Query 002283
Match_columns 943
No_of_seqs 311 out of 1225
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 20:02:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002283.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002283hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xte_A Serine/threonine-protei 99.8 3.4E-20 1.2E-24 179.1 8.8 109 657-784 7-116 (154)
2 3p0c_A Nischarin; structural g 99.8 1.7E-19 5.7E-24 170.3 8.8 93 681-783 33-125 (130)
3 3iq2_A Sorting nexin-7; SNX7, 99.8 4.9E-19 1.7E-23 168.6 10.1 96 680-785 22-127 (138)
4 4az9_A Sorting nexin-24; prote 99.8 2.8E-18 9.7E-23 162.3 12.1 87 682-782 39-125 (129)
5 2csk_A Sorting nexin 12; SNX12 99.8 9E-19 3.1E-23 167.2 8.5 93 680-783 24-131 (146)
6 1ocs_A Sorting nexin GRD19; so 99.8 1.1E-18 3.7E-23 170.3 9.1 120 643-782 24-158 (162)
7 2v14_A Kinesin-like motor prot 99.7 1.7E-18 6E-23 164.0 9.4 87 680-775 19-106 (134)
8 2ar5_A Phosphoinositide 3-kina 99.7 1.8E-18 6E-23 161.2 9.1 110 655-783 3-116 (121)
9 3lui_A Sorting nexin-17, SNX17 99.7 1.1E-18 3.9E-23 161.0 6.3 90 680-783 19-109 (115)
10 2i4k_A Sorting nexin-1, SNX1; 99.7 3.3E-19 1.1E-23 164.7 1.1 93 680-782 17-127 (128)
11 1h6h_A Neutrophil cytosol fact 99.7 4.3E-18 1.5E-22 161.5 7.3 93 681-783 34-136 (143)
12 2ett_A Sorting nexin-22; PX do 99.7 7.6E-18 2.6E-22 159.2 8.0 89 680-782 28-116 (128)
13 1kmd_A VAM7P, vacuolar morphog 99.7 3.6E-18 1.2E-22 157.6 5.3 89 682-783 17-115 (117)
14 1kq6_A NCF-1, P47PHOX, neutrop 99.7 3E-17 1E-21 156.1 9.2 108 655-783 4-122 (141)
15 2iwl_X Phosphatidylinositol-4- 99.7 1.8E-17 6.3E-22 157.6 4.9 111 653-782 16-130 (140)
16 3dyt_A Sorting nexin-9; 3-heli 99.6 2.3E-16 7.8E-21 170.6 7.4 107 658-783 21-129 (366)
17 4akv_A Sorting nexin-33; trans 99.6 1.5E-16 5.1E-21 173.7 3.1 92 680-783 57-149 (386)
18 2l73_A NADPH oxidase organizer 99.6 1.1E-15 3.9E-20 148.1 7.1 110 656-783 7-128 (149)
19 3hpc_X SNX5 protein; sprting n 99.5 8.3E-15 2.8E-19 144.1 8.8 92 683-784 24-152 (161)
20 2v6v_A BUD emergence protein 1 99.5 1.3E-14 4.5E-19 141.6 8.7 92 683-782 31-135 (156)
21 2wwe_A Phosphoinositide-3-kina 99.4 3.2E-13 1.1E-17 129.0 6.1 106 651-781 19-126 (127)
22 2dyb_A Neutrophil cytosol fact 99.4 4.8E-13 1.6E-17 143.0 7.2 91 682-782 38-138 (341)
23 2co8_A NEDD9 interacting prote 44.3 12 0.00041 32.0 2.5 39 830-884 35-75 (82)
24 1x68_A FHL5 protein; four-and- 37.4 23 0.00079 29.5 3.2 37 832-884 30-66 (76)
25 2d8x_A Protein pinch; LIM doma 34.4 8.9 0.0003 31.4 0.2 35 833-883 27-61 (70)
26 1wig_A KIAA1808 protein; LIM d 34.0 13 0.00044 31.1 1.1 39 833-886 27-65 (73)
27 1x64_A Alpha-actinin-2 associa 32.3 9.7 0.00033 32.9 0.1 37 830-882 44-80 (89)
28 2cor_A Pinch protein; LIM doma 31.5 12 0.0004 31.9 0.4 41 832-889 36-76 (79)
29 1ogy_B Diheme cytochrome C NAP 30.9 22 0.00074 34.6 2.2 18 872-889 93-110 (130)
30 3ec1_A YQEH GTPase; atnos1, at 30.9 10 0.00035 40.9 0.0 41 838-883 5-45 (369)
31 3f6q_B LIM and senescent cell 29.8 10 0.00035 30.7 -0.2 16 833-848 35-50 (72)
32 1x4u_A Zinc finger, FYVE domai 27.9 43 0.0015 29.3 3.4 65 836-914 13-79 (84)
33 2dar_A PDZ and LIM domain prot 27.8 14 0.00047 31.9 0.3 36 831-882 45-80 (90)
34 2ehe_A Four and A half LIM dom 26.7 34 0.0012 28.7 2.5 35 833-883 39-73 (82)
35 1jni_A NAPB;, diheme cytochrom 26.2 17 0.00057 35.1 0.5 17 873-889 93-109 (123)
36 1nyp_A Pinch protein; LIM doma 25.8 15 0.00052 29.7 0.1 15 833-847 27-41 (66)
37 1g47_A Pinch protein; LIM doma 25.7 13 0.00045 30.8 -0.2 13 835-847 37-49 (77)
38 1x4l_A Skeletal muscle LIM-pro 25.3 17 0.00057 29.9 0.3 35 833-883 31-65 (72)
39 1x61_A Thyroid receptor intera 22.8 18 0.00061 29.6 0.0 13 835-847 31-43 (72)
40 1vfy_A Phosphatidylinositol-3- 22.4 34 0.0012 29.2 1.7 60 838-915 12-71 (73)
41 2d8z_A Four and A half LIM dom 21.7 20 0.00069 29.2 0.1 15 833-847 27-41 (70)
42 2dj7_A Actin-binding LIM prote 21.6 30 0.001 29.5 1.2 35 831-882 36-70 (80)
43 3h2y_A GTPase family protein; 21.6 20 0.00067 38.8 0.0 38 838-882 5-42 (368)
44 1a7i_A QCRP2 (LIM1); LIM domai 21.6 22 0.00074 29.9 0.3 15 833-847 30-44 (81)
45 3ml1_B NAPB, diheme cytochrome 21.3 17 0.00056 35.6 -0.6 16 874-889 96-111 (135)
46 1x62_A C-terminal LIM domain p 21.0 12 0.00042 31.5 -1.4 35 832-882 36-70 (79)
47 1wyh_A SLIM 2, skeletal muscle 21.0 20 0.00068 29.3 -0.1 12 836-847 32-43 (72)
48 1x4k_A Skeletal muscle LIM-pro 20.8 20 0.00069 29.3 -0.1 13 835-847 31-43 (72)
49 2iyb_E Testin, TESS, TES; LIM 20.5 19 0.00064 29.3 -0.3 14 835-848 30-43 (65)
50 2cur_A Skeletal muscle LIM-pro 20.3 22 0.00074 29.0 -0.0 13 835-847 29-41 (69)
No 1
>1xte_A Serine/threonine-protein kinase SGK3; CISK, PX domain, transferase; 1.60A {Mus musculus} SCOP: d.189.1.1 PDB: 1xtn_A
Probab=99.81 E-value=3.4e-20 Score=179.06 Aligned_cols=109 Identities=27% Similarity=0.465 Sum_probs=93.8
Q ss_pred cceEEEeccccccCCccccccccCccccEEEEEEEEECCceEEEEeecccHHHHHHHHHhhcccCCCCCCCCCccccccc
Q 002283 657 IDGVEVIGAKQKKGDVSLSERLVGVKEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEGWSLPSPWSSVEKES 736 (943)
Q Consensus 657 Id~VEVVgakqkkGdvS~servvGvksYTVY~IrV~sg~~eWtV~RRYSEF~eLHqrLke~Fp~~~L~LP~p~~sVeK~P 736 (943)
|..|.|....... .|.+.|++|.|+|+.+...|+|+|||+||.+||++|++.||...++|| +
T Consensus 7 ~~~v~I~~~~~~~---------~~~~~~~~Y~I~v~~~~~~~~V~RRYsdF~~Lh~~L~~~~p~~~~plP---------~ 68 (154)
T 1xte_A 7 CPSVSIPSSDEHR---------EKKKRFTVYKVLVSVGRSEWFVFRRYAEFDKLYNSLKKQFPAMALKIP---------A 68 (154)
T ss_dssp CCEEEEEEEEEEE---------ETTEEEEEEEEEEEETTEEEEEEEEHHHHHHHHHHHHHHCGGGCCCCC---------C
T ss_pred CCEEEECCcEEEe---------cCCCCEEEEEEEEEECCEEEEEEeeHHHHHHHHHHHHHHCCCCcccCC---------C
Confidence 4456666554332 146789999999999889999999999999999999999998767788 6
Q ss_pred ccccC-CCCHHHHHHHHHHHHHHHHHHhccCCCCCChhhhhcccccccc
Q 002283 737 RKIFG-NVSPLVVAHRSVLIQECLQSILHSSSFSSPPNALITFLSQQES 784 (943)
Q Consensus 737 KKlFG-n~speFIEeRRkaLE~YLQ~LLsh~~~ls~SevL~eFLe~~~s 784 (943)
|++|| +++++|||+||++||.||+.|+.| +.+..+..|+.||+....
