Query 002283
Match_columns 943
No_of_seqs 311 out of 1225
Neff 3.5
Searched_HMMs 46136
Date Thu Mar 28 20:36:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002283.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/002283hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1829 Uncharacterized conser 99.9 3.2E-26 7E-31 260.8 5.8 114 815-939 318-431 (580)
2 KOG1259 Nischarin, modulator o 99.9 3.4E-25 7.5E-30 236.9 9.0 225 681-923 24-315 (490)
3 PF13901 DUF4206: Domain of un 99.8 2E-21 4.2E-26 197.9 1.1 74 867-940 1-74 (202)
4 cd06870 PX_CISK The phosphoino 99.8 9.3E-20 2E-24 168.8 9.9 93 680-782 16-109 (109)
5 cd06872 PX_SNX19_like_plant Th 99.8 2E-19 4.3E-24 167.3 10.5 91 680-781 14-106 (107)
6 cd06878 PX_SNX25 The phosphoin 99.8 4.3E-19 9.3E-24 169.5 10.9 94 681-782 23-127 (127)
7 cd06861 PX_Vps5p The phosphoin 99.8 7.9E-19 1.7E-23 163.5 11.1 92 680-781 14-111 (112)
8 cd06877 PX_SNX14 The phosphoin 99.8 5.1E-19 1.1E-23 167.3 9.9 93 680-782 18-119 (119)
9 cd07279 PX_SNX20_21_like The p 99.8 9.9E-19 2.2E-23 162.4 10.4 92 680-781 14-111 (112)
10 cd07276 PX_SNX16 The phosphoin 99.8 1E-18 2.3E-23 162.0 10.3 91 682-782 18-110 (110)
11 cd06875 PX_IRAS The phosphoino 99.8 9.4E-19 2E-23 164.7 10.1 92 682-783 15-106 (116)
12 cd07280 PX_YPT35 The phosphoin 99.8 1.2E-18 2.6E-23 163.8 10.5 91 681-781 19-120 (120)
13 cd07301 PX_SNX21 The phosphoin 99.8 1.5E-18 3.2E-23 162.5 10.1 92 680-781 14-111 (112)
14 cd06873 PX_SNX13 The phosphoin 99.8 2.1E-18 4.5E-23 162.8 10.4 94 680-782 18-120 (120)
15 cd06867 PX_SNX41_42 The phosph 99.8 2.1E-18 4.5E-23 160.3 10.1 88 681-782 15-112 (112)
16 cd06898 PX_SNX10 The phosphoin 99.8 2.7E-18 5.8E-23 160.9 10.7 92 680-781 14-112 (113)
17 cd07282 PX_SNX2 The phosphoino 99.8 3.5E-18 7.6E-23 162.7 10.8 95 680-781 14-123 (124)
18 cd07281 PX_SNX1 The phosphoino 99.8 3.7E-18 8E-23 161.7 10.7 95 680-781 14-123 (124)
19 cd07295 PX_Grd19 The phosphoin 99.8 4.2E-18 9.2E-23 160.5 10.6 93 680-782 15-114 (116)
20 cd07286 PX_SNX18 The phosphoin 99.7 3.9E-18 8.5E-23 163.9 10.5 92 679-782 15-107 (127)
21 cd06865 PX_SNX_like The phosph 99.7 4.9E-18 1.1E-22 160.3 10.5 92 680-781 19-119 (120)
22 cd06860 PX_SNX7_30_like The ph 99.7 6E-18 1.3E-22 158.8 11.0 92 680-781 14-115 (116)
23 cd07300 PX_SNX20 The phosphoin 99.7 5.5E-18 1.2E-22 159.4 10.5 93 680-782 14-112 (114)
24 cd06866 PX_SNX8_Mvp1p_like The 99.7 7.3E-18 1.6E-22 156.1 10.7 87 683-781 17-104 (105)
25 cd07285 PX_SNX9 The phosphoino 99.7 8.3E-18 1.8E-22 161.5 10.6 95 678-784 14-110 (126)
26 cd07277 PX_RUN The phosphoinos 99.7 8.2E-18 1.8E-22 159.4 10.2 94 680-784 14-108 (118)
27 cd07293 PX_SNX3 The phosphoino 99.7 1.1E-17 2.4E-22 159.3 11.1 93 680-782 15-121 (123)
28 cd06863 PX_Atg24p The phosphoi 99.7 1.3E-17 2.9E-22 156.0 11.3 92 680-781 15-117 (118)
29 cd06897 PX_SNARE The phosphoin 99.7 8.8E-18 1.9E-22 153.9 9.8 91 682-781 13-107 (108)
30 cd06880 PX_SNX22 The phosphoin 99.7 1.5E-17 3.2E-22 155.1 11.1 87 682-783 17-103 (110)
31 cd06862 PX_SNX9_18_like The ph 99.7 1.4E-17 3E-22 159.2 10.8 93 679-783 15-108 (125)
32 cd06894 PX_SNX3_like The phosp 99.7 1.6E-17 3.5E-22 157.9 10.5 92 680-782 15-121 (123)
33 cd07283 PX_SNX30 The phosphoin 99.7 1.8E-17 3.9E-22 156.5 10.6 92 680-781 14-115 (116)
34 cd06893 PX_SNX19 The phosphoin 99.7 1.1E-17 2.4E-22 161.3 9.3 93 680-782 17-132 (132)
35 cd06871 PX_MONaKA The phosphoi 99.7 2.4E-17 5.1E-22 156.1 10.2 91 680-782 17-110 (120)
36 cd07284 PX_SNX7 The phosphoino 99.7 2.8E-17 6.1E-22 155.3 10.5 92 680-781 14-115 (116)
37 cd06859 PX_SNX1_2_like The pho 99.7 2.5E-17 5.5E-22 152.2 10.0 92 680-781 14-113 (114)
38 cd07287 PX_RPK118_like The pho 99.7 3.9E-17 8.3E-22 155.0 11.2 93 682-781 15-117 (118)
39 cd06883 PX_PI3K_C2 The phospho 99.7 2.5E-17 5.4E-22 153.5 9.6 92 681-781 13-108 (109)
40 cd06881 PX_SNX15_like The phos 99.7 3.3E-17 7.1E-22 154.1 9.9 90 682-781 15-116 (117)
41 cd06864 PX_SNX4 The phosphoino 99.7 3.6E-17 7.9E-22 156.7 10.3 91 681-781 20-128 (129)
42 cd06868 PX_HS1BP3 The phosphoi 99.7 3.6E-17 7.9E-22 155.2 10.2 90 680-781 16-119 (120)
43 cd06882 PX_p40phox The phospho 99.7 2.9E-17 6.2E-22 156.4 9.3 94 680-783 16-119 (123)
44 cd06884 PX_PI3K_C2_68D The pho 99.7 8.1E-17 1.8E-21 151.4 9.9 106 657-781 1-110 (111)
45 cd07288 PX_SNX15 The phosphoin 99.7 1.3E-16 2.8E-21 151.2 10.6 90 682-781 15-117 (118)
46 cd06876 PX_MDM1p The phosphoin 99.7 1.7E-16 3.6E-21 152.0 11.5 90 681-780 35-132 (133)
47 cd07294 PX_SNX12 The phosphoin 99.7 1.8E-16 4E-21 153.0 11.6 94 680-783 17-124 (132)
48 cd06874 PX_KIF16B_SNX23 The ph 99.7 2E-16 4.3E-21 151.8 10.8 85 680-773 14-99 (127)
49 cd06879 PX_UP1_plant The phosp 99.6 4.6E-16 1E-20 151.6 9.5 90 683-782 43-138 (138)
50 cd06886 PX_SNX27 The phosphoin 99.6 5.9E-16 1.3E-20 143.9 9.2 86 682-781 19-105 (106)
51 smart00312 PX PhoX homologous 99.6 7.6E-16 1.7E-20 137.7 8.8 91 681-780 11-105 (105)
52 cd06869 PX_UP2_fungi The phosp 99.6 2.6E-15 5.6E-20 142.7 10.8 88 678-781 27-118 (119)
53 cd06885 PX_SNX17_31 The phosph 99.6 1.6E-15 3.4E-20 140.5 8.8 88 680-781 14-102 (104)
54 cd06895 PX_PLD The phosphoinos 99.6 2.7E-15 5.9E-20 146.3 10.4 101 681-782 20-140 (140)
55 cd06888 PX_FISH The phosphoino 99.6 4.9E-15 1.1E-19 141.1 10.9 106 657-781 1-118 (119)
56 cd06093 PX_domain The Phox Hom 99.6 9.7E-15 2.1E-19 128.7 11.2 91 680-780 13-105 (106)
57 cd06887 PX_p47phox The phospho 99.6 1.1E-14 2.4E-19 138.7 10.9 105 657-782 1-116 (118)
58 PF00787 PX: PX domain; Inter 99.6 3.9E-15 8.5E-20 132.6 7.0 105 657-782 3-113 (113)
59 KOG2527 Sorting nexin SNX11 [I 99.5 6.3E-15 1.4E-19 142.5 5.8 119 644-784 7-132 (144)
60 cd07296 PX_PLD1 The phosphoino 99.5 3.2E-14 6.9E-19 138.4 9.7 116 656-782 7-135 (135)
61 cd07290 PX_PI3K_C2_beta The ph 99.5 5.6E-14 1.2E-18 132.4 9.8 92 681-781 13-108 (109)
62 cd07289 PX_PI3K_C2_alpha The p 99.5 6.6E-14 1.4E-18 132.0 9.9 90 682-781 14-108 (109)
63 cd06890 PX_Bem1p The phosphoin 99.5 1.4E-13 3E-18 129.0 9.1 93 682-781 12-111 (112)
64 cd06891 PX_Vps17p The phosphoi 99.4 1.2E-12 2.6E-17 128.2 9.6 89 683-781 43-139 (140)
65 KOG2528 Sorting nexin SNX9/SH3 99.3 1.7E-12 3.6E-17 144.6 6.2 96 675-782 196-292 (490)
66 cd06892 PX_SNX5_like The phosp 99.2 2.1E-11 4.6E-16 119.7 8.2 98 682-781 14-140 (141)
67 cd07291 PX_SNX5 The phosphoino 99.2 3.6E-11 7.7E-16 117.8 7.9 93 682-781 14-140 (141)
68 cd06889 PX_NoxO1 The phosphoin 99.2 1.7E-10 3.6E-15 110.9 10.7 91 682-781 17-120 (121)
69 cd07297 PX_PLD2 The phosphoino 99.2 1.2E-10 2.7E-15 112.6 9.4 95 685-782 24-130 (130)
70 cd07292 PX_SNX6 The phosphoino 99.2 1E-10 2.2E-15 114.6 8.8 96 683-781 15-140 (141)
71 KOG2273 Membrane coat complex 99.1 2.3E-10 4.9E-15 129.8 11.9 95 679-783 123-228 (503)
72 cd06896 PX_PI3K_C2_gamma The p 98.9 7.5E-09 1.6E-13 96.7 8.1 85 685-780 13-99 (101)
73 COG5391 Phox homology (PX) dom 98.4 4.3E-07 9.3E-12 105.2 8.1 78 681-767 148-239 (524)
74 KOG2101 Intermediate filament- 98.2 3.4E-06 7.4E-11 92.6 7.3 84 680-765 131-222 (362)
75 KOG0905 Phosphoinositide 3-kin 98.1 1.1E-05 2.3E-10 98.8 10.7 113 651-782 1369-1485(1639)
76 KOG3784 Sorting nexin protein 97.8 4.1E-05 8.9E-10 85.9 8.2 89 680-782 13-102 (407)
77 cd07298 PX_RICS The phosphoino 97.3 0.0008 1.7E-08 64.8 7.7 85 683-780 26-114 (115)
78 cd07278 PX_RICS_like The phosp 97.0 0.0022 4.9E-08 61.7 7.8 85 683-780 25-113 (114)
79 cd07299 PX_TCGAP The phosphoin 97.0 0.0023 4.9E-08 61.5 7.3 86 682-780 23-112 (113)
80 KOG4773 NADPH oxidase [Energy 96.3 0.0064 1.4E-07 68.0 5.9 93 680-782 34-137 (386)
81 KOG1660 Sorting nexin SNX6/TFA 75.4 4.9 0.00011 46.0 5.6 93 696-789 55-170 (399)
82 PLN02866 phospholipase D 73.1 4.4 9.6E-05 51.8 5.0 98 684-783 32-172 (1068)
83 KOG1329 Phospholipase D1 [Lipi 51.3 13 0.00027 47.0 3.4 98 682-782 64-164 (887)
84 COG2174 RPL34A Ribosomal prote 47.4 9 0.00019 36.6 1.0 46 836-882 33-79 (93)
85 PRK11586 napB nitrate reductas 33.5 34 0.00074 35.3 2.7 17 873-889 119-135 (149)
86 PRK13796 GTPase YqeH; Provisio 31.1 19 0.00041 40.8 0.5 41 839-882 2-42 (365)
87 KOG4405 GDP dissociation inhib 29.9 19 0.00041 42.7 0.2 54 702-765 155-208 (547)
88 PF00412 LIM: LIM domain; Int 28.9 18 0.00038 29.7 -0.1 34 833-882 22-55 (58)
89 KOG2593 Transcription initiati 23.6 45 0.00099 39.4 1.8 48 833-893 124-175 (436)
90 PF03892 NapB: Nitrate reducta 23.1 25 0.00053 35.6 -0.4 17 873-889 108-124 (133)
91 PF11781 RRN7: RNA polymerase 22.8 49 0.0011 26.5 1.3 12 871-882 22-33 (36)
No 1
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=99.92 E-value=3.2e-26 Score=260.76 Aligned_cols=114 Identities=36% Similarity=0.718 Sum_probs=108.3
Q ss_pred CccEEEEEecCCchhhHHhhcccccccccccccccCcchhhhhhhccccCCcccccccceeecCCCCCCCcccCCCceEE
Q 002283 815 KTISLVVEIRPHRSMKQMLESQHYTCAGCHKHFDDGITLMQDFVQTLGWGKPRLCEYTGQLFCSTCHTNETAVLPARVLH 894 (943)
Q Consensus 815 stnqLifEIspfKSLeqgL~sQ~yrCAgC~~~Ii~Gl~sLRd~LktLtv~k~RlC~YtG~YYCs~CH~NdtsVIPARVLh 894 (943)
.+.+++|+++|.+++++||++|+|+||||+++|.. ..|.++|+|+|.|+|||+.||+++.++|||||||
T Consensus 318 ~r~~~i~~~~~~~~re~gL~aQ~~~CAgC~~~i~~-----------~~~~~~R~C~y~G~y~C~~Ch~~~~svIPARVl~ 386 (580)
T KOG1829|consen 318 PRCQIIFHIHPAIPREKGLDAQNFRCAGCGHTIGP-----------DLEQRPRLCRYLGKYFCDCCHQNDKSVIPARVLH 386 (580)
T ss_pred chhhhhhhcccCcchhhhhhccCceecccCCCccc-----------ccccchhHhhhhhhhhCchhcccCccccccccee
Confidence 36899999999999999999999999999998841 3578899999999999999999999999999999
Q ss_pred eecCCCCccchhHHHHHHHhhccccccccccCCcccccchhHHHh
Q 002283 895 HWDFTRYPVSQLAKSFLDSVYNQVFEIQDCVYSFVSGGFECVDEL 939 (943)
Q Consensus 895 nWDFS~npVSqiAks~L~~I~~qPlLnL~aINP~LY~~~~~l~EL 939 (943)
+|||++|+||++|++||.+|+.+|+|++..+||.||.|+..|+++
T Consensus 387 ~WDf~~y~Vs~~a~~~L~~ir~~Pl~~~q~ln~~Ly~~~~~L~~v 431 (580)
T KOG1829|consen 387 NWDFTKYPVSNFAKQFLDEIREQPLFNLQDLNPDLYSKVKALAEV 431 (580)
T ss_pred cccCcccccchhHHHHHHHHhccchhhhcccChHHHhhhHHHHHH
Confidence 999999999999999999999999999999999999999999887
No 2
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.91 E-value=3.4e-25 Score=236.88 Aligned_cols=225 Identities=22% Similarity=0.234 Sum_probs=182.5
Q ss_pred ccccEEEEEEEEECCceEEEEeecccHHHHHHHHHhhcccCCCCCCCCCcccccccccccCCCCHHHHHHHHHHHHHHHH
Q 002283 681 VKEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEGWSLPSPWSSVEKESRKIFGNVSPLVVAHRSVLIQECLQ 760 (943)
Q Consensus 681 vksYTVY~IrV~sg~~eWtV~RRYSEF~eLHqrLke~Fp~~~L~LP~p~~sVeK~PKKlFGn~speFIEeRRkaLE~YLQ 760 (943)
+..||+|.|+|+.+..+|+|.|||+||..||++|.......+--|| |||++|+..+.|+|+|+++||.|||
T Consensus 24 ~~~~t~y~i~v~~g~~ew~v~~ry~df~~lheklv~e~~i~k~llp---------pkk~ig~~~~s~~e~r~~~leiylq 94 (490)
T KOG1259|consen 24 SGGVTYYDIKVRVGKVEWLVERRYRDFANLHEKLVGEISISKKLLP---------PKKLVGNKQPSFLEQRREQLEIYLQ 94 (490)
T ss_pred cCceEEEEEEEEecceeeeehhhhhHHHHHHHHhhhhheeccccCC---------chhhcCCCChhHHHHHHHHHHHHHH
Confidence 3579999999999999999999999999999999976555444688 7999999999999999999999999
Q ss_pred HHhccCCCCCChhhhhcccccc--------------------------cccCCCC--------CCCCCCCCcccCCCCCC
Q 002283 761 SILHSSSFSSPPNALITFLSQQ--------------------------ESLRNSP--------ASNPLVSGYTSFAKGTD 806 (943)
Q Consensus 761 ~LLsh~~~ls~SevL~eFLe~~--------------------------~s~~~SP--------rLklp~P~~~s~d~g~D 806 (943)
.|+.. +.-..|.+|.+||+++ +.|.++| ||++|+|++.+.+.++|
T Consensus 95 ~ll~~-f~~~~pr~la~fl~f~~y~i~~~~~~la~~~~e~g~~ll~~~~~~~~~~l~~yaise~l~~~~p~~~~~~~k~d 173 (490)
T KOG1259|consen 95 ELLIY-FRTELPRALAEFLDFNKYDIIYLLQDLAKLFNESGDALLSSKKEYNLSALEVYAISERLSLPCPPSLDRGGKYD 173 (490)
T ss_pred HHHHH-ccccCHHHHHHHhccchHHHHHHHHHHHHHHHhhhHHHhccCceecccchhhhhHHHHhcCCCCCccCCCCccc
Confidence 99994 5566799999999998 2244555 99999999999999999
Q ss_pred CCCc----------------cccCC----ccEEEEEecCCchhhHHhhcccccccccccccccCcchhhhhhhccccCCc
Q 002283 807 AENM----------------SALGK----TISLVVEIRPHRSMKQMLESQHYTCAGCHKHFDDGITLMQDFVQTLGWGKP 866 (943)
Q Consensus 807 ~ghI----------------s~lGs----tnqLifEIspfKSLeqgL~sQ~yrCAgC~~~Ii~Gl~sLRd~LktLtv~k~ 866 (943)
++|+ .++|+ .+.|.|+++.||+++++-.+. |.+.-|.|+..++.+|+|+.|+..
T Consensus 174 ~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~------~~~~~i~~~~~~kptl~t~~v~~s 247 (490)
T KOG1259|consen 174 FSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSA------LSTENIVDIELLKPTLQTICVHNT 247 (490)
T ss_pred hHHHHHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeec------cchhheeceeecCchhheeeeecc
Confidence 9999 46665 689999999999999987654 666777899999999999999874
Q ss_pred ccccccceeecC----------CCCCC--CcccCCC-ceEEeecCCCCccchhHHHHHHHhhcccccccc
Q 002283 867 RLCEYTGQLFCS----------TCHTN--ETAVLPA-RVLHHWDFTRYPVSQLAKSFLDSVYNQVFEIQD 923 (943)
Q Consensus 867 RlC~YtG~YYCs----------~CH~N--dtsVIPA-RVLhnWDFS~npVSqiAks~L~~I~~qPlLnL~ 923 (943)
- ..+...+... .-..+ .++++|. ..|...|++.|.|++++.+. +.+.+-.++++.
T Consensus 248 ~-~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESv-KL~Pkir~L~lS 315 (490)
T KOG1259|consen 248 T-IQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESV-KLAPKLRRLILS 315 (490)
T ss_pred c-ccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhhh-hhccceeEEecc
Confidence 3 2333333322 11111 3445664 88999999999999999886 666666666665
No 3
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=99.82 E-value=2e-21 Score=197.91 Aligned_cols=74 Identities=39% Similarity=0.868 Sum_probs=70.2
Q ss_pred ccccccceeecCCCCCCCcccCCCceEEeecCCCCccchhHHHHHHHhhccccccccccCCcccccchhHHHhh
Q 002283 867 RLCEYTGQLFCSTCHTNETAVLPARVLHHWDFTRYPVSQLAKSFLDSVYNQVFEIQDCVYSFVSGGFECVDELI 940 (943)
Q Consensus 867 RlC~YtG~YYCs~CH~NdtsVIPARVLhnWDFS~npVSqiAks~L~~I~~qPlLnL~aINP~LY~~~~~l~EL~ 940 (943)
|+|+|+|+|||+.||||++++||||||++|||++||||+.|+++|.+|+++|+|+|.++||.||.+++.|.++.
T Consensus 1 R~C~Y~G~yyC~~CH~~~~~vIParil~~WDf~~~pVs~~a~~~L~~~~~~Pl~~i~~~np~ly~~v~~L~~v~ 74 (202)
T PF13901_consen 1 RFCDYTGKYYCSSCHWNDTSVIPARILHNWDFRPYPVSRFAKQFLDQIWSKPLINIEALNPSLYSHVKELRKVR 74 (202)
T ss_pred CccCCCCCcCCCCCCCCCceeccHHHHHhcCCCccHHHHHHHHHHHHhccCCEeeHHHhCHHHHHHhHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999988877776653
No 4
>cd06870 PX_CISK The phosphoinositide binding Phox Homology Domain of Cytokine-Independent Survival Kinase. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Cytokine-independent survival kinase (CISK), also called Serum- and Glucocorticoid-induced Kinase 3 (SGK3), plays a role in cell growth and survival. It is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. CISK/SGK3 also regulates many transporters, ion channels, and receptors. It plays a critical role in hair follicle morphogenesis and hair cycling. N-terminal to a catalytic kinase domain, CISK contains a PX domain which binds highly phosphorylated PIs, directs membrane localization, and regulates the enzyme's activity.
Probab=99.81 E-value=9.3e-20 Score=168.78 Aligned_cols=93 Identities=29% Similarity=0.515 Sum_probs=85.1
Q ss_pred CccccEEEEEEEEECCceEEEEeecccHHHHHHHHHhhcccCCCCCCCCCcccccccccccC-CCCHHHHHHHHHHHHHH
Q 002283 680 GVKEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEGWSLPSPWSSVEKESRKIFG-NVSPLVVAHRSVLIQEC 758 (943)
Q Consensus 680 GvksYTVY~IrV~sg~~eWtV~RRYSEF~eLHqrLke~Fp~~~L~LP~p~~sVeK~PKKlFG-n~speFIEeRRkaLE~Y 758 (943)
..++||+|.|+|+.++..|+|+||||||.+||++|++.||...++|| +|++|| +++++||++||++||.|
T Consensus 16 ~~~~~~~Y~I~v~~~~~~~~v~RRYseF~~L~~~L~~~~~~~~~~lP---------~K~~~~~~~~~~~ie~Rr~~Le~f 86 (109)
T cd06870 16 KKKRFTVYKVVVSVGRSSWFVFRRYAEFDKLYESLKKQFPASNLKIP---------GKRLFGNNFDPDFIKQRRAGLDEF 86 (109)
T ss_pred CCCCeEEEEEEEEECCeEEEEEeehHHHHHHHHHHHHHCcccCcCCC---------CCcccccCCCHHHHHHHHHHHHHH
Confidence 34689999999999999999999999999999999999998777888 699999 89999999999999999
Q ss_pred HHHHhccCCCCCChhhhhcccccc
Q 002283 759 LQSILHSSSFSSPPNALITFLSQQ 782 (943)
Q Consensus 759 LQ~LLsh~~~ls~SevL~eFLe~~ 782 (943)
|+.|+++ +.+..++.|.+||.+.
T Consensus 87 L~~ll~~-p~l~~s~~~~~FL~~~ 109 (109)
T cd06870 87 IQRLVSD-PKLLNHPDVRAFLQMD 109 (109)
T ss_pred HHHHhCC-HhhhcChHHHHHhCcC
Confidence 9999996 5677889999999863
No 5
>cd06872 PX_SNX19_like_plant The phosphoinositide binding Phox Homology domain of uncharacterized SNX19-like plant proteins. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized plant proteins containing an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some sorting nexins (SNXs). This is the same domain architecture found in SNX19. SNX13 and SNX14 also contain these three domains but also contain a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction dom
Probab=99.80 E-value=2e-19 Score=167.29 Aligned_cols=91 Identities=29% Similarity=0.555 Sum_probs=80.1
Q ss_pred CccccEEEEEEEEEC-CceEEEEeecccHHHHHHHHHhhcccCCCCCCCCCccccccccccc-CCCCHHHHHHHHHHHHH
Q 002283 680 GVKEYTVYKIRVWSG-KDQWEVERRYRDFYTLYRRLKSLSADEGWSLPSPWSSVEKESRKIF-GNVSPLVVAHRSVLIQE 757 (943)
Q Consensus 680 GvksYTVY~IrV~sg-~~eWtV~RRYSEF~eLHqrLke~Fp~~~L~LP~p~~sVeK~PKKlF-Gn~speFIEeRRkaLE~ 757 (943)
|.+.||+|.|+|... ...|+|.||||||++||++|++ ++...++|| ||+++ ++++++|||+||.+||.
T Consensus 14 ~~~~y~vY~I~v~~~~~~~w~v~RRYsdF~~L~~~L~~-~~~~~~~lP---------~K~~~~~~~~~~fie~Rr~~Le~ 83 (107)
T cd06872 14 GSKSFAVYSVAVTDNENETWVVKRRFRNFETLHRRLKE-VPKYNLELP---------PKRFLSSSLDGAFIEERCKLLDK 83 (107)
T ss_pred CCccEEEEEEEEEECCCceEEEEehHHHHHHHHHHHHh-ccCCCCCCC---------CccccCCCCCHHHHHHHHHHHHH
Confidence 567899999999874 6799999999999999999997 455556788 69998 57999999999999999
Q ss_pred HHHHHhccCCCCCChhhhhccccc
Q 002283 758 CLQSILHSSSFSSPPNALITFLSQ 781 (943)
Q Consensus 758 YLQ~LLsh~~~ls~SevL~eFLe~ 781 (943)
|||.|+++ +.+..++.|++||..
T Consensus 84 yL~~l~~~-p~i~~s~~~~~FL~~ 106 (107)
T cd06872 84 YLKDLLVI-EKVAESHEVWSFLSA 106 (107)
T ss_pred HHHHHhcC-hhhhcCHHHHHHhcc
Confidence 99999996 577888999999974
No 6
>cd06878 PX_SNX25 The phosphoinositide binding Phox Homology domain of Sorting Nexin 25. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. The function of SNX25 is not yet known. It has been found in exosomes from human malignant pleural effusions. SNX25 shows the same domain architecture as SNX13 and SNX14, containing an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some S
Probab=99.79 E-value=4.3e-19 Score=169.47 Aligned_cols=94 Identities=32% Similarity=0.402 Sum_probs=81.3
Q ss_pred ccccEEEEEEEEECC----------ceEEEEeecccHHHHHHHHHhhcccC-CCCCCCCCcccccccccccCCCCHHHHH
Q 002283 681 VKEYTVYKIRVWSGK----------DQWEVERRYRDFYTLYRRLKSLSADE-GWSLPSPWSSVEKESRKIFGNVSPLVVA 749 (943)
Q Consensus 681 vksYTVY~IrV~sg~----------~eWtV~RRYSEF~eLHqrLke~Fp~~-~L~LP~p~~sVeK~PKKlFGn~speFIE 749 (943)
.+.|++|.|.|+..+ ..|+|.|||+||++||++|++.|+.. .+.||.+ |||+|++++++|||
T Consensus 23 ~~~~~vY~I~V~~~~~~~~~~~~~~~~W~V~RRYsdF~~Lh~~Lk~~~~~~~~~~lP~p-------pKk~~~~~~~~fle 95 (127)
T cd06878 23 DKEVPLYVIVVHVSEVGLNEDESISSGWVVTRKLSEFHDLHRKLKECSSWLKKVELPSL-------SKKWFKSIDKKFLD 95 (127)
T ss_pred CeEEEEEEEEEEEecCCCCCCCCCcceEEEEEeHHHHHHHHHHHHHHCCCccccCCCCC-------CccccccCCHHHHH
Confidence 468999999998743 35999999999999999999999875 2455521 69999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCCCChhhhhcccccc
Q 002283 750 HRSVLIQECLQSILHSSSFSSPPNALITFLSQQ 782 (943)
Q Consensus 750 eRRkaLE~YLQ~LLsh~~~ls~SevL~eFLe~~ 782 (943)
+||.+||.|||.|+.+ +.+..+++|.+||+++
T Consensus 96 ~Rr~~Le~YLq~ll~~-~~l~~s~~l~~FLsp~ 127 (127)
T cd06878 96 KSKNQLQKYLQFILED-ETLCQSEALYSFLSPS 127 (127)
T ss_pred HHHHHHHHHHHHHhCC-hhhcCCHHHHHHcCCC
Confidence 9999999999999996 5788899999999874
No 7
>cd06861 PX_Vps5p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps5p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. The PX domain of Vps5p binds phosphatidylinositol-3-phosphate (PI3P
Probab=99.78 E-value=7.9e-19 Score=163.48 Aligned_cols=92 Identities=25% Similarity=0.350 Sum_probs=81.5
Q ss_pred CccccEEEEEEEEEC-----CceEEEEeecccHHHHHHHHHhhcccCC-CCCCCCCcccccccccccCCCCHHHHHHHHH
Q 002283 680 GVKEYTVYKIRVWSG-----KDQWEVERRYRDFYTLYRRLKSLSADEG-WSLPSPWSSVEKESRKIFGNVSPLVVAHRSV 753 (943)
Q Consensus 680 GvksYTVY~IrV~sg-----~~eWtV~RRYSEF~eLHqrLke~Fp~~~-L~LP~p~~sVeK~PKKlFGn~speFIEeRRk 753 (943)
+.++||+|+|+++.. ...|.|.|||+||.+||++|++.||... ++|| +|+++|+++++||++||+
T Consensus 14 ~~~~y~~Y~I~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~iP~lP---------~K~~~~~~~~~fie~Rr~ 84 (112)
T cd06861 14 LTSAHTVYTVRTRTTSPNFEVSSFSVLRRYRDFRWLYRQLQNNHPGVIVPPPP---------EKQSVGRFDDNFVEQRRA 84 (112)
T ss_pred CccCeEEEEEEEEeCCCCCCCCccEEEeehHHHHHHHHHHHHHCCCCccCCCC---------CcccccCCCHHHHHHHHH
Confidence 467899999999874 3589999999999999999999998764 3566 588999999999999999
Q ss_pred HHHHHHHHHhccCCCCCChhhhhccccc
Q 002283 754 LIQECLQSILHSSSFSSPPNALITFLSQ 781 (943)
Q Consensus 754 aLE~YLQ~LLsh~~~ls~SevL~eFLe~ 781 (943)
+||.||+.|+.| +.+..+.+|+.||+.
