RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 002281
(943 letters)
>gnl|CDD|215386 PLN02727, PLN02727, NAD kinase.
Length = 986
Score = 1559 bits (4038), Expect = 0.0
Identities = 665/942 (70%), Positives = 752/942 (79%), Gaps = 38/942 (4%)
Query: 7 MQRLSSPATGIL----CSSKLHNNETKLWGFGFRFKLQRRNESVRRRVKLVVSAELSKSF 62
M RLS P TGIL CS KL N++ KL GFGF F +R E ++RR+K VVSAELSKSF
Sbjct: 1 MARLS-PVTGILSSCLCSVKL-NSDGKLLGFGFGF--WQRKEPLKRRLKFVVSAELSKSF 56
Query: 63 SLNLGLDSQVIQSNDPSQLPWIGPVPGDIAEVEAYCRIFRAAERLHAALMDTLCNPLTGE 122
S NLGLDSQ QS D SQLPWIGPVPGDIAEVEAYCRIFRAAERLHAALMDTLCNPLTGE
Sbjct: 57 SSNLGLDSQNFQSRDLSQLPWIGPVPGDIAEVEAYCRIFRAAERLHAALMDTLCNPLTGE 116
Query: 123 CTVSYEFTPEEKPLLEDKIVSVLGCMLSLLNKGREDVLSGRSSIMNAYRVADISMTEDQL 182
C VSY+FT EEKPLLEDKIVSVLGCMLSLLNKGRE+VLSGRSSIM+++R +++S ED+L
Sbjct: 117 CPVSYDFTSEEKPLLEDKIVSVLGCMLSLLNKGREEVLSGRSSIMSSFRGSEVSAMEDKL 176
Query: 183 PPLAIFRSEMKRCCESMHIALENYLTPEDVRSLDVWRKLQRLKNVCYDSGFPRGDDYPIH 242
PPLAIFR EMKRCCES+H+ALENYLTP+D RSLDVWRKLQRLKNVCYD+GFPR DDYP H
Sbjct: 177 PPLAIFRGEMKRCCESLHVALENYLTPDDDRSLDVWRKLQRLKNVCYDAGFPRSDDYPCH 236
Query: 243 TLFANWSPVYLSNSKDDIASKDSEVTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDN 302
TLFANW+PVYLS SK+DI SK+SE F RGGQVTEEGLKWL+EKG+KTIVD+RAE VKDN
Sbjct: 237 TLFANWNPVYLSTSKEDIDSKESEAAFWRGGQVTEEGLKWLLEKGFKTIVDLRAEIVKDN 296
Query: 303 FYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKFASLVSNSSKKPLYLHSKEGVWRTY 362
FY+AA+DDAI SGK+E++KIPVEVRTAP+ EQVEKFASLVS+SSKKP+YLHSKEGVWRT
Sbjct: 297 FYQAAVDDAISSGKIEVVKIPVEVRTAPSAEQVEKFASLVSDSSKKPIYLHSKEGVWRTS 356
Query: 363 AMVSRWRQYMARCASQISGQTITSNDVLLKDSTRTRKLKASAGKFLLEEKYETVKENQDE 422
AMVSRW+QYM R A ++ GQ N G L+++ +++E D+
Sbjct: 357 AMVSRWKQYMTRSAERLLGQNSVVN-----------------GNGKLDQETGSLQETNDK 399
Query: 423 IQTKNGVF-GFGLSVDMDKRNQSNGAYKGLSSVEGVESAKEVDTAVGSLGTTFSKETDPF 481
+ NG G S+ + + AY L S + + + V T V S + F+ E+DP
Sbjct: 400 DSSSNGSESGESCSIKDETGRSNLEAYNSLPSDQSTQQGEMVGTGVESQ-SNFNMESDPL 458
Query: 482 KAQVPPSNFVSKKEMSRFFRSKTTSPPRYFNYQSKRMDVLP----------SEIVSSGPV 531
KAQVPP + SKKEMS+FFRSK PP Y NY+ K + LP S+I + +
Sbjct: 459 KAQVPPCDVFSKKEMSKFFRSKKIYPPTYLNYRRKGFEKLPVPQFTGVTQGSKIDDTDSI 518
Query: 532 SGVAETRYSQWSLSGNNLSPNHQNLPAGSEKSSDNNGYVSAGCSTNGFDRGDRSSMTEAN 591
S + ET S +S N SP +Q+ + KSS+ + + S G + + +
Sbjct: 519 SRLVETGRSNGLVSEKNSSPKYQSSEFDNGKSSNGSSFASDGSLSVASSITNGNPSNNGA 578
Query: 592 LLTSVTKNLDEQVISSSVRDVQRSNGK-PSNSGDDDLGPIVGNMCASSTGVVRVQSRKKA 650
++V+ NL+ V S SVR+ QRSNGK S DD+LG I GNMCAS+TGVVRVQSR+KA
Sbjct: 579 SSSTVSDNLERSVASVSVRESQRSNGKASLGSSDDELGAIEGNMCASATGVVRVQSRRKA 638
Query: 651 EMFLVRTDGFSCNREKVTESSLAFTHPSTQQQMLMWKTTPRTVLVLKKPGPALMEEAKEV 710
EMFLVRTDGFSC REKVTESSLAFTHPSTQQQMLMWK+TP+TVL+LKK G LMEEAKEV
Sbjct: 639 EMFLVRTDGFSCTREKVTESSLAFTHPSTQQQMLMWKSTPKTVLLLKKLGQELMEEAKEV 698
Query: 711 ASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGDGVILH 770
ASFLYHQEKMN+LVEPDVHDIFARIPGFGFVQTFY QDTSDLHERVDFVACLGGDGVILH
Sbjct: 699 ASFLYHQEKMNVLVEPDVHDIFARIPGFGFVQTFYSQDTSDLHERVDFVACLGGDGVILH 758
Query: 771 ASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEI 830
ASNLFRGAVPPV+SFNLGSLGFLTSH FED+RQDLRQVI+GNNTLDGVYITLRMRL CEI
Sbjct: 759 ASNLFRGAVPPVVSFNLGSLGFLTSHYFEDFRQDLRQVIHGNNTLDGVYITLRMRLRCEI 818
Query: 831 FRNGKAMPGKVFDVLNEVVVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYS 890
FRNGKAMPGKVFDVLNEVVVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYS
Sbjct: 819 FRNGKAMPGKVFDVLNEVVVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYS 878
Query: 891 TAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSARLELKV 932
TAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSARLELK+
Sbjct: 879 TAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSARLELKI 920
>gnl|CDD|215505 PLN02935, PLN02935, Bifunctional NADH kinase/NAD(+) kinase.
