Query 002284
Match_columns 943
No_of_seqs 712 out of 4524
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 20:05:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/002284.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/002284hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 8E-57 2.8E-61 541.1 23.8 658 81-935 69-766 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.1E-51 3.9E-56 496.3 31.1 633 88-913 49-740 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 1.9E-42 6.6E-47 413.3 43.6 83 92-177 7-90 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 3.8E-42 1.3E-46 410.8 38.3 567 80-833 18-618 (680)
5 3t6q_A CD180 antigen; protein- 100.0 9.5E-41 3.3E-45 393.2 34.3 83 296-390 128-213 (606)
6 3vq2_A TLR4, TOLL-like recepto 100.0 4.1E-41 1.4E-45 396.4 28.4 274 484-811 281-558 (606)
7 3t6q_A CD180 antigen; protein- 100.0 1.7E-40 5.7E-45 391.2 29.8 107 79-188 25-134 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 8.7E-40 3E-44 385.0 33.2 286 490-833 263-554 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 9.7E-37 3.3E-41 370.4 41.2 518 88-833 23-556 (844)
10 3j0a_A TOLL-like receptor 5; m 100.0 4.3E-37 1.5E-41 373.5 37.4 126 57-188 22-153 (844)
11 2z63_A TOLL-like receptor 4, v 100.0 4.1E-36 1.4E-40 351.4 29.3 94 79-175 20-115 (570)
12 2z63_A TOLL-like receptor 4, v 100.0 1.1E-35 3.8E-40 347.8 28.9 123 59-188 28-154 (570)
13 4eco_A Uncharacterized protein 100.0 9.5E-37 3.3E-41 357.7 19.1 124 59-188 81-278 (636)
14 2z81_A CD282 antigen, TOLL-lik 100.0 2.1E-35 7.1E-40 343.5 29.4 210 79-331 18-234 (549)
15 2z81_A CD282 antigen, TOLL-lik 100.0 2.2E-34 7.5E-39 334.8 31.8 483 89-834 5-507 (549)
16 2z7x_B TOLL-like receptor 1, v 100.0 4.1E-34 1.4E-38 329.8 30.5 112 695-810 367-480 (520)
17 4ecn_A Leucine-rich repeat pro 100.0 6.7E-34 2.3E-38 337.5 27.2 207 59-331 323-606 (876)
18 4eco_A Uncharacterized protein 100.0 1.5E-34 5.2E-39 339.0 21.4 188 89-331 81-284 (636)
19 4g8a_A TOLL-like receptor 4; l 100.0 3.7E-33 1.3E-37 331.6 29.6 522 79-786 44-579 (635)
20 4ecn_A Leucine-rich repeat pro 100.0 1.5E-33 5.1E-38 334.5 23.6 33 33-66 322-354 (876)
21 4g8a_A TOLL-like receptor 4; l 100.0 2.2E-32 7.7E-37 324.8 33.6 537 92-810 34-579 (635)
22 2z7x_B TOLL-like receptor 1, v 100.0 4.8E-33 1.6E-37 320.8 22.9 442 80-624 14-480 (520)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.7E-31 5.8E-36 310.2 24.4 438 80-623 45-508 (562)
24 1jl5_A Outer protein YOPM; leu 100.0 1.7E-31 5.8E-36 298.6 22.9 82 83-176 5-87 (454)
25 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.8E-29 6.1E-34 293.2 26.1 449 273-833 32-506 (562)
26 1jl5_A Outer protein YOPM; leu 100.0 2E-29 6.9E-34 281.8 20.0 283 57-467 9-305 (454)
27 3bz5_A Internalin-J, INLJ; leu 100.0 2.9E-28 9.8E-33 272.7 24.4 85 80-170 33-117 (457)
28 1o6v_A Internalin A; bacterial 100.0 8.5E-28 2.9E-32 271.9 26.4 96 87-188 44-139 (466)
29 3v47_A TOLL-like receptor 5B a 100.0 3.6E-28 1.2E-32 275.2 23.1 133 678-811 275-408 (455)
30 1o6v_A Internalin A; bacterial 99.9 2.9E-26 9.8E-31 259.4 28.2 233 296-601 45-277 (466)
31 3v47_A TOLL-like receptor 5B a 99.9 7.6E-27 2.6E-31 264.3 23.4 367 442-864 15-405 (455)
32 3bz5_A Internalin-J, INLJ; leu 99.9 7.9E-27 2.7E-31 261.0 21.9 117 54-188 37-153 (457)
33 4fmz_A Internalin; leucine ric 99.9 2.8E-25 9.7E-30 241.4 23.2 86 86-176 41-126 (347)
34 3o6n_A APL1; leucine-rich repe 99.9 3.5E-26 1.2E-30 252.7 15.7 284 56-426 42-329 (390)
35 2id5_A Lingo-1, leucine rich r 99.9 2.7E-25 9.1E-30 252.9 22.3 89 79-170 24-115 (477)
36 3o6n_A APL1; leucine-rich repe 99.9 1.7E-24 5.8E-29 239.1 25.6 309 457-812 43-353 (390)
37 4fmz_A Internalin; leucine ric 99.9 1.3E-24 4.5E-29 236.1 23.1 84 698-785 261-344 (347)
38 2id5_A Lingo-1, leucine rich r 99.9 3.6E-24 1.2E-28 243.6 25.8 277 457-787 54-333 (477)
39 3oja_B Anopheles plasmodium-re 99.9 4.2E-25 1.4E-29 257.6 16.8 283 57-426 49-335 (597)
40 3oja_B Anopheles plasmodium-re 99.9 5.9E-24 2E-28 247.8 24.9 310 457-813 49-360 (597)
41 2ft3_A Biglycan; proteoglycan, 99.9 2.3E-23 7.7E-28 224.4 19.6 194 89-331 33-228 (332)
42 1ogq_A PGIP-2, polygalacturona 99.9 1.9E-24 6.6E-29 229.8 9.1 249 34-363 50-304 (313)
43 1xku_A Decorin; proteoglycan, 99.9 4E-22 1.4E-26 214.5 23.7 267 488-833 52-328 (330)
44 2ft3_A Biglycan; proteoglycan, 99.9 2.2E-22 7.4E-27 216.7 21.4 273 488-833 54-329 (332)
45 4fcg_A Uncharacterized protein 99.9 8.5E-23 2.9E-27 218.4 18.1 191 87-337 79-270 (328)
46 1xku_A Decorin; proteoglycan, 99.9 1.8E-22 6E-27 217.3 19.6 137 268-427 167-305 (330)
47 1ogq_A PGIP-2, polygalacturona 99.9 1.4E-22 4.6E-27 215.6 12.3 252 488-812 50-305 (313)
48 3ogk_B Coronatine-insensitive 99.9 2E-23 6.9E-28 244.9 3.4 84 87-170 110-203 (592)
49 3ogk_B Coronatine-insensitive 99.9 3.4E-23 1.2E-27 243.0 3.8 377 377-809 110-524 (592)
50 4fcg_A Uncharacterized protein 99.9 7.4E-21 2.5E-25 203.3 20.0 229 515-806 80-309 (328)
51 2z80_A TOLL-like receptor 2, v 99.8 1.6E-20 5.5E-25 204.0 19.5 87 87-176 29-116 (353)
52 1z7x_W Ribonuclease inhibitor; 99.8 2.1E-22 7.2E-27 228.3 -2.0 84 87-170 26-124 (461)
53 1z7x_W Ribonuclease inhibitor; 99.8 3.9E-23 1.3E-27 234.3 -9.0 36 296-331 2-39 (461)
54 3g06_A SSPH2 (leucine-rich rep 99.8 1.7E-19 6E-24 207.2 19.9 81 87-177 38-118 (622)
55 3zyi_A Leucine-rich repeat-con 99.8 2.9E-19 9.8E-24 201.1 20.2 108 296-427 195-302 (452)
56 3zyj_A Leucine-rich repeat-con 99.8 4E-19 1.4E-23 199.1 20.9 233 80-427 57-291 (440)
57 2z66_A Variable lymphocyte rec 99.8 1E-19 3.5E-24 193.5 14.7 88 80-170 21-112 (306)
58 3o53_A Protein LRIM1, AGAP0063 99.8 1.5E-20 5.3E-25 200.3 7.6 150 679-833 121-271 (317)
59 2p1m_B Transport inhibitor res 99.8 2.2E-21 7.4E-26 227.8 0.4 154 678-833 372-540 (594)
60 2z80_A TOLL-like receptor 2, v 99.8 6.3E-19 2.2E-23 191.4 19.8 149 441-601 35-186 (353)
61 3o53_A Protein LRIM1, AGAP0063 99.8 1.9E-20 6.4E-25 199.7 5.5 254 477-815 23-279 (317)
62 3g06_A SSPH2 (leucine-rich rep 99.8 8.2E-18 2.8E-22 193.3 25.3 255 488-834 40-294 (622)
63 3zyi_A Leucine-rich repeat-con 99.8 2.3E-18 8E-23 193.6 19.5 239 275-574 57-301 (452)
64 2z66_A Variable lymphocyte rec 99.8 2.2E-18 7.5E-23 183.2 18.0 133 679-811 127-261 (306)
65 3zyj_A Leucine-rich repeat-con 99.8 2.2E-18 7.6E-23 193.0 18.3 240 274-574 45-290 (440)
66 1ozn_A Reticulon 4 receptor; N 99.8 8.2E-19 2.8E-23 184.2 11.7 88 698-785 149-236 (285)
67 1ozn_A Reticulon 4 receptor; N 99.8 8.5E-19 2.9E-23 184.1 11.3 219 276-551 15-236 (285)
68 2p1m_B Transport inhibitor res 99.8 6.6E-20 2.3E-24 215.2 2.9 379 484-889 101-518 (594)
69 1wwl_A Monocyte differentiatio 99.8 3.7E-19 1.3E-23 189.2 8.3 84 87-170 93-184 (312)
70 3oja_A Leucine-rich immune mol 99.8 1.8E-18 6.2E-23 195.2 13.7 239 513-832 31-270 (487)
71 1wwl_A Monocyte differentiatio 99.7 6.9E-19 2.3E-23 187.1 7.5 83 484-574 39-132 (312)
72 2z62_A TOLL-like receptor 4, v 99.7 8.8E-18 3E-22 175.4 13.0 203 89-331 28-235 (276)
73 3oja_A Leucine-rich immune mol 99.7 1.6E-18 5.5E-23 195.6 7.6 237 485-806 31-270 (487)
74 3rfs_A Internalin B, repeat mo 99.7 3.4E-17 1.2E-21 170.2 15.5 100 86-188 38-138 (272)
75 2o6q_A Variable lymphocyte rec 99.7 7.7E-17 2.6E-21 167.3 17.2 82 89-170 37-120 (270)
76 2z62_A TOLL-like receptor 4, v 99.7 5.2E-17 1.8E-21 169.5 14.7 94 92-188 10-105 (276)
77 2o6q_A Variable lymphocyte rec 99.7 1.3E-16 4.4E-21 165.7 17.0 95 90-188 17-114 (270)
78 1p9a_G Platelet glycoprotein I 99.7 1.4E-16 4.7E-21 166.7 16.1 87 80-170 24-111 (290)
79 2xwt_C Thyrotropin receptor; s 99.7 2.3E-16 7.8E-21 160.6 16.5 201 676-888 29-237 (239)
80 1h6u_A Internalin H; cell adhe 99.7 8E-17 2.7E-21 170.4 11.8 190 87-331 39-228 (308)
81 4glp_A Monocyte differentiatio 99.7 2.8E-16 9.5E-21 166.9 15.7 203 513-786 88-306 (310)
82 3rfs_A Internalin B, repeat mo 99.7 5.1E-17 1.7E-21 168.8 9.5 224 88-401 18-243 (272)
83 2xwt_C Thyrotropin receptor; s 99.7 6.6E-16 2.3E-20 157.2 16.8 125 679-809 106-237 (239)
84 1p9a_G Platelet glycoprotein I 99.7 1.5E-15 5.2E-20 158.7 18.8 200 536-810 6-207 (290)
85 4ay9_X Follicle-stimulating ho 99.7 1.4E-15 4.9E-20 164.2 19.1 102 441-551 13-115 (350)
86 4glp_A Monocyte differentiatio 99.6 2.3E-16 8E-21 167.4 10.6 205 87-331 89-305 (310)
87 2ast_B S-phase kinase-associat 99.6 1.2E-17 4E-22 180.4 -0.3 240 83-400 62-313 (336)
88 3m19_A Variable lymphocyte rec 99.6 1.5E-15 5.3E-20 155.6 15.4 80 89-170 14-94 (251)
89 4ay9_X Follicle-stimulating ho 99.6 4.5E-15 1.6E-19 160.3 18.4 224 675-909 27-255 (350)
90 1h6u_A Internalin H; cell adhe 99.6 7.5E-16 2.6E-20 162.9 10.9 195 55-311 37-231 (308)
91 2ast_B S-phase kinase-associat 99.6 6.1E-16 2.1E-20 166.9 9.1 247 518-814 49-309 (336)
92 3goz_A Leucine-rich repeat-con 99.6 3.1E-16 1.1E-20 170.4 4.3 104 72-176 5-125 (362)
93 2ca6_A RAN GTPase-activating p 99.6 1E-16 3.4E-21 176.4 -0.0 90 81-170 24-133 (386)
94 1h6t_A Internalin B; cell adhe 99.6 5.9E-15 2E-19 154.5 10.9 96 87-188 44-139 (291)
95 3goz_A Leucine-rich repeat-con 99.6 7.9E-16 2.7E-20 167.2 3.3 59 678-736 138-206 (362)
96 2ca6_A RAN GTPase-activating p 99.5 6.9E-16 2.4E-20 169.6 2.2 129 54-188 27-192 (386)
97 3m19_A Variable lymphocyte rec 99.5 9.1E-14 3.1E-18 142.3 16.6 155 676-834 33-189 (251)
98 2v9t_B SLIT homolog 2 protein 99.5 7.7E-14 2.6E-18 139.2 12.9 83 92-177 14-97 (220)
99 1xeu_A Internalin C; cellular 99.5 1.1E-14 3.8E-19 149.7 6.4 167 87-331 17-183 (263)
100 4ezg_A Putative uncharacterize 99.5 2.4E-14 8.1E-19 140.5 8.3 95 86-182 41-135 (197)
101 2o6s_A Variable lymphocyte rec 99.5 1.5E-13 5.3E-18 136.2 14.0 77 92-170 10-87 (208)
102 1m9s_A Internalin B; cell inva 99.5 3.6E-14 1.2E-18 162.9 9.4 97 86-188 40-136 (605)
103 3cvr_A Invasion plasmid antige 99.5 4.7E-14 1.6E-18 159.9 9.5 178 90-334 60-244 (571)
104 1h6t_A Internalin B; cell adhe 99.5 1.6E-13 5.5E-18 143.5 12.1 120 55-188 42-161 (291)
105 3cvr_A Invasion plasmid antige 99.5 1.3E-13 4.4E-18 156.4 12.2 91 517-622 60-150 (571)
106 3e6j_A Variable lymphocyte rec 99.5 3.7E-13 1.3E-17 135.2 13.3 77 91-170 21-99 (229)
107 4ezg_A Putative uncharacterize 99.5 2.8E-13 9.5E-18 132.8 12.0 104 679-785 89-192 (197)
108 2v70_A SLIT-2, SLIT homolog 2 99.5 3.1E-13 1.1E-17 134.8 12.4 77 92-170 14-92 (220)
109 2xot_A Amphoterin-induced prot 99.4 1.3E-13 4.5E-18 149.4 8.5 81 90-170 40-123 (361)
110 1m9s_A Internalin B; cell inva 99.4 1.3E-13 4.3E-18 158.4 7.8 96 87-188 19-114 (605)
111 2je0_A Acidic leucine-rich nuc 99.4 7.7E-13 2.6E-17 123.1 8.6 126 57-190 15-147 (149)
112 2v9t_B SLIT homolog 2 protein 99.4 4.2E-12 1.4E-16 126.6 14.3 133 676-810 30-164 (220)
113 2v70_A SLIT-2, SLIT homolog 2 99.4 4.7E-12 1.6E-16 126.2 13.8 135 677-811 31-166 (220)
114 2ell_A Acidic leucine-rich nuc 99.4 1.3E-12 4.4E-17 124.5 9.3 127 58-193 23-157 (168)
115 1dce_A Protein (RAB geranylger 99.4 1.6E-14 5.4E-19 165.0 -5.0 69 109-188 346-414 (567)
116 2o6s_A Variable lymphocyte rec 99.4 2E-12 6.9E-17 128.1 10.6 147 676-833 26-174 (208)
117 1xeu_A Internalin C; cellular 99.4 2.5E-12 8.4E-17 132.2 11.5 96 86-188 38-133 (263)
118 1dce_A Protein (RAB geranylger 99.3 4.7E-14 1.6E-18 161.1 -2.6 175 86-332 346-545 (567)
119 1a9n_A U2A', U2A'; complex (nu 99.3 3.1E-12 1.1E-16 122.7 9.2 130 53-193 13-150 (176)
120 2wfh_A SLIT homolog 2 protein 99.3 2.3E-12 7.9E-17 125.3 7.7 107 80-189 24-132 (193)
121 4b8c_D Glucose-repressible alc 99.3 3.1E-12 1.1E-16 151.0 10.0 149 34-189 173-322 (727)
122 3e6j_A Variable lymphocyte rec 99.3 1.2E-11 4E-16 124.3 12.7 130 677-809 39-170 (229)
123 2ell_A Acidic leucine-rich nuc 99.3 4.2E-12 1.4E-16 120.9 8.9 137 31-178 21-165 (168)
124 1w8a_A SLIT protein; signaling 99.3 2.7E-12 9.3E-17 124.9 7.1 84 87-170 52-137 (192)
125 2xot_A Amphoterin-induced prot 99.3 6.3E-12 2.1E-16 136.2 10.6 154 676-833 37-198 (361)
126 4b8c_D Glucose-repressible alc 99.3 9.3E-13 3.2E-17 155.5 3.4 121 54-182 219-339 (727)
127 3sb4_A Hypothetical leucine ri 99.2 1.5E-11 5.2E-16 131.4 10.8 290 57-421 23-327 (329)
128 2wfh_A SLIT homolog 2 protein 99.2 1.4E-11 4.9E-16 119.7 9.3 95 92-189 13-108 (193)
129 2je0_A Acidic leucine-rich nuc 99.2 7.6E-12 2.6E-16 116.3 6.7 101 87-189 15-119 (149)
130 1w8a_A SLIT protein; signaling 99.2 1.3E-11 4.4E-16 120.1 8.3 108 79-188 21-131 (192)
131 3sb4_A Hypothetical leucine ri 99.2 1.2E-10 4.2E-15 124.3 14.4 110 678-792 202-314 (329)
132 1a9n_A U2A', U2A'; complex (nu 99.2 1.7E-11 5.9E-16 117.5 5.9 102 84-189 14-119 (176)
133 1ds9_A Outer arm dynein; leuci 99.2 9.1E-13 3.1E-17 129.3 -3.8 103 82-188 41-145 (198)
134 2r9u_A Variable lymphocyte rec 99.1 6.8E-11 2.3E-15 112.6 7.8 102 78-183 24-128 (174)
135 2o6r_A Variable lymphocyte rec 99.1 1.3E-10 4.5E-15 111.5 8.6 89 81-170 43-135 (177)
136 3g39_A Variable lymphocyte rec 99.1 1.4E-10 4.9E-15 110.0 7.8 90 79-170 22-113 (170)
137 1ds9_A Outer arm dynein; leuci 99.1 6.2E-12 2.1E-16 123.2 -2.4 126 54-189 43-180 (198)
138 3g39_A Variable lymphocyte rec 99.1 1.4E-10 4.9E-15 110.0 6.9 101 90-193 10-112 (170)
139 2r9u_A Variable lymphocyte rec 99.1 1.7E-10 5.7E-15 109.9 7.0 98 92-193 15-115 (174)
140 4fdw_A Leucine rich hypothetic 99.0 1.2E-08 4.3E-13 110.9 21.5 235 459-785 113-356 (401)
141 2o6r_A Variable lymphocyte rec 99.0 2.1E-09 7.2E-14 103.0 10.3 108 702-811 28-137 (177)
142 4fs7_A Uncharacterized protein 98.9 5.3E-08 1.8E-12 106.6 20.6 111 478-599 152-263 (394)
143 4fs7_A Uncharacterized protein 98.9 2.5E-08 8.4E-13 109.3 17.3 83 456-550 294-376 (394)
144 4fdw_A Leucine rich hypothetic 98.9 3.8E-08 1.3E-12 107.1 17.7 256 58-388 112-379 (401)
145 2ifg_A High affinity nerve gro 98.8 5.8E-09 2E-13 112.3 6.7 88 80-170 23-114 (347)
146 2ifg_A High affinity nerve gro 98.7 2.2E-08 7.7E-13 107.7 7.7 99 92-193 11-113 (347)
147 4gt6_A Cell surface protein; l 98.5 7.7E-06 2.6E-10 89.3 22.2 85 81-168 54-146 (394)
148 4gt6_A Cell surface protein; l 98.5 8.9E-06 3E-10 88.8 22.7 105 697-808 260-367 (394)
149 3un9_A NLR family member X1; l 98.4 3.2E-08 1.1E-12 106.6 0.2 84 87-170 70-166 (372)
150 3un9_A NLR family member X1; l 98.4 7.9E-08 2.7E-12 103.5 1.5 106 59-170 101-222 (372)
151 3e4g_A ATP synthase subunit S, 98.3 6.3E-07 2.2E-11 83.0 5.7 89 798-892 61-154 (176)
152 2ra8_A Uncharacterized protein 98.2 1.4E-06 4.7E-11 92.8 5.8 82 698-782 135-227 (362)
153 2ra8_A Uncharacterized protein 98.1 6.4E-06 2.2E-10 87.7 9.8 64 532-597 164-227 (362)
154 4h09_A Hypothetical leucine ri 98.1 0.00045 1.5E-08 74.9 24.6 124 457-600 44-169 (379)
155 4h09_A Hypothetical leucine ri 98.1 0.00057 2E-08 74.0 25.4 80 482-571 40-121 (379)
156 3rw6_A Nuclear RNA export fact 98.1 3.7E-06 1.3E-10 84.4 6.1 79 109-189 167-257 (267)
157 3e4g_A ATP synthase subunit S, 98.0 2.1E-06 7.2E-11 79.5 2.0 83 751-834 62-149 (176)
158 3rw6_A Nuclear RNA export fact 98.0 2E-06 6.7E-11 86.5 1.8 79 87-166 168-258 (267)
159 1io0_A Tropomodulin; LRR prote 97.8 7E-06 2.4E-10 78.5 3.3 84 87-170 63-162 (185)
160 1io0_A Tropomodulin; LRR prote 97.7 2.2E-05 7.6E-10 75.0 5.4 105 86-191 33-159 (185)
161 3rfe_A Platelet glycoprotein I 96.6 0.0024 8.1E-08 56.3 5.5 54 92-147 11-67 (130)
162 1pgv_A TMD-1, tropomodulin TMD 94.5 0.036 1.2E-06 52.2 5.1 83 87-169 39-136 (197)
163 3rfe_A Platelet glycoprotein I 94.3 0.033 1.1E-06 48.9 4.1 53 115-170 11-66 (130)
164 1pgv_A TMD-1, tropomodulin TMD 93.2 0.061 2.1E-06 50.7 4.1 110 56-170 38-168 (197)
165 2a5y_B CED-4; apoptosis; HET: 59.3 1.3 4.6E-05 49.8 -1.3 18 1-18 456-473 (549)
166 2lz0_A Uncharacterized protein 50.7 19 0.00064 29.3 4.6 47 475-526 7-53 (100)
167 2lz0_A Uncharacterized protein 22.7 67 0.0023 25.9 3.5 46 501-550 8-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=8e-57 Score=541.06 Aligned_cols=658 Identities=17% Similarity=0.089 Sum_probs=315.0
Q ss_pred cchhhhccCcccEEEecCccccccCccccCCCCCceeecCCCccc-ccch--hhhhccccceeecCCCcccccccHHH-h
Q 002284 81 ILPRLLKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIR-TLPE--SVNKLYNLHTLLLEGCRELKKKCADM-G 156 (943)
Q Consensus 81 ~~~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~-~lp~--~i~~L~~L~~L~L~~n~~~~~~p~~~-~ 156 (943)
+|+.+.++++|++++++.+.+..+|++|+++++|++|+|++|.+. .+|. .++++++|++|++++|...+..|..+ .
T Consensus 69 l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 148 (768)
T 3rgz_A 69 VSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL 148 (768)
T ss_dssp HHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCC
T ss_pred cChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhc
Confidence 677777889999999988888778888899999999999999887 4676 88899999999999987777777664 7
Q ss_pred ccccCceEEcCCCCCCcccccc---ccccccccccCceEeccCCCCCcccccCcccccCceeecccccccCccchhhccc
Q 002284 157 NLIKLHHLNNSNTDSLEEMPLG---IGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQL 233 (943)
Q Consensus 157 ~L~~L~~L~l~~n~~~~~~p~~---~~~L~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l 233 (943)
++++|++|++++|.+.+..|.. ++++++|++|+...+. +... ..+
T Consensus 149 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~------------------------l~~~--------~~~ 196 (768)
T 3rgz_A 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNK------------------------ISGD--------VDV 196 (768)
T ss_dssp CCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSE------------------------EESC--------CBC
T ss_pred cCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCc------------------------cccc--------CCc
Confidence 8889999999988855555544 5666666665321110 0000 002
Q ss_pred CCCCCCCeEEEEeecCCCCCCchhhhhHHhhhccCCCCCCcceEEEEeeCCCCCCcccCCCCcCCeeEEEEeCCCCCCCC
Q 002284 234 DGKKNLKVLMLEWTRSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSM 313 (943)
Q Consensus 234 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~~~~~~ 313 (943)
..+++|++|++++|.+++.. +.+.. +++|++|++++|.+.+.+
T Consensus 197 ~~l~~L~~L~Ls~n~l~~~~------------~~l~~-------------------------l~~L~~L~Ls~n~l~~~~ 239 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNNFSTGI------------PFLGD-------------------------CSALQHLDISGNKLSGDF 239 (768)
T ss_dssp TTCTTCCEEECCSSCCCSCC------------CBCTT-------------------------CCSCCEEECCSSCCCSCH
T ss_pred ccCCcCCEEECcCCcCCCCC------------ccccc-------------------------CCCCCEEECcCCcCCCcc
Confidence 34556666666655553211 11333 445555555555544444
Q ss_pred C-CCCCCCCCCeeEEecCcCceeeCccccCCCCCCCCCCcceeecccccccccccccccCCcccc-CCcccEEeeccCCC
Q 002284 314 P-SVGQLPSLKHLEVRGMSRVKRLGSEFYGNDSPIPFPCLETLHFAEMQEWEEWIPHGCSQEIEG-FPKLRELHIVRCSK 391 (943)
Q Consensus 314 ~-~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~-~~~L~~L~l~~c~~ 391 (943)
| .++.+++|++|++++|...+.++.. .+++|++|++++|.. . +.+|..+.. +++|++|++++ ++
T Consensus 240 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~--------~l~~L~~L~L~~n~l-~----~~ip~~~~~~~~~L~~L~Ls~-n~ 305 (768)
T 3rgz_A 240 SRAISTCTELKLLNISSNQFVGPIPPL--------PLKSLQYLSLAENKF-T----GEIPDFLSGACDTLTGLDLSG-NH 305 (768)
T ss_dssp HHHTTTCSSCCEEECCSSCCEESCCCC--------CCTTCCEEECCSSEE-E----ESCCCCSCTTCTTCSEEECCS-SE
T ss_pred cHHHhcCCCCCEEECCCCcccCccCcc--------ccCCCCEEECcCCcc-C----CccCHHHHhhcCcCCEEECcC-Cc
Confidence 4 4445555555555555432222211 144555555555431 1 112223322 25555555555 34
Q ss_pred ccCCCCCCCCCccEEEEeccCCCCccceEEeccCCcee-ee--ccCcccchhhhccccccccCC-Cc-cccCC-CCceee
Q 002284 392 LQGTLPTHLTLLDILVVQNFTSLPALCKLRIDRCKKVV-WR--STTDCESQLYKDISNQMFLGG-PL-KLQLP-KLDELD 465 (943)
Q Consensus 392 l~~~~p~~l~~L~~L~~~~~~~l~~L~~L~l~~~~~~~-~~--~~~~~~~l~~l~ls~n~l~~~-~~-~~~l~-~L~~L~ 465 (943)
+++.+|.. +..+++|++|++++|.... .. .+..+++++++++++|.+++. +. ...++ +|++|+
T Consensus 306 l~~~~p~~-----------~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~ 374 (768)
T 3rgz_A 306 FYGAVPPF-----------FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 374 (768)
T ss_dssp EEECCCGG-----------GGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEE
T ss_pred CCCccchH-----------HhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEE
Confidence 44444432 2344455555555554321 11 133344444444444444422 11 11222 444444
Q ss_pred eeEeecCccccccchhhhhhc--ccccCeEEeecCCCcccchhhhhhhcCccceeceEEEecCCCcCccchhccCCCCcC
Q 002284 466 ISIIIDGLSYIWQNETQLLQD--IATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPKSLLSLSSLT 543 (943)
Q Consensus 466 Ls~~~~~~~~~~~~~~~~~~~--l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 543 (943)
++ . +.+....+..+.. +++|+.|++++|.....++.. +..+++|++|++++|.+.+.+|..+..+++|+
T Consensus 375 Ls--~---N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~----l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 445 (768)
T 3rgz_A 375 LS--S---NNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT----LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 445 (768)
T ss_dssp CC--S---SEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGG----GGGCTTCCEEECCSSEEESCCCGGGGGCTTCC
T ss_pred cc--C---CCcCCCcChhhhhcccCCccEEECCCCccccccCHH----HhcCCCCCEEECcCCcccCcccHHHhcCCCCC
Confidence 44 1 1111111111111 445555555555322222222 45555555555555555555555555555555
Q ss_pred eeeccCCCCCcccCCCC-CCCCccEEEEecCCCCCcCccccccCCCCCccEEEeecCCCcccccCcCCCCCCceEEeccC
Q 002284 544 EMRIHNCSSLVSFPEAV-LPSQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLTYIAGVQLPPSLKQLEIYNC 622 (943)
Q Consensus 544 ~L~L~~n~~l~~~~~~~-~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~ 622 (943)
+|++++|...+.+|... .+++|++|++++|...+.+|..+ .++++|++|++++|++.+.+|..
T Consensus 446 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l--~~l~~L~~L~L~~N~l~~~~p~~-------------- 509 (768)
T 3rgz_A 446 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGL--SNCTNLNWISLSNNRLTGEIPKW-------------- 509 (768)
T ss_dssp EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGG--GGCTTCCEEECCSSCCCSCCCGG--------------
T ss_pred EEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHH--hcCCCCCEEEccCCccCCcCChH--------------
Confidence 55555555443333322 14455555555555444444432 24455555555555443333221
Q ss_pred cCccccccccCcccccccCCccceeeeecCCCcccccchhhHHHHhhhhhcCCCcccccEEEeecCCCchhhHhhhcccc
Q 002284 623 DNLRTLTAEEGIHSSRRHTSLLECLEIHSCPSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKLESIVERLDNKI 702 (943)
Q Consensus 623 ~~L~~l~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~~~~l~~~~~~~~~l~ 702 (943)
++.+ ++|+.|++++|...+.+|..+..++
T Consensus 510 --------------------------------------------------~~~l-~~L~~L~L~~N~l~~~~p~~l~~l~ 538 (768)
T 3rgz_A 510 --------------------------------------------------IGRL-ENLAILKLSNNSFSGNIPAELGDCR 538 (768)
T ss_dssp --------------------------------------------------GGGC-TTCCEEECCSSCCEEECCGGGGGCT
T ss_pred --------------------------------------------------HhcC-CCCCEEECCCCcccCcCCHHHcCCC
Confidence 1111 3455666666555555666666666
Q ss_pred cccEEEeeccCCcccccccccCCCCccEEeccCCCC----------------------CcccCcCCccccccceeeeccc
Q 002284 703 SLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCEN----------------------LVSFPEGGLLSAKLKRLVIYGC 760 (943)
Q Consensus 703 ~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~----------------------l~~~p~~~~~l~~L~~L~l~~~ 760 (943)
+|+.|++++|++.+.+|..+.....+..+++..+.. .+..+.....++.++.+++..+
T Consensus 539 ~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~ 618 (768)
T 3rgz_A 539 SLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSR 618 (768)
T ss_dssp TCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSC
T ss_pred CCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccc
Confidence 666666666666666666555544444333322100 0011111222233333444444
Q ss_pred cCCccCCCcCCCCCCCCceeecCCCCCccccCCCCCCCCcceEEecCCcchhccccccCCCCCCCccEEEecCCCCcCcc
Q 002284 761 KKLEALPEGMHNLSSLQYLTIGGVPSLLCFTEDGLFPTNLHSLEIDGMKIWKSLMQLGGFHRYTSLRRLAISGCDEDMVS 840 (943)
Q Consensus 761 ~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~~~~~ 840 (943)
...+.+|..+..+++|++|++++|.....+|..+..+++|+.|++++|.....++. .++.+++|++|+++++ .....
T Consensus 619 ~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~--~l~~L~~L~~LdLs~N-~l~g~ 695 (768)
T 3rgz_A 619 VYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD--EVGDLRGLNILDLSSN-KLDGR 695 (768)
T ss_dssp EEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCG--GGGGCTTCCEEECCSS-CCEEC
T ss_pred eecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCCh--HHhCCCCCCEEECCCC-cccCc
Confidence 44444444444455555555555444444444444444555555555544433332 3444555555555541 22223
Q ss_pred cCcccccccCCCCCCccEEEeecCCCCcccccccCCCCCCeEeecCCCCCccCCCCCCCCccceEeecCCchHHHHhhcc
Q 002284 841 FPLEDIRLGTTLPACLTQLEIFNFPNLERLSSSICDQNLTSLKLTNCPKLKYFPEKGLPASLLRLEIKKCPLIEKMCRQD 920 (943)
Q Consensus 841 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~C~~L~~~~~~~l~~sL~~L~i~~C~~l~~~~~~~ 920 (943)
+|... ..+++|++|++++++--..+|....+..+....+.+++.|-..| +. .|...
T Consensus 696 ip~~l-----~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~------------------l~-~C~~~ 751 (768)
T 3rgz_A 696 IPQAM-----SALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYP------------------LP-RCDPS 751 (768)
T ss_dssp CCGGG-----GGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTT------------------SC-CCCSC
T ss_pred CChHH-----hCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCC------------------Cc-CCCCC
Confidence 33222 12333444444443222233332233444444444554433221 11 35688
Q ss_pred CCCCccccccccEEE
Q 002284 921 IGPYWHLLIHIPCVL 935 (943)
Q Consensus 921 ~~~~~~~~~~~~~~~ 935 (943)
.+++|++++|++++.
T Consensus 752 ~~~~~~~~~~~~~~~ 766 (768)
T 3rgz_A 752 NADGYAHHQRSHHHH 766 (768)
T ss_dssp C--------------
T ss_pred ccCCCCCCCCccccC
Confidence 999999999998753
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.1e-51 Score=496.32 Aligned_cols=633 Identities=17% Similarity=0.087 Sum_probs=383.1
Q ss_pred cCcccEEEecCccccc----cCccccCCCCCceeecCCCcccccchhhhhccccceeecCCCcccccccH--HHhccccC
Q 002284 88 LQRLRVFSLRGYLISE----VPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCA--DMGNLIKL 161 (943)
Q Consensus 88 l~~L~~L~L~~n~i~~----lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~--~~~~L~~L 161 (943)
-.+++.|+|+++.+.. +|.++.++++|++++++.+.+..+|+.|+++++|++|+|++|.+.+.+|. .++++++|
T Consensus 49 ~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L 128 (768)
T 3rgz_A 49 DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGL 128 (768)
T ss_dssp TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTC
T ss_pred CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCC
Confidence 3689999999988654 78899999999999999999988889999999999999999998888888 89999999
Q ss_pred ceEEcCCCCCCccccccc-cccccccccCceEeccCCCCCcccccCcccccCceeecccccccCccchhhcccCCCCCCC
Q 002284 162 HHLNNSNTDSLEEMPLGI-GKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGKKNLK 240 (943)
Q Consensus 162 ~~L~l~~n~~~~~~p~~~-~~L~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~ 240 (943)
++|++++|.+.+.+|..+ +++++|++|
T Consensus 129 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L---------------------------------------------------- 156 (768)
T 3rgz_A 129 KFLNVSSNTLDFPGKVSGGLKLNSLEVL---------------------------------------------------- 156 (768)
T ss_dssp CEEECCSSEEECCSSCCSCCCCTTCSEE----------------------------------------------------
T ss_pred CEEECcCCccCCcCCHHHhccCCCCCEE----------------------------------------------------
Confidence 999999998666666553 566666655
Q ss_pred eEEEEeecCCCCCCchhhhhHHhhhccCCCCCCcceEEEEeeCCCCCCcccCCCCcCCeeEEEEeCCCCCCCCCCCCCCC
Q 002284 241 VLMLEWTRSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSMPSVGQLP 320 (943)
Q Consensus 241 ~L~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~l~ 320 (943)
++++|.+++... .....+..+++|+.|+++++........ ..+++|++|++++|.+.+.+|.++.++
T Consensus 157 --~Ls~n~l~~~~~--------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~l~~l~ 223 (768)
T 3rgz_A 157 --DLSANSISGANV--------VGWVLSDGCGELKHLAISGNKISGDVDV---SRCVNLEFLDVSSNNFSTGIPFLGDCS 223 (768)
T ss_dssp --ECCSSCCEEETH--------HHHHHTTCCTTCCEEECCSSEEESCCBC---TTCTTCCEEECCSSCCCSCCCBCTTCC
T ss_pred --ECCCCccCCcCC--------hhhhhhccCCCCCEEECCCCcccccCCc---ccCCcCCEEECcCCcCCCCCcccccCC
Confidence 222222210000 0001122333444444444332222211 338889999999999988888888999
Q ss_pred CCCeeEEecCcCceeeCccccCCCCCCCCCCcceeecccccccccccccccCCccccCCcccEEeeccCCCccCCCCCCC
Q 002284 321 SLKHLEVRGMSRVKRLGSEFYGNDSPIPFPCLETLHFAEMQEWEEWIPHGCSQEIEGFPKLRELHIVRCSKLQGTLPTHL 400 (943)
Q Consensus 321 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l 400 (943)
+|++|++++|...+.++..+.. +++|++|++++|.. ... .+.. .+++|++|++++ +++++.+|..+
T Consensus 224 ~L~~L~Ls~n~l~~~~~~~l~~------l~~L~~L~Ls~n~l-~~~----~~~~--~l~~L~~L~L~~-n~l~~~ip~~~ 289 (768)
T 3rgz_A 224 ALQHLDISGNKLSGDFSRAIST------CTELKLLNISSNQF-VGP----IPPL--PLKSLQYLSLAE-NKFTGEIPDFL 289 (768)
T ss_dssp SCCEEECCSSCCCSCHHHHTTT------CSSCCEEECCSSCC-EES----CCCC--CCTTCCEEECCS-SEEEESCCCCS
T ss_pred CCCEEECcCCcCCCcccHHHhc------CCCCCEEECCCCcc-cCc----cCcc--ccCCCCEEECcC-CccCCccCHHH
Confidence 9999999998755444443333 77777777777742 211 2221 567777777777 46666666644
Q ss_pred CCccEEEEeccCCCCccceEEeccCCceeeeccCcccchhhhccccccccCCCccccCCCCceeeeeEeecCccccccch
Q 002284 401 TLLDILVVQNFTSLPALCKLRIDRCKKVVWRSTTDCESQLYKDISNQMFLGGPLKLQLPKLDELDISIIIDGLSYIWQNE 480 (943)
Q Consensus 401 ~~L~~L~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~ 480 (943)
...+++|++|++++|. +++ ..
T Consensus 290 ----------~~~~~~L~~L~Ls~n~----------------------l~~---------------------------~~ 310 (768)
T 3rgz_A 290 ----------SGACDTLTGLDLSGNH----------------------FYG---------------------------AV 310 (768)
T ss_dssp ----------CTTCTTCSEEECCSSE----------------------EEE---------------------------CC
T ss_pred ----------HhhcCcCCEEECcCCc----------------------CCC---------------------------cc
Confidence 1223555555555444 221 11
Q ss_pred hhhhhcccccCeEEeecCCCcccchhhhhhhcCccceeceEEEecCCCcCccchhccCCC-CcCeeeccCCCCCcccCCC
Q 002284 481 TQLLQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPKSLLSLS-SLTEMRIHNCSSLVSFPEA 559 (943)
Q Consensus 481 ~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~L~~n~~l~~~~~~ 559 (943)
+..+..+++|++|++++|.....++... +..+++|++|++++|.+.+.+|..+..++ +|++|++++|...+.++..
T Consensus 311 p~~~~~l~~L~~L~L~~n~l~~~ip~~~---l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~ 387 (768)
T 3rgz_A 311 PPFFGSCSLLESLALSSNNFSGELPMDT---LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387 (768)
T ss_dssp CGGGGGCTTCCEEECCSSEEEEECCHHH---HTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTT
T ss_pred chHHhcCCCccEEECCCCcccCcCCHHH---HhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChh
Confidence 2233444555555555553222333332 45555555555555555555555555554 5666666655544333332
Q ss_pred CC---CCCccEEEEecCCCCCcCccccccCCCCCccEEEeecCCCcccccCc-CCCCCCceEEeccCcCccccccccCcc
Q 002284 560 VL---PSQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLTYIAGV-QLPPSLKQLEIYNCDNLRTLTAEEGIH 635 (943)
Q Consensus 560 ~~---~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~~L~~L~l~~~~~L~~l~~~~~~~ 635 (943)
.. +++|++|++++|...+.+|..+ .++++|++|++++|.+.+.+|.. ...++|+.|++++|.-...++.
T Consensus 388 ~~~~~~~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~----- 460 (768)
T 3rgz_A 388 LCQNPKNTLQELYLQNNGFTGKIPPTL--SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQ----- 460 (768)
T ss_dssp TTCSTTCCCCEEECCSSEEEEECCGGG--GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCG-----
T ss_pred hhhcccCCccEEECCCCccccccCHHH--hcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCH-----
Confidence 21 3455566665555444455443 25566666666666544433322 3334455555555532222221
Q ss_pred cccccCCccceeeeecCCCcccccchhhHHHHhhhhhcCCCcccccEEEeecCCCchhhHhhhcccccccEEEeeccCCc
Q 002284 636 SSRRHTSLLECLEIHSCPSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKLESIVERLDNKISLEVIEIVSCENL 715 (943)
Q Consensus 636 ~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~ 715 (943)
.+..+ ++|++|++++|...+.+|..+.++++|++|++++|.+.
T Consensus 461 -~~~~l------------------------------------~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~ 503 (768)
T 3rgz_A 461 -ELMYV------------------------------------KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT 503 (768)
T ss_dssp -GGGGC------------------------------------TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC
T ss_pred -HHcCC------------------------------------CCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccC
Confidence 00111 23444444444444444444455555555555555555
Q ss_pred ccccccccCCCCccEEeccCCCCCcccCcCCccccccceeeeccccCCccCCCcCCCC----------------------
Q 002284 716 KMLPHGLHKLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVIYGCKKLEALPEGMHNL---------------------- 773 (943)
Q Consensus 716 ~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l---------------------- 773 (943)
+.+|.+++.+++|++|++++|...+.+|..+..+++|+.|++++|+..+.+|..+...
T Consensus 504 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (768)
T 3rgz_A 504 GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGM 583 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSC
T ss_pred CcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccc
Confidence 5555555555555555555554444455444445555555555555444554444333
Q ss_pred ------------------------CCCCceeecCCCCCccccCCCCCCCCcceEEecCCcchhccccccCCCCCCCccEE
Q 002284 774 ------------------------SSLQYLTIGGVPSLLCFTEDGLFPTNLHSLEIDGMKIWKSLMQLGGFHRYTSLRRL 829 (943)
Q Consensus 774 ------------------------~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L 829 (943)
+.++.+++..+..-..+|.....+++|+.|++++|.....++. .++.+++|++|
T Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~--~l~~l~~L~~L 661 (768)
T 3rgz_A 584 KKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK--EIGSMPYLFIL 661 (768)
T ss_dssp CTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCG--GGGGCTTCCEE
T ss_pred cccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCH--HHhccccCCEE
Confidence 3333334443433344555566678999999999988776665 68899999999
Q ss_pred EecCCCCcCcccCcccccccCCCCCCccEEEeecCCCCcccccc-cCCCCCCeEeecCCCCCccCCCCCCCCccceEeec
Q 002284 830 AISGCDEDMVSFPLEDIRLGTTLPACLTQLEIFNFPNLERLSSS-ICDQNLTSLKLTNCPKLKYFPEKGLPASLLRLEIK 908 (943)
Q Consensus 830 ~l~~c~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l~~C~~L~~~~~~~l~~sL~~L~i~ 908 (943)
++++ +.....+|... ..+++|+.|+++++.--..+|.. ..++.|+.|++++++--..+|..+...++....+.
T Consensus 662 ~Ls~-N~l~g~ip~~l-----~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~ 735 (768)
T 3rgz_A 662 NLGH-NDISGSIPDEV-----GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFL 735 (768)
T ss_dssp ECCS-SCCCSCCCGGG-----GGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGC
T ss_pred eCcC-CccCCCCChHH-----hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhc
Confidence 9999 34445777655 36788999999996533356644 26789999999997655677877777777777888
Q ss_pred CCchH
Q 002284 909 KCPLI 913 (943)
Q Consensus 909 ~C~~l 913 (943)
++|.+
T Consensus 736 gN~~L 740 (768)
T 3rgz_A 736 NNPGL 740 (768)
T ss_dssp SCTEE
T ss_pred CCchh
Confidence 88875
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.9e-42 Score=413.32 Aligned_cols=83 Identities=23% Similarity=0.259 Sum_probs=63.9
Q ss_pred cEEEecCccccccCccccCCCCCceeecCCCcccccc-hhhhhccccceeecCCCcccccccHHHhccccCceEEcCCCC
Q 002284 92 RVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLP-ESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNTD 170 (943)
Q Consensus 92 ~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l~~n~ 170 (943)
+++|+++++++.+|..+. +++++|+|++|.++.+| ..|+++++|++|++++|.+.+..|..|+++++|++|++++|.
T Consensus 7 ~~~~cs~~~L~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 84 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84 (680)
T ss_dssp SEEECCSSCCSSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred CeeECCCCCccccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc
Confidence 567888888888887665 67888888888888875 467888888888888887666667778888888888888887
Q ss_pred CCccccc
Q 002284 171 SLEEMPL 177 (943)
Q Consensus 171 ~~~~~p~ 177 (943)
+..+|.
T Consensus 85 -l~~l~~ 90 (680)
T 1ziw_A 85 -LSQLSD 90 (680)
T ss_dssp -CCCCCT
T ss_pred -cCccCh
Confidence 555554
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.8e-42 Score=410.81 Aligned_cols=567 Identities=17% Similarity=0.145 Sum_probs=304.7
Q ss_pred ccchhhhccCcccEEEecCccccccC-ccccCCCCCceeecCCCccccc-chhhhhccccceeecCCCcccccccH-HHh
Q 002284 80 SILPRLLKLQRLRVFSLRGYLISEVP-DSIGDLSYLRYLNLSGTQIRTL-PESVNKLYNLHTLLLEGCRELKKKCA-DMG 156 (943)
Q Consensus 80 ~~~~~~~~l~~L~~L~L~~n~i~~lp-~~~~~l~~L~~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~n~~~~~~p~-~~~ 156 (943)
.+|.++. +++++|+|++|.++.+| ..|+++++|++|+|++|.++.+ |..|+++++|++|++++|. +..+|. .|+
T Consensus 18 ~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~ 94 (680)
T 1ziw_A 18 QVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE-LSQLSDKTFA 94 (680)
T ss_dssp SCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC-CCCCCTTTTT
T ss_pred ccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc-cCccChhhhc
Confidence 4555443 67778888888777775 4577788888888888877776 5677788888888888775 344444 577
Q ss_pred ccccCceEEcCCCCCCcccc-ccccccccccccCceEeccCCCCCcccccCcccccCceeecccccccCccchhhcccCC
Q 002284 157 NLIKLHHLNNSNTDSLEEMP-LGIGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDG 235 (943)
Q Consensus 157 ~L~~L~~L~l~~n~~~~~~p-~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~ 235 (943)
++++|++|++++|. +..+| ..|+++++|++|+...+. +.. ..+..+..
T Consensus 95 ~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~------------------------l~~------~~~~~~~~ 143 (680)
T 1ziw_A 95 FCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNG------------------------LSS------TKLGTQVQ 143 (680)
T ss_dssp TCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSC------------------------CSC------CCCCSSSC
T ss_pred cCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCc------------------------ccc------cCchhhcc
Confidence 88888888888777 44444 346666666655221110 000 00111333
Q ss_pred CCCCCeEEEEeecCCCCCCchhhhhHHhhhccCCCCCCcceEEEEeeCCCCCCc-ccCCCCcCCeeEEEEeCCCCCCCCC
Q 002284 236 KKNLKVLMLEWTRSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPT-WLGYSLFSNLVTLKFQDCSMCTSMP 314 (943)
Q Consensus 236 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~L~~n~~~~~~~ 314 (943)
+++|++|++++|.++ .++. .+....+++|++|++++|.+.+..|
T Consensus 144 l~~L~~L~L~~n~l~-----------------------------------~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 188 (680)
T 1ziw_A 144 LENLQELLLSNNKIQ-----------------------------------ALKSEELDIFANSSLKKLELSSNQIKEFSP 188 (680)
T ss_dssp CTTCCEEECCSSCCC-----------------------------------CBCHHHHGGGTTCEESEEECTTCCCCCBCT
T ss_pred cccCCEEEccCCccc-----------------------------------ccCHHHhhccccccccEEECCCCcccccCh
Confidence 444455555444432 2221 1111124677777777777766665
Q ss_pred -CCCCCCCCCeeEEecCcCceeeCccccCCCCCCCCCCcceeecccccccccccccccCCccccCCc--ccEEeeccCCC
Q 002284 315 -SVGQLPSLKHLEVRGMSRVKRLGSEFYGNDSPIPFPCLETLHFAEMQEWEEWIPHGCSQEIEGFPK--LRELHIVRCSK 391 (943)
Q Consensus 315 -~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~--L~~L~l~~c~~ 391 (943)
.++.+++|+.|+++++............ ....++|+.|+++++. +... .+..+..++. |++|++++ ++
T Consensus 189 ~~~~~l~~L~~L~l~~~~l~~~~~~~~~~---~l~~~~L~~L~L~~n~-l~~~----~~~~~~~l~~~~L~~L~Ls~-n~ 259 (680)
T 1ziw_A 189 GCFHAIGRLFGLFLNNVQLGPSLTEKLCL---ELANTSIRNLSLSNSQ-LSTT----SNTTFLGLKWTNLTMLDLSY-NN 259 (680)
T ss_dssp TGGGGSSEECEEECTTCCCHHHHHHHHHH---HHTTSCCCEEECTTSC-CCEE----CTTTTGGGGGSCCCEEECTT-SC
T ss_pred hhhhhhhhhhhhhccccccChhhHHHHHH---HhhhccccEEEccCCc-cccc----ChhHhhccCcCCCCEEECCC-CC
Confidence 5666777777777665422111000000 0002344444444442 1111 1222333322 55555555 34
Q ss_pred ccCCCCCCCCCccEEEEeccCCCCccceEEeccCCceeeeccCcccchhhhccccccccCCCccccCCCCceeeeeEeec
Q 002284 392 LQGTLPTHLTLLDILVVQNFTSLPALCKLRIDRCKKVVWRSTTDCESQLYKDISNQMFLGGPLKLQLPKLDELDISIIID 471 (943)
Q Consensus 392 l~~~~p~~l~~L~~L~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~l~~L~~L~Ls~~~~ 471 (943)
+++..|.. +..+++|++|++++|. +.
T Consensus 260 l~~~~~~~-----------~~~l~~L~~L~L~~n~----------------------l~--------------------- 285 (680)
T 1ziw_A 260 LNVVGNDS-----------FAWLPQLEYFFLEYNN----------------------IQ--------------------- 285 (680)
T ss_dssp CCEECTTT-----------TTTCTTCCEEECCSCC----------------------BS---------------------
T ss_pred cCccCccc-----------ccCcccccEeeCCCCc----------------------cC---------------------
Confidence 43222221 2233333333333332 22
Q ss_pred CccccccchhhhhhcccccCeEEeecCCCcc-----cchhhhhhhcCccceeceEEEecCCCcCccchhccCCCCcCeee
Q 002284 472 GLSYIWQNETQLLQDIATLKRLKIERCPKLQ-----FLEEEDQWQFGLSFRLEHLELINCQDLEKLPKSLLSLSSLTEMR 546 (943)
Q Consensus 472 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~-----~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 546 (943)
...+..+.++++|+.|++++|..-. .++......|..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 286 ------~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 359 (680)
T 1ziw_A 286 ------HLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLS 359 (680)
T ss_dssp ------EECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEE
T ss_pred ------ccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEE
Confidence 2223334455555555555432111 11110011177788899999998887777777888889999999
Q ss_pred ccCCCC-CcccCCCCC----CCCccEEEEecCCCCCcCccccccCCCCCccEEEeecCCCcccccCc--CCCCCCceEEe
Q 002284 547 IHNCSS-LVSFPEAVL----PSQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLTYIAGV--QLPPSLKQLEI 619 (943)
Q Consensus 547 L~~n~~-l~~~~~~~~----~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~--~~~~~L~~L~l 619 (943)
+++|.. ...++...+ .++|+.|++++|...+..+.. +..+++|++|++++|.+.+.++.. ...++|++|++
T Consensus 360 Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L 437 (680)
T 1ziw_A 360 LSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA--FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYL 437 (680)
T ss_dssp CTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTT--TTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEEC
T ss_pred CCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhh--hhCCCCCCEEeCCCCcCccccCcccccCcccccEEec
Confidence 988863 233333322 257888888888865555554 347888888888888876555432 34456666666
Q ss_pred ccCcCccccccccCcccccccCCccceeeeecCCCcccccchhhHHHHhhhhhcCCCcccccEEEeecCCCc--hhhHhh
Q 002284 620 YNCDNLRTLTAEEGIHSSRRHTSLLECLEIHSCPSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKL--ESIVER 697 (943)
Q Consensus 620 ~~~~~L~~l~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~~~~l--~~~~~~ 697 (943)
++|. +..++.. .+..+ ++|+.|++++|... +.+|..
T Consensus 438 s~n~-l~~~~~~----------------------------------------~~~~~-~~L~~L~l~~n~l~~~~~~p~~ 475 (680)
T 1ziw_A 438 SYNK-YLQLTRN----------------------------------------SFALV-PSLQRLMLRRVALKNVDSSPSP 475 (680)
T ss_dssp CSCS-EEECCTT----------------------------------------TTTTC-TTCCEEECTTSCCBCTTCSSCT
T ss_pred CCCC-cceeChh----------------------------------------hhhcC-cccccchhccccccccccCCcc
Confidence 6663 2222110 01111 34556666555432 344555
Q ss_pred hcccccccEEEeeccCCcccccccccCCCCccEEeccCCCCCcccCc---------CCccccccceeeeccccCCccCCC
Q 002284 698 LDNKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPE---------GGLLSAKLKRLVIYGCKKLEALPE 768 (943)
Q Consensus 698 ~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~p~---------~~~~l~~L~~L~l~~~~~l~~~p~ 768 (943)
+.++++|+.|++++|.+.+..|..+.++++|++|++++|.. ..++. .+..+++|+.|++++|... .+|.
T Consensus 476 ~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~ 553 (680)
T 1ziw_A 476 FQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL-ARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPV 553 (680)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-GGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CCCT
T ss_pred cccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCc-cccchhhccCCcchhhcCCCCCCEEECCCCCCC-CCCH
Confidence 66666677777776666665555566667777777776643 22211 1344566666666666533 4443
Q ss_pred -cCCCCCCCCceeecCCCCCccccCCC-CCCCCcceEEecCCcchhccccccCCC-CCCCccEEEecC
Q 002284 769 -GMHNLSSLQYLTIGGVPSLLCFTEDG-LFPTNLHSLEIDGMKIWKSLMQLGGFH-RYTSLRRLAISG 833 (943)
Q Consensus 769 -~~~~l~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~~-~l~~L~~L~l~~ 833 (943)
.|..+++|++|++++|. ++.+|.+. ..+++|+.|++++|......+. .+. .+++|++|++++
T Consensus 554 ~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~~~~~~L~~l~l~~ 618 (680)
T 1ziw_A 554 EVFKDLFELKIIDLGLNN-LNTLPASVFNNQVSLKSLNLQKNLITSVEKK--VFGPAFRNLTELDMRF 618 (680)
T ss_dssp TTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCCCBCCHH--HHHHHHTTCSEEECTT
T ss_pred HHcccccCcceeECCCCC-CCcCCHhHhCCCCCCCEEECCCCcCCccChh--HhcccccccCEEEccC
Confidence 35666666666666554 33444433 2345555555555543322211 122 345555555555
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=9.5e-41 Score=393.24 Aligned_cols=83 Identities=10% Similarity=0.011 Sum_probs=54.6
Q ss_pred cCCeeEEEEeCCCCCCC-CCCCCCCCCCCeeEEecCcCceeeCccccCCCCCCCCCCcc--eeecccccccccccccccC
Q 002284 296 FSNLVTLKFQDCSMCTS-MPSVGQLPSLKHLEVRGMSRVKRLGSEFYGNDSPIPFPCLE--TLHFAEMQEWEEWIPHGCS 372 (943)
Q Consensus 296 l~~L~~L~L~~n~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~--~L~l~~~~~l~~~~~~~~~ 372 (943)
+++|++|++++|.+.+. .|.+..+++|++|++++|......+..+.. +++|+ .|++++|. +... .+
T Consensus 128 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~l~L~l~~n~-l~~~----~~ 196 (606)
T 3t6q_A 128 QKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSS------LQQATNLSLNLNGND-IAGI----EP 196 (606)
T ss_dssp CTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHT------TTTCCSEEEECTTCC-CCEE----CT
T ss_pred CCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhh------hcccceeEEecCCCc-cCcc----Ch
Confidence 67788888889988773 456667999999999999754433333333 66777 67777764 2221 12
Q ss_pred CccccCCcccEEeeccCC
Q 002284 373 QEIEGFPKLRELHIVRCS 390 (943)
Q Consensus 373 ~~~~~~~~L~~L~l~~c~ 390 (943)
. .....+|++|++++|.
T Consensus 197 ~-~~~~~~L~~L~l~~~~ 213 (606)
T 3t6q_A 197 G-AFDSAVFQSLNFGGTQ 213 (606)
T ss_dssp T-TTTTCEEEEEECTTCS
T ss_pred h-HhhhccccccccCCch
Confidence 2 2334577777777764
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.1e-41 Score=396.38 Aligned_cols=274 Identities=16% Similarity=0.121 Sum_probs=149.1
Q ss_pred hhcccccCeEEeecCCCcccchhhhhhhcCccceeceEEEecCCCcCccchhccCCCCcCeeeccCCCCCcccCCCCCCC
Q 002284 484 LQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPEAVLPS 563 (943)
Q Consensus 484 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~l~~~~~~~~~~ 563 (943)
+..+++|+.|++++|. ++.++ . +..+++|++|++++|.+ +.+| .+ .+++|++|++++|.....+ ....++
T Consensus 281 ~~~l~~L~~L~l~~~~-~~~l~-~----l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~-~~~~l~ 350 (606)
T 3vq2_A 281 FHCLANVSAMSLAGVS-IKYLE-D----VPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF-KKVALP 350 (606)
T ss_dssp CGGGTTCSEEEEESCC-CCCCC-C----CCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC-CCCCCT
T ss_pred cccCCCCCEEEecCcc-chhhh-h----ccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch-hhccCC
Confidence 3445555555555554 34444 1 56666777777777755 5666 33 6777777777777544444 223356
Q ss_pred CccEEEEecCCCCCc--CccccccCCCCCccEEEeecCCCcccccCcCCCCCCceEEeccCcCccccccccCcccccccC
Q 002284 564 QLRVISIWDSGALKF--LPEAWMLDNNSSLEILDIRHCHLLTYIAGVQLPPSLKQLEIYNCDNLRTLTAEEGIHSSRRHT 641 (943)
Q Consensus 564 ~L~~L~l~~~~~l~~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~ 641 (943)
+|++|++++|..... .+.. +..+++|++|++++|.+..........++|+.|++++|. +...+...
T Consensus 351 ~L~~L~ls~n~l~~~~~~~~~--~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~--------- 418 (606)
T 3vq2_A 351 SLSYLDLSRNALSFSGCCSYS--DLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHST-LKRVTEFS--------- 418 (606)
T ss_dssp TCCEEECCSSCEEEEEECCHH--HHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSE-EESTTTTT---------
T ss_pred CCCEEECcCCccCCCcchhhh--hccCCcccEeECCCCccccchhhccCCCCCCeeECCCCc-cCCccChh---------
Confidence 666666666663322 1333 235677777777776643322222333445555555542 11111000
Q ss_pred CccceeeeecCCCcccccchhhHHHHhhhhhcCCCcccccEEEeecCCCchhhHhhhcccccccEEEeeccCCcc-cccc
Q 002284 642 SLLECLEIHSCPSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKLESIVERLDNKISLEVIEIVSCENLK-MLPH 720 (943)
Q Consensus 642 ~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~-~~p~ 720 (943)
....+ ++|++|++++|...+..|..+.++++|++|++++|.+.+ .+|.
