCCCCCCEEEeCC
Confidence 9988842 1 22479998875
No 187
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=51.99 E-value=12 Score=47.12 Aligned_cols=53 Identities=19% Similarity=0.123 Sum_probs=37.5
Q ss_pred cCccEEEEEcCCchHHHHhhhcc------CCCCcEEEEeC-------C---CCcccCCCCchhHHHHHHHH
Q 002281 754 ERVDFVACLGGDGVILHASNLFR------GAVPPVISFNL-------G---SLGFLTSHPFEDYRQDLRQV 808 (943)
Q Consensus 754 ~~~DlVIvLGGDGTiL~Aar~~~------~~~~PVLGIN~-------G---sLGFLt~~~~ed~~~~L~~l 808 (943)
.++|.+|+||||||+-.+..+.. ...+||+||-- | ++||-|..+ .+-++++++
T Consensus 477 ~~Id~LivIGGdgs~~~a~~L~~~~~~y~~~~i~vVgIPkTIDNDv~gTd~siGfdTAln--~~~~~id~i 545 (762)
T cd00764 477 YGIDGLIIVGGFEAYKGLLQLREAREQYEEFCIPMVLIPATVSNNVPGTDFSLGSDTALN--ALMKYCDRI 545 (762)
T ss_pred cCCCEEEEECChhHHHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCcCCCCHHHHHH--HHHHHHHHH
Confidence 46999999999999987765542 25699999943 3 788887654 333444444
No 188
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=50.91 E-value=42 Score=39.02 Aligned_cols=80 Identities=18% Similarity=0.272 Sum_probs=45.2
Q ss_pred CCCHhhHHHHHHcCC-cEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEE
Q 002281 274 QVTEEGLKWLMEKGY-KTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYL 352 (943)
Q Consensus 274 qpT~eDLa~Lk~lGI-KTVIDLRse~~ee~~~~a~e~e~~e~~GI~yIhIPV~d~~~Ps~E~v~aFlelL~ds~~~PVLV 352 (943)
.++++++..+.+.+- -.|||+|+.. + +. .....| -+++|+.... ..+.+ ..+ ..++|+++
T Consensus 288 ~Is~~el~~~l~~~~~~~lIDvR~~~-e---f~-----~ghIpG--Ainip~~~l~--~~~~~----~~l--~~d~~iVv 348 (392)
T PRK07878 288 TITPRELKEWLDSGKKIALIDVREPV-E---WD-----IVHIPG--AQLIPKSEIL--SGEAL----AKL--PQDRTIVL 348 (392)
T ss_pred ccCHHHHHHHHhCCCCeEEEECCCHH-H---Hh-----cCCCCC--CEEcChHHhc--chhHH----hhC--CCCCcEEE
Confidence 578888887776653 3699999875 1 11 011223 3456654211 11111 122 35679999
Q ss_pred eCccCCchHHHHHHHHHHhcCC
Q 002281 353 HSKEGVWRTYAMVSRWRQYMAR 374 (943)
Q Consensus 353 HC~AGKDRTGALvaLlr~~lGv 374 (943)
+|..|. |+...+..++. .|.
T Consensus 349 yC~~G~-rS~~aa~~L~~-~G~ 368 (392)
T PRK07878 349 YCKTGV-RSAEALAALKK-AGF 368 (392)
T ss_pred EcCCCh-HHHHHHHHHHH-cCC
Confidence 999997 87655444433 454
No 189
>cd08190 HOT Hydroxyacid-oxoacid transhydrogenase (HOT) involved in gamma-hydroxybutyrate metabolism. Hydroxyacid-oxoacid transhydrogenase (HOT), also known as D-2-hydroxyglutarate transhydrogenase. It catalyzes the conversion of gamma-hydroxybutyrate (GHB) to succinic semialdehyde (SSA), coupled to the stoichiometric conversion of alpha-ketoglutarate to D-2-hydroxyglutarate in gamma-Hydroxybutyrate catabolism. Unlike many other alcohols, which are oxidized by NAD-linked dehydrogenases, gamma-hydroxybutyrate is metabolized to succinate semialdehyde by hydroxyacid-oxoacid transhydrogenase which does not require free NAD or NADP, but instead using alpha -ketoglutarate as an acceptor, converting it to d-2-hydroxyglutarate. Alpha-ketoglutarate serves as an intermediate acceptor to regenerate NAD(P) required for the oxidation of GHB. HOT also catalyzes the reversible oxidation of a hydroxyacid obligatorily coupled to the reduction of an oxoacid, and requires no cofactor. In mammals, the HOT
Probab=50.29 E-value=17 Score=42.48 Aligned_cols=75 Identities=21% Similarity=0.224 Sum_probs=42.4
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccc-cccCccEEEEEcCCchHH
Q 002281 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVIL 769 (943)
Q Consensus 691 k~VlIv~K~~~~~~~~a~~l~~~L~~~~g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~DlVIvLGGDGTiL 769 (943)
++++||.-..-.....+.++.+.|.+ .|+++.+-.++. ..|....+... .+. ...++|+||.||| |.++
T Consensus 24 ~~vlivt~~~~~~~g~~~~v~~~L~~-~gi~~~~f~~v~----~~p~~~~v~~~----~~~~~~~~~D~IIaiGG-GSvi 93 (414)
T cd08190 24 RRVCLVTDPNLAQLPPVKVVLDSLEA-AGINFEVYDDVR----VEPTDESFKDA----IAFAKKGQFDAFVAVGG-GSVI 93 (414)
T ss_pred CeEEEEECcchhhcchHHHHHHHHHH-cCCcEEEeCCCC----CCcCHHHHHHH----HHHHHhcCCCEEEEeCC-ccHH
Confidence 78999987663333356778888854 466655422221 01111101000 001 1246899999999 9999
Q ss_pred HHhhhc
Q 002281 770 HASNLF 775 (943)
Q Consensus 770 ~Aar~~ 775 (943)
-+++..
T Consensus 94 D~AKai 99 (414)
T cd08190 94 DTAKAA 99 (414)
T ss_pred HHHHHH
Confidence 887653
No 190
>cd08549 G1PDH_related Glycerol-1-phosphate_dehydrogenase and related proteins. Bacterial and archeal glycerol-1-phosphate dehydrogenase-like oxidoreductases. The proteins have similarity with glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. It also contains archaeal Sn-glycerol-1-phosphate dehydrogenase (Gro1PDH) that plays an important role in the formation of the enantiomeric configuration of the glycerophosphate backbone (sn-glycerol-1-phosphate) of archaeal ether lipids.
Probab=50.22 E-value=27 Score=39.45 Aligned_cols=86 Identities=19% Similarity=0.229 Sum_probs=49.4
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEE-cCChhhhhhcCCCCccceeeeccCccccccCccEEEEEcCCchHH
Q 002281 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILV-EPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL 769 (943)
Q Consensus 691 k~VlIv~K~~~~~~~~a~~l~~~L~~~~g~~V~v-e~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIvLGGDGTiL 769 (943)
++++||.-..-... ...++.+.|.+ .++++.+ ..+.. ..|....+... ...+.+++|+||.||| |+++
T Consensus 25 ~kvlivtd~~~~~~-~~~~i~~~L~~-~~~~~~i~~~~~~----~~p~~~~v~~~----~~~~~~~~d~IIaiGG-Gsv~ 93 (332)
T cd08549 25 SKIMIVCGNNTYKV-AGKEIIERLES-NNFTKEVLERDSL----LIPDEYELGEV----LIKLDKDTEFLLGIGS-GTII 93 (332)
T ss_pred CcEEEEECCcHHHH-HHHHHHHHHHH-cCCeEEEEecCCC----CCCCHHHHHHH----HHHhhcCCCEEEEECC-cHHH
Confidence 67899987664222 23677777754 3554433 11211 01111111110 0112237899999999 9999
Q ss_pred HHhhhcc-CCCCcEEEEeC
Q 002281 770 HASNLFR-GAVPPVISFNL 787 (943)
Q Consensus 770 ~Aar~~~-~~~~PVLGIN~ 787 (943)
-+++... ...+|++-|.+
T Consensus 94 D~aK~iA~~~gip~I~VPT 112 (332)
T cd08549 94 DLVKFVSFKVGKPFISVPT 112 (332)
T ss_pred HHHHHHHHHcCCCEEEeCC
Confidence 9998764 24679988875
No 191
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=50.14 E-value=27 Score=39.94 Aligned_cols=85 Identities=15% Similarity=0.114 Sum_probs=49.6
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCcccc-ccCccEEEEEcCCchHH
Q 002281 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVIL 769 (943)
Q Consensus 691 k~VlIv~K~~~~~~~~a~~l~~~L~~~~g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~DlVIvLGGDGTiL 769 (943)
++++||....-.. ....++.+.|.+ .++++.+. .+. ..+....+... .+.. ..++|+||.||| |+++
T Consensus 30 ~~~livtd~~~~~-~~~~~v~~~l~~-~~~~~~~~-~~~----~ep~~~~v~~~----~~~~~~~~~d~IIavGG-Gsv~ 97 (366)
T PRK09423 30 KRALVIADEFVLG-IVGDRVEASLKE-AGLTVVFE-VFN----GECSDNEIDRL----VAIAEENGCDVVIGIGG-GKTL 97 (366)
T ss_pred CEEEEEEChhHHH-HHHHHHHHHHHh-CCCeEEEE-EeC----CCCCHHHHHHH----HHHHHhcCCCEEEEecC-hHHH
Confidence 7899998544321 255778888854 46655322 111 11111111100 0011 236899999999 9999
Q ss_pred HHhhhcc-CCCCcEEEEeC
Q 002281 770 HASNLFR-GAVPPVISFNL 787 (943)
Q Consensus 770 ~Aar~~~-~~~~PVLGIN~ 787 (943)
-+++... ...+|++.|-+
T Consensus 98 D~aK~iA~~~~~p~i~IPT 116 (366)
T PRK09423 98 DTAKAVADYLGVPVVIVPT 116 (366)
T ss_pred HHHHHHHHHcCCCEEEeCC
Confidence 9999764 24689998875
No 192
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=50.02 E-value=64 Score=30.34 Aligned_cols=75 Identities=20% Similarity=0.165 Sum_probs=38.3
Q ss_pred CCHhhHHHHHHcC------CcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCC
Q 002281 275 VTEEGLKWLMEKG------YKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKK 348 (943)
Q Consensus 275 pT~eDLa~Lk~lG------IKTVIDLRse~~ee~~~~a~e~e~~e~~GI~yIhIPV~d~~~Ps~E~v~aFlelL~ds~~~ 348 (943)
++++++..+.+.+ =-.|||.|..+ +. . ....| -+++|+.... +.+......+......
T Consensus 4 is~~el~~~l~~~~~~~~~~~~iiDvR~~e-----f~--~---ghipg--Ai~ip~~~~~----~~~~~~~~~~~~~~~~ 67 (113)
T cd01443 4 ISPEELVALLENSDSNAGKDFVVVDLRRDD-----YE--G---GHIKG--SINLPAQSCY----QTLPQVYALFSLAGVK 67 (113)
T ss_pred cCHHHHHHHHhCCccccCCcEEEEECCchh-----cC--C---CcccC--ceecchhHHH----HHHHHHHHHhhhcCCC
Confidence 5677777776665 23689999752 11 0 11122 3566765211 1111122212123356
Q ss_pred cEEEeCccCCchHHHHH
Q 002281 349 PLYLHSKEGVWRTYAMV 365 (943)
Q Consensus 349 PVLVHC~AGKDRTGALv 365 (943)
+|++||..|-.|+-.++
T Consensus 68 ~iv~~C~~~g~rs~~a~ 84 (113)
T cd01443 68 LAIFYCGSSQGRGPRAA 84 (113)
T ss_pred EEEEECCCCCcccHHHH
Confidence 89999997533755433
No 193
>KOG1115 consensus Ceramide kinase [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=49.98 E-value=15 Score=43.16 Aligned_cols=73 Identities=18% Similarity=0.290 Sum_probs=41.6
Q ss_pred ccCCCEEEEEecCCh---hHHHHHHHHHHHHh-cCCCeEEEEcCChhh---hhhcCCCCccceeeeccCccccccCccEE
Q 002281 687 KTTPRTVLVLKKPGP---ALMEEAKEVASFLY-HQEKMNILVEPDVHD---IFARIPGFGFVQTFYLQDTSDLHERVDFV 759 (943)
Q Consensus 687 ~~~pk~VlIv~K~~~---~~~~~a~~l~~~L~-~~~g~~V~ve~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~DlV 759 (943)
..+||+++|+-.|.. +.....+.+..++. ..-...|+|.+.... .+.+++ .++ ...+|-|
T Consensus 155 ~~RPknllvFinPfgGkG~g~ki~e~V~~~F~la~v~tkvivTErAnhA~d~~~ei~------------~~~-~~~yDGi 221 (516)
T KOG1115|consen 155 VERPKNLLVFINPFGGKGNGSKIWETVSKIFILAKVNTKVIVTERANHAFDVMAEIQ------------NKE-LHTYDGI 221 (516)
T ss_pred hcCCccEEEEEcCCCCCCcccchhhhhhhhEEeeecceeEEEEccccchhhhhhhCC------------Hhh-hhhcccE
Confidence 347999998877763 22333444444331 124566777665432 222221 122 3468999
Q ss_pred EEEcCCchHHHHh
Q 002281 760 ACLGGDGVILHAS 772 (943)
Q Consensus 760 IvLGGDGTiL~Aa 772 (943)
|++||||-|=...
T Consensus 222 v~VGGDG~FnEiL 234 (516)
T KOG1115|consen 222 VAVGGDGFFNEIL 234 (516)
T ss_pred EEecCchhHHHHH
Confidence 9999999764433
No 194
>PRK06490 glutamine amidotransferase; Provisional
Probab=49.87 E-value=31 Score=37.48 Aligned_cols=79 Identities=15% Similarity=0.138 Sum_probs=44.2
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccccccCccEEEEEcCCchH--
Q 002281 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVI-- 768 (943)
Q Consensus 691 k~VlIv~K~~~~~~~~a~~l~~~L~~~~g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIvLGGDGTi-- 768 (943)
.+|++|.+...+... .+.+||.+ .|.++-+-....+ +...+-..++|.+|+.||-+++
T Consensus 8 ~~vlvi~h~~~~~~g---~l~~~l~~-~g~~~~v~~~~~~----------------~~~p~~l~~~dgvii~Ggp~~~~d 67 (239)
T PRK06490 8 RPVLIVLHQERSTPG---RVGQLLQE-RGYPLDIRRPRLG----------------DPLPDTLEDHAGAVIFGGPMSAND 67 (239)
T ss_pred ceEEEEecCCCCCCh---HHHHHHHH-CCCceEEEeccCC----------------CCCCCcccccCEEEEECCCCCCCC
Confidence 478999887754432 25556643 3554433211000 0001113458999999998753
Q ss_pred ----HH----HhhhccCCCCcEEEEeCCC
Q 002281 769 ----LH----ASNLFRGAVPPVISFNLGS 789 (943)
Q Consensus 769 ----L~----Aar~~~~~~~PVLGIN~Gs 789 (943)
+. ..+.+....+|||||-+|+
T Consensus 68 ~~~wi~~~~~~i~~~~~~~~PvLGIC~G~ 96 (239)
T PRK06490 68 PDDFIRREIDWISVPLKENKPFLGICLGA 96 (239)
T ss_pred CchHHHHHHHHHHHHHHCCCCEEEECHhH
Confidence 22 2222334578999999985
No 195
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=49.53 E-value=79 Score=37.02 Aligned_cols=60 Identities=23% Similarity=0.276 Sum_probs=42.7
Q ss_pred ccccccCccEEEEEcCCchHHHHhhhccCCCCcEEEEeCC-------------CCcccCC---CCchhHHHHHHHHHcCC
Q 002281 749 TSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLG-------------SLGFLTS---HPFEDYRQDLRQVIYGN 812 (943)
Q Consensus 749 ~~~l~~~~DlVIvLGGDGTiL~Aar~~~~~~~PVLGIN~G-------------sLGFLt~---~~~ed~~~~L~~ll~G~ 812 (943)
..++...+|++|+-||=||+..+.+. .+|++.+-.+ ..|.... .+.+.+.+++++++...
T Consensus 294 ~~~~l~~ad~vI~hGG~gtt~eaL~~----gvP~vv~P~~~DQ~~nA~rve~~G~G~~l~~~~l~~~~l~~av~~vL~~~ 369 (406)
T COG1819 294 QLELLPRADAVIHHGGAGTTSEALYA----GVPLVVIPDGADQPLNAERVEELGAGIALPFEELTEERLRAAVNEVLADD 369 (406)
T ss_pred HHHHhhhcCEEEecCCcchHHHHHHc----CCCEEEecCCcchhHHHHHHHHcCCceecCcccCCHHHHHHHHHHHhcCH
Confidence 34567899999999999999998764 5788877553 3443333 45566777777777644
No 196
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=49.34 E-value=31 Score=37.91 Aligned_cols=43 Identities=14% Similarity=0.103 Sum_probs=27.3
Q ss_pred CHHHHHHHHHHHhcCCCCcEEEeCccCCchHHHHHHHHHHhcCCC
Q 002281 331 TMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMARC 375 (943)
Q Consensus 331 s~E~v~aFlelL~ds~~~PVLVHC~AGKDRTGALvaLlr~~lGvs 375 (943)
+.+.+++++.-.--..+.||+++|..|. |+..++..+. .+|..