Length = 508
Score = 267 bits (683), Expect = 2e-79
Identities = 118/261 (45%), Positives = 170/261 (65%), Gaps = 11/261 (4%)
Query: 678 STQQQMLMWKTTPRTVLVLKKP-GPALMEEAKEVASFLYHQEKMNILVEPDVH-DIFARI 735
S++Q L W++ P+TVL++ KP ++ E+ +L Q+ +NI VEP V ++ +
Sbjct: 182 SSKQISLKWESDPQTVLIITKPNSTSVRVLCAEMVRWLREQKGLNIYVEPRVKKELLSES 241
Query: 736 PGFGFVQTFYL-QDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLT 794
F FVQT+ ++ LH +VD V LGGDG +L A+++F+G VPPV+ F++GSLGF+T
Sbjct: 242 SYFNFVQTWEDEKEILLLHTKVDLVITLGGDGTVLWAASMFKGPVPPVVPFSMGSLGFMT 301
Query: 795 SHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNG---KAMPGKVFDVLNEVVVD 851
E YR L ++ G + ITLR RL C I R+ + + VLNEV +D
Sbjct: 302 PFHSEQYRDCLDAILKGP-----ISITLRHRLQCHIIRDAAKNEYETEEPILVLNEVTID 356
Query: 852 RGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPIC 911
RG + +L+ +ECY + +T VQGDG+I++T +GSTAYS AAGGSMVHP VP +LFTPIC
Sbjct: 357 RGISSFLTNLECYCDNSFVTCVQGDGLILSTTSGSTAYSLAAGGSMVHPQVPGILFTPIC 416
Query: 912 PHSLSFRPVILPDSARLELKV 932
PHSLSFRP+ILP+ + ++V
Sbjct: 417 PHSLSFRPLILPEYVTIRVQV 437
>gnl|CDD|223139 COG0061, nadF, NAD kinase [Coenzyme metabolism].
Length = 281
Score = 187 bits (476), Expect = 2e-53
Identities = 78/242 (32%), Positives = 123/242 (50%), Gaps = 20/242 (8%)
Query: 691 RTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDTS 750
+ +V + P ++ AK + FL + + + V+ ++ + +
Sbjct: 2 KVGIVGRPDKPEALKIAKRLYEFL-KFKGVTVEVDQELAEELKDFADYVDDDE------- 53
Query: 751 DLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIY 810
E+ D + LGGDG +L A+ L PV+ NLG LGFLT ++ + L ++
Sbjct: 54 ---EKADLIVVLGGDGTLLRAARLLARLDIPVLGINLGHLGFLTDFEPDELEKALDALLE 110
Query: 811 GNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVVDRGSNPYLSKIECYEHDRLI 870
G I R+ L + R + LNEVV+ RGS + + E Y D
Sbjct: 111 GEYR-----IEERLLLEVSVNRGDI----RRALALNEVVIHRGSPAKMIEFEVYIDDEFF 161
Query: 871 TKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSARLEL 930
+GDG+IV+TPTGSTAY+ +AGG ++HP + + TPICPHSLSFRP++LP S+ + +
Sbjct: 162 ESFRGDGLIVSTPTGSTAYNLSAGGPILHPGLDAIQLTPICPHSLSFRPLVLPSSSTVRI 221
Query: 931 KV 932
+V
Sbjct: 222 EV 223
>gnl|CDD|216543 pfam01513, NAD_kinase, ATP-NAD kinase. Members of this family
include ATP-NAD kinases EC:2.7.1.23, which catalyzes the
phosphorylation of NAD to NADP utilising ATP and other
nucleoside triphosphates as well as inorganic
polyphosphate as a source of phosphorus. Also includes
NADH kinases EC:2.7.1.86.
Length = 243
Score = 169 bits (431), Expect = 1e-47
Identities = 71/182 (39%), Positives = 105/182 (57%), Gaps = 7/182 (3%)
Query: 752 LHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYG 811
+ E VD + LGGDG L A+ L P++ N G+LGFLT E+ + L ++ G
Sbjct: 32 VEEGVDLIVVLGGDGTALDAARLLGDHDIPILGINTGTLGFLTEFSPEEAAKLLDALLEG 91
Query: 812 NNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVVDRGSNPYLSKIECYEHDRLIT 871
I R L + R+ + + V LNEVV+ G + +IE Y L+
Sbjct: 92 E-----YKIEKRELLDVIVRRSKRLLI--VDLALNEVVIIGGPASTMIEIEVYIDGELLE 144
Query: 872 KVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSARLELK 931
++GDG+IV+TPTGSTAYS +AGG ++ P V +L TPICPHSLS RP+++P S++L ++
Sbjct: 145 SIRGDGLIVSTPTGSTAYSLSAGGPIISPGVLAILLTPICPHSLSSRPIVVPSSSKLRIR 204
Query: 932 VK 933
+
Sbjct: 205 LD 206
>gnl|CDD|179379 PRK02155, ppnK, NAD(+)/NADH kinase family protein; Provisional.
Length = 291
Score = 139 bits (352), Expect = 2e-36
Identities = 65/181 (35%), Positives = 98/181 (54%), Gaps = 13/181 (7%)
Query: 755 RVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNT 814
R D LGGDG +L P+I N G LGF+T P +D ++ L +
Sbjct: 63 RADLAVVLGGDGTMLGIGRQLAPYGVPLIGINHGRLGFITDIPLDDMQETLPPM------ 116
Query: 815 LDGVYIT-LRMRLCCEIFRNGKAMPGKVFDVL--NEVVVDRGSNPYLSKIECYEHDRLIT 871
L G Y RM L + R+G+ +F L N+VVV+R + ++ R +
Sbjct: 117 LAGNYEEEERMLLEARVVRDGEP----IFHALAFNDVVVNRSGFSGMVELRVSVDGRFMY 172
Query: 872 KVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSARLELK 931
+ DG+IVATPTGSTAY+ +AGG ++HP +P + PI PH+LS RP++LPD + + ++
Sbjct: 173 NQRSDGLIVATPTGSTAYALSAGGPILHPQLPGWVLVPIAPHTLSNRPIVLPDDSEVAIQ 232
Query: 932 V 932
+
Sbjct: 233 I 233
>gnl|CDD|237601 PRK14076, pnk, inorganic polyphosphate/ATP-NAD kinase; Provisional.
