BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002284
(943 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 77/155 (49%), Gaps = 17/155 (10%)
Query: 644 LECLEIHSCPSLTCLISK-NELRAALDYLVVGNLPQALKFLSIWHCSKLESIVERLDNKI 702
L L I +CP LT L A+ ++ + NL Q+L+ + + S+ + N
Sbjct: 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNL-QSLRL----EWTGIRSLPASIANLQ 206
Query: 703 SLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPE--GGLLSAKLKRLVIYGC 760
+L+ ++I + L L +H L L+E+D++ C L ++P GG A LKRL++ C
Sbjct: 207 NLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGG--RAPLKRLILKDC 263
Query: 761 KKLEALPEGMHNLSSLQYLTIGG------VPSLLC 789
L LP +H L+ L+ L + G +PSL+
Sbjct: 264 SNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIA 298
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 87/207 (42%), Gaps = 21/207 (10%)
Query: 553 LVSFP-EAVLPSQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLTYIAGVQLP 611
L FP +A S L+ +I D+ L LP+ + LE L + L A +
Sbjct: 93 LPQFPDQAFRLSHLQHXTI-DAAGLXELPD--TXQQFAGLETLTLARNPLRALPASIASL 149
Query: 612 PSLKQLEIYNCDNLRTLTAE-EGIHSSRRHTSL-------LECLEIHSCPS-------LT 656
L++L I C L L +S H L LE I S P+ L
Sbjct: 150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLK 209
Query: 657 CLISKNELRAALDYLVVGNLPQALKFLSIWHCSKLESIVERLDNKISLEVIEIVSCENLK 716
L +N +AL + +LP+ L+ L + C+ L + + L+ + + C NL
Sbjct: 210 SLKIRNSPLSALGP-AIHHLPK-LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL 267
Query: 717 MLPHGLHKLWHLQEIDIQDCENLVSFP 743
LP +H+L L+++D++ C NL P
Sbjct: 268 TLPLDIHRLTQLEKLDLRGCVNLSRLP 294
Score = 35.4 bits (80), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 3/101 (2%)
Query: 85 LLKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEG 144
L+ LQ LR L I +P SI +L L+ L + + + L +++ L L L L G
Sbjct: 182 LVNLQSLR---LEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRG 238
Query: 145 CRELKKKCADMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCL 185
C L+ G L L + +L +PL I +LT L
Sbjct: 239 CTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQL 279
Score = 34.3 bits (77), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 58/212 (27%), Positives = 87/212 (41%), Gaps = 33/212 (15%)
Query: 701 KISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVIYGC 760
+++LE+ + L P +L HLQ I D L P+ A L+ L +
Sbjct: 83 RVALELRSVP----LPQFPDQAFRLSHLQHXTI-DAAGLXELPDTXQQFAGLETLTL-AR 136
Query: 761 KKLEALPEGMHNLSSLQYLTIGGVPSLLCFTEDGLFPTNLHSLEIDGMKIWKSLMQLGGF 820
L ALP + +L+ L+ L+I P L TE P L S + G + L+ L
Sbjct: 137 NPLRALPASIASLNRLRELSIRACPEL---TE---LPEPLASTDASGEH--QGLVNLQSL 188
Query: 821 H-RYTSLRRLAISGCD-EDMVSFPLEDIRLGTTLPACLTQLEIFNFPNLERLSSSICDQN 878
+T +R L S + +++ S + + L PA I + P LE L C
Sbjct: 189 RLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPA------IHHLPKLEELDLRGC--- 239
Query: 879 LTSLKLTNCPKLKYFPEKGLPASLLRLEIKKC 910
T+L+ Y P G A L RL +K C
Sbjct: 240 -TALR-------NYPPIFGGRAPLKRLILKDC 263
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Query: 71 SSRPGYLA---RSI-LPRL----LKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGT 122
+++PG +A RS+ LP+ +L L+ ++ + E+PD+ + L L L+
Sbjct: 78 ATQPGRVALELRSVPLPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARN 137
Query: 123 QIRTLPESVNKLYNLHTLLLEGCRELKK 150
+R LP S+ L L L + C EL +
Sbjct: 138 PLRALPASIASLNRLRELSIRACPELTE 165
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 50/87 (57%), Gaps = 3/87 (3%)
Query: 58 IQHLRTLLPVTLLSSRPGYLARSILPRLLKLQRLRVFSLRGYLISEVPDSIGDLSYLRYL 117
++HL L + L + + S+L LL+LQ +++ G L P + L+YLR L
Sbjct: 244 VRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVG--GQLAVVEPYAFRGLNYLRVL 301
Query: 118 NLSGTQIRTLPESV-NKLYNLHTLLLE 143
N+SG Q+ TL ESV + + NL TL+L+
Sbjct: 302 NVSGNQLTTLEESVFHSVGNLETLILD 328
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 56/94 (59%), Gaps = 5/94 (5%)
Query: 689 SKLESIVERLDNKISLEVIEIVSCENLKMLPHGL-HKLWHLQEIDIQDCENLVSFPEGGL 747
+KL+S+ + NK++ +S L+ LP+G+ KL L+E+ + + L S P+G
Sbjct: 62 NKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL-NTNQLQSLPDGVF 120
Query: 748 LS-AKLKRLVIYGCKKLEALPEGMHN-LSSLQYL 779
+LK L +Y +L+++P+G+ + L+SLQY+
Sbjct: 121 DKLTQLKDLRLYQ-NQLKSVPDGVFDRLTSLQYI 153
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 88 LQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESV-NKLYNLHTLLLEGCR 146
L +R +L G + ++ ++ +L+ L YL L+G Q+++LP V +KL NL L+L +
Sbjct: 62 LPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ 120
Query: 147 ELKKKCADMGNLIKLHHLNNSNTDSLEEMPLGI-GKLTCLLTL 188
L L +LN ++ + L+ +P G+ KLT L L
Sbjct: 121 LQSLPDGVFDKLTNLTYLNLAH-NQLQSLPKGVFDKLTNLTEL 162
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 56/106 (52%), Gaps = 10/106 (9%)
