BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 002285
(942 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1UQU|A Chain A, Trehalose-6-Phosphate From E. Coli Bound With Udp-Glucose.
pdb|1UQU|B Chain B, Trehalose-6-Phosphate From E. Coli Bound With Udp-Glucose.
pdb|1UQT|A Chain A, Trehalose-6-Phosphate From E. Coli Bound With Udp-2-Fluoro
Glucose.
pdb|1UQT|B Chain B, Trehalose-6-Phosphate From E. Coli Bound With Udp-2-Fluoro
Glucose
Length = 482
Score = 255 bits (651), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 158/483 (32%), Positives = 248/483 (51%), Gaps = 25/483 (5%)
Query: 106 RLLVVANRLPVSAVRRGEDSWQLEISVGGLVSALLG-VREFEARWIGWAGVNVPDEIGQK 164
RL+VV+NR+ + S GGL +LG ++ W GW+G ++ K
Sbjct: 3 RLVVVSNRIAPPD--------EHAASAGGLAVGILGALKAAGGLWFGWSGETGNEDQPLK 54
Query: 165 ALTKALAEKRCIPVFLDEETVHQYYNGYCNNMLWPLFHYLGLPQEDRLATTRSFQSQFDA 224
+ K L E+ + +YYN + N +LWP FHY RL + + +D
Sbjct: 55 KVKKG--NITWASFNLSEQDLDEYYNQFSNAVLWPAFHY-------RLDLVQFQRPAWDG 105
Query: 225 YKRANQMFAKVVNNIYEEGDVVWCHDYHLMFLPQCLKEYNNNMKVGWFLHTPFPSSEIHR 284
Y R N + A + + ++ D++W HDYHL+ L++ N ++G+FLH PFP+ EI
Sbjct: 106 YLRVNALLADKLLPLLQDDDIIWIHDYHLLPFAHELRKRGVNNRIGFFLHIPFPTPEIFN 165
Query: 285 TLPSRTELLRSVLAADLVGFHTYDYARHFVSACTRILGLEG-TPEGVEDQGRLTRVAAFP 343
LP+ LL + DL+GF T + F+ + + + + + G+ R +P
Sbjct: 166 ALPTYDTLLEQLCDYDLLGFQTENDRLAFLDCLSNLTRVTTRSAKSHTAWGKAFRTEVYP 225
Query: 344 IGIDSDRFVRALELPQVQDHINELKERFAGRKVMLGVDRLDMIKGIPQKILAFEKFLEEN 403
IGI+ + P + + +LK + + V+RLD KG+P++ LA+E LE+
Sbjct: 226 IGIEPKEIAKQAAGP-LPPKLAQLKAELKNVQNIFSVERLDYSKGLPERFLAYEALLEKY 284
Query: 404 PSWRDKVVLIQIAVPTRTDVPEYQKLTSQVHEIVGRINGRYGTLTTVPIHHLDRSLDFHA 463
P K+ QIA +R DV YQ + Q+ GRING+YG L P+++L++ D
Sbjct: 285 PQHHGKIRYTQIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKL 344
Query: 464 LCALYAITDVALVTSLRDGMNLVSYEFVACQ-ASKKGVLILSEFAGAAQSLGAGAILVNP 522
L ++ +DV LVT LRDGMNLV+ E+VA Q + GVL+LS+FAGAA L A++VNP
Sbjct: 345 LMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANEL-TSALIVNP 403
Query: 523 WNITEVASSIGYALNMPADEREKRHLHNFMHVTTHTSQEWAATFVSELNDTI---VEAQI 579
++ EVA+++ AL M ER RH + + W F+S+L + E+Q
Sbjct: 404 YDRDEVAAALDRALTMSLAERISRHAEMLDVIVKNDINHWQECFISDLKQIVPRSAESQQ 463
Query: 580 RTR 582
R +
Sbjct: 464 RDK 466
>pdb|2WTX|A Chain A, Insight Into The Mechanism Of Enzymatic Glycosyltransfer
With Retention Through The Synthesis And Analysis Of
Bisubstrate Glycomimetics Of Trehalose-6-Phosphate
Synthase
pdb|2WTX|B Chain B, Insight Into The Mechanism Of Enzymatic Glycosyltransfer