T Consensus 85 ~Le~fL~~i~~~-p~l~~s~~~~~FL~~ 111 (112)
T cd06861 85 ALEKMLRKIANH-PVLQKDPDFRLFLES 111 (112)
T ss_pred HHHHHHHHHHCC-cccccCcHHHHhcCC
Confidence 999999999997 568888999999975
No 8
>cd06877 PX_SNX14 The phosphoinositide binding Phox Homology domain of Sorting Nexin 14. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX14 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. It is expressed in the embryonic nervous system of mice, and is co-expressed in the motoneurons and the anterior pituary with Islet-1. SNX14 shows a similar domain architecture as SNX13, containing an N
Probab=99.78 E-value=5.1e-19 Score=167.30 Aligned_cols=93 Identities=30% Similarity=0.459 Sum_probs=82.8
Q ss_pred CccccEEEEEEEEE--------CCceEEEEeecccHHHHHHHHHhhcccCC-CCCCCCCcccccccccccCCCCHHHHHH
Q 002283 680 GVKEYTVYKIRVWS--------GKDQWEVERRYRDFYTLYRRLKSLSADEG-WSLPSPWSSVEKESRKIFGNVSPLVVAH 750 (943)
Q Consensus 680 GvksYTVY~IrV~s--------g~~eWtV~RRYSEF~eLHqrLke~Fp~~~-L~LP~p~~sVeK~PKKlFGn~speFIEe 750 (943)
+.+.|++|.|+|+. ....|+|.||||||.+||.+|++.++... ++|| ||+++++++++||++
T Consensus 18 ~~~~~~~Y~I~V~~~~~~~~~~~~~~w~V~RRYsdF~~L~~~L~~~~~~~~~~~lP---------~K~~~~~~~~~~ie~ 88 (119)
T cd06877 18 NGERIYVFCIEVERNDRRAKGHEPQHWSVLRRYNEFYVLESKLTEFHGEFPDAPLP---------SRRIFGPKSYEFLES 88 (119)
T ss_pred CCcEEEEEEEEEEEccccCCCCCcCceEEEechHHHHHHHHHHHHHCCCCCCCCCc---------CCcccCCCCHHHHHH
Confidence 45789999999985 24689999999999999999999988753 5888 699999999999999
Q ss_pred HHHHHHHHHHHHhccCCCCCChhhhhcccccc
Q 002283 751 RSVLIQECLQSILHSSSFSSPPNALITFLSQQ 782 (943)
Q Consensus 751 RRkaLE~YLQ~LLsh~~~ls~SevL~eFLe~~ 782 (943)
||.+||.||+.|+.+ +.+..++.|+.||+++
T Consensus 89 Rr~~Le~fL~~ll~~-~~l~~s~~~~~FL~~~ 119 (119)
T cd06877 89 KREIFEEFLQKLLQK-PELRGSELLYDFLSPN 119 (119)
T ss_pred HHHHHHHHHHHHhCC-cccccCHHHHHhCCCC
Confidence 999999999999996 5788899999999863
No 9
>cd07279 PX_SNX20_21_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 20 and 21. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX20, SNX21, and similar proteins. SNX20 interacts with P-Selectin glycoprotein ligand-1 (PSGL-1), a surface-expressed mucin that acts as a ligand for the selectin family of adhesion proteins. It may function in the sorting and cycling of PSGL-1 into endosomes. SNX21, also cal
Probab=99.77 E-value=9.9e-19 Score=162.43 Aligned_cols=92 Identities=32% Similarity=0.492 Sum_probs=81.1
Q ss_pred CccccEEEEEEEEEC----CceEEEEeecccHHHHHHHHHhhcccCC--CCCCCCCcccccccccccCCCCHHHHHHHHH
Q 002283 680 GVKEYTVYKIRVWSG----KDQWEVERRYRDFYTLYRRLKSLSADEG--WSLPSPWSSVEKESRKIFGNVSPLVVAHRSV 753 (943)
Q Consensus 680 GvksYTVY~IrV~sg----~~eWtV~RRYSEF~eLHqrLke~Fp~~~--L~LP~p~~sVeK~PKKlFGn~speFIEeRRk 753 (943)
|.++|++|.|+|... ...|.|.||||||.+||++|++.||... ++|| +|+++|+++++||++||.
T Consensus 14 ~~~~yv~Y~I~v~~~~~~~~~~~~v~RRYsdF~~L~~~L~~~~p~~~~~~~lP---------~K~~~~~~~~~~ie~Rr~ 84 (112)
T cd07279 14 GEKKYVVYQLAVVQTGDPDTQPAFIERRYSDFLKLYKALRKQHPQLMAKVSFP---------RKVLMGNFSSELIAERSR 84 (112)
T ss_pred CCeeEEEEEEEEEECCCCCCceEEEecchHhHHHHHHHHHHHCCCcCCCCCCC---------CCeecccCCHHHHHHHHH
Confidence 457999999999874 3579999999999999999999998763 3677 588999999999999999
Q ss_pred HHHHHHHHHhccCCCCCChhhhhccccc
Q 002283 754 LIQECLQSILHSSSFSSPPNALITFLSQ 781 (943)
Q Consensus 754 aLE~YLQ~LLsh~~~ls~SevL~eFLe~ 781 (943)
+||.||+.|+.| +.+..++.|++||..
T Consensus 85 ~Le~fL~~l~~~-p~l~~s~~~~~FL~~ 111 (112)
T cd07279 85 AFEQFLGHILSI-PNLRDSKAFLDFLQG 111 (112)
T ss_pred HHHHHHHHHhCC-HhhhcChHHHHHhCC
Confidence 999999999997 567788999999975
No 10
>cd07276 PX_SNX16 The phosphoinositide binding Phox Homology domain of Sorting Nexin 16. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX16 contains a central PX domain followed by a coiled-coil region. SNX16 is localized in early and recycling endosomes through the binding of its PX domain to phosphatidylinositol-3-phosphate (PI3P). It plays a role in epidermal growth factor (EGF) signaling by regulating EGF receptor membrane trafficking.
Probab=99.77 E-value=1e-18 Score=162.04 Aligned_cols=91 Identities=30% Similarity=0.456 Sum_probs=81.9
Q ss_pred cccEEEEEEEEECC-ceEEEEeecccHHHHHHHHHhhcccCCCCCCCCCcccccccccccCC-CCHHHHHHHHHHHHHHH
Q 002283 682 KEYTVYKIRVWSGK-DQWEVERRYRDFYTLYRRLKSLSADEGWSLPSPWSSVEKESRKIFGN-VSPLVVAHRSVLIQECL 759 (943)
Q Consensus 682 ksYTVY~IrV~sg~-~eWtV~RRYSEF~eLHqrLke~Fp~~~L~LP~p~~sVeK~PKKlFGn-~speFIEeRRkaLE~YL 759 (943)
++||+|.|+|..+. ..|.|.||||||.+||++|++.||...++|| ||++|++ ++++||++||.+||.||
T Consensus 18 ~~~~vY~I~v~~~~~~~~~v~RRYsdF~~L~~~L~~~~~~~~~~lP---------~K~~~~~~~~~~fie~Rr~~Lq~fL 88 (110)
T cd07276 18 ARFTVYKIRVENKVGDSWFVFRRYTDFVRLNDKLKQMFPGFRLSLP---------PKRWFKDNFDPDFLEERQLGLQAFV 88 (110)
T ss_pred CCeEEEEEEEEECCCCEEEEEEehHHHHHHHHHHHHHCCCCCCCCC---------CcceecccCCHHHHHHHHHHHHHHH
Confidence 58999999999864 7999999999999999999999988666888 6898875 89999999999999999
Q ss_pred HHHhccCCCCCChhhhhcccccc
Q 002283 760 QSILHSSSFSSPPNALITFLSQQ 782 (943)
Q Consensus 760 Q~LLsh~~~ls~SevL~eFLe~~ 782 (943)
+.|++| +.+..+++|++||.++
T Consensus 89 ~~ll~~-~~l~~s~~~~~FL~~~ 110 (110)
T cd07276 89 NNIMAH-KDIAKCKLVREFFCLD 110 (110)
T ss_pred HHHhcC-HhhhcChHHHHHhccC
Confidence 999997 5677889999999864
No 11
>cd06875 PX_IRAS The phosphoinositide binding Phox Homology domain of the Imidazoline Receptor Antisera-Selected. The PX domain is a phosphoinositide binding (PI) module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Imidazoline Receptor Antisera-Selected (IRAS), also called nischarin, contains an N-terminal PX domain, leucine rich repeats, and a predicted coiled coil domain. The PX domain of IRAS binds to phosphatidylinositol-3-phosphate in membranes. Together with the coiled coil domain, it is essential for the localization of IRAS to endosomes. IRAS has been shown to interact with integrin and inhibit cell migration. Its interaction with alpha5 integrin causes a redistribution of the receptor from the cell surface to endosomal structures, suggesting that IRAS may function as a sorting nexin (SNX) which regulates the endosomal trafficking of integrin. SNXs make up the largest group a
Probab=99.77 E-value=9.4e-19 Score=164.71 Aligned_cols=92 Identities=34% Similarity=0.496 Sum_probs=83.8
Q ss_pred cccEEEEEEEEECCceEEEEeecccHHHHHHHHHhhcccCCCCCCCCCcccccccccccCCCCHHHHHHHHHHHHHHHHH
Q 002283 682 KEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEGWSLPSPWSSVEKESRKIFGNVSPLVVAHRSVLIQECLQS 761 (943)
Q Consensus 682 ksYTVY~IrV~sg~~eWtV~RRYSEF~eLHqrLke~Fp~~~L~LP~p~~sVeK~PKKlFGn~speFIEeRRkaLE~YLQ~ 761 (943)
+.||+|.|+|..+...|+|.||||||.+||++|++.++.....|| ||++||+++++||++||.+||.||+.
T Consensus 15 ~~~~~Y~I~V~~~~~~w~V~RRYseF~~L~~~L~~~~~~~~~~~P---------~Kk~~~~~~~~~ie~Rr~~Le~yL~~ 85 (116)
T cd06875 15 EGYTVYIIEVKVGSVEWTVKHRYSDFAELHDKLVAEHKVDKDLLP---------PKKLIGNKSPSFVEKRRKELEIYLQT 85 (116)
T ss_pred CCEEEEEEEEEECCeEEEEEecHHHHHHHHHHHHHHcCcccCcCC---------CccccCCCCHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999854445788 69999999999999999999999999
Q ss_pred HhccCCCCCChhhhhccccccc
Q 002283 762 ILHSSSFSSPPNALITFLSQQE 783 (943)
Q Consensus 762 LLsh~~~ls~SevL~eFLe~~~ 783 (943)
|+++ +.+..+++|..||++..
T Consensus 86 ll~~-~~~~~s~~l~~FL~~~~ 106 (116)
T cd06875 86 LLSF-FQKTMPRELAHFLDFHK 106 (116)
T ss_pred HHhh-hcccCCHHHHHHhCCCc
Confidence 9996 55788899999999874
No 12
>cd07280 PX_YPT35 The phosphoinositide binding Phox Homology domain of the fungal protein YPT35. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. This subfamily is composed of YPT35 proteins from the fungal subkingdom Dikarya. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of YPT35 binds to phosphatidylinositol 3-phosphate (PI3P). It also serves as a protein interaction domain, binding to members of the Yip1p protein family, which localize to the ER and Golgi. YPT35 is mainly associated with endosomes and together with Yip1p proteins, may be involved in a specific function in the endocytic pathway.
Probab=99.77 E-value=1.2e-18 Score=163.81 Aligned_cols=91 Identities=20% Similarity=0.217 Sum_probs=81.3
Q ss_pred ccccEEEEEEEEECC---ceEEEEeecccHHHHHHHHHhhcccCC----CCCCCCCcccccccccccC----CCCHHHHH
Q 002283 681 VKEYTVYKIRVWSGK---DQWEVERRYRDFYTLYRRLKSLSADEG----WSLPSPWSSVEKESRKIFG----NVSPLVVA 749 (943)
Q Consensus 681 vksYTVY~IrV~sg~---~eWtV~RRYSEF~eLHqrLke~Fp~~~----L~LP~p~~sVeK~PKKlFG----n~speFIE 749 (943)
.+.|++|+|+|.+.. ..|.|+||||||.+||.+|++.||... ++|| +|++++ +++++|||
T Consensus 19 ~~~yv~Y~I~v~~~~~~~~~~~V~RRYseF~~L~~~L~~~~p~~~~~~~P~lP---------~K~~~~~~~~~~~~~~ie 89 (120)
T cd07280 19 GGAYVVWKITIETKDLIGSSIVAYKRYSEFVQLREALLDEFPRHKRNEIPQLP---------PKVPWYDSRVNLNKAWLE 89 (120)
T ss_pred CCCEEEEEEEEEeCCCCCCcEEEEeeHHHHHHHHHHHHHHCcccccCcCCCCC---------CCcccccccccCCHHHHH
Confidence 579999999998764 789999999999999999999999762 3677 588888 89999999
Q ss_pred HHHHHHHHHHHHHhccCCCCCChhhhhccccc
Q 002283 750 HRSVLIQECLQSILHSSSFSSPPNALITFLSQ 781 (943)
Q Consensus 750 eRRkaLE~YLQ~LLsh~~~ls~SevL~eFLe~ 781 (943)
+||++||.||+.|+.| +.++.+++|+.||++
T Consensus 90 ~Rr~~Le~fL~~l~~~-p~l~~s~~~~~FL~~ 120 (120)
T cd07280 90 KRRRGLQYFLNCVLLN-PVFGGSPVVKEFLLP 120 (120)
T ss_pred HHHHHHHHHHHHHhCC-HhhccChHHHHhhCC
Confidence 9999999999999996 467888999999974
No 13
>cd07301 PX_SNX21 The phosphoinositide binding Phox Homology domain of Sorting Nexin 21. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX21, also called SNX-L, is distinctly and highly-expressed in fetal liver and may be involved in protein sorting and degradation during embryonic liver development.
Probab=99.77 E-value=1.5e-18 Score=162.54 Aligned_cols=92 Identities=26% Similarity=0.361 Sum_probs=81.0
Q ss_pred CccccEEEEEEEEE----CCceEEEEeecccHHHHHHHHHhhcccCC--CCCCCCCcccccccccccCCCCHHHHHHHHH
Q 002283 680 GVKEYTVYKIRVWS----GKDQWEVERRYRDFYTLYRRLKSLSADEG--WSLPSPWSSVEKESRKIFGNVSPLVVAHRSV 753 (943)
Q Consensus 680 GvksYTVY~IrV~s----g~~eWtV~RRYSEF~eLHqrLke~Fp~~~--L~LP~p~~sVeK~PKKlFGn~speFIEeRRk 753 (943)
|.++|++|.|.|.. +...|.|.||||||.+||++|++.|+... ++|| +|+++++++++||++||+
T Consensus 14 ~~~~yv~Y~I~v~~~~~~~~~~~~V~RRYSdF~~L~~~L~~~~~~~~~~~~~P---------~K~~~~~~~~~~ie~Rr~ 84 (112)
T cd07301 14 AHSKYVLYTIYVIQTGQYDPSPAYISRRYSDFERLHRRLRRLFGGEMAGVSFP---------RKRLRKNFTAETIAKRSR 84 (112)
T ss_pred CCcCEEEEEEEEEecCCCCCCceEEEeehHhHHHHHHHHHHHCCCcCCCCCCC---------CCcccCCCCHHHHHHHHH
Confidence 56899999999974 34679999999999999999999998653 4677 599999999999999999
Q ss_pred HHHHHHHHHhccCCCCCChhhhhccccc
Q 002283 754 LIQECLQSILHSSSFSSPPNALITFLSQ 781 (943)
Q Consensus 754 aLE~YLQ~LLsh~~~ls~SevL~eFLe~ 781 (943)
+||.||+.|+++ +.+..+..|++||.+
T Consensus 85 ~Le~fL~~i~~~-p~l~~s~~~~~FL~l 111 (112)
T cd07301 85 AFEQFLCHLHSL-PELRASPAFLEFFYL 111 (112)
T ss_pred HHHHHHHHHhcC-HHHhcChHHHHHhCC
Confidence 999999999997 567778899999975
No 14
>cd06873 PX_SNX13 The phosphoinositide binding Phox Homology domain of Sorting Nexin 13. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX13, also called RGS-PX1, contains an N-terminal PXA domain, a regulator of G protein signaling (RGS) domain, a PX domain, and a C-terminal domain that is conserved in some SNXs. It specifically binds to the stimulatory subunit of the heterotrimeric G protein G(alpha)s, serving as its GTPase activating protein, throug
Probab=99.76 E-value=2.1e-18 Score=162.77 Aligned_cols=94 Identities=32% Similarity=0.553 Sum_probs=79.9
Q ss_pred CccccEEEEEEEEE-----CCceEEEEeecccHHHHHHHHHhhcccCC-CCCCCCCcccccccccccCCCCHHHHHHHHH
Q 002283 680 GVKEYTVYKIRVWS-----GKDQWEVERRYRDFYTLYRRLKSLSADEG-WSLPSPWSSVEKESRKIFGNVSPLVVAHRSV 753 (943)
Q Consensus 680 GvksYTVY~IrV~s-----g~~eWtV~RRYSEF~eLHqrLke~Fp~~~-L~LP~p~~sVeK~PKKlFGn~speFIEeRRk 753 (943)
|.+.||+|.|+|.. +...|+|.|||+||.+||++|++.||... ++|| +|++|++++++||++||.
T Consensus 18 ~~~~y~~Y~I~v~~~~~~~~~~~~~V~RRYseF~~L~~~L~~~~p~~~~~~lP---------~K~~~~~~~~~~ie~Rr~ 88 (120)
T cd06873 18 HGKTYAVYAISVTRIYPNGQEESWHVYRRYSDFHDLHMRLKEKFPNLSKLSFP---------GKKTFNNLDRAFLEKRRK 88 (120)
T ss_pred CCceEEEEEEEEEEecCCCCccceEEEeehHHHHHHHHHHHHHCcCCCCCCCC---------CCcccCCCCHHHHHHHHH
Confidence 46789999999976 23679999999999999999999998764 4777 599999999999999999
Q ss_pred HHHHHHHHHhccCCCCCCh---hhhhcccccc
Q 002283 754 LIQECLQSILHSSSFSSPP---NALITFLSQQ 782 (943)
Q Consensus 754 aLE~YLQ~LLsh~~~ls~S---evL~eFLe~~ 782 (943)
+||.||+.|++++...+.+ .+|..||+++
T Consensus 89 ~Le~fL~~ll~~~~l~~~~~~~~~l~~FL~~~ 120 (120)
T cd06873 89 MLNQYLQSLLNPEVLDANPGLQEIVLDFLEPG 120 (120)
T ss_pred HHHHHHHHHhCCHhhccCHHHHHHHHHHcCCC
Confidence 9999999999975443333 5788999863
No 15
>cd06867 PX_SNX41_42 The phosphoinositide binding Phox Homology domain of fungal Sorting Nexins 41 and 42. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX41 and SNX42 (also called Atg20p) form dimers with SNX4, and are required in protein recycling from the sorting endosome (post-Golgi endosome) back
Probab=99.76 E-value=2.1e-18 Score=160.32 Aligned_cols=88 Identities=24% Similarity=0.367 Sum_probs=76.2
Q ss_pred ccccEEEEEEEEECCceEEEEeecccHHHHHHHHHhhcccCC-CCCCCCCccccccccccc---------CCCCHHHHHH
Q 002283 681 VKEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEG-WSLPSPWSSVEKESRKIF---------GNVSPLVVAH 750 (943)
Q Consensus 681 vksYTVY~IrV~sg~~eWtV~RRYSEF~eLHqrLke~Fp~~~-L~LP~p~~sVeK~PKKlF---------Gn~speFIEe 750 (943)
.++||+|.|++.. |+|.||||||.+||++|++.||... ++|| +|+.+ ++++++|||+
T Consensus 15 ~~~y~~Y~I~~~~----~~V~RRYsdF~~L~~~L~~~~p~~~iPplP---------~K~~~~~~~~~~~~~~~~~~~ie~ 81 (112)
T cd06867 15 SGSYIVYVIRLGG----SEVKRRYSEFESLRKNLTRLYPTLIIPPIP---------EKHSLKDYAKKPSKAKNDAKIIER 81 (112)
T ss_pred ccCEEEEEEEeee----EEEEeccHHHHHHHHHHHHHCcCCCcCCCC---------CcchhhhhccccccccCcHHHHHH
Confidence 4689999999864 9999999999999999999998764 3777 46654 3579999999
Q ss_pred HHHHHHHHHHHHhccCCCCCChhhhhcccccc
Q 002283 751 RSVLIQECLQSILHSSSFSSPPNALITFLSQQ 782 (943)
Q Consensus 751 RRkaLE~YLQ~LLsh~~~ls~SevL~eFLe~~ 782 (943)
||++||.||+.|+.| +.+..++.|..||+++
T Consensus 82 Rr~~Le~fL~~l~~~-p~l~~s~~~~~FL~~~ 112 (112)
T cd06867 82 RKRMLQRFLNRCLQH-PILRNDIVFQKFLDPN 112 (112)
T ss_pred HHHHHHHHHHHHhcC-hhhccCcHHHHhcCCC
Confidence 999999999999997 5778889999999864
No 16
>cd06898 PX_SNX10 The phosphoinositide binding Phox Homology domain of Sorting Nexin 10. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX10 may be involved in the regulation of endosome homeostasis. Its expression induces the formation of giant vacuoles in mammalian cells.
Probab=99.76 E-value=2.7e-18 Score=160.89 Aligned_cols=92 Identities=26% Similarity=0.363 Sum_probs=80.8
Q ss_pred CccccEEEEEEEEECC-----ceEEEEeecccHHHHHHHHHhhcccCC-CCCCCCCcccccccccccCCCC-HHHHHHHH
Q 002283 680 GVKEYTVYKIRVWSGK-----DQWEVERRYRDFYTLYRRLKSLSADEG-WSLPSPWSSVEKESRKIFGNVS-PLVVAHRS 752 (943)
Q Consensus 680 GvksYTVY~IrV~sg~-----~eWtV~RRYSEF~eLHqrLke~Fp~~~-L~LP~p~~sVeK~PKKlFGn~s-peFIEeRR 752 (943)
+.++||+|.|++.++. ..|+|+|||+||.+||.+|++.++... ++|| +|++|++++ ++||++||
T Consensus 14 ~~~~y~~Y~I~~~~~~~~~~~~~~~v~RRYsdF~~L~~~L~~~~~~~~~p~lP---------~K~~~~~~~~~~fie~Rr 84 (113)
T cd06898 14 DWGSYTDYEIFLHTNSMCFTLKTSCVRRRYSEFVWLRNRLQKNALLIQLPSLP---------PKNLFGRFNNEGFIEERQ 84 (113)
T ss_pred CCCCeEEEEEEEEeCCCccCcCceEEEcchHHHHHHHHHHHHHCCCCcCCCCC---------CCccccCCCCHHHHHHHH
Confidence 4679999999998753 468999999999999999999998743 4777 699999988 99999999
Q ss_pred HHHHHHHHHHhccCCCCCChhhhhccccc
Q 002283 753 VLIQECLQSILHSSSFSSPPNALITFLSQ 781 (943)
Q Consensus 753 kaLE~YLQ~LLsh~~~ls~SevL~eFLe~ 781 (943)
++||.||+.|+.| +.+..++.|+.||+.
T Consensus 85 ~~L~~fL~~i~~~-p~l~~s~~l~~FL~~ 112 (113)
T cd06898 85 QGLQDFLEKVLQT-PLLLSDSRLHLFLQT 112 (113)
T ss_pred HHHHHHHHHHHcC-hhhccChHHHHhccC
Confidence 9999999999997 467778899999974
No 17
>cd07282 PX_SNX2 The phosphoinositide binding Phox Homology domain of Sorting Nexin 2. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures efficient cargo sort
Probab=99.75 E-value=3.5e-18 Score=162.67 Aligned_cols=95 Identities=24% Similarity=0.414 Sum_probs=78.1
Q ss_pred CccccEEEEEEEEE-----CCceEEEEeecccHHHHHHHHHhhcccCCCCCCCCCcccccccccccCC----------CC
Q 002283 680 GVKEYTVYKIRVWS-----GKDQWEVERRYRDFYTLYRRLKSLSADEGWSLPSPWSSVEKESRKIFGN----------VS 744 (943)
Q Consensus 680 GvksYTVY~IrV~s-----g~~eWtV~RRYSEF~eLHqrLke~Fp~~~L~LP~p~~sVeK~PKKlFGn----------~s 744 (943)
|.+.||+|.|++++ ....|.|+|||+||.+||.+|++.|+..++.+|+.| +|++++. ++
T Consensus 14 g~~~y~~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~g~~iPplP------~K~~~~~~~~~~~~~~~~~ 87 (124)
T cd07282 14 GMNAYMAYRVTTKTSLSMFSRSEFSVRRRFSDFLGLHSKLASKYLHVGYIVPPAP------EKSIVGMTKVKVGKEDSSS 87 (124)
T ss_pred CccCeEEEEEEeccCCCccCCCceEEEEehHHHHHHHHHHHHhCCCCCceeCCCC------CCccccccccccccccccC
Confidence 56899999999875 236899999999999999999999975543233222 5777663 58
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCChhhhhccccc
Q 002283 745 PLVVAHRSVLIQECLQSILHSSSFSSPPNALITFLSQ 781 (943)
Q Consensus 745 peFIEeRRkaLE~YLQ~LLsh~~~ls~SevL~eFLe~ 781 (943)
++|||+||++||.||++|++|+ .+..+..|+.||+.
T Consensus 88 ~~fie~Rr~~Le~fL~~i~~~p-~l~~s~~~~~FL~~ 123 (124)
T cd07282 88 TEFVEKRRAALERYLQRTVKHP-TLLQDPDLRQFLES 123 (124)
T ss_pred HHHHHHHHHHHHHHHHHHhcCc-ccccChHHHHhhcC
Confidence 9999999999999999999975 67778899999974
No 18
>cd07281 PX_SNX1 The phosphoinositide binding Phox Homology domain of Sorting Nexin 1. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX1 is both membrane associated and a cytosolic protein that exists as a tetramer in protein complexes. It can associate reversibly with membranes of the endosomal compartment, thereby coating these vesicles. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval
Probab=99.75 E-value=3.7e-18 Score=161.74 Aligned_cols=95 Identities=25% Similarity=0.506 Sum_probs=78.1
Q ss_pred CccccEEEEEEEEEC-----CceEEEEeecccHHHHHHHHHhhcccCCCCCCCCCcccccccccccCC----------CC
Q 002283 680 GVKEYTVYKIRVWSG-----KDQWEVERRYRDFYTLYRRLKSLSADEGWSLPSPWSSVEKESRKIFGN----------VS 744 (943)
Q Consensus 680 GvksYTVY~IrV~sg-----~~eWtV~RRYSEF~eLHqrLke~Fp~~~L~LP~p~~sVeK~PKKlFGn----------~s 744 (943)
|.++||+|.|++++. ...|.|.|||+||.+||.+|++.|+..++.+|++| +|+++++ ++
T Consensus 14 ~~~~y~~Y~I~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~~~iPp~P------~K~~~~~~~~~~~~~~~~~ 87 (124)
T cd07281 14 GMNAYVVYKVTTQTSLLMFRSKHFTVKRRFSDFLGLYEKLSEKHSQNGFIVPPPP------EKSLIGMTKVKVGKEDSSS 87 (124)
T ss_pred CcCCeEEEEEEEecCCCccCCCceEEEeehHHHHHHHHHHHHhCCCCCcEeCCCC------Cccccccchhhcccccccc
Confidence 568999999999874 36899999999999999999999976443333222 4666553 58
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCChhhhhccccc
Q 002283 745 PLVVAHRSVLIQECLQSILHSSSFSSPPNALITFLSQ 781 (943)
Q Consensus 745 peFIEeRRkaLE~YLQ~LLsh~~~ls~SevL~eFLe~ 781 (943)
.+|||+||++||.||++|++| +.+..+..|+.||+.
