RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 002281
         (943 letters)



>d1u0ta_ e.52.1.1 (A:) Inorganic polyphosphate/ATP-NAD kinase PpnK
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 302

 Score =  122 bits (305), Expect = 5e-31
 Identities = 63/249 (25%), Positives = 108/249 (43%), Gaps = 13/249 (5%)

Query: 691 RTVLVLKKPG-PALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFGFVQTFYLQ-- 747
           R+VL++   G     E A+ V   L   +    ++  +  D  +       ++   ++  
Sbjct: 1   RSVLLVVHTGRDEATETARRVEKVLGDNKIALRVLSAEAVDRGSLHLAPDDMRAMGVEIE 60

Query: 748 ---DTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFEDYRQD 804
                    +  + V  LGGDG  L A+ L R A  PV+  NLG +GFL     E     
Sbjct: 61  VVDADQHAADGCELVLVLGGDGTFLRAAELARNASIPVLGVNLGRIGFLAEAEAEAIDAV 120

Query: 805 LRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVVDRGSNPYLSKIECY 864
           L  V+  +      Y          + R G          LNEV +++G    +  +   
Sbjct: 121 LEHVVAQD------YRVEDRLTLDVVVRQGG-RIVNRGWALNEVSLEKGPRLGVLGVVVE 173

Query: 865 EHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPVILPD 924
              R ++    DGV+V+TPTGSTAY+ +AGG ++ P++  +L  P   H+L  RP++   
Sbjct: 174 IDGRPVSAFGCDGVLVSTPTGSTAYAFSAGGPVLWPDLEAILVVPNNAHALFGRPMVTSP 233

Query: 925 SARLELKVK 933
            A + ++++
Sbjct: 234 EATIAIEIE 242


>d1z0sa1 e.52.1.1 (A:1-249) Inorganic polyphosphate/ATP-NAD kinase
           PpnK {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 249

 Score =  118 bits (297), Expect = 2e-30
 Identities = 47/193 (24%), Positives = 81/193 (41%), Gaps = 15/193 (7%)

Query: 741 VQTFYLQDTSDLHERVDFVACLGGDGVILHASNLFRGAVPPVISFNLGSLGFLTSHPFED 800
           V+       S+  E  DF+  +GGDG IL      +   PP+   N G +G LT    E+
Sbjct: 25  VEVELFNQPSEELENFDFIVSVGGDGTILRILQKLKR-CPPIFGINTGRVGLLTHASPEN 83

Query: 801 YRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNGKAMPGKVFDVLNEVVVDRGSNPYLSK 860
           +  +L++ +               +   E F             LNE+ V       +  
Sbjct: 84  FEVELKKAV--------------EKFEVERFPRVSCSAMPDVLALNEIAVLSRKPAKMID 129

Query: 861 IECYEHDRLITKVQGDGVIVATPTGSTAYSTAAGGSMVHPNVPCMLFTPICPHSLSFRPV 920
           +        + +++ DG IVAT  GST Y+ +AGG +V P + C +  PI P    ++P 
Sbjct: 130 VALRVDGVEVDRIRCDGFIVATQIGSTGYAFSAGGPVVEPYLECFILIPIAPFRFGWKPY 189

Query: 921 ILPDSARLELKVK 933
           ++    ++E+  +
Sbjct: 190 VVSMERKIEVIAE 202


>d1xria_ c.45.1.1 (A:) Putative phosphatase At1g05000 {Thale cress
           (Arabidopsis thaliana) [TaxId: 3702]}
          Length = 151

 Score = 55.2 bits (132), Expect = 2e-09
 Identities = 20/113 (17%), Positives = 42/113 (37%), Gaps = 9/113 (7%)

Query: 271 RGGQVTEEGLKWLMEKGYKTIVDIRAERVKDNFYEAAIDDAILSGKVELIKIPVEVRTAP 330
           R G        +L   G ++I+ +  E   ++  +    + I      L +  +E    P
Sbjct: 17  RSGFPDSANFSFLQTLGLRSIIYLCPEPYPESNLQFLKSNGI-----RLFQFGIEGNKEP 71