T Consensus 69 K~~~g~~~~~~~ie~Rr~~Le~yL~~l~~~-p~l~~s~~l~~FL~~~~~ 116 (154)
T 1xte_A 69 KRIFGDNFDPDFIKQRRAGLNEFIQNLVRY-PELYNHPDVRAFLQMDSP 116 (154)
T ss_dssp SCCSSCTTCHHHHHHHHHHHHHHHHHHTTC-HHHHTSHHHHHHTTTTCG
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHHHcC-hhhccChHHHHHhCCCCC
Confidence 99999 899999999999999999999997 567778999999998855
No 2
>3p0c_A Nischarin; structural genomics, structural genomics consortium, SGC, PX signaling protein; 2.27A {Homo sapiens}
Probab=99.78 E-value=1.7e-19 Score=170.32 Aligned_cols=93 Identities=33% Similarity=0.480 Sum_probs=84.8
Q ss_pred ccccEEEEEEEEECCceEEEEeecccHHHHHHHHHhhcccCCCCCCCCCcccccccccccCCCCHHHHHHHHHHHHHHHH
Q 002283 681 VKEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEGWSLPSPWSSVEKESRKIFGNVSPLVVAHRSVLIQECLQ 760 (943)
Q Consensus 681 vksYTVY~IrV~sg~~eWtV~RRYSEF~eLHqrLke~Fp~~~L~LP~p~~sVeK~PKKlFGn~speFIEeRRkaLE~YLQ 760 (943)
.++||+|.|+|+.+...|+|.||||||.+||++|++.++...++|| ||+++|+++++|||+||++||.||+
T Consensus 33 ~~~y~~Y~I~v~~~~~~~~V~RRYSdF~~L~~~L~~~~~~~~p~lP---------~K~~~g~~~~~~ie~Rr~~Le~yL~ 103 (130)
T 3p0c_A 33 VDTYTVYIIQVTDGSHEWTVKHRYSDFHDLHEKLVAERKIDKNLLP---------PKKIIGKNSRSLVEKREKDLEVYLQ 103 (130)
T ss_dssp SSSSCEEEEEEECSSCEEEEEEEHHHHHHHHHHHHHTTSSCTTSCC---------CCCCCSCCCSCSHHHHHHHHHHHHH
T ss_pred cCCEEEEEEEEEECCeEEEEEehHHHHHHHHHHHHHHcCCCCCCCC---------CccccccCCHHHHHHHHHHHHHHHH
Confidence 3689999999999888999999999999999999999987656788 6999999999999999999999999
Q ss_pred HHhccCCCCCChhhhhccccccc
Q 002283 761 SILHSSSFSSPPNALITFLSQQE 783 (943)
Q Consensus 761 ~LLsh~~~ls~SevL~eFLe~~~ 783 (943)
.|+.+ +.+..++.|..||++.+
T Consensus 104 ~l~~~-p~l~~s~~l~~FL~~~~ 125 (130)
T 3p0c_A 104 KLLAA-FPGVTPRVLAHFLHFHF 125 (130)
T ss_dssp HHHHT-SCSEECHHHHHHHHSCT
T ss_pred HHHcC-hhhhcCHHHHHHhCCCc
Confidence 99997 55778899999999863
No 3
>3iq2_A Sorting nexin-7; SNX7, PHOX, protein signalling, SGC, structur genomics consortium, protein transport, transport; 1.70A {Homo sapiens}
Probab=99.77 E-value=4.9e-19 Score=168.65 Aligned_cols=96 Identities=21% Similarity=0.302 Sum_probs=81.6
Q ss_pred CccccEEEEEEEEEC-----CceEEEEeecccHHHHHHHHHhhcccCCC-CCCCCCcccccccccccC----CCCHHHHH
Q 002283 680 GVKEYTVYKIRVWSG-----KDQWEVERRYRDFYTLYRRLKSLSADEGW-SLPSPWSSVEKESRKIFG----NVSPLVVA 749 (943)
Q Consensus 680 GvksYTVY~IrV~sg-----~~eWtV~RRYSEF~eLHqrLke~Fp~~~L-~LP~p~~sVeK~PKKlFG----n~speFIE 749 (943)
|.++||+|+|+|++. ...|+|.|||+||.+||++|++.||...+ +|| ||++++ +++++|||
T Consensus 22 g~~~yv~Y~I~v~t~~~~f~~~~~~V~RRYsdF~~L~~~L~~~~p~~~iP~lP---------~K~~~~~~~~~~~~~fie 92 (138)
T 3iq2_A 22 TIETFITYRIITKTSRGEFDSSEFEVRRRYQDFLWLKGKLEEAHPTLIIPPLP---------EKFIVKGMVERFNDDFIE 92 (138)
T ss_dssp SSCEEEEEEEEEESCSSSSSCCEEEEEEEHHHHHHHHHHHHHHCTTSCCCCCC---------CCC----CCGGGCHHHHH
T ss_pred CCCCEEEEEEEEEECCCCcCCCeEEEEcChHHHHHHHHHHHHHCcCcccCCCC---------cchhhccccccCCHHHHH
Confidence 578999999999874 36899999999999999999999987654 677 588764 46999999
Q ss_pred HHHHHHHHHHHHHhccCCCCCChhhhhccccccccc
Q 002283 750 HRSVLIQECLQSILHSSSFSSPPNALITFLSQQESL 785 (943)
Q Consensus 750 eRRkaLE~YLQ~LLsh~~~ls~SevL~eFLe~~~s~ 785 (943)
+||++||.||+.|+.+ +.+..++.|+.||+.....
T Consensus 93 ~Rr~~Le~fL~~l~~~-p~l~~s~~~~~FL~~~~~~ 127 (138)
T 3iq2_A 93 TRRKALHKFLNRIADH-PTLTFNEDFKIFLTAQAWE 127 (138)
T ss_dssp HHHHHHHHHHHHHHHS-TTGGGCHHHHHHHHTTCBC
T ss_pred HHHHHHHHHHHHHHcC-HhhhcChHHHhhhCCCCCC
Confidence 9999999999999997 5678889999999988543
No 4
>4az9_A Sorting nexin-24; protein transport; 1.75A {Homo sapiens}
Probab=99.76 E-value=2.8e-18 Score=162.31 Aligned_cols=87 Identities=29% Similarity=0.451 Sum_probs=75.8
Q ss_pred cccEEEEEEEEECCceEEEEeecccHHHHHHHHHhhcccCCCCCCCCCcccccccccccCCCCHHHHHHHHHHHHHHHHH
Q 002283 682 KEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEGWSLPSPWSSVEKESRKIFGNVSPLVVAHRSVLIQECLQS 761 (943)
Q Consensus 682 ksYTVY~IrV~sg~~eWtV~RRYSEF~eLHqrLke~Fp~~~L~LP~p~~sVeK~PKKlFGn~speFIEeRRkaLE~YLQ~ 761 (943)
++||+|.|+|+.++..|+|+||||||.+||++|++.++. ++|| +|.+++++++|||+||++||.||+.
T Consensus 39 k~y~vY~I~v~~~~~~w~V~RRYsdF~~L~~~L~~~~~~--p~lP----------~K~~~~~~~~~ie~Rr~~Le~yL~~ 106 (129)
T 4az9_A 39 RGYTVFKIEVLMNGRKHFVEKRYSEFHALHKKLKKCIKT--PEIP----------SKHVRNWVPKVLEQRRQGLETYLQA 106 (129)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEHHHHHHHHHHHTTTSCC--CCCC----------CSCCSCCCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEEEECCEEEEEEeeHHHHHHHHHHHHHhCCC--CCCC----------cccccCCCHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999987763 3444 5667899999999999999999999
Q ss_pred HhccCCCCCChhhhhcccccc
Q 002283 762 ILHSSSFSSPPNALITFLSQQ 782 (943)
Q Consensus 762 LLsh~~~ls~SevL~eFLe~~ 782 (943)
|+.++.. . +++|++||++.
T Consensus 107 ll~~~~~-~-~~~l~~FL~~~ 125 (129)
T 4az9_A 107 VILENEE-L-PKLFLDFLNVR 125 (129)
T ss_dssp HHHHCSS-C-CHHHHHHTTC-
T ss_pred HHhCchh-h-CHHHHHHCCCC
Confidence 9998653 3 67899999875
No 5
>2csk_A Sorting nexin 12; SNX12, PX domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=9e-19 Score=167.20 Aligned_cols=93 Identities=22% Similarity=0.332 Sum_probs=79.6
Q ss_pred CccccEEEEEEEEEC-----CceEEEEeecccHHHHHHHHHhhcccCC-CCCCCCCccccccccccc---------CCCC
Q 002283 680 GVKEYTVYKIRVWSG-----KDQWEVERRYRDFYTLYRRLKSLSADEG-WSLPSPWSSVEKESRKIF---------GNVS 744 (943)
Q Consensus 680 GvksYTVY~IrV~sg-----~~eWtV~RRYSEF~eLHqrLke~Fp~~~-L~LP~p~~sVeK~PKKlF---------Gn~s 744 (943)
|.+.|++|.|+|++. ...|+|.|||+||.+||++|++. +... ++|| ||+++ |+++
T Consensus 24 g~~~yv~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~-~~~~iP~lP---------~K~~~~~~~~~~~~g~~~ 93 (146)
T 2csk_A 24 GRARFTTYEVRMRTNLPIFKLKESCVRRRYSDFEWLKNELERD-SKIVVPPLP---------GKALKRQLPFRGDEGIFE 93 (146)
T ss_dssp SSSCEEEEEEEEECCCSSSSCSEEEEEECHHHHHHHHHHHSSS-SSCCCCCCS---------CCCCCCSSTTCCCSSCCC
T ss_pred CCCCEEEEEEEEEECCCCcCcCceEEEecHHHHHHHHHHHHhc-cCCcCCCCC---------CCchhhccccccccCCCC
Confidence 568999999999875 46899999999999999999986 4332 3666 58877 6799
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCChhhhhccccccc
Q 002283 745 PLVVAHRSVLIQECLQSILHSSSFSSPPNALITFLSQQE 783 (943)
Q Consensus 745 peFIEeRRkaLE~YLQ~LLsh~~~ls~SevL~eFLe~~~ 783 (943)
++|||+||++||.||+.|+.|+ .+..++.|..||+..+
T Consensus 94 ~~fie~Rr~~Le~fL~~l~~~p-~l~~s~~l~~FL~~~~ 131 (146)
T 2csk_A 94 ESFIEERRQGLEQFINKIAGHP-LAQNERCLHMFLQEEA 131 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCH-HHHHCHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHHHcCh-hhccCcHHHhhcCCCc
Confidence 9999999999999999999974 6777899999999873
No 6
>1ocs_A Sorting nexin GRD19; sorting protein, PX-domain, yeast protein; HET: CME; 2.03A {Saccharomyces cerevisiae} SCOP: d.189.1.1 PDB: 1ocu_A*
Probab=99.75 E-value=1.1e-18 Score=170.27 Aligned_cols=120 Identities=21% Similarity=0.251 Sum_probs=89.2
Q ss_pred CCCCCCCCCCCccccceEEEecccccc--CCccccccccCccccEEEEEEEEE-----CCceEEEEeecccHHHHHHHHH
Q 002283 643 GTDDAYPLTLVPLRIDGVEVIGAKQKK--GDVSLSERLVGVKEYTVYKIRVWS-----GKDQWEVERRYRDFYTLYRRLK 715 (943)
Q Consensus 643 stdDAy~l~~~~lkId~VEVVgakqkk--GdvS~servvGvksYTVY~IrV~s-----g~~eWtV~RRYSEF~eLHqrLk 715 (943)
+.++.|..+... -.|.|..+.+.. | ..|.+.|++|+|+|++ ....|.|+|||+||.+||++|+
T Consensus 24 ~~~~~~~~p~~~---l~i~V~dp~~~~~~g-------~~~~~~yv~Y~I~v~~~~~~f~~~~~~V~RRYsdF~~Lh~~L~ 93 (162)
T 1ocs_A 24 SYSEIYAEPENF---LEIEVHNPKTHIPNG-------MDSKGMFTDYEIICRTNLPSFHKRVSKVRRRYSDFEFFRKCLI 93 (162)
T ss_dssp ------CCSSCC---EEEEEEEEEEECCCS-------TTSCCCEEEEEEEEEECCTTCSCSEEEEEEEHHHHHHHHHHHH
T ss_pred ChhhhccCCCCe---EEEEEeCCEEeeccC-------CCCCCCeEEEEEEEEECCCCCCcceeEEEeeHHHHHHHHHHHH
Confidence 345666554443 355555544331 1 1257899999999987 3578999999999999999999
Q ss_pred hhc-----ccCCC-CCCCCCcccccccccccC-CCCHHHHHHHHHHHHHHHHHHhccCCCCCC-hhhhhcccccc
Q 002283 716 SLS-----ADEGW-SLPSPWSSVEKESRKIFG-NVSPLVVAHRSVLIQECLQSILHSSSFSSP-PNALITFLSQQ 782 (943)
Q Consensus 716 e~F-----p~~~L-~LP~p~~sVeK~PKKlFG-n~speFIEeRRkaLE~YLQ~LLsh~~~ls~-SevL~eFLe~~ 782 (943)
+.| |...+ +|| +|++|+ +++++|||+||++||.||+.|+.|+ .+.. +++|+.||+..