T Consensus 215 ~~~~l~~~~~~~g~~~~~~ii~yC~~G~-~A~~~~~~l~-~~G~~ 257 (281)
T PRK11493 215 TTDELDAIFFGRGVSFDRPIIASCGSGV-TAAVVVLALA-TLDVP 257 (281)
T ss_pred CHHHHHHHHHhcCCCCCCCEEEECCcHH-HHHHHHHHHH-HcCCC
Confidence 3555655544321135679999999999 8876655554 56654
No 197
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=48.84 E-value=67 Score=35.37 Aligned_cols=82 Identities=16% Similarity=0.067 Sum_probs=40.8
Q ss_pred CCHhhHHHHHHcCCcEEEEcCCCcccCcchh-hhhHHhhhcCCcEEEEEecCC---------CCCCCHHHHHHHHHHHhc
Q 002281 275 VTEEGLKWLMEKGYKTIVDIRAERVKDNFYE-AAIDDAILSGKVELIKIPVEV---------RTAPTMEQVEKFASLVSN 344 (943)
Q Consensus 275 pT~eDLa~Lk~lGIKTVIDLRse~~ee~~~~-a~e~e~~e~~GI~yIhIPV~d---------~~~Ps~E~v~aFlelL~d 344 (943)
.+.+++....+.+=-.|||.|+......... ..+-..-...|- +++|+.. ...++.+.++++++-+--
T Consensus 7 vs~~~l~~~l~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi 84 (281)
T PRK11493 7 VAADWLAEHIDDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGA--VFFDIEALSDHTSPLPHMMPRPETFAVAMRELGV 84 (281)
T ss_pred cCHHHHHHhcCCCCeEEEEeeCCCCCccccchHHHHHhCcCCCC--EEcCHHHhcCCCCCCCCCCCCHHHHHHHHHHcCC
Confidence 4666666655543357999997531000000 001011122333 3444321 112345666666655422
Q ss_pred CCCCcEEEeCccCC
Q 002281 345 SSKKPLYLHSKEGV 358 (943)
Q Consensus 345 s~~~PVLVHC~AGK 358 (943)
..+.||+++|..|.
T Consensus 85 ~~d~~VVvyc~~~~ 98 (281)
T PRK11493 85 NQDKHLVVYDEGNL 98 (281)
T ss_pred CCCCEEEEECCCCC
Confidence 45779999998775
No 198
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=48.12 E-value=27 Score=39.63 Aligned_cols=83 Identities=14% Similarity=0.181 Sum_probs=48.5
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccc-cccCccEEEEEcCCchHH
Q 002281 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVIL 769 (943)
Q Consensus 691 k~VlIv~K~~~~~~~~a~~l~~~L~~~~g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~DlVIvLGGDGTiL 769 (943)
++++||.-.+-. .....++.+.|. ..++.+.+-..+ +....+... .+. ...++|+||.+|| |+++
T Consensus 24 ~~~liv~d~~~~-~~~~~~l~~~L~-~~~~~~~~~~~~-------p~~~~v~~~----~~~~~~~~~D~iIavGG-Gs~~ 89 (347)
T cd08172 24 KRPLIVTGPRSW-AAAKPYLPESLA-AGEAFVLRYDGE-------CSEENIERL----AAQAKENGADVIIGIGG-GKVL 89 (347)
T ss_pred CeEEEEECHHHH-HHHHHHHHHHHh-cCeEEEEEeCCC-------CCHHHHHHH----HHHHHhcCCCEEEEeCC-cHHH
Confidence 688888865531 234566667773 345554432221 111111000 011 1246899999999 9999
Q ss_pred HHhhhccC-CCCcEEEEeC
Q 002281 770 HASNLFRG-AVPPVISFNL 787 (943)
Q Consensus 770 ~Aar~~~~-~~~PVLGIN~ 787 (943)
-+++.... ..+|++.|.+
T Consensus 90 D~aK~ia~~~~~p~i~VPT 108 (347)
T cd08172 90 DTAKAVADRLGVPVITVPT 108 (347)
T ss_pred HHHHHHHHHhCCCEEEecC
Confidence 99997642 3679988875
No 199
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=47.94 E-value=15 Score=37.69 Aligned_cols=36 Identities=17% Similarity=0.081 Sum_probs=26.0
Q ss_pred cCccEEEEEcCCchHH-----HHhhhccCCCCcEEEEeCCC
Q 002281 754 ERVDFVACLGGDGVIL-----HASNLFRGAVPPVISFNLGS 789 (943)
Q Consensus 754 ~~~DlVIvLGGDGTiL-----~Aar~~~~~~~PVLGIN~Gs 789 (943)
..+|.||+.||.|+.. ..........+|||||-+|.
T Consensus 41 ~~~dgvil~gG~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~ 81 (184)
T cd01743 41 LNPDAIVISPGPGHPEDAGISLEIIRALAGKVPILGVCLGH 81 (184)
T ss_pred cCCCEEEECCCCCCcccchhHHHHHHHHhcCCCEEEECHhH
Confidence 4689999999999853 23333233568999999984
No 200
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=47.64 E-value=27 Score=40.32 Aligned_cols=75 Identities=16% Similarity=0.088 Sum_probs=41.7
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCcc-ccccCccEEEEEcCCchHH
Q 002281 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTS-DLHERVDFVACLGGDGVIL 769 (943)
Q Consensus 691 k~VlIv~K~~~~~~~~a~~l~~~L~~~~g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~DlVIvLGGDGTiL 769 (943)
++++||....-.......++.+.|.+ .++++.+-..+.. .+....+. .... -...++|+||.||| |.++
T Consensus 23 ~~~livt~~~~~~~~~~~~v~~~L~~-~~~~~~~f~~v~~----~~~~~~v~----~~~~~~~~~~~D~IIaiGG-GS~i 92 (386)
T cd08191 23 SRALIVTDERMAGTPVFAELVQALAA-AGVEVEVFDGVLP----DLPRSELC----DAASAAARAGPDVIIGLGG-GSCI 92 (386)
T ss_pred CeEEEEECcchhhcchHHHHHHHHHH-cCCeEEEECCCCC----CcCHHHHH----HHHHHHHhcCCCEEEEeCC-chHH
Confidence 78999985442222455667777754 4666554332210 00000000 0000 11257899999999 9999
Q ss_pred HHhhhc
Q 002281 770 HASNLF 775 (943)
Q Consensus 770 ~Aar~~ 775 (943)
-+++..
T Consensus 93 D~aK~i 98 (386)
T cd08191 93 DLAKIA 98 (386)
T ss_pred HHHHHH
Confidence 998865
No 201
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=47.34 E-value=50 Score=29.91 Aligned_cols=15 Identities=13% Similarity=0.308 Sum_probs=12.3
Q ss_pred CCCcEEEeCccCCchH
Q 002281 346 SKKPLYLHSKEGVWRT 361 (943)
Q Consensus 346 ~~~PVLVHC~AGKDRT 361 (943)
.+.|++++|..|. |.
T Consensus 49 ~~~~ivl~c~~G~-~~ 63 (92)
T cd01532 49 RDTPIVVYGEGGG-ED 63 (92)
T ss_pred CCCeEEEEeCCCC-ch
Confidence 4679999999998 53
No 202
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=46.56 E-value=40 Score=35.13 Aligned_cols=34 Identities=18% Similarity=0.210 Sum_probs=24.8
Q ss_pred CccEEEEEcCCchHH------HHhhhccCCCCcEEEEeCCC
Q 002281 755 RVDFVACLGGDGVIL------HASNLFRGAVPPVISFNLGS 789 (943)
Q Consensus 755 ~~DlVIvLGGDGTiL------~Aar~~~~~~~PVLGIN~Gs 789 (943)
++|.+|+.||.|..- ...+.+ ...+|||||-+|.
T Consensus 43 ~~~~iilsgGp~~~~~~~~~~~~i~~~-~~~~PiLGIClG~ 82 (193)
T PRK08857 43 NPTHLVISPGPCTPNEAGISLQAIEHF-AGKLPILGVCLGH 82 (193)
T ss_pred CCCEEEEeCCCCChHHCcchHHHHHHh-cCCCCEEEEcHHH
Confidence 468999999998753 233333 3578999999984
No 203
>PRK06203 aroB 3-dehydroquinate synthase; Reviewed
Probab=46.32 E-value=39 Score=39.42 Aligned_cols=33 Identities=21% Similarity=0.366 Sum_probs=25.6
Q ss_pred cCccEEEEEcCCchHHHHhhhcc---CCCCcEEEEeC
Q 002281 754 ERVDFVACLGGDGVILHASNLFR---GAVPPVISFNL 787 (943)
Q Consensus 754 ~~~DlVIvLGGDGTiL~Aar~~~---~~~~PVLGIN~ 787 (943)
++.|+||.||| |+++-++.... ...+|++-|.+
T Consensus 110 dr~d~IIaiGG-Gsv~D~ak~iA~~~~rgip~I~IPT 145 (389)
T PRK06203 110 DRHSYVLAIGG-GAVLDMVGYAAATAHRGVRLIRIPT 145 (389)
T ss_pred CCCceEEEeCC-cHHHHHHHHHHHHhcCCCCEEEEcC
Confidence 45679999999 99999977653 34678887765
No 204
>PF05925 IpgD: Enterobacterial virulence protein IpgD; InterPro: IPR008108 Some Gram-negative animal enteropathogens express a specialised secretion system to directly "inject" exotoxins into the cytoplasm of host cells. Dubbed the type III secretion system, it is of specific interest to researchers, as the components of such a system are only expressed in pathogenic strains []. The system is composed of structural proteins and exotoxin effectors; these are often encoded on large virulence plasmids or on the bacterial chromosome itself []. The Shigella flexneri invasion plasmid antigen (ipa) genes are found on such a plasmid, and are arranged into an operon. Directly upstream of this operon is another cluster of type III genes, termed ipgD, E and F []. Deletion mutational studies of all three genes showed they were essential for virulence in S. flexneri, and that IpgD is secreted by the type III needle to the outside of the bacterial cell []. Further analysis of the ipg operon confirmed that the IpgD gene product is chaperoned by the IpgE protein while in the bacterial cytoplasm []. More recently, a large study into the spread of the ipa/mxi/ipg pathogenicity islands through their relevant plasmid has revealed that homologues exist in many different Shigella strains, as well as enteroinvasive Escherichia coli and Salmonella spp []. There is evidence that the genes were acquired from Shigella through lateral transfer, like most of the other type III secretion system virulence plasmids.; GO: 0016791 phosphatase activity, 0009405 pathogenesis; PDB: 4DID_B.
Probab=46.12 E-value=6.7 Score=47.12 Aligned_cols=23 Identities=17% Similarity=-0.028 Sum_probs=0.0
Q ss_pred CCCcEEEeCccCCchHHHHHHHH
Q 002281 346 SKKPLYLHSKEGVWRTYAMVSRW 368 (943)
Q Consensus 346 ~~~PVLVHC~AGKDRTGALvaLl 368 (943)
......+.|++||||||+|-.-+
T Consensus 452 iGavp~~NCKSGKDRTG~lD~ei 474 (559)
T PF05925_consen 452 IGAVPCWNCKSGKDRTGMLDAEI 474 (559)
T ss_dssp -----------------------
T ss_pred hCCeeeccCccCCccccccHHHH
Confidence 34567789999999999765443
No 205
>TIGR03405 Phn_Fe-ADH phosphonate metabolism-associated iron-containing alcohol dehydrogenase. 2-hydroxyethylphosphonate (2-HEP), the presumed product of the reaction of Pald with an alcohol dehydrogenase, is a biologically novel but reasonable analog of 2-AEP and may be a constituent of as-yet undescribed natural products. In the case of Azoarcus, downstream of the dehydrogenase is a CDP-glycerol:glycerophosphate transferase homolog that may indicate the existence of a pathway for 2-HEP-derived phosphonolipid biosynthesis.
Probab=46.05 E-value=29 Score=39.60 Aligned_cols=76 Identities=21% Similarity=0.375 Sum_probs=38.6
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccccccCccEEEEEcCCchHHH
Q 002281 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILH 770 (943)
Q Consensus 691 k~VlIv~K~~~~~~~~a~~l~~~L~~~~g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIvLGGDGTiL~ 770 (943)
++++||....-.......++.+.|... ...++ .++. ..|....+...... ..+...++|+||.||| |+++-
T Consensus 24 ~r~lvVtd~~~~~~g~~~~v~~~L~~~-~~~~~--~~v~----~~pt~~~v~~~~~~-~~~~~~~~D~IIaiGG-GSviD 94 (355)
T TIGR03405 24 RRVVVVTFPEARALGLARRLEALLGGR-LAALI--DDVA----PNPDVAQLDGLYAR-LWGDEGACDLVIALGG-GSVID 94 (355)
T ss_pred CeEEEEECcchhhcchHHHHHHHhccC-cEEEe--CCCC----CCcCHHHHHHHHHH-HHhcCCCCCEEEEeCC-ccHHH
Confidence 789999865432234556777777432 23332 1111 01111000000000 0011134999999999 99998
Q ss_pred Hhhhc
Q 002281 771 ASNLF 775 (943)
Q Consensus 771 Aar~~ 775 (943)
+++..
T Consensus 95 ~aK~i 99 (355)
T TIGR03405 95 TAKVL 99 (355)
T ss_pred HHHHH
Confidence 88753
No 206
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=45.73 E-value=37 Score=40.63 Aligned_cols=67 Identities=21% Similarity=0.245 Sum_probs=37.5
Q ss_pred cEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCccCCchHHHHHHHH
Q 002281 289 KTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRW 368 (943)
Q Consensus 289 KTVIDLRse~~ee~~~~a~e~e~~e~~GI~yIhIPV~d~~~Ps~E~v~aFlelL~ds~~~PVLVHC~AGKDRTGALvaLl 368 (943)
..+||.|+++ + |. ...+...+++.+++|+. .+.....-+ ..++|++++|.+|. |+..++..+
T Consensus 408 ~~lIDVR~~~-E---~~---~~hI~g~~~~a~niP~~--------~l~~~~~~l--~~~~~iivyC~~G~-rS~~aa~~L 469 (482)
T PRK01269 408 DVIIDIRSPD-E---QE---DKPLKLEGVEVKSLPFY--------KLSTQFGDL--DQSKTYLLYCDRGV-MSRLQALYL 469 (482)
T ss_pred CEEEECCCHH-H---Hh---cCCCCCCCceEEECCHH--------HHHHHHhhc--CCCCeEEEECCCCH-HHHHHHHHH
Confidence 3588888865 1 10 00011112566777764 222222222 34679999999998 888766655
Q ss_pred HHhcCC
Q 002281 369 RQYMAR 374 (943)
Q Consensus 369 r~~lGv 374 (943)
.. +|.
T Consensus 470 ~~-~G~ 474 (482)
T PRK01269 470 RE-QGF 474 (482)
T ss_pred HH-cCC
Confidence 44 453
No 207
>PF02126 PTE: Phosphotriesterase family; InterPro: IPR001559 Synonym(s): Paraoxonase, A-esterase, Aryltriphosphatase, Phosphotriesterase, Paraoxon hydrolase Bacteria such as Brevundimonas diminuta (Pseudomonas diminuta) harbour a plasmid that carries the gene for Aryldialkylphosphatase (3.1.8.1 from EC) (PTE) (also known as parathion hydrolase). This enzyme has attracted interest because of its potential use in the detoxification of chemical waste and warfare agents and its ability to degrade agricultural pesticides such as parathion. It acts specifically on synthetic organophosphate triesters and phosphorofluoridates. It does not seem to have a natural occuring substrate and may thus have optimally evolved for utilizing paraoxon. Aryldialkylphosphatase belongs to a family [, ] of enzymes that possess a binuclear zinc metal centre at their active site. The two zinc ions are coordinated by six different residues, six of which being histidines. This family so far includes, in addition to the parathion hydrolase, the following proteins: Escherichia coli protein Php, the substrate of which is not yet known. Mycobacterium tuberculosis phosphotriesterase homology protein Rv0230C. Mammalian phosphotriesterase related protein (PTER) (RPR-1). ; GO: 0008270 zinc ion binding, 0016788 hydrolase activity, acting on ester bonds, 0009056 catabolic process; PDB: 3MSR_A 3OVG_D 3K2G_C 1BF6_B 3OQE_A 3C86_A 3SO7_A 2D2G_A 2R1P_A 2D2H_A ....
Probab=45.55 E-value=32 Score=38.96 Aligned_cols=42 Identities=24% Similarity=0.186 Sum_probs=25.9
Q ss_pred hhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEE
Q 002281 278 EGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIK 321 (943)
Q Consensus 278 eDLa~Lk~lGIKTVIDLRse~~ee~~~~a~e~e~~e~~GI~yIh 321 (943)
.+++.++++|.+||||..+... ...+...++..+.-|++.|.
T Consensus 42 ~El~~~k~~Gg~tiVd~T~~g~--GRd~~~l~~is~~tGv~II~ 83 (308)
T PF02126_consen 42 AELKEFKAAGGRTIVDATPIGL--GRDVEALREISRRTGVNIIA 83 (308)
T ss_dssp HHHHHHHHTTEEEEEE--SGGG--TB-HHHHHHHHHHHT-EEEE
T ss_pred HHHHHHHHcCCCEEEecCCccc--CcCHHHHHHHHHHhCCeEEE
Confidence 4678889999999999988752 11222345556677877754
No 208
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=45.36 E-value=73 Score=36.36 Aligned_cols=112 Identities=16% Similarity=0.192 Sum_probs=69.6
Q ss_pred EcCCCCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHh----cCC
Q 002281 271 RGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVS----NSS 346 (943)
Q Consensus 271 RSGqpT~eDLa~Lk~lGIKTVIDLRse~~ee~~~~a~e~e~~e~~GI~yIhIPV~d~~~Ps~E~v~aFlelL~----ds~ 346 (943)
+|-.++|+++..+....=.-|||-|.+- | +.+=|+ .+.-.|..+.+++|-.++. ...