With Retention Through The Synthesis And Analysis Of
Bisubstrate Glycomimetics Of Trehalose-6-Phosphate
Synthase
pdb|2WTX|C Chain C, Insight Into The Mechanism Of Enzymatic Glycosyltransfer
With Retention Through The Synthesis And Analysis Of
Bisubstrate Glycomimetics Of Trehalose-6-Phosphate
Synthase
pdb|2WTX|D Chain D, Insight Into The Mechanism Of Enzymatic Glycosyltransfer
With Retention Through The Synthesis And Analysis Of
Bisubstrate Glycomimetics Of Trehalose-6-Phosphate
Synthase
Length = 474
Score = 255 bits (651), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 158/483 (32%), Positives = 248/483 (51%), Gaps = 25/483 (5%)
Query: 106 RLLVVANRLPVSAVRRGEDSWQLEISVGGLVSALLG-VREFEARWIGWAGVNVPDEIGQK 164
RL+VV+NR+ + S GGL +LG ++ W GW+G ++ K
Sbjct: 3 RLVVVSNRIAPPD--------EHAASAGGLAVGILGALKAAGGLWFGWSGETGNEDQPLK 54
Query: 165 ALTKALAEKRCIPVFLDEETVHQYYNGYCNNMLWPLFHYLGLPQEDRLATTRSFQSQFDA 224
+ K L E+ + +YYN + N +LWP FHY RL + + +D
Sbjct: 55 KVKKG--NITWASFNLSEQDLDEYYNQFSNAVLWPAFHY-------RLDLVQFQRPAWDG 105
Query: 225 YKRANQMFAKVVNNIYEEGDVVWCHDYHLMFLPQCLKEYNNNMKVGWFLHTPFPSSEIHR 284
Y R N + A + + ++ D++W HDYHL+ L++ N ++G+FLH PFP+ EI
Sbjct: 106 YLRVNALLADKLLPLLQDDDIIWIHDYHLLPFAHELRKRGVNNRIGFFLHIPFPTPEIFN 165
Query: 285 TLPSRTELLRSVLAADLVGFHTYDYARHFVSACTRILGLEG-TPEGVEDQGRLTRVAAFP 343
LP+ LL + DL+GF T + F+ + + + + + G+ R +P
Sbjct: 166 ALPTYDTLLEQLCDYDLLGFQTENDRLAFLDCLSNLTRVTTRSAKSHTAWGKAFRTEVYP 225
Query: 344 IGIDSDRFVRALELPQVQDHINELKERFAGRKVMLGVDRLDMIKGIPQKILAFEKFLEEN 403
IGI+ + P + + +LK + + V+RLD KG+P++ LA+E LE+
Sbjct: 226 IGIEPKEIAKQAAGP-LPPKLAQLKAELKNVQNIFSVERLDYSKGLPERFLAYEALLEKY 284
Query: 404 PSWRDKVVLIQIAVPTRTDVPEYQKLTSQVHEIVGRINGRYGTLTTVPIHHLDRSLDFHA 463
P K+ QIA +R DV YQ + Q+ GRING+YG L P+++L++ D
Sbjct: 285 PQHHGKIRYTQIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKL 344
Query: 464 LCALYAITDVALVTSLRDGMNLVSYEFVACQ-ASKKGVLILSEFAGAAQSLGAGAILVNP 522
L ++ +DV LVT LRDGMNLV+ E+VA Q + GVL+LS+FAGAA L A++VNP
Sbjct: 345 LMKIFRYSDVGLVTPLRDGMNLVAKEYVAAQDPANPGVLVLSQFAGAANEL-TSALIVNP 403
Query: 523 WNITEVASSIGYALNMPADEREKRHLHNFMHVTTHTSQEWAATFVSELNDTI---VEAQI 579
++ EVA+++ AL M ER RH + + W F+S+L + E+Q
Sbjct: 404 YDRDEVAAALDRALTMSLAERISRHAEMLDVIVKNDINHWQECFISDLKQIVPRSAESQQ 463
Query: 580 RTR 582
R +
Sbjct: 464 RDK 466
>pdb|1GZ5|A Chain A, Trehalose-6-Phosphate Synthase. Otsa
pdb|1GZ5|B Chain B, Trehalose-6-Phosphate Synthase. Otsa
pdb|1GZ5|C Chain C, Trehalose-6-Phosphate Synthase. Otsa
pdb|1GZ5|D Chain D, Trehalose-6-Phosphate Synthase. Otsa