T Consensus 94 ~~~~~~~~p~~~iP~lP---------~K~~~~~~~~~~fie~Rr~~Le~fL~~l~~~p-~l~~~s~~l~~FL~~~ 158 (162)
T 1ocs_A 94 KEISMLNHPKVMVPHLP---------GKILLSNRFSNEVIEERRQGLNTWMQSVAGHP-LLQSGSKVLVRFIEAE 158 (162)
T ss_dssp HHHHHTTCTTCCCCCCT---------TCCCSSCTTSHHHHHHHHHHHHHHHHHHHTCH-HHHHHCHHHHHHHHCS
T ss_pred HHhccccCCCccCCCCC---------CCcccccCCCHHHHHHHHHHHHHHHHHHHcCH-HhhhCCHHHHHhCCCc
Confidence 998 65443 666 688875 5899999999999999999999974 5665 78999999875
No 7
>2v14_A Kinesin-like motor protein C20ORF23; plus-END kinesin complex, transport protein, phosphatidylinositol 3-phosphate binding, nucleotide-binding; 2.20A {Homo sapiens}
Probab=99.75 E-value=1.7e-18 Score=163.95 Aligned_cols=87 Identities=23% Similarity=0.386 Sum_probs=77.1
Q ss_pred CccccEEEEEEEEECCceEEEEeecccHHHHHHHHHhhcccCC-CCCCCCCcccccccccccCCCCHHHHHHHHHHHHHH
Q 002283 680 GVKEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEG-WSLPSPWSSVEKESRKIFGNVSPLVVAHRSVLIQEC 758 (943)
Q Consensus 680 GvksYTVY~IrV~sg~~eWtV~RRYSEF~eLHqrLke~Fp~~~-L~LP~p~~sVeK~PKKlFGn~speFIEeRRkaLE~Y 758 (943)
|.+.|++|.|+|+.+...|+|.||||||.+||++|++.||... ++|| ||++||+++++|||+||++||.|
T Consensus 19 ~~~~~~~Y~I~v~~~~~~~~V~RRYsdF~~L~~~L~~~~p~~~~p~lP---------~K~~~~~~~~~~ie~Rr~~Le~y 89 (134)
T 2v14_A 19 GKDAHFEFEVKITVLDETWTVFRRYSRFREMHKTLKLKYAELAALEFP---------PKKLFGNKDERVIAERRSHLEKY 89 (134)
T ss_dssp TTSCEEEEEEEEEETTEEEEEEECHHHHHHHHHHHHHHCGGGGGCCCC---------CCCSSCTTSHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEEEEECCeEEEEEeeHHHHHHHHHHHHHHCCCCCCCCCc---------CCccccCCCHHHHHHHHHHHHHH
Confidence 4568999999999988999999999999999999999998754 4788 69999999999999999999999
Q ss_pred HHHHhccCCCCCChhhh
Q 002283 759 LQSILHSSSFSSPPNAL 775 (943)
Q Consensus 759 LQ~LLsh~~~ls~SevL 775 (943)
|+.|+.|+..++.++.+
T Consensus 90 L~~ll~~~~~l~~sp~~ 106 (134)
T 2v14_A 90 LRDFFSVMLQSATSPLH 106 (134)
T ss_dssp HHHHHHHHHHCTTSTTC
T ss_pred HHHHHhChHhhcCCHHH
Confidence 99999986546666543
No 8
>2ar5_A Phosphoinositide 3-kinase; PX domain, transferase; 1.80A {Homo sapiens} PDB: 2rea_A 2red_A
Probab=99.75 E-value=1.8e-18 Score=161.20 Aligned_cols=110 Identities=22% Similarity=0.278 Sum_probs=91.7
Q ss_pred cccceEEEeccccccCCccccccccCccccEEEEEEEEECC--ceEEEEeecccHHHHHHHHHhhcccCCC-CCCCCCcc
Q 002283 655 LRIDGVEVIGAKQKKGDVSLSERLVGVKEYTVYKIRVWSGK--DQWEVERRYRDFYTLYRRLKSLSADEGW-SLPSPWSS 731 (943)
Q Consensus 655 lkId~VEVVgakqkkGdvS~servvGvksYTVY~IrV~sg~--~eWtV~RRYSEF~eLHqrLke~Fp~~~L-~LP~p~~s 731 (943)
..|..|.|.+..++.. +. .|++|.|+|+..+ ..|.|+|||+||.+||++|++.||...+ +||
T Consensus 3 ~~i~~v~V~~~ek~~~---------~~-k~y~Y~I~v~~~~~~~~~~V~RRYseF~~Lh~~L~~~fp~~~lP~lP----- 67 (121)
T 2ar5_A 3 GRIKEVSVFTYHKKYN---------PD-KHYIYVVRILREGQIEPSFVFRTFDEFQELHNKLSIIFPLWKLPGFP----- 67 (121)
T ss_dssp SSEEEEEEEEEECCCS---------SS-SCCEEEEEEEETTCSSCEEEEEEHHHHHHHHHHHHHHSCGGGSCCCC-----
T ss_pred CeEEEEEECcEEEEec---------CC-CcEEEEEEEEECCCceeEEEEEEHHHHHHHHHHHHHHCCCCCCCCCC-----
Confidence 3577888888655422 33 4445999999865 5899999999999999999999998653 677
Q ss_pred cccccccccCCC-CHHHHHHHHHHHHHHHHHHhccCCCCCChhhhhccccccc
Q 002283 732 VEKESRKIFGNV-SPLVVAHRSVLIQECLQSILHSSSFSSPPNALITFLSQQE 783 (943)
Q Consensus 732 VeK~PKKlFGn~-speFIEeRRkaLE~YLQ~LLsh~~~ls~SevL~eFLe~~~ 783 (943)
+|++||+. +.+|+|+||++||.||+.|+++++.++.++.++.||++.-
T Consensus 68 ----~K~~~g~~~~~~~~e~Rr~~Le~yL~~ll~~p~~i~~s~~v~~Ff~~~~ 116 (121)
T 2ar5_A 68 ----NRMVLGRTHIKDVAAKRKIELNSYLQSLMNASTDVAECDLVCTFFHGSH 116 (121)
T ss_dssp ----CCCCSSSSSTTHHHHHHHHHHHHHHHHHHTSCHHHHTSHHHHHHTSSSC
T ss_pred ----CCeecCccCcHHHHHHHHHHHHHHHHHHHhCCchhcCCHHHHHHcCCcc
Confidence 58889875 6899999999999999999998788999999999999874
No 9
>3lui_A Sorting nexin-17, SNX17; PX domain, endosome, phosphoprotein, P transport, transport; 1.80A {Homo sapiens} PDB: 3fog_A
Probab=99.74 E-value=1.1e-18 Score=160.98 Aligned_cols=90 Identities=20% Similarity=0.395 Sum_probs=78.1
Q ss_pred CccccEEEEEEEEECCceEEEEeecccHHHHHHHHHhhcccCC-CCCCCCCcccccccccccCCCCHHHHHHHHHHHHHH
Q 002283 680 GVKEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEG-WSLPSPWSSVEKESRKIFGNVSPLVVAHRSVLIQEC 758 (943)
Q Consensus 680 GvksYTVY~IrV~sg~~eWtV~RRYSEF~eLHqrLke~Fp~~~-L~LP~p~~sVeK~PKKlFGn~speFIEeRRkaLE~Y 758 (943)
|.++||+|+|+|. ..|.|.||||||.+||++|++.||... ++|| ||++++ ++++|||+||++||.|
T Consensus 19 g~~~y~~Y~I~v~---~~~~V~RRYsdF~~L~~~L~~~~~~~~~P~lP---------~K~~~~-~~~~~ie~Rr~~Le~y 85 (115)
T 3lui_A 19 GGSAYVAYNIHVN---GVLHCRVRYSQLLGLHEQLRKEYGANVLPAFP---------PKKLFS-LTPAEVEQRREQLEKY 85 (115)
T ss_dssp --CCEEEEEEEET---TEEEEEEEHHHHHHHHHHHHHHHCSTTSCCCC---------CCCSSC-CCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEEEEC---CeEEEEecHHHHHHHHHHHHHHcCCCcCCCCC---------CCcccC-CCHHHHHHHHHHHHHH
Confidence 5689999999984 489999999999999999999998764 4777 688885 8999999999999999
Q ss_pred HHHHhccCCCCCChhhhhccccccc
Q 002283 759 LQSILHSSSFSSPPNALITFLSQQE 783 (943)
Q Consensus 759 LQ~LLsh~~~ls~SevL~eFLe~~~ 783 (943)
|+.|+.| +.+..++.|+.||+..+
T Consensus 86 L~~l~~~-p~l~~s~~~~~FL~~~~ 109 (115)
T 3lui_A 86 MQAVRQD-PLLGSSETFNSFLRRAQ 109 (115)
T ss_dssp HHHHHHS-HHHHHCHHHHHHHHHHH
T ss_pred HHHHHcC-hhhhcChHHHHHHCcCH
Confidence 9999997 56777899999998764
No 10
>2i4k_A Sorting nexin-1, SNX1; 3-stranded beta sheet, 3 alpha helices, proline rich loop, protein transport; NMR {Homo sapiens}
Probab=99.73 E-value=3.3e-19 Score=164.68 Aligned_cols=93 Identities=25% Similarity=0.509 Sum_probs=80.0
Q ss_pred CccccEEEEEEEEEC-----CceEEEEeecccHHHHHHHHHhhcccCCC---CCCCCCcccccccccccCC---------
Q 002283 680 GVKEYTVYKIRVWSG-----KDQWEVERRYRDFYTLYRRLKSLSADEGW---SLPSPWSSVEKESRKIFGN--------- 742 (943)
Q Consensus 680 GvksYTVY~IrV~sg-----~~eWtV~RRYSEF~eLHqrLke~Fp~~~L---~LP~p~~sVeK~PKKlFGn--------- 742 (943)
|.+.|++|.|+|++. ...|+|.|||+||.+||++|++.||..+. +|| +|+++++
T Consensus 17 g~~~~~~Y~I~v~~~~~~~~~~~~~V~RRYsdF~~L~~~L~~~~~~~~~~iP~lP---------~K~~~~~~~~~~~~~~ 87 (128)
T 2i4k_A 17 GMNAYVAYKVTTQTSLPLFRSKQFAVKRRFSDFLGLYEKLSEKHSQNGFIVPPPP---------EKSLIGMTKVKVGKED 87 (128)
T ss_dssp SSCCCBCCCBCCCCCSSSSCSSCCCBCCCHHHHHHHHHHHHHTCSSSSCCCCSSS---------SCCSSSSSSCCCCSCC
T ss_pred CCcCEEEEEEEEEEcCCCCCCCeEEEEeEhHHHHHHHHHHHHhCCCCCcCcCCCC---------CCcccchhhhhhcCCC
Confidence 567999999999863 57899999999999999999999976443 555 5888764
Q ss_pred -CCHHHHHHHHHHHHHHHHHHhccCCCCCChhhhhcccccc
Q 002283 743 -VSPLVVAHRSVLIQECLQSILHSSSFSSPPNALITFLSQQ 782 (943)
Q Consensus 743 -~speFIEeRRkaLE~YLQ~LLsh~~~ls~SevL~eFLe~~ 782 (943)
++++|||+||++||.||+.|+.| +.+..++.|+.||+.+
T Consensus 88 ~~~~~~ie~Rr~~Le~fL~~l~~~-p~l~~s~~~~~FL~~~ 127 (128)
T 2i4k_A 88 SSSAEFLEKRRAALERYLQRIVNH-PTMLQDPDVREFLEKE 127 (128)
T ss_dssp CSSTTHHHHHHHHHHHHHHHHHHC-HHHHCSHHHHTTTTCC
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcC-cccccChHHHHhhCCC
Confidence 48999999999999999999997 5678889999999875
No 11
>1h6h_A Neutrophil cytosol factor 4; PX domain; HET: PIB; 1.7A {Homo sapiens} SCOP: d.189.1.1
Probab=99.72 E-value=4.3e-18 Score=161.54 Aligned_cols=93 Identities=19% Similarity=0.285 Sum_probs=80.5
Q ss_pred ccccEEEEEEEEEC-CceEEEEeecccHHHHHHHHHhhcccCC---------CCCCCCCcccccccccccCCCCHHHHHH
Q 002283 681 VKEYTVYKIRVWSG-KDQWEVERRYRDFYTLYRRLKSLSADEG---------WSLPSPWSSVEKESRKIFGNVSPLVVAH 750 (943)
Q Consensus 681 vksYTVY~IrV~sg-~~eWtV~RRYSEF~eLHqrLke~Fp~~~---------L~LP~p~~sVeK~PKKlFGn~speFIEe 750 (943)
...|++|.|+|+.. +..|+|+|||+||.+||++|++.||... ++|| +|++||+ +++|||+
T Consensus 34 ~~~~~vY~I~v~~~~~~~~~V~RRYsdF~~Lh~~L~~~~p~~~~~~~~~~~lP~lP---------~K~~~~~-~~~~ie~ 103 (143)
T 1h6h_A 34 FTSHFVFVIEVKTKGGSKYLIYRRYRQFHALQSKLEERFGPDSKSSALACTLPTLP---------AKVYVGV-KQEIAEM 103 (143)
T ss_dssp SSCEEEEEEEEEETTSCEEEEEEEHHHHHHHHHHHHHHHSTTCSCGGGCCCCCCCC---------CCCCSSC-HHHHHHH
T ss_pred CCCeEEEEEEEEEcCCCEEEEEeeHHHHHHHHHHHHHHCccccccCCCCCCcccCC---------CCcccCc-CHHHHHH
Confidence 35799999999864 6799999999999999999999998532 3666 5889998 9999999
Q ss_pred HHHHHHHHHHHHhccCCCCCChhhhhccccccc
Q 002283 751 RSVLIQECLQSILHSSSFSSPPNALITFLSQQE 783 (943)
Q Consensus 751 RRkaLE~YLQ~LLsh~~~ls~SevL~eFLe~~~ 783 (943)
||++||.||+.|+.++..+..++.|+.||+...