T Consensus 111 vG~yl~p~~wn~~l~D~~~vviDtRN~Y-E----------------~~iG~F--~gAv~p~~~tFrefP~~v~~~~~~~~ 171 (308)
T COG1054 111 VGTYLSPKDWNELLSDPDVVVIDTRNDY-E----------------VAIGHF--EGAVEPDIETFREFPAWVEENLDLLK 171 (308)
T ss_pred ccCccCHHHHHHHhcCCCeEEEEcCcce-e----------------Eeeeee--cCccCCChhhhhhhHHHHHHHHHhcc
Confidence 4667889998887766558889998863 1 011011 1122344455555554443 235
Q ss_pred CCcEEEeCccCCchHHHHHHHHHHhcCCCHHHHHHHhhccccccccchHHHhhhhhchhhhhhhhhccchhhhHhhhhc-
Q 002281 347 KKPLYLHSKEGVWRTYAMVSRWRQYMARCASQISGQTITSNDVLLKDSTRTRKLKASAGKFLLEEKYETVKENQDEIQT- 425 (943)
Q Consensus 347 ~~PVLVHC~AGKDRTGALvaLlr~~lGvs~edAiaDYLlsn~~~~~~~e~~r~~~m~a~~~~l~~~~g~~e~~~~~~~~- 425 (943)
+++|++.|+.|. |.=-..+.++. ..++-+-+=-||+-+|++++..
T Consensus 172 ~KkVvmyCTGGI-RCEKas~~m~~---------------------------------~GF~eVyhL~GGIl~Y~e~~~~~ 217 (308)
T COG1054 172 DKKVVMYCTGGI-RCEKASAWMKE---------------------------------NGFKEVYHLEGGILKYLEDVGTE 217 (308)
T ss_pred CCcEEEEcCCce-eehhhHHHHHH---------------------------------hcchhhhcccchHHHHhhhcCcc
Confidence 679999999999 87755444433 1334455557999999998843
Q ss_pred ------cCcccccccc
Q 002281 426 ------KNGVFGFGLS 435 (943)
Q Consensus 426 ------~~~~~~~~~~ 435 (943)
.++||++-.+
T Consensus 218 g~lw~G~cFVFDeRva 233 (308)
T COG1054 218 GSLWDGKCFVFDERVA 233 (308)
T ss_pred CceeccceeEecceec
Confidence 5677776444
No 209
>PF13685 Fe-ADH_2: Iron-containing alcohol dehydrogenase; PDB: 3CE9_C.
Probab=44.72 E-value=63 Score=35.67 Aligned_cols=89 Identities=20% Similarity=0.314 Sum_probs=50.3
Q ss_pred CCCEEEEEecCChhHHH-HHHHHHHHHhcCCCeEEEEc------CChhhhhhcCCCCccceeeeccCcccc-ccCccEEE
Q 002281 689 TPRTVLVLKKPGPALME-EAKEVASFLYHQEKMNILVE------PDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVA 760 (943)
Q Consensus 689 ~pk~VlIv~K~~~~~~~-~a~~l~~~L~~~~g~~V~ve------~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~DlVI 760 (943)
..++++||.-.+. .+ ..+++.+.|.. .|++|.+- ++... +.++ ...+ ..++|+||
T Consensus 18 ~~~~~lvv~d~~t--~~~~g~~v~~~l~~-~g~~v~~~~~~~~~~~~~~-~~~~-------------~~~~~~~~~d~ii 80 (250)
T PF13685_consen 18 GLKKVLVVTDENT--YKAAGEKVEESLKS-AGIEVAVIEEFVGDADEDE-VEKL-------------VEALRPKDADLII 80 (250)
T ss_dssp T-SEEEEEEETTH--HHHHHHHHHHHHHT-TT-EEEEEE-EE---BHHH-HHHH-------------HTTS--TT--EEE
T ss_pred CCCcEEEEEcCCH--HHHHHHHHHHHHHH-cCCeEEEEecCCCCCCHHH-HHHH-------------HHHhcccCCCEEE
Confidence 4579999998773 22 23566677754 47776521 11111 1000 0122 35789999
Q ss_pred EEcCCchHHHHhhhccC-CCCcEEEEeC--CCCcccCC
Q 002281 761 CLGGDGVILHASNLFRG-AVPPVISFNL--GSLGFLTS 795 (943)
Q Consensus 761 vLGGDGTiL~Aar~~~~-~~~PVLGIN~--GsLGFLt~ 795 (943)
.+|| ||+.-.+++... .++|.+.|-+ =+=||-++
T Consensus 81 ~vGg-G~i~D~~K~~A~~~~~p~isVPTa~S~DG~aS~ 117 (250)
T PF13685_consen 81 GVGG-GTIIDIAKYAAFELGIPFISVPTAASHDGFASP 117 (250)
T ss_dssp EEES-HHHHHHHHHHHHHHT--EEEEES--SSGGGTSS
T ss_pred EeCC-cHHHHHHHHHHHhcCCCEEEeccccccccccCC
Confidence 9999 999999998753 5789998865 34455544
No 210
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=44.49 E-value=49 Score=37.58 Aligned_cols=24 Identities=17% Similarity=0.074 Sum_probs=17.0
Q ss_pred cEEEeCc-cCCchHHHHHHHHHHhcCC
Q 002281 349 PLYLHSK-EGVWRTYAMVSRWRQYMAR 374 (943)
Q Consensus 349 PVLVHC~-AGKDRTGALvaLlr~~lGv 374 (943)
.++++|. .|. |++.++.++.. +|.
T Consensus 76 ~vvvyC~~gG~-RS~~aa~~L~~-~G~ 100 (311)
T TIGR03167 76 QPLLYCWRGGM-RSGSLAWLLAQ-IGF 100 (311)
T ss_pred cEEEEECCCCh-HHHHHHHHHHH-cCC
Confidence 4999995 566 99977666644 465
No 211
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=44.23 E-value=78 Score=29.66 Aligned_cols=78 Identities=21% Similarity=0.228 Sum_probs=38.9
Q ss_pred CCHhhHHHHHHcC--CcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEE
Q 002281 275 VTEEGLKWLMEKG--YKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYL 352 (943)
Q Consensus 275 pT~eDLa~Lk~lG--IKTVIDLRse~~ee~~~~a~e~e~~e~~GI~yIhIPV~d~~~Ps~E~v~aFlelL~ds~~~PVLV 352 (943)
++++++..+...+ --.|||+|+.+ +. . -...| -+++|.... ...+..+.+......+.+++|
T Consensus 4 is~~~l~~~~~~~~~~~~iiDvR~~e-----~~--~---~hi~g--A~~ip~~~l----~~~~~~~~~~~~~~~~~~iv~ 67 (113)
T cd01531 4 ISPAQLKGWIRNGRPPFQVVDVRDED-----YA--G---GHIKG--SWHYPSTRF----KAQLNQLVQLLSGSKKDTVVF 67 (113)
T ss_pred CCHHHHHHHHHcCCCCEEEEEcCCcc-----cC--C---CcCCC--CEecCHHHH----hhCHHHHHHHHhcCCCCeEEE
Confidence 5677777776654 23589999752 11 0 01112 234555411 112222222221134579999
Q ss_pred eCccCCchHHHHHHHH
Q 002281 353 HSKEGVWRTYAMVSRW 368 (943)
Q Consensus 353 HC~AGKDRTGALvaLl 368 (943)
||..+..|....+..+
T Consensus 68 yC~~~~~r~~~aa~~l 83 (113)
T cd01531 68 HCALSQVRGPSAARKF 83 (113)
T ss_pred EeecCCcchHHHHHHH
Confidence 9994433777554433
No 212
>PRK15378 inositol phosphate phosphatase SopB; Provisional
Probab=43.86 E-value=14 Score=44.11 Aligned_cols=18 Identities=33% Similarity=0.117 Sum_probs=15.1
Q ss_pred EEeCccCCchHHHHHHHH
Q 002281 351 YLHSKEGVWRTYAMVSRW 368 (943)
Q Consensus 351 LVHC~AGKDRTGALvaLl 368 (943)
.+.|++||||||+|=+-+
T Consensus 460 ~wNCkSGKDRTGmmD~ei 477 (564)
T PRK15378 460 AWNCKSGKDRTGMMDSEI 477 (564)
T ss_pred eeccCCCCccccchHHHH
Confidence 689999999999776554
No 213
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=43.75 E-value=18 Score=45.67 Aligned_cols=54 Identities=15% Similarity=0.230 Sum_probs=36.2
Q ss_pred cCccEEEEEcCCchHHHHhhhcc----------------------CCCCcEEEEeC-------C---CCcccCCCCchhH
Q 002281 754 ERVDFVACLGGDGVILHASNLFR----------------------GAVPPVISFNL-------G---SLGFLTSHPFEDY 801 (943)
Q Consensus 754 ~~~DlVIvLGGDGTiL~Aar~~~----------------------~~~~PVLGIN~-------G---sLGFLt~~~~ed~ 801 (943)
.++|.+|++|||||+-.|..+.. ...+||+||-- | ++||-|..+. +
T Consensus 93 ~~Id~LivIGGdgS~~~a~~l~~e~~~~~~~l~~~~~i~~~~~~~~~~l~vvGiPkTIDNDl~gTd~TiGfdTA~~~--i 170 (745)
T TIGR02478 93 RGIDNLVVIGGDGSLTGADLFREEWPSLLEELVDTGKITAEQAEEHRHLTIVGLVGSIDNDMCGTDMTIGADSALHR--I 170 (745)
T ss_pred hCCCEEEEECChhHHHHHHHHHHHhHHHHHHHHHccchhHHHHhcCCCCcEEEEccccccCCCCCcCCCCHHHHHHH--H
Confidence 47999999999999877653221 23689999842 3 7888886542 3
Q ss_pred HHHHHHHH
Q 002281 802 RQDLRQVI 809 (943)
Q Consensus 802 ~~~L~~ll 809 (943)
-++++++.
T Consensus 171 ~~aid~i~ 178 (745)
T TIGR02478 171 CEAIDAIS 178 (745)
T ss_pred HHHHHHHH
Confidence 34444443
No 214
>PRK00843 egsA NAD(P)-dependent glycerol-1-phosphate dehydrogenase; Reviewed
Probab=43.65 E-value=74 Score=36.34 Aligned_cols=32 Identities=25% Similarity=0.413 Sum_probs=26.0
Q ss_pred CccEEEEEcCCchHHHHhhhcc-CCCCcEEEEeC
Q 002281 755 RVDFVACLGGDGVILHASNLFR-GAVPPVISFNL 787 (943)
Q Consensus 755 ~~DlVIvLGGDGTiL~Aar~~~-~~~~PVLGIN~ 787 (943)
++|+||.||| |+++-+++... ...+|++-|.+
T Consensus 87 ~~d~IIaiGG-Gsv~D~ak~vA~~rgip~I~IPT 119 (350)
T PRK00843 87 NAGFLIGVGG-GKVIDVAKLAAYRLGIPFISVPT 119 (350)
T ss_pred CCCEEEEeCC-chHHHHHHHHHHhcCCCEEEeCC
Confidence 5799999999 99999888754 24678888875
No 215
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=43.15 E-value=83 Score=39.00 Aligned_cols=44 Identities=7% Similarity=-0.044 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHHHhcCCCCcEEEeCccCCchHHHHHHHHHHhcCCC
Q 002281 330 PTMEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMARC 375 (943)
Q Consensus 330 Ps~E~v~aFlelL~ds~~~PVLVHC~AGKDRTGALvaLlr~~lGvs 375 (943)
.+.+.+.++++-+--..++||++||..|. |++.++..+ .++|.+
T Consensus 206 k~~~el~~~~~~~Gi~~~~~VVvYC~sG~-rAa~~~~~L-~~lG~~ 249 (610)
T PRK09629 206 RIRQDMPEILRDLGITPDKEVITHCQTHH-RSGFTYLVA-KALGYP 249 (610)
T ss_pred CCHHHHHHHHHHcCCCCCCCEEEECCCCh-HHHHHHHHH-HHcCCC
Confidence 45566666654432245679999999997 877665554 345654
No 216
>PRK07053 glutamine amidotransferase; Provisional
Probab=42.75 E-value=54 Score=35.55 Aligned_cols=80 Identities=16% Similarity=0.123 Sum_probs=44.9
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccccccCccEEEEEcCCchH-
Q 002281 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVI- 768 (943)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~~l~~~L~~~~g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIvLGGDGTi- 768 (943)
.++|+||.+...+-.. .+.+||.+ .|..+-+-....+.+ ...+ ..++|.+|+.||-...
T Consensus 2 m~~ilviqh~~~e~~g---~i~~~L~~-~g~~~~v~~~~~~~~---------------~~~~-~~~~d~lii~Ggp~~~~ 61 (234)
T PRK07053 2 MKTAVAIRHVAFEDLG---SFEQVLGA-RGYRVRYVDVGVDDL---------------ETLD-ALEPDLLVVLGGPIGVY 61 (234)
T ss_pred CceEEEEECCCCCCCh---HHHHHHHH-CCCeEEEEecCCCcc---------------CCCC-ccCCCEEEECCCCCCCC
Confidence 3579999988754332 25667754 455544321110000 0111 2468999999975422
Q ss_pred -----------HHHhhhccCCCCcEEEEeCCC
Q 002281 769 -----------LHASNLFRGAVPPVISFNLGS 789 (943)
Q Consensus 769 -----------L~Aar~~~~~~~PVLGIN~Gs 789 (943)
+...+.+....+||+||-+|.
T Consensus 62 d~~~~p~~~~~~~~i~~~~~~~~PvlGIC~G~ 93 (234)
T PRK07053 62 DDELYPFLAPEIALLRQRLAAGLPTLGICLGA 93 (234)
T ss_pred CCCcCCcHHHHHHHHHHHHHCCCCEEEECccH
Confidence 233333344578999999985
No 217
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=42.69 E-value=63 Score=27.83 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=18.5
Q ss_pred CCCCcEEEeCccCCchHHHHHHHHHH
Q 002281 345 SSKKPLYLHSKEGVWRTYAMVSRWRQ 370 (943)
Q Consensus 345 s~~~PVLVHC~AGKDRTGALvaLlr~ 370 (943)
..+.+|+++|..|. |+..++..++.
T Consensus 48 ~~~~~vv~~c~~~~-~a~~~~~~l~~ 72 (89)
T cd00158 48 DKDKPIVVYCRSGN-RSARAAKLLRK 72 (89)
T ss_pred CCCCeEEEEeCCCc-hHHHHHHHHHH
Confidence 45789999999987 77765555544
No 218
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=42.47 E-value=52 Score=41.57 Aligned_cols=78 Identities=19% Similarity=0.232 Sum_probs=47.3
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccccccCccEEEEEcCCchH-
Q 002281 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVI- 768 (943)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~~l~~~L~~~~g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIvLGGDGTi- 768 (943)
.++|+||-.... ....+.+||.+ .|+++.+-+.... .+..+ ..++|.||+.||-|+.
T Consensus 516 ~~~IlVID~gds----~~~~l~~~L~~-~G~~v~vv~~~~~----------------~~~~~-~~~~DgLILsgGPGsp~ 573 (717)
T TIGR01815 516 GRRILLVDHEDS----FVHTLANYLRQ-TGASVTTLRHSHA----------------EAAFD-ERRPDLVVLSPGPGRPA 573 (717)
T ss_pred CCEEEEEECCCh----hHHHHHHHHHH-CCCeEEEEECCCC----------------hhhhh-hcCCCEEEEcCCCCCch
Confidence 478999975532 23467777754 4766654322100 00001 1358999999999885
Q ss_pred ----HHHhhhccCCCCcEEEEeCCC
Q 002281 769 ----LHASNLFRGAVPPVISFNLGS 789 (943)
Q Consensus 769 ----L~Aar~~~~~~~PVLGIN~Gs 789 (943)
....+.+....+|||||-+|.