Length = 569
Score = 142 bits (361), Expect = 1e-35
Identities = 69/185 (37%), Positives = 105/185 (56%), Gaps = 15/185 (8%)
Query: 754 ERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNN 813
E + + +GGDG +L AS L G P+I N+G++GFLT E+ + + +I G
Sbjct: 347 EEISHIISIGGDGTVLRASKLVNGEEIPIICINMGTVGFLTEFSKEEIFKAIDSIISGE- 405
Query: 814 TLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVVDRGSNPYLSKI---ECYEHDRLI 870
I R +L I ++G + LNEVV+ NP +K+ E Y + L+
Sbjct: 406 ----YEIEKRTKLSGFILKDGHQN--ILPSALNEVVITT-KNP--AKMLHFEVYVNGELV 456
Query: 871 TKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSARLEL 930
+V+ DG+I++TPTGSTAYS +AGG +V P V + PICP LS RP+++ ++ E+
Sbjct: 457 EEVRADGIIISTPTGSTAYSLSAGGPIVEPTVDGFIIVPICPFKLSSRPLVVSANS--EI 514
Query: 931 KVKLL 935
K+KLL
Sbjct: 515 KIKLL 519
>gnl|CDD|179257 PRK01231, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 295
Score = 137 bits (346), Expect = 1e-35
Identities = 74/244 (30%), Positives = 125/244 (51%), Gaps = 18/244 (7%)
Query: 691 RTVLVLKKPG-PALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQDT 749
R + ++ + G +++E + + FL + IL E + +PG G +QT
Sbjct: 5 RNIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILDE----ETAEVLPGHG-LQTV---SR 56
Query: 750 SDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVI 809
L E D V +GGDG +L A+ PV+ N G LGFLT ++ L +V
Sbjct: 57 KLLGEVCDLVIVVGGDGSLLGAARALARHNVPVLGINRGRLGFLTDIRPDELEFKLAEV- 115
Query: 810 YGNNTLDGVYIT-LRMRLCCEIFRNGKAMPGKVFDVLNEVVVDRGSNPYLSKIECYEHDR 868
LDG Y R L E+ R G+ + D LN+VV+ G + + + E Y +
Sbjct: 116 -----LDGHYQEEERFLLEAEVRRGGEVIGQG--DALNDVVLHPGKSTRMIEFELYIDGQ 168
Query: 869 LITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSARL 928
+ + DG+IV+TPTGSTAY+ + GG ++HP + ++ P+ PH+LS RP+++ ++ +
Sbjct: 169 FVCSQRSDGLIVSTPTGSTAYALSGGGPIMHPKLDAIVLVPMFPHTLSSRPIVVDGNSEI 228
Query: 929 ELKV 932
++ +
Sbjct: 229 KIVI 232
>gnl|CDD|179455 PRK02645, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 305
Score = 135 bits (343), Expect = 3e-35
Identities = 68/207 (32%), Positives = 102/207 (49%), Gaps = 42/207 (20%)
Query: 754 ERVDFVACLGGDGVILHASNLFRGAVPPVISFNLG-SLGFLTSHPFEDYRQDLRQVIYGN 812
E +D LGGDG +L A+ P++S N+G LGFLT HP + + + V +
Sbjct: 56 ELIDLAIVLGGDGTVLAAARHLAPHDIPILSVNVGGHLGFLT-HPRDLLQDE--SVW--D 110
Query: 813 NTLDGVY-ITLRMRLCCEIFRNGKAMPGKV---FDVLNEVVVDRGSNPYLSKIECYEHDR 868
+ Y I RM L +F ++ V + LN+ + + DR
Sbjct: 111 RLQEDRYAIERRMMLQARVFEGDRSNEEPVSESYYALNDFYL-----------KPASEDR 159
Query: 869 LIT-------------KVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSL 915
T + QGDG+IV+TPTGSTAY+ AAGG ++HP + ++ TPICP SL
Sbjct: 160 SPTCILELEIDGEVVDQYQGDGLIVSTPTGSTAYTMAAGGPILHPGIDAIIVTPICPMSL 219
Query: 916 SFRPVILPDSARL--------ELKVKL 934
S RP+++P +R+ +L +KL
Sbjct: 220 SSRPIVIPPGSRVVIWPLGDYDLNIKL 246
>gnl|CDD|179635 PRK03708, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 277
Score = 127 bits (322), Expect = 1e-32
Identities = 67/185 (36%), Positives = 109/185 (58%), Gaps = 13/185 (7%)
Query: 748 DTSDLHE-RVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLR 806
D L E VDF+ +GGDG IL + + +P ++ N+G+LGFLT E+ L
Sbjct: 49 DVLPLEEMDVDFIIAIGGDGTILRIEHKTKKDIP-ILGINMGTLGFLTEVEPEETFFALS 107
Query: 807 QVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVVDRGSNPYLSKIECYEH 866
+++ G+ +I R++L ++ NG+ +P D LNEVV+ G + ++ Y
Sbjct: 108 RLLEGD-----YFIDERIKL--RVYINGENVP----DALNEVVILTGIPGKIIHLKYYVD 156
Query: 867 DRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSA 926
L +V+ DG+I++TPTGSTAY+ +AGG V P + +L P+CP LS RP+++P S+
Sbjct: 157 GELADEVRADGLIISTPTGSTAYAMSAGGPFVDPRLDAILIAPLCPFKLSSRPMVVPSSS 216
Query: 927 RLELK 931
R+++K
Sbjct: 217 RIDVK 221
>gnl|CDD|179862 PRK04539, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 296
Score = 126 bits (318), Expect = 5e-32
Identities = 64/192 (33%), Positives = 99/192 (51%), Gaps = 9/192 (4%)
Query: 742 QTFYLQDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDY 801
++ + ++L + D VA LGGDG L + P+I N G LGFLT P E
Sbjct: 55 VGCHIVNKTELGQYCDLVAVLGGDGTFLSVAREIAPRAVPIIGINQGHLGFLTQIPREYM 114
Query: 802 RQDLRQVIYGNNTLDGVYITL-RMRLCCEIFRNGKAMPGKVFDVLNEVVVDRGSNPYLSK 860
L V L+G Y+ R+ + + R GK + LN+ V+ RG + +
Sbjct: 115 TDKLLPV------LEGKYLAEERILIEAALIREGKTAERAL--ALNDAVLSRGGAGQMIE 166
Query: 861 IECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPV 920
E + + + + DG+IV+TPTGSTAYS AAGG ++ + PICP S++ RP+
Sbjct: 167 FEVFVNREFVYTQRSDGLIVSTPTGSTAYSLAAGGPIMQAGLHAFTLVPICPQSMTNRPI 226
Query: 921 ILPDSARLELKV 932
+PD++ +E+ V
Sbjct: 227 AIPDTSEIEILV 238
>gnl|CDD|179352 PRK01911, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 292
Score = 117 bits (295), Expect = 6e-29
Identities = 55/186 (29%), Positives = 94/186 (50%), Gaps = 8/186 (4%)
Query: 748 DTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQ 807
D +L D V +GGDG L + + P++ N G LGFL + E+ + + +
Sbjct: 57 DNEELDGSADMVISIGGDGTFLRTATYVGNSNIPILGINTGRLGFLATVSKEEIEETIDE 116
Query: 808 VIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVVDRGSNPYLSKIECYEHD 867
++ G+ T++ R ++ N K F LNE+ + + + + Y +