T Consensus 104 Rr~~Le~yL~~ll~~p~~l~~s~~~~~Fl~~~~ 136 (143)
T 1h6h_A 104 RIPALNAYMKSLLSLPVWVLMDEDVRIFFYQSP 136 (143)
T ss_dssp HHHHHHHHHHHHTTSCHHHHTCHHHHHHHSCCH
T ss_pred HHHHHHHHHHHHHcCCHhhhcCHHHHHHhCCCc
Confidence 999999999999997654677899999998863
No 12
>2ett_A Sorting nexin-22; PX domain, BC019655, SNX22_human, HS.157607, structural genomics,protein structure initiative PSI; NMR {Homo sapiens}
Probab=99.71 E-value=7.6e-18 Score=159.20 Aligned_cols=89 Identities=26% Similarity=0.382 Sum_probs=78.0
Q ss_pred CccccEEEEEEEEECCceEEEEeecccHHHHHHHHHhhcccCCCCCCCCCcccccccccccCCCCHHHHHHHHHHHHHHH
Q 002283 680 GVKEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEGWSLPSPWSSVEKESRKIFGNVSPLVVAHRSVLIQECL 759 (943)
Q Consensus 680 GvksYTVY~IrV~sg~~eWtV~RRYSEF~eLHqrLke~Fp~~~L~LP~p~~sVeK~PKKlFGn~speFIEeRRkaLE~YL 759 (943)
+.+.|++|.|+|+..+..|+|.||||||.+||++|++.|+ .++|| ||+ +++++++|||+||++||.||
T Consensus 28 ~~~~~~~Y~I~v~~~~~~~~V~RRYSdF~~Lh~~L~~~~~--iP~lP---------~K~-~~~~~~~~ie~Rr~~Le~yL 95 (128)
T 2ett_A 28 PEKSHMVFRVEVLCSGRRHTVPRRYSEFHALHKRIKKLYK--VPDFP---------SKR-LPNWRTRGLEQRRQGLEAYI 95 (128)
T ss_dssp SSCCCCEEEEEEEETTEEEEEEEEHHHHHHHHHHHHTTSS--CCCCC---------CSS-CCCSSSSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEEEEEECCcEEEEECCHHHHHHHHHHHHHHCC--CCCCC---------CCc-cCCCCHHHHHHHHHHHHHHH
Confidence 4578999999999988999999999999999999999885 24666 466 45899999999999999999
Q ss_pred HHHhccCCCCCChhhhhcccccc
Q 002283 760 QSILHSSSFSSPPNALITFLSQQ 782 (943)
Q Consensus 760 Q~LLsh~~~ls~SevL~eFLe~~ 782 (943)
+.|+.++..+ +.+|..||+..
T Consensus 96 ~~ll~~p~~~--s~~l~~FL~~~ 116 (128)
T 2ett_A 96 QGILYLNQEV--PKELLEFLRLR 116 (128)
T ss_dssp HHHHHHSSSS--CHHHHHHHTCT
T ss_pred HHHHhCchhc--CHHHHHhcCCc
Confidence 9999986544 58999999977
No 13
>1kmd_A VAM7P, vacuolar morphogenesis protein VAM7; PX domain, phosphoinositide binding, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: d.189.1.1
Probab=99.71 E-value=3.6e-18 Score=157.60 Aligned_cols=89 Identities=16% Similarity=0.257 Sum_probs=76.6
Q ss_pred cccEEEEEEEEECCceEEEEeecccHHHHHHHHHhhcccCCC-CCCCCCccccccccccc-------CCCCHHHHHHHHH
Q 002283 682 KEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEGW-SLPSPWSSVEKESRKIF-------GNVSPLVVAHRSV 753 (943)
Q Consensus 682 ksYTVY~IrV~sg~~eWtV~RRYSEF~eLHqrLke~Fp~~~L-~LP~p~~sVeK~PKKlF-------Gn~speFIEeRRk 753 (943)
+.|++|.|+| ..|+|.||||||.+||++|++.++.... +|| +|+++ ++++++|||+||+
T Consensus 17 ~~~~~Y~I~v----~~~~V~RRYsdF~~L~~~L~~~~~~~~P~~lP---------~K~~~~~~~~~~~~~~~~~ie~Rr~ 83 (117)
T 1kmd_A 17 PKYVLYGVST----PNKRLYKRYSEFWKLKTRLERDVGSTIPYDFP---------EKPGVLDRRWQRRYDDPEMIDERRI 83 (117)
T ss_dssp SSCEEEEEEC----SSCCEEECHHHHHHHHHHHHHHHCSCCCCCCC---------CCCCSSCSTTCCCTTCHHHHHHHHT
T ss_pred CCEEEEEEEE----ceEEEEechHHHHHHHHHHHHHcCccCCCCCC---------CCCEecccccccCCCCHHHHHHHHH
Confidence 4899999999 4899999999999999999999985443 677 58876 6799999999999
Q ss_pred HHHHHHHHHhccCCC--CCChhhhhccccccc
Q 002283 754 LIQECLQSILHSSSF--SSPPNALITFLSQQE 783 (943)
Q Consensus 754 aLE~YLQ~LLsh~~~--ls~SevL~eFLe~~~ 783 (943)
+||.||+.|+.|+.. +..+.+|..||+...
T Consensus 84 ~Le~yL~~l~~~p~l~~~~~s~~l~~FL~~~~ 115 (117)
T 1kmd_A 84 GLERFLNELYNDRFDSRWRDTKIAQDFLQLSK 115 (117)
T ss_dssp THHHHHHHHHCCSSCCHHHHSHHHHHHTTCCC
T ss_pred HHHHHHHHHHhCcchhhhhcCHHHHHhcCCCC
Confidence 999999999997532 356789999998764
No 14
>1kq6_A NCF-1, P47PHOX, neutrophil cytosol factor 1; alpha beta, PX domain, NADPH oxidase, protein binding; HET: MSE; 1.18A {Homo sapiens} SCOP: d.189.1.1 PDB: 1gd5_A 1o7k_A
Probab=99.69 E-value=3e-17 Score=156.13 Aligned_cols=108 Identities=19% Similarity=0.219 Sum_probs=87.8
Q ss_pred cccceEEEeccccccCCccccccccCccccEEEEEEEEE-CCceEEEEeecccHHHHHHHHHhhcccC---------CC-
Q 002283 655 LRIDGVEVIGAKQKKGDVSLSERLVGVKEYTVYKIRVWS-GKDQWEVERRYRDFYTLYRRLKSLSADE---------GW- 723 (943)
Q Consensus 655 lkId~VEVVgakqkkGdvS~servvGvksYTVY~IrV~s-g~~eWtV~RRYSEF~eLHqrLke~Fp~~---------~L- 723 (943)
..|..|.|++..++ + ....|++|.|+|+. ++..|+|+|||+||.+||++|++.||.. .+
T Consensus 4 ~~i~~v~V~~~ek~-~---------~~~~~~~Y~I~V~~~~~~~~~V~RRYsdF~~Lh~~L~~~fp~~~g~~~~~~~~lP 73 (141)
T 1kq6_A 4 TFIRHIALLGFEKR-F---------VPSQHYVYMFLVKWQDLSEKVVYRRFTEIYEFHKTLKEMFPIEAGAINPENRIIP 73 (141)
T ss_dssp SCEEEEEEEEEEEE-C---------SSSCEEEEEEEEEETTCCEEEEEECHHHHHHHHHHHHHHCTTTTTSSCGGGCCSC
T ss_pred ceEEEEEEccEEEe-c---------CCCCeEEEEEEEEEcCCCEEEEEecHHHHHHHHHHHHHHCchhhcccCccccccC
Confidence 45778888886543 2 12467789999997 4578999999999999999999999864 22
Q ss_pred CCCCCCcccccccccccCCCCHHHHHHHHHHHHHHHHHHhccCCCCCChhhhhccccccc
Q 002283 724 SLPSPWSSVEKESRKIFGNVSPLVVAHRSVLIQECLQSILHSSSFSSPPNALITFLSQQE 783 (943)
Q Consensus 724 ~LP~p~~sVeK~PKKlFGn~speFIEeRRkaLE~YLQ~LLsh~~~ls~SevL~eFLe~~~ 783 (943)
.|| +|+++++ .+|+++||++||.||+.|+.++..++.+++++.||+...
T Consensus 74 ~lP---------~K~~~~~--~~~~e~Rr~~Le~YL~~Ll~~p~~i~~s~~v~~Fl~~~~ 122 (141)
T 1kq6_A 74 HLP---------APKWFDG--QRAAENRQGTLTEYCSTLMSLPTKISRCPHLLDFFKVRP 122 (141)
T ss_dssp CCC---------CCCCCCS--HHHHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHSCCH
T ss_pred CCC---------CccccCC--HHHHHHHHHHHHHHHHHHHhCCHhhcCChHHHHHhCCCc
Confidence 566 4788885 899999999999999999997666778899999998863
No 15
>2iwl_X Phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing alpha polypeptide; PI3K, PX domain, transferase; 2.6A {Homo sapiens}
Probab=99.67 E-value=1.8e-17 Score=157.62 Aligned_cols=111 Identities=22% Similarity=0.262 Sum_probs=85.1
Q ss_pred CccccceEEEeccccccCCccccccccCccccEEEEEEEEECC--ceEEEEeecccHHHHHHHHHhhcccCC-CCCCCCC
Q 002283 653 VPLRIDGVEVIGAKQKKGDVSLSERLVGVKEYTVYKIRVWSGK--DQWEVERRYRDFYTLYRRLKSLSADEG-WSLPSPW 729 (943)
Q Consensus 653 ~~lkId~VEVVgakqkkGdvS~servvGvksYTVY~IrV~sg~--~eWtV~RRYSEF~eLHqrLke~Fp~~~-L~LP~p~ 729 (943)
....|..|.|.+..++.. + ..|++|.|+|+..+ ..|.|+|||+||.+||++|++.||... ++||
T Consensus 16 ~~~~i~~v~I~~~ek~~~---------~-~k~~~Y~I~V~~~~~~~~~~V~RRYseF~~Lh~~L~~~fp~~~lP~lP--- 82 (140)
T 2iwl_X 16 QDGRIKEVSVFTYHKKYN---------P-DKHYIYVVRILREGQIEPSFVFRTFDEFQELHNKLSIIFPLWKLPGFP--- 82 (140)
T ss_dssp HHCCEEEEEEEEEEECCS---------S-SSCEEEEEEEEETTCSSCEEEEECHHHHHHHHHHHHHHSCGGGSCCCC---
T ss_pred CCCeeEEEEECcEEEEec---------C-CCeEEEEEEEEECCCceeEEEEeEHHHHHHHHHHHHHHCcCccCCCCC---
Confidence 445688888888765421 2 35667999999865 489999999999999999999999864 3778
Q ss_pred cccccccccccCCC-CHHHHHHHHHHHHHHHHHHhccCCCCCChhhhhcccccc
Q 002283 730 SSVEKESRKIFGNV-SPLVVAHRSVLIQECLQSILHSSSFSSPPNALITFLSQQ 782 (943)
Q Consensus 730 ~sVeK~PKKlFGn~-speFIEeRRkaLE~YLQ~LLsh~~~ls~SevL~eFLe~~ 782 (943)
+|+++|+. +.+|+++||++||.||+.|+++++.++.++.++.||+..