T Consensus 574 d~~~~~~I~~~~~~~iPvLGICLG~ 598 (717)
T TIGR01815 574 DFDVAGTIDAALARGLPVFGVCLGL 598 (717)
T ss_pred hcccHHHHHHHHHCCCCEEEECHHH
Confidence 333343334679999999985
No 219
>cd08199 EEVS 2-epi-5-epi-valiolone synthase (EEVS). 2-epi-5-epi-valiolone synthases catalyze the cyclization of sedoheptulose 7-phosphate to 2-epi-5-epi-valiolone in the biosynthesis of C(7)N-aminocyclitol-containing products. The cyclization product, 2-epi-5-epi-valiolone ((2S,3S,4S,5R)-5-(hydroxymethyl)cyclohexanon-2,3,4,5-tetrol), is a precursor of the valienamine moiety. The valienamine unit is responsible for their biological activities as various glycosidic hydrolases inhibitors. Two important microbial secondary metabolites, i.e., validamycin and acarbose, are used in agricultural and biomedical applications. Validamycine A is an antifungal antibiotic which has a strong trehalase inhibitory activity and has been used to control sheath blight disease in rice caused by Rhizoctonia solani. Acarbose is an alpha-glucosidase inhibitor used for the treatment of type II insulin-independent diabetes. Salbostatin produced by Streptomyces albus also belongs to this family. It exhibits s
Probab=42.08 E-value=50 Score=37.99 Aligned_cols=93 Identities=15% Similarity=0.177 Sum_probs=48.6
Q ss_pred cCCCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEE--EcCChhhhhhcCCCCccceeeecc-CccccccCccEEEEEcC
Q 002281 688 TTPRTVLVLKKPGPALMEEAKEVASFLYHQEKMNIL--VEPDVHDIFARIPGFGFVQTFYLQ-DTSDLHERVDFVACLGG 764 (943)
Q Consensus 688 ~~pk~VlIv~K~~~~~~~~a~~l~~~L~~~~g~~V~--ve~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~DlVIvLGG 764 (943)
..+++++||.-..-.. ....++.+.|.+ .++++. +-+.... .+.+..+...... .......++|+||.+||
T Consensus 24 ~~~~~~lvVtd~~v~~-~~~~~v~~~l~~-~g~~~~~~v~~~~e~----~~s~~~v~~~~~~l~~~~~~r~~d~IVaiGG 97 (354)
T cd08199 24 EGSGRRFVVVDQNVDK-LYGKKLREYFAH-HNIPLTILVLRAGEA----AKTMDTVLKIVDALDAFGISRRREPVLAIGG 97 (354)
T ss_pred cCCCeEEEEECccHHH-HHHHHHHHHHHh-cCCceEEEEeCCCCC----CCCHHHHHHHHHHHHHcCCCCCCCEEEEECC
Confidence 3568899998554321 134678888854 345433 2122110 0111111100000 00111234599999999
Q ss_pred CchHHHHhhhcc---CCCCcEEEEeC
Q 002281 765 DGVILHASNLFR---GAVPPVISFNL 787 (943)
Q Consensus 765 DGTiL~Aar~~~---~~~~PVLGIN~ 787 (943)
|+++-+++... ...+|.+-|.+
T Consensus 98 -G~v~D~ak~~A~~~~rg~p~i~VPT 122 (354)
T cd08199 98 -GVLTDVAGLAASLYRRGTPYVRIPT 122 (354)
T ss_pred -cHHHHHHHHHHHHhcCCCCEEEEcC
Confidence 99999888764 45677766654
No 220
>cd08197 DOIS 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-deoxy-scyllo-inosose synthase (DOIS) catalyzes carbocycle formation from D-glucose-6-phosphate to 2-deoxy-scyllo-inosose through a multistep reaction in the biosynthesis of aminoglycoside antibiotics. 2-Deoxystreptamine (DOS)-containing aminoglycoside antibiotics includes neomycin, kanamycin, gentamicin, and ribostamycin. They are important antibacterial agents. DOIS is a homologue of the dehydroquinate synthase which catalyzes the cyclization of 3-deoxy-D-arabino-heputulosonate-7-phosphate to dehydroquinate (DHQ) in the shikimate pathway.
Probab=42.07 E-value=44 Score=38.45 Aligned_cols=87 Identities=11% Similarity=0.156 Sum_probs=47.7
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeE--EEEcCChhhhhhcCCCCccceeeeccCcccc-ccCcc---EEEEEc
Q 002281 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMN--ILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVD---FVACLG 763 (943)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~~l~~~L~~~~g~~--V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~D---lVIvLG 763 (943)
.++++||....-... ...++.+.|.+. +++ +++-+... ..+.+..+.... ..+ ..++| +||.+|
T Consensus 23 ~~rvlvVtd~~v~~~-~~~~l~~~L~~~-g~~~~~~~~~~~e----~~k~~~~v~~~~----~~~~~~~~dr~~~IIAvG 92 (355)
T cd08197 23 ADKYLLVTDSNVEDL-YGHRLLEYLREA-GAPVELLSVPSGE----EHKTLSTLSDLV----ERALALGATRRSVIVALG 92 (355)
T ss_pred CCeEEEEECccHHHH-HHHHHHHHHHhc-CCceEEEEeCCCC----CCCCHHHHHHHH----HHHHHcCCCCCcEEEEEC
Confidence 378999987663222 456788888643 443 33211111 001110010000 001 12444 999999
Q ss_pred CCchHHHHhhhcc---CCCCcEEEEeC
Q 002281 764 GDGVILHASNLFR---GAVPPVISFNL 787 (943)
Q Consensus 764 GDGTiL~Aar~~~---~~~~PVLGIN~ 787 (943)
| |+++-+++... ...+|++-|.+
T Consensus 93 G-Gsv~D~ak~~A~~~~rgip~I~IPT 118 (355)
T cd08197 93 G-GVVGNIAGLLAALLFRGIRLVHIPT 118 (355)
T ss_pred C-cHHHHHHHHHHHHhccCCCEEEecC
Confidence 9 99999988753 24678888876
No 221
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=41.35 E-value=57 Score=39.78 Aligned_cols=85 Identities=19% Similarity=0.164 Sum_probs=49.6
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCC---CeEEEEcCChhhhhhcCCCCccceeeeccCccccccCccEEEEEcCCc
Q 002281 690 PRTVLVLKKPGPALMEEAKEVASFLYHQE---KMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDG 766 (943)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~~l~~~L~~~~---g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIvLGGDG 766 (943)
.-+|+||.|..+ ....-..+.+.|.+.. ++.|.+..-..+.+.. .. .+...++|.||.-||=|
T Consensus 289 ~v~IalVGKY~~-~~daY~SI~eAL~~ag~~~~~~V~~~~i~se~i~~------------~~-~~~L~~~dGIiLpGG~G 354 (525)
T TIGR00337 289 EVTIGIVGKYVE-LKDSYLSVIEALKHAGAKLDTKVNIKWIDSEDLEE------------EG-AEFLKGVDGILVPGGFG 354 (525)
T ss_pred CcEEEEEeCCcC-CHHHHHHHHHHHHhCccccCCEEEEEEecHHHhhh------------hh-hhhhcCCCEEEeCCCCC
Confidence 358999999864 2222356777775431 2333322211111100 00 11235689999999875
Q ss_pred h-----HHHHhhhccCCCCcEEEEeCC
Q 002281 767 V-----ILHASNLFRGAVPPVISFNLG 788 (943)
Q Consensus 767 T-----iL~Aar~~~~~~~PVLGIN~G 788 (943)
. .+.+++.+...++|++||-+|
T Consensus 355 ~~~~~g~i~ai~~a~e~~iP~LGIClG 381 (525)
T TIGR00337 355 ERGVEGKILAIKYARENNIPFLGICLG 381 (525)
T ss_pred ChhhcChHHHHHHHHHcCCCEEEEcHH
Confidence 4 445677766678999999987
No 222
>CHL00101 trpG anthranilate synthase component 2
Probab=41.33 E-value=22 Score=36.96 Aligned_cols=35 Identities=14% Similarity=0.150 Sum_probs=25.4
Q ss_pred CccEEEEEcCCchHHH-----HhhhccCCCCcEEEEeCCC
Q 002281 755 RVDFVACLGGDGVILH-----ASNLFRGAVPPVISFNLGS 789 (943)
Q Consensus 755 ~~DlVIvLGGDGTiL~-----Aar~~~~~~~PVLGIN~Gs 789 (943)
.+|.||+.||.|..-. .........+|||||-+|.
T Consensus 43 ~~dgiiisgGpg~~~~~~~~~~i~~~~~~~~PiLGIClG~ 82 (190)
T CHL00101 43 NIRHIIISPGPGHPRDSGISLDVISSYAPYIPILGVCLGH 82 (190)
T ss_pred CCCEEEECCCCCChHHCcchHHHHHHhcCCCcEEEEchhH
Confidence 5899999999998633 1112223578999999984
No 223
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=40.95 E-value=42 Score=35.27 Aligned_cols=74 Identities=18% Similarity=0.236 Sum_probs=43.2
Q ss_pred EEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCcccc-ccCccEEEEEcCCchHHH-
Q 002281 693 VLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGVILH- 770 (943)
Q Consensus 693 VlIv~K~~~~~~~~a~~l~~~L~~~~g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~DlVIvLGGDGTiL~- 770 (943)
||||-..+. ....|++||.+ .+.++.+-+.-.. +.+++ ..++|.||..||=|..-.
T Consensus 2 il~idn~ds----ft~nl~~~l~~-~g~~v~v~~~~~~-----------------~~~~~~~~~~d~iIlsgGP~~p~~~ 59 (195)
T PRK07649 2 ILMIDNYDS----FTFNLVQFLGE-LGQELVVKRNDEV-----------------TISDIENMKPDFLMISPGPCSPNEA 59 (195)
T ss_pred EEEEeCCCc----cHHHHHHHHHH-CCCcEEEEeCCCC-----------------CHHHHhhCCCCEEEECCCCCChHhC
Confidence 555554442 34558888865 4666665432110 00111 125799999999987533
Q ss_pred -----HhhhccCCCCcEEEEeCCC
Q 002281 771 -----ASNLFRGAVPPVISFNLGS 789 (943)
Q Consensus 771 -----Aar~~~~~~~PVLGIN~Gs 789 (943)
..+.+. ..+|||||-+|.
T Consensus 60 ~~~~~~i~~~~-~~~PvLGIClG~ 82 (195)
T PRK07649 60 GISMEVIRYFA-GKIPIFGVCLGH 82 (195)
T ss_pred CCchHHHHHhc-CCCCEEEEcHHH
Confidence 233332 468999999984
No 224
>PLN02335 anthranilate synthase
Probab=40.69 E-value=61 Score=34.86 Aligned_cols=78 Identities=12% Similarity=0.152 Sum_probs=45.6
Q ss_pred CCCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCcccc-ccCccEEEEEcCCch
Q 002281 689 TPRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDL-HERVDFVACLGGDGV 767 (943)
Q Consensus 689 ~pk~VlIv~K~~~~~~~~a~~l~~~L~~~~g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~DlVIvLGGDGT 767 (943)
..++|+||--... ....|++||.+ .|+.+.+-+.-. + +.+++ ..++|.||+.||-|.
T Consensus 17 ~~~~ilviD~~ds----ft~~i~~~L~~-~g~~~~v~~~~~--~---------------~~~~~~~~~~d~iVisgGPg~ 74 (222)
T PLN02335 17 QNGPIIVIDNYDS----FTYNLCQYMGE-LGCHFEVYRNDE--L---------------TVEELKRKNPRGVLISPGPGT 74 (222)
T ss_pred ccCcEEEEECCCC----HHHHHHHHHHH-CCCcEEEEECCC--C---------------CHHHHHhcCCCEEEEcCCCCC
Confidence 3467898843332 24457888864 466665543210 0 00111 125799999999985
Q ss_pred HH------HHhhhccCCCCcEEEEeCCC
Q 002281 768 IL------HASNLFRGAVPPVISFNLGS 789 (943)
Q Consensus 768 iL------~Aar~~~~~~~PVLGIN~Gs 789 (943)
.- ...+.+ ...+||+||-+|.
T Consensus 75 p~d~~~~~~~~~~~-~~~~PiLGIClG~ 101 (222)
T PLN02335 75 PQDSGISLQTVLEL-GPLVPLFGVCMGL 101 (222)
T ss_pred hhhccchHHHHHHh-CCCCCEEEecHHH
Confidence 53 333333 3468999999984
No 225
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=40.68 E-value=23 Score=46.96 Aligned_cols=43 Identities=21% Similarity=0.272 Sum_probs=32.1
Q ss_pred cCccEEEEEcCCchHHHHhhhcc-----CCCCcEEEEeC-------C-----CCcccCCC
Q 002281 754 ERVDFVACLGGDGVILHASNLFR-----GAVPPVISFNL-------G-----SLGFLTSH 796 (943)
Q Consensus 754 ~~~DlVIvLGGDGTiL~Aar~~~-----~~~~PVLGIN~-------G-----sLGFLt~~ 796 (943)
-+.|.+|++|||||+-.|+.+.. +..++|+||-- | ++||=|..
T Consensus 195 l~Id~LVvIGGDgS~t~A~~LaEy~~~~g~~I~VIGIPKTIDNDL~g~~tD~S~GFdTA~ 254 (1328)
T PTZ00468 195 LKLHGLVVIGGDDSNTNAAVLAEYFKRNSSSTVVVGCPKTIDGDLKNEVIETSFGYDTAV 254 (1328)
T ss_pred hCCCEEEEECCchHHHHHHHHHHHHHhcCCCeeEEEEeEEEcCCCCCCcCCCCCCHHHHH
Confidence 36899999999999988877543 34589999842 2 67776654
No 226
>PTZ00287 6-phosphofructokinase; Provisional
Probab=39.81 E-value=22 Score=47.50 Aligned_cols=53 Identities=23% Similarity=0.308 Sum_probs=35.9
Q ss_pred CccEEEEEcCCchHHHHhhhcc---CCCCc--EEEEeC-------C-----CCcccCCCCchhHHHHHHHHH
Q 002281 755 RVDFVACLGGDGVILHASNLFR---GAVPP--VISFNL-------G-----SLGFLTSHPFEDYRQDLRQVI 809 (943)
Q Consensus 755 ~~DlVIvLGGDGTiL~Aar~~~---~~~~P--VLGIN~-------G-----sLGFLt~~~~ed~~~~L~~ll 809 (943)
+.|.+|+||||||+-.|+.+.. ..+.| |+||-. | ++||=|..+. +-+++.++.
T Consensus 928 ~ID~LVvIGGDgS~t~A~~LaE~f~~~gi~i~VIGVPkTIDNDL~~~~tD~TiGFDTAv~~--~seaI~nL~ 997 (1419)
T PTZ00287 928 QLNGLVMPGSNVTITEAALLAEYFLEKKIPTSVVGIPLTGSNNLIHELIETCVGFDSSTKV--YASLIGNVL 997 (1419)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHHhcCCCccEEEeCceeeCCCCCCCCcCCCCHHHHHHH--HHHHHHHHH
Confidence 7999999999999988877543 24556 999842 3 6777665432 334444443
No 227
>PF00465 Fe-ADH: Iron-containing alcohol dehydrogenase ; InterPro: IPR001670 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of ethanol to acetaldehyde with the concomitant reduction of NAD. Currently three, structurally and catalytically, different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Iron-containing ADH's have been found in yeast (gene ADH4) [], as well as in Zymomonas mobilis (gene adhB) []. These two iron-containing ADH's are closely related to the following enzymes: Escherichia coli propanediol oxidoreductase (1.1.1.77 from EC) (gene fucO) [], an enzyme involved in the metabolism of fucose and which also seems to contain ferrous ion(s). Clostridium acetobutylicum NADPH- and NADH-dependent butanol dehydrogenases (1.1.1 from EC) (genes adh1, bdhA and bdhB) [], an enzyme which has activity using butanol and ethanol as substrates. E. coli adhE [], an iron-dependent enzyme which harbor three different activities: alcohol dehydrogenase, acetaldehyde dehydrogenase (acetylating) (1.2.1.10 from EC) and pyruvate-formate-lyase deactivase. Bacterial glycerol dehydrogenase (1.1.1.6 from EC) (gene gldA or dhaD) []. Clostridium kluyveri NAD-dependent 4-hydroxybutyrate dehydrogenase (4hbd) (1.1.1.61 from EC). Citrobacter freundii and Klebsiella pneumoniae 1,3-propanediol dehydrogenase (1.1.1.202 from EC) (gene dhaT). Bacillus methanolicus NAD-dependent methanol dehydrogenase (1.1.1.244 from EC) []. E. coli and Salmonella typhimurium ethanolamine utilization protein eutG. E. coli hypothetical protein yiaY. ; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1RRM_A 2BL4_A 2BI4_A 3BFJ_R 1KQ3_A 1JQ5_A 1JPU_A 1JQA_A 3JZD_A 3UHJ_A ....
Probab=39.64 E-value=19 Score=40.88 Aligned_cols=76 Identities=20% Similarity=0.222 Sum_probs=43.2
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccccccCccEEEEEcCCchHHH
Q 002281 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILH 770 (943)
Q Consensus 691 k~VlIv~K~~~~~~~~a~~l~~~L~~~~g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIvLGGDGTiL~ 770 (943)
++++||.-+.-.......++.+.|.+ .++++.+-.++.. .+....+.... ..-...++|+||.||| |+.+.
T Consensus 22 gr~lvVt~~~~~~~~~~~~v~~~L~~-~~i~~~~~~~~~~----~p~~~~v~~~~---~~~~~~~~D~IIaiGG-GS~~D 92 (366)
T PF00465_consen 22 GRVLVVTDPSLSKSGLVDRVLDALEE-AGIEVQVFDGVGP----NPTLEDVDEAA---EQARKFGADCIIAIGG-GSVMD 92 (366)
T ss_dssp TEEEEEEEHHHHHHTHHHHHHHHHHH-TTCEEEEEEEESS----S-BHHHHHHHH---HHHHHTTSSEEEEEES-HHHHH
T ss_pred CCEEEEECchHHhCccHHHHHHHHhh-CceEEEEEecCCC----CCcHHHHHHHH---HHHHhcCCCEEEEcCC-CCcCc
Confidence 48999986522223356788888854 5777755433211 11110000000 0001247899999999 99999
Q ss_pred Hhhhc
Q 002281 771 ASNLF 775 (943)
Q Consensus 771 Aar~~ 775 (943)
+++..