Sbjct: 117 LLNGDYTIE-------ERSLLQLESNPKLFGELNF-ALNEIAILKRDTSSMITVHTYLNG 168
Query: 868 RLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSAR 927
+ DG+IVATPTGST YS + GG ++ P+ + TPI PH+L+ RP+++PD
Sbjct: 169 EYLNSYWADGLIVATPTGSTGYSLSCGGPIIVPDAKSFVITPIAPHNLNVRPLVIPDDTE 228
Query: 928 LELKVK 933
+ L+V+
Sbjct: 229 ITLEVE 234
>gnl|CDD|179241 PRK01185, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 271
Score = 116 bits (293), Expect = 6e-29
Identities = 57/178 (32%), Positives = 95/178 (53%), Gaps = 14/178 (7%)
Query: 756 VDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTL 815
D + +GGDG IL +G P++ N+G LGFLT ++ ++++I G
Sbjct: 53 ADVIITIGGDGTILRTLQRAKG---PILGINMGGLGFLTEIEIDEVGSAIKKLIRGEYF- 108
Query: 816 DGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVVDRGSNPYLSKIECYEHDRLITKVQG 875
I RM+L I NG+ ++ D NE V+ + + + Y + +
Sbjct: 109 ----IDERMKLKVYI--NGE----RLEDCTNEAVIHTDRIAKIRQFKIYYDGHFLDTFKA 158
Query: 876 DGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSARLELKVK 933
DGVIVATPTGST+YS++AGG ++ PN+ M+ + I P+S + V++P + +E+K+
Sbjct: 159 DGVIVATPTGSTSYSSSAGGPILLPNLEGMVISYIAPYSSRPKSVVVPSESTVEIKIA 216
>gnl|CDD|235122 PRK03378, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 292
Score = 115 bits (291), Expect = 2e-28
Identities = 66/189 (34%), Positives = 103/189 (54%), Gaps = 14/189 (7%)
Query: 749 TSDLHE---RVDFVACLGGDGVILHASN-LFRGAVPPVISFNLGSLGFLTSHPFEDYRQD 804
T L E + D +GGDG +L A+ L R + VI N G+LGFLT ++ Q
Sbjct: 54 TGTLAEIGQQADLAIVVGGDGNMLGAARVLARYDIK-VIGINRGNLGFLTDLDPDNALQQ 112
Query: 805 LRQVIYGNNTLDGVYIT-LRMRLCCEIFRNGKAMPGKVFDVLNEVVVDRGSNPYLSKIEC 863
L V L+G YI+ R L ++ R+G ++ +NEVV+ G ++ + E
Sbjct: 113 LSDV------LEGHYISEKRFLLEAQVCRHG--QQKRISTAINEVVLHPGKVAHMIEFEV 164
Query: 864 YEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILP 923
Y D + DG+I++TPTGSTAYS +AGG ++ P++ + P+ PH+LS RP+++
Sbjct: 165 YIDDNFAFSQRSDGLIISTPTGSTAYSLSAGGPILTPSLDAITLVPMFPHTLSARPLVID 224
Query: 924 DSARLELKV 932
S+ + LK
Sbjct: 225 SSSTIRLKF 233
>gnl|CDD|179456 PRK02649, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 305
Score = 107 bits (269), Expect = 2e-25
Identities = 65/183 (35%), Positives = 93/183 (50%), Gaps = 29/183 (15%)
Query: 754 ERVDFVACLGGDGVILHASNLFRGAVP---PVISFNLGSLGFLTSHPFEDYRQDLRQVIY 810
+ F LGGDG +L A R P P+++ N G LGFLT + + QV+
Sbjct: 67 SSMKFAIVLGGDGTVLSA---ARQLAPCGIPLLTINTGHLGFLTEAYLNQLDEAIDQVLA 123
Query: 811 GNNTLDGVYITLRMRLCCEIFRNGK----AMPGKVFDVLNEVVVDRGSNPYLS----KIE 862
G T++ R L + R + A+ LNE+V+ R P S +I
Sbjct: 124 GQYTIE-----ERTMLTVSVMRGDQLRWEAL------SLNEMVLHR--EPLTSMCHFEIA 170
Query: 863 CYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVIL 922
H + + DGVI++TPTGSTAYS +AGG ++ P+VP + TPICPHSL+ R ++
Sbjct: 171 IGRHAPV--DIAADGVILSTPTGSTAYSLSAGGPVITPDVPVLQLTPICPHSLASRALVF 228
Query: 923 PDS 925
DS
Sbjct: 229 SDS 231
>gnl|CDD|172567 PRK14077, pnk, inorganic polyphosphate/ATP-NAD kinase; Provisional.
Length = 287
Score = 104 bits (262), Expect = 9e-25
Identities = 69/255 (27%), Positives = 123/255 (48%), Gaps = 24/255 (9%)
Query: 682 QMLMWKTTPRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFV 741
Q + + + ++ +P +L +E ++ L K+ IL+E + +I PG+G
Sbjct: 2 QNKIDHKNIKKIGLVTRPNVSLDKEILKLQKIL-SIYKVEILLEKESAEILDL-PGYG-- 57
Query: 742 QTFYLQDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDY 801
+L + DF+ LGGDG ++ V+ + G LGFLT ++
Sbjct: 58 -------LDELFKISDFLISLGGDGTLISLCRKAAEYDKFVLGIHAGHLGFLTDITVDEA 110
Query: 802 RQDLRQVIYGNNTLDGVYITLRMRLCCEIF---RNGKAMPGKVFDVLNEVVVDRGSNPYL 858
+ + G ++ Y+ +F + GK + F N+VV+ + + +
Sbjct: 111 EKFFQAFFQGEFEIEKPYML-------SVFLEKKQGKILEKLAF---NDVVISKNNQASM 160
Query: 859 SKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFR 918
+ IE + +++ + GDGVIVATP GSTAY+ +A G +++P + TP+C HSL+ R
Sbjct: 161 AHIEAFLNEKYFNEYFGDGVIVATPAGSTAYNMSANGPIIYPLSQVFILTPVCSHSLTQR 220
Query: 919 PVILPDSARLELKVK 933
P++LP +E K K
Sbjct: 221 PIVLPKGFEVEFKTK 235
>gnl|CDD|235121 PRK03372, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 306
Score = 104 bits (263), Expect = 1e-24
Identities = 75/252 (29%), Positives = 116/252 (46%), Gaps = 32/252 (12%)
Query: 688 TTPRTVLVLKKPG-PALMEEAKEVASFLYHQEKMNILV---EPDVHDIFARIPGFGFVQT 743
T R VL++ G E A+ VA L I V + + D+ A P +
Sbjct: 3 TASRRVLLVAHTGRDEATEAARRVAKQL---GDAGIGVRVLDAEAVDLGATHPAPDDFRA 59
Query: 744 FY-LQDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYR 802
+ D + + V LGGDG IL A+ L R A PV+ NLG +GFL ED
Sbjct: 60 MEVVDADPDAADGCELVLVLGGDGTILRAAELARAADVPVLGVNLGHVGFLAEAEAEDLD 119
Query: 803 QDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVVDRGSNPYLSKIE 862
+ + +V+ + ++ RM L + G+ + + LNE +++ +E
Sbjct: 120 EAVERVVDRDYRVEE-----RMTLDVTVRVGGEI-VWRGW-ALNEASLEKADR--EGMLE 170
Query: 863 CYEHDRLITKVQG--------DGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHS 914
+ +V G DGV+V+TPTGSTAY+ +AGG +V P++ +L P+ H+
Sbjct: 171 V------VLEVDGRPVSSFGCDGVLVSTPTGSTAYAFSAGGPVVWPDLEALLVVPLNAHA 224
Query: 915 LSFRP-VILPDS 925
L RP V+ P S
Sbjct: 225 LFARPLVVSPTS 236
>gnl|CDD|184489 PRK14075, pnk, inorganic polyphosphate/ATP-NAD kinase; Provisional.