T Consensus 419 ------------------------------~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 467 (606)
T 3vq2_A 419 ------------------------------AFLSL-EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSN 467 (606)
T ss_dssp ------------------------------TTTTC-TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECS
T ss_pred ------------------------------hhhcc-ccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHH
Confidence 01111 355666666655555555556666666666666666555 3455
Q ss_pred cccCCCCccEEeccCCCCCcccCcCCccccccceeeeccccCCccCCCcCCCCCCCCceeecCCCCCccccCCCCCCC-C
Q 002284 721 GLHKLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVIYGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFTEDGLFPT-N 799 (943)
Q Consensus 721 ~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~-~ 799 (943)
.+..+++|++|++++|...+..|..+..+++|++|++++|...+..|..+..+++|++|++++|. ++.+|.....++ +
T Consensus 468 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~ 546 (606)
T 3vq2_A 468 VFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKS 546 (606)
T ss_dssp CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTT
T ss_pred hhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCHhHhhhccc
Confidence 56666666666666665444445555556666666666666555556666666666666666655 445555433333 4
Q ss_pred cceEEecCCcch
Q 002284 800 LHSLEIDGMKIW 811 (943)
Q Consensus 800 L~~L~l~~c~~l 811 (943)
|++|++++|+..
T Consensus 547 L~~l~l~~N~~~ 558 (606)
T 3vq2_A 547 LAFFNLTNNSVA 558 (606)
T ss_dssp CCEEECCSCCCC
T ss_pred CcEEEccCCCcc
Confidence 666666665543
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.7e-40 Score=391.19 Aligned_cols=107 Identities=17% Similarity=0.187 Sum_probs=81.3
Q ss_pred hccchhhhccCcccEEEecCcccccc-CccccCCCCCceeecCCCccccc-chhhhhccccceeecCCCcccccccHHHh
Q 002284 79 RSILPRLLKLQRLRVFSLRGYLISEV-PDSIGDLSYLRYLNLSGTQIRTL-PESVNKLYNLHTLLLEGCRELKKKCADMG 156 (943)
Q Consensus 79 ~~~~~~~~~l~~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~n~~~~~~p~~~~ 156 (943)
..+|.++. +.+++|+|++|.++.+ |.+|+++++|++|+|++|.+..+ |.+|+++++|++|++++|.+.+..|..|+
T Consensus 25 ~~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 102 (606)
T 3t6q_A 25 NEIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALS 102 (606)
T ss_dssp SSCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTS
T ss_pred ccCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhc
Confidence 34555554 3678888888888887 67888888888888888888877 67788888888888888876676777888
Q ss_pred ccccCceEEcCCCCCCccc-ccccccccccccc
Q 002284 157 NLIKLHHLNNSNTDSLEEM-PLGIGKLTCLLTL 188 (943)
Q Consensus 157 ~L~~L~~L~l~~n~~~~~~-p~~~~~L~~L~~L 188 (943)
++++|++|++++|. +..+ |..++++++|++|
T Consensus 103 ~l~~L~~L~L~~n~-i~~l~~~~~~~l~~L~~L 134 (606)
T 3t6q_A 103 GPKALKHLFFIQTG-ISSIDFIPLHNQKTLESL 134 (606)
T ss_dssp SCTTCCEEECTTSC-CSCGGGSCCTTCTTCCEE
T ss_pred ccccccEeeccccC-cccCCcchhccCCcccEE
Confidence 88888888888888 4444 4445555555555
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=8.7e-40 Score=385.05 Aligned_cols=286 Identities=13% Similarity=0.048 Sum_probs=166.2
Q ss_pred cCeEEeecCCCcccchhhhhhhcCccceeceEEEecCCCcCccchhccCCCCcCeeeccCCCCCcccCCCCCCCCccEEE
Q 002284 490 LKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPEAVLPSQLRVIS 569 (943)
Q Consensus 490 L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~l~~~~~~~~~~~L~~L~ 569 (943)
++.+.+..+..+...... +..+++|+.|++++|.. ..+| .+..+++|++|++++|.. +.+|.. .+++|++|+
T Consensus 263 l~~l~l~~~~~~~~~~~~----~~~l~~L~~L~l~~~~~-~~l~-~l~~~~~L~~L~l~~n~l-~~lp~~-~l~~L~~L~ 334 (606)
T 3vq2_A 263 IDEFRLTYTNDFSDDIVK----FHCLANVSAMSLAGVSI-KYLE-DVPKHFKWQSLSIIRCQL-KQFPTL-DLPFLKSLT 334 (606)
T ss_dssp EEEEEECCCTTCCGGGGS----CGGGTTCSEEEEESCCC-CCCC-CCCTTCCCSEEEEESCCC-SSCCCC-CCSSCCEEE
T ss_pred Hhheeccccccccccccc----cccCCCCCEEEecCccc-hhhh-hccccccCCEEEcccccC-cccccC-CCCccceee
Confidence 445555333334333322 67788888888888865 4566 777888888888888875 777755 678888888
Q ss_pred EecCCCCCcCccccccCCCCCccEEEeecCCCcccc--c-CcCCCCCCceEEeccCcCccccccccCcccccccCCccce
Q 002284 570 IWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLTYI--A-GVQLPPSLKQLEIYNCDNLRTLTAEEGIHSSRRHTSLLEC 646 (943)
Q Consensus 570 l~~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~--~-~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~L~~ 646 (943)
+++|......+ +..+++|++|++++|.+.+.. + ....+++|+.|++++|. +..++.
T Consensus 335 l~~n~~~~~~~----~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~---------------- 393 (606)
T 3vq2_A 335 LTMNKGSISFK----KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSA---------------- 393 (606)
T ss_dssp EESCSSCEECC----CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECC----------------
T ss_pred ccCCcCccchh----hccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccchh----------------
Confidence 88886554442 346788888888888654321 1 11233445555555542 222220
Q ss_pred eeeecCCCcccccchhhHHHHhhhhhcCCCcccccEEEeecCCCchhhH-hhhcccccccEEEeeccCCcccccccccCC
Q 002284 647 LEIHSCPSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKLESIV-ERLDNKISLEVIEIVSCENLKMLPHGLHKL 725 (943)
Q Consensus 647 L~i~~c~~l~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l 725 (943)
.+..+ ++|+.|++++|...+..+ ..+.++++|++|++++|.+.+..|..+.++
T Consensus 394 -------------------------~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 447 (606)
T 3vq2_A 394 -------------------------NFMGL-EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL 447 (606)
T ss_dssp -------------------------CCTTC-TTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTC
T ss_pred -------------------------hccCC-CCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCC
Confidence 01111 345666666655444444 345566666666666666666666666666
Q ss_pred CCccEEeccCCCCCc-ccCcCCccccccceeeeccccCCccCCCcCCCCCCCCceeecCCCCCccccCCCCCCCCcceEE
Q 002284 726 WHLQEIDIQDCENLV-SFPEGGLLSAKLKRLVIYGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFTEDGLFPTNLHSLE 804 (943)
Q Consensus 726 ~~L~~L~l~~~~~l~-~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 804 (943)
++|++|++++|...+ .+|..+..+++|++|++++|...+..|..+..+++|++|++++|......|.....+++|++|+
T Consensus 448 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 527 (606)
T 3vq2_A 448 TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLD 527 (606)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEE
T ss_pred CCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEE
Confidence 666666666664444 2455555566666666666665555555666666666666666654444444444455666666
Q ss_pred ecCCcchhccccccCCCCCC-CccEEEecC
Q 002284 805 IDGMKIWKSLMQLGGFHRYT-SLRRLAISG 833 (943)
Q Consensus 805 l~~c~~l~~~~~~~~~~~l~-~L~~L~l~~ 833 (943)
+++|... .++. .+..++ +|++|++++
T Consensus 528 l~~N~l~-~~p~--~~~~l~~~L~~l~l~~ 554 (606)
T 3vq2_A 528 CSFNRIE-TSKG--ILQHFPKSLAFFNLTN 554 (606)
T ss_dssp CTTSCCC-CEES--CGGGSCTTCCEEECCS
T ss_pred CCCCcCc-ccCH--hHhhhcccCcEEEccC
Confidence 6666533 2222 244444 356666655
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=9.7e-37 Score=370.45 Aligned_cols=518 Identities=15% Similarity=0.099 Sum_probs=268.5
Q ss_pred cCcccEEEecCcccccc-CccccCCCCCceeecCCC-ccccc-chhhhhccccceeecCCCcccccccHHHhccccCceE
Q 002284 88 LQRLRVFSLRGYLISEV-PDSIGDLSYLRYLNLSGT-QIRTL-PESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHL 164 (943)
Q Consensus 88 l~~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~Ls~n-~i~~l-p~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L 164 (943)
.+++++|||++|.++.+ |.+|.++++|++|+|++| .+..+ |.+|+++++|++|+|++|.+.+..|..|+++++|++|
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 46677777777777665 566777777777777777 34455 5667777777777777776555556667777777777
Q ss_pred EcCCCCCCccccccccccccccccCceEeccCCCCCcccccCcccccCceeecccccccCccchhhcccCCCCCCCeEEE
Q 002284 165 NNSNTDSLEEMPLGIGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGKKNLKVLML 244 (943)
Q Consensus 165 ~l~~n~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l 244 (943)
++++|.+.+.+|.. ..+..+++|+.|++
T Consensus 103 ~Ls~n~l~~~~~~~----------------------------------------------------~~~~~L~~L~~L~L 130 (844)
T 3j0a_A 103 RLYFCGLSDAVLKD----------------------------------------------------GYFRNLKALTRLDL 130 (844)
T ss_dssp ECTTCCCSSCCSTT----------------------------------------------------CCCSSCSSCCEEEE
T ss_pred eCcCCCCCcccccC----------------------------------------------------ccccccCCCCEEEC
Confidence 77777633323321 01334455556666
Q ss_pred EeecCCCCCCchhhhhHHhhhccCCCCCCcceEEEEeeCCCCCCcccCCCCcCCeeEEEEeCCCCCCCCC-CCCCC--CC
Q 002284 245 EWTRSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSMP-SVGQL--PS 321 (943)
Q Consensus 245 ~~n~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~l--~~ 321 (943)
++|.++.. ..+..+. .+++|++|++++|.+.+..+ .++.+ ++
T Consensus 131 s~N~l~~~---------------------------------~~~~~~~--~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~ 175 (844)
T 3j0a_A 131 SKNQIRSL---------------------------------YLHPSFG--KLNSLKSIDFSSNQIFLVCEHELEPLQGKT 175 (844)
T ss_dssp ESCCCCCC---------------------------------CCCGGGG--TCSSCCEEEEESSCCCCCCSGGGHHHHHCS
T ss_pred CCCccccc---------------------------------ccchhHh--hCCCCCEEECCCCcCCeeCHHHcccccCCc
Confidence 65554211 1122333 37888888888888877666 55555 78
Q ss_pred CCeeEEecCcCceeeCccccCCCCCCCCCCcceeecccccccccccccccCCccccCCcccEEeeccCCCccCCCCCCCC
Q 002284 322 LKHLEVRGMSRVKRLGSEFYGNDSPIPFPCLETLHFAEMQEWEEWIPHGCSQEIEGFPKLRELHIVRCSKLQGTLPTHLT 401 (943)
Q Consensus 322 L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~ 401 (943)
|+.|++++|......+..+.. + +..+. ...|++|++++ +++++.+|..+.
T Consensus 176 L~~L~L~~n~l~~~~~~~~~~------~----------------------~~~~~-~~~L~~L~Ls~-n~l~~~~~~~~~ 225 (844)
T 3j0a_A 176 LSFFSLAANSLYSRVSVDWGK------C----------------------MNPFR-NMVLEILDVSG-NGWTVDITGNFS 225 (844)
T ss_dssp SCCCEECCSBSCCCCCCCCCS------S----------------------SCTTT-TCCBSEEBCSS-CCSSTTTTSGGG
T ss_pred cceEECCCCccccccccchhh------c----------------------CCccc-cCceeEEecCC-CcCchhHHHHHH
Confidence 888888887643322211111 0 00111 12477777777 466655554332
Q ss_pred CccEEEEeccCCCCccceEEeccCCceeeeccCcccchhhhccccccccCCCccccCCCCceeeeeEeecCccccccchh
Q 002284 402 LLDILVVQNFTSLPALCKLRIDRCKKVVWRSTTDCESQLYKDISNQMFLGGPLKLQLPKLDELDISIIIDGLSYIWQNET 481 (943)
Q Consensus 402 ~L~~L~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~ 481 (943)
.. .....++.+.+..+.... +...+.+ .....
T Consensus 226 ~~--------l~~~~l~~L~l~~~~~~~-------------~~~~~~l---------------------------~~~~~ 257 (844)
T 3j0a_A 226 NA--------ISKSQAFSLILAHHIMGA-------------GFGFHNI---------------------------KDPDQ 257 (844)
T ss_dssp GT--------SCSCCBSEEECCSSCCBC-------------SSSCSSS---------------------------TTGGG
T ss_pred hh--------cCcccccceecccccccc-------------ccccccc---------------------------CCCCh
Confidence 11 112334444444221100 0001111 11111
Q ss_pred hhhhcc--cccCeEEeecCCCcccchhhhhhhcCccceeceEEEecCCCcCccchhccCCCCcCeeeccCCCCCcccCCC
Q 002284 482 QLLQDI--ATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPEA 559 (943)
Q Consensus 482 ~~~~~l--~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~l~~~~~~ 559 (943)
..+.++ ++|+.|++++|. +..+.... |..+++|+.|++++|.+.+..|..+..+++|++|++++|......+..
T Consensus 258 ~~f~~l~~~~L~~L~Ls~n~-l~~~~~~~---~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 333 (844)
T 3j0a_A 258 NTFAGLARSSVRHLDLSHGF-VFSLNSRV---FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSN 333 (844)
T ss_dssp TTTTTTTTSCCCEEECTTCC-CCEECSCC---SSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCS
T ss_pred hhhhccccCCccEEECCCCc-ccccChhh---hhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHH
Confidence 112221 344444444443 22222221 444555555555555444444444555555555555555422211211
Q ss_pred -CCCCCccEEEEecCCCCCcCccccccCCCCCccEEEeecCCCcccccCcCCCCCCceEEeccCcCccccccccCccccc
Q 002284 560 -VLPSQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLTYIAGVQLPPSLKQLEIYNCDNLRTLTAEEGIHSSR 638 (943)
Q Consensus 560 -~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~ 638 (943)
..+++|+.|++++|.. ..++... +.++++|++|++++|.+.+ ++ .+++|+.|+++++ ++..++.
T Consensus 334 ~~~l~~L~~L~L~~N~i-~~~~~~~-~~~l~~L~~L~Ls~N~l~~-i~---~~~~L~~L~l~~N-~l~~l~~-------- 398 (844)
T 3j0a_A 334 FYGLPKVAYIDLQKNHI-AIIQDQT-FKFLEKLQTLDLRDNALTT-IH---FIPSIPDIFLSGN-KLVTLPK-------- 398 (844)
T ss_dssp CSSCTTCCEEECCSCCC-CCCCSSC-SCSCCCCCEEEEETCCSCC-CS---SCCSCSEEEEESC-CCCCCCC--------
T ss_pred hcCCCCCCEEECCCCCC-CccChhh-hcCCCCCCEEECCCCCCCc-cc---CCCCcchhccCCC-Ccccccc--------
Confidence 1144555555555542 2222211 2345555666665554321 11 1344555555554 2222220
Q ss_pred ccCCccceeeeecCCCcccccchhhHHHHhhhhhcCCCcccccEEEeecCCCch-hhHhhhcccccccEEEeeccCCccc
Q 002284 639 RHTSLLECLEIHSCPSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKLE-SIVERLDNKISLEVIEIVSCENLKM 717 (943)
Q Consensus 639 ~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~~~~l~-~~~~~~~~l~~L~~L~l~~~~~~~~ 717 (943)
.+.+++.|++++|.... ..+..+.++++|+.|++++|.+.+.
T Consensus 399 -------------------------------------~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~ 441 (844)
T 3j0a_A 399 -------------------------------------INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSC 441 (844)
T ss_dssp -------------------------------------CCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCC
T ss_pred -------------------------------------cccccceeecccCccccCchhhhhhcCCccceeeCCCCccccc
Confidence 01245555555544322 1122345666777777777766554
Q ss_pred ccc-cccCCCCccEEeccCCCCC-----cccCcCCccccccceeeeccccCCccCCCcCCCCCCCCceeecCCCCCcccc
Q 002284 718 LPH-GLHKLWHLQEIDIQDCENL-----VSFPEGGLLSAKLKRLVIYGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFT 791 (943)
Q Consensus 718 ~p~-~~~~l~~L~~L~l~~~~~l-----~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~~ 791 (943)
.+. .+..+++|++|++++|... +..+..+..+++|+.|++++|...+..|..+..+++|++|++++|. ++.++
T Consensus 442 ~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~ 520 (844)
T 3j0a_A 442 SGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNR-LTVLS 520 (844)
T ss_dssp CSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCC-CSSCC
T ss_pred ccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCC-CCccC
Confidence 332 2445677777777777443 1222335556777777777777666556667777777777777764 55555
Q ss_pred CCCCCCCCcceEEecCCcchhccccccCCCCCCCccEEEecC
Q 002284 792 EDGLFPTNLHSLEIDGMKIWKSLMQLGGFHRYTSLRRLAISG 833 (943)
Q Consensus 792 ~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 833 (943)
.... .++|+.|++++|......+. .+++|+.|++++
T Consensus 521 ~~~~-~~~L~~L~Ls~N~l~~~~~~-----~~~~L~~l~l~~ 556 (844)
T 3j0a_A 521 HNDL-PANLEILDISRNQLLAPNPD-----VFVSLSVLDITH 556 (844)
T ss_dssp CCCC-CSCCCEEEEEEECCCCCCSC-----CCSSCCEEEEEE
T ss_pred hhhh-hccccEEECCCCcCCCCChh-----HhCCcCEEEecC
Confidence 5554 37777777777765544332 245677777765
No 10
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4.3e-37 Score=373.54 Aligned_cols=126 Identities=23% Similarity=0.306 Sum_probs=102.3
Q ss_pred ccccccEEeecccCCCCCCcchhccchhhhccCcccEEEecCcc-cccc-CccccCCCCCceeecCCCccccc-chhhhh
Q 002284 57 DIQHLRTLLPVTLLSSRPGYLARSILPRLLKLQRLRVFSLRGYL-ISEV-PDSIGDLSYLRYLNLSGTQIRTL-PESVNK 133 (943)
Q Consensus 57 ~~~~Lr~L~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~-i~~l-p~~~~~l~~L~~L~Ls~n~i~~l-p~~i~~ 133 (943)
-.+++++|.+.. |.+.+..|.++.++++|++|+|++|. +..+ |.+|+++++|++|+|++|.|..+ |.+|++
T Consensus 22 lp~~l~~LdLs~------N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~ 95 (844)
T 3j0a_A 22 VLNTTERLLLSF------NYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQG 95 (844)
T ss_dssp SCTTCCEEEEES------CCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCS
T ss_pred CCCCcCEEECCC------CcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccC
Confidence 347899997754 45565556666699999999999995 6677 78899999999999999999988 789999
Q ss_pred ccccceeecCCCcccccccHH--HhccccCceEEcCCCCCCcccc-cccccccccccc
Q 002284 134 LYNLHTLLLEGCRELKKKCAD--MGNLIKLHHLNNSNTDSLEEMP-LGIGKLTCLLTL 188 (943)
Q Consensus 134 L~~L~~L~L~~n~~~~~~p~~--~~~L~~L~~L~l~~n~~~~~~p-~~~~~L~~L~~L 188 (943)
+++|++|+|++|.+.+..|.. |+++++|++|++++|.+.+..| ..|+++++|++|
T Consensus 96 l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L 153 (844)
T 3j0a_A 96 LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSI 153 (844)
T ss_dssp CSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEE
T ss_pred CcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEE
Confidence 999999999999877766665 9999999999999998433323 346666666555
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.1e-36 Score=351.43 Aligned_cols=94 Identities=22% Similarity=0.224 Sum_probs=67.4
Q ss_pred hccchhhhccCcccEEEecCcccccc-CccccCCCCCceeecCCCcccccc-hhhhhccccceeecCCCcccccccHHHh
Q 002284 79 RSILPRLLKLQRLRVFSLRGYLISEV-PDSIGDLSYLRYLNLSGTQIRTLP-ESVNKLYNLHTLLLEGCRELKKKCADMG 156 (943)
Q Consensus 79 ~~~~~~~~~l~~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~n~~~~~~p~~~~ 156 (943)
..+|..+. +++++|++++|.++.+ +.+|.++++|++|+|++|+++.+| ..|+++++|++|++++|.+.+..|..|+
T Consensus 20 ~~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 97 (570)
T 2z63_A 20 YKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 97 (570)
T ss_dssp SSCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT
T ss_pred cccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhc
Confidence 34555443 4677888888887776 456788888888888888887774 5677888888888888765555556688
Q ss_pred ccccCceEEcCCCCCCccc
Q 002284 157 NLIKLHHLNNSNTDSLEEM 175 (943)
Q Consensus 157 ~L~~L~~L~l~~n~~~~~~ 175 (943)
++++|++|++++|. +..+
T Consensus 98 ~l~~L~~L~L~~n~-l~~l 115 (570)
T 2z63_A 98 GLSSLQKLVAVETN-LASL 115 (570)
T ss_dssp TCTTCCEEECTTSC-CCCS
T ss_pred Cccccccccccccc-cccC
Confidence 88888888888776 4443
No 12
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.1e-35 Score=347.79 Aligned_cols=123 Identities=23% Similarity=0.219 Sum_probs=81.5
Q ss_pred ccccEEeecccCCCCCCcchhccchhhhccCcccEEEecCcccccc-CccccCCCCCceeecCCCcccccc-hhhhhccc
Q 002284 59 QHLRTLLPVTLLSSRPGYLARSILPRLLKLQRLRVFSLRGYLISEV-PDSIGDLSYLRYLNLSGTQIRTLP-ESVNKLYN 136 (943)
Q Consensus 59 ~~Lr~L~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~Ls~n~i~~lp-~~i~~L~~ 136 (943)
+++++|.+.+ |.+.+..+..|.++++|++|+|++|.++.+ |..|+++++||+|+|++|.++.+| .+|+++++
T Consensus 28 ~~l~~L~Ls~------n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (570)
T 2z63_A 28 FSTKNLDLSF------NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101 (570)
T ss_dssp SSCCEEECCS------CCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred ccccEEEccC------CccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccc
Confidence 3566665533 344433334445777888888887777776 456777778888888888777774 56777788
Q ss_pred cceeecCCCcccccccH-HHhccccCceEEcCCCCCCc-ccccccccccccccc
Q 002284 137 LHTLLLEGCRELKKKCA-DMGNLIKLHHLNNSNTDSLE-EMPLGIGKLTCLLTL 188 (943)
Q Consensus 137 L~~L~L~~n~~~~~~p~-~~~~L~~L~~L~l~~n~~~~-~~p~~~~~L~~L~~L 188 (943)
|++|++++|. +..+|. .|+++++|++|++++|.+.. .+|..++++++|++|
T Consensus 102 L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L 154 (570)
T 2z63_A 102 LQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154 (570)
T ss_dssp CCEEECTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred cccccccccc-cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEE
Confidence 8888887775 333333 47777788888887777333 356666666666655
No 13
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=9.5e-37 Score=357.66 Aligned_cols=124 Identities=15% Similarity=0.150 Sum_probs=87.8
Q ss_pred ccccEEeecccCCCCCCcchhccchhhhccCcccEEEecCccccccC---------------------------------
Q 002284 59 QHLRTLLPVTLLSSRPGYLARSILPRLLKLQRLRVFSLRGYLISEVP--------------------------------- 105 (943)
Q Consensus 59 ~~Lr~L~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~lp--------------------------------- 105 (943)
.+++.|.+ +++.+.+.+|+++.++++|++|+|++|.+..-+
T Consensus 81 ~~V~~L~L------~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~ 154 (636)
T 4eco_A 81 GRVTGLSL------EGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDP 154 (636)
T ss_dssp CCEEEEEC------TTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCG
T ss_pred CCEEEEEe------cCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCc
Confidence 35666654 344667888888888888888888888642111
Q ss_pred -cccc-------------------CCCCCceeecC--CCcccccchhhhhccccceeecCCCccccc-------------
Q 002284 106 -DSIG-------------------DLSYLRYLNLS--GTQIRTLPESVNKLYNLHTLLLEGCRELKK------------- 150 (943)
Q Consensus 106 -~~~~-------------------~l~~L~~L~Ls--~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~------------- 150 (943)
..+. ....++.+.+. +|+++.||++|+++++|++|+|++|.+.+.
T Consensus 155 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~ 234 (636)
T 4eco_A 155 REDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEY 234 (636)
T ss_dssp GGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHH
T ss_pred hhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccch
Confidence 1111 11122222222 567778888899999999999999876664
Q ss_pred ----ccHHHh--ccccCceEEcCCCCCCcccccccccccccccc
Q 002284 151 ----KCADMG--NLIKLHHLNNSNTDSLEEMPLGIGKLTCLLTL 188 (943)
Q Consensus 151 ----~p~~~~--~L~~L~~L~l~~n~~~~~~p~~~~~L~~L~~L 188 (943)
+|..++ ++++|++|++++|.+.+.+|..++++++|++|
T Consensus 235 ~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 278 (636)
T 4eco_A 235 AQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLI 278 (636)
T ss_dssp HHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEE
T ss_pred hcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEE
Confidence 888888 99999999999998888888878777777766
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.1e-35 Score=343.45 Aligned_cols=210 Identities=19% Similarity=0.150 Sum_probs=148.1
Q ss_pred hccchhhhccCcccEEEecCcccccc-CccccCCCCCceeecCCCcccccc-hhhhhccccceeecCCCcccccccHHHh
Q 002284 79 RSILPRLLKLQRLRVFSLRGYLISEV-PDSIGDLSYLRYLNLSGTQIRTLP-ESVNKLYNLHTLLLEGCRELKKKCADMG 156 (943)
Q Consensus 79 ~~~~~~~~~l~~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~n~~~~~~p~~~~ 156 (943)
..+|++++ ++|++|++++|.++.+ |.+|+++++|++|+|++|+++.+| .+|+++++|++|++++|.+.+..|..|+
T Consensus 18 ~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 95 (549)
T 2z81_A 18 TSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFG 95 (549)
T ss_dssp SSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHT
T ss_pred ccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhc
Confidence 46677665 7899999999999887 678999999999999999999885 6899999999999999986666666699
Q ss_pred ccccCceEEcCCCCCCc-cccccccccccccccCceEeccCCCCCcccccCcccccCceeecccccccCccchhhcccCC
Q 002284 157 NLIKLHHLNNSNTDSLE-EMPLGIGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDG 235 (943)
Q Consensus 157 ~L~~L~~L~l~~n~~~~-~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~ 235 (943)
++++|++|++++|.+.+ .+|..++++++|++|+...+... .......+.+
T Consensus 96 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~-----------------------------~~~~~~~~~~ 146 (549)
T 2z81_A 96 PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF-----------------------------SEIRRIDFAG 146 (549)
T ss_dssp TCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSC-----------------------------CEECTTTTTT
T ss_pred cCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccc-----------------------------cccCHhhhhc
Confidence 99999999999998333 34667888888887744332100 0011123666
Q ss_pred CCCCCeEEEEeecCCCCCCchhhhhHHhhhccCCCCCCcceEEEEeeCCCCCCcccCCCCcCCeeEEEEeCCCCCCCC--
Q 002284 236 KKNLKVLMLEWTRSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSM-- 313 (943)
Q Consensus 236 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~~~~~~-- 313 (943)
+++|+.|++++|.+++. ....+..+++|+.|+++++....+|.++. ..+++|++|++++|.+.+..
T Consensus 147 l~~L~~L~L~~n~l~~~-----------~~~~l~~l~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~ 214 (549)
T 2z81_A 147 LTSLNELEIKALSLRNY-----------QSQSLKSIRDIHHLTLHLSESAFLLEIFA-DILSSVRYLELRDTNLARFQFS 214 (549)
T ss_dssp CCEEEEEEEEETTCCEE-----------CTTTTTTCSEEEEEEEECSBSTTHHHHHH-HSTTTBSEEEEESCBCTTCCCC
T ss_pred ccccCeeeccCCccccc-----------ChhhhhccccCceEecccCcccccchhhH-hhcccccEEEccCCcccccccc
Confidence 77888888888877422 22345566677777777766666665543 23667777777777765531
Q ss_pred --CCCCCCCCCCeeEEecCc
Q 002284 314 --PSVGQLPSLKHLEVRGMS 331 (943)
Q Consensus 314 --~~~~~l~~L~~L~L~~~~ 331 (943)
+....+++|+.|++++|.
T Consensus 215 ~~~~~~~~~~L~~L~l~~n~ 234 (549)
T 2z81_A 215 PLPVDEVSSPMKKLAFRGSV 234 (549)
T ss_dssp CCSSCCCCCCCCEEEEESCE
T ss_pred ccchhhhhhcccceeccccc
Confidence 123345566666666654
No 15
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.2e-34 Score=334.80 Aligned_cols=483 Identities=16% Similarity=0.131 Sum_probs=271.1
Q ss_pred CcccEEEecCccccccCccccCCCCCceeecCCCccccc-chhhhhccccceeecCCCcccccccHHHhccccCceEEcC
Q 002284 89 QRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTL-PESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNS 167 (943)
Q Consensus 89 ~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l~ 167 (943)
+...+.|.+++.++.+|..+. ++|++|+|++|+++.+ |.+|+++++|++|++++|.+.+..|..|+++++|++|+++
T Consensus 5 ~~~~~c~~~~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls 82 (549)
T 2z81_A 5 DASGVCDGRSRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS 82 (549)
T ss_dssp CTTSEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred CCCceEECCCCccccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECC
Confidence 444557888999999998775 7999999999999988 5789999999999999998767667789999999999999
Q ss_pred CCCCCcccccc-ccccccccccCceEeccCCCCCcccccCcccccCceeecccccccCccchhhcccCCCCCCCeEEEEe
Q 002284 168 NTDSLEEMPLG-IGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGKKNLKVLMLEW 246 (943)
Q Consensus 168 ~n~~~~~~p~~-~~~L~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 246 (943)
+|. +..+|.. |+++++|+ +|++++
T Consensus 83 ~n~-l~~~~~~~~~~l~~L~------------------------------------------------------~L~Ls~ 107 (549)
T 2z81_A 83 DNH-LSSLSSSWFGPLSSLK------------------------------------------------------YLNLMG 107 (549)
T ss_dssp TSC-CCSCCHHHHTTCTTCC------------------------------------------------------EEECTT
T ss_pred CCc-cCccCHHHhccCCCCc------------------------------------------------------EEECCC
Confidence 998 4444432 44444433 333333
Q ss_pred ecCCCCCCchhhhhHHhhhccCCCCCCcceEEEEeeCCCCCCcccCCCCcCCeeEEEEeCCCCCCCCC--CCCCCCCCCe
Q 002284 247 TRSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSMP--SVGQLPSLKH 324 (943)
Q Consensus 247 n~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~~~~~~~--~~~~l~~L~~ 324 (943)
|.++. ...|..+. .+++|++|++++|...+.+| .++.+++|++
T Consensus 108 n~l~~---------------------------------~~~~~~~~--~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 152 (549)
T 2z81_A 108 NPYQT---------------------------------LGVTSLFP--NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNE 152 (549)
T ss_dssp CCCSS---------------------------------SCSSCSCT--TCTTCCEEEEEESSSCCEECTTTTTTCCEEEE
T ss_pred Ccccc---------------------------------cchhhhhh--ccCCccEEECCCCccccccCHhhhhcccccCe
Confidence 33310 01122232 26777777777777444443 6777778888
Q ss_pred eEEecCcCceeeCccccCCCCCCCCCCcceeecccccccccccccccCCccccCCcccEEeeccCCCccCCC--CCCCCC
Q 002284 325 LEVRGMSRVKRLGSEFYGNDSPIPFPCLETLHFAEMQEWEEWIPHGCSQEIEGFPKLRELHIVRCSKLQGTL--PTHLTL 402 (943)
Q Consensus 325 L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~--p~~l~~ 402 (943)
|++++|......+..+.. +++|++|+++.+.. .. . ....+..+++|++|++++ +++++.. |..+
T Consensus 153 L~L~~n~l~~~~~~~l~~------l~~L~~L~l~~n~~-~~-~---~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~-- 218 (549)
T 2z81_A 153 LEIKALSLRNYQSQSLKS------IRDIHHLTLHLSES-AF-L---LEIFADILSSVRYLELRD-TNLARFQFSPLPV-- 218 (549)
T ss_dssp EEEEETTCCEECTTTTTT------CSEEEEEEEECSBS-TT-H---HHHHHHSTTTBSEEEEES-CBCTTCCCCCCSS--
T ss_pred eeccCCcccccChhhhhc------cccCceEecccCcc-cc-c---chhhHhhcccccEEEccC-Cccccccccccch--
Confidence 888777644433332222 45555555554431 00 0 000112345555555555 3443210 0000
Q ss_pred ccEEEEeccCCCCccceEEeccCCceeeeccCcccchhhhccccccccCCCccccCCCCceeeeeEeecCccccccchhh
Q 002284 403 LDILVVQNFTSLPALCKLRIDRCKKVVWRSTTDCESQLYKDISNQMFLGGPLKLQLPKLDELDISIIIDGLSYIWQNETQ 482 (943)
Q Consensus 403 L~~L~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~ 482 (943)
.. .+++|+.|+++
T Consensus 219 --------~~--------------------------------------------~~~~L~~L~l~--------------- 231 (549)
T 2z81_A 219 --------DE--------------------------------------------VSSPMKKLAFR--------------- 231 (549)
T ss_dssp --------CC--------------------------------------------CCCCCCEEEEE---------------
T ss_pred --------hh--------------------------------------------hhhcccceecc---------------
Confidence 01 12223333332
Q ss_pred hhhcccccCeEEeecCCCcccchhhhhhhcCccceeceEEEecCCCcCc------cchhccCCCCcCeeeccCCCCCccc
Q 002284 483 LLQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEK------LPKSLLSLSSLTEMRIHNCSSLVSF 556 (943)
Q Consensus 483 ~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~------~~~~~~~l~~L~~L~L~~n~~l~~~ 556 (943)
+|......+......+..+++|+.+++++|...+. ....+..+++|+.|++.++......
T Consensus 232 --------------~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~ 297 (549)
T 2z81_A 232 --------------GSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFY 297 (549)
T ss_dssp --------------SCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGG
T ss_pred --------------ccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhh
Confidence 22100000000000023344455555555433221 0112344566666666665422111
Q ss_pred CCC------CCCCCccEEEEecCCCCCcCccccccCCCCCccEEEeecCCCcccccCcCCCCCCceEEeccCcCcccccc
Q 002284 557 PEA------VLPSQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLTYIAGVQLPPSLKQLEIYNCDNLRTLTA 630 (943)
Q Consensus 557 ~~~------~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~ 630 (943)
... ...++|+.|++++|. ++.+|..+ ++.+++|++|++++|.+.+.++...
T Consensus 298 ~~~~l~~~~~~~~~L~~L~l~~n~-l~~ip~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~--------------------- 354 (549)
T 2z81_A 298 LFYDLSTVYSLLEKVKRITVENSK-VFLVPCSF-SQHLKSLEFLDLSENLMVEEYLKNS--------------------- 354 (549)
T ss_dssp GSCCCCHHHHHSTTCCEEEEESSC-CCCCCHHH-HHHCTTCCEEECCSSCCCHHHHHHH---------------------
T ss_pred hcccchhhhhhcccceEEEeccCc-cccCCHHH-HhcCccccEEEccCCccccccccch---------------------
Confidence 000 113456666666665 44555443 1246666666666666544322100
Q ss_pred ccCcccccccCCccceeeeecCCCcccccchhhHHHHhhhhhcCCCcccccEEEeecCCCchhh--HhhhcccccccEEE
Q 002284 631 EEGIHSSRRHTSLLECLEIHSCPSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKLESI--VERLDNKISLEVIE 708 (943)
Q Consensus 631 ~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~~~~l~~~--~~~~~~l~~L~~L~ 708 (943)
. ..+.+ ++|+.|++++|...+.. +..+..+++|++|+
T Consensus 355 --~--------------------------------------~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~ 393 (549)
T 2z81_A 355 --A--------------------------------------CKGAW-PSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLD 393 (549)
T ss_dssp --T--------------------------------------CTTSS-TTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEE
T ss_pred --h--------------------------------------hhhcc-ccCcEEEccCCcccccccchhhhhcCCCCCEEE
Confidence 0 00111 34666666665433221 13466777788888
Q ss_pred eeccCCcccccccccCCCCccEEeccCCCCCcccCcCCccccccceeeeccccCCccCCCcCCCCCCCCceeecCCCCCc
Q 002284 709 IVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVIYGCKKLEALPEGMHNLSSLQYLTIGGVPSLL 788 (943)
Q Consensus 709 l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~ 788 (943)
+++|.+. .+|..+..+++|++|++++|. +..+|..+. ++|++|++++|...+. + ..+++|++|++++|. ++
T Consensus 394 Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~-l~~l~~~~~--~~L~~L~Ls~N~l~~~-~---~~l~~L~~L~Ls~N~-l~ 464 (549)
T 2z81_A 394 ISRNTFH-PMPDSCQWPEKMRFLNLSSTG-IRVVKTCIP--QTLEVLDVSNNNLDSF-S---LFLPRLQELYISRNK-LK 464 (549)
T ss_dssp CTTCCCC-CCCSCCCCCTTCCEEECTTSC-CSCCCTTSC--TTCSEEECCSSCCSCC-C---CCCTTCCEEECCSSC-CS
T ss_pred CCCCCCc-cCChhhcccccccEEECCCCC-cccccchhc--CCceEEECCCCChhhh-c---ccCChhcEEECCCCc-cC
Confidence 8877655 567777778888888888884 555655432 4788888888765442 2 467788888888875 45
Q ss_pred cccCCCCCCCCcceEEecCCcchhccccccCCCCCCCccEEEecCC
Q 002284 789 CFTEDGLFPTNLHSLEIDGMKIWKSLMQLGGFHRYTSLRRLAISGC 834 (943)
Q Consensus 789 ~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c 834 (943)
.+|.. ..+++|++|++++|......+ ..+..+++|++|+++++
T Consensus 465 ~ip~~-~~l~~L~~L~Ls~N~l~~~~~--~~~~~l~~L~~L~l~~N 507 (549)
T 2z81_A 465 TLPDA-SLFPVLLVMKISRNQLKSVPD--GIFDRLTSLQKIWLHTN 507 (549)
T ss_dssp SCCCG-GGCTTCCEEECCSSCCCCCCT--TGGGGCTTCCEEECCSS
T ss_pred cCCCc-ccCccCCEEecCCCccCCcCH--HHHhcCcccCEEEecCC
Confidence 66653 336777777777776544332 24566777777777773
No 16
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.1e-34 Score=329.79 Aligned_cols=112 Identities=15% Similarity=0.068 Sum_probs=59.3
Q ss_pred HhhhcccccccEEEeeccCCccccccc-ccCCCCccEEeccCCCCCcccCcCCccccccceeeeccccCCccCCCcCCCC
Q 002284 695 VERLDNKISLEVIEIVSCENLKMLPHG-LHKLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVIYGCKKLEALPEGMHNL 773 (943)
Q Consensus 695 ~~~~~~l~~L~~L~l~~~~~~~~~p~~-~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l 773 (943)
|..+..+++|++|++++|.+.+.+|.. +..+++|++|++++|...+.+|..+. ++|+.|++++|. +..+|.++..+
T Consensus 367 ~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~-l~~ip~~~~~l 443 (520)
T 2z7x_B 367 AEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNK-IKSIPKQVVKL 443 (520)
T ss_dssp HHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSC-CCCCCGGGGGC
T ss_pred hHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCc-ccccchhhhcC
Confidence 344455555555555555555544432 45556666666666654444444332 456666666654 33555555566
Q ss_pred CCCCceeecCCCCCccccCC-CCCCCCcceEEecCCcc
Q 002284 774 SSLQYLTIGGVPSLLCFTED-GLFPTNLHSLEIDGMKI 810 (943)
Q Consensus 774 ~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~c~~ 810 (943)
++|++|++++|. ++.+|.. ...+++|++|++++|+.
T Consensus 444 ~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 444 EALQELNVASNQ-LKSVPDGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CCCCEEECCCCc-CCccCHHHhccCCcccEEECcCCCC
Confidence 666666666654 3345544 23345555555555553
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=6.7e-34 Score=337.47 Aligned_cols=207 Identities=14% Similarity=0.092 Sum_probs=129.7
Q ss_pred ccccEEeecccCCCCCCcchhccchhhhccCcccEEEe-cCcccccc-Cc------------------------------
Q 002284 59 QHLRTLLPVTLLSSRPGYLARSILPRLLKLQRLRVFSL-RGYLISEV-PD------------------------------ 106 (943)
Q Consensus 59 ~~Lr~L~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L-~~n~i~~l-p~------------------------------ 106 (943)
.++..|.+ +++.+.+.+|+++.++++|++|+| ++|.+... |-
T Consensus 323 ~~V~~L~L------s~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~ 396 (876)
T 4ecn_A 323 GRVTGLSL------AGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQ 396 (876)
T ss_dssp SCEEEEEC------TTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCG
T ss_pred CCEEEEEC------ccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCc
Confidence 35666654 345678888888889999999999 66654221 10
Q ss_pred ---------------------cccCCCCCceeecCC--CcccccchhhhhccccceeecCCCcccc--------------
Q 002284 107 ---------------------SIGDLSYLRYLNLSG--TQIRTLPESVNKLYNLHTLLLEGCRELK-------------- 149 (943)
Q Consensus 107 ---------------------~~~~l~~L~~L~Ls~--n~i~~lp~~i~~L~~L~~L~L~~n~~~~-------------- 149 (943)
.......++.+.+.. |+++.||.+|+++++|++|+|++|.+.+
T Consensus 397 ~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~ 476 (876)
T 4ecn_A 397 RLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDY 476 (876)
T ss_dssp GGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHH
T ss_pred chhhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCccccccccccccc
Confidence 001222344444443 6777788888888888888888887666
Q ss_pred ---cccHHHh--ccccCceEEcCCCCCCccccccccccccccccCceEeccCCCCCcccccCcccccCceeecccccccC
Q 002284 150 ---KKCADMG--NLIKLHHLNNSNTDSLEEMPLGIGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKY 224 (943)
Q Consensus 150 ---~~p~~~~--~L~~L~~L~l~~n~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~ 224 (943)
.+|..++ ++++|++|++++|.+.+.+|..++++++|+.|+...+.. +.
T Consensus 477 ~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~-----------------------ls---- 529 (876)
T 4ecn_A 477 AKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG-----------------------IS---- 529 (876)
T ss_dssp HHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTT-----------------------SC----
T ss_pred ccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCC-----------------------cc----
Confidence 3788766 888888888888887888887787777777663211100 00
Q ss_pred ccchhhcccCCCCCCCeEEEEeecCCCCCCchhhhhHHhhhc-cCCCCCCcceEEEEeeCCCCCCc--ccCCCCcCCeeE
Q 002284 225 VGDAMEAQLDGKKNLKVLMLEWTRSTNGLSSREAQTEKGVLD-MLKPHRSLEQFCISGFGGKKFPT--WLGYSLFSNLVT 301 (943)
Q Consensus 225 ~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~-~l~~~~~L~~L~l~~~~~~~~p~--~~~~~~l~~L~~ 301 (943)
...++..+ ..+. .+..+++|+.|+++++....+|. ++.. +++|++
T Consensus 530 -g~~iP~~i-----------------------------~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~--L~~L~~ 577 (876)
T 4ecn_A 530 -AAQLKADW-----------------------------TRLADDEDTGPKIQIFYMGYNNLEEFPASASLQK--MVKLGL 577 (876)
T ss_dssp -HHHHHHHH-----------------------------HHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTT--CTTCCE
T ss_pred -cccchHHH-----------------------------HhhhhcccccCCccEEEeeCCcCCccCChhhhhc--CCCCCE
Confidence 00000000 0111 23334455555555555556666 5543 777778
Q ss_pred EEEeCCCCCCCCCCCCCCCCCCeeEEecCc
Q 002284 302 LKFQDCSMCTSMPSVGQLPSLKHLEVRGMS 331 (943)
Q Consensus 302 L~L~~n~~~~~~~~~~~l~~L~~L~L~~~~ 331 (943)
|++++|.+. .+|.++.+++|+.|++++|.
T Consensus 578 L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~ 606 (876)
T 4ecn_A 578 LDCVHNKVR-HLEAFGTNVKLTDLKLDYNQ 606 (876)
T ss_dssp EECTTSCCC-BCCCCCTTSEESEEECCSSC
T ss_pred EECCCCCcc-cchhhcCCCcceEEECcCCc
Confidence 888777776 55577777777777777775
No 18
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.5e-34 Score=338.97 Aligned_cols=188 Identities=15% Similarity=0.212 Sum_probs=102.9
Q ss_pred CcccEEEecCcccc-ccCccccCCCCCceeecCCCccc-------------ccchhhhhccccceeecCCCcccccccHH
Q 002284 89 QRLRVFSLRGYLIS-EVPDSIGDLSYLRYLNLSGTQIR-------------TLPESVNKLYNLHTLLLEGCRELKKKCAD 154 (943)
Q Consensus 89 ~~L~~L~L~~n~i~-~lp~~~~~l~~L~~L~Ls~n~i~-------------~lp~~i~~L~~L~~L~L~~n~~~~~~p~~ 154 (943)
.+++.|+|+++.+. .+|.+|++|++|++|+|++|.+. .+|... +.+|+ +++++|...+..|..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED 157 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence 57888888888875 56888888888888888888652 344433 55566 666665544555544
Q ss_pred Hhc-cccCceEEcCCCCCCccccccccccccccccCceEeccCCCCCcccccCcccccCceeecccccccCccchhhccc
Q 002284 155 MGN-LIKLHHLNNSNTDSLEEMPLGIGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQL 233 (943)
Q Consensus 155 ~~~-L~~L~~L~l~~n~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l 233 (943)
+.. +.++..+++.... +.. .....++.+ .+.... ..... ++..+
T Consensus 158 ~~~~~~~l~~~~l~~~~-~~~-----~~~~~l~~l--------------------------~l~~~~--n~l~~-ip~~l 202 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKS-IKK-----SSRITLKDT--------------------------QIGQLS--NNITF-VSKAV 202 (636)
T ss_dssp SCHHHHHHHHHCTTSCC-CCC-----CCCCCCCTT--------------------------TTTCCS--CEEEE-ECGGG
T ss_pred HHHHHHHHhhcCccccc-ccc-----ccccchhhh--------------------------hhcccc--CCCcc-CCHHH
Confidence 432 2233333332221 000 000111111 000000 00011 34446
Q ss_pred CCCCCCCeEEEEeecCCCCCCchhhhhHHhhhccCCCCCCcceEEEEeeCCCCCCcccCCCCcCCeeEEEEeCCCCCCCC
Q 002284 234 DGKKNLKVLMLEWTRSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSM 313 (943)
Q Consensus 234 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~~~~~~ 313 (943)
..+++|++|++++|.+++... ...+.+. . ..+....+|..+....+++|++|++++|.+.+.+
T Consensus 203 ~~l~~L~~L~Ls~n~l~~~~~----------~~~~~~~-~------~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~ 265 (636)
T 4eco_A 203 MRLTKLRQFYMGNSPFVAENI----------CEAWENE-N------SEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKL 265 (636)
T ss_dssp GGCTTCCEEEEESCCCCGGGB----------SSSCSCT-T------SHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSC
T ss_pred hcccCCCEEECcCCccccccc----------ccccccc-c------cchhcccCchhhhhcccCCCCEEEecCCcCCccC
Confidence 677777888887777642000 0000000 0 0000001666665113889999999999988888
Q ss_pred C-CCCCCCCCCeeEEecCc
Q 002284 314 P-SVGQLPSLKHLEVRGMS 331 (943)
Q Consensus 314 ~-~~~~l~~L~~L~L~~~~ 331 (943)
| .++.+++|++|++++|+
T Consensus 266 p~~l~~l~~L~~L~Ls~n~ 284 (636)
T 4eco_A 266 PTFLKALPEMQLINVACNR 284 (636)
T ss_dssp CTTTTTCSSCCEEECTTCT
T ss_pred hHHHhcCCCCCEEECcCCC
Confidence 8 78899999999999886
No 19
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.7e-33 Score=331.59 Aligned_cols=522 Identities=16% Similarity=0.071 Sum_probs=272.9
Q ss_pred hccchhhhccCcccEEEecCccccccC-ccccCCCCCceeecCCCcccccc-hhhhhccccceeecCCCcccccccHHHh
Q 002284 79 RSILPRLLKLQRLRVFSLRGYLISEVP-DSIGDLSYLRYLNLSGTQIRTLP-ESVNKLYNLHTLLLEGCRELKKKCADMG 156 (943)
Q Consensus 79 ~~~~~~~~~l~~L~~L~L~~n~i~~lp-~~~~~l~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~n~~~~~~p~~~~ 156 (943)
..+|+++- +.+++|||++|.|+.+| .+|.++++||+|+|++|+|+.+| .+|++|++|++|+|++|.+.+..|..|+
T Consensus 44 ~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~ 121 (635)
T 4g8a_A 44 YKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 121 (635)
T ss_dssp SSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGT
T ss_pred CccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhc
Confidence 34555442 46788888888888885 57888888888888888888885 4688888888888888864333344588
Q ss_pred ccccCceEEcCCCCCCccccc-cccccccccccCceEeccCCCCCcccccCcccccCceeecccccccCccchhhcccCC
Q 002284 157 NLIKLHHLNNSNTDSLEEMPL-GIGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDG 235 (943)
Q Consensus 157 ~L~~L~~L~l~~n~~~~~~p~-~~~~L~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~ 235 (943)
++++|++|++++|. +..+|. .|+++++|++|+...+. +... ..+..+..
T Consensus 122 ~L~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~~L~Ls~N~------------------------l~~~-----~~~~~~~~ 171 (635)
T 4g8a_A 122 GLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNL------------------------IQSF-----KLPEYFSN 171 (635)
T ss_dssp TCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSC------------------------CCCC-----CCCGGGGG
T ss_pred CCCCCCEEECCCCc-CCCCChhhhhcCcccCeeccccCc------------------------cccC-----CCchhhcc
Confidence 88888888888887 556665 47888888877432221 1100 11222456
Q ss_pred CCCCCeEEEEeecCCCCCCchhhhhHHhhhccCCCCC-CcceEEEEeeCCCCCCcccCCCCcCCeeEEEEeCCCCCCCCC
Q 002284 236 KKNLKVLMLEWTRSTNGLSSREAQTEKGVLDMLKPHR-SLEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSMP 314 (943)
Q Consensus 236 ~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~-~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~~~~~~~ 314 (943)
+++|+.|++++|.++...... +..+...+ ....++++.+....++..... ...++.+++.+|......+
T Consensus 172 l~~L~~L~L~~N~l~~~~~~~--------l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~--~~~~~~l~l~~n~~~~~~~ 241 (635)
T 4g8a_A 172 LTNLEHLDLSSNKIQSIYCTD--------LRVLHQMPLLNLSLDLSLNPMNFIQPGAFK--EIRLHKLTLRNNFDSLNVM 241 (635)
T ss_dssp CTTCCEEECCSSCCCEECGGG--------GHHHHTCTTCCCEEECTTCCCCEECTTTTT--TCEEEEEEEESCCSSHHHH
T ss_pred chhhhhhcccCcccccccccc--------ccchhhhhhhhhhhhcccCcccccCccccc--chhhhhhhhhccccccccc
Confidence 677888888877765332211 11111111 122344444444444333221 3445666666664432211
Q ss_pred --CCCCCCCCCeeEEecCcCceeeCccccCCCCCCCCCCcceeecccccccccccccccCCccccCCcccEEeeccCCCc
Q 002284 315 --SVGQLPSLKHLEVRGMSRVKRLGSEFYGNDSPIPFPCLETLHFAEMQEWEEWIPHGCSQEIEGFPKLRELHIVRCSKL 392 (943)
Q Consensus 315 --~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l 392 (943)
.+..++.++...+..+..... ..++.. ....+.....+....+.. ...
T Consensus 242 ~~~~~~l~~l~~~~l~~~~~~~~--------------~~l~~~---------------~~~~~~~~~~l~~~~l~~-~~~ 291 (635)
T 4g8a_A 242 KTCIQGLAGLEVHRLVLGEFRNE--------------GNLEKF---------------DKSALEGLCNLTIEEFRL-AYL 291 (635)
T ss_dssp HHHHHTTTTCEEEEEEEECCTTS--------------CCCSCC---------------CTTTTGGGGGSEEEEEEE-ECC
T ss_pred chhhcCCcccccccccccccccc--------------cccccc---------------cccccccccchhhhhhhh-hhh
Confidence 333444444444432211000 000000 011122233333333332 111
Q ss_pred c---CCCCCCCCCccEEEEeccCCCCccceEEeccCCceeeeccCcccchhhhccccccccCCCccccCCCCceeeeeEe
Q 002284 393 Q---GTLPTHLTLLDILVVQNFTSLPALCKLRIDRCKKVVWRSTTDCESQLYKDISNQMFLGGPLKLQLPKLDELDISII 469 (943)
Q Consensus 393 ~---~~~p~~l~~L~~L~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~l~~L~~L~Ls~~ 469 (943)
. ..++.. +..+..++.+.+.++.............++.+++++|.+.+.+.
T Consensus 292 ~~~~~~~~~~-----------~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------- 345 (635)
T 4g8a_A 292 DYYLDGIIDL-----------FNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT--------------- 345 (635)
T ss_dssp CSCEEECTTT-----------TGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCC---------------
T ss_pred cccccchhhh-----------hhhhcccccccccccccccccccccchhhhhhhcccccccCcCc---------------
Confidence 1 001110 23344555555555544333333333333444444443332211
Q ss_pred ecCccccccchhhhhhcccccCeEEeecCCCcccchhhhhhhcCccceeceEEEecCCCcC--ccchhccCCCCcCeeec
Q 002284 470 IDGLSYIWQNETQLLQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLE--KLPKSLLSLSSLTEMRI 547 (943)
Q Consensus 470 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~L 547 (943)
..++.|+.+.+.++... .... ...+++|+.|++++|.... ..+..+..+.+|+++++
T Consensus 346 ---------------~~l~~L~~l~l~~n~~~-~~~~-----~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~ 404 (635)
T 4g8a_A 346 ---------------LKLKSLKRLTFTSNKGG-NAFS-----EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDL 404 (635)
T ss_dssp ---------------CBCTTCCEEEEESCCSC-CBCC-----CCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEEC
T ss_pred ---------------ccchhhhhcccccccCC-CCcc-----cccccccccchhhccccccccccccchhhhhhhhhhhc
Confidence 12344444555444321 1111 3455666666666665432 23445556666777776
Q ss_pred cCCCCCcccCCCCCCCCccEEEEecCCCCCcCccccccCCCCCccEEEeecCCCcccccCc-CCCCCCceEEeccCcCcc
Q 002284 548 HNCSSLVSFPEAVLPSQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLTYIAGV-QLPPSLKQLEIYNCDNLR 626 (943)
Q Consensus 548 ~~n~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~~L~~L~l~~~~~L~ 626 (943)
..+......+....+++|+.+++.++......+... +..+++++.+++++|......+.. ...
T Consensus 405 ~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~-~~~l~~l~~l~ls~n~l~~~~~~~~~~~--------------- 468 (635)
T 4g8a_A 405 SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSV-FLSLRNLIYLDISHTHTRVAFNGIFNGL--------------- 468 (635)
T ss_dssp CSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCT-TTTCTTCCEEECTTSCCEECCTTTTTTC---------------
T ss_pred cccccccccccccccccccchhhhhccccccccccc-cccccccccccccccccccccccccccc---------------
Confidence 666533322222335556666665555333333222 345566666666666533222111 111
Q ss_pred ccccccCcccccccCCccceeeeecCCCcccccchhhHHHHhhhhhcCCCcccccEEEeecCCCchh-hHhhhccccccc
Q 002284 627 TLTAEEGIHSSRRHTSLLECLEIHSCPSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKLES-IVERLDNKISLE 705 (943)
Q Consensus 627 ~l~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~~~~l~~-~~~~~~~l~~L~ 705 (943)
++++.|++++|...+. .|..+..+++|+
T Consensus 469 ---------------------------------------------------~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~ 497 (635)
T 4g8a_A 469 ---------------------------------------------------SSLEVLKMAGNSFQENFLPDIFTELRNLT 497 (635)
T ss_dssp ---------------------------------------------------TTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred ---------------------------------------------------hhhhhhhhhhcccccccCchhhhhccccC
Confidence 3455666665554432 344566667777
Q ss_pred EEEeeccCCcccccccccCCCCccEEeccCCCCCcccCcCCccccccceeeeccccCCccCCCcCCCC-CCCCceeecCC
Q 002284 706 VIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVIYGCKKLEALPEGMHNL-SSLQYLTIGGV 784 (943)
Q Consensus 706 ~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l-~~L~~L~l~~~ 784 (943)
+|++++|++.+..|..|.++++|++|+|++|...+..|..+..+++|++|++++|+..+..|..+..+ ++|++|++++|
T Consensus 498 ~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~N 577 (635)
T 4g8a_A 498 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 577 (635)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTC
T ss_pred EEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCC
Confidence 77777777776667777777777777777774333333445567777777777777666666666666 46777777776
Q ss_pred CC
Q 002284 785 PS 786 (943)
Q Consensus 785 ~~ 786 (943)
|.
T Consensus 578 p~ 579 (635)
T 4g8a_A 578 DF 579 (635)
T ss_dssp CB
T ss_pred CC
Confidence 63
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.5e-33 Score=334.51 Aligned_cols=33 Identities=15% Similarity=0.103 Sum_probs=25.9
Q ss_pred CCceeEEEEEeccCccccccccccccccccEEee
Q 002284 33 SRNLHHLSYIRGDYDGVKRFEDLYDIQHLRTLLP 66 (943)
Q Consensus 33 ~~~~~~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~ 66 (943)
.++|++|.+..+.+....+ +.+.++++||+|.+
T Consensus 322 ~~~V~~L~Ls~~~L~G~ip-~~l~~L~~L~~LdL 354 (876)
T 4ecn_A 322 NGRVTGLSLAGFGAKGRVP-DAIGQLTELKVLSF 354 (876)
T ss_dssp TSCEEEEECTTTCCEEEEC-GGGGGCTTCCEEES
T ss_pred CCCEEEEECccCCCCCcCc-hHHhccccceEeee
Confidence 5789999998776654432 57789999999988
No 21
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.2e-32 Score=324.82 Aligned_cols=537 Identities=17% Similarity=0.162 Sum_probs=270.5
Q ss_pred cEEEecCccccccCccccCCCCCceeecCCCcccccc-hhhhhccccceeecCCCcccccccHHHhccccCceEEcCCCC
Q 002284 92 RVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLP-ESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNTD 170 (943)
Q Consensus 92 ~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l~~n~ 170 (943)
++.+.++.+++.+|..+. .++++|||++|+|+.+| .+|+++++|++|+|++|.+.+..|..|++|++|++|++++|+
T Consensus 34 ~~~~c~~~~l~~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~ 111 (635)
T 4g8a_A 34 ITYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 111 (635)
T ss_dssp TEEECTTSCCSSCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred CEEECCCCCcCccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc
Confidence 456777778999998774 48999999999999996 589999999999999997555556679999999999999999
Q ss_pred CCcccccc-ccccccccccCceEeccCCCCCcccccCcccccCceeecccccccCccchhhcccCCCCCCCeEEEEeecC
Q 002284 171 SLEEMPLG-IGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGKKNLKVLMLEWTRS 249 (943)
Q Consensus 171 ~~~~~p~~-~~~L~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~ 249 (943)
+..+|.+ |+++++|++|+...+ .+..+ ....+.++++|++|++++|.+
T Consensus 112 -l~~l~~~~f~~L~~L~~L~Ls~N------------------------~l~~l------~~~~~~~L~~L~~L~Ls~N~l 160 (635)
T 4g8a_A 112 -IQSLALGAFSGLSSLQKLVAVET------------------------NLASL------ENFPIGHLKTLKELNVAHNLI 160 (635)
T ss_dssp -CCEECGGGGTTCTTCCEEECTTS------------------------CCCCS------TTCCCTTCTTCCEEECCSSCC
T ss_pred -CCCCCHHHhcCCCCCCEEECCCC------------------------cCCCC------ChhhhhcCcccCeeccccCcc
Confidence 6777654 677777666622111 00000 001133444444444444443
Q ss_pred CCCCCchhhhhHHhhhccCCCCCCcceEEEEeeCCCCCCcccCCCCcCCeeEEEEeCCCCCCCCC-CCCCCCCCC----e
Q 002284 250 TNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSMP-SVGQLPSLK----H 324 (943)
Q Consensus 250 ~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~l~~L~----~ 324 (943)
+. ...|..+.. +++|++|++++|.+.+..+ .+..+.+++ .
T Consensus 161 ~~---------------------------------~~~~~~~~~--l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~ 205 (635)
T 4g8a_A 161 QS---------------------------------FKLPEYFSN--LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 205 (635)
T ss_dssp CC---------------------------------CCCCGGGGG--CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCE
T ss_pred cc---------------------------------CCCchhhcc--chhhhhhcccCccccccccccccchhhhhhhhhh
Confidence 21 122333322 5666666666666655444 333333222 3
Q ss_pred eEEecCcCceeeCccccCCCCCCCCCCcceeecccccccccccccccCCccccCCcccEEeeccCCCccCCCCCCCCCcc
Q 002284 325 LEVRGMSRVKRLGSEFYGNDSPIPFPCLETLHFAEMQEWEEWIPHGCSQEIEGFPKLRELHIVRCSKLQGTLPTHLTLLD 404 (943)
Q Consensus 325 L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~ 404 (943)
++++.|.. ..++..... ...++.+.+.++...... .+..+..++.++...+.. ....+.