T Consensus 88 ~~fie~Rr~~Le~FL~~l~~~-p~l~~s~~~~~FL~~ 123 (124)
T cd07281 88 AEFLERRRAALERYLQRIVSH-PSLLQDPDVREFLEK 123 (124)
T ss_pred HHHHHHHHHHHHHHHHHHhcC-cccccChHHHHHhCC
Confidence 999999999999999999997 567778999999974
No 19
>cd07295 PX_Grd19 The phosphoinositide binding Phox Homology domain of fungal Grd19. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Grd19 is involved in the localization of late Golgi membrane proteins in yeast. Grp19 associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, and functions as a cargo-specific adaptor for the retromer.
Probab=99.75 E-value=4.2e-18 Score=160.47 Aligned_cols=93 Identities=25% Similarity=0.272 Sum_probs=80.1
Q ss_pred CccccEEEEEEEEEC-----CceEEEEeecccHHHHHHHHHhhcccCC-CCCCCCCcccccccccccCCCCHHHHHHHHH
Q 002283 680 GVKEYTVYKIRVWSG-----KDQWEVERRYRDFYTLYRRLKSLSADEG-WSLPSPWSSVEKESRKIFGNVSPLVVAHRSV 753 (943)
Q Consensus 680 GvksYTVY~IrV~sg-----~~eWtV~RRYSEF~eLHqrLke~Fp~~~-L~LP~p~~sVeK~PKKlFGn~speFIEeRRk 753 (943)
|.+.||+|.|.++++ ...|+|+|||+||.+||.+|++.++... .+|| +|+++++++++|||+||+
T Consensus 15 g~~~y~~Y~I~~~t~~~~f~~~~~~V~RRysdF~~L~~~L~~~~~~~~iPplP---------~K~~~~~~~~~~ie~Rr~ 85 (116)
T cd07295 15 GRGMFTDYEIVCRTNIPAFKLRVSSVRRRYSDFEYFRDILERESPRVMIPPLP---------GKIFTNRFSDEVIEERRQ 85 (116)
T ss_pred CCCCEEEEEEEEEeCCccccccceEEecChhHHHHHHHHHHHHCCCCccCCCC---------CCccccCCCHHHHHHHHH
Confidence 678999999998763 3579999999999999999999998754 3666 478788899999999999
Q ss_pred HHHHHHHHHhccCCCCC-Chhhhhcccccc
Q 002283 754 LIQECLQSILHSSSFSS-PPNALITFLSQQ 782 (943)
Q Consensus 754 aLE~YLQ~LLsh~~~ls-~SevL~eFLe~~ 782 (943)
+||.||+.|+.|+ .+. .++.|..||+..
T Consensus 86 ~Le~fL~~i~~~p-~l~~~s~~~~~FL~~~ 114 (116)
T cd07295 86 GLETFLQSVAGHP-LLQTGSKVLAAFLQDP 114 (116)
T ss_pred HHHHHHHHHhcCH-hhhhCCHHHHHhcCCC
Confidence 9999999999975 555 689999999865
No 20
>cd07286 PX_SNX18 The phosphoinositide binding Phox Homology domain of Sorting Nexin 18. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX18, like SNX9, contains an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature. The PX-BAR structural unit helps determine specific membrane localization. SNX18 is localized to peripheral endosomal structures, and acts in a trafficki
Probab=99.75 E-value=3.9e-18 Score=163.88 Aligned_cols=92 Identities=22% Similarity=0.289 Sum_probs=82.4
Q ss_pred cCccccEEEEEEEEECCceEEEEeecccHHHHHHHHHhhcccCC-CCCCCCCcccccccccccCCCCHHHHHHHHHHHHH
Q 002283 679 VGVKEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEG-WSLPSPWSSVEKESRKIFGNVSPLVVAHRSVLIQE 757 (943)
Q Consensus 679 vGvksYTVY~IrV~sg~~eWtV~RRYSEF~eLHqrLke~Fp~~~-L~LP~p~~sVeK~PKKlFGn~speFIEeRRkaLE~ 757 (943)
.|+++|++|+|+... ..|.|.|||+||.+||.+|.+.||... ++|| +|+++|+++++||++||++||.
T Consensus 15 ~G~~~Yv~Y~I~~~~--~~~~V~RRYsDF~~L~~~L~~~~p~~~IPpLP---------~K~~~g~f~~~FIe~Rr~~Lq~ 83 (127)
T cd07286 15 KGMKSYISYKLVPSH--TGLQVHRRYKHFDWLYARLAEKFPVISVPHIP---------EKQATGRFEEDFISKRRKGLIW 83 (127)
T ss_pred CCCcCEEEEEEEEec--CceEEECCCcHHHHHHHHHHHHCCCcEeCCCc---------CCCcCCCCCHHHHHHHHHHHHH
Confidence 478999999998754 469999999999999999999999874 3788 5999999999999999999999
Q ss_pred HHHHHhccCCCCCChhhhhcccccc
Q 002283 758 CLQSILHSSSFSSPPNALITFLSQQ 782 (943)
Q Consensus 758 YLQ~LLsh~~~ls~SevL~eFLe~~ 782 (943)
||++|+.| +.+..+..|..||+.+
T Consensus 84 FL~ria~h-p~L~~s~~~~~FL~~~ 107 (127)
T cd07286 84 WMDHMCSH-PVLARCDAFQHFLTCP 107 (127)
T ss_pred HHHHHHcC-cccccChHHHHHhcCC
Confidence 99999997 5677889999999976
No 21
>cd06865 PX_SNX_like The phosphoinositide binding Phox Homology domain of SNX-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. This subfamily is composed of uncharacterized proteins, predominantly from plants, with similarity to sorting nexins. A few members show a similar domain architectu
Probab=99.75 E-value=4.9e-18 Score=160.27 Aligned_cols=92 Identities=22% Similarity=0.358 Sum_probs=79.6
Q ss_pred CccccEEEEEEEEEC-----CceEEEEeecccHHHHHHHHHhhcccCCC-CCCCCCcccccccccccCC---CCHHHHHH
Q 002283 680 GVKEYTVYKIRVWSG-----KDQWEVERRYRDFYTLYRRLKSLSADEGW-SLPSPWSSVEKESRKIFGN---VSPLVVAH 750 (943)
Q Consensus 680 GvksYTVY~IrV~sg-----~~eWtV~RRYSEF~eLHqrLke~Fp~~~L-~LP~p~~sVeK~PKKlFGn---~speFIEe 750 (943)
|.++||+|.|++.+. ...|+|.|||+||.+||.+|++.||...+ +|| +|++++. ++++|||+
T Consensus 19 ~~~~ytvY~I~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP---------~K~~~~~~~~~~~~fie~ 89 (120)
T cd06865 19 GGPPYISYKVTTRTNIPSYTHGEFTVRRRFRDVVALADRLAEAYRGAFVPPRP---------DKSVVESQVMQSAEFIEQ 89 (120)
T ss_pred CCCCEEEEEEEEecCCCCCCCCceEEEeehHHHHHHHHHHHHHCCCCeeCCCc---------CCccccccccCCHHHHHH
Confidence 457999999999875 36899999999999999999999988643 555 5777743 69999999
Q ss_pred HHHHHHHHHHHHhccCCCCCChhhhhccccc
Q 002283 751 RSVLIQECLQSILHSSSFSSPPNALITFLSQ 781 (943)
Q Consensus 751 RRkaLE~YLQ~LLsh~~~ls~SevL~eFLe~ 781 (943)
||++||.||+.|+.| +.+..++.|+.||+.
T Consensus 90 Rr~~Le~fL~~i~~~-p~l~~s~~~~~FL~~ 119 (120)
T cd06865 90 RRVALEKYLNRLAAH-PVIGLSDELRVFLTL 119 (120)
T ss_pred HHHHHHHHHHHHHcC-ceeecCcHHHHhccC
Confidence 999999999999997 567888999999975
No 22
>cd06860 PX_SNX7_30_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 7 and 30. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. This subfamily consists of SNX7, SNX30, and similar proteins. They harbor a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal
Probab=99.75 E-value=6e-18 Score=158.85 Aligned_cols=92 Identities=25% Similarity=0.404 Sum_probs=79.4
Q ss_pred CccccEEEEEEEEEC-----CceEEEEeecccHHHHHHHHHhhcccCC-CCCCCCCcccccccccc----cCCCCHHHHH
Q 002283 680 GVKEYTVYKIRVWSG-----KDQWEVERRYRDFYTLYRRLKSLSADEG-WSLPSPWSSVEKESRKI----FGNVSPLVVA 749 (943)
Q Consensus 680 GvksYTVY~IrV~sg-----~~eWtV~RRYSEF~eLHqrLke~Fp~~~-L~LP~p~~sVeK~PKKl----FGn~speFIE 749 (943)
|.++|++|.|++++. ...|.|.|||+||.+||++|.+.+|... ++|| +|+. +++++++||+
T Consensus 14 ~~~~y~~Y~I~~~~~~~~~~~~~~~V~RRysdF~~L~~~L~~~~p~~~iPpLP---------~K~~~~~~~~~~~~~fie 84 (116)
T cd06860 14 TLETYITYRVTTKTTRSEFDSSEYSVRRRYQDFLWLRQKLEESHPTHIIPPLP---------EKHSVKGLLDRFSPEFVA 84 (116)
T ss_pred CCcCEEEEEEEEeeCCCCcCCCceEEEeeHHHHHHHHHHHHHHCCCCccCCCC---------CcchhhhhcccCCHHHHH
Confidence 567999999998863 4689999999999999999999998764 4777 4666 3568999999
Q ss_pred HHHHHHHHHHHHHhccCCCCCChhhhhccccc
Q 002283 750 HRSVLIQECLQSILHSSSFSSPPNALITFLSQ 781 (943)
Q Consensus 750 eRRkaLE~YLQ~LLsh~~~ls~SevL~eFLe~ 781 (943)
+||++||.||+.|+.| +.+..+..|+.||+.
T Consensus 85 ~Rr~~Le~fL~~i~~h-p~l~~s~~l~~FLt~ 115 (116)
T cd06860 85 TRMRALHKFLNRIVEH-PVLSFNEHLKVFLTA 115 (116)
T ss_pred HHHHHHHHHHHHHHcC-cccccCcHHHHhhcC
Confidence 9999999999999997 567778899999974
No 23
>cd07300 PX_SNX20 The phosphoinositide binding Phox Homology domain of Sorting Nexin 20. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX20 interacts with P-Selectin glycoprotein ligand-1 (PSGL-1), a surface-expressed mucin that acts as a ligand for the selectin family of adhesion proteins. The PX dom
Probab=99.75 E-value=5.5e-18 Score=159.41 Aligned_cols=93 Identities=30% Similarity=0.478 Sum_probs=80.2
Q ss_pred CccccEEEEEEE-EEC---CceEEEEeecccHHHHHHHHHhhcccC--CCCCCCCCcccccccccccCCCCHHHHHHHHH
Q 002283 680 GVKEYTVYKIRV-WSG---KDQWEVERRYRDFYTLYRRLKSLSADE--GWSLPSPWSSVEKESRKIFGNVSPLVVAHRSV 753 (943)
Q Consensus 680 GvksYTVY~IrV-~sg---~~eWtV~RRYSEF~eLHqrLke~Fp~~--~L~LP~p~~sVeK~PKKlFGn~speFIEeRRk 753 (943)
+.++||+|+|.+ +++ ...|+|.||||||.+||.+|.+.|+.. .++|| +|+++|+++++||++||+
T Consensus 14 ~~~~yv~Y~i~~~~~g~~~~~~~~v~RRYSdF~~L~~~L~~~~~~~~~~~~lP---------~K~~~~~~~~~~ie~Rr~ 84 (114)
T cd07300 14 TISKHVVYQIIVIQTGSFDCNKVVIERRYSDFLKLHQELLSDFSEELEDVVFP---------KKKLTGNFSEEIIAERRV 84 (114)
T ss_pred CCcceEEEEEEEEEecCccCceEEEEeccHhHHHHHHHHHHHccccCCCCCCC---------CCcccCCCCHHHHHHHHH
Confidence 456899999976 344 468999999999999999999988753 34778 599999999999999999
Q ss_pred HHHHHHHHHhccCCCCCChhhhhcccccc
Q 002283 754 LIQECLQSILHSSSFSSPPNALITFLSQQ 782 (943)
Q Consensus 754 aLE~YLQ~LLsh~~~ls~SevL~eFLe~~ 782 (943)
+||.||+.|++| +.+..+..+++||...
T Consensus 85 ~Le~yL~~l~~~-p~l~~s~~~~~FL~~~ 112 (114)
T cd07300 85 ALRDYLTLLYSL-RFVRRSQAFQDFLTHP 112 (114)
T ss_pred HHHHHHHHHhcC-HhhhcChHHHHHhCCc
Confidence 999999999997 4677788999999865
No 24
>cd06866 PX_SNX8_Mvp1p_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 8 and yeast Mvp1p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles.
Probab=99.74 E-value=7.3e-18 Score=156.15 Aligned_cols=87 Identities=22% Similarity=0.218 Sum_probs=78.6
Q ss_pred ccEEEEEEEEECCceEEEEeecccHHHHHHHHHhhcccCCC-CCCCCCcccccccccccCCCCHHHHHHHHHHHHHHHHH
Q 002283 683 EYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEGW-SLPSPWSSVEKESRKIFGNVSPLVVAHRSVLIQECLQS 761 (943)
Q Consensus 683 sYTVY~IrV~sg~~eWtV~RRYSEF~eLHqrLke~Fp~~~L-~LP~p~~sVeK~PKKlFGn~speFIEeRRkaLE~YLQ~ 761 (943)
.|++|.|++.. ..|.|.||||||.+||++|++.||...+ +|| ||+++++++++||++||++||.||+.
T Consensus 17 ~y~~Y~i~~~~--~~~~V~RRYsdF~~L~~~L~~~~p~~~iP~lP---------~K~~~~~~~~~~ie~Rr~~Le~fL~~ 85 (105)
T cd06866 17 KHVEYEVSSKR--FKSTVYRRYSDFVWLHEYLLKRYPYRMVPALP---------PKRIGGSADREFLEARRRGLSRFLNL 85 (105)
T ss_pred CCEEEEEEEec--CCEEEEEEhHHHHHHHHHHHHHCCCCcCCCCC---------CCccccCCCHHHHHHHHHHHHHHHHH
Confidence 89999999865 5899999999999999999999987543 777 69999999999999999999999999
Q ss_pred HhccCCCCCChhhhhccccc
Q 002283 762 ILHSSSFSSPPNALITFLSQ 781 (943)
Q Consensus 762 LLsh~~~ls~SevL~eFLe~ 781 (943)
|+.| +.+..+++|+.||+.
T Consensus 86 l~~~-p~l~~s~~l~~FL~~ 104 (105)
T cd06866 86 VARH-PVLSEDELVRTFLTE 104 (105)
T ss_pred HhcC-hhhccChHHHhhcCC
Confidence 9996 567888999999974
No 25
>cd07285 PX_SNX9 The phosphoinositide binding Phox Homology domain of Sorting Nexin 9. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX9, also known as SH3PX1, is a cytosolic protein that interacts with proteins associated with clathrin-coated pits such as Cdc-42-associated tyrosine kinase 2 (ACK2). It contains an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature. T
Probab=99.74 E-value=8.3e-18 Score=161.52 Aligned_cols=95 Identities=22% Similarity=0.330 Sum_probs=82.7
Q ss_pred ccCccccEEEEEEEEECCceEEEEeecccHHHHHHHHHhhcccC--CCCCCCCCcccccccccccCCCCHHHHHHHHHHH
Q 002283 678 LVGVKEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADE--GWSLPSPWSSVEKESRKIFGNVSPLVVAHRSVLI 755 (943)
Q Consensus 678 vvGvksYTVY~IrV~sg~~eWtV~RRYSEF~eLHqrLke~Fp~~--~L~LP~p~~sVeK~PKKlFGn~speFIEeRRkaL 755 (943)
+.|+++|++|+|+.+++ .|.|.||||||.+||++|.+.|+.. .++|| +|+++|+++++||++||++|
T Consensus 14 ~~g~~~Yv~Y~I~~~~~--~~~V~RRYsDF~~L~~~L~~~~~~~i~vPplP---------~K~~~g~f~~~FIe~Rr~~L 82 (126)
T cd07285 14 MYGLKSYIEYQLTPTNT--NRSVNHRYKHFDWLYERLLVKFGLAIPIPSLP---------DKQVTGRFEEEFIKMRMERL 82 (126)
T ss_pred CCCCcCeEEEEEEeccC--CeEeeCCccHHHHHHHHHHHhcCCCcccCCCC---------CccccCCCCHHHHHHHHHHH
Confidence 35789999999987654 7999999999999999999998643 24677 59999999999999999999
Q ss_pred HHHHHHHhccCCCCCChhhhhcccccccc
Q 002283 756 QECLQSILHSSSFSSPPNALITFLSQQES 784 (943)
Q Consensus 756 E~YLQ~LLsh~~~ls~SevL~eFLe~~~s 784 (943)
|.||++|++| +.+..+..|+.||+..+.
T Consensus 83 e~FL~ri~~h-P~L~~~~~l~~FL~~~~~ 110 (126)
T cd07285 83 QAWMTRMCRH-PVISESEVFQQFLNFRDE 110 (126)
T ss_pred HHHHHHHHcC-cCcCCCcHHHHHhCCCCH
Confidence 9999999997 567888999999998743
No 26
>cd07277 PX_RUN The phosphoinositide binding Phox Homology domain of uncharacterized proteins containing PX and RUN domains. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized proteins containing an N-terminal RUN domain and a C-terminal PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction. The RUN domain is found in GTPases in the Rap and Rab families and may play a role in Ras-like signaling pathways.
Probab=99.74 E-value=8.2e-18 Score=159.40 Aligned_cols=94 Identities=26% Similarity=0.461 Sum_probs=81.6
Q ss_pred CccccEEEEEEEEECCceEEEEeecccHHHHHHHHHhhcccCC-CCCCCCCcccccccccccCCCCHHHHHHHHHHHHHH
Q 002283 680 GVKEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEG-WSLPSPWSSVEKESRKIFGNVSPLVVAHRSVLIQEC 758 (943)
Q Consensus 680 GvksYTVY~IrV~sg~~eWtV~RRYSEF~eLHqrLke~Fp~~~-L~LP~p~~sVeK~PKKlFGn~speFIEeRRkaLE~Y 758 (943)
|.+.|++|.|+|+.+...|+|.||||||++||++|++.+|... ++|| ||+++|+++.+|||+||.+||.|
T Consensus 14 ~~~~y~vY~I~v~~~~~~w~V~RRYseF~~L~~~L~~~~~~~~~~~~P---------~Kk~~g~~~~~~ie~Rr~~Le~y 84 (118)
T cd07277 14 GSDAHHVYQVYIRIRDDEWNVYRRYSEFYELHKKLKKKFPVVRSFDFP---------PKKAIGNKDAKFVEERRKRLQVY 84 (118)
T ss_pred CCCCEEEEEEEEEECCCEEEEEecHHHHHHHHHHHHHHCCCCCCCCCC---------CCCccCCCCHHHHHHHHHHHHHH
Confidence 5679999999999988999999999999999999999998754 4788 69999999999999999999999
Q ss_pred HHHHhccCCCCCChhhhhcccccccc
Q 002283 759 LQSILHSSSFSSPPNALITFLSQQES 784 (943)
Q Consensus 759 LQ~LLsh~~~ls~SevL~eFLe~~~s 784 (943)
|+.|+.| .++.+..+..||+-..-
T Consensus 85 L~~ll~~--~~~~~~~~~~~~~~~~~ 108 (118)
T cd07277 85 LRRVVNT--LIQTSPELTACPSKETL 108 (118)
T ss_pred HHHHHHH--HHHhCchhhcCCCHHHH
Confidence 9999996 44555567777776543
No 27
>cd07293 PX_SNX3 The phosphoinositide binding Phox Homology domain of Sorting Nexin 3. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX3 associates with early endosomes through a PX domain-mediated interaction with phosphatidylinositol-3-phosphate (PI3P). It associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, and functions as a cargo-specific adaptor f
Probab=99.73 E-value=1.1e-17 Score=159.26 Aligned_cols=93 Identities=25% Similarity=0.370 Sum_probs=78.1
Q ss_pred CccccEEEEEEEEECC-----ceEEEEeecccHHHHHHHHHhhcccCCCCCCCCCccccccccccc---------CCCCH
Q 002283 680 GVKEYTVYKIRVWSGK-----DQWEVERRYRDFYTLYRRLKSLSADEGWSLPSPWSSVEKESRKIF---------GNVSP 745 (943)
Q Consensus 680 GvksYTVY~IrV~sg~-----~eWtV~RRYSEF~eLHqrLke~Fp~~~L~LP~p~~sVeK~PKKlF---------Gn~sp 745 (943)
|.++||+|.|+++++. ..|+|+|||+||.+||+.|++......++|| +|+++ |++++
T Consensus 15 ~~~~y~~Y~I~~~t~~p~~~~~~~~V~RRYsDF~~L~~~L~~~~~~~iPpLP---------~K~~~~~~~~~~~~~~~~~ 85 (123)
T cd07293 15 GRGRFTTYEIRLKTNLPIFKLKESTVRRRYSDFEWLRSELERESKVVVPPLP---------GKALFRQLPFRGDDGIFDD 85 (123)
T ss_pred CCcCEEEEEEEEEeCCCccccCceEEECCchHHHHHHHHHHhccCCccCCCC---------CCchhhhcccccccCCCCH
Confidence 6789999999998743 6899999999999999999876333224677 46665 47899
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCChhhhhcccccc
Q 002283 746 LVVAHRSVLIQECLQSILHSSSFSSPPNALITFLSQQ 782 (943)
Q Consensus 746 eFIEeRRkaLE~YLQ~LLsh~~~ls~SevL~eFLe~~ 782 (943)
+|||+||++||.||++|++| +.++.+..|+.||+-.
T Consensus 86 ~fie~Rr~~Le~FL~~i~~h-P~l~~~~~l~~FL~~~ 121 (123)
T cd07293 86 SFIEERKQGLEQFLNKVAGH-PLAQNERCLHMFLQDE 121 (123)
T ss_pred HHHHHHHHHHHHHHHHHHcC-cccccCcHHHhhcCCC
Confidence 99999999999999999997 5688889999999753
No 28
>cd06863 PX_Atg24p The phosphoinositide binding Phox Homology domain of yeast Atg24p, an autophagic degradation protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The yeast Atg24p is a sorting nexin (SNX) which is involved in membrane fusion events at the vacuolar surface during pexophagy. This is facilitated via binding of Atg24p to phosphatidylinositol 3-phosphate (PI3P) through its PX domain. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway.
Probab=99.73 E-value=1.3e-17 Score=155.97 Aligned_cols=92 Identities=25% Similarity=0.322 Sum_probs=79.2
Q ss_pred CccccEEEEEEEEECC-----ceEEEEeecccHHHHHHHHHhhcccCC-CCCCCCCccccccccccc-----CCCCHHHH
Q 002283 680 GVKEYTVYKIRVWSGK-----DQWEVERRYRDFYTLYRRLKSLSADEG-WSLPSPWSSVEKESRKIF-----GNVSPLVV 748 (943)
Q Consensus 680 GvksYTVY~IrV~sg~-----~eWtV~RRYSEF~eLHqrLke~Fp~~~-L~LP~p~~sVeK~PKKlF-----Gn~speFI 748 (943)
|.++|++|.|++++.. ..|.|.|||+||.+||+.|.+.||... ++|| +|+.+ ++++++||
T Consensus 15 ~~~~y~~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP---------~K~~~~~~~~~~~~~~~i 85 (118)
T cd06863 15 SSDTYISYLITTKTNLPSFSRKEFKVRRRYSDFVFLHECLSNDFPACVVPPLP---------DKHRLEYITGDRFSPEFI 85 (118)
T ss_pred CccCEEEEEEEEeeCCCCcccCceEEEecHHHHHHHHHHHHHHCcCCcCCCCC---------CccccccccccCCCHHHH
Confidence 5679999999998742 579999999999999999999998864 3777 46654 45899999
Q ss_pred HHHHHHHHHHHHHHhccCCCCCChhhhhccccc
Q 002283 749 AHRSVLIQECLQSILHSSSFSSPPNALITFLSQ 781 (943)
Q Consensus 749 EeRRkaLE~YLQ~LLsh~~~ls~SevL~eFLe~ 781 (943)
++||++||.||+.|+.| +.+..++.|..||+.
T Consensus 86 e~Rr~~Le~fL~~i~~~-p~l~~s~~l~~FL~s 117 (118)
T cd06863 86 TRRAQSLQRFLRRISLH-PVLSQSKILHQFLES 117 (118)
T ss_pred HHHHHHHHHHHHHHhcC-cccccCcHHHhhcCC
Confidence 99999999999999997 577888999999964
No 29
>cd06897 PX_SNARE The phosphoinositide binding Phox Homology domain of SNARE proteins from fungi. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. This subfamily is composed of fungal proteins similar to Saccharomyces cerevisiae Vam7p. They contain an N-terminal PX domain and a C-terminal SNARE domain. The SNARE (Soluble NSF attachment protein receptor) family of proteins are integral membrane proteins that serve as key factors for vesicular trafficking. Vam7p is anchored at the vacuolar membrane through the specific interaction of its PX domain with phosphatidylinositol-3-phosphate (PI3P) present in bilayers. It plays an essential role in vacuole fusion. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction.
Probab=99.73 E-value=8.8e-18 Score=153.92 Aligned_cols=91 Identities=32% Similarity=0.475 Sum_probs=81.8
Q ss_pred cccEEEEEEEEECCceEEEEeecccHHHHHHHHHhhcccCC-CCCCCCCcccccccccccC--CCCHHHHHHHHHHHHHH
Q 002283 682 KEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEG-WSLPSPWSSVEKESRKIFG--NVSPLVVAHRSVLIQEC 758 (943)
Q Consensus 682 ksYTVY~IrV~sg~~eWtV~RRYSEF~eLHqrLke~Fp~~~-L~LP~p~~sVeK~PKKlFG--n~speFIEeRRkaLE~Y 758 (943)
+.|++|.|+|......|.|.||||||.+||++|++.++... ++|| +|++++ ++++++||+||++||.|
T Consensus 13 ~~~~~Y~I~v~~~~~~~~v~rRYseF~~L~~~L~~~~~~~~~p~lP---------~K~~~~~~~~~~~~ie~Rr~~Le~y 83 (108)
T cd06897 13 KPYTVYNIQVRLPLRSYTVSRRYSEFVALHKQLESEVGIEPPYPLP---------PKSWFLSTSSNPKLVEERRVGLEAF 83 (108)
T ss_pred CCeEEEEEEEEcCCceEEEEcchHHHHHHHHHHHHHcCCCCCCCCC---------CcCEecccCCCHHHHHHHHHHHHHH
Confidence 58999999999988999999999999999999999998764 4788 588888 89999999999999999
Q ss_pred HHHHhccC-CCCCChhhhhccccc
Q 002283 759 LQSILHSS-SFSSPPNALITFLSQ 781 (943)
Q Consensus 759 LQ~LLsh~-~~ls~SevL~eFLe~ 781 (943)
|+.|+.++ +.+..+.+|++||+.
T Consensus 84 L~~l~~~~~~~l~~s~~~~~FL~~ 107 (108)
T cd06897 84 LRALLNDEDSRWRNSPAVKEFLNL 107 (108)
T ss_pred HHHHHcCCccchhcCHHHHHHhCC
Confidence 99999974 156778999999986
No 30
>cd06880 PX_SNX22 The phosphoinositide binding Phox Homology domain of Sorting Nexin 22. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX22 may be involved in recruiting other proteins to the membrane via protein-protein and protein-ligand interaction. The biological function of SNX22 is not yet known.
Probab=99.73 E-value=1.5e-17 Score=155.09 Aligned_cols=87 Identities=30% Similarity=0.504 Sum_probs=77.4
Q ss_pred cccEEEEEEEEECCceEEEEeecccHHHHHHHHHhhcccCCCCCCCCCcccccccccccCCCCHHHHHHHHHHHHHHHHH
Q 002283 682 KEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEGWSLPSPWSSVEKESRKIFGNVSPLVVAHRSVLIQECLQS 761 (943)
Q Consensus 682 ksYTVY~IrV~sg~~eWtV~RRYSEF~eLHqrLke~Fp~~~L~LP~p~~sVeK~PKKlFGn~speFIEeRRkaLE~YLQ~ 761 (943)
+.||+|.|+|..++..|+|.||||||.+||++|++.++ .++|| +|+ +++++++||++||.+||.||+.
T Consensus 17 ~~y~~Y~I~v~~~~~~~~v~RRYseF~~Lh~~L~~~~~--~p~~P---------~K~-~~~~~~~~ie~Rr~~Le~yL~~ 84 (110)
T cd06880 17 KPYTVFTIEVLVNGRRHTVEKRYSEFHALHKKLKKSIK--TPDFP---------PKR-VRNWNPKVLEQRRQGLEAYLQG 84 (110)
T ss_pred CCeEEEEEEEEECCeEEEEEccHHHHHHHHHHHHHHCC--CCCCC---------CCC-ccCCCHHHHHHHHHHHHHHHHH
Confidence 68999999999988899999999999999999999887 34677 466 4789999999999999999999
Q ss_pred HhccCCCCCChhhhhccccccc
Q 002283 762 ILHSSSFSSPPNALITFLSQQE 783 (943)
Q Consensus 762 LLsh~~~ls~SevL~eFLe~~~ 783 (943)
|+.++. .+.+|.+||++..