T Consensus 93 ~aK~v 97 (366)
T PF00465_consen 93 AAKAV 97 (366)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98864
No 228
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=39.41 E-value=96 Score=32.65 Aligned_cols=98 Identities=16% Similarity=0.184 Sum_probs=54.0
Q ss_pred EEEEEecCC----hhHHHHH-HHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccccccCccEEEEEcCCc
Q 002281 692 TVLVLKKPG----PALMEEA-KEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDG 766 (943)
Q Consensus 692 ~VlIv~K~~----~~~~~~a-~~l~~~L~~~~g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIvLGGDG 766 (943)
+||||.+.. ......+ ..+...|.+..+++|.+..+... +. .+..+++|+||.....|
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~~~~~~v~~~~~~~~-~~----------------~~~L~~~Dvvv~~~~~~ 63 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEESEGFEVTVTEDPDD-LT----------------PENLKGYDVVVFYNTGG 63 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHHTTCEEEEECCSGGC-TS----------------HHCHCT-SEEEEE-SSC
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhccCCCEEEEEEeCccc-CC----------------hhHhcCCCEEEEECCCC
Confidence 689998883 2222333 44555554367899987666321 10 11246899999998887
Q ss_pred hH-----HHHhhhccCCCCcEEEEe-CCCCcccCCCCchhHHHHHHHHHcCCC
Q 002281 767 VI-----LHASNLFRGAVPPVISFN-LGSLGFLTSHPFEDYRQDLRQVIYGNN 813 (943)
Q Consensus 767 Ti-----L~Aar~~~~~~~PVLGIN-~GsLGFLt~~~~ed~~~~L~~ll~G~~ 813 (943)
+- ..+.+.+...+.+++||+ .+...|- +. ....+++-|.+
T Consensus 64 ~~l~~~~~~al~~~v~~Ggglv~lH~~~~~~~~---~~----~~~~~l~Gg~f 109 (217)
T PF06283_consen 64 DELTDEQRAALRDYVENGGGLVGLHGAATDSFP---DW----PEYNELLGGYF 109 (217)
T ss_dssp CGS-HHHHHHHHHHHHTT-EEEEEGGGGGCCHT---T-----HHHHHHHS--S
T ss_pred CcCCHHHHHHHHHHHHcCCCEEEEcccccccch---hH----HHHHHeeCccc
Confidence 53 344444556789999999 4444553 22 23345666654
No 229
>PRK13566 anthranilate synthase; Provisional
Probab=39.13 E-value=86 Score=39.68 Aligned_cols=78 Identities=14% Similarity=0.154 Sum_probs=49.2
Q ss_pred CCCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCCh-hhhhhcCCCCccceeeeccCccccccCccEEEEEcCCch
Q 002281 689 TPRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDV-HDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGV 767 (943)
Q Consensus 689 ~pk~VlIv~K~~~~~~~~a~~l~~~L~~~~g~~V~ve~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIvLGGDGT 767 (943)
..++|+||-.-.. ....+++||.+ .|.+|.+-+.- .... . + ..++|.||+.||-|+
T Consensus 525 ~g~~IlvID~~ds----f~~~l~~~Lr~-~G~~v~vv~~~~~~~~----------------~-~-~~~~DgVVLsgGpgs 581 (720)
T PRK13566 525 EGKRVLLVDHEDS----FVHTLANYFRQ-TGAEVTTVRYGFAEEM----------------L-D-RVNPDLVVLSPGPGR 581 (720)
T ss_pred CCCEEEEEECCCc----hHHHHHHHHHH-CCCEEEEEECCCChhH----------------h-h-hcCCCEEEECCCCCC
Confidence 3578999987742 24567888864 57777653321 1100 0 1 135899999999875
Q ss_pred -----HHHHhhhccCCCCcEEEEeCCC
Q 002281 768 -----ILHASNLFRGAVPPVISFNLGS 789 (943)
Q Consensus 768 -----iL~Aar~~~~~~~PVLGIN~Gs 789 (943)
+....+.+...++|||||-+|.
T Consensus 582 p~d~~~~~lI~~a~~~~iPILGIClG~ 608 (720)
T PRK13566 582 PSDFDCKATIDAALARNLPIFGVCLGL 608 (720)
T ss_pred hhhCCcHHHHHHHHHCCCcEEEEehhH
Confidence 3444444445679999999984
No 230
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=38.54 E-value=44 Score=42.79 Aligned_cols=78 Identities=15% Similarity=0.186 Sum_probs=43.2
Q ss_pred CCCEEEEEecCChhHHHHHHHHHHHHhc-CCCeEEEEcCChhhhhhcCCCCccceeeeccCccc-cccCccEEEEEcCCc
Q 002281 689 TPRTVLVLKKPGPALMEEAKEVASFLYH-QEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDG 766 (943)
Q Consensus 689 ~pk~VlIv~K~~~~~~~~a~~l~~~L~~-~~g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~DlVIvLGGDG 766 (943)
..++++||....-.......++.+.|.. ..++.+.+-.++.. .+....+... ... ...++|+||.||| |
T Consensus 479 ~~~~~lvVtd~~~~~~g~~~~v~~~L~~~~~~i~~~~~~~v~~----np~~~~v~~~----~~~~~~~~~D~IIaiGG-G 549 (862)
T PRK13805 479 GKKRAFIVTDRFMVELGYVDKVTDVLKKRENGVEYEVFSEVEP----DPTLSTVRKG----AELMRSFKPDTIIALGG-G 549 (862)
T ss_pred CCCEEEEEECcchhhcchHHHHHHHHhcccCCCeEEEeCCCCC----CcCHHHHHHH----HHHHHhcCCCEEEEeCC-c
Confidence 3478999986443222355677888752 34666554333211 1111111000 000 1247899999999 9
Q ss_pred hHHHHhhhc
Q 002281 767 VILHASNLF 775 (943)
Q Consensus 767 TiL~Aar~~ 775 (943)
+++-+++..
T Consensus 550 SviD~AK~i 558 (862)
T PRK13805 550 SPMDAAKIM 558 (862)
T ss_pred hHHHHHHHH
Confidence 999888765
No 231
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=38.42 E-value=82 Score=35.59 Aligned_cols=94 Identities=15% Similarity=0.085 Sum_probs=50.7
Q ss_pred CCHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCc-EEEEEecC-----CCCCCCHHHHHHHHHHHhcCCCC
Q 002281 275 VTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKV-ELIKIPVE-----VRTAPTMEQVEKFASLVSNSSKK 348 (943)
Q Consensus 275 pT~eDLa~Lk~lGIKTVIDLRse~~ee~~~~a~e~e~~e~~GI-~yIhIPV~-----d~~~Ps~E~v~aFlelL~ds~~~ 348 (943)
.+.+.++...+.+-+.|||-|+.+ +..... .+.......-| --+++|.. +..-.+.+.++.|.+..--..++
T Consensus 158 ~~~~~~~~~~~~~~~~liDaR~~~-rf~G~~-~ep~~~~~GHIPGAiNipw~~~~~~~~~~~~~~~~~~l~~~~gi~~~~ 235 (285)
T COG2897 158 VDATLVADALEVPAVLLIDARSPE-RFRGKE-PEPRDGKAGHIPGAINIPWTDLVDDGGLFKSPEEIARLYADAGIDPDK 235 (285)
T ss_pred CCHHHHHHHhcCCCeEEEecCCHH-HhCCCC-CCCCCCCCCCCCCCcCcCHHHHhcCCCccCcHHHHHHHHHhcCCCCCC
Confidence 345666666666677799999986 211100 00000001111 11233321 11123456677766543225678
Q ss_pred cEEEeCccCCchHHHHHHHHHHh
Q 002281 349 PLYLHSKEGVWRTYAMVSRWRQY 371 (943)
Q Consensus 349 PVLVHC~AGKDRTGALvaLlr~~ 371 (943)
+++++|..|. |+...+..+..+
T Consensus 236 ~vI~yCgsG~-~As~~~~al~~l 257 (285)
T COG2897 236 EVIVYCGSGV-RASVTWLALAEL 257 (285)
T ss_pred CEEEEcCCch-HHHHHHHHHHHh
Confidence 9999999999 888666665543
No 232
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=38.11 E-value=26 Score=44.35 Aligned_cols=44 Identities=16% Similarity=0.249 Sum_probs=31.6
Q ss_pred cCccEEEEEcCCchHHHHhhhc----------------------cCCCCcEEEEeC-------C---CCcccCCCC
Q 002281 754 ERVDFVACLGGDGVILHASNLF----------------------RGAVPPVISFNL-------G---SLGFLTSHP 797 (943)
Q Consensus 754 ~~~DlVIvLGGDGTiL~Aar~~----------------------~~~~~PVLGIN~-------G---sLGFLt~~~ 797 (943)
.++|.+|++|||||+-.|..+. .....+|+||-- | ++||-|..+
T Consensus 96 ~~Id~LvvIGGdgSl~gA~~l~~e~~~l~~el~~~g~i~~~~~~~~~~l~vVGiPkTIDNDl~gTD~TiGfdTAl~ 171 (762)
T cd00764 96 RGITNLCVIGGDGSLTGADLFRSEWPSLLEELVKDGKITEEEVAKYQHLNIVGMVGSIDNDFCGTDMTIGTDSALH 171 (762)
T ss_pred cCCCEEEEeCCchHHHHHHHHHHhhhHHHHHHHhcCcccHHHHhcCCCceEEEeccceeCCCCCCcCCCCHHHHHH
Confidence 4799999999999987765321 123578998832 2 688888654
No 233
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=38.07 E-value=32 Score=39.53 Aligned_cols=76 Identities=21% Similarity=0.258 Sum_probs=40.8
Q ss_pred CCEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccc-cccCccEEEEEcCCchH
Q 002281 690 PRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGVI 768 (943)
Q Consensus 690 pk~VlIv~K~~~~~~~~a~~l~~~L~~~~g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~DlVIvLGGDGTi 768 (943)
.++++||....-.......++.+.|.+ .++++.+-.++.. .|....+.. -.+. ...++|+||.||| |.+
T Consensus 28 ~~~~livt~~~~~~~~~~~~v~~~L~~-~~~~~~~~~~v~~----~p~~~~v~~----~~~~~~~~~~d~IIaiGG-Gsv 97 (377)
T cd08188 28 AKKVLLVSDPGVIKAGWVDRVIESLEE-AGLEYVVFSDVSP----NPRDEEVMA----GAELYLENGCDVIIAVGG-GSP 97 (377)
T ss_pred CCeEEEEeCcchhhCccHHHHHHHHHH-cCCeEEEeCCCCC----CCCHHHHHH----HHHHHHhcCCCEEEEeCC-chH
Confidence 378999976542222245667777753 4555543222210 111100000 0011 1247899999999 999
Q ss_pred HHHhhhc
Q 002281 769 LHASNLF 775 (943)
Q Consensus 769 L~Aar~~ 775 (943)
+-+++..
T Consensus 98 iD~AK~i 104 (377)
T cd08188 98 IDCAKGI 104 (377)
T ss_pred HHHHHHH
Confidence 9998643
No 234
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=36.99 E-value=1.9e+02 Score=30.90 Aligned_cols=80 Identities=18% Similarity=0.188 Sum_probs=51.4
Q ss_pred hhHHHHHHcCCcEEEEcCCCcc--cCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCC-CcEEEeC
Q 002281 278 EGLKWLMEKGYKTIVDIRAERV--KDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSK-KPLYLHS 354 (943)
Q Consensus 278 eDLa~Lk~lGIKTVIDLRse~~--ee~~~~a~e~e~~e~~GI~yIhIPV~d~~~Ps~E~v~aFlelL~ds~~-~PVLVHC 354 (943)
+-++.+++.|++..+++-.... ....+.....+.+...|+..+.++=. ....+++++..++..+.+..+ -|+-+||
T Consensus 119 ~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt-~G~~~P~~v~~li~~l~~~~~~~~~~~H~ 197 (265)
T cd03174 119 EAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKDT-VGLATPEEVAELVKALREALPDVPLGLHT 197 (265)
T ss_pred HHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEechh-cCCcCHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 3466778899999999943331 11111122334566788988887754 346788888888887754433 6777777
Q ss_pred ccCC
Q 002281 355 KEGV 358 (943)
Q Consensus 355 ~AGK 358 (943)
+--.
T Consensus 198 Hn~~ 201 (265)
T cd03174 198 HNTL 201 (265)
T ss_pred CCCC
Confidence 6544
No 235
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=35.71 E-value=1.4e+02 Score=29.00 Aligned_cols=35 Identities=26% Similarity=0.190 Sum_probs=25.6
Q ss_pred CccEEEEEcCCch---------HHHHhhhccCCCCcEEEEeCCC
Q 002281 755 RVDFVACLGGDGV---------ILHASNLFRGAVPPVISFNLGS 789 (943)
Q Consensus 755 ~~DlVIvLGGDGT---------iL~Aar~~~~~~~PVLGIN~Gs 789 (943)
++|++|+.||.+. ++...+.+.....||.+|-.|.
T Consensus 62 ~~D~liVpGg~~~~~~~~~~~~l~~~l~~~~~~~~~I~aic~G~ 105 (142)
T cd03132 62 LFDAVVVPGGAEAAFALAPSGRALHFVTEAFKHGKPIGAVGEGS 105 (142)
T ss_pred hcCEEEECCCccCHHHHccChHHHHHHHHHHhcCCeEEEcCchH
Confidence 5899999999775 3344555555678999998774
No 236
>KOG4228 consensus Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=34.40 E-value=33 Score=44.73 Aligned_cols=93 Identities=20% Similarity=0.186 Sum_probs=53.2
Q ss_pred HhhcCCCcccee----eeeccCCCCCCCcccceeechhh--HHHhhc---cCCccccc----ccccccccccc-------
Q 002281 113 DTLCNPLTGECT----VSYEFTPEEKPLLEDKIVSVLGC--MLSLLN---KGREDVLS----GRSSIMNAYRV------- 172 (943)
Q Consensus 113 ~~~~~~~~~ec~----v~~~~~~~~~~~led~ii~~~~~--~~~~ln---~gr~~v~s----~~~~~~~nf~~------- 172 (943)
.+||=+-+|+|+ --|-|+.|.-.|-.....+.|.. -+..+| +|+.=|-+ ||. +-|.+
T Consensus 680 Rtf~l~~~g~~~~R~v~qfhFt~Wpd~gvPe~~t~lL~f~rrvk~~~p~~aGPiVVHCSAGvGRT---G~fi~iDaml~~ 756 (1087)
T KOG4228|consen 680 RTFALKKQGENPKREVRQFHFTAWPDHGVPETPTGLLKFRRRVKTFNPPDAGPIVVHCSAGVGRT---GCFIVIDAMLDR 756 (1087)
T ss_pred EeeeccccCCCCCceeeeeeeccCCCCCCcccchHHHHHHHHhccCCCcCCCCEEEECCCCCCCc---ceEEEeHHHHHH
Confidence 477888888998 45888888888888888877776 334444 46652211 111 22332
Q ss_pred --ccc-ccccccCCchhhhhhhhhhhhhH---HHHHHHhccC
Q 002281 173 --ADI-SMTEDQLPPLAIFRSEMKRCCES---MHIALENYLT 208 (943)
Q Consensus 173 --~~~-~~~~~~~p~l~l~r~~l~~~~~~---l~~~l~~yl~ 208 (943)
+|. -+.-+..+.|.--|-.|+.+=+. +|.+|..+..