T Consensus 206 ~~ls~n~l-~~i~~~~~~------~~~~~~l~l~~n~~~~~~----~~~~~~~l~~l~~~~l~~-~~~~~~--------- 264 (635)
T 4g8a_A 206 LDLSLNPM-NFIQPGAFK------EIRLHKLTLRNNFDSLNV----MKTCIQGLAGLEVHRLVL-GEFRNE--------- 264 (635)
T ss_dssp EECTTCCC-CEECTTTTT------TCEEEEEEEESCCSSHHH----HHHHHHTTTTCEEEEEEE-ECCTTS---------
T ss_pred hhcccCcc-cccCccccc------chhhhhhhhhcccccccc----cchhhcCCcccccccccc-cccccc---------
Confidence 44444432 222111111 122333333332110000 011122233333332221 000000
Q ss_pred EEEEeccCCCCccceEEeccCCceeeeccCcccchhhhccccccccCCCccccCCCCceeeeeEeecCccccccchhhhh
Q 002284 405 ILVVQNFTSLPALCKLRIDRCKKVVWRSTTDCESQLYKDISNQMFLGGPLKLQLPKLDELDISIIIDGLSYIWQNETQLL 484 (943)
Q Consensus 405 ~L~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~ 484 (943)
..++... .........+...++.. +............+
T Consensus 265 ----------~~l~~~~------------------------------~~~~~~~~~l~~~~l~~--~~~~~~~~~~~~~~ 302 (635)
T 4g8a_A 265 ----------GNLEKFD------------------------------KSALEGLCNLTIEEFRL--AYLDYYLDGIIDLF 302 (635)
T ss_dssp ----------CCCSCCC------------------------------TTTTGGGGGSEEEEEEE--ECCCSCEEECTTTT
T ss_pred ----------ccccccc------------------------------ccccccccchhhhhhhh--hhhcccccchhhhh
Confidence 0000000 00000111122222210 00001111111223
Q ss_pred hcccccCeEEeecCCCcccchhhhhhhcCccceeceEEEecCCCcCccchhccCCCCcCeeeccCCCCCcccCCCCCCCC
Q 002284 485 QDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPEAVLPSQ 564 (943)
Q Consensus 485 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~l~~~~~~~~~~~ 564 (943)
..+.+++.+.+.++. +..+.. +....+|+.|++.+|......+ ..+..|+.+++.+|.. ...+....+++
T Consensus 303 ~~~~~l~~l~~~~~~-~~~~~~-----~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~-~~~~~~~~l~~ 372 (635)
T 4g8a_A 303 NCLTNVSSFSLVSVT-IERVKD-----FSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKG-GNAFSEVDLPS 372 (635)
T ss_dssp GGGTTCSEEEEESCE-EEECGG-----GGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCS-CCBCCCCBCTT
T ss_pred hhhcccccccccccc-cccccc-----cccchhhhhhhcccccccCcCc---ccchhhhhcccccccC-CCCcccccccc
Confidence 445555566555553 222221 4445566666666664432222 2345566666666643 22233333556
Q ss_pred ccEEEEecCCCCCcCccccccCCCCCccEEEeecCCCcccccCcCCCCCCceEEeccCcCccccccccCcccccccCCcc
Q 002284 565 LRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLTYIAGVQLPPSLKQLEIYNCDNLRTLTAEEGIHSSRRHTSLL 644 (943)
Q Consensus 565 L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~L 644 (943)
|+.+++++|..............+.+|+++++..+......+.....++|+.+++..+......+..
T Consensus 373 L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~------------- 439 (635)
T 4g8a_A 373 LEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFS------------- 439 (635)
T ss_dssp CCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSC-------------
T ss_pred cccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccc-------------
Confidence 6666666665322111111122456666666666654433333333444555555444322111100
Q ss_pred ceeeeecCCCcccccchhhHHHHhhhhhcCCCcccccEEEeecCCCchhhHhhhcccccccEEEeeccCCcc-ccccccc
Q 002284 645 ECLEIHSCPSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKLESIVERLDNKISLEVIEIVSCENLK-MLPHGLH 723 (943)
Q Consensus 645 ~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~-~~p~~~~ 723 (943)
.+..+ .+++.++++.|......+..+..+++|+.|++++|...+ ..|..+.
T Consensus 440 ---------------------------~~~~l-~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~ 491 (635)
T 4g8a_A 440 ---------------------------VFLSL-RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 491 (635)
T ss_dssp ---------------------------TTTTC-TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT
T ss_pred ---------------------------ccccc-cccccccccccccccccccccccchhhhhhhhhhcccccccCchhhh
Confidence 01111 356666666666555555666667777777777776443 3456666
Q ss_pred CCCCccEEeccCCCCCcccCcCCccccccceeeeccccCCccCCCcCCCCCCCCceeecCCCCCccccCCCCCC-CCcce
Q 002284 724 KLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVIYGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFTEDGLFP-TNLHS 802 (943)
Q Consensus 724 ~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~-~~L~~ 802 (943)
.+++|++|+|++|...+..|..+..+++|++|++++|...+..|..+..+++|++|++++|......|.....+ ++|+.
T Consensus 492 ~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~ 571 (635)
T 4g8a_A 492 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAF 571 (635)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCE
T ss_pred hccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCE
Confidence 77777777777775444445556667777777777776555555566777777777777766444434333333 56666
Q ss_pred EEecCCcc
Q 002284 803 LEIDGMKI 810 (943)
Q Consensus 803 L~l~~c~~ 810 (943)
|++++|+.
T Consensus 572 L~L~~Np~ 579 (635)
T 4g8a_A 572 LNLTQNDF 579 (635)
T ss_dssp EECTTCCB
T ss_pred EEeeCCCC
Confidence 66666653
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.8e-33 Score=320.85 Aligned_cols=442 Identities=17% Similarity=0.097 Sum_probs=254.8
Q ss_pred ccchhhhccCcccEEEecCccccccC-ccccCCCCCceeecCCCccccc-chhhhhccccceeecCCCcccccccHHHhc
Q 002284 80 SILPRLLKLQRLRVFSLRGYLISEVP-DSIGDLSYLRYLNLSGTQIRTL-PESVNKLYNLHTLLLEGCRELKKKCADMGN 157 (943)
Q Consensus 80 ~~~~~~~~l~~L~~L~L~~n~i~~lp-~~~~~l~~L~~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~n~~~~~~p~~~~~ 157 (943)
.+|.+++ ++|++|++++|.++.++ .+|.++++|++|+|++|+|+.+ |..|+++++|++|++++|. +..+|.. .
T Consensus 14 ~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~--~ 88 (520)
T 2z7x_B 14 HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK-LVKISCH--P 88 (520)
T ss_dssp SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC-CCEEECC--C
T ss_pred ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc-eeecCcc--c
Confidence 3454444 55666666666655553 4555666666666666666555 4555666666666666654 3344444 5
Q ss_pred cccCceEEcCCCCCCc-cccccccccccccccCceEeccCCCCCcccccCcccccCceeecccccccCccchhhcccCCC
Q 002284 158 LIKLHHLNNSNTDSLE-EMPLGIGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGK 236 (943)
Q Consensus 158 L~~L~~L~l~~n~~~~-~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~~ 236 (943)
+++|++|++++|.+.+ .+|..++++++|++|
T Consensus 89 l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L------------------------------------------------ 120 (520)
T 2z7x_B 89 TVNLKHLDLSFNAFDALPICKEFGNMSQLKFL------------------------------------------------ 120 (520)
T ss_dssp CCCCSEEECCSSCCSSCCCCGGGGGCTTCCEE------------------------------------------------
T ss_pred cCCccEEeccCCccccccchhhhccCCcceEE------------------------------------------------
Confidence 5666666666665322 234445555555544
Q ss_pred CCCCeEEEEeecCCCCCCchhhhhHHhhhccCCCCCCc--ceEEEEeeCC---CCCCcccCCCCcC-CeeEEEEeCCCCC
Q 002284 237 KNLKVLMLEWTRSTNGLSSREAQTEKGVLDMLKPHRSL--EQFCISGFGG---KKFPTWLGYSLFS-NLVTLKFQDCSMC 310 (943)
Q Consensus 237 ~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~~L--~~L~l~~~~~---~~~p~~~~~~~l~-~L~~L~L~~n~~~ 310 (943)
++++|.++. ..+..+++| +.|+++++.. ...|.++.. +. +...+++++|.+.
T Consensus 121 ------~L~~n~l~~--------------~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~--l~~~~l~l~l~~n~~~ 178 (520)
T 2z7x_B 121 ------GLSTTHLEK--------------SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQD--FNTESLHIVFPTNKEF 178 (520)
T ss_dssp ------EEEESSCCG--------------GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTT--CCEEEEEEECCSSSCC
T ss_pred ------EecCcccch--------------hhccccccceeeEEEeecccccccccccccccc--cccceEEEEeccCcch
Confidence 333333310 011111222 4444444332 223433332 21 2345566667666
Q ss_pred CCCC--CCCCCCCCCeeEEecCc-------CceeeCccccCCCCCCCCCCcceeecccccccccccccccCCccccCCcc
Q 002284 311 TSMP--SVGQLPSLKHLEVRGMS-------RVKRLGSEFYGNDSPIPFPCLETLHFAEMQEWEEWIPHGCSQEIEGFPKL 381 (943)
Q Consensus 311 ~~~~--~~~~l~~L~~L~L~~~~-------~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L 381 (943)
+.++ .+..+++|+.|++++|. ..+.++ .+. .+++|+.|++.++........+..+ ....++|
T Consensus 179 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~------~l~~L~~L~l~~~~l~~~~~~~~~~--~~~~~~L 249 (520)
T 2z7x_B 179 HFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQ------TNPKLSNLTLNNIETTWNSFIRILQ--LVWHTTV 249 (520)
T ss_dssp CCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGG------GCTTCCEEEEEEEEEEHHHHHHHHH--HHHTSSC
T ss_pred hhhhhhhhhcccceeeccccccccccccceeecchh-hhc------cccchhhccccccccCHHHHHHHHH--HhhhCcc
Confidence 6555 56677777777777764 111111 222 2677777777766422211110000 0124578
Q ss_pred cEEeeccCCCccCCCCCCCCCccEEEEeccCCCCccceEEeccCCceee-eccCcc---cchhhhccccccccCCCcccc
Q 002284 382 RELHIVRCSKLQGTLPTHLTLLDILVVQNFTSLPALCKLRIDRCKKVVW-RSTTDC---ESQLYKDISNQMFLGGPLKLQ 457 (943)
Q Consensus 382 ~~L~l~~c~~l~~~~p~~l~~L~~L~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~---~~l~~l~ls~n~l~~~~~~~~ 457 (943)
++|++++ ++++|.+|..+.... ...++.|+.+++++|....+ ..+..+ .+++.+++++|.+.+.+....
T Consensus 250 ~~L~l~~-n~l~~~~p~~~~~~~------~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 322 (520)
T 2z7x_B 250 WYFSISN-VKLQGQLDFRDFDYS------GTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSK 322 (520)
T ss_dssp SEEEEEE-EEEESCCCCCCCCCC------SCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSS
T ss_pred cEEEeec-ccccCccccchhhcc------cccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhh
Confidence 8888888 577777776551100 14455666666666654111 111111 347777777777766654457
Q ss_pred CCCCceeeeeEeecCccccccchhhhhhcccccCeEEeecCCCcccchhhhhhhcCccceeceEEEecCCCcCccch-hc
Q 002284 458 LPKLDELDISIIIDGLSYIWQNETQLLQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPK-SL 536 (943)
Q Consensus 458 l~~L~~L~Ls~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~ 536 (943)
+++|++|+++ .+.+....+..+..+++|+.|++++|. ++.++... ..+..+++|++|++++|.+.+.+|. .+
T Consensus 323 l~~L~~L~Ls-----~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~-~~~~~l~~L~~L~Ls~N~l~~~l~~~~~ 395 (520)
T 2z7x_B 323 ISPFLHLDFS-----NNLLTDTVFENCGHLTELETLILQMNQ-LKELSKIA-EMTTQMKSLQQLDISQNSVSYDEKKGDC 395 (520)
T ss_dssp CCCCCEEECC-----SSCCCTTTTTTCCCCSSCCEEECCSSC-CCBHHHHH-HHHTTCTTCCEEECCSSCCBCCGGGCSC
T ss_pred CCcccEEEeE-----CCccChhhhhhhccCCCCCEEEccCCc-cCccccch-HHHhhCCCCCEEECCCCcCCcccccchh
Confidence 7788888887 333444444566778888888888885 55433211 1177888888888888877765665 37
Q ss_pred cCCCCcCeeeccCCCCCcccCCCCCCCCccEEEEecCCCCCcCccccccCCCCCccEEEeecCCCcccccCc--CCCCCC
Q 002284 537 LSLSSLTEMRIHNCSSLVSFPEAVLPSQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLTYIAGV--QLPPSL 614 (943)
Q Consensus 537 ~~l~~L~~L~L~~n~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~--~~~~~L 614 (943)
..+++|++|++++|...+.++.. ++++|++|++++|. ++.+|..+. .+++|++|++++|++. .+|.. ...++|
T Consensus 396 ~~l~~L~~L~Ls~N~l~~~~~~~-l~~~L~~L~Ls~N~-l~~ip~~~~--~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L 470 (520)
T 2z7x_B 396 SWTKSLLSLNMSSNILTDTIFRC-LPPRIKVLDLHSNK-IKSIPKQVV--KLEALQELNVASNQLK-SVPDGIFDRLTSL 470 (520)
T ss_dssp CCCTTCCEEECCSSCCCGGGGGS-CCTTCCEEECCSSC-CCCCCGGGG--GCTTCCEEECCSSCCC-CCCTTTTTTCTTC
T ss_pred ccCccCCEEECcCCCCCcchhhh-hcccCCEEECCCCc-ccccchhhh--cCCCCCEEECCCCcCC-ccCHHHhccCCcc
Confidence 77888888888888765554432 23788888888887 447776643 7888888888888765 45542 445678
Q ss_pred ceEEeccCcC
Q 002284 615 KQLEIYNCDN 624 (943)
Q Consensus 615 ~~L~l~~~~~ 624 (943)
+.|++++++-
T Consensus 471 ~~L~l~~N~~ 480 (520)
T 2z7x_B 471 QKIWLHTNPW 480 (520)
T ss_dssp CEEECCSSCB
T ss_pred cEEECcCCCC
Confidence 8888888753
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.98 E-value=1.7e-31 Score=310.24 Aligned_cols=438 Identities=18% Similarity=0.112 Sum_probs=239.0
Q ss_pred ccchhhhccCcccEEEecCccccccC-ccccCCCCCceeecCCCccccc-chhhhhccccceeecCCCcccccccHHHhc
Q 002284 80 SILPRLLKLQRLRVFSLRGYLISEVP-DSIGDLSYLRYLNLSGTQIRTL-PESVNKLYNLHTLLLEGCRELKKKCADMGN 157 (943)
Q Consensus 80 ~~~~~~~~l~~L~~L~L~~n~i~~lp-~~~~~l~~L~~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~n~~~~~~p~~~~~ 157 (943)
.+|.+++ ++|++|++++|.++.+| .+|.++++|++|+|++|+|+.+ |.+|+++++|++|++++|. +..+|.. .
T Consensus 45 ~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~--~ 119 (562)
T 3a79_B 45 HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR-LQNISCC--P 119 (562)
T ss_dssp SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC-CCEECSC--C
T ss_pred cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc-CCccCcc--c
Confidence 4666554 67777777777777764 5677777777777777777776 5667777777777777775 4456655 6
Q ss_pred cccCceEEcCCCCCCccc--cccccccccccccCceEeccCCCCCcccccCcccccCceeecccccccCccchhhcccCC
Q 002284 158 LIKLHHLNNSNTDSLEEM--PLGIGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDG 235 (943)
Q Consensus 158 L~~L~~L~l~~n~~~~~~--p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~ 235 (943)
+++|++|++++|. +..+ |..++++++|++|+...+ .+.. . .+..
T Consensus 120 l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n------------------------~l~~-----~----~~~~ 165 (562)
T 3a79_B 120 MASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAA------------------------KFRQ-----L----DLLP 165 (562)
T ss_dssp CTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECS------------------------BCCT-----T----TTGG
T ss_pred cccCCEEECCCCC-ccccCchHhhcccCcccEEecCCC------------------------cccc-----C----chhh
Confidence 7777777777777 4443 345666666655522111 1100 0 0112
Q ss_pred CCCC--CeEEEEeecC--CCCCCchhhhhHHhhhccCCCCCCcceEEEEeeCCCCCCcccCCCCcCCeeEEEEeCCCCCC
Q 002284 236 KKNL--KVLMLEWTRS--TNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCT 311 (943)
Q Consensus 236 ~~~L--~~L~l~~n~~--~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~~~~ 311 (943)
+++| +.|++++|.+ + ...|.++..-.. ..-.+++++|.+.+
T Consensus 166 l~~L~L~~L~L~~n~l~~~----------------------------------~~~~~~l~~l~~-~~l~l~l~~n~~~~ 210 (562)
T 3a79_B 166 VAHLHLSCILLDLVSYHIK----------------------------------GGETESLQIPNT-TVLHLVFHPNSLFS 210 (562)
T ss_dssp GTTSCEEEEEEEESSCCCC----------------------------------SSSCCEEEECCE-EEEEEEECSSSCCC
T ss_pred hhhceeeEEEeeccccccc----------------------------------ccCcccccccCc-ceEEEEecCccchh
Confidence 2222 5555555444 2 122333322111 12245667777666
Q ss_pred CCC--CCCCCCCCCeeEEecCcC----ceeeCccccCCCCCCCCCCcceeecccccccccccccccCCccccCCcccEEe
Q 002284 312 SMP--SVGQLPSLKHLEVRGMSR----VKRLGSEFYGNDSPIPFPCLETLHFAEMQEWEEWIPHGCSQEIEGFPKLRELH 385 (943)
Q Consensus 312 ~~~--~~~~l~~L~~L~L~~~~~----~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~ 385 (943)
.++ .+..+++|+.|++++|.. +......+.+ +++|+.|++.++..-.....+. +. ....++|++|+
T Consensus 211 ~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~------l~~L~~L~L~~~~l~~~~~~~~-~~-~~~~~~L~~L~ 282 (562)
T 3a79_B 211 VQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTR------GPTLLNVTLQHIETTWKCSVKL-FQ-FFWPRPVEYLN 282 (562)
T ss_dssp CCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHS------CSSCEEEEEEEEEECHHHHHHH-HH-HHTTSSEEEEE
T ss_pred hhhhhcccccceEEEecccccccccchHHHHHHHHhc------cCcceEEEecCCcCcHHHHHHH-HH-hhhcccccEEE
Confidence 555 556677788888877631 1111111222 6677777777654211111100 01 11245899999
Q ss_pred eccCCCccCCCCCCC-----CCccEEEEeccCCCCccceEEeccCCceee-eccC---cccchhhhccccccccCCCccc
Q 002284 386 IVRCSKLQGTLPTHL-----TLLDILVVQNFTSLPALCKLRIDRCKKVVW-RSTT---DCESQLYKDISNQMFLGGPLKL 456 (943)
Q Consensus 386 l~~c~~l~~~~p~~l-----~~L~~L~~~~~~~l~~L~~L~l~~~~~~~~-~~~~---~~~~l~~l~ls~n~l~~~~~~~ 456 (943)
+++ ++++|.+|..+ ..++.|.+.+ +..+....+ ..+. ...+++++++++|.+.......
T Consensus 283 l~~-n~l~~~ip~~~~~~~~~~L~~L~~~~-----------~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 350 (562)
T 3a79_B 283 IYN-LTITERIDREEFTYSETALKSLMIEH-----------VKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPP 350 (562)
T ss_dssp EEE-EEECSCCCCCCCCCCSCSCCEEEEEE-----------EEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCS
T ss_pred Eec-cEeeccccchhhhcccccchheehhh-----------cccceeecChhhhhhhhccCcceEEEccCCCcccccCcc
Confidence 999 57888888766 4444444433 222221000 0000 0123555555555554444334
Q ss_pred cCCCCceeeeeEeecCccccccchhhhhhcccccCeEEeecCCCcccchhhhhhhcCccceeceEEEecCCCcCccch-h
Q 002284 457 QLPKLDELDISIIIDGLSYIWQNETQLLQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPK-S 535 (943)
Q Consensus 457 ~l~~L~~L~Ls~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~ 535 (943)
.+++|++|+++ .+.+....+..+..+++|+.|++++|. ++.++... ..+..+++|++|++++|.+.+.+|. .
T Consensus 351 ~l~~L~~L~l~-----~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~-~~~~~l~~L~~L~l~~N~l~~~~~~~~ 423 (562)
T 3a79_B 351 SPSSFTFLNFT-----QNVFTDSVFQGCSTLKRLQTLILQRNG-LKNFFKVA-LMTKNMSSLETLDVSLNSLNSHAYDRT 423 (562)
T ss_dssp SCCCCCEEECC-----SSCCCTTTTTTCCSCSSCCEEECCSSC-CCBTTHHH-HTTTTCTTCCEEECTTSCCBSCCSSCC
T ss_pred CCCCceEEECC-----CCccccchhhhhcccCCCCEEECCCCC-cCCcccch-hhhcCCCCCCEEECCCCcCCCccChhh
Confidence 55666666666 223333334455666677777777663 44433211 1156667777777777766554444 3
Q ss_pred ccCCCCcCeeeccCCCCCcccCCCCCCCCccEEEEecCCCCCcCccccccCCCCCccEEEeecCCCcccccC--cCCCCC
Q 002284 536 LLSLSSLTEMRIHNCSSLVSFPEAVLPSQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLTYIAG--VQLPPS 613 (943)
Q Consensus 536 ~~~l~~L~~L~L~~n~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~--~~~~~~ 613 (943)
+..+++|++|++++|...+.++. .++++|++|++++|. ++.+|..+. .+++|++|++++|.+. .+|. ....++
T Consensus 424 ~~~l~~L~~L~l~~n~l~~~~~~-~l~~~L~~L~L~~N~-l~~ip~~~~--~l~~L~~L~L~~N~l~-~l~~~~~~~l~~ 498 (562)
T 3a79_B 424 CAWAESILVLNLSSNMLTGSVFR-CLPPKVKVLDLHNNR-IMSIPKDVT--HLQALQELNVASNQLK-SVPDGVFDRLTS 498 (562)
T ss_dssp CCCCTTCCEEECCSSCCCGGGGS-SCCTTCSEEECCSSC-CCCCCTTTT--SSCCCSEEECCSSCCC-CCCTTSTTTCTT
T ss_pred hcCcccCCEEECCCCCCCcchhh-hhcCcCCEEECCCCc-CcccChhhc--CCCCCCEEECCCCCCC-CCCHHHHhcCCC
Confidence 56667777777777764443332 223567777777775 445665532 6777777777777654 3443 244456
Q ss_pred CceEEeccCc
Q 002284 614 LKQLEIYNCD 623 (943)
Q Consensus 614 L~~L~l~~~~ 623 (943)
|+.|++++++
T Consensus 499 L~~L~l~~N~ 508 (562)
T 3a79_B 499 LQYIWLHDNP 508 (562)
T ss_dssp CCCEECCSCC
T ss_pred CCEEEecCCC
Confidence 7777777764
No 24
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.98 E-value=1.7e-31 Score=298.62 Aligned_cols=82 Identities=16% Similarity=0.179 Sum_probs=43.0
Q ss_pred hhhhccCcccEEEecCccccccCccccCCCCCceeecCCCccc-ccchhhhhccccceeecCCCcccccccHHHhccccC
Q 002284 83 PRLLKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIR-TLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKL 161 (943)
Q Consensus 83 ~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~-~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L 161 (943)
|+-...++|++|++++|.++.+|.+|+++++|++|++++|.+. .+|.+++++++|+++++++|.. .++
T Consensus 5 p~~~~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l 73 (454)
T 1jl5_A 5 PRNVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQA 73 (454)
T ss_dssp -----------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTC
T ss_pred ccccccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCC
Confidence 3334678899999999999889999999999999999999887 6788999999998888887741 578
Q ss_pred ceEEcCCCCCCcccc
Q 002284 162 HHLNNSNTDSLEEMP 176 (943)
Q Consensus 162 ~~L~l~~n~~~~~~p 176 (943)
++|++++|. +..+|
T Consensus 74 ~~L~l~~~~-l~~lp 87 (454)
T 1jl5_A 74 HELELNNLG-LSSLP 87 (454)
T ss_dssp SEEECTTSC-CSCCC
T ss_pred CEEEecCCc-cccCC
Confidence 889998887 55555
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=1.8e-29 Score=293.18 Aligned_cols=449 Identities=13% Similarity=0.078 Sum_probs=247.4
Q ss_pred CcceEEEEeeCCCCCCcccCCCCcCCeeEEEEeCCCCCCCCC-CCCCCCCCCeeEEecCcCceeeCccccCCCCCCCCCC
Q 002284 273 SLEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSMP-SVGQLPSLKHLEVRGMSRVKRLGSEFYGNDSPIPFPC 351 (943)
Q Consensus 273 ~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~ 351 (943)
..+.++++++....+|..+ .++|++|++++|.+.+..+ .++.+++|++|++++|......+..|.+ +++
T Consensus 32 ~~~~l~ls~~~L~~ip~~~----~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------l~~ 101 (562)
T 3a79_B 32 LESMVDYSNRNLTHVPKDL----PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLF------NQD 101 (562)
T ss_dssp -CCEEECTTSCCCSCCTTS----CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTT------CTT
T ss_pred CCcEEEcCCCCCccCCCCC----CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCC------CCC
Confidence 3477788888777888754 3789999999999887776 7888999999999988744433433333 777
Q ss_pred cceeecccccccccccccccCCccccCCcccEEeeccCCCccC-CCCCCCCCccEEEEeccCCCCccceEEeccCCceee
Q 002284 352 LETLHFAEMQEWEEWIPHGCSQEIEGFPKLRELHIVRCSKLQG-TLPTHLTLLDILVVQNFTSLPALCKLRIDRCKKVVW 430 (943)
Q Consensus 352 L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~-~~p~~l~~L~~L~~~~~~~l~~L~~L~l~~~~~~~~ 430 (943)
|++|++++|. +.. +|.. .+++|++|++++ |++++ .+|.. +..+++|++|++++|....
T Consensus 102 L~~L~Ls~N~-l~~-----lp~~--~l~~L~~L~Ls~-N~l~~l~~p~~-----------~~~l~~L~~L~L~~n~l~~- 160 (562)
T 3a79_B 102 LEYLDVSHNR-LQN-----ISCC--PMASLRHLDLSF-NDFDVLPVCKE-----------FGNLTKLTFLGLSAAKFRQ- 160 (562)
T ss_dssp CCEEECTTSC-CCE-----ECSC--CCTTCSEEECCS-SCCSBCCCCGG-----------GGGCTTCCEEEEECSBCCT-
T ss_pred CCEEECCCCc-CCc-----cCcc--ccccCCEEECCC-CCccccCchHh-----------hcccCcccEEecCCCcccc-
Confidence 8888888774 332 2332 678888888888 56662 12222 4556666666666654322
Q ss_pred eccCcccch--hhhccccccc--cCCCccccCCCCceeeeeEeecCccccccchhhhhhccc-ccCeEEeecCCCcccch
Q 002284 431 RSTTDCESQ--LYKDISNQMF--LGGPLKLQLPKLDELDISIIIDGLSYIWQNETQLLQDIA-TLKRLKIERCPKLQFLE 505 (943)
Q Consensus 431 ~~~~~~~~l--~~l~ls~n~l--~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~l~~l~ 505 (943)
..+..++.+ +++++++|.+ ++. .+..+..+. ..-.+++++|.....++
T Consensus 161 ~~~~~l~~L~L~~L~L~~n~l~~~~~---------------------------~~~~l~~l~~~~l~l~l~~n~~~~~~~ 213 (562)
T 3a79_B 161 LDLLPVAHLHLSCILLDLVSYHIKGG---------------------------ETESLQIPNTTVLHLVFHPNSLFSVQV 213 (562)
T ss_dssp TTTGGGTTSCEEEEEEEESSCCCCSS---------------------------SCCEEEECCEEEEEEEECSSSCCCCCC
T ss_pred CchhhhhhceeeEEEeeccccccccc---------------------------CcccccccCcceEEEEecCccchhhhh
Confidence 222222333 4444444443 221 111111111 01133444454333333
Q ss_pred hhhhhhcCccceeceEEEecCCC----cCccchhccCCCCcCeeeccCCCCCcc----cCCCCCCCCccEEEEecCCCCC
Q 002284 506 EEDQWQFGLSFRLEHLELINCQD----LEKLPKSLLSLSSLTEMRIHNCSSLVS----FPEAVLPSQLRVISIWDSGALK 577 (943)
Q Consensus 506 ~~~~~~~~~l~~L~~L~l~~~~~----~~~~~~~~~~l~~L~~L~L~~n~~l~~----~~~~~~~~~L~~L~l~~~~~l~ 577 (943)
... +..+++|+.|++++|.. .......+..+++|+.|++.++..... ++.....++|++|++++|...+
T Consensus 214 ~~~---~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 290 (562)
T 3a79_B 214 NMS---VNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITE 290 (562)
T ss_dssp EEE---ESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECS
T ss_pred hhc---ccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeec
Confidence 322 55667777777776631 111223455666666666666542211 1111122356666666666444
Q ss_pred cCcccccc---CCCCCccEEEeecCCCcccccCcC-----CCCCCceEEeccCcCccccccccCcccccccCCccceeee
Q 002284 578 FLPEAWML---DNNSSLEILDIRHCHLLTYIAGVQ-----LPPSLKQLEIYNCDNLRTLTAEEGIHSSRRHTSLLECLEI 649 (943)
Q Consensus 578 ~~~~~~~~---~~l~~L~~L~l~~n~~~~~~~~~~-----~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~L~~L~i 649 (943)
.+|..+.. .+++.|+.+++..+.+ .+|... ...+|+.|+++++. +..+.
T Consensus 291 ~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~-~~~~~-------------------- 347 (562)
T 3a79_B 291 RIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTP-FIHMV-------------------- 347 (562)
T ss_dssp CCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSC-CCCCC--------------------
T ss_pred cccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCC-ccccc--------------------
Confidence 55544210 2344444444444432 111100 00234455554442 11100
Q ss_pred ecCCCcccccchhhHHHHhhhhhcCCCcccccEEEeecCCCchhhHhhhcccccccEEEeeccCCcc--cccccccCCCC
Q 002284 650 HSCPSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKLESIVERLDNKISLEVIEIVSCENLK--MLPHGLHKLWH 727 (943)
Q Consensus 650 ~~c~~l~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~--~~p~~~~~l~~ 727 (943)
.... +++|++|++++|...+.+|..+.++++|+.|++++|.+.+ .+|..+.++++
T Consensus 348 ----------------------~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~ 404 (562)
T 3a79_B 348 ----------------------CPPS-PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSS 404 (562)
T ss_dssp ----------------------CCSS-CCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTT
T ss_pred ----------------------CccC-CCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCC
Confidence 0011 1456677777766655566666777777777777776655 33455667777
Q ss_pred ccEEeccCCCCCcccCcC-CccccccceeeeccccCCccCCCcCCCCCCCCceeecCCCCCccccCCCCCCCCcceEEec
Q 002284 728 LQEIDIQDCENLVSFPEG-GLLSAKLKRLVIYGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFTEDGLFPTNLHSLEID 806 (943)
Q Consensus 728 L~~L~l~~~~~l~~~p~~-~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~ 806 (943)
|++|++++|...+.+|.. +..+++|++|++++|...+.+|..+. ++|++|++++|. ++.+|.+...+++|++|+++
T Consensus 405 L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~-l~~ip~~~~~l~~L~~L~L~ 481 (562)
T 3a79_B 405 LETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNR-IMSIPKDVTHLQALQELNVA 481 (562)
T ss_dssp CCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSC-CCCCCTTTTSSCCCSEEECC
T ss_pred CCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCc-CcccChhhcCCCCCCEEECC
Confidence 777777777544446654 44466777777777766665555443 567777777763 55666666566777777777
Q ss_pred CCcchhccccccCCCCCCCccEEEecC
Q 002284 807 GMKIWKSLMQLGGFHRYTSLRRLAISG 833 (943)
Q Consensus 807 ~c~~l~~~~~~~~~~~l~~L~~L~l~~ 833 (943)
+|.... ++. ..+..+++|++|++++
T Consensus 482 ~N~l~~-l~~-~~~~~l~~L~~L~l~~ 506 (562)
T 3a79_B 482 SNQLKS-VPD-GVFDRLTSLQYIWLHD 506 (562)
T ss_dssp SSCCCC-CCT-TSTTTCTTCCCEECCS
T ss_pred CCCCCC-CCH-HHHhcCCCCCEEEecC
Confidence 766542 222 1366667777777776
No 26
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.96 E-value=2e-29 Score=281.80 Aligned_cols=283 Identities=19% Similarity=0.149 Sum_probs=159.4
Q ss_pred ccccccEEeecccCCCCCCcchhccchhhhccCcccEEEecCcccc-ccCccccCCCCC-------------ceeecCCC
Q 002284 57 DIQHLRTLLPVTLLSSRPGYLARSILPRLLKLQRLRVFSLRGYLIS-EVPDSIGDLSYL-------------RYLNLSGT 122 (943)
Q Consensus 57 ~~~~Lr~L~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~-~lp~~~~~l~~L-------------~~L~Ls~n 122 (943)
+.++||.|.+.+ |.+ +.+|+++.++++|++|++++|.+. .+|.+++++++| ++|++++|
T Consensus 9 ~~~~L~~L~l~~------n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~ 81 (454)
T 1jl5_A 9 SNTFLQEPLRHS------SNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL 81 (454)
T ss_dssp --------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS
T ss_pred ccccchhhhccc------Cch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCC
Confidence 457788886643 455 889999999999999999999976 679999999886 66666666
Q ss_pred cccccchhhhhccccceeecCCCcccccccHHHhccccCceEEcCCCCCCccccccccccccccccCceEeccCCCCCcc
Q 002284 123 QIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLLTLCNFVVGKDSGSGLR 202 (943)
Q Consensus 123 ~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l~~n~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~ 202 (943)
.++.+|.. .++|++|++++|.+.+ +|.. +++|++|++++|. +..+|..
T Consensus 82 ~l~~lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~-l~~l~~~------------------------ 129 (454)
T 1jl5_A 82 GLSSLPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNN-LKALSDL------------------------ 129 (454)
T ss_dssp CCSCCCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSC-CSCCCSC------------------------
T ss_pred ccccCCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCc-cCcccCC------------------------
Confidence 66666542 2566666666664333 4432 3566666666665 3333211
Q ss_pred cccCcccccCceeecccccccCccchhhcccCCCCCCCeEEEEeecCCCCCCchhhhhHHhhhccCCCCCCcceEEEEee
Q 002284 203 ELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGKKNLKVLMLEWTRSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGF 282 (943)
Q Consensus 203 ~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~ 282 (943)
.++|++|++++|.+++ ++.+..+++|+.|+++++
T Consensus 130 ---------------------------------~~~L~~L~L~~n~l~~-------------lp~~~~l~~L~~L~l~~N 163 (454)
T 1jl5_A 130 ---------------------------------PPLLEYLGVSNNQLEK-------------LPELQNSSFLKIIDVDNN 163 (454)
T ss_dssp ---------------------------------CTTCCEEECCSSCCSS-------------CCCCTTCTTCCEEECCSS
T ss_pred ---------------------------------CCCCCEEECcCCCCCC-------------CcccCCCCCCCEEECCCC
Confidence 0345555555555531 123555666777777766
Q ss_pred CCCCCCcccCCCCcCCeeEEEEeCCCCCCCCCCCCCCCCCCeeEEecCcCceeeCccccCCCCCCCCCCcceeecccccc
Q 002284 283 GGKKFPTWLGYSLFSNLVTLKFQDCSMCTSMPSVGQLPSLKHLEVRGMSRVKRLGSEFYGNDSPIPFPCLETLHFAEMQE 362 (943)
Q Consensus 283 ~~~~~p~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 362 (943)
....+|.+ ..+|++|++++|.+.+ +|.++.+++|++|++++|...+ ++. ..++|++|++++|.
T Consensus 164 ~l~~lp~~-----~~~L~~L~L~~n~l~~-l~~~~~l~~L~~L~l~~N~l~~-l~~---------~~~~L~~L~l~~n~- 226 (454)
T 1jl5_A 164 SLKKLPDL-----PPSLEFIAAGNNQLEE-LPELQNLPFLTAIYADNNSLKK-LPD---------LPLSLESIVAGNNI- 226 (454)
T ss_dssp CCSCCCCC-----CTTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSCCSS-CCC---------CCTTCCEEECCSSC-
T ss_pred cCcccCCC-----cccccEEECcCCcCCc-CccccCCCCCCEEECCCCcCCc-CCC---------CcCcccEEECcCCc-
Confidence 66666654 3478888888888866 5678888888888888886322 211 14578888888774
Q ss_pred cccccccccCCccccCCcccEEeeccCCCccCCCCCCCCCccEEEEeccCCCCccceEEeccCCceeeeccCcccchhhh
Q 002284 363 WEEWIPHGCSQEIEGFPKLRELHIVRCSKLQGTLPTHLTLLDILVVQNFTSLPALCKLRIDRCKKVVWRSTTDCESQLYK 442 (943)
Q Consensus 363 l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l 442 (943)
+.. +| .++.+++|++|++++ |+++ .+|.. +++|+.|++++|....... ..++++++
T Consensus 227 l~~-----lp-~~~~l~~L~~L~l~~-N~l~-~l~~~--------------~~~L~~L~l~~N~l~~l~~--~~~~L~~L 282 (454)
T 1jl5_A 227 LEE-----LP-ELQNLPFLTTIYADN-NLLK-TLPDL--------------PPSLEALNVRDNYLTDLPE--LPQSLTFL 282 (454)
T ss_dssp CSS-----CC-CCTTCTTCCEEECCS-SCCS-SCCSC--------------CTTCCEEECCSSCCSCCCC--CCTTCCEE
T ss_pred CCc-----cc-ccCCCCCCCEEECCC-CcCC-ccccc--------------ccccCEEECCCCcccccCc--ccCcCCEE
Confidence 222 23 367788888888888 6776 45542 2566666666665433221 12455666
Q ss_pred ccccccccCCCccccCCCCceeeee
Q 002284 443 DISNQMFLGGPLKLQLPKLDELDIS 467 (943)
Q Consensus 443 ~ls~n~l~~~~~~~~l~~L~~L~Ls 467 (943)
++++|.+++.+.. .++|+.|+++
T Consensus 283 ~ls~N~l~~l~~~--~~~L~~L~l~ 305 (454)
T 1jl5_A 283 DVSENIFSGLSEL--PPNLYYLNAS 305 (454)
T ss_dssp ECCSSCCSEESCC--CTTCCEEECC
T ss_pred ECcCCccCcccCc--CCcCCEEECc
Confidence 6666665553211 2445555555
No 27
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=2.9e-28 Score=272.71 Aligned_cols=85 Identities=21% Similarity=0.162 Sum_probs=68.6
Q ss_pred ccchhhhccCcccEEEecCccccccCccccCCCCCceeecCCCcccccchhhhhccccceeecCCCcccccccHHHhccc
Q 002284 80 SILPRLLKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLI 159 (943)
Q Consensus 80 ~~~~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~ 159 (943)
..+..+.++++|++|++++|.++.+| +++.+++|++|++++|.++.+| ++.+++|++|++++|.+. .+| +++++
T Consensus 33 ~~~~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~-~~~--~~~l~ 106 (457)
T 3bz5_A 33 TDTISEEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLT-NLD--VTPLT 106 (457)
T ss_dssp TSEEEHHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCS-CCC--CTTCT
T ss_pred ccccChhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCc-eee--cCCCC
Confidence 34455668889999999998888887 6888889999999999888886 788888888888888643 344 78888
Q ss_pred cCceEEcCCCC
Q 002284 160 KLHHLNNSNTD 170 (943)
Q Consensus 160 ~L~~L~l~~n~ 170 (943)
+|++|++++|.
T Consensus 107 ~L~~L~L~~N~ 117 (457)
T 3bz5_A 107 KLTYLNCDTNK 117 (457)
T ss_dssp TCCEEECCSSC
T ss_pred cCCEEECCCCc
Confidence 88888888887
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.96 E-value=8.5e-28 Score=271.90 Aligned_cols=96 Identities=20% Similarity=0.289 Sum_probs=65.4
Q ss_pred ccCcccEEEecCccccccCccccCCCCCceeecCCCcccccchhhhhccccceeecCCCcccccccHHHhccccCceEEc
Q 002284 87 KLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNN 166 (943)
Q Consensus 87 ~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l 166 (943)
.+++++.|+++++.+..+|. +..+++|++|++++|.++.+|. ++++++|++|++++|.+.+ +|. ++++++|++|++
T Consensus 44 ~l~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~L 119 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIAD-ITP-LANLTNLTGLTL 119 (466)
T ss_dssp HHHTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEEC
T ss_pred HhccccEEecCCCCCccCcc-hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCcccc-Chh-hcCCCCCCEEEC
Confidence 45677777777777777763 6777777777777777777765 7777777777777775433 333 777777777777
Q ss_pred CCCCCCcccccccccccccccc
Q 002284 167 SNTDSLEEMPLGIGKLTCLLTL 188 (943)
Q Consensus 167 ~~n~~~~~~p~~~~~L~~L~~L 188 (943)
++|. +..+|. ++++++|++|
T Consensus 120 ~~n~-l~~~~~-~~~l~~L~~L 139 (466)
T 1o6v_A 120 FNNQ-ITDIDP-LKNLTNLNRL 139 (466)
T ss_dssp CSSC-CCCCGG-GTTCTTCSEE
T ss_pred CCCC-CCCChH-HcCCCCCCEE
Confidence 7776 444443 5555555555
No 29
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=3.6e-28 Score=275.21 Aligned_cols=133 Identities=13% Similarity=-0.020 Sum_probs=94.4
Q ss_pred ccccEEEeecCCCchhhHhhhcccccccEEEeeccCCcccccccccCCCCccEEeccCCCCCcccCcCCccccccceeee
Q 002284 678 QALKFLSIWHCSKLESIVERLDNKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVI 757 (943)
Q Consensus 678 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l 757 (943)
++|+.|++++|...+..+..+..+++|++|++++|.+.+..|..+.++++|++|++++|...+..|..+..+++|++|++
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence 46778888887776666777777788888888888777777777777888888888887544444555666778888888
Q ss_pred ccccCCccCCCcCCCCCCCCceeecCCCCCccccCCC-CCCCCcceEEecCCcch
Q 002284 758 YGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFTEDG-LFPTNLHSLEIDGMKIW 811 (943)
Q Consensus 758 ~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~l~~c~~l 811 (943)
++|...+..|..+..+++|++|++++|. ++.++.+. ..+++|++|++++|+..
T Consensus 355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~ 408 (455)
T 3v47_A 355 SYNHIRALGDQSFLGLPNLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 408 (455)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCcccccChhhccccccccEEECCCCc-cccCCHhHhccCCcccEEEccCCCcc
Confidence 8877666667777777888888887765 44455433 34566777777766644
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.95 E-value=2.9e-26 Score=259.36 Aligned_cols=233 Identities=16% Similarity=0.218 Sum_probs=114.1
Q ss_pred cCCeeEEEEeCCCCCCCCCCCCCCCCCCeeEEecCcCceeeCccccCCCCCCCCCCcceeecccccccccccccccCCcc
Q 002284 296 FSNLVTLKFQDCSMCTSMPSVGQLPSLKHLEVRGMSRVKRLGSEFYGNDSPIPFPCLETLHFAEMQEWEEWIPHGCSQEI 375 (943)
Q Consensus 296 l~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 375 (943)
+++++.|++.++.+.. +|.+..+++|++|++++|... .++. +.. +++|++|+++++. +.. .+. +
T Consensus 45 l~~l~~L~l~~~~i~~-l~~~~~l~~L~~L~Ls~n~l~-~~~~-~~~------l~~L~~L~l~~n~-l~~-----~~~-~ 108 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKS-IDGVEYLNNLTQINFSNNQLT-DITP-LKN------LTKLVDILMNNNQ-IAD-----ITP-L 108 (466)
T ss_dssp HHTCCEEECCSSCCCC-CTTGGGCTTCCEEECCSSCCC-CCGG-GTT------CTTCCEEECCSSC-CCC-----CGG-G
T ss_pred hccccEEecCCCCCcc-CcchhhhcCCCEEECCCCccC-Cchh-hhc------cccCCEEECCCCc-ccc-----Chh-h
Confidence 4566777776666543 445556666667766666522 2211 111 4444444444442 111 011 4
Q ss_pred ccCCcccEEeeccCCCccCCCCCCCCCccEEEEeccCCCCccceEEeccCCceeeeccCcccchhhhccccccccCCCcc
Q 002284 376 EGFPKLRELHIVRCSKLQGTLPTHLTLLDILVVQNFTSLPALCKLRIDRCKKVVWRSTTDCESQLYKDISNQMFLGGPLK 455 (943)
Q Consensus 376 ~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~l~ls~n~l~~~~~~ 455 (943)
..+++|++|++++ ++++ .+|. +..+++|++|++ ++|.+.+.+..
T Consensus 109 ~~l~~L~~L~L~~-n~l~-~~~~------------~~~l~~L~~L~l----------------------~~n~l~~~~~~ 152 (466)
T 1o6v_A 109 ANLTNLTGLTLFN-NQIT-DIDP------------LKNLTNLNRLEL----------------------SSNTISDISAL 152 (466)
T ss_dssp TTCTTCCEEECCS-SCCC-CCGG------------GTTCTTCSEEEE----------------------EEEEECCCGGG
T ss_pred cCCCCCCEEECCC-CCCC-CChH------------HcCCCCCCEEEC----------------------CCCccCCChhh
Confidence 5566666666666 3554 2332 334444444444 44444444444
Q ss_pred ccCCCCceeeeeEeecCccccccchhhhhhcccccCeEEeecCCCcccchhhhhhhcCccceeceEEEecCCCcCccchh
Q 002284 456 LQLPKLDELDISIIIDGLSYIWQNETQLLQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPKS 535 (943)
Q Consensus 456 ~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 535 (943)
..+++|+.|+++ +. +.... .+..+++|+.|++++|. ++.++. +..+++|++|++++|.+.+..|
T Consensus 153 ~~l~~L~~L~l~---~~---~~~~~--~~~~l~~L~~L~l~~n~-l~~~~~-----l~~l~~L~~L~l~~n~l~~~~~-- 216 (466)
T 1o6v_A 153 SGLTSLQQLSFG---NQ---VTDLK--PLANLTTLERLDISSNK-VSDISV-----LAKLTNLESLIATNNQISDITP-- 216 (466)
T ss_dssp TTCTTCSEEEEE---ES---CCCCG--GGTTCTTCCEEECCSSC-CCCCGG-----GGGCTTCSEEECCSSCCCCCGG--
T ss_pred ccCCcccEeecC---Cc---ccCch--hhccCCCCCEEECcCCc-CCCChh-----hccCCCCCEEEecCCccccccc--
Confidence 455666666664 11 11111 14555666666666654 333321 4555666666666665444333
Q ss_pred ccCCCCcCeeeccCCCCCcccCCCCCCCCccEEEEecCCCCCcCccccccCCCCCccEEEeecCCC
Q 002284 536 LLSLSSLTEMRIHNCSSLVSFPEAVLPSQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHL 601 (943)
Q Consensus 536 ~~~l~~L~~L~L~~n~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~ 601 (943)
+..+++|++|++++|. ++.++....+++|++|++++|.... ++. +..+++|++|++++|.+
T Consensus 217 ~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~-~~~---~~~l~~L~~L~l~~n~l 277 (466)
T 1o6v_A 217 LGILTNLDELSLNGNQ-LKDIGTLASLTNLTDLDLANNQISN-LAP---LSGLTKLTELKLGANQI 277 (466)
T ss_dssp GGGCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCC-CGG---GTTCTTCSEEECCSSCC
T ss_pred ccccCCCCEEECCCCC-cccchhhhcCCCCCEEECCCCcccc-chh---hhcCCCCCEEECCCCcc
Confidence 4456666666666664 3333333334555555555555322 221 23455555555555543
No 31
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.95 E-value=7.6e-27 Score=264.34 Aligned_cols=367 Identities=14% Similarity=0.072 Sum_probs=207.2
Q ss_pred hccccccccCCCccccCCCCceeeeeEeecCccccccchhhhhhcccccCeEEeecCCCcccchhhhhhhcCccceeceE
Q 002284 442 KDISNQMFLGGPLKLQLPKLDELDISIIIDGLSYIWQNETQLLQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHL 521 (943)
Q Consensus 442 l~ls~n~l~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L 521 (943)
++.+++.++..|. ..++|++|+++ .+.+..+.+..+..+++|+.|++++|.....++... |..+++|++|
T Consensus 15 ~~c~~~~l~~lp~--l~~~l~~L~Ls-----~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~---~~~l~~L~~L 84 (455)
T 3v47_A 15 AICINRGLHQVPE--LPAHVNYVDLS-----LNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNT---FRGLSSLIIL 84 (455)
T ss_dssp EECCSSCCSSCCC--CCTTCCEEECC-----SSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTT---TTTCTTCCEE
T ss_pred cCcCCCCcccCCC--CCCccCEEEec-----CCccCcCChhHhccCccccEEECcCCcccceECccc---ccccccCCEE
Confidence 4455556666555 34778888887 345555666777888888888888886544555444 7888899999
Q ss_pred EEecCCCcCccchhccCCCCcCeeeccCCCCCcccCC---CCCCCCccEEEEecCCCCCcCccccccCCCCCccEEEeec
Q 002284 522 ELINCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPE---AVLPSQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRH 598 (943)
Q Consensus 522 ~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~l~~~~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~ 598 (943)
++++|.+.+..|..+..+++|++|++++|...+.++. ...+++|++|++++|...+..|..+ +.++++|++|++++
T Consensus 85 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~~l~~L~~L~L~~ 163 (455)
T 3v47_A 85 KLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF-FLNMRRFHVLDLTF 163 (455)
T ss_dssp ECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGG-GGGCTTCCEEECTT
T ss_pred eCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccc-cCCCCcccEEeCCC
Confidence 9999887777788888889999999998875543332 2336888899998888655555543 35788899999998
Q ss_pred CCCcccccCc-C--CCCCCceEEeccCcCccccccccC---cccccccCCccceeeeecCCCcccccchhhHHHHhhhhh
Q 002284 599 CHLLTYIAGV-Q--LPPSLKQLEIYNCDNLRTLTAEEG---IHSSRRHTSLLECLEIHSCPSLTCLISKNELRAALDYLV 672 (943)
Q Consensus 599 n~~~~~~~~~-~--~~~~L~~L~l~~~~~L~~l~~~~~---~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~ 672 (943)
|.+.+..+.. . ...+|+.|+++++. +..++...- .......++
T Consensus 164 n~l~~~~~~~l~~l~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~~~~~------------------------------ 212 (455)
T 3v47_A 164 NKVKSICEEDLLNFQGKHFTLLRLSSIT-LQDMNEYWLGWEKCGNPFKNT------------------------------ 212 (455)
T ss_dssp CCBSCCCTTTSGGGTTCEEEEEECTTCB-CTTCSTTCTTHHHHCCTTTTC------------------------------
T ss_pred CcccccChhhhhccccccccccccccCc-ccccchhhccccccccccccc------------------------------
Confidence 8765544332 1 11457777777763 333221100 000011223
Q ss_pred cCCCcccccEEEeecCCCchhhHhhhccc---ccccEEEeeccCCccccc----------cccc--CCCCccEEeccCCC
Q 002284 673 VGNLPQALKFLSIWHCSKLESIVERLDNK---ISLEVIEIVSCENLKMLP----------HGLH--KLWHLQEIDIQDCE 737 (943)
Q Consensus 673 ~~~lp~~L~~L~l~~~~~l~~~~~~~~~l---~~L~~L~l~~~~~~~~~p----------~~~~--~l~~L~~L~l~~~~ 737 (943)
+|++|++++|...+..+..+... ++|+.|++++|...+... ..+. ..++|++|++++|.
T Consensus 213 ------~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~ 286 (455)
T 3v47_A 213 ------SITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK 286 (455)
T ss_dssp ------EEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSC
T ss_pred ------eeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcc
Confidence 45555555555444444443332 455555555553332110 0111 12455555555554
Q ss_pred CCcccCcCCccccccceeeeccccCCccCCCcCCCCCCCCceeecCCCCCccccCCCCCCCCcceEEecCCcchhccccc
Q 002284 738 NLVSFPEGGLLSAKLKRLVIYGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFTEDGLFPTNLHSLEIDGMKIWKSLMQL 817 (943)
Q Consensus 738 ~l~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~ 817 (943)
..+..|..+..+++|++|++++|...+..|..+..+++|++|++++|......+..+..+++|++|++++|......+.
T Consensus 287 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~- 365 (455)
T 3v47_A 287 IFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQ- 365 (455)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTT-
T ss_pred ccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChh-
Confidence 4444444455555555555555554444455555555555555555543222233333345555555555544332221
Q ss_pred cCCCCCCCccEEEecCCCCcCcccCcccccccCCCCCCccEEEeecC
Q 002284 818 GGFHRYTSLRRLAISGCDEDMVSFPLEDIRLGTTLPACLTQLEIFNF 864 (943)
Q Consensus 818 ~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 864 (943)
.+..+++|++|++++ +.+..++.+.. ..+++|++|+++++
T Consensus 366 -~~~~l~~L~~L~L~~--N~l~~~~~~~~----~~l~~L~~L~l~~N 405 (455)
T 3v47_A 366 -SFLGLPNLKELALDT--NQLKSVPDGIF----DRLTSLQKIWLHTN 405 (455)
T ss_dssp -TTTTCTTCCEEECCS--SCCSCCCTTTT----TTCTTCCEEECCSS
T ss_pred -hccccccccEEECCC--CccccCCHhHh----ccCCcccEEEccCC
Confidence 345555555555555 23334443221 23455555555554
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.95 E-value=7.9e-27 Score=261.04 Aligned_cols=117 Identities=20% Similarity=0.165 Sum_probs=97.0
Q ss_pred cccccccccEEeecccCCCCCCcchhccchhhhccCcccEEEecCccccccCccccCCCCCceeecCCCcccccchhhhh
Q 002284 54 DLYDIQHLRTLLPVTLLSSRPGYLARSILPRLLKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNK 133 (943)
Q Consensus 54 ~~~~~~~Lr~L~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~ 133 (943)
.+.++++|++|.+.++ .+.+ +| ++..+++|++|++++|.++.+| ++.+++|++|++++|.++.+| +++
T Consensus 37 ~~~~l~~L~~L~Ls~n------~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~ 104 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNS------SITD-MT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTP 104 (457)
T ss_dssp EHHHHTTCCEEECCSS------CCCC-CT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTT
T ss_pred ChhHcCCCCEEEccCC------Cccc-Ch-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCC
Confidence 4567889999977543 4443 44 6679999999999999999986 899999999999999999986 899
Q ss_pred ccccceeecCCCcccccccHHHhccccCceEEcCCCCCCcccccccccccccccc
Q 002284 134 LYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLLTL 188 (943)
Q Consensus 134 L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l~~n~~~~~~p~~~~~L~~L~~L 188 (943)
+++|++|++++|.+. .+| ++.+++|++|++++|. +..++ ++.+++|++|
T Consensus 105 l~~L~~L~L~~N~l~-~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L 153 (457)
T 3bz5_A 105 LTKLTYLNCDTNKLT-KLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTEL 153 (457)
T ss_dssp CTTCCEEECCSSCCS-CCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEE
T ss_pred CCcCCEEECCCCcCC-eec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEE
Confidence 999999999999744 455 8999999999999998 55553 6666666666
No 33
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=2.8e-25 Score=241.43 Aligned_cols=86 Identities=22% Similarity=0.417 Sum_probs=70.2
Q ss_pred hccCcccEEEecCccccccCccccCCCCCceeecCCCcccccchhhhhccccceeecCCCcccccccHHHhccccCceEE
Q 002284 86 LKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLN 165 (943)
Q Consensus 86 ~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~ 165 (943)
..+++|++|+++++.+..+|. +..+++|++|++++|.++.+|. +..+++|++|++++|. +..+| .+.++++|++|+
T Consensus 41 ~~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~-i~~~~-~~~~l~~L~~L~ 116 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNK-ITDIS-ALQNLTNLRELY 116 (347)
T ss_dssp HHHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCG-GGTTCTTCSEEE
T ss_pred hhcccccEEEEeCCccccchh-hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCc-ccCch-HHcCCCcCCEEE
Confidence 478889999999998888864 8888999999999999988876 8889999999999885 44454 588889999999
Q ss_pred cCCCCCCcccc
Q 002284 166 NSNTDSLEEMP 176 (943)
Q Consensus 166 l~~n~~~~~~p 176 (943)
+++|. +..+|
T Consensus 117 l~~n~-i~~~~ 126 (347)
T 4fmz_A 117 LNEDN-ISDIS 126 (347)
T ss_dssp CTTSC-CCCCG
T ss_pred CcCCc-ccCch
Confidence 98887 44443
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=3.5e-26 Score=252.66 Aligned_cols=284 Identities=18% Similarity=0.130 Sum_probs=192.8
Q ss_pred cccccccEEeecccCCCCCCcchhccchhhh-ccCcccEEEecCccccccC-ccccCCCCCceeecCCCcccccc-hhhh
Q 002284 56 YDIQHLRTLLPVTLLSSRPGYLARSILPRLL-KLQRLRVFSLRGYLISEVP-DSIGDLSYLRYLNLSGTQIRTLP-ESVN 132 (943)
Q Consensus 56 ~~~~~Lr~L~~~~~~~l~~~~~~~~~~~~~~-~l~~L~~L~L~~n~i~~lp-~~~~~l~~L~~L~Ls~n~i~~lp-~~i~ 132 (943)
..++++|.|.+.++. ...+|+.++ .+++|++|++++|.++.+| ..|+.+++|++|+|++|.++.+| ..|+
T Consensus 42 ~~l~~l~~l~l~~~~-------l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 114 (390)
T 3o6n_A 42 ITLNNQKIVTFKNST-------MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ 114 (390)
T ss_dssp GGGCCCSEEEEESCE-------ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred cccCCceEEEecCCc-------hhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhc
Confidence 357889999876542 567888877 8999999999999999885 58999999999999999999885 5689
Q ss_pred hccccceeecCCCcccccccHH-HhccccCceEEcCCCCCCccccccccccccccccCceEeccCCCCCcccccCccccc
Q 002284 133 KLYNLHTLLLEGCRELKKKCAD-MGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLC 211 (943)
Q Consensus 133 ~L~~L~~L~L~~n~~~~~~p~~-~~~L~~L~~L~l~~n~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~l~~L~ 211 (943)
++++|++|++++|. +..+|.. |+++++|++|++++|.+.+..|..++.+++|++|+...+.
T Consensus 115 ~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~----------------- 176 (390)
T 3o6n_A 115 NVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR----------------- 176 (390)
T ss_dssp TCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSC-----------------
T ss_pred CCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCc-----------------
Confidence 99999999999996 5566665 6899999999999999444334558888988888432221
Q ss_pred CceeecccccccCccchhhcccCCCCCCCeEEEEeecCCCCCCchhhhhHHhhhccCCCCCCcceEEEEeeCCCCCCccc
Q 002284 212 GTLNISKLENVKYVGDAMEAQLDGKKNLKVLMLEWTRSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWL 291 (943)
Q Consensus 212 ~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~ 291 (943)
+... .+..+++|+.|++++|.++ .+...++|+.|+++++....+|...
T Consensus 177 -------l~~~---------~~~~l~~L~~L~l~~n~l~----------------~~~~~~~L~~L~l~~n~l~~~~~~~ 224 (390)
T 3o6n_A 177 -------LTHV---------DLSLIPSLFHANVSYNLLS----------------TLAIPIAVEELDASHNSINVVRGPV 224 (390)
T ss_dssp -------CSBC---------CGGGCTTCSEEECCSSCCS----------------EEECCSSCSEEECCSSCCCEEECCC
T ss_pred -------CCcc---------ccccccccceeeccccccc----------------ccCCCCcceEEECCCCeeeeccccc
Confidence 1000 1334566777777766553 1223446777777777666555432
Q ss_pred CCCCcCCeeEEEEeCCCCCCCCCCCCCCCCCCeeEEecCcCceeeCccccCCCCCCCCCCcceeeccccccccccccccc
Q 002284 292 GYSLFSNLVTLKFQDCSMCTSMPSVGQLPSLKHLEVRGMSRVKRLGSEFYGNDSPIPFPCLETLHFAEMQEWEEWIPHGC 371 (943)
Q Consensus 292 ~~~~l~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 371 (943)
+++|++|++++|.+.+. +.++.+++|++|++++|......+..+.. +++|++|++++|. +.. +
T Consensus 225 ----~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~------l~~L~~L~L~~n~-l~~-----~ 287 (390)
T 3o6n_A 225 ----NVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVK------MQRLERLYISNNR-LVA-----L 287 (390)
T ss_dssp ----CSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTT------CSSCCEEECCSSC-CCE-----E
T ss_pred ----cccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccc------cccCCEEECCCCc-Ccc-----c
Confidence 46777777777777543 56667777777777777644444433333 6667777776663 222 1
Q ss_pred CCccccCCcccEEeeccCCCccCCCCCCCCCccEEEEeccCCCCccceEEeccCC
Q 002284 372 SQEIEGFPKLRELHIVRCSKLQGTLPTHLTLLDILVVQNFTSLPALCKLRIDRCK 426 (943)
Q Consensus 372 ~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~~~~~~~l~~L~~L~l~~~~ 426 (943)
+.....+++|++|++++ |+++ .+|.. +..+++|++|++++|.