T Consensus 85 ll~~~~---~s~~l~~FL~~~~ 103 (110)
T cd06880 85 LLKINE---LPKQLLDFLGVRH 103 (110)
T ss_pred HHcCcc---ccHHHHHHhCCCC
Confidence 999754 4789999999874
No 31
>cd06862 PX_SNX9_18_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 9 and 18. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX9, SNX18, and similar proteins. They contain an N-terminal Src Homology 3 (SH3) domain, a PX domain, and a C-terminal Bin/Amphiphysin/Rvs (BAR) domain. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is loca
Probab=99.73 E-value=1.4e-17 Score=159.17 Aligned_cols=93 Identities=22% Similarity=0.342 Sum_probs=83.0
Q ss_pred cCccccEEEEEEEEECCceEEEEeecccHHHHHHHHHhhcccCC-CCCCCCCcccccccccccCCCCHHHHHHHHHHHHH
Q 002283 679 VGVKEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEG-WSLPSPWSSVEKESRKIFGNVSPLVVAHRSVLIQE 757 (943)
Q Consensus 679 vGvksYTVY~IrV~sg~~eWtV~RRYSEF~eLHqrLke~Fp~~~-L~LP~p~~sVeK~PKKlFGn~speFIEeRRkaLE~ 757 (943)
.|.++||+|.|.+.. ..|.|.|||+||.+||++|.+.||... ++|| +|+++++++++||++||++||.
T Consensus 15 ~g~~~y~~Y~I~~~~--~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP---------~K~~~~~~~~~fie~Rr~~Le~ 83 (125)
T cd06862 15 KGLKSFIAYQITPTH--TNVTVSRRYKHFDWLYERLVEKYSCIAIPPLP---------EKQVTGRFEEDFIEKRRERLEL 83 (125)
T ss_pred CCCcCEEEEEEEEec--CcEEEEEecHHHHHHHHHHHHHCCCCCCCCCC---------CCccccCCCHHHHHHHHHHHHH
Confidence 477899999999865 589999999999999999999999753 3777 6899999999999999999999
Q ss_pred HHHHHhccCCCCCChhhhhccccccc
Q 002283 758 CLQSILHSSSFSSPPNALITFLSQQE 783 (943)
Q Consensus 758 YLQ~LLsh~~~ls~SevL~eFLe~~~ 783 (943)
||+.|+.| +.+..++.|..||+..+
T Consensus 84 fL~~I~~~-p~l~~s~~~~~FL~~~~ 108 (125)
T cd06862 84 WMNRLARH-PVLSQSEVFRHFLTCTD 108 (125)
T ss_pred HHHHHhcC-HhhhcChHHHHHcCCcc
Confidence 99999997 56788899999999763
No 32
>cd06894 PX_SNX3_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 3 and related proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily is composed of SNX3, SNX12, and fungal Grd19. Grd19 is involved in the localization of late Golgi membrane proteins in yeast. SNX3/Grp19 associates with the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the
Probab=99.72 E-value=1.6e-17 Score=157.93 Aligned_cols=92 Identities=23% Similarity=0.358 Sum_probs=77.9
Q ss_pred CccccEEEEEEEEEC-----CceEEEEeecccHHHHHHHHHhhcccCC-CCCCCCCccccccccccc---------CCCC
Q 002283 680 GVKEYTVYKIRVWSG-----KDQWEVERRYRDFYTLYRRLKSLSADEG-WSLPSPWSSVEKESRKIF---------GNVS 744 (943)
Q Consensus 680 GvksYTVY~IrV~sg-----~~eWtV~RRYSEF~eLHqrLke~Fp~~~-L~LP~p~~sVeK~PKKlF---------Gn~s 744 (943)
|.++||+|.|+++++ ...|+|.|||+||.+||++|++. |... ++|| +|+++ ++++
T Consensus 15 ~~~~y~~Y~I~~~t~~~~~~~~~~~V~RRYsdF~~L~~~L~~~-~~~~iPpLP---------~K~~~~~~~~~~~~~~~~ 84 (123)
T cd06894 15 GKKRFTDYEVRMRTNLPVFKKKESSVRRRYSDFEWLRSELERD-SKIVVPPLP---------GKALKRQLPFRGDDGIFE 84 (123)
T ss_pred CCcCEEEEEEEEecCCcccccCccEEEecCHHHHHHHHHHHHc-CCCccCCCC---------CCceecccccccccCCCC
Confidence 578999999999864 36899999999999999999976 4433 3677 46654 6799
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCChhhhhcccccc
Q 002283 745 PLVVAHRSVLIQECLQSILHSSSFSSPPNALITFLSQQ 782 (943)
Q Consensus 745 peFIEeRRkaLE~YLQ~LLsh~~~ls~SevL~eFLe~~ 782 (943)
++|||+||++||.||+.|+.| +.+..+.+|+.||+..
T Consensus 85 ~~fie~Rr~~L~~fL~~i~~h-p~l~~s~~~~~FL~~~ 121 (123)
T cd06894 85 EEFIEERRKGLETFINKVAGH-PLAQNEKCLHMFLQEE 121 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHcC-hhhccCCHHHHhcCCC
Confidence 999999999999999999997 5778889999999864
No 33
>cd07283 PX_SNX30 The phosphoinositide binding Phox Homology domain of Sorting Nexin 30. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX30 harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to the sorting nexins SNX1-2, SNX4-8, and SNX32
Probab=99.72 E-value=1.8e-17 Score=156.48 Aligned_cols=92 Identities=22% Similarity=0.342 Sum_probs=78.6
Q ss_pred CccccEEEEEEEEECC-----ceEEEEeecccHHHHHHHHHhhcccCC-CCCCCCCccccccccccc----CCCCHHHHH
Q 002283 680 GVKEYTVYKIRVWSGK-----DQWEVERRYRDFYTLYRRLKSLSADEG-WSLPSPWSSVEKESRKIF----GNVSPLVVA 749 (943)
Q Consensus 680 GvksYTVY~IrV~sg~-----~eWtV~RRYSEF~eLHqrLke~Fp~~~-L~LP~p~~sVeK~PKKlF----Gn~speFIE 749 (943)
|++.|++|+|++++.. ..|.|.|||+||.|||+.|.+.+|... ++|| +|+++ ++++++|||
T Consensus 14 ~~~~y~~Y~I~t~t~~~~~~~~~~~V~RRYsDF~~L~~~L~~~~p~~~iPpLP---------~K~~~~~~~~~~~~~fie 84 (116)
T cd07283 14 TMETYITYRVTTKTTRTEFDLPEYSVRRRYQDFDWLRNKLEESQPTHLIPPLP---------EKFVVKGVVDRFSEEFVE 84 (116)
T ss_pred CCcCeEEEEEEEecCCCCcccCceEEeCCccHHHHHHHHHHHhCCCcccCCCC---------CcccccccccCCCHHHHH
Confidence 5689999999998743 589999999999999999999998754 4777 36543 457999999
Q ss_pred HHHHHHHHHHHHHhccCCCCCChhhhhccccc
Q 002283 750 HRSVLIQECLQSILHSSSFSSPPNALITFLSQ 781 (943)
Q Consensus 750 eRRkaLE~YLQ~LLsh~~~ls~SevL~eFLe~ 781 (943)
+||++||.||++|+.| +.+..++.|..||+.
T Consensus 85 ~Rr~~Le~FL~~i~~h-p~L~~s~~~~~FLt~ 115 (116)
T cd07283 85 TRRKALDKFLKRIADH-PVLSFNEHFNVFLTA 115 (116)
T ss_pred HHHHHHHHHHHHHHcC-cccccCcHHHHhhcC
Confidence 9999999999999997 567788899999974
No 34
>cd06893 PX_SNX19 The phosphoinositide binding Phox Homology domain of Sorting Nexin 19. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX19 contains an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some SNXs. These domains are also found in SNX13 and SNX14, which also contain a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNX19 interacts with IA-2, a major autoantigen found
Probab=99.72 E-value=1.1e-17 Score=161.27 Aligned_cols=93 Identities=25% Similarity=0.375 Sum_probs=75.8
Q ss_pred CccccEEEEEEEEEC----------------CceEEEEeecccHHHHHHHHHhhcccCC---CCCCCCCcccccccccc-
Q 002283 680 GVKEYTVYKIRVWSG----------------KDQWEVERRYRDFYTLYRRLKSLSADEG---WSLPSPWSSVEKESRKI- 739 (943)
Q Consensus 680 GvksYTVY~IrV~sg----------------~~eWtV~RRYSEF~eLHqrLke~Fp~~~---L~LP~p~~sVeK~PKKl- 739 (943)
|+.+||+|+|++.+. ...|+|.||||||.+||++|++..+... ..+| ||++
T Consensus 17 g~~~y~~Y~V~~~t~~~~~~~~~~~~~~~~~~~~~~V~RRYsDF~~L~~~L~~~~~~~~~~~~~~P---------~k~~p 87 (132)
T cd06893 17 GTHPYTLYTVQYETILDVQSEQNPNAASEQPLATHTVNRRFREFLTLQTRLEENPKFRKIMNVKGP---------PKRLF 87 (132)
T ss_pred CCCCeEEEEEEeccCcchhcccccccccccccCeEEEECchHHHHHHHHHHHHccCcccccccCCC---------CccCC
Confidence 788999999998642 2579999999999999999998643222 1344 2333
Q ss_pred ---cCCCCHHHHHHHHHHHHHHHHHHhccCCCCCChhhhhcccccc
Q 002283 740 ---FGNVSPLVVAHRSVLIQECLQSILHSSSFSSPPNALITFLSQQ 782 (943)
Q Consensus 740 ---FGn~speFIEeRRkaLE~YLQ~LLsh~~~ls~SevL~eFLe~~ 782 (943)
+|+++++|||+||++||.|||.|++| +.+..+++|+.||..+
T Consensus 88 ~lp~g~~d~~fie~Rr~~Le~fL~~l~~~-p~l~~s~~l~~FL~~~ 132 (132)
T cd06893 88 DLPFGNMDKDKIEARRGLLETFLRQLCSI-PEISNSEEVQEFLAYG 132 (132)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHcC-HhhhcCHHHHHHHccC
Confidence 78999999999999999999999997 5678889999999863
No 35
>cd06871 PX_MONaKA The phosphoinositide binding Phox Homology domain of Modulator of Na,K-ATPase. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. MONaKA (Modulator of Na,K-ATPase) binds the plasma membrane ion transporter, Na,K-ATPase, and modulates its enzymatic and ion pump activities. It modulates brain Na,K-ATPase and may be involved in regulating electrical excitability and synaptic transmission. MONaKA contains an N-terminal PX domain and a C-terminal catalytic kinase domain. The PX domain interacts with PIs and plays a role in targeting proteins to PI-enriched membranes.
Probab=99.72 E-value=2.4e-17 Score=156.11 Aligned_cols=91 Identities=31% Similarity=0.481 Sum_probs=78.8
Q ss_pred CccccEEEEEEEEEC---CceEEEEeecccHHHHHHHHHhhcccCCCCCCCCCcccccccccccCCCCHHHHHHHHHHHH
Q 002283 680 GVKEYTVYKIRVWSG---KDQWEVERRYRDFYTLYRRLKSLSADEGWSLPSPWSSVEKESRKIFGNVSPLVVAHRSVLIQ 756 (943)
Q Consensus 680 GvksYTVY~IrV~sg---~~eWtV~RRYSEF~eLHqrLke~Fp~~~L~LP~p~~sVeK~PKKlFGn~speFIEeRRkaLE 756 (943)
+.++||+|.|+|+.+ ...|+|+||||||.+||++|+... ..++|| ||+++|+++++||++||.+||
T Consensus 17 ~~~~~t~Y~I~v~~~~~~~~~w~V~RRYsdF~~Lh~~L~~~~--~~~plP---------~K~~~g~~~~~~ie~Rr~~Le 85 (120)
T cd06871 17 NIQSHTEYIIRVQRGPSPENSWQVIRRYNDFDLLNASLQISG--ISLPLP---------PKKLIGNMDREFIAERQQGLQ 85 (120)
T ss_pred CccCcEEEEEEEEECCcCCceeEEEeeHHHHHHHHHHHHHcC--CCCCCC---------CccccCCCCHHHHHHHHHHHH
Confidence 457899999999874 468999999999999999999642 224677 699999999999999999999
Q ss_pred HHHHHHhccCCCCCChhhhhcccccc
Q 002283 757 ECLQSILHSSSFSSPPNALITFLSQQ 782 (943)
Q Consensus 757 ~YLQ~LLsh~~~ls~SevL~eFLe~~ 782 (943)
.||+.|++| +.+..++.++.||++.
T Consensus 86 ~yL~~l~~~-p~l~~s~~~~~FL~~~ 110 (120)
T cd06871 86 NYLNVILMN-PILASCLPVKKFLDPN 110 (120)
T ss_pred HHHHHHHcC-hhhccCHHHHHhcCcc
Confidence 999999997 5678889999999854
No 36
>cd07284 PX_SNX7 The phosphoinositide binding Phox Homology domain of Sorting Nexin 7. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. SNX7 harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to the sorting nexins SNX1-2, SNX4-6, SNX8, SNX30,
Probab=99.71 E-value=2.8e-17 Score=155.27 Aligned_cols=92 Identities=20% Similarity=0.331 Sum_probs=79.1
Q ss_pred CccccEEEEEEEEEC-----CceEEEEeecccHHHHHHHHHhhcccCC-CCCCCCCccccccccccc----CCCCHHHHH
Q 002283 680 GVKEYTVYKIRVWSG-----KDQWEVERRYRDFYTLYRRLKSLSADEG-WSLPSPWSSVEKESRKIF----GNVSPLVVA 749 (943)
Q Consensus 680 GvksYTVY~IrV~sg-----~~eWtV~RRYSEF~eLHqrLke~Fp~~~-L~LP~p~~sVeK~PKKlF----Gn~speFIE 749 (943)
|++.|++|+|++++. ...|.|.|||+||.|||..|.+.+|... ++|| +|+++ ++++++||+
T Consensus 14 ~~~~y~~Y~V~t~t~~~~~~~~~~~V~RRysDF~~L~~~L~~~~p~~~iPplP---------~K~~~~~~~~~~~~~fie 84 (116)
T cd07284 14 AIETFITYRVMTKTSRSEFDSSEFEVRRRYQDFLWLKGRLEEAHPTLIIPPLP---------EKFVMKGMVERFNEDFIE 84 (116)
T ss_pred CCcCeEEEEEEEeeCCCCcCCCceEEeCCchHHHHHHHHHHHHCCCceeCCCC---------CcchhhhccccCCHHHHH
Confidence 678999999999873 3589999999999999999999998864 4777 36544 457899999
Q ss_pred HHHHHHHHHHHHHhccCCCCCChhhhhccccc
Q 002283 750 HRSVLIQECLQSILHSSSFSSPPNALITFLSQ 781 (943)
Q Consensus 750 eRRkaLE~YLQ~LLsh~~~ls~SevL~eFLe~ 781 (943)
+||++||.||++|+.| +.+..++.|+.||+.
T Consensus 85 ~Rr~~Le~FL~ri~~h-p~L~~s~~~~~FL~~ 115 (116)
T cd07284 85 TRRKALHKFLNRIADH-PTLTFNEDFKIFLTA 115 (116)
T ss_pred HHHHHHHHHHHHHHcC-cccccChHHHHhhcC
Confidence 9999999999999997 567778899999974
No 37
>cd06859 PX_SNX1_2_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 1 and 2. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX1, SNX2, and similar proteins. They harbor a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. Both domains have been shown to determine the specific membrane-targeting of SNX1. SNX1 and SNX2 are components of the retromer complex,
Probab=99.71 E-value=2.5e-17 Score=152.20 Aligned_cols=92 Identities=24% Similarity=0.398 Sum_probs=79.3
Q ss_pred CccccEEEEEEEEEC-----CceEEEEeecccHHHHHHHHHhhcccCC-CCCCCCCcccccccccccCCCCHH--HHHHH
Q 002283 680 GVKEYTVYKIRVWSG-----KDQWEVERRYRDFYTLYRRLKSLSADEG-WSLPSPWSSVEKESRKIFGNVSPL--VVAHR 751 (943)
Q Consensus 680 GvksYTVY~IrV~sg-----~~eWtV~RRYSEF~eLHqrLke~Fp~~~-L~LP~p~~sVeK~PKKlFGn~spe--FIEeR 751 (943)
|.++||+|.|++... ...|.|+|||+||.+||++|++.+|... ++|| +|+++++++.+ +|++|
T Consensus 14 ~~~~y~~Y~I~v~~~~~~~~~~~~~v~RRyseF~~L~~~L~~~~~~~~~P~lP---------~k~~~~~~~~~~~~ie~R 84 (114)
T cd06859 14 GMSAYVVYRVTTKTNLPDFKKSEFSVLRRYSDFLWLYERLVEKYPGRIVPPPP---------EKQAVGRFKVKFEFIEKR 84 (114)
T ss_pred CccCEEEEEEEeecCCCCCCCCceEEEEChHHHHHHHHHHHHHCCCCEeCCCC---------CCcccCccCccHHHHHHH
Confidence 567999999999873 3579999999999999999999998653 3666 58899987655 99999
Q ss_pred HHHHHHHHHHHhccCCCCCChhhhhccccc
Q 002283 752 SVLIQECLQSILHSSSFSSPPNALITFLSQ 781 (943)
Q Consensus 752 RkaLE~YLQ~LLsh~~~ls~SevL~eFLe~ 781 (943)
|++||.||+.|+.| +.+..+++|+.||+.
T Consensus 85 r~~L~~fL~~i~~~-p~l~~s~~~~~Fl~~ 113 (114)
T cd06859 85 RAALERFLRRIAAH-PVLRKDPDFRLFLES 113 (114)
T ss_pred HHHHHHHHHHHhcC-hhhccCcHHHhhcCC
Confidence 99999999999997 567888999999974
No 38
>cd07287 PX_RPK118_like The phosphoinositide binding Phox Homology domain of RPK118-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily bear similarity to human RPK118, which contains an N-terminal PX domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phosphate (SPP), a lipid messenger involved in many cellular events. RPK118 may be involved in transmitting SPP-mediated signaling. It also binds the antioxidant peroxiredoxin-3 (PRDX3) and may be involved in the transport of PRDX3 from the cytoplasm to its site of function in the mitochondria. Members of this subfamily also show similarity to sorting nexin 15 (SNX15), which contains PX and MIT domains but does not contain a kinase doma
Probab=99.71 E-value=3.9e-17 Score=154.97 Aligned_cols=93 Identities=25% Similarity=0.294 Sum_probs=77.1
Q ss_pred cccEEEEEEEEECC-------ceEEEEeecccHHHHHHHHHhhcccC---CCCCCCCCcccccccccccCCCCHHHHHHH
Q 002283 682 KEYTVYKIRVWSGK-------DQWEVERRYRDFYTLYRRLKSLSADE---GWSLPSPWSSVEKESRKIFGNVSPLVVAHR 751 (943)
Q Consensus 682 ksYTVY~IrV~sg~-------~eWtV~RRYSEF~eLHqrLke~Fp~~---~L~LP~p~~sVeK~PKKlFGn~speFIEeR 751 (943)
+.||+|+|+++... ..|+|+||||||.+||+.|++.|+.. +..+|+.+ +|++||+++++|||+|
T Consensus 15 ~gyt~Y~V~~~~~~~~~~~~~~~~~V~RRYSDF~~L~~~L~~~~~~~~~~~~~~Pp~p------~k~~~g~~d~~fIe~R 88 (118)
T cd07287 15 KGYTVYKVTARIVSRKNPEDVQEIVVWKRYSDFKKLHKDLWQIHKNLCRQSELFPPFA------KAKVFGRFDESVIEER 88 (118)
T ss_pred CCeEEEEEEEEecCCCCcccceeEEEeCCchHHHHHHHHHHHhccccccCCcccCCCC------CceeecCCCHHHHHHH
Confidence 35999999887642 47999999999999999999998753 22234221 5899999999999999
Q ss_pred HHHHHHHHHHHhccCCCCCChhhhhccccc
Q 002283 752 SVLIQECLQSILHSSSFSSPPNALITFLSQ 781 (943)
Q Consensus 752 RkaLE~YLQ~LLsh~~~ls~SevL~eFLe~ 781 (943)
|++||.|||.|++| +.+..+..|++||.-
T Consensus 89 R~~Le~fL~~i~~~-p~l~~s~~~~~Fl~~ 117 (118)
T cd07287 89 RQCAEDLLQFSANI-PALYNSSQLEDFFKG 117 (118)
T ss_pred HHHHHHHHHHHhcC-ccccCChHHHHHhcC
Confidence 99999999999997 467788999999964
No 39
>cd06883 PX_PI3K_C2 The phosphoinositide binding Phox Homology Domain of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. They are also involved in the regulation of clathrin-mediated membrane trafficking as well as ATP-dependent priming of neurosecretory granule exocytosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and d
Probab=99.71 E-value=2.5e-17 Score=153.50 Aligned_cols=92 Identities=22% Similarity=0.360 Sum_probs=80.4
Q ss_pred ccccEEEEEEEEECC--ceEEEEeecccHHHHHHHHHhhcccCCC-CCCCCCcccccccccccCC-CCHHHHHHHHHHHH
Q 002283 681 VKEYTVYKIRVWSGK--DQWEVERRYRDFYTLYRRLKSLSADEGW-SLPSPWSSVEKESRKIFGN-VSPLVVAHRSVLIQ 756 (943)
Q Consensus 681 vksYTVY~IrV~sg~--~eWtV~RRYSEF~eLHqrLke~Fp~~~L-~LP~p~~sVeK~PKKlFGn-~speFIEeRRkaLE 756 (943)
...|++|.|+|+..+ ..|+|.|||+||.+||++|++.||...+ .|| +|+++++ ..++++++||.+||
T Consensus 13 ~~~~~vY~I~V~~~~~~~~~~V~RRYseF~~Lh~~L~~~fp~~~lp~lP---------~k~~~~~~~~~~~~e~R~~~Le 83 (109)
T cd06883 13 PEKYYIYVVKVTRENQTEPSFVFRTFEEFQELHNKLSLLFPSLKLPSFP---------ARVVLGRSHIKQVAERRKIELN 83 (109)
T ss_pred CCceEEEEEEEEECCCCCeEEEEecHHHHHHHHHHHHHHCCCCcCCCCC---------CCcccCccchhHHHHHHHHHHH
Confidence 457999999998853 6799999999999999999999987653 666 4777876 56799999999999
Q ss_pred HHHHHHhccCCCCCChhhhhccccc
Q 002283 757 ECLQSILHSSSFSSPPNALITFLSQ 781 (943)
Q Consensus 757 ~YLQ~LLsh~~~ls~SevL~eFLe~ 781 (943)
.||+.|++.++.+..|+.|+.||.+
T Consensus 84 ~YL~~Ll~~~~~i~~s~~v~~F~~~ 108 (109)
T cd06883 84 SYLKSLFNASPEVAESDLVYTFFHP 108 (109)
T ss_pred HHHHHHHcCCHHHhcCHHHHHhcCC
Confidence 9999999987789999999999975
No 40
>cd06881 PX_SNX15_like The phosphoinositide binding Phox Homology domain of Sorting Nexin 15-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily have similarity to sorting nexin 15 (SNX15), which contains an N-terminal PX domain and a C-terminal Microtubule Interacting and Trafficking (MIT) domain. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNX15 plays a role in protein trafficking processes in the endocytic pathway and the trans-Golgi network. The PX domain of SNX15 interacts with the PDGF receptor and is responsible for the membrane association of the protein. Other members of this subfamily cont
Probab=99.71 E-value=3.3e-17 Score=154.11 Aligned_cols=90 Identities=29% Similarity=0.323 Sum_probs=77.8
Q ss_pred cccEEEEEEEEEC-------CceEEEEeecccHHHHHHHHHhhcccCC-----CCCCCCCcccccccccccCCCCHHHHH
Q 002283 682 KEYTVYKIRVWSG-------KDQWEVERRYRDFYTLYRRLKSLSADEG-----WSLPSPWSSVEKESRKIFGNVSPLVVA 749 (943)
Q Consensus 682 ksYTVY~IrV~sg-------~~eWtV~RRYSEF~eLHqrLke~Fp~~~-----L~LP~p~~sVeK~PKKlFGn~speFIE 749 (943)
++||+|.|.+.+. ...|.|.||||||.+||++|++.++... ++|| +|++||+++++||+
T Consensus 15 ~~~t~Y~I~~~~~~~~~~~~~~~~~V~rRYsdF~~L~~~L~~~~~~~~~~~~~P~lP---------~K~~~g~~~~~~Ie 85 (117)
T cd06881 15 KGYTEYKITSKVFSRSVPEDVSEVVVWKRYSDFKKLHRELSRLHKQLYLSGSFPPFP---------KGKYFGRFDAAVIE 85 (117)
T ss_pred CceEEEEEEEEecCCCCccccceEEEECcHHHHHHHHHHHHHHhhhccccCcCCCCC---------CCcccCCCCHHHHH
Confidence 5799999999852 1489999999999999999999886532 2555 69999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCCCChhhhhccccc
Q 002283 750 HRSVLIQECLQSILHSSSFSSPPNALITFLSQ 781 (943)
Q Consensus 750 eRRkaLE~YLQ~LLsh~~~ls~SevL~eFLe~ 781 (943)
+||++||.||+.|++| +.+..++.|+.||+-
T Consensus 86 eRr~~Le~fL~~i~~~-p~l~~s~~~~~Fl~~ 116 (117)
T cd06881 86 ERRQAILELLDFVGNH-PALYQSSAFQQFFEE 116 (117)
T ss_pred HHHHHHHHHHHHHhCC-HhhhcChHHHHHhcc
Confidence 9999999999999997 567788999999974
No 41
>cd06864 PX_SNX4 The phosphoinositide binding Phox Homology domain of Sorting Nexin 4. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It shows a similar domain architecture as SNX1-2, among others, containing a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain. SNX4 is implicated in the regulation of
Probab=99.71 E-value=3.6e-17 Score=156.67 Aligned_cols=91 Identities=21% Similarity=0.218 Sum_probs=77.6
Q ss_pred ccccEEEEEEEEECC---------ceEEEEeecccHHHHHHHHHhhcccCC-CCCCCCCcccccccccc--------cCC
Q 002283 681 VKEYTVYKIRVWSGK---------DQWEVERRYRDFYTLYRRLKSLSADEG-WSLPSPWSSVEKESRKI--------FGN 742 (943)
Q Consensus 681 vksYTVY~IrV~sg~---------~eWtV~RRYSEF~eLHqrLke~Fp~~~-L~LP~p~~sVeK~PKKl--------FGn 742 (943)
.++||+|.|++++.. ..|+|+|||+||.+||++|++.||... ++|| +|++ .++
T Consensus 20 ~~~y~vY~I~~~~~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP---------~K~~~~~~~~~~~~~ 90 (129)
T cd06864 20 KETYTVYLIETKIVEHESEEGLSKKLSSLWRRYSEFELLRNYLVVTYPYVIVPPLP---------EKRAMFMWQKLSSDT 90 (129)
T ss_pred CCCeEEEEEEEEecCCCcccccccCceEEEeCcHHHHHHHHHHHHHCCCCCCCCCC---------CcceecccccccccC
Confidence 468999999998733 468999999999999999999998754 4777 3554 357
Q ss_pred CCHHHHHHHHHHHHHHHHHHhccCCCCCChhhhhccccc
Q 002283 743 VSPLVVAHRSVLIQECLQSILHSSSFSSPPNALITFLSQ 781 (943)
Q Consensus 743 ~speFIEeRRkaLE~YLQ~LLsh~~~ls~SevL~eFLe~ 781 (943)
++++||++||++||.||+.|++| +.+..++.|..||..
T Consensus 91 ~~~~fie~Rr~~Le~fL~~i~~~-p~l~~s~~l~~FL~~ 128 (129)
T cd06864 91 FDPDFVERRRAGLENFLLRVAGH-PELCQDKIFLEFLTH 128 (129)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcC-hhhhcCcHHHHhcCC
Confidence 89999999999999999999997 567888999999974
No 42
>cd06868 PX_HS1BP3 The phosphoinositide binding Phox Homology domain of HS1BP3. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Hematopoietic lineage cell-specific protein-1 (HS1) binding protein 3 (HS1BP3) associates with HS1 proteins through their SH3 domains, suggesting a role in mediating signaling. It has been reported that HS1BP3 might affect the IL-2 signaling pathway in hematopoietic lineage cells. Mutations in HS1BP3 may also be associated with familial Parkinson disease and essential tremor. HS1BP3 contains a PX domain, a leucine zipper, motifs similar to immunoreceptor tyrosine-based inhibitory motif and proline-rich regions. The PX domain interacts with PIs and plays a role in targeting proteins to PI-enriched membranes.