Length = 456
Score = 249 bits (637), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 153/472 (32%), Positives = 241/472 (51%), Gaps = 22/472 (4%)
Query: 106 RLLVVANRLPVSAVRRGEDSWQLEISVGGLVSALLG-VREFEARWIGWAGVNVPDEIGQK 164
RL+VV+NR+ + S GGL +LG ++ W GW+G ++ K
Sbjct: 2 RLVVVSNRIAPPD--------EHAASAGGLAVGILGALKAAGGLWFGWSGETGNEDQPLK 53
Query: 165 ALTKALAEKRCIPVFLDEETVHQYYNGYCNNMLWPLFHYLGLPQEDRLATTRSFQSQFDA 224
+ K L E+ + +YYN + N +LWP FHY RL + + +D
Sbjct: 54 KVKKG--NITWASFNLSEQDLDEYYNQFSNAVLWPAFHY-------RLDLVQFQRPAWDG 104
Query: 225 YKRANQMFAKVVNNIYEEGDVVWCHDYHLMFLPQCLKEYNNNMKVGWFLHTPFPSSEIHR 284
Y R N + A + + ++ D++W HDYHL+ L++ N ++G+FLH PFP+ EI
Sbjct: 105 YLRVNALLADKLLPLLQDDDIIWIHDYHLLPFAHELRKRGVNNRIGFFLHIPFPTPEIFN 164
Query: 285 TLPSRTELLRSVLAADLVGFHTYDYARHFVSACTRILGLEG-TPEGVEDQGRLTRVAAFP 343
LP+ LL + DL+GF T + F+ + + + + + G+ R +P
Sbjct: 165 ALPTYDTLLEQLCDYDLLGFQTENDRLAFLDCLSNLTRVTTRSAKSHTAWGKAFRTEVYP 224
Query: 344 IGIDSDRFVRALELPQVQDHINELKERFAGRKVMLGVDRLDMIKGIPQKILAFEKFLEEN 403
IGI+ + P + + +LK + + V+RLD KG+P++ LA+E LE+
Sbjct: 225 IGIEPKEIAKQAAGP-LPPKLAQLKAELKNVQNIFSVERLDYSKGLPERFLAYEALLEKY 283
Query: 404 PSWRDKVVLIQIAVPTRTDVPEYQKLTSQVHEIVGRINGRYGTLTTVPIHHLDRSLDFHA 463
P K+ QIA +R DV YQ + Q+ GRING+YG L P+++L++ D
Sbjct: 284 PQHHGKIRYTQIAPTSRGDVQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKL 343
Query: 464 LCALYAITDVALVTSLRDGMNLVSYEFVACQ-ASKKGVLILSEFAGAAQSLGAGAILVNP 522
L ++ +DV LVT LRDG NLV+ E+VA Q + GVL+LS+FAGAA L A++VNP
Sbjct: 344 LXKIFRYSDVGLVTPLRDGXNLVAKEYVAAQDPANPGVLVLSQFAGAANEL-TSALIVNP 402
Query: 523 WNITEVASSIGYALNMPADEREKRHLHNFMHVTTHTSQEWAATFVSELNDTI 574
++ EVA+++ AL ER RH + + W F+S+L +
Sbjct: 403 YDRDEVAAALDRALTXSLAERISRHAEXLDVIVKNDINHWQECFISDLKQIV 454
>pdb|3T5T|A Chain A, Vall From Streptomyces Hygroscopicus In Apo Form
pdb|3T5T|B Chain B, Vall From Streptomyces Hygroscopicus In Apo Form
Length = 496
Score = 92.8 bits (229), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 105/418 (25%), Positives = 174/418 (41%), Gaps = 32/418 (7%)
Query: 125 SWQLEISVGGLVSALLGVREFEARWIGWAGVNVPDEIGQKAL-----TKALAEKRCIPVF 179
+W G +V+ GV WI A + D+ AL T L R I V
Sbjct: 27 AWLAPGGTGNVVAEQAGV--LNISWI--ASADSEDDRRASALNPDGVTMELHSGREILVR 82
Query: 180 L---DEETVHQYYNGYCNNMLWPLFHYLGLPQEDRLATTRSFQSQFDAYKRANQMFAK-V 235
L D N N++W +Y G + + + + + + R + FA +
Sbjct: 83 LIRHDPAVFRNVQNFMTANLMWAANNY-GWDRWTQPSFGSDAREGWADFGRFTRDFADAI 141
Query: 236 VNNIYEEGDVVW-CHDYHLMFLPQCLKEYNNNMKVGWFLHTPFPSSEIHRTLPS--RTEL 292
+ + + D V+ HDY L+ +P L+E + + F+H P+PS++ R LP RT +