Length = 256
Score = 91.7 bits (228), Expect = 2e-20
Identities = 51/180 (28%), Positives = 89/180 (49%), Gaps = 21/180 (11%)
Query: 756 VDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFED---YRQDLRQVIYGN 812
D + +GGDG +L A+ P++ F G LGFL+S+ E+ + +DL+
Sbjct: 42 ADLIIVVGGDGTVLKAAKKVGT---PLVGFKAGRLGFLSSYTLEEIDRFLEDLKN----W 94
Query: 813 NTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVVDRGSNPYLSKIECYEHDRLITK 872
N + L++ ++ G LN+V ++R + + +IE D
Sbjct: 95 NFREEKRWFLKI----------ESELGN-HLALNDVTLERDPSQKMVEIEVSFEDHSSMW 143
Query: 873 VQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPDSARLELKV 932
DGV+++TPTGSTAYS + GG ++ PN TPI P L+ R +++P + ++ ++
Sbjct: 144 FFADGVVISTPTGSTAYSLSLGGPIILPNCEVFEITPIAPQFLATRSIVIPSNEKVTVES 203
>gnl|CDD|167337 PRK02231, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 272
Score = 91.8 bits (228), Expect = 3e-20
Identities = 61/189 (32%), Positives = 99/189 (52%), Gaps = 10/189 (5%)
Query: 745 YLQDTSDLHERVDFVACLGGDGVIL-HASNLFRGAVPPVISFNLGSLGFLTS-HPFEDYR 802
+L ++ +R +GGDG +L A L + +P +I N G+LGFLT P Y
Sbjct: 32 HLASLEEIGQRAQLAIVIGGDGNMLGRARVLAKYDIP-LIGINRGNLGFLTDIDPKNAYE 90
Query: 803 QDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVVDRGSNPYLSKIE 862
Q + G ++ R L +I RNGK + + LNEVV+ ++
Sbjct: 91 QLEACLERGE-----FFVEERFLLEAKIERNGKIIATS--NALNEVVIHPAKIAHMIDFH 143
Query: 863 CYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVIL 922
Y D+ + DG+I++TPTGSTAYS +AGG ++ PN+ + P+ PH+LS RP+++
Sbjct: 144 VYIDDKFAFSQRSDGLIISTPTGSTAYSLSAGGPILTPNLNAIALVPMFPHTLSSRPLVI 203
Query: 923 PDSARLELK 931
+++ L+
Sbjct: 204 DGDSKISLR 212
>gnl|CDD|179876 PRK04761, ppnK, inorganic polyphosphate/ATP-NAD kinase; Reviewed.
Length = 246
Score = 85.6 bits (213), Expect = 2e-18
Identities = 59/187 (31%), Positives = 88/187 (47%), Gaps = 26/187 (13%)
Query: 754 ERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNN 813
E D + LGGDG +L + + + PV N GS+GFL + ED DL + I
Sbjct: 24 EEADVIVALGGDGFMLQTLHRYMNSGKPVYGMNRGSVGFLMNEYSED---DLLERI--AA 78
Query: 814 TLDGVYITLRMRLCCEIFRNGKAMPGKVFDVL--NEVVVDRGSNPYLSKIECYEHDRL-I 870
V LRM + G+V + L NEV + R + +K+ ++ +
Sbjct: 79 AEPTVLHPLRMT--------ATDVSGEVHEALAINEVSLFRQTRQ-AAKLRISIDGKVRM 129
Query: 871 TKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRP-----VILPDS 925
++ DGV+VATP GSTAY+ +A G ++ + TPI P FRP +LP+S
Sbjct: 130 EELVCDGVLVATPAGSTAYNLSAHGPILPLGSNLLALTPISP----FRPRRWRGALLPNS 185
Query: 926 ARLELKV 932
A + V
Sbjct: 186 ATVRFDV 192
>gnl|CDD|235317 PRK04885, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 265
Score = 57.1 bits (139), Expect = 8e-09
Identities = 55/196 (28%), Positives = 94/196 (47%), Gaps = 44/196 (22%)
Query: 757 DFVACLGGDGVILHASNLFRGAVPPV--ISFNLGSLGFLTSHPFEDYR------------ 802
D V +GGDG +L A + + + V + + G LGF T D+R
Sbjct: 37 DIVISVGGDGTLLSAFHRYENQLDKVRFVGVHTGHLGFYT-----DWRPFEVDKLVIALA 91
Query: 803 QDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVVDRGSNPYLSKIE 862
+D QV+ Y L +++ + +G+ + + LNE + R ++ +
Sbjct: 92 KDPGQVVS--------YPLLEVKI---TYEDGEK---EKYLALNEATIKRIEGTLVADV- 136
Query: 863 CYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLS---FR- 918
Y + L + +GDG+ V+TPTGSTAY+ + GG+++HP++ + T I S++ FR
Sbjct: 137 -YINGVLFERFRGDGLCVSTPTGSTAYNKSLGGAVLHPSIEALQLTEIA--SINNRVFRT 193
Query: 919 ---PVILPDSARLELK 931
P+ILP + LK
Sbjct: 194 LGSPLILPKHHTITLK 209
>gnl|CDD|179584 PRK03501, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 264
Score = 55.0 bits (133), Expect = 5e-08
Identities = 35/101 (34%), Positives = 52/101 (51%), Gaps = 10/101 (9%)
Query: 839 GKVFDVLNEVVVDRGSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMV 898
F LNE + R S I+ Y D +GDG++V+TPTGSTAY+ + G++V
Sbjct: 114 STSFYCLNEFSI-RSSIIKTFVIDVYIDDLHFETFRGDGMVVSTPTGSTAYNKSVRGAVV 172
Query: 899 HPNVPCMLFTPICPHSL---SFR----PVILPDSARLELKV 932
P +PC + + SL ++R P IL +L LK+
Sbjct: 173 DPLIPCFQVSELA--SLNNNTYRTLGSPFILSHERKLTLKI 211
>gnl|CDD|100598 PRK00561, ppnK, inorganic polyphosphate/ATP-NAD kinase;
Provisional.