Probab=99.71 E-value=3.6e-17 Score=155.22 Aligned_cols=90 Identities=21% Similarity=0.297 Sum_probs=78.2
Q ss_pred CccccEEEEEEEEECC-------------ceEEEEeecccHHHHHHHHHhhcccCC-CCCCCCCcccccccccccCCCCH
Q 002283 680 GVKEYTVYKIRVWSGK-------------DQWEVERRYRDFYTLYRRLKSLSADEG-WSLPSPWSSVEKESRKIFGNVSP 745 (943)
Q Consensus 680 GvksYTVY~IrV~sg~-------------~eWtV~RRYSEF~eLHqrLke~Fp~~~-L~LP~p~~sVeK~PKKlFGn~sp 745 (943)
+.++||+|+|.+.+.. .+|.|.||||||.+||++|++.||... ++|| +|++++ ++
T Consensus 16 ~~~~y~~Y~I~~~t~~~~~~~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iPplP---------~K~~~~--~~ 84 (120)
T cd06868 16 TSSGHVLYQIVVVTRLAAFKSAKHKEEDVVQFMVSKKYSEFEELYKKLSEKYPGTILPPLP---------RKALFV--SE 84 (120)
T ss_pred CCCCeEEEEEEEEeCchhccCcccccCCceeEEEeCCcHHHHHHHHHHHHHCCCCCCCCCC---------CCcccC--CH
Confidence 4678999999987632 279999999999999999999998764 4677 588887 89
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCChhhhhccccc
Q 002283 746 LVVAHRSVLIQECLQSILHSSSFSSPPNALITFLSQ 781 (943)
Q Consensus 746 eFIEeRRkaLE~YLQ~LLsh~~~ls~SevL~eFLe~ 781 (943)
+||++||++||.||+.|++| +.+..++.|..||.+
T Consensus 85 ~~ie~Rr~~Le~fL~~i~~~-p~l~~s~~~~~FL~~ 119 (120)
T cd06868 85 SDIRERRAAFNDFMRFISKD-EKLANCPELLEFLGV 119 (120)
T ss_pred HHHHHHHHHHHHHHHHHHcC-hhhhcCHHHHHHhcC
Confidence 99999999999999999997 577888999999975
No 43
>cd06882 PX_p40phox The phosphoinositide binding Phox Homology domain of the p40phox subunit of NADPH oxidase. The PX domain is a phosphoinositide binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. p40phox contains an N-terminal PX domain, a central SH3 domain that binds p47phox, and a C-terminal PB1 domain that interacts with p67phox. It is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p40phox positively regulates NADPH oxidase in both phosphatidylinositol-3-phosphate (PI3P)-dependent and PI3P-independent manner. The PX domain is a phospholipid-binding module involved in the membrane targeting of proteins. The p40phox
Probab=99.71 E-value=2.9e-17 Score=156.38 Aligned_cols=94 Identities=23% Similarity=0.390 Sum_probs=81.1
Q ss_pred CccccEEEEEEEEEC-CceEEEEeecccHHHHHHHHHhhcccC---------CCCCCCCCcccccccccccCCCCHHHHH
Q 002283 680 GVKEYTVYKIRVWSG-KDQWEVERRYRDFYTLYRRLKSLSADE---------GWSLPSPWSSVEKESRKIFGNVSPLVVA 749 (943)
Q Consensus 680 GvksYTVY~IrV~sg-~~eWtV~RRYSEF~eLHqrLke~Fp~~---------~L~LP~p~~sVeK~PKKlFGn~speFIE 749 (943)
|.+.|++|.|+|... +..|+|+|||+||.+||.+|++.||.. .+.|| +|++||+.+ +|++
T Consensus 16 ~~~~y~vY~I~v~~~~~~~~~V~RRYseF~~L~~~L~~~fp~~~~~~~~~~~lP~lP---------~k~~~~~~~-~~~e 85 (123)
T cd06882 16 GFTNYYVFVIEVKTKGGSKYLIYRRYRQFFALQSKLEERFGPEAGSSAYDCTLPTLP---------GKIYVGRKA-EIAE 85 (123)
T ss_pred CCCCEEEEEEEEEEcCCCEEEEEEEHHHHHHHHHHHHHhCCcccccCCCCCccCCCC---------CCeecCccH-HHHH
Confidence 678999999999864 468999999999999999999999853 12456 588899865 9999
Q ss_pred HHHHHHHHHHHHHhccCCCCCChhhhhccccccc
Q 002283 750 HRSVLIQECLQSILHSSSFSSPPNALITFLSQQE 783 (943)
Q Consensus 750 eRRkaLE~YLQ~LLsh~~~ls~SevL~eFLe~~~ 783 (943)
+||.+||.||+.|+++++.++.++.|..||....
T Consensus 86 ~Rr~~Le~yl~~Ll~~p~~i~~~~~v~~Fl~~~~ 119 (123)
T cd06882 86 RRIPLLNRYMKELLSLPVWVLMDEDVRLFFYQTE 119 (123)
T ss_pred HHHHHHHHHHHHHHcCCHHhcCCHHHHHHhCCCc
Confidence 9999999999999998766788899999998764
No 44
>cd06884 PX_PI3K_C2_68D The phosphoinositide binding Phox Homology Domain of Class II Phosphoinositide 3-Kinases similar to the Drosophila PI3K_68D protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a
Probab=99.69 E-value=8.1e-17 Score=151.36 Aligned_cols=106 Identities=25% Similarity=0.319 Sum_probs=90.6
Q ss_pred cceEEEeccccccCCccccccccCccccEEEEEEEEE--CCceEEEEeecccHHHHHHHHHhhcccCCC-CCCCCCcccc
Q 002283 657 IDGVEVIGAKQKKGDVSLSERLVGVKEYTVYKIRVWS--GKDQWEVERRYRDFYTLYRRLKSLSADEGW-SLPSPWSSVE 733 (943)
Q Consensus 657 Id~VEVVgakqkkGdvS~servvGvksYTVY~IrV~s--g~~eWtV~RRYSEF~eLHqrLke~Fp~~~L-~LP~p~~sVe 733 (943)
|.+|+|.+..++. +.+.|++|.|+|+. +...|.|+|||+||.+||++|++.||...+ +||
T Consensus 1 i~~v~v~~~~kr~----------~~~~~yvY~I~V~~~~~~~~~~V~RrYseF~~Lh~~L~~~FP~~~lp~LP------- 63 (111)
T cd06884 1 IVRVTVVGFQKRY----------DPEKYYVYVVEVTRENQASPQHVFRTYKEFLELYQKLCRKFPLAKLHPLS------- 63 (111)
T ss_pred CeEEEEEEEEEEe----------cCCCeEEEEEEEEEcCCCceEEEEeEHHHHHHHHHHHHHHCCCCCCCCCC-------
Confidence 4577888876653 46789999999975 337899999999999999999999997654 677
Q ss_pred cccccccCC-CCHHHHHHHHHHHHHHHHHHhccCCCCCChhhhhccccc
Q 002283 734 KESRKIFGN-VSPLVVAHRSVLIQECLQSILHSSSFSSPPNALITFLSQ 781 (943)
Q Consensus 734 K~PKKlFGn-~speFIEeRRkaLE~YLQ~LLsh~~~ls~SevL~eFLe~ 781 (943)
+|.++|+ ..++++|+|++.||.||+.|++.++.++.++.+..|+.+
T Consensus 64 --~k~~~~~~~~~~v~e~R~~~L~~Yl~~Ll~~~~~is~~~~v~~FF~p 110 (111)
T cd06884 64 --TGSHVGRSNIKSVAEKRKQDIQQFLNSLFKMAEEVSHSDLVYTFFHP 110 (111)
T ss_pred --CceeecCCcchHHHHHHHHHHHHHHHHHHcCCHHHhcChHHHHhcCc
Confidence 4777776 678999999999999999999998999999999999875
No 45
>cd07288 PX_SNX15 The phosphoinositide binding Phox Homology domain of Sorting Nexin 15. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX15 contains an N-terminal PX domain and a C-terminal Microtubule Interacting and Trafficking (MIT) domain. It plays a role in protein trafficking processes in the endocytic pathway and the trans-Golgi network. The PX domain of SNX15 interacts with the PDGF receptor and is responsible for the membrane association of t
Probab=99.68 E-value=1.3e-16 Score=151.25 Aligned_cols=90 Identities=21% Similarity=0.220 Sum_probs=75.9
Q ss_pred cccEEEEEEEEEC-------CceEEEEeecccHHHHHHHHHhhcccCC------CCCCCCCcccccccccccCCCCHHHH
Q 002283 682 KEYTVYKIRVWSG-------KDQWEVERRYRDFYTLYRRLKSLSADEG------WSLPSPWSSVEKESRKIFGNVSPLVV 748 (943)
Q Consensus 682 ksYTVY~IrV~sg-------~~eWtV~RRYSEF~eLHqrLke~Fp~~~------L~LP~p~~sVeK~PKKlFGn~speFI 748 (943)
+.||+|+|+++.. ...|+|+||||||.+||++|...++... +++| +|+++|+++++||
T Consensus 15 ~gyt~Y~V~~~~~~~~~~~~~~~~~V~RRYSDF~~L~~~L~~~~~~~~~~~~~~Pp~P---------~K~~~g~f~~~fI 85 (118)
T cd07288 15 KGYTEYKVTAQFISKKQPEDVKEVVVWKRYSDLKKLHGELAYTHRNLFRRQEEFPPFP---------RAQVFGRFEAAVI 85 (118)
T ss_pred CCcEEEEEEEEecCCCCCccceEEEEECCchHHHHHHHHHHHhcccccccCCccCCCC---------CceeeccCCHHHH
Confidence 3599999998652 2589999999999999999998765421 2444 5899999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCCCChhhhhccccc
Q 002283 749 AHRSVLIQECLQSILHSSSFSSPPNALITFLSQ 781 (943)
Q Consensus 749 EeRRkaLE~YLQ~LLsh~~~ls~SevL~eFLe~ 781 (943)
|+||++||.||+.|++| +.+..+..|++||.-
T Consensus 86 eeRR~~Le~fL~~i~~~-p~l~~s~~~~~FL~~ 117 (118)
T cd07288 86 EERRNAAEAMLLFTVNI-PALYNSPQLKEFFRD 117 (118)
T ss_pred HHHHHHHHHHHHHHhCC-hhhcCChHHHHHHhc
Confidence 99999999999999997 467788999999963
No 46
>cd06876 PX_MDM1p The phosphoinositide binding Phox Homology domain of yeast MDM1p. The PX domain is a phosphoinositide binding (PI) module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Yeast MDM1p is a filament-like protein localized in punctate structures distributed throughout the cytoplasm. It plays an important role in nuclear and mitochondrial transmission to daughter buds. Members of this subfamily show similar domain architectures as some sorting nexins (SNXs). Some members are similar to SNX19 in that they contain an N-terminal PXA domain, a central PX domain, and a C-terminal domain that is conserved in some SNXs. Others are similar to SNX13 and SNX14, which also harbor these three domains as well as a regulator of G protein signaling (RGS) domain in between the PXA and PX domains. SNXs make up the largest group among PX domain containing proteins. They are involved in regul
Probab=99.68 E-value=1.7e-16 Score=151.95 Aligned_cols=90 Identities=28% Similarity=0.400 Sum_probs=79.7
Q ss_pred ccccEEEEEEEEECC-----ceEEEEeecccHHHHHHHHHhhcccCC-CCCCCCCcccccccccccCCC--CHHHHHHHH
Q 002283 681 VKEYTVYKIRVWSGK-----DQWEVERRYRDFYTLYRRLKSLSADEG-WSLPSPWSSVEKESRKIFGNV--SPLVVAHRS 752 (943)
Q Consensus 681 vksYTVY~IrV~sg~-----~eWtV~RRYSEF~eLHqrLke~Fp~~~-L~LP~p~~sVeK~PKKlFGn~--speFIEeRR 752 (943)
.+.|++|.|+|+... ..|.|.|||+||.+||.+|++.||... ++|| +|+++++. +.+||++||
T Consensus 35 ~k~~~~Y~I~v~~~~~~~~~~~w~V~RRYseF~~Lh~~L~~~~~~~~~p~~P---------~K~~~~~~~~~~~~ie~Rr 105 (133)
T cd06876 35 GKEFVVYLIEVQRLNNDDQSSGWVVARRYSEFLELHKYLKKRYPGVLKLDFP---------QKRKISLKYSKTLLVEERR 105 (133)
T ss_pred CceEEEEEEEEEEcCCCCCcccEEEEeEhHHHHHHHHHHHHHCcCCCCCCCC---------ccccccCccCCHHHHHHHH
Confidence 468999999999843 589999999999999999999998754 4777 58889886 899999999
Q ss_pred HHHHHHHHHHhccCCCCCChhhhhcccc
Q 002283 753 VLIQECLQSILHSSSFSSPPNALITFLS 780 (943)
Q Consensus 753 kaLE~YLQ~LLsh~~~ls~SevL~eFLe 780 (943)
.+||.||+.|+.+ +.+..+++|..||+
T Consensus 106 ~~Le~yL~~Ll~~-~~l~~s~~l~~FLs 132 (133)
T cd06876 106 KALEKYLQELLKI-PEVCEDEEFRKFLS 132 (133)
T ss_pred HHHHHHHHHHHcC-ccccCChHHHHhhc
Confidence 9999999999997 56888899999995
No 47
>cd07294 PX_SNX12 The phosphoinositide binding Phox Homology domain of Sorting Nexin 12. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Some SNXs are localized in early endosome structures such as clathrin-coated pits, while others are located in late structures of the endocytic pathway. The specific function of SNX12 has yet to be elucidated.
Probab=99.68 E-value=1.8e-16 Score=153.02 Aligned_cols=94 Identities=22% Similarity=0.317 Sum_probs=77.9
Q ss_pred CccccEEEEEEEEEC-----CceEEEEeecccHHHHHHHHHhhcccCCCCCCCCCcccccccccc---------cCCCCH
Q 002283 680 GVKEYTVYKIRVWSG-----KDQWEVERRYRDFYTLYRRLKSLSADEGWSLPSPWSSVEKESRKI---------FGNVSP 745 (943)
Q Consensus 680 GvksYTVY~IrV~sg-----~~eWtV~RRYSEF~eLHqrLke~Fp~~~L~LP~p~~sVeK~PKKl---------FGn~sp 745 (943)
|+++||+|.|+++++ ...|+|.|||+||.|||++|++......++|| +|++ .|++++
T Consensus 17 g~~~yt~Y~V~~~t~~~~~~~~~~~V~RRYsDF~~L~~~L~~~~g~~iPpLP---------~K~~~~~~~~~~~~~~~~~ 87 (132)
T cd07294 17 GRNRFTTYEVRMRTNLPIFKLKESCVRRRYSDFEWLKNELERDSKIVVPPLP---------GKALKRQLPFRGDEGIFEE 87 (132)
T ss_pred CCCCEEEEEEEEEeCCCCcccceeEEeCCccHHHHHHHHHHHcCCCccCCCC---------CCceeccccccccccCCCH
Confidence 788999999998863 36899999999999999999876322223666 3654 246899
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCCCChhhhhccccccc
Q 002283 746 LVVAHRSVLIQECLQSILHSSSFSSPPNALITFLSQQE 783 (943)
Q Consensus 746 eFIEeRRkaLE~YLQ~LLsh~~~ls~SevL~eFLe~~~ 783 (943)
+||++||++||.||++|++| +.+..+..|..||+...
T Consensus 88 ~fie~Rr~~Le~FL~~i~~h-p~l~~~~~l~~FL~~~~ 124 (132)
T cd07294 88 SFIEERRQGLEQFINKIAGH-PLAQNERCLHMFLQDET 124 (132)
T ss_pred HHHHHHHHHHHHHHHHHHcC-cccccChHHHHhcCCCC
Confidence 99999999999999999997 57788899999999874
No 48
>cd06874 PX_KIF16B_SNX23 The phosphoinositide binding Phox Homology domain of KIF16B kinesin or Sorting Nexin 23. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. KIF16B, also called sorting nexin 23 (SNX23), is a family-3 kinesin which harbors an N-terminal kinesin motor domain containing ATP and microtubule binding sites, a ForkHead Associated (FHA) domain, and a C-terminal PX domain. The PX domain of KIF16B binds to phosphatidylinositol-3-phosphate (PI3P) in early endosomes and plays a role in the transport of early endosomes to the plus end of microtubules. By regulating early endosome plus end motility, KIF16B modulates the balance between recycling and degradation of receptors. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endoso
Probab=99.67 E-value=2e-16 Score=151.81 Aligned_cols=85 Identities=22% Similarity=0.364 Sum_probs=74.6
Q ss_pred CccccEEEEEEEEECCceEEEEeecccHHHHHHHHHhhcccCC-CCCCCCCcccccccccccCCCCHHHHHHHHHHHHHH
Q 002283 680 GVKEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEG-WSLPSPWSSVEKESRKIFGNVSPLVVAHRSVLIQEC 758 (943)
Q Consensus 680 GvksYTVY~IrV~sg~~eWtV~RRYSEF~eLHqrLke~Fp~~~-L~LP~p~~sVeK~PKKlFGn~speFIEeRRkaLE~Y 758 (943)
|.+.|++|.|+|+..+..|+|+|||+||.+||++|++.||... ++|| +|++||+.+++|||+||.+||.|
T Consensus 14 ~~~~y~vY~I~v~~~~~~w~V~RRYseF~~Lh~~L~~~~p~~~~~~fP---------~Kk~~g~~~~~~ie~Rr~~Le~y 84 (127)
T cd06874 14 GKDEHFEFEVKITVLDETWTVFRRYSRFRELHKTMKLKYPEVAALEFP---------PKKLFGNKSERVAKERRRQLETY 84 (127)
T ss_pred CCCcEEEEEEEEEECCcEEEEEeeHHHHHHHHHHHHHHcCCCccCCCC---------CceecCCCCHHHHHHHHHHHHHH
Confidence 5678999999999988899999999999999999999998743 4677 69999999999999999999999
Q ss_pred HHHHhccCCCCCChh
Q 002283 759 LQSILHSSSFSSPPN 773 (943)
Q Consensus 759 LQ~LLsh~~~ls~Se 773 (943)
|+.|++....+..+.
T Consensus 85 L~~Ll~~~~~~~~~~ 99 (127)
T cd06874 85 LRNFFSVCLKLPACP 99 (127)
T ss_pred HHHHHHhchhccCCc
Confidence 999998655444444
No 49
>cd06879 PX_UP1_plant The phosphoinositide binding Phox Homology domain of uncharacterized plant proteins. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized fungal proteins containing a PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction.
Probab=99.64 E-value=4.6e-16 Score=151.58 Aligned_cols=90 Identities=20% Similarity=0.282 Sum_probs=78.3
Q ss_pred ccEEEEEEEEECC-----ceEEEEeecccHHHHHHHHHhhcccCCC-CCCCCCcccccccccccCCCCHHHHHHHHHHHH
Q 002283 683 EYTVYKIRVWSGK-----DQWEVERRYRDFYTLYRRLKSLSADEGW-SLPSPWSSVEKESRKIFGNVSPLVVAHRSVLIQ 756 (943)
Q Consensus 683 sYTVY~IrV~sg~-----~eWtV~RRYSEF~eLHqrLke~Fp~~~L-~LP~p~~sVeK~PKKlFGn~speFIEeRRkaLE 756 (943)
.-+.|.|+|..+. ..|.|.||||||.+||++|++.|+...+ ++| ||+++++++++|||+||++||
T Consensus 43 ~~~~y~VqV~v~~~~~~~~~w~V~RRYSDF~~L~~~L~~~~p~~~lPplP---------pK~~l~~~~~~fiEeRR~gLE 113 (138)
T cd06879 43 VDKFYRVQVGVQSPEGITTMRGVLRRFNDFLKLHTDLKKLFPKKKLPAAP---------PKGLLRMKNRALLEERRHSLE 113 (138)
T ss_pred ceEEEEEEEeecCCCCcceeeeeecCchHHHHHHHHHHHHCCCCcCCCCC---------CcccccCCCHHHHHHHHHHHH
Confidence 3467999888763 4899999999999999999999987543 466 699999999999999999999
Q ss_pred HHHHHHhccCCCCCChhhhhcccccc
Q 002283 757 ECLQSILHSSSFSSPPNALITFLSQQ 782 (943)
Q Consensus 757 ~YLQ~LLsh~~~ls~SevL~eFLe~~ 782 (943)
.||++|+.+ +.+..+..+.+||++.
T Consensus 114 ~fLq~Ll~~-p~l~~s~~v~~FLele 138 (138)
T cd06879 114 EWMGKLLSD-IDLSRSVPVASFLELE 138 (138)
T ss_pred HHHHHHHcC-ccccCCHHHHHHhCCC
Confidence 999999997 5688889999999863
No 50
>cd06886 PX_SNX27 The phosphoinositide binding Phox Homology domain of Sorting Nexin 27. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX27 contains an N-terminal PDZ domain followed by a PX domain and a Ras-Associated (RA) domain. It binds G protein-gated potassium (Kir3) channels, which play a role in neuronal excitability control, through its PDZ domain. SNX27 downregulates Kir3 channels by promoting their movement in the endosome, reducing surface
Probab=99.64 E-value=5.9e-16 Score=143.88 Aligned_cols=86 Identities=24% Similarity=0.342 Sum_probs=75.0
Q ss_pred cccEEEEEEEEECCceEEEEeecccHHHHHHHHHhhcccCC-CCCCCCCcccccccccccCCCCHHHHHHHHHHHHHHHH
Q 002283 682 KEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEG-WSLPSPWSSVEKESRKIFGNVSPLVVAHRSVLIQECLQ 760 (943)
Q Consensus 682 ksYTVY~IrV~sg~~eWtV~RRYSEF~eLHqrLke~Fp~~~-L~LP~p~~sVeK~PKKlFGn~speFIEeRRkaLE~YLQ 760 (943)
++|++|.|++.. .|.|.||||||.+||.+|++.|+... ++|| +|++++ ++.++||+||++||.||+
T Consensus 19 ~~yvvY~I~~~~---~~~v~rRyseF~~L~~~L~~~~~~~~~p~lP---------~K~~~~-~~~~~ie~Rr~~Le~fL~ 85 (106)
T cd06886 19 EKFVVYNIYMAG---RQLCSRRYREFANLHQNLKKEFPDFQFPKLP---------GKWPFS-LSEQQLDARRRGLEQYLE 85 (106)
T ss_pred CcEEEEEEEEcC---CEEEEechHHHHHHHHHHHHHcCCCCCCCCC---------CCCcCC-CCHHHHHHHHHHHHHHHH
Confidence 589999998852 79999999999999999999998754 3566 578775 689999999999999999
Q ss_pred HHhccCCCCCChhhhhccccc
Q 002283 761 SILHSSSFSSPPNALITFLSQ 781 (943)
Q Consensus 761 ~LLsh~~~ls~SevL~eFLe~ 781 (943)
.|+++ +.+..++.|++||+-
T Consensus 86 ~l~~~-p~l~~s~~~~~FL~~ 105 (106)
T cd06886 86 KVCSI-RVIGESDIMQDFLSD 105 (106)
T ss_pred HHhcC-cccccCHHHHHHhcc
Confidence 99996 567888999999973
No 51
>smart00312 PX PhoX homologous domain, present in p47phox and p40phox. Eukaryotic domain of unknown function present in phox proteins, PLD isoforms, a PI3K isoform.
Probab=99.63 E-value=7.6e-16 Score=137.68 Aligned_cols=91 Identities=31% Similarity=0.520 Sum_probs=72.5
Q ss_pred ccccEEEEEEEEECCceEEEEeecccHHHHHHHHHhhcccCC-CCCCCCCcccccccccccC---CCCHHHHHHHHHHHH
Q 002283 681 VKEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEG-WSLPSPWSSVEKESRKIFG---NVSPLVVAHRSVLIQ 756 (943)
Q Consensus 681 vksYTVY~IrV~sg~~eWtV~RRYSEF~eLHqrLke~Fp~~~-L~LP~p~~sVeK~PKKlFG---n~speFIEeRRkaLE 756 (943)
...|++|.|++..+...|.|.|||+||.+||++|.+.+|... ++|| +|++++ +.++++|++|+.+||
T Consensus 11 ~~~~~~~~v~~~~~~~~~~v~RRysdF~~L~~~L~~~~~~~~lP~lP---------~k~~~~~~~~~~~~~i~~R~~~L~ 81 (105)
T smart00312 11 KHYYYVIEIETKTGLEEWTVSRRYSDFLELHSKLKKHFPRRILPPLP---------PKKLFGRLNNFSEEFIEKRRRGLE 81 (105)
T ss_pred ceEEEEEEEEECCCCceEEEEEEHHHHHHHHHHHHHHCcCCCCCCCC---------CchhcccCCcCCHHHHHHHHHHHH
Confidence 344555555555455799999999999999999999998654 3566 477776 578999999999999
Q ss_pred HHHHHHhccCCCCCChhhhhcccc
Q 002283 757 ECLQSILHSSSFSSPPNALITFLS 780 (943)
Q Consensus 757 ~YLQ~LLsh~~~ls~SevL~eFLe 780 (943)
.||+.|++++.....+++|.+||+
T Consensus 82 ~yL~~l~~~~~~~~~s~~~~~Fl~ 105 (105)
T smart00312 82 RYLQSLLNHPELINESEVVLSFLE 105 (105)
T ss_pred HHHHHHHcCHhhhccChHHHHhcC
Confidence 999999997554443789999985
No 52
>cd06869 PX_UP2_fungi The phosphoinositide binding Phox Homology domain of uncharacterized fungal proteins. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to PI-enriched membranes. Members in this subfamily are uncharacterized fungal proteins containing a PX domain. PX domain harboring proteins have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction.
Probab=99.61 E-value=2.6e-15 Score=142.69 Aligned_cols=88 Identities=25% Similarity=0.308 Sum_probs=75.7
Q ss_pred ccCccccEEEEEEEEECCc---eEEEEeecccHHHHHHHHHhhcccCCC-CCCCCCcccccccccccCCCCHHHHHHHHH
Q 002283 678 LVGVKEYTVYKIRVWSGKD---QWEVERRYRDFYTLYRRLKSLSADEGW-SLPSPWSSVEKESRKIFGNVSPLVVAHRSV 753 (943)
Q Consensus 678 vvGvksYTVY~IrV~sg~~---eWtV~RRYSEF~eLHqrLke~Fp~~~L-~LP~p~~sVeK~PKKlFGn~speFIEeRRk 753 (943)
..+.+.|++|.|+|+.... .|+|.|||+||.+||++|++.||...+ +|| +|++ .++|+||.
T Consensus 27 ~~~~~~~~~Y~I~V~~~~~~~~~~~V~RRYsdF~~L~~~L~~~fp~~~lP~lP---------~K~~------~~~E~Rr~ 91 (119)
T cd06869 27 VNRSKHHYEFIIRVRREGEEYRTIYVARRYSDFKKLHHDLKKEFPGKKLPKLP---------HKDK------LPREKLRL 91 (119)
T ss_pred ccCCCceEEEEEEEEECCCCCCceEEEeeHHHHHHHHHHHHHHCcCCCCCCCc---------CCch------hHHHHHHH
Confidence 3467899999999999654 999999999999999999999998654 566 3554 68899999
Q ss_pred HHHHHHHHHhccCCCCCChhhhhccccc
Q 002283 754 LIQECLQSILHSSSFSSPPNALITFLSQ 781 (943)
Q Consensus 754 aLE~YLQ~LLsh~~~ls~SevL~eFLe~ 781 (943)
+||.||+.|+.+ +.++.+++|+.||..
T Consensus 92 ~Le~yL~~Ll~~-p~l~~s~~~~~FL~~ 118 (119)
T cd06869 92 SLRQYLRSLLKD-PEVAHSSILQEFLTS 118 (119)
T ss_pred HHHHHHHHHhcC-hhhhcChHHHHhhCC
Confidence 999999999996 678889999999964
No 53
>cd06885 PX_SNX17_31 The phosphoinositide binding Phox Homology domain of Sorting Nexins 17 and 31. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Members of this subfamily include sorting nexin 17 (SNX17), SNX31, and similar proteins. They contain an N-terminal PX domain followed by a truncated FERM (4.1, ezrin, radixin, and moesin) domain and a unique C-terminal region. SNXs make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX17 is known to regulate the trafficking and processing of a number of proteins. It binds some me
Probab=99.61 E-value=1.6e-15 Score=140.48 Aligned_cols=88 Identities=19% Similarity=0.370 Sum_probs=76.7
Q ss_pred CccccEEEEEEEEECCceEEEEeecccHHHHHHHHHhhcccCC-CCCCCCCcccccccccccCCCCHHHHHHHHHHHHHH
Q 002283 680 GVKEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEG-WSLPSPWSSVEKESRKIFGNVSPLVVAHRSVLIQEC 758 (943)
Q Consensus 680 GvksYTVY~IrV~sg~~eWtV~RRYSEF~eLHqrLke~Fp~~~-L~LP~p~~sVeK~PKKlFGn~speFIEeRRkaLE~Y 758 (943)
+.++||+|.|.|. ..|.+.||||||.+||.+|.+.|+... ++|| ||++++ ++.+|||+||.+||.|
T Consensus 14 ~~~~y~~Y~I~v~---~~~~~~rRYseF~~L~~~L~~~~~~~~~p~lP---------~K~~~~-~~~~~ie~Rr~~Le~y 80 (104)
T cd06885 14 GGSTYVAYNIHIN---GVLHCSVRYSQLHGLNEQLKKEFGNRKLPPFP---------PKKLLP-LTPAQLEERRLQLEKY 80 (104)
T ss_pred CCCcEEEEEEEEC---CcEEEEechHHHHHHHHHHHHHcCCCCCCCCC---------CCcccc-CCHHHHHHHHHHHHHH
Confidence 4579999999985 368999999999999999999998753 4777 689884 7889999999999999
Q ss_pred HHHHhccCCCCCChhhhhccccc
Q 002283 759 LQSILHSSSFSSPPNALITFLSQ 781 (943)
Q Consensus 759 LQ~LLsh~~~ls~SevL~eFLe~ 781 (943)
|+.|+.+ +.+..++.|+.||..