Sbjct: 142 LKSSAQSADPVYLVHDYQLVGVPALLREQRPDAPILLFVHIPWPSADYWRILPKEIRTGI 201
Query: 293 LRSVLAADLVGFHTYDYARHFVSACTRILG---LEGTPEGVEDQGRLTRVAAFPIGIDSD 349
L +L A +GF + R+F+ + +L ++ VE +G TR+ P+G
Sbjct: 202 LHGMLPATTIGFFADRWCRNFLESVADLLPDARIDREAMTVEWRGHRTRLRTMPLGYSP- 260
Query: 350 RFVRALELPQVQDHINELKERFAGRKVMLGVDRLDMIKGIPQKILAFEKFLEENPSWRDK 409
PQ+ + I E + G ++++ R D IK + + AF L +K
Sbjct: 261 -LTLDGRNPQLPEGIEEWAD---GHRLVVHSGRTDPIKNAERAVRAF--VLAARGGGLEK 314
Query: 410 VVLIQIAVPTRTDVPEYQKLTSQVHEIVGRINGRYGTLTTVPIHHLDRSLDFHALCALYA 469
++ P R VP +V V N G+ T +D D + A +
Sbjct: 315 TRMLVRMNPNRLYVPANADYVHRVETAVAEANAELGSDTV----RIDNDNDVNHTIACFR 370
Query: 470 ITDVALVTSLRDGMNLVSYEFVACQASKKGVLILSEFAGAAQSLGAGAILVNPWNITE 527
D+ + S DG NL ++E + +ILSE GAA+ LG VNP+++ E
Sbjct: 371 RADLLIFNSTVDGQNLSTFEAPLVN-ERDADVILSETCGAAEVLGEYCRSVNPFDLVE 427
>pdb|4F96|B Chain B, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp
pdb|4F96|A Chain A, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp
pdb|4F97|A Chain A, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Validoxylamine A 7'-Phosphate
pdb|4F97|B Chain B, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Validoxylamine A 7'-Phosphate
pdb|4F9F|A Chain A, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|4F9F|B Chain B, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|4F9F|C Chain C, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|4F9F|D Chain D, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|4F9F|E Chain E, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|4F9F|F Chain F, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp And Trehalose
pdb|3VDM|A Chain A, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase
Which Catalyzes Non-Glycosidic C-N Coupling In
Validamycin A Biosynthesis
pdb|3VDM|B Chain B, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase
Which Catalyzes Non-Glycosidic C-N Coupling In
Validamycin A Biosynthesis
pdb|3VDN|B Chain B, Crystal Structure Of Vlde, The Pseudo-Glycosyltransferase,
In Complex With Gdp
Length = 497
Score = 92.8 bits (229), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 105/418 (25%), Positives = 174/418 (41%), Gaps = 32/418 (7%)
Query: 125 SWQLEISVGGLVSALLGVREFEARWIGWAGVNVPDEIGQKAL-----TKALAEKRCIPVF 179
+W G +V+ GV WI A + D+ AL T L R I V
Sbjct: 28 AWLAPGGTGNVVAEQAGV--LNISWI--ASADSEDDRRASALNPDGVTMELHSGREILVR 83
Query: 180 L---DEETVHQYYNGYCNNMLWPLFHYLGLPQEDRLATTRSFQSQFDAYKRANQMFAK-V 235
L D N N++W +Y G + + + + + + R + FA +