Query: 88 LQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESV-NKLYNLHTLLL--EG 144
L +R +L G + ++ ++ +L+ L YL L+G Q+++LP V +KL NL L+L
Sbjct: 62 LPNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQ 120
Query: 145 CRELKKKCAD-MGNLIKLHHLNNSNTDSLEEMPLGI-GKLTCLLTL 188
+ L D + NL L+ +N L+ +P G+ KLT L L
Sbjct: 121 LQSLPDGVFDKLTNLTYLYLYHN----QLQSLPKGVFDKLTNLTRL 162
>pdb|4AY9|X Chain X, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Y Chain Y, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
pdb|4AY9|Z Chain Z, Structure Of Follicle-Stimulating Hormone In Complex With
The Entire Ectodomain Of Its Receptor
Length = 350
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 76/186 (40%), Gaps = 39/186 (20%)
Query: 81 ILPRLLKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTL 140
+ L KL +R+ L P++ +L L+YL +S T I+ LP+ V+K+++L +
Sbjct: 74 VFSNLPKLHEIRIEKANNLLYIN-PEAFQNLPNLQYLLISNTGIKHLPD-VHKIHSLQKV 131
Query: 141 LLE------------------------------GCRELKKKCADMGNLIKLHHLNNSNTD 170
LL+ G +E+ N +L LN S+ +
Sbjct: 132 LLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAF---NGTQLDELNLSDNN 188
Query: 171 SLEEMPLGI---GKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGD 227
+LEE+P + +L + + GL LK L T N+ KL ++ +
Sbjct: 189 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKL-RARSTYNLKKLPTLEKLVA 247
Query: 228 AMEAQL 233
MEA L
Sbjct: 248 LMEASL 253
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 30.8 bits (68), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%)
Query: 80 SILPRLLKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNL 137
+I + K L L G ++E+P I +LS LR L+LS ++ +LP + + L
Sbjct: 238 NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQL 295
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 82 LPRLLK-LQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTL 140
LP +K L LRV L ++ +P +G L+Y + TLP L NL L
Sbjct: 262 LPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFL 321
Query: 141 LLEG 144
+EG
Sbjct: 322 GVEG 325
>pdb|1XWD|C Chain C, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
pdb|1XWD|F Chain F, Crystal Structure Of Human Follicle Stimulating Hormone
Complexed With Its Receptor
Length = 252
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 77/184 (41%), Gaps = 39/184 (21%)
Query: 81 ILPRLLKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTL 140
+ L KL +R+ L P++ +L L+YL +S T I+ LP+ V+K+++L +
Sbjct: 74 VFSNLPKLHEIRIEKANNLLYIN-PEAFQNLPNLQYLLISNTGIKHLPD-VHKIHSLQKV 131
Query: 141 LLE------------------------------GCRELKKKCADMGNLIKLHHLNNSNTD 170
LL+ G +E+ CA G +L LN S+ +
Sbjct: 132 LLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI-HNCAFNG--TQLDELNLSDNN 188
Query: 171 SLEEMPLGI---GKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGD 227
+LEE+P + +L + + GL LK L T N+ KL ++ +
Sbjct: 189 NLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKL-RARSTYNLKKLPTLEKLVA 247
Query: 228 AMEA 231
MEA
Sbjct: 248 LMEA 251
>pdb|3OEH|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
pdb|3OEH|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Beta-V279f
Length = 484
Score = 30.0 bits (66), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 385 HIVRCSKLQGTLPTHLTLLDILVVQNFTSLPALCKLRIDRCKKV 428
H SK+Q TL T+ +L DI+ + L KL ++R +K+
Sbjct: 373 HYDVASKVQETLQTYKSLQDIIAILGMDELSEQDKLTVERARKI 416
>pdb|3FKS|D Chain D, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|E Chain E, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|F Chain F, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|M Chain M, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|N Chain N, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|O Chain O, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|V Chain V, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|W Chain W, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3FKS|X Chain X, Yeast F1 Atpase In The Absence Of Bound Nucleotides
pdb|3OE7|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OE7|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Gamma-I270t
pdb|3OEE|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OEE|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-F405s
pdb|3OFN|D Chain D, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|E Chain E, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|F Chain F, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|M Chain M, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|N Chain N, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|O Chain O, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|V Chain V, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|W Chain W, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