T Consensus 757 ~~~e~~vdiy~~v~~lR~QR~~mVQt~eQYiFi~~AllE~~~ 798 (1087)
T KOG4228|consen 757 LECEGKVDIYGHVKTLRRQRNNMVQTEEQYIFIHEALLEACL 798 (1087)
T ss_pred HHhhCccceechhHHHHhccccccccHHHHHHHHHHHHHHHh
Confidence 111 11124444666666667766554 4556555543
No 237
>KOG1116 consensus Sphingosine kinase, involved in sphingolipid metabolism [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=34.10 E-value=92 Score=38.36 Aligned_cols=73 Identities=18% Similarity=0.248 Sum_probs=43.0
Q ss_pred cCCCEEEEEecCCh---hHHHHHHHHHHHHhcCCC--eEEEEcCCh--hhhhhcCCCCccceeeeccCccccccCccEEE
Q 002281 688 TTPRTVLVLKKPGP---ALMEEAKEVASFLYHQEK--MNILVEPDV--HDIFARIPGFGFVQTFYLQDTSDLHERVDFVA 760 (943)
Q Consensus 688 ~~pk~VlIv~K~~~---~~~~~a~~l~~~L~~~~g--~~V~ve~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~DlVI 760 (943)
+.+++++|+..|.. .+.+..+..++-|...-+ ++|++...- +..+. + .....+.|-||
T Consensus 177 ~r~~~lLV~iNP~gGkGka~~~F~~~v~Pll~~A~i~~evv~T~~~~HArei~--------r-------t~dl~kyDgIv 241 (579)
T KOG1116|consen 177 KRPRRLLVFINPFGGKGKAKKLFKNHVEPLLSEAGISFEVVLTTRPNHAREIV--------R-------TLDLGKYDGIV 241 (579)
T ss_pred CCCccEEEEECCCCCCccHHHHHHhhhhhhhhhcCceEEEEEecCccHHHHHH--------H-------hhhccccceEE
Confidence 35778887777663 366666555555433334 444443321 11111 0 11346789999
Q ss_pred EEcCCchHHHHhhhc
Q 002281 761 CLGGDGVILHASNLF 775 (943)
Q Consensus 761 vLGGDGTiL~Aar~~ 775 (943)
|+||||++-.+..=+
T Consensus 242 ~vsGDGl~hEVlNGL 256 (579)
T KOG1116|consen 242 CVSGDGLLHEVLNGL 256 (579)
T ss_pred EecCCcCHHHhhhcc
Confidence 999999998887743
No 238
>COG2012 RPB5 DNA-directed RNA polymerase, subunit H, RpoH/RPB5 [Transcription]
Probab=33.66 E-value=11 Score=35.00 Aligned_cols=18 Identities=50% Similarity=1.053 Sum_probs=13.7
Q ss_pred CCCCCCcc----------CCCCCchhhH
Q 002281 77 DPSQLPWI----------GPVPGDIAEV 94 (943)
Q Consensus 77 ~~~~~~~~----------~~~~gd~~e~ 94 (943)
.+.||||| |-.||||.++
T Consensus 36 ~~~qLPkI~~~DPva~~lgak~GdvVkI 63 (80)
T COG2012 36 EPEQLPKIKASDPVAKALGAKPGDVVKI 63 (80)
T ss_pred CHHHCCcccccChhHHHccCCCCcEEEE
Confidence 35688886 7789998765
No 239
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=33.45 E-value=1.3e+02 Score=30.87 Aligned_cols=38 Identities=13% Similarity=0.158 Sum_probs=29.5
Q ss_pred cCccEEEEEcCCc---------hHHHHhhhccCCCCcEEEEeCCCCc
Q 002281 754 ERVDFVACLGGDG---------VILHASNLFRGAVPPVISFNLGSLG 791 (943)
Q Consensus 754 ~~~DlVIvLGGDG---------TiL~Aar~~~~~~~PVLGIN~GsLG 791 (943)
+++|+|++.||.+ .++...+.+.....+|.+|-.|..-
T Consensus 65 ~~~D~l~ipGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~~ 111 (196)
T PRK11574 65 GDFDVIVLPGGIKGAECFRDSPLLVETVRQFHRSGRIVAAICAAPAT 111 (196)
T ss_pred CCCCEEEECCCCchhhhhhhCHHHHHHHHHHHHCCCEEEEECHhHHH
Confidence 4689999999964 2566666676778899999999744
No 240
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=32.74 E-value=1.2e+02 Score=33.39 Aligned_cols=79 Identities=16% Similarity=0.140 Sum_probs=49.9
Q ss_pred hHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCC--CcEEEeCcc
Q 002281 279 GLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSK--KPLYLHSKE 356 (943)
Q Consensus 279 DLa~Lk~lGIKTVIDLRse~~ee~~~~a~e~e~~e~~GI~yIhIPV~d~~~Ps~E~v~aFlelL~ds~~--~PVLVHC~A 356 (943)
-++..+++|++..+++-....-.+.+.....+.+...|+..+.++=. ....+++++..++..+....+ -|+-+||+-
T Consensus 114 ~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l~DT-~G~~~P~~v~~lv~~l~~~~~~~~~i~~H~Hn 192 (266)
T cd07944 114 LIKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYIVDS-FGSMYPEDIKRIISLLRSNLDKDIKLGFHAHN 192 (266)
T ss_pred HHHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEEecC-CCCCCHHHHHHHHHHHHHhcCCCceEEEEeCC
Confidence 35667778999998876543111111112233455678888888754 456778888888887754433 688888875
Q ss_pred CC
Q 002281 357 GV 358 (943)
Q Consensus 357 GK 358 (943)
-.
T Consensus 193 ~~ 194 (266)
T cd07944 193 NL 194 (266)
T ss_pred Cc
Confidence 54
No 241
>PF08357 SEFIR: SEFIR domain; InterPro: IPR013568 This domain is found in IL17 receptors (IL17Rs, e.g. Q60943 from SWISSPROT) and SEF proteins (e.g. Q8QHJ9 from SWISSPROT). The latter are feedback inhibitors of FGF signalling and are also thought to be receptors. Due to its similarity to the TIR domain (IPR000157 from INTERPRO), the SEFIR region is thought to be involved in homotypic interactions with other SEFIR/TIR-domain-containing proteins. Thus, SEFs and IL17Rs may be involved in TOLL/IL1R-like signalling pathways [].
Probab=32.57 E-value=52 Score=32.36 Aligned_cols=77 Identities=14% Similarity=0.085 Sum_probs=49.9
Q ss_pred CEEEEEecCChhHH-HHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccccccCccEEEEEcCCchHH
Q 002281 691 RTVLVLKKPGPALM-EEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVIL 769 (943)
Q Consensus 691 k~VlIv~K~~~~~~-~~a~~l~~~L~~~~g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIvLGGDGTiL 769 (943)
++|+|+.-+..+.. +....++++|.+.-|++|+++.-....+. ..+. ..|. ......+|.||+|=--|+.-
T Consensus 1 ~kVfI~Ys~d~~~h~~~V~~la~~L~~~~g~~V~lD~~~~~~i~---~~g~-~~W~----~~~~~~ad~Vliv~S~~~~~ 72 (150)
T PF08357_consen 1 RKVFISYSHDSEEHKEWVLALAEFLRQNCGIDVILDQWELNEIA---RQGP-PRWM----ERQIREADKVLIVCSPGYKE 72 (150)
T ss_pred CeEEEEeCCCCHHHHHHHHHHHHHHHhccCCceeecHHhhcccc---cCCH-HHHH----HHHHhcCCEEEEEeccchhH
Confidence 47999999887654 67789999997655999998764321111 1110 0111 12256789999999988866
Q ss_pred HHhhhc
Q 002281 770 HASNLF 775 (943)
Q Consensus 770 ~Aar~~ 775 (943)
......
T Consensus 73 ~~~~~~ 78 (150)
T PF08357_consen 73 RYDKKA 78 (150)
T ss_pred HHHHhh
Confidence 555544
No 242
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=31.76 E-value=1e+02 Score=33.49 Aligned_cols=36 Identities=28% Similarity=0.325 Sum_probs=28.7
Q ss_pred CccccccCccEEEEEcCCchHHHHhhhccCCCCcEEEEeC
Q 002281 748 DTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNL 787 (943)
Q Consensus 748 ~~~~l~~~~DlVIvLGGDGTiL~Aar~~~~~~~PVLGIN~ 787 (943)
+..++...+|+||+-||-+|+..++.. ++|++-|-.
T Consensus 243 ~~~~~m~~ad~vIs~~G~~t~~Ea~~~----g~P~l~ip~ 278 (318)
T PF13528_consen 243 DFAELMAAADLVISKGGYTTISEALAL----GKPALVIPR 278 (318)
T ss_pred HHHHHHHhCCEEEECCCHHHHHHHHHc----CCCEEEEeC
Confidence 344566889999999999999988765 578887765
No 243
>PF07899 Frigida: Frigida-like protein; InterPro: IPR012474 This family is composed of plant proteins that are similar to FRIGIDA protein expressed by Arabidopsis thaliana (Mouse-ear cress) (Q9FDW0 from SWISSPROT). This protein is probably nuclear and is required for the regulation of flowering time in the late-flowering phenotype. It is known to increase RNA levels of flowering locus C. Allelic variation at the FRIGIDA locus is a major determinant of natural variation in flowering time [].
Probab=30.80 E-value=55 Score=36.95 Aligned_cols=103 Identities=17% Similarity=0.301 Sum_probs=69.1
Q ss_pred HhhhhhhhHHHHHHHHHHHHhhcCCCccceeeeeccCCCCCCCcccceeechhhHHHhhccCCccccccccccccccccc
Q 002281 94 VEAYCRIFRAAERLHAALMDTLCNPLTGECTVSYEFTPEEKPLLEDKIVSVLGCMLSLLNKGREDVLSGRSSIMNAYRVA 173 (943)
Q Consensus 94 ~e~~cr~~~~a~~l~~a~~~~~~~~~~~ec~v~~~~~~~~~~~led~ii~~~~~~~~~ln~gr~~v~s~~~~~~~nf~~~ 173 (943)
.|-+|++|....+-.. +..||-- .||.|+| -|.+-.++++|+. =-...+|+.|..
T Consensus 148 ~del~~Lv~~va~~~~--a~~L~~s----------------Lgl~~k~---~d~V~~LI~~g~~---ieAv~fi~~f~L- 202 (290)
T PF07899_consen 148 EDELLKLVVSVARRKQ--APELCRS----------------LGLSDKM---PDIVEKLIKKGKQ---IEAVRFIYAFGL- 202 (290)
T ss_pred HHHHHHHHHHhcchHh--hHHHHHH----------------cCchhhh---HHHHHHHHHCCCc---cchHHHHHHHcC-
Confidence 3678888887775554 5566632 3677776 4567788999988 445666787764
Q ss_pred ccccccccCCchhhhhhhhhhhhhHHHHHHHhccCCCCCchhhHHHHHHHHhhh
Q 002281 174 DISMTEDQLPPLAIFRSEMKRCCESMHIALENYLTPEDVRSLDVWRKLQRLKNV 227 (943)
Q Consensus 174 ~~~~~~~~~p~l~l~r~~l~~~~~~l~~~l~~yl~p~~~~sl~v~rkLqr~~n~ 227 (943)
.|++||.||.+.-+++..........+==++ ..+.-..-++|.+++.+
T Consensus 203 -----~dkfpPv~lLk~yl~~~k~~~~~~~~~~~~~-~a~~ea~~kel~aL~~v 250 (290)
T PF07899_consen 203 -----VDKFPPVPLLKSYLEDSKKAAKRIRKKGNSS-EAQNEANEKELAALKSV 250 (290)
T ss_pred -----CCCCCCHHHHHHHHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHHHHHH
Confidence 6889999999999988777766555443222 23333444556666654
No 244
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=30.62 E-value=4.2e+02 Score=24.85 Aligned_cols=90 Identities=13% Similarity=0.250 Sum_probs=55.5
Q ss_pred CEEEEEecCChhHHHH-HHHHHHHHhcCCCeEEEEcC-ChhhhhhcCCCCccceeeeccCccccccCccEEEEEcCCchH
Q 002281 691 RTVLVLKKPGPALMEE-AKEVASFLYHQEKMNILVEP-DVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVI 768 (943)
Q Consensus 691 k~VlIv~K~~~~~~~~-a~~l~~~L~~~~g~~V~ve~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIvLGGDGTi 768 (943)
++|+++.-.+-..... +.++-++|.+ +|+++-++. .+.+ + +...+++|+||+-. +
T Consensus 3 ~kILvvCgsG~~TS~m~~~ki~~~l~~-~gi~~~v~~~~~~e-~-----------------~~~~~~~D~iv~t~-~--- 59 (94)
T PRK10310 3 RKIIVACGGAVATSTMAAEEIKELCQS-HNIPVELIQCRVNE-I-----------------ETYMDGVHLICTTA-R--- 59 (94)
T ss_pred CeEEEECCCchhHHHHHHHHHHHHHHH-CCCeEEEEEecHHH-H-----------------hhhcCCCCEEEECC-c---
Confidence 3799999999765554 5677777754 578766554 2211 1 11124579886533 1
Q ss_pred HHHhhhccCCCCcEEEEeCCCCcccCCCCchhHHHHHHHHHcC
Q 002281 769 LHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYG 811 (943)
Q Consensus 769 L~Aar~~~~~~~PVLGIN~GsLGFLt~~~~ed~~~~L~~ll~G 811 (943)
+. ..+ ..+|++-+ ++|++.++.+++++.+.+.++|
T Consensus 60 ~~--~~~--~~ip~~~~----~~llt~~~~~~~~e~i~~~l~~ 94 (94)
T PRK10310 60 VD--RSF--GDIPLVHG----MPFVSGVGIEALQNKILTILQG 94 (94)
T ss_pred cc--ccc--CCCCEEEE----eecccccCHHHHHHHHHHHHcC
Confidence 11 111 14675432 4689999999999988888765
No 245
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=30.54 E-value=3e+02 Score=30.09 Aligned_cols=81 Identities=10% Similarity=0.042 Sum_probs=52.3
Q ss_pred HhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCC-cEEEeCc
Q 002281 277 EEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKK-PLYLHSK 355 (943)
Q Consensus 277 ~eDLa~Lk~lGIKTVIDLRse~~ee~~~~a~e~e~~e~~GI~yIhIPV~d~~~Ps~E~v~aFlelL~ds~~~-PVLVHC~ 355 (943)
.+-++..++.|++..+++-....-.+.+.....+.+...|+..+.++=. ....+++++..+++.+....+. |+-+||+
T Consensus 115 ~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT-~G~~~P~~v~~lv~~l~~~~~~~~l~~H~H 193 (263)
T cd07943 115 EQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYGADCVYVTDS-AGAMLPDDVRERVRALREALDPTPVGFHGH 193 (263)
T ss_pred HHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEEEEcCC-CCCcCHHHHHHHHHHHHHhCCCceEEEEec
Confidence 3456778888999999983322111112122234456678888887643 4567889998888887655454 8888887
Q ss_pred cCC
Q 002281 356 EGV 358 (943)
Q Consensus 356 AGK 358 (943)
--.
T Consensus 194 n~~ 196 (263)
T cd07943 194 NNL 196 (263)
T ss_pred CCc
Confidence 655
No 246
>PRK05380 pyrG CTP synthetase; Validated
Probab=30.41 E-value=1e+02 Score=37.69 Aligned_cols=37 Identities=30% Similarity=0.305 Sum_probs=27.3
Q ss_pred cccCccEEEEEcCCc-----hHHHHhhhccCCCCcEEEEeCC
Q 002281 752 LHERVDFVACLGGDG-----VILHASNLFRGAVPPVISFNLG 788 (943)
Q Consensus 752 l~~~~DlVIvLGGDG-----TiL~Aar~~~~~~~PVLGIN~G 788 (943)
....+|-||+-||=| -.+.+++.....++|+|||-+|
T Consensus 340 ~L~~~DGIIlpGGfG~~~~~g~i~~i~~a~e~~iPiLGIClG 381 (533)
T PRK05380 340 LLKGVDGILVPGGFGERGIEGKILAIRYARENNIPFLGICLG 381 (533)
T ss_pred HhhcCCEEEecCCCCccccccHHHHHHHHHHCCCcEEEEchH
Confidence 346789999999843 2455666666678999999887
No 247
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=29.00 E-value=77 Score=35.76 Aligned_cols=59 Identities=20% Similarity=0.135 Sum_probs=40.7
Q ss_pred CccccccCccEEEEEcCCchHHHHhhhccCCCCcEEEEeCC-------------CCcccCC---CCchhHHHHHHHHHc
Q 002281 748 DTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLG-------------SLGFLTS---HPFEDYRQDLRQVIY 810 (943)
Q Consensus 748 ~~~~l~~~~DlVIvLGGDGTiL~Aar~~~~~~~PVLGIN~G-------------sLGFLt~---~~~ed~~~~L~~ll~ 810 (943)
+..++...+|++|+-||=||+..+... ++|++.+-.+ ..|.... ++.+++.+++++++.
T Consensus 297 p~~~ll~~~d~~I~hgG~~t~~eal~~----GvP~v~~P~~~dQ~~~a~~~~~~G~g~~l~~~~~~~~~l~~al~~~l~ 371 (401)
T cd03784 297 PHDWLLPRCAAVVHHGGAGTTAAALRA----GVPQLVVPFFGDQPFWAARVAELGAGPALDPRELTAERLAAALRRLLD 371 (401)
T ss_pred CHHHHhhhhheeeecCCchhHHHHHHc----CCCEEeeCCCCCcHHHHHHHHHCCCCCCCCcccCCHHHHHHHHHHHhC
Confidence 345567789999999999999998764 5788877432 1233222 245667777777765
No 248
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=28.34 E-value=58 Score=36.86 Aligned_cols=34 Identities=15% Similarity=0.170 Sum_probs=27.4
Q ss_pred cccccCccEEEEEcCCchHHHHhhhccCCCCcEEEEeC
Q 002281 750 SDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNL 787 (943)
Q Consensus 750 ~~l~~~~DlVIvLGGDGTiL~Aar~~~~~~~PVLGIN~ 787 (943)
.++...+|++|+-||-||++.++.. ++|++.+-.
T Consensus 286 ~~ll~~~~~~I~hgG~~t~~Eal~~----G~P~v~~p~ 319 (392)
T TIGR01426 286 LEILKKADAFITHGGMNSTMEALFN----GVPMVAVPQ 319 (392)
T ss_pred HHHHhhCCEEEECCCchHHHHHHHh----CCCEEecCC
Confidence 3556789999999999999998765 578888653
No 249
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=28.25 E-value=3.5e+02 Score=31.14 Aligned_cols=82 Identities=13% Similarity=0.042 Sum_probs=54.1
Q ss_pred CHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCC--CcEEEe
Q 002281 276 TEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSK--KPLYLH 353 (943)
Q Consensus 276 T~eDLa~Lk~lGIKTVIDLRse~~ee~~~~a~e~e~~e~~GI~yIhIPV~d~~~Ps~E~v~aFlelL~ds~~--~PVLVH 353 (943)
..+-+++.+++|.++.+++-....-.+.+.....+.+...|...+.+.=. .....++++.+.+..+.+..+ -|+-||
T Consensus 116 ~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i~i~DT-~G~~~P~~v~~~v~~l~~~l~~~i~ig~H 194 (333)
T TIGR03217 116 SEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCVYIVDS-AGAMLPDDVRDRVRALKAVLKPETQVGFH 194 (333)
T ss_pred HHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEEEEccC-CCCCCHHHHHHHHHHHHHhCCCCceEEEE
Confidence 35567888999999999996553111111122334566788888777644 456778888888887754433 678888
Q ss_pred CccCC
Q 002281 354 SKEGV 358 (943)
Q Consensus 354 C~AGK 358 (943)
|+...