Sbjct: 84 LIRHDPAVFRNVQNFMTANLMWAANNY-GWDRWTQPSFGSDAREGWADFGRFTRDFADAI 142
Query: 236 VNNIYEEGDVVW-CHDYHLMFLPQCLKEYNNNMKVGWFLHTPFPSSEIHRTLPS--RTEL 292
+ + + D V+ HDY L+ +P L+E + + F+H P+PS++ R LP RT +
Sbjct: 143 LKSSAQSADPVYLVHDYQLVGVPALLREQRPDAPILLFVHIPWPSADYWRILPKEIRTGI 202
Query: 293 LRSVLAADLVGFHTYDYARHFVSACTRILG---LEGTPEGVEDQGRLTRVAAFPIGIDSD 349
L +L A +GF + R+F+ + +L ++ VE +G TR+ P+G
Sbjct: 203 LHGMLPATTIGFFADRWCRNFLESVADLLPDARIDREAMTVEWRGHRTRLRTMPLGYSP- 261
Query: 350 RFVRALELPQVQDHINELKERFAGRKVMLGVDRLDMIKGIPQKILAFEKFLEENPSWRDK 409
PQ+ + I E + G ++++ R D IK + + AF L +K
Sbjct: 262 -LTLDGRNPQLPEGIEEWAD---GHRLVVHSGRTDPIKNAERAVRAF--VLAARGGGLEK 315
Query: 410 VVLIQIAVPTRTDVPEYQKLTSQVHEIVGRINGRYGTLTTVPIHHLDRSLDFHALCALYA 469
++ P R VP +V V N G+ T +D D + A +
Sbjct: 316 TRMLVRMNPNRLYVPANADYVHRVETAVAEANAELGSDTV----RIDNDNDVNHTIACFR 371
Query: 470 ITDVALVTSLRDGMNLVSYEFVACQASKKGVLILSEFAGAAQSLGAGAILVNPWNITE 527
D+ + S DG NL ++E + +ILSE GAA+ LG VNP+++ E
Sbjct: 372 RADLLIFNSTVDGQNLSTFEAPLVN-ERDADVILSETCGAAEVLGEYCRSVNPFDLVE 428
>pdb|3T7D|A Chain A, Vall From Streptomyces Hygroscopicus In Complex With
Trehalose
pdb|3T7D|B Chain B, Vall From Streptomyces Hygroscopicus In Complex With
Trehalose
Length = 497
Score = 90.5 bits (223), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 82/310 (26%), Positives = 136/310 (43%), Gaps = 19/310 (6%)
Query: 225 YKRANQMFAK-VVNNIYEEGDVVW-CHDYHLMFLPQCLKEYNNNMKVGWFLHTPFPSSEI 282
+ R + FA ++ + + D V+ HDY L+ +P L+E + + F+H P+PS++
Sbjct: 131 FGRFTRDFADAILKSSAQSADPVYLVHDYQLVGVPALLREQRPDAPILLFVHIPWPSADY 190
Query: 283 HRTLPS--RTELLRSVLAADLVGFHTYDYARHFVSACTRILG---LEGTPEGVEDQGRLT 337
R LP RT +L L A +GF + R+F+ + +L ++ VE +G T
Sbjct: 191 WRILPKEIRTGILHGXLPATTIGFFADRWCRNFLESVADLLPDARIDREAXTVEWRGHRT 250
Query: 338 RVAAFPIGIDSDRFVRALELPQVQDHINELKERFAGRKVMLGVDRLDMIKGIPQKILAFE 397
R+ P+G PQ+ + I E + G ++++ R D IK + + AF
Sbjct: 251 RLRTXPLGYSP--LTLDGRNPQLPEGIEEWAD---GHRLVVHSGRTDPIKNAERAVRAF- 304
Query: 398 KFLEENPSWRDKVVLIQIAVPTRTDVPEYQKLTSQVHEIVGRINGRYGTLTTVPIHHLDR 457
L +K + P R VP +V V N G+ T +D
Sbjct: 305 -VLAARGGGLEKTRXLVRXNPNRLYVPANADYVHRVETAVAEANAELGSDTV----RIDN 359
Query: 458 SLDFHALCALYAITDVALVTSLRDGMNLVSYEFVACQASKKGVLILSEFAGAAQSLGAGA 517
D + A + D+ + S DG NL ++E + +ILSE GAA+ LG
Sbjct: 360 DNDVNHTIACFRRADLLIFNSTVDGQNLSTFEAPLVN-ERDADVILSETCGAAEVLGEYC 418
Query: 518 ILVNPWNITE 527
VNP+++ E
Sbjct: 419 RSVNPFDLVE 428
>pdb|2BK2|A Chain A, The Prepore Structure Of Pneumolysin, Obtained By Fitting
The Alpha Carbon Trace Of Perfringolysin O Into A