Length = 259
Score = 51.4 bits (123), Expect = 6e-07
Identities = 48/187 (25%), Positives = 83/187 (44%), Gaps = 31/187 (16%)
Query: 757 DFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQDLRQVIYGNNTLD 816
D++ LGGDG + + + A V+ N G LGF TS D Q+ N LD
Sbjct: 35 DYLFVLGGDGFFVSTAANYNCAGCKVVGINTGHLGFYTSFNETDLDQNFA------NKLD 88
Query: 817 GVYIT----LRMRLCCEIFRNGKAMPGKVFDVLNEVVVDRGSNPYLSKIECYEHDRLITK 872
+ T L +++ ++ VLNE+ V + Y I + + K
Sbjct: 89 QLKFTQIDLLEVQI-----------DDQIHLVLNELAVYT-NTAY--PINIFIDNEFWEK 134
Query: 873 VQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICP--HSLSF----RPVILPDSA 926
+G G+++ TGSTA + +A G+++ P + + + P H + P+ILP
Sbjct: 135 YRGSGLLIGPRTGSTALAKSAKGAVIFPRIDVIQIIELNPLLHP-NQTTIQSPIILPIDT 193
Query: 927 RLELKVK 933
++E ++K
Sbjct: 194 KVEFEIK 200
>gnl|CDD|215502 PLN02929, PLN02929, NADH kinase.
Length = 301
Score = 47.0 bits (112), Expect = 2e-05
Identities = 47/185 (25%), Positives = 71/185 (38%), Gaps = 37/185 (20%)
Query: 756 VDFVACLGGDGVILHASNLFRGAVPPVISFNLG------------------SLGFLTSHP 797
VD V +GGDG +L AS+ ++P V+ N S G L +
Sbjct: 65 VDLVVAVGGDGTLLQASHFLDDSIP-VLGVNSDPTQKDEVEEYSDEFDARRSTGHLCAAT 123
Query: 798 FEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVF-DVL----NEVVVDR 852
ED+ Q L V++G + T R+ + NG + DVL + V R
Sbjct: 124 AEDFEQVLDDVLFG-----RLKPTELSRISTVV--NGTLLETPALNDVLIAHPSPAAVSR 176
Query: 853 GSNPYLSKIECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVH---PNVPCMLFTP 909
S + V+ G+ V+T GSTA +AGG + ++ M+ P
Sbjct: 177 FS---FRVGRQGGSSGPLINVRSSGLRVSTAAGSTAAMLSAGGFPMPLLSRDLQYMVREP 233
Query: 910 ICPHS 914
I P
Sbjct: 234 ISPGH 238
>gnl|CDD|225240 COG2365, COG2365, Protein tyrosine/serine phosphatase [Signal
transduction mechanisms].
Length = 249
Score = 34.0 bits (78), Expect = 0.28
Identities = 33/167 (19%), Positives = 54/167 (32%), Gaps = 30/167 (17%)
Query: 203 LENYLTPEDVRSLDVWRK----LQRLKNVCYDSGFPRGDDYPIHTLFANWSPVYLSNSKD 258
N+ P D + K L R + S F P+ S
Sbjct: 6 AVNFRDPGDYATTAGRLKKGIKLLR--SAYLASLSLED---NAPLNFLGIIPIIDYRSGQ 60
Query: 259 DIASKDSEVTFCRGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVE 318
V Q E L L K TI+++R E N D +++
Sbjct: 61 -------PVPV----QPDPELLDALYLK---TIINLRDE---SNTNVELYTDHLINWDKA 103
Query: 319 LIKIPVEVRTAPT----MEQVEKFASLVSNSSKKPLYLHSKEGVWRT 361
I + R+ PT E++ + L++++ P+ +H G RT
Sbjct: 104 AIIMFESYRSFPTREDAAERLVELLQLLADAENGPVLIHCTAGKDRT 150
>gnl|CDD|220976 pfam11091, T4_tail_cap, Tail-tube assembly protein. This tail tube
protein is also referred to as Gp48. It is required for
the assembly and length regulation of the tail tube of
bacteriophage T4.
Length = 348
Score = 34.1 bits (78), Expect = 0.30
Identities = 34/154 (22%), Positives = 55/154 (35%), Gaps = 21/154 (13%)
Query: 549 LSPNHQNLPAGSEKS---SDNNGYVSAGCSTNGFDRGDRSSMTEANLLTSVTKNLDEQVI 605
S + +++ G S S + G VS+ NGF R AN+L +K+ D I
Sbjct: 73 TSGSLRSMRQGLSASSILSKSAGSVSS--KFNGFTRTTFDKEAIANILLPRSKS-DVDTI 129
Query: 606 SSSVRDVQRSNGKPSNSGDDDLGPIVGNMCASSTGVVRVQSRKKAEMFLVRTDGFSCNRE 665
S DVQ S G I+ N +++ T G +
Sbjct: 130 SHEYNDVQDS---LIAKGGGTGTGILSNAASTAVFGALESI----------TQGIMADSG 176
Query: 666 KV--TESSLAFTHPSTQQQMLMWKTTPRTVLVLK 697
+ S + + + W+ TPR++ LK
Sbjct: 177 EQIYNTSRSMYKGADNRTKTFTWQLTPRSLEDLK 210
>gnl|CDD|192589 pfam10444, Nbl1_Borealin_N, Nbl1 / Borealin N terminal. Nbl1 is a
subunit of the conserved CPC, the chromosomal passenger
complex, which regulates mitotic chromosome segregation.
In Fungi and Animalia, this complex consists of the
kinase Aurora B/AIR-2/Ipl1p, INCENP/ICP-1/Sli15p, and
Survivin/BIR-1/Bir1p. In Animalia, a fourth subunit
(Borealin/Dasra/CSC-1) is required for targeting CPC to
centromeres and central spindles. Nbl1 has been shown in
budding yeast to be essential for viability, and for CPC
localisation, stability, integrity, and function. The N
terminus of Borealin is homologous to Nbl1. This family
contains both Nbl1, and the N terminal region of
Borealin.
Length = 59
Score = 29.5 bits (67), Expect = 0.80
Identities = 14/47 (29%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 292 VDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPTMEQVEKF 338
V+ RAER++ + YE + ++E+++IP VR + +EK+
Sbjct: 14 VEERAERLRSH-YENLLKSLRARLEIEILRIPRAVRKMKLRDLLEKY 59
>gnl|CDD|219403 pfam07409, GP46, Phage protein GP46. This family contains GP46
phage proteins (approximately 120 residues long).
Length = 115
Score = 31.1 bits (71), Expect = 0.86
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 277 EEGLKWLMEKGYKTIVDIRAERVKDNFYEAAI 308
E L+WL++ G T +D+ AER N +
Sbjct: 66 REALQWLIDDGVATAIDVTAERPGINRLALTV 97
>gnl|CDD|238776 cd01518, RHOD_YceA, Member of the Rhodanese Homology Domain
superfamily. This CD includes Escherichia coli YceA,
Bacillus subtilis YbfQ, and similar uncharacterized
proteins.