T Consensus 195 ~Hnnl 199 (333)
T TIGR03217 195 AHHNL 199 (333)
T ss_pred eCCCC
Confidence 87655
No 250
>cd08196 DHQS-like1 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=27.97 E-value=1e+02 Score=35.51 Aligned_cols=77 Identities=10% Similarity=0.126 Sum_probs=38.8
Q ss_pred CEEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccccccCccEEEEEcCCchHHH
Q 002281 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILH 770 (943)
Q Consensus 691 k~VlIv~K~~~~~~~~a~~l~~~L~~~~g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIvLGGDGTiL~ 770 (943)
++++||....-.-. ....+.+.|. +..+.+-++... .+....+......-.+.-..+-|+||.+|| |.++-
T Consensus 20 ~r~lIVtD~~v~~l-~~~~l~~~L~---~~~~~~~~~~e~----~k~l~~v~~~~~~~~~~~~~r~d~iIaiGG-Gsv~D 90 (346)
T cd08196 20 ENDVFIVDANVAEL-YRDRLDLPLD---AAPVIAIDATEE----NKSLEAVSSVIESLRQNGARRNTHLVAIGG-GIIQD 90 (346)
T ss_pred CeEEEEECccHHHH-HHHHHHHHhc---CCeEEEeCCCCC----CCCHHHHHHHHHHHHHcCCCCCcEEEEECC-hHHHH
Confidence 67899988775333 5667777774 233333222110 111111100000000000123399999999 99998
Q ss_pred Hhhhcc
Q 002281 771 ASNLFR 776 (943)
Q Consensus 771 Aar~~~ 776 (943)
++....
T Consensus 91 ~ak~vA 96 (346)
T cd08196 91 VTTFVA 96 (346)
T ss_pred HHHHHH
Confidence 887653
No 251
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=27.75 E-value=28 Score=34.59 Aligned_cols=33 Identities=30% Similarity=0.418 Sum_probs=24.4
Q ss_pred ccccccCccEEEEEcCCchHHHHhhhccCCCCcEEEE
Q 002281 749 TSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISF 785 (943)
Q Consensus 749 ~~~l~~~~DlVIvLGGDGTiL~Aar~~~~~~~PVLGI 785 (943)
..++.+.+|+||+-||=||+..++.. .+|.+-|
T Consensus 66 m~~~m~~aDlvIs~aG~~Ti~E~l~~----g~P~I~i 98 (167)
T PF04101_consen 66 MAELMAAADLVISHAGAGTIAEALAL----GKPAIVI 98 (167)
T ss_dssp HHHHHHHHSEEEECS-CHHHHHHHHC----T--EEEE
T ss_pred HHHHHHHcCEEEeCCCccHHHHHHHc----CCCeecc
Confidence 45667889999999999999998875 4677765
No 252
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=27.75 E-value=5.9e+02 Score=31.90 Aligned_cols=91 Identities=11% Similarity=-0.014 Sum_probs=54.8
Q ss_pred ceEEEcCC-C-----CHhhHHHHHHcCCcEEEE--cCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHH
Q 002281 267 VTFCRGGQ-V-----TEEGLKWLMEKGYKTIVD--IRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKF 338 (943)
Q Consensus 267 ~~LYRSGq-p-----T~eDLa~Lk~lGIKTVID--LRse~~ee~~~~a~e~e~~e~~GI~yIhIPV~d~~~Ps~E~v~aF 338 (943)
..+||-.. + ....++..++.|...... +.....-...+.....+.+...|+..+.|.=. ....++.++..+
T Consensus 110 idv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~Gad~I~IkDt-aG~l~P~~v~~l 188 (596)
T PRK14042 110 VDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAICYTTSPVHTLDNFLELGKKLAEMGCDSIAIKDM-AGLLTPTVTVEL 188 (596)
T ss_pred CCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCc-ccCCCHHHHHHH
Confidence 35667662 2 234578888899887766 43332111112122334566788888777644 345678888887
Q ss_pred HHHHhcCCCCcEEEeCccCC
Q 002281 339 ASLVSNSSKKPLYLHSKEGV 358 (943)
Q Consensus 339 lelL~ds~~~PVLVHC~AGK 358 (943)
+..+.+..+-|+-+||+.-.
T Consensus 189 v~alk~~~~ipi~~H~Hnt~ 208 (596)
T PRK14042 189 YAGLKQATGLPVHLHSHSTS 208 (596)
T ss_pred HHHHHhhcCCEEEEEeCCCC
Confidence 77776555678877776544
No 253
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=27.36 E-value=4.1e+02 Score=28.96 Aligned_cols=78 Identities=8% Similarity=0.079 Sum_probs=47.8
Q ss_pred HHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCCCCcEEEeCccCC
Q 002281 280 LKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEGV 358 (943)
Q Consensus 280 La~Lk~lGIKTVIDLRse~~ee~~~~a~e~e~~e~~GI~yIhIPV~d~~~Ps~E~v~aFlelL~ds~~~PVLVHC~AGK 358 (943)
++..++.|+...+++-....-.+.+.....+.+...|+..+.++=. .....++++..++..+.+..+-|+-+||+--.
T Consensus 116 i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT-~G~~~P~~v~~lv~~l~~~~~~~l~~H~Hn~~ 193 (259)
T cd07939 116 VGRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEAGADRLRFADT-VGILDPFTTYELIRRLRAATDLPLEFHAHNDL 193 (259)
T ss_pred HHHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHHCCCCEEEeCCC-CCCCCHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 4466778998888874433111112112233445678888888755 45667888888877775444467777776544
No 254
>COG0371 GldA Glycerol dehydrogenase and related enzymes [Energy production and conversion]
Probab=27.26 E-value=1.4e+02 Score=34.87 Aligned_cols=41 Identities=20% Similarity=0.238 Sum_probs=31.1
Q ss_pred cCccEEEEEcCCchHHHHhhhccC-CCCcEEEEeC--CCCcccCC
Q 002281 754 ERVDFVACLGGDGVILHASNLFRG-AVPPVISFNL--GSLGFLTS 795 (943)
Q Consensus 754 ~~~DlVIvLGGDGTiL~Aar~~~~-~~~PVLGIN~--GsLGFLt~ 795 (943)
.++|+||-+|| |+++-+++.... .+.|++.|-+ =+=|+-++
T Consensus 83 ~~~d~vIGVGG-Gk~iD~aK~~A~~~~~pfIsvPT~AS~Da~~Sp 126 (360)
T COG0371 83 DGADVVIGVGG-GKTIDTAKAAAYRLGLPFISVPTIASTDAITSP 126 (360)
T ss_pred cCCCEEEEecC-cHHHHHHHHHHHHcCCCEEEecCccccccccCC
Confidence 57899999999 999999998763 5788888754 23344443
No 255
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=27.14 E-value=51 Score=33.80 Aligned_cols=35 Identities=20% Similarity=0.255 Sum_probs=25.6
Q ss_pred CccEEEEEcCCchH------HHHhhhccCCCCcEEEEeCCC
Q 002281 755 RVDFVACLGGDGVI------LHASNLFRGAVPPVISFNLGS 789 (943)
Q Consensus 755 ~~DlVIvLGGDGTi------L~Aar~~~~~~~PVLGIN~Gs 789 (943)
.+|.||..||-|.. +...+.+...+.||+||-+|.
T Consensus 39 ~~dgiil~GG~~~~~~~~~~~~~~~~~~~~~~PvlGIC~G~ 79 (178)
T cd01744 39 DPDGIFLSNGPGDPALLDEAIKTVRKLLGKKIPIFGICLGH 79 (178)
T ss_pred CCCEEEECCCCCChhHhHHHHHHHHHHHhCCCCEEEECHHH
Confidence 57999999997643 334455555679999999883
No 256
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=26.99 E-value=2.1e+02 Score=29.88 Aligned_cols=54 Identities=20% Similarity=0.250 Sum_probs=37.1
Q ss_pred cCccEEEEEcCC----chHHHHhhhccCCCCcEEEEeCC-----CCcccCCCCchhHHHHHHHHHc
Q 002281 754 ERVDFVACLGGD----GVILHASNLFRGAVPPVISFNLG-----SLGFLTSHPFEDYRQDLRQVIY 810 (943)
Q Consensus 754 ~~~DlVIvLGGD----GTiL~Aar~~~~~~~PVLGIN~G-----sLGFLt~~~~ed~~~~L~~ll~ 810 (943)
.++|+||.+|=+ -.+|++.++|. .+-.+.+.-. ..-| .+...+++.+.|+++++
T Consensus 99 g~~DlvlfvG~~~y~~~~~ls~lk~f~--~~~~i~l~~~y~pnA~~Sf-~n~~~~~~~~~l~~~~~ 161 (162)
T TIGR00315 99 GNYDLVLFLGIIYYYLSQMLSSLKHFS--HIVTIAIDKYYQPNADYSF-PNLSKDEYLDYLRKLLA 161 (162)
T ss_pred CCcCEEEEeCCcchHHHHHHHHHHhhc--CcEEEEecCCCCCCCceec-cccCHHHHHHHHHHHhc
Confidence 689999999987 45788888887 4556666521 1222 22346778888888765
No 257
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=25.67 E-value=2.2e+02 Score=30.03 Aligned_cols=52 Identities=25% Similarity=0.226 Sum_probs=36.8
Q ss_pred cCccEEEEEcCC----chHHHHhhhccCCCCcEEEEeCC-------CCcccCCCCchhHHHHHHHHHc
Q 002281 754 ERVDFVACLGGD----GVILHASNLFRGAVPPVISFNLG-------SLGFLTSHPFEDYRQDLRQVIY 810 (943)
Q Consensus 754 ~~~DlVIvLGGD----GTiL~Aar~~~~~~~PVLGIN~G-------sLGFLt~~~~ed~~~~L~~ll~ 810 (943)
.++|+||.+|=+ -.+|++.++|.. +-.+.|.-. +.+++ +.+++.+.|+++++
T Consensus 107 ~~~DlvlfvG~~~~~~~~~l~~lk~f~~--~~~~~~~~~y~~~a~~s~~~~---~~~~~~~~l~~li~ 169 (171)
T PRK00945 107 GNYDLVIFIGVTYYYASQGLSALKHFSP--LKTITIDRYYHPNADMSFPNL---SKEEYLEYLDELID 169 (171)
T ss_pred CCcCEEEEecCCchhHHHHHHHHhhcCC--ceEEEecCCcCCCCceecCCC---CHHHHHHHHHHHHh
Confidence 589999999987 567888888764 345555421 33334 57888999998875
No 258
>PRK10586 putative oxidoreductase; Provisional
Probab=25.60 E-value=70 Score=36.95 Aligned_cols=33 Identities=18% Similarity=0.370 Sum_probs=28.1
Q ss_pred cCccEEEEEcCCchHHHHhhhccC-CCCcEEEEeC
Q 002281 754 ERVDFVACLGGDGVILHASNLFRG-AVPPVISFNL 787 (943)
Q Consensus 754 ~~~DlVIvLGGDGTiL~Aar~~~~-~~~PVLGIN~ 787 (943)
.++|+||.+|| |..+-+++.... ..+|++.|.+
T Consensus 85 ~~~d~iiavGG-Gs~iD~aK~~a~~~~~p~i~vPT 118 (362)
T PRK10586 85 DDRQVVIGVGG-GALLDTAKALARRLGLPFVAIPT 118 (362)
T ss_pred cCCCEEEEecC-cHHHHHHHHHHhhcCCCEEEEeC
Confidence 46899999999 999999998753 4689999985
No 259
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=25.38 E-value=3e+02 Score=29.85 Aligned_cols=99 Identities=21% Similarity=0.315 Sum_probs=60.5
Q ss_pred EEEEEecCChhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccccccCccEEEE----EcCCc-
Q 002281 692 TVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVAC----LGGDG- 766 (943)
Q Consensus 692 ~VlIv~K~~~~~~~~a~~l~~~L~~~~g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIv----LGGDG- 766 (943)
+|+||-.-. .....+..+|. +.|..|....+-.+.+... . .. +|+||. -++||
T Consensus 2 ~ILiveDd~----~i~~~l~~~L~-~~g~~v~~~~~~~~a~~~~---------------~-~~-~dlviLD~~lP~~dG~ 59 (229)
T COG0745 2 RILLVEDDP----ELAELLKEYLE-EEGYEVDVAADGEEALEAA---------------R-EQ-PDLVLLDLMLPDLDGL 59 (229)
T ss_pred eEEEEcCCH----HHHHHHHHHHH-HCCCEEEEECCHHHHHHHH---------------h-cC-CCEEEEECCCCCCCHH
Confidence 455554322 23455666775 4688888766543322110 0 12 677764 36789
Q ss_pred hHHHHhhhccCCCCcEEEEe-------------CCCCcccC-CCCchhHHHHHHHHHcCC
Q 002281 767 VILHASNLFRGAVPPVISFN-------------LGSLGFLT-SHPFEDYRQDLRQVIYGN 812 (943)
Q Consensus 767 TiL~Aar~~~~~~~PVLGIN-------------~GsLGFLt-~~~~ed~~~~L~~ll~G~ 812 (943)
++++-.|......+||+-+. .|-=-|++ +|++.++...++.++...
T Consensus 60 ~~~~~iR~~~~~~~PIi~Lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~ 119 (229)
T COG0745 60 ELCRRLRAKKGSGPPIIVLTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRN 119 (229)
T ss_pred HHHHHHHhhcCCCCcEEEEECCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHHHCcC
Confidence 66666663345678887543 36666676 689999999998888754
No 260
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=24.38 E-value=1.4e+02 Score=32.58 Aligned_cols=36 Identities=25% Similarity=0.310 Sum_probs=25.0
Q ss_pred ccCccEEEEEcCCch-----HHHHhhhccCCCCcEEEEeCC
Q 002281 753 HERVDFVACLGGDGV-----ILHASNLFRGAVPPVISFNLG 788 (943)
Q Consensus 753 ~~~~DlVIvLGGDGT-----iL~Aar~~~~~~~PVLGIN~G 788 (943)
..++|.||.-||-|+ .+.+.+.....++|+|||-+|
T Consensus 53 l~~~dgivl~GG~~~~~~~~~~~~i~~~~~~~~PvlGIClG 93 (235)
T cd01746 53 LKGADGILVPGGFGIRGVEGKILAIKYARENNIPFLGICLG 93 (235)
T ss_pred hccCCEEEECCCCCCcchhhHHHHHHHHHHCCceEEEEEhH
Confidence 356899999898532 233444444567999999987
No 261
>cd08198 DHQS-like2 Dehydroquinate synthase (DHQS)-like. DHQS catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis. Dehydroquinate synthase-like proteins. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. The activity of DHQS requires NAD as cofactor. Proteins of this family share sequence similarity and functional motifs with that of dehydroquinate synthase, but the specific function has not been characterized.
Probab=24.37 E-value=1.4e+02 Score=35.00 Aligned_cols=33 Identities=24% Similarity=0.401 Sum_probs=25.3
Q ss_pred cCccEEEEEcCCchHHHHhhhcc---CCCCcEEEEeC
Q 002281 754 ERVDFVACLGGDGVILHASNLFR---GAVPPVISFNL 787 (943)
Q Consensus 754 ~~~DlVIvLGGDGTiL~Aar~~~---~~~~PVLGIN~ 787 (943)
++.|+||.||| |.++-++.... ...+|.+-|.+
T Consensus 98 ~r~~~IIalGG-G~v~D~ag~vA~~~~rGip~I~IPT 133 (369)
T cd08198 98 DRHSYVIAIGG-GAVLDAVGYAAATAHRGVRLIRIPT 133 (369)
T ss_pred CcCcEEEEECC-hHHHHHHHHHHHHhcCCCCEEEECC
Confidence 34569999999 99999887653 44678877764
No 262
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=24.16 E-value=35 Score=34.77 Aligned_cols=37 Identities=22% Similarity=0.333 Sum_probs=27.7
Q ss_pred ccCccEEEEEcCCch------HHHHhhhccCCCCcEEEEeCCC
Q 002281 753 HERVDFVACLGGDGV------ILHASNLFRGAVPPVISFNLGS 789 (943)
Q Consensus 753 ~~~~DlVIvLGGDGT------iL~Aar~~~~~~~PVLGIN~Gs 789 (943)
..++|.||+.||=|. .+...+.+....+|||||-+|.
T Consensus 40 ~~~~d~iii~Gg~~~~~d~~~~~~~i~~~~~~~~PilGIC~G~ 82 (192)
T PF00117_consen 40 LDDYDGIIISGGPGSPYDIEGLIELIREARERKIPILGICLGH 82 (192)
T ss_dssp TTTSSEEEEECESSSTTSHHHHHHHHHHHHHTTSEEEEETHHH
T ss_pred hcCCCEEEECCcCCccccccccccccccccccceEEEEEeehh
Confidence 467899999999543 4455555556789999999884
No 263
>PRK07567 glutamine amidotransferase; Provisional
Probab=23.79 E-value=58 Score=35.47 Aligned_cols=36 Identities=11% Similarity=-0.061 Sum_probs=24.7
Q ss_pred cCccEEEEEcCCchHH------------------HHhhhccCCCCcEEEEeCCC
Q 002281 754 ERVDFVACLGGDGVIL------------------HASNLFRGAVPPVISFNLGS 789 (943)
Q Consensus 754 ~~~DlVIvLGGDGTiL------------------~Aar~~~~~~~PVLGIN~Gs 789 (943)
+.+|.||+.||-+..- .+.+......+|||||-+|.
T Consensus 50 ~~~dgvIi~Gg~~~~~d~~~~~~pw~~~~~~~i~~~i~~~~~~~~PvLGIC~G~ 103 (242)
T PRK07567 50 DDYSGVIVGGSPFNVSDPAESKSPWQRRVEAELSGLLDEVVARDFPFLGACYGV 103 (242)
T ss_pred hhccEEEEcCCCCcCCCCCCccchHHHHHHHHHHHHHHHHHhcCCCEEEEchhH
Confidence 4689999999964321 12222235679999999985
No 264
>cd00861 ProRS_anticodon_short ProRS Prolyl-anticodon binding domain, short version found predominantly in bacteria. ProRS belongs to class II aminoacyl-tRNA synthetases (aaRS). This alignment contains the anticodon binding domain, which is responsible for specificity in tRNA-binding, so that the activated amino acid is transferred to a ribose 3' OH group of the appropriate tRNA only.