T Consensus 83 ------~K~~~~~~~~~~~~e~Rr~~Le~yL~~Ll~~~~~i~~s~~v~~Fl~~~ 130 (140)
T 2iwl_X 83 ------NRMVLGRTHIKDVAAKRKIELNSYLQSLMNASTDVAECDLVCTFFHPL 130 (140)
T ss_dssp ------C----------CCCCHHHHHHHHHHHHHTTSCHHHHTSHHHHHHHSCC
T ss_pred ------CCeecCccchHHHHHHHHHHHHHHHHHHHhCCHhhhcCHHHHHHhCCC
Confidence 58889875 678999999999999999999767788899999999875
No 16
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*
Probab=99.62 E-value=2.3e-16 Score=170.56 Aligned_cols=107 Identities=21% Similarity=0.317 Sum_probs=78.6
Q ss_pred ceEEEeccccccCCccccccccCccccEEEEEEEEECCceEEEEeecccHHHHHHHHHhhccc-CCC-CCCCCCcccccc
Q 002283 658 DGVEVIGAKQKKGDVSLSERLVGVKEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSAD-EGW-SLPSPWSSVEKE 735 (943)
Q Consensus 658 d~VEVVgakqkkGdvS~servvGvksYTVY~IrV~sg~~eWtV~RRYSEF~eLHqrLke~Fp~-~~L-~LP~p~~sVeK~ 735 (943)
-.|.|..+.+..+ ..|.++||+|.|++++ ..|+|+||||||.+||++|.+.||. ..+ +||
T Consensus 21 ~~i~V~dp~k~~~-------~~g~~~y~~Y~I~~~~--~~~~V~RRYsdF~~L~~~L~~~~p~~~~iP~lP--------- 82 (366)
T 3dyt_A 21 FDCVVADPRKGSK-------MYGLKSYIEYQLTPTN--TNRSVNHRYKHFDWLYERLLVKFGSAIPIPSLP--------- 82 (366)
T ss_dssp CCEEEECGGGSSS-------CCCCCSSCEEEEEETT--CSCCEEEEHHHHHHHHHHHHHHHTTTSCCCCCC---------
T ss_pred eEEEEcCceeecC-------CCCCcCeEEEEEEEec--CcEEEEeeHHHHHHHHHHHHHhCCCcCcCCCCc---------
Confidence 3455666544321 2367899999998854 4899999999999999999999987 543 677
Q ss_pred cccccCCCCHHHHHHHHHHHHHHHHHHhccCCCCCChhhhhccccccc
Q 002283 736 SRKIFGNVSPLVVAHRSVLIQECLQSILHSSSFSSPPNALITFLSQQE 783 (943)
Q Consensus 736 PKKlFGn~speFIEeRRkaLE~YLQ~LLsh~~~ls~SevL~eFLe~~~ 783 (943)
||+++|+++++||++||++||.||+.|+.| |.+..++.|..||+.++
T Consensus 83 ~K~~~g~~~~~fie~Rr~~Le~fL~~i~~~-p~l~~~~~~~~FL~~~~ 129 (366)
T 3dyt_A 83 DKQVTGRFEEEFIKMRMERLQAWMTRMCRH-PVISESEVFQQFLNFRD 129 (366)
T ss_dssp -----------CHHHHHHHHHHHHHHHHTC-TTGGGSHHHHHHHHCSS
T ss_pred CCcccCCCCHHHHHHHHHHHHHHHHHHhCC-HhhhCCcHHHHhhCCCc
Confidence 699999999999999999999999999997 56778899999999864
No 17
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}
Probab=99.60 E-value=1.5e-16 Score=173.66 Aligned_cols=92 Identities=24% Similarity=0.302 Sum_probs=72.3
Q ss_pred CccccEEEEEEEEECCceEEEEeecccHHHHHHHHHhhcccCCC-CCCCCCcccccccccccCCCCHHHHHHHHHHHHHH
Q 002283 680 GVKEYTVYKIRVWSGKDQWEVERRYRDFYTLYRRLKSLSADEGW-SLPSPWSSVEKESRKIFGNVSPLVVAHRSVLIQEC 758 (943)
Q Consensus 680 GvksYTVY~IrV~sg~~eWtV~RRYSEF~eLHqrLke~Fp~~~L-~LP~p~~sVeK~PKKlFGn~speFIEeRRkaLE~Y 758 (943)
|.++||+|+|+++. ..|.|+||||||.+||++|.+.||...+ +|| ||+++|+++++||++||++||.|
T Consensus 57 g~~~y~~Y~I~~~~--~~~~V~RRYsdF~~L~~~L~~~~p~~~iP~lP---------~K~~~g~~~~~fie~Rr~~Le~f 125 (386)
T 4akv_A 57 GIKSYISYKLTPTH--AASPVYRRYKHFDWLYNRLLHKFTVISVPHLP---------EKQATGRFEEDFIEKRKRRLILW 125 (386)
T ss_dssp -----CCEEEEETT--SSSCEEECHHHHHHHHHHHHHHCSSSCCCCCC---------CCC------CCTTTHHHHHHHHH
T ss_pred CCcCeEEEEEEEEe--CCeEEEcCHHHHHHHHHHHHHhCCCCCCCCCC---------CCcccCCCCHHHHHHHHHHHHHH
Confidence 67899999999854 4799999999999999999999988654 577 69999999999999999999999
Q ss_pred HHHHhccCCCCCChhhhhccccccc
Q 002283 759 LQSILHSSSFSSPPNALITFLSQQE 783 (943)
Q Consensus 759 LQ~LLsh~~~ls~SevL~eFLe~~~ 783 (943)
|+.|+.| |.+..++.|..||+.++
T Consensus 126 L~~i~~~-p~l~~s~~~~~FL~~~~ 149 (386)
T 4akv_A 126 MDHMTSH-PVLSQYEGFQHFLSCLD 149 (386)
T ss_dssp HHHHHTC-TTGGGCHHHHHHHSCCC
T ss_pred HHHHhCC-HhhhCCcHHHHHhCCCC
Confidence 9999997 56788899999999863
No 18
>2l73_A NADPH oxidase organizer 1; cell membrane, PX domain, oxidoreductase regulator; NMR {Homo sapiens}
Probab=99.58 E-value=1.1e-15 Score=148.06 Aligned_cols=110 Identities=17% Similarity=0.149 Sum_probs=88.8
Q ss_pred ccceEEEeccccccCCccccccccCccccEEEEEEEEE-CCceEEEEeecccHHHHHHHHHhhcccCC----------CC
Q 002283 656 RIDGVEVIGAKQKKGDVSLSERLVGVKEYTVYKIRVWS-GKDQWEVERRYRDFYTLYRRLKSLSADEG----------WS 724 (943)
Q Consensus 656 kId~VEVVgakqkkGdvS~servvGvksYTVY~IrV~s-g~~eWtV~RRYSEF~eLHqrLke~Fp~~~----------L~ 724 (943)
.+.+|.|++..++ ..+.+.|++|.|+|.. ++..|+|+|||+||.+||++|++.||... ..
T Consensus 7 ~~~~v~v~~~ek~---------~~~~~~y~~Y~I~V~~~d~~~~~V~RRYseF~~Lh~~L~~~FP~e~~~~~~~~r~lP~ 77 (149)
T 2l73_A 7 AGPRYPVSVQGAA---------LVQIKRLQTFAFSVRWSDGSDTFVRRSWDEFRQLKKTLKETFPVEAGLLRRSDRVLPK 77 (149)
T ss_dssp CCCCCEEEEEEEE---------EECCSSSCEEEEEEEETTSCEEEEEEEHHHHHHHHHHHHHHCGGGGSSSCSSCCSSCC
T ss_pred ceeEEEEEeeeEe---------ecCCCceEEEEEEEEEeCCCEEEEEEehHHHHHHHHHHHHHCchhhcccccccccccC
Confidence 3556777765442 2356789999999986 46789999999999999999999998521 15
Q ss_pred CCCCCcccccccccccCC-CCHHHHHHHHHHHHHHHHHHhccCCCCCChhhhhccccccc
Q 002283 725 LPSPWSSVEKESRKIFGN-VSPLVVAHRSVLIQECLQSILHSSSFSSPPNALITFLSQQE 783 (943)
Q Consensus 725 LP~p~~sVeK~PKKlFGn-~speFIEeRRkaLE~YLQ~LLsh~~~ls~SevL~eFLe~~~ 783 (943)
|| +|++|++ .+.+++++||.+||.||+.|++.+..++.++.++.||....
T Consensus 78 lP---------~k~~~~~~~~~~~~e~R~~~Le~YL~~Ll~lp~~i~~s~~v~~Ff~~~~ 128 (149)
T 2l73_A 78 LL---------DAPLLGRVGRTSRGLARLQLLETYSRRLLATAERVARSPTITGFFAPQP 128 (149)
T ss_dssp CC---------CCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHCHHHHHSHHHHHHHSCCG
T ss_pred CC---------CCeeeccccchHHHHHHHHHHHHHHHHHHhCCccccCCHHHHHHhCCCc
Confidence 56 4788876 46899999999999999999997666778899999998874
No 19
>3hpc_X SNX5 protein; sprting nexin, PHOX, SNX5-PX, phosphatidylinositol, PI(4,5)P2, cell adhesion, protein transport; 1.47A {Rattus norvegicus} PDB: 3hpb_A
Probab=99.54 E-value=8.3e-15 Score=144.08 Aligned_cols=92 Identities=16% Similarity=0.154 Sum_probs=74.9
Q ss_pred ccEEEEEEEEEC-----CceEEEEeecccHHHHHHHHHh--hcccCCC-CCCCCCcccccccccccC-------------
Q 002283 683 EYTVYKIRVWSG-----KDQWEVERRYRDFYTLYRRLKS--LSADEGW-SLPSPWSSVEKESRKIFG------------- 741 (943)
Q Consensus 683 sYTVY~IrV~sg-----~~eWtV~RRYSEF~eLHqrLke--~Fp~~~L-~LP~p~~sVeK~PKKlFG------------- 741 (943)
.|++|.|++++. ...|.|.|||+||.|||++|.+ .||...+ +|| +|++++
T Consensus 24 ~~v~Y~I~t~t~~p~f~~~~~~V~RRysdF~~L~~~L~~~~~~p~~iiPplP---------~K~~~~~~~~K~~~~g~~~ 94 (161)
T 3hpc_X 24 DKVKFTVHTKTTLPTFQSPEFSVTRQHEDFVWLHDTLTETTDYAGLIIPPAP---------TKPDFDGPREKMQKLGEGE 94 (161)
T ss_dssp TEEEEEEEEEECCTTSSSSEEEEEECHHHHHHHHHHHHHCGGGTTSCCCCCC---------CCCCCHHHHHHHHHHHHTG
T ss_pred CCEEEEEEEEeCCcccCCCcceEEecHHHHHHHHHHHHhhccCCccccCCCC---------Ccccccchhhhhhcccccc
Confidence 499999999874 4689999999999999999998 6777653 666 466653
Q ss_pred -C------------CCHHHHHHHH---HHHHHHHHHHhccCCCCCChhhhhcccccccc
Q 002283 742 -N------------VSPLVVAHRS---VLIQECLQSILHSSSFSSPPNALITFLSQQES 784 (943)
Q Consensus 742 -n------------~speFIEeRR---kaLE~YLQ~LLsh~~~ls~SevL~eFLe~~~s 784 (943)
+ ++++|||+|| ++||.||++|+.| |.+..++.|+.||+..+.