Length = 101
Score = 29.9 bits (68), Expect = 1.8
Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 250 PVYLSNSKDDIASKDSEVTFCRGGQVTEEGLKWLMEKGYK 289
P +L + D + K + +C GG E+ +L E+G+K
Sbjct: 49 PFWLDENLDLLKGKKV-LMYCTGGIRCEKASAYLKERGFK 87
>gnl|CDD|217330 pfam03035, RNA_capsid, Calicivirus putative RNA polymerase/capsid
protein.
Length = 226
Score = 31.2 bits (71), Expect = 1.9
Identities = 22/81 (27%), Positives = 28/81 (34%), Gaps = 15/81 (18%)
Query: 504 TTSPPRYFNYQSKRMDVLPSEIVSSGPVSG-----VAETRYSQWSLSGN-NLSPNHQN-- 555
++ P + S V S+G S A +R S W S N NL P
Sbjct: 122 SSPVPVPPSSSSSASSVSSQSTQSTGLSSSSYSSSSASSRTSSWVRSQNSNLEPFMPGAL 181
Query: 556 -----LPAGSEKSSDNNGYVS 571
P S SS +G VS
Sbjct: 182 QTAWVTPPSSTASS--SGTVS 200
>gnl|CDD|225727 COG3186, COG3186, Phenylalanine-4-hydroxylase [Amino acid transport
and metabolism].
Length = 291
Score = 31.7 bits (72), Expect = 2.0
Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 710 VASFLYHQEKMNILVEPDV-HDIFARIP 736
VA+F+ ++++ L EPD+ HD+F +P
Sbjct: 124 VATFMRTPDELDYLQEPDIFHDVFGHVP 151
>gnl|CDD|130334 TIGR01267, Phe4hydrox_mono, phenylalanine-4-hydroxylase, monomeric
form. This model describes the smaller, monomeric form
of phenylalanine-4-hydroxylase, as found in a small
number of Gram-negative bacteria. The enzyme
irreversibly converts phenylalanine to tryosine and is
known to be the rate-limiting step in phenylalanine
catabolism in some systems. This family is of biopterin
and metal-dependent hydroxylases is related to a family
of longer, multimeric aromatic amino acid hydroxylases
that have additional N-terminal regulatory sequences.
These include tyrosine 3-monooxygenase,
phenylalanine-4-hydroxylase, and tryptophan
5-monoxygenase [Energy metabolism, Amino acids and
amines].
Length = 248
Score = 31.0 bits (70), Expect = 2.2
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 710 VASFLYHQEKMNILVEPDV-HDIFARIP 736
V ++L E+++ L EPD+ HDIF +P
Sbjct: 93 VTTWLRTPEELDYLQEPDIFHDIFGHVP 120
>gnl|CDD|221173 pfam11702, DUF3295, Protein of unknown function (DUF3295). This
family is conserved in fungi but the function is not
known.
Length = 509
Score = 31.4 bits (71), Expect = 2.2
Identities = 36/164 (21%), Positives = 52/164 (31%), Gaps = 12/164 (7%)
Query: 553 HQNLPAGSEKSSDNNGYVSAGCSTNGFDRGDRS-SMTEANLLTSVTKNLDEQVISSSVRD 611
S ++ + S ST + D S S + A TSV + ISSS R
Sbjct: 116 QALESTESTSTTSADCNDSEQSSTPNLNSSDTSTSSSGALPSTSVVRGFSPSHISSSYRS 175
Query: 612 VQRSNGKPSNSGDDDLGPIVGNMCASSTGVVRVQSRKKAEMFLVRTDGFSCNREKVTESS 671
+ N PS P ++ +KK MF + + E E
Sbjct: 176 TAQLNKAPS--------PTKSAEPTAAPQAKPELPKKKQAMFTLGGSS-GDDDEDSFEDR 226
Query: 672 LAFTHPSTQQQMLMWKT--TPRTVLVLKKPGPALMEEAKEVASF 713
++ P L K P+LM K+ ASF
Sbjct: 227 MSSQDPKRSSLPKPKPKMFQLGGSDELGKSLPSLMSPRKKTASF 270
>gnl|CDD|241196 cd12752, RRM1_RBM5, RNA recognition motif 1 in vertebrate
RNA-binding protein 5 (RBM5). This subgroup corresponds
to the RRM1 of RBM5, also termed protein G15, or
putative tumor suppressor LUCA15, or renal carcinoma
antigen NY-REN-9, a known modulator of apoptosis. It may
also act as a tumor suppressor or an RNA splicing
factor. RBM5 shows high sequence similarity to
RNA-binding protein 6 (RBM6 or NY-LU-12 or g16 or
DEF-3). Both, RBM5 and RBM6, specifically bind poly(G)
RNA. They contain two RNA recognition motifs (RRMs),
also termed RBDs (RNA binding domains) or RNPs
(ribonucleoprotein domains), two C2H2-type zinc fingers,
a nuclear localization signal, and a G-patch/D111
domain. .
Length = 87
Score = 29.2 bits (65), Expect = 2.6
Identities = 12/37 (32%), Positives = 19/37 (51%)
Query: 737 GFGFVQTFYLQDTSDLHERVDFVACLGGDGVILHASN 773
GF FV+ ++LQD + E + G + +H SN
Sbjct: 49 GFAFVEFYHLQDATSWMEANQKKLVIQGKTIAMHYSN 85
>gnl|CDD|182971 PRK11112, PRK11112, tRNA pseudouridine synthase C; Provisional.
Length = 257
Score = 30.8 bits (70), Expect = 3.1
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 11/57 (19%)
Query: 629 PIVGNMCASSTGVVRVQSRKKAEMFLVRTDGFSCNREKVTESSLAFTHPSTQQQMLM 685
PI+G+ + G +R Q+R AE F C+R + S L+ THP T + + +
Sbjct: 174 PIIGD---TKHGDLR-QNRSLAE-------HFGCSRLMLHASELSLTHPFTGEPLTI 219
>gnl|CDD|239297 cd02999, PDI_a_ERp44_like, PDIa family, endoplasmic reticulum
protein 44 (ERp44)-like subfamily; composed of
uncharacterized PDI-like eukaryotic proteins containing
only one redox active TRX (a) domain with a CXXS motif,
similar to ERp44. CXXS is still a redox active motif;
however, the mixed disulfide formed with the substrate
is more stable than those formed by CXXC motif proteins.
PDI-related proteins are usually involved in the
oxidative protein folding in the ER by acting as
catalysts and folding assistants. ERp44 is involved in
thiol-mediated retention in the ER.