Query: 331 TM----EQVEKFASLVSNSSKKPLYLHSKEGVWRTYAMVSRWRQYMARCASQI 379
            +     ++     ++ +    P+ +H K G  RT  +V   R+    C + I
Sbjct: 72  FVNIPDHKIRMALKVLLDEKNHPVLIHCKRGKHRTGCLVGCLRKLQKWCLTSI 124


>d1or4a_ a.1.1.2 (A:) Heme-based aerotactic transducer HemAT, sensor
           domain {Bacillus subtilis [TaxId: 1423]}
          Length = 169

 Score = 30.3 bits (68), Expect = 0.71
 Identities = 10/68 (14%), Positives = 24/68 (35%), Gaps = 4/68 (5%)

Query: 680 QQQMLMWKTTPRTVLVLKKPGPALMEEAKEVASFLYHQEKMNILVEPDVHDIFARIPGFG 739
           ++Q+ M +     + VL++  P + E    +    Y      +  E  + DI        
Sbjct: 26  KKQLKMVRLGDAELYVLEQLQPLIQENIVNIVDAFYKN----LDHESSLMDIINDHSSVD 81

Query: 740 FVQTFYLQ 747
            ++    +
Sbjct: 82  RLKQTLKR 89


>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus
           thermophilus [TaxId: 274]}
          Length = 315

 Score = 29.3 bits (65), Expect = 2.2
 Identities = 35/178 (19%), Positives = 60/178 (33%), Gaps = 24/178 (13%)

Query: 143 SVLGCMLSLLNKGREDVLSGRS-SIMNAYRVADISMTEDQLPPLAIFRSEMKRCCESMHI 201
            V   +L +L+ GR     GR+    N   +   ++    +          +R  + +  
Sbjct: 140 DVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFK 199

Query: 202 ALENYLTPEDVRSLDVWRKLQRLKNVCYDSGFPRGDDYPIHTLFANWSPVYLSNSKDDIA 261
            L+ +  PE          L RL  +     F       I         + LS  +  +A
Sbjct: 200 VLQQHFRPEF---------LNRLDEIVV---FRPLTKEQIR----QIVEIQLSYLRARLA 243

Query: 262 SKDSEVTFCRGGQVTEEGLKWLMEKGYKTIVDIRA-ERVKDNFYEAAIDDAILSGKVE 318
            K   +        TE    +L E+GY  +   R   RV     E  +   IL+G+V+
Sbjct: 244 EKRISLEL------TEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQKILAGEVK 295


>d1hh1a_ c.52.1.18 (A:) Archaeal Holliday junction resolvase Hjc
           {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
          Length = 132

 Score = 26.7 bits (59), Expect = 7.6
 Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 9/57 (15%)

Query: 312 ILSGKVELIKIPVEVRTAPTM--------EQVEKFASLVSNSSKKPLYLHSKEGVWR 360
           I++ K  +I I +E+++   +        EQ E        S         K GV +
Sbjct: 35  IIALKNGVI-ILIEMKSRKDIEGKIYVRREQAEGIIEFARKSGGSLFLGVKKPGVLK 90


>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae
           (Chlamydomonas reinhardtii) [TaxId: 3055]}
          Length = 198

 Score = 27.0 bits (58), Expect = 8.1
 Identities = 8/40 (20%), Positives = 19/40 (47%)

Query: 795 SHPFEDYRQDLRQVIYGNNTLDGVYITLRMRLCCEIFRNG 834
           ++   +YR ++ + +     LDG+ + +  R    + R G
Sbjct: 159 NNATSEYRIEVVKRLPNLKKLDGMPVDVDEREQANVARGG 198


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.133    0.391 

Gapped
Lambda     K      H
   0.267   0.0506    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,383,904
Number of extensions: 158032
Number of successful extensions: 364
Number of sequences better than 10.0: 1
Number of HSP's gapped: 362
Number of HSP's successfully gapped: 8
Length of query: 943
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 849
Effective length of database: 1,116,976
Effective search space: 948312624
Effective search space used: 948312624
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.3 bits)