T Consensus 95 ~~~~~e~~~~~r~~~~~efie~Rrkrr~~Le~FL~ri~~H-P~L~~d~~~~~FL~~~~d 152 (161)
T 3hpc_X 95 GSMTKEEFAKMKQELEAEYLAVFKKTVSSHEVFLQRLSSH-PVLSKDRNFHVFLEYDQD 152 (161)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS-TTGGGCHHHHHHHHCCSC
T ss_pred cccchhHhhhhcccccHHHHHHHHHHHHHHHHHHHHHHcC-CCcccCcHHHhhcCCCcc
Confidence 2 3568999754 4599999999997 577888999999998853
No 20
>2v6v_A BUD emergence protein 1; homotypic fusion, regulator, PI3P, 3-kinase, PX domain, SH3 domain, cytoskeleton, cell polarity; 1.5A {Saccharomyces cerevisiae} PDB: 2czo_A
Probab=99.53 E-value=1.3e-14 Score=141.62 Aligned_cols=92 Identities=13% Similarity=0.154 Sum_probs=74.1
Q ss_pred ccEEEEEEEEE-CCceEEEEeecccHHHHHHHHHhhcccCC------------CCCCCCCcccccccccccCCCCHHHHH
Q 002283 683 EYTVYKIRVWS-GKDQWEVERRYRDFYTLYRRLKSLSADEG------------WSLPSPWSSVEKESRKIFGNVSPLVVA 749 (943)
Q Consensus 683 sYTVY~IrV~s-g~~eWtV~RRYSEF~eLHqrLke~Fp~~~------------L~LP~p~~sVeK~PKKlFGn~speFIE 749 (943)
.+++|.|+|.. ++..|+|+|||+||.+||.+|++.||... ..||..| +|++++ +.+|++
T Consensus 31 ~~y~Y~I~V~~~d~~~~~V~RRYsdF~~Lh~~L~~~fP~e~g~~~~~~g~~~~~~lP~LP------~K~~~~--~~~~~e 102 (156)
T 2v6v_A 31 EKYWFLVCCELSNGKTRQLKRYYQDFYDLQVQLLDAFPAEAGKLRDAGGQWSKRIMPYIP------GPVPYV--TNSITK 102 (156)
T ss_dssp TEEEEEEEEEETTSCEEEEEECHHHHHHHHHHHHHHCTTTTTCCBCTTCCBCCCCSCCCC------CCCSSC--CHHHHH
T ss_pred CEEEEEEEEEEcCCCEEEEEEEhHHHHHHHHHHHHHcchhhcccccccccccccccCCCC------CCcccC--CHHHHH
Confidence 35669999998 46799999999999999999999997521 2233211 244443 679999
Q ss_pred HHHHHHHHHHHHHhccCCCCCChhhhhcccccc
Q 002283 750 HRSVLIQECLQSILHSSSFSSPPNALITFLSQQ 782 (943)
Q Consensus 750 eRRkaLE~YLQ~LLsh~~~ls~SevL~eFLe~~ 782 (943)
+||.+|+.||+.|+..++.++.++.|+.||...
T Consensus 103 ~Rr~~Le~YL~~Ll~lp~~i~~s~~v~~Ff~~~ 135 (156)
T 2v6v_A 103 KRKEDLNIYVADLVNLPDYISRSEMVHSLFVVL 135 (156)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHTSHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHhCCccccCCHHHHHHhCCC
Confidence 999999999999999766788889999999886
No 21
>2wwe_A Phosphoinositide-3-kinase, class 2, gamma polypeptide; phosphoprotein, nucleotide-binding, PIK3C2G, membrane, PX-domain, transferase, ATP-binding; 1.25A {Homo sapiens}
Probab=99.38 E-value=3.2e-13 Score=128.99 Aligned_cols=106 Identities=16% Similarity=0.211 Sum_probs=84.5
Q ss_pred CCCccccceEEEeccccccCCccccccccCccccEEEEEEEEEC-CceEEEEeecccHHHHHHHHHhhcccCC-CCCCCC
Q 002283 651 TLVPLRIDGVEVIGAKQKKGDVSLSERLVGVKEYTVYKIRVWSG-KDQWEVERRYRDFYTLYRRLKSLSADEG-WSLPSP 728 (943)
Q Consensus 651 ~~~~lkId~VEVVgakqkkGdvS~servvGvksYTVY~IrV~sg-~~eWtV~RRYSEF~eLHqrLke~Fp~~~-L~LP~p 728 (943)
+.....|.++.|++-.++ ..+.|.|+|... +..|.|.|||++|.+||++|++.||... +.||
T Consensus 19 ~~~~~~i~~~~v~~~~k~--------------~~~~Yvi~V~~sd~~~~~~~rry~eF~~LH~qLkk~Fp~~~LP~fP-- 82 (127)
T 2wwe_A 19 YFQSMSIERATILGFSKK--------------SSNLYLIQVTHSNNETSLTEKSFEQFSKLHSQLQKQFASLTLPEFP-- 82 (127)
T ss_dssp CSCSSSEEEEEEEEEETT--------------EEEEEEEEEEETTSCEEEEEECHHHHHHHHHHHHHHTTTSCCCCCC--
T ss_pred eecCCcEEEEEEEEEEec--------------ccEEEEEEEEEeCCCeEEEEEEHHHHHHHHHHHHHhCccccCCCCC--
Confidence 445556778888876432 335599999885 5799999999999999999999999964 3666
Q ss_pred CcccccccccccCCCCHHHHHHHHHHHHHHHHHHhccCCCCCChhhhhccccc
Q 002283 729 WSSVEKESRKIFGNVSPLVVAHRSVLIQECLQSILHSSSFSSPPNALITFLSQ 781 (943)
Q Consensus 729 ~~sVeK~PKKlFGn~speFIEeRRkaLE~YLQ~LLsh~~~ls~SevL~eFLe~ 781 (943)
+|++++. ...-++ ||++||.||+.|++.++.++.|+.|..||..
T Consensus 83 -------~K~ll~~-t~~~~e-Rr~~Le~Ylq~Ll~~~~~Ia~Sd~v~~Ff~~ 126 (127)
T 2wwe_A 83 -------HWWHLPF-TNSDHR-RFRDLNHYMEQILNVSHEVTNSDCVLSFFLS 126 (127)
T ss_dssp -------CTTSHHH-HHCHHH-HHHHHHHHHHHHTTSCHHHHTSHHHHHHHHC
T ss_pred -------CccccCc-CHHHHH-HHHHHHHHHHHHhcCCceeecCHHHHHHhCC
Confidence 4776654 334455 9999999999999977888999999999864
No 22
>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens}
Probab=99.36 E-value=4.8e-13 Score=143.01 Aligned_cols=91 Identities=21% Similarity=0.320 Sum_probs=77.0
Q ss_pred cccEEEEEEEEE-CCceEEEEeecccHHHHHHHHHhhcccCC---------CCCCCCCcccccccccccCCCCHHHHHHH
Q 002283 682 KEYTVYKIRVWS-GKDQWEVERRYRDFYTLYRRLKSLSADEG---------WSLPSPWSSVEKESRKIFGNVSPLVVAHR 751 (943)
Q Consensus 682 ksYTVY~IrV~s-g~~eWtV~RRYSEF~eLHqrLke~Fp~~~---------L~LP~p~~sVeK~PKKlFGn~speFIEeR 751 (943)
..|++|.|+|+. ++..|+|+|||+||.+||++|++.||... ..|| +|+++++ ..+|+++|
T Consensus 38 ~~~~~Y~i~v~~~~~~~~~v~RrYsdF~~Lh~~L~~~fp~e~g~~~~~~~lp~lP---------~k~~~~~-~~~~~e~R 107 (341)
T 2dyb_A 38 TSHFVFVIEVKTKGGSKYLIYRRYRQFHALQSKLEERFGPDSKSSALAXTLPTLP---------AKVYVGV-KQEIAEMR 107 (341)
T ss_dssp SEEEEEEEEEEETTSCEEEEEEEHHHHHHHHHHHHHHTCC---------CCCCCC---------CCCCCSC-HHHHHHHH
T ss_pred CcEEEEEEEEEEcCCcEEEEEeehHHHHHHHHHHHHHCchhhccccccccccCCC---------CccccCc-cHHHHHHH
Confidence 468999999985 56789999999999999999999998533 2556 4787877 67899999
Q ss_pred HHHHHHHHHHHhccCCCCCChhhhhcccccc
Q 002283 752 SVLIQECLQSILHSSSFSSPPNALITFLSQQ 782 (943)
Q Consensus 752 RkaLE~YLQ~LLsh~~~ls~SevL~eFLe~~ 782 (943)
|+.|+.||+.|+.++..+..++.++.||...
T Consensus 108 ~~~Le~yl~~ll~lp~~i~~~~~v~~Ff~~~ 138 (341)
T 2dyb_A 108 IPALNAYMKSLLSLPVWVLMDEDVRIFFYQS 138 (341)
T ss_dssp HHHHHHHHHHHHHSCHHHHTCHHHHHHHSCC
T ss_pred HHHHHHHHHHHHhcCchhhhhHHHHHHHhhc
Confidence 9999999999999776577788999999765
No 23
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.33 E-value=12 Score=32.03 Aligned_cols=39 Identities=13% Similarity=0.382 Sum_probs=26.9
Q ss_pred hHHhhcccccccccccccccCcchhhhhhhccccCCcccc--cccceeecCCCCCCC
Q 002283 830 KQMLESQHYTCAGCHKHFDDGITLMQDFVQTLGWGKPRLC--EYTGQLFCSTCHTNE 884 (943)
Q Consensus 830 eqgL~sQ~yrCAgC~~~Ii~Gl~sLRd~LktLtv~k~RlC--~YtG~YYCs~CH~Nd 884 (943)
.+.+=...++|+.|+..|..+ .++ ...|++||..|+...
T Consensus 35 ~~~wH~~CF~C~~C~~~L~~~----------------~~~~~~~~g~~yC~~~y~~~ 75 (82)
T 2co8_A 35 GHFFHRSCFRCHTCEATLWPG----------------GYEQHPGDGHFYCLQHLPQT 75 (82)
T ss_dssp TBCCBTTTCBCSSSCCBCCTT----------------SEECCTTTCCCEETTTCCCC
T ss_pred CCeeCCCcCEEcCCCCCcCCC----------------ceeEeCcCCEEEChHHHHhh
Confidence 344556789999998877422 233 247999999988653
No 24
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.37 E-value=23 Score=29.51 Aligned_cols=37 Identities=19% Similarity=0.565 Sum_probs=25.8
Q ss_pred HhhcccccccccccccccCcchhhhhhhccccCCcccccccceeecCCCCCCC
Q 002283 832 MLESQHYTCAGCHKHFDDGITLMQDFVQTLGWGKPRLCEYTGQLFCSTCHTNE 884 (943)
Q Consensus 832 gL~sQ~yrCAgC~~~Ii~Gl~sLRd~LktLtv~k~RlC~YtG~YYCs~CH~Nd 884 (943)
.+-.+.++|+.|+.+|. + ..+....|++||..|+...
T Consensus 30 ~wH~~CF~C~~C~~~L~-~---------------~~f~~~~g~~yC~~cy~~~ 66 (76)
T 1x68_A 30 QWHSECFNCGKCSVSLV-G---------------KGFLTQNKEIFCQKCGSGM 66 (76)
T ss_dssp EEEGGGCBCTTTCCBCS-S---------------SCEEEETTEEEETTTTCCC
T ss_pred ccCcccCChhhCCCcCC-C---------------CceEeECCEEECHHHhhhh
Confidence 34457889999988764 1 1233457899999998763
No 25
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.40 E-value=8.9 Score=31.41 Aligned_cols=35 Identities=20% Similarity=0.622 Sum_probs=20.4
Q ss_pred hhcccccccccccccccCcchhhhhhhccccCCcccccccceeecCCCCCC
Q 002283 833 LESQHYTCAGCHKHFDDGITLMQDFVQTLGWGKPRLCEYTGQLFCSTCHTN 883 (943)
Q Consensus 833 L~sQ~yrCAgC~~~Ii~Gl~sLRd~LktLtv~k~RlC~YtG~YYCs~CH~N 883 (943)
+-...++|+.|+.+|..+ .+....|.+||..|+..