T Consensus 81 L~~l~~~-~~l~~s~~~~~FL~~ 102 (104)
T cd06885 81 LQAVVQD-PRIANSDIFNSFLLN 102 (104)
T ss_pred HHHHhcC-hhhccCHHHHHHHHh
Confidence 9999996 567888999999864
No 54
>cd06895 PX_PLD The phosphoinositide binding Phox Homology domain of Phospholipase D. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. Members of this subfamily contain PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. PLD activity has been detected in viruses, bacteria, yeast, plants, and mammals, but the PX domain is not present in PLDs from viruses and bacteria. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. Vertebrates contain two PLD isozymes, PLD1 and PLD2. PLD1 is located mainly in intracellular membr
Probab=99.60 E-value=2.7e-15 Score=146.27 Aligned_cols=101 Identities=22% Similarity=0.250 Sum_probs=79.6
Q ss_pred ccccEEEEEEEEECCceEEEEeecccHHHHHHHHHhhcccCCCCCCCCC--------------------ccccccccccc
Q 002283 681 VKEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEGWSLPSPW--------------------SSVEKESRKIF 740 (943)
Q Consensus 681 vksYTVY~IrV~sg~~eWtV~RRYSEF~eLHqrLke~Fp~~~L~LP~p~--------------------~sVeK~PKKlF 740 (943)
...|++|+|+|+.+...|+|.|||+||.+||++|+..++...++||..- ..++..|++..
T Consensus 20 ~~~~~~Y~Iev~~g~~~W~V~RRy~~F~~Lh~~L~~~~~~l~~p~p~k~~~~~~~~~~~~~~~~~~~~~~~lP~lP~~~~ 99 (140)
T cd06895 20 LLNPNLYTIELQHGQFTWTIKRRYKHFQELHQALKLYRALLRIPLPTRRHKEERLSLKRSRKPEREKKNRRLPSLPALPD 99 (140)
T ss_pred CCceEEEEEEEEECCEEEEEEeeHHHHHHHHHHHHHhcccccccCchHHhhhhhhccccccccccccccccCCCCCCccc
Confidence 4579999999999999999999999999999999987666555555200 01223344443
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHhccCCCCCChhhhhcccccc
Q 002283 741 GNVSPLVVAHRSVLIQECLQSILHSSSFSSPPNALITFLSQQ 782 (943)
Q Consensus 741 Gn~speFIEeRRkaLE~YLQ~LLsh~~~ls~SevL~eFLe~~ 782 (943)
....++++++||++||.||+.|+.+ +.+..+.++.+||+.+
T Consensus 100 ~~~~~~~ie~Rr~~Le~YL~~LL~~-~~~rn~~~~~~FLeVS 140 (140)
T cd06895 100 ILVSEEQLDSRKKQLENYLQNLLKI-PDYRNHPETLEFLEVS 140 (140)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHcC-hhhhcCHHHHhhhccC
Confidence 3348999999999999999999996 5677788999999863
No 55
>cd06888 PX_FISH The phosphoinositide binding Phox Homology domain of Five SH protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Five SH (FISH), also called Tks5, is a scaffolding protein and Src substrate that is localized in podosomes, which are electron-dense structures found in Src-transformed fibroblasts, osteoclasts, macrophages, and some invasive cancer cells. FISH contains an N-terminal PX domain and five Src homology 3 (SH3) domains. FISH binds and regulates some members of the ADAMs family of transmembrane metalloproteases, which function as sheddases and mediators of cell and matrix interactions. It is required for podosome formation, degradation of the extracellular matrix, and cancer cell invasion. This subfamily also includes proteins with a different number of SH3 domains than FISH, such as Tks4, which contains
Probab=99.60 E-value=4.9e-15 Score=141.07 Aligned_cols=106 Identities=23% Similarity=0.300 Sum_probs=88.2
Q ss_pred cceEEEeccccccCCccccccccCccccEEEEEEEEE-CCceEEEEeecccHHHHHHHHHhhcccCC----------CCC
Q 002283 657 IDGVEVIGAKQKKGDVSLSERLVGVKEYTVYKIRVWS-GKDQWEVERRYRDFYTLYRRLKSLSADEG----------WSL 725 (943)
Q Consensus 657 Id~VEVVgakqkkGdvS~servvGvksYTVY~IrV~s-g~~eWtV~RRYSEF~eLHqrLke~Fp~~~----------L~L 725 (943)
|..+.|++..++. +...|++|.|+|.. ++..|.|+|||+||.+||++|++.||... +.|
T Consensus 1 ~~~~~v~~~ekr~----------~~~k~y~Y~i~V~~~dg~~~~v~RrYs~F~~Lh~~L~~~FP~eag~~~~~~r~lP~l 70 (119)
T cd06888 1 VKDVKVIDVEKRR----------APSKHYVYIINVTWSDGSSNVIYRRYSKFFDLQMQLLDKFPIEGGQKDPSQRIIPFL 70 (119)
T ss_pred CeeEEEEEEEEEe----------cCCCcEEEEEEEEEcCCCEEEEEEeHHHHHHHHHHHHHhCchhhccCCCCccccCCC
Confidence 3567777776654 35678899999987 45789999999999999999999999741 245
Q ss_pred CCCCcccccccccccCCC-CHHHHHHHHHHHHHHHHHHhccCCCCCChhhhhccccc
Q 002283 726 PSPWSSVEKESRKIFGNV-SPLVVAHRSVLIQECLQSILHSSSFSSPPNALITFLSQ 781 (943)
Q Consensus 726 P~p~~sVeK~PKKlFGn~-speFIEeRRkaLE~YLQ~LLsh~~~ls~SevL~eFLe~ 781 (943)
| +|++||+. ..+++++|+..|+.||+.|+..++.++.++.+..|+.+
T Consensus 71 P---------~k~~~g~s~~~~~~e~R~~~L~~Yl~~Ll~lp~~Is~~~~v~~FF~p 118 (119)
T cd06888 71 P---------GKILFRRSHIRDVAVKRLKPIDEYCKALVRLPPHISQCDEVLRFFEA 118 (119)
T ss_pred C---------CCcccCcchhHHHHHHHHHHHHHHHHHHHcCCceeecCHHHHHhcCC
Confidence 5 47889874 46799999999999999999999999999999999876
No 56
>cd06093 PX_domain The Phox Homology domain, a phosphoinositide binding module. The PX domain is a phosphoinositide (PI) binding module involved in targeting proteins to membranes. Proteins containing PX domains interact with PIs and have been implicated in highly diverse functions such as cell signaling, vesicular trafficking, protein sorting, lipid modification, cell polarity and division, activation of T and B cells, and cell survival. Many members of this superfamily bind phosphatidylinositol-3-phosphate (PI3P) but in some cases, other PIs such as PI4P or PI(3,4)P2, among others, are the preferred substrates. In addition to protein-lipid interaction, the PX domain may also be involved in protein-protein interaction, as in the cases of p40phox, p47phox, and some sorting nexins (SNXs). The PX domain is conserved from yeast to humans and is found in more than 100 proteins. The majority of PX domain-containing proteins are SNXs, which play important roles in endosomal sorting.
Probab=99.59 E-value=9.7e-15 Score=128.70 Aligned_cols=91 Identities=35% Similarity=0.565 Sum_probs=79.2
Q ss_pred CccccEEEEEEEEECC-ceEEEEeecccHHHHHHHHHhhcccCC-CCCCCCCcccccccccccCCCCHHHHHHHHHHHHH
Q 002283 680 GVKEYTVYKIRVWSGK-DQWEVERRYRDFYTLYRRLKSLSADEG-WSLPSPWSSVEKESRKIFGNVSPLVVAHRSVLIQE 757 (943)
Q Consensus 680 GvksYTVY~IrV~sg~-~eWtV~RRYSEF~eLHqrLke~Fp~~~-L~LP~p~~sVeK~PKKlFGn~speFIEeRRkaLE~ 757 (943)
+.+.+++|.|+++... ..|.|+|||+||.+||+.|++.++... +.|| +|+++++.+.+++++|+.+|+.
T Consensus 13 ~~~~~~~Y~i~v~~~~~~~~~v~rrysdF~~L~~~L~~~~~~~~~p~lP---------~k~~~~~~~~~~~~~R~~~L~~ 83 (106)
T cd06093 13 GGKKYVVYIIEVTTQGGEEWTVYRRYSDFEELHEKLKKKFPGVILPPLP---------PKKLFGNLDPEFIEERRKQLEQ 83 (106)
T ss_pred CCCCEEEEEEEEEECCCCeEEEEeehHHHHHHHHHHHHHCCCCccCCCC---------CCcccccCCHHHHHHHHHHHHH
Confidence 3568999999999976 899999999999999999999998543 4677 4778888899999999999999
Q ss_pred HHHHHhccCCCCCChhhhhcccc
Q 002283 758 CLQSILHSSSFSSPPNALITFLS 780 (943)
Q Consensus 758 YLQ~LLsh~~~ls~SevL~eFLe 780 (943)
||+.|+.++. +..++.+..||+
T Consensus 84 yl~~l~~~~~-~~~~~~~~~Fl~ 105 (106)
T cd06093 84 YLQSLLNHPE-LRNSEELKEFLE 105 (106)
T ss_pred HHHHHhcCcc-cccChHHHHHhC
Confidence 9999999754 556789999986
No 57
>cd06887 PX_p47phox The phosphoinositide binding Phox Homology domain of the p47phox subunit of NADPH oxidase. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. p47phox is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox), which plays a key role in the ability of phagocytes to defend against bacterial infections. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p47phox is required for activation of NADH oxidase and plays a role in translocation. It contains an N-terminal PX domain, two Src Homology 3 (SH3) domains, and a C-terminal domain that contains PxxP motifs for binding SH3 domains. The PX domain of p47phox is unique in that it contains two distinct basic pockets on the membrane-binding surface: one
Probab=99.57 E-value=1.1e-14 Score=138.67 Aligned_cols=105 Identities=19% Similarity=0.213 Sum_probs=86.7
Q ss_pred cceEEEeccccccCCccccccccCccccEEEEEEEEE-CCceEEEEeecccHHHHHHHHHhhccc---------C-CCCC
Q 002283 657 IDGVEVIGAKQKKGDVSLSERLVGVKEYTVYKIRVWS-GKDQWEVERRYRDFYTLYRRLKSLSAD---------E-GWSL 725 (943)
Q Consensus 657 Id~VEVVgakqkkGdvS~servvGvksYTVY~IrV~s-g~~eWtV~RRYSEF~eLHqrLke~Fp~---------~-~L~L 725 (943)
|..|.|++..++. -.+.|++|.|+|+. .+..|.|+|||+||.+||++|++.||. . .+.|
T Consensus 1 ~~~~~~~~~~kr~----------~~~~~y~Y~i~v~~s~~~~~~v~RrYsdF~~L~~~L~~~fp~Eag~~~~~~r~lP~l 70 (118)
T cd06887 1 IRHIALLGFEKRF----------VPSQHYVYMFLVKWQDLSEKLVYRRFTEIYEFHKTLKEMFPIEAGDINKENRIIPHL 70 (118)
T ss_pred CeeEEEEEEEEee----------cCCCcEEEEEEEEEcCCcEEEEEeeHHHHHHHHHHHHHhCCccccccCCCCCcCCCC
Confidence 3456777765542 24689999999886 667899999999999999999999985 1 2356
Q ss_pred CCCCcccccccccccCCCCHHHHHHHHHHHHHHHHHHhccCCCCCChhhhhcccccc
Q 002283 726 PSPWSSVEKESRKIFGNVSPLVVAHRSVLIQECLQSILHSSSFSSPPNALITFLSQQ 782 (943)
Q Consensus 726 P~p~~sVeK~PKKlFGn~speFIEeRRkaLE~YLQ~LLsh~~~ls~SevL~eFLe~~ 782 (943)
| +|.+|++. +++|+||.+|+.||+.|+..++.++.++++..||.+.
T Consensus 71 P---------~k~~~~~~--~v~e~Rr~~L~~Yl~~Ll~lp~~i~~s~~v~~Ff~~~ 116 (118)
T cd06887 71 P---------APKWFDGQ--RAAENRQGTLTEYCSTLLSLPPKISRCPHVLDFFKVR 116 (118)
T ss_pred C---------CCcccCcc--hHHHHHHHHHHHHHHHHHhCCchhhCCHHHHHHhCcC
Confidence 6 47888864 9999999999999999998888899999999999864
No 58
>PF00787 PX: PX domain; InterPro: IPR001683 The PX (phox) domain [] occurs in a variety of eukaryotic proteins and have been implicated in highly diverse functions such as cell signalling, vesicular trafficking, protein sorting and lipid modification [, , ]. PX domains are important phosphoinositide-binding modules that have varying lipid-binding specificities []. The PX domain is approximately 120 residues long [], and folds into a three-stranded beta-sheet followed by three -helices and a proline-rich region that immediately preceeds a membrane-interaction loop and spans approximately eight hydrophobic and polar residues. The PX domain of p47phox binds to the SH3 domain in the same protein []. Phosphorylation of p47(phox), a cytoplasmic activator of the microbicidal phagocyte oxidase (phox), elicits interaction of p47(phox) with phoinositides. The protein phosphorylation-driven conformational change of p47(phox) enables its PX domain to bind to phosphoinositides, the interaction of which plays a crucial role in recruitment of p47(phox) from the cytoplasm to membranes and subsequent activation of the phagocyte oxidase. The lipid-binding activity of this protein is normally suppressed by intramolecular interaction of the PX domain with the C-terminal Src homology 3 (SH3) domain []. The PX domain is conserved from yeast to human. A recent multiple alignment of representative PX domain sequences can be found in [], although showing relatively little sequence conservation, their structure appears to be highly conserved. Although phosphatidylinositol-3-phosphate (PtdIns(3)P) is the primary target of PX domains, binding to phosphatidic acid, phosphatidylinositol-3,4-bisphosphate (PtdIns(3,4)P2), phosphatidylinositol-3,5-bisphosphate (PtdIns(3,5)P2), phosphatidylinositol-4,5-bisphosphate (PtdIns(4,5)P2), and phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4,5)P3) has been reported as well. The PX-domain is also a protein-protein interaction domain [].; GO: 0005515 protein binding, 0035091 phosphatidylinositol binding, 0007154 cell communication; PDB: 2DYB_A 1H6H_A 2WWE_A 1XTN_B 1XTE_A 2CZO_A 2V6V_B 2V14_A 2I4K_A 3IQ2_A ....
Probab=99.57 E-value=3.9e-15 Score=132.58 Aligned_cols=105 Identities=30% Similarity=0.493 Sum_probs=79.2
Q ss_pred cceEEEeccccccCCccccccccCccccEEEEEEEEEC--CceEEEEeecccHHHHHHHHHhhcccCCC-CCCCCCcccc
Q 002283 657 IDGVEVIGAKQKKGDVSLSERLVGVKEYTVYKIRVWSG--KDQWEVERRYRDFYTLYRRLKSLSADEGW-SLPSPWSSVE 733 (943)
Q Consensus 657 Id~VEVVgakqkkGdvS~servvGvksYTVY~IrV~sg--~~eWtV~RRYSEF~eLHqrLke~Fp~~~L-~LP~p~~sVe 733 (943)
|-.|.|+...+.. .+..++|.|+|... ...|.|.|||+||.+||++|++.++...+ +||
T Consensus 3 ~~~v~v~~~~~~~-----------~~~~~~~~~~i~~~~~~~~~~v~rry~dF~~L~~~L~~~~~~~~~p~~P------- 64 (113)
T PF00787_consen 3 IIQVSVVDPETSG-----------NKKKTYYIYQIELQDGKESWSVYRRYSDFYELHRKLKKRFPSRKLPPFP------- 64 (113)
T ss_dssp EEEEEEEEEEEES-----------SSSEEEEEEEEEETTSSSEEEEEEEHHHHHHHHHHHHHHHTTSGSTSSS-------
T ss_pred EEEEEEcCCEEEc-----------CCCEEEEEEEEEECCCCEEEEEEEEHHHHHHHHHHHhhhhcccccccCC-------
Confidence 3456666655442 23445555555554 47999999999999999999999985443 555
Q ss_pred cccccccCC---CCHHHHHHHHHHHHHHHHHHhccCCCCCChhhhhcccccc
Q 002283 734 KESRKIFGN---VSPLVVAHRSVLIQECLQSILHSSSFSSPPNALITFLSQQ 782 (943)
Q Consensus 734 K~PKKlFGn---~speFIEeRRkaLE~YLQ~LLsh~~~ls~SevL~eFLe~~ 782 (943)
+|.++++ .+++++++|+.+|+.||+.|+.++. +..++.|..||+.+
T Consensus 65 --~~~~~~~~~~~~~~~~~~R~~~L~~yL~~l~~~~~-~~~s~~l~~FL~~~ 113 (113)
T PF00787_consen 65 --PKQWFSNSRNLDPEFIEERRQALEKYLQSLLSHPE-LRSSEALKEFLESS 113 (113)
T ss_dssp --TSSSSSSSSTTSHHHHHHHHHHHHHHHHHHHTSCH-HHHSHHHHHHHCT-
T ss_pred --ccccccccccccHHHHHHHHHHHHHHHHHHHcChh-hhCchHHHHhcCCC
Confidence 4666665 8999999999999999999999754 44488999999863
No 59
>KOG2527 consensus Sorting nexin SNX11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=6.3e-15 Score=142.52 Aligned_cols=119 Identities=26% Similarity=0.377 Sum_probs=89.9
Q ss_pred CCCCCCCCCCccccceEEEeccccccCCccccccccCccccEEEEEEEEEC-----CceEEEEeecccHHHHHHHHHhhc
Q 002283 644 TDDAYPLTLVPLRIDGVEVIGAKQKKGDVSLSERLVGVKEYTVYKIRVWSG-----KDQWEVERRYRDFYTLYRRLKSLS 718 (943)
Q Consensus 644 tdDAy~l~~~~lkId~VEVVgakqkkGdvS~servvGvksYTVY~IrV~sg-----~~eWtV~RRYSEF~eLHqrLke~F 718 (943)
..++|.. +..+.+|+|.+++++ + .|.+.||.|.|.+++. ...-.|+||||||.|||++|++.-
T Consensus 7 ~~e~y~~---p~nfLeI~V~nPrt~-~--------~~~~~ytdYEI~~rTN~p~F~~k~S~VRRRYsdFewlr~~Ler~s 74 (144)
T KOG2527|consen 7 LEEAYAP---PENFLEIDVINPRTH-G--------DGKNRYTDYEIRCRTNSPSFKKKESCVRRRYSDFEWLRKRLERES 74 (144)
T ss_pred hhhhhcC---ccceEEEEeeCCccc-c--------cccccceeEEEEEecCchhhhhhhHHHHHHHHHHHHHHHHHHHhc
Confidence 3566654 445677778888773 3 3678999999999885 356789999999999999999765
Q ss_pred ccCC-CCCCCCCcccccccccccCCC-CHHHHHHHHHHHHHHHHHHhccCCCCCChhhhhcccccccc
Q 002283 719 ADEG-WSLPSPWSSVEKESRKIFGNV-SPLVVAHRSVLIQECLQSILHSSSFSSPPNALITFLSQQES 784 (943)
Q Consensus 719 p~~~-L~LP~p~~sVeK~PKKlFGn~-speFIEeRRkaLE~YLQ~LLsh~~~ls~SevL~eFLe~~~s 784 (943)
.... ++||+ |.++.++ ..+|||+||++||.||+.|+.| ++++....|..||.-...
T Consensus 75 ~kvvvP~LPg---------K~~~~~~~fre~IEeRrqgLe~fl~kVagh-pL~q~~~~Lh~Flq~~~~ 132 (144)
T KOG2527|consen 75 GKVVVPELPG---------KALFRQLPFREFIEERRQGLEVFLRKVAGH-PLLQNERCLHLFLQSELI 132 (144)
T ss_pred ccccCCCCCc---------HHHHhcCchHHHHHHHHHHHHHHHHHHhCc-hhhhccHHHHHHHHhhhh
Confidence 3222 36663 5555542 2399999999999999999997 456677899999976643
No 60
>cd07296 PX_PLD1 The phosphoinositide binding Phox Homology domain of Phospholipase D1. The PX domain is a phosphoinositide binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. PLD1 contains PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. It acts as an effector of Rheb in the signaling of the mammalian target of rapamycin (mTOR), a serine/threonine protein kinase that transduces nutrients and other stimuli to regulate many cellular processes. PLD1 also regulates the secretion of the procoagulant von Will
Probab=99.52 E-value=3.2e-14 Score=138.40 Aligned_cols=116 Identities=21% Similarity=0.340 Sum_probs=78.4
Q ss_pred ccceEEEeccccccCCccccccccCccccEEEEEEEEECCceEEEEeecccHHHHHHHHHhhcccCCCCCCCCCcc----
Q 002283 656 RIDGVEVIGAKQKKGDVSLSERLVGVKEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEGWSLPSPWSS---- 731 (943)
Q Consensus 656 kId~VEVVgakqkkGdvS~servvGvksYTVY~IrV~sg~~eWtV~RRYSEF~eLHqrLke~Fp~~~L~LP~p~~s---- 731 (943)
+|.++|..+..+. +.+-.|++|.|+|+.+...|+|.|||+||.+||++|...-....++||.....
T Consensus 7 ~i~~~eR~~~~~~----------~~~~~~t~Y~I~v~~g~~~w~V~rRy~~F~~Lh~~L~~~~~~~~~plP~k~~~~~r~ 76 (135)
T cd07296 7 RVLEVERFTSTSD----------VKKPSLNVYTIELTHGEFTWQVKRKFKHFQELHRELLRYKAFIRIPIPTRSHTVRRQ 76 (135)
T ss_pred EEEEEEEeecccc----------ccccceEEEEEEEEeCCEEEEEEeehHHHHHHHHHHHhcCCCCCCCCCcccchhhcc
Confidence 5677777664330 12447999999999999999999999999999999997323333566641110
Q ss_pred -cc-cccccc--cCC-CCHHHHH----HHHHHHHHHHHHHhccCCCCCChhhhhcccccc
Q 002283 732 -VE-KESRKI--FGN-VSPLVVA----HRSVLIQECLQSILHSSSFSSPPNALITFLSQQ 782 (943)
Q Consensus 732 -Ve-K~PKKl--FGn-~speFIE----eRRkaLE~YLQ~LLsh~~~ls~SevL~eFLe~~ 782 (943)
+. ..+..+ |.+ -+....| +||++||+||+.|+.++ ...+.+++.+||+.+
T Consensus 77 ~~~~~~~~~~p~lp~~~~~~v~e~~~~sRr~~LE~YL~~LL~~~-~~Rn~~a~~eFLeVs 135 (135)
T cd07296 77 TIKRGEPRHMPSLPRGAEEEAREEQFSSRRKQLEDYLSKLLKMP-MYRNYHATMEFIDVS 135 (135)
T ss_pred ccccccccccccCCCCCCccccccchHHHHHHHHHHHHHHhcCh-hhcCCHHHHhheecC
Confidence 00 000011 222 1122444 89999999999999965 567778899999863
No 61
>cd07290 PX_PI3K_C2_beta The phosphoinositide binding Phox Homology Domain of the Beta Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 domai
Probab=99.51 E-value=5.6e-14 Score=132.41 Aligned_cols=92 Identities=20% Similarity=0.280 Sum_probs=79.3
Q ss_pred ccccEEEEEEEEECC--ceEEEEeecccHHHHHHHHHhhcccCC-CCCCCCCcccccccccccCCCC-HHHHHHHHHHHH
Q 002283 681 VKEYTVYKIRVWSGK--DQWEVERRYRDFYTLYRRLKSLSADEG-WSLPSPWSSVEKESRKIFGNVS-PLVVAHRSVLIQ 756 (943)
Q Consensus 681 vksYTVY~IrV~sg~--~eWtV~RRYSEF~eLHqrLke~Fp~~~-L~LP~p~~sVeK~PKKlFGn~s-peFIEeRRkaLE 756 (943)
...|++|.|+|+..+ ..|.|+|||+||.+||++|++.||... +.|| +|.++|+.+ .+.+|+|+..|+
T Consensus 13 p~k~y~Y~I~V~~~~~~~~~~I~RrY~eF~~Lh~kLk~~FP~~~lP~LP---------~k~~~g~s~~~~vae~R~~~L~ 83 (109)
T cd07290 13 PSKGYAYVVKVQREGHKEATFVQRTFEEFQELHNKLRLLFPSSKLPSFP---------SRFVIGRSRGEAVAERRKEELN 83 (109)
T ss_pred CCCcEEEEEEEEECCCceeEEEEeeHHHHHHHHHHHHHHCccccCCCCC---------CCcccCccccHHHHHHHHHHHH
Confidence 346777999998864 459999999999999999999999753 3677 377787754 799999999999
Q ss_pred HHHHHHhccCCCCCChhhhhccccc
Q 002283 757 ECLQSILHSSSFSSPPNALITFLSQ 781 (943)
Q Consensus 757 ~YLQ~LLsh~~~ls~SevL~eFLe~ 781 (943)
.||+.|+..++.++.++.+..|+.+
T Consensus 84 ~Yl~~Ll~~~~~Is~s~~v~~FF~p 108 (109)
T cd07290 84 GYIWHLIHAPPEVAECDLVYTFFHP 108 (109)
T ss_pred HHHHHHHcCChheecCHHHHHhccc
Confidence 9999999999999999999999875
No 62
>cd07289 PX_PI3K_C2_alpha The phosphoinositide binding Phox Homology Domain of the Alpha Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 dom
Probab=99.50 E-value=6.6e-14 Score=131.98 Aligned_cols=90 Identities=22% Similarity=0.326 Sum_probs=77.8
Q ss_pred cccEEEEEEEEECCc---eEEEEeecccHHHHHHHHHhhcccCC-CCCCCCCcccccccccccCC-CCHHHHHHHHHHHH
Q 002283 682 KEYTVYKIRVWSGKD---QWEVERRYRDFYTLYRRLKSLSADEG-WSLPSPWSSVEKESRKIFGN-VSPLVVAHRSVLIQ 756 (943)
Q Consensus 682 ksYTVY~IrV~sg~~---eWtV~RRYSEF~eLHqrLke~Fp~~~-L~LP~p~~sVeK~PKKlFGn-~speFIEeRRkaLE 756 (943)
..|++|.|+|+..+. .| |+|||+||.+||++|++.||... +.|| .|.++|+ ...+.+|+|++.|+
T Consensus 14 ~k~yvY~i~V~~~~~~~~~~-I~Rry~eF~~Lh~kL~~~Fp~~~lP~lP---------~k~~~grs~~~~vae~R~~~L~ 83 (109)
T cd07289 14 DKHYIYVVRILREGQIEPSF-VFRTFDEFQELHNKLSILFPLWKLPGFP---------NKMVLGRTHIKDVAAKRKVELN 83 (109)
T ss_pred CCeEEEEEEEEECCCceeEE-EEeeHHHHHHHHHHHHHHCCcccCCCCC---------CCeeeCCCcchHHHHHHHHHHH
Confidence 467799999998543 55 99999999999999999999764 4677 3777886 34799999999999
Q ss_pred HHHHHHhccCCCCCChhhhhccccc
Q 002283 757 ECLQSILHSSSFSSPPNALITFLSQ 781 (943)
Q Consensus 757 ~YLQ~LLsh~~~ls~SevL~eFLe~ 781 (943)
.||+.|++.++.++.++.+..|+.+
T Consensus 84 ~Yl~~Ll~~p~~Is~~d~v~~FF~p 108 (109)
T cd07289 84 SYIQSLMNSSTEVAECDLVYTFFHP 108 (109)
T ss_pred HHHHHHHcCChhhhcChHHHHhccc
Confidence 9999999999999999999999875
No 63
>cd06890 PX_Bem1p The phosphoinositide binding Phox Homology domain of Bem1p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this subfamily bear similarity to Saccharomyces cerevisiae Bem1p, containing two Src Homology 3 (SH3) domains at the N-terminus, a central PX domain, and a C-terminal PB1 domain. Bem1p is a scaffolding protein that is critical for proper Cdc42p activation during bud formation in yeast. During budding and mating, Bem1p migrates to the plasma membrane where it can serve as an adaptor for Cdc42p and some other proteins. Bem1p also functions as an effector of the G1 cyclin Cln3p and the cyclin-dependent kinase Cdc28p in promoting vacuolar fusion. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of Bem1p
Probab=99.47 E-value=1.4e-13 Score=129.02 Aligned_cols=93 Identities=19% Similarity=0.265 Sum_probs=79.4
Q ss_pred cccEEEEEEEEE-CCceEEEEeecccHHHHHHHHHhhcccCC------CCCCCCCcccccccccccCCCCHHHHHHHHHH
Q 002283 682 KEYTVYKIRVWS-GKDQWEVERRYRDFYTLYRRLKSLSADEG------WSLPSPWSSVEKESRKIFGNVSPLVVAHRSVL 754 (943)
Q Consensus 682 ksYTVY~IrV~s-g~~eWtV~RRYSEF~eLHqrLke~Fp~~~------L~LP~p~~sVeK~PKKlFGn~speFIEeRRka 754 (943)
+.+++|.|+|+. .+..|.|.|||+||++||.+|.+.||... ..||. .|+++.+..+.+++++|+..