T Consensus 288 ~~~~~~l~~L~~L~L~~-n~l~-~~~~~-----------~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 288 NLYGQPIPTLKVLDLSH-NHLL-HVERN-----------QPQFDRLENLYLDHNS 329 (390)
T ss_dssp ECSSSCCTTCCEEECCS-SCCC-CCGGG-----------HHHHTTCSEEECCSSC
T ss_pred CcccCCCCCCCEEECCC-Ccce-ecCcc-----------ccccCcCCEEECCCCc
Confidence 23335566777777777 4555 44432 2234555555555554
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=2.7e-25 Score=252.89 Aligned_cols=89 Identities=25% Similarity=0.316 Sum_probs=59.2
Q ss_pred hccchhhhccCcccEEEecCcccccc-CccccCCCCCceeecCCCccccc-chhhhhccccceeecCCCcccccccH-HH
Q 002284 79 RSILPRLLKLQRLRVFSLRGYLISEV-PDSIGDLSYLRYLNLSGTQIRTL-PESVNKLYNLHTLLLEGCRELKKKCA-DM 155 (943)
Q Consensus 79 ~~~~~~~~~l~~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~n~~~~~~p~-~~ 155 (943)
..+|.++. +++++|+|++|.++.+ |..|.++++|++|+|++|.|+.+ |.+|+++++|++|+|++|. +..+|. .|
T Consensus 24 ~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~ 100 (477)
T 2id5_A 24 VAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVF 100 (477)
T ss_dssp SSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSS
T ss_pred CcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCcccc
Confidence 34555443 4667777777777766 45677777777777777777766 5667777777777777765 334443 36
Q ss_pred hccccCceEEcCCCC
Q 002284 156 GNLIKLHHLNNSNTD 170 (943)
Q Consensus 156 ~~L~~L~~L~l~~n~ 170 (943)
+++++|++|++++|.
T Consensus 101 ~~l~~L~~L~Ls~n~ 115 (477)
T 2id5_A 101 TGLSNLTKLDISENK 115 (477)
T ss_dssp TTCTTCCEEECTTSC
T ss_pred cCCCCCCEEECCCCc
Confidence 677777777777776
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=1.7e-24 Score=239.09 Aligned_cols=309 Identities=17% Similarity=0.176 Sum_probs=199.6
Q ss_pred cCCCCceeeeeEeecCccccccchhhhhhcccccCeEEeecCCCcccchhhhhhhcCccceeceEEEecCCCcCccchhc
Q 002284 457 QLPKLDELDISIIIDGLSYIWQNETQLLQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPKSL 536 (943)
Q Consensus 457 ~l~~L~~L~Ls~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 536 (943)
.+++++.|+++ .+.+..++...+..+++|+.|++++|. ++.++... |..+++|++|++++|.+.+..|..+
T Consensus 43 ~l~~l~~l~l~-----~~~l~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~~---~~~l~~L~~L~L~~n~l~~~~~~~~ 113 (390)
T 3o6n_A 43 TLNNQKIVTFK-----NSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYA---FAYAHTIQKLYMGFNAIRYLPPHVF 113 (390)
T ss_dssp GGCCCSEEEEE-----SCEESEECTHHHHHCCCCSEEECTTSC-CCEECTTT---TTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred ccCCceEEEec-----CCchhhCChhHhcccccCcEEECCCCc-ccccChhh---ccCCCCcCEEECCCCCCCcCCHHHh
Confidence 45677777777 445666777777888888888888885 56555543 7888888888888887766667778
Q ss_pred cCCCCcCeeeccCCCCCcccCCCC--CCCCccEEEEecCCCCCcCccccccCCCCCccEEEeecCCCcccccCcCCCCCC
Q 002284 537 LSLSSLTEMRIHNCSSLVSFPEAV--LPSQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLTYIAGVQLPPSL 614 (943)
Q Consensus 537 ~~l~~L~~L~L~~n~~l~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L 614 (943)
..+++|++|++++|. ++.+|... .+++|++|++++|......+.. +..+++|++|++++|.+... + ...+++|
T Consensus 114 ~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~l~~L 188 (390)
T 3o6n_A 114 QNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT--FQATTSLQNLQLSSNRLTHV-D-LSLIPSL 188 (390)
T ss_dssp TTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTT--TSSCTTCCEEECCSSCCSBC-C-GGGCTTC
T ss_pred cCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhh--ccCCCCCCEEECCCCcCCcc-c-ccccccc
Confidence 888888888888886 45666543 3788888888888754444443 35788888888888875432 2 2345667
Q ss_pred ceEEeccCcCccccccccCcccccccCCccceeeeecCCCcccccchhhHHHHhhhhhcCCCcccccEEEeecCCCchhh
Q 002284 615 KQLEIYNCDNLRTLTAEEGIHSSRRHTSLLECLEIHSCPSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKLESI 694 (943)
Q Consensus 615 ~~L~l~~~~~L~~l~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~~~~l~~~ 694 (943)
+.|+++++ .+..++ ..++|+.++++++. ++.+ + ...+++|+.|++++|.....
T Consensus 189 ~~L~l~~n-~l~~~~----------~~~~L~~L~l~~n~-l~~~-------------~-~~~~~~L~~L~l~~n~l~~~- 241 (390)
T 3o6n_A 189 FHANVSYN-LLSTLA----------IPIAVEELDASHNS-INVV-------------R-GPVNVELTILKLQHNNLTDT- 241 (390)
T ss_dssp SEEECCSS-CCSEEE----------CCSSCSEEECCSSC-CCEE-------------E-CCCCSSCCEEECCSSCCCCC-
T ss_pred ceeecccc-cccccC----------CCCcceEEECCCCe-eeec-------------c-ccccccccEEECCCCCCccc-
Confidence 78877776 333222 23456666665542 2211 1 12234677777777654432
Q ss_pred HhhhcccccccEEEeeccCCcccccccccCCCCccEEeccCCCCCcccCcCCccccccceeeeccccCCccCCCcCCCCC
Q 002284 695 VERLDNKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVIYGCKKLEALPEGMHNLS 774 (943)
Q Consensus 695 ~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~ 774 (943)
..+..+++|++|++++|.+.+..|..+..+++|++|++++| .++.+|.....+++|++|++++|. +..+|..+..++
T Consensus 242 -~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~ 318 (390)
T 3o6n_A 242 -AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFD 318 (390)
T ss_dssp -GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHT
T ss_pred -HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCCc-ceecCccccccC
Confidence 35666677777777777766666666777777777777776 345556555566677777777765 445565666666
Q ss_pred CCCceeecCCCCCccccCCCCCCCCcceEEecCCcchh
Q 002284 775 SLQYLTIGGVPSLLCFTEDGLFPTNLHSLEIDGMKIWK 812 (943)
Q Consensus 775 ~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~ 812 (943)
+|++|++++|+ +..++ ...+++|++|++++|+...
T Consensus 319 ~L~~L~L~~N~-i~~~~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 319 RLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp TCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSCEEH
T ss_pred cCCEEECCCCc-cceeC--chhhccCCEEEcCCCCccc
Confidence 77777777665 33343 2234666666666665443
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.93 E-value=1.3e-24 Score=236.12 Aligned_cols=84 Identities=13% Similarity=0.063 Sum_probs=44.0
Q ss_pred hcccccccEEEeeccCCcccccccccCCCCccEEeccCCCCCcccCcCCccccccceeeeccccCCccCCCcCCCCCCCC
Q 002284 698 LDNKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVIYGCKKLEALPEGMHNLSSLQ 777 (943)
Q Consensus 698 ~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~ 777 (943)
+..+++|+.|++++|.+.+. + .+..+++|++|++++|......|..+..+++|++|++++|+..+..| +..+++|+
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 336 (347)
T 4fmz_A 261 VKDLTKLKMLNVGSNQISDI-S-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMD 336 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC-G-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCS
T ss_pred HhcCCCcCEEEccCCccCCC-h-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccc
Confidence 44455555555555544332 2 34555666666666664444444444555566666666655433333 55566666
Q ss_pred ceeecCCC
Q 002284 778 YLTIGGVP 785 (943)
Q Consensus 778 ~L~l~~~~ 785 (943)
+|++++|+
T Consensus 337 ~L~l~~N~ 344 (347)
T 4fmz_A 337 SADFANQV 344 (347)
T ss_dssp EESSSCC-
T ss_pred eeehhhhc
Confidence 66666655
No 38
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.92 E-value=3.6e-24 Score=243.56 Aligned_cols=277 Identities=19% Similarity=0.179 Sum_probs=168.6
Q ss_pred cCCCCceeeeeEeecCccccccchhhhhhcccccCeEEeecCCCcccchhhhhhhcCccceeceEEEecCCCcCccchhc
Q 002284 457 QLPKLDELDISIIIDGLSYIWQNETQLLQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPKSL 536 (943)
Q Consensus 457 ~l~~L~~L~Ls~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 536 (943)
.+++|++|+++ .+.+..+.+..+..+++|+.|++++|. ++.++... |..+++|++|++++|.+.+..+..+
T Consensus 54 ~l~~L~~L~L~-----~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~---~~~l~~L~~L~Ls~n~i~~~~~~~~ 124 (477)
T 2id5_A 54 SFPHLEELELN-----ENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGV---FTGLSNLTKLDISENKIVILLDYMF 124 (477)
T ss_dssp TCTTCCEEECT-----TSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTS---STTCTTCCEEECTTSCCCEECTTTT
T ss_pred CCCCCCEEECC-----CCccCEeChhhhhCCccCCEEECCCCc-CCccCccc---ccCCCCCCEEECCCCccccCChhHc
Confidence 34444444444 223333444556666777777777664 55555443 6667777777777776666666667
Q ss_pred cCCCCcCeeeccCCCCCcccCCC--CCCCCccEEEEecCCCCCcCccccccCCCCCccEEEeecCCCcccccC-cCCCCC
Q 002284 537 LSLSSLTEMRIHNCSSLVSFPEA--VLPSQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLTYIAG-VQLPPS 613 (943)
Q Consensus 537 ~~l~~L~~L~L~~n~~l~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~~~ 613 (943)
..+++|++|++++|... .++.. ..+++|++|++++|.. ..++... +.++++|+.|++++|.+....+. ....++
T Consensus 125 ~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~-l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~ 201 (477)
T 2id5_A 125 QDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNL-TSIPTEA-LSHLHGLIVLRLRHLNINAIRDYSFKRLYR 201 (477)
T ss_dssp TTCTTCCEEEECCTTCC-EECTTSSTTCTTCCEEEEESCCC-SSCCHHH-HTTCTTCCEEEEESCCCCEECTTCSCSCTT
T ss_pred cccccCCEEECCCCccc-eeChhhccCCCCCCEEECCCCcC-cccChhH-hcccCCCcEEeCCCCcCcEeChhhcccCcc
Confidence 77777777777777533 33222 2256777777777763 3333322 34677777777777765432221 133344
Q ss_pred CceEEeccCcCccccccccCcccccccCCccceeeeecCCCcccccchhhHHHHhhhhhcCCCcccccEEEeecCCCchh
Q 002284 614 LKQLEIYNCDNLRTLTAEEGIHSSRRHTSLLECLEIHSCPSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKLES 693 (943)
Q Consensus 614 L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~~~~l~~ 693 (943)
|+.|++++|..+..++.. ... ..+|++|++++|...+.
T Consensus 202 L~~L~l~~~~~~~~~~~~-----------------------------------------~~~-~~~L~~L~l~~n~l~~~ 239 (477)
T 2id5_A 202 LKVLEISHWPYLDTMTPN-----------------------------------------CLY-GLNLTSLSITHCNLTAV 239 (477)
T ss_dssp CCEEEEECCTTCCEECTT-----------------------------------------TTT-TCCCSEEEEESSCCCSC
T ss_pred cceeeCCCCccccccCcc-----------------------------------------ccc-CccccEEECcCCccccc
Confidence 555555555444433310 000 13677777777654433
Q ss_pred hHhhhcccccccEEEeeccCCcccccccccCCCCccEEeccCCCCCcccCcCCccccccceeeeccccCCccCCCcCCCC
Q 002284 694 IVERLDNKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVIYGCKKLEALPEGMHNL 773 (943)
Q Consensus 694 ~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l 773 (943)
.+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|......|..+..+++|+.|++++|...+..+..+..+
T Consensus 240 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 319 (477)
T 2id5_A 240 PYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSV 319 (477)
T ss_dssp CHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCG
T ss_pred CHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCC
Confidence 33457777888888888887776666677778888888888886555556666677788888888876554444456777
Q ss_pred CCCCceeecCCCCC
Q 002284 774 SSLQYLTIGGVPSL 787 (943)
Q Consensus 774 ~~L~~L~l~~~~~l 787 (943)
++|++|++++|+..
T Consensus 320 ~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 320 GNLETLILDSNPLA 333 (477)
T ss_dssp GGCCEEECCSSCEE
T ss_pred cccCEEEccCCCcc
Confidence 88888888877743
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=4.2e-25 Score=257.60 Aligned_cols=283 Identities=18% Similarity=0.129 Sum_probs=194.3
Q ss_pred ccccccEEeecccCCCCCCcchhccchhhh-ccCcccEEEecCccccccC-ccccCCCCCceeecCCCcccccc-hhhhh
Q 002284 57 DIQHLRTLLPVTLLSSRPGYLARSILPRLL-KLQRLRVFSLRGYLISEVP-DSIGDLSYLRYLNLSGTQIRTLP-ESVNK 133 (943)
Q Consensus 57 ~~~~Lr~L~~~~~~~l~~~~~~~~~~~~~~-~l~~L~~L~L~~n~i~~lp-~~~~~l~~L~~L~Ls~n~i~~lp-~~i~~ 133 (943)
.+++++.+.+.++. .+.+|+.++ .+++|++|+|++|.++.+| .+|+.+++|++|+|++|.|+.+| ..|++
T Consensus 49 ~l~~l~~l~l~~~~-------l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 121 (597)
T 3oja_B 49 TLNNQKIVTFKNST-------MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQN 121 (597)
T ss_dssp GGCCCSEEEESSCE-------ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cCCCceEEEeeCCC-------CCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcC
Confidence 56788888775432 567888887 8999999999999999885 58999999999999999999986 56799
Q ss_pred ccccceeecCCCcccccccHH-HhccccCceEEcCCCCCCccccccccccccccccCceEeccCCCCCcccccCcccccC
Q 002284 134 LYNLHTLLLEGCRELKKKCAD-MGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCG 212 (943)
Q Consensus 134 L~~L~~L~L~~n~~~~~~p~~-~~~L~~L~~L~l~~n~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~ 212 (943)
+++|++|+|++|. +..+|.. |+++++|++|++++|.+.+..|..|+.+++|++|+...+.
T Consensus 122 l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~------------------ 182 (597)
T 3oja_B 122 VPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR------------------ 182 (597)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSC------------------
T ss_pred CCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCC------------------
Confidence 9999999999997 4455555 7999999999999999555455569999999988432221
Q ss_pred ceeecccccccCccchhhcccCCCCCCCeEEEEeecCCCCCCchhhhhHHhhhccCCCCCCcceEEEEeeCCCCCCcccC
Q 002284 213 TLNISKLENVKYVGDAMEAQLDGKKNLKVLMLEWTRSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLG 292 (943)
Q Consensus 213 ~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~ 292 (943)
+... .+..+++|+.|++++|.++ .+..+++|+.|+++++....+|..+
T Consensus 183 ------l~~~---------~~~~l~~L~~L~l~~n~l~----------------~l~~~~~L~~L~ls~n~l~~~~~~~- 230 (597)
T 3oja_B 183 ------LTHV---------DLSLIPSLFHANVSYNLLS----------------TLAIPIAVEELDASHNSINVVRGPV- 230 (597)
T ss_dssp ------CSBC---------CGGGCTTCSEEECCSSCCS----------------EEECCTTCSEEECCSSCCCEEECSC-
T ss_pred ------CCCc---------ChhhhhhhhhhhcccCccc----------------cccCCchhheeeccCCccccccccc-
Confidence 1000 0334566777777766653 2233456777777777766655443
Q ss_pred CCCcCCeeEEEEeCCCCCCCCCCCCCCCCCCeeEEecCcCceeeCccccCCCCCCCCCCcceeecccccccccccccccC
Q 002284 293 YSLFSNLVTLKFQDCSMCTSMPSVGQLPSLKHLEVRGMSRVKRLGSEFYGNDSPIPFPCLETLHFAEMQEWEEWIPHGCS 372 (943)
Q Consensus 293 ~~~l~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~ 372 (943)
.++|+.|++++|.+.+ ++.++.+++|++|++++|......+..+.+ +++|+.|++++|. +.. ++
T Consensus 231 ---~~~L~~L~L~~n~l~~-~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~------l~~L~~L~Ls~N~-l~~-----l~ 294 (597)
T 3oja_B 231 ---NVELTILKLQHNNLTD-TAWLLNYPGLVEVDLSYNELEKIMYHPFVK------MQRLERLYISNNR-LVA-----LN 294 (597)
T ss_dssp ---CSCCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCEEESGGGTT------CSSCCEEECTTSC-CCE-----EE
T ss_pred ---CCCCCEEECCCCCCCC-ChhhccCCCCCEEECCCCccCCCCHHHhcC------ccCCCEEECCCCC-CCC-----CC
Confidence 3577888888877765 346677777788888777655444444333 6677777777663 222 12
Q ss_pred CccccCCcccEEeeccCCCccCCCCCCCCCccEEEEeccCCCCccceEEeccCC
Q 002284 373 QEIEGFPKLRELHIVRCSKLQGTLPTHLTLLDILVVQNFTSLPALCKLRIDRCK 426 (943)
Q Consensus 373 ~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~~~~~~~l~~L~~L~l~~~~ 426 (943)
.....+++|++|++++ |.++ .+|.. +..+++|+.|++++|.
T Consensus 295 ~~~~~l~~L~~L~Ls~-N~l~-~i~~~-----------~~~l~~L~~L~L~~N~ 335 (597)
T 3oja_B 295 LYGQPIPTLKVLDLSH-NHLL-HVERN-----------QPQFDRLENLYLDHNS 335 (597)
T ss_dssp CSSSCCTTCCEEECCS-SCCC-CCGGG-----------HHHHTTCSEEECCSSC
T ss_pred cccccCCCCcEEECCC-CCCC-ccCcc-----------cccCCCCCEEECCCCC
Confidence 3345566777777777 4555 44432 2334555555555554
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=5.9e-24 Score=247.85 Aligned_cols=310 Identities=16% Similarity=0.162 Sum_probs=218.0
Q ss_pred cCCCCceeeeeEeecCccccccchhhhhhcccccCeEEeecCCCcccchhhhhhhcCccceeceEEEecCCCcCccchhc
Q 002284 457 QLPKLDELDISIIIDGLSYIWQNETQLLQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPKSL 536 (943)
Q Consensus 457 ~l~~L~~L~Ls~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 536 (943)
.+++++.++++ .+.+..+++..+..+++|+.|++++|. ++.++... |..+++|++|++++|.+.+..|..+
T Consensus 49 ~l~~l~~l~l~-----~~~l~~lp~~~~~~l~~L~~L~L~~n~-l~~~~~~~---~~~l~~L~~L~L~~n~l~~~~~~~~ 119 (597)
T 3oja_B 49 TLNNQKIVTFK-----NSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYA---FAYAHTIQKLYMGFNAIRYLPPHVF 119 (597)
T ss_dssp GGCCCSEEEES-----SCEESEECTHHHHHCCCCSEEECTTSC-CCEECTTT---TTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred cCCCceEEEee-----CCCCCCcCHHHHccCCCCcEEECCCCC-CCCCChHH---hcCCCCCCEEECCCCcCCCCCHHHH
Confidence 45566666666 344556666777778888888888775 55555433 7778888888888887666666677
Q ss_pred cCCCCcCeeeccCCCCCcccCCCC--CCCCccEEEEecCCCCCcCccccccCCCCCccEEEeecCCCcccccCcCCCCCC
Q 002284 537 LSLSSLTEMRIHNCSSLVSFPEAV--LPSQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLTYIAGVQLPPSL 614 (943)
Q Consensus 537 ~~l~~L~~L~L~~n~~l~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L 614 (943)
..+++|++|++++|. +..+|... .+++|++|++++|...+..|.. +.++++|++|++++|.+... + ...+++|
T Consensus 120 ~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~--~~~l~~L~~L~L~~N~l~~~-~-~~~l~~L 194 (597)
T 3oja_B 120 QNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT--FQATTSLQNLQLSSNRLTHV-D-LSLIPSL 194 (597)
T ss_dssp TTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTT--TTTCTTCCEEECTTSCCSBC-C-GGGCTTC
T ss_pred cCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhh--hhcCCcCcEEECcCCCCCCc-C-hhhhhhh
Confidence 788888888888885 44555543 3678888888888755444444 34778888888888765432 2 2345567
Q ss_pred ceEEeccCcCccccccccCcccccccCCccceeeeecCCCcccccchhhHHHHhhhhhcCCCcccccEEEeecCCCchhh
Q 002284 615 KQLEIYNCDNLRTLTAEEGIHSSRRHTSLLECLEIHSCPSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKLESI 694 (943)
Q Consensus 615 ~~L~l~~~~~L~~l~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~~~~l~~~ 694 (943)
+.|+++++ .+..+ ...++|+.|+++++. +..+ .+..+++|+.|++++|...+
T Consensus 195 ~~L~l~~n-~l~~l----------~~~~~L~~L~ls~n~-l~~~--------------~~~~~~~L~~L~L~~n~l~~-- 246 (597)
T 3oja_B 195 FHANVSYN-LLSTL----------AIPIAVEELDASHNS-INVV--------------RGPVNVELTILKLQHNNLTD-- 246 (597)
T ss_dssp SEEECCSS-CCSEE----------ECCTTCSEEECCSSC-CCEE--------------ECSCCSCCCEEECCSSCCCC--
T ss_pred hhhhcccC-ccccc----------cCCchhheeeccCCc-cccc--------------ccccCCCCCEEECCCCCCCC--
Confidence 77777776 33322 234467777776653 2222 12344678899998886554
Q ss_pred HhhhcccccccEEEeeccCCcccccccccCCCCccEEeccCCCCCcccCcCCccccccceeeeccccCCccCCCcCCCCC
Q 002284 695 VERLDNKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVIYGCKKLEALPEGMHNLS 774 (943)
Q Consensus 695 ~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~ 774 (943)
+..+..+++|+.|++++|.+.+..|..+..+++|++|+|++| .+..+|..+..+++|+.|++++|.. ..+|..+..++
T Consensus 247 ~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N~l-~~i~~~~~~l~ 324 (597)
T 3oja_B 247 TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNHL-LHVERNQPQFD 324 (597)
T ss_dssp CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSSCC-CCCGGGHHHHT
T ss_pred ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCCCC-CccCcccccCC
Confidence 356788889999999999888888888888999999999998 4566777777788999999999874 46777788888
Q ss_pred CCCceeecCCCCCccccCCCCCCCCcceEEecCCcchhc
Q 002284 775 SLQYLTIGGVPSLLCFTEDGLFPTNLHSLEIDGMKIWKS 813 (943)
Q Consensus 775 ~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~ 813 (943)
+|++|++++|.. ..++ ...+++|+.|++++|+....
T Consensus 325 ~L~~L~L~~N~l-~~~~--~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 325 RLENLYLDHNSI-VTLK--LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp TCSEEECCSSCC-CCCC--CCTTCCCSEEECCSSCEEHH
T ss_pred CCCEEECCCCCC-CCcC--hhhcCCCCEEEeeCCCCCCh
Confidence 999999988874 4444 23358888888888886543
No 41
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.90 E-value=2.3e-23 Score=224.40 Aligned_cols=194 Identities=19% Similarity=0.175 Sum_probs=116.0
Q ss_pred CcccEEEecCccccccCccccCCCCCceeecCCCcccccc-hhhhhccccceeecCCCcccccccHHHhccccCceEEcC
Q 002284 89 QRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLP-ESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNS 167 (943)
Q Consensus 89 ~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l~ 167 (943)
.++++++++++.++.+|..+. ++|++|++++|.|+.+| ..|+++++|++|++++|.+.+..|..|+++++|++|+++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred ccCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 367888888888888877664 57888888888888774 577888888888888877555557778888888888888
Q ss_pred CCCCCccccccccccccccccCceEeccCCCCCcccccCcccccCceeecccccccCccchhhcccCCCCCCCeEEEEee
Q 002284 168 NTDSLEEMPLGIGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGKKNLKVLMLEWT 247 (943)
Q Consensus 168 ~n~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n 247 (943)
+|. +..+|..+. ++|++|+...+ .+. ......+.++++|+.|++++|
T Consensus 111 ~n~-l~~l~~~~~--~~L~~L~l~~n------------------------~i~------~~~~~~~~~l~~L~~L~l~~n 157 (332)
T 2ft3_A 111 KNH-LVEIPPNLP--SSLVELRIHDN------------------------RIR------KVPKGVFSGLRNMNCIEMGGN 157 (332)
T ss_dssp SSC-CCSCCSSCC--TTCCEEECCSS------------------------CCC------CCCSGGGSSCSSCCEEECCSC
T ss_pred CCc-CCccCcccc--ccCCEEECCCC------------------------ccC------ccCHhHhCCCccCCEEECCCC
Confidence 887 666776544 45555521111 110 001112556667777777766
Q ss_pred cCCCCCCchhhhhHHhhhccCCCCCCcceEEEEeeCCCCCCcccCCCCcCCeeEEEEeCCCCCCCCC-CCCCCCCCCeeE
Q 002284 248 RSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSMP-SVGQLPSLKHLE 326 (943)
Q Consensus 248 ~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~l~~L~~L~ 326 (943)
.++.. ......+..+ +|+.|+++++....+|..+ .++|++|++++|.+.+..+ .+..+++|++|+
T Consensus 158 ~l~~~---------~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~----~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~ 223 (332)
T 2ft3_A 158 PLENS---------GFEPGAFDGL-KLNYLRISEAKLTGIPKDL----PETLNELHLDHNKIQAIELEDLLRYSKLYRLG 223 (332)
T ss_dssp CCBGG---------GSCTTSSCSC-CCSCCBCCSSBCSSCCSSS----CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCB
T ss_pred ccccC---------CCCcccccCC-ccCEEECcCCCCCccCccc----cCCCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence 65310 0011222333 5555555555555555433 2455566666665555443 455555555555
Q ss_pred EecCc
Q 002284 327 VRGMS 331 (943)
Q Consensus 327 L~~~~ 331 (943)
+++|.
T Consensus 224 L~~N~ 228 (332)
T 2ft3_A 224 LGHNQ 228 (332)
T ss_dssp CCSSC
T ss_pred CCCCc
Confidence 55554
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.90 E-value=1.9e-24 Score=229.83 Aligned_cols=249 Identities=18% Similarity=0.186 Sum_probs=140.5
Q ss_pred CceeEEEEEeccCcc--ccccccccccccccEEeecccCCCCCCcchhccchhhhccCcccEEEecCcccc-ccCccccC
Q 002284 34 RNLHHLSYIRGDYDG--VKRFEDLYDIQHLRTLLPVTLLSSRPGYLARSILPRLLKLQRLRVFSLRGYLIS-EVPDSIGD 110 (943)
Q Consensus 34 ~~~~~ls~~~~~~~~--~~~~~~~~~~~~Lr~L~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~-~lp~~~~~ 110 (943)
.+++++.+..+.+.. .. ...+.++++|++|.+.+ +|.+.+.+|..+.++++|++|++++|.++ .+|..|.+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~-~~~l~~l~~L~~L~L~~-----~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~ 123 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPI-PSSLANLPYLNFLYIGG-----INNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ 123 (313)
T ss_dssp CCEEEEEEECCCCSSCEEC-CGGGGGCTTCSEEEEEE-----ETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGG
T ss_pred ceEEEEECCCCCccCCccc-ChhHhCCCCCCeeeCCC-----CCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhC
Confidence 566777666655432 11 13455566666665542 12345555666556666666666666665 45666666
Q ss_pred CCCCceeecCCCccc-ccchhhhhccccceeecCCCcccccccHHHhccc-cCceEEcCCCCCCcccccccccccccccc
Q 002284 111 LSYLRYLNLSGTQIR-TLPESVNKLYNLHTLLLEGCRELKKKCADMGNLI-KLHHLNNSNTDSLEEMPLGIGKLTCLLTL 188 (943)
Q Consensus 111 l~~L~~L~Ls~n~i~-~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~-~L~~L~l~~n~~~~~~p~~~~~L~~L~~L 188 (943)
+++|++|+|++|.+. .+|..|+.+++|++|++++|.+.+.+|..+++++ +|++|++++|.+.+.+|..++.++ |+.|
T Consensus 124 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L 202 (313)
T 1ogq_A 124 IKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFV 202 (313)
T ss_dssp CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEE
T ss_pred CCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEE
Confidence 666666666666666 4566666666666666666655556666666665 666666666664445555555554 4444
Q ss_pred CceEeccCCCCCcccccCcccccCceeecccccccCccchhhcccCCCCCCCeEEEEeecCCCCCCchhhhhHHhhhccC
Q 002284 189 CNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGKKNLKVLMLEWTRSTNGLSSREAQTEKGVLDML 268 (943)
Q Consensus 189 ~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~l 268 (943)
++++|.+++. ....+
T Consensus 203 ------------------------------------------------------~Ls~N~l~~~-----------~~~~~ 217 (313)
T 1ogq_A 203 ------------------------------------------------------DLSRNMLEGD-----------ASVLF 217 (313)
T ss_dssp ------------------------------------------------------ECCSSEEEEC-----------CGGGC
T ss_pred ------------------------------------------------------ECcCCcccCc-----------CCHHH
Confidence 3333332110 11223
Q ss_pred CCCCCcceEEEEeeCCCCCCcccCCCCcCCeeEEEEeCCCCCCCCC-CCCCCCCCCeeEEecCcCceeeCccccCCCCCC
Q 002284 269 KPHRSLEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSMP-SVGQLPSLKHLEVRGMSRVKRLGSEFYGNDSPI 347 (943)
Q Consensus 269 ~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~ 347 (943)
..+++|+.|+++++.....+..+. .+++|++|++++|.+.+.+| .+..+++|++|++++|+..+.++.. +
T Consensus 218 ~~l~~L~~L~L~~N~l~~~~~~~~--~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~--~----- 288 (313)
T 1ogq_A 218 GSDKNTQKIHLAKNSLAFDLGKVG--LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG--G----- 288 (313)
T ss_dssp CTTSCCSEEECCSSEECCBGGGCC--CCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS--T-----
T ss_pred hcCCCCCEEECCCCceeeecCccc--ccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC--c-----
Confidence 333444444444443332222222 26677777777777766666 6677777777777777655454432 2
Q ss_pred CCCCcceeeccccccc
Q 002284 348 PFPCLETLHFAEMQEW 363 (943)
Q Consensus 348 ~~~~L~~L~l~~~~~l 363 (943)
.+++|+.+++.+|+.+
T Consensus 289 ~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 289 NLQRFDVSAYANNKCL 304 (313)
T ss_dssp TGGGSCGGGTCSSSEE
T ss_pred cccccChHHhcCCCCc
Confidence 1777777777777633
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.89 E-value=4e-22 Score=214.52 Aligned_cols=267 Identities=15% Similarity=0.168 Sum_probs=148.0
Q ss_pred cccCeEEeecCCCcccchhhhhhhcCccceeceEEEecCCCcCccchhccCCCCcCeeeccCCCCCcccCCCCCCCCccE
Q 002284 488 ATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPEAVLPSQLRV 567 (943)
Q Consensus 488 ~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~l~~~~~~~~~~~L~~ 567 (943)
++++.|++++|. ++.++... |..+++|++|++++|.+.+..|..+..+++|++|++++|. ++.+|... +++|++
T Consensus 52 ~~l~~L~L~~n~-i~~~~~~~---~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~-~~~L~~ 125 (330)
T 1xku_A 52 PDTALLDLQNNK-ITEIKDGD---FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKM-PKTLQE 125 (330)
T ss_dssp TTCCEEECCSSC-CCCBCTTT---TTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSC-CTTCCE
T ss_pred CCCeEEECCCCc-CCEeChhh---hccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-CCccChhh-cccccE
Confidence 456677777764 55555543 7788888888888887776668888888899999998886 45666543 378888
Q ss_pred EEEecCCCCCcCccccccCCCCCccEEEeecCCCcc--ccc-CcCCCCCCceEEeccCcCccccccccCcccccccCCcc
Q 002284 568 ISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLT--YIA-GVQLPPSLKQLEIYNCDNLRTLTAEEGIHSSRRHTSLL 644 (943)
Q Consensus 568 L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~-~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~L 644 (943)
|++++|......+.. +.++++|++|++++|.+.. ..+ .....++|+.|+++++ .++.++.
T Consensus 126 L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~-------------- 188 (330)
T 1xku_A 126 LRVHENEITKVRKSV--FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQ-------------- 188 (330)
T ss_dssp EECCSSCCCBBCHHH--HTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCS--------------
T ss_pred EECCCCcccccCHhH--hcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCC-ccccCCc--------------
Confidence 888888754433333 3578888888888887542 111 1122334444444443 1222210
Q ss_pred ceeeeecCCCcccccchhhHHHHhhhhhcCCCcccccEEEeecCCCchhhHhhhcccccccEEEeeccCCcccccccccC
Q 002284 645 ECLEIHSCPSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKLESIVERLDNKISLEVIEIVSCENLKMLPHGLHK 724 (943)
Q Consensus 645 ~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~ 724 (943)
.++++|++|++++|...+..+..+..+++|++|++++|.+.+..+..+..
T Consensus 189 ------------------------------~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 238 (330)
T 1xku_A 189 ------------------------------GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN 238 (330)
T ss_dssp ------------------------------SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG
T ss_pred ------------------------------cccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC
Confidence 01134555555554433333334444444444444444444433334444
Q ss_pred CCCccEEeccCCCCCcccCcCCccccccceeeeccccCCccCCCcCCCCCCCCceeecCCCCCccccCCCC-------CC
Q 002284 725 LWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVIYGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFTEDGL-------FP 797 (943)
Q Consensus 725 l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~-------~~ 797 (943)
+++|++|++++|. +..+|.++..+++|++|++++|+ ++.++...+ ..
T Consensus 239 ------------------------l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~ 292 (330)
T 1xku_A 239 ------------------------TPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKK 292 (330)
T ss_dssp ------------------------STTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTS
T ss_pred ------------------------CCCCCEEECCCCc-CccCChhhccCCCcCEEECCCCc-CCccChhhcCCccccccc
Confidence 4455555555543 23444445555555555555544 233322211 12
Q ss_pred CCcceEEecCCcchhccccccCCCCCCCccEEEecC
Q 002284 798 TNLHSLEIDGMKIWKSLMQLGGFHRYTSLRRLAISG 833 (943)
Q Consensus 798 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 833 (943)
+.|+.|++++|+..........+..+++|+.+++++
T Consensus 293 ~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~ 328 (330)
T 1xku_A 293 ASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGN 328 (330)
T ss_dssp CCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC--
T ss_pred ccccceEeecCcccccccCccccccccceeEEEecc
Confidence 556666666666543322233566677777777765
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.89 E-value=2.2e-22 Score=216.72 Aligned_cols=273 Identities=17% Similarity=0.141 Sum_probs=152.1
Q ss_pred cccCeEEeecCCCcccchhhhhhhcCccceeceEEEecCCCcCccchhccCCCCcCeeeccCCCCCcccCCCCCCCCccE
Q 002284 488 ATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPEAVLPSQLRV 567 (943)
Q Consensus 488 ~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~l~~~~~~~~~~~L~~ 567 (943)
++++.|++++|. ++.++... |..+++|++|++++|.+.+..|.++..+++|++|++++|. ++.+|.... ++|++
T Consensus 54 ~~l~~L~l~~n~-i~~~~~~~---~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~-~~L~~ 127 (332)
T 2ft3_A 54 PDTTLLDLQNND-ISELRKDD---FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH-LVEIPPNLP-SSLVE 127 (332)
T ss_dssp TTCCEEECCSSC-CCEECTTT---TTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC-CCSCCSSCC-TTCCE
T ss_pred CCCeEEECCCCc-CCccCHhH---hhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc-CCccCcccc-ccCCE
Confidence 466777777774 55555433 7888889999999887776668888889999999999886 456665444 78999
Q ss_pred EEEecCCCCCcCccccccCCCCCccEEEeecCCCcc--cccCc-CCCCCCceEEeccCcCccccccccCcccccccCCcc
Q 002284 568 ISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLT--YIAGV-QLPPSLKQLEIYNCDNLRTLTAEEGIHSSRRHTSLL 644 (943)
Q Consensus 568 L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~-~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~L 644 (943)
|++++|... .++... +.++++|++|++++|.+.. ..+.. ... +|+.|+++++ .++.++.
T Consensus 128 L~l~~n~i~-~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n-~l~~l~~-------------- 189 (332)
T 2ft3_A 128 LRIHDNRIR-KVPKGV-FSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA-KLTGIPK-------------- 189 (332)
T ss_dssp EECCSSCCC-CCCSGG-GSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSS-BCSSCCS--------------
T ss_pred EECCCCccC-ccCHhH-hCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCC-CCCccCc--------------
Confidence 999988844 444432 4578999999999987642 11111 111 4555555554 2222221
Q ss_pred ceeeeecCCCcccccchhhHHHHhhhhhcCCCcccccEEEeecCCCchhhHhhhcccccccEEEeeccCCcccccccccC
Q 002284 645 ECLEIHSCPSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKLESIVERLDNKISLEVIEIVSCENLKMLPHGLHK 724 (943)
Q Consensus 645 ~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~ 724 (943)
.++++|++|++++|...+..+..+..+++|++|++++|.+.+..+..+..
T Consensus 190 ------------------------------~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~ 239 (332)
T 2ft3_A 190 ------------------------------DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF 239 (332)
T ss_dssp ------------------------------SSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG
T ss_pred ------------------------------cccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhC
Confidence 11134555555554433333334444555555555555444444444445
Q ss_pred CCCccEEeccCCCCCcccCcCCccccccceeeeccccCCccCCCcCCCCCCCCceeecCCCCCccccCCCCCCCCcceEE
Q 002284 725 LWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVIYGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFTEDGLFPTNLHSLE 804 (943)
Q Consensus 725 l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 804 (943)
+++|++|++++| .++.+|..+..+++|+.|++++|+..+.-+..+.... .....+.|+.|+
T Consensus 240 l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~------------------~~~~~~~l~~L~ 300 (332)
T 2ft3_A 240 LPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVG------------------FGVKRAYYNGIS 300 (332)
T ss_dssp CTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSS------------------CCSSSCCBSEEE
T ss_pred CCCCCEEECCCC-cCeecChhhhcCccCCEEECCCCCCCccChhHccccc------------------cccccccccceE
Confidence 555555555554 2334444444444555555555443222222221110 000124566666
Q ss_pred ecCCcchhccccccCCCCCCCccEEEecC
Q 002284 805 IDGMKIWKSLMQLGGFHRYTSLRRLAISG 833 (943)
Q Consensus 805 l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 833 (943)
+++|+..........+..+++|+.+++++
T Consensus 301 l~~N~~~~~~~~~~~~~~l~~L~~l~l~~ 329 (332)
T 2ft3_A 301 LFNNPVPYWEVQPATFRCVTDRLAIQFGN 329 (332)
T ss_dssp CCSSSSCGGGSCGGGGTTBCCSTTEEC--
T ss_pred eecCcccccccCcccccccchhhhhhccc
Confidence 66666543222233566677777777766
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.89 E-value=8.5e-23 Score=218.36 Aligned_cols=191 Identities=21% Similarity=0.296 Sum_probs=140.2
Q ss_pred ccCcccEEEecCccccccCccccCCCCCceeecCCCcccccchhhhhccccceeecCCCcccccccHHHhccccCceEEc
Q 002284 87 KLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNN 166 (943)
Q Consensus 87 ~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l 166 (943)
...++++|+|++|.++.+|..++++++|++|+|++|.++.+|..++++++|++|++++|. +..+|..|+++++|++|++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELSI 157 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCEEEC
Confidence 568999999999999999999999999999999999999999999999999999999997 4588999999999999999
Q ss_pred CCCCCCccccccccccccccccCceEeccCCCCCcccccCcccccCceeecccccccCccchhhcccCCCCCCCeEEEEe
Q 002284 167 SNTDSLEEMPLGIGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGKKNLKVLMLEW 246 (943)
Q Consensus 167 ~~n~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 246 (943)
++|...+.+|..++...- ...+.++++|+.|++++
T Consensus 158 ~~n~~~~~~p~~~~~~~~---------------------------------------------~~~~~~l~~L~~L~L~~ 192 (328)
T 4fcg_A 158 RACPELTELPEPLASTDA---------------------------------------------SGEHQGLVNLQSLRLEW 192 (328)
T ss_dssp EEETTCCCCCSCSEEEC----------------------------------------------CCCEEESTTCCEEEEEE
T ss_pred CCCCCccccChhHhhccc---------------------------------------------hhhhccCCCCCEEECcC
Confidence 998878888876543110 01144567778888887
Q ss_pred ecCCCCCCchhhhhHHhhhccCCCCCCcceEEEEeeCCCCCCcccCCCCcCCeeEEEEeCCCCCCCCC-CCCCCCCCCee
Q 002284 247 TRSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSMP-SVGQLPSLKHL 325 (943)
Q Consensus 247 n~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~l~~L~~L 325 (943)
|.++.++ ..+..+++|+.|+++++....+|..+.. +++|++|++++|.+.+.+| .++.+++|++|
T Consensus 193 n~l~~lp------------~~l~~l~~L~~L~L~~N~l~~l~~~l~~--l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L 258 (328)
T 4fcg_A 193 TGIRSLP------------ASIANLQNLKSLKIRNSPLSALGPAIHH--LPKLEELDLRGCTALRNYPPIFGGRAPLKRL 258 (328)
T ss_dssp ECCCCCC------------GGGGGCTTCCEEEEESSCCCCCCGGGGG--CTTCCEEECTTCTTCCBCCCCTTCCCCCCEE
T ss_pred CCcCcch------------HhhcCCCCCCEEEccCCCCCcCchhhcc--CCCCCEEECcCCcchhhhHHHhcCCCCCCEE
Confidence 7764221 2234455666666666665555555433 5666666666666666555 55666666666
Q ss_pred EEecCcCceeeC
Q 002284 326 EVRGMSRVKRLG 337 (943)
Q Consensus 326 ~L~~~~~~~~~~ 337 (943)
++++|...+.++
T Consensus 259 ~L~~n~~~~~~p 270 (328)
T 4fcg_A 259 ILKDCSNLLTLP 270 (328)
T ss_dssp ECTTCTTCCBCC
T ss_pred ECCCCCchhhcc
Confidence 666665444443
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.89 E-value=1.8e-22 Score=217.33 Aligned_cols=137 Identities=12% Similarity=0.095 Sum_probs=91.4
Q ss_pred CCCCCCcceEEEEeeCCCCCCcccCCCCcCCeeEEEEeCCCCCCCCC-CCCCCCCCCeeEEecCcCceeeCccccCCCCC
Q 002284 268 LKPHRSLEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSMP-SVGQLPSLKHLEVRGMSRVKRLGSEFYGNDSP 346 (943)
Q Consensus 268 l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~ 346 (943)
+..+++|+.|+++++....+|..+ .++|++|++++|.+.+..+ .+..+++|++|++++|......+..+..
T Consensus 167 ~~~l~~L~~L~l~~n~l~~l~~~~----~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~---- 238 (330)
T 1xku_A 167 FQGMKKLSYIRIADTNITTIPQGL----PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN---- 238 (330)
T ss_dssp GGGCTTCCEEECCSSCCCSCCSSC----CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG----
T ss_pred ccCCCCcCEEECCCCccccCCccc----cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC----
Confidence 444566777777776666676654 3788899999988877666 7888889999999888754433333333
Q ss_pred CCCCCcceeecccccccccccccccCCccccCCcccEEeeccCCCccCCCCC-CCCCccEEEEeccCCCCccceEEeccC
Q 002284 347 IPFPCLETLHFAEMQEWEEWIPHGCSQEIEGFPKLRELHIVRCSKLQGTLPT-HLTLLDILVVQNFTSLPALCKLRIDRC 425 (943)
Q Consensus 347 ~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~-~l~~L~~L~~~~~~~l~~L~~L~l~~~ 425 (943)
+++|++|++++|. +.. +|..+..+++|++|++++ |+++ .+|. .+..... ....+.++.+++.+|
T Consensus 239 --l~~L~~L~L~~N~-l~~-----lp~~l~~l~~L~~L~l~~-N~i~-~~~~~~f~~~~~-----~~~~~~l~~l~l~~N 303 (330)
T 1xku_A 239 --TPHLRELHLNNNK-LVK-----VPGGLADHKYIQVVYLHN-NNIS-AIGSNDFCPPGY-----NTKKASYSGVSLFSN 303 (330)
T ss_dssp --STTCCEEECCSSC-CSS-----CCTTTTTCSSCCEEECCS-SCCC-CCCTTSSSCSSC-----CTTSCCCSEEECCSS
T ss_pred --CCCCCEEECCCCc-Ccc-----CChhhccCCCcCEEECCC-CcCC-ccChhhcCCccc-----ccccccccceEeecC
Confidence 7888888888874 222 455677888999999998 6787 4543 2211100 112456677777777
Q ss_pred Cc
Q 002284 426 KK 427 (943)
Q Consensus 426 ~~ 427 (943)
+.
T Consensus 304 ~~ 305 (330)
T 1xku_A 304 PV 305 (330)
T ss_dssp SS
T ss_pred cc
Confidence 64
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.87 E-value=1.4e-22 Score=215.55 Aligned_cols=252 Identities=12% Similarity=0.044 Sum_probs=139.0
Q ss_pred cccCeEEeecCCCcc--cchhhhhhhcCccceeceEEEec-CCCcCccchhccCCCCcCeeeccCCCCCcccCCC-CCCC
Q 002284 488 ATLKRLKIERCPKLQ--FLEEEDQWQFGLSFRLEHLELIN-CQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPEA-VLPS 563 (943)
Q Consensus 488 ~~L~~L~l~~~~~l~--~l~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~L~~n~~l~~~~~~-~~~~ 563 (943)
.+++.|++++|..-. .++.. +..+++|++|++++ |.+.+.+|..+..+++|++|++++|...+.+|.. ..++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~----l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 125 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSS----LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGG----GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred ceEEEEECCCCCccCCcccChh----HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCC
Confidence 456666666664322 33332 56666666666663 5555566666666666666666666544344432 2245
Q ss_pred CccEEEEecCCCCCcCccccccCCCCCccEEEeecCCCcccccCcCCCCCCceEEeccCcCccccccccCcccccccCCc
Q 002284 564 QLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLTYIAGVQLPPSLKQLEIYNCDNLRTLTAEEGIHSSRRHTSL 643 (943)
Q Consensus 564 ~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~ 643 (943)
+|++|++++|...+.+|..+ ..+++|++|++++|.+.+.+|..
T Consensus 126 ~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p~~----------------------------------- 168 (313)
T 1ogq_A 126 TLVTLDFSYNALSGTLPPSI--SSLPNLVGITFDGNRISGAIPDS----------------------------------- 168 (313)
T ss_dssp TCCEEECCSSEEESCCCGGG--GGCTTCCEEECCSSCCEEECCGG-----------------------------------
T ss_pred CCCEEeCCCCccCCcCChHH--hcCCCCCeEECcCCcccCcCCHH-----------------------------------
Confidence 56666666665444455442 25566666666665544333221
Q ss_pred cceeeeecCCCcccccchhhHHHHhhhhhcCCCcccccEEEeecCCCchhhHhhhcccccccEEEeeccCCccccccccc
Q 002284 644 LECLEIHSCPSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKLESIVERLDNKISLEVIEIVSCENLKMLPHGLH 723 (943)
Q Consensus 644 L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~ 723 (943)
.+.+++.|++|++++|...+.+|..+..++ |++|++++|.+.+..|..+.
T Consensus 169 -----------------------------l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~ 218 (313)
T 1ogq_A 169 -----------------------------YGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFG 218 (313)
T ss_dssp -----------------------------GGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCC
T ss_pred -----------------------------HhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHh
Confidence 111212455555555544444455555554 66666666666655666666
Q ss_pred CCCCccEEeccCCCCCcccCcCCccccccceeeeccccCCccCCCcCCCCCCCCceeecCCCCCccccCCCCCCCCcceE
Q 002284 724 KLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVIYGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFTEDGLFPTNLHSL 803 (943)
Q Consensus 724 ~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L 803 (943)
.+++|++|++++|...+.+|. +..+++|++|++++|...+.+|..+..+++|++|++++|+....+|.. ..+++|+.+
T Consensus 219 ~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l 296 (313)
T 1ogq_A 219 SDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVS 296 (313)
T ss_dssp TTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGG
T ss_pred cCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChH
Confidence 666666666666644333333 444566666666666655566666666666666666666544455544 335666666
Q ss_pred EecCCcchh
Q 002284 804 EIDGMKIWK 812 (943)
Q Consensus 804 ~l~~c~~l~ 812 (943)
++++|+.+.
T Consensus 297 ~l~~N~~lc 305 (313)
T 1ogq_A 297 AYANNKCLC 305 (313)
T ss_dssp GTCSSSEEE
T ss_pred HhcCCCCcc
Confidence 666665443
No 48
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.87 E-value=2e-23 Score=244.91 Aligned_cols=84 Identities=23% Similarity=0.243 Sum_probs=48.5
Q ss_pred ccCcccEEEecCcccccc-CccccCC--CCCceeecCCCc-cc--ccchhhhhccccceeecCCCccccc----ccHHHh
Q 002284 87 KLQRLRVFSLRGYLISEV-PDSIGDL--SYLRYLNLSGTQ-IR--TLPESVNKLYNLHTLLLEGCRELKK----KCADMG 156 (943)
Q Consensus 87 ~l~~L~~L~L~~n~i~~l-p~~~~~l--~~L~~L~Ls~n~-i~--~lp~~i~~L~~L~~L~L~~n~~~~~----~p~~~~ 156 (943)
.+++|++|+|++|.++.. +..+... .+|++|+|++|. +. .++..+.++++|++|+|++|...+. ++..+.
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 667777777777665432 3334332 337777777664 22 2233345667777777777654333 334455
Q ss_pred ccccCceEEcCCCC
Q 002284 157 NLIKLHHLNNSNTD 170 (943)
Q Consensus 157 ~L~~L~~L~l~~n~ 170 (943)
.+++|++|++++|.
T Consensus 190 ~~~~L~~L~L~~n~ 203 (592)
T 3ogk_B 190 HNTSLEVLNFYMTE 203 (592)
T ss_dssp HCCCCCEEECTTCC
T ss_pred cCCCccEEEeeccC
Confidence 66777777777666
No 49
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.86 E-value=3.4e-23 Score=243.00 Aligned_cols=377 Identities=16% Similarity=0.110 Sum_probs=185.1
Q ss_pred cCCcccEEeeccCCCccCCCCCCCCCccEEEEeccCCCCc-cceEEeccCCceeeecc----CcccchhhhccccccccC
Q 002284 377 GFPKLRELHIVRCSKLQGTLPTHLTLLDILVVQNFTSLPA-LCKLRIDRCKKVVWRST----TDCESQLYKDISNQMFLG 451 (943)
Q Consensus 377 ~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~~~~~~~l~~-L~~L~l~~~~~~~~~~~----~~~~~l~~l~ls~n~l~~ 451 (943)
.+++|++|++++| .+++..+..+. ..++. |++|++.+|.......+ ..+++|++|++++|.+++
T Consensus 110 ~~~~L~~L~L~~~-~i~~~~~~~l~----------~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~ 178 (592)
T 3ogk_B 110 NLRQLKSVHFRRM-IVSDLDLDRLA----------KARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSE 178 (592)
T ss_dssp HCTTCCEEEEESC-BCCHHHHHHHH----------HHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEEC
T ss_pred hCCCCCeEEeecc-EecHHHHHHHH----------HhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccC
Confidence 5777888888774 44422221110 11334 77777777764432222 134444555555444433
Q ss_pred CCccccCCCCceeeeeEeecCccccccchhhhhhcccccCeEEeecCCCcccchh-hhhhhcCccceeceEEEecCCCcC
Q 002284 452 GPLKLQLPKLDELDISIIIDGLSYIWQNETQLLQDIATLKRLKIERCPKLQFLEE-EDQWQFGLSFRLEHLELINCQDLE 530 (943)
Q Consensus 452 ~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~~l~~L~~L~l~~~~~~~ 530 (943)
.... .-......+++|++|++++|. ++.+.. .....+..+++|++|++++|...
T Consensus 179 ~~~~-----------------------~l~~~~~~~~~L~~L~L~~n~-~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~- 233 (592)
T 3ogk_B 179 KDGK-----------------------WLHELAQHNTSLEVLNFYMTE-FAKISPKDLETIARNCRSLVSVKVGDFEIL- 233 (592)
T ss_dssp CCSH-----------------------HHHHHHHHCCCCCEEECTTCC-CSSCCHHHHHHHHHHCTTCCEEECSSCBGG-
T ss_pred cchh-----------------------HHHHHHhcCCCccEEEeeccC-CCccCHHHHHHHHhhCCCCcEEeccCccHH-
Confidence 2100 011233456666666666664 221111 11111455677777777777543
Q ss_pred ccchhccCCCCcCeeeccCCCCCcc----cCCCCCCCCccEEEEecCCCCCcCccccccCCCCCccEEEeecCCCccccc
Q 002284 531 KLPKSLLSLSSLTEMRIHNCSSLVS----FPEAVLPSQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLTYIA 606 (943)
Q Consensus 531 ~~~~~~~~l~~L~~L~L~~n~~l~~----~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 606 (943)
.+|..+..+++|++|+++++..... ......+++|+.++++++. ...++.. +..+++|++|++++|.+.....
T Consensus 234 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~l~~~--~~~~~~L~~L~Ls~~~l~~~~~ 310 (592)
T 3ogk_B 234 ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNEMPIL--FPFAAQIRKLDLLYALLETEDH 310 (592)
T ss_dssp GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTTGGGG--GGGGGGCCEEEETTCCCCHHHH
T ss_pred HHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhHHHHH--HhhcCCCcEEecCCCcCCHHHH
Confidence 3666677777777777775332211 1112335677777777653 3444444 2367788888888877332211
Q ss_pred -C-cCCCCCCceEEeccCcCccccccccCcccccccCCccceeeeec----------CCCcccccchhhHHHHhhhhhcC
Q 002284 607 -G-VQLPPSLKQLEIYNCDNLRTLTAEEGIHSSRRHTSLLECLEIHS----------CPSLTCLISKNELRAALDYLVVG 674 (943)
Q Consensus 607 -~-~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~L~~L~i~~----------c~~l~~~~~~~~~~~~~~~~~~~ 674 (943)
. ...+++|+.|++.++ +.. .+.......+++|+.|++.+ |..++.. .+.... .
T Consensus 311 ~~~~~~~~~L~~L~L~~~--~~~----~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~----~~~~l~-----~ 375 (592)
T 3ogk_B 311 CTLIQKCPNLEVLETRNV--IGD----RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQR----GLIALA-----Q 375 (592)
T ss_dssp HHHHTTCTTCCEEEEEGG--GHH----HHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHH----HHHHHH-----H
T ss_pred HHHHHhCcCCCEEeccCc--cCH----HHHHHHHHhCCCCCEEEeecCccccccccccCccCHH----HHHHHH-----h
Confidence 1 244567888877743 111 11112224566677777774 5554422 010000 1
Q ss_pred CCcccccEEEeecCCCchhhHhhhcc-cccccEEEeec---cCCccc------ccccccCCCCccEEeccCCCC--Cccc
Q 002284 675 NLPQALKFLSIWHCSKLESIVERLDN-KISLEVIEIVS---CENLKM------LPHGLHKLWHLQEIDIQDCEN--LVSF 742 (943)
Q Consensus 675 ~lp~~L~~L~l~~~~~l~~~~~~~~~-l~~L~~L~l~~---~~~~~~------~p~~~~~l~~L~~L~l~~~~~--l~~~ 742 (943)
.+ ++|++|+++.+......+..+.. +++|+.|++++ |+.++. ++..+.++++|++|++++|.. ....
T Consensus 376 ~~-~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~ 454 (592)
T 3ogk_B 376 GC-QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLG 454 (592)
T ss_dssp HC-TTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHH
T ss_pred hC-ccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHH
Confidence 12 45777777554444444444433 66677777763 223332 222344566677777665532 1111
Q ss_pred CcCC-ccccccceeeeccccCCc-cCCCcCCCCCCCCceeecCCCCCcc--ccCCCCCCCCcceEEecCCc
Q 002284 743 PEGG-LLSAKLKRLVIYGCKKLE-ALPEGMHNLSSLQYLTIGGVPSLLC--FTEDGLFPTNLHSLEIDGMK 809 (943)
Q Consensus 743 p~~~-~~l~~L~~L~l~~~~~l~-~~p~~~~~l~~L~~L~l~~~~~l~~--~~~~~~~~~~L~~L~l~~c~ 809 (943)
+..+ ..+++|+.|++++|...+ .++..+..+++|++|++++|+ ++. ++.....+++|++|++++|+
T Consensus 455 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 455 LSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred HHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 1111 124566666666665433 223333555666666666665 221 11111123555555555555
No 50
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.86 E-value=7.4e-21 Score=203.27 Aligned_cols=229 Identities=23% Similarity=0.265 Sum_probs=135.2
Q ss_pred cceeceEEEecCCCcCccchhccCCCCcCeeeccCCCCCcccCCC-CCCCCccEEEEecCCCCCcCccccccCCCCCccE
Q 002284 515 SFRLEHLELINCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPEA-VLPSQLRVISIWDSGALKFLPEAWMLDNNSSLEI 593 (943)
Q Consensus 515 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~l~~~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~ 593 (943)
.++++.|++++|.+. .+|..+..+++|++|++++|... .+|.. ..+++|++|++++|... .+|..+ .++++|++
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l--~~l~~L~~ 154 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASI--ASLNRLRE 154 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGG--GGCTTCCE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHH--hcCcCCCE
Confidence 356777777777543 66666667777777777777543 55542 23566777777776633 566553 46788888
Q ss_pred EEeecCCCcccccCcCCCCCCceEEeccCcCccccccccCcccccccCCccceeeeecCCCcccccchhhHHHHhhhhhc
Q 002284 594 LDIRHCHLLTYIAGVQLPPSLKQLEIYNCDNLRTLTAEEGIHSSRRHTSLLECLEIHSCPSLTCLISKNELRAALDYLVV 673 (943)
Q Consensus 594 L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~ 673 (943)
|++++|...+.+|.. +....+.+ .+
T Consensus 155 L~L~~n~~~~~~p~~-----~~~~~~~~--------------------------------------------------~~ 179 (328)
T 4fcg_A 155 LSIRACPELTELPEP-----LASTDASG--------------------------------------------------EH 179 (328)
T ss_dssp EEEEEETTCCCCCSC-----SEEEC-CC--------------------------------------------------CE
T ss_pred EECCCCCCccccChh-----Hhhccchh--------------------------------------------------hh
Confidence 888887766544421 11111100 00
Q ss_pred CCCcccccEEEeecCCCchhhHhhhcccccccEEEeeccCCcccccccccCCCCccEEeccCCCCCcccCcCCccccccc
Q 002284 674 GNLPQALKFLSIWHCSKLESIVERLDNKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEGGLLSAKLK 753 (943)
Q Consensus 674 ~~lp~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~ 753 (943)
..+ ++|++|++++|.. +.+|..+..+++|++|++++|.+.+ +|..+..+++|++|++++|...+.+|..+..+++|+
T Consensus 180 ~~l-~~L~~L~L~~n~l-~~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~ 256 (328)
T 4fcg_A 180 QGL-VNLQSLRLEWTGI-RSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK 256 (328)
T ss_dssp EES-TTCCEEEEEEECC-CCCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCC
T ss_pred ccC-CCCCEEECcCCCc-CcchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCC
Confidence 011 3566666666533 3555556666666666666666554 444566666666666666666666666666666666
Q ss_pred eeeeccccCCccCCCcCCCCCCCCceeecCCCCCccccCCCCCCCCcceEEec
Q 002284 754 RLVIYGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFTEDGLFPTNLHSLEID 806 (943)
Q Consensus 754 ~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~ 806 (943)
+|++++|...+.+|..+..+++|++|++++|+.++.+|.....+++|+.+++.
T Consensus 257 ~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 257 RLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp EEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred EEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence 66666666666666666666666666666666666666554444444444443
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.85 E-value=1.6e-20 Score=203.99 Aligned_cols=87 Identities=18% Similarity=0.249 Sum_probs=58.0
Q ss_pred ccCcccEEEecCccccccCccccCCCCCceeecCCCcccccch-hhhhccccceeecCCCcccccccHHHhccccCceEE
Q 002284 87 KLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPE-SVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLN 165 (943)
Q Consensus 87 ~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~ 165 (943)
.++...+.+++++.++.+|..+. ++|++|++++|.++.+|. .|+++++|++|++++|.+.+..|..|+++++|++|+
T Consensus 29 ~C~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp EECTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 45555566777777777776554 367777777777777754 677777777777777765454455677777777777
Q ss_pred cCCCCCCcccc
Q 002284 166 NSNTDSLEEMP 176 (943)
Q Consensus 166 l~~n~~~~~~p 176 (943)
+++|. +..+|
T Consensus 107 Ls~n~-l~~~~ 116 (353)
T 2z80_A 107 LSYNY-LSNLS 116 (353)
T ss_dssp CCSSC-CSSCC
T ss_pred CCCCc-CCcCC
Confidence 77776 44443
No 52
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.83 E-value=2.1e-22 Score=228.31 Aligned_cols=84 Identities=20% Similarity=0.255 Sum_probs=43.1
Q ss_pred ccCcccEEEecCcccc-----ccCccccCCCCCceeecCCCccccc-chhh-hhcc----ccceeecCCCcccc----cc
Q 002284 87 KLQRLRVFSLRGYLIS-----EVPDSIGDLSYLRYLNLSGTQIRTL-PESV-NKLY----NLHTLLLEGCRELK----KK 151 (943)
Q Consensus 87 ~l~~L~~L~L~~n~i~-----~lp~~~~~l~~L~~L~Ls~n~i~~l-p~~i-~~L~----~L~~L~L~~n~~~~----~~ 151 (943)
.+++|++|++++|.++ .++..+..+++|++|+|++|.+... +..+ ..+. +|++|++++|.+.. .+
T Consensus 26 ~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l 105 (461)
T 1z7x_W 26 LLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL 105 (461)
T ss_dssp HHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred hcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHH
Confidence 5555555555555544 2344455555555555555555432 2222 2233 45555555554331 33
Q ss_pred cHHHhccccCceEEcCCCC
Q 002284 152 CADMGNLIKLHHLNNSNTD 170 (943)
Q Consensus 152 p~~~~~L~~L~~L~l~~n~ 170 (943)
|..+.++++|++|++++|.