pdb|3OFN|X Chain X, Structure Of Four Mutant Forms Of Yeast F1 Atpase:
Alpha-N67i
Length = 484
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 385 HIVRCSKLQGTLPTHLTLLDILVVQNFTSLPALCKLRIDRCKKV 428
H SK+Q TL T+ +L DI+ + L KL ++R +K+
Sbjct: 373 HYDVASKVQETLQTYKSLQDIIAILGMDELSEQDKLTVERARKI 416
>pdb|2HLD|D Chain D, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|E Chain E, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|F Chain F, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|M Chain M, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|N Chain N, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|O Chain O, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|V Chain V, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|W Chain W, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2HLD|X Chain X, Crystal Structure Of Yeast Mitochondrial F1-Atpase
pdb|2WPD|D Chain D, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|E Chain E, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|2WPD|F Chain F, The Mg.Adp Inhibited State Of The Yeast F1c10 Atp Synthase
pdb|3ZRY|D Chain D, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|E Chain E, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZRY|F Chain F, Rotor Architecture In The F(1)-C(10)-Ring Complex Of The
Yeast F-Atp Synthase
pdb|3ZIA|D Chain D, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|E Chain E, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|F Chain F, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|N Chain N, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|O Chain O, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
pdb|3ZIA|P Chain P, The Structure Of F1-atpase From Saccharomyces Cerevisiae
Inhibited By Its Regulatory Protein If1
Length = 478
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 385 HIVRCSKLQGTLPTHLTLLDILVVQNFTSLPALCKLRIDRCKKV 428
H SK+Q TL T+ +L DI+ + L KL ++R +K+
Sbjct: 367 HYDVASKVQETLQTYKSLQDIIAILGMDELSEQDKLTVERARKI 410
>pdb|4B2Q|E Chain E, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|F Chain F, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|EE Chain e, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|FF Chain f, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 473
Score = 30.0 bits (66), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 385 HIVRCSKLQGTLPTHLTLLDILVVQNFTSLPALCKLRIDRCKKV 428
H SK+Q TL T+ +L DI+ + L KL ++R +K+
Sbjct: 362 HYDVASKVQETLQTYKSLQDIIAILGMDELSEQDKLTVERARKI 405
>pdb|4B2Q|D Chain D, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
pdb|4B2Q|DD Chain d, Model Of The Yeast F1fo-Atp Synthase Dimer Based On
Subtomogram Average
Length = 470
Score = 30.0 bits (66), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 385 HIVRCSKLQGTLPTHLTLLDILVVQNFTSLPALCKLRIDRCKKV 428
H SK+Q TL T+ +L DI+ + L KL ++R +K+
Sbjct: 362 HYDVASKVQETLQTYKSLQDIIAILGMDELSEQDKLTVERARKI 405
>pdb|2XOK|D Chain D, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|E Chain E, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
pdb|2XOK|F Chain F, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A
Resolution
Length = 511
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 385 HIVRCSKLQGTLPTHLTLLDILVVQNFTSLPALCKLRIDRCKKV 428
H SK+Q TL T+ +L DI+ + L KL ++R +K+
Sbjct: 400 HYDVASKVQETLQTYKSLQDIIAILGMDELSEQDKLTVERARKI 443
>pdb|3EF1|A Chain A, The Structure Of Fcp1, An Essential Rna Polymerase Ii Ctd
Phosphatase
Length = 442
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 53/106 (50%), Gaps = 7/106 (6%)
Query: 713 ENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVIYGCKKL--EALPEGM 770
E L+ + +H +++ +E DI GL+ K+K+ V+ GC+ L +P G+
Sbjct: 309 ERLEKVLKDIHAVYYEEENDISSRSGNHKHANVGLIIPKMKQKVLKGCRLLFSGVIPLGV 368
Query: 771 HNLSS--LQYLTIGGVPSLLCFTEDGLFPTNLHSLEIDGMKIWKSL 814
LSS ++ G +L F+ + PT+L + +I K+ K++
Sbjct: 369 DVLSSDIAKWAMSFGAEVVLDFS---VPPTHLIAAKIRTEKVKKAV 411
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,719,960
Number of Sequences: 62578
Number of extensions: 1143955
Number of successful extensions: 2210
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 2156
Number of HSP's gapped (non-prelim): 80
length of query: 943
length of database: 14,973,337
effective HSP length: 108
effective length of query: 835
effective length of database: 8,214,913
effective search space: 6859452355
effective search space used: 6859452355
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)