T Consensus 27 ~H~~CF~C~~C~~~L~~~----------------~f~~~~g~~yC~~c~~~ 61 (70)
T 2d8x_A 27 WHPECFRCDLCQEVLADI----------------GFVKNAGRHLCRPCHNR 61 (70)
T ss_dssp ECTTTSBCSSSCCBCSSS----------------CCEEETTEEECHHHHHH
T ss_pred ccccCCEeCCCCCcCCCC----------------ccEeECCeEECHHHhhh
Confidence 444667777777766321 12223677787777644
No 26
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.01 E-value=13 Score=31.12 Aligned_cols=39 Identities=13% Similarity=0.398 Sum_probs=24.7
Q ss_pred hhcccccccccccccccCcchhhhhhhccccCCcccccccceeecCCCCCCCcc
Q 002283 833 LESQHYTCAGCHKHFDDGITLMQDFVQTLGWGKPRLCEYTGQLFCSTCHTNETA 886 (943)
Q Consensus 833 L~sQ~yrCAgC~~~Ii~Gl~sLRd~LktLtv~k~RlC~YtG~YYCs~CH~Ndts 886 (943)
+=.+.++|+.|+.+|..|. .+....+.+||..|+....+
T Consensus 27 wH~~CF~C~~C~~~L~~~~---------------~f~~~~~~~yC~~C~~~~~~ 65 (73)
T 1wig_A 27 YHPSCALCVRCGQMFAEGE---------------EMYLQGSSIWHPACRQAART 65 (73)
T ss_dssp BCTTTSCCSSSCCCCCSSC---------------CCEEETTEEECTTHHHHTSS
T ss_pred CCCCcCEeCCCCCCCCCCC---------------eeEeeCCEEEChHHChHhhc
Confidence 4456788888888764221 22233678899988865433
No 27
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=32.30 E-value=9.7 Score=32.86 Aligned_cols=37 Identities=19% Similarity=0.509 Sum_probs=24.3
Q ss_pred hHHhhcccccccccccccccCcchhhhhhhccccCCcccccccceeecCCCCC
Q 002283 830 KQMLESQHYTCAGCHKHFDDGITLMQDFVQTLGWGKPRLCEYTGQLFCSTCHT 882 (943)
Q Consensus 830 eqgL~sQ~yrCAgC~~~Ii~Gl~sLRd~LktLtv~k~RlC~YtG~YYCs~CH~ 882 (943)
.+.+-.+.++|+.|+..|..+ .+....|.+||..|+.
T Consensus 44 ~~~~H~~CF~C~~C~~~L~~~----------------~~~~~~g~~yC~~~y~ 80 (89)
T 1x64_A 44 DKYRHPECFVCADCNLNLKQK----------------GYFFVEGELYCETHAR 80 (89)
T ss_dssp SCEECTTTCCCSSSCCCTTTS----------------CCEEETTEEECHHHHH
T ss_pred CceECccCCEecCCCCCCCCC----------------CeEeECCEEECHHHHH
Confidence 345566788899998876421 1223478888887764
No 28
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.52 E-value=12 Score=31.86 Aligned_cols=41 Identities=29% Similarity=0.699 Sum_probs=25.3
Q ss_pred HhhcccccccccccccccCcchhhhhhhccccCCcccccccceeecCCCCCCCcccCC
Q 002283 832 MLESQHYTCAGCHKHFDDGITLMQDFVQTLGWGKPRLCEYTGQLFCSTCHTNETAVLP 889 (943)
Q Consensus 832 gL~sQ~yrCAgC~~~Ii~Gl~sLRd~LktLtv~k~RlC~YtG~YYCs~CH~NdtsVIP 889 (943)
.+-...++|+.|+.+|..+ .+ ...|.+||..|+....+.+|
T Consensus 36 ~~H~~CF~C~~C~~~L~~~----------------~f-~~~g~~yC~~cy~~~f~p~~ 76 (79)
T 2cor_A 36 PYHPDHFNCANCGKELTAD----------------AR-ELKGELYCLPCHDKMGVSGP 76 (79)
T ss_dssp CCCTTTSBCSSSCCBCCTT----------------CE-EETTEEECHHHHHTTSCCSS
T ss_pred eeCCCCCEeCCCCCccCCC----------------CE-eECCEEeCHHHHHHhCCCCC
Confidence 3445677888887766311 12 34788888888766544444
No 29
>1ogy_B Diheme cytochrome C NAPB molecule: nitrate reductase; oxidoreductase; HET: MGD HEC; 3.2A {Rhodobacter sphaeroides} SCOP: a.138.1.3
Probab=30.92 E-value=22 Score=34.61 Aligned_cols=18 Identities=33% Similarity=0.885 Sum_probs=13.7
Q ss_pred cceeecCCCCCCCcccCC
Q 002283 872 TGQLFCSTCHTNETAVLP 889 (943)
Q Consensus 872 tG~YYCs~CH~NdtsVIP 889 (943)
-.+|+|..||.....+=|
T Consensus 93 p~RYfCtQCHVpQada~P 110 (130)
T 1ogy_B 93 PRRYFCTACHVPQTNAQP 110 (130)
T ss_dssp STTCCGGGTCCBCBCCCC
T ss_pred ccceecccccCccccCcc
Confidence 347899999999666545
No 30
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=30.91 E-value=10 Score=40.92 Aligned_cols=41 Identities=15% Similarity=0.326 Sum_probs=0.0
Q ss_pred ccccccccccccCcchhhhhhhccccCCcccccccceeecCCCCCC
Q 002283 838 YTCAGCHKHFDDGITLMQDFVQTLGWGKPRLCEYTGQLFCSTCHTN 883 (943)
Q Consensus 838 yrCAgC~~~Ii~Gl~sLRd~LktLtv~k~RlC~YtG~YYCs~CH~N 883 (943)
-+|.|||+.|..--.....|+-.- .+..-.+.++|..||.-
T Consensus 5 ~~C~gcG~~lq~~~~~~~gy~p~~-----~~~~~~~~~~C~RC~~l 45 (369)
T 3ec1_A 5 LRCIGCGAAIQFENPKNAGYAPKS-----VLEKDAEEVICQRCFRL 45 (369)
T ss_dssp ----------------------------------------------
T ss_pred ceeCCCCceeecCCCCCCCCCChH-----HhcCCCCCEEchhHHHh
Confidence 469999998854323333443211 11111447999999873
No 31
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=29.83 E-value=10 Score=30.72 Aligned_cols=16 Identities=31% Similarity=0.841 Sum_probs=10.0
Q ss_pred hhcccccccccccccc
Q 002283 833 LESQHYTCAGCHKHFD 848 (943)
Q Consensus 833 L~sQ~yrCAgC~~~Ii 848 (943)
+-...++|+.|+.+|.
T Consensus 35 ~H~~CF~C~~C~~~L~ 50 (72)
T 3f6q_B 35 YHEQCFVCAQCFQQFP 50 (72)
T ss_dssp EETTTSSCTTTCCCCG
T ss_pred eCcCCCcccCCCCCCC
Confidence 4445677777776653
No 32
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.92 E-value=43 Score=29.30 Aligned_cols=65 Identities=22% Similarity=0.354 Sum_probs=41.8
Q ss_pred ccccccccccccccCcchhhhhhhccccCCcccccccceeecCCCCCCCcccCCCceEEe--ecCCCCccchhHHHHHHH
Q 002283 836 QHYTCAGCHKHFDDGITLMQDFVQTLGWGKPRLCEYTGQLFCSTCHTNETAVLPARVLHH--WDFTRYPVSQLAKSFLDS 913 (943)
Q Consensus 836 Q~yrCAgC~~~Ii~Gl~sLRd~LktLtv~k~RlC~YtG~YYCs~CH~NdtsVIPARVLhn--WDFS~npVSqiAks~L~~ 913 (943)
....|..|++++. + +..-+-|...|..||..|-... ..||..-... -...+..||+.-+..|..
T Consensus 13 ~~~~C~~C~~~F~--~-----------~~RrHHCR~CG~vfC~~Cs~~~-~~l~~~g~~~p~~~~~~~RVC~~C~~~l~~ 78 (84)
T 1x4u_A 13 NFGNCTGCSATFS--V-----------LKKRRSCSNCGNSFCSRCCSFK-VPKSSMGATAPEAQRETVFVCASCNQTLSK 78 (84)
T ss_dssp CCSSCSSSCCCCC--S-----------SSCCEECSSSCCEECTTTSCEE-ECSTTTSCCCSSCSSCCEEECHHHHHHHHS
T ss_pred CCCcCcCcCCccc--c-----------chhhhhhcCCCcEEChhhcCCc-eecccccccCccccCCccEECHHHHHHHhc
Confidence 4457999998872 1 1233789999999999996553 4455321110 013567789888887765
Q ss_pred h
Q 002283 914 V 914 (943)
Q Consensus 914 I 914 (943)
.
T Consensus 79 ~ 79 (84)
T 1x4u_A 79 S 79 (84)
T ss_dssp C
T ss_pred c
Confidence 3
No 33
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.84 E-value=14 Score=31.95 Aligned_cols=36 Identities=22% Similarity=0.594 Sum_probs=21.5
Q ss_pred HHhhcccccccccccccccCcchhhhhhhccccCCcccccccceeecCCCCC
Q 002283 831 QMLESQHYTCAGCHKHFDDGITLMQDFVQTLGWGKPRLCEYTGQLFCSTCHT 882 (943)
Q Consensus 831 qgL~sQ~yrCAgC~~~Ii~Gl~sLRd~LktLtv~k~RlC~YtG~YYCs~CH~ 882 (943)
+.+=...++|+.|+.+|... .+....|.+||..|+.
T Consensus 45 ~~~H~~CF~C~~C~~~L~~~----------------~f~~~~g~~yC~~cy~ 80 (90)
T 2dar_A 45 KSWHPEEFNCAHCKNTMAYI----------------GFVEEKGALYCELCYE 80 (90)
T ss_dssp EEECTTTCBCSSSCCBCSSS----------------CBEESSSCEECHHHHH
T ss_pred ccccccCCccCCCCCCCCCC----------------EeEeECCEEECHHHHH
Confidence 44555677888887766311 1223467778776654
No 34
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.68 E-value=34 Score=28.70 Aligned_cols=35 Identities=17% Similarity=0.601 Sum_probs=22.8
Q ss_pred hhcccccccccccccccCcchhhhhhhccccCCcccccccceeecCCCCCC
Q 002283 833 LESQHYTCAGCHKHFDDGITLMQDFVQTLGWGKPRLCEYTGQLFCSTCHTN 883 (943)
Q Consensus 833 L~sQ~yrCAgC~~~Ii~Gl~sLRd~LktLtv~k~RlC~YtG~YYCs~CH~N 883 (943)
+=.+.++|+.|+.+|... .+....+.+||..|+..
T Consensus 39 ~H~~CF~C~~C~~~L~~~----------------~f~~~~~~~~C~~c~~~ 73 (82)
T 2ehe_A 39 FHEGCFRCCRCQRSLADE----------------PFTCQDSELLCNDCYCS 73 (82)
T ss_dssp CBTTTSBCTTTCCBCSSC----------------CEEEETTEEEETTTSSC
T ss_pred ccccCCeecCCCCccCCC----------------ccEeeCCEEECHHHHhh
Confidence 444678888888776411 22334688899888865
No 35
>1jni_A NAPB;, diheme cytochrome C NAPB; dihaem cytochrome C, proteolytic fragment, nitrate reductase subunit, oxidoreductase; HET: HEM; 1.25A {Haemophilus influenzae} SCOP: a.138.1.3
Probab=26.23 E-value=17 Score=35.06 Aligned_cols=17 Identities=35% Similarity=0.868 Sum_probs=9.6
Q ss_pred ceeecCCCCCCCcccCC
Q 002283 873 GQLFCSTCHTNETAVLP 889 (943)
Q Consensus 873 G~YYCs~CH~NdtsVIP 889 (943)
.+|+|..||.....+=|
T Consensus 93 ~Ry~CtqCHVPQ~~~~P 109 (123)
T 1jni_A 93 RRYFCLQCHVSQANVDP 109 (123)
T ss_dssp CSCCGGGTCCC------
T ss_pred cceecccccCCcccccc
Confidence 35999999998766644
No 36
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=25.78 E-value=15 Score=29.67 Aligned_cols=15 Identities=40% Similarity=1.006 Sum_probs=9.1
Q ss_pred hhccccccccccccc
Q 002283 833 LESQHYTCAGCHKHF 847 (943)
Q Consensus 833 L~sQ~yrCAgC~~~I 847 (943)
+=.+.++|+.|+.+|
T Consensus 27 ~H~~CF~C~~C~~~L 41 (66)
T 1nyp_A 27 WHVEHFVCAKCEKPF 41 (66)
T ss_dssp EETTTCBCTTTCCBC
T ss_pred cccCcCEECCCCCCC
Confidence 444566677776655
No 37
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.70 E-value=13 Score=30.75 Aligned_cols=13 Identities=38% Similarity=1.042 Sum_probs=8.1
Q ss_pred ccccccccccccc
Q 002283 835 SQHYTCAGCHKHF 847 (943)
Q Consensus 835 sQ~yrCAgC~~~I 847 (943)
...++|+.|+.+|
T Consensus 37 ~~CF~C~~C~~~L 49 (77)
T 1g47_A 37 EQCFVCAQCFQQF 49 (77)
T ss_dssp TTTCCCTTTCCCC
T ss_pred cccCeECCCCCCC
Confidence 3566677776655
No 38
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.29 E-value=17 Score=29.90 Aligned_cols=35 Identities=11% Similarity=0.473 Sum_probs=19.7
Q ss_pred hhcccccccccccccccCcchhhhhhhccccCCcccccccceeecCCCCCC
Q 002283 833 LESQHYTCAGCHKHFDDGITLMQDFVQTLGWGKPRLCEYTGQLFCSTCHTN 883 (943)
Q Consensus 833 L~sQ~yrCAgC~~~Ii~Gl~sLRd~LktLtv~k~RlC~YtG~YYCs~CH~N 883 (943)
+=.+.++|+.|+.+|... .+....|.+||..|+..