T Consensus 106 ~~~l~~~~~L~~L~Ls~n~ 124 (461)
T 1z7x_W 106 SSTLRTLPTLQELHLSDNL 124 (461)
T ss_dssp HHHTTSCTTCCEEECCSSB
T ss_pred HHHHccCCceeEEECCCCc
Confidence 5555555555555555555
No 53
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.82 E-value=3.9e-23 Score=234.34 Aligned_cols=36 Identities=8% Similarity=0.015 Sum_probs=25.6
Q ss_pred cCCeeEEEEeCCCCCCCCC--CCCCCCCCCeeEEecCc
Q 002284 296 FSNLVTLKFQDCSMCTSMP--SVGQLPSLKHLEVRGMS 331 (943)
Q Consensus 296 l~~L~~L~L~~n~~~~~~~--~~~~l~~L~~L~L~~~~ 331 (943)
.++|++|++++|.+..... .+..+++|++|++++|.
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~ 39 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCG 39 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCC
Confidence 4568888888888754322 25667788888888876
No 54
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.82 E-value=1.7e-19 Score=207.21 Aligned_cols=81 Identities=19% Similarity=0.201 Sum_probs=59.9
Q ss_pred ccCcccEEEecCccccccCccccCCCCCceeecCCCcccccchhhhhccccceeecCCCcccccccHHHhccccCceEEc
Q 002284 87 KLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNN 166 (943)
Q Consensus 87 ~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l 166 (943)
....+++|++++|.++.+|..+. ++|++|+|++|.|+.+|. .+++|++|++++|. +..+|. .+++|++|++
T Consensus 38 ~~~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 38 LNNGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ-LTSLPV---LPPGLLELSI 108 (622)
T ss_dssp HHHCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCC-CSCCCC---CCTTCCEEEE
T ss_pred cCCCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCc-CCcCCC---CCCCCCEEEC
Confidence 33457888888888888887665 688888888888888876 56788888888875 555665 6778888888
Q ss_pred CCCCCCccccc
Q 002284 167 SNTDSLEEMPL 177 (943)
Q Consensus 167 ~~n~~~~~~p~ 177 (943)
++|. +..+|.
T Consensus 109 s~N~-l~~l~~ 118 (622)
T 3g06_A 109 FSNP-LTHLPA 118 (622)
T ss_dssp CSCC-CCCCCC
T ss_pred cCCc-CCCCCC
Confidence 8877 555543
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.81 E-value=2.9e-19 Score=201.06 Aligned_cols=108 Identities=27% Similarity=0.392 Sum_probs=68.5
Q ss_pred cCCeeEEEEeCCCCCCCCCCCCCCCCCCeeEEecCcCceeeCccccCCCCCCCCCCcceeecccccccccccccccCCcc
Q 002284 296 FSNLVTLKFQDCSMCTSMPSVGQLPSLKHLEVRGMSRVKRLGSEFYGNDSPIPFPCLETLHFAEMQEWEEWIPHGCSQEI 375 (943)
Q Consensus 296 l~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~ 375 (943)
+++|++|++++|.+.+ +|.+..+++|++|++++|......+..+.+ +++|+.|++++|. +... .+..+
T Consensus 195 l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------l~~L~~L~L~~n~-l~~~----~~~~~ 262 (452)
T 3zyi_A 195 LFNLKYLNLGMCNIKD-MPNLTPLVGLEELEMSGNHFPEIRPGSFHG------LSSLKKLWVMNSQ-VSLI----ERNAF 262 (452)
T ss_dssp CTTCCEEECTTSCCSS-CCCCTTCTTCCEEECTTSCCSEECGGGGTT------CTTCCEEECTTSC-CCEE----CTTTT
T ss_pred CCCCCEEECCCCcccc-cccccccccccEEECcCCcCcccCcccccC------ccCCCEEEeCCCc-CceE----CHHHh
Confidence 5666666666666643 355666667777777776644443333333 6667777776664 2221 24556
Q ss_pred ccCCcccEEeeccCCCccCCCCCCCCCccEEEEeccCCCCccceEEeccCCc
Q 002284 376 EGFPKLRELHIVRCSKLQGTLPTHLTLLDILVVQNFTSLPALCKLRIDRCKK 427 (943)
Q Consensus 376 ~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~~~~~~~l~~L~~L~l~~~~~ 427 (943)
..+++|++|++++ |+++ .+|... +..+++|+.|++++|+.
T Consensus 263 ~~l~~L~~L~L~~-N~l~-~~~~~~----------~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 263 DGLASLVELNLAH-NNLS-SLPHDL----------FTPLRYLVELHLHHNPW 302 (452)
T ss_dssp TTCTTCCEEECCS-SCCS-CCCTTS----------STTCTTCCEEECCSSCE
T ss_pred cCCCCCCEEECCC-CcCC-ccChHH----------hccccCCCEEEccCCCc
Confidence 7788888888888 6787 566544 55677788888877763
No 56
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.81 E-value=4e-19 Score=199.10 Aligned_cols=233 Identities=24% Similarity=0.277 Sum_probs=123.2
Q ss_pred ccchhhhccCcccEEEecCcccccc-CccccCCCCCceeecCCCcccccc-hhhhhccccceeecCCCcccccccHHHhc
Q 002284 80 SILPRLLKLQRLRVFSLRGYLISEV-PDSIGDLSYLRYLNLSGTQIRTLP-ESVNKLYNLHTLLLEGCRELKKKCADMGN 157 (943)
Q Consensus 80 ~~~~~~~~l~~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~n~~~~~~p~~~~~ 157 (943)
.+|.++. +.+++|+|++|.++.+ +..|.++++|++|+|++|.|+.++ ..|.++++|++|+|++|.+....+..|..
T Consensus 57 ~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 134 (440)
T 3zyj_A 57 EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVY 134 (440)
T ss_dssp SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCS
T ss_pred cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhc
Confidence 4454443 4556666666666655 345566666666666666666553 45566666666666665433222234666
Q ss_pred cccCceEEcCCCCCCccccccccccccccccCceEeccCCCCCcccccCcccccCceeecccccccCccchhhcccCCCC
Q 002284 158 LIKLHHLNNSNTDSLEEMPLGIGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGKK 237 (943)
Q Consensus 158 L~~L~~L~l~~n~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~ 237 (943)
+++|++|++++|. +..+|.. .+..++
T Consensus 135 l~~L~~L~L~~N~-i~~~~~~-----------------------------------------------------~~~~l~ 160 (440)
T 3zyj_A 135 LSKLKELWLRNNP-IESIPSY-----------------------------------------------------AFNRIP 160 (440)
T ss_dssp CSSCCEEECCSCC-CCEECTT-----------------------------------------------------TTTTCT
T ss_pred cccCceeeCCCCc-ccccCHH-----------------------------------------------------HhhhCc
Confidence 6666666666665 3333321 133344
Q ss_pred CCCeEEEEeecCCCCCCchhhhhHHhhhccCCCCCCcceEEEEeeCCCCCCcccCCCCcCCeeEEEEeCCCCCCCCCCCC
Q 002284 238 NLKVLMLEWTRSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSMPSVG 317 (943)
Q Consensus 238 ~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~~~~~~~~~~ 317 (943)
+|+.|+++.+..... .....+.. +++|++|++++|.+. .+|.+.
T Consensus 161 ~L~~L~l~~~~~l~~----------i~~~~~~~-------------------------l~~L~~L~L~~n~l~-~~~~~~ 204 (440)
T 3zyj_A 161 SLRRLDLGELKRLSY----------ISEGAFEG-------------------------LSNLRYLNLAMCNLR-EIPNLT 204 (440)
T ss_dssp TCCEEECCCCTTCCE----------ECTTTTTT-------------------------CSSCCEEECTTSCCS-SCCCCT
T ss_pred ccCEeCCCCCCCcce----------eCcchhhc-------------------------ccccCeecCCCCcCc-cccccC
Confidence 555555544221100 00012333 455555555555553 334455
Q ss_pred CCCCCCeeEEecCcCceeeCccccCCCCCCCCCCcceeecccccccccccccccCCccccCCcccEEeeccCCCccCCCC
Q 002284 318 QLPSLKHLEVRGMSRVKRLGSEFYGNDSPIPFPCLETLHFAEMQEWEEWIPHGCSQEIEGFPKLRELHIVRCSKLQGTLP 397 (943)
Q Consensus 318 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p 397 (943)
.+++|++|++++|......+..|.+ +++|+.|++++|. +... .+..+..+++|++|++++ |+++ .+|
T Consensus 205 ~l~~L~~L~Ls~N~l~~~~~~~~~~------l~~L~~L~L~~n~-l~~~----~~~~~~~l~~L~~L~L~~-N~l~-~~~ 271 (440)
T 3zyj_A 205 PLIKLDELDLSGNHLSAIRPGSFQG------LMHLQKLWMIQSQ-IQVI----ERNAFDNLQSLVEINLAH-NNLT-LLP 271 (440)
T ss_dssp TCSSCCEEECTTSCCCEECTTTTTT------CTTCCEEECTTCC-CCEE----CTTSSTTCTTCCEEECTT-SCCC-CCC
T ss_pred CCcccCEEECCCCccCccChhhhcc------CccCCEEECCCCc-eeEE----ChhhhcCCCCCCEEECCC-CCCC-ccC
Confidence 5555555555555433322222222 5555555555553 2221 234566778888888888 6777 555
Q ss_pred CCCCCccEEEEeccCCCCccceEEeccCCc
Q 002284 398 THLTLLDILVVQNFTSLPALCKLRIDRCKK 427 (943)
Q Consensus 398 ~~l~~L~~L~~~~~~~l~~L~~L~l~~~~~ 427 (943)
... +..+++|+.|++++|+.
T Consensus 272 ~~~----------~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 272 HDL----------FTPLHHLERIHLHHNPW 291 (440)
T ss_dssp TTT----------TSSCTTCCEEECCSSCE
T ss_pred hhH----------hccccCCCEEEcCCCCc
Confidence 443 55677777787777763
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.81 E-value=1e-19 Score=193.48 Aligned_cols=88 Identities=18% Similarity=0.180 Sum_probs=52.9
Q ss_pred ccchhhhccCcccEEEecCccccccCcc-ccCCCCCceeecCCCccccc---chhhhhccccceeecCCCcccccccHHH
Q 002284 80 SILPRLLKLQRLRVFSLRGYLISEVPDS-IGDLSYLRYLNLSGTQIRTL---PESVNKLYNLHTLLLEGCRELKKKCADM 155 (943)
Q Consensus 80 ~~~~~~~~l~~L~~L~L~~n~i~~lp~~-~~~l~~L~~L~Ls~n~i~~l---p~~i~~L~~L~~L~L~~n~~~~~~p~~~ 155 (943)
.+|.++. ++|++|++++|.++.+|.. |.++++|++|+|++|.++.+ |..+..+++|++|++++|. +..+|..+
T Consensus 21 ~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~ 97 (306)
T 2z66_A 21 SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNF 97 (306)
T ss_dssp SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEE
T ss_pred cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhc
Confidence 4444433 4566666666666666543 46666666666666666544 4555566666666666664 34455556
Q ss_pred hccccCceEEcCCCC
Q 002284 156 GNLIKLHHLNNSNTD 170 (943)
Q Consensus 156 ~~L~~L~~L~l~~n~ 170 (943)
..+++|++|++++|.
T Consensus 98 ~~l~~L~~L~l~~n~ 112 (306)
T 2z66_A 98 LGLEQLEHLDFQHSN 112 (306)
T ss_dssp ETCTTCCEEECTTSE
T ss_pred CCCCCCCEEECCCCc
Confidence 666666666666665
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.81 E-value=1.5e-20 Score=200.34 Aligned_cols=150 Identities=12% Similarity=0.073 Sum_probs=88.6
Q ss_pred cccEEEeecCCCchhhHhhhcccccccEEEeeccCCcccccccc-cCCCCccEEeccCCCCCcccCcCCccccccceeee
Q 002284 679 ALKFLSIWHCSKLESIVERLDNKISLEVIEIVSCENLKMLPHGL-HKLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVI 757 (943)
Q Consensus 679 ~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~-~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l 757 (943)
+|++|++++|......+..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|. ++.+|... .+++|++|++
T Consensus 121 ~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~-~l~~L~~L~L 198 (317)
T 3o53_A 121 GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQV-VFAKLKTLDL 198 (317)
T ss_dssp SCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEECCC-CCTTCCEEEC
T ss_pred CCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Cccccccc-ccccCCEEEC
Confidence 45555555554444334455566666666676666666555544 356777777777773 44444322 3567777777
Q ss_pred ccccCCccCCCcCCCCCCCCceeecCCCCCccccCCCCCCCCcceEEecCCcchhccccccCCCCCCCccEEEecC
Q 002284 758 YGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFTEDGLFPTNLHSLEIDGMKIWKSLMQLGGFHRYTSLRRLAISG 833 (943)
Q Consensus 758 ~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 833 (943)
++|.. ..+|..+..+++|++|++++|. ++.+|.....+++|+.|++++|+......+ ..+..+++|+.|++++
T Consensus 199 s~N~l-~~l~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~-~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 199 SSNKL-AFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFHCGTLR-DFFSKNQRVQTVAKQT 271 (317)
T ss_dssp CSSCC-CEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCCBHHHHH-HHHHTCHHHHHHHHHH
T ss_pred CCCcC-CcchhhhcccCcccEEECcCCc-ccchhhHhhcCCCCCEEEccCCCccCcCHH-HHHhccccceEEECCC
Confidence 77653 3455556667777777777764 445666555566777777777766522211 1345566666666665
No 59
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.81 E-value=2.2e-21 Score=227.83 Aligned_cols=154 Identities=11% Similarity=-0.011 Sum_probs=82.2
Q ss_pred ccccEEEeecCCCchhhHhhh-cccccccEEEee-----ccCCccccc------ccccCCCCccEEeccCCCCCcccCcC
Q 002284 678 QALKFLSIWHCSKLESIVERL-DNKISLEVIEIV-----SCENLKMLP------HGLHKLWHLQEIDIQDCENLVSFPEG 745 (943)
Q Consensus 678 ~~L~~L~l~~~~~l~~~~~~~-~~l~~L~~L~l~-----~~~~~~~~p------~~~~~l~~L~~L~l~~~~~l~~~p~~ 745 (943)
++|+.|.+..+.........+ ..+++|+.|+++ +|..++..| ..+..+++|++|+++++ .....+..
T Consensus 372 ~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~-l~~~~~~~ 450 (594)
T 2p1m_B 372 PKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGL-LTDKVFEY 450 (594)
T ss_dssp TTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSS-CCHHHHHH
T ss_pred hhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCc-ccHHHHHH
Confidence 356666554444333333333 346677777777 334444222 22456677777777662 22222222
Q ss_pred Ccc-ccccceeeeccccCCccCCCcC-CCCCCCCceeecCCCCCccccC-CCCCCCCcceEEecCCcchhccccccCCCC
Q 002284 746 GLL-SAKLKRLVIYGCKKLEALPEGM-HNLSSLQYLTIGGVPSLLCFTE-DGLFPTNLHSLEIDGMKIWKSLMQLGGFHR 822 (943)
Q Consensus 746 ~~~-l~~L~~L~l~~~~~l~~~p~~~-~~l~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~ 822 (943)
+.. +++|+.|++++|...+..+..+ ..+++|++|++++|+....... ....+++|++|++++|+....... .....
T Consensus 451 l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~l~~~ 529 (594)
T 2p1m_B 451 IGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACK-LLGQK 529 (594)
T ss_dssp HHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHH-HHHHH
T ss_pred HHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHH-HHHHh
Confidence 222 5677777777776543333333 4577788888887775221111 122357788888888876332221 11245
Q ss_pred CCCccEEEecC
Q 002284 823 YTSLRRLAISG 833 (943)
Q Consensus 823 l~~L~~L~l~~ 833 (943)
+|+|+...+..
T Consensus 530 lp~l~i~~~~~ 540 (594)
T 2p1m_B 530 MPKLNVEVIDE 540 (594)
T ss_dssp CTTEEEEEECS
T ss_pred CCCCEEEEecC
Confidence 67776666654
No 60
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.81 E-value=6.3e-19 Score=191.39 Aligned_cols=149 Identities=20% Similarity=0.141 Sum_probs=88.8
Q ss_pred hhccccccccCCCccccCCCCceeeeeEeecCccccccchhhhhhcccccCeEEeecCCCcccchhhhhhhcCccceece
Q 002284 441 YKDISNQMFLGGPLKLQLPKLDELDISIIIDGLSYIWQNETQLLQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEH 520 (943)
Q Consensus 441 ~l~ls~n~l~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~ 520 (943)
..+.+++.++..|.. ..++|++|+++ .+.+..++...+..+++|+.|++++|. ++.+.... |..+++|++
T Consensus 35 ~c~~~~~~l~~iP~~-~~~~L~~L~l~-----~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~---~~~l~~L~~ 104 (353)
T 2z80_A 35 ICKGSSGSLNSIPSG-LTEAVKSLDLS-----NNRITYISNSDLQRCVNLQALVLTSNG-INTIEEDS---FSSLGSLEH 104 (353)
T ss_dssp EEECCSTTCSSCCTT-CCTTCCEEECT-----TSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTT---TTTCTTCCE
T ss_pred EeeCCCCCccccccc-ccccCcEEECC-----CCcCcccCHHHhccCCCCCEEECCCCc-cCccCHhh---cCCCCCCCE
Confidence 356666777666542 23567777777 334455555566777777777777774 55554433 667777777
Q ss_pred EEEecCCCcCccchhccCCCCcCeeeccCCCCCcccCC---CCCCCCccEEEEecCCCCCcCccccccCCCCCccEEEee
Q 002284 521 LELINCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPE---AVLPSQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIR 597 (943)
Q Consensus 521 L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~l~~~~~---~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~ 597 (943)
|++++|.+.+..+..+..+++|++|++++|+ ++.++. ...+++|++|++++|..++.++... +.++++|++|+++
T Consensus 105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~l~~L~~L~l~ 182 (353)
T 2z80_A 105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKD-FAGLTFLEELEID 182 (353)
T ss_dssp EECCSSCCSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTT-TTTCCEEEEEEEE
T ss_pred EECCCCcCCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHH-ccCCCCCCEEECC
Confidence 7777776554444446777777777777775 334444 1225666666666664444443221 3356666666666
Q ss_pred cCCC
Q 002284 598 HCHL 601 (943)
Q Consensus 598 ~n~~ 601 (943)
+|.+
T Consensus 183 ~n~l 186 (353)
T 2z80_A 183 ASDL 186 (353)
T ss_dssp ETTC
T ss_pred CCCc
Confidence 6654
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.80 E-value=1.9e-20 Score=199.69 Aligned_cols=254 Identities=13% Similarity=0.063 Sum_probs=142.2
Q ss_pred ccchhhhhhcccccCeEEeecCCCcccchhhhhhhcCccceeceEEEecCCCcCccchhccCCCCcCeeeccCCCCCccc
Q 002284 477 WQNETQLLQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSF 556 (943)
Q Consensus 477 ~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~l~~~ 556 (943)
.......+..+++|++|++++|. ++.++... +..+++|++|++++|.+.+..+ +..+++|++|++++|. ++.+
T Consensus 23 ~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~---~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~-l~~l 95 (317)
T 3o53_A 23 KQALASLRQSAWNVKELDLSGNP-LSQISAAD---LAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY-VQEL 95 (317)
T ss_dssp HHHHHHHHTTGGGCSEEECTTSC-CCCCCHHH---HTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSE-EEEE
T ss_pred hhhHHHHhccCCCCCEEECcCCc-cCcCCHHH---hhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCc-cccc
Confidence 33344444555566666666663 44443322 5666666666666665543333 5566666666666664 2222
Q ss_pred CCCCCCCCccEEEEecCCCCCcCccccccCCCCCccEEEeecCCCcccccCc-CCCCCCceEEeccCcCccccccccCcc
Q 002284 557 PEAVLPSQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLTYIAGV-QLPPSLKQLEIYNCDNLRTLTAEEGIH 635 (943)
Q Consensus 557 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~~L~~L~l~~~~~L~~l~~~~~~~ 635 (943)
+. .++|++|++++|... .++.. .+++|++|++++|.+....+.. ...
T Consensus 96 ~~---~~~L~~L~l~~n~l~-~~~~~----~~~~L~~L~l~~N~l~~~~~~~~~~l------------------------ 143 (317)
T 3o53_A 96 LV---GPSIETLHAANNNIS-RVSCS----RGQGKKNIYLANNKITMLRDLDEGCR------------------------ 143 (317)
T ss_dssp EE---CTTCCEEECCSSCCS-EEEEC----CCSSCEEEECCSSCCCSGGGBCTGGG------------------------
T ss_pred cC---CCCcCEEECCCCccC-CcCcc----ccCCCCEEECCCCCCCCccchhhhcc------------------------
Confidence 21 245555555555522 22211 2444555555555432211100 111
Q ss_pred cccccCCccceeeeecCCCcccccchhhHHHHhhhhhcCCCcccccEEEeecCCCchhhHhhh-cccccccEEEeeccCC
Q 002284 636 SSRRHTSLLECLEIHSCPSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKLESIVERL-DNKISLEVIEIVSCEN 714 (943)
Q Consensus 636 ~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~~~~l~~~~~~~-~~l~~L~~L~l~~~~~ 714 (943)
++|+.|++++|...+..+..+ ..+++|++|++++|.+
T Consensus 144 ------------------------------------------~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 181 (317)
T 3o53_A 144 ------------------------------------------SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (317)
T ss_dssp ------------------------------------------SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ------------------------------------------CCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcC
Confidence 345556666554444334333 3567777777777765
Q ss_pred cccccccccCCCCccEEeccCCCCCcccCcCCccccccceeeeccccCCccCCCcCCCCCCCCceeecCCCCC-ccccCC
Q 002284 715 LKMLPHGLHKLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVIYGCKKLEALPEGMHNLSSLQYLTIGGVPSL-LCFTED 793 (943)
Q Consensus 715 ~~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l-~~~~~~ 793 (943)
.+. |. ...+++|++|++++| .++.+|..+..+++|+.|++++|. +..+|..+..+++|++|++++|+.. ..++..
T Consensus 182 ~~~-~~-~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~ 257 (317)
T 3o53_A 182 YDV-KG-QVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFHCGTLRDF 257 (317)
T ss_dssp CEE-EC-CCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCCBHHHHHHH
T ss_pred ccc-cc-ccccccCCEEECCCC-cCCcchhhhcccCcccEEECcCCc-ccchhhHhhcCCCCCEEEccCCCccCcCHHHH
Confidence 544 32 234777888888777 455566666677778888887776 4456777777778888888877765 344444
Q ss_pred CCCCCCcceEEecCCcchhccc
Q 002284 794 GLFPTNLHSLEIDGMKIWKSLM 815 (943)
Q Consensus 794 ~~~~~~L~~L~l~~c~~l~~~~ 815 (943)
...+++|+.|++++|+.+....
T Consensus 258 ~~~~~~L~~l~l~~~~~l~~~~ 279 (317)
T 3o53_A 258 FSKNQRVQTVAKQTVKKLTGQN 279 (317)
T ss_dssp HHTCHHHHHHHHHHHHHHHSSS
T ss_pred HhccccceEEECCCchhccCCc
Confidence 4445777777777776665543
No 62
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.79 E-value=8.2e-18 Score=193.33 Aligned_cols=255 Identities=24% Similarity=0.298 Sum_probs=160.5
Q ss_pred cccCeEEeecCCCcccchhhhhhhcCccceeceEEEecCCCcCccchhccCCCCcCeeeccCCCCCcccCCCCCCCCccE
Q 002284 488 ATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPEAVLPSQLRV 567 (943)
Q Consensus 488 ~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~l~~~~~~~~~~~L~~ 567 (943)
.+++.|++++|. ++.++.. +. ++|++|++++|.+ ..+|. .+++|++|++++|. ++.+|. .+++|++
T Consensus 40 ~~l~~L~ls~n~-L~~lp~~----l~--~~L~~L~L~~N~l-~~lp~---~l~~L~~L~Ls~N~-l~~lp~--~l~~L~~ 105 (622)
T 3g06_A 40 NGNAVLNVGESG-LTTLPDC----LP--AHITTLVIPDNNL-TSLPA---LPPELRTLEVSGNQ-LTSLPV--LPPGLLE 105 (622)
T ss_dssp HCCCEEECCSSC-CSCCCSC----CC--TTCSEEEECSCCC-SCCCC---CCTTCCEEEECSCC-CSCCCC--CCTTCCE
T ss_pred CCCcEEEecCCC-cCccChh----hC--CCCcEEEecCCCC-CCCCC---cCCCCCEEEcCCCc-CCcCCC--CCCCCCE
Confidence 346777777664 5555543 22 5677777777744 34554 45677777777775 445554 4566777
Q ss_pred EEEecCCCCCcCccccccCCCCCccEEEeecCCCcccccCcCCCCCCceEEeccCcCccccccccCcccccccCCcccee
Q 002284 568 ISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLTYIAGVQLPPSLKQLEIYNCDNLRTLTAEEGIHSSRRHTSLLECL 647 (943)
Q Consensus 568 L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~L~~L 647 (943)
|++++|. +..+|. .+++|++|++++|.+. .+|. .+++|+.|++++| .++.++
T Consensus 106 L~Ls~N~-l~~l~~-----~l~~L~~L~L~~N~l~-~lp~--~l~~L~~L~Ls~N-~l~~l~------------------ 157 (622)
T 3g06_A 106 LSIFSNP-LTHLPA-----LPSGLCKLWIFGNQLT-SLPV--LPPGLQELSVSDN-QLASLP------------------ 157 (622)
T ss_dssp EEECSCC-CCCCCC-----CCTTCCEEECCSSCCS-CCCC--CCTTCCEEECCSS-CCSCCC------------------
T ss_pred EECcCCc-CCCCCC-----CCCCcCEEECCCCCCC-cCCC--CCCCCCEEECcCC-cCCCcC------------------
Confidence 7776666 333443 2566677777666533 2332 2355666666665 333322
Q ss_pred eeecCCCcccccchhhHHHHhhhhhcCCCcccccEEEeecCCCchhhHhhhcccccccEEEeeccCCcccccccccCCCC
Q 002284 648 EIHSCPSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKLESIVERLDNKISLEVIEIVSCENLKMLPHGLHKLWH 727 (943)
Q Consensus 648 ~i~~c~~l~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~ 727 (943)
..+++|+.|++++|. ++.+| ..+++|+.|++++|.+.+ +|. .+++
T Consensus 158 ---------------------------~~~~~L~~L~L~~N~-l~~l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~ 202 (622)
T 3g06_A 158 ---------------------------ALPSELCKLWAYNNQ-LTSLP---MLPSGLQELSVSDNQLAS-LPT---LPSE 202 (622)
T ss_dssp ---------------------------CCCTTCCEEECCSSC-CSCCC---CCCTTCCEEECCSSCCSC-CCC---CCTT
T ss_pred ---------------------------CccCCCCEEECCCCC-CCCCc---ccCCCCcEEECCCCCCCC-CCC---ccch
Confidence 123567777777754 33344 456778888888877654 443 2468
Q ss_pred ccEEeccCCCCCcccCcCCccccccceeeeccccCCccCCCcCCCCCCCCceeecCCCCCccccCCCCCCCCcceEEecC
Q 002284 728 LQEIDIQDCENLVSFPEGGLLSAKLKRLVIYGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFTEDGLFPTNLHSLEIDG 807 (943)
Q Consensus 728 L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~ 807 (943)
|+.|++++| .+..+|.. +++|+.|++++|. +..+| ..+++|++|++++|. +..+|. .+++|+.|++++
T Consensus 203 L~~L~L~~N-~l~~l~~~---~~~L~~L~Ls~N~-L~~lp---~~l~~L~~L~Ls~N~-L~~lp~---~~~~L~~L~Ls~ 270 (622)
T 3g06_A 203 LYKLWAYNN-RLTSLPAL---PSGLKELIVSGNR-LTSLP---VLPSELKELMVSGNR-LTSLPM---LPSGLLSLSVYR 270 (622)
T ss_dssp CCEEECCSS-CCSSCCCC---CTTCCEEECCSSC-CSCCC---CCCTTCCEEECCSSC-CSCCCC---CCTTCCEEECCS
T ss_pred hhEEECcCC-cccccCCC---CCCCCEEEccCCc-cCcCC---CCCCcCcEEECCCCC-CCcCCc---ccccCcEEeCCC
Confidence 888888887 45566642 4678888888876 44566 456788888888874 566766 367888888888
Q ss_pred CcchhccccccCCCCCCCccEEEecCC
Q 002284 808 MKIWKSLMQLGGFHRYTSLRRLAISGC 834 (943)
Q Consensus 808 c~~l~~~~~~~~~~~l~~L~~L~l~~c 834 (943)
|... .++. .+..+++|+.|+++++
T Consensus 271 N~L~-~lp~--~l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 271 NQLT-RLPE--SLIHLSSETTVNLEGN 294 (622)
T ss_dssp SCCC-SCCG--GGGGSCTTCEEECCSC
T ss_pred CCCC-cCCH--HHhhccccCEEEecCC
Confidence 8655 3332 4777888888888883
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.78 E-value=2.3e-18 Score=193.60 Aligned_cols=239 Identities=20% Similarity=0.212 Sum_probs=146.9
Q ss_pred ceEEEEeeCCCCCCcccCCCCcCCeeEEEEeCCCCCCCCC-CCCCCCCCCeeEEecCcCceeeCccccCCCCCCCCCCcc
Q 002284 275 EQFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSMP-SVGQLPSLKHLEVRGMSRVKRLGSEFYGNDSPIPFPCLE 353 (943)
Q Consensus 275 ~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~ 353 (943)
..++..+.....+|..+ .+++++|+|++|.+.+..+ .|..+++|++|++++|......+..|.+ +++|+
T Consensus 57 ~~v~c~~~~l~~iP~~~----~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~------l~~L~ 126 (452)
T 3zyi_A 57 SKVVCTRRGLSEVPQGI----PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNG------LASLN 126 (452)
T ss_dssp CEEECCSSCCSSCCSCC----CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT------CTTCC
T ss_pred cEEEECCCCcCccCCCC----CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccC------cccCC
Confidence 44555555556677644 3678888888888877666 7888888888888888754443333333 78888
Q ss_pred eeecccccccccccccccCCccccCCcccEEeeccCCCccCCCCCCCCCccEEEEeccCCCCccceEEeccCCceeee--
Q 002284 354 TLHFAEMQEWEEWIPHGCSQEIEGFPKLRELHIVRCSKLQGTLPTHLTLLDILVVQNFTSLPALCKLRIDRCKKVVWR-- 431 (943)
Q Consensus 354 ~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~~~~~~~l~~L~~L~l~~~~~~~~~-- 431 (943)
+|++++|. +.. ..+..+..+++|++|++++ |+++ .+|... +..+++|+.|++++|..+...
T Consensus 127 ~L~L~~n~-l~~----~~~~~~~~l~~L~~L~L~~-N~l~-~~~~~~----------~~~l~~L~~L~l~~~~~l~~i~~ 189 (452)
T 3zyi_A 127 TLELFDNW-LTV----IPSGAFEYLSKLRELWLRN-NPIE-SIPSYA----------FNRVPSLMRLDLGELKKLEYISE 189 (452)
T ss_dssp EEECCSSC-CSB----CCTTTSSSCTTCCEEECCS-CCCC-EECTTT----------TTTCTTCCEEECCCCTTCCEECT
T ss_pred EEECCCCc-CCc----cChhhhcccCCCCEEECCC-CCcc-eeCHhH----------HhcCCcccEEeCCCCCCccccCh
Confidence 88888874 222 1244567788888888888 6776 555433 567888888888886654422
Q ss_pred -ccCcccchhhhccccccccCCCccccCCCCceeeeeEeecCccccccchhhhhhcccccCeEEeecCCCcccchhhhhh
Q 002284 432 -STTDCESQLYKDISNQMFLGGPLKLQLPKLDELDISIIIDGLSYIWQNETQLLQDIATLKRLKIERCPKLQFLEEEDQW 510 (943)
Q Consensus 432 -~~~~~~~l~~l~ls~n~l~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~ 510 (943)
.+..+++|++|++++|.+++.+....+++|+.|+++ +|. ++.+....
T Consensus 190 ~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls-----------------------------~N~-l~~~~~~~-- 237 (452)
T 3zyi_A 190 GAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMS-----------------------------GNH-FPEIRPGS-- 237 (452)
T ss_dssp TTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECT-----------------------------TSC-CSEECGGG--
T ss_pred hhccCCCCCCEEECCCCcccccccccccccccEEECc-----------------------------CCc-CcccCccc--
Confidence 345566677777777776665554445555555554 443 33332222
Q ss_pred hcCccceeceEEEecCCCcCccchhccCCCCcCeeeccCCCCCcccCCCCC--CCCccEEEEecCC
Q 002284 511 QFGLSFRLEHLELINCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPEAVL--PSQLRVISIWDSG 574 (943)
Q Consensus 511 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~l~~~~~~~~--~~~L~~L~l~~~~ 574 (943)
|..+++|+.|++++|.+.+..+..+..+++|++|+|++|. +..++...+ +++|+.|++++|+
T Consensus 238 -~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 238 -FHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN-LSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp -GTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTSSTTCTTCCEEECCSSC
T ss_pred -ccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc-CCccChHHhccccCCCEEEccCCC
Confidence 5555555555555555554445555556666666666654 333433222 4556666666555
No 64
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.78 E-value=2.2e-18 Score=183.16 Aligned_cols=133 Identities=18% Similarity=0.117 Sum_probs=75.4
Q ss_pred cccEEEeecCCCchhhHhhhcccccccEEEeeccCCcc-cccccccCCCCccEEeccCCCCCcccCcCCccccccceeee
Q 002284 679 ALKFLSIWHCSKLESIVERLDNKISLEVIEIVSCENLK-MLPHGLHKLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVI 757 (943)
Q Consensus 679 ~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~-~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l 757 (943)
+|++|++++|......+..+..+++|++|++++|.+.+ .+|..+..+++|++|++++|...+..|..+..+++|++|++
T Consensus 127 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 206 (306)
T 2z66_A 127 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 206 (306)
T ss_dssp TCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEEC
Confidence 45555555554444444455566666666666666554 45666666666666666666444433445555666666666
Q ss_pred ccccCCccCCCcCCCCCCCCceeecCCCCCccccCCCCCC-CCcceEEecCCcch
Q 002284 758 YGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFTEDGLFP-TNLHSLEIDGMKIW 811 (943)
Q Consensus 758 ~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~-~~L~~L~l~~c~~l 811 (943)
++|...+..+..+..+++|++|++++|......+.....+ ++|++|++++|+..
T Consensus 207 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~ 261 (306)
T 2z66_A 207 SHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261 (306)
T ss_dssp TTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEE
T ss_pred CCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCee
Confidence 6666444444455666666666666665444444443333 35666666666543
No 65
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.78 E-value=2.2e-18 Score=193.05 Aligned_cols=240 Identities=19% Similarity=0.231 Sum_probs=149.9
Q ss_pred cceEEEEeeCCCCCCcccCCCCcCCeeEEEEeCCCCCCCCC-CCCCCCCCCeeEEecCcCceeeCccccCCCCCCCCCCc
Q 002284 274 LEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSMP-SVGQLPSLKHLEVRGMSRVKRLGSEFYGNDSPIPFPCL 352 (943)
Q Consensus 274 L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L 352 (943)
...++..+.....+|..+ .++++.|+|++|.+.+..+ .|..+++|++|++++|......+..|.+ +++|
T Consensus 45 ~~~v~c~~~~l~~iP~~~----~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~------l~~L 114 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGI----STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNG------LANL 114 (440)
T ss_dssp SCEEECCSCCCSSCCSCC----CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTT------CSSC
T ss_pred CCEEEeCCCCcCcCCCCC----CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccC------CccC
Confidence 345555566667777755 4678999999999877666 7888999999999998744433333433 8889
Q ss_pred ceeecccccccccccccccCCccccCCcccEEeeccCCCccCCCCCCCCCccEEEEeccCCCCccceEEeccCCceee--
Q 002284 353 ETLHFAEMQEWEEWIPHGCSQEIEGFPKLRELHIVRCSKLQGTLPTHLTLLDILVVQNFTSLPALCKLRIDRCKKVVW-- 430 (943)
Q Consensus 353 ~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~~~~~~~l~~L~~L~l~~~~~~~~-- 430 (943)
++|++++|. +... .+..+..+++|++|++++ |+++ .+|... +..+++|++|++++|..+..
T Consensus 115 ~~L~L~~n~-l~~~----~~~~~~~l~~L~~L~L~~-N~i~-~~~~~~----------~~~l~~L~~L~l~~~~~l~~i~ 177 (440)
T 3zyj_A 115 NTLELFDNR-LTTI----PNGAFVYLSKLKELWLRN-NPIE-SIPSYA----------FNRIPSLRRLDLGELKRLSYIS 177 (440)
T ss_dssp CEEECCSSC-CSSC----CTTTSCSCSSCCEEECCS-CCCC-EECTTT----------TTTCTTCCEEECCCCTTCCEEC
T ss_pred CEEECCCCc-CCee----CHhHhhccccCceeeCCC-Cccc-ccCHHH----------hhhCcccCEeCCCCCCCcceeC
Confidence 999998874 3322 244577889999999998 6776 555433 56788888888888665432
Q ss_pred -eccCcccchhhhccccccccCCCccccCCCCceeeeeEeecCccccccchhhhhhcccccCeEEeecCCCcccchhhhh
Q 002284 431 -RSTTDCESQLYKDISNQMFLGGPLKLQLPKLDELDISIIIDGLSYIWQNETQLLQDIATLKRLKIERCPKLQFLEEEDQ 509 (943)
Q Consensus 431 -~~~~~~~~l~~l~ls~n~l~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~ 509 (943)
..+..+++|++|++++|.++..+....+++|+.|+++ +|. ++.+....
T Consensus 178 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls-----------------------------~N~-l~~~~~~~- 226 (440)
T 3zyj_A 178 EGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLS-----------------------------GNH-LSAIRPGS- 226 (440)
T ss_dssp TTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECT-----------------------------TSC-CCEECTTT-
T ss_pred cchhhcccccCeecCCCCcCccccccCCCcccCEEECC-----------------------------CCc-cCccChhh-
Confidence 2345566777777777777666554455555555554 442 33332222
Q ss_pred hhcCccceeceEEEecCCCcCccchhccCCCCcCeeeccCCCCCcccCCCCC--CCCccEEEEecCC
Q 002284 510 WQFGLSFRLEHLELINCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPEAVL--PSQLRVISIWDSG 574 (943)
Q Consensus 510 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~l~~~~~~~~--~~~L~~L~l~~~~ 574 (943)
|..+++|+.|++++|.+.+..+..|..+++|++|+|++|. ++.++...+ +++|+.|++++|+
T Consensus 227 --~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 227 --FQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN-LTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp --TTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSC-CCCCCTTTTSSCTTCCEEECCSSC
T ss_pred --hccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCC-CCccChhHhccccCCCEEEcCCCC
Confidence 4555555555555555444444455555555555555554 333333222 4555555555554
No 66
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.77 E-value=8.2e-19 Score=184.21 Aligned_cols=88 Identities=15% Similarity=0.153 Sum_probs=42.3
Q ss_pred hcccccccEEEeeccCCcccccccccCCCCccEEeccCCCCCcccCcCCccccccceeeeccccCCccCCCcCCCCCCCC
Q 002284 698 LDNKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVIYGCKKLEALPEGMHNLSSLQ 777 (943)
Q Consensus 698 ~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~ 777 (943)
+..+++|++|++++|.+.+..+..+..+++|++|++++|...+..|..+..+++|+.|++++|...+..+..+..+++|+
T Consensus 149 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 228 (285)
T 1ozn_A 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQ 228 (285)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCC
T ss_pred hccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccC
Confidence 34444444444444444433333445555555555555543333344444455555555555543332223345555555
Q ss_pred ceeecCCC
Q 002284 778 YLTIGGVP 785 (943)
Q Consensus 778 ~L~l~~~~ 785 (943)
+|++++|+
T Consensus 229 ~L~l~~N~ 236 (285)
T 1ozn_A 229 YLRLNDNP 236 (285)
T ss_dssp EEECCSSC
T ss_pred EEeccCCC
Confidence 55555554
No 67
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.77 E-value=8.5e-19 Score=184.11 Aligned_cols=219 Identities=18% Similarity=0.168 Sum_probs=115.4
Q ss_pred eEEEEeeCCCCCCcccCCCCcCCeeEEEEeCCCCCCCCC-CCCCCCCCCeeEEecCcCceeeCccccCCCCCCCCCCcce
Q 002284 276 QFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSMP-SVGQLPSLKHLEVRGMSRVKRLGSEFYGNDSPIPFPCLET 354 (943)
Q Consensus 276 ~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~ 354 (943)
.++.++.....+|..+ .++|++|++++|.+.+..+ .++.+++|++|++++|......+..+.+ +++|++
T Consensus 15 ~~~c~~~~l~~ip~~~----~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~------l~~L~~ 84 (285)
T 1ozn_A 15 TTSCPQQGLQAVPVGI----PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTG------LALLEQ 84 (285)
T ss_dssp EEECCSSCCSSCCTTC----CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT------CTTCCE
T ss_pred EEEcCcCCcccCCcCC----CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCC------ccCCCE
Confidence 3444455555666533 4678888888888876665 6788888888888888643332333322 667777
Q ss_pred eecccccccccccccccCCccccCCcccEEeeccCCCccCCCCCCCCCccEEEEeccCCCCccceEEeccCCceeeeccC
Q 002284 355 LHFAEMQEWEEWIPHGCSQEIEGFPKLRELHIVRCSKLQGTLPTHLTLLDILVVQNFTSLPALCKLRIDRCKKVVWRSTT 434 (943)
Q Consensus 355 L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 434 (943)
|+++++..+... .+..+..+++|++|++++ +++++..|.. +..+++|++|++++|.
T Consensus 85 L~l~~n~~l~~~----~~~~~~~l~~L~~L~l~~-n~l~~~~~~~-----------~~~l~~L~~L~l~~n~-------- 140 (285)
T 1ozn_A 85 LDLSDNAQLRSV----DPATFHGLGRLHTLHLDR-CGLQELGPGL-----------FRGLAALQYLYLQDNA-------- 140 (285)
T ss_dssp EECCSCTTCCCC----CTTTTTTCTTCCEEECTT-SCCCCCCTTT-----------TTTCTTCCEEECCSSC--------
T ss_pred EeCCCCCCcccc----CHHHhcCCcCCCEEECCC-CcCCEECHhH-----------hhCCcCCCEEECCCCc--------
Confidence 777766433332 134556677777777777 4665332322 3344555555554443
Q ss_pred cccchhhhccccccccCCCc--cccCCCCceeeeeEeecCccccccchhhhhhcccccCeEEeecCCCcccchhhhhhhc
Q 002284 435 DCESQLYKDISNQMFLGGPL--KLQLPKLDELDISIIIDGLSYIWQNETQLLQDIATLKRLKIERCPKLQFLEEEDQWQF 512 (943)
Q Consensus 435 ~~~~l~~l~ls~n~l~~~~~--~~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~ 512 (943)
+++.+. +..+++|+.|+++ .+.+..++...+..+++|+.|++++|. ++.+.... +
T Consensus 141 --------------l~~~~~~~~~~l~~L~~L~l~-----~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~---~ 197 (285)
T 1ozn_A 141 --------------LQALPDDTFRDLGNLTHLFLH-----GNRISSVPERAFRGLHSLDRLLLHQNR-VAHVHPHA---F 197 (285)
T ss_dssp --------------CCCCCTTTTTTCTTCCEEECC-----SSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTT---T
T ss_pred --------------ccccCHhHhccCCCccEEECC-----CCcccccCHHHhcCccccCEEECCCCc-ccccCHhH---c
Confidence 332221 2234444444444 122333333344445555555555553 33332221 4
Q ss_pred CccceeceEEEecCCCcCccchhccCCCCcCeeeccCCC
Q 002284 513 GLSFRLEHLELINCQDLEKLPKSLLSLSSLTEMRIHNCS 551 (943)
Q Consensus 513 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~ 551 (943)
..+++|+.|++++|.+.+..+..+..+++|++|++++|+
T Consensus 198 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 198 RDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp TTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred cCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 455555555555554444333445555555555555554
No 68
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.76 E-value=6.6e-20 Score=215.15 Aligned_cols=379 Identities=14% Similarity=0.063 Sum_probs=184.4
Q ss_pred hhcccccCeEEeecCCCcccchhhhhhhcC-ccceeceEEEecCCCcCc--cchhccCCCCcCeeeccCCCCCcc----c
Q 002284 484 LQDIATLKRLKIERCPKLQFLEEEDQWQFG-LSFRLEHLELINCQDLEK--LPKSLLSLSSLTEMRIHNCSSLVS----F 556 (943)
Q Consensus 484 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~-~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~L~~n~~l~~----~ 556 (943)
...+++|++|++++|. ++...... +. .+++|++|++++|...+. ++.....+++|++|++++|..... +
T Consensus 101 ~~~~~~L~~L~L~~~~-~~~~~~~~---l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l 176 (594)
T 2p1m_B 101 SSSYTWLEEIRLKRMV-VTDDCLEL---IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWL 176 (594)
T ss_dssp HHHCTTCCEEEEESCB-CCHHHHHH---HHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGG
T ss_pred HHhCCCCCeEEeeCcE-EcHHHHHH---HHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHH
Confidence 3456777777777774 33222111 32 567777888877754333 444445677788888877762211 1
Q ss_pred CCC-CCCCCccEEEEecCCCCCcCccc---cccCCCCCccEEEeecCCCcccccCc-CCCCCCceEEeccCcCccccccc
Q 002284 557 PEA-VLPSQLRVISIWDSGALKFLPEA---WMLDNNSSLEILDIRHCHLLTYIAGV-QLPPSLKQLEIYNCDNLRTLTAE 631 (943)
Q Consensus 557 ~~~-~~~~~L~~L~l~~~~~l~~~~~~---~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~~L~~L~l~~~~~L~~l~~~ 631 (943)
+.. ..+++|++|++++|. ..+... .....+++|++|++++|...+.++.. ...++|+.|++..+..--.....
T Consensus 177 ~~~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~ 254 (594)
T 2p1m_B 177 SHFPDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVY 254 (594)
T ss_dssp GGSCTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHH
T ss_pred HHHhhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhH
Confidence 111 124677777777775 111110 00124677777777777544443322 33456777776655320000000
Q ss_pred cCcccccccCCcccee-eeecCCCcccccchhhHHHHhhhhhcCCCcccccEEEeecCCCchh-hHhhhcccccccEEEe
Q 002284 632 EGIHSSRRHTSLLECL-EIHSCPSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKLES-IVERLDNKISLEVIEI 709 (943)
Q Consensus 632 ~~~~~~~~~~~~L~~L-~i~~c~~l~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~~~~l~~-~~~~~~~l~~L~~L~l 709 (943)
.+....+..+++|+.+ .+.+... ..+.... .. .++|++|++++|..... +...+..+++|++|++
T Consensus 255 ~~l~~~l~~~~~L~~Ls~~~~~~~-------~~l~~~~-----~~-~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l 321 (594)
T 2p1m_B 255 SGLSVALSGCKELRCLSGFWDAVP-------AYLPAVY-----SV-CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWV 321 (594)
T ss_dssp HHHHHHHHTCTTCCEEECCBTCCG-------GGGGGGH-----HH-HTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEE
T ss_pred HHHHHHHhcCCCcccccCCcccch-------hhHHHHH-----Hh-hCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeC
Confidence 0111122344444444 1211110 0000000 01 14677777777763222 2333556777777777
Q ss_pred eccCCcccccccccCCCCccEEeccCC--------CCCccc-CcCC-ccccccceeeeccccCCccCCCcC-CCCCCCCc
Q 002284 710 VSCENLKMLPHGLHKLWHLQEIDIQDC--------ENLVSF-PEGG-LLSAKLKRLVIYGCKKLEALPEGM-HNLSSLQY 778 (943)
Q Consensus 710 ~~~~~~~~~p~~~~~l~~L~~L~l~~~--------~~l~~~-p~~~-~~l~~L~~L~l~~~~~l~~~p~~~-~~l~~L~~ 778 (943)
++|-....++.....+++|++|++++| ..++.. ...+ ..+++|++|.+..+......+..+ ..+++|++
T Consensus 322 ~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~ 401 (594)
T 2p1m_B 322 LDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTR 401 (594)
T ss_dssp EGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCE
T ss_pred cCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcce
Confidence 776211122222334677777777432 222111 0011 125677777665554433322333 24677777
Q ss_pred eeec-----CCCCCccccCC------CCCCCCcceEEecCCcchhccccccCCCCCCCccEEEecCCCCcCcccCccccc
Q 002284 779 LTIG-----GVPSLLCFTED------GLFPTNLHSLEIDGMKIWKSLMQLGGFHRYTSLRRLAISGCDEDMVSFPLEDIR 847 (943)
Q Consensus 779 L~l~-----~~~~l~~~~~~------~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~ 847 (943)
|+++ +|..++..|.. ...+++|++|++++ .+...........+++|++|++++|. +.+.+..
T Consensus 402 L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~-----i~~~~~~ 474 (594)
T 2p1m_B 402 FRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAG-----DSDLGMH 474 (594)
T ss_dssp EEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCC-----SSHHHHH
T ss_pred eEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCC-----CcHHHHH
Confidence 7777 45555533321 11246777777765 22222111112236777777777752 2222211
Q ss_pred ccCCCCCCccEEEeecCCCCcccc---cccCCCCCCeEeecCCCC
Q 002284 848 LGTTLPACLTQLEIFNFPNLERLS---SSICDQNLTSLKLTNCPK 889 (943)
Q Consensus 848 ~~~~~~~~L~~L~l~~~~~l~~l~---~~~~~~~L~~L~l~~C~~ 889 (943)
.....+++|++|++++|+- +... ....+++|+.|++++|+.
T Consensus 475 ~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 475 HVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 1111356777777777764 3211 111367777788877764
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.76 E-value=3.7e-19 Score=189.19 Aligned_cols=84 Identities=19% Similarity=0.256 Sum_probs=38.2
Q ss_pred ccCcccEEEecCcccc-ccCccc--cCCCCCceeecCCCcccccchhhhhc-----cccceeecCCCcccccccHHHhcc
Q 002284 87 KLQRLRVFSLRGYLIS-EVPDSI--GDLSYLRYLNLSGTQIRTLPESVNKL-----YNLHTLLLEGCRELKKKCADMGNL 158 (943)
Q Consensus 87 ~l~~L~~L~L~~n~i~-~lp~~~--~~l~~L~~L~Ls~n~i~~lp~~i~~L-----~~L~~L~L~~n~~~~~~p~~~~~L 158 (943)
++++|++|++++|.++ .+|..+ +.+++|++|+|++|+++.+|..++.+ ++|++|++++|.+.+..|..|+++
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 3444444444444443 234433 44444444444444444444444444 444444444444333333444444
Q ss_pred ccCceEEcCCCC
Q 002284 159 IKLHHLNNSNTD 170 (943)
Q Consensus 159 ~~L~~L~l~~n~ 170 (943)
++|++|++++|.
T Consensus 173 ~~L~~L~Ls~N~ 184 (312)
T 1wwl_A 173 PALSTLDLSDNP 184 (312)
T ss_dssp SSCCEEECCSCT
T ss_pred CCCCEEECCCCC
Confidence 444444444444
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.76 E-value=1.8e-18 Score=195.22 Aligned_cols=239 Identities=13% Similarity=0.102 Sum_probs=149.4
Q ss_pred CccceeceEEEecCCCcCccchhccCCCCcCeeeccCCCCCcccCCCCCCCCccEEEEecCCCCCcCccccccCCCCCcc
Q 002284 513 GLSFRLEHLELINCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPEAVLPSQLRVISIWDSGALKFLPEAWMLDNNSSLE 592 (943)
Q Consensus 513 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~ 592 (943)
..+++|+.|++++|.+.+..|..+..+++|++|+|++|......+ ...+++|++|++++|. +..++. .++|+
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~------~~~L~ 102 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLV------GPSIE 102 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEEE------CTTCC
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCCC------CCCcC
Confidence 345578888888887776667778888888888888886432222 3334445555554443 222221 24444
Q ss_pred EEEeecCCCcccccCcCCCCCCceEEeccCcCccccccccCcccccccCCccceeeeecCCCcccccchhhHHHHhhhhh
Q 002284 593 ILDIRHCHLLTYIAGVQLPPSLKQLEIYNCDNLRTLTAEEGIHSSRRHTSLLECLEIHSCPSLTCLISKNELRAALDYLV 672 (943)
Q Consensus 593 ~L~l~~n~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~ 672 (943)
+|++++|.+.+ ++.
T Consensus 103 ~L~L~~N~l~~------------------------~~~------------------------------------------ 116 (487)
T 3oja_A 103 TLHAANNNISR------------------------VSC------------------------------------------ 116 (487)
T ss_dssp EEECCSSCCCC------------------------EEE------------------------------------------
T ss_pred EEECcCCcCCC------------------------CCc------------------------------------------
Confidence 44444443222 110
Q ss_pred cCCCcccccEEEeecCCCchhhHhhhcccccccEEEeeccCCccccccccc-CCCCccEEeccCCCCCcccCcCCccccc
Q 002284 673 VGNLPQALKFLSIWHCSKLESIVERLDNKISLEVIEIVSCENLKMLPHGLH-KLWHLQEIDIQDCENLVSFPEGGLLSAK 751 (943)
Q Consensus 673 ~~~lp~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~-~l~~L~~L~l~~~~~l~~~p~~~~~l~~ 751 (943)
..+ ++|+.|++++|...+..+..+..+++|+.|++++|.+.+..|..+. .+++|++|++++|. ++.+|. ...+++
T Consensus 117 -~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~-~~~l~~ 192 (487)
T 3oja_A 117 -SRG-QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKG-QVVFAK 192 (487)
T ss_dssp -CCC-SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEEC-CCCCTT
T ss_pred -ccc-CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-cccccc-cccCCC
Confidence 011 3566666666665555555667777888888888877777776665 67888888888884 444443 234678
Q ss_pred cceeeeccccCCccCCCcCCCCCCCCceeecCCCCCccccCCCCCCCCcceEEecCCcchhccccccCCCCCCCccEEEe
Q 002284 752 LKRLVIYGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFTEDGLFPTNLHSLEIDGMKIWKSLMQLGGFHRYTSLRRLAI 831 (943)
Q Consensus 752 L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l 831 (943)
|+.|++++|... .+|..+..+++|+.|++++|. +..+|.....+++|+.|++++|+......+ ..+..++.|+.+++
T Consensus 193 L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~-~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 193 LKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFHCGTLR-DFFSKNQRVQTVAK 269 (487)
T ss_dssp CCEEECCSSCCC-EECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCBCHHHHH-HHHTTCHHHHHHHH
T ss_pred CCEEECCCCCCC-CCCHhHcCCCCccEEEecCCc-CcccchhhccCCCCCEEEcCCCCCcCcchH-HHHHhCCCCcEEec
Confidence 888888887744 455567778888888888876 445777666667888888888876622221 13556677777766
Q ss_pred c
Q 002284 832 S 832 (943)
Q Consensus 832 ~ 832 (943)
+
T Consensus 270 ~ 270 (487)
T 3oja_A 270 Q 270 (487)
T ss_dssp H
T ss_pred c
Confidence 5
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.75 E-value=6.9e-19 Score=187.09 Aligned_cols=83 Identities=16% Similarity=0.187 Sum_probs=37.6
Q ss_pred hhcccccCeEEeecCCCcccchhhhhhhcCccceeceEEEecCCCc-Cccchhcc-------CCCCcCeeeccCCCCCcc
Q 002284 484 LQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDL-EKLPKSLL-------SLSSLTEMRIHNCSSLVS 555 (943)
Q Consensus 484 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~-------~l~~L~~L~L~~n~~l~~ 555 (943)
+...++|+.|++++|.. .++.. +. ..|+.|++++|.+. ..+|..+. .+++|++|++++|...+.
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~----~~--~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 110 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQ----FT--DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGT 110 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHH----HH--HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSC
T ss_pred EccCCCceeEeeccccc--ccHHH----HH--HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccch
Confidence 34455566666665543 33332 11 11555555555442 23333332 455555555555544333
Q ss_pred cCCCC---CCCCccEEEEecCC
Q 002284 556 FPEAV---LPSQLRVISIWDSG 574 (943)
Q Consensus 556 ~~~~~---~~~~L~~L~l~~~~ 574 (943)
+|... .+++|++|++++|.
T Consensus 111 ~~~~~~~~~l~~L~~L~Ls~N~ 132 (312)
T 1wwl_A 111 APPPLLEATGPDLNILNLRNVS 132 (312)
T ss_dssp CCCCSSSCCSCCCSEEEEESCB
T ss_pred hHHHHHHhcCCCccEEEccCCC
Confidence 43321 23444444444444
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.73 E-value=8.8e-18 Score=175.40 Aligned_cols=203 Identities=18% Similarity=0.113 Sum_probs=120.5
Q ss_pred CcccEEEecCccccccCc-cccCCCCCceeecCCCcccccc-hhhhhccccceeecCCCcccccccHHHhccccCceEEc
Q 002284 89 QRLRVFSLRGYLISEVPD-SIGDLSYLRYLNLSGTQIRTLP-ESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNN 166 (943)
Q Consensus 89 ~~L~~L~L~~n~i~~lp~-~~~~l~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l 166 (943)
+.|++|++++|.++.++. .|.++++|++|++++|.++.++ ..|+++++|++|++++|.+.+..|..|.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 356666666666666643 5666666666666666666664 35666666666666666544444455666666666666
Q ss_pred CCCCCCccccc-cccccccccccCceEeccCCCCCcccccCcccccCceeecccccccCccchhhcccCCCCCCCeEEEE
Q 002284 167 SNTDSLEEMPL-GIGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGKKNLKVLMLE 245 (943)
Q Consensus 167 ~~n~~~~~~p~-~~~~L~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 245 (943)
++|. +..++. .++.+++|++|+...+ .+.. ..++..+..+++|+.|+++
T Consensus 108 ~~n~-l~~~~~~~~~~l~~L~~L~l~~n------------------------~l~~-----~~l~~~~~~l~~L~~L~Ls 157 (276)
T 2z62_A 108 VETN-LASLENFPIGHLKTLKELNVAHN------------------------LIQS-----FKLPEYFSNLTNLEHLDLS 157 (276)
T ss_dssp TTSC-CCCSTTCCCTTCTTCCEEECCSS------------------------CCCC-----CCCCGGGGGCTTCCEEECC
T ss_pred CCCC-ccccCchhcccCCCCCEEECcCC------------------------ccce-----ecCchhhccCCCCCEEECC
Confidence 6666 333333 4556666655522111 0000 0012224555667777777
Q ss_pred eecCCCCCCchhhhhHHhhhccCCCCCCcc-eEEEEeeCCCCCCcccCCCCcCCeeEEEEeCCCCCCCCC-CCCCCCCCC
Q 002284 246 WTRSTNGLSSREAQTEKGVLDMLKPHRSLE-QFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSMP-SVGQLPSLK 323 (943)
Q Consensus 246 ~n~~~~~~~~~~~~~~~~~l~~l~~~~~L~-~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~l~~L~ 323 (943)
+|.++.... ..+..+..++.+. .|+++++....+|..... ..+|++|++++|.+.+..+ .++.+++|+
T Consensus 158 ~N~l~~~~~--------~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~--~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 227 (276)
T 2z62_A 158 SNKIQSIYC--------TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK--EIRLKELALDTNQLKSVPDGIFDRLTSLQ 227 (276)
T ss_dssp SSCCCEECG--------GGGHHHHTCTTCCEEEECCSSCCCEECTTSSC--SCCEEEEECCSSCCSCCCTTTTTTCCSCC
T ss_pred CCCCCcCCH--------HHhhhhhhccccceeeecCCCcccccCccccC--CCcccEEECCCCceeecCHhHhccccccc
Confidence 666643221 1112222233333 677777777766665543 4589999999999877666 578899999
Q ss_pred eeEEecCc
Q 002284 324 HLEVRGMS 331 (943)
Q Consensus 324 ~L~L~~~~ 331 (943)
+|++++|+
T Consensus 228 ~L~l~~N~ 235 (276)
T 2z62_A 228 KIWLHTNP 235 (276)
T ss_dssp EEECCSSC
T ss_pred EEEccCCc
Confidence 99999987
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.73 E-value=1.6e-18 Score=195.64 Aligned_cols=237 Identities=12% Similarity=0.076 Sum_probs=159.9
Q ss_pred hcccccCeEEeecCCCcccchhhhhhhcCccceeceEEEecCCCcCccchhccCCCCcCeeeccCCCCCcccCCCCCCCC
Q 002284 485 QDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPEAVLPSQ 564 (943)
Q Consensus 485 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~l~~~~~~~~~~~ 564 (943)
..+++|+.|++++|. ++.++... |..+++|++|++++|.+.+..| +..+++|++|++++|. ++.++. .++
T Consensus 31 ~~~~~L~~L~Ls~n~-l~~~~~~~---~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~-l~~l~~---~~~ 100 (487)
T 3oja_A 31 QSAWNVKELDLSGNP-LSQISAAD---LAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNY-VQELLV---GPS 100 (487)
T ss_dssp TTGGGCCEEECCSSC-CCCCCGGG---GTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSE-EEEEEE---CTT
T ss_pred ccCCCccEEEeeCCc-CCCCCHHH---HhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCc-CCCCCC---CCC
Confidence 455689999999985 66555444 8899999999999998766555 8899999999999996 444443 388
Q ss_pred ccEEEEecCCCCCcCccccccCCCCCccEEEeecCCCcccccCc-CCCCCCceEEeccCcCccccccccCcccccccCCc
Q 002284 565 LRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLTYIAGV-QLPPSLKQLEIYNCDNLRTLTAEEGIHSSRRHTSL 643 (943)
Q Consensus 565 L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~ 643 (943)
|++|++++|.... ++.. .+++|++|++++|.+.+..+.. ..+
T Consensus 101 L~~L~L~~N~l~~-~~~~----~l~~L~~L~L~~N~l~~~~~~~~~~l-------------------------------- 143 (487)
T 3oja_A 101 IETLHAANNNISR-VSCS----RGQGKKNIYLANNKITMLRDLDEGCR-------------------------------- 143 (487)
T ss_dssp CCEEECCSSCCCC-EEEC----CCSSCEEEECCSSCCCSGGGBCGGGG--------------------------------
T ss_pred cCEEECcCCcCCC-CCcc----ccCCCCEEECCCCCCCCCCchhhcCC--------------------------------
Confidence 9999999998544 3332 4688999999998765433211 112
Q ss_pred cceeeeecCCCcccccchhhHHHHhhhhhcCCCcccccEEEeecCCCchhhHhhhc-ccccccEEEeeccCCcccccccc
Q 002284 644 LECLEIHSCPSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKLESIVERLD-NKISLEVIEIVSCENLKMLPHGL 722 (943)
Q Consensus 644 L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~~~~l~~~~~~~~-~l~~L~~L~l~~~~~~~~~p~~~ 722 (943)
++|+.|++++|...+..|..+. .+++|++|++++|.+.+..+ .