Cryo-em Map
Length = 456
Score = 33.1 bits (74), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 53/112 (47%), Gaps = 5/112 (4%)
Query: 394 LAFEKFLEENPS-WRDKVVLIQIAVPTRTDVPEYQKLTSQVHEIVGRINGRYGTLTTVPI 452
LA + F+E P+ K I I + + D P Y K++ + E+V + N +Y + T+P
Sbjct: 74 LADKAFVENRPTILMVKRKPININISIKVDDPTYGKVSGAIDELVSKWNEKYSSTHTLPA 133
Query: 453 HHLDRSLDFHALCALYAITDVALVTSLRDGMNLVSYEFVACQASKKGVLILS 504
R+ ++ + AL + + N + +F A ++K V+IL+
Sbjct: 134 ----RTQYSESMVYSKSQISSALNVNAKVLENSLGVDFNAVANNEKKVMILA 181
>pdb|2CW3|A Chain A, X-Ray Structure Of Pmsod2, Superoxide Dismutase From
Perkinsus Marinus
pdb|2CW3|B Chain B, X-Ray Structure Of Pmsod2, Superoxide Dismutase From
Perkinsus Marinus
Length = 280
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 278 PSSEIHRTLPSRTELLRSVLAADLVGFHTYDYARHFVSACTRILGLEGTPE 328
PSS + TLP E L V++A V FH Y +H ++L G PE
Sbjct: 76 PSSGLRMTLPYGLEALEPVISAATVDFH---YNKHHQGYIQKLLDATGLPE 123
>pdb|2BK1|A Chain A, The Pore Structure Of Pneumolysin, Obtained By Fitting The
Alpha Carbon Trace Of Perfringolysin O Into A Cryo-em
Map
Length = 448
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 56/121 (46%), Gaps = 14/121 (11%)
Query: 394 LAFEKFLEENPSW---RDKVVLIQIAVP-------TRTDVPEYQKLTSQVHEIVGRINGR 443
LA + F+E P+ + K + I I +P + D P Y K++ + E+V + N +
Sbjct: 57 LADKAFVENRPTILMVKRKPININIDLPGLKGENSIKVDDPTYGKVSGAIDELVSKWNEK 116
Query: 444 YGTLTTVPIHHLDRSLDFHALCALYAITDVALVTSLRDGMNLVSYEFVACQASKKGVLIL 503
Y + T+P R+ ++ + AL + + N + +F A ++K V+IL
Sbjct: 117 YSSTHTLPA----RTQYSESMVYSKSQISSALNVNAKVLENSLGVDFNAVANNEKKVMIL 172
Query: 504 S 504
+
Sbjct: 173 A 173
>pdb|4FFB|C Chain C, A Tog:alphaBETA-Tubulin Complex Structure Reveals
Conformation-Based Mechanisms For A Microtubule
Polymerase
Length = 278
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 203 YLGLPQEDRLATTRSFQSQFDAYKRANQMFAKVVNNIYEEGDV 245
Y LP E+RL T + ++++ +AYK NQ+F V +I + ++
Sbjct: 9 YTTLPLEERL-TYKLWKARLEAYKELNQLFRNSVGDISRDDNI 50
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,959,950
Number of Sequences: 62578
Number of extensions: 1180897
Number of successful extensions: 2626
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2604
Number of HSP's gapped (non-prelim): 13
length of query: 942
length of database: 14,973,337
effective HSP length: 108
effective length of query: 834
effective length of database: 8,214,913
effective search space: 6851237442
effective search space used: 6851237442
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)