T Consensus 31 wH~~CF~C~~C~~~L~~~----------------~f~~~~g~~yC~~c~~~ 65 (72)
T 1x4l_A 31 WHNDCFNCKKCSLSLVGR----------------GFLTERDDILCPDCGKD 65 (72)
T ss_dssp ECTTTCBCSSSCCBCTTS----------------CCEECSSSEECHHHHHT
T ss_pred cCcccCEeccCCCcCCCC----------------ccEeECCEEEChhHcCc
Confidence 334567777777665310 12234677777776644
No 39
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.76 E-value=18 Score=29.64 Aligned_cols=13 Identities=15% Similarity=0.723 Sum_probs=7.1
Q ss_pred ccccccccccccc
Q 002283 835 SQHYTCAGCHKHF 847 (943)
Q Consensus 835 sQ~yrCAgC~~~I 847 (943)
...++|+.|+.+|
T Consensus 31 ~~CF~C~~C~~~L 43 (72)
T 1x61_A 31 VGCFVCSTCRAQL 43 (72)
T ss_dssp TTTCBCSSSCCBC
T ss_pred ccCCcccccCCcC
Confidence 3455566665554
No 40
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=22.43 E-value=34 Score=29.23 Aligned_cols=60 Identities=20% Similarity=0.416 Sum_probs=41.1
Q ss_pred ccccccccccccCcchhhhhhhccccCCcccccccceeecCCCCCCCcccCCCceEEeecCCCCccchhHHHHHHHhh
Q 002283 838 YTCAGCHKHFDDGITLMQDFVQTLGWGKPRLCEYTGQLFCSTCHTNETAVLPARVLHHWDFTRYPVSQLAKSFLDSVY 915 (943)
Q Consensus 838 yrCAgC~~~Ii~Gl~sLRd~LktLtv~k~RlC~YtG~YYCs~CH~NdtsVIPARVLhnWDFS~npVSqiAks~L~~I~ 915 (943)
..|..|++++. + +..-+-|...|..||..|-... ..||..-. ..+..||+.-+..|+.|.
T Consensus 12 ~~C~~C~~~F~--~-----------~~RrHHCR~CG~v~C~~Cs~~~-~~lp~~~~----~~~~RVC~~C~~~l~~i~ 71 (73)
T 1vfy_A 12 DACMICSKKFS--L-----------LNRKHHCRSCGGVFCQEHSSNS-IPLPDLGI----YEPVRVCDSCFEDYEFIV 71 (73)
T ss_dssp SBCTTTCCBCB--T-----------TBCCEECTTTCCEECGGGSCEE-EEEGGGTE----EEEEEECHHHHHHHHHHH
T ss_pred CcccCCCCccC--C-----------ccccccCCCCCEEEcccccCCe-EEcccCCC----CCCCEECHHHHHHHHHHh
Confidence 47999998763 1 1233789999999999997553 34453211 245688998888887764
No 41
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.68 E-value=20 Score=29.15 Aligned_cols=15 Identities=20% Similarity=0.809 Sum_probs=8.7
Q ss_pred hhccccccccccccc
Q 002283 833 LESQHYTCAGCHKHF 847 (943)
Q Consensus 833 L~sQ~yrCAgC~~~I 847 (943)
+-.+.++|+.|+.+|
T Consensus 27 ~H~~CF~C~~C~~~L 41 (70)
T 2d8z_A 27 WHKECFVCTACRKQL 41 (70)
T ss_dssp EETTTSBCSSSCCBC
T ss_pred cCCCCCccCCCCCcC
Confidence 334566666666655
No 42
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.63 E-value=30 Score=29.48 Aligned_cols=35 Identities=14% Similarity=0.404 Sum_probs=22.4
Q ss_pred HHhhcccccccccccccccCcchhhhhhhccccCCcccccccceeecCCCCC
Q 002283 831 QMLESQHYTCAGCHKHFDDGITLMQDFVQTLGWGKPRLCEYTGQLFCSTCHT 882 (943)
Q Consensus 831 qgL~sQ~yrCAgC~~~Ii~Gl~sLRd~LktLtv~k~RlC~YtG~YYCs~CH~ 882 (943)
+.+=.+.++|+.|+.+|. + .+....|.+||..|+.
T Consensus 36 ~~wH~~CF~C~~C~~~L~-~----------------~~~~~~g~~yC~~~y~ 70 (80)
T 2dj7_A 36 KQWHVSCFKCQTCSVILT-G----------------EYISKDGVPYCESDYH 70 (80)
T ss_dssp EEECTTTCBCSSSCCBCS-S----------------CCEEETTEEECTTHHH
T ss_pred cccccccCCcCcCCCCcC-C----------------CeEEECCEEECHHHHH
Confidence 345557788888887663 2 1223468888887764
No 43
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=21.60 E-value=20 Score=38.84 Aligned_cols=38 Identities=18% Similarity=0.425 Sum_probs=0.0
Q ss_pred ccccccccccccCcchhhhhhhccccCCcccccccceeecCCCCC
Q 002283 838 YTCAGCHKHFDDGITLMQDFVQTLGWGKPRLCEYTGQLFCSTCHT 882 (943)
Q Consensus 838 yrCAgC~~~Ii~Gl~sLRd~LktLtv~k~RlC~YtG~YYCs~CH~ 882 (943)
-+|.|||+.|..--.....|+..- .+. .+..+|..||.
T Consensus 5 ~~C~gcG~~lq~~~~~~~gy~p~~-----~~~--~~~~~C~Rc~~ 42 (368)
T 3h2y_A 5 IKCIGCGVEIQTEDKNEVGYAPAS-----SLE--KEQVICQRCFR 42 (368)
T ss_dssp ---------------------------------------------
T ss_pred ceeCCCcceeEcCCCCCCCCCChH-----Hcc--CCCcEEhhhhh
Confidence 369999998854323333343211 111 35799999985
No 44
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=21.60 E-value=22 Score=29.95 Aligned_cols=15 Identities=20% Similarity=0.629 Sum_probs=9.2
Q ss_pred hhccccccccccccc
Q 002283 833 LESQHYTCAGCHKHF 847 (943)
Q Consensus 833 L~sQ~yrCAgC~~~I 847 (943)
+-...++|+.|+.+|
T Consensus 30 ~H~~CF~C~~C~~~L 44 (81)
T 1a7i_A 30 FHRCCFLCMVCRKNL 44 (81)
T ss_dssp EESSSEECSSSCCEE
T ss_pred cccccCccCCCCCCC
Confidence 444566677776655
No 45
>3ml1_B NAPB, diheme cytochrome C NAPB; heterodimer, oxidoreductase; HET: MGD HEC; 1.60A {Ralstonia eutropha} PDB: 3o5a_B*
Probab=21.33 E-value=17 Score=35.62 Aligned_cols=16 Identities=31% Similarity=0.949 Sum_probs=13.2
Q ss_pred eeecCCCCCCCcccCC
Q 002283 874 QLFCSTCHTNETAVLP 889 (943)
Q Consensus 874 ~YYCs~CH~NdtsVIP 889 (943)
+|||..||.....+=|
T Consensus 96 RYfCtQCHVPQada~P 111 (135)
T 3ml1_B 96 RYFCTQCHVPQADTKP 111 (135)
T ss_dssp HHSGGGTCCBCBSSCC
T ss_pred ceeeccccCccccCcc
Confidence 6899999999776655
No 46
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=21.01 E-value=12 Score=31.53 Aligned_cols=35 Identities=14% Similarity=0.409 Sum_probs=20.7
Q ss_pred HhhcccccccccccccccCcchhhhhhhccccCCcccccccceeecCCCCC
Q 002283 832 MLESQHYTCAGCHKHFDDGITLMQDFVQTLGWGKPRLCEYTGQLFCSTCHT 882 (943)
Q Consensus 832 gL~sQ~yrCAgC~~~Ii~Gl~sLRd~LktLtv~k~RlC~YtG~YYCs~CH~ 882 (943)
.+-.+.++|+.|+..|... .+....+.+||..|+.
T Consensus 36 ~~H~~CF~C~~C~~~L~~~----------------~~~~~~g~~yC~~cy~ 70 (79)
T 1x62_A 36 HRHPECYVCTDCGTNLKQK----------------GHFFVEDQIYCEKHAR 70 (79)
T ss_dssp EECTTTTSCSSSCCCHHHH----------------CCEESSSCEECHHHHH
T ss_pred eeCcCcCeeCCCCCCCCCC----------------CeEeECCEEECHHHHH
Confidence 3445677888887765310 1223467788877654
No 47
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.99 E-value=20 Score=29.29 Aligned_cols=12 Identities=25% Similarity=1.032 Sum_probs=6.3
Q ss_pred cccccccccccc
Q 002283 836 QHYTCAGCHKHF 847 (943)
Q Consensus 836 Q~yrCAgC~~~I 847 (943)
..++|+.|+.+|
T Consensus 32 ~CF~C~~C~~~L 43 (72)
T 1wyh_A 32 HCFLCSGCEQPL 43 (72)
T ss_dssp TTCBCTTTCCBT
T ss_pred ccCeECCCCCcC
Confidence 445555555544
No 48
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.81 E-value=20 Score=29.26 Aligned_cols=13 Identities=15% Similarity=0.698 Sum_probs=7.3
Q ss_pred ccccccccccccc
Q 002283 835 SQHYTCAGCHKHF 847 (943)
Q Consensus 835 sQ~yrCAgC~~~I 847 (943)
...++|+.|+.+|
T Consensus 31 ~~CF~C~~C~~~L 43 (72)
T 1x4k_A 31 ETCFICHRCQQPI 43 (72)
T ss_dssp TTTTCCSSSCCCC
T ss_pred ccCCcccccCCcc
Confidence 3455666666554
No 49
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=20.51 E-value=19 Score=29.34 Aligned_cols=14 Identities=21% Similarity=0.660 Sum_probs=9.7
Q ss_pred cccccccccccccc
Q 002283 835 SQHYTCAGCHKHFD 848 (943)
Q Consensus 835 sQ~yrCAgC~~~Ii 848 (943)
...++|+.|+.+|.
T Consensus 30 ~~CF~C~~C~~~L~ 43 (65)
T 2iyb_E 30 TECFLCSCCSKCLI 43 (65)
T ss_dssp TTTSBCTTTCCBCT
T ss_pred CCCEECCCCCCcCC
Confidence 46677888877663
No 50
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.27 E-value=22 Score=28.99 Aligned_cols=13 Identities=23% Similarity=0.856 Sum_probs=7.8
Q ss_pred ccccccccccccc
Q 002283 835 SQHYTCAGCHKHF 847 (943)
Q Consensus 835 sQ~yrCAgC~~~I 847 (943)
...++|+.|+.+|
T Consensus 29 ~~CF~C~~C~~~L 41 (69)
T 2cur_A 29 ADCFVCVTCSKKL 41 (69)
T ss_dssp TTTTBCTTTCCBC
T ss_pred cCcCEECCCCCCC
Confidence 3556666666655
Done!