T Consensus 144 ----------------------------------~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~ 187 (487)
T 3oja_A 144 ----------------------------------SRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--Q 187 (487)
T ss_dssp ----------------------------------SSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--C
T ss_pred ----------------------------------CCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc--c
Confidence 2455555555554444444443 56777777777776655422 3
Q ss_pred cCCCCccEEeccCCCCCcccCcCCccccccceeeeccccCCccCCCcCCCCCCCCceeecCCCCC-ccccCCCCCCCCcc
Q 002284 723 HKLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVIYGCKKLEALPEGMHNLSSLQYLTIGGVPSL-LCFTEDGLFPTNLH 801 (943)
Q Consensus 723 ~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l-~~~~~~~~~~~~L~ 801 (943)
..+++|++|++++|. ++.+|..+..+++|+.|++++|... .+|..+..+++|+.|++++|+.. ..+|.....++.|+
T Consensus 188 ~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~ 265 (487)
T 3oja_A 188 VVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ 265 (487)
T ss_dssp CCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHH
T ss_pred ccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCc
Confidence 357777777777773 4456666667777778888777643 46777777777888888777755 34444333445666
Q ss_pred eEEec
Q 002284 802 SLEID 806 (943)
Q Consensus 802 ~L~l~ 806 (943)
.++++
T Consensus 266 ~l~~~ 270 (487)
T 3oja_A 266 TVAKQ 270 (487)
T ss_dssp HHHHH
T ss_pred EEecc
Confidence 66654
No 74
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.72 E-value=3.4e-17 Score=170.18 Aligned_cols=100 Identities=27% Similarity=0.362 Sum_probs=68.6
Q ss_pred hccCcccEEEecCccccccCccccCCCCCceeecCCCcccccchhhhhccccceeecCCCcccccccHHHhccccCceEE
Q 002284 86 LKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLN 165 (943)
Q Consensus 86 ~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~ 165 (943)
..+++|+.|++++|.+..++ .+..+++|++|++++|.+..++ .++.+++|++|++++|.+.+..|..|+++++|++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 36777888888888777765 4777888888888888877764 677788888888888765444445577788888888
Q ss_pred cCCCCCCcccccc-cccccccccc
Q 002284 166 NSNTDSLEEMPLG-IGKLTCLLTL 188 (943)
Q Consensus 166 l~~n~~~~~~p~~-~~~L~~L~~L 188 (943)
+++|. +..+|.. ++.+++|++|
T Consensus 116 L~~n~-l~~~~~~~~~~l~~L~~L 138 (272)
T 3rfs_A 116 LVENQ-LQSLPDGVFDKLTNLTYL 138 (272)
T ss_dssp CTTSC-CCCCCTTTTTTCTTCCEE
T ss_pred CCCCc-CCccCHHHhccCCCCCEE
Confidence 88877 4444332 3444444433
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.72 E-value=7.7e-17 Score=167.34 Aligned_cols=82 Identities=23% Similarity=0.347 Sum_probs=42.4
Q ss_pred CcccEEEecCccccccC-ccccCCCCCceeecCCCcccccch-hhhhccccceeecCCCcccccccHHHhccccCceEEc
Q 002284 89 QRLRVFSLRGYLISEVP-DSIGDLSYLRYLNLSGTQIRTLPE-SVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNN 166 (943)
Q Consensus 89 ~~L~~L~L~~n~i~~lp-~~~~~l~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l 166 (943)
+.+++|++++|.++.+| ..|.++++|++|+|++|.++.+|. .|.++++|++|++++|.+....+..|.++++|++|++
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence 34555555555555553 245555555555555555555543 2355555555555555433222233455555555555
Q ss_pred CCCC
Q 002284 167 SNTD 170 (943)
Q Consensus 167 ~~n~ 170 (943)
++|.
T Consensus 117 ~~n~ 120 (270)
T 2o6q_A 117 DRNQ 120 (270)
T ss_dssp CSSC
T ss_pred CCCc
Confidence 5554
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.71 E-value=5.2e-17 Score=169.52 Aligned_cols=94 Identities=19% Similarity=0.214 Sum_probs=76.1
Q ss_pred cEEEecCccccccCccccCCCCCceeecCCCcccccch-hhhhccccceeecCCCcccccccHHHhccccCceEEcCCCC
Q 002284 92 RVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPE-SVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNTD 170 (943)
Q Consensus 92 ~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l~~n~ 170 (943)
.+.+..+..+..+|..+. ++|++|++++|.++.+|. .|+++++|++|++++|.+.+..+..|+++++|++|++++|.
T Consensus 10 ~~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 10 ITYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp TEEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred ceEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 346667777888888775 589999999999999965 89999999999999997555555679999999999999999
Q ss_pred CCcccc-cccccccccccc
Q 002284 171 SLEEMP-LGIGKLTCLLTL 188 (943)
Q Consensus 171 ~~~~~p-~~~~~L~~L~~L 188 (943)
+..++ ..++++++|++|
T Consensus 88 -l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 88 -IQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp -CCEECTTTTTTCTTCCEE
T ss_pred -cCccChhhhcCCccccEE
Confidence 44444 456666666666
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.71 E-value=1.3e-16 Score=165.70 Aligned_cols=95 Identities=21% Similarity=0.353 Sum_probs=51.0
Q ss_pred cccEEEecCccccccCccccCCCCCceeecCCCcccccc-hhhhhccccceeecCCCcccccccH-HHhccccCceEEcC
Q 002284 90 RLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLP-ESVNKLYNLHTLLLEGCRELKKKCA-DMGNLIKLHHLNNS 167 (943)
Q Consensus 90 ~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~n~~~~~~p~-~~~~L~~L~~L~l~ 167 (943)
..++++++++.++.+|..+. ++|++|+|++|+|+.+| ..|+++++|++|++++|.+ ..+|. .|.++++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCC-SCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCcc-CeeChhhhcCCCCCCEEECC
Confidence 34556666666666655443 45666666666666654 3556666666666666543 23333 34556666666666
Q ss_pred CCCCCcccccc-cccccccccc
Q 002284 168 NTDSLEEMPLG-IGKLTCLLTL 188 (943)
Q Consensus 168 ~n~~~~~~p~~-~~~L~~L~~L 188 (943)
+|. +..+|.. ++.+++|++|
T Consensus 94 ~n~-l~~~~~~~~~~l~~L~~L 114 (270)
T 2o6q_A 94 DNK-LQALPIGVFDQLVNLAEL 114 (270)
T ss_dssp SSC-CCCCCTTTTTTCSSCCEE
T ss_pred CCc-CCcCCHhHcccccCCCEE
Confidence 665 3444332 3444444444
No 78
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.70 E-value=1.4e-16 Score=166.72 Aligned_cols=87 Identities=22% Similarity=0.169 Sum_probs=47.7
Q ss_pred ccchhhhccCcccEEEecCcccccc-CccccCCCCCceeecCCCcccccchhhhhccccceeecCCCcccccccHHHhcc
Q 002284 80 SILPRLLKLQRLRVFSLRGYLISEV-PDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNL 158 (943)
Q Consensus 80 ~~~~~~~~l~~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L 158 (943)
.+|.+++ +.+++|+|++|.++.+ |..|..+++|++|+|++|.|+.+|.. +.+++|++|++++|. +..+|..+..+
T Consensus 24 ~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~-l~~l~~~~~~l 99 (290)
T 1p9a_G 24 ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQ-LQSLPLLGQTL 99 (290)
T ss_dssp SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSC-CSSCCCCTTTC
T ss_pred cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCc-CCcCchhhccC
Confidence 4444443 4555566666555554 34555556666666666655555432 455556666665553 34555555555
Q ss_pred ccCceEEcCCCC
Q 002284 159 IKLHHLNNSNTD 170 (943)
Q Consensus 159 ~~L~~L~l~~n~ 170 (943)
++|++|++++|.
T Consensus 100 ~~L~~L~l~~N~ 111 (290)
T 1p9a_G 100 PALTVLDVSFNR 111 (290)
T ss_dssp TTCCEEECCSSC
T ss_pred CCCCEEECCCCc
Confidence 555556555555
No 79
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.69 E-value=2.3e-16 Score=160.59 Aligned_cols=201 Identities=17% Similarity=0.135 Sum_probs=125.5
Q ss_pred CcccccEEEeecCCCchhhHhhhcccccccEEEeeccCCcccc-cccccCCCCccEEeccCCCCCcccCc-CCccccccc
Q 002284 676 LPQALKFLSIWHCSKLESIVERLDNKISLEVIEIVSCENLKML-PHGLHKLWHLQEIDIQDCENLVSFPE-GGLLSAKLK 753 (943)
Q Consensus 676 lp~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~-p~~~~~l~~L~~L~l~~~~~l~~~p~-~~~~l~~L~ 753 (943)
+|+++++|++++|...+..+..+.++++|++|++++|..++.+ +..|.++++|++|++++|..++.+|. .+..+++|+
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108 (239)
T ss_dssp CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence 6678899999887655444446888888888888888744444 45778888888888888335666664 456688888
Q ss_pred eeeeccccCCccCCCcCCCCCCCC---ceeecCCCCCccccCC-CCCCCCcc-eEEecCCcchhccccccCCCCCCCccE
Q 002284 754 RLVIYGCKKLEALPEGMHNLSSLQ---YLTIGGVPSLLCFTED-GLFPTNLH-SLEIDGMKIWKSLMQLGGFHRYTSLRR 828 (943)
Q Consensus 754 ~L~l~~~~~l~~~p~~~~~l~~L~---~L~l~~~~~l~~~~~~-~~~~~~L~-~L~l~~c~~l~~~~~~~~~~~l~~L~~ 828 (943)
+|++++|.. ..+|. +..+++|+ +|++++|+.++.++.. +..+++|+ +|++++|... .++. ..+.. ++|++
T Consensus 109 ~L~l~~n~l-~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~-~~~~~-~~L~~ 183 (239)
T 2xwt_C 109 FLGIFNTGL-KMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQG-YAFNG-TKLDA 183 (239)
T ss_dssp EEEEEEECC-CSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECT-TTTTT-CEEEE
T ss_pred EEeCCCCCC-ccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCH-hhcCC-CCCCE
Confidence 888888874 44775 77777777 8888888667776654 33456777 7777776544 2222 23333 66777
Q ss_pred EEecCCCCcCcccCcccccccCCCC-CCccEEEeecCCCCcccccccCCCCCCeEeecCCC
Q 002284 829 LAISGCDEDMVSFPLEDIRLGTTLP-ACLTQLEIFNFPNLERLSSSICDQNLTSLKLTNCP 888 (943)
Q Consensus 829 L~l~~c~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~C~ 888 (943)
|++++| ..++.++.+.. ..+ ++|++|++++ .+++.+|.. .+++|+.|.+.++.
T Consensus 184 L~L~~n-~~l~~i~~~~~----~~l~~~L~~L~l~~-N~l~~l~~~-~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 184 VYLNKN-KYLTVIDKDAF----GGVYSGPSLLDVSQ-TSVTALPSK-GLEHLKELIARNTW 237 (239)
T ss_dssp EECTTC-TTCCEECTTTT----TTCSBCCSEEECTT-CCCCCCCCT-TCTTCSEEECTTC-
T ss_pred EEcCCC-CCcccCCHHHh----hccccCCcEEECCC-CccccCChh-HhccCceeeccCcc
Confidence 777662 22444433221 123 4555555554 234444443 44555555555443
No 80
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.68 E-value=8e-17 Score=170.40 Aligned_cols=190 Identities=18% Similarity=0.245 Sum_probs=107.4
Q ss_pred ccCcccEEEecCccccccCccccCCCCCceeecCCCcccccchhhhhccccceeecCCCcccccccHHHhccccCceEEc
Q 002284 87 KLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNN 166 (943)
Q Consensus 87 ~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l 166 (943)
.+++|++|++++|.+..+| .+..+++|++|++++|.+..+|. ++.+++|++|++++|. +..+| .+..+++|++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEEC
T ss_pred HcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEEC
Confidence 5566666666666666665 46666666666666666666655 6666666666666665 33333 4666666666666
Q ss_pred CCCCCCccccccccccccccccCceEeccCCCCCcccccCcccccCceeecccccccCccchhhcccCCCCCCCeEEEEe
Q 002284 167 SNTDSLEEMPLGIGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGKKNLKVLMLEW 246 (943)
Q Consensus 167 ~~n~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 246 (943)
++|. +..+|. ++.+++|++|+...+ .+... .. +..+++|+.|++++
T Consensus 115 ~~n~-l~~~~~-l~~l~~L~~L~l~~n------------------------~l~~~-------~~-l~~l~~L~~L~l~~ 160 (308)
T 1h6u_A 115 TSTQ-ITDVTP-LAGLSNLQVLYLDLN------------------------QITNI-------SP-LAGLTNLQYLSIGN 160 (308)
T ss_dssp TTSC-CCCCGG-GTTCTTCCEEECCSS------------------------CCCCC-------GG-GGGCTTCCEEECCS
T ss_pred CCCC-CCCchh-hcCCCCCCEEECCCC------------------------ccCcC-------cc-ccCCCCccEEEccC
Confidence 6666 444443 555555554421111 00000 00 33445666666666
Q ss_pred ecCCCCCCchhhhhHHhhhccCCCCCCcceEEEEeeCCCCCCcccCCCCcCCeeEEEEeCCCCCCCCCCCCCCCCCCeeE
Q 002284 247 TRSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSMPSVGQLPSLKHLE 326 (943)
Q Consensus 247 n~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~ 326 (943)
|.++.. ..+..+++|+.|+++++....++. + ..+++|++|++++|.+.+.. ++..+++|+.|+
T Consensus 161 n~l~~~-------------~~l~~l~~L~~L~l~~n~l~~~~~-l--~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~ 223 (308)
T 1h6u_A 161 AQVSDL-------------TPLANLSKLTTLKADDNKISDISP-L--ASLPNLIEVHLKNNQISDVS-PLANTSNLFIVT 223 (308)
T ss_dssp SCCCCC-------------GGGTTCTTCCEEECCSSCCCCCGG-G--GGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEE
T ss_pred CcCCCC-------------hhhcCCCCCCEEECCCCccCcChh-h--cCCCCCCEEEccCCccCccc-cccCCCCCCEEE
Confidence 655311 114445566666666665555554 2 23667777777777765443 466677777777
Q ss_pred EecCc
Q 002284 327 VRGMS 331 (943)
Q Consensus 327 L~~~~ 331 (943)
+++|+
T Consensus 224 l~~N~ 228 (308)
T 1h6u_A 224 LTNQT 228 (308)
T ss_dssp EEEEE
T ss_pred ccCCe
Confidence 77765
No 81
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.68 E-value=2.8e-16 Score=166.85 Aligned_cols=203 Identities=18% Similarity=0.165 Sum_probs=132.1
Q ss_pred CccceeceEEEecCCCcCccchhc--cCCCCcCeeeccCCCCCcccCC-----CCCCCCccEEEEecCCCCCcCcccccc
Q 002284 513 GLSFRLEHLELINCQDLEKLPKSL--LSLSSLTEMRIHNCSSLVSFPE-----AVLPSQLRVISIWDSGALKFLPEAWML 585 (943)
Q Consensus 513 ~~l~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~L~~n~~l~~~~~-----~~~~~~L~~L~l~~~~~l~~~~~~~~~ 585 (943)
..+++|++|++++|.+.+..|..+ ..+++|++|++++|......+. ...+++|++|++++|......+.. +
T Consensus 88 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~--~ 165 (310)
T 4glp_A 88 LAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQ--V 165 (310)
T ss_dssp HHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTS--C
T ss_pred cccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHH--h
Confidence 345678999999998887788777 7888899999998875543331 113567777777777754444444 3
Q ss_pred CCCCCccEEEeecCCCccc--ccCcCCCCCCceEEeccCcCccccccccCcccccccCCccceeeeecCCCcccccchhh
Q 002284 586 DNNSSLEILDIRHCHLLTY--IAGVQLPPSLKQLEIYNCDNLRTLTAEEGIHSSRRHTSLLECLEIHSCPSLTCLISKNE 663 (943)
Q Consensus 586 ~~l~~L~~L~l~~n~~~~~--~~~~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~ 663 (943)
+.+++|++|++++|++.+. ++...
T Consensus 166 ~~l~~L~~L~Ls~N~l~~~~~~~~~~------------------------------------------------------ 191 (310)
T 4glp_A 166 RAFPALTSLDLSDNPGLGERGLMAAL------------------------------------------------------ 191 (310)
T ss_dssp CCCTTCCEEECCSCTTCHHHHHHTTS------------------------------------------------------
T ss_pred ccCCCCCEEECCCCCCccchhhhHHH------------------------------------------------------
Confidence 4677777777777765432 11000
Q ss_pred HHHHhhhhhcCCCcccccEEEeecCCCchhhHh----hhcccccccEEEeeccCCcccccccccCC---CCccEEeccCC
Q 002284 664 LRAALDYLVVGNLPQALKFLSIWHCSKLESIVE----RLDNKISLEVIEIVSCENLKMLPHGLHKL---WHLQEIDIQDC 736 (943)
Q Consensus 664 ~~~~~~~~~~~~lp~~L~~L~l~~~~~l~~~~~----~~~~l~~L~~L~l~~~~~~~~~p~~~~~l---~~L~~L~l~~~ 736 (943)
..+.+ ++|++|++++|.. +.++. .+..+++|++|++++|.+.+..|..+..+ ++|++|++++|
T Consensus 192 --------~~~~l-~~L~~L~Ls~N~l-~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N 261 (310)
T 4glp_A 192 --------CPHKF-PAIQNLALRNTGM-ETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA 261 (310)
T ss_dssp --------CTTSS-CCCCSCBCCSSCC-CCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS
T ss_pred --------hhhcC-CCCCEEECCCCCC-CchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC
Confidence 00111 2455556666543 22222 24677888888888888877777666665 58888888888
Q ss_pred CCCcccCcCCccccccceeeeccccCCccCCCcCCCCCCCCceeecCCCC
Q 002284 737 ENLVSFPEGGLLSAKLKRLVIYGCKKLEALPEGMHNLSSLQYLTIGGVPS 786 (943)
Q Consensus 737 ~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~ 786 (943)
. ++.+|..+. ++|++|++++|... .+|. +..+++|++|++++|+.
T Consensus 262 ~-l~~lp~~~~--~~L~~L~Ls~N~l~-~~~~-~~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 262 G-LEQVPKGLP--AKLRVLDLSSNRLN-RAPQ-PDELPEVDNLTLDGNPF 306 (310)
T ss_dssp C-CCSCCSCCC--SCCSCEECCSCCCC-SCCC-TTSCCCCSCEECSSTTT
T ss_pred C-CCchhhhhc--CCCCEEECCCCcCC-CCch-hhhCCCccEEECcCCCC
Confidence 4 457777654 58888888887744 4443 56777788888877763
No 82
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.68 E-value=5.1e-17 Score=168.84 Aligned_cols=224 Identities=17% Similarity=0.205 Sum_probs=139.8
Q ss_pred cCcccEEEecCccccccCccccCCCCCceeecCCCcccccchhhhhccccceeecCCCcccccccHHHhccccCceEEcC
Q 002284 88 LQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNS 167 (943)
Q Consensus 88 l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l~ 167 (943)
+..+..+++.++.+..+ .....+++|+.|++++|.++.++ .++.+++|++|++++|.+. .+ ..++++++|++|+++
T Consensus 18 ~~~l~~l~l~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~-~~-~~l~~l~~L~~L~L~ 93 (272)
T 3rfs_A 18 FAETIKANLKKKSVTDA-VTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLH-DI-SALKELTNLTYLILT 93 (272)
T ss_dssp HHHHHHHHHTCSCTTSE-ECHHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCC-CC-GGGTTCTTCCEEECT
T ss_pred HHHHHHHHhcCcccccc-cccccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCC-Cc-hhhcCCCCCCEEECC
Confidence 44555666777766554 34678899999999999999885 5899999999999999744 44 479999999999999
Q ss_pred CCCCCcccccc-ccccccccccCceEeccCCCCCcccccCcccccCceeecccccccCccchhhcccCCCCCCCeEEEEe
Q 002284 168 NTDSLEEMPLG-IGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGKKNLKVLMLEW 246 (943)
Q Consensus 168 ~n~~~~~~p~~-~~~L~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 246 (943)
+|. +..+|.. ++.+++|++|+...+ .+. ......+..+++|+.|++++
T Consensus 94 ~n~-l~~~~~~~~~~l~~L~~L~L~~n------------------------~l~------~~~~~~~~~l~~L~~L~L~~ 142 (272)
T 3rfs_A 94 GNQ-LQSLPNGVFDKLTNLKELVLVEN------------------------QLQ------SLPDGVFDKLTNLTYLNLAH 142 (272)
T ss_dssp TSC-CCCCCTTTTTTCTTCCEEECTTS------------------------CCC------CCCTTTTTTCTTCCEEECCS
T ss_pred CCc-cCccChhHhcCCcCCCEEECCCC------------------------cCC------ccCHHHhccCCCCCEEECCC
Confidence 998 5555543 667777666632111 000 00011134445555555555
Q ss_pred ecCCCCCCchhhhhHHhhhccCCCCCCcceEEEEeeCCCCCCcccCCCCcCCeeEEEEeCCCCCCCCC-CCCCCCCCCee
Q 002284 247 TRSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSMP-SVGQLPSLKHL 325 (943)
Q Consensus 247 n~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~l~~L~~L 325 (943)
|.+ ..+|.... ..+++|++|++++|.+.+..+ .++.+++|++|
T Consensus 143 n~l-----------------------------------~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 186 (272)
T 3rfs_A 143 NQL-----------------------------------QSLPKGVF-DKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDL 186 (272)
T ss_dssp SCC-----------------------------------CCCCTTTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred Ccc-----------------------------------CccCHHHh-ccCccCCEEECCCCCcCccCHHHhcCCccCCEE
Confidence 544 33333221 125666777777766665544 45666777777
Q ss_pred EEecCcCceeeCccccCCCCCCCCCCcceeecccccccccccccccCCccccCCcccEEeeccCCCccCCCCCCCC
Q 002284 326 EVRGMSRVKRLGSEFYGNDSPIPFPCLETLHFAEMQEWEEWIPHGCSQEIEGFPKLRELHIVRCSKLQGTLPTHLT 401 (943)
Q Consensus 326 ~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~ 401 (943)
++++|.... ++...++. +++|+.|++++|+ + .+.+++|+.+++.. ++++|.+|..+.
T Consensus 187 ~L~~N~l~~-~~~~~~~~-----l~~L~~L~l~~N~-----~-------~~~~~~l~~l~~~~-n~~~g~ip~~~~ 243 (272)
T 3rfs_A 187 RLYQNQLKS-VPDGVFDR-----LTSLQYIWLHDNP-----W-------DCTCPGIRYLSEWI-NKHSGVVRNSAG 243 (272)
T ss_dssp ECCSSCCSC-CCTTTTTT-----CTTCCEEECCSSC-----B-------CCCTTTTHHHHHHH-HHTGGGBBCTTS
T ss_pred ECCCCcCCc-cCHHHHhC-----CcCCCEEEccCCC-----c-------cccCcHHHHHHHHH-HhCCCcccCccc
Confidence 777665332 22222221 6666777766664 1 13466677777777 577777776553
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.67 E-value=6.6e-16 Score=157.17 Aligned_cols=125 Identities=15% Similarity=0.190 Sum_probs=69.1
Q ss_pred cccEEEeecCCCchhhHhhhccccccc---EEEeecc-CCcccccccccCCCCcc-EEeccCCCCCcccCcCCccccccc
Q 002284 679 ALKFLSIWHCSKLESIVERLDNKISLE---VIEIVSC-ENLKMLPHGLHKLWHLQ-EIDIQDCENLVSFPEGGLLSAKLK 753 (943)
Q Consensus 679 ~L~~L~l~~~~~l~~~~~~~~~l~~L~---~L~l~~~-~~~~~~p~~~~~l~~L~-~L~l~~~~~l~~~p~~~~~l~~L~ 753 (943)
+|++|++++|.. +.+|. +..+++|+ +|++++| .+.+..+..+.++++|+ +|++++|. ++.+|...+..++|+
T Consensus 106 ~L~~L~l~~n~l-~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~-l~~i~~~~~~~~~L~ 182 (239)
T 2xwt_C 106 LLKFLGIFNTGL-KMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG-FTSVQGYAFNGTKLD 182 (239)
T ss_dssp TCCEEEEEEECC-CSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC-CCEECTTTTTTCEEE
T ss_pred CCCEEeCCCCCC-ccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC-CcccCHhhcCCCCCC
Confidence 344445544432 22333 44444444 6666666 33333344566677777 77777763 446665544446677
Q ss_pred eeeeccccCCccC-CCcCCCC-CCCCceeecCCCCCccccCCCCCCCCcceEEecCCc
Q 002284 754 RLVIYGCKKLEAL-PEGMHNL-SSLQYLTIGGVPSLLCFTEDGLFPTNLHSLEIDGMK 809 (943)
Q Consensus 754 ~L~l~~~~~l~~~-p~~~~~l-~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~ 809 (943)
+|++++|..++.+ +..+..+ ++|++|++++|+ ++.+|.. .+++|+.|+++++.
T Consensus 183 ~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~-l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 183 AVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS-VTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp EEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC-CCCCCCT--TCTTCSEEECTTC-
T ss_pred EEEcCCCCCcccCCHHHhhccccCCcEEECCCCc-cccCChh--HhccCceeeccCcc
Confidence 7777776433344 3455666 677777777655 4455544 24666666666554
No 84
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.66 E-value=1.5e-15 Score=158.74 Aligned_cols=200 Identities=20% Similarity=0.209 Sum_probs=115.9
Q ss_pred ccCCCCcCeeeccCCCCCcccCCCCCCCCccEEEEecCCCCCcCccccccCCCCCccEEEeecCCCcccccCcCCCCCCc
Q 002284 536 LLSLSSLTEMRIHNCSSLVSFPEAVLPSQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLTYIAGVQLPPSLK 615 (943)
Q Consensus 536 ~~~l~~L~~L~L~~n~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~ 615 (943)
+..++++++++++++. ++.+|.. .+++++.|++++|......+.. +..+++|++|++++|.+.. ++....+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~-l~~ip~~-~~~~l~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRN-LTALPPD-LPKDTTILHLSENLLYTFSLAT--LMPYTRLTQLNLDRAELTK-LQVDGTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSC-CSSCCSC-CCTTCCEEECTTSCCSEEEGGG--GTTCTTCCEEECTTSCCCE-EECCSCCTTCC
T ss_pred ccccCCccEEECCCCC-CCcCCCC-CCCCCCEEEcCCCcCCccCHHH--hhcCCCCCEEECCCCccCc-ccCCCCCCcCC
Confidence 3455666666666654 4455432 3456677777777643333333 3478888888888876432 22222333344
Q ss_pred eEEeccCcCccccccccCcccccccCCccceeeeecCCCcccccchhhHHHHhhhhhcCCCcccccEEEeecCCCchhhH
Q 002284 616 QLEIYNCDNLRTLTAEEGIHSSRRHTSLLECLEIHSCPSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKLESIV 695 (943)
Q Consensus 616 ~L~l~~~~~L~~l~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~~~~l~~~~ 695 (943)
.| ++++|. ++.+|
T Consensus 81 ~L------------------------------------------------------------------~Ls~N~-l~~l~ 93 (290)
T 1p9a_G 81 TL------------------------------------------------------------------DLSHNQ-LQSLP 93 (290)
T ss_dssp EE------------------------------------------------------------------ECCSSC-CSSCC
T ss_pred EE------------------------------------------------------------------ECCCCc-CCcCc
Confidence 44 444332 22333
Q ss_pred hhhcccccccEEEeeccCCcccccccccCCCCccEEeccCCCCCcccCcC-CccccccceeeeccccCCccCCC-cCCCC
Q 002284 696 ERLDNKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEG-GLLSAKLKRLVIYGCKKLEALPE-GMHNL 773 (943)
Q Consensus 696 ~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~-~~~l~~L~~L~l~~~~~l~~~p~-~~~~l 773 (943)
..+..+++|++|++++|.+.+..|..|.++++|++|++++|. ++.+|.. +..+++|+.|++++|... .+|. .+..+
T Consensus 94 ~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l 171 (290)
T 1p9a_G 94 LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGL 171 (290)
T ss_dssp CCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCS-CCCTTTTTTC
T ss_pred hhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCC-CCccChhhcccccCCCEEECCCCcCC-ccCHHHhcCc
Confidence 444555666666666666665555666677777777777773 3444443 345667777777776643 4443 44667
Q ss_pred CCCCceeecCCCCCccccCCCCCCCCcceEEecCCcc
Q 002284 774 SSLQYLTIGGVPSLLCFTEDGLFPTNLHSLEIDGMKI 810 (943)
Q Consensus 774 ~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~ 810 (943)
++|++|++++|. +..+|.+....++|+.+++++|+.
T Consensus 172 ~~L~~L~L~~N~-l~~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 172 ENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp TTCCEEECCSSC-CCCCCTTTTTTCCCSEEECCSCCB
T ss_pred CCCCEEECCCCc-CCccChhhcccccCCeEEeCCCCc
Confidence 777777777665 456666666566677777776654
No 85
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.66 E-value=1.4e-15 Score=164.21 Aligned_cols=102 Identities=17% Similarity=0.119 Sum_probs=53.2
Q ss_pred hhccccccccCCCccccCCCCceeeeeEeecCccccccchhhhhhcccccCeEEeecCCCcccchhhhhhhcCccceece
Q 002284 441 YKDISNQMFLGGPLKLQLPKLDELDISIIIDGLSYIWQNETQLLQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEH 520 (943)
Q Consensus 441 ~l~ls~n~l~~~~~~~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~ 520 (943)
+++.+++.++..|... .+++++|+++ .+.+..++...|.++++|+.|++++|...+.++... |.+++++++
T Consensus 13 ~v~C~~~~Lt~iP~~l-~~~l~~L~Ls-----~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~---f~~L~~l~~ 83 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDL-PRNAIELRFV-----LTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV---FSNLPKLHE 83 (350)
T ss_dssp EEEEESTTCCSCCTTC-CTTCSEEEEE-----SCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTS---BCSCTTCCE
T ss_pred EEEecCCCCCccCcCc-CCCCCEEEcc-----CCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhH---hhcchhhhh
Confidence 3455566666655322 3456666666 334445555555666666666666665444444433 555555544
Q ss_pred -EEEecCCCcCccchhccCCCCcCeeeccCCC
Q 002284 521 -LELINCQDLEKLPKSLLSLSSLTEMRIHNCS 551 (943)
Q Consensus 521 -L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~ 551 (943)
+.+.+|.+....|.+|..+++|++|++++|.
T Consensus 84 ~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~ 115 (350)
T 4ay9_X 84 IRIEKANNLLYINPEAFQNLPNLQYLLISNTG 115 (350)
T ss_dssp EEEEEETTCCEECTTSBCCCTTCCEEEEEEEC
T ss_pred hhcccCCcccccCchhhhhccccccccccccc
Confidence 3333343333334455556666666666554
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.65 E-value=2.3e-16 Score=167.43 Aligned_cols=205 Identities=17% Similarity=0.138 Sum_probs=128.0
Q ss_pred ccCcccEEEecCccccc-cCccc--cCCCCCceeecCCCccccc-c----hhhhhccccceeecCCCcccccccHHHhcc
Q 002284 87 KLQRLRVFSLRGYLISE-VPDSI--GDLSYLRYLNLSGTQIRTL-P----ESVNKLYNLHTLLLEGCRELKKKCADMGNL 158 (943)
Q Consensus 87 ~l~~L~~L~L~~n~i~~-lp~~~--~~l~~L~~L~Ls~n~i~~l-p----~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L 158 (943)
.+++|++|++++|.+.. .|..+ ..+++|++|+|++|.+... | ..+..+++|++|++++|.+.+..|..|+.+
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 56779999999999875 47777 8899999999999998853 2 345678999999999998766666779999
Q ss_pred ccCceEEcCCCCCCcc--ccc--cccccccccccCceEeccCCCCCcccccCcccccCceeecccccccCccchhhcccC
Q 002284 159 IKLHHLNNSNTDSLEE--MPL--GIGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLD 234 (943)
Q Consensus 159 ~~L~~L~l~~n~~~~~--~p~--~~~~L~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~ 234 (943)
++|++|++++|.+.+. ++. .++.+++|++|+...+ .+... .......+.
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N------------------------~l~~l---~~~~~~l~~ 221 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT------------------------GMETP---TGVCAALAA 221 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS------------------------CCCCH---HHHHHHHHH
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC------------------------CCCch---HHHHHHHHh
Confidence 9999999999984432 322 2466777777732211 11100 011111134
Q ss_pred CCCCCCeEEEEeecCCCCCCchhhhhHHhhhccCCCCCCcceEEEEeeCCCCCCcccCCCCcCCeeEEEEeCCCCCCCCC
Q 002284 235 GKKNLKVLMLEWTRSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSMP 314 (943)
Q Consensus 235 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~~~~~~~ 314 (943)
.+++|++|++++|.++...+. .+..+..+++|+.|++++|....+|.++ .++|++|++++|++.+. |
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~--------~~~~~~~~~~L~~L~Ls~N~l~~lp~~~----~~~L~~L~Ls~N~l~~~-~ 288 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNP--------SAPRCMWSSALNSLNLSFAGLEQVPKGL----PAKLRVLDLSSNRLNRA-P 288 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCS--------CCSSCCCCTTCCCEECCSSCCCSCCSCC----CSCCSCEECCSCCCCSC-C
T ss_pred cCCCCCEEECCCCCCCccchh--------hHHhccCcCcCCEEECCCCCCCchhhhh----cCCCCEEECCCCcCCCC-c
Confidence 567777888877777533110 0112222345666666666555555544 24566666666665433 3
Q ss_pred CCCCCCCCCeeEEecCc
Q 002284 315 SVGQLPSLKHLEVRGMS 331 (943)
Q Consensus 315 ~~~~l~~L~~L~L~~~~ 331 (943)
.+..+++|+.|++++|+
T Consensus 289 ~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 289 QPDELPEVDNLTLDGNP 305 (310)
T ss_dssp CTTSCCCCSCEECSSTT
T ss_pred hhhhCCCccEEECcCCC
Confidence 34555556666665554
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.64 E-value=1.2e-17 Score=180.40 Aligned_cols=240 Identities=18% Similarity=0.128 Sum_probs=151.8
Q ss_pred hhhhcc--CcccEEEecCccccccCccccCCCCCceeecCCCcccc--cchhhhhccccceeecCCCcccccccHHHhcc
Q 002284 83 PRLLKL--QRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRT--LPESVNKLYNLHTLLLEGCRELKKKCADMGNL 158 (943)
Q Consensus 83 ~~~~~l--~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~--lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L 158 (943)
..+..+ +++++|++++|.+...+..+..+++|++|++++|.+.. +|..+..+++|++|++++|......|..++++
T Consensus 62 ~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~ 141 (336)
T 2ast_B 62 DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKN 141 (336)
T ss_dssp HHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTC
T ss_pred HHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcC
Confidence 334466 89999999999988876667789999999999998874 67788899999999999997666788889999
Q ss_pred ccCceEEcCCCCCCc--cccccccccccccccCceEeccCCCCCcccccCcccccCceeecccccccCccchhhcccCCC
Q 002284 159 IKLHHLNNSNTDSLE--EMPLGIGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGK 236 (943)
Q Consensus 159 ~~L~~L~l~~n~~~~--~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~~ 236 (943)
++|++|++++|..++ .+|..++.+++|++|+...+ ..+ ....+...+..+
T Consensus 142 ~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~--------------------------~~l--~~~~~~~~~~~l 193 (336)
T 2ast_B 142 SNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC--------------------------FDF--TEKHVQVAVAHV 193 (336)
T ss_dssp TTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC--------------------------TTC--CHHHHHHHHHHS
T ss_pred CCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCC--------------------------CCc--ChHHHHHHHHhc
Confidence 999999999983233 24444555555555521110 000 001122223344
Q ss_pred C-CCCeEEEEeecCCCCCCchhhhhHHhhhccCCCCCCcceEEEEeeCC--CCCCcccCCCCcCCeeEEEEeCCC-CCCC
Q 002284 237 K-NLKVLMLEWTRSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGG--KKFPTWLGYSLFSNLVTLKFQDCS-MCTS 312 (943)
Q Consensus 237 ~-~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~--~~~p~~~~~~~l~~L~~L~L~~n~-~~~~ 312 (943)
+ +|++|++++|.. .. ..+|..+. .+++|++|++++|. +.+.
T Consensus 194 ~~~L~~L~l~~~~~---------------------------------~~~~~~l~~~~~--~~~~L~~L~l~~~~~l~~~ 238 (336)
T 2ast_B 194 SETITQLNLSGYRK---------------------------------NLQKSDLSTLVR--RCPNLVHLDLSDSVMLKND 238 (336)
T ss_dssp CTTCCEEECCSCGG---------------------------------GSCHHHHHHHHH--HCTTCSEEECTTCTTCCGG
T ss_pred ccCCCEEEeCCCcc---------------------------------cCCHHHHHHHHh--hCCCCCEEeCCCCCcCCHH
Confidence 4 555555544421 11 12233332 26778888888887 4433
Q ss_pred CC-CCCCCCCCCeeEEecCcCceeeCccccCCCCCCCCCCcceeecccccccccccccccCCccccC-CcccEEeeccCC
Q 002284 313 MP-SVGQLPSLKHLEVRGMSRVKRLGSEFYGNDSPIPFPCLETLHFAEMQEWEEWIPHGCSQEIEGF-PKLRELHIVRCS 390 (943)
Q Consensus 313 ~~-~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~~-~~L~~L~l~~c~ 390 (943)
.+ .++.+++|++|++++|..+........+ .+++|+.|++++| +.. ..+..+ .+++.|++++ +
T Consensus 239 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~-----~~~~L~~L~l~~~--i~~-------~~~~~l~~~l~~L~l~~-n 303 (336)
T 2ast_B 239 CFQEFFQLNYLQHLSLSRCYDIIPETLLELG-----EIPTLKTLQVFGI--VPD-------GTLQLLKEALPHLQINC-S 303 (336)
T ss_dssp GGGGGGGCTTCCEEECTTCTTCCGGGGGGGG-----GCTTCCEEECTTS--SCT-------TCHHHHHHHSTTSEESC-C
T ss_pred HHHHHhCCCCCCEeeCCCCCCCCHHHHHHHh-----cCCCCCEEeccCc--cCH-------HHHHHHHhhCcceEEec-c
Confidence 33 6777888888888888633222111122 2788888888877 211 122333 3467777865 7
Q ss_pred CccCCCCCCC
Q 002284 391 KLQGTLPTHL 400 (943)
Q Consensus 391 ~l~~~~p~~l 400 (943)
++++..|..+
T Consensus 304 ~l~~~~~~~~ 313 (336)
T 2ast_B 304 HFTTIARPTI 313 (336)
T ss_dssp CSCCTTCSSC
T ss_pred cCccccCCcc
Confidence 8887777654
No 88
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.64 E-value=1.5e-15 Score=155.56 Aligned_cols=80 Identities=21% Similarity=0.229 Sum_probs=50.1
Q ss_pred CcccEEEecCccccccCccccCCCCCceeecCCCcccccc-hhhhhccccceeecCCCcccccccHHHhccccCceEEcC
Q 002284 89 QRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLP-ESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNS 167 (943)
Q Consensus 89 ~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l~ 167 (943)
...++++++++.++.+|..+. .+|++|+|++|.+..++ ..|+++++|++|++++|.+.+..|..|.++++|++|+++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 345566666666666665554 46666666666666663 356666666666666665444444456666666666666
Q ss_pred CCC
Q 002284 168 NTD 170 (943)
Q Consensus 168 ~n~ 170 (943)
+|.
T Consensus 92 ~n~ 94 (251)
T 3m19_A 92 NNQ 94 (251)
T ss_dssp TSC
T ss_pred CCc
Confidence 666
No 89
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.63 E-value=4.5e-15 Score=160.29 Aligned_cols=224 Identities=18% Similarity=0.135 Sum_probs=174.6
Q ss_pred CCcccccEEEeecCCCchhhHh-hhcccccccEEEeeccCCcccccc-cccCCCCccEEeccCCCCCcccCc-CCccccc
Q 002284 675 NLPQALKFLSIWHCSKLESIVE-RLDNKISLEVIEIVSCENLKMLPH-GLHKLWHLQEIDIQDCENLVSFPE-GGLLSAK 751 (943)
Q Consensus 675 ~lp~~L~~L~l~~~~~l~~~~~-~~~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~L~l~~~~~l~~~p~-~~~~l~~ 751 (943)
.+|+++++|++++|. ++.++. .|.++++|++|++++|++.+.+|. .|.++++++++.+.++..+..++. .+..+++
T Consensus 27 ~l~~~l~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~ 105 (350)
T 4ay9_X 27 DLPRNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPN 105 (350)
T ss_dssp TCCTTCSEEEEESCC-CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTT
T ss_pred CcCCCCCEEEccCCc-CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccc
Confidence 356789999999975 556654 689999999999999999887764 578899988765555446666654 5677899
Q ss_pred cceeeeccccCCccCCCcCCCCCCCCceeecCCCCCccccCCCCC--CCCcceEEecCCcchhccccccCCCCCCCccEE
Q 002284 752 LKRLVIYGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFTEDGLF--PTNLHSLEIDGMKIWKSLMQLGGFHRYTSLRRL 829 (943)
Q Consensus 752 L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~--~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L 829 (943)
|++|++++|......+..+....++..|++.++..+..++...+. ...++.|++++|....... .+...++|++|
T Consensus 106 L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~---~~f~~~~L~~l 182 (350)
T 4ay9_X 106 LQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHN---SAFNGTQLDEL 182 (350)
T ss_dssp CCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECT---TSSTTEEEEEE
T ss_pred cccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCCh---hhccccchhHH
Confidence 999999998865544445666778888999888888888876432 2568899999987654332 33456789999
Q ss_pred EecCCCCcCcccCcccccccCCCCCCccEEEeecCCCCcccccccCCCCCCeEeecCCCCCccCCCCCCCCccceEeecC
Q 002284 830 AISGCDEDMVSFPLEDIRLGTTLPACLTQLEIFNFPNLERLSSSICDQNLTSLKLTNCPKLKYFPEKGLPASLLRLEIKK 909 (943)
Q Consensus 830 ~l~~c~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~C~~L~~~~~~~l~~sL~~L~i~~ 909 (943)
++++ ++.++.++.+.. ..+++|++|+++++ +++.+|.. .+.+|++|.+.+|+.++.+|...-.++|+.+++.+
T Consensus 183 ~l~~-~n~l~~i~~~~f----~~l~~L~~LdLs~N-~l~~lp~~-~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 183 NLSD-NNNLEELPNDVF----HGASGPVILDISRT-RIHSLPSY-GLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp ECTT-CTTCCCCCTTTT----TTEECCSEEECTTS-CCCCCCSS-SCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred hhcc-CCcccCCCHHHh----ccCcccchhhcCCC-CcCccChh-hhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 9998 588888887543 35788999999986 79999876 79999999999999999998755568899998865
No 90
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.62 E-value=7.5e-16 Score=162.90 Aligned_cols=195 Identities=17% Similarity=0.203 Sum_probs=146.0
Q ss_pred ccccccccEEeecccCCCCCCcchhccchhhhccCcccEEEecCccccccCccccCCCCCceeecCCCcccccchhhhhc
Q 002284 55 LYDIQHLRTLLPVTLLSSRPGYLARSILPRLLKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKL 134 (943)
Q Consensus 55 ~~~~~~Lr~L~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L 134 (943)
..++++|++|.+.++. + ..++ ++..+++|++|++++|.+..++. +..+++|++|++++|.++.+| .++.+
T Consensus 37 ~~~l~~L~~L~l~~~~------i-~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l 106 (308)
T 1h6u_A 37 QADLDGITTLSAFGTG------V-TTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGL 106 (308)
T ss_dssp HHHHHTCCEEECTTSC------C-CCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTC
T ss_pred HHHcCCcCEEEeeCCC------c-cCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCC
Confidence 3467788888775542 2 2343 56689999999999999988876 899999999999999999886 68899
Q ss_pred cccceeecCCCcccccccHHHhccccCceEEcCCCCCCccccccccccccccccCceEeccCCCCCcccccCcccccCce
Q 002284 135 YNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTL 214 (943)
Q Consensus 135 ~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l~~n~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l 214 (943)
++|++|++++|. +..+|. +..+++|++|++++|. +..++. ++.+++|+.|+...+
T Consensus 107 ~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n--------------------- 161 (308)
T 1h6u_A 107 QSIKTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSIGNA--------------------- 161 (308)
T ss_dssp TTCCEEECTTSC-CCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSS---------------------
T ss_pred CCCCEEECCCCC-CCCchh-hcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEccCC---------------------
Confidence 999999999987 444553 8899999999999998 666654 777777777732211
Q ss_pred eecccccccCccchhhcccCCCCCCCeEEEEeecCCCCCCchhhhhHHhhhccCCCCCCcceEEEEeeCCCCCCcccCCC
Q 002284 215 NISKLENVKYVGDAMEAQLDGKKNLKVLMLEWTRSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGYS 294 (943)
Q Consensus 215 ~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~ 294 (943)
.+.. +.. +..+++|+.|++++|.++... .+..+++|+.|+++++....++. + .
T Consensus 162 ---~l~~-------~~~-l~~l~~L~~L~l~~n~l~~~~-------------~l~~l~~L~~L~L~~N~l~~~~~-l--~ 214 (308)
T 1h6u_A 162 ---QVSD-------LTP-LANLSKLTTLKADDNKISDIS-------------PLASLPNLIEVHLKNNQISDVSP-L--A 214 (308)
T ss_dssp ---CCCC-------CGG-GTTCTTCCEEECCSSCCCCCG-------------GGGGCTTCCEEECTTSCCCBCGG-G--T
T ss_pred ---cCCC-------Chh-hcCCCCCCEEECCCCccCcCh-------------hhcCCCCCCEEEccCCccCcccc-c--c
Confidence 1110 111 567788899999888875321 25567889999999988887774 3 3
Q ss_pred CcCCeeEEEEeCCCCCC
Q 002284 295 LFSNLVTLKFQDCSMCT 311 (943)
Q Consensus 295 ~l~~L~~L~L~~n~~~~ 311 (943)
.+++|++|++++|.+.+
T Consensus 215 ~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 215 NTSNLFIVTLTNQTITN 231 (308)
T ss_dssp TCTTCCEEEEEEEEEEC
T ss_pred CCCCCCEEEccCCeeec
Confidence 48999999999998854
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.61 E-value=6.1e-16 Score=166.88 Aligned_cols=247 Identities=15% Similarity=0.167 Sum_probs=118.2
Q ss_pred eceEEEecCCCcCccchhccCC--CCcCeeeccCCCCCcccCCCCCCCCccEEEEecCCCCCc-CccccccCCCCCccEE
Q 002284 518 LEHLELINCQDLEKLPKSLLSL--SSLTEMRIHNCSSLVSFPEAVLPSQLRVISIWDSGALKF-LPEAWMLDNNSSLEIL 594 (943)
Q Consensus 518 L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~L~~n~~l~~~~~~~~~~~L~~L~l~~~~~l~~-~~~~~~~~~l~~L~~L 594 (943)
++.++++++... +..+..+ ++++.|++++|......+....+++|++|++++|..... ++.. +..+++|++|
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~--~~~~~~L~~L 123 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGI--LSQCSKLQNL 123 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHH--HTTBCCCSEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHH--HhhCCCCCEE
Confidence 455555555332 3333444 556666666665444333333356666666666653222 3333 3466777777
Q ss_pred EeecCCCcccccC-cCCCCCCceEEeccCcCccccccccCcccccccCCccceeeeecCCCcccccchhhHHHHhhhhhc
Q 002284 595 DIRHCHLLTYIAG-VQLPPSLKQLEIYNCDNLRTLTAEEGIHSSRRHTSLLECLEIHSCPSLTCLISKNELRAALDYLVV 673 (943)
Q Consensus 595 ~l~~n~~~~~~~~-~~~~~~L~~L~l~~~~~L~~l~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~ 673 (943)
++++|.+....+. ....++|++|++++|..++... ....+..++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~----l~~~~~~~~------------------------------- 168 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFA----LQTLLSSCS------------------------------- 168 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHH----HHHHHHHCT-------------------------------
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHH----HHHHHhcCC-------------------------------
Confidence 7777764433222 1234556666666664443210 001112233
Q ss_pred CCCcccccEEEeecCCCchh--hHhhhcccc-cccEEEeeccC--Cc-ccccccccCCCCccEEeccCCCCC-cccCcCC
Q 002284 674 GNLPQALKFLSIWHCSKLES--IVERLDNKI-SLEVIEIVSCE--NL-KMLPHGLHKLWHLQEIDIQDCENL-VSFPEGG 746 (943)
Q Consensus 674 ~~lp~~L~~L~l~~~~~l~~--~~~~~~~l~-~L~~L~l~~~~--~~-~~~p~~~~~l~~L~~L~l~~~~~l-~~~p~~~ 746 (943)
+|++|++++|..++. ++..+..++ +|++|++++|. .. +.+|..+.++++|++|++++|..+ ...+..+
T Consensus 169 -----~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l 243 (336)
T 2ast_B 169 -----RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF 243 (336)
T ss_dssp -----TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG
T ss_pred -----CCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHH
Confidence 455555555522221 344455555 55555555552 22 334444555666666666666522 3344444
Q ss_pred ccccccceeeeccccCCc-cCCCcCCCCCCCCceeecCCCCCccccCCCC-CC-CCcceEEecCCcchhcc
Q 002284 747 LLSAKLKRLVIYGCKKLE-ALPEGMHNLSSLQYLTIGGVPSLLCFTEDGL-FP-TNLHSLEIDGMKIWKSL 814 (943)
Q Consensus 747 ~~l~~L~~L~l~~~~~l~-~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~-~~-~~L~~L~l~~c~~l~~~ 814 (943)
..+++|++|++++|.... .....+..+++|++|++++| ++.... .+ .+|+.|++++|......
T Consensus 244 ~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-----i~~~~~~~l~~~l~~L~l~~n~l~~~~ 309 (336)
T 2ast_B 244 FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-----VPDGTLQLLKEALPHLQINCSHFTTIA 309 (336)
T ss_dssp GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-----SCTTCHHHHHHHSTTSEESCCCSCCTT
T ss_pred hCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-----cCHHHHHHHHhhCcceEEecccCcccc
Confidence 555566666666654111 10113455666666666665 222211 01 33555666555544433
No 92
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.59 E-value=3.1e-16 Score=170.41 Aligned_cols=104 Identities=13% Similarity=0.086 Sum_probs=79.1
Q ss_pred CCCCcchhccchhhhccCcccEEEecCccccccC-----ccccCCC-CCceeecCCCccccc-chhhhhc-----cccce
Q 002284 72 SRPGYLARSILPRLLKLQRLRVFSLRGYLISEVP-----DSIGDLS-YLRYLNLSGTQIRTL-PESVNKL-----YNLHT 139 (943)
Q Consensus 72 l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~lp-----~~~~~l~-~L~~L~Ls~n~i~~l-p~~i~~L-----~~L~~ 139 (943)
+++|.+++.+|..+...++|++|||++|.++..+ ..+.+++ +|++|+|++|.|... +..+..+ ++|++
T Consensus 5 ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~ 84 (362)
T 3goz_A 5 LTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTS 84 (362)
T ss_dssp CCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCE
T ss_pred cccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccE
Confidence 3456666666554446667999999999988875 6678888 899999999999877 5677776 89999
Q ss_pred eecCCCcccccccHHHhcc-----ccCceEEcCCCCCCcccc
Q 002284 140 LLLEGCRELKKKCADMGNL-----IKLHHLNNSNTDSLEEMP 176 (943)
Q Consensus 140 L~L~~n~~~~~~p~~~~~L-----~~L~~L~l~~n~~~~~~p 176 (943)
|++++|.+....+..+... ++|++|++++|. ++..+
T Consensus 85 L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~ 125 (362)
T 3goz_A 85 LNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKS 125 (362)
T ss_dssp EECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSC
T ss_pred EECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHH
Confidence 9999997655666555443 899999999998 44443
No 93
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.59 E-value=1e-16 Score=176.37 Aligned_cols=90 Identities=21% Similarity=0.215 Sum_probs=54.0
Q ss_pred cchhhhccCcccEEEecCccccc-----cCccccCCCCCceeecCCCccc----ccchhh-------hhccccceeecCC
Q 002284 81 ILPRLLKLQRLRVFSLRGYLISE-----VPDSIGDLSYLRYLNLSGTQIR----TLPESV-------NKLYNLHTLLLEG 144 (943)
Q Consensus 81 ~~~~~~~l~~L~~L~L~~n~i~~-----lp~~~~~l~~L~~L~Ls~n~i~----~lp~~i-------~~L~~L~~L~L~~ 144 (943)
++..+..+++|++|+|++|.++. ++..+..+++|++|+|++|.+. .+|..+ ..+++|++|+|++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 34444466667777777766554 2334556667777777766444 223333 4666777777777
Q ss_pred Ccccc----cccHHHhccccCceEEcCCCC
Q 002284 145 CRELK----KKCADMGNLIKLHHLNNSNTD 170 (943)
Q Consensus 145 n~~~~----~~p~~~~~L~~L~~L~l~~n~ 170 (943)
|.+.. .+|..+.++++|++|++++|.
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 133 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNG 133 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCC
Confidence 65443 356666667777777777766
No 94
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.56 E-value=5.9e-15 Score=154.46 Aligned_cols=96 Identities=23% Similarity=0.322 Sum_probs=73.1
Q ss_pred ccCcccEEEecCccccccCccccCCCCCceeecCCCcccccchhhhhccccceeecCCCcccccccHHHhccccCceEEc
Q 002284 87 KLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNN 166 (943)
Q Consensus 87 ~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l 166 (943)
.+++|++|++++|.+..+| .+..+++|++|++++|+++.++. ++++++|++|++++|. +..+| .++.+++|++|++
T Consensus 44 ~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L 119 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLS-SLKDLKKLKSLSL 119 (291)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGG-GGTTCTTCCEEEC
T ss_pred hcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc-CCCCh-hhccCCCCCEEEC
Confidence 7888889999988888886 48888899999999998888866 8888999999999886 44444 4888888999999
Q ss_pred CCCCCCcccccccccccccccc
Q 002284 167 SNTDSLEEMPLGIGKLTCLLTL 188 (943)
Q Consensus 167 ~~n~~~~~~p~~~~~L~~L~~L 188 (943)
++|. +..++ .++.+++|+.|
T Consensus 120 ~~n~-i~~~~-~l~~l~~L~~L 139 (291)
T 1h6t_A 120 EHNG-ISDIN-GLVHLPQLESL 139 (291)
T ss_dssp TTSC-CCCCG-GGGGCTTCCEE
T ss_pred CCCc-CCCCh-hhcCCCCCCEE
Confidence 8887 44442 34444444443
No 95
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.55 E-value=7.9e-16 Score=167.25 Aligned_cols=59 Identities=7% Similarity=0.033 Sum_probs=27.2
Q ss_pred ccccEEEeecCCCch----hhHhhhcccc-cccEEEeeccCCccccccc----ccCC-CCccEEeccCC
Q 002284 678 QALKFLSIWHCSKLE----SIVERLDNKI-SLEVIEIVSCENLKMLPHG----LHKL-WHLQEIDIQDC 736 (943)
Q Consensus 678 ~~L~~L~l~~~~~l~----~~~~~~~~l~-~L~~L~l~~~~~~~~~p~~----~~~l-~~L~~L~l~~~ 736 (943)
++|++|++++|.... .++..+...+ +|++|++++|.+.+..+.. +... ++|++|++++|
T Consensus 138 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N 206 (362)
T 3goz_A 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSAN 206 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred CceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCC
Confidence 345555555543331 3333333333 5555555555544433322 2223 35666666655
No 96
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.55 E-value=6.9e-16 Score=169.64 Aligned_cols=129 Identities=13% Similarity=0.118 Sum_probs=93.1
Q ss_pred cccccccccEEeecccCCCCCCcchhccchh----hhccCcccEEEecCccccc----cCcc-------ccCCCCCceee
Q 002284 54 DLYDIQHLRTLLPVTLLSSRPGYLARSILPR----LLKLQRLRVFSLRGYLISE----VPDS-------IGDLSYLRYLN 118 (943)
Q Consensus 54 ~~~~~~~Lr~L~~~~~~~l~~~~~~~~~~~~----~~~l~~L~~L~L~~n~i~~----lp~~-------~~~l~~L~~L~ 118 (943)
.+..+++|++|.+.+ |.+....+.. +..+++|++|+|++|.+.. +|.. +..+++|++|+
T Consensus 27 ~l~~~~~L~~L~L~~------n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~ 100 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSG------NTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR 100 (386)
T ss_dssp HHHHCSCCCEEECTT------SEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred HHhcCCCccEEECCC------CCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence 455678899997654 4555543333 4489999999999986543 3434 37899999999
Q ss_pred cCCCcccc-----cchhhhhccccceeecCCCcccccccH----HHhcc---------ccCceEEcCCCCCC-cccc---
Q 002284 119 LSGTQIRT-----LPESVNKLYNLHTLLLEGCRELKKKCA----DMGNL---------IKLHHLNNSNTDSL-EEMP--- 176 (943)
Q Consensus 119 Ls~n~i~~-----lp~~i~~L~~L~~L~L~~n~~~~~~p~----~~~~L---------~~L~~L~l~~n~~~-~~~p--- 176 (943)
|++|.+.. +|..+..+++|++|+|++|.+....+. .+..+ ++|++|++++|.+. ..+|
T Consensus 101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 180 (386)
T 2ca6_A 101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWA 180 (386)
T ss_dssp CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHH
Confidence 99999986 788899999999999999976443333 34445 89999999999843 2444
Q ss_pred cccccccccccc
Q 002284 177 LGIGKLTCLLTL 188 (943)
Q Consensus 177 ~~~~~L~~L~~L 188 (943)
..+..+++|++|
T Consensus 181 ~~l~~~~~L~~L 192 (386)
T 2ca6_A 181 KTFQSHRLLHTV 192 (386)
T ss_dssp HHHHHCTTCCEE
T ss_pred HHHHhCCCcCEE
Confidence 235555566555
No 97
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.54 E-value=9.1e-14 Score=142.33 Aligned_cols=155 Identities=15% Similarity=0.122 Sum_probs=115.9
Q ss_pred CcccccEEEeecCCCchhhHhhhcccccccEEEeeccCCcccccccccCCCCccEEeccCCCCCcccC-cCCccccccce
Q 002284 676 LPQALKFLSIWHCSKLESIVERLDNKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFP-EGGLLSAKLKR 754 (943)
Q Consensus 676 lp~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~p-~~~~~l~~L~~ 754 (943)
+|+.++.|++++|...+..+..+.++++|++|++++|.+.+..|..+..+++|++|++++|.. +.+| ..+..+++|++
T Consensus 33 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~ 111 (251)
T 3m19_A 33 IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-ASLPLGVFDHLTQLDK 111 (251)
T ss_dssp CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCE
T ss_pred CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcc-cccChhHhcccCCCCE
Confidence 346788888888776666666788888889999988888887777788888899999988854 4444 44567888889
Q ss_pred eeeccccCCccCCCcCCCCCCCCceeecCCCCCccccCC-CCCCCCcceEEecCCcchhccccccCCCCCCCccEEEecC
Q 002284 755 LVIYGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFTED-GLFPTNLHSLEIDGMKIWKSLMQLGGFHRYTSLRRLAISG 833 (943)
Q Consensus 755 L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 833 (943)
|++++|...+..+..+..+++|++|++++|. +..++.. +..+++|++|++++|....... ..+..+++|++|++++
T Consensus 112 L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~l~~ 188 (251)
T 3m19_A 112 LYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAFDKLTNLQTLSLSTNQLQSVPH--GAFDRLGKLQTITLFG 188 (251)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCT--TTTTTCTTCCEEECCS
T ss_pred EEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHcCcCcCCCEEECCCCcCCccCH--HHHhCCCCCCEEEeeC
Confidence 9998887554444456888888888888875 5555553 4456888888888887654333 2567788888888887
Q ss_pred C
Q 002284 834 C 834 (943)
Q Consensus 834 c 834 (943)
+
T Consensus 189 N 189 (251)
T 3m19_A 189 N 189 (251)
T ss_dssp C
T ss_pred C
Confidence 3
No 98
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.51 E-value=7.7e-14 Score=139.23 Aligned_cols=83 Identities=17% Similarity=0.275 Sum_probs=59.2
Q ss_pred cEEEecCccccccCccccCCCCCceeecCCCcccccch-hhhhccccceeecCCCcccccccHHHhccccCceEEcCCCC
Q 002284 92 RVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPE-SVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNTD 170 (943)
Q Consensus 92 ~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l~~n~ 170 (943)
+.++++++.++.+|..+. ++|++|++++|+|+.+|. .|..+++|++|+|++|.+.+..|..|.++++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 567777777777776654 577777777777777753 67777777777777776555556777777777777777777
Q ss_pred CCccccc
Q 002284 171 SLEEMPL 177 (943)
Q Consensus 171 ~~~~~p~ 177 (943)
+..+|.