Probab=23.39 E-value=1.8e+02 Score=26.05 Aligned_cols=62 Identities=13% Similarity=0.134 Sum_probs=37.1
Q ss_pred CCEEEEEecCC--hhHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccccccCccEEEEEcCC
Q 002281 690 PRTVLVLKKPG--PALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGD 765 (943)
Q Consensus 690 pk~VlIv~K~~--~~~~~~a~~l~~~L~~~~g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIvLGGD 765 (943)
|..|.|+.-.. .+....+.+++..|.. .|+.|.++.... -++. .+ ...-..++.++|++|.+
T Consensus 1 P~qv~i~p~~~~~~~~~~~a~~la~~Lr~-~g~~v~~d~~~~-~l~k--------~i----~~a~~~g~~~~iiiG~~ 64 (94)
T cd00861 1 PFDVVIIPMNMKDEVQQELAEKLYAELQA-AGVDVLLDDRNE-RPGV--------KF----ADADLIGIPYRIVVGKK 64 (94)
T ss_pred CeEEEEEEcCCCcHHHHHHHHHHHHHHHH-CCCEEEEECCCC-Cccc--------ch----hHHHhcCCCEEEEECCc
Confidence 45677775443 2556778888888864 588888765421 1110 00 01113578999999943
No 265
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=23.12 E-value=4.4e+02 Score=32.00 Aligned_cols=91 Identities=13% Similarity=0.110 Sum_probs=55.9
Q ss_pred ceEEEcC-CCC-----HhhHHHHHHcCCcEEEEcCCCccc--CcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHH
Q 002281 267 VTFCRGG-QVT-----EEGLKWLMEKGYKTIVDIRAERVK--DNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKF 338 (943)
Q Consensus 267 ~~LYRSG-qpT-----~eDLa~Lk~lGIKTVIDLRse~~e--e~~~~a~e~e~~e~~GI~yIhIPV~d~~~Ps~E~v~aF 338 (943)
..++|-. .++ ..-++..++.|..+.+.+.-.... ...|.....+.+...|+..+.|.=. ....+++++..+
T Consensus 119 idi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i~yt~sp~~t~~y~~~~a~~l~~~Gad~I~IkDt-aG~l~P~~v~~L 197 (468)
T PRK12581 119 IDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIAYTTSPVHTLNYYLSLVKELVEMGADSICIKDM-AGILTPKAAKEL 197 (468)
T ss_pred CCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEECCC-CCCcCHHHHHHH
Confidence 4567766 232 344677888898876666543201 1112223344566789988887644 345678888888
Q ss_pred HHHHhcCCCCcEEEeCccCC
Q 002281 339 ASLVSNSSKKPLYLHSKEGV 358 (943)
Q Consensus 339 lelL~ds~~~PVLVHC~AGK 358 (943)
+..+.+..+-|+-+||+.-.
T Consensus 198 v~alk~~~~~pi~~H~Hnt~ 217 (468)
T PRK12581 198 VSGIKAMTNLPLIVHTHATS 217 (468)
T ss_pred HHHHHhccCCeEEEEeCCCC
Confidence 87776555678877766544
No 266
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=23.03 E-value=4.7e+02 Score=30.11 Aligned_cols=82 Identities=12% Similarity=0.033 Sum_probs=53.1
Q ss_pred CHhhHHHHHHcCCcEEEEcCCCcccCcchhhhhHHhhhcCCcEEEEEecCCCCCCCHHHHHHHHHHHhcCC--CCcEEEe
Q 002281 276 TEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSS--KKPLYLH 353 (943)
Q Consensus 276 T~eDLa~Lk~lGIKTVIDLRse~~ee~~~~a~e~e~~e~~GI~yIhIPV~d~~~Ps~E~v~aFlelL~ds~--~~PVLVH 353 (943)
..+-+++.+++|.++.+++-....-.+.+.....+.+...|...+.+.=. .....++++..++..+.+.. +-|+=||
T Consensus 117 ~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i~DT-~G~~~P~~v~~~v~~l~~~l~~~i~ig~H 195 (337)
T PRK08195 117 SEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCVYVVDS-AGALLPEDVRDRVRALRAALKPDTQVGFH 195 (337)
T ss_pred HHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEEEeCCC-CCCCCHHHHHHHHHHHHHhcCCCCeEEEE
Confidence 34557788889999999986553111111122334566778888777544 45677888888888875443 5678777
Q ss_pred CccCC
Q 002281 354 SKEGV 358 (943)
Q Consensus 354 C~AGK 358 (943)
|+-..
T Consensus 196 ~Hnnl 200 (337)
T PRK08195 196 GHNNL 200 (337)
T ss_pred eCCCc
Confidence 77555
No 267
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=22.37 E-value=2e+02 Score=35.52 Aligned_cols=67 Identities=28% Similarity=0.356 Sum_probs=38.3
Q ss_pred EEEEEcCCchH---HHHhhhccC-CCCcE--EEEeCC-----CCcccCCCCchhHHHHHHHHHcCCCCCCceeeeeeeEE
Q 002281 758 FVACLGGDGVI---LHASNLFRG-AVPPV--ISFNLG-----SLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRL 826 (943)
Q Consensus 758 lVIvLGGDGTi---L~Aar~~~~-~~~PV--LGIN~G-----sLGFLt~~~~ed~~~~L~~ll~G~~~v~~~~i~~R~rL 826 (943)
-|++-|||||+ |.+...+.- ..||| +....| +||+=-.+.-|-+...|..+.+|. +.-..|-+|
T Consensus 419 RILaCGGDGTVGWiLStLD~L~l~p~PPvailPLGTGNDLARtlnWGGgytDEPvSkil~~ve~gt-----vVqLDRW~l 493 (1004)
T KOG0782|consen 419 RILACGGDGTVGWILSTLDNLNLPPYPPVAILPLGTGNDLARTLNWGGGYTDEPVSKILQAVEHGT-----VVQLDRWRL 493 (1004)
T ss_pred EEEEecCCCceeehhhhhhhcCCCCCCCeeEeecCCcchHHHhcccCCCcCcchHHHHHHHHhcCc-----EEeeeeeee
Confidence 36788999995 555555543 23454 333333 233333333444666777888886 123457777
Q ss_pred EEE
Q 002281 827 CCE 829 (943)
Q Consensus 827 ~~~ 829 (943)
.++
T Consensus 494 hvE 496 (1004)
T KOG0782|consen 494 HVE 496 (1004)
T ss_pred ccc
Confidence 665
No 268
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=22.27 E-value=3.5e+02 Score=27.19 Aligned_cols=22 Identities=5% Similarity=-0.016 Sum_probs=15.1
Q ss_pred CCCcEEEeCccCCchHHHHHHHH
Q 002281 346 SKKPLYLHSKEGVWRTYAMVSRW 368 (943)
Q Consensus 346 ~~~PVLVHC~AGKDRTGALvaLl 368 (943)
.+.|++++|..|. ++..++..+
T Consensus 48 ~~~~vVv~c~~g~-~a~~aa~~L 69 (145)
T cd01535 48 AAERYVLTCGSSL-LARFAAADL 69 (145)
T ss_pred CCCCEEEEeCCCh-HHHHHHHHH
Confidence 4679999999975 555444343
No 269
>PRK15138 aldehyde reductase; Provisional
Probab=21.97 E-value=80 Score=36.70 Aligned_cols=74 Identities=19% Similarity=0.296 Sum_probs=39.0
Q ss_pred CCEEEEEecCCh-hHHHHHHHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccc-cccCccEEEEEcCCch
Q 002281 690 PRTVLVLKKPGP-ALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSD-LHERVDFVACLGGDGV 767 (943)
Q Consensus 690 pk~VlIv~K~~~-~~~~~a~~l~~~L~~~~g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~DlVIvLGGDGT 767 (943)
.++++||.-... .......++.+.|. ++++.+-.++. ..|....+... .+. -..++|+||.||| |.
T Consensus 29 ~~~~livt~~~~~~~~g~~~~v~~~L~---~~~~~~f~~v~----~~p~~~~v~~~----~~~~~~~~~D~IIaiGG-GS 96 (387)
T PRK15138 29 DARVLITYGGGSVKKTGVLDQVLDALK---GMDVLEFGGIE----PNPTYETLMKA----VKLVREEKITFLLAVGG-GS 96 (387)
T ss_pred CCeEEEECCCchHHhcCcHHHHHHHhc---CCeEEEECCcc----CCCCHHHHHHH----HHHHHHcCCCEEEEeCC-hH
Confidence 378999964332 23344556766663 44444322221 11111101000 001 1247899999999 99
Q ss_pred HHHHhhhc
Q 002281 768 ILHASNLF 775 (943)
Q Consensus 768 iL~Aar~~ 775 (943)
.+-+++..
T Consensus 97 ~iD~AK~i 104 (387)
T PRK15138 97 VLDGTKFI 104 (387)
T ss_pred HHHHHHHH
Confidence 99888764
No 270
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=21.53 E-value=77 Score=36.04 Aligned_cols=33 Identities=18% Similarity=0.376 Sum_probs=27.7
Q ss_pred cCccEEEEEcCCchHHHHhhhccC-CCCcEEEEeC
Q 002281 754 ERVDFVACLGGDGVILHASNLFRG-AVPPVISFNL 787 (943)
Q Consensus 754 ~~~DlVIvLGGDGTiL~Aar~~~~-~~~PVLGIN~ 787 (943)
.++|+||.||| |+++-+++.... ..+|++.|.+
T Consensus 76 ~~~d~IIavGG-Gs~~D~aK~ia~~~~~p~i~VPT 109 (349)
T cd08550 76 QEADVIIGVGG-GKTLDTAKAVADRLDKPIVIVPT 109 (349)
T ss_pred cCCCEEEEecC-cHHHHHHHHHHHHcCCCEEEeCC
Confidence 47899999999 999999997643 4679998875
No 271
>KOG1510 consensus RNA polymerase II holoenzyme and mediator subcomplex, subunit SURB7/SRB7 [Transcription]
Probab=21.20 E-value=1.2e+02 Score=31.12 Aligned_cols=80 Identities=29% Similarity=0.302 Sum_probs=55.7
Q ss_pred ccCCCCCCCccCCCCCchh------hHhhhhhhhHHHHHHHHHHHHhhcCCCccceeeeeccCCCCCCCcccceeechhh
Q 002281 74 QSNDPSQLPWIGPVPGDIA------EVEAYCRIFRAAERLHAALMDTLCNPLTGECTVSYEFTPEEKPLLEDKIVSVLGC 147 (943)
Q Consensus 74 ~~~~~~~~~~~~~~~gd~~------e~e~~cr~~~~a~~l~~a~~~~~~~~~~~ec~v~~~~~~~~~~~led~ii~~~~~ 147 (943)
+.|++.+||-+-|++-|-. +.|-||++|-+-=-..+-=.|+|-|.+-||=. +-....+.|+-|+-+...+..+
T Consensus 28 ~~~pp~~l~~~e~~~~~~~~~~pa~p~~~~~~~laa~i~~~akqId~LIdsLP~~~~-~~e~Ql~~i~kLq~en~e~~~e 106 (139)
T KOG1510|consen 28 QTHPPVPLPNNEPESPDKVNPIPAEPFEEYAQLLAADIAKKAKQIDTLIDSLPGEEG-SAEAQLEKIKKLQEENEEVALE 106 (139)
T ss_pred hcCCcccCCCCCCCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-CHHHHHHHHHHHHHHHHHHHHH
Confidence 6799999999999999986 88999999975555555556778777777632 2234445566666666666665
Q ss_pred HHHhhcc
Q 002281 148 MLSLLNK 154 (943)
Q Consensus 148 ~~~~ln~ 154 (943)
.-.++.+
T Consensus 107 l~~~v~~ 113 (139)
T KOG1510|consen 107 LEELVSK 113 (139)
T ss_pred HHHHHHH
Confidence 5555444
No 272
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=20.99 E-value=2e+02 Score=32.14 Aligned_cols=44 Identities=23% Similarity=0.274 Sum_probs=31.3
Q ss_pred ccCccEEEEEcCCch-------HHHHhhhccCCCCcEEEEeCC-----CCcccCCC
Q 002281 753 HERVDFVACLGGDGV-------ILHASNLFRGAVPPVISFNLG-----SLGFLTSH 796 (943)
Q Consensus 753 ~~~~DlVIvLGGDGT-------iL~Aar~~~~~~~PVLGIN~G-----sLGFLt~~ 796 (943)
...+|++|+-||+|. ++.-.+.+.....+|.+|..| ..|.|...
T Consensus 73 ~~~~D~livpGg~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~aGlL~~~ 128 (322)
T PRK09393 73 LDRADTIVIPGWRGPDAPVPEPLLEALRAAHARGARLCSICSGVFVLAAAGLLDGR 128 (322)
T ss_pred cCCCCEEEECCCCcccccCCHHHHHHHHHHHHcCCEEEEEcHHHHHHHhccCCCCC
Confidence 357899999999774 555555655667889999887 45655543
No 273
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=20.87 E-value=99 Score=33.84 Aligned_cols=58 Identities=17% Similarity=0.205 Sum_probs=40.9
Q ss_pred cccccCccEEEEEcCCchHHHHhhhccCCCCcEEEEeC-----------------CCCcccCCC---CchhHHHHHHHHH
Q 002281 750 SDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNL-----------------GSLGFLTSH---PFEDYRQDLRQVI 809 (943)
Q Consensus 750 ~~l~~~~DlVIvLGGDGTiL~Aar~~~~~~~PVLGIN~-----------------GsLGFLt~~---~~ed~~~~L~~ll 809 (943)
.++...+|++|+-+|-.|++.|... ++||+.+.. +..|++.+. +.+++.+++..++
T Consensus 247 ~~~l~~ad~~v~~sg~~t~~Eam~~----G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll 322 (350)
T cd03785 247 AAAYAAADLVISRAGASTVAELAAL----GLPAILIPLPYAADDHQTANARALVKAGAAVLIPQEELTPERLAAALLELL 322 (350)
T ss_pred HHHHHhcCEEEECCCHhHHHHHHHh----CCCEEEeecCCCCCCcHHHhHHHHHhCCCEEEEecCCCCHHHHHHHHHHHh
Confidence 3456688999998886777776643 578887643 235777764 5788888888887
Q ss_pred cC
Q 002281 810 YG 811 (943)
Q Consensus 810 ~G 811 (943)
+.
T Consensus 323 ~~ 324 (350)
T cd03785 323 SD 324 (350)
T ss_pred cC
Confidence 53
No 274
>PRK08250 glutamine amidotransferase; Provisional
Probab=20.80 E-value=81 Score=34.17 Aligned_cols=36 Identities=25% Similarity=0.272 Sum_probs=24.6
Q ss_pred cCccEEEEEcCCchH---------------HHHhhhccCCCCcEEEEeCCC
Q 002281 754 ERVDFVACLGGDGVI---------------LHASNLFRGAVPPVISFNLGS 789 (943)
Q Consensus 754 ~~~DlVIvLGGDGTi---------------L~Aar~~~~~~~PVLGIN~Gs 789 (943)
.++|.+|+.||=.+. ....+.+...++||+||-+|.
T Consensus 44 ~~~d~vii~GGp~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~PvlGIC~G~ 94 (235)
T PRK08250 44 DGFDLLIVMGGPQSPRTTREECPYFDSKAEQRLINQAIKAGKAVIGVCLGA 94 (235)
T ss_pred cccCEEEECCCCCChhhccccccccchHHHHHHHHHHHHcCCCEEEEChhH
Confidence 468999999994431 122333335689999999884
No 275
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=20.28 E-value=1.1e+02 Score=33.66 Aligned_cols=67 Identities=12% Similarity=0.112 Sum_probs=37.6
Q ss_pred HHHHHHHhcCCCeEEEEcCChhhhhhcCCCCccceeeeccCccccccCccEEEEEcCCchH-------------------
Q 002281 708 KEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVI------------------- 768 (943)
Q Consensus 708 ~~l~~~L~~~~g~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~DlVIvLGGDGTi------------------- 768 (943)
...++.+.+..++.|++.....+. ...+++.+.+|-+|..||...+
T Consensus 29 ~~y~~~i~~aGg~pv~lp~~~~~~---------------~~~~~~l~~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD 93 (254)
T PRK11366 29 EKYLNAIIHAGGLPIALPHALAEP---------------SLLEQLLPKLDGIYLPGSPSNVQPHLYGENGDEPDADPGRD 93 (254)
T ss_pred HHHHHHHHHCCCEEEEecCCCCCH---------------HHHHHHHHhCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHH
Confidence 345556655677888876332100 0012233457888888873222
Q ss_pred ---HHHhhhccCCCCcEEEEeCCC
Q 002281 769 ---LHASNLFRGAVPPVISFNLGS 789 (943)
Q Consensus 769 ---L~Aar~~~~~~~PVLGIN~Gs 789 (943)
+...+......+|||||-.|.
T Consensus 94 ~~e~~li~~a~~~~~PILGICrG~ 117 (254)
T PRK11366 94 LLSMALINAALERRIPIFAICRGL 117 (254)
T ss_pred HHHHHHHHHHHHCCCCEEEECHhH
Confidence 233333334578999999983
Done!