Length = 100
Score = 28.9 bits (65), Expect = 3.5
Identities = 9/23 (39%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 899 HPNVPCMLF-TPICPHSLSFRPV 920
+ +LF CP S SFRP
Sbjct: 17 REDYTAVLFYASWCPFSASFRPH 39
>gnl|CDD|239464 cd03348, pro_PheOH, Prokaryotic phenylalanine-4-hydroxylase
(pro_PheOH); a member of the biopterin-dependent
aromatic amino acid hydroxylase family of non-heme,
iron(II)-dependent enzymes that also includes the
eukaryotic proteins, phenylalanine-4-hydroxylase
(eu_PheOH), tyrosine hydroxylase (TyrOH) and tryptophan
hydroxylase (TrpOH). PheOH catalyzes the hydroxylation
of L-Phe to L-tyrosine (L-Tyr). It uses
(6R)-L-erythro-5,6,7,8-tetrahydrobiopterin (BH4) as the
physiological electron donor.
Length = 228
Score = 30.3 bits (69), Expect = 4.1
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 709 EVASFLYHQEKMNILVEPDV-HDIFARIP 736
V +F+ E+++ L EPD+ HDIF +P
Sbjct: 92 PVTNFIRRPEELDYLQEPDIFHDIFGHVP 120
>gnl|CDD|234751 PRK00411, cdc6, cell division control protein 6; Reviewed.
Length = 394
Score = 30.6 bits (70), Expect = 4.5
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 291 IVDIRAERVKDNFYEAAIDDAIL 313
I DI +RV++ FY +DD +L
Sbjct: 212 IFDILKDRVEEGFYPGVVDDEVL 234
>gnl|CDD|221392 pfam12043, DUF3527, Domain of unknown function (DUF3527). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is about 120
amino acids in length. This domain has a conserved
CDCGGWD sequence motif.
Length = 277
Score = 30.1 bits (68), Expect = 4.5
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 607 SSVRDVQRSNGKPSNSGDDD--LGPIVGNMCASS 638
SV + ++ + NS D + G IVG M SS
Sbjct: 53 HSVGERKKKSASWLNSKDKNKCSGLIVGQMQVSS 86
>gnl|CDD|239440 cd03324, rTSbeta_L-fuconate_dehydratase, Human rTS beta is encoded
by the rTS gene which, through alternative RNA splicing,
also encodes rTS alpha whose mRNA is complementary to
thymidylate synthase mRNA. rTS beta expression is
associated with the production of small molecules that
appear to mediate the down-regulation of thymidylate
synthase protein by a novel intercellular signaling
mechanism. A member of this family, from Xanthomonas,
has been characterized to be a L-fuconate dehydratase.
rTS beta belongs to the enolase superfamily of enzymes,
characterized by the presence of an enolate anion
intermediate which is generated by abstraction of the
alpha-proton of the carboxylate substrate by an active
site residue and is stabilized by coordination to the
essential Mg2+ ion.
Length = 415
Score = 30.4 bits (69), Expect = 4.7
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Query: 23 LHNNETKLWGFGFRFKLQRRNESVRRRVK----LVVSAELSKSFSLNLGLDSQVIQSNDP 78
L + L G G F + R NE V ++ LVV +L + ++G + + S+
Sbjct: 38 LRTDAAGLKGHGLTFTIGRGNEIVCAAIEALAHLVVGRDLESIVA-DMGKFWRRLTSD-- 94
Query: 79 SQLPWIGPVPGDI 91
SQL WIGP G I
Sbjct: 95 SQLRWIGPEKGVI 107
>gnl|CDD|172549 PRK14057, PRK14057, epimerase; Provisional.
Length = 254
Score = 29.7 bits (66), Expect = 6.3
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 9/67 (13%)
Query: 722 ILVEPDVHDIFARIPGFGFVQTFYLQDTSDLHERVDFVACLGGD----GVILHASNLFRG 777
IL + +V + A PG+G +SDLHERV + CL GD +I+ +L +
Sbjct: 151 ILSDVEVIQLLAVNPGYG-----SKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLTQD 205
Query: 778 AVPPVIS 784
+P +I+
Sbjct: 206 QLPSLIA 212
>gnl|CDD|237020 PRK11913, phhA, phenylalanine 4-monooxygenase; Reviewed.
Length = 275
Score = 29.8 bits (68), Expect = 6.9
Identities = 12/28 (42%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 710 VASFLYHQEKMNILVEPDV-HDIFARIP 736
VA+F+ E+++ L EPD+ HD+F +P
Sbjct: 109 VATFIRRPEELDYLQEPDIFHDVFGHVP 136
>gnl|CDD|215840 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme. Members of
this family are all pyridoxal-phosphate dependent
enzymes. This family includes: serine dehydratase
EC:4.2.1.13 P20132, threonine dehydratase EC:4.2.1.16,
tryptophan synthase beta chain EC:4.2.1.20, threonine
synthase EC:4.2.99.2, cysteine synthase EC:4.2.99.8
P11096, cystathionine beta-synthase EC:4.2.1.22,
1-aminocyclopropane-1-carboxylate deaminase EC:4.1.99.4.
Length = 295
Score = 29.3 bits (66), Expect = 8.6
Identities = 8/38 (21%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 872 KVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTP 909
+G V+ A+ +G+T + AA + + + + P
Sbjct: 48 LERGATVVEAS-SGNTGRALAAAAARL--GLKVTIVVP 82
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 29.6 bits (67), Expect = 9.4
Identities = 32/192 (16%), Positives = 78/192 (40%), Gaps = 19/192 (9%)
Query: 272 GGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAPT 331
G ++TEE K L+E+ + I E + I++ + EL ++ ++
Sbjct: 442 GRELTEEHRKELLEEYTAELKRIEKELKE-------IEEKERKLRKELRELEKVLKKESE 494
Query: 332 MEQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMARCASQISGQTITSNDVLL 391
+ ++++ A + +K L ++ E + + + ++ + + +I L
Sbjct: 495 LIKLKELAEQLKELEEK-LKKYNLEELEKKAEEYEKLKEKLIKLKGEIKS--------LK 545
Query: 392 KDSTRTRKLKASAGKFLLEEKYETVKENQDEIQTKNGVFGFGLSVDMDKRNQS-NGAYKG 450
K+ + +LK LE+K + ++E E+ + GF ++++R + Y
Sbjct: 546 KELEKLEELKKK--LAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNE 603
Query: 451 LSSVEGVESAKE 462
++ E E
Sbjct: 604 YLELKDAEKELE 615
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.133 0.391
Gapped
Lambda K H
0.267 0.0656 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 47,175,157
Number of extensions: 4602819
Number of successful extensions: 3809
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3771
Number of HSP's successfully gapped: 51
Length of query: 943
Length of database: 10,937,602
Length adjustment: 106
Effective length of query: 837
Effective length of database: 6,236,078
Effective search space: 5219597286
Effective search space used: 5219597286
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (28.6 bits)