BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002283
(943 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XTE|A Chain A, Crystal Structure Of Cisk-Px Domain
Length = 154
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 10/83 (12%)
Query: 682 KEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEGWSLPSPWSSVEKESRKIFG 741
K +TVYK+ V G+ +W V RRY +F LY LK +P +++IFG
Sbjct: 23 KRFTVYKVLVSVGRSEWFVFRRYAEFDKLYNSLKKQFPAMALKIP---------AKRIFG 73
Query: 742 -NVSPLVVAHRSVLIQECLQSIL 763
N P + R + E +Q+++
Sbjct: 74 DNFDPDFIKQRRAGLNEFIQNLV 96
>pdb|1XTN|A Chain A, Crystal Structure Of Cisk-Px Domain With Sulfates
pdb|1XTN|B Chain B, Crystal Structure Of Cisk-Px Domain With Sulfates
Length = 120
Score = 43.1 bits (100), Expect = 8e-04, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 10/83 (12%)
Query: 682 KEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEGWSLPSPWSSVEKESRKIFG 741
K +TVYK+ V G+ +W V RRY +F LY LK P +++ +++IFG
Sbjct: 23 KRFTVYKVLVSVGRSEWFVFRRYAEFDKLYNSLKK---------QFPAMALKIPAKRIFG 73
Query: 742 -NVSPLVVAHRSVLIQECLQSIL 763
N P + R + E +Q+++
Sbjct: 74 DNFDPDFIKQRRAGLNEFIQNLV 96
>pdb|3P0C|A Chain A, Nischarin Px-Domain
pdb|3P0C|B Chain B, Nischarin Px-Domain
Length = 130
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 46/99 (46%), Gaps = 22/99 (22%)
Query: 673 SLSERLVG---VKEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEGWSLPSPW 729
S+ R+VG V YTVY I+V G +W V+ RY DF+ L+ +L + + LP P
Sbjct: 22 SMEARVVGSELVDTYTVYIIQVTDGSHEWTVKHRYSDFHDLHEKLVAERKIDKNLLP-PK 80
Query: 730 SSVEKESRKI------------------FGNVSPLVVAH 750
+ K SR + F V+P V+AH
Sbjct: 81 KIIGKNSRSLVEKREKDLEVYLQKLLAAFPGVTPRVLAH 119
>pdb|2I4K|A Chain A, Solution Structure Of The Px Domain Of Sorting Nexin 1
Length = 128
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 680 GVKEYTVYKIRVWSG-----KDQWEVERRYRDFYTLYRRLKSLSADEGWSLPSP 728
G+ Y YK+ + Q+ V+RR+ DF LY +L + G+ +P P
Sbjct: 17 GMNAYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPP 70
>pdb|4AZ9|A Chain A, Crystal Structure Of Phox Homology Domain Of Human Sorting
Nexin 24
pdb|4AZ9|B Chain B, Crystal Structure Of Phox Homology Domain Of Human Sorting
Nexin 24
Length = 129
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 684 YTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKS 716
YTV+KI V + VE+RY +F+ L+++LK
Sbjct: 41 YTVFKIEVLMNGRKHFVEKRYSEFHALHKKLKK 73
>pdb|3BLE|A Chain A, Crystal Structure Of The Catalytic Domain Of Licms In
Complexed With Malonate
pdb|3BLF|A Chain A, Crystal Structure Of The Catalytic Domain Of Licms In
Complexed With Pyruvate
pdb|3BLI|A Chain A, Crystal Structure Of The Catalytic Domain Of Licms In
Complexed With Pyruvate And Acetyl-Coa
Length = 337
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 20/95 (21%)
Query: 612 SPRARLSQVNQMSQSQISL-----PLRDG----GSTASTSGTDDAYPLTLVPLRIDGVEV 662
S R +V+QM++ + L LRDG G + STS + L L +D VE+
Sbjct: 2 SHMGRSQKVSQMTKVETRLEILDVTLRDGEQTRGVSFSTSEKLNIAKFLLQKLNVDRVEI 61
Query: 663 IGAKQKKGDVSLSERLVGVKEYTVYKIRVWSGKDQ 697
A+ KG++ TV KI W+ +Q
Sbjct: 62 ASARVSKGELE-----------TVQKIMEWAATEQ 85
>pdb|2ETT|A Chain A, Solution Structure Of Human Sorting Nexin 22 Px Domain
Length = 128
Score = 30.4 bits (67), Expect = 4.6, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 682 KEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSL 717
K + V+++ V + V RRY +F+ L++R+K L
Sbjct: 30 KSHMVFRVEVLCSGRRHTVPRRYSEFHALHKRIKKL 65
>pdb|2V14|A Chain A, Kinesin 16b Phox-Homology Domain (Kif16b)
Length = 134
Score = 30.0 bits (66), Expect = 5.7, Method: Composition-based stats.
Identities = 18/74 (24%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
Query: 687 YKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEGWSLPSPWSSVEKESRKIFGNVSPL 746
+++++ + W V RRY F ++ LK A+ +++E +K+FGN
Sbjct: 26 FEVKITVLDETWTVFRRYSRFREXHKTLKLKYAE--------LAALEFPPKKLFGNKDER 77
Query: 747 VVAHRSVLIQECLQ 760
V+A R +++ L+
Sbjct: 78 VIAERRSHLEKYLR 91
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.131 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,321,512
Number of Sequences: 62578
Number of extensions: 1374091
Number of successful extensions: 2381
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2371
Number of HSP's gapped (non-prelim): 14
length of query: 943
length of database: 14,973,337
effective HSP length: 108
effective length of query: 835
effective length of database: 8,214,913
effective search space: 6859452355
effective search space used: 6859452355
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)