T Consensus 12 ~~~y~Y~i~v~~s~~~~~~v~RrY~dFy~Lh~~L~~~fp~eag~~~~~~~lP~-------lP~~~~~~~~~~~~e~R~~~ 84 (112)
T cd06890 12 DNRYWYRVRATLSDGKTRYLCRYYQDFYKLHIALLDLFPAEAGRNSSKRILPY-------LPGPVTDVVNDSISLKRLND 84 (112)
T ss_pred CCEEEEEEEEEEcCCcEEEEEEEHHHHHHHHHHHHHhCcHhhCCCCCCCcCCC-------CCCCccCcchhHHHHHHHHH
Confidence 467899999988 57899999999999999999999998542 23552 35666666789999999999
Q ss_pred HHHHHHHHhccCCCCCChhhhhccccc
Q 002283 755 IQECLQSILHSSSFSSPPNALITFLSQ 781 (943)
Q Consensus 755 LE~YLQ~LLsh~~~ls~SevL~eFLe~ 781 (943)
|+.||+.|+.+++.++.+..|+.||.+
T Consensus 85 L~~Yl~~Ll~~p~~i~~s~~v~~Ff~~ 111 (112)
T cd06890 85 LNEYLNELINLPAYIQTSEVVRDFFAN 111 (112)
T ss_pred HHHHHHHHHcCCHHhccCHHHHHHcCc
Confidence 999999999987688899999999975
No 64
>cd06891 PX_Vps17p The phosphoinositide binding Phox Homology domain of yeast sorting nexin Vps17p. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. Similar to Vps5p and SNX1, Vps17p harbors a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvatur
Probab=99.39 E-value=1.2e-12 Score=128.16 Aligned_cols=89 Identities=15% Similarity=0.276 Sum_probs=73.7
Q ss_pred ccEEEEEEEEEC-----CceE-EEEeecccHHHHHHHHHhhcccCCC-CCCCCCcccccccccc-cCCCCHHHHHHHHHH
Q 002283 683 EYTVYKIRVWSG-----KDQW-EVERRYRDFYTLYRRLKSLSADEGW-SLPSPWSSVEKESRKI-FGNVSPLVVAHRSVL 754 (943)
Q Consensus 683 sYTVY~IrV~sg-----~~eW-tV~RRYSEF~eLHqrLke~Fp~~~L-~LP~p~~sVeK~PKKl-FGn~speFIEeRRka 754 (943)
.|..|.+.++++ ..+. .|+|||+||.+||++|...++...+ +|| +|.+ ++..+.+|+++||++
T Consensus 43 ~~~~~~~~~~Tnlp~Fr~~~~~~VrRRysdF~~L~~~L~~~~~~~iVPplP---------~k~~~~~~~~~E~~~~rr~~ 113 (140)
T cd06891 43 KDPIIRFDVTTNLPTFRSSTYKDVRRTYEEFQKLFKYLNGANPETFVPALP---------LPSTSYGSNNEEDARKLKAN 113 (140)
T ss_pred CCeEEEEEEeeCCcccCCCCCCceeeeHHHHHHHHHHHHHHCCCcEeCCCC---------CccccCCCCCHHHHHHHHHH
Confidence 688888888763 2445 7999999999999999999877653 777 3554 477899999999999
Q ss_pred HHHHHHHHhccCCCCCChhhhhccccc
Q 002283 755 IQECLQSILHSSSFSSPPNALITFLSQ 781 (943)
Q Consensus 755 LE~YLQ~LLsh~~~ls~SevL~eFLe~ 781 (943)
||+||++|+.|+ .+..++.|+.||+.
T Consensus 114 LqrfL~RV~~hP-~L~~d~~l~~FLEs 139 (140)
T cd06891 114 LQRWFNRVCSDP-ILIRDEELRFFIES 139 (140)
T ss_pred HHHHHHHHhCCh-hhccCHHHHHHhcc
Confidence 999999999985 56667889999974
No 65
>KOG2528 consensus Sorting nexin SNX9/SH3PX1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=1.7e-12 Score=144.56 Aligned_cols=96 Identities=22% Similarity=0.301 Sum_probs=85.4
Q ss_pred cccccCccccEEEEEEEEECCceEEEEeecccHHHHHHHHHhhcccCCC-CCCCCCcccccccccccCCCCHHHHHHHHH
Q 002283 675 SERLVGVKEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEGW-SLPSPWSSVEKESRKIFGNVSPLVVAHRSV 753 (943)
Q Consensus 675 servvGvksYTVY~IrV~sg~~eWtV~RRYSEF~eLHqrLke~Fp~~~L-~LP~p~~sVeK~PKKlFGn~speFIEeRRk 753 (943)
.+++.|+|+|+.|.++-+.... .|.|||++|.|||.+|..+|+.+.+ +||. |.+-|++..+||++||+
T Consensus 196 ~sk~kg~ks~i~y~ltpt~t~~--~v~rrykhfdwl~~rl~~kf~~i~vp~Lpd---------kq~~gr~Ee~fi~~rr~ 264 (490)
T KOG2528|consen 196 ESKFKGLKSYIAYQLTPTHTNI--SVSRRYKHFDWLYERLLLKFPLIPVPPLPD---------KQVTGRFEEDFIEKRRK 264 (490)
T ss_pred ccccccchheeEeeecccccCc--chhhcccccHHHHHHHHhhcccccCCCCCc---------cccccchhHHHHHHHHH
Confidence 4678899999999997765533 3999999999999999999987664 7884 88999999999999999
Q ss_pred HHHHHHHHHhccCCCCCChhhhhcccccc
Q 002283 754 LIQECLQSILHSSSFSSPPNALITFLSQQ 782 (943)
Q Consensus 754 aLE~YLQ~LLsh~~~ls~SevL~eFLe~~ 782 (943)
+|+.|++.+++| ++++.+++++.||.+.
T Consensus 265 ~l~~wm~~~~~h-pvlsq~evf~hFl~c~ 292 (490)
T KOG2528|consen 265 GLQWWMNHMCRH-PVLSQCEVFQHFLTCP 292 (490)
T ss_pred HHHHHHHHhhcc-hHhhhhHHHHHHHcCC
Confidence 999999999997 6899999999999996
No 66
>cd06892 PX_SNX5_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 5 and 6. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. Members of this subfamily include SNX5, SNX6, and similar proteins. They contain a Bin/Amphiphysin/Rvs (BAR) domain, which detects membrane curvature, C-terminal to the PX domain, similar to other sorting nexins including SNX1-2. The PX-BAR structural unit helps determine the specific membrane-targeting of som
Probab=99.23 E-value=2.1e-11 Score=119.67 Aligned_cols=98 Identities=13% Similarity=0.145 Sum_probs=72.2
Q ss_pred cccEEEEEEEEEC-----CceEEEEeecccHHHHHHHHHhh--cccCCC-CCCCCCccccccccc--cc----CCCCHHH
Q 002283 682 KEYTVYKIRVWSG-----KDQWEVERRYRDFYTLYRRLKSL--SADEGW-SLPSPWSSVEKESRK--IF----GNVSPLV 747 (943)
Q Consensus 682 ksYTVY~IrV~sg-----~~eWtV~RRYSEF~eLHqrLke~--Fp~~~L-~LP~p~~sVeK~PKK--lF----Gn~speF 747 (943)
..++.|+|+.++. ..+..|.|||+||.|||.+|.+. |+...+ ++|..+ .+...+.| .. +++..+|
T Consensus 14 ~~~V~Y~V~TkT~l~~f~~~e~sV~RR~sDF~wL~~~L~~~~~~~g~IVPP~P~K~-~~~~~~~k~~klg~~d~~~~~ef 92 (141)
T cd06892 14 RDKVKFTVHTKTTLPTFQKPEFSVTRQHEEFVWLHDTLVENEDYAGLIIPPAPPKP-DFDASREKLQKLGEGEGSMTKEE 92 (141)
T ss_pred CCeEEEEEEeccCCccccCCeeEEEeccHHHHHHHHHHhhccCCCeEEECCCCCCc-ccccccceeeecccCccccchHH
Confidence 4689999988763 47899999999999999999976 444332 555311 01000111 11 3488999
Q ss_pred HHHHHHHH---------------HHHHHHHhccCCCCCChhhhhccccc
Q 002283 748 VAHRSVLI---------------QECLQSILHSSSFSSPPNALITFLSQ 781 (943)
Q Consensus 748 IEeRRkaL---------------E~YLQ~LLsh~~~ls~SevL~eFLe~ 781 (943)
+++|+..| |.||++|+.| |.+..+..|..||+.
T Consensus 93 ~~~r~~~Le~~y~~~~~k~v~~~e~FL~RiA~H-P~L~~~~~l~~FLe~ 140 (141)
T cd06892 93 FEKMKQELEAEYLAIFKKTVAMHEVFLRRLASH-PVLRNDANFRVFLEY 140 (141)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccC-CeeecCHhHHhhhcC
Confidence 99999999 5899999998 577888999999975
No 67
>cd07291 PX_SNX5 The phosphoinositide binding Phox Homology domain of Sorting Nexin 5. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting
Probab=99.19 E-value=3.6e-11 Score=117.81 Aligned_cols=93 Identities=16% Similarity=0.199 Sum_probs=66.9
Q ss_pred cccEEEEEEEEEC-----CceEEEEeecccHHHHHHHHHhhcccCCCCCCCCCccccccccccc--------------CC
Q 002283 682 KEYTVYKIRVWSG-----KDQWEVERRYRDFYTLYRRLKSLSADEGWSLPSPWSSVEKESRKIF--------------GN 742 (943)
Q Consensus 682 ksYTVY~IrV~sg-----~~eWtV~RRYSEF~eLHqrLke~Fp~~~L~LP~p~~sVeK~PKKlF--------------Gn 742 (943)
..++.|+|+.++. .....|.|||+||.|||++|.+.+...++.+|++| +|.+| ++
T Consensus 14 ~d~V~Y~V~TkTtl~~F~~~ef~V~RRysDFlwL~~~L~e~~~~~G~IIPPlP------eK~~~~~~~~k~~kl~~~~~~ 87 (141)
T cd07291 14 RDKVKFTVHTKTTLPSFQSPDFSVTRQHEDFIWLHDALIETEDYAGLIIPPAP------PKPDFDGPREKMQKLGEGEGS 87 (141)
T ss_pred CCCEEEEEEeCCCCccccCCccEEEeccHHHHHHHHHHhccccCCeEEECCCC------CCccccchHHhhhhcccCccc
Confidence 3579999988763 46799999999999999999975433333334333 23333 22
Q ss_pred -CCHHHHHHH--------------HHHHHHHHHHHhccCCCCCChhhhhccccc
Q 002283 743 -VSPLVVAHR--------------SVLIQECLQSILHSSSFSSPPNALITFLSQ 781 (943)
Q Consensus 743 -~speFIEeR--------------RkaLE~YLQ~LLsh~~~ls~SevL~eFLe~ 781 (943)
...+|++.| +++||.|||+|+.| |.+..+..|+.||+.
T Consensus 88 ~~~eef~~~r~~~~~~~~~~~kk~~a~lE~fL~Ria~H-P~l~~d~~f~~FLe~ 140 (141)
T cd07291 88 MTKEEFAKMKQELEAEYLAVFKKTVQVHEVFLQRLSSH-PSLSKDRNFHIFLEY 140 (141)
T ss_pred ccHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHhhC-CeeccCcchhhhccC
Confidence 235677755 45699999999998 567777899999985
No 68
>cd06889 PX_NoxO1 The phosphoinositide binding Phox Homology domain of Nox Organizing protein 1. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Nox Organizing protein 1 (NoxO1) is a critical regulator of enzyme kinetics of the nonphagocytic NADPH oxidase Nox1, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Nox1 is expressed in colon, stomach, uterus, prostate, and vascular smooth muscle cells. NoxO1, a homolog of the p47phox subunit of phagocytic NADPH oxidase, is involved in targeting activator subunits (such as NoxA1) to Nox1. It is co-localized with Nox1 in the membranes of resting cells and directs the subcellular localization of Nox1. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain
Probab=99.16 E-value=1.7e-10 Score=110.94 Aligned_cols=91 Identities=20% Similarity=0.209 Sum_probs=75.8
Q ss_pred cccEEEEEEEEE-CCceEEEEeecccHHHHHHHHHhhcccCC----------CCCCCCCcccccccccccCCC--CHHHH
Q 002283 682 KEYTVYKIRVWS-GKDQWEVERRYRDFYTLYRRLKSLSADEG----------WSLPSPWSSVEKESRKIFGNV--SPLVV 748 (943)
Q Consensus 682 ksYTVY~IrV~s-g~~eWtV~RRYSEF~eLHqrLke~Fp~~~----------L~LP~p~~sVeK~PKKlFGn~--speFI 748 (943)
..+.+|.|.|+. ++..|.|+|||.||.+||.+|++.||.-. +.||+ +.++|+. ..+.-
T Consensus 17 ~~h~~Y~i~V~wsdgs~~~iyR~y~eF~~lh~~L~~~FP~EaG~~~~~~riLP~lP~---------~~~~~~~~~~~~~a 87 (121)
T cd06889 17 RRHKTYMFSVLWSDGSELFVYRSLEEFRKLHKQLKEKFPVEAGLLRSSDRVLPKFKD---------APSLGSLKGSTSRS 87 (121)
T ss_pred cceeEEEEEEEEcCCcEEEEEEEHHHHHHHHHHHHHHCCcccCCCCCCCcccCCCCC---------CcccCCcccccchH
Confidence 467789999976 56899999999999999999999998531 24443 5567764 34467
Q ss_pred HHHHHHHHHHHHHHhccCCCCCChhhhhccccc
Q 002283 749 AHRSVLIQECLQSILHSSSFSSPPNALITFLSQ 781 (943)
Q Consensus 749 EeRRkaLE~YLQ~LLsh~~~ls~SevL~eFLe~ 781 (943)
++|+..|+.|++.|++.++.++.++.+..|+.+
T Consensus 88 ~~R~~~L~~Y~~~Ll~lp~~Is~~~~V~~FF~p 120 (121)
T cd06889 88 LARLKLLETYCQELLRLDEKVSRSPEVIQFFAP 120 (121)
T ss_pred HHHHHHHHHHHHHHHcCCcceecCHHHHHhcCC
Confidence 899999999999999999999999999999876
No 69
>cd07297 PX_PLD2 The phosphoinositide binding Phox Homology domain of Phospholipase D2. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Phospholipase D (PLD) catalyzes the hydrolysis of the phosphodiester bond of phosphatidylcholine to generate membrane-bound phosphatidic acid and choline. PLD activity has been detected in viruses, bacteria, yeast, plants, and mammals, but the PX domain is not present in PLDs from viruses and bacteria. PLDs are implicated in many cellular functions like signaling, cytoskeletal reorganization, vesicular transport, stress responses, and the control of differentiation, proliferation, and survival. PLD2 contains PX and Pleckstrin Homology (PH) domains in addition to the catalytic domain. It mediates EGF-dependent insulin secretion and EGF-induced Ras activation by the guanine nucleotide-exchange factor
Probab=99.15 E-value=1.2e-10 Score=112.56 Aligned_cols=95 Identities=20% Similarity=0.325 Sum_probs=65.9
Q ss_pred EEEEEEEEECCceEEEEeecccHHHHHHHHHhhcccCCC-CCCCCCc---cc-c-------cccccccCCCCHHHHHHHH
Q 002283 685 TVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEGW-SLPSPWS---SV-E-------KESRKIFGNVSPLVVAHRS 752 (943)
Q Consensus 685 TVY~IrV~sg~~eWtV~RRYSEF~eLHqrLke~Fp~~~L-~LP~p~~---sV-e-------K~PKKlFGn~speFIEeRR 752 (943)
++|+|+++.+...|+|.|||++|.+||++|...-....+ ++|..-. .. . ..|+.- +.. .+-+..|+
T Consensus 24 ~lYtIeltHG~F~W~IkRryKhF~~LHr~L~~~k~~~~~~P~~~~~~~r~~~~~~~~~~mP~LP~~~-~~~-~~~~~sr~ 101 (130)
T cd07297 24 TLYTVRLTHGEFTWTVKKKFKHFQELHRDLYRHKVMLSFLPLGRFAIQHRQQLEGLTEEMPSLPGTD-REA-SRRTASKP 101 (130)
T ss_pred eeEEEEEecCceEEEEEehhhhHHHHHHHHHHHHHhhhcCCchhhhhhhccccccccCcCCCCCCCC-chh-hhhhhhHH
Confidence 799999999999999999999999999999974433222 3331000 00 1 111110 111 35578899
Q ss_pred HHHHHHHHHHhccCCCCCChhhhhcccccc
Q 002283 753 VLIQECLQSILHSSSFSSPPNALITFLSQQ 782 (943)
Q Consensus 753 kaLE~YLQ~LLsh~~~ls~SevL~eFLe~~ 782 (943)
++||+||+.||.++...+ -++..+||+.+
T Consensus 102 kqLE~YLn~LL~~~~YRn-~~atleFLeVS 130 (130)
T cd07297 102 KYLENYLNNLLENSFYRN-YHAMMEFLAVS 130 (130)
T ss_pred HHHHHHHHHHhcchhhcC-ChhheeeeecC
Confidence 999999999999865555 46777999863
No 70
>cd07292 PX_SNX6 The phosphoinositide binding Phox Homology domain of Sorting Nexin 6. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transfo
Probab=99.15 E-value=1e-10 Score=114.55 Aligned_cols=96 Identities=14% Similarity=0.114 Sum_probs=66.2
Q ss_pred ccEEEEEEEEEC-----CceEEEEeecccHHHHHHHHHhh--cccCC-CCCCCCCcccccccccc---c----CCCCHHH
Q 002283 683 EYTVYKIRVWSG-----KDQWEVERRYRDFYTLYRRLKSL--SADEG-WSLPSPWSSVEKESRKI---F----GNVSPLV 747 (943)
Q Consensus 683 sYTVY~IrV~sg-----~~eWtV~RRYSEF~eLHqrLke~--Fp~~~-L~LP~p~~sVeK~PKKl---F----Gn~speF 747 (943)
..+.|+|+.++. ..+..|.|||+||.|||++|.+. ++... +++|+.+. -..+|.. + +++..++
T Consensus 15 d~V~Y~V~TkTtlp~F~~~e~sV~RRysDF~wL~~~L~e~~~~~G~IVPPlP~K~~--~~~~~~k~~klg~~~~~~~~ee 92 (141)
T cd07292 15 DKVKFTVHTKSSLPNFKQNEFSVVRQHEEFIWLHDSFVENEDYAGYIIPPAPPRPD--FDASREKLQKLGEGEGSMTKEE 92 (141)
T ss_pred CceEEEEEecccCcccCCCceEEEeccHhHHHHHHHHhhcccCCcEEECCCCCCcc--ccchHHHHHhhccccccchHHH
Confidence 348999998773 46799999999999999999966 44433 25553221 1111111 1 2233333
Q ss_pred HH---------------HHHHHHHHHHHHHhccCCCCCChhhhhccccc
Q 002283 748 VA---------------HRSVLIQECLQSILHSSSFSSPPNALITFLSQ 781 (943)
Q Consensus 748 IE---------------eRRkaLE~YLQ~LLsh~~~ls~SevL~eFLe~ 781 (943)
.. +|+++||.|||+|+.| |.+.....|+.||+.
T Consensus 93 ~~~~~~~l~~~~~~~~kk~~a~~E~Fl~Ria~H-P~l~~D~~f~~FLe~ 140 (141)
T cd07292 93 FTKMKQELEAEYLAIFKKTVAMHEVFLCRVAAH-PILRKDLNFHVFLEY 140 (141)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC-CccccCcchhheecc
Confidence 33 7789999999999998 567777899999985
No 71
>KOG2273 consensus Membrane coat complex Retromer, subunit VPS5/SNX1, Sorting nexins, and related PX domain-containing proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.13 E-value=2.3e-10 Score=129.83 Aligned_cols=95 Identities=25% Similarity=0.375 Sum_probs=80.7
Q ss_pred cCccccEEEEEEEEEC-----CceEEEEeecccHHHHHHHHHhhcccCCC-CCCCCCcccccccccccC-----CCCHHH
Q 002283 679 VGVKEYTVYKIRVWSG-----KDQWEVERRYRDFYTLYRRLKSLSADEGW-SLPSPWSSVEKESRKIFG-----NVSPLV 747 (943)
Q Consensus 679 vGvksYTVY~IrV~sg-----~~eWtV~RRYSEF~eLHqrLke~Fp~~~L-~LP~p~~sVeK~PKKlFG-----n~speF 747 (943)
.+++.|+.|.|..++. .....|+|||+||.+||..|...||...+ +|| +|.+++ .++.+|
T Consensus 123 ~~~~~~~~y~i~t~t~~~~~~~~~~~V~RrysDF~~L~~~L~~~~p~~~iPplP---------~k~~~~~~~~~~~s~ef 193 (503)
T KOG2273|consen 123 DGMKTYVSYIIETKTSLPIFGSSEFSVRRRYSDFLWLRSKLLSKYPGRIIPPLP---------EKSIVGSKSGDSFSDEF 193 (503)
T ss_pred CCccceEEEEEEEeeccCcCCCCceeEEeehhHHHHHHHHHHHHCCCCeeCCCC---------chhhhhccccCCCCHHH
Confidence 4678999999998873 46789999999999999999999997653 666 355443 489999
Q ss_pred HHHHHHHHHHHHHHHhccCCCCCChhhhhccccccc
Q 002283 748 VAHRSVLIQECLQSILHSSSFSSPPNALITFLSQQE 783 (943)
Q Consensus 748 IEeRRkaLE~YLQ~LLsh~~~ls~SevL~eFLe~~~ 783 (943)
+++||++|+.||++++.| |.+..+.+|+.||+...
T Consensus 194 ~e~rr~~L~~~l~r~~~h-P~l~~~~~~~~FL~~~~ 228 (503)
T KOG2273|consen 194 IEKRRKALERFLNRLSLH-PVLSNDEDFRLFLESDS 228 (503)
T ss_pred HHHHHHHHHHHHHHHhcC-cccccCHHHHHHhcccc
Confidence 999999999999999997 56777889999999984
No 72
>cd06896 PX_PI3K_C2_gamma The phosphoinositide binding Phox Homology Domain of the Gamma Isoform of Class II Phosphoinositide 3-Kinases. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. The Phosphoinositide 3-Kinase (PI3K) family of enzymes catalyzes the phosphorylation of the 3-hydroxyl group of the inositol ring of phosphatidylinositol. PI3Ks play an important role in a variety of fundamental cellular processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, immune cell activation and apoptosis. PI3Ks are divided into three main classes (I, II, and III) based on their substrate specificity, regulation, and domain structure. Class II PI3Ks preferentially use PI as a substrate to produce PI3P, but can also phosphorylate PI4P to produce PI(3,4)P2. They function as monomers and do not associate with any regulatory subunits. Class II enzymes contain an N-terminal Ras binding domain, a lipid binding C2 dom
Probab=98.85 E-value=7.5e-09 Score=96.75 Aligned_cols=85 Identities=14% Similarity=0.176 Sum_probs=69.3
Q ss_pred EEEEEEEEE-CCceEEEEeecccHHHHHHHHHhhcccCCC-CCCCCCcccccccccccCCCCHHHHHHHHHHHHHHHHHH
Q 002283 685 TVYKIRVWS-GKDQWEVERRYRDFYTLYRRLKSLSADEGW-SLPSPWSSVEKESRKIFGNVSPLVVAHRSVLIQECLQSI 762 (943)
Q Consensus 685 TVY~IrV~s-g~~eWtV~RRYSEF~eLHqrLke~Fp~~~L-~LP~p~~sVeK~PKKlFGn~speFIEeRRkaLE~YLQ~L 762 (943)
..|.|+|.. ++..-.|+|+|.||.+||++|++.||...+ .||. +-+++..+. -++|.+.|+.||+.|
T Consensus 13 ~lY~i~V~~sd~~~t~v~Rs~eeF~eLH~~L~~~FP~~~LP~fP~---------~~~~~~~~~--~~~R~~~L~~Yl~~L 81 (101)
T cd06896 13 NLYLVQVTQSCNLVSLTEKSFEQFSELHSQLQKQFPSLALPEFPH---------WWHLPFTDS--DHKRVRDLNHYLEQL 81 (101)
T ss_pred eEEEEEEEEeCCCcceeeecHHHHHHHHHHHHHHCccccccCCCC---------ccccCcccH--HHHHHHHHHHHHHHH
Confidence 459999976 557889999999999999999999998764 6664 323343333 478999999999999
Q ss_pred hccCCCCCChhhhhcccc
Q 002283 763 LHSSSFSSPPNALITFLS 780 (943)
Q Consensus 763 Lsh~~~ls~SevL~eFLe 780 (943)
++.++.++.++.+..|+.
T Consensus 82 l~~~~eVa~sd~v~sFF~ 99 (101)
T cd06896 82 LSGSREVANSDCVLSFFL 99 (101)
T ss_pred HccCHHHhcchHHHHHhh
Confidence 999999999999988874
No 73
>COG5391 Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only]
Probab=98.42 E-value=4.3e-07 Score=105.17 Aligned_cols=78 Identities=26% Similarity=0.261 Sum_probs=64.9
Q ss_pred ccccEEEEEEEEEC-----Cce---EEEEeecccHHHHHHHHHhhcccCCC-CCCCCCccccccccccc-----CCCCHH
Q 002283 681 VKEYTVYKIRVWSG-----KDQ---WEVERRYRDFYTLYRRLKSLSADEGW-SLPSPWSSVEKESRKIF-----GNVSPL 746 (943)
Q Consensus 681 vksYTVY~IrV~sg-----~~e---WtV~RRYSEF~eLHqrLke~Fp~~~L-~LP~p~~sVeK~PKKlF-----Gn~spe 746 (943)
...|+.|.|..... ... -+|.|||+||.+||..|...+|...+ +|| +|++. ++++++
T Consensus 148 ~~~~~~y~i~~~~n~~~f~~~~~~~~~V~RRySdf~~Lh~~L~~~~p~~~iPplP---------~K~~~s~~~~~~~~~~ 218 (524)
T COG5391 148 RDKHTSYEIITVTNLPSFQLRESRPLVVRRRYSDFESLHSILIKLLPLCAIPPLP---------SKKSNSEYYGDRFSDE 218 (524)
T ss_pred CCCcceeeEEEeecCccccccccccceeeeccccHHHHHHHhhhhCCCCCCCCCC---------chhhhccccccccchH
Confidence 45789999977653 233 39999999999999999999987764 777 47766 369999
Q ss_pred HHHHHHHHHHHHHHHHhccCC
Q 002283 747 VVAHRSVLIQECLQSILHSSS 767 (943)
Q Consensus 747 FIEeRRkaLE~YLQ~LLsh~~ 767 (943)
|+++|+.+|+.||+.++.|+.
T Consensus 219 ~i~~r~~~L~~~~~~~~~hp~ 239 (524)
T COG5391 219 FIEERRQSLQNFLRRVSTHPL 239 (524)
T ss_pred HHHHHHHHHHHHHHHHhcCcc
Confidence 999999999999999999854
No 74
>KOG2101 consensus Intermediate filament-like protein, sorting nexins, and related proteins containing PX (PhoX) domain(s) [Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport; Cell cycle control, cell division, chromosome partitioning]
Probab=98.16 E-value=3.4e-06 Score=92.59 Aligned_cols=84 Identities=33% Similarity=0.405 Sum_probs=66.1
Q ss_pred CccccEEEEEEEEECCce-----EEEEeecccHHHHHHHHHhhc-ccCCCCCCCCCcccccccccccCCCCHHHHHHHHH
Q 002283 680 GVKEYTVYKIRVWSGKDQ-----WEVERRYRDFYTLYRRLKSLS-ADEGWSLPSPWSSVEKESRKIFGNVSPLVVAHRSV 753 (943)
Q Consensus 680 GvksYTVY~IrV~sg~~e-----WtV~RRYSEF~eLHqrLke~F-p~~~L~LP~p~~sVeK~PKKlFGn~speFIEeRRk 753 (943)
..++|++|.|.|...... |+|+|||++|..||.+|++.| |...++.|..+. +...+++++++...++.+|++
T Consensus 131 ~~~~~~vy~~~v~~~~~~~~~~~~~V~rRysdf~~l~~~Lk~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~r~~ 208 (362)
T KOG2101|consen 131 KSKSFTVYKVTVSVSSRREDLSTAVVSRRYSDFSRLHRRLKRQFNPALRFPGPKFRN--EIQKKKLLGNFDADVIPERSE 208 (362)
T ss_pred cccceeEEEEEEEecCCCccCcCceeeechhHHHHHHHHHHHhcCccccCCCccchh--HHHHHHhhccchhhhhhhhhh
Confidence 457899999999876655 999999999999999999999 665555553110 122345678899999999999
Q ss_pred HHHHHH--HHHhcc
Q 002283 754 LIQECL--QSILHS 765 (943)
Q Consensus 754 aLE~YL--Q~LLsh 765 (943)
.++.|| +....+
T Consensus 209 ~~~~fl~~~f~~~~ 222 (362)
T KOG2101|consen 209 ALEEFLSLQFKDSK 222 (362)
T ss_pred hHHHHHHhhhhhcc
Confidence 999999 666543
No 75
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.11 E-value=1.1e-05 Score=98.84 Aligned_cols=113 Identities=19% Similarity=0.227 Sum_probs=92.4
Q ss_pred CCCccccceEEEeccccccCCccccccccCccccEEEEEEEEECC--ceEEEEeecccHHHHHHHHHhhcccCCC-CCCC
Q 002283 651 TLVPLRIDGVEVIGAKQKKGDVSLSERLVGVKEYTVYKIRVWSGK--DQWEVERRYRDFYTLYRRLKSLSADEGW-SLPS 727 (943)
Q Consensus 651 ~~~~lkId~VEVVgakqkkGdvS~servvGvksYTVY~IrV~sg~--~eWtV~RRYSEF~eLHqrLke~Fp~~~L-~LP~ 727 (943)
.....+|.+|.|++-.++ ...+++..|+|+|.+.+ ..-.|+|-|.||.+||++|+..||...+ .||.