T Consensus 92 -l~~l~~ 97 (220)
T 2v9t_B 92 -ITELPK 97 (220)
T ss_dssp -CCCCCT
T ss_pred -CCccCH
Confidence 444443
No 99
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.50 E-value=1.1e-14 Score=149.72 Aligned_cols=167 Identities=20% Similarity=0.245 Sum_probs=93.2
Q ss_pred ccCcccEEEecCccccccCccccCCCCCceeecCCCcccccchhhhhccccceeecCCCcccccccHHHhccccCceEEc
Q 002284 87 KLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNN 166 (943)
Q Consensus 87 ~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l 166 (943)
.+.++..++++++.++.++ .+..+++|++|++++|.|+.+| .++.+++|++|++++|. +..+|. ++++++|++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEEC
Confidence 3455555566666666555 4566666666666666666665 56666666666666664 333333 666666666666
Q ss_pred CCCCCCccccccccccccccccCceEeccCCCCCcccccCcccccCceeecccccccCccchhhcccCCCCCCCeEEEEe
Q 002284 167 SNTDSLEEMPLGIGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGKKNLKVLMLEW 246 (943)
Q Consensus 167 ~~n~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~ 246 (943)
++|. +..+|.... ++|+.|++++
T Consensus 93 ~~N~-l~~l~~~~~--------------------------------------------------------~~L~~L~L~~ 115 (263)
T 1xeu_A 93 NRNR-LKNLNGIPS--------------------------------------------------------ACLSRLFLDN 115 (263)
T ss_dssp CSSC-CSCCTTCCC--------------------------------------------------------SSCCEEECCS
T ss_pred CCCc-cCCcCcccc--------------------------------------------------------CcccEEEccC
Confidence 6665 333332111 2233333333
Q ss_pred ecCCCCCCchhhhhHHhhhccCCCCCCcceEEEEeeCCCCCCcccCCCCcCCeeEEEEeCCCCCCCCCCCCCCCCCCeeE
Q 002284 247 TRSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGYSLFSNLVTLKFQDCSMCTSMPSVGQLPSLKHLE 326 (943)
Q Consensus 247 n~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~l~~L~~L~ 326 (943)
|.++. ++.+..+++|+.|+++++....+| .+. .+++|++|++++|.+.+. +.+..+++|+.|+
T Consensus 116 N~l~~-------------~~~l~~l~~L~~L~Ls~N~i~~~~-~l~--~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~ 178 (263)
T 1xeu_A 116 NELRD-------------TDSLIHLKNLEILSIRNNKLKSIV-MLG--FLSKLEVLDLHGNEITNT-GGLTRLKKVNWID 178 (263)
T ss_dssp SCCSB-------------SGGGTTCTTCCEEECTTSCCCBCG-GGG--GCTTCCEEECTTSCCCBC-TTSTTCCCCCEEE
T ss_pred CccCC-------------ChhhcCcccccEEECCCCcCCCCh-HHc--cCCCCCEEECCCCcCcch-HHhccCCCCCEEe
Confidence 33321 012223334444444444444444 222 277888888888888665 6677788888888
Q ss_pred EecCc
Q 002284 327 VRGMS 331 (943)
Q Consensus 327 L~~~~ 331 (943)
+++|+
T Consensus 179 l~~N~ 183 (263)
T 1xeu_A 179 LTGQK 183 (263)
T ss_dssp EEEEE
T ss_pred CCCCc
Confidence 88876
No 100
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.50 E-value=2.4e-14 Score=140.50 Aligned_cols=95 Identities=17% Similarity=0.247 Sum_probs=69.7
Q ss_pred hccCcccEEEecCccccccCccccCCCCCceeecCCCcccccchhhhhccccceeecCCCcccccccHHHhccccCceEE
Q 002284 86 LKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLN 165 (943)
Q Consensus 86 ~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~ 165 (943)
..+++|++|++++|.++.+| .+..+++|++|++++|.+..++ .+..+++|++|++++|.+.+..|..|+.+++|++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 36778888888888888777 6788888888888888776664 677788888888888876666677788888888888
Q ss_pred cCCCCCCcccccccccc
Q 002284 166 NSNTDSLEEMPLGIGKL 182 (943)
Q Consensus 166 l~~n~~~~~~p~~~~~L 182 (943)
+++|.+....|..++.+
T Consensus 119 Ls~n~i~~~~~~~l~~l 135 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTL 135 (197)
T ss_dssp CCSSBCBGGGHHHHTTC
T ss_pred ecCCccCcHhHHHHhhC
Confidence 88877333333333333
No 101
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.50 E-value=1.5e-13 Score=136.20 Aligned_cols=77 Identities=23% Similarity=0.299 Sum_probs=45.9
Q ss_pred cEEEecCccccccCccccCCCCCceeecCCCcccccch-hhhhccccceeecCCCcccccccHHHhccccCceEEcCCCC
Q 002284 92 RVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPE-SVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNTD 170 (943)
Q Consensus 92 ~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l~~n~ 170 (943)
+.++++++.++.+|..+. ++|++|++++|+++.+|. .|+.+++|++|++++|.+.+..+..|..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGIP--AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCCC--CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 355666666666665442 466666666666666643 45666666666666665333333335666666666666665
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.48 E-value=3.6e-14 Score=162.94 Aligned_cols=97 Identities=23% Similarity=0.315 Sum_probs=69.2
Q ss_pred hccCcccEEEecCccccccCccccCCCCCceeecCCCcccccchhhhhccccceeecCCCcccccccHHHhccccCceEE
Q 002284 86 LKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLN 165 (943)
Q Consensus 86 ~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~ 165 (943)
..+++|+.|++++|.+..+| .|..+++|++|+|++|.|..+|. ++.+++|++|+|++|. +..+| .+..+++|++|+
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTTCTTCCEEE
T ss_pred hcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC-CCCCh-hhccCCCCCEEE
Confidence 36788888888888887776 47788888888888888887765 7888888888888875 44444 677888888888
Q ss_pred cCCCCCCcccccccccccccccc
Q 002284 166 NSNTDSLEEMPLGIGKLTCLLTL 188 (943)
Q Consensus 166 l~~n~~~~~~p~~~~~L~~L~~L 188 (943)
+++|. +..++ .++.+++|+.|
T Consensus 116 Ls~N~-l~~l~-~l~~l~~L~~L 136 (605)
T 1m9s_A 116 LEHNG-ISDIN-GLVHLPQLESL 136 (605)
T ss_dssp CTTSC-CCCCG-GGGGCTTCSEE
T ss_pred ecCCC-CCCCc-cccCCCccCEE
Confidence 88887 44432 24444444444
No 103
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.48 E-value=4.7e-14 Score=159.95 Aligned_cols=178 Identities=16% Similarity=0.133 Sum_probs=118.2
Q ss_pred cccEEEecCccccccCccccCCCCCceeecCCCcccccchhhhhccccceeecCCCcccccccHHHhccccCceEEcCCC
Q 002284 90 RLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNT 169 (943)
Q Consensus 90 ~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l~~n 169 (943)
+|++|+|++|.++.+|..+. ++|++|+|++|.|+.+| +.+++|++|++++|.+ ..+|. +.+ +|++|++++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l-~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRL-STLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCC-SCCCC-CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCC-CCcch-hhc--CCCEEECCCC
Confidence 88899999888888887664 78899999999888888 4578889999998864 44776 665 8899999988
Q ss_pred CCCccccccccccccccccCceEeccCCCCCcccccCcccccCceeecccccccCccchhhcccCCCCCCCeEEEEeecC
Q 002284 170 DSLEEMPLGIGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENVKYVGDAMEAQLDGKKNLKVLMLEWTRS 249 (943)
Q Consensus 170 ~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~ 249 (943)
. +..+|. .+++|+.|+...+ .+.. ++. .+++|+.|++++|.+
T Consensus 131 ~-l~~lp~---~l~~L~~L~Ls~N------------------------~l~~-------lp~---~l~~L~~L~Ls~N~L 172 (571)
T 3cvr_A 131 Q-LTMLPE---LPALLEYINADNN------------------------QLTM-------LPE---LPTSLEVLSVRNNQL 172 (571)
T ss_dssp C-CSCCCC---CCTTCCEEECCSS------------------------CCSC-------CCC---CCTTCCEEECCSSCC
T ss_pred c-CCCCCC---cCccccEEeCCCC------------------------ccCc-------CCC---cCCCcCEEECCCCCC
Confidence 8 555776 4566665522111 1110 000 245677777777776
Q ss_pred CCCCCchhhhhHHhhhccCCCCCCcceEEEEeeCCCCCCcccCCCCcCCe-------eEEEEeCCCCCCCCCCCCCCCCC
Q 002284 250 TNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGYSLFSNL-------VTLKFQDCSMCTSMPSVGQLPSL 322 (943)
Q Consensus 250 ~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L-------~~L~L~~n~~~~~~~~~~~l~~L 322 (943)
+.++. +. ++|+.|++++|....+|. +. .+| +.|++++|.+....+.+..+++|
T Consensus 173 ~~lp~-------------l~--~~L~~L~Ls~N~L~~lp~-~~----~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L 232 (571)
T 3cvr_A 173 TFLPE-------------LP--ESLEALDVSTNLLESLPA-VP----VRNHHSEETEIFFRCRENRITHIPENILSLDPT 232 (571)
T ss_dssp SCCCC-------------CC--TTCCEEECCSSCCSSCCC-CC------------CCEEEECCSSCCCCCCGGGGGSCTT
T ss_pred CCcch-------------hh--CCCCEEECcCCCCCchhh-HH----HhhhcccccceEEecCCCcceecCHHHhcCCCC
Confidence 53211 22 577777777777777766 32 145 77777777776433355567777
Q ss_pred CeeEEecCcCce
Q 002284 323 KHLEVRGMSRVK 334 (943)
Q Consensus 323 ~~L~L~~~~~~~ 334 (943)
+.|++++|+..+
T Consensus 233 ~~L~L~~N~l~~ 244 (571)
T 3cvr_A 233 CTIILEDNPLSS 244 (571)
T ss_dssp EEEECCSSSCCH
T ss_pred CEEEeeCCcCCC
Confidence 777777776443
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.47 E-value=1.6e-13 Score=143.53 Aligned_cols=120 Identities=19% Similarity=0.307 Sum_probs=94.0
Q ss_pred ccccccccEEeecccCCCCCCcchhccchhhhccCcccEEEecCccccccCccccCCCCCceeecCCCcccccchhhhhc
Q 002284 55 LYDIQHLRTLLPVTLLSSRPGYLARSILPRLLKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKL 134 (943)
Q Consensus 55 ~~~~~~Lr~L~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L 134 (943)
..++++|+.|.+.++ .+ ..+ +++..+++|++|++++|.++.++. +..+++|++|++++|.++.+|. ++.+
T Consensus 42 ~~~l~~L~~L~l~~~------~i-~~~-~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l 111 (291)
T 1h6t_A 42 QNELNSIDQIIANNS------DI-KSV-QGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDL 111 (291)
T ss_dssp HHHHHTCCEEECTTS------CC-CCC-TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTC
T ss_pred hhhcCcccEEEccCC------Cc-ccC-hhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccC
Confidence 446788898877554 22 233 346689999999999999999876 9999999999999999999864 8999
Q ss_pred cccceeecCCCcccccccHHHhccccCceEEcCCCCCCcccccccccccccccc
Q 002284 135 YNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLLTL 188 (943)
Q Consensus 135 ~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l~~n~~~~~~p~~~~~L~~L~~L 188 (943)
++|++|++++|.+ ..+ ..+..+++|++|++++|. +..+ ..++.+++|++|
T Consensus 112 ~~L~~L~L~~n~i-~~~-~~l~~l~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L 161 (291)
T 1h6t_A 112 KKLKSLSLEHNGI-SDI-NGLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTL 161 (291)
T ss_dssp TTCCEEECTTSCC-CCC-GGGGGCTTCCEEECCSSC-CCCC-GGGGGCTTCSEE
T ss_pred CCCCEEECCCCcC-CCC-hhhcCCCCCCEEEccCCc-CCcc-hhhccCCCCCEE
Confidence 9999999999974 444 468999999999999998 5544 345555555555
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.47 E-value=1.3e-13 Score=156.37 Aligned_cols=91 Identities=29% Similarity=0.423 Sum_probs=47.8
Q ss_pred eeceEEEecCCCcCccchhccCCCCcCeeeccCCCCCcccCCCCCCCCccEEEEecCCCCCcCccccccCCCCCccEEEe
Q 002284 517 RLEHLELINCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFPEAVLPSQLRVISIWDSGALKFLPEAWMLDNNSSLEILDI 596 (943)
Q Consensus 517 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l 596 (943)
+|+.|++++|.+.+ +|..+ +++|++|++++|. ++.+| ..+++|++|++++|.. +.+|. +. . +|++|++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~-l~~ip--~~l~~L~~L~Ls~N~l-~~ip~-l~--~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNA-LISLP--ELPASLEYLDACDNRL-STLPE-LP--A--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSC-CSCCC--CCCTTCCEEECCSSCC-SCCCC-CC--T--TCCEEEC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCC-Ccccc--cccCCCCEEEccCCCC-CCcch-hh--c--CCCEEEC
Confidence 56666666664433 55433 2566666666664 33555 3456666666666653 33444 21 1 5666666
Q ss_pred ecCCCcccccCcCCCCCCceEEeccC
Q 002284 597 RHCHLLTYIAGVQLPPSLKQLEIYNC 622 (943)
Q Consensus 597 ~~n~~~~~~~~~~~~~~L~~L~l~~~ 622 (943)
++|.+.+ +|. .+++|+.|++++|
T Consensus 128 s~N~l~~-lp~--~l~~L~~L~Ls~N 150 (571)
T 3cvr_A 128 DNNQLTM-LPE--LPALLEYINADNN 150 (571)
T ss_dssp CSSCCSC-CCC--CCTTCCEEECCSS
T ss_pred CCCcCCC-CCC--cCccccEEeCCCC
Confidence 6665433 333 3444555555444
No 106
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.45 E-value=3.7e-13 Score=135.25 Aligned_cols=77 Identities=23% Similarity=0.240 Sum_probs=47.9
Q ss_pred ccEEEecCccccccCccccCCCCCceeecCCCccccc-chhhhhccccceeecCCCccccccc-HHHhccccCceEEcCC
Q 002284 91 LRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTL-PESVNKLYNLHTLLLEGCRELKKKC-ADMGNLIKLHHLNNSN 168 (943)
Q Consensus 91 L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~n~~~~~~p-~~~~~L~~L~~L~l~~ 168 (943)
-+.++.+++.++.+|..+. ++|++|+|++|.|+.+ |..|..+++|++|+|++|.+ ..+| ..|..+++|++|++++
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCC
Confidence 3456666666666665554 5666666666666666 45566666666666666653 3333 3356666666666666
Q ss_pred CC
Q 002284 169 TD 170 (943)
Q Consensus 169 n~ 170 (943)
|.
T Consensus 98 N~ 99 (229)
T 3e6j_A 98 NQ 99 (229)
T ss_dssp SC
T ss_pred Cc
Confidence 66
No 107
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.45 E-value=2.8e-13 Score=132.83 Aligned_cols=104 Identities=16% Similarity=0.108 Sum_probs=66.6
Q ss_pred cccEEEeecCCCchhhHhhhcccccccEEEeeccCCcccccccccCCCCccEEeccCCCCCcccCcCCccccccceeeec
Q 002284 679 ALKFLSIWHCSKLESIVERLDNKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVIY 758 (943)
Q Consensus 679 ~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~ 758 (943)
+|++|++++|......+..+..+++|++|++++|.+.+..|..+..+++|++|++++|..++.+| .+..+++|+.|+++
T Consensus 89 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~ 167 (197)
T 4ezg_A 89 NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQ 167 (197)
T ss_dssp TCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECT
T ss_pred CCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECC
Confidence 56666666655544455556666777777777777666666667777777777777775466665 45566677777777
Q ss_pred cccCCccCCCcCCCCCCCCceeecCCC
Q 002284 759 GCKKLEALPEGMHNLSSLQYLTIGGVP 785 (943)
Q Consensus 759 ~~~~l~~~p~~~~~l~~L~~L~l~~~~ 785 (943)
+|.. ..++ .+..+++|++|++++|+
T Consensus 168 ~n~i-~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 168 FDGV-HDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp TBCC-CCCT-TGGGCSSCCEEEECBC-
T ss_pred CCCC-cChH-HhccCCCCCEEEeeCcc
Confidence 7663 3343 55666677777776665
No 108
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.45 E-value=3.1e-13 Score=134.79 Aligned_cols=77 Identities=12% Similarity=0.171 Sum_probs=45.4
Q ss_pred cEEEecCccccccCccccCCCCCceeecCCCcccccc--hhhhhccccceeecCCCcccccccHHHhccccCceEEcCCC
Q 002284 92 RVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLP--ESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNT 169 (943)
Q Consensus 92 ~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp--~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l~~n 169 (943)
+++++++|.++.+|..+. ..+++|+|++|.|+.++ ..|+.+++|++|++++|.+.+..|..|+++++|++|++++|
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 356666666666665543 23466666666666652 23566666666666666544443445666666666666666
Q ss_pred C
Q 002284 170 D 170 (943)
Q Consensus 170 ~ 170 (943)
.
T Consensus 92 ~ 92 (220)
T 2v70_A 92 R 92 (220)
T ss_dssp C
T ss_pred c
Confidence 6
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.43 E-value=1.3e-13 Score=149.38 Aligned_cols=81 Identities=20% Similarity=0.090 Sum_probs=44.7
Q ss_pred cccEEEecCccccccCc-ccc-CCCCCceeecCCCcccccc-hhhhhccccceeecCCCcccccccHHHhccccCceEEc
Q 002284 90 RLRVFSLRGYLISEVPD-SIG-DLSYLRYLNLSGTQIRTLP-ESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNN 166 (943)
Q Consensus 90 ~L~~L~L~~n~i~~lp~-~~~-~l~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l 166 (943)
.+++|+|++|.++.++. .|. ++++|++|+|++|+|+.+| ..|.++++|++|+|++|.+....+..|..+++|++|++
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 119 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLL 119 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEEC
Confidence 35556666666655532 333 5666666666666666554 34556666666666665433333334555666666666
Q ss_pred CCCC
Q 002284 167 SNTD 170 (943)
Q Consensus 167 ~~n~ 170 (943)
++|.
T Consensus 120 ~~N~ 123 (361)
T 2xot_A 120 YNNH 123 (361)
T ss_dssp CSSC
T ss_pred CCCc
Confidence 6555
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.42 E-value=1.3e-13 Score=158.44 Aligned_cols=96 Identities=16% Similarity=0.240 Sum_probs=76.3
Q ss_pred ccCcccEEEecCccccccCccccCCCCCceeecCCCcccccchhhhhccccceeecCCCcccccccHHHhccccCceEEc
Q 002284 87 KLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNN 166 (943)
Q Consensus 87 ~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l 166 (943)
.+..+..+.+..+.+..++ .+..+.+|++|++++|.|..+| .++.+++|++|+|++|.+.+ +|. +..+++|++|++
T Consensus 19 ~l~~l~~l~l~~~~i~~~~-~~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~-~~~-l~~l~~L~~L~L 94 (605)
T 1m9s_A 19 AFAETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTD-IKP-LTNLKNLGWLFL 94 (605)
T ss_dssp HHHHHHHHHTTCSCTTSEE-CHHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCC-CGG-GGGCTTCCEEEC
T ss_pred HHHHHHHHhccCCCccccc-chhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCC-Chh-hccCCCCCEEEC
Confidence 4455666677777776653 3678999999999999999997 68999999999999997544 444 999999999999
Q ss_pred CCCCCCcccccccccccccccc
Q 002284 167 SNTDSLEEMPLGIGKLTCLLTL 188 (943)
Q Consensus 167 ~~n~~~~~~p~~~~~L~~L~~L 188 (943)
++|. +..+| .++.+++|+.|
T Consensus 95 s~N~-l~~l~-~l~~l~~L~~L 114 (605)
T 1m9s_A 95 DENK-IKDLS-SLKDLKKLKSL 114 (605)
T ss_dssp CSSC-CCCCT-TSTTCTTCCEE
T ss_pred cCCC-CCCCh-hhccCCCCCEE
Confidence 9998 55555 56667777666
No 111
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.37 E-value=7.7e-13 Score=123.14 Aligned_cols=126 Identities=17% Similarity=0.140 Sum_probs=102.9
Q ss_pred ccccccEEeecccCCCCCCcch-hccchhhhccCcccEEEecCccccccCccccCCCCCceeecCCCcccc-cchhhhhc
Q 002284 57 DIQHLRTLLPVTLLSSRPGYLA-RSILPRLLKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRT-LPESVNKL 134 (943)
Q Consensus 57 ~~~~Lr~L~~~~~~~l~~~~~~-~~~~~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~-lp~~i~~L 134 (943)
..++|+.|.+.+ |.+. +.+|..+..+++|++|++++|.++.+ ..++.+++|++|++++|.++. +|..++.+
T Consensus 15 ~~~~l~~L~l~~------n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l 87 (149)
T 2je0_A 15 TPSDVKELVLDN------SRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKC 87 (149)
T ss_dssp CGGGCSEEECTT------CBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHC
T ss_pred CCccCeEEEccC------CcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhC
Confidence 346788886644 3455 57777666999999999999999888 788999999999999999998 78888889
Q ss_pred cccceeecCCCccccc-ccHHHhccccCceEEcCCCCCCccccc----cccccccccccCc
Q 002284 135 YNLHTLLLEGCRELKK-KCADMGNLIKLHHLNNSNTDSLEEMPL----GIGKLTCLLTLCN 190 (943)
Q Consensus 135 ~~L~~L~L~~n~~~~~-~p~~~~~L~~L~~L~l~~n~~~~~~p~----~~~~L~~L~~L~~ 190 (943)
++|++|++++|.+.+. .|..++.+++|++|++++|. +..+|. .++.+++|+.|+.
T Consensus 88 ~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 88 PNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp TTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETT
T ss_pred CCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccC
Confidence 9999999999974442 23679999999999999998 666665 5888888888853
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.37 E-value=4.2e-12 Score=126.59 Aligned_cols=133 Identities=11% Similarity=0.105 Sum_probs=100.7
Q ss_pred CcccccEEEeecCCCchhhHhhhcccccccEEEeeccCCcccccccccCCCCccEEeccCCCCCcccCcC-Cccccccce
Q 002284 676 LPQALKFLSIWHCSKLESIVERLDNKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEG-GLLSAKLKR 754 (943)
Q Consensus 676 lp~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~-~~~l~~L~~ 754 (943)
+|+.++.|++++|...+..+..+..+++|+.|++++|.+.+..|..|.++++|++|+|++| .++.+|.. +..+++|+.
T Consensus 30 l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~ 108 (220)
T 2v9t_B 30 LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN-KITELPKSLFEGLFSLQL 108 (220)
T ss_dssp CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC-cCCccCHhHccCCCCCCE
Confidence 3467888888887655544556888888888898888888877888888888999999888 45566665 456888888
Q ss_pred eeeccccCCccCCCcCCCCCCCCceeecCCCCCccccCC-CCCCCCcceEEecCCcc
Q 002284 755 LVIYGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFTED-GLFPTNLHSLEIDGMKI 810 (943)
Q Consensus 755 L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~c~~ 810 (943)
|++++|...+..|..+..+++|++|++++|. +..++.+ +..+++|+.|++++|+.
T Consensus 109 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 109 LLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred EECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHHhCCCCCCEEEeCCCCc
Confidence 8888888776667788888888888888877 4444443 44457777777777764
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.36 E-value=4.7e-12 Score=126.22 Aligned_cols=135 Identities=12% Similarity=-0.071 Sum_probs=88.8
Q ss_pred cccccEEEeecCCCchhhH-hhhcccccccEEEeeccCCcccccccccCCCCccEEeccCCCCCcccCcCCcccccccee
Q 002284 677 PQALKFLSIWHCSKLESIV-ERLDNKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEGGLLSAKLKRL 755 (943)
Q Consensus 677 p~~L~~L~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L 755 (943)
|..+++|++++|...+..+ ..+..+++|++|++++|.+.+..+..|.++++|++|++++|...+..+..+..+++|++|
T Consensus 31 ~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 110 (220)
T 2v70_A 31 PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTL 110 (220)
T ss_dssp CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEE
T ss_pred CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEE
Confidence 3456777777765444323 336677777777777777776666677777777777777775433333345667777777
Q ss_pred eeccccCCccCCCcCCCCCCCCceeecCCCCCccccCCCCCCCCcceEEecCCcch
Q 002284 756 VIYGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFTEDGLFPTNLHSLEIDGMKIW 811 (943)
Q Consensus 756 ~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~l~~c~~l 811 (943)
++++|...+..|..+..+++|++|++++|......|..+..+++|++|++++|+..
T Consensus 111 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 111 MLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp ECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 77777766666677777777777777776644333444445566777777766643
No 114
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.36 E-value=1.3e-12 Score=124.45 Aligned_cols=127 Identities=24% Similarity=0.174 Sum_probs=97.7
Q ss_pred cccccEEeecccCCCCCCcch-hccchhhhccCcccEEEecCccccccCccccCCCCCceeecCCCcccc-cchhhhhcc
Q 002284 58 IQHLRTLLPVTLLSSRPGYLA-RSILPRLLKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRT-LPESVNKLY 135 (943)
Q Consensus 58 ~~~Lr~L~~~~~~~l~~~~~~-~~~~~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~-lp~~i~~L~ 135 (943)
.++|++|.+.++ .+. +.+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.+.. +|..++.++
T Consensus 23 ~~~L~~L~l~~n------~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 95 (168)
T 2ell_A 23 PAAVRELVLDNC------KSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLP 95 (168)
T ss_dssp TTSCSEEECCSC------BCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT
T ss_pred cccCCEEECCCC------CCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCC
Confidence 467788866443 444 46666656888899999998888887 778888899999999998887 677777888
Q ss_pred ccceeecCCCccccccc--HHHhccccCceEEcCCCCCCccccc----cccccccccccCceEe
Q 002284 136 NLHTLLLEGCRELKKKC--ADMGNLIKLHHLNNSNTDSLEEMPL----GIGKLTCLLTLCNFVV 193 (943)
Q Consensus 136 ~L~~L~L~~n~~~~~~p--~~~~~L~~L~~L~l~~n~~~~~~p~----~~~~L~~L~~L~~~~~ 193 (943)
+|++|++++|. +..+| ..++.+++|++|++++|. +..+|. .+..+++|+.|+...+
T Consensus 96 ~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 96 NLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp TCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred CCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCC
Confidence 99999999886 44444 678888899999998888 666665 5788888888865444
No 115
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.36 E-value=1.6e-14 Score=165.00 Aligned_cols=69 Identities=19% Similarity=0.028 Sum_probs=47.4
Q ss_pred cCCCCCceeecCCCcccccchhhhhccccceeecCCCcccccccHHHhccccCceEEcCCCCCCcccccccccccccccc
Q 002284 109 GDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLLTL 188 (943)
Q Consensus 109 ~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l~~n~~~~~~p~~~~~L~~L~~L 188 (943)
...++|+.|+|++|+++.||++|+++++|+.|++++|.....+|..+..+ ...+..|..++.+++|+.|
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~-----------~~~~~~~~~l~~l~~L~~L 414 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRAL-----------DPLLYEKETLQYFSTLKAV 414 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH-----------CTGGGHHHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhc-----------ccccCCHHHHHHHHhcccC
Confidence 67889999999999999999999999999999998764333333222111 1134445556666666655
No 116
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.35 E-value=2e-12 Score=128.07 Aligned_cols=147 Identities=16% Similarity=0.065 Sum_probs=99.6
Q ss_pred CcccccEEEeecCCCchhhHhhhcccccccEEEeeccCCcccccccccCCCCccEEeccCCCCCcccCcC-Cccccccce
Q 002284 676 LPQALKFLSIWHCSKLESIVERLDNKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEG-GLLSAKLKR 754 (943)
Q Consensus 676 lp~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~-~~~l~~L~~ 754 (943)
+++++++|++++|...+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|. ++.+|.. +..+++|++
T Consensus 26 ~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~ 104 (208)
T 2o6s_A 26 IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQLKE 104 (208)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCE
T ss_pred CCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc-CCccCHhHhcCccCCCE
Confidence 34678888888876554444456778888888888887776555566778888888888874 4455543 456778888
Q ss_pred eeeccccCCccCCCcCCCCCCCCceeecCCCCCccccCC-CCCCCCcceEEecCCcchhccccccCCCCCCCccEEEecC
Q 002284 755 LVIYGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFTED-GLFPTNLHSLEIDGMKIWKSLMQLGGFHRYTSLRRLAISG 833 (943)
Q Consensus 755 L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~ 833 (943)
|++++|...+..+..+..+++|++|++++|. +..++.. +..+++|++|++++|+. ...+++|++|+++.
T Consensus 105 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~---------~~~~~~l~~L~~~~ 174 (208)
T 2o6s_A 105 LALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPW---------DCTCPGIRYLSEWI 174 (208)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCB---------CCCTTTTHHHHHHH
T ss_pred EEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCe---------ecCCCCHHHHHHHH
Confidence 8888877554444456778888888888775 4445444 34467777777777753 23456667776666
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.35 E-value=2.5e-12 Score=132.18 Aligned_cols=96 Identities=24% Similarity=0.260 Sum_probs=53.2
Q ss_pred hccCcccEEEecCccccccCccccCCCCCceeecCCCcccccchhhhhccccceeecCCCcccccccHHHhccccCceEE
Q 002284 86 LKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLN 165 (943)
Q Consensus 86 ~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~ 165 (943)
..+++|++|++++|.++.+| .+..+++|++|+|++|.|+.+|. ++++++|++|++++|. +..+|. +.. ++|++|+
T Consensus 38 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~-l~~l~~-~~~-~~L~~L~ 112 (263)
T 1xeu_A 38 KELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNR-LKNLNG-IPS-ACLSRLF 112 (263)
T ss_dssp HHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSC-CSCCTT-CCC-SSCCEEE
T ss_pred hhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCc-cCCcCc-ccc-CcccEEE
Confidence 35566666666666666555 45566666666666666666654 5666666666666654 333332 222 5666666
Q ss_pred cCCCCCCcccccccccccccccc
Q 002284 166 NSNTDSLEEMPLGIGKLTCLLTL 188 (943)
Q Consensus 166 l~~n~~~~~~p~~~~~L~~L~~L 188 (943)
+++|. +..++ .++.+++|+.|
T Consensus 113 L~~N~-l~~~~-~l~~l~~L~~L 133 (263)
T 1xeu_A 113 LDNNE-LRDTD-SLIHLKNLEIL 133 (263)
T ss_dssp CCSSC-CSBSG-GGTTCTTCCEE
T ss_pred ccCCc-cCCCh-hhcCcccccEE
Confidence 66665 44443 35555555555
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.34 E-value=4.7e-14 Score=161.09 Aligned_cols=175 Identities=15% Similarity=0.083 Sum_probs=117.3
Q ss_pred hccCcccEEEecCccccccCccccCCCCCceeecCCCc-------------cc-ccchhhhhccccceee-cCCCccccc
Q 002284 86 LKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQ-------------IR-TLPESVNKLYNLHTLL-LEGCRELKK 150 (943)
Q Consensus 86 ~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~-------------i~-~lp~~i~~L~~L~~L~-L~~n~~~~~ 150 (943)
...++|+.|+|++|.++.+|+.|+++++|+.|++++|. +. .+|..++.+++|+.|+ ++.|. ...
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~-~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY-LDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHH-HHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcc-cch
Confidence 46899999999999999999999999999999998774 22 4467889999999998 66553 333
Q ss_pred ccH------HHhcc--ccCceEEcCCCCCCccccccccccccccccCceEeccCCCCCcccccCcccccCceeecccccc
Q 002284 151 KCA------DMGNL--IKLHHLNNSNTDSLEEMPLGIGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCGTLNISKLENV 222 (943)
Q Consensus 151 ~p~------~~~~L--~~L~~L~l~~n~~~~~~p~~~~~L~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~~l~~~~l~~~ 222 (943)
++. .+..+ ..|++|++++|. +..+|. ++.+++|+.|+...+ .+.
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~-l~~lp~-~~~l~~L~~L~Ls~N------------------------~l~-- 476 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKD-LTVLCH-LEQLLLVTHLDLSHN------------------------RLR-- 476 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSC-CSSCCC-GGGGTTCCEEECCSS------------------------CCC--
T ss_pred hhhhhhhcccccccCccCceEEEecCCC-CCCCcC-ccccccCcEeecCcc------------------------ccc--
Confidence 332 12222 268899999998 666775 777777766622111 111
Q ss_pred cCccchhhcccCCCCCCCeEEEEeecCCCCCCchhhhhHHhhhccCCCCCCcceEEEEeeCCCCCCcccCCCCcCCeeEE
Q 002284 223 KYVGDAMEAQLDGKKNLKVLMLEWTRSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGKKFPTWLGYSLFSNLVTL 302 (943)
Q Consensus 223 ~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L 302 (943)
.++..+..+++|+.|++++|.+ ..+| .+. .+++|++|
T Consensus 477 -----~lp~~~~~l~~L~~L~Ls~N~l-----------------------------------~~lp-~l~--~l~~L~~L 513 (567)
T 1dce_A 477 -----ALPPALAALRCLEVLQASDNAL-----------------------------------ENVD-GVA--NLPRLQEL 513 (567)
T ss_dssp -----CCCGGGGGCTTCCEEECCSSCC-----------------------------------CCCG-GGT--TCSSCCEE
T ss_pred -----ccchhhhcCCCCCEEECCCCCC-----------------------------------CCCc-ccC--CCCCCcEE
Confidence 1112244455555555555544 4455 333 27777777
Q ss_pred EEeCCCCCCCC-C-CCCCCCCCCeeEEecCcC
Q 002284 303 KFQDCSMCTSM-P-SVGQLPSLKHLEVRGMSR 332 (943)
Q Consensus 303 ~L~~n~~~~~~-~-~~~~l~~L~~L~L~~~~~ 332 (943)
++++|.+.+.. | .++.+++|+.|++++|+.
T Consensus 514 ~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l 545 (567)
T 1dce_A 514 LLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545 (567)
T ss_dssp ECCSSCCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred ECCCCCCCCCCCcHHHhcCCCCCEEEecCCcC
Confidence 77777777664 4 677777777787777763
No 119
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.31 E-value=3.1e-12 Score=122.68 Aligned_cols=130 Identities=18% Similarity=0.091 Sum_probs=106.1
Q ss_pred ccccccccccEEeecccCCCCCCcchhccchhhhccC-cccEEEecCccccccCccccCCCCCceeecCCCcccccchh-
Q 002284 53 EDLYDIQHLRTLLPVTLLSSRPGYLARSILPRLLKLQ-RLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPES- 130 (943)
Q Consensus 53 ~~~~~~~~Lr~L~~~~~~~l~~~~~~~~~~~~~~~l~-~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~- 130 (943)
..+.++++|+.|.+.++ .+. .+ +.+..+. +|++|++++|.++.+ ..|+.+++|++|+|++|.|+.+|..
T Consensus 13 ~~~~~~~~L~~L~l~~n------~l~-~i-~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~ 83 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGY------KIP-VI-ENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGL 83 (176)
T ss_dssp CEEECTTSCEEEECTTS------CCC-SC-CCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCH
T ss_pred HhcCCcCCceEEEeeCC------CCc-hh-HHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcch
Confidence 44567888999977554 333 44 4466544 999999999999988 6899999999999999999999754
Q ss_pred hhhccccceeecCCCcccccccH--HHhccccCceEEcCCCCCCcccccc----ccccccccccCceEe
Q 002284 131 VNKLYNLHTLLLEGCRELKKKCA--DMGNLIKLHHLNNSNTDSLEEMPLG----IGKLTCLLTLCNFVV 193 (943)
Q Consensus 131 i~~L~~L~~L~L~~n~~~~~~p~--~~~~L~~L~~L~l~~n~~~~~~p~~----~~~L~~L~~L~~~~~ 193 (943)
++.+++|++|++++|. ++.+|. .++.+++|++|++++|. +..+|.. ++.+++|+.|+...+
T Consensus 84 ~~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 84 DQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp HHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred hhcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcC
Confidence 4999999999999996 577776 79999999999999999 6778875 888999998865444
No 120
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.31 E-value=2.3e-12 Score=125.28 Aligned_cols=107 Identities=23% Similarity=0.311 Sum_probs=71.1
Q ss_pred ccchhhhccCcccEEEecCccccccCccccCCCCCceeecCCCcccccc-hhhhhccccceeecCCCcccccccHHHhcc
Q 002284 80 SILPRLLKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLP-ESVNKLYNLHTLLLEGCRELKKKCADMGNL 158 (943)
Q Consensus 80 ~~~~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L 158 (943)
.+|.+++ +.|++|++++|.++.+|..|.++++|++|+|++|.|+.++ ..|.++++|++|+|++|.+....|..|.++
T Consensus 24 ~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l 101 (193)
T 2wfh_A 24 VLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGL 101 (193)
T ss_dssp SCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTC
T ss_pred cCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCC
Confidence 4554443 4667777777777777767777777777777777777764 456777777777777776544445557777
Q ss_pred ccCceEEcCCCCCCcccccc-ccccccccccC
Q 002284 159 IKLHHLNNSNTDSLEEMPLG-IGKLTCLLTLC 189 (943)
Q Consensus 159 ~~L~~L~l~~n~~~~~~p~~-~~~L~~L~~L~ 189 (943)
++|++|++++|. +..+|.+ |..+++|+.|+
T Consensus 102 ~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~ 132 (193)
T 2wfh_A 102 KSLRLLSLHGND-ISVVPEGAFNDLSALSHLA 132 (193)
T ss_dssp TTCCEEECCSSC-CCBCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCC-CCeeChhhhhcCccccEEE
Confidence 777777777776 5555553 66666666663
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.30 E-value=3.1e-12 Score=151.03 Aligned_cols=149 Identities=19% Similarity=0.200 Sum_probs=95.7
Q ss_pred CceeEEEEEeccCccccccccccccccccEEeecccCCCCCCcchhccchhhh-ccCcccEEEecCccccccCccccCCC
Q 002284 34 RNLHHLSYIRGDYDGVKRFEDLYDIQHLRTLLPVTLLSSRPGYLARSILPRLL-KLQRLRVFSLRGYLISEVPDSIGDLS 112 (943)
Q Consensus 34 ~~~~~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~l~~~~~~~~~~~~~~-~l~~L~~L~L~~n~i~~lp~~~~~l~ 112 (943)
.+++++++..+...... .......+|+.+.+.... +..|.+ .++++.+ .++.|++|+|++|.+..+|..+..++
T Consensus 173 ~~~~~l~L~~n~~~~~~--~~~l~~l~Ls~~~i~~~~-~~~n~~--~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~ 247 (727)
T 4b8c_D 173 PLTPKIELFANGKDEAN--QALLQHKKLSQYSIDEDD-DIENRM--VMPKDSKYDDQLWHALDLSNLQIFNISANIFKYD 247 (727)
T ss_dssp ------------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCC
T ss_pred CccceEEeeCCCCCcch--hhHhhcCccCcccccCcc-ccccce--ecChhhhccCCCCcEEECCCCCCCCCChhhcCCC
Confidence 45788888666544321 223344455555443321 123322 2455555 99999999999999999998899999
Q ss_pred CCceeecCCCcccccchhhhhccccceeecCCCcccccccHHHhccccCceEEcCCCCCCccccccccccccccccC
Q 002284 113 YLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNTDSLEEMPLGIGKLTCLLTLC 189 (943)
Q Consensus 113 ~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l~~n~~~~~~p~~~~~L~~L~~L~ 189 (943)
+|++|+|++|.|+.+|..|++|++|++|+|++|. +..+|..|++|++|++|+|++|. ++.+|.+|+.+++|++|+
T Consensus 248 ~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~ 322 (727)
T 4b8c_D 248 FLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLG 322 (727)
T ss_dssp SCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECCSSC-CCCCCSSTTSCTTCCCEE
T ss_pred CCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECCCCC-CCccChhhhcCCCccEEe
Confidence 9999999999999999999999999999999997 45889999999999999999998 789999999999999884
No 122
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.30 E-value=1.2e-11 Score=124.32 Aligned_cols=130 Identities=19% Similarity=0.157 Sum_probs=67.2
Q ss_pred cccccEEEeecCCCchhhHhhhcccccccEEEeeccCCcccccccccCCCCccEEeccCCCCCcccCcC-Ccccccccee
Q 002284 677 PQALKFLSIWHCSKLESIVERLDNKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEG-GLLSAKLKRL 755 (943)
Q Consensus 677 p~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~-~~~l~~L~~L 755 (943)
|++|+.|++++|...+..+..+.++++|++|++++|.+.+..+..+..+++|++|++++|. ++.+|.. +..+++|+.|
T Consensus 39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L 117 (229)
T 3e6j_A 39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ-LTVLPSAVFDRLVHLKEL 117 (229)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc-CCccChhHhCcchhhCeE
Confidence 3456666666655444444555555666666666655543333444555666666666653 3333332 3445556666
Q ss_pred eeccccCCccCCCcCCCCCCCCceeecCCCCCccccCC-CCCCCCcceEEecCCc
Q 002284 756 VIYGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFTED-GLFPTNLHSLEIDGMK 809 (943)
Q Consensus 756 ~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~l~~c~ 809 (943)
++++|. +..+|..+..+++|++|++++|. +..++.. ...+++|+.|++++|+
T Consensus 118 ~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 170 (229)
T 3e6j_A 118 FMCCNK-LTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHAYLFGNP 170 (229)
T ss_dssp ECCSSC-CCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSC
T ss_pred eccCCc-ccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCCC
Confidence 665554 33555555555555555555553 3333332 2233555555555554
No 123
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.30 E-value=4.2e-12 Score=120.89 Aligned_cols=137 Identities=21% Similarity=0.222 Sum_probs=111.3
Q ss_pred ccCCceeEEEEEeccCc--cccccccccccccccEEeecccCCCCCCcchhccchhhhccCcccEEEecCccccc-cCcc
Q 002284 31 SFSRNLHHLSYIRGDYD--GVKRFEDLYDIQHLRTLLPVTLLSSRPGYLARSILPRLLKLQRLRVFSLRGYLISE-VPDS 107 (943)
Q Consensus 31 ~~~~~~~~ls~~~~~~~--~~~~~~~~~~~~~Lr~L~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~-lp~~ 107 (943)
..+.+++++.+..+.+. .+. ..+..+++|+.|.+.++ .+.. + ..+..+++|++|++++|.+.. +|..
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~--~~~~~l~~L~~L~l~~n------~l~~-~-~~~~~l~~L~~L~Ls~N~l~~~~~~~ 90 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIE--GLTAEFVNLEFLSLINV------GLIS-V-SNLPKLPKLKKLELSENRIFGGLDML 90 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCS--SCCGGGGGCCEEEEESS------CCCC-C-SSCCCCSSCCEEEEESCCCCSCCCHH
T ss_pred CCcccCCEEECCCCCCChhhHH--HHHHhCCCCCEEeCcCC------CCCC-h-hhhccCCCCCEEECcCCcCchHHHHH
Confidence 45688999999888765 322 23578899999988654 3333 3 555599999999999999988 6777
Q ss_pred ccCCCCCceeecCCCcccccc--hhhhhccccceeecCCCccccccc---HHHhccccCceEEcCCCCCCcccccc
Q 002284 108 IGDLSYLRYLNLSGTQIRTLP--ESVNKLYNLHTLLLEGCRELKKKC---ADMGNLIKLHHLNNSNTDSLEEMPLG 178 (943)
Q Consensus 108 ~~~l~~L~~L~Ls~n~i~~lp--~~i~~L~~L~~L~L~~n~~~~~~p---~~~~~L~~L~~L~l~~n~~~~~~p~~ 178 (943)
+..+++|++|++++|.|+.+| ..++.+++|++|++++|.+.+..+ ..+..+++|++|++++|. ..++|.+
T Consensus 91 ~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~ 165 (168)
T 2ell_A 91 AEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPDS 165 (168)
T ss_dssp HHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCSS
T ss_pred HhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC-hhhcccc
Confidence 788999999999999999986 789999999999999997444433 379999999999999998 7777754
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.29 E-value=2.7e-12 Score=124.92 Aligned_cols=84 Identities=20% Similarity=0.235 Sum_probs=43.7
Q ss_pred ccCcccEEEecCcccccc-CccccCCCCCceeecCCCcccccc-hhhhhccccceeecCCCcccccccHHHhccccCceE
Q 002284 87 KLQRLRVFSLRGYLISEV-PDSIGDLSYLRYLNLSGTQIRTLP-ESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHL 164 (943)
Q Consensus 87 ~l~~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L 164 (943)
.+++|++|+|++|.++.+ |..|.++++|++|+|++|+|+.+| ..|+++++|++|++++|.+.+..|..|+.+++|++|
T Consensus 52 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 131 (192)
T 1w8a_A 52 RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSL 131 (192)
T ss_dssp GCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEE
T ss_pred cCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEE
Confidence 555555555555555544 444555555555555555555543 234555555555555554444444445555555555
Q ss_pred EcCCCC
Q 002284 165 NNSNTD 170 (943)
Q Consensus 165 ~l~~n~ 170 (943)
++++|.
T Consensus 132 ~L~~N~ 137 (192)
T 1w8a_A 132 NLASNP 137 (192)
T ss_dssp ECTTCC
T ss_pred EeCCCC
Confidence 555554
No 125
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.29 E-value=6.3e-12 Score=136.16 Aligned_cols=154 Identities=14% Similarity=0.109 Sum_probs=115.4
Q ss_pred CcccccEEEeecCCCchhhHhhhc-ccccccEEEeeccCCcccccccccCCCCccEEeccCCCCCcccCc-CCccccccc
Q 002284 676 LPQALKFLSIWHCSKLESIVERLD-NKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPE-GGLLSAKLK 753 (943)
Q Consensus 676 lp~~L~~L~l~~~~~l~~~~~~~~-~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~p~-~~~~l~~L~ 753 (943)
+|..++.|++++|...+..+..+. ++++|+.|++++|.+.+..+..|.++++|++|+|++|. +..++. .+..+++|+
T Consensus 37 ~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~ 115 (361)
T 2xot_A 37 LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALE 115 (361)
T ss_dssp CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCC
T ss_pred CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCCC
Confidence 446788899988765554445566 88999999999998888777788899999999999985 455554 466788999
Q ss_pred eeeeccccCCccCCCcCCCCCCCCceeecCCCCCccccCCC----CCCCCcceEEecCCcchhccccccCCCCCCC--cc
Q 002284 754 RLVIYGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFTEDG----LFPTNLHSLEIDGMKIWKSLMQLGGFHRYTS--LR 827 (943)
Q Consensus 754 ~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~----~~~~~L~~L~l~~c~~l~~~~~~~~~~~l~~--L~ 827 (943)
.|++++|...+..|..|..+++|++|++++|. +..+|... ..+++|+.|++++|........ .+..++. |+
T Consensus 116 ~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~--~~~~l~~~~l~ 192 (361)
T 2xot_A 116 VLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLT--DLQKLPAWVKN 192 (361)
T ss_dssp EEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCCCCCHH--HHHHSCHHHHT
T ss_pred EEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCCccCHH--HhhhccHhhcc
Confidence 99999988777667788899999999999876 55666654 2468888999988875543221 3455665 47
Q ss_pred EEEecC
Q 002284 828 RLAISG 833 (943)
Q Consensus 828 ~L~l~~ 833 (943)
.|++++
T Consensus 193 ~l~l~~ 198 (361)
T 2xot_A 193 GLYLHN 198 (361)
T ss_dssp TEECCS
T ss_pred eEEecC
Confidence 788877
No 126
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.27 E-value=9.3e-13 Score=155.51 Aligned_cols=121 Identities=23% Similarity=0.294 Sum_probs=105.8
Q ss_pred cccccccccEEeecccCCCCCCcchhccchhhhccCcccEEEecCccccccCccccCCCCCceeecCCCcccccchhhhh
Q 002284 54 DLYDIQHLRTLLPVTLLSSRPGYLARSILPRLLKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNK 133 (943)
Q Consensus 54 ~~~~~~~Lr~L~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~ 133 (943)
.+..++.|++|.+.++ .+ ..+|..++.+++|++|+|++|.++.+|.+|+++++|++|+|++|.|+.+|..|++
T Consensus 219 ~~~~l~~L~~L~Ls~n------~l-~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~ 291 (727)
T 4b8c_D 219 SKYDDQLWHALDLSNL------QI-FNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGS 291 (727)
T ss_dssp ---CCCCCCEEECTTS------CC-SCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGG
T ss_pred hhccCCCCcEEECCCC------CC-CCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcC
Confidence 4567889999977544 44 4789999999999999999999999999999999999999999999999999999
Q ss_pred ccccceeecCCCcccccccHHHhccccCceEEcCCCCCCcccccccccc
Q 002284 134 LYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNTDSLEEMPLGIGKL 182 (943)
Q Consensus 134 L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l~~n~~~~~~p~~~~~L 182 (943)
|++|++|+|++|. ++.+|..|++|++|++|++++|.+.+.+|..++.+
T Consensus 292 l~~L~~L~L~~N~-l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~ 339 (727)
T 4b8c_D 292 CFQLKYFYFFDNM-VTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEK 339 (727)
T ss_dssp GTTCSEEECCSSC-CCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHH
T ss_pred CCCCCEEECCCCC-CCccChhhhcCCCccEEeCCCCccCCCChHHHhhc
Confidence 9999999999996 67889999999999999999999666777666554
No 127
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.25 E-value=1.5e-11 Score=131.37 Aligned_cols=290 Identities=14% Similarity=0.107 Sum_probs=158.9
Q ss_pred ccccccEEeecccCCCCCCcchhccchhhhc-cCcccEEEecCccccccCccccCCCCCceeecCCCcccccc-hhhhh-
Q 002284 57 DIQHLRTLLPVTLLSSRPGYLARSILPRLLK-LQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLP-ESVNK- 133 (943)
Q Consensus 57 ~~~~Lr~L~~~~~~~l~~~~~~~~~~~~~~~-l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp-~~i~~- 133 (943)
.+.+++.|.+.+.- ...-...+.. +++|++|||++|.+......-+.++.++++.+..| .|| .+|.+
T Consensus 23 ~~~~l~~L~l~g~i-------~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~ 92 (329)
T 3sb4_A 23 EANSITHLTLTGKL-------NAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNV 92 (329)
T ss_dssp HHHHCSEEEEEEEE-------CHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEE
T ss_pred hhCceeEEEEeccc-------cHHHHHHHHHhhccCeEEecCcceeEEecCcccccccccccccccc---ccCHHHhccc
Confidence 35567777664421 1222233333 78899999999998832111123333566666665 454 46777
Q ss_pred -------ccccceeecCCCccccccc-HHHhccccCceEEcCCCCCCcccccc-ccccccccccCceEeccCCCCCcccc
Q 002284 134 -------LYNLHTLLLEGCRELKKKC-ADMGNLIKLHHLNNSNTDSLEEMPLG-IGKLTCLLTLCNFVVGKDSGSGLREL 204 (943)
Q Consensus 134 -------L~~L~~L~L~~n~~~~~~p-~~~~~L~~L~~L~l~~n~~~~~~p~~-~~~L~~L~~L~~~~~~~~~~~~~~~l 204 (943)
+++|+.|++.+ . +..++ ..|.++++|+.+++.+|. +..++.. |....++..+....... ....
T Consensus 93 ~~~~~~g~~~L~~l~L~~-~-i~~I~~~aF~~~~~L~~l~l~~n~-i~~i~~~aF~~~~~l~~l~~~~~~~-----~~~~ 164 (329)
T 3sb4_A 93 VNGVTKGKQTLEKVILSE-K-IKNIEDAAFKGCDNLKICQIRKKT-APNLLPEALADSVTAIFIPLGSSDA-----YRFK 164 (329)
T ss_dssp ETTEEEECTTCCC-CBCT-T-CCEECTTTTTTCTTCCEEEBCCSS-CCEECTTSSCTTTCEEEECTTCTHH-----HHTS
T ss_pred ccccccccCCCcEEECCc-c-ccchhHHHhhcCcccceEEcCCCC-ccccchhhhcCCCceEEecCcchhh-----hhcc
Confidence 89999999988 4 44444 459999999999999888 5555544 76666555552111000 0000
Q ss_pred cCcccccCceeecccccccCccchhhcccCCCCCCC-eEEEEeecCCCCCCchhhhhHHhhhccCCCCCCcceEEEEeeC
Q 002284 205 KLLTHLCGTLNISKLENVKYVGDAMEAQLDGKKNLK-VLMLEWTRSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFG 283 (943)
Q Consensus 205 ~~l~~L~~~l~~~~l~~~~~~~~~~~~~l~~~~~L~-~L~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~ 283 (943)
..+ -...+.++..|+ .+.+.... ..............++..+.+.+.-
T Consensus 165 ~~i---------------------~~~~f~~~~~L~~~i~~~~~~----------~l~~~~~~~~~~~~~~~~l~~~~~l 213 (329)
T 3sb4_A 165 NRW---------------------EHFAFIEGEPLETTIQVGAMG----------KLEDEIMKAGLQPRDINFLTIEGKL 213 (329)
T ss_dssp TTT---------------------TTSCEEESCCCEEEEEECTTC----------CHHHHHHHTTCCGGGCSEEEEEECC
T ss_pred ccc---------------------cccccccccccceeEEecCCC----------cHHHHHhhcccCccccceEEEeeee
Confidence 000 000122222333 12221000 0111111222223344555554431
Q ss_pred CCCCCcccCCCCcCCeeEEEEeCCCCCCCCC-CCCCCCCCCeeEEecCcCceeeCccccCCCCCCCCCCcc-eeeccccc
Q 002284 284 GKKFPTWLGYSLFSNLVTLKFQDCSMCTSMP-SVGQLPSLKHLEVRGMSRVKRLGSEFYGNDSPIPFPCLE-TLHFAEMQ 361 (943)
Q Consensus 284 ~~~~p~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~ 361 (943)
...-...+. ..+++|+++++.+|.+....+ .|.++++|+.+++.+| +..++...+.. +++|+ .+.+.+
T Consensus 214 ~~~~~~~l~-~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~-----~~~L~~~l~l~~-- 283 (329)
T 3sb4_A 214 DNADFKLIR-DYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSN-----CGRLAGTLELPA-- 283 (329)
T ss_dssp CHHHHHHHH-HHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTT-----CTTCCEEEEECT--
T ss_pred cHHHHHHHH-HhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhC-----ChhccEEEEEcc--
Confidence 110000000 125678888888877765555 7888888888888876 55555444333 77787 777766
Q ss_pred ccccccccccCCccccCCcccEEeeccCCCccCCCCCCCCCccEEEEeccCCCCccceEE
Q 002284 362 EWEEWIPHGCSQEIEGFPKLRELHIVRCSKLQGTLPTHLTLLDILVVQNFTSLPALCKLR 421 (943)
Q Consensus 362 ~l~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~~p~~l~~L~~L~~~~~~~l~~L~~L~ 421 (943)
.++.+ -+..|..+++|+++++++ ++++ .++... |.++++|+.++
T Consensus 284 ~l~~I----~~~aF~~c~~L~~l~l~~-n~i~-~I~~~a----------F~~~~~L~~ly 327 (329)
T 3sb4_A 284 SVTAI----EFGAFMGCDNLRYVLATG-DKIT-TLGDEL----------FGNGVPSKLIY 327 (329)
T ss_dssp TCCEE----CTTTTTTCTTEEEEEECS-SCCC-EECTTT----------TCTTCCCCEEE
T ss_pred cceEE----chhhhhCCccCCEEEeCC-CccC-ccchhh----------hcCCcchhhhc
Confidence 23332 245677888999999887 6777 666544 66777777665
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.24 E-value=1.4e-11 Score=119.69 Aligned_cols=95 Identities=21% Similarity=0.221 Sum_probs=83.8
Q ss_pred cEEEecCccccccCccccCCCCCceeecCCCcccccchhhhhccccceeecCCCcccccccHHHhccccCceEEcCCCCC
Q 002284 92 RVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSNTDS 171 (943)
Q Consensus 92 ~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l~~n~~ 171 (943)
++++++++.++.+|..+. .+|++|++++|.|+.+|..|.++++|++|++++|.+.+..|..|.++++|++|++++|.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~- 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR- 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc-
Confidence 689999999999998765 68999999999999999999999999999999998666666779999999999999999
Q ss_pred Cccccc-cccccccccccC
Q 002284 172 LEEMPL-GIGKLTCLLTLC 189 (943)
Q Consensus 172 ~~~~p~-~~~~L~~L~~L~ 189 (943)
+..+|. .|+.+++|+.|+
T Consensus 90 l~~i~~~~f~~l~~L~~L~ 108 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLS 108 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEE
T ss_pred cCEeCHHHhCCCCCCCEEE
Confidence 555554 588888888883
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.23 E-value=7.6e-12 Score=116.34 Aligned_cols=101 Identities=18% Similarity=0.191 Sum_probs=90.9
Q ss_pred ccCcccEEEecCcccc--ccCccccCCCCCceeecCCCcccccchhhhhccccceeecCCCcccccccHHHhccccCceE
Q 002284 87 KLQRLRVFSLRGYLIS--EVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHL 164 (943)
Q Consensus 87 ~l~~L~~L~L~~n~i~--~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L 164 (943)
..++|++|++++|.++ .+|..+..+++|++|++++|.++.+ ..++.+++|++|++++|.+.+.+|..++.+++|++|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 5689999999999998 8899999999999999999999998 789999999999999998666688889999999999
Q ss_pred EcCCCCCCcccc--ccccccccccccC
Q 002284 165 NNSNTDSLEEMP--LGIGKLTCLLTLC 189 (943)
Q Consensus 165 ~l~~n~~~~~~p--~~~~~L~~L~~L~ 189 (943)
++++|. +..+| ..++.+++|++|+
T Consensus 94 ~ls~N~-i~~~~~~~~~~~l~~L~~L~ 119 (149)
T 2je0_A 94 NLSGNK-IKDLSTIEPLKKLENLKSLD 119 (149)
T ss_dssp ECTTSC-CCSHHHHGGGGGCTTCCEEE
T ss_pred ECCCCc-CCChHHHHHHhhCCCCCEEe
Confidence 999999 66654 6788888888884
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.23 E-value=1.3e-11 Score=120.14 Aligned_cols=108 Identities=19% Similarity=0.188 Sum_probs=73.9
Q ss_pred hccchhhhccCcccEEEecCccccccCc--cccCCCCCceeecCCCccccc-chhhhhccccceeecCCCcccccccHHH
Q 002284 79 RSILPRLLKLQRLRVFSLRGYLISEVPD--SIGDLSYLRYLNLSGTQIRTL-PESVNKLYNLHTLLLEGCRELKKKCADM 155 (943)
Q Consensus 79 ~~~~~~~~~l~~L~~L~L~~n~i~~lp~--~~~~l~~L~~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~n~~~~~~p~~~ 155 (943)
+.+|..++. ++++|++++|.++.++. .|+.+++|++|+|++|.|+.+ |..|+++++|++|+|++|.+.+..|..|
T Consensus 21 ~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 98 (192)
T 1w8a_A 21 KEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMF 98 (192)
T ss_dssp SSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSS
T ss_pred CcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHh
Confidence 456665543 77777777777777754 367777778888877777777 5677777777788877776555555557
Q ss_pred hccccCceEEcCCCCCCcccccccccccccccc
Q 002284 156 GNLIKLHHLNNSNTDSLEEMPLGIGKLTCLLTL 188 (943)
Q Consensus 156 ~~L~~L~~L~l~~n~~~~~~p~~~~~L~~L~~L 188 (943)
+++++|++|++++|.+.+..|..++.+++|++|
T Consensus 99 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 131 (192)
T 1w8a_A 99 LGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSL 131 (192)
T ss_dssp TTCTTCCEEECCSSCCCEECTTSSTTCTTCCEE
T ss_pred cCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEE
Confidence 777777777777777444445555555555544
No 131
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.19 E-value=1.2e-10 Score=124.33 Aligned_cols=110 Identities=14% Similarity=0.116 Sum_probs=58.8
Q ss_pred ccccEEEeecCCCchhhHhhhcccccccEEEeeccCCcccccccccCCCCccEEeccCCCCCcccCcC-Cccccccc-ee
Q 002284 678 QALKFLSIWHCSKLESIVERLDNKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEG-GLLSAKLK-RL 755 (943)
Q Consensus 678 ~~L~~L~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~-~~~l~~L~-~L 755 (943)
.++..+.+.+.-...........+++|+.+++++|.....-+..|.++++|+++++.+| +..++.. +..+++|+ .+
T Consensus 202 ~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l 279 (329)
T 3sb4_A 202 RDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTL 279 (329)
T ss_dssp GGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEE
T ss_pred cccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEE
Confidence 45666666664322222222233666666666666554444455666666666666665 5555543 44466666 66
Q ss_pred eeccccCCccC-CCcCCCCCCCCceeecCCCCCccccC
Q 002284 756 VIYGCKKLEAL-PEGMHNLSSLQYLTIGGVPSLLCFTE 792 (943)
Q Consensus 756 ~l~~~~~l~~~-p~~~~~l~~L~~L~l~~~~~l~~~~~ 792 (943)
++.+ . +..+ +..|.++++|+.++++++. +..++.