T Consensus 1369 ~~sdgRi~~v~v~~f~K~----------~~pnK~YmYvveV~r~n~~e~s~i~RsF~EF~ElH~KL~~~Fp~~~Lp~fP~ 1438 (1639)
T KOG0905|consen 1369 LNSDGRISEVTVLKFEKH----------YSPNKIYMYVVEVTRENQAEPSFIFRSFEEFQELHNKLRARFPSMKLPSFPH 1438 (1639)
T ss_pred eccCCceEEEEEEEeeee----------ccCCceEEEEEEEEecCCCCchHHHHhHHHHHHHHHHHHHhCccccCCCCCc
Confidence 456678999999886543 24677889999998854 5678999999999999999999998764 5552
Q ss_pred CCcccccccccccCC-CCHHHHHHHHHHHHHHHHHHhccCCCCCChhhhhcccccc
Q 002283 728 PWSSVEKESRKIFGN-VSPLVVAHRSVLIQECLQSILHSSSFSSPPNALITFLSQQ 782 (943)
Q Consensus 728 p~~sVeK~PKKlFGn-~speFIEeRRkaLE~YLQ~LLsh~~~ls~SevL~eFLe~~ 782 (943)
+-++|+ .-.++.++|+..|+.||..|+.....+.+++.+..|+.+-
T Consensus 1439 ---------~~~~grsnikaVA~kR~~~ln~yl~~L~nas~EVa~cDlVyTFFhpl 1485 (1639)
T KOG0905|consen 1439 ---------RIHLGRSNIKAVAEKRIIELNKYLISLFNASDEVAHCDLVYTFFHPL 1485 (1639)
T ss_pred ---------eeeecccchhHHHHHHHHHHHHHHHHHhcCCchhhccceeeeeechh
Confidence 445666 4467889999999999999999999999999999998765
No 76
>KOG3784 consensus Sorting nexin protein SNX27 [General function prediction only; Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.84 E-value=4.1e-05 Score=85.91 Aligned_cols=89 Identities=21% Similarity=0.349 Sum_probs=72.9
Q ss_pred CccccEEEEEEEEECCceEEEEeecccHHHHHHHHHhhcccCC-CCCCCCCcccccccccccCCCCHHHHHHHHHHHHHH
Q 002283 680 GVKEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEG-WSLPSPWSSVEKESRKIFGNVSPLVVAHRSVLIQEC 758 (943)
Q Consensus 680 GvksYTVY~IrV~sg~~eWtV~RRYSEF~eLHqrLke~Fp~~~-L~LP~p~~sVeK~PKKlFGn~speFIEeRRkaLE~Y 758 (943)
|...||+|.|.+.. .....+||+++..||..|++.|.... +.+| ||+.|. +.+.-+++||.+||+|
T Consensus 13 ~~~~ytaynih~nG---~~~~~~r~s~~~~l~~~lr~~~~~~~~p~~p---------~k~~f~-L~~~~~~~rr~~leqy 79 (407)
T KOG3784|consen 13 SLERYTAYNIHING---RQHGSVRYSQLVELHEQLKKHFYDYCLPQFP---------PKKLFK-LTPQQLDSRRRGLEQY 79 (407)
T ss_pred Ccccccceeeeecc---eeEEEEehHHHHhHHHHHHHHhhcccCCCCC---------cccccC-CChhhhHHHHHHHHHH
Confidence 56789999998742 45677899999999999999886632 3555 577764 7999999999999999
Q ss_pred HHHHhccCCCCCChhhhhcccccc
Q 002283 759 LQSILHSSSFSSPPNALITFLSQQ 782 (943)
Q Consensus 759 LQ~LLsh~~~ls~SevL~eFLe~~ 782 (943)
||.+.++ +.+..+..+..||.-.
T Consensus 80 lqa~~q~-~~l~~s~~~~~fL~~~ 102 (407)
T KOG3784|consen 80 LQAVCQD-PVLARSELVQKFLMRA 102 (407)
T ss_pred HHHHhcC-ccccchhhhhHHHHhc
Confidence 9999995 6788888888888554
No 77
>cd07298 PX_RICS The phosphoinositide binding Phox Homology domain of PX-RICS. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. RICS is a Rho GTPase-activating protein for cdc42 and Rac1. It is implicated in the regulation of postsynaptic signaling and neurite outgrowth. An N-terminal splicing variant of RICS containing additional PX and Src Homology 3 (SH3) domains, also called PX-RICS, is the main isoform expressed during neural development. PX-RICS is involved in neural functions including axon and dendrite extension, postnatal remodeling, and fine-tuning of neural circuits during early brain development. The PX domain is involved in targeting of proteins to PI-enriched membranes, and may also be involved in protein-protein interaction. The PX domain of PX-RICS specifically binds phosphatidylinositol 3-phosphate (PI3P), PI4P, and
Probab=97.30 E-value=0.0008 Score=64.82 Aligned_cols=85 Identities=21% Similarity=0.257 Sum_probs=58.6
Q ss_pred ccEEEEEEEEECCceEEEEeecccHHHHHHHHHhhcccCC----CCCCCCCcccccccccccCCCCHHHHHHHHHHHHHH
Q 002283 683 EYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEG----WSLPSPWSSVEKESRKIFGNVSPLVVAHRSVLIQEC 758 (943)
Q Consensus 683 sYTVY~IrV~sg~~eWtV~RRYSEF~eLHqrLke~Fp~~~----L~LP~p~~sVeK~PKKlFGn~speFIEeRRkaLE~Y 758 (943)
.=++|.|+|..++..|.|.|+|-+|..|.+.|.+-.-.+. ..||+ .-+....++.++ ..|..|
T Consensus 26 ~e~~~~v~v~Cqgrsw~VkRSyEdfr~LD~~LHrCvyDRrfS~L~eLp~----------~~~l~~~~~~v~---~~l~~Y 92 (115)
T cd07298 26 KELVYLVQIACQGRSWIVKRSYEDFRVLDKHLHLCIYDRRFSQLPELPR----------SDSLKDSPESVT---QMLMAY 92 (115)
T ss_pred CCeEEEEEEEeCCCceEEEeeHHHHHHHHHHHHHHHHhhhhhccccCCC----------cccccccHHHHH---HHHHHH
Confidence 3589999999988999999999999999999987522222 25662 223334566664 589999
Q ss_pred HHHHhccCCCCCChhhhhcccc
Q 002283 759 LQSILHSSSFSSPPNALITFLS 780 (943)
Q Consensus 759 LQ~LLsh~~~ls~SevL~eFLe 780 (943)
|.++.......-++-.+..||+
T Consensus 93 L~RlS~Ia~~~~nCGPvLtWle 114 (115)
T cd07298 93 LSRLSAIAGNKINCGPALTWME 114 (115)
T ss_pred HHHHHHHhhCCccchhcceeee
Confidence 9998774332233344555654
No 78
>cd07278 PX_RICS_like The phosphoinositide binding Phox Homology domain of PX-RICS-like proteins. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. Members of this family include PX-RICS, TCGAP (Tc10/Cdc42 GTPase-activating protein), and similar proteins. They contain N-terminal PX and Src Homology 3 (SH3) domains, a central Rho GAP domain, and C-terminal extensions. They act as Rho GTPase-activating proteins. PX-RICS is the main isoform expressed during neural development. It is involved in neural functions including axon and dendrite extension, postnatal remodeling, and fine-tuning of neural circuits during early brain development. The PX domain of PX-RICS specifically binds phosphatidylinositol 3-phosphate (PI3P), PI4P, and PI5P. TCGAP is widely expressed in the brain where it is involved in regulating the outgrowth of axons and d
Probab=97.03 E-value=0.0022 Score=61.65 Aligned_cols=85 Identities=19% Similarity=0.320 Sum_probs=57.3
Q ss_pred ccEEEEEEEEECCceEEEEeecccHHHHHHHHHhhcccCCC----CCCCCCcccccccccccCCCCHHHHHHHHHHHHHH
Q 002283 683 EYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEGW----SLPSPWSSVEKESRKIFGNVSPLVVAHRSVLIQEC 758 (943)
Q Consensus 683 sYTVY~IrV~sg~~eWtV~RRYSEF~eLHqrLke~Fp~~~L----~LP~p~~sVeK~PKKlFGn~speFIEeRRkaLE~Y 758 (943)
.-++|.|+|..++..|.|.|.|-+|..|.+.|.+-.-.+.+ .||+ .-.....++-+ ...|..|
T Consensus 25 k~~~~~v~V~cqg~sW~VkRSyEdfr~LD~~LHrCiyDRr~S~L~eL~~----------~~~~~~~~~~~---~~~l~~Y 91 (114)
T cd07278 25 KELVYLVQVQCQGKSWLVKRSYDDFRMLDKHLHQCIYDRKFSQLTELPE----------ECIEKREQQNL---HQVLSDY 91 (114)
T ss_pred CceEEEEEEEeCCcceEEEeeHHHHHHHHHHHHHHHHhhhhhccccCCc----------cccccchHHHH---HHHHHHH
Confidence 56999999999999999999999999999999875433332 5552 11111123333 4589999
Q ss_pred HHHHhccCCCCCChhhhhcccc
Q 002283 759 LQSILHSSSFSSPPNALITFLS 780 (943)
Q Consensus 759 LQ~LLsh~~~ls~SevL~eFLe 780 (943)
|.++.......-++-.+..||+
T Consensus 92 L~RlS~Ia~~~inCGPvLtWle 113 (114)
T cd07278 92 LKRLSSIAGNLLNCGPVLNWLE 113 (114)
T ss_pred HHHHHHHhcCcccchhcceeee
Confidence 9998774333333445556665
No 79
>cd07299 PX_TCGAP The phosphoinositide binding Phox Homology domain of Tc10/Cdc42 GTPase-activating protein. The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions such as cell signaling, vesicular trafficking, protein sorting, and lipid modification, among others. TCGAP (Tc10/Cdc42 GTPase-activating protein) contains N-terminal PX and Src Homology 3 (SH3) domains, a central Rho GAP domain, and C-terminal proline-rich regions. It is widely expressed in the brain where it is involved in regulating the outgrowth of axons and dendrites and is regulated by the protein tyrosine kinase Fyn. It interacts with cdc42 and TC10beta through its GAP domain and with phosphatidylinositol-(4,5)-bisphosphate [PI(4,5)P2] through its PX domain. It is translocated to the plasma membrane in adipocytes in response to insulin and may be involved in the regulation of insulin-stimulated glucose transport. TCGAP has also been named sorting nexins 26 (SNX26). SNXs
Probab=96.98 E-value=0.0023 Score=61.48 Aligned_cols=86 Identities=21% Similarity=0.258 Sum_probs=56.4
Q ss_pred cccEEEEEEEEECCceEEEEeecccHHHHHHHHHhhcccCCC----CCCCCCcccccccccccCCCCHHHHHHHHHHHHH
Q 002283 682 KEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEGW----SLPSPWSSVEKESRKIFGNVSPLVVAHRSVLIQE 757 (943)
Q Consensus 682 ksYTVY~IrV~sg~~eWtV~RRYSEF~eLHqrLke~Fp~~~L----~LP~p~~sVeK~PKKlFGn~speFIEeRRkaLE~ 757 (943)
..-++|.|+|..++..|.|.|.|-+|..|.+.|.+-.-.+.+ .||+ ..-.....+. =...|..
T Consensus 23 ~k~~~flv~V~cqgrsW~v~RSyEdfr~LD~~LHrCiyDRr~S~L~eL~~----------~~~l~~~~~~---~~~~l~~ 89 (113)
T cd07299 23 EKDLVFLVQVTCQGRSWMVLRSYEDFRTLDAHLHRCIFDRRFSQLLELPP----------LCEIGDRLQI---LTPLLSE 89 (113)
T ss_pred CCceEEEEEEEecCcceEEeeeHHHHHHHHHHHHHHHHhhhhhhhhccCc----------cccccchHHH---HHHHHHH
Confidence 457999999999888999999999999999998874333322 5552 1111112222 3458999
Q ss_pred HHHHHhccCCCCCChhhhhcccc
Q 002283 758 CLQSILHSSSFSSPPNALITFLS 780 (943)
Q Consensus 758 YLQ~LLsh~~~ls~SevL~eFLe 780 (943)
||.++.......-++-.+..||+
T Consensus 90 YL~RlS~Ia~~~inCGPVLtWme 112 (113)
T cd07299 90 YLNRLTGIVDSNLNCGPVLTWME 112 (113)
T ss_pred HHHHHHHHhcCCccccccceeee
Confidence 99998774333333344555654
No 80
>KOG4773 consensus NADPH oxidase [Energy production and conversion]
Probab=96.28 E-value=0.0064 Score=68.01 Aligned_cols=93 Identities=20% Similarity=0.183 Sum_probs=70.9
Q ss_pred CccccEEEEEEEEE-CCceEEEEeecccHHHHHHHHHhhcccCC----------CCCCCCCcccccccccccCCCCHHHH
Q 002283 680 GVKEYTVYKIRVWS-GKDQWEVERRYRDFYTLYRRLKSLSADEG----------WSLPSPWSSVEKESRKIFGNVSPLVV 748 (943)
Q Consensus 680 GvksYTVY~IrV~s-g~~eWtV~RRYSEF~eLHqrLke~Fp~~~----------L~LP~p~~sVeK~PKKlFGn~speFI 748 (943)
+..++.+|+|.|+. +..+..|+|||.+|++||.+|++.|+... .+||+ +++|+ +..+.-
T Consensus 34 ~f~~hFvyVievkw~~~se~vVyrry~E~~~~tkklee~f~~ss~k~t~l~~n~p~LpA---------~v~fd-fkqe~A 103 (386)
T KOG4773|consen 34 SFTSHFVYVIEVKWYGGSEGVVYRRYFEFHALTKKLEERFGPSSGKSTALACNLPTLPA---------IVYFD-FKQEIA 103 (386)
T ss_pred ccchheEEEEEehhhccccceeeeehhhhhhhcchHhhcCCCcccccCchhccCCCCcc---------eeEec-hhhhhh
Confidence 34458899998876 45789999999999999999999996532 15553 55565 567888
Q ss_pred HHHHHHHHHHHHHHhccCCCCCChhhhhcccccc
Q 002283 749 AHRSVLIQECLQSILHSSSFSSPPNALITFLSQQ 782 (943)
Q Consensus 749 EeRRkaLE~YLQ~LLsh~~~ls~SevL~eFLe~~ 782 (943)
|+|...|..|...|+.-+.-+...+.|.-|....
T Consensus 104 e~r~~~ln~y~e~LlslPi~~l~~p~l~~fffvs 137 (386)
T KOG4773|consen 104 EERIPALNAYCEWLLSLPIGRLGGPGLRPFFFVS 137 (386)
T ss_pred hhhhHHHHHHHHHHHhcchhhcCCCCceeeeeec
Confidence 9999999999999999766555556666665444
No 81
>KOG1660 consensus Sorting nexin SNX6/TFAF2, contains PX domain [Defense mechanisms]
Probab=75.36 E-value=4.9 Score=45.99 Aligned_cols=93 Identities=16% Similarity=0.138 Sum_probs=56.1
Q ss_pred ceEEEEeecccHHHHHHHHHhhcccCCCCCCCCCc------cccccccccc--CCCC-HH-----------HHHHHH---
Q 002283 696 DQWEVERRYRDFYTLYRRLKSLSADEGWSLPSPWS------SVEKESRKIF--GNVS-PL-----------VVAHRS--- 752 (943)
Q Consensus 696 ~eWtV~RRYSEF~eLHqrLke~Fp~~~L~LP~p~~------sVeK~PKKlF--Gn~s-pe-----------FIEeRR--- 752 (943)
.+..|.|--.+|.|||..+...--..++.+|++|. +.++.-|-=- |.+. .+ +++.-+
T Consensus 55 ~e~~v~r~Heef~wlh~~i~~~e~yaG~iiPp~p~~p~fda~reklQkLGeGe~~mTkEEf~KmK~elEaeyLA~fKKTv 134 (399)
T KOG1660|consen 55 PEFSVVRQHEEFVWLHDTIEENEDYAGVIIPPAPPRPDFDASREKLQKLGEGEGWMTKEEFLKMKQELEAEYLARFKKTV 134 (399)
T ss_pred CccceeeeecceeeeeehhhhccCcCceecCCCCCCCCCCCChHHHHHhcCCcccccHHHHHHHHHHhhhHHHHHHHHhh
Confidence 56789999999999999988643333333343221 1111100001 2232 22 333222
Q ss_pred HHHHHHHHHHhccCCCCCChhhhhcccccccccCCCC
Q 002283 753 VLIQECLQSILHSSSFSSPPNALITFLSQQESLRNSP 789 (943)
Q Consensus 753 kaLE~YLQ~LLsh~~~ls~SevL~eFLe~~~s~~~SP 789 (943)
..=+.|||+|+.| |.++....+..||+.....++.+
T Consensus 135 amhEvfl~Rlaah-Pvlr~d~nf~vflEy~qdLsvr~ 170 (399)
T KOG1660|consen 135 AMHEVFLRRLAAH-PVLRLDQNFSVFLEYDQDLSVRG 170 (399)
T ss_pred ccHHHHHHHHhcC-Ceeecccchhhhhhhcccccccc
Confidence 2346799999997 56777788999999997776666
No 82
>PLN02866 phospholipase D
Probab=73.15 E-value=4.4 Score=51.77 Aligned_cols=98 Identities=18% Similarity=0.229 Sum_probs=61.6
Q ss_pred cEEEEEEEEECCceEEEEeecccHHHHHHHHHhh----------------cccCCC----------------CCCCCCc-
Q 002283 684 YTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSL----------------SADEGW----------------SLPSPWS- 730 (943)
Q Consensus 684 YTVY~IrV~sg~~eWtV~RRYSEF~eLHqrLke~----------------Fp~~~L----------------~LP~p~~- 730 (943)
-..|+|+++....+|+++++=++-.-||-.|++. ....++ .+|....
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (1068)
T PLN02866 32 LLSYTIELQYKQFKWTLYKKASQVLYLHFALKKRAFIEELHEKQEQVKEWLQNLGIGDHPAVVQDDDEPDDGTVPLHHDE 111 (1068)
T ss_pred EEEEEEEEEEeeeeeehhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCccccccccccccccccccchh
Confidence 4679999999889999999887766666555442 111111 2332100
Q ss_pred -----ccc---ccc--ccccCCCCHHHHHHHHHHHHHHHHHHhccCCCCCChhhhhccccccc
Q 002283 731 -----SVE---KES--RKIFGNVSPLVVAHRSVLIQECLQSILHSSSFSSPPNALITFLSQQE 783 (943)
Q Consensus 731 -----sVe---K~P--KKlFGn~speFIEeRRkaLE~YLQ~LLsh~~~ls~SevL~eFLe~~~ 783 (943)
.|+ +.| +-.+|+ .+.+...++.+||.||+.+|.+. .+.+++.+.+||+.+.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~r~~~~~~~yL~~~l~~~-~~~n~~~~~~FlevS~ 172 (1068)
T PLN02866 112 SAKNRDVPSSAALPVIRPALGR-QQSISDRAKVAMQEYLNHFLGNL-DIVNSREVCKFLEVSK 172 (1068)
T ss_pred hcccCCCcchhhcceeccccCC-CccccHHHHHHHHHHHHHHhccc-hhcCCHhhhhheeece
Confidence 000 011 011232 45566777788999999999975 5566788899999985
No 83
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=51.29 E-value=13 Score=47.00 Aligned_cols=98 Identities=16% Similarity=0.237 Sum_probs=61.4
Q ss_pred cccEEEEEEEEECCceEEEEeecccHHHHHHHHHhhcccCCCCCCCCCc-ccc-cccccccCC-CCHHHHHHHHHHHHHH
Q 002283 682 KEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEGWSLPSPWS-SVE-KESRKIFGN-VSPLVVAHRSVLIQEC 758 (943)
Q Consensus 682 ksYTVY~IrV~sg~~eWtV~RRYSEF~eLHqrLke~Fp~~~L~LP~p~~-sVe-K~PKKlFGn-~speFIEeRRkaLE~Y 758 (943)
.+-+.|++.+.++...|+|++-++.|..||..|...-. ...+|.-.. .+. ..-++.-+. .+....-+|++.||.|
T Consensus 64 ~~~~~y~v~L~hG~l~~~i~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~e~Y 141 (887)
T KOG1329|consen 64 PSSGSYTVELLHGTLDWTIKKATKLHNMLHFHLHARLL--GESFPDLGRLNINDNHDEKPSGPRSSLNSSMEKRKTLENY 141 (887)
T ss_pred cCCcceeeeeecCcEEEEEEecchhhhHHhHHHhhhhh--cccccccccccccccccccCCCccCCcccchhhhhhccch
Confidence 34578999999999999999999999999999865211 112231000 000 000111111 1222224666679999
Q ss_pred HHHHhccCCCCCChhhhhcccccc
Q 002283 759 LQSILHSSSFSSPPNALITFLSQQ 782 (943)
Q Consensus 759 LQ~LLsh~~~ls~SevL~eFLe~~ 782 (943)
|+.++.. ..+.....+.+||+.+
T Consensus 142 lt~~l~~-~~~~~t~~~~~f~e~s 164 (887)
T KOG1329|consen 142 LTVVLHK-ARYRRTHVIYEFLENS 164 (887)
T ss_pred heeeech-hhhhchhhhhcccccc
Confidence 9999995 5566667788898777
No 84
>COG2174 RPL34A Ribosomal protein L34E [Translation, ribosomal structure and biogenesis]
Probab=47.45 E-value=9 Score=36.60 Aligned_cols=46 Identities=24% Similarity=0.356 Sum_probs=32.3
Q ss_pred ccccccccccccccCcchhh-hhhhccccCCcccccccceeecCCCCC
Q 002283 836 QHYTCAGCHKHFDDGITLMQ-DFVQTLGWGKPRLCEYTGQLFCSTCHT 882 (943)
Q Consensus 836 Q~yrCAgC~~~Ii~Gl~sLR-d~LktLtv~k~RlC~YtG~YYCs~CH~ 882 (943)
...+||.|+.+|. |+...| -.+.++...+-+.-.--|-|+|..|-.
T Consensus 33 ~~p~C~~cg~pL~-Gi~r~RP~e~~r~skt~krp~RpYGG~lc~~c~~ 79 (93)
T COG2174 33 TIPKCAICGRPLG-GIPRGRPREFRRLSKTKKRPERPYGGYLCANCVR 79 (93)
T ss_pred CCCcccccCCccC-CccCCCcHHHHhccccccCcCCCcCceecHHHHH
Confidence 3467999999985 665443 235556666656677788899998854
No 85
>PRK11586 napB nitrate reductase cytochrome C550 subunit; Provisional
Probab=33.45 E-value=34 Score=35.28 Aligned_cols=17 Identities=29% Similarity=0.821 Sum_probs=13.5
Q ss_pred ceeecCCCCCCCcccCC
Q 002283 873 GQLFCSTCHTNETAVLP 889 (943)
Q Consensus 873 G~YYCs~CH~NdtsVIP 889 (943)
.+|||..||..+...=|
T Consensus 119 rRYfCtQCHVPQada~P 135 (149)
T PRK11586 119 RRYFCLQCHVPQADTAP 135 (149)
T ss_pred cceeeccccCccccCcc
Confidence 46999999999766555
No 86
>PRK13796 GTPase YqeH; Provisional
Probab=31.05 E-value=19 Score=40.83 Aligned_cols=41 Identities=17% Similarity=0.414 Sum_probs=21.3
Q ss_pred cccccccccccCcchhhhhhhccccCCcccccccceeecCCCCC
Q 002283 839 TCAGCHKHFDDGITLMQDFVQTLGWGKPRLCEYTGQLFCSTCHT 882 (943)
Q Consensus 839 rCAgC~~~Ii~Gl~sLRd~LktLtv~k~RlC~YtG~YYCs~CH~ 882 (943)
+|.|||+.|..-=.....|+....+.+.. -.+..+|..||.
T Consensus 2 ~C~GCG~~lq~~~~~~~Gy~p~~~~~~~~---~~~~~~C~RC~~ 42 (365)
T PRK13796 2 RCIGCGAAIQTEDKNKPGYAPASALKKGL---ETEEVYCQRCFR 42 (365)
T ss_pred cccCCCceeEcCCCCCCCCCCHHHhhccc---ccCCeEchhhhh
Confidence 69999997753222222333210000000 135689999995
No 87
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=29.90 E-value=19 Score=42.66 Aligned_cols=54 Identities=20% Similarity=0.287 Sum_probs=38.5
Q ss_pred eecccHHHHHHHHHhhcccCCCCCCCCCcccccccccccCCCCHHHHHHHHHHHHHHHHHHhcc
Q 002283 702 RRYRDFYTLYRRLKSLSADEGWSLPSPWSSVEKESRKIFGNVSPLVVAHRSVLIQECLQSILHS 765 (943)
Q Consensus 702 RRYSEF~eLHqrLke~Fp~~~L~LP~p~~sVeK~PKKlFGn~speFIEeRRkaLE~YLQ~LLsh 765 (943)
-||-||....+.|.-.-.. .-..|-. .--+|..+....+|+| +|-+||.-+..+
T Consensus 155 srYaEFK~V~r~l~~~eg~-l~~VPcS-------RadvFnsk~LTivEKr--~LMKFltfc~~y 208 (547)
T KOG4405|consen 155 SRYAEFKNVDRILAFREGE-LEQVPCS-------RADVFNSKSLTIVEKR--MLMKFLTFCQEY 208 (547)
T ss_pred hhhhhhhccchhhcccCCe-eeecCch-------HHhhhcccchhHHHHH--HHHHHHHHHHHh
Confidence 4799999998888743221 1256641 1246777889999998 678999888875
No 88
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=28.88 E-value=18 Score=29.70 Aligned_cols=34 Identities=26% Similarity=0.778 Sum_probs=22.7
Q ss_pred hhcccccccccccccccCcchhhhhhhccccCCcccccccceeecCCCCC
Q 002283 833 LESQHYTCAGCHKHFDDGITLMQDFVQTLGWGKPRLCEYTGQLFCSTCHT 882 (943)
Q Consensus 833 L~sQ~yrCAgC~~~Ii~Gl~sLRd~LktLtv~k~RlC~YtG~YYCs~CH~ 882 (943)
+=...++|+.|+++|..+ .+-...|++||..|+.
T Consensus 22 ~H~~Cf~C~~C~~~l~~~----------------~~~~~~~~~~C~~c~~ 55 (58)
T PF00412_consen 22 WHPECFKCSKCGKPLNDG----------------DFYEKDGKPYCKDCYQ 55 (58)
T ss_dssp EETTTSBETTTTCBTTTS----------------SEEEETTEEEEHHHHH
T ss_pred EEccccccCCCCCccCCC----------------eeEeECCEEECHHHHh
Confidence 445678899998877432 1344577888887763
No 89
>KOG2593 consensus Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=23.62 E-value=45 Score=39.40 Aligned_cols=48 Identities=23% Similarity=0.668 Sum_probs=32.9
Q ss_pred hhcccccccccccccccCcchhhhhhhccccCCcccccc-cceeecCCCCCC---CcccCCCceE
Q 002283 833 LESQHYTCAGCHKHFDDGITLMQDFVQTLGWGKPRLCEY-TGQLFCSTCHTN---ETAVLPARVL 893 (943)
Q Consensus 833 L~sQ~yrCAgC~~~Ii~Gl~sLRd~LktLtv~k~RlC~Y-tG~YYCs~CH~N---dtsVIPARVL 893 (943)
-..|.|+|..|.+... .| +-+ ++=+. +|.+.|..||.. +....|.+-.
T Consensus 124 t~~~~Y~Cp~C~kkyt-~L----ea~--------~L~~~~~~~F~C~~C~gelveDe~~~~~~e~ 175 (436)
T KOG2593|consen 124 TNVAGYVCPNCQKKYT-SL----EAL--------QLLDNETGEFHCENCGGELVEDENKLPSKES 175 (436)
T ss_pred cccccccCCccccchh-hh----HHH--------HhhcccCceEEEecCCCchhcccccCchHHH
Confidence 3468999999998763 11 222 22233 789999999998 7777886433
No 90
>PF03892 NapB: Nitrate reductase cytochrome c-type subunit (NapB); InterPro: IPR005591 The napB gene encodes a dihaem cytochrome c, the small subunit of a heterodimeric periplasmic nitrate reductase [].; PDB: 3O5A_B 3ML1_B 1OGY_L 1JNI_A.
Probab=23.07 E-value=25 Score=35.62 Aligned_cols=17 Identities=29% Similarity=0.876 Sum_probs=9.8
Q ss_pred ceeecCCCCCCCcccCC
Q 002283 873 GQLFCSTCHTNETAVLP 889 (943)
Q Consensus 873 G~YYCs~CH~NdtsVIP 889 (943)
.+|||..||......=|
T Consensus 108 ~RyfC~qCHvpQ~da~P 124 (133)
T PF03892_consen 108 RRYFCTQCHVPQADAKP 124 (133)
T ss_dssp CCCSGGGT--B-BSS--
T ss_pred ceeeeccccCccccCcc
Confidence 46899999999776655
No 91
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=22.78 E-value=49 Score=26.53 Aligned_cols=12 Identities=25% Similarity=0.775 Sum_probs=10.4
Q ss_pred ccceeecCCCCC
Q 002283 871 YTGQLFCSTCHT 882 (943)
Q Consensus 871 YtG~YYCs~CH~ 882 (943)
-.|+|||..||.
T Consensus 22 ~dG~~yC~~cG~ 33 (36)
T PF11781_consen 22 DDGFYYCDRCGH 33 (36)
T ss_pred cCCEEEhhhCce
Confidence 389999999986
Done!