T Consensus 280 ~l~~-~-l~~I~~~aF~~c~~L~~l~l~~n~-i~~I~~ 314 (329)
T 3sb4_A 280 ELPA-S-VTAIEFGAFMGCDNLRYVLATGDK-ITTLGD 314 (329)
T ss_dssp EECT-T-CCEECTTTTTTCTTEEEEEECSSC-CCEECT
T ss_pred EEcc-c-ceEEchhhhhCCccCCEEEeCCCc-cCccch
Confidence 6655 2 3333 3455666666666665433 344433
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.17 E-value=1.7e-11 Score=117.48 Aligned_cols=102 Identities=27% Similarity=0.348 Sum_probs=86.4
Q ss_pred hhhccCcccEEEecCccccccCccccCCC-CCceeecCCCcccccchhhhhccccceeecCCCcccccccH-HHhccccC
Q 002284 84 RLLKLQRLRVFSLRGYLISEVPDSIGDLS-YLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCA-DMGNLIKL 161 (943)
Q Consensus 84 ~~~~l~~L~~L~L~~n~i~~lp~~~~~l~-~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~-~~~~L~~L 161 (943)
.+..+.+|++|++++|.++.+|. +..+. +|++|++++|.|+.+ ..++.+++|++|++++|.+. .+|. .++.+++|
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L 90 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDL 90 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTC
T ss_pred hcCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCccc-ccCcchhhcCCCC
Confidence 34488999999999999999865 55555 999999999999998 68999999999999999754 5554 46999999
Q ss_pred ceEEcCCCCCCccccc--cccccccccccC
Q 002284 162 HHLNNSNTDSLEEMPL--GIGKLTCLLTLC 189 (943)
Q Consensus 162 ~~L~l~~n~~~~~~p~--~~~~L~~L~~L~ 189 (943)
++|++++|. ++.+|. .++.+++|+.|+
T Consensus 91 ~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 91 TELILTNNS-LVELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp CEEECCSCC-CCCGGGGGGGGGCTTCCEEE
T ss_pred CEEECCCCc-CCcchhhHhhhcCCCCCEEE
Confidence 999999999 788886 677788887773
No 133
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.16 E-value=9.1e-13 Score=129.25 Aligned_cols=103 Identities=19% Similarity=0.222 Sum_probs=80.7
Q ss_pred chhhhccCcccEEEecCccccccCccccCCCCCceeecCCCcccccchhhhhccccceeecCCCcccccccHHHhccccC
Q 002284 82 LPRLLKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNKLYNLHTLLLEGCRELKKKCADMGNLIKL 161 (943)
Q Consensus 82 ~~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L 161 (943)
|..+..+++|++|++++|.++.+| .+..+++|++|++++|.++.+|..+..+++|++|++++|. +..+| .++.+++|
T Consensus 41 ~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~~~~l~~L 117 (198)
T 1ds9_A 41 DATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASLS-GIEKLVNL 117 (198)
T ss_dssp HHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE-CCCHH-HHHHHHHS
T ss_pred hHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc-CCcCC-ccccCCCC
Confidence 336668888888888888888888 7888888888888888888888888888888888888885 44455 68888888
Q ss_pred ceEEcCCCCCCccccc--ccccccccccc
Q 002284 162 HHLNNSNTDSLEEMPL--GIGKLTCLLTL 188 (943)
Q Consensus 162 ~~L~l~~n~~~~~~p~--~~~~L~~L~~L 188 (943)
++|++++|. +..+|. .++.+++|++|
T Consensus 118 ~~L~l~~N~-i~~~~~~~~l~~l~~L~~L 145 (198)
T 1ds9_A 118 RVLYMSNNK-ITNWGEIDKLAALDKLEDL 145 (198)
T ss_dssp SEEEESEEE-CCCHHHHHHHTTTTTCSEE
T ss_pred CEEECCCCc-CCchhHHHHHhcCCCCCEE
Confidence 888888887 555543 46666666655
No 134
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.13 E-value=6.8e-11 Score=112.56 Aligned_cols=102 Identities=21% Similarity=0.206 Sum_probs=83.3
Q ss_pred hhccchhhhccCcccEEEecCcccccc-CccccCCCCCceeecCCCcccccch-hhhhccccceeecCCCcccccccH-H
Q 002284 78 ARSILPRLLKLQRLRVFSLRGYLISEV-PDSIGDLSYLRYLNLSGTQIRTLPE-SVNKLYNLHTLLLEGCRELKKKCA-D 154 (943)
Q Consensus 78 ~~~~~~~~~~l~~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~n~~~~~~p~-~ 154 (943)
.+.+|..+. ++|++|+|++|.++.+ |..|.++++|++|+|++|+|+.+|. .|.++++|++|+|++|.+ ..+|. .
T Consensus 24 l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l-~~l~~~~ 100 (174)
T 2r9u_A 24 LASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHL-KSIPRGA 100 (174)
T ss_dssp CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTT
T ss_pred CCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcc-ceeCHHH
Confidence 356777665 8899999999999988 6788999999999999999999975 468999999999999974 45554 4
Q ss_pred HhccccCceEEcCCCCCCccccccccccc
Q 002284 155 MGNLIKLHHLNNSNTDSLEEMPLGIGKLT 183 (943)
Q Consensus 155 ~~~L~~L~~L~l~~n~~~~~~p~~~~~L~ 183 (943)
|..+++|++|++++|. +...+..+..+.
T Consensus 101 ~~~l~~L~~L~L~~N~-~~c~~~~~~~l~ 128 (174)
T 2r9u_A 101 FDNLKSLTHIYLYNNP-WDCECRDIMYLR 128 (174)
T ss_dssp TTTCTTCSEEECCSSC-BCTTBGGGHHHH
T ss_pred hccccCCCEEEeCCCC-cccccccHHHHH
Confidence 9999999999999998 666665444443
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.10 E-value=1.3e-10 Score=111.46 Aligned_cols=89 Identities=24% Similarity=0.324 Sum_probs=49.3
Q ss_pred cchhhh-ccCcccEEEecCccccccCc-cccCCCCCceeecCCCcccccch-hhhhccccceeecCCCcccccccHH-Hh
Q 002284 81 ILPRLL-KLQRLRVFSLRGYLISEVPD-SIGDLSYLRYLNLSGTQIRTLPE-SVNKLYNLHTLLLEGCRELKKKCAD-MG 156 (943)
Q Consensus 81 ~~~~~~-~l~~L~~L~L~~n~i~~lp~-~~~~l~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~n~~~~~~p~~-~~ 156 (943)
+++..+ .+++|++|++++|.++.+|. .|..+++|++|++++|.|+.+|. .++.+++|++|++++|.+. .+|.. +.
T Consensus 43 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~ 121 (177)
T 2o6r_A 43 LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFD 121 (177)
T ss_dssp CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTT
T ss_pred eCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcce-EeCHHHhc
Confidence 344433 56666666666666655543 34566666666666666665543 3455666666666665433 33332 45
Q ss_pred ccccCceEEcCCCC
Q 002284 157 NLIKLHHLNNSNTD 170 (943)
Q Consensus 157 ~L~~L~~L~l~~n~ 170 (943)
.+++|++|++++|.
T Consensus 122 ~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 122 RLTSLQKIWLHTNP 135 (177)
T ss_dssp TCTTCCEEECCSSC
T ss_pred CCcccCEEEecCCC
Confidence 56666666666665
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.08 E-value=1.4e-10 Score=110.00 Aligned_cols=90 Identities=24% Similarity=0.291 Sum_probs=74.0
Q ss_pred hccchhhhccCcccEEEecCcccccc-CccccCCCCCceeecCCCcccccch-hhhhccccceeecCCCcccccccHHHh
Q 002284 79 RSILPRLLKLQRLRVFSLRGYLISEV-PDSIGDLSYLRYLNLSGTQIRTLPE-SVNKLYNLHTLLLEGCRELKKKCADMG 156 (943)
Q Consensus 79 ~~~~~~~~~l~~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~Ls~n~i~~lp~-~i~~L~~L~~L~L~~n~~~~~~p~~~~ 156 (943)
..+|..++ +.|++|+|++|.++.+ |..|.++++|++|+|++|+|+.+|. .|.++++|++|+|++|.+.+..|..|.
T Consensus 22 ~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~ 99 (170)
T 3g39_A 22 ASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFD 99 (170)
T ss_dssp SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred CccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhc
Confidence 45666654 7889999999999888 6778999999999999999998865 568999999999999875444444588
Q ss_pred ccccCceEEcCCCC
Q 002284 157 NLIKLHHLNNSNTD 170 (943)
Q Consensus 157 ~L~~L~~L~l~~n~ 170 (943)
++++|++|++++|.
T Consensus 100 ~l~~L~~L~L~~N~ 113 (170)
T 3g39_A 100 NLKSLTHIWLLNNP 113 (170)
T ss_dssp TCTTCCEEECCSSC
T ss_pred CCCCCCEEEeCCCC
Confidence 99999999999998
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.07 E-value=6.2e-12 Score=123.25 Aligned_cols=126 Identities=23% Similarity=0.257 Sum_probs=104.1
Q ss_pred cccccccccEEeecccCCCCCCcchhccchhhhccCcccEEEecCccccccCccccCCCCCceeecCCCcccccchhhhh
Q 002284 54 DLYDIQHLRTLLPVTLLSSRPGYLARSILPRLLKLQRLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTLPESVNK 133 (943)
Q Consensus 54 ~~~~~~~Lr~L~~~~~~~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~i~~ 133 (943)
.+..+++|++|.+.++ .+.. +| .+..+++|++|++++|.++.+|..+..+++|++|++++|+++.+| .++.
T Consensus 43 ~~~~l~~L~~L~ls~n------~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~ 113 (198)
T 1ds9_A 43 TLSTLKACKHLALSTN------NIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEK 113 (198)
T ss_dssp HHHHTTTCSEEECSEE------EESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHH
T ss_pred HHhcCCCCCEEECCCC------CCcc-cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-cccc
Confidence 5678899999987543 4443 66 666999999999999999999998888999999999999999997 6999
Q ss_pred ccccceeecCCCccccccc--HHHhccccCceEEcCCCCCCcccccc----------ccccccccccC
Q 002284 134 LYNLHTLLLEGCRELKKKC--ADMGNLIKLHHLNNSNTDSLEEMPLG----------IGKLTCLLTLC 189 (943)
Q Consensus 134 L~~L~~L~L~~n~~~~~~p--~~~~~L~~L~~L~l~~n~~~~~~p~~----------~~~L~~L~~L~ 189 (943)
+++|++|++++|. +..+| ..+..+++|++|++++|.+.+..|.. +..+++|+.|+
T Consensus 114 l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 114 LVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 9999999999996 44444 46999999999999999844444432 67788888774
No 138
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.06 E-value=1.4e-10 Score=109.97 Aligned_cols=101 Identities=22% Similarity=0.285 Sum_probs=86.2
Q ss_pred cccEEEecCccccccCccccCCCCCceeecCCCccccc-chhhhhccccceeecCCCcccccccHHHhccccCceEEcCC
Q 002284 90 RLRVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTL-PESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSN 168 (943)
Q Consensus 90 ~L~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l~~ 168 (943)
..+++++++|.++.+|..+. ++|++|+|++|+|+.+ |..|+++++|++|+|++|.+.+..|..|.++++|++|++++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 35789999999999998774 8999999999999999 57899999999999999975554445589999999999999
Q ss_pred CCCCcccccc-ccccccccccCceEe
Q 002284 169 TDSLEEMPLG-IGKLTCLLTLCNFVV 193 (943)
Q Consensus 169 n~~~~~~p~~-~~~L~~L~~L~~~~~ 193 (943)
|. +..+|.+ |+.+++|+.|+...+
T Consensus 88 N~-l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 88 NQ-LKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp SC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred Cc-cCEeCHHHhcCCCCCCEEEeCCC
Confidence 99 6777765 899999998854433
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.05 E-value=1.7e-10 Score=109.86 Aligned_cols=98 Identities=21% Similarity=0.331 Sum_probs=85.1
Q ss_pred cEEEecCccccccCccccCCCCCceeecCCCccccc-chhhhhccccceeecCCCcccccccH-HHhccccCceEEcCCC
Q 002284 92 RVFSLRGYLISEVPDSIGDLSYLRYLNLSGTQIRTL-PESVNKLYNLHTLLLEGCRELKKKCA-DMGNLIKLHHLNNSNT 169 (943)
Q Consensus 92 ~~L~L~~n~i~~lp~~~~~l~~L~~L~Ls~n~i~~l-p~~i~~L~~L~~L~L~~n~~~~~~p~-~~~~L~~L~~L~l~~n 169 (943)
+++++++|.++.+|..+. ++|++|+|++|+|+.+ |..|+++++|++|+|++|.+ ..+|. .|+++++|++|++++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKL-TAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCC-CccChhHhCCcchhhEEECCCC
Confidence 789999999999998775 8999999999999999 57899999999999999974 45555 4799999999999999
Q ss_pred CCCcccccc-ccccccccccCceEe
Q 002284 170 DSLEEMPLG-IGKLTCLLTLCNFVV 193 (943)
Q Consensus 170 ~~~~~~p~~-~~~L~~L~~L~~~~~ 193 (943)
. +..+|.+ |+.+++|+.|+...+
T Consensus 92 ~-l~~l~~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 92 H-LKSIPRGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp C-CCCCCTTTTTTCTTCSEEECCSS
T ss_pred c-cceeCHHHhccccCCCEEEeCCC
Confidence 9 7777776 899999998854433
No 140
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.03 E-value=1.2e-08 Score=110.89 Aligned_cols=235 Identities=10% Similarity=0.115 Sum_probs=118.9
Q ss_pred CCCceeeeeEeecCccccccchhhhhhcccccCeEEeecCCCcccchhhhhhhcCccceeceEEEecCCCcCccchhccC
Q 002284 459 PKLDELDISIIIDGLSYIWQNETQLLQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPKSLLS 538 (943)
Q Consensus 459 ~~L~~L~Ls~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 538 (943)
..++.+.+. +.+..++...|.+. +|+.+.+..+ ++.+.... |.+ .+|+.+.+.+ .....-+.+|.+
T Consensus 113 ~~l~~i~ip------~~i~~I~~~aF~~~-~L~~i~l~~~--i~~I~~~a---F~~-~~L~~i~lp~-~l~~I~~~aF~~ 178 (401)
T 4fdw_A 113 KGYNEIILP------NSVKSIPKDAFRNS-QIAKVVLNEG--LKSIGDMA---FFN-STVQEIVFPS-TLEQLKEDIFYY 178 (401)
T ss_dssp SSCSEEECC------TTCCEECTTTTTTC-CCSEEECCTT--CCEECTTT---TTT-CCCCEEECCT-TCCEECSSTTTT
T ss_pred CCccEEEEC------CccCEehHhhcccC-CccEEEeCCC--ccEECHHh---cCC-CCceEEEeCC-CccEehHHHhhC
Confidence 445555444 34455555666664 5777776654 66666554 555 3577777765 233333346677
Q ss_pred CCCcCeeeccCCCCCcccCCCCC-CCCccEEEEecCCCCCcCccccccCCCCCccEEEeecCCCcccccCcCCCCCCceE
Q 002284 539 LSSLTEMRIHNCSSLVSFPEAVL-PSQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHCHLLTYIAGVQLPPSLKQL 617 (943)
Q Consensus 539 l~~L~~L~L~~n~~l~~~~~~~~-~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L 617 (943)
+++|+.+++.+|. +..++...+ ..+|+.+.+..+ +..++... +.++++|+.+++..+ ++.++...+
T Consensus 179 c~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~a-F~~~~~L~~l~l~~~--l~~I~~~aF------- 245 (401)
T 4fdw_A 179 CYNLKKADLSKTK-ITKLPASTFVYAGIEEVLLPVT--LKEIGSQA-FLKTSQLKTIEIPEN--VSTIGQEAF------- 245 (401)
T ss_dssp CTTCCEEECTTSC-CSEECTTTTTTCCCSEEECCTT--CCEECTTT-TTTCTTCCCEECCTT--CCEECTTTT-------
T ss_pred cccCCeeecCCCc-ceEechhhEeecccCEEEeCCc--hheehhhH-hhCCCCCCEEecCCC--ccCcccccc-------
Confidence 7777777777664 444444333 345555555432 33333222 334555555555432 111111100
Q ss_pred EeccCcCccccccccCcccccccCCccceeeeecCCCcccccchhhHHHHhhhhhcCCCcccccEEEeecCCCchhh-Hh
Q 002284 618 EIYNCDNLRTLTAEEGIHSSRRHTSLLECLEIHSCPSLTCLISKNELRAALDYLVVGNLPQALKFLSIWHCSKLESI-VE 696 (943)
Q Consensus 618 ~l~~~~~L~~l~~~~~~~~~~~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~lp~~L~~L~l~~~~~l~~~-~~ 696 (943)
.. .+|+.+.+.+ .++.+ ..
T Consensus 246 --------------------------------------------------------~~--~~L~~i~lp~--~i~~I~~~ 265 (401)
T 4fdw_A 246 --------------------------------------------------------RE--SGITTVKLPN--GVTNIASR 265 (401)
T ss_dssp --------------------------------------------------------TT--CCCSEEEEET--TCCEECTT
T ss_pred --------------------------------------------------------cc--CCccEEEeCC--CccEEChh
Confidence 00 1344444422 12222 23
Q ss_pred hhcccccccEEEeeccCCc-----ccccccccCCCCccEEeccCCCCCcccCcC-CccccccceeeeccccCCccC-CCc
Q 002284 697 RLDNKISLEVIEIVSCENL-----KMLPHGLHKLWHLQEIDIQDCENLVSFPEG-GLLSAKLKRLVIYGCKKLEAL-PEG 769 (943)
Q Consensus 697 ~~~~l~~L~~L~l~~~~~~-----~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~-~~~l~~L~~L~l~~~~~l~~~-p~~ 769 (943)
.|.++++|+.+++.++... ..-+..|.++++|+.+++.+ .+..++.. +..+++|+.+++..+ +..+ +..
T Consensus 266 aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~a 341 (401)
T 4fdw_A 266 AFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPAN--VTQINFSA 341 (401)
T ss_dssp TTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECTT--CCEECTTS
T ss_pred HhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECcc--ccEEcHHh
Confidence 4556666666666555432 22245566677777777764 25555543 344566666666443 3333 335
Q ss_pred CCCCCCCCceeecCCC
Q 002284 770 MHNLSSLQYLTIGGVP 785 (943)
Q Consensus 770 ~~~l~~L~~L~l~~~~ 785 (943)
|.++ +|+.+++.++.
T Consensus 342 F~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 342 FNNT-GIKEVKVEGTT 356 (401)
T ss_dssp SSSS-CCCEEEECCSS
T ss_pred CCCC-CCCEEEEcCCC
Confidence 5666 66666666653
No 141
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.95 E-value=2.1e-09 Score=102.99 Aligned_cols=108 Identities=18% Similarity=0.089 Sum_probs=55.3
Q ss_pred ccccEEEeeccCCcccccccccCCCCccEEeccCCCCCcccCcC-CccccccceeeeccccCCccCCCcCCCCCCCCcee
Q 002284 702 ISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEG-GLLSAKLKRLVIYGCKKLEALPEGMHNLSSLQYLT 780 (943)
Q Consensus 702 ~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~-~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~ 780 (943)
++|+.|++++|.+.+..+..+..+++|++|++++|. ++.+|.. +..+++|+.|++++|...+..+..+..+++|++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence 345555555555444334444555666666666553 3333332 34455666666666554433333445566666666
Q ss_pred ecCCCCCccccCCC-CCCCCcceEEecCCcch
Q 002284 781 IGGVPSLLCFTEDG-LFPTNLHSLEIDGMKIW 811 (943)
Q Consensus 781 l~~~~~l~~~~~~~-~~~~~L~~L~l~~c~~l 811 (943)
+++|. ++.++... ..+++|++|++++|+..
T Consensus 107 l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 107 LDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CcCCc-ceEeCHHHhcCCcccCEEEecCCCee
Confidence 66553 33444433 23456666666666543
No 142
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.90 E-value=5.3e-08 Score=106.63 Aligned_cols=111 Identities=15% Similarity=0.084 Sum_probs=59.8
Q ss_pred cchhhhhhcccccCeEEeecCCCcccchhhhhhhcCccceeceEEEecCCCcCccchhccCCCCcCeeeccCCCCCcccC
Q 002284 478 QNETQLLQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPKSLLSLSSLTEMRIHNCSSLVSFP 557 (943)
Q Consensus 478 ~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n~~l~~~~ 557 (943)
.+....|.++++|+.+.+.+. +..+.... |.++.+|+.+.+..+ ....-..+|..+..|+.+.+..+. ..+.
T Consensus 152 ~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~---F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~--~~i~ 223 (394)
T 4fs7_A 152 VIGDEAFATCESLEYVSLPDS--METLHNGL---FSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSL--YYLG 223 (394)
T ss_dssp EECTTTTTTCTTCCEEECCTT--CCEECTTT---TTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTC--CEEC
T ss_pred ccchhhhcccCCCcEEecCCc--cceecccc---ccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCc--eEee
Confidence 344556677777777777643 44555544 777777777777654 222233466677777777666542 2222
Q ss_pred CCCC-CCCccEEEEecCCCCCcCccccccCCCCCccEEEeecC
Q 002284 558 EAVL-PSQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHC 599 (943)
Q Consensus 558 ~~~~-~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~n 599 (943)
...+ ...|+.+.+.... ..+.... +.++..|+.+.+..+
T Consensus 224 ~~~~~~~~l~~i~ip~~~--~~i~~~~-f~~~~~l~~~~~~~~ 263 (394)
T 4fs7_A 224 DFALSKTGVKNIIIPDSF--TELGKSV-FYGCTDLESISIQNN 263 (394)
T ss_dssp TTTTTTCCCCEEEECTTC--CEECSST-TTTCSSCCEEEECCT
T ss_pred hhhcccCCCceEEECCCc--eeccccc-ccccccceeEEcCCC
Confidence 2222 3556666654322 2222221 345666666666544
No 143
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.89 E-value=2.5e-08 Score=109.31 Aligned_cols=83 Identities=7% Similarity=0.066 Sum_probs=47.7
Q ss_pred ccCCCCceeeeeEeecCccccccchhhhhhcccccCeEEeecCCCcccchhhhhhhcCccceeceEEEecCCCcCccchh
Q 002284 456 LQLPKLDELDISIIIDGLSYIWQNETQLLQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPKS 535 (943)
Q Consensus 456 ~~l~~L~~L~Ls~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 535 (943)
....+|+.+.+. .++..+....|.++.+|+.+.+.+. ++.+.... |.++.+|+.+.+..+ ....-..+
T Consensus 294 ~~~~~L~~i~l~------~~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~a---F~~c~~L~~i~lp~~-l~~I~~~a 361 (394)
T 4fs7_A 294 YGCSSLTEVKLL------DSVKFIGEEAFESCTSLVSIDLPYL--VEEIGKRS---FRGCTSLSNINFPLS-LRKIGANA 361 (394)
T ss_dssp TTCTTCCEEEEC------TTCCEECTTTTTTCTTCCEECCCTT--CCEECTTT---TTTCTTCCEECCCTT-CCEECTTT
T ss_pred cccccccccccc------cccceechhhhcCCCCCCEEEeCCc--ccEEhHHh---ccCCCCCCEEEECcc-ccEehHHH
Confidence 345555555554 2344555566666667776666532 55555544 666677777766554 22222346
Q ss_pred ccCCCCcCeeeccCC
Q 002284 536 LLSLSSLTEMRIHNC 550 (943)
Q Consensus 536 ~~~l~~L~~L~L~~n 550 (943)
|.++++|+.+++..+
T Consensus 362 F~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 362 FQGCINLKKVELPKR 376 (394)
T ss_dssp BTTCTTCCEEEEEGG
T ss_pred hhCCCCCCEEEECCC
Confidence 666777777776543
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.87 E-value=3.8e-08 Score=107.09 Aligned_cols=256 Identities=12% Similarity=0.090 Sum_probs=139.5
Q ss_pred cccccEEeecccCCCCCCcchhccchhhh-ccCcccEEEecCccccccC-ccccCCCCCceeecCCCcccccc-hhhhhc
Q 002284 58 IQHLRTLLPVTLLSSRPGYLARSILPRLL-KLQRLRVFSLRGYLISEVP-DSIGDLSYLRYLNLSGTQIRTLP-ESVNKL 134 (943)
Q Consensus 58 ~~~Lr~L~~~~~~~l~~~~~~~~~~~~~~-~l~~L~~L~L~~n~i~~lp-~~~~~l~~L~~L~Ls~n~i~~lp-~~i~~L 134 (943)
+..+.++.+-.. ...++...| + .+|+.+.+..+ ++.++ .+|.+. +|+.+.+.. .++.|+ .+|.++
T Consensus 112 ~~~l~~i~ip~~--------i~~I~~~aF~~-~~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c 179 (401)
T 4fdw_A 112 LKGYNEIILPNS--------VKSIPKDAFRN-SQIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYC 179 (401)
T ss_dssp CSSCSEEECCTT--------CCEECTTTTTT-CCCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTC
T ss_pred cCCccEEEECCc--------cCEehHhhccc-CCccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCc
Confidence 455666655332 345666666 4 36777777655 66663 456663 677777775 677774 577777
Q ss_pred cccceeecCCCcccccccHH-HhccccCceEEcCCCCCCcccccc-ccccccccccCceEeccCCCCCcccccCcccccC
Q 002284 135 YNLHTLLLEGCRELKKKCAD-MGNLIKLHHLNNSNTDSLEEMPLG-IGKLTCLLTLCNFVVGKDSGSGLRELKLLTHLCG 212 (943)
Q Consensus 135 ~~L~~L~L~~n~~~~~~p~~-~~~L~~L~~L~l~~n~~~~~~p~~-~~~L~~L~~L~~~~~~~~~~~~~~~l~~l~~L~~ 212 (943)
.+|+.+++++|. +..+|.. |. ..+|+.+.+..+ +..++.. |.++++|+.+.... +++.+
T Consensus 180 ~~L~~l~l~~n~-l~~I~~~aF~-~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~-------------~l~~I-- 240 (401)
T 4fdw_A 180 YNLKKADLSKTK-ITKLPASTFV-YAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPE-------------NVSTI-- 240 (401)
T ss_dssp TTCCEEECTTSC-CSEECTTTTT-TCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCT-------------TCCEE--
T ss_pred ccCCeeecCCCc-ceEechhhEe-ecccCEEEeCCc--hheehhhHhhCCCCCCEEecCC-------------CccCc--
Confidence 888888887764 4555544 44 577777777644 5555543 77777777663210 00000
Q ss_pred ceeecccccccCccchhhcccCCCCCCCeEEEEeecCCCCCCchhhhhHHhhhccCCCCCCcceEEEEeeCCC-----CC
Q 002284 213 TLNISKLENVKYVGDAMEAQLDGKKNLKVLMLEWTRSTNGLSSREAQTEKGVLDMLKPHRSLEQFCISGFGGK-----KF 287 (943)
Q Consensus 213 ~l~~~~l~~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~-----~~ 287 (943)
.. ..|.+ .+|+.+.+. +.++.+ .-.++..+++|+.+.+.++... .+
T Consensus 241 ------------~~----~aF~~-~~L~~i~lp-~~i~~I-----------~~~aF~~c~~L~~l~l~~~~~~~~~~~~I 291 (401)
T 4fdw_A 241 ------------GQ----EAFRE-SGITTVKLP-NGVTNI-----------ASRAFYYCPELAEVTTYGSTFNDDPEAMI 291 (401)
T ss_dssp ------------CT----TTTTT-CCCSEEEEE-TTCCEE-----------CTTTTTTCTTCCEEEEESSCCCCCTTCEE
T ss_pred ------------cc----ccccc-CCccEEEeC-CCccEE-----------ChhHhhCCCCCCEEEeCCccccCCcccEE
Confidence 00 11222 345555552 222110 0133455556666666554332 23
Q ss_pred CcccCCCCcCCeeEEEEeCCCCCCCCC-CCCCCCCCCeeEEecCcCceeeCccccCCCCCCCCCCcceeecccccccccc
Q 002284 288 PTWLGYSLFSNLVTLKFQDCSMCTSMP-SVGQLPSLKHLEVRGMSRVKRLGSEFYGNDSPIPFPCLETLHFAEMQEWEEW 366 (943)
Q Consensus 288 p~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 366 (943)
+...+ ..+++|+.+.+.+ .+...-. .|.++++|+.+.+..+ +..++...+.. + +|+.+.+.++. ....
T Consensus 292 ~~~aF-~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~-----~-~L~~l~l~~n~-~~~l 360 (401)
T 4fdw_A 292 HPYCL-EGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNN-----T-GIKEVKVEGTT-PPQV 360 (401)
T ss_dssp CTTTT-TTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT--CCEECTTSSSS-----S-CCCEEEECCSS-CCBC
T ss_pred CHHHh-hCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCC-----C-CCCEEEEcCCC-Cccc
Confidence 33333 2367777777774 3333333 6777777888877554 44444433332 5 77777777763 1111
Q ss_pred cccccCCccccCC-cccEEeecc
Q 002284 367 IPHGCSQEIEGFP-KLRELHIVR 388 (943)
Q Consensus 367 ~~~~~~~~~~~~~-~L~~L~l~~ 388 (943)
.+..+..++ .++.|++..
T Consensus 361 ----~~~~F~~~~~~l~~l~vp~ 379 (401)
T 4fdw_A 361 ----FEKVWYGFPDDITVIRVPA 379 (401)
T ss_dssp ----CCSSCCCSCTTCCEEEECG
T ss_pred ----ccccccCCCCCccEEEeCH
Confidence 123444553 667777766
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.76 E-value=5.8e-09 Score=112.35 Aligned_cols=88 Identities=17% Similarity=0.141 Sum_probs=58.8
Q ss_pred ccchhhhccCcccEEEecC-ccccccC-ccccCCCCCceeecCCCcccccc-hhhhhccccceeecCCCcccccccHH-H
Q 002284 80 SILPRLLKLQRLRVFSLRG-YLISEVP-DSIGDLSYLRYLNLSGTQIRTLP-ESVNKLYNLHTLLLEGCRELKKKCAD-M 155 (943)
Q Consensus 80 ~~~~~~~~l~~L~~L~L~~-n~i~~lp-~~~~~l~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~n~~~~~~p~~-~ 155 (943)
.+|. +..+++|++|+|++ |.++.+| ..|++|++|++|+|++|+|+.+| ..|++|++|++|+|++|.+ ..+|.. |
T Consensus 23 ~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~ 100 (347)
T 2ifg_A 23 SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL-ESLSWKTV 100 (347)
T ss_dssp TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC-SCCCSTTT
T ss_pred ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc-ceeCHHHc
Confidence 4666 55777777777775 7777764 56777777777777777777764 4667777777777777753 344433 4
Q ss_pred hccccCceEEcCCCC
Q 002284 156 GNLIKLHHLNNSNTD 170 (943)
Q Consensus 156 ~~L~~L~~L~l~~n~ 170 (943)
..+. |++|++.+|.
T Consensus 101 ~~~~-L~~l~l~~N~ 114 (347)
T 2ifg_A 101 QGLS-LQELVLSGNP 114 (347)
T ss_dssp CSCC-CCEEECCSSC
T ss_pred ccCC-ceEEEeeCCC
Confidence 4444 7777777776
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.67 E-value=2.2e-08 Score=107.74 Aligned_cols=99 Identities=15% Similarity=0.074 Sum_probs=82.3
Q ss_pred cEEEecCc-cccccCccccCCCCCceeecCC-Ccccccc-hhhhhccccceeecCCCcccccccHHHhccccCceEEcCC
Q 002284 92 RVFSLRGY-LISEVPDSIGDLSYLRYLNLSG-TQIRTLP-ESVNKLYNLHTLLLEGCRELKKKCADMGNLIKLHHLNNSN 168 (943)
Q Consensus 92 ~~L~L~~n-~i~~lp~~~~~l~~L~~L~Ls~-n~i~~lp-~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~~L~~L~l~~ 168 (943)
..++++++ .++.+|. |..+++|++|+|++ |.|+.+| ..|++|++|++|+|++|.+.+..|..|++|++|++|+|++
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 34688888 8999999 99999999999996 9999996 6799999999999999987677777899999999999999
Q ss_pred CCCCcccccc-ccccccccccCceEe
Q 002284 169 TDSLEEMPLG-IGKLTCLLTLCNFVV 193 (943)
Q Consensus 169 n~~~~~~p~~-~~~L~~L~~L~~~~~ 193 (943)
|. +..+|.+ +..+. |+.|.+..+
T Consensus 90 N~-l~~~~~~~~~~~~-L~~l~l~~N 113 (347)
T 2ifg_A 90 NA-LESLSWKTVQGLS-LQELVLSGN 113 (347)
T ss_dssp SC-CSCCCSTTTCSCC-CCEEECCSS
T ss_pred Cc-cceeCHHHcccCC-ceEEEeeCC
Confidence 99 6777766 44444 887754433
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.50 E-value=7.7e-06 Score=89.32 Aligned_cols=85 Identities=8% Similarity=0.154 Sum_probs=47.1
Q ss_pred cchhhh-ccC-cccEEEecCcccccc-CccccCCCCCceeecCCC---cccccc-hhhhhccccceeecCCCccccccc-
Q 002284 81 ILPRLL-KLQ-RLRVFSLRGYLISEV-PDSIGDLSYLRYLNLSGT---QIRTLP-ESVNKLYNLHTLLLEGCRELKKKC- 152 (943)
Q Consensus 81 ~~~~~~-~l~-~L~~L~L~~n~i~~l-p~~~~~l~~L~~L~Ls~n---~i~~lp-~~i~~L~~L~~L~L~~n~~~~~~p- 152 (943)
+....| +++ .|+...+..+ ++.+ ..+|.++.+|+.+.+..| .++.|. .+|..+.+|+.+.+..+ +..++
T Consensus 54 Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~ 130 (394)
T 4gt6_A 54 IGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDS 130 (394)
T ss_dssp ECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECT
T ss_pred cCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehh
Confidence 444444 443 3666666532 4555 355666666666666554 255553 45666666666666553 23333
Q ss_pred HHHhccccCceEEcCC
Q 002284 153 ADMGNLIKLHHLNNSN 168 (943)
Q Consensus 153 ~~~~~L~~L~~L~l~~ 168 (943)
..|..+.+|+.+.+..
T Consensus 131 ~aF~~c~~L~~i~lp~ 146 (394)
T 4gt6_A 131 EAFHHCEELDTVTIPE 146 (394)
T ss_dssp TTTTTCTTCCEEECCT
T ss_pred hhhhhhcccccccccc
Confidence 3466667777766654
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.50 E-value=8.9e-06 Score=88.84 Aligned_cols=105 Identities=17% Similarity=0.203 Sum_probs=51.0
Q ss_pred hhcccccccEEEeeccCCcccccccccCCCCccEEeccCCCCCcccCcC-CccccccceeeeccccCCccCC-CcCCCCC
Q 002284 697 RLDNKISLEVIEIVSCENLKMLPHGLHKLWHLQEIDIQDCENLVSFPEG-GLLSAKLKRLVIYGCKKLEALP-EGMHNLS 774 (943)
Q Consensus 697 ~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~-~~~l~~L~~L~l~~~~~l~~~p-~~~~~l~ 774 (943)
.|.++..|+.+.+.+... ..-...|.++++|+.+.+.. .+..++.. +..+.+|+.+++..+ +..+. ..|.++.
T Consensus 260 aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~ 334 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCE 334 (394)
T ss_dssp TTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCT
T ss_pred eeeecccccEEecccccc-eecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCC
Confidence 355556666665543211 11133455566666666643 24445443 334566666666442 33332 3455666
Q ss_pred CCCceeecCCCCCccccCCCC-CCCCcceEEecCC
Q 002284 775 SLQYLTIGGVPSLLCFTEDGL-FPTNLHSLEIDGM 808 (943)
Q Consensus 775 ~L~~L~l~~~~~l~~~~~~~~-~~~~L~~L~l~~c 808 (943)
+|+.+.+.. .++.+....+ .+++|+.+++.++
T Consensus 335 ~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 335 QLERIAIPS--SVTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp TCCEEEECT--TCCBCCGGGGTTCTTCCEEEESSC
T ss_pred CCCEEEECc--ccCEEhHhHhhCCCCCCEEEECCc
Confidence 666666642 2444433322 2355555555544
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.41 E-value=3.2e-08 Score=106.57 Aligned_cols=84 Identities=21% Similarity=0.253 Sum_probs=55.8
Q ss_pred ccCcccEEEecCcccccc-----Ccccc-CCCCCceeecCCCccccc--chhhhhccccceeecCCCcccccccHHHh--
Q 002284 87 KLQRLRVFSLRGYLISEV-----PDSIG-DLSYLRYLNLSGTQIRTL--PESVNKLYNLHTLLLEGCRELKKKCADMG-- 156 (943)
Q Consensus 87 ~l~~L~~L~L~~n~i~~l-----p~~~~-~l~~L~~L~Ls~n~i~~l--p~~i~~L~~L~~L~L~~n~~~~~~p~~~~-- 156 (943)
-++.|++|+|++|.++.. ...+. ..++|++|+|++|.|... ..-...+.+|++|+|++|.+.......+.
T Consensus 70 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~ 149 (372)
T 3un9_A 70 VLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL 149 (372)
T ss_dssp HHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred HHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence 357788888888887653 22222 236888888888887643 22335677888888888865433333332
Q ss_pred ---ccccCceEEcCCCC
Q 002284 157 ---NLIKLHHLNNSNTD 170 (943)
Q Consensus 157 ---~L~~L~~L~l~~n~ 170 (943)
..++|++|++++|.
T Consensus 150 L~~~~~~L~~L~Ls~n~ 166 (372)
T 3un9_A 150 LLHDQCQITTLRLSNNP 166 (372)
T ss_dssp HHSTTCCCCEEECCSSC
T ss_pred HHhcCCccceeeCCCCC
Confidence 35678888888887
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.36 E-value=7.9e-08 Score=103.49 Aligned_cols=106 Identities=20% Similarity=0.133 Sum_probs=56.9
Q ss_pred ccccEEeecccCCCCCCcchhccchhhh-ccCcccEEEecCcccccc-----Cccc-cCCCCCceeecCCCcccc-----
Q 002284 59 QHLRTLLPVTLLSSRPGYLARSILPRLL-KLQRLRVFSLRGYLISEV-----PDSI-GDLSYLRYLNLSGTQIRT----- 126 (943)
Q Consensus 59 ~~Lr~L~~~~~~~l~~~~~~~~~~~~~~-~l~~L~~L~L~~n~i~~l-----p~~~-~~l~~L~~L~Ls~n~i~~----- 126 (943)
++|+.|.+.+ |.+.......+. .+++|++|+|++|.++.. ...+ ...++|++|+|++|.|+.
T Consensus 101 ~~L~~L~Ls~------n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~ 174 (372)
T 3un9_A 101 HALDEVNLAS------CQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAV 174 (372)
T ss_dssp SCEEEEECTT------CCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHH
T ss_pred CCceEEEecC------CCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHH
Confidence 4566665432 333333344444 456666666666665432 1112 234566666666666653
Q ss_pred cchhhhhccccceeecCCCcccc----cccHHHhccccCceEEcCCCC
Q 002284 127 LPESVNKLYNLHTLLLEGCRELK----KKCADMGNLIKLHHLNNSNTD 170 (943)
Q Consensus 127 lp~~i~~L~~L~~L~L~~n~~~~----~~p~~~~~L~~L~~L~l~~n~ 170 (943)
++..+...++|++|+|++|.+.. .++..+...++|++|++++|.
T Consensus 175 l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~ 222 (372)
T 3un9_A 175 LMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG 222 (372)
T ss_dssp HHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC
T ss_pred HHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC
Confidence 34444556666666666665322 123445556666666666666
No 151
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.29 E-value=6.3e-07 Score=83.03 Aligned_cols=89 Identities=13% Similarity=0.163 Sum_probs=51.7
Q ss_pred CCcceEEecCCcchhccccccCCCCCCCccEEEecCCCCcCcccCcccccccCCC---CCCccEEEeecCCCCcccc--c
Q 002284 798 TNLHSLEIDGMKIWKSLMQLGGFHRYTSLRRLAISGCDEDMVSFPLEDIRLGTTL---PACLTQLEIFNFPNLERLS--S 872 (943)
Q Consensus 798 ~~L~~L~l~~c~~l~~~~~~~~~~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~l~~l~--~ 872 (943)
..|++||+++|........ .+..+++|++|++++| ..+++++...-... .++|++|++++|++++.-. .
T Consensus 61 ~~L~~LDLs~~~Itd~GL~--~L~~~~~L~~L~L~~C----~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~ 134 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFD--HMEGLQYVEKIRLCKC----HYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIA 134 (176)
T ss_dssp CCEEEEEEESCCCCGGGGG--GGTTCSCCCEEEEESC----TTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHH
T ss_pred ceEeEEeCcCCCccHHHHH--HhcCCCCCCEEEeCCC----CccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHH
Confidence 4677777777773332222 3567888888888887 33454443321111 2356777777777666532 1
Q ss_pred ccCCCCCCeEeecCCCCCcc
Q 002284 873 SICDQNLTSLKLTNCPKLKY 892 (943)
Q Consensus 873 ~~~~~~L~~L~l~~C~~L~~ 892 (943)
...+++|++|+|++|+.++.
T Consensus 135 L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 135 LHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GGGCTTCCEEEEESCTTCCC
T ss_pred HhcCCCCCEEECCCCCCCCc
Confidence 12466666677777666665
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.16 E-value=1.4e-06 Score=92.82 Aligned_cols=82 Identities=20% Similarity=0.156 Sum_probs=43.1
Q ss_pred hcccccccEEEeeccCC---------cccccccccCCCCccEEeccCCCCCcccCcCCccccccceeeeccccCCccCCC
Q 002284 698 LDNKISLEVIEIVSCEN---------LKMLPHGLHKLWHLQEIDIQDCENLVSFPEGGLLSAKLKRLVIYGCKKLEALPE 768 (943)
Q Consensus 698 ~~~l~~L~~L~l~~~~~---------~~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~p~ 768 (943)
...+++|+.|.+.+... .+.++..+..+|+|++|+|++|... .++. + ..++|++|++..|........
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHH
Confidence 44566777776654321 1123344456677777777776322 2332 2 256777777766653222111
Q ss_pred cC--CCCCCCCceeec
Q 002284 769 GM--HNLSSLQYLTIG 782 (943)
Q Consensus 769 ~~--~~l~~L~~L~l~ 782 (943)
.+ ..+|+|++|+++
T Consensus 212 ~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHHHSBCTTCCEEEEE
T ss_pred HHHHccCCCCcEEEEe
Confidence 22 256677777664
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.12 E-value=6.4e-06 Score=87.67 Aligned_cols=64 Identities=20% Similarity=0.250 Sum_probs=31.8
Q ss_pred cchhccCCCCcCeeeccCCCCCcccCCCCCCCCccEEEEecCCCCCcCccccccCCCCCccEEEee
Q 002284 532 LPKSLLSLSSLTEMRIHNCSSLVSFPEAVLPSQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIR 597 (943)
Q Consensus 532 ~~~~~~~l~~L~~L~L~~n~~l~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~ 597 (943)
+...+..+|+|+.|+|++|... .++.. ..++|++|++..|..............+|+|++|+|+
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eeccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 4445556677777777766322 22221 2456666666655522211111111246666666664
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.11 E-value=0.00045 Score=74.87 Aligned_cols=124 Identities=10% Similarity=0.184 Sum_probs=68.4
Q ss_pred cCCCCceeeeeEeecCccccccchhhhhhcccccCeEEeecCCCcccchhhhhhhcCccceeceEEEecCCCcCccch-h
Q 002284 457 QLPKLDELDISIIIDGLSYIWQNETQLLQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPK-S 535 (943)
Q Consensus 457 ~l~~L~~L~Ls~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~ 535 (943)
...+|+.+.+. .+++.++...|.++.+|+.+.+..+ ++.+.... |.++ +|+.+.+-.+ +..++. +
T Consensus 44 ~~~~i~~v~ip------~~vt~Ig~~aF~~C~~L~~I~lp~~--v~~Ig~~a---F~~c-~l~~i~~~~~--l~~I~~~a 109 (379)
T 4h09_A 44 DRDRISEVRVN------SGITSIGEANFNSCYNMTKVTVAST--VTSIGDGA---FADT-KLQSYTGMER--VKKFGDYV 109 (379)
T ss_dssp GGGGCSEEEEC------TTEEEECTTTTTTCTTCCEEEECTT--CCEECTTT---TTTC-CCCEEEECTT--CCEECTTT
T ss_pred cccCCEEEEeC------CCccChHHHHhhCCCCCCEEEeCCc--ceEechhh---hcCC-CCceEECCce--eeEeccce
Confidence 44556666665 4566777777888888888888643 66666655 6665 5666666543 333333 3
Q ss_pred ccCCCCcCeeeccCCCCCcccCCCCC-CCCccEEEEecCCCCCcCccccccCCCCCccEEEeecCC
Q 002284 536 LLSLSSLTEMRIHNCSSLVSFPEAVL-PSQLRVISIWDSGALKFLPEAWMLDNNSSLEILDIRHCH 600 (943)
Q Consensus 536 ~~~l~~L~~L~L~~n~~l~~~~~~~~-~~~L~~L~l~~~~~l~~~~~~~~~~~l~~L~~L~l~~n~ 600 (943)
|.. .+|+.+.+.++ +..+....+ -.+++.+.+..+ +..+.... +..+..++...+..+.
T Consensus 110 F~~-~~L~~i~lp~~--~~~i~~~~F~~~~l~~~~~~~~--v~~i~~~~-f~~~~~l~~~~~~~~~ 169 (379)
T 4h09_A 110 FQG-TDLDDFEFPGA--TTEIGNYIFYNSSVKRIVIPKS--VTTIKDGI-GYKAENLEKIEVSSNN 169 (379)
T ss_dssp TTT-CCCSEEECCTT--CCEECTTTTTTCCCCEEEECTT--CCEECSCT-TTTCTTCCEEEECTTC
T ss_pred ecc-CCcccccCCCc--cccccccccccceeeeeeccce--eeccccch-hccccccccccccccc
Confidence 433 46777777654 333333332 234555544332 22222221 3356666666665443
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.10 E-value=0.00057 Score=73.99 Aligned_cols=80 Identities=9% Similarity=0.206 Sum_probs=46.2
Q ss_pred hhhhcccccCeEEeecCCCcccchhhhhhhcCccceeceEEEecCCCcCcc-chhccCCCCcCeeeccCCCCCcccCCCC
Q 002284 482 QLLQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINCQDLEKL-PKSLLSLSSLTEMRIHNCSSLVSFPEAV 560 (943)
Q Consensus 482 ~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~L~~n~~l~~~~~~~ 560 (943)
.|+....+|+++.+.. .++.++... |.++.+|+.+.+..+ +..+ ..+|.++ +|+.+.+..+ ++.+....
T Consensus 40 ~~~~~~~~i~~v~ip~--~vt~Ig~~a---F~~C~~L~~I~lp~~--v~~Ig~~aF~~c-~l~~i~~~~~--l~~I~~~a 109 (379)
T 4h09_A 40 PWYKDRDRISEVRVNS--GITSIGEAN---FNSCYNMTKVTVAST--VTSIGDGAFADT-KLQSYTGMER--VKKFGDYV 109 (379)
T ss_dssp TTGGGGGGCSEEEECT--TEEEECTTT---TTTCTTCCEEEECTT--CCEECTTTTTTC-CCCEEEECTT--CCEECTTT
T ss_pred cccccccCCEEEEeCC--CccChHHHH---hhCCCCCCEEEeCCc--ceEechhhhcCC-CCceEECCce--eeEeccce
Confidence 4556667788877764 467776665 777788888877643 2333 3355554 5666665433 44444333
Q ss_pred C-CCCccEEEEe
Q 002284 561 L-PSQLRVISIW 571 (943)
Q Consensus 561 ~-~~~L~~L~l~ 571 (943)
+ ..+|+.+.+.
T Consensus 110 F~~~~L~~i~lp 121 (379)
T 4h09_A 110 FQGTDLDDFEFP 121 (379)
T ss_dssp TTTCCCSEEECC
T ss_pred eccCCcccccCC
Confidence 3 2345555554
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.06 E-value=3.7e-06 Score=84.45 Aligned_cols=79 Identities=24% Similarity=0.220 Sum_probs=39.6
Q ss_pred cCCCCCceeecCCCccccc---chhhhhccccceeecCCCcccccccHHHhccc--cCceEEcCCCCCCccccc------
Q 002284 109 GDLSYLRYLNLSGTQIRTL---PESVNKLYNLHTLLLEGCRELKKKCADMGNLI--KLHHLNNSNTDSLEEMPL------ 177 (943)
Q Consensus 109 ~~l~~L~~L~Ls~n~i~~l---p~~i~~L~~L~~L~L~~n~~~~~~p~~~~~L~--~L~~L~l~~n~~~~~~p~------ 177 (943)
.++++|++|+|++|+|+.+ |..++.+++|++|+|++|.+.+. ..+..+. +|++|++++|.+.+.+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 3455566666666655543 23445566666666666543222 2233333 566666666654443331
Q ss_pred -cccccccccccC
Q 002284 178 -GIGKLTCLLTLC 189 (943)
Q Consensus 178 -~~~~L~~L~~L~ 189 (943)
.+..+++|+.|+
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 144555555554
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.96 E-value=2.1e-06 Score=79.53 Aligned_cols=83 Identities=12% Similarity=0.069 Sum_probs=44.9
Q ss_pred ccceeeeccccCCccCCCcCCCCCCCCceeecCCCCCccccCCCC-C----CCCcceEEecCCcchhccccccCCCCCCC
Q 002284 751 KLKRLVIYGCKKLEALPEGMHNLSSLQYLTIGGVPSLLCFTEDGL-F----PTNLHSLEIDGMKIWKSLMQLGGFHRYTS 825 (943)
Q Consensus 751 ~L~~L~l~~~~~l~~~p~~~~~l~~L~~L~l~~~~~l~~~~~~~~-~----~~~L~~L~l~~c~~l~~~~~~~~~~~l~~ 825 (943)
+|++||+++|.....--..+..+++|++|++++|..+++..-... . .++|++|++++|..+++.... .+.++++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-~L~~~~~ 140 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII-ALHHFRN 140 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH-HGGGCTT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH-HHhcCCC
Confidence 566666666653322223345666777777777766544321111 0 135666666666666554432 2445666
Q ss_pred ccEEEecCC
Q 002284 826 LRRLAISGC 834 (943)
Q Consensus 826 L~~L~l~~c 834 (943)
|++|+|++|
T Consensus 141 L~~L~L~~c 149 (176)
T 3e4g_A 141 LKYLFLSDL 149 (176)
T ss_dssp CCEEEEESC
T ss_pred CCEEECCCC
Confidence 666666665
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.95 E-value=2e-06 Score=86.47 Aligned_cols=79 Identities=22% Similarity=0.301 Sum_probs=64.9
Q ss_pred ccCcccEEEecCcccccc---CccccCCCCCceeecCCCcccccchhhhhcc--ccceeecCCCccccccc-------HH
Q 002284 87 KLQRLRVFSLRGYLISEV---PDSIGDLSYLRYLNLSGTQIRTLPESVNKLY--NLHTLLLEGCRELKKKC-------AD 154 (943)
Q Consensus 87 ~l~~L~~L~L~~n~i~~l---p~~~~~l~~L~~L~Ls~n~i~~lp~~i~~L~--~L~~L~L~~n~~~~~~p-------~~ 154 (943)
++++|++|+|++|.++.+ |..+..+++|++|+|++|.|+.+ ..+..+. +|++|+|++|...+..| ..
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i 246 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI 246 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence 789999999999998765 46677899999999999999988 4455555 99999999998766554 34
Q ss_pred HhccccCceEEc
Q 002284 155 MGNLIKLHHLNN 166 (943)
Q Consensus 155 ~~~L~~L~~L~l 166 (943)
+..+++|+.||-
T Consensus 247 l~~~P~L~~LDg 258 (267)
T 3rw6_A 247 RERFPKLLRLDG 258 (267)
T ss_dssp HHHCTTCCEESS
T ss_pred HHHCcccCeECC
Confidence 788999999973
No 159
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.83 E-value=7e-06 Score=78.53 Aligned_cols=84 Identities=15% Similarity=0.119 Sum_probs=44.9
Q ss_pred ccCcccEEEecCccccc-----cCccccCCCCCceeecCCCcccc-----cchhhhhccccceeec--CCCccccc----
Q 002284 87 KLQRLRVFSLRGYLISE-----VPDSIGDLSYLRYLNLSGTQIRT-----LPESVNKLYNLHTLLL--EGCRELKK---- 150 (943)
Q Consensus 87 ~l~~L~~L~L~~n~i~~-----lp~~~~~l~~L~~L~Ls~n~i~~-----lp~~i~~L~~L~~L~L--~~n~~~~~---- 150 (943)
..+.|++|+|++|.++. +...+...+.|++|+|++|.|.. +...+...+.|++|+| ++|.+...
T Consensus 63 ~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~ 142 (185)
T 1io0_A 63 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEME 142 (185)
T ss_dssp TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHH
T ss_pred hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHH
Confidence 45566666666666542 23344444566666666666552 3444555556666666 55543221
Q ss_pred ccHHHhccccCceEEcCCCC
Q 002284 151 KCADMGNLIKLHHLNNSNTD 170 (943)
Q Consensus 151 ~p~~~~~L~~L~~L~l~~n~ 170 (943)
+...+...+.|++|++++|.
T Consensus 143 l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 143 IANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHhCCCcCEEeccCCC
Confidence 22334444566666666665
No 160
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.75 E-value=2.2e-05 Score=74.98 Aligned_cols=105 Identities=17% Similarity=0.149 Sum_probs=80.1
Q ss_pred hccCcccEEEecCc-cccc-----cCccccCCCCCceeecCCCcccc-----cchhhhhccccceeecCCCccccc----
Q 002284 86 LKLQRLRVFSLRGY-LISE-----VPDSIGDLSYLRYLNLSGTQIRT-----LPESVNKLYNLHTLLLEGCRELKK---- 150 (943)
Q Consensus 86 ~~l~~L~~L~L~~n-~i~~-----lp~~~~~l~~L~~L~Ls~n~i~~-----lp~~i~~L~~L~~L~L~~n~~~~~---- 150 (943)
...+.|++|+|++| .++. +...+...++|++|+|++|.|.. +...+...+.|++|+|++|.+...
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 37899999999999 7753 45667778999999999999873 455677778999999999975432
Q ss_pred ccHHHhccccCceEEc--CCCCCCcc-----ccccccccccccccCce
Q 002284 151 KCADMGNLIKLHHLNN--SNTDSLEE-----MPLGIGKLTCLLTLCNF 191 (943)
Q Consensus 151 ~p~~~~~L~~L~~L~l--~~n~~~~~-----~p~~~~~L~~L~~L~~~ 191 (943)
+...+...+.|++|++ ++|. ++. +...+...++|++|+..
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~ 159 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYH 159 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred HHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEecc
Confidence 4556777889999999 8888 443 23345556788888543
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.60 E-value=0.0024 Score=56.35 Aligned_cols=54 Identities=19% Similarity=0.192 Sum_probs=43.1
Q ss_pred cEEEecCcccc--ccCccccCCCCCceeecCCCcccccc-hhhhhccccceeecCCCcc
Q 002284 92 RVFSLRGYLIS--EVPDSIGDLSYLRYLNLSGTQIRTLP-ESVNKLYNLHTLLLEGCRE 147 (943)
Q Consensus 92 ~~L~L~~n~i~--~lp~~~~~l~~L~~L~Ls~n~i~~lp-~~i~~L~~L~~L~L~~n~~ 147 (943)
++++.+++.++ .+|..+. .+|++|+|++|+|+.|| ..|..+.+|++|+|++|..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 47888888888 8887654 46889999999999996 4678888888888888854
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.51 E-value=0.036 Score=52.21 Aligned_cols=83 Identities=13% Similarity=0.090 Sum_probs=50.5
Q ss_pred ccCcccEEEecCc-cccc-----cCccccCCCCCceeecCCCccc-----ccchhhhhccccceeecCCCccccc----c
Q 002284 87 KLQRLRVFSLRGY-LISE-----VPDSIGDLSYLRYLNLSGTQIR-----TLPESVNKLYNLHTLLLEGCRELKK----K 151 (943)
Q Consensus 87 ~l~~L~~L~L~~n-~i~~-----lp~~~~~l~~L~~L~Ls~n~i~-----~lp~~i~~L~~L~~L~L~~n~~~~~----~ 151 (943)
+-+.|+.|+|+++ .|+. +-+.+..-+.|+.|+|++|.|. .|-+.+..=+.|++|+|++|.+... +
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 4567777777764 5542 3445555667777777777776 3344555567777777777753322 2
Q ss_pred cHHHhccccCceEEcCCC
Q 002284 152 CADMGNLIKLHHLNNSNT 169 (943)
Q Consensus 152 p~~~~~L~~L~~L~l~~n 169 (943)
-+.+..-+.|++|+++++
T Consensus 119 a~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHTTTTCCCSEEECCCC
T ss_pred HHHHhhCCceeEEECCCC
Confidence 233444456777777654
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.30 E-value=0.033 Score=48.93 Aligned_cols=53 Identities=15% Similarity=0.192 Sum_probs=43.5
Q ss_pred ceeecCCCccc--ccchhhhhccccceeecCCCcccccccH-HHhccccCceEEcCCCC
Q 002284 115 RYLNLSGTQIR--TLPESVNKLYNLHTLLLEGCRELKKKCA-DMGNLIKLHHLNNSNTD 170 (943)
Q Consensus 115 ~~L~Ls~n~i~--~lp~~i~~L~~L~~L~L~~n~~~~~~p~-~~~~L~~L~~L~l~~n~ 170 (943)
..++-++++++ .+|..+. .+|++|+|++|. +..+|. .|..+++|++|+|++|.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCC
Confidence 47888999998 8886543 579999999997 555554 58999999999999997
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.24 E-value=0.061 Score=50.67 Aligned_cols=110 Identities=17% Similarity=0.154 Sum_probs=76.4
Q ss_pred cccccccEEeecccCCCCCCcchh----ccchhhhccCcccEEEecCccccc-----cCccccCCCCCceeecCCCccc-
Q 002284 56 YDIQHLRTLLPVTLLSSRPGYLAR----SILPRLLKLQRLRVFSLRGYLISE-----VPDSIGDLSYLRYLNLSGTQIR- 125 (943)
Q Consensus 56 ~~~~~Lr~L~~~~~~~l~~~~~~~----~~~~~~~~l~~L~~L~L~~n~i~~-----lp~~~~~l~~L~~L~Ls~n~i~- 125 (943)
.+-+.|+.|.+..+. .+.. .+-..+..-+.|+.|+|++|.|+. +-+.+..=+.|++|+|++|.|.
T Consensus 38 ~~n~~L~~L~L~~nn-----~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 38 EDDTDLKEVNINNMK-----RVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp TTCSSCCEEECTTCC-----SSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred hcCCCccEEECCCCC-----CCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence 346788998775421 2221 223333366899999999999874 3455666688999999999998
Q ss_pred ----ccchhhhhccccceeecCCCcc--cc-----cccHHHhccccCceEEcCCCC
Q 002284 126 ----TLPESVNKLYNLHTLLLEGCRE--LK-----KKCADMGNLIKLHHLNNSNTD 170 (943)
Q Consensus 126 ----~lp~~i~~L~~L~~L~L~~n~~--~~-----~~p~~~~~L~~L~~L~l~~n~ 170 (943)
.|-+++..=+.|++|+|++|.. ++ .+.+.+..-+.|+.|+++.+.
T Consensus 113 ~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 113 ELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 3445566667799999987532 23 234456677899999998776
No 165
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=59.28 E-value=1.3 Score=49.80 Aligned_cols=18 Identities=0% Similarity=0.137 Sum_probs=16.7
Q ss_pred CchhHHHHHHHhhccceE
Q 002284 1 MHDLVNDLAQWAAGEMYF 18 (943)
Q Consensus 1 mHDl~~dla~~~~~~e~~ 18 (943)
|||+|||+|+++++++|.
T Consensus 456 mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 456 IDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp CCHHHHHHHHTTSCTHHH
T ss_pred eChHHHHHHHHHHHHHHH
Confidence 999999999999998875
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=50.73 E-value=19 Score=29.31 Aligned_cols=47 Identities=15% Similarity=0.189 Sum_probs=30.9
Q ss_pred ccccchhhhhhcccccCeEEeecCCCcccchhhhhhhcCccceeceEEEecC
Q 002284 475 YIWQNETQLLQDIATLKRLKIERCPKLQFLEEEDQWQFGLSFRLEHLELINC 526 (943)
Q Consensus 475 ~~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~ 526 (943)
++..+....|.++.+|+++.|-.. ++.+.... |.++.+|+.+.+.+.
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~--v~~Ig~~a---F~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN--IGLLYDGM---FSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT--SSCCCTTS---STTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc--hheEcHHH---HhccCCccEEEEcCC
Confidence 345556667777777777777653 56666555 777777777777653
No 167
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=22.71 E-value=67 Score=25.92 Aligned_cols=46 Identities=4% Similarity=-0.057 Sum_probs=27.3
Q ss_pred cccchhhhhhhcCccceeceEEEecCCCcCccchhccCCCCcCeeeccCC
Q 002284 501 LQFLEEEDQWQFGLSFRLEHLELINCQDLEKLPKSLLSLSSLTEMRIHNC 550 (943)
Q Consensus 501 l~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~n 550 (943)
++.+.... |.++.+|+.+.|-.. ....-..+|.++.+|+.+.+.+.
T Consensus 8 vt~I~~~a---F~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 8 VVGMDKSL---FAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCSSCSCT---TTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred cCEecHHH---hcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 44444444 777777777777653 32333446677777